BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (303 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B5EWS4 Recombination-associated protein rdgC n=185 Tax=... 587 e-166 UniRef50_A7MT92 Recombination-associated protein rdgC n=51 Tax=V... 379 e-104 UniRef50_C4K8J6 Recombination-associated protein rdgC n=1 Tax=Ca... 355 8e-97 UniRef50_A1SWV9 Recombination-associated protein rdgC n=4 Tax=Ga... 329 6e-89 UniRef50_Q8L2C7 DNA recombination protein n=2 Tax=Enterobacteria... 321 2e-86 UniRef50_A3QGL9 Recombination-associated protein rdgC n=2 Tax=Ga... 312 8e-84 UniRef50_A5UGC4 Recombination-associated protein rdgC n=48 Tax=G... 300 3e-80 UniRef50_A4Y4Y9 Recombination-associated protein rdgC n=26 Tax=G... 300 4e-80 UniRef50_A3EHV2 Recombination-associated protein RdgC n=2 Tax=Vi... 284 2e-75 UniRef50_B0KTR8 Recombination-associated protein rdgC n=24 Tax=r... 279 8e-74 UniRef50_Q486R8 Recombination-associated protein rdgC n=1 Tax=Co... 278 2e-73 UniRef50_D0ZDE3 Recombination-associated protein RdgC n=1 Tax=Ed... 273 5e-72 UniRef50_A0YFL6 Recombination-associated protein RdgC n=1 Tax=ma... 266 8e-70 UniRef50_Q3II43 Recombination-associated protein rdgC n=3 Tax=Al... 265 2e-69 UniRef50_A7BMB4 Recombination associated protein RdgC n=2 Tax=Be... 264 3e-69 UniRef50_A3JCB9 Recombination-associated protein RdgC n=3 Tax=Ma... 263 4e-69 UniRef50_Q21NJ1 Recombination-associated protein rdgC n=1 Tax=Sa... 262 1e-68 UniRef50_Q2BMW7 Putative uncharacterized protein n=1 Tax=Neptuni... 261 2e-68 UniRef50_B5JTM5 Recombination associated protein n=1 Tax=gamma p... 260 5e-68 UniRef50_B3PBT6 Recombinaison associated protein n=2 Tax=Gammapr... 255 2e-66 UniRef50_Q15X11 Recombination-associated protein rdgC n=4 Tax=Al... 253 6e-66 UniRef50_Q60AJ9 Recombination-associated protein RdgC n=1 Tax=Me... 252 1e-65 UniRef50_Q8H9Q5 ORF10 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q5_9CAUD 250 4e-65 UniRef50_C4ZKX6 Putative exonuclease RdgC n=1 Tax=Thauera sp. MZ... 244 2e-63 UniRef50_A3WJE4 DNA recombination-dependent growth factor C n=2 ... 243 5e-63 UniRef50_A4A8V5 Recombination-associated protein RdgC n=3 Tax=un... 241 2e-62 UniRef50_A1WYS1 Recombination-associated protein rdgC n=4 Tax=Ec... 238 3e-61 UniRef50_C5S756 Putative exonuclease RdgC n=1 Tax=Allochromatium... 236 8e-61 UniRef50_A0Z347 Recombination associated protein n=2 Tax=unclass... 221 3e-56 UniRef50_Q2SCW6 DNA recombination-dependent growth factor C n=1 ... 218 2e-55 UniRef50_Q0F2D9 Recombination associated protein n=1 Tax=Maripro... 212 1e-53 UniRef50_B1K4Q5 Recombination-associated protein rdgC n=44 Tax=B... 195 2e-48 UniRef50_Q1QVI8 Putative exonuclease, RdgC n=1 Tax=Chromohalobac... 193 5e-48 UniRef50_Q478Z5 Recombination-associated protein rdgC n=3 Tax=Rh... 186 1e-45 UniRef50_C0DWI1 Putative uncharacterized protein n=1 Tax=Eikenel... 186 1e-45 UniRef50_O87408 Recombination-associated protein rdgC n=29 Tax=N... 183 6e-45 UniRef50_A4JTE0 Putative exonuclease, RdgC n=1 Tax=Burkholderia ... 179 8e-44 UniRef50_A2SM13 DNA recombination-dependent growth factor n=19 T... 176 9e-43 UniRef50_C7RD57 Putative exonuclease RdgC n=1 Tax=Kangiella kore... 173 6e-42 UniRef50_B5AX95 Putative exonuclease RdgC n=1 Tax=Iodobacterioph... 173 7e-42 UniRef50_C9YCI4 Recombination-associated protein rdgC n=5 Tax=Co... 173 8e-42 UniRef50_C6MGX0 Putative exonuclease RdgC n=1 Tax=Nitrosomonas s... 169 8e-41 UniRef50_Q0VLT7 Recombination associated protein rdgC n=2 Tax=Al... 168 2e-40 UniRef50_B2I7H2 Recombination-associated protein rdgC n=24 Tax=X... 167 5e-40 UniRef50_A2SN77 DNA recombination-dependent growth factor n=1 Ta... 163 7e-39 UniRef50_C4GKZ6 Putative uncharacterized protein n=2 Tax=Neisser... 162 1e-38 UniRef50_A1VR42 Putative exonuclease, RdgC n=1 Tax=Polaromonas n... 160 6e-38 UniRef50_A6GUC5 Recombination associated protein n=5 Tax=Betapro... 160 7e-38 UniRef50_A3Y751 Recombination-associated protein RdgC n=2 Tax=Ma... 160 7e-38 UniRef50_Q1N0M2 Recombination associated protein n=1 Tax=Bermane... 149 8e-35 UniRef50_A4BHD8 Recombination-associated protein RdgC n=1 Tax=Re... 148 3e-34 UniRef50_A4JWD6 Putative exonuclease, RdgC n=1 Tax=Burkholderia ... 148 3e-34 UniRef50_Q5ZW99 Exonuclease involved in removal of stalled repli... 144 3e-33 UniRef50_D1RMX8 Putative exonuclease n=1 Tax=Legionella longbeac... 113 7e-24 UniRef50_B0U148 Recombination associated protein n=19 Tax=Franci... 111 3e-23 UniRef50_D0KZJ6 Putative exonuclease RdgC n=1 Tax=Halothiobacill... 108 3e-22 UniRef50_Q5NWY5 Predicted DNA recombination-dependent growth fac... 107 7e-22 UniRef50_UPI000045D917 COG2974: DNA recombination-dependent grow... 68 4e-10 UniRef50_B7WYI4 DNA recombination-dependent growth factor C-like... 57 8e-07 UniRef50_B7MW52 Putative uncharacterized protein n=2 Tax=Escheri... 56 2e-06 UniRef50_A8TCH0 Recombination associated protein (Fragment) n=1 ... 56 2e-06 UniRef50_A1U7Y4 DNA recombination-dependent growth factor C-like... 48 4e-04 UniRef50_A3JHF7 Recombination associated protein n=1 Tax=Marinob... 48 4e-04 UniRef50_D2K0C7 Recombination-associated protein n=1 Tax=Staphyl... 45 0.003 UniRef50_Q7WXD3 Putative uncharacterized protein n=1 Tax=Ralston... 45 0.004 UniRef50_Q7Y3W9 Recombination associated protein n=1 Tax=Yersini... 43 0.013 UniRef50_C0SQP8 Putative conjugation-related ATPase n=1 Tax=Lact... 42 0.029 >UniRef50_B5EWS4 Recombination-associated protein rdgC n=185 Tax=root RepID=RDGC_SALA4 Length = 303 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 282/303 (93%), Positives = 295/303 (97%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 MLWFKNLMVYRLSR+I+LRAEEMEKQLASM FTPCGSQDMAKMGWVPPMGSHSDALTH A Sbjct: 1 MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTA 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 NGQI+ICARKEEKILPSPVIKQALEAKI KLEA+Q RKLKKTEKDSLKDEVLHSLLPRAF Sbjct: 61 NGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPL++ENPIELTLTEWV Sbjct: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 RSG+ AQGFQLLDEAELK++LEDGGVIRAKKQDL S+EI HIEAGKVVTKLALDWQQRI Sbjct: 181 RSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 QFVMCDDGS+KRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQ+L+EGLGGE Sbjct: 241 QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE 300 Query: 301 AQR 303 AQR Sbjct: 301 AQR 303 >UniRef50_A7MT92 Recombination-associated protein rdgC n=51 Tax=Vibrionales RepID=RDGC_VIBHB Length = 304 Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/298 (60%), Positives = 229/298 (76%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN +VYR++RE++ A+++E QLA FTPCGSQD K GWV MG + D +THV+ Sbjct: 1 MWFKNCLVYRVNREVNFNADQLETQLAEFRFTPCGSQDKQKFGWVSAMGRNGDMMTHVSE 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 +I+ICA+KEEK+LP+ VIK +L AK+ +EA++ R LKK EKD+LKD+++ LLPRAFS Sbjct: 61 NRILICAKKEEKMLPASVIKDSLNAKVEAMEAQEGRPLKKKEKDNLKDDIVMDLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S T + I G I+VD +S KKAED LALLRK++GSLPVVP E IE TLTEWV+ Sbjct: 121 RSSHTYVLIMPKEGFILVDASSYKKAEDVLALLRKTMGSLPVVPAIPEVAIETTLTEWVK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +G QG ++DEAELKS+LE+GGVIR KKQ+LT++EI NHI A KVVTKLAL+WQ RI+ Sbjct: 181 TGDTPQGISMMDEAELKSVLEEGGVIRCKKQELTTDEIRNHIAADKVVTKLALNWQDRIE 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 F+M +D +KRLKF DEL+DQN+DI RED A RFDADF LM GE +A + NL E LGG Sbjct: 241 FIMAEDSGIKRLKFSDELKDQNDDIPREDQAARFDADFSLMCGEFSAFLPNLYETLGG 298 >UniRef50_C4K8J6 Recombination-associated protein rdgC n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=RDGC_HAMD5 Length = 302 Score = 355 bits (912), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 164/298 (55%), Positives = 228/298 (76%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M+WFKNLM+Y+L + + E+EK+LA+ AF PCG Q+ ++GW+PPM SH D L++ Sbjct: 1 MIWFKNLMMYQLQCPLEKDSSELEKKLANFAFIPCGPQEKVRVGWIPPMVSHKDTLSYQV 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 N QI++CA KEEK+LP+ VIKQ LE++I KLEA+Q RKLKKTEK SLKD V + LLPRAF Sbjct: 61 NRQILLCAHKEEKMLPASVIKQELESQIEKLEAQQKRKLKKTEKASLKDHVFYDLLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 SRF +T +WIDT++ ++++D +S K+AE+ LALLR+SLGSL VVP + ++P+E LTEW+ Sbjct: 121 SRFQKTWIWIDTIHQMMILDASSTKRAEEALALLRQSLGSLAVVPFTFKHPVEFILTEWI 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 RS + GF L++EAELKS L +GG IR K Q+L S+EI HI++GK VT+LAL+WQ+ I Sbjct: 181 RSDNLPSGFVLMEEAELKSTLTEGGTIRCKNQNLYSDEIALHIKSGKKVTRLALEWQESI 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 Q ++ D SLKR+KF + LR++N I++++ AQ FDADF+LMT EL LI+N++ Sbjct: 241 QLILNQDLSLKRVKFLEVLREKNSHINKKEVAQCFDADFVLMTYELTELIKNMMSAFS 298 >UniRef50_A1SWV9 Recombination-associated protein rdgC n=4 Tax=Gammaproteobacteria RepID=RDGC_PSYIN Length = 302 Score = 329 bits (844), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 156/299 (52%), Positives = 214/299 (71%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++FKNL VYR +R + + +E+ L F PCGSQD++K+GWV PMG TH+A Sbjct: 1 MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAG 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 QI+IC +KEEK+LP+ VIK L ++ +E EQ R LKK EKDSLK+E++ LLPRAFS Sbjct: 61 KQILICLKKEEKMLPAGVIKDQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQT WID+ + ++ VD +S +KAE+ ++LLRK+LGSLP+VP+ ++N ++ +T+W+ Sbjct: 121 RTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSLPIVPIQLKNQADVIMTDWLT 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ F L DEAEL S LE GG+IR K+QDL S+EI NH+ A K VTKLAL W I Sbjct: 181 EGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ ++ +LKR+KF D L++QNEDID++DFA RFDADF LMTGE+ LI ++ GGE Sbjct: 241 FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGE 299 >UniRef50_Q8L2C7 DNA recombination protein n=2 Tax=Enterobacteriaceae RepID=Q8L2C7_PROVU Length = 333 Score = 321 bits (822), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 151/298 (50%), Positives = 207/298 (69%), Gaps = 2/298 (0%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 K+++VYR++R+I + +QL + F PCG QDMA+ GWV P+G + LTH ANG I Sbjct: 7 KSVVVYRITRQIDF--SNIAEQLKTFVFQPCGPQDMARTGWVSPLGEEYEELTHQANGLI 64 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFS 124 ++ R E KI+P +K+ + ++ KLE EQ R+LK+TE +L D VL LLP+A S+++ Sbjct: 65 LLTQRNESKIIPPATVKELVRQRVTKLEKEQHRRLKRTEISALNDLVLGELLPKALSKYA 124 Query: 125 QTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGS 184 MWID + LI+VD S K+AED ALLRK+LGSLP++P ++E P+EL LTEWVRS Sbjct: 125 NMNMWIDPKSRLIIVDTTSFKRAEDAAALLRKTLGSLPIIPFTLETPVELKLTEWVRSSE 184 Query: 185 AAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVM 244 G L DEA L+++LEDGGV+ K+QDL +EI NHIEAGK+VTKL++ W +++ FV+ Sbjct: 185 LPPGLALCDEATLEAILEDGGVVTTKRQDLVCDEIANHIEAGKLVTKLSMSWMEQLNFVI 244 Query: 245 CDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 D + RL F D L +QN+DIDRED QRFDADF+L TG + L+ LI GGEA+ Sbjct: 245 NDSFVISRLNFADALIEQNDDIDREDEVQRFDADFVLFTGVIMELLDQLIAAFGGEAK 302 >UniRef50_A3QGL9 Recombination-associated protein rdgC n=2 Tax=Gammaproteobacteria RepID=RDGC_SHELP Length = 303 Score = 312 bits (800), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 156/298 (52%), Positives = 207/298 (69%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYR ++ S+ E +EK L F+PC SQD++K G+ +G L H A Sbjct: 1 MWFKNLTVYRFNKPFSVDTEALEKSLEDFTFSPCSSQDISKFGFSKALGKLGHTLVHSAE 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +ICA KEEKILPS V+K+ALE K+A++EAE+ RKL K EKD+LK+E+ +LLPRAFS Sbjct: 61 NRHLICATKEEKILPSQVVKEALEEKVAQIEAEENRKLAKKEKDALKEEITTTLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQ I +I+VD +SA KAE+ LALLRK+LGSLPV+P+S + PIE LTEW++ Sbjct: 121 RRSQIHALILPEIEMILVDSSSATKAEELLALLRKALGSLPVIPMSFKTPIEAQLTEWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S SA F++ DEAELKS ++GG++R K+QDLT E+ H+E GK V KLAL + Q I Sbjct: 181 SNSAPAPFEMQDEAELKSDSDEGGIVRFKQQDLTENEVLAHLEVGKQVHKLALHFGQSIA 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D +KRLKF +E R N+++ ED R DADF LM EL AL+ +L+E LGG Sbjct: 241 FVLQSDAGIKRLKFSEEFRAHNDEVSTEDPLARLDADFALMGSELIALMNSLVEVLGG 298 >UniRef50_A5UGC4 Recombination-associated protein rdgC n=48 Tax=Gammaproteobacteria RepID=RDGC_HAEIG Length = 302 Score = 300 bits (769), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 209/303 (68%), Gaps = 3/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNLM YRL++ + +++ QL F PCG+QD +K GW P+ SD L Sbjct: 1 MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPLRG-SDLLYFSVG 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 QI++ A+KEEKILP+ V+K+ L+ +I LE ++ RKLKK EK +LKD+V+ +LLPRAFS Sbjct: 60 KQILLIAKKEEKILPANVVKRELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + T +WIDT N LI +D AS+K+AED LALLRKSLGSLPVVPL+ N LT W+ Sbjct: 120 KNQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLPVVPLAFANEPSTILTNWIL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGK-VVTKLALDWQQRI 240 + L+EAEL+ ED VIR KKQ L +EEI ++ GK VV+KLAL+W+ + Sbjct: 180 QDNLPHWLLALEEAELRGSQEDS-VIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTL 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV +D ++KRLKF D +R++N+DI +EDFAQRFDADF+LMTG LA L +NL++ GGE Sbjct: 239 TFVFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGE 298 Query: 301 AQR 303 R Sbjct: 299 KAR 301 >UniRef50_A4Y4Y9 Recombination-associated protein rdgC n=26 Tax=Gammaproteobacteria RepID=RDGC_SHEPC Length = 304 Score = 300 bits (768), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 150/298 (50%), Positives = 204/298 (68%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YR ++ + E +E LA F+PC SQD++K G+ +G +L H AN Sbjct: 1 MWFKNLTLYRFNKPFVVETEALETALADFTFSPCSSQDISKFGFSNALGKKGSSLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +IC KEEK+LP VIK+ALE K+A +E E+ RKL K EKD+LKDE++ SLLPRAFS Sbjct: 61 NRHLICVTKEEKMLPGQVIKEALEEKVALIEDEENRKLAKKEKDALKDEIITSLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQT I +I+VD +SA KAE+ LALLRK+LGSLPV+PLS + P+E LTEW++ Sbjct: 121 RRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPVESHLTEWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +GSA F++ DEAELKS ++GG++R K+QDL +E+ H+ GK V KLAL + Q I Sbjct: 181 NGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 ++ D S+KRLKF +E R N+++ +D R DADF LM EL AL+ L+ LGG Sbjct: 241 LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVSALGG 298 >UniRef50_A3EHV2 Recombination-associated protein RdgC n=2 Tax=Vibrio cholerae RepID=A3EHV2_VIBCH Length = 369 Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 137/302 (45%), Positives = 206/302 (68%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++ KNL++YR++R+I E+ME L T GSQD K GWVP + + S AL H ++ Sbjct: 1 MFPKNLLIYRVNRDIQFDPEKMETLLGEFKLTQLGSQDKQKFGWVPALYNKSSALVHSSS 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I+I A+K EK++P+ +I + ++ K+ +LE E+ R LKK +++ ++++++ +LP A Sbjct: 61 GNILIRAQKSEKLIPASIISKMVKEKVEQLEREEGRPLKKKDREQIREDIIIDILPTALI 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S T ++I GLI+VD +S KKAED+LALLRK+LGSLPVVPL +E TLTEWV+ Sbjct: 121 KESFTSLFILPSQGLIIVDASSYKKAEDSLALLRKTLGSLPVVPLIPAVAVETTLTEWVK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + GF + + A ++S+LE G + K ++L++E I HIE KVVT L++DWQ RI+ Sbjct: 181 TAQVPSGFSIGNSAVMQSILEKGAQVTLKNEELSAESIQKHIEENKVVTALSIDWQDRIK 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 F + D ++ R+KF DEL++QN+DI RED A R DADF L+ GEL A +LI+ LGG + Sbjct: 241 FTLKDTMAITRVKFADELKEQNDDIPREDLAARLDADFTLIAGELTAFCSHLIDALGGVS 300 Query: 302 QR 303 Q+ Sbjct: 301 QQ 302 >UniRef50_B0KTR8 Recombination-associated protein rdgC n=24 Tax=root RepID=RDGC_PSEPG Length = 306 Score = 279 bits (714), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 141/300 (47%), Positives = 199/300 (66%), Gaps = 1/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVA 60 +WFKNL+ YRL++E+ E +E LAS PC SQ++ G+V P G DA L HV+ Sbjct: 1 MWFKNLLTYRLTQEVPFEPEALEAALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVS 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 ++I ARKEE+ILPS V+ A++ K+ ++E EQ RK+ K E+D +KDE++ + LPRAF Sbjct: 61 GEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 R S I G+I+V+ ASAK+AED L+ LR+ +GSLPV P +++ T+T+WV Sbjct: 121 IRRSMIFAAIAPRLGVILVNSASAKRAEDLLSTLREVMGSLPVRPATVKVAPVATMTDWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +S AA+GF +LDE EL+ EDGG++R K+QDLT EEI H+ GKVVT+LAL WQ ++ Sbjct: 181 KSQQAAEGFHVLDECELRDTAEDGGIVRCKRQDLTGEEIQLHLSTGKVVTQLALAWQDKL 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D +KRLKF + L++Q E ++ AQ+FDA F LM A + L E LGGE Sbjct: 241 SFILDDKMVIKRLKFEELLQEQAEQDGGDEAAQQFDASFQLMMMTFAEFLPVLFEALGGE 300 >UniRef50_Q486R8 Recombination-associated protein rdgC n=1 Tax=Colwellia psychrerythraea 34H RepID=RDGC_COLP3 Length = 307 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 133/293 (45%), Positives = 189/293 (64%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL + +R +++EK L+ FTP GS +++ GW+ +G H D H AN Sbjct: 1 MWFKNLYFFAFTRPFEWSEQDLEKHLSEHLFTPLGSTEISHFGWINALGKHGDTSVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +ICARKEEK+LP+ VIK +E K+ LE EQ R K EK+ K+++ LLPRAFS Sbjct: 61 GNFLICARKEEKMLPASVIKDMIEEKVNLLEQEQGRGATKKEKEQFKEDITFELLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + T +I VN +I+++ +S KAED LALLRK LG+LPV L + + T+T+W+ Sbjct: 121 RITDTHAYISPVNNIIVINSSSRGKAEDLLALLRKVLGTLPVSSLEPDVCADETMTDWLN 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F L EAE +L +DG V+R K QDL SEEI +H++A K V K+AL+W + + Sbjct: 181 EKSLGGKFTLGMEAEFNALGDDGAVVRVKNQDLLSEEIKSHLDADKYVVKVALEWDESLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLI 294 F++CDD ++KR+KF D + +QN+DID +D + DADF LM+GEL I L+ Sbjct: 241 FILCDDLAIKRVKFFDVIHEQNDDIDSDDVIAKLDADFALMSGELNRFIIELL 293 >UniRef50_D0ZDE3 Recombination-associated protein RdgC n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZDE3_EDWTE Length = 229 Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 128/210 (60%), Positives = 167/210 (79%), Gaps = 1/210 (0%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 KN+++YRL+R+I L A+ +E + M FTPC SQDM++ GW P+ + + +L H ANG Sbjct: 6 VKNVLIYRLTRDIDLDAKAIEAAITPMTFTPCASQDMSRSGWTAPLAT-AGSLIHAANGY 64 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 +++ R+E+KILP+ VI++ L +IAKLE EQ RKLKKTEKD+L+DEVLHSLLPRAF+R Sbjct: 65 LLMRYRREQKILPAAVIQKHLRERIAKLEQEQCRKLKKTEKDALRDEVLHSLLPRAFTRT 124 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 Q+ +WIDT L+MVD A+AKKAED L+LLRKSLGSLPVVPL+M+ PIE+TLT+WVR+G Sbjct: 125 HQSWLWIDTAKKLVMVDAANAKKAEDILSLLRKSLGSLPVVPLTMKTPIEITLTQWVRTG 184 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQD 213 A GF L DEAELK+ LEDGG+IR K+QD Sbjct: 185 KAPAGFTLGDEAELKATLEDGGIIRTKQQD 214 >UniRef50_A0YFL6 Recombination-associated protein RdgC n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFL6_9GAMM Length = 307 Score = 266 bits (679), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 195/299 (65%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYR ++ + EE+ + L + F PCGSQD+++ GWVPP+G H H AN Sbjct: 1 MWFKNLQVYRFTKPFDMTPEELSEALQTKEFQPCGSQDLSRYGWVPPLGHHGTDFVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++CA+K++K+LP+ VI + + KI ++A + R + + E+ +LKD+V LLPRA Sbjct: 61 GFVMVCAKKQDKLLPAAVINEMVGEKIVDIQANEGRAVGRKERQNLKDDVTFELLPRALV 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +I GL++V+ +S+K+AE+ ++ LR+++GS+PV+P+ N + T+T+W+ Sbjct: 121 KSSLQFAFIAVQQGLLIVNASSSKRAEELISFLRETIGSVPVIPVVANNIPQHTMTQWLL 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 SG Q F+ E EL+ ++GGVIR K Q+LTS EI +HI+AG V+KL L W I Sbjct: 181 SGQPPQAFEFGHECELRDPSDEGGVIRCKHQELTSAEIASHIKAGMYVSKLGLCWNGGID 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D ++KRL F + ++++ +D D A +FD DF +MT EL ALI L + GGE Sbjct: 241 FMVDDQLAVKRLGFGEIIQEKANQLDAVDAAAQFDQDFAVMTLELVALIGALTDVFGGE 299 >UniRef50_Q3II43 Recombination-associated protein rdgC n=3 Tax=Alteromonadales RepID=RDGC_PSEHT Length = 303 Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 200/297 (67%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF NL+ YR +++S E+ +K L F PC Q++A GW G H + L+H + Sbjct: 1 MWFSNLICYRFKQDVSYTQEDFDKALEQDLFRPCTGQELATFGWTKAFGKHGETLSHFSQ 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I++CA++EEK+LP+ VI + + K+ +EAE+ R +KK EKD LK+ +LH+LLP+AF Sbjct: 61 KSILVCAKREEKVLPASVINELVAEKVDLIEAEENRPVKKKEKDELKENILHTLLPQAFK 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +ID NG ++V+ S KAE+ LALLRKSLG+LPVVP +++ LT+W+ Sbjct: 121 KSSLQFAFIDQENGWVVVNSGSFNKAEELLALLRKSLGTLPVVPAFANYDLDVFLTDWLT 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + S +GF + +AEL+ + G ++ K DL+ +E+ +H+E GK VTKLALDWQ+R++ Sbjct: 181 NFSTPEGFAIGSDAELEEADDSGAQVKLKGHDLSCDEVKSHLETGKRVTKLALDWQERVK 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 F++ +DGS+KRL + D L+++N DI +ED A + DADFIL + E+ L++ L +GLG Sbjct: 241 FMLQNDGSIKRLSYSDTLKEENADIPKEDMAVKLDADFILASEEIKQLLEELTQGLG 297 >UniRef50_A7BMB4 Recombination associated protein RdgC n=2 Tax=Beggiatoa RepID=A7BMB4_9GAMM Length = 308 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 193/300 (64%), Gaps = 3/300 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++R ++L A+++ +QL AF PCG DM MGWVPP+ S++L H N Sbjct: 1 MWFKNLHLFRFLHPVTLSADDLNEQLTESAFQPCGKMDMETMGWVPPLSRESESLVHAIN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I+ ARKEEKILP+ V+++ + K+ ++E +Q RK++K EKD +++EVLH L+PRAF+ Sbjct: 61 NCIIFTARKEEKILPASVVREFVNEKVEEIETQQMRKVRKREKDEIREEVLHDLIPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEW-V 180 R + +ID G +M+D S K+AE+ + LR+++GSLPVV ++ + +T+W + Sbjct: 121 RSTYLSAYIDVTQGWLMIDTPSHKRAEELTSFLRQTVGSLPVVVPKLQQNLGNVMTQWLI 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +L D L +DG V+ K+QDL +EE+ H+ AGK V +LAL+W R+ Sbjct: 181 NQNHCPADLELADACVLTD--QDGAVVNCKRQDLLAEEMHGHLTAGKSVKRLALEWNDRL 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D+ ++RL+ D ++ Q D + E QRFDADF +MT ELAALI+ L+E GGE Sbjct: 239 AFILDDELVIRRLQLLDLVQAQLNDTESETSTQRFDADFSIMTLELAALIKRLLEIFGGE 298 >UniRef50_A3JCB9 Recombination-associated protein RdgC n=3 Tax=Marinobacter RepID=A3JCB9_9ALTE Length = 317 Score = 263 bits (673), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 198/300 (66%), Gaps = 1/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N V+R ++ + +E+E++L + F PCG Q+ + GWV P+G H + L H AN Sbjct: 1 MWFRNARVFRFTKPFDITTDELEEKLQADTFKPCGPQETTRQGWVAPLGKHGETLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +I R+E+KILPS VIK+ +E + +E +Q RK+++ EKD LK++V+ +LP+AFS Sbjct: 61 GYHLIALRREDKILPSSVIKELMEERAEAIEIDQGRKVRRKEKDELKEQVMLEMLPQAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 + ++ ++ +G+++VD SAK+AE+ + LRKS+GSLPV P ++E T T W+ Sbjct: 121 KNRRSFAYLAPKDGVMVVDAGSAKQAEEIASALRKSIGSLPVRPPAVEQAPIFTFTGWLD 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 S +L DE ELK EDGGV+R K +L ++EI NH++AG VTKLA+ W + Sbjct: 181 ESIDLPAQIELGDECELKDPAEDGGVVRCKGMNLQADEIQNHLQAGMQVTKLAITWDDNV 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ ++ ++RLKF + L++Q E++D +D +FDA F LMT ELA LI L+E LGGE Sbjct: 241 SFVLDEELGIRRLKFGETLQEQLENVDADDALAKFDASFSLMTLELAKLIPGLLEALGGE 300 >UniRef50_Q21NJ1 Recombination-associated protein rdgC n=1 Tax=Saccharophagus degradans 2-40 RepID=RDGC_SACD2 Length = 305 Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 119/298 (39%), Positives = 198/298 (66%), Gaps = 1/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL++ E++ LA F PCG D + GWVPP+G H H AN Sbjct: 1 MWFKNLRIYRLTQPFEHSPEQLHDLLAPFEFQPCGKLDPQRGGWVPPLGRHGSEFVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++ ++EEKILPS V+K LE K+A++ ++AR + + E+++LKDE++ +LLP+AF+ Sbjct: 61 GYIMVAFKQEEKILPSAVVKDHLEQKVAEISEQEARHVSRKERETLKDEIIFTLLPKAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + + +IDT L++V+ +SAK+AED +A LR+++GS P VPL+ P +T W+R Sbjct: 121 KSNICFAYIDTNEKLLVVNASSAKRAEDLMAALREAVGSFPCVPLNPTQPPPSVMTSWLR 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + + G +L +E EL + +DG +IR K QDLT++E+ +HI G VV K+A+ W++ +Q Sbjct: 181 DNTISAGLELGEECELTA-PKDGRIIRCKNQDLTADEVLSHINTGMVVNKIAVIWKEGVQ 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 ++ D + KRLKF + ++++ + + + A+ FD +F +MT EL+ +I++L++ GG Sbjct: 240 LIIDDQFAFKRLKFEEIIQEKAQSSNADSMAEEFDQEFAIMTVELSQMIKDLVKAFGG 297 >UniRef50_Q2BMW7 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMW7_9GAMM Length = 304 Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 133/303 (43%), Positives = 194/303 (64%), Gaps = 1/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN++ YRL+ E+++++L AFTPC SQ++++ GWV P + H + Sbjct: 1 MWFKNVIFYRLNEAFEYSQEQLQEKLKEQAFTPCKSQELSRYGWVSPCQQLDEMYAHQVH 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ ARKEEKILP VIK+A+ K+A++E EQARK+ K E+D LKDEV+ LLPRAFS Sbjct: 61 GMFMLAARKEEKILPGAVIKEAVGDKVARIENEQARKVYKKERDQLKDEVILDLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 +F QT I G I VD +S K+AE+ L+ LR +LGSLP+ ++ ++ W+ Sbjct: 121 KFQQTYALIAPAQGWIAVDASSHKRAEELLSHLRGTLGSLPIALPDVQQSPSAVMSNWLE 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + S QGF++ DE EL+ + +GGVIR K Q L EE H+EAGK V KLAL+W +++ Sbjct: 181 HNDSLPQGFEVQDECELRDNVLEGGVIRIKGQQLEDEEFIAHLEAGKRVVKLALEWDEQL 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 +F++ +D ++KRLK ++L+++ D ED +FD D + M E A L LI GGE Sbjct: 241 RFMLQEDLAIKRLKLSEQLQEKMADEAAEDEVAQFDVDMVQMGLEFAKLYPALIAAFGGE 300 Query: 301 AQR 303 AQR Sbjct: 301 AQR 303 >UniRef50_B5JTM5 Recombination associated protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTM5_9GAMM Length = 302 Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 190/301 (63%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 + F+NL +YR + E S E +E+QL++ AF C GWV P+G H + H AN Sbjct: 1 MLFRNLQLYRFTAEFSHSTEALERQLSAQAFQACAKNQTHSQGWVSPLGKHGEQRVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++C RKEE+++P+ V+++ALE K+ +E + R ++ EK +KDE+L +LPRAF+ Sbjct: 61 GYMMLCLRKEERLVPAAVLREALEEKVEAIELSEHRPVRGKEKARIKDELLLDMLPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R T +I +G ++VD +S +AE+ L+ LR+SLG LPV+PL + N T W++ Sbjct: 121 RSRYTYAYIAPSSGWLVVDSSSPARAEELLSALRESLGGLPVLPLQVRNAPHSVFTHWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G GF+L + EL + E GVI+ ++Q L +EEI HIEAGKVVTKLAL++Q R+ Sbjct: 181 QGHVEAGFELGERCELHGVQEQEGVIQIRRQSLDNEEIQVHIEAGKVVTKLALEFQNRLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 FV+ D S+K+L+F DE+ + E+ + FA FDA F MT EL AL L++ GGE Sbjct: 241 FVLDDALSVKQLRFSDEVLESLEEDSTDSFAAEFDARFARMTLELEALFPELLKAFGGEV 300 Query: 302 Q 302 + Sbjct: 301 E 301 >UniRef50_B3PBT6 Recombinaison associated protein n=2 Tax=Gammaproteobacteria RepID=B3PBT6_CELJU Length = 316 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 130/301 (43%), Positives = 198/301 (65%), Gaps = 1/301 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL+ + +L EE+ +LA F PCGS D + G+ PP+G H +N Sbjct: 15 MWFKNLRLYRLTDDWTLSPEELNDKLAPFCFNPCGSLDPLRYGFEPPLGREGTQYVHASN 74 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ICA+K+EKILPS VIK+ LE K+A + ++R + + E+D LKDE++ SLLPRAF+ Sbjct: 75 GYMMICAKKQEKILPSGVIKEQLEEKVAAIREAESRPVGRKERDGLKDEIIFSLLPRAFT 134 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +I LI+V+ +SAK+AED L+ LR++LGSL +P+S ++ +T+W+R Sbjct: 135 KSSLDYAYIALQEKLIVVNSSSAKRAEDLLSKLREALGSLRCMPISPKHLPTQVMTQWLR 194 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 A F L +E EL++ +DG V+R KK DLT+ EI +H+++G V+K+AL W++ I Sbjct: 195 DSEAPHQFALGEEVELQA-TKDGRVVRCKKLDLTASEIRSHLDSGMHVSKIALCWKESIH 253 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 ++ D +KRLKF D + ++ D + E A++FDADF +MT EL I L+ GGEA Sbjct: 254 CILDDQLGVKRLKFEDVVSEKANDRNPETKAEQFDADFAIMTLELKNFITALLAAFGGEA 313 Query: 302 Q 302 + Sbjct: 314 E 314 >UniRef50_Q15X11 Recombination-associated protein rdgC n=4 Tax=Alteromonadales RepID=RDGC_PSEA6 Length = 301 Score = 253 bits (646), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 123/294 (41%), Positives = 194/294 (65%), Gaps = 2/294 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +Y L++ + L E+++ +LA F PCGSQ++A MGW P+G D L H A Sbjct: 1 MWFKNLKLYHLTQTLDLTEEDIQDKLAEFPFRPCGSQELATMGWTSPVG-QGDMLVHSAG 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G+ + +K+E+ILP+ V+ L K+A +EAE + K + +K+E++ LLP+AF+ Sbjct: 60 GKFWLTLKKQERILPAAVVNAELADKVALMEAETGSNVGKKAQQEMKEEIIQRLLPQAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S + +I T + L++VD ++ KAE LA+LRK++GSLPVVPL+ ++ ++ LT W+ Sbjct: 120 KNSFSHGFISTQDNLVVVDASADGKAETFLAMLRKAIGSLPVVPLAKQS-VQEELTHWLT 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S +L+EAEL+S+ EDG ++R K QDL SEEI NH+ AGK V K+A++W + Sbjct: 179 DDSVPNDVVILEEAELRSMEEDGAIVRCKNQDLGSEEIANHLSAGKTVQKIAIEWDETFS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIE 295 ++ +D ++KRLKF D + +QN+DI +ED + DADF LM+ E+ + L+E Sbjct: 239 ALLQEDMAVKRLKFTDVMTEQNDDIPKEDKLAKMDADFALMSAEIVRFSKRLVE 292 >UniRef50_Q60AJ9 Recombination-associated protein RdgC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ9_METCA Length = 310 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 127/300 (42%), Positives = 193/300 (64%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL++YR + +L AE +E L + F PCGS ++A GW PP+ L H AN Sbjct: 1 MWFKNLVLYRFTEACTLTAERLEYALVARRFAPCGSMELAAAGWHPPLRRDDLPLVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++ KEEKILP+ V+ +ALE + ++EA + + + E+ L+DEV +SLLPRAFS Sbjct: 61 GYLMVSLLKEEKILPASVVNEALEERAEEIEARRGTPVGRKERRDLRDEVFNSLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +T ++D G ++VD AS KKAE+ ++LLR++LGSLPV P++ + +T W+ Sbjct: 121 HTRRTYAYVDPRGGWLVVDSASVKKAEELVSLLRQTLGSLPVAPVATQGRPPAVMTTWLL 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + DE EL+S E+GG++R ++QDL++ EI NHI+AGK V +LA+ W R+ Sbjct: 181 EQDLPPDLVIEDECELRSPEEEGGIVRCRRQDLSAPEIRNHIDAGKEVVRLAVSWNDRLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 F + D +K+L+F D +++Q +ID D +RFDADF +MT EL+ + L+E GGEA Sbjct: 241 FTLDDALGIKKLRFLDVIQEQAAEIDAADEVERFDADFAIMTLELSQFLARLVELFGGEA 300 >UniRef50_Q8H9Q5 ORF10 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q5_9CAUD Length = 309 Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 194/300 (64%), Gaps = 2/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN + YR + L E++EK L F GSQ ++ GW +G ++ +HVAN Sbjct: 1 MWFKNAIFYRFDKAKELDFEQLEKALQEYQFKEAGSQQVSSFGWSKVLGESAELFSHVAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ICA+++EKILP+ VI++A +A+I ++ + +ARK+ K E++ LKD+V+ LLP+AFS Sbjct: 61 GCVMICAQRQEKILPADVIRRAHKARIDEVISREARKVGKKEREHLKDQVIQELLPKAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R+S++ +IDT GL +VD ++ KKAED ALLRKSLGSLP+VP +N +T W+R Sbjct: 121 RYSKSFAYIDTKRGLFVVDASAFKKAEDLGALLRKSLGSLPIVPTHTKNMPTDVMTNWLR 180 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 S G L D EL+ ++DGG++R +Q++T +E+T H+ GKV T++A++W+ ++ Sbjct: 181 SLDKLPAGIVLGDAVELRDPVQDGGIVRLTRQEITEDEVTTHLNVGKVATRIAINWEDQV 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDI-DREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 V+ +D L +KF D L ++ D D E A +FDADF++M +A L + GG Sbjct: 241 NMVLHEDVRLTGIKFDDRLVERAMDQGDGESAAAQFDADFVIMAETMAQLYVRITGLFGG 300 >UniRef50_C4ZKX6 Putative exonuclease RdgC n=1 Tax=Thauera sp. MZ1T RepID=C4ZKX6_THASP Length = 331 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 2/299 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYRL + AE +E+QLA F PCGSQDM GW+ P+G+ + L H Sbjct: 1 MWFKNLQVYRLPANWDMSAERLEEQLAKKPFHPCGSQDMESRGWLSPLGN--EVLVHAVG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 GQ ++C E ++LPS V+KQ + + +L +Q KL + + L+++V L+PRAF+ Sbjct: 59 GQWLVCLGFEHRLLPSAVVKQEADERAEELAEQQGYKLGRKQLKELREQVTQELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + WID +NG ++VD AS KAED L LR +L S P+ L E + +W+ Sbjct: 119 RRRRMFAWIDPINGWLVVDAASQSKAEDMLEQLRHTLDSFPLTLLRTERSPMSAMADWLA 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G A GF + + EL+S+ ED +R + L +++ H+EAGK+ T+LAL + RI Sbjct: 179 GGEAPDGFTIDQDCELRSVAEDKAAVRYARHPLEGDDVKGHLEAGKLPTRLALTFDDRIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ + +KRL F D +RDQ + D++D F+A+F LMTGELA L+ ++ LGGE Sbjct: 239 FVLTEKLEIKRLDFLDIVRDQVGEADKDDAEALFNAEFALMTGELAHLLPAVVAALGGE 297 >UniRef50_A3WJE4 DNA recombination-dependent growth factor C n=2 Tax=Idiomarina RepID=A3WJE4_9GAMM Length = 297 Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 129/293 (44%), Positives = 182/293 (62%), Gaps = 1/293 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN VYR S L E+ E QL + AF PCG QDM GW G+ SD L H Sbjct: 1 MWFKNARVYRFSDTFQL-PEDFESQLEAQAFKPCGRQDMTSFGWTSVFGAQSDVLHHAVE 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++CA++EEK+LP+ VI LE K+ ++ + R + EK ++K+++ H LLP+AFS Sbjct: 60 QSYLVCAQREEKVLPAAVINAELEQKVQAIQDTEGRPVNGKEKKNIKEDITHQLLPQAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +F +T +ID L++VD +SA KAED L LLR SLGSLPV P+++ E+ LTEW+ Sbjct: 120 KFRRTWAYIDLKRQLVIVDESSANKAEDLLGLLRASLGSLPVKPIALAESAEVVLTEWLT 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F L DE EL+S DGG+IR K++DLT E++ H AGK V KL L W +RI+ Sbjct: 180 KQSLPSRFDLGDELELRSPQADGGIIRCKQEDLTREDVQAHATAGKQVVKLGLVWNERIE 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLI 294 V+ D +LKR+K D+L D +D + Q+ D+D L++ EL AL+ +L+ Sbjct: 240 CVLEADWALKRIKATDQLLDDQDDWNDASPEQKLDSDLALVSAELGALLDDLL 292 >UniRef50_A4A8V5 Recombination-associated protein RdgC n=3 Tax=unclassified Gammaproteobacteria RepID=A4A8V5_9GAMM Length = 302 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 182/299 (60%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL YR++R + AE++E +LA F PC +GWVP +G ++ L H A+ Sbjct: 1 MWFKNLRAYRMTRGLEFSAEQLEDKLAGRGFKPCTPAQPLSVGWVPALGEGAEMLVHAAD 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G++++C R+EEKILP V++ ++ ++ +EA+Q RK+ + EK SLKDEV +PRAFS Sbjct: 61 GRMMLCLRREEKILPPSVVRDLVKERVEAIEAQQGRKVYRKEKLSLKDEVTQDCMPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R ++ + ID ++VD ASA +AE+ L LLR+ +GS PV+ + +T W+ Sbjct: 121 RHAELRLIIDPQARWVLVDSASASRAEEALNLLRECVGSFPVLLPQTAHAPAAAMTSWLA 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + S + Q +E EL+ + E VIR K DL S+E+ H++ V +LAL WQ+++Q Sbjct: 181 NSSLPEDLQAREECELRDMGEQAAVIRCKGLDLYSDEVRQHLQGTTQVVRLALGWQEQLQ 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ DD L+R+KF D L +N+++ ED R DADF LM L + LI GGE Sbjct: 241 FVLGDDLCLRRIKFSDALVKENDELMDEDRLARLDADFALMAPTLTTIQDRLISLFGGE 299 >UniRef50_A1WYS1 Recombination-associated protein rdgC n=4 Tax=Ectothiorhodospiraceae RepID=RDGC_HALHL Length = 302 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 193/299 (64%), Gaps = 1/299 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL+ YRL +++ E +++LA++AFTPCG+ + ++ G+VPP+G + L H A Sbjct: 1 MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGPGA-PLVHAAA 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ C ++E K+LP+ VI++A++ +I +EA + RK++K E+D ++DEV+ L+PRAFS Sbjct: 60 GSLLFCLQEETKLLPAAVIREAMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +T ++DT G ++VD S K+AE + LR++ G L + P E +T W+ Sbjct: 120 RHKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLTLSPPETEMGPGTIMTRWLA 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +L +EA L+ +G +R K+QDLTSEE+ HI+AGK V +LA+ + +R+ Sbjct: 180 QQQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLS 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 V+ D SL+RLKF D +R+Q D D E A++ DADF LMT EL LI L+E GGE Sbjct: 240 AVIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGE 298 >UniRef50_C5S756 Putative exonuclease RdgC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S756_CHRVI Length = 315 Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 120/295 (40%), Positives = 186/295 (63%), Gaps = 1/295 (0%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKN +RL + A E+E+ L F PCG + A +GW P+G + AL +G Sbjct: 2 FKNARFFRLDQPFEFTAAELEEALGGRRFRPCGPIETATLGWTSPLGEETTALVQAVSGC 61 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 +ICAR++E++LPS + +AL+ ++++LEA +AR + + E+ L++++++ +LPRAF+R Sbjct: 62 YLICARRQERLLPSAAVAEALDERVSELEAGEARDVGRAERRRLREQIINEMLPRAFTRS 121 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 +T +++DT +G ++VD +S K+AE+ ++LLR++LGSLPV P LT W+ Sbjct: 122 RRTQLYLDTESGWLVVDSSSEKQAEEVVSLLRETLGSLPVRLPDPVRPAANVLTSWLLDE 181 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 SA F D EL+ + E GV+R +QDL SEEI NH+ AGK VTKLAL+W +R+ F Sbjct: 182 SAPNDFVPGDACELRDVGEQAGVVRCSRQDLASEEILNHLRAGKQVTKLALEWDERLSFT 241 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 + DD SLKRL+ + L ++ D D D AQR DA+F ++ ++ LI L E G Sbjct: 242 LADDLSLKRLRVGEALLEEL-DGDDMDPAQRLDAEFAILALQVRQLIARLDEVFG 295 >UniRef50_A0Z347 Recombination associated protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z347_9GAMM Length = 327 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 119/299 (39%), Positives = 186/299 (62%), Gaps = 3/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL YRL + L AE M ++L S FTPC GWV + + D+L H A Sbjct: 28 MWFRNLRAYRLPERLGLDAEAMAQRLESRPFTPCRPAQPLSAGWVAALDDNVDSLVHAAG 87 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++ ++EEK+LPS VI+ + +++ +++ +ARK+ + E+ L DEV L+PRAF+ Sbjct: 88 PYWLLRLKREEKLLPSSVIRDEVGSRVLQIQTAEARKVHRKERLQLTDEVTQDLMPRAFT 147 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLP-VVPLSMENPIELTLTEWV 180 R + +G + V+ ASA +AED L+ LR++LGSLP V+P++ +NP + ++EW+ Sbjct: 148 RARSIEAMVFEKDGWLWVNNASAPRAEDFLSALREALGSLPAVLPVTRKNPAAV-MSEWL 206 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +GF+L EA+L E+GGV+RA+ L +EI HIE+GK V +LAL WQ R+ Sbjct: 207 LHDQLPEGFELGTEADLVEPGEEGGVVRARSMLLDCDEIRAHIESGKQVQRLALAWQGRL 266 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 +FV+ D ++RLKF + L ++DI+ + A+R DADF+LM+ LA L L++ GG Sbjct: 267 EFVLGADLVIRRLKFAEALTTAHDDINEDPLARR-DADFLLMSETLAELWPALLQAFGG 324 >UniRef50_Q2SCW6 DNA recombination-dependent growth factor C n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCW6_HAHCH Length = 307 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/297 (37%), Positives = 184/297 (61%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKN ++YR ++ + E++E L+ AFTPC + D ++GWVP SDAL + Sbjct: 3 FKNALIYRFTKPVPWPLEDLETGLSEHAFTPCQANDTYRLGWVPAAPLVSDALVYQQGRY 62 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 +++ ++EEKILP+ VIK+ +E + ++E + RKL+K EK+ LK++V+ LLP+AF R Sbjct: 63 LLLTLKREEKILPASVIKEEVEERAQEIEEREQRKLRKKEKNELKEQVITVLLPQAFKRS 122 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 +ID GL++VD +S +A++ + LR+S+G+LP+ +++ + ++WV+ Sbjct: 123 RLMSAYIDLDKGLLVVDTSSGTRADEFTSFLRQSMGTLPIRFVALNEAPAVHFSDWVQKD 182 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 S F D EL+S VIR K + ++ I+ HIE G VT+L+L+W +++ F Sbjct: 183 STPTPFVSGDNCELRSGDGSDTVIRCKGTESLTDAISTHIENGMQVTQLSLEWDEKLSFA 242 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 + DD +KR+KF D L++Q +D D + A+RF ADF LMT E + + +LI+ LGGE Sbjct: 243 VGDDLKIKRIKFMDTLQEQLKDGDTGEAAERFAADFSLMTLEFSRMTDDLIKVLGGE 299 >UniRef50_Q0F2D9 Recombination associated protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2D9_9PROT Length = 298 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 174/299 (58%), Gaps = 3/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N+ YR L E++ +QL+ PCG +MA GW P+G + L H Sbjct: 1 MWFRNIQFYRFEEPFKLTGEQLHEQLSKRQSRPCGQMEMASNGWSAPLGKNGTMLVHETA 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ C R+E+K+LP+ ++++ ++A+I ++E + R + EK ++D+VL LLPRAF Sbjct: 61 GNLMFCLRREDKVLPASLVRELVDAQIFEIE-QAGRTPGRKEKGEIRDQVLAELLPRAFV 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 R S T I +G ++++ +SA+KA++ + L K+L +LPVV S E E +T W+ Sbjct: 120 RASHTFACILPASGWLVINASSARKADEVIEALNKTLTTLPVVMPSTEQSPEAAMTGWLM 179 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 R+GS + F +E EL V+R + D+ S+E+ H+ G TKLAL+W++RI Sbjct: 180 RAGSLPEDFTFGEECELHD-AASSAVVRCRNVDVMSDEVRAHVTEGLTATKLALNWRERI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ +D S+KR+KF + D+ D +D RFDADF +M E + I L+ + G Sbjct: 239 SFVLSEDLSVKRMKFDTAIVDEAGDQGGDDEVARFDADFAMMAAEFSEFIPQLLTAVDG 297 >UniRef50_B1K4Q5 Recombination-associated protein rdgC n=44 Tax=Betaproteobacteria RepID=RDGC_BURCC Length = 307 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 177/298 (59%), Gaps = 3/298 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++RL ++ ++MEK LA AF P S +M ++GW P AL + N Sbjct: 1 MWFKNLQLHRLPAPWAVTPDQMEKWLAPHAFQPGSSVEMQRVGWASP--RDDGALVYSNN 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q+++ R E+K+LP+ V+ Q +A+ ++E +Q K+ + + LK++V LLPRAFS Sbjct: 59 RQMLLLFRAEKKLLPASVVNQVTKARALEVEEQQGFKVGRKQLRELKEQVTDELLPRAFS 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 T +WIDT NG +++D A+ A+D +LL KS+ LP+ + + +T+W+ Sbjct: 119 IRRDTRVWIDTANGWLVIDAAAQALADDVRSLLVKSIDQLPLAGVHVARSPVAAMTDWLL 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 SG A GF + +AEL+S E G +R L + ++ HIEAGK +LA+ W RI Sbjct: 179 SGEAPGGFTVDQDAELRSSGEGGATVRYVGHALEANDMRRHIEAGKQCMRLAMTWNDRIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ ++KR+ D +++ + + D +RFD+DF LMTGELA ++ +L++ LGG Sbjct: 239 FVLTPSLTIKRVTPLDVIKEAADPTAQND-DERFDSDFTLMTGELARMLASLVDILGG 295 >UniRef50_Q1QVI8 Putative exonuclease, RdgC n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVI8_CHRSD Length = 308 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 181/304 (59%), Gaps = 7/304 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK+L +YRL + + +E L + AF P + ++GW P G H H Sbjct: 1 MWFKHLHLYRLHDTTPVALDALETALEAFAFRPVSPSEGKRLGWQCPAGRHGQQRVHEIQ 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ A ++E++LP+ VI++ +E + A+ EA + R L + ++ ++K++V+ LLPRAF+ Sbjct: 61 GHRLLSALRQERLLPASVIREEVEERAAEREAAEGRPLPRRDRQAIKEQVVEELLPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + +W DT GLI ++CAS +AE+ L LLR+SLGSL V PL++ T+T W+ Sbjct: 121 RSQRIDLWWDTARGLIAINCASRTRAEEALDLLRQSLGSLQVTPLTVRQLPSRTMTTWLE 180 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 S +G +L D+ ELK +D GV RA+ DL +E+ + + G+ ++LALD + ++ Sbjct: 181 DMTSRPEGLRLGDQVELKDAGDD-GVWRARGIDLDGDEVQSVLAGGRQASRLALDIEDQL 239 Query: 241 QFVMCDDGSLKRLKFCDELRD---QNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 V+ DD +LK L+F D + D QNED D D R + DF LM L+ I+ LI+ L Sbjct: 240 SLVLHDDLTLKSLRFADAVLDEASQNEDDD--DPILRLETDFALMAHVLSGFIEQLIDWL 297 Query: 298 GGEA 301 GGEA Sbjct: 298 GGEA 301 >UniRef50_Q478Z5 Recombination-associated protein rdgC n=3 Tax=Rhodocyclaceae RepID=RDGC_DECAR Length = 304 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 6/302 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL ++ + ++QL+ F C S GWV P AL + Sbjct: 1 MWFKNLQLYRLPTPWNIDLAKFDEQLSRGPFVKCPSNQPMSRGWVSP--RRDGALVYSLG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q +I E+++LPS V+ + ++ + +EA+Q + + L++ V L+PRAF+ Sbjct: 59 QQWMIALSVEQRLLPSSVVNEEVKERAELMEAQQGYAPGRKQLKELRERVTEELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R T +W+D NG VD S KAE+ + LR L P+ L + + + +W+ Sbjct: 119 RRRTTYVWLDPKNGWFCVDAGSPAKAEEVIEHLRHCLDDFPLTMLHTQVSPQAAMADWLA 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSE---EITNHIEAGKVVTKLALDWQQ 238 G A GF + + ELK+ E+ +R + L E EI H+ +GK+ TKLAL W Sbjct: 179 GGDAPAGFTIDRDCELKAAGEEKAAVRYVRHPLGDEISGEIKAHLASGKMPTKLALTWDD 238 Query: 239 RIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 RI FV+ + +KRL F D L+++ E E ++FDADF LMTGEL+ + L+E LG Sbjct: 239 RISFVLGEKMEIKRLAFLDLLKEEAEK-SAEHADEQFDADFALMTGELSRFLPQLVEALG 297 Query: 299 GE 300 GE Sbjct: 298 GE 299 >UniRef50_C0DWI1 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DWI1_EIKCO Length = 299 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 176/299 (58%), Gaps = 4/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK + Y L+++ E + +L F P D G+ PP G + L A+ Sbjct: 1 MWFKQVSFYPLNKDKLPDLETLSAKLQEAEFAPPQGLDWFGEGFAPPEGFLPE-LVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +K EK+LP+ VI++ L+ KIA+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTWSVALKKSEKVLPAGVIREILDDKIAEIQEAEARTVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPV-VPLSMENPIELTLTEWV 180 R S+T DT +G ++V+ ASA +AE+ LA LR++LG L +P + ++P L +TEW+ Sbjct: 120 RSSKTQAVCDTRSGFLLVNQASATRAENLLAKLREALGGLEAKLPNTKQSPSSL-MTEWL 178 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 G+ GF+L D ELK + +R KQDLT++E+ H++ GK VT+L L W+ +I Sbjct: 179 LQGACGGGFELDDMCELKGTGDAAPTVRVSKQDLTADEVVQHVKTGKTVTQLGLVWRDQI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D +LKR+++ D L+++ E +D A A ILM L+ L+Q L+ LGG Sbjct: 239 AFVLTQDFTLKRIQYLDVLQEEAES-HGDDAASLAFASQILMAEALSTLLQELVSLLGG 296 >UniRef50_O87408 Recombination-associated protein rdgC n=29 Tax=Neisseriaceae RepID=RDGC_NEIG1 Length = 299 Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 180/299 (60%), Gaps = 4/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK + Y L++E A+ + +LA FT C D G+ P+ S S L A+ Sbjct: 1 MWFKQISFYPLNKEKLPEADVLADKLAEAEFTHCQGLDWFSEGFTAPV-SFSPELVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + + +KEEK+LP+ VI+ LE K+A+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTLRVALKKEEKVLPAGVIRDILEEKVAEIQNNEARNVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPV-VPLSMENPIELTLTEWV 180 R S+T +T +G ++V+ A++ KAE+ L LR++LG L +P + ++P L +T W+ Sbjct: 120 RSSRTEAVFNTRHGYLLVNNAASAKAENILTKLREALGGLEASLPNTKQSPSSL-MTGWL 178 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 G GF+L + ELK + V++ KQDLT++E+ H++ GK VT+L L W+++I Sbjct: 179 LQGHCEGGFELDSDCELKGTGDIVPVVKVSKQDLTADEVVQHVKNGKTVTRLGLVWREQI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 F++ D +LKR+++ D L+++ E + +D A A ILM ++ +++ L+ LGG Sbjct: 239 AFILTQDFTLKRIQYLDVLQEEAES-NGDDAAGLAFASQILMAESVSTMLEELVSYLGG 296 >UniRef50_A4JTE0 Putative exonuclease, RdgC n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTE0_BURVG Length = 301 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 3/299 (1%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 F NL +YRL+RE + AE +E+ + F PCGSQD GWV P L H Q Sbjct: 2 FSNLHIYRLTREWDMTAERLEELVGKRPFQPCGSQDQKSAGWVSPQ--EHGPLVHALGRQ 59 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 ++ R E K +P IK+A+ K E K + +K+E L LLPRAF + Sbjct: 60 WLLALRIETKSVPGEAIKKAVAEKSKDYEQRNGYKPGRKVVKDMKEEALMELLPRAFPKQ 119 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 + +WI+ +G I ++ ++ KA+D +A L ++ + P+ + + +W+ SG Sbjct: 120 ATIQVWINAESGWIAMNTSTPSKADDVVAALIETSSTAPISLVRTNQSPAQAMADWLTSG 179 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 A F + + ELK ++ ++ + L +EI HIE GK TKLA+ W R F+ Sbjct: 180 EAPDNFTVDRDCELKGTEDEKPTVKYSRLSLERDEIRQHIEEGKRPTKLAMTWDDRASFI 239 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 + D G +K+L F D + ++ ++D ED F + F +MT EL+ +L+E LGGEA+ Sbjct: 240 LTDKGQVKKLVFLDAVMEEI-NLDAEDADAVFHSTFAIMTAELSRFFPDLVESLGGEAE 297 >UniRef50_A2SM13 DNA recombination-dependent growth factor n=19 Tax=cellular organisms RepID=A2SM13_METPP Length = 312 Score = 176 bits (446), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 159/298 (53%), Gaps = 2/298 (0%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKNL VYR+ E S A ++E++LA+ FT CG+ GWVPP G AL GQ Sbjct: 2 FKNLTVYRIGPEWSGSATQIEERLATARFTECGATQALSAGWVPPRGQAHGALVESVAGQ 61 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 + E+K+LP+ V+K+ + + E + RK + LK++ LLP AF++ Sbjct: 62 WLATLMVEQKLLPAAVVKRRTDELAQRAEHDTGRKPGRKHLKELKEQAALELLPMAFTKR 121 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 + +W+D L++VD +S +A D + L K L LPV PL + W+ G Sbjct: 122 ATFRVWLDPQRRLLIVDASSPARAGDVVTHLVKVLDGLPVAPLQTALSAATAMAAWLADG 181 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 Q F + E ELKS E V+R + L ++E+ HI GK T+LAL WQ R+ FV Sbjct: 182 EPPQAFSVDRECELKSDDEQKSVVRYARHRLDTDEVRQHIGEGKRPTRLALTWQGRVSFV 241 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 + D G +K+L F D + D + R D FDAD + TGEL LI +L++ LGGEA Sbjct: 242 LTDAGQIKKLDFLDGVFDAHP--GRADADAAFDADVAIATGELVQLIPDLVDALGGEA 297 >UniRef50_C7RD57 Putative exonuclease RdgC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RD57_KANKD Length = 301 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 161/292 (55%), Gaps = 2/292 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N +Y L+ EE+ + L + F+ G QD +GW+ P+ + L H AN Sbjct: 1 MWFRNCYIYHLTSSFQHSPEELAELLENQRFSSVGRQDTETLGWISPLNRQFEHLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++C RKE+K++P+ ++K+ LE +++ +EAE+ RK+ EK +LKD++L L P+A S Sbjct: 61 GCILLCLRKEQKVIPASMVKETLEERVSTIEAEEGRKVFGKEKTALKDDILSLLKPKALS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S T +ID N L++++ S A+ + LL SLG+L V L E + W++ Sbjct: 121 KSSHTYGYIDPRNNLLVINAGSNAVADSFIELLIDSLGTLGAVRLMGEESPSAIMNRWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G + L + E K D V + K + ++ I + +E G V KL + ++ + Sbjct: 181 DG-LPYDWTLTGQYEFKDPQND-RVAKFKDSEESNPLIDDLLEDGYWVEKLGIRYKDQFN 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNL 293 V+ D +K +KF DEL +NE+ID + R DAD +LM+ LA I L Sbjct: 239 AVIQSDMLIKSIKFDDELLKENEEIDDIEPYARLDADLVLMSQTLAEFIAEL 290 >UniRef50_B5AX95 Putative exonuclease RdgC n=1 Tax=Iodobacteriophage phiPLPE RepID=B5AX95_9CAUD Length = 300 Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 166/302 (54%), Gaps = 6/302 (1%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M FK++ ++RL + L +E L + TPCG DM G+VPP D + + Sbjct: 1 MKPFKSINLFRLPADHGLSLTCIEADLFTKPSTPCGPGDMETRGFVPPAPHMPDQIVYFN 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 ++I + E KI+PS V+KQ +IA +E E+ RK+ + E +++ +L AF Sbjct: 61 QQAVLIHLQTETKIIPSAVVKQEAAKRIASIEKEEGRKVGRKEAKDIQETCRDTLKLTAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 ++ + ID GL+M++ +S KAED L+ LR++LG L + + +T WV Sbjct: 121 TKITTQRAIIDLKMGLVMIEASSTGKAEDMLSALREALGGLNTKLVQINRRPSSAMTFWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 G + F L D E+KS E G + +QDL + E+ H+ GKVVTKLAL+W+ +I Sbjct: 181 FDGPEDE-FLLGDFCEMKS-EESGATAKCSRQDLDAVEVEEHLRTGKVVTKLALEWKDKI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQ--NEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 F + ++ +KR+KF D L+DQ D+D +D F++ L GE+ +I +LI+ LG Sbjct: 239 SFQLTENLEIKRVKFMDILQDQLKGADVDTQD--AMFESSATLFIGEIRLMIADLIDALG 296 Query: 299 GE 300 GE Sbjct: 297 GE 298 >UniRef50_C9YCI4 Recombination-associated protein rdgC n=5 Tax=Comamonadaceae RepID=C9YCI4_9BURK Length = 309 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 158/297 (53%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKN++VYRL S+ ++E L + F CG+ +GW P G L V GQ Sbjct: 2 FKNVIVYRLVSPWSVTQAQLEDALQADRFVECGASQEKSVGWTEPRGQAHGPLVEVVGGQ 61 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 V+ E K +P V+K+ +E ++A++E RK K E L+D+ +LLP AF++ Sbjct: 62 WVLKLMMEVKSVPGSVVKRKVEEQVAQIEVSTGRKPGKKEVRELRDDARLALLPMAFTKQ 121 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 +WID +G +++D S KA++ + L K++ V ++ + + W+ + Sbjct: 122 GSVGVWIDPKSGWLVLDAGSQGKADEVMTALIKAIPDFAVQLVNTQISPAAAMAVWLSTR 181 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 + F + E ELK+ E V+R + L +EE++ HI GK+ T+LA+ W R+ FV Sbjct: 182 ESPTDFSVDRECELKASDESKAVVRYTRHPLDTEEVSQHIALGKMPTRLAMTWNDRVSFV 241 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 + + LK++ F D + ++ + FDAD I+ TGEL+ LI +L+E LGGE Sbjct: 242 LTEALQLKKVTFLDTVFEEASKAAGDGKDDNFDADVIISTGELSQLIPDLMEALGGE 298 >UniRef50_C6MGX0 Putative exonuclease RdgC n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MGX0_9PROT Length = 295 Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 163/300 (54%), Gaps = 9/300 (3%) Query: 2 LWFKNLMVYRL-SREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 +WF+NL VYR+ S I+L + +E+ L++ A PC +M GW+ P S + Sbjct: 1 MWFRNLQVYRITSGNITLNS--LEEALSNHALQPCLQMEMQSRGWMTPR-EESQNFVYAY 57 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 Q +I E+K+LP+ VI Q + +AK+E Q K K + +K+ + L+PRAF Sbjct: 58 GQQWLIALGVEKKLLPAGVINQQAKDHLAKMEQMQGYKPGKKQIRDIKEATIIELMPRAF 117 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 ++ +T WID V +++D AS +KA++ + +L KS+ L + PL + +T W+ Sbjct: 118 TQRHKTYAWIDAVKNRLIIDTASTQKADELVEVLVKSMHGLTLAPLETQTSPSSAMTRWL 177 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 F + + EL+ + ++ ++ L +EE HI AGK V KLA+ W +I Sbjct: 178 SGTDLPSIFSIDRDCELQGMNDEKATVKYTHHVLEAEETARHIRAGKKVIKLAMTWDSKI 237 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ D+ L+R+ D +++ ED + + F +DF +MTGEL+ LI +++ LG E Sbjct: 238 SFVLHDNLQLRRIVPQDIVKESTEDAE-----ELFVSDFAIMTGELSQLITEMVDALGSE 292 >UniRef50_Q0VLT7 Recombination associated protein rdgC n=2 Tax=Alcanivorax RepID=Q0VLT7_ALCBS Length = 301 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 150/270 (55%), Gaps = 2/270 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +W KNL V+ E+++ L PCGSQ G+VPP+ D + + + Sbjct: 1 MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPLKGQ-DPMAYAVD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I ++ ++LP PVIK+ L+ K+ ++ E+ RK+ + EK LK+++ L+PRAF+ Sbjct: 60 GFIFCTYQETARLLPGPVIKELLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +T + IDT +MVD +SA + E+ +A LRK++G+LPV + + + + W+R Sbjct: 120 RSRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLPVAYPAPNSAPYTSFSNWLR 179 Query: 182 SGS-AAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +GF L D ELK + ++G ++ DL EEI H+E G V T++ L WQ + Sbjct: 180 DTKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSL 239 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDRED 270 + + D +KR+K D L++ + +D ED Sbjct: 240 ELDINDKLEIKRIKALDLLQENIDALDAED 269 >UniRef50_B2I7H2 Recombination-associated protein rdgC n=24 Tax=Xanthomonadaceae RepID=RDGC_XYLF2 Length = 302 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 3/290 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++F+NL ++R SL +++ L + P G +M G++ P G + + Sbjct: 1 MFFRNLTLFRFP--TSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQ 58 Query: 62 GQIV-ICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 G + + E+KILP+ V+ L K +++E ++ E+ +KD+++H LLPRAF Sbjct: 59 GDFLWLTVGSEDKILPASVVNDLLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAF 118 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + S+ +D G + VD AS K AE ++ +R LGS P +PL+ E I LT W+ Sbjct: 119 VKNSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFPALPLNAEISIRSMLTSWI 178 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + L DE E+K E G +I+ + Q L EEI H+E GK V+KLAL + Sbjct: 179 AGEPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHV 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALI 290 FV+ DD +++LKF D + DQ E D + DA F LM+ E+ L Sbjct: 239 SFVLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLF 288 >UniRef50_A2SN77 DNA recombination-dependent growth factor n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SN77_METPP Length = 332 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 152/298 (51%), Gaps = 6/298 (2%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKNL VYR+ + E E L F CG+ GWV P G L Q Sbjct: 14 FKNLSVYRIQGDWHPAIAEAEASLQKFRFAECGATQAISAGWVEPRGEKHGPLVEAVGDQ 73 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 ++ + K+LP+ VIKQ ++A+I +++ +AR+ K E +K+ V+ LLP+AFS+ Sbjct: 74 WMLTLCIQTKLLPAGVIKQHVDARIEQIKQREARRPGKKEVREIKEAVILELLPKAFSKK 133 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 +WID N L+ +D AS K + + L K+L L + + + +++W+ G Sbjct: 134 EHISVWIDRKNKLVAIDTASQSKCDTATSALVKTLDGLAIGLIQTQMSPGTCMSQWLMDG 193 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 A GF + E ELKS E ++ + L +E+ H+ GK T+LA+ W R+ F Sbjct: 194 EAPDGFGVERECELKSSDESRSAVKYSRHVLDIDEVKQHLTHGKTPTQLAMTWTDRVSFT 253 Query: 244 MCDDGSLKRLKFCD-ELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 + D +LK++ F + L + D FDA+ ++TGEL+ LI LIE LGGE Sbjct: 254 LTDAMALKKVTFLETPLMKKKAGGD-----DPFDANAAIVTGELSQLIPQLIEALGGE 306 >UniRef50_C4GKZ6 Putative uncharacterized protein n=2 Tax=Neisseriaceae RepID=C4GKZ6_9NEIS Length = 301 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 175/299 (58%), Gaps = 4/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK L Y ++ E + + +L+ F P D G+ P S S L A+ Sbjct: 1 MWFKQLNFYPINLETLPDLDTLTAKLSEAEFAPITGLDWFSEGFTAPQ-SFSPELVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I +K EK+LP+ VI++ L+ K+A+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTWSIALKKAEKVLPASVIREILDDKVAEIQTAEARSVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPV-VPLSMENPIELTLTEWV 180 R S+T DT +G ++++ A+A KAE+ L+ LR++LG L +P + ++P L +TEW+ Sbjct: 120 RSSRTQAICDTKHGYLLINNANANKAENLLSKLREALGGLEARLPQTQQSPSSL-MTEWL 178 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 G+ GF+L D E+K + VI+ KQDLT+ E+ H++ GK VT+L L W+++I Sbjct: 179 LQGACQGGFELDDNCEIKGSGDVVPVIKIAKQDLTAPEVVQHLKDGKTVTQLGLVWREQI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ + +LKR+++ D L+++ E +D A A ILM + +I L++ LGG Sbjct: 239 AFVLDANFALKRIQYLDVLQEEAEQ-HGDDAASLAFASQILMAESIGNMISELVDYLGG 296 >UniRef50_A1VR42 Putative exonuclease, RdgC n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VR42_POLNA Length = 351 Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 163/306 (53%), Gaps = 11/306 (3%) Query: 4 FKNLMVYRLSREISLRA-EEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANG 62 FK+ +R++ + L + +E+ L S F PCG+ +GWVPP G+ S + Sbjct: 25 FKSASFFRIATDFVLPPLDALEEALQSAQFMPCGATQAESVGWVPPRGNKSTVMVETVGT 84 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQAR-KLKKTEKDSLKDEVLHSLLPRAFS 121 Q+++ E + LP+ +K +E ++ K + E R ++ K K+E + SLLPRAF+ Sbjct: 85 QVILRLSIERRPLPASAVKAEVEERVEKYKQETGRERVSAKIKKEFKEEAIQSLLPRAFT 144 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLP-VVPLSMENPIELTLT--- 177 + S T +WID VN ++VD S A+ ++ L ++L +P P M P++ T+ Sbjct: 145 KRSSTTLWIDPVNKFLVVDSGSLTGADKVVSQLIEALSEIPGTRPGLMAKPVQTTMAAGA 204 Query: 178 ---EWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLAL 234 W+ S A F + + ELK + +R + L +E+ HI +GKV T+LA+ Sbjct: 205 AMAHWLASREAPVSFTVDRDCELKMPDDQKSTVRYSRHTLEIDEVAEHIASGKVPTQLAM 264 Query: 235 DWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLI 294 W +R+ FV+ D +K++K D + D ++ ++D DA + TGEL+ LI +L+ Sbjct: 265 TWNERVSFVLTDMAQIKKIKLLDVVLDGVQENGKDDDGFDADAAIV--TGELSDLIPDLL 322 Query: 295 EGLGGE 300 E LGGE Sbjct: 323 EALGGE 328 >UniRef50_A6GUC5 Recombination associated protein n=5 Tax=Betaproteobacteria RepID=A6GUC5_9BURK Length = 327 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 159/299 (53%), Gaps = 5/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++RL++ E +E +LA A CG D+ GWV P + + H + Sbjct: 29 MWFKNLFIFRLTK-WEETPESLEDKLAKQALQACGGMDLQTRGWVSPK-AEGEPFVHRSG 86 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q++I E+K+LPS VI Q +A+ ++E + K + + +K+ V LLPRAF+ Sbjct: 87 QQLLISLGLEKKLLPSTVINQFTKARATEIEEREGYKPGRKQMKEIKEAVTDELLPRAFA 146 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 S+ WID +++D AS KA++ + +L KS+ + + + + + +T W+ Sbjct: 147 IRSRINAWIDLEGKWLVIDAASPAKADELIGMLMKSVEGVAMALVKTKISPTVAMTAWLA 206 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 F + + ELKS E +R K L SEEI HI+ GK VTKLA+ W ++ Sbjct: 207 ENDNPPPFTVDQDCELKSRGEQAATVRYVKHSLESEEIAKHIKGGKDVTKLAMTWADKVS 266 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ ++ +KR+ D +++Q FD+DF LMTGEL LI LI LGGE Sbjct: 267 FVLHENLQVKRVAPLDVIKEQAA---LSADDDAFDSDFALMTGELRKLIPGLINVLGGE 322 >UniRef50_A3Y751 Recombination-associated protein RdgC n=2 Tax=Marinomonas RepID=A3Y751_9GAMM Length = 300 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 163/286 (56%), Gaps = 3/286 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN+ ++L+ ++ E+ +LA CGSQ+ GW+P + +S+ +N Sbjct: 1 MWFKNVQFFQLTDTDAIDTNELIDKLADFPLKECGSQEEYSFGWMP-LIRNSEQWYLASN 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++I A KEEK+LPS V+++ LE KI+++E + RK+ + EK +KDE++ +L P+AFS Sbjct: 60 KCVLIRAGKEEKVLPSSVVREELEIKISEIELIEGRKVGRKEKADIKDELVFTLRPKAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPL-SMENPIELTLTEWV 180 + S ++D L++++ +A E L+ +LGS P+ PL E+P L ++ W+ Sbjct: 120 KRSDIWAYLDMEAKLLVINSTNASMTELLFKQLQTTLGSFPMAPLMPQESPSGL-MSNWL 178 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +E E++ E+ IR K + SE++T HIE G V LAL W +++ Sbjct: 179 LKNELPASLNTGEECEIQDGSEEKASIRFKALEPLSEDVTRHIEQGMRVKSLALKWTEKL 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGEL 286 FV+ +D SL+++KF D ++++ + + DA+F LM+ EL Sbjct: 239 NFVLHEDLSLRKIKFDDTIKEKAFNDSQGGGLSDLDANFALMSLEL 284 >UniRef50_Q1N0M2 Recombination associated protein n=1 Tax=Bermanella marisrubri RepID=Q1N0M2_9GAMM Length = 306 Score = 149 bits (377), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 167/299 (55%), Gaps = 12/299 (4%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPC-GSQDMAKMGWVPPMGSHSDALTHVANG 62 +N Y L++ + A + +L+ F PC +Q+M++ GWV P ++D L + A+G Sbjct: 3 IRNFYWYALTKPLDDTAS-VAGKLSKAPFAPCMATQEMSQ-GWVAP-APNTDDLVYEAHG 59 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122 I++ ++E+++LP+ VI L ++ E + + K +KDEV+ LLPR+F++ Sbjct: 60 AILLMLKQEKRLLPASVINDFLAERVEAFEQAEGYAPSRKIKQQMKDEVVQDLLPRSFTK 119 Query: 123 FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV-R 181 + + I G + V +S+K A+D A LR++LGSLP+ ++ E T+T+W+ + Sbjct: 120 SLRLPVMIMPRQGWLFVLSSSSKTADDVTAFLRETLGSLPIALMNSEVSPAFTMTQWLQQ 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + + + +E EL E +R KKQ L SEE+T H++A K V KLAL W++ IQ Sbjct: 180 PKTLPDNWTVGEEVELVDAEE--ASVRIKKQSLYSEEVTAHLDASKQVAKLALLWREDIQ 237 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDID-REDFAQRFDADFILMTGELAALIQNLIEGLGG 299 ++ DD S+KR+K E +D+D ED RF +F + L L +L++ LGG Sbjct: 238 ILLQDDLSIKRIKSIAE----PDDMDMPEDPLARFAHEFAVTCQWLKPLCDDLLKALGG 292 >UniRef50_A4BHD8 Recombination-associated protein RdgC n=1 Tax=Reinekea blandensis MED297 RepID=A4BHD8_9GAMM Length = 295 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 164/296 (55%), Gaps = 11/296 (3%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL V+ + AE++ ++LA FTP + GWVP S V+ Sbjct: 1 MWFKNLQVFSFTDAFQFTAEQVNERLAQHEFTPISQMQESSFGWVPSFKDSSLFCEQVS- 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G++ A+ ++KILP+ VI L K+ +E E+ R+ + E++ LK+++ LLP+AF+ Sbjct: 60 GRLFFTAQIQDKILPASVINDHLIEKLDAIELEEGRRPARKEREQLKEDIRAQLLPKAFN 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + Q WID G ++V+ +S K A+D A LR++LG+L V+P + LTEW Sbjct: 120 KTRQLSAWIDPAKGWLVVNASSDKSADDFTAHLREALGTLQVIPFAKSTSGSDLLTEWFM 179 Query: 182 SGSAAQGFQLLDEAELK-SLLEDGGV-IRAKKQDLTSEEITNHIEAGKVVTKLALDWQQR 239 + L EA+L+ ++++D V R K DL++ EI +E+G V ++A++ Sbjct: 180 DATTRPADTEL-EADLELTMVQDPTVKARFKNLDLSAPEIQQALESGMRVRQMAMNLIDH 238 Query: 240 IQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIE 295 QFV+ + +KRLK+ + L ++ D ED R DA ILM+ ++ L+Q LIE Sbjct: 239 CQFVINEKLQIKRLKYQEALLEKAH--DNED--PRSDA--ILMSDTVSHLLQ-LIE 287 >UniRef50_A4JWD6 Putative exonuclease, RdgC n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JWD6_BURVG Length = 369 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 159/308 (51%), Gaps = 26/308 (8%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +++L+ + ++ A+ + +LA AF+PC +G+V P + N Sbjct: 1 MWFKNLTLFKLT-DFAIDAQTLSDKLAKAAFSPCTDLQEKSVGFVTPRPDSPH--VYAVN 57 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G+ +I R +++ LP V+K+ + + A+ E E K + LK++ + +LLP+AF Sbjct: 58 GEFLIALRTQKRNLPGSVVKEEVARRAAEYEKEYGHKPGRKMLKELKEQSIDALLPQAFK 117 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTL-ALLRKSLGSLPVVPLSMENPIELTLTEWV 180 T WI GL+++D AS A+D + ALLR ++E P++L Sbjct: 118 TSRTTHAWISPKAGLLVIDTASTAIADDFIGALLR-----------AIEVPVKLHPLATN 166 Query: 181 RSGSAAQGFQLLDE--------AELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKL 232 + SAA LLDE ++ + GG I+ + ++ +EAG+ V+ L Sbjct: 167 TAPSAAMSKWLLDEPPSFLTIDSDAVFVTTHGGNIKYSNTPVEGDDAKRQLEAGQRVSSL 226 Query: 233 ALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQN 292 AL W ++ FV+ G++KR+K D L+ + D ED F +DF+LM G LA ++ Sbjct: 227 ALTWDDKVSFVLAGKGTIKRVKALDVLKGEAADKADED---SFASDFLLMAGTLAQMVGE 283 Query: 293 LIEGLGGE 300 L+E LGGE Sbjct: 284 LVESLGGE 291 >UniRef50_Q5ZW99 Exonuclease involved in removal of stalled replication fork n=6 Tax=Legionella RepID=Q5ZW99_LEGPH Length = 314 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 8/304 (2%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 ++WF N ++++ + ++ L A PC GWVP + + H Sbjct: 2 IMWFNNALMFQYKLDGGC---DLNHSLTEEALKPCPPHARFTYGWVP---AFEQEMVHEV 55 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 G +IC KEE+ILP VI + L+ KI ++EA Q R +K+ EK + +++ LLP++F Sbjct: 56 AGSTLICLGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSF 115 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + + +D+V+ ++++ +S +A + LRKS+ + + PL++ + L EW+ Sbjct: 116 CVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLNLTENLALRFAEWI 175 Query: 181 RS-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQR 239 S + FQL + L SL ++ + K +L +EEI + G +++L W++R Sbjct: 176 HSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKER 235 Query: 240 IQFVMCDDGSLKRLKFCDELRDQNEDIDR-EDFAQRFDADFILMTGELAALIQNLIEGLG 298 IQF + D + K+LK D L D +I + E+ QR DA L++GEL L L++ Sbjct: 236 IQFTLTQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFV 295 Query: 299 GEAQ 302 A+ Sbjct: 296 NHAE 299 >UniRef50_D1RMX8 Putative exonuclease n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX8_LEGLO Length = 232 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 2/215 (0%) Query: 84 LEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCAS 143 LE K E R +++ E LK+E+ LLP+AFS + +IDT + ++ A+ Sbjct: 2 LEEKNNAFELNHKRPMRRAEILQLKEEIKFDLLPKAFSVQKKDWFYIDTNKQWLFINSAN 61 Query: 144 AKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV-RSGSAAQGFQLLDEAELKSLLE 202 KA + + LL K+LGSL PL + + W+ + S +G L L + E Sbjct: 62 PTKASEVITLLTKALGSLDAAPLMPNSDLSTLFARWLHQPTSFPEGLMLAKSYVLVTSGE 121 Query: 203 DGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQ 262 D K + EE+T ++ G V+ + L WQ+R+QFV+ ++ LKRLK D L + Sbjct: 122 DKSYYTCKDIEENIEELTALLDQGYTVSSIELIWQERVQFVLNNNFLLKRLKCLDYLDEA 181 Query: 263 NEDIDREDFAQ-RFDADFILMTGELAALIQNLIEG 296 +D D++D Q +FDA+F L+TGEL LIQ L++ Sbjct: 182 FKDKDKQDNDQEQFDANFSLLTGELRDLIQFLMDA 216 >UniRef50_B0U148 Recombination associated protein n=19 Tax=Francisella RepID=B0U148_FRAP2 Length = 288 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 139/291 (47%), Gaps = 18/291 (6%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++FKNL ++++ + + E + +AF PC + + G+ P L N Sbjct: 1 MFFKNLTAFKIT---DINIDIFEDSMNKLAFIPCSNSQKSSRGFTNPFIKDEQCLFKF-N 56 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 C EEKILP+ VI Q + I +LE R + K EK +K+++ LLP AFS Sbjct: 57 HLAAFCLLTEEKILPAQVINQQAQEYIQELEL--TRYVSKKEKTQIKEDMEQKLLPLAFS 114 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSL-PVVPLSMENPIELTLTEWV 180 +F + ++D N +++D AS K+ + L LL + PV+ + LTEW+ Sbjct: 115 KFRKIHGYLDLTNNYLIIDSASEKQITEVLDLLHRCEARFEPVIKEETD-----ILTEWL 169 Query: 181 RSGSAAQGFQLLDEAELKSLLEDG-GVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQR 239 + ++ ++ +L S + D I + + ++ I + I++G +T+LA+ W+++ Sbjct: 170 VEDTYPVDIEIAEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITELAITWKEK 229 Query: 240 IQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALI 290 + K +KF D ++D N +ED + D +LM A LI Sbjct: 230 LAMTTNTKLQFKSIKFLDGIKDLN----KEDNVGH-EVDLLLMADIFAELI 275 >UniRef50_D0KZJ6 Putative exonuclease RdgC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZJ6_HALNC Length = 296 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 136/299 (45%), Gaps = 21/299 (7%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++F+ L VYRL E + L F+P Q +GW +G + H + Sbjct: 1 MFFRQLSVYRLESECP-DFSTLNTALKEHPFSPTRPQQAESVGWQTAIG---EQYVHETD 56 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I ++EE+ +PS V++ + ++ A + K EK +++D VL LLP+AF Sbjct: 57 GAARIVLQREERSVPSSVVRDMADQRLLA-RAGTTGEPSKAEKIAMRDAVLLELLPQAFP 115 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S T ID N + D +A K E T LR+ +G +VP I L W+ Sbjct: 116 RQSNTQAIIDRKNQQVWFDTLTATKIERTSNQLREQIGQWRMVPFFGIQDISAHLASWL- 174 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ GF + + A+L L E GG + K L + H+ G V +L L W+++I+ Sbjct: 175 LGTPPTGFDIGEGAKLVDLRE-GGTVTVSKLALPDPHVVAHLHEGMKVDQLELIWREQIR 233 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFI-------LMTGELAALIQNL 293 F + DG L ++K E +D +D + D LM G L LIQ+L Sbjct: 234 FTLRADGGLAKIK-------PTELLDTDDSGEMIDDADQQLDADQRLMVGALRQLIQDL 285 >UniRef50_Q5NWY5 Predicted DNA recombination-dependent growth factor C (Exonuclease) n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWY5_AZOSE Length = 314 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 9/287 (3%) Query: 21 EEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVI 80 EE+E+ LAS F+ G D+ +GWV P + L H + ++ KE KI+P+ + Sbjct: 18 EELEEVLASRKFSGIGQLDVDHLGWVNPRELENGPLVHAVDSIFLLALSKETKIVPASTV 77 Query: 81 KQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVD 140 K+ L A A + R + E+ +LK++V SLLP A +R QT + ++V Sbjct: 78 KKKLAAAEADATKREGRPPSRKERKALKEQVYESLLPGAPTRIKQTFGVLIPPKKQLLVL 137 Query: 141 CASAKKAEDTLALLRKSLGSLPVVP----LSMENPIELTLTEWVRSGSAAQGFQLLDEAE 196 SAK ED + S + P L P L +TEW+ + GF L + E Sbjct: 138 TTSAKCLEDFHGVFTDSFMKRGMRPSFRKLRTVQPPSLKMTEWLLNNECDGGFVLGEHCE 197 Query: 197 LKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFC 256 L + +R +L EI H+ GKV KL L + F++ + + L F Sbjct: 198 LT---HEKSKVRYTALELDRPEIREHLLEGKVPVKLGLRHESTTSFIISCGSADEDLGFS 254 Query: 257 D-ELRDQNEDIDREDFA-QRFDADFILMTGELAALIQNLIEGLGGEA 301 D + + E A + FD+D + E ++ L E GG A Sbjct: 255 KIHYGDNDGKTEGEGTADEVFDSDLVFSVTEFLGIVNELFEAFGGIA 301 >UniRef50_UPI000045D917 COG2974: DNA recombination-dependent growth factor C n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D917 Length = 109 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M WFKNLM YRL++ + +E+QL AFTPCG DM+K GW P+ S SD+L Sbjct: 1 MFWFKNLMTYRLTQAVDFS--NLEEQLKQTAFTPCGKSDMSKFGWSAPL-SASDSLCFRQ 57 Query: 61 NGQIVICARK 70 +I + K Sbjct: 58 GSNTLIVSHK 67 >UniRef50_B7WYI4 DNA recombination-dependent growth factor C-like protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WYI4_COMTE Length = 167 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Query: 227 KVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGEL 286 K+ +KLA+ W R+ FV+ + +K + D + D N D FD D + TGEL Sbjct: 64 KLPSKLAMTWDDRVSFVLTEGLQIKNITLLDAVMDGNSKDD-----SGFDTDVAIATGEL 118 Query: 287 AALIQNLIEGLGGEAQ 302 ++L+ +LIE LGGE + Sbjct: 119 SSLLPDLIEALGGEGR 134 >UniRef50_B7MW52 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=B7MW52_ECO81 Length = 355 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 111/222 (50%), Gaps = 15/222 (6%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWV--PPMGSHSDALTHVAN 61 F+N +VYR + S++A +E L + ++ G + ++ +V P G + +T ++ Sbjct: 56 FRNAIVYRATLP-SIQA--IEGHLLELPYSEIGETEFSRSSFVENPVTG---ELVTPISG 109 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ R ++KI+P V+ + ++I +E KLK+ E+ ++ D V L +AF Sbjct: 110 GYAMVI-RHDQKIIPRHVVMKEANSRIQTIENMSGNKLKRAERLAIIDNVRVDLCKQAFV 168 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLS---MENPIELTLTE 178 + + + T L++++ + A A+L K +GS+ ++ ++N + L Sbjct: 169 KSTLILALYSTDEKLLVINTTNKIIAGMVCAMLIKVVGSVKTETINISDIKNGLTTRLNN 228 Query: 179 WVR-SGSAAQGFQLLDEAELKSLLEDGGVIR--AKKQDLTSE 217 ++ + +A +GF + + +L + +IR A+ + + SE Sbjct: 229 YINGAANAFEGFTVGNYIQLSRYADQKEIIRYSAEHESIQSE 270 >UniRef50_A8TCH0 Recombination associated protein (Fragment) n=1 Tax=Vibrio sp. AND4 RepID=A8TCH0_9VIBR Length = 342 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 18/290 (6%) Query: 23 MEKQLASMAFTPCGSQDMAKMGWVPPMG-SHSDALTHVANGQIVICARKEEKILPSPVIK 81 +EK+ P +G+V PM S D + + +E+KI PS V K Sbjct: 18 LEKRFEEFRAKPLSDTGTESLGFVSPMCLSRDDLIIKLGCLYGFRLKIQEKKISPSKV-K 76 Query: 82 QALEAKIAKLEAEQA----RKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLI 137 + + +++K+ E+ KL+ +K+E+L +P + +IDT +G + Sbjct: 77 EVVSQRVSKIMEEKPGLDQAKLENEYYGQVKEEILRLEIPSV----NYVTAFIDTESGYL 132 Query: 138 MVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAEL 197 V+ S K+ L LLR SLGS +P+ E L+ ++ F +D E Sbjct: 133 FVNDKSDKRCAQLLKLLRHSLGSFVALPVDTEYQPSDVLSRALQGEGKLSDFLRVDYYEQ 192 Query: 198 KSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLAL------DWQQRIQFVMCDDGSLK 251 + D + + + E+ + GK +T++ L D I D Sbjct: 193 IKAVGDKATKQISFKGIQIEKDELEVLKGKSITQMGLVFCANEDETWAITIASKRDKYFY 252 Query: 252 RLKFCDELRDQNEDIDR--EDFAQRFDADFILMTGELAALIQNLIEGLGG 299 L F + + + N DR F+A++++ L +I +L E GG Sbjct: 253 ILNFVEPIPNSNLLADRLFSTCDDDFNANWLITADRLNRIIYSLNESFGG 302 >UniRef50_A1U7Y4 DNA recombination-dependent growth factor C-like n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7Y4_MARAV Length = 290 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/305 (20%), Positives = 135/305 (44%), Gaps = 23/305 (7%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGW-----VPPMGSHSDALTHV 59 K L +Y++ + EEME + C + + +G+ +P +H Sbjct: 3 KQLRIYQIGDDNPPSIEEMEAVANNYPARECQHLEQSTIGFREFDTIPDTRVIQLEGSHF 62 Query: 60 ANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRA 119 +++ R +P +++ L+ ++ + E+ + ++ K + ++ E++ LP+ Sbjct: 63 IYAELLAFKRS----VPKSFLERELKKRVKQRES-RGEEVAKGDYKEIRAEIVREQLPKM 117 Query: 120 FSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEW 179 + T + ++ + +S A+ + LLR++ + P+ +E+ L EW Sbjct: 118 PQSETVTPIVFQAISKHCWIGASSDGGADAAITLLRRAGLNFAFTPIFEGINMEMWLMEW 177 Query: 180 -VRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQ 238 ++ G L ++A++K LE I +DL E+ + + + + L L + Sbjct: 178 MLQRQELPAGMILGEKAKIKDELEPKSTITINNEDLRDSEL-QAVASSRSIAALELHC-E 235 Query: 239 RIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 ++ F++ DGSLK +K+ E++D D D A R A ++L+ E ++ L +G Sbjct: 236 KMTFMLHRDGSLKSIKY--EIQDDTFD----DLAHR--AGYLLL--ETDNTLKTLFTAVG 285 Query: 299 GEAQR 303 A + Sbjct: 286 APANQ 290 >UniRef50_A3JHF7 Recombination associated protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JHF7_9ALTE Length = 321 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 2/149 (1%) Query: 50 GSHSDALTHVANGQ-IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLK 108 G+ + T + NG+ I + + I+P PV+++ + KI + + + +K +K Sbjct: 52 GTDEEFATPLYNGRWIHLQIANFKPIIPGPVVRRHVAEKIKEFTKQHGEEPGSKKKREIK 111 Query: 109 DEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 ++V +L +AF + + + D+ + ++ S + L +LR+ LGSLP VP+ Sbjct: 112 EQVRDTLRQQAFQKETIHQVIFDSKTNQVWLEATSETVQTEILRVLRRGLGSLPAVPVLE 171 Query: 169 ENPIELTLTEWVRS-GSAAQGFQLLDEAE 196 + W+ +GF + D A+ Sbjct: 172 VANLPSIFAGWIAGERDLPEGFHVGDSAK 200 >UniRef50_D2K0C7 Recombination-associated protein n=1 Tax=Staphylococcus phage SA1 RepID=D2K0C7_9CAUD Length = 358 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 18/197 (9%) Query: 24 EKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQA 83 E +M F G + +K P IV K E++LP ++ Sbjct: 68 EASYKTMGFAAYGEEVDSKFALAIP-----------GTNAIVFQIEKRERVLPGVSVRNE 116 Query: 84 LEAKIAKLEAEQARKLKKTEKD--SLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDC 141 + ++A L ++ + KD +KD+V +L A R S+ + + + V Sbjct: 117 VVKRMAALREKEIEGWEPNRKDWAQMKDDVEAEMLKHAPIRPSRVNVILSA--PFVYVFT 174 Query: 142 ASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLL 201 +SAK AE+ AL+R +LG+ PV L P E L + ++ Q + +A + Sbjct: 175 SSAKTAEECSALIRTALGTWPVEHLL---PSEYELRQLMQRAVLGQQDGIKGDAFIHLKH 231 Query: 202 EDGGVIRAKKQDLTSEE 218 +DG ++ K D+ +E Sbjct: 232 DDGDDVKMKDTDIFKDE 248 >UniRef50_Q7WXD3 Putative uncharacterized protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WXD3_RALEH Length = 144 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 178 EWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDW 236 +W+ +A GF + E EL+S E +R + L +E + HI AGK T+LA+ W Sbjct: 2 QWLAGDAAPSGFTVDQEIELQSGAESKATVRYVRHPLDAENLRRHIAAGKRCTRLAMTW 60 >UniRef50_Q7Y3W9 Recombination associated protein n=1 Tax=Yersinia phage PY54 RepID=Q7Y3W9_9CAUD Length = 325 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 23/173 (13%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGW---VPPMGSHSDALT 57 M FK Y EI L A+ M + + AF + GW VP D Sbjct: 6 MKMFKTCFPYL--TEIELPAD-MAELVEKKAFDGLTDSARSGFGWSKIVP------DVRM 56 Query: 58 HVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLP 117 +++G+ ++ RK E++ ++Q +E + K E D L E H+ Sbjct: 57 IISDGRALLLYRKSERVENRAAVQQLVEERQKKAEENGI-----VVSDDLLREFEHTATN 111 Query: 118 RAFSRFSQTMMW-----IDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVP 165 RF+ W I V I V A+A K ED L+LLRK+LGSL P Sbjct: 112 EII-RFAPLKTWSAYILICPVEKHIYVSAANAAKCEDALSLLRKTLGSLYATP 163 >UniRef50_C0SQP8 Putative conjugation-related ATPase n=1 Tax=Lactobacillus brevis RepID=C0SQP8_LACBR Length = 904 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 11/156 (7%) Query: 137 IMVDCASA----KKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLL 192 I +CA+ K T + KSLG + S ++ T+ S+ G LL Sbjct: 668 IESNCANTVYILTKELKTAETISKSLGQTTITSYSHQSRDSFGATQQDFGNSSDTGVDLL 727 Query: 193 DEAELKSL-LEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLK 251 EL L + + V+R K+ LT ++ N+ + TK+ WQ Q D GSL+ Sbjct: 728 SATELMHLNMGESLVLRTKRNSLTGADVRNNPIFNRNTTKMPQRWQFLGQTFYEDSGSLQ 787 Query: 252 RLKFCDELRDQNEDIDREDFAQRFDADFILMTGELA 287 L L ID + ++D + IL+ L Sbjct: 788 ALSTSPAL------IDLQALGYQYDEELILIGDPLG 817 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5EWS4 Recombination-associated protein rdgC n=185 Tax=... 440 e-122 UniRef50_A7MT92 Recombination-associated protein rdgC n=51 Tax=V... 425 e-117 UniRef50_A0YFL6 Recombination-associated protein RdgC n=1 Tax=ma... 420 e-116 UniRef50_A1SWV9 Recombination-associated protein rdgC n=4 Tax=Ga... 417 e-115 UniRef50_B3PBT6 Recombinaison associated protein n=2 Tax=Gammapr... 412 e-114 UniRef50_A3JCB9 Recombination-associated protein RdgC n=3 Tax=Ma... 412 e-114 UniRef50_Q21NJ1 Recombination-associated protein rdgC n=1 Tax=Sa... 409 e-113 UniRef50_Q60AJ9 Recombination-associated protein RdgC n=1 Tax=Me... 404 e-111 UniRef50_C4ZKX6 Putative exonuclease RdgC n=1 Tax=Thauera sp. MZ... 403 e-111 UniRef50_B0KTR8 Recombination-associated protein rdgC n=24 Tax=r... 392 e-108 UniRef50_C4K8J6 Recombination-associated protein rdgC n=1 Tax=Ca... 390 e-107 UniRef50_Q486R8 Recombination-associated protein rdgC n=1 Tax=Co... 390 e-107 UniRef50_Q2BMW7 Putative uncharacterized protein n=1 Tax=Neptuni... 389 e-107 UniRef50_A4A8V5 Recombination-associated protein RdgC n=3 Tax=un... 389 e-107 UniRef50_A7BMB4 Recombination associated protein RdgC n=2 Tax=Be... 388 e-106 UniRef50_Q478Z5 Recombination-associated protein rdgC n=3 Tax=Rh... 386 e-106 UniRef50_B5JTM5 Recombination associated protein n=1 Tax=gamma p... 384 e-105 UniRef50_A3QGL9 Recombination-associated protein rdgC n=2 Tax=Ga... 383 e-105 UniRef50_Q0F2D9 Recombination associated protein n=1 Tax=Maripro... 378 e-103 UniRef50_A1WYS1 Recombination-associated protein rdgC n=4 Tax=Ec... 377 e-103 UniRef50_A4Y4Y9 Recombination-associated protein rdgC n=26 Tax=G... 376 e-103 UniRef50_Q2SCW6 DNA recombination-dependent growth factor C n=1 ... 375 e-103 UniRef50_A5UGC4 Recombination-associated protein rdgC n=48 Tax=G... 375 e-102 UniRef50_C5S756 Putative exonuclease RdgC n=1 Tax=Allochromatium... 369 e-101 UniRef50_A0Z347 Recombination associated protein n=2 Tax=unclass... 368 e-100 UniRef50_C9YCI4 Recombination-associated protein rdgC n=5 Tax=Co... 367 e-100 UniRef50_Q8H9Q5 ORF10 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q5_9CAUD 367 e-100 UniRef50_Q15X11 Recombination-associated protein rdgC n=4 Tax=Al... 366 e-100 UniRef50_A4JTE0 Putative exonuclease, RdgC n=1 Tax=Burkholderia ... 360 3e-98 UniRef50_Q8L2C7 DNA recombination protein n=2 Tax=Enterobacteria... 359 8e-98 UniRef50_Q3II43 Recombination-associated protein rdgC n=3 Tax=Al... 356 8e-97 UniRef50_B1K4Q5 Recombination-associated protein rdgC n=44 Tax=B... 353 4e-96 UniRef50_A3EHV2 Recombination-associated protein RdgC n=2 Tax=Vi... 353 5e-96 UniRef50_A3WJE4 DNA recombination-dependent growth factor C n=2 ... 352 6e-96 UniRef50_C6MGX0 Putative exonuclease RdgC n=1 Tax=Nitrosomonas s... 351 3e-95 UniRef50_A6GUC5 Recombination associated protein n=5 Tax=Betapro... 347 3e-94 UniRef50_A2SN77 DNA recombination-dependent growth factor n=1 Ta... 346 5e-94 UniRef50_C0DWI1 Putative uncharacterized protein n=1 Tax=Eikenel... 342 7e-93 UniRef50_O87408 Recombination-associated protein rdgC n=29 Tax=N... 341 1e-92 UniRef50_A3Y751 Recombination-associated protein RdgC n=2 Tax=Ma... 333 4e-90 UniRef50_B2I7H2 Recombination-associated protein rdgC n=24 Tax=X... 330 5e-89 UniRef50_B5AX95 Putative exonuclease RdgC n=1 Tax=Iodobacterioph... 328 2e-88 UniRef50_C4GKZ6 Putative uncharacterized protein n=2 Tax=Neisser... 326 6e-88 UniRef50_Q0VLT7 Recombination associated protein rdgC n=2 Tax=Al... 324 3e-87 UniRef50_A2SM13 DNA recombination-dependent growth factor n=19 T... 323 4e-87 UniRef50_C7RD57 Putative exonuclease RdgC n=1 Tax=Kangiella kore... 321 2e-86 UniRef50_A4JWD6 Putative exonuclease, RdgC n=1 Tax=Burkholderia ... 316 5e-85 UniRef50_Q1N0M2 Recombination associated protein n=1 Tax=Bermane... 315 2e-84 UniRef50_A1VR42 Putative exonuclease, RdgC n=1 Tax=Polaromonas n... 309 9e-83 UniRef50_Q1QVI8 Putative exonuclease, RdgC n=1 Tax=Chromohalobac... 309 1e-82 UniRef50_A4BHD8 Recombination-associated protein RdgC n=1 Tax=Re... 303 5e-81 UniRef50_Q5ZW99 Exonuclease involved in removal of stalled repli... 290 4e-77 UniRef50_D0ZDE3 Recombination-associated protein RdgC n=1 Tax=Ed... 278 2e-73 UniRef50_Q5NWY5 Predicted DNA recombination-dependent growth fac... 270 4e-71 UniRef50_D0KZJ6 Putative exonuclease RdgC n=1 Tax=Halothiobacill... 251 2e-65 UniRef50_B0U148 Recombination associated protein n=19 Tax=Franci... 251 3e-65 UniRef50_D1RMX8 Putative exonuclease n=1 Tax=Legionella longbeac... 218 2e-55 UniRef50_A8TCH0 Recombination associated protein (Fragment) n=1 ... 207 4e-52 UniRef50_A1U7Y4 DNA recombination-dependent growth factor C-like... 196 7e-49 UniRef50_A3JHF7 Recombination associated protein n=1 Tax=Marinob... 173 6e-42 UniRef50_B7MW52 Putative uncharacterized protein n=2 Tax=Escheri... 172 2e-41 UniRef50_B7WYI4 DNA recombination-dependent growth factor C-like... 88 4e-16 UniRef50_UPI000045D917 COG2974: DNA recombination-dependent grow... 78 3e-13 Sequences not found previously or not previously below threshold: UniRef50_D2K0C7 Recombination-associated protein n=1 Tax=Staphyl... 85 2e-15 UniRef50_Q7WXD3 Putative uncharacterized protein n=1 Tax=Ralston... 85 3e-15 UniRef50_B6XBN9 Putative uncharacterized protein n=1 Tax=Provide... 83 1e-14 UniRef50_Q7Y3W9 Recombination associated protein n=1 Tax=Yersini... 81 4e-14 UniRef50_Q2LSX3 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 76 2e-12 UniRef50_A6DPQ5 Hypothetical cytosolic protein n=1 Tax=Lentispha... 73 1e-11 UniRef50_B5E9U0 Putative uncharacterized protein n=8 Tax=Desulfu... 72 2e-11 UniRef50_A0LPT8 Conserved hypothetical cytosolic protein n=1 Tax... 70 1e-10 UniRef50_D0J5F2 Putative exonuclease, RdgC n=1 Tax=Comamonas tes... 69 3e-10 UniRef50_D2L6Z2 Putative uncharacterized protein n=1 Tax=Desulfo... 64 5e-09 UniRef50_UPI0001698F3A hypothetical protein Epers_24033 n=1 Tax=... 64 7e-09 UniRef50_C0QIP8 Putative uncharacterized protein n=1 Tax=Desulfo... 62 3e-08 UniRef50_D1N7T1 Putative uncharacterized protein n=3 Tax=Bacteri... 60 1e-07 UniRef50_A1AT82 Putative uncharacterized protein n=2 Tax=Desulfu... 60 1e-07 UniRef50_B8FCC1 Putative uncharacterized protein n=1 Tax=Desulfa... 59 2e-07 UniRef50_A8ZU01 Conserved hypothetical cytosolic protein n=1 Tax... 58 3e-07 UniRef50_C7LXS9 Putative uncharacterized protein n=5 Tax=Desulfo... 58 3e-07 UniRef50_C0GT68 Putative uncharacterized protein n=1 Tax=Desulfo... 58 4e-07 UniRef50_Q1D7N9 Putative uncharacterized protein n=2 Tax=Cystoba... 57 8e-07 UniRef50_B8DP41 Putative uncharacterized protein n=2 Tax=Desulfo... 56 1e-06 UniRef50_B8J039 Putative uncharacterized protein n=8 Tax=Desulfo... 54 5e-06 UniRef50_B8J6K2 Putative uncharacterized protein n=4 Tax=Anaerom... 53 1e-05 UniRef50_Q82WY9 Putative uncharacterized protein n=1 Tax=Nitroso... 52 2e-05 UniRef50_C8QY58 Putative uncharacterized protein n=1 Tax=Desulfu... 49 2e-04 UniRef50_Q6AQD2 Putative uncharacterized protein n=2 Tax=Deltapr... 44 0.005 UniRef50_C5S050 Putative uncharacterized protein n=1 Tax=Actinob... 41 0.041 UniRef50_C6A1F2 NusG transcription antitermination protein n=8 T... 40 0.089 >UniRef50_B5EWS4 Recombination-associated protein rdgC n=185 Tax=root RepID=RDGC_SALA4 Length = 303 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 282/303 (93%), Positives = 295/303 (97%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 MLWFKNLMVYRLSR+I+LRAEEMEKQLASM FTPCGSQDMAKMGWVPPMGSHSDALTH A Sbjct: 1 MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTA 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 NGQI+ICARKEEKILPSPVIKQALEAKI KLEA+Q RKLKKTEKDSLKDEVLHSLLPRAF Sbjct: 61 NGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPL++ENPIELTLTEWV Sbjct: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 RSG+ AQGFQLLDEAELK++LEDGGVIRAKKQDL S+EI HIEAGKVVTKLALDWQQRI Sbjct: 181 RSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 QFVMCDDGS+KRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQ+L+EGLGGE Sbjct: 241 QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE 300 Query: 301 AQR 303 AQR Sbjct: 301 AQR 303 >UniRef50_A7MT92 Recombination-associated protein rdgC n=51 Tax=Vibrionales RepID=RDGC_VIBHB Length = 304 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 180/298 (60%), Positives = 229/298 (76%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN +VYR++RE++ A+++E QLA FTPCGSQD K GWV MG + D +THV+ Sbjct: 1 MWFKNCLVYRVNREVNFNADQLETQLAEFRFTPCGSQDKQKFGWVSAMGRNGDMMTHVSE 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 +I+ICA+KEEK+LP+ VIK +L AK+ +EA++ R LKK EKD+LKD+++ LLPRAFS Sbjct: 61 NRILICAKKEEKMLPASVIKDSLNAKVEAMEAQEGRPLKKKEKDNLKDDIVMDLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S T + I G I+VD +S KKAED LALLRK++GSLPVVP E IE TLTEWV+ Sbjct: 121 RSSHTYVLIMPKEGFILVDASSYKKAEDVLALLRKTMGSLPVVPAIPEVAIETTLTEWVK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +G QG ++DEAELKS+LE+GGVIR KKQ+LT++EI NHI A KVVTKLAL+WQ RI+ Sbjct: 181 TGDTPQGISMMDEAELKSVLEEGGVIRCKKQELTTDEIRNHIAADKVVTKLALNWQDRIE 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 F+M +D +KRLKF DEL+DQN+DI RED A RFDADF LM GE +A + NL E LGG Sbjct: 241 FIMAEDSGIKRLKFSDELKDQNDDIPREDQAARFDADFSLMCGEFSAFLPNLYETLGG 298 >UniRef50_A0YFL6 Recombination-associated protein RdgC n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFL6_9GAMM Length = 307 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 124/299 (41%), Positives = 195/299 (65%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYR ++ + EE+ + L + F PCGSQD+++ GWVPP+G H H AN Sbjct: 1 MWFKNLQVYRFTKPFDMTPEELSEALQTKEFQPCGSQDLSRYGWVPPLGHHGTDFVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++CA+K++K+LP+ VI + + KI ++A + R + + E+ +LKD+V LLPRA Sbjct: 61 GFVMVCAKKQDKLLPAAVINEMVGEKIVDIQANEGRAVGRKERQNLKDDVTFELLPRALV 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +I GL++V+ +S+K+AE+ ++ LR+++GS+PV+P+ N + T+T+W+ Sbjct: 121 KSSLQFAFIAVQQGLLIVNASSSKRAEELISFLRETIGSVPVIPVVANNIPQHTMTQWLL 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 SG Q F+ E EL+ ++GGVIR K Q+LTS EI +HI+AG V+KL L W I Sbjct: 181 SGQPPQAFEFGHECELRDPSDEGGVIRCKHQELTSAEIASHIKAGMYVSKLGLCWNGGID 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D ++KRL F + ++++ +D D A +FD DF +MT EL ALI L + GGE Sbjct: 241 FMVDDQLAVKRLGFGEIIQEKANQLDAVDAAAQFDQDFAVMTLELVALIGALTDVFGGE 299 >UniRef50_A1SWV9 Recombination-associated protein rdgC n=4 Tax=Gammaproteobacteria RepID=RDGC_PSYIN Length = 302 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 156/299 (52%), Positives = 214/299 (71%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++FKNL VYR +R + + +E+ L F PCGSQD++K+GWV PMG TH+A Sbjct: 1 MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAG 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 QI+IC +KEEK+LP+ VIK L ++ +E EQ R LKK EKDSLK+E++ LLPRAFS Sbjct: 61 KQILICLKKEEKMLPAGVIKDQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQT WID+ + ++ VD +S +KAE+ ++LLRK+LGSLP+VP+ ++N ++ +T+W+ Sbjct: 121 RTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSLPIVPIQLKNQADVIMTDWLT 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ F L DEAEL S LE GG+IR K+QDL S+EI NH+ A K VTKLAL W I Sbjct: 181 EGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ ++ +LKR+KF D L++QNEDID++DFA RFDADF LMTGE+ LI ++ GGE Sbjct: 241 FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGE 299 >UniRef50_B3PBT6 Recombinaison associated protein n=2 Tax=Gammaproteobacteria RepID=B3PBT6_CELJU Length = 316 Score = 412 bits (1060), Expect = e-114, Method: Composition-based stats. Identities = 130/301 (43%), Positives = 197/301 (65%), Gaps = 1/301 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL+ + +L EE+ +LA F PCGS D + G+ PP+G H +N Sbjct: 15 MWFKNLRLYRLTDDWTLSPEELNDKLAPFCFNPCGSLDPLRYGFEPPLGREGTQYVHASN 74 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ICA+K+EKILPS VIK+ LE K+A + ++R + + E+D LKDE++ SLLPRAF+ Sbjct: 75 GYMMICAKKQEKILPSGVIKEQLEEKVAAIREAESRPVGRKERDGLKDEIIFSLLPRAFT 134 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +I LI+V+ +SAK+AED L+ LR++LGSL +P+S ++ +T+W+R Sbjct: 135 KSSLDYAYIALQEKLIVVNSSSAKRAEDLLSKLREALGSLRCMPISPKHLPTQVMTQWLR 194 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 A F L +E EL+ +DG V+R KK DLT+ EI +H+++G V+K+AL W++ I Sbjct: 195 DSEAPHQFALGEEVELQ-ATKDGRVVRCKKLDLTASEIRSHLDSGMHVSKIALCWKESIH 253 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 ++ D +KRLKF D + ++ D + E A++FDADF +MT EL I L+ GGEA Sbjct: 254 CILDDQLGVKRLKFEDVVSEKANDRNPETKAEQFDADFAIMTLELKNFITALLAAFGGEA 313 Query: 302 Q 302 + Sbjct: 314 E 314 >UniRef50_A3JCB9 Recombination-associated protein RdgC n=3 Tax=Marinobacter RepID=A3JCB9_9ALTE Length = 317 Score = 412 bits (1059), Expect = e-114, Method: Composition-based stats. Identities = 128/300 (42%), Positives = 197/300 (65%), Gaps = 1/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N V+R ++ + +E+E++L + F PCG Q+ + GWV P+G H + L H AN Sbjct: 1 MWFRNARVFRFTKPFDITTDELEEKLQADTFKPCGPQETTRQGWVAPLGKHGETLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +I R+E+KILPS VIK+ +E + +E +Q RK+++ EKD LK++V+ +LP+AFS Sbjct: 61 GYHLIALRREDKILPSSVIKELMEERAEAIEIDQGRKVRRKEKDELKEQVMLEMLPQAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + ++ ++ +G+++VD SAK+AE+ + LRKS+GSLPV P ++E T T W+ Sbjct: 121 KNRRSFAYLAPKDGVMVVDAGSAKQAEEIASALRKSIGSLPVRPPAVEQAPIFTFTGWLD 180 Query: 182 SG-SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +L DE ELK EDGGV+R K +L ++EI NH++AG VTKLA+ W + Sbjct: 181 ESIDLPAQIELGDECELKDPAEDGGVVRCKGMNLQADEIQNHLQAGMQVTKLAITWDDNV 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ ++ ++RLKF + L++Q E++D +D +FDA F LMT ELA LI L+E LGGE Sbjct: 241 SFVLDEELGIRRLKFGETLQEQLENVDADDALAKFDASFSLMTLELAKLIPGLLEALGGE 300 >UniRef50_Q21NJ1 Recombination-associated protein rdgC n=1 Tax=Saccharophagus degradans 2-40 RepID=RDGC_SACD2 Length = 305 Score = 409 bits (1051), Expect = e-113, Method: Composition-based stats. Identities = 119/298 (39%), Positives = 198/298 (66%), Gaps = 1/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL++ E++ LA F PCG D + GWVPP+G H H AN Sbjct: 1 MWFKNLRIYRLTQPFEHSPEQLHDLLAPFEFQPCGKLDPQRGGWVPPLGRHGSEFVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++ ++EEKILPS V+K LE K+A++ ++AR + + E+++LKDE++ +LLP+AF+ Sbjct: 61 GYIMVAFKQEEKILPSAVVKDHLEQKVAEISEQEARHVSRKERETLKDEIIFTLLPKAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + + +IDT L++V+ +SAK+AED +A LR+++GS P VPL+ P +T W+R Sbjct: 121 KSNICFAYIDTNEKLLVVNASSAKRAEDLMAALREAVGSFPCVPLNPTQPPPSVMTSWLR 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + + G +L +E EL + +DG +IR K QDLT++E+ +HI G VV K+A+ W++ +Q Sbjct: 181 DNTISAGLELGEECELTAP-KDGRIIRCKNQDLTADEVLSHINTGMVVNKIAVIWKEGVQ 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 ++ D + KRLKF + ++++ + + + A+ FD +F +MT EL+ +I++L++ GG Sbjct: 240 LIIDDQFAFKRLKFEEIIQEKAQSSNADSMAEEFDQEFAIMTVELSQMIKDLVKAFGG 297 >UniRef50_Q60AJ9 Recombination-associated protein RdgC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ9_METCA Length = 310 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 127/302 (42%), Positives = 194/302 (64%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL++YR + +L AE +E L + F PCGS ++A GW PP+ L H AN Sbjct: 1 MWFKNLVLYRFTEACTLTAERLEYALVARRFAPCGSMELAAAGWHPPLRRDDLPLVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++ KEEKILP+ V+ +ALE + ++EA + + + E+ L+DEV +SLLPRAFS Sbjct: 61 GYLMVSLLKEEKILPASVVNEALEERAEEIEARRGTPVGRKERRDLRDEVFNSLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +T ++D G ++VD AS KKAE+ ++LLR++LGSLPV P++ + +T W+ Sbjct: 121 HTRRTYAYVDPRGGWLVVDSASVKKAEELVSLLRQTLGSLPVAPVATQGRPPAVMTTWLL 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + DE EL+S E+GG++R ++QDL++ EI NHI+AGK V +LA+ W R+ Sbjct: 181 EQDLPPDLVIEDECELRSPEEEGGIVRCRRQDLSAPEIRNHIDAGKEVVRLAVSWNDRLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 F + D +K+L+F D +++Q +ID D +RFDADF +MT EL+ + L+E GGEA Sbjct: 241 FTLDDALGIKKLRFLDVIQEQAAEIDAADEVERFDADFAIMTLELSQFLARLVELFGGEA 300 Query: 302 QR 303 + Sbjct: 301 VQ 302 >UniRef50_C4ZKX6 Putative exonuclease RdgC n=1 Tax=Thauera sp. MZ1T RepID=C4ZKX6_THASP Length = 331 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 2/299 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYRL + AE +E+QLA F PCGSQDM GW+ P+G+ + L H Sbjct: 1 MWFKNLQVYRLPANWDMSAERLEEQLAKKPFHPCGSQDMESRGWLSPLGN--EVLVHAVG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 GQ ++C E ++LPS V+KQ + + +L +Q KL + + L+++V L+PRAF+ Sbjct: 59 GQWLVCLGFEHRLLPSAVVKQEADERAEELAEQQGYKLGRKQLKELREQVTQELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + WID +NG ++VD AS KAED L LR +L S P+ L E + +W+ Sbjct: 119 RRRRMFAWIDPINGWLVVDAASQSKAEDMLEQLRHTLDSFPLTLLRTERSPMSAMADWLA 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G A GF + + EL+S+ ED +R + L +++ H+EAGK+ T+LAL + RI Sbjct: 179 GGEAPDGFTIDQDCELRSVAEDKAAVRYARHPLEGDDVKGHLEAGKLPTRLALTFDDRIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ + +KRL F D +RDQ + D++D F+A+F LMTGELA L+ ++ LGGE Sbjct: 239 FVLTEKLEIKRLDFLDIVRDQVGEADKDDAEALFNAEFALMTGELAHLLPAVVAALGGE 297 >UniRef50_B0KTR8 Recombination-associated protein rdgC n=24 Tax=root RepID=RDGC_PSEPG Length = 306 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 140/300 (46%), Positives = 198/300 (66%), Gaps = 1/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSD-ALTHVA 60 +WFKNL+ YRL++E+ E +E LAS PC SQ++ G+V P G D L HV+ Sbjct: 1 MWFKNLLTYRLTQEVPFEPEALEAALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVS 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 ++I ARKEE+ILPS V+ A++ K+ ++E EQ RK+ K E+D +KDE++ + LPRAF Sbjct: 61 GEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 R S I G+I+V+ ASAK+AED L+ LR+ +GSLPV P +++ T+T+WV Sbjct: 121 IRRSMIFAAIAPRLGVILVNSASAKRAEDLLSTLREVMGSLPVRPATVKVAPVATMTDWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +S AA+GF +LDE EL+ EDGG++R K+QDLT EEI H+ GKVVT+LAL WQ ++ Sbjct: 181 KSQQAAEGFHVLDECELRDTAEDGGIVRCKRQDLTGEEIQLHLSTGKVVTQLALAWQDKL 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D +KRLKF + L++Q E ++ AQ+FDA F LM A + L E LGGE Sbjct: 241 SFILDDKMVIKRLKFEELLQEQAEQDGGDEAAQQFDASFQLMMMTFAEFLPVLFEALGGE 300 >UniRef50_C4K8J6 Recombination-associated protein rdgC n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=RDGC_HAMD5 Length = 302 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 164/297 (55%), Positives = 228/297 (76%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M+WFKNLM+Y+L + + E+EK+LA+ AF PCG Q+ ++GW+PPM SH D L++ Sbjct: 1 MIWFKNLMMYQLQCPLEKDSSELEKKLANFAFIPCGPQEKVRVGWIPPMVSHKDTLSYQV 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 N QI++CA KEEK+LP+ VIKQ LE++I KLEA+Q RKLKKTEK SLKD V + LLPRAF Sbjct: 61 NRQILLCAHKEEKMLPASVIKQELESQIEKLEAQQKRKLKKTEKASLKDHVFYDLLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 SRF +T +WIDT++ ++++D +S K+AE+ LALLR+SLGSL VVP + ++P+E LTEW+ Sbjct: 121 SRFQKTWIWIDTIHQMMILDASSTKRAEEALALLRQSLGSLAVVPFTFKHPVEFILTEWI 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 RS + GF L++EAELKS L +GG IR K Q+L S+EI HI++GK VT+LAL+WQ+ I Sbjct: 181 RSDNLPSGFVLMEEAELKSTLTEGGTIRCKNQNLYSDEIALHIKSGKKVTRLALEWQESI 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 Q ++ D SLKR+KF + LR++N I++++ AQ FDADF+LMT EL LI+N++ Sbjct: 241 QLILNQDLSLKRVKFLEVLREKNSHINKKEVAQCFDADFVLMTYELTELIKNMMSAF 297 >UniRef50_Q486R8 Recombination-associated protein rdgC n=1 Tax=Colwellia psychrerythraea 34H RepID=RDGC_COLP3 Length = 307 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 133/296 (44%), Positives = 189/296 (63%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL + +R +++EK L+ FTP GS +++ GW+ +G H D H AN Sbjct: 1 MWFKNLYFFAFTRPFEWSEQDLEKHLSEHLFTPLGSTEISHFGWINALGKHGDTSVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +ICARKEEK+LP+ VIK +E K+ LE EQ R K EK+ K+++ LLPRAFS Sbjct: 61 GNFLICARKEEKMLPASVIKDMIEEKVNLLEQEQGRGATKKEKEQFKEDITFELLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + T +I VN +I+++ +S KAED LALLRK LG+LPV L + + T+T+W+ Sbjct: 121 RITDTHAYISPVNNIIVINSSSRGKAEDLLALLRKVLGTLPVSSLEPDVCADETMTDWLN 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F L EAE +L +DG V+R K QDL SEEI +H++A K V K+AL+W + + Sbjct: 181 EKSLGGKFTLGMEAEFNALGDDGAVVRVKNQDLLSEEIKSHLDADKYVVKVALEWDESLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 F++CDD ++KR+KF D + +QN+DID +D + DADF LM+GEL I L+ Sbjct: 241 FILCDDLAIKRVKFFDVIHEQNDDIDSDDVIAKLDADFALMSGELNRFIIELLAEF 296 >UniRef50_Q2BMW7 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMW7_9GAMM Length = 304 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 133/303 (43%), Positives = 194/303 (64%), Gaps = 1/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN++ YRL+ E+++++L AFTPC SQ++++ GWV P + H + Sbjct: 1 MWFKNVIFYRLNEAFEYSQEQLQEKLKEQAFTPCKSQELSRYGWVSPCQQLDEMYAHQVH 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ ARKEEKILP VIK+A+ K+A++E EQARK+ K E+D LKDEV+ LLPRAFS Sbjct: 61 GMFMLAARKEEKILPGAVIKEAVGDKVARIENEQARKVYKKERDQLKDEVILDLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 +F QT I G I VD +S K+AE+ L+ LR +LGSLP+ ++ ++ W+ Sbjct: 121 KFQQTYALIAPAQGWIAVDASSHKRAEELLSHLRGTLGSLPIALPDVQQSPSAVMSNWLE 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + S QGF++ DE EL+ + +GGVIR K Q L EE H+EAGK V KLAL+W +++ Sbjct: 181 HNDSLPQGFEVQDECELRDNVLEGGVIRIKGQQLEDEEFIAHLEAGKRVVKLALEWDEQL 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 +F++ +D ++KRLK ++L+++ D ED +FD D + M E A L LI GGE Sbjct: 241 RFMLQEDLAIKRLKLSEQLQEKMADEAAEDEVAQFDVDMVQMGLEFAKLYPALIAAFGGE 300 Query: 301 AQR 303 AQR Sbjct: 301 AQR 303 >UniRef50_A4A8V5 Recombination-associated protein RdgC n=3 Tax=unclassified Gammaproteobacteria RepID=A4A8V5_9GAMM Length = 302 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 120/299 (40%), Positives = 182/299 (60%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL YR++R + AE++E +LA F PC +GWVP +G ++ L H A+ Sbjct: 1 MWFKNLRAYRMTRGLEFSAEQLEDKLAGRGFKPCTPAQPLSVGWVPALGEGAEMLVHAAD 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G++++C R+EEKILP V++ ++ ++ +EA+Q RK+ + EK SLKDEV +PRAFS Sbjct: 61 GRMMLCLRREEKILPPSVVRDLVKERVEAIEAQQGRKVYRKEKLSLKDEVTQDCMPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R ++ + ID ++VD ASA +AE+ L LLR+ +GS PV+ + +T W+ Sbjct: 121 RHAELRLIIDPQARWVLVDSASASRAEEALNLLRECVGSFPVLLPQTAHAPAAAMTSWLA 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + S + Q +E EL+ + E VIR K DL S+E+ H++ V +LAL WQ+++Q Sbjct: 181 NSSLPEDLQAREECELRDMGEQAAVIRCKGLDLYSDEVRQHLQGTTQVVRLALGWQEQLQ 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ DD L+R+KF D L +N+++ ED R DADF LM L + LI GGE Sbjct: 241 FVLGDDLCLRRIKFSDALVKENDELMDEDRLARLDADFALMAPTLTTIQDRLISLFGGE 299 >UniRef50_A7BMB4 Recombination associated protein RdgC n=2 Tax=Beggiatoa RepID=A7BMB4_9GAMM Length = 308 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 126/302 (41%), Positives = 194/302 (64%), Gaps = 3/302 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++R ++L A+++ +QL AF PCG DM MGWVPP+ S++L H N Sbjct: 1 MWFKNLHLFRFLHPVTLSADDLNEQLTESAFQPCGKMDMETMGWVPPLSRESESLVHAIN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I+ ARKEEKILP+ V+++ + K+ ++E +Q RK++K EKD +++EVLH L+PRAF+ Sbjct: 61 NCIIFTARKEEKILPASVVREFVNEKVEEIETQQMRKVRKREKDEIREEVLHDLIPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 R + +ID G +M+D S K+AE+ + LR+++GSLPVV ++ + +T+W+ Sbjct: 121 RSTYLSAYIDVTQGWLMIDTPSHKRAEELTSFLRQTVGSLPVVVPKLQQNLGNVMTQWLI 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +L D L +DG V+ K+QDL +EE+ H+ AGK V +LAL+W R+ Sbjct: 181 NQNHCPADLELADACVLTD--QDGAVVNCKRQDLLAEEMHGHLTAGKSVKRLALEWNDRL 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D+ ++RL+ D ++ Q D + E QRFDADF +MT ELAALI+ L+E GGE Sbjct: 239 AFILDDELVIRRLQLLDLVQAQLNDTESETSTQRFDADFSIMTLELAALIKRLLEIFGGE 298 Query: 301 AQ 302 + Sbjct: 299 DE 300 >UniRef50_Q478Z5 Recombination-associated protein rdgC n=3 Tax=Rhodocyclaceae RepID=RDGC_DECAR Length = 304 Score = 386 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 6/302 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL ++ + ++QL+ F C S GWV P AL + Sbjct: 1 MWFKNLQLYRLPTPWNIDLAKFDEQLSRGPFVKCPSNQPMSRGWVSP--RRDGALVYSLG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q +I E+++LPS V+ + ++ + +EA+Q + + L++ V L+PRAF+ Sbjct: 59 QQWMIALSVEQRLLPSSVVNEEVKERAELMEAQQGYAPGRKQLKELRERVTEELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R T +W+D NG VD S KAE+ + LR L P+ L + + + +W+ Sbjct: 119 RRRTTYVWLDPKNGWFCVDAGSPAKAEEVIEHLRHCLDDFPLTMLHTQVSPQAAMADWLA 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSE---EITNHIEAGKVVTKLALDWQQ 238 G A GF + + ELK+ E+ +R + L E EI H+ +GK+ TKLAL W Sbjct: 179 GGDAPAGFTIDRDCELKAAGEEKAAVRYVRHPLGDEISGEIKAHLASGKMPTKLALTWDD 238 Query: 239 RIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 RI FV+ + +KRL F D L+++ E E ++FDADF LMTGEL+ + L+E LG Sbjct: 239 RISFVLGEKMEIKRLAFLDLLKEEAEK-SAEHADEQFDADFALMTGELSRFLPQLVEALG 297 Query: 299 GE 300 GE Sbjct: 298 GE 299 >UniRef50_B5JTM5 Recombination associated protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTM5_9GAMM Length = 302 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 127/302 (42%), Positives = 190/302 (62%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 + F+NL +YR + E S E +E+QL++ AF C GWV P+G H + H AN Sbjct: 1 MLFRNLQLYRFTAEFSHSTEALERQLSAQAFQACAKNQTHSQGWVSPLGKHGEQRVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++C RKEE+++P+ V+++ALE K+ +E + R ++ EK +KDE+L +LPRAF+ Sbjct: 61 GYMMLCLRKEERLVPAAVLREALEEKVEAIELSEHRPVRGKEKARIKDELLLDMLPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R T +I +G ++VD +S +AE+ L+ LR+SLG LPV+PL + N T W++ Sbjct: 121 RSRYTYAYIAPSSGWLVVDSSSPARAEELLSALRESLGGLPVLPLQVRNAPHSVFTHWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G GF+L + EL + E GVI+ ++Q L +EEI HIEAGKVVTKLAL++Q R+ Sbjct: 181 QGHVEAGFELGERCELHGVQEQEGVIQIRRQSLDNEEIQVHIEAGKVVTKLALEFQNRLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 FV+ D S+K+L+F DE+ + E+ + FA FDA F MT EL AL L++ GGE Sbjct: 241 FVLDDALSVKQLRFSDEVLESLEEDSTDSFAAEFDARFARMTLELEALFPELLKAFGGEV 300 Query: 302 QR 303 + Sbjct: 301 EE 302 >UniRef50_A3QGL9 Recombination-associated protein rdgC n=2 Tax=Gammaproteobacteria RepID=RDGC_SHELP Length = 303 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 156/298 (52%), Positives = 207/298 (69%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYR ++ S+ E +EK L F+PC SQD++K G+ +G L H A Sbjct: 1 MWFKNLTVYRFNKPFSVDTEALEKSLEDFTFSPCSSQDISKFGFSKALGKLGHTLVHSAE 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +ICA KEEKILPS V+K+ALE K+A++EAE+ RKL K EKD+LK+E+ +LLPRAFS Sbjct: 61 NRHLICATKEEKILPSQVVKEALEEKVAQIEAEENRKLAKKEKDALKEEITTTLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQ I +I+VD +SA KAE+ LALLRK+LGSLPV+P+S + PIE LTEW++ Sbjct: 121 RRSQIHALILPEIEMILVDSSSATKAEELLALLRKALGSLPVIPMSFKTPIEAQLTEWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S SA F++ DEAELKS ++GG++R K+QDLT E+ H+E GK V KLAL + Q I Sbjct: 181 SNSAPAPFEMQDEAELKSDSDEGGIVRFKQQDLTENEVLAHLEVGKQVHKLALHFGQSIA 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D +KRLKF +E R N+++ ED R DADF LM EL AL+ +L+E LGG Sbjct: 241 FVLQSDAGIKRLKFSEEFRAHNDEVSTEDPLARLDADFALMGSELIALMNSLVEVLGG 298 >UniRef50_Q0F2D9 Recombination associated protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2D9_9PROT Length = 298 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 173/299 (57%), Gaps = 3/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N+ YR L E++ +QL+ PCG +MA GW P+G + L H Sbjct: 1 MWFRNIQFYRFEEPFKLTGEQLHEQLSKRQSRPCGQMEMASNGWSAPLGKNGTMLVHETA 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ C R+E+K+LP+ ++++ ++A+I ++E R + EK ++D+VL LLPRAF Sbjct: 61 GNLMFCLRREDKVLPASLVRELVDAQIFEIEQA-GRTPGRKEKGEIRDQVLAELLPRAFV 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 R S T I +G ++++ +SA+KA++ + L K+L +LPVV S E E +T W+ Sbjct: 120 RASHTFACILPASGWLVINASSARKADEVIEALNKTLTTLPVVMPSTEQSPEAAMTGWLM 179 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 R+GS + F +E EL V+R + D+ S+E+ H+ G TKLAL+W++RI Sbjct: 180 RAGSLPEDFTFGEECELHDAA-SSAVVRCRNVDVMSDEVRAHVTEGLTATKLALNWRERI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ +D S+KR+KF + D+ D +D RFDADF +M E + I L+ + G Sbjct: 239 SFVLSEDLSVKRMKFDTAIVDEAGDQGGDDEVARFDADFAMMAAEFSEFIPQLLTAVDG 297 >UniRef50_A1WYS1 Recombination-associated protein rdgC n=4 Tax=Ectothiorhodospiraceae RepID=RDGC_HALHL Length = 302 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 123/299 (41%), Positives = 192/299 (64%), Gaps = 1/299 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL+ YRL +++ E +++LA++AFTPCG+ + ++ G+VPP+G L H A Sbjct: 1 MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGP-GAPLVHAAA 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ C ++E K+LP+ VI++A++ +I +EA + RK++K E+D ++DEV+ L+PRAFS Sbjct: 60 GSLLFCLQEETKLLPAAVIREAMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +T ++DT G ++VD S K+AE + LR++ G L + P E +T W+ Sbjct: 120 RHKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLTLSPPETEMGPGTIMTRWLA 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +L +EA L+ +G +R K+QDLTSEE+ HI+AGK V +LA+ + +R+ Sbjct: 180 QQQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLS 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 V+ D SL+RLKF D +R+Q D D E A++ DADF LMT EL LI L+E GGE Sbjct: 240 AVIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGE 298 >UniRef50_A4Y4Y9 Recombination-associated protein rdgC n=26 Tax=Gammaproteobacteria RepID=RDGC_SHEPC Length = 304 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 150/298 (50%), Positives = 204/298 (68%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YR ++ + E +E LA F+PC SQD++K G+ +G +L H AN Sbjct: 1 MWFKNLTLYRFNKPFVVETEALETALADFTFSPCSSQDISKFGFSNALGKKGSSLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +IC KEEK+LP VIK+ALE K+A +E E+ RKL K EKD+LKDE++ SLLPRAFS Sbjct: 61 NRHLICVTKEEKMLPGQVIKEALEEKVALIEDEENRKLAKKEKDALKDEIITSLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQT I +I+VD +SA KAE+ LALLRK+LGSLPV+PLS + P+E LTEW++ Sbjct: 121 RRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPVESHLTEWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +GSA F++ DEAELKS ++GG++R K+QDL +E+ H+ GK V KLAL + Q I Sbjct: 181 NGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 ++ D S+KRLKF +E R N+++ +D R DADF LM EL AL+ L+ LGG Sbjct: 241 LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVSALGG 298 >UniRef50_Q2SCW6 DNA recombination-dependent growth factor C n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCW6_HAHCH Length = 307 Score = 375 bits (964), Expect = e-103, Method: Composition-based stats. Identities = 112/299 (37%), Positives = 185/299 (61%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 + FKN ++YR ++ + E++E L+ AFTPC + D ++GWVP SDAL + Sbjct: 1 MLFKNALIYRFTKPVPWPLEDLETGLSEHAFTPCQANDTYRLGWVPAAPLVSDALVYQQG 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 +++ ++EEKILP+ VIK+ +E + ++E + RKL+K EK+ LK++V+ LLP+AF Sbjct: 61 RYLLLTLKREEKILPASVIKEEVEERAQEIEEREQRKLRKKEKNELKEQVITVLLPQAFK 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +ID GL++VD +S +A++ + LR+S+G+LP+ +++ + ++WV+ Sbjct: 121 RSRLMSAYIDLDKGLLVVDTSSGTRADEFTSFLRQSMGTLPIRFVALNEAPAVHFSDWVQ 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F D EL+S VIR K + ++ I+ HIE G VT+L+L+W +++ Sbjct: 181 KDSTPTPFVSGDNCELRSGDGSDTVIRCKGTESLTDAISTHIENGMQVTQLSLEWDEKLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F + DD +KR+KF D L++Q +D D + A+RF ADF LMT E + + +LI+ LGGE Sbjct: 241 FAVGDDLKIKRIKFMDTLQEQLKDGDTGEAAERFAADFSLMTLEFSRMTDDLIKVLGGE 299 >UniRef50_A5UGC4 Recombination-associated protein rdgC n=48 Tax=Gammaproteobacteria RepID=RDGC_HAEIG Length = 302 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 209/303 (68%), Gaps = 3/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNLM YRL++ + +++ QL F PCG+QD +K GW P+ SD L Sbjct: 1 MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPL-RGSDLLYFSVG 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 QI++ A+KEEKILP+ V+K+ L+ +I LE ++ RKLKK EK +LKD+V+ +LLPRAFS Sbjct: 60 KQILLIAKKEEKILPANVVKRELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + T +WIDT N LI +D AS+K+AED LALLRKSLGSLPVVPL+ N LT W+ Sbjct: 120 KNQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLPVVPLAFANEPSTILTNWIL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAG-KVVTKLALDWQQRI 240 + L+EAEL+ ED VIR KKQ L +EEI ++ G KVV+KLAL+W+ + Sbjct: 180 QDNLPHWLLALEEAELRGSQED-SVIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTL 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV +D ++KRLKF D +R++N+DI +EDFAQRFDADF+LMTG LA L +NL++ GGE Sbjct: 239 TFVFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGE 298 Query: 301 AQR 303 R Sbjct: 299 KAR 301 >UniRef50_C5S756 Putative exonuclease RdgC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S756_CHRVI Length = 315 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 120/295 (40%), Positives = 186/295 (63%), Gaps = 1/295 (0%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKN +RL + A E+E+ L F PCG + A +GW P+G + AL +G Sbjct: 2 FKNARFFRLDQPFEFTAAELEEALGGRRFRPCGPIETATLGWTSPLGEETTALVQAVSGC 61 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 +ICAR++E++LPS + +AL+ ++++LEA +AR + + E+ L++++++ +LPRAF+R Sbjct: 62 YLICARRQERLLPSAAVAEALDERVSELEAGEARDVGRAERRRLREQIINEMLPRAFTRS 121 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 +T +++DT +G ++VD +S K+AE+ ++LLR++LGSLPV P LT W+ Sbjct: 122 RRTQLYLDTESGWLVVDSSSEKQAEEVVSLLRETLGSLPVRLPDPVRPAANVLTSWLLDE 181 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 SA F D EL+ + E GV+R +QDL SEEI NH+ AGK VTKLAL+W +R+ F Sbjct: 182 SAPNDFVPGDACELRDVGEQAGVVRCSRQDLASEEILNHLRAGKQVTKLALEWDERLSFT 241 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 + DD SLKRL+ + L ++ D D D AQR DA+F ++ ++ LI L E G Sbjct: 242 LADDLSLKRLRVGEALLEEL-DGDDMDPAQRLDAEFAILALQVRQLIARLDEVFG 295 >UniRef50_A0Z347 Recombination associated protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z347_9GAMM Length = 327 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 117/298 (39%), Positives = 177/298 (59%), Gaps = 1/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL YRL + L AE M ++L S FTPC GWV + + D+L H A Sbjct: 28 MWFRNLRAYRLPERLGLDAEAMAQRLESRPFTPCRPAQPLSAGWVAALDDNVDSLVHAAG 87 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++ ++EEK+LPS VI+ + +++ +++ +ARK+ + E+ L DEV L+PRAF+ Sbjct: 88 PYWLLRLKREEKLLPSSVIRDEVGSRVLQIQTAEARKVHRKERLQLTDEVTQDLMPRAFT 147 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + +G + V+ ASA +AED L+ LR++LGSLP V ++EW+ Sbjct: 148 RARSIEAMVFEKDGWLWVNNASAPRAEDFLSALREALGSLPAVLPVTRKNPAAVMSEWLL 207 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +GF+L EA+L E+GGV+RA+ L +EI HIE+GK V +LAL WQ R++ Sbjct: 208 HDQLPEGFELGTEADLVEPGEEGGVVRARSMLLDCDEIRAHIESGKQVQRLALAWQGRLE 267 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D ++RLKF + L ++DI+ ED R DADF+LM+ LA L L++ GG Sbjct: 268 FVLGADLVIRRLKFAEALTTAHDDIN-EDPLARRDADFLLMSETLAELWPALLQAFGG 324 >UniRef50_C9YCI4 Recombination-associated protein rdgC n=5 Tax=Comamonadaceae RepID=C9YCI4_9BURK Length = 309 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 158/297 (53%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKN++VYRL S+ ++E L + F CG+ +GW P G L V GQ Sbjct: 2 FKNVIVYRLVSPWSVTQAQLEDALQADRFVECGASQEKSVGWTEPRGQAHGPLVEVVGGQ 61 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 V+ E K +P V+K+ +E ++A++E RK K E L+D+ +LLP AF++ Sbjct: 62 WVLKLMMEVKSVPGSVVKRKVEEQVAQIEVSTGRKPGKKEVRELRDDARLALLPMAFTKQ 121 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 +WID +G +++D S KA++ + L K++ V ++ + + W+ + Sbjct: 122 GSVGVWIDPKSGWLVLDAGSQGKADEVMTALIKAIPDFAVQLVNTQISPAAAMAVWLSTR 181 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 + F + E ELK+ E V+R + L +EE++ HI GK+ T+LA+ W R+ FV Sbjct: 182 ESPTDFSVDRECELKASDESKAVVRYTRHPLDTEEVSQHIALGKMPTRLAMTWNDRVSFV 241 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 + + LK++ F D + ++ + FDAD I+ TGEL+ LI +L+E LGGE Sbjct: 242 LTEALQLKKVTFLDTVFEEASKAAGDGKDDNFDADVIISTGELSQLIPDLMEALGGE 298 >UniRef50_Q8H9Q5 ORF10 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q5_9CAUD Length = 309 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 124/300 (41%), Positives = 194/300 (64%), Gaps = 2/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN + YR + L E++EK L F GSQ ++ GW +G ++ +HVAN Sbjct: 1 MWFKNAIFYRFDKAKELDFEQLEKALQEYQFKEAGSQQVSSFGWSKVLGESAELFSHVAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ICA+++EKILP+ VI++A +A+I ++ + +ARK+ K E++ LKD+V+ LLP+AFS Sbjct: 61 GCVMICAQRQEKILPADVIRRAHKARIDEVISREARKVGKKEREHLKDQVIQELLPKAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R+S++ +IDT GL +VD ++ KKAED ALLRKSLGSLP+VP +N +T W+R Sbjct: 121 RYSKSFAYIDTKRGLFVVDASAFKKAEDLGALLRKSLGSLPIVPTHTKNMPTDVMTNWLR 180 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 S G L D EL+ ++DGG++R +Q++T +E+T H+ GKV T++A++W+ ++ Sbjct: 181 SLDKLPAGIVLGDAVELRDPVQDGGIVRLTRQEITEDEVTTHLNVGKVATRIAINWEDQV 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDI-DREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 V+ +D L +KF D L ++ D D E A +FDADF++M +A L + GG Sbjct: 241 NMVLHEDVRLTGIKFDDRLVERAMDQGDGESAAAQFDADFVIMAETMAQLYVRITGLFGG 300 >UniRef50_Q15X11 Recombination-associated protein rdgC n=4 Tax=Alteromonadales RepID=RDGC_PSEA6 Length = 301 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 123/296 (41%), Positives = 193/296 (65%), Gaps = 2/296 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +Y L++ + L E+++ +LA F PCGSQ++A MGW P+G D L H A Sbjct: 1 MWFKNLKLYHLTQTLDLTEEDIQDKLAEFPFRPCGSQELATMGWTSPVG-QGDMLVHSAG 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G+ + +K+E+ILP+ V+ L K+A +EAE + K + +K+E++ LLP+AF+ Sbjct: 60 GKFWLTLKKQERILPAAVVNAELADKVALMEAETGSNVGKKAQQEMKEEIIQRLLPQAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S + +I T + L++VD ++ KAE LA+LRK++GSLPVVPL+ + ++ LT W+ Sbjct: 120 KNSFSHGFISTQDNLVVVDASADGKAETFLAMLRKAIGSLPVVPLA-KQSVQEELTHWLT 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S +L+EAEL+S+ EDG ++R K QDL SEEI NH+ AGK V K+A++W + Sbjct: 179 DDSVPNDVVILEEAELRSMEEDGAIVRCKNQDLGSEEIANHLSAGKTVQKIAIEWDETFS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 ++ +D ++KRLKF D + +QN+DI +ED + DADF LM+ E+ + L+E Sbjct: 239 ALLQEDMAVKRLKFTDVMTEQNDDIPKEDKLAKMDADFALMSAEIVRFSKRLVEIF 294 >UniRef50_A4JTE0 Putative exonuclease, RdgC n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTE0_BURVG Length = 301 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 155/299 (51%), Gaps = 3/299 (1%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 F NL +YRL+RE + AE +E+ + F PCGSQD GWV P L H Q Sbjct: 2 FSNLHIYRLTREWDMTAERLEELVGKRPFQPCGSQDQKSAGWVSP--QEHGPLVHALGRQ 59 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 ++ R E K +P IK+A+ K E K + +K+E L LLPRAF + Sbjct: 60 WLLALRIETKSVPGEAIKKAVAEKSKDYEQRNGYKPGRKVVKDMKEEALMELLPRAFPKQ 119 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 + +WI+ +G I ++ ++ KA+D +A L ++ + P+ + + +W+ SG Sbjct: 120 ATIQVWINAESGWIAMNTSTPSKADDVVAALIETSSTAPISLVRTNQSPAQAMADWLTSG 179 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 A F + + ELK ++ ++ + L +EI HIE GK TKLA+ W R F+ Sbjct: 180 EAPDNFTVDRDCELKGTEDEKPTVKYSRLSLERDEIRQHIEEGKRPTKLAMTWDDRASFI 239 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 + D G +K+L F D + ++ +D ED F + F +MT EL+ +L+E LGGEA+ Sbjct: 240 LTDKGQVKKLVFLDAVMEEIN-LDAEDADAVFHSTFAIMTAELSRFFPDLVESLGGEAE 297 >UniRef50_Q8L2C7 DNA recombination protein n=2 Tax=Enterobacteriaceae RepID=Q8L2C7_PROVU Length = 333 Score = 359 bits (922), Expect = 8e-98, Method: Composition-based stats. Identities = 151/298 (50%), Positives = 207/298 (69%), Gaps = 2/298 (0%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 K+++VYR++R+I + +QL + F PCG QDMA+ GWV P+G + LTH ANG I Sbjct: 7 KSVVVYRITRQIDFS--NIAEQLKTFVFQPCGPQDMARTGWVSPLGEEYEELTHQANGLI 64 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFS 124 ++ R E KI+P +K+ + ++ KLE EQ R+LK+TE +L D VL LLP+A S+++ Sbjct: 65 LLTQRNESKIIPPATVKELVRQRVTKLEKEQHRRLKRTEISALNDLVLGELLPKALSKYA 124 Query: 125 QTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGS 184 MWID + LI+VD S K+AED ALLRK+LGSLP++P ++E P+EL LTEWVRS Sbjct: 125 NMNMWIDPKSRLIIVDTTSFKRAEDAAALLRKTLGSLPIIPFTLETPVELKLTEWVRSSE 184 Query: 185 AAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVM 244 G L DEA L+++LEDGGV+ K+QDL +EI NHIEAGK+VTKL++ W +++ FV+ Sbjct: 185 LPPGLALCDEATLEAILEDGGVVTTKRQDLVCDEIANHIEAGKLVTKLSMSWMEQLNFVI 244 Query: 245 CDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 D + RL F D L +QN+DIDRED QRFDADF+L TG + L+ LI GGEA+ Sbjct: 245 NDSFVISRLNFADALIEQNDDIDREDEVQRFDADFVLFTGVIMELLDQLIAAFGGEAK 302 >UniRef50_Q3II43 Recombination-associated protein rdgC n=3 Tax=Alteromonadales RepID=RDGC_PSEHT Length = 303 Score = 356 bits (913), Expect = 8e-97, Method: Composition-based stats. Identities = 129/297 (43%), Positives = 200/297 (67%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF NL+ YR +++S E+ +K L F PC Q++A GW G H + L+H + Sbjct: 1 MWFSNLICYRFKQDVSYTQEDFDKALEQDLFRPCTGQELATFGWTKAFGKHGETLSHFSQ 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I++CA++EEK+LP+ VI + + K+ +EAE+ R +KK EKD LK+ +LH+LLP+AF Sbjct: 61 KSILVCAKREEKVLPASVINELVAEKVDLIEAEENRPVKKKEKDELKENILHTLLPQAFK 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +ID NG ++V+ S KAE+ LALLRKSLG+LPVVP +++ LT+W+ Sbjct: 121 KSSLQFAFIDQENGWVVVNSGSFNKAEELLALLRKSLGTLPVVPAFANYDLDVFLTDWLT 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + S +GF + +AEL+ + G ++ K DL+ +E+ +H+E GK VTKLALDWQ+R++ Sbjct: 181 NFSTPEGFAIGSDAELEEADDSGAQVKLKGHDLSCDEVKSHLETGKRVTKLALDWQERVK 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 F++ +DGS+KRL + D L+++N DI +ED A + DADFIL + E+ L++ L +GLG Sbjct: 241 FMLQNDGSIKRLSYSDTLKEENADIPKEDMAVKLDADFILASEEIKQLLEELTQGLG 297 >UniRef50_B1K4Q5 Recombination-associated protein rdgC n=44 Tax=Betaproteobacteria RepID=RDGC_BURCC Length = 307 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 177/298 (59%), Gaps = 3/298 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++RL ++ ++MEK LA AF P S +M ++GW P AL + N Sbjct: 1 MWFKNLQLHRLPAPWAVTPDQMEKWLAPHAFQPGSSVEMQRVGWASP--RDDGALVYSNN 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q+++ R E+K+LP+ V+ Q +A+ ++E +Q K+ + + LK++V LLPRAFS Sbjct: 59 RQMLLLFRAEKKLLPASVVNQVTKARALEVEEQQGFKVGRKQLRELKEQVTDELLPRAFS 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 T +WIDT NG +++D A+ A+D +LL KS+ LP+ + + +T+W+ Sbjct: 119 IRRDTRVWIDTANGWLVIDAAAQALADDVRSLLVKSIDQLPLAGVHVARSPVAAMTDWLL 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 SG A GF + +AEL+S E G +R L + ++ HIEAGK +LA+ W RI Sbjct: 179 SGEAPGGFTVDQDAELRSSGEGGATVRYVGHALEANDMRRHIEAGKQCMRLAMTWNDRIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ ++KR+ D +++ + + D +RFD+DF LMTGELA ++ +L++ LGG Sbjct: 239 FVLTPSLTIKRVTPLDVIKEAADPTAQND-DERFDSDFTLMTGELARMLASLVDILGG 295 >UniRef50_A3EHV2 Recombination-associated protein RdgC n=2 Tax=Vibrio cholerae RepID=A3EHV2_VIBCH Length = 369 Score = 353 bits (906), Expect = 5e-96, Method: Composition-based stats. Identities = 137/302 (45%), Positives = 206/302 (68%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++ KNL++YR++R+I E+ME L T GSQD K GWVP + + S AL H ++ Sbjct: 1 MFPKNLLIYRVNRDIQFDPEKMETLLGEFKLTQLGSQDKQKFGWVPALYNKSSALVHSSS 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I+I A+K EK++P+ +I + ++ K+ +LE E+ R LKK +++ ++++++ +LP A Sbjct: 61 GNILIRAQKSEKLIPASIISKMVKEKVEQLEREEGRPLKKKDREQIREDIIIDILPTALI 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S T ++I GLI+VD +S KKAED+LALLRK+LGSLPVVPL +E TLTEWV+ Sbjct: 121 KESFTSLFILPSQGLIIVDASSYKKAEDSLALLRKTLGSLPVVPLIPAVAVETTLTEWVK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + GF + + A ++S+LE G + K ++L++E I HIE KVVT L++DWQ RI+ Sbjct: 181 TAQVPSGFSIGNSAVMQSILEKGAQVTLKNEELSAESIQKHIEENKVVTALSIDWQDRIK 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 F + D ++ R+KF DEL++QN+DI RED A R DADF L+ GEL A +LI+ LGG + Sbjct: 241 FTLKDTMAITRVKFADELKEQNDDIPREDLAARLDADFTLIAGELTAFCSHLIDALGGVS 300 Query: 302 QR 303 Q+ Sbjct: 301 QQ 302 >UniRef50_A3WJE4 DNA recombination-dependent growth factor C n=2 Tax=Idiomarina RepID=A3WJE4_9GAMM Length = 297 Score = 352 bits (905), Expect = 6e-96, Method: Composition-based stats. Identities = 129/294 (43%), Positives = 182/294 (61%), Gaps = 1/294 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN VYR S L E+ E QL + AF PCG QDM GW G+ SD L H Sbjct: 1 MWFKNARVYRFSDTFQL-PEDFESQLEAQAFKPCGRQDMTSFGWTSVFGAQSDVLHHAVE 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++CA++EEK+LP+ VI LE K+ ++ + R + EK ++K+++ H LLP+AFS Sbjct: 60 QSYLVCAQREEKVLPAAVINAELEQKVQAIQDTEGRPVNGKEKKNIKEDITHQLLPQAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +F +T +ID L++VD +SA KAED L LLR SLGSLPV P+++ E+ LTEW+ Sbjct: 120 KFRRTWAYIDLKRQLVIVDESSANKAEDLLGLLRASLGSLPVKPIALAESAEVVLTEWLT 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F L DE EL+S DGG+IR K++DLT E++ H AGK V KL L W +RI+ Sbjct: 180 KQSLPSRFDLGDELELRSPQADGGIIRCKQEDLTREDVQAHATAGKQVVKLGLVWNERIE 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIE 295 V+ D +LKR+K D+L D +D + Q+ D+D L++ EL AL+ +L+ Sbjct: 240 CVLEADWALKRIKATDQLLDDQDDWNDASPEQKLDSDLALVSAELGALLDDLLS 293 >UniRef50_C6MGX0 Putative exonuclease RdgC n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MGX0_9PROT Length = 295 Score = 351 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL VYR++ ++ +E+ L++ A PC +M GW+ P S + Sbjct: 1 MWFRNLQVYRITS-GNITLNSLEEALSNHALQPCLQMEMQSRGWMTPR-EESQNFVYAYG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q +I E+K+LP+ VI Q + +AK+E Q K K + +K+ + L+PRAF+ Sbjct: 59 QQWLIALGVEKKLLPAGVINQQAKDHLAKMEQMQGYKPGKKQIRDIKEATIIELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + +T WID V +++D AS +KA++ + +L KS+ L + PL + +T W+ Sbjct: 119 QRHKTYAWIDAVKNRLIIDTASTQKADELVEVLVKSMHGLTLAPLETQTSPSSAMTRWLS 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 F + + EL+ + ++ ++ L +EE HI AGK V KLA+ W +I Sbjct: 179 GTDLPSIFSIDRDCELQGMNDEKATVKYTHHVLEAEETARHIRAGKKVIKLAMTWDSKIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ D+ L+R+ D +++ ED + F +DF +MTGEL+ LI +++ LG E Sbjct: 239 FVLHDNLQLRRIVPQDIVKES-----TEDAEELFVSDFAIMTGELSQLITEMVDALGSE 292 >UniRef50_A6GUC5 Recombination associated protein n=5 Tax=Betaproteobacteria RepID=A6GUC5_9BURK Length = 327 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 157/299 (52%), Gaps = 5/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++RL++ E +E +LA A CG D+ GWV P + + H + Sbjct: 29 MWFKNLFIFRLTK-WEETPESLEDKLAKQALQACGGMDLQTRGWVSP-KAEGEPFVHRSG 86 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q++I E+K+LPS VI Q +A+ ++E + K + + +K+ V LLPRAF+ Sbjct: 87 QQLLISLGLEKKLLPSTVINQFTKARATEIEEREGYKPGRKQMKEIKEAVTDELLPRAFA 146 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 S+ WID +++D AS KA++ + +L KS+ + + + + + +T W+ Sbjct: 147 IRSRINAWIDLEGKWLVIDAASPAKADELIGMLMKSVEGVAMALVKTKISPTVAMTAWLA 206 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 F + + ELKS E +R K L SEEI HI+ GK VTKLA+ W ++ Sbjct: 207 ENDNPPPFTVDQDCELKSRGEQAATVRYVKHSLESEEIAKHIKGGKDVTKLAMTWADKVS 266 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ ++ +KR+ D +++Q +D F LMTGEL LI LI LGGE Sbjct: 267 FVLHENLQVKRVAPLDVIKEQAALSADDDAFDSD---FALMTGELRKLIPGLINVLGGE 322 >UniRef50_A2SN77 DNA recombination-dependent growth factor n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SN77_METPP Length = 332 Score = 346 bits (888), Expect = 5e-94, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 154/299 (51%), Gaps = 4/299 (1%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKNL VYR+ + E E L F CG+ GWV P G L Q Sbjct: 14 FKNLSVYRIQGDWHPAIAEAEASLQKFRFAECGATQAISAGWVEPRGEKHGPLVEAVGDQ 73 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 ++ + K+LP+ VIKQ ++A+I +++ +AR+ K E +K+ V+ LLP+AFS+ Sbjct: 74 WMLTLCIQTKLLPAGVIKQHVDARIEQIKQREARRPGKKEVREIKEAVILELLPKAFSKK 133 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 +WID N L+ +D AS K + + L K+L L + + + +++W+ G Sbjct: 134 EHISVWIDRKNKLVAIDTASQSKCDTATSALVKTLDGLAIGLIQTQMSPGTCMSQWLMDG 193 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 A GF + E ELKS E ++ + L +E+ H+ GK T+LA+ W R+ F Sbjct: 194 EAPDGFGVERECELKSSDESRSAVKYSRHVLDIDEVKQHLTHGKTPTQLAMTWTDRVSFT 253 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 + D +LK++ F + + + +D FDA+ ++TGEL+ LI LIE LGGE + Sbjct: 254 LTDAMALKKVTFLETPLMK-KKAGGDDP---FDANAAIVTGELSQLIPQLIEALGGELE 308 >UniRef50_C0DWI1 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DWI1_EIKCO Length = 299 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 2/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK + Y L+++ E + +L F P D G+ PP G + L A+ Sbjct: 1 MWFKQVSFYPLNKDKLPDLETLSAKLQEAEFAPPQGLDWFGEGFAPPEGFLPE-LVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +K EK+LP+ VI++ L+ KIA+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTWSVALKKSEKVLPAGVIREILDDKIAEIQEAEARTVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S+T DT +G ++V+ ASA +AE+ LA LR++LG L + + +TEW+ Sbjct: 120 RSSKTQAVCDTRSGFLLVNQASATRAENLLAKLREALGGLEAKLPNTKQSPSSLMTEWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ GF+L D ELK + +R KQDLT++E+ H++ GK VT+L L W+ +I Sbjct: 180 QGACGGGFELDDMCELKGTGDAAPTVRVSKQDLTADEVVQHVKTGKTVTQLGLVWRDQIA 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D +LKR+++ D L+++ E +D A A ILM L+ L+Q L+ LGG Sbjct: 240 FVLTQDFTLKRIQYLDVLQEEAE-SHGDDAASLAFASQILMAEALSTLLQELVSLLGG 296 >UniRef50_O87408 Recombination-associated protein rdgC n=29 Tax=Neisseriaceae RepID=RDGC_NEIG1 Length = 299 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 175/298 (58%), Gaps = 2/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK + Y L++E A+ + +LA FT C D G+ P+ S S L A+ Sbjct: 1 MWFKQISFYPLNKEKLPEADVLADKLAEAEFTHCQGLDWFSEGFTAPV-SFSPELVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + + +KEEK+LP+ VI+ LE K+A+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTLRVALKKEEKVLPAGVIRDILEEKVAEIQNNEARNVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S+T +T +G ++V+ A++ KAE+ L LR++LG L + + +T W+ Sbjct: 120 RSSRTEAVFNTRHGYLLVNNAASAKAENILTKLREALGGLEASLPNTKQSPSSLMTGWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G GF+L + ELK + V++ KQDLT++E+ H++ GK VT+L L W+++I Sbjct: 180 QGHCEGGFELDSDCELKGTGDIVPVVKVSKQDLTADEVVQHVKNGKTVTRLGLVWREQIA 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 F++ D +LKR+++ D L+++ E + +D A A ILM ++ +++ L+ LGG Sbjct: 240 FILTQDFTLKRIQYLDVLQEEAE-SNGDDAAGLAFASQILMAESVSTMLEELVSYLGG 296 >UniRef50_A3Y751 Recombination-associated protein RdgC n=2 Tax=Marinomonas RepID=A3Y751_9GAMM Length = 300 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 161/291 (55%), Gaps = 1/291 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN+ ++L+ ++ E+ +LA CGSQ+ GW+ P+ +S+ +N Sbjct: 1 MWFKNVQFFQLTDTDAIDTNELIDKLADFPLKECGSQEEYSFGWM-PLIRNSEQWYLASN 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++I A KEEK+LPS V+++ LE KI+++E + RK+ + EK +KDE++ +L P+AFS Sbjct: 60 KCVLIRAGKEEKVLPSSVVREELEIKISEIELIEGRKVGRKEKADIKDELVFTLRPKAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S ++D L++++ +A E L+ +LGS P+ PL + ++ W+ Sbjct: 120 KRSDIWAYLDMEAKLLVINSTNASMTELLFKQLQTTLGSFPMAPLMPQESPSGLMSNWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +E E++ E+ IR K + SE++T HIE G V LAL W +++ Sbjct: 180 KNELPASLNTGEECEIQDGSEEKASIRFKALEPLSEDVTRHIEQGMRVKSLALKWTEKLN 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQN 292 FV+ +D SL+++KF D ++++ + + DA+F LM+ EL + Sbjct: 240 FVLHEDLSLRKIKFDDTIKEKAFNDSQGGGLSDLDANFALMSLELREFYDS 290 >UniRef50_B2I7H2 Recombination-associated protein rdgC n=24 Tax=Xanthomonadaceae RepID=RDGC_XYLF2 Length = 302 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 3/290 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++F+NL ++R SL +++ L + P G +M G++ P G + + Sbjct: 1 MFFRNLTLFRF--PTSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQ 58 Query: 62 GQIV-ICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 G + + E+KILP+ V+ L K +++E ++ E+ +KD+++H LLPRAF Sbjct: 59 GDFLWLTVGSEDKILPASVVNDLLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAF 118 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + S+ +D G + VD AS K AE ++ +R LGS P +PL+ E I LT W+ Sbjct: 119 VKNSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFPALPLNAEISIRSMLTSWI 178 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + L DE E+K E G +I+ + Q L EEI H+E GK V+KLAL + Sbjct: 179 AGEPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHV 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALI 290 FV+ DD +++LKF D + DQ E D + DA F LM+ E+ L Sbjct: 239 SFVLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLF 288 >UniRef50_B5AX95 Putative exonuclease RdgC n=1 Tax=Iodobacteriophage phiPLPE RepID=B5AX95_9CAUD Length = 300 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 2/300 (0%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M FK++ ++RL + L +E L + TPCG DM G+VPP D + + Sbjct: 1 MKPFKSINLFRLPADHGLSLTCIEADLFTKPSTPCGPGDMETRGFVPPAPHMPDQIVYFN 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 ++I + E KI+PS V+KQ +IA +E E+ RK+ + E +++ +L AF Sbjct: 61 QQAVLIHLQTETKIIPSAVVKQEAAKRIASIEKEEGRKVGRKEAKDIQETCRDTLKLTAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 ++ + ID GL+M++ +S KAED L+ LR++LG L + + +T WV Sbjct: 121 TKITTQRAIIDLKMGLVMIEASSTGKAEDMLSALREALGGLNTKLVQINRRPSSAMTFWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 G + F L D E+KS E G + +QDL + E+ H+ GKVVTKLAL+W+ +I Sbjct: 181 FDGPEDE-FLLGDFCEMKS-EESGATAKCSRQDLDAVEVEEHLRTGKVVTKLALEWKDKI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F + ++ +KR+KF D L+DQ + D + F++ L GE+ +I +LI+ LGGE Sbjct: 239 SFQLTENLEIKRVKFMDILQDQLKGADVDTQDAMFESSATLFIGEIRLMIADLIDALGGE 298 >UniRef50_C4GKZ6 Putative uncharacterized protein n=2 Tax=Neisseriaceae RepID=C4GKZ6_9NEIS Length = 301 Score = 326 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 169/298 (56%), Gaps = 2/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK L Y ++ E + + +L+ F P D G+ P S S L A+ Sbjct: 1 MWFKQLNFYPINLETLPDLDTLTAKLSEAEFAPITGLDWFSEGFTAPQ-SFSPELVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I +K EK+LP+ VI++ L+ K+A+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTWSIALKKAEKVLPASVIREILDDKVAEIQTAEARSVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S+T DT +G ++++ A+A KAE+ L+ LR++LG L + +TEW+ Sbjct: 120 RSSRTQAICDTKHGYLLINNANANKAENLLSKLREALGGLEARLPQTQQSPSSLMTEWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ GF+L D E+K + VI+ KQDLT+ E+ H++ GK VT+L L W+++I Sbjct: 180 QGACQGGFELDDNCEIKGSGDVVPVIKIAKQDLTAPEVVQHLKDGKTVTQLGLVWREQIA 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ + +LKR+++ D L+++ E +D A A ILM + +I L++ LGG Sbjct: 240 FVLDANFALKRIQYLDVLQEEAEQ-HGDDAASLAFASQILMAESIGNMISELVDYLGG 296 >UniRef50_Q0VLT7 Recombination associated protein rdgC n=2 Tax=Alcanivorax RepID=Q0VLT7_ALCBS Length = 301 Score = 324 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 156/297 (52%), Gaps = 2/297 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +W KNL V+ E+++ L PCGSQ G+VPP+ D + + + Sbjct: 1 MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPL-KGQDPMAYAVD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I ++ ++LP PVIK+ L+ K+ ++ E+ RK+ + EK LK+++ L+PRAF+ Sbjct: 60 GFIFCTYQETARLLPGPVIKELLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +T + IDT +MVD +SA + E+ +A LRK++G+LPV + + + + W+R Sbjct: 120 RSRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLPVAYPAPNSAPYTSFSNWLR 179 Query: 182 SGS-AAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +GF L D ELK + ++G ++ DL EEI H+E G V T++ L WQ + Sbjct: 180 DTKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSL 239 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 + + D +KR+K D L++ + +D ED A L L I +L Sbjct: 240 ELDINDKLEIKRIKALDLLQENIDALDAEDAVAELQARISLQGKVLRDAIDSLYGYF 296 >UniRef50_A2SM13 DNA recombination-dependent growth factor n=19 Tax=cellular organisms RepID=A2SM13_METPP Length = 312 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 159/299 (53%), Gaps = 2/299 (0%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 FKNL VYR+ E S A ++E++LA+ FT CG+ GWVPP G AL GQ Sbjct: 2 FKNLTVYRIGPEWSGSATQIEERLATARFTECGATQALSAGWVPPRGQAHGALVESVAGQ 61 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 + E+K+LP+ V+K+ + + E + RK + LK++ LLP AF++ Sbjct: 62 WLATLMVEQKLLPAAVVKRRTDELAQRAEHDTGRKPGRKHLKELKEQAALELLPMAFTKR 121 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 + +W+D L++VD +S +A D + L K L LPV PL + W+ G Sbjct: 122 ATFRVWLDPQRRLLIVDASSPARAGDVVTHLVKVLDGLPVAPLQTALSAATAMAAWLADG 181 Query: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 Q F + E ELKS E V+R + L ++E+ HI GK T+LAL WQ R+ FV Sbjct: 182 EPPQAFSVDRECELKSDDEQKSVVRYARHRLDTDEVRQHIGEGKRPTRLALTWQGRVSFV 241 Query: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 + D G +K+L F D + D + R D FDAD + TGEL LI +L++ LGGEA Sbjct: 242 LTDAGQIKKLDFLDGVFDAHP--GRADADAAFDADVAIATGELVQLIPDLVDALGGEAD 298 >UniRef50_C7RD57 Putative exonuclease RdgC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RD57_KANKD Length = 301 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 161/296 (54%), Gaps = 2/296 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N +Y L+ EE+ + L + F+ G QD +GW+ P+ + L H AN Sbjct: 1 MWFRNCYIYHLTSSFQHSPEELAELLENQRFSSVGRQDTETLGWISPLNRQFEHLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++C RKE+K++P+ ++K+ LE +++ +EAE+ RK+ EK +LKD++L L P+A S Sbjct: 61 GCILLCLRKEQKVIPASMVKETLEERVSTIEAEEGRKVFGKEKTALKDDILSLLKPKALS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S T +ID N L++++ S A+ + LL SLG+L V L E + W++ Sbjct: 121 KSSHTYGYIDPRNNLLVINAGSNAVADSFIELLIDSLGTLGAVRLMGEESPSAIMNRWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G + L + E K D V + K + ++ I + +E G V KL + ++ + Sbjct: 181 DG-LPYDWTLTGQYEFKDPQND-RVAKFKDSEESNPLIDDLLEDGYWVEKLGIRYKDQFN 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 V+ D +K +KF DEL +NE+ID + R DAD +LM+ LA I L Sbjct: 239 AVIQSDMLIKSIKFDDELLKENEEIDDIEPYARLDADLVLMSQTLAEFIAELKTEF 294 >UniRef50_A4JWD6 Putative exonuclease, RdgC n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JWD6_BURVG Length = 369 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 12/303 (3%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +++L+ + ++ A+ + +LA AF+PC +G+V P + N Sbjct: 1 MWFKNLTLFKLT-DFAIDAQTLSDKLAKAAFSPCTDLQEKSVGFVTPRPDSPH--VYAVN 57 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G+ +I R +++ LP V+K+ + + A+ E E K + LK++ + +LLP+AF Sbjct: 58 GEFLIALRTQKRNLPGSVVKEEVARRAAEYEKEYGHKPGRKMLKELKEQSIDALLPQAFK 117 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVV--PLSMENPIELTLTEW 179 T WI GL+++D AS A+D + L +++ +PV PL+ +++W Sbjct: 118 TSRTTHAWISPKAGLLVIDTASTAIADDFIGALLRAI-EVPVKLHPLATNTAPSAAMSKW 176 Query: 180 VRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQR 239 + + +A + GG I+ + ++ +EAG+ V+ LAL W + Sbjct: 177 LLD-EPPSFLTIDSDAVFVTT--HGGNIKYSNTPVEGDDAKRQLEAGQRVSSLALTWDDK 233 Query: 240 IQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 + FV+ G++KR+K D L+ + D ED F +DF+LM G LA ++ L+E LGG Sbjct: 234 VSFVLAGKGTIKRVKALDVLKGEAADKADEDS---FASDFLLMAGTLAQMVGELVESLGG 290 Query: 300 EAQ 302 E + Sbjct: 291 ERE 293 >UniRef50_Q1N0M2 Recombination associated protein n=1 Tax=Bermanella marisrubri RepID=Q1N0M2_9GAMM Length = 306 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 160/299 (53%), Gaps = 8/299 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 + +N Y L++ + + +L+ F PC + GWV P + D L + A+ Sbjct: 1 MQIRNFYWYALTKPLD-DTASVAGKLSKAPFAPCMATQEMSQGWVAPAPNTDD-LVYEAH 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++ ++E+++LP+ VI L ++ E + + K +KDEV+ LLPR+F+ Sbjct: 59 GAILLMLKQEKRLLPASVINDFLAERVEAFEQAEGYAPSRKIKQQMKDEVVQDLLPRSFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + + + I G + V +S+K A+D A LR++LGSLP+ ++ E T+T+W++ Sbjct: 119 KSLRLPVMIMPRQGWLFVLSSSSKTADDVTAFLRETLGSLPIALMNSEVSPAFTMTQWLQ 178 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + + + +E EL E +R KKQ L SEE+T H++A K V KLAL W++ I Sbjct: 179 QPKTLPDNWTVGEEVELVDAEE--ASVRIKKQSLYSEEVTAHLDASKQVAKLALLWREDI 236 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 Q ++ DD S+KR+K + + ++ ED RF +F + L L +L++ LGG Sbjct: 237 QILLQDDLSIKRIKS---IAEPDDMDMPEDPLARFAHEFAVTCQWLKPLCDDLLKALGG 292 >UniRef50_A1VR42 Putative exonuclease, RdgC n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VR42_POLNA Length = 351 Score = 309 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 160/306 (52%), Gaps = 11/306 (3%) Query: 4 FKNLMVYRLSREISLRA-EEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANG 62 FK+ +R++ + L + +E+ L S F PCG+ +GWVPP G+ S + Sbjct: 25 FKSASFFRIATDFVLPPLDALEEALQSAQFMPCGATQAESVGWVPPRGNKSTVMVETVGT 84 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQAR-KLKKTEKDSLKDEVLHSLLPRAFS 121 Q+++ E + LP+ +K +E ++ K + E R ++ K K+E + SLLPRAF+ Sbjct: 85 QVILRLSIERRPLPASAVKAEVEERVEKYKQETGRERVSAKIKKEFKEEAIQSLLPRAFT 144 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLP-------VVPLSMENPIEL 174 + S T +WID VN ++VD S A+ ++ L ++L +P P+ Sbjct: 145 KRSSTTLWIDPVNKFLVVDSGSLTGADKVVSQLIEALSEIPGTRPGLMAKPVQTTMAAGA 204 Query: 175 TLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLAL 234 + W+ S A F + + ELK + +R + L +E+ HI +GKV T+LA+ Sbjct: 205 AMAHWLASREAPVSFTVDRDCELKMPDDQKSTVRYSRHTLEIDEVAEHIASGKVPTQLAM 264 Query: 235 DWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLI 294 W +R+ FV+ D +K++K D + D ++ ++D AD ++TGEL+ LI +L+ Sbjct: 265 TWNERVSFVLTDMAQIKKIKLLDVVLDGVQENGKDDDGFD--ADAAIVTGELSDLIPDLL 322 Query: 295 EGLGGE 300 E LGGE Sbjct: 323 EALGGE 328 >UniRef50_Q1QVI8 Putative exonuclease, RdgC n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVI8_CHRSD Length = 308 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 181/303 (59%), Gaps = 3/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK+L +YRL + + +E L + AF P + ++GW P G H H Sbjct: 1 MWFKHLHLYRLHDTTPVALDALETALEAFAFRPVSPSEGKRLGWQCPAGRHGQQRVHEIQ 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ A ++E++LP+ VI++ +E + A+ EA + R L + ++ ++K++V+ LLPRAF+ Sbjct: 61 GHRLLSALRQERLLPASVIREEVEERAAEREAAEGRPLPRRDRQAIKEQVVEELLPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + +W DT GLI ++CAS +AE+ L LLR+SLGSL V PL++ T+T W+ Sbjct: 121 RSQRIDLWWDTARGLIAINCASRTRAEEALDLLRQSLGSLQVTPLTVRQLPSRTMTTWLE 180 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 S +G +L D+ ELK +DG V RA+ DL +E+ + + G+ ++LALD + ++ Sbjct: 181 DMTSRPEGLRLGDQVELKDAGDDG-VWRARGIDLDGDEVQSVLAGGRQASRLALDIEDQL 239 Query: 241 QFVMCDDGSLKRLKFCDELRDQN-EDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 V+ DD +LK L+F D + D+ ++ D +D R + DF LM L+ I+ LI+ LGG Sbjct: 240 SLVLHDDLTLKSLRFADAVLDEASQNEDDDDPILRLETDFALMAHVLSGFIEQLIDWLGG 299 Query: 300 EAQ 302 EA Sbjct: 300 EAD 302 >UniRef50_A4BHD8 Recombination-associated protein RdgC n=1 Tax=Reinekea blandensis MED297 RepID=A4BHD8_9GAMM Length = 295 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 157/295 (53%), Gaps = 9/295 (3%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL V+ + AE++ ++LA FTP + GWVP S + Sbjct: 1 MWFKNLQVFSFTDAFQFTAEQVNERLAQHEFTPISQMQESSFGWVPSF-KDSSLFCEQVS 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G++ A+ ++KILP+ VI L K+ +E E+ R+ + E++ LK+++ LLP+AF+ Sbjct: 60 GRLFFTAQIQDKILPASVINDHLIEKLDAIELEEGRRPARKEREQLKEDIRAQLLPKAFN 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + Q WID G ++V+ +S K A+D A LR++LG+L V+P + LTEW Sbjct: 120 KTRQLSAWIDPAKGWLVVNASSDKSADDFTAHLREALGTLQVIPFAKSTSGSDLLTEWFM 179 Query: 182 SGSA-AQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + +L + EL + + R K DL++ EI +E+G V ++A++ Sbjct: 180 DATTRPADTELEADLELTMVQDPTVKARFKNLDLSAPEIQQALESGMRVRQMAMNLIDHC 239 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIE 295 QFV+ + +KRLK+ + L ++ D ED +D ILM+ ++ L+Q LIE Sbjct: 240 QFVINEKLQIKRLKYQEALLEKAH--DNEDPR----SDAILMSDTVSHLLQ-LIE 287 >UniRef50_Q5ZW99 Exonuclease involved in removal of stalled replication fork n=6 Tax=Legionella RepID=Q5ZW99_LEGPH Length = 314 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 8/304 (2%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 ++WF N ++++ + + L A PC GWVP + H Sbjct: 2 IMWFNNALMFQYKLDGGCD---LNHSLTEEALKPCPPHARFTYGWVPAF---EQEMVHEV 55 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 G +IC KEE+ILP VI + L+ KI ++EA Q R +K+ EK + +++ LLP++F Sbjct: 56 AGSTLICLGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSF 115 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + + +D+V+ ++++ +S +A + LRKS+ + + PL++ + L EW+ Sbjct: 116 CVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLNLTENLALRFAEWI 175 Query: 181 RS-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQR 239 S + FQL + L SL ++ + K +L +EEI + G +++L W++R Sbjct: 176 HSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKER 235 Query: 240 IQFVMCDDGSLKRLKFCDELRDQNEDIDR-EDFAQRFDADFILMTGELAALIQNLIEGLG 298 IQF + D + K+LK D L D +I + E+ QR DA L++GEL L L++ Sbjct: 236 IQFTLTQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFV 295 Query: 299 GEAQ 302 A+ Sbjct: 296 NHAE 299 >UniRef50_D0ZDE3 Recombination-associated protein RdgC n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZDE3_EDWTE Length = 229 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 128/209 (61%), Positives = 166/209 (79%), Gaps = 1/209 (0%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 KN+++YRL+R+I L A+ +E + M FTPC SQDM++ GW P+ + +L H ANG + Sbjct: 7 KNVLIYRLTRDIDLDAKAIEAAITPMTFTPCASQDMSRSGWTAPLATAG-SLIHAANGYL 65 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFS 124 ++ R+E+KILP+ VI++ L +IAKLE EQ RKLKKTEKD+L+DEVLHSLLPRAF+R Sbjct: 66 LMRYRREQKILPAAVIQKHLRERIAKLEQEQCRKLKKTEKDALRDEVLHSLLPRAFTRTH 125 Query: 125 QTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGS 184 Q+ +WIDT L+MVD A+AKKAED L+LLRKSLGSLPVVPL+M+ PIE+TLT+WVR+G Sbjct: 126 QSWLWIDTAKKLVMVDAANAKKAEDILSLLRKSLGSLPVVPLTMKTPIEITLTQWVRTGK 185 Query: 185 AAQGFQLLDEAELKSLLEDGGVIRAKKQD 213 A GF L DEAELK+ LEDGG+IR K+QD Sbjct: 186 APAGFTLGDEAELKATLEDGGIIRTKQQD 214 >UniRef50_Q5NWY5 Predicted DNA recombination-dependent growth factor C (Exonuclease) n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWY5_AZOSE Length = 314 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 129/298 (43%), Gaps = 9/298 (3%) Query: 10 YRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICAR 69 + S + EE+E+ LAS F+ G D+ +GWV P + L H + ++ Sbjct: 7 FVFSCDCPHSPEELEEVLASRKFSGIGQLDVDHLGWVNPRELENGPLVHAVDSIFLLALS 66 Query: 70 KEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMW 129 KE KI+P+ +K+ L A A + R + E+ +LK++V SLLP A +R QT Sbjct: 67 KETKIVPASTVKKKLAAAEADATKREGRPPSRKERKALKEQVYESLLPGAPTRIKQTFGV 126 Query: 130 IDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVP----LSMENPIELTLTEWVRSGSA 185 + ++V SAK ED + S + P L P L +TEW+ + Sbjct: 127 LIPPKKQLLVLTTSAKCLEDFHGVFTDSFMKRGMRPSFRKLRTVQPPSLKMTEWLLNNEC 186 Query: 186 AQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMC 245 GF L + EL + +R +L EI H+ GKV KL L + F++ Sbjct: 187 DGGFVLGEHCELT---HEKSKVRYTALELDRPEIREHLLEGKVPVKLGLRHESTTSFIIS 243 Query: 246 DDGSLKRLKFCD-ELRDQNEDIDRE-DFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 + + L F D + + E + FD+D + E ++ L E GG A Sbjct: 244 CGSADEDLGFSKIHYGDNDGKTEGEGTADEVFDSDLVFSVTEFLGIVNELFEAFGGIA 301 >UniRef50_D0KZJ6 Putative exonuclease RdgC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZJ6_HALNC Length = 296 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 90/296 (30%), Positives = 139/296 (46%), Gaps = 7/296 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++F+ L VYRL E + L F+P Q +GW +G + H + Sbjct: 1 MFFRQLSVYRLESECP-DFSTLNTALKEHPFSPTRPQQAESVGWQTAIG---EQYVHETD 56 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I ++EE+ +PS V++ + ++ + K EK +++D VL LLP+AF Sbjct: 57 GAARIVLQREERSVPSSVVRDMADQRLLARAGTTG-EPSKAEKIAMRDAVLLELLPQAFP 115 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S T ID N + D +A K E T LR+ +G +VP I L W+ Sbjct: 116 RQSNTQAIIDRKNQQVWFDTLTATKIERTSNQLREQIGQWRMVPFFGIQDISAHLASWLL 175 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ GF + + A+L L E GG + K L + H+ G V +L L W+++I+ Sbjct: 176 -GTPPTGFDIGEGAKLVDLRE-GGTVTVSKLALPDPHVVAHLHEGMKVDQLELIWREQIR 233 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 F + DG L ++K + L + +D Q+ DAD LM G L LIQ+L L Sbjct: 234 FTLRADGGLAKIKPTELLDTDDSGEMIDDADQQLDADQRLMVGALRQLIQDLANVL 289 >UniRef50_B0U148 Recombination associated protein n=19 Tax=Francisella RepID=B0U148_FRAP2 Length = 288 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 16/296 (5%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++FKNL ++++ + + E + +AF PC + + G+ P L N Sbjct: 1 MFFKNLTAFKIT---DINIDIFEDSMNKLAFIPCSNSQKSSRGFTNPFIKDEQCLFKF-N 56 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 C EEKILP+ VI Q + I +LE R + K EK +K+++ LLP AFS Sbjct: 57 HLAAFCLLTEEKILPAQVINQQAQEYIQELEL--TRYVSKKEKTQIKEDMEQKLLPLAFS 114 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +F + ++D N +++D AS K+ + L LL + P+ E LTEW+ Sbjct: 115 KFRKIHGYLDLTNNYLIIDSASEKQITEVLDLLHRCEARF--EPVIKEE--TDILTEWLV 170 Query: 182 SGSAAQGFQLLDEAELKSLLEDG-GVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + ++ ++ +L S + D I + + ++ I + I++G +T+LA+ W++++ Sbjct: 171 EDTYPVDIEIAEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITELAITWKEKL 230 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEG 296 K +KF D ++ D+++ED + D +LM A LI + Sbjct: 231 AMTTNTKLQFKSIKFLDGIK----DLNKEDNVGH-EVDLLLMADIFAELITAMQSW 281 >UniRef50_D1RMX8 Putative exonuclease n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX8_LEGLO Length = 232 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 2/216 (0%) Query: 83 ALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCA 142 LE K E R +++ E LK+E+ LLP+AFS + +IDT + ++ A Sbjct: 1 MLEEKNNAFELNHKRPMRRAEILQLKEEIKFDLLPKAFSVQKKDWFYIDTNKQWLFINSA 60 Query: 143 SAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV-RSGSAAQGFQLLDEAELKSLL 201 + KA + + LL K+LGSL PL + + W+ + S +G L L + Sbjct: 61 NPTKASEVITLLTKALGSLDAAPLMPNSDLSTLFARWLHQPTSFPEGLMLAKSYVLVTSG 120 Query: 202 EDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRD 261 ED K + EE+T ++ G V+ + L WQ+R+QFV+ ++ LKRLK D L + Sbjct: 121 EDKSYYTCKDIEENIEELTALLDQGYTVSSIELIWQERVQFVLNNNFLLKRLKCLDYLDE 180 Query: 262 QNEDIDREDFAQ-RFDADFILMTGELAALIQNLIEG 296 +D D++D Q +FDA+F L+TGEL LIQ L++ Sbjct: 181 AFKDKDKQDNDQEQFDANFSLLTGELRDLIQFLMDA 216 >UniRef50_A8TCH0 Recombination associated protein (Fragment) n=1 Tax=Vibrio sp. AND4 RepID=A8TCH0_9VIBR Length = 342 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 126/314 (40%), Gaps = 21/314 (6%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMG-SHSDALTHVANGQ 63 K Y L + + +EK+ P +G+V PM S D + + Sbjct: 1 KQCTPYYLP-AFAYSLDTLEKRFEEFRAKPLSDTGTESLGFVSPMCLSRDDLIIKLGCLY 59 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQA----RKLKKTEKDSLKDEVLHSLLPRA 119 +E+KI PS V K+ + +++K+ E+ KL+ +K+E+L +P Sbjct: 60 GFRLKIQEKKISPSKV-KEVVSQRVSKIMEEKPGLDQAKLENEYYGQVKEEILRLEIPSV 118 Query: 120 FSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEW 179 + +IDT +G + V+ S K+ L LLR SLGS +P+ E L+ Sbjct: 119 ----NYVTAFIDTESGYLFVNDKSDKRCAQLLKLLRHSLGSFVALPVDTEYQPSDVLSRA 174 Query: 180 VRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDW--- 236 ++ F +D E + D + + + E+ + GK +T++ L + Sbjct: 175 LQGEGKLSDFLRVDYYEQIKAVGDKATKQISFKGIQIEKDELEVLKGKSITQMGLVFCAN 234 Query: 237 ---QQRIQFVMCDDGSLKRLKFCDELRDQNEDIDR--EDFAQRFDADFILMTGELAALIQ 291 I D L F + + + N DR F+A++++ L +I Sbjct: 235 EDETWAITIASKRDKYFYILNFVEPIPNSNLLADRLFSTCDDDFNANWLITADRLNRIIY 294 Query: 292 NLIEGLGG--EAQR 303 +L E GG E+ R Sbjct: 295 SLNESFGGRIESNR 308 >UniRef50_A1U7Y4 DNA recombination-dependent growth factor C-like n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7Y4_MARAV Length = 290 Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats. Identities = 60/306 (19%), Positives = 135/306 (44%), Gaps = 23/306 (7%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGW-----VPPMGSHSDALTH 58 K L +Y++ + EEME + C + + +G+ +P +H Sbjct: 2 IKQLRIYQIGDDNPPSIEEMEAVANNYPARECQHLEQSTIGFREFDTIPDTRVIQLEGSH 61 Query: 59 VANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPR 118 +++ ++ +P +++ L+ ++ + E+ ++ K + ++ E++ LP+ Sbjct: 62 FIYAELLAF----KRSVPKSFLERELKKRVKQRESR-GEEVAKGDYKEIRAEIVREQLPK 116 Query: 119 AFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTE 178 + T + ++ + +S A+ + LLR++ + P+ +E+ L E Sbjct: 117 MPQSETVTPIVFQAISKHCWIGASSDGGADAAITLLRRAGLNFAFTPIFEGINMEMWLME 176 Query: 179 W-VRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQ 237 W ++ G L ++A++K LE I +DL E+ + + + + L L Sbjct: 177 WMLQRQELPAGMILGEKAKIKDELEPKSTITINNEDLRDSELQA-VASSRSIAALELHC- 234 Query: 238 QRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 +++ F++ DGSLK +K+ E++D D D A R A ++L+ E ++ L + Sbjct: 235 EKMTFMLHRDGSLKSIKY--EIQDDTFD----DLAHR--AGYLLL--ETDNTLKTLFTAV 284 Query: 298 GGEAQR 303 G A + Sbjct: 285 GAPANQ 290 >UniRef50_A3JHF7 Recombination associated protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JHF7_9ALTE Length = 321 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 120/297 (40%), Gaps = 16/297 (5%) Query: 8 MVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVP---PMGSHSDALTHVANGQI 64 ++ +S A ++ + C Q+ G+ G+ + T + NG+ Sbjct: 7 TLFAMSVAEVPSASQITRVGREYPVRECKFQEEKFWGFKSFDGKEGTDEEFATPLYNGRW 66 Query: 65 -VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 + + I+P PV+++ + KI + + + +K +K++V +L +AF + Sbjct: 67 IHLQIANFKPIIPGPVVRRHVAEKIKEFTKQHGEEPGSKKKREIKEQVRDTLRQQAFQKE 126 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 + + D+ + ++ S + L +LR+ LGSLP VP+ + W+ Sbjct: 127 TIHQVIFDSKTNQVWLEATSETVQTEILRVLRRGLGSLPAVPVLEVANLPSIFAGWIAGE 186 Query: 184 -SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 +GF + D A+ + I + L + ++ + I ++V ++ L I Sbjct: 187 RDLPEGFHVGDSAKAIDPDDPKATITLTHEVLQAPDLQS-ILGTRMVKQMGLK-SANISA 244 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 V+ D LK ++ ++ +D D L E++ L+ L +GG Sbjct: 245 VINDQSLLKSIRLS---------VETDDADADADHMMALWCTEISELLAMLRADIGG 292 >UniRef50_B7MW52 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=B7MW52_ECO81 Length = 355 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 124/282 (43%), Gaps = 17/282 (6%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 F+N +VYR + + +E L + ++ G + ++ +V + +T ++ G Sbjct: 56 FRNAIVYRATLP---SIQAIEGHLLELPYSEIGETEFSRSSFVE-NPVTGELVTPISGGY 111 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 ++ R ++KI+P V+ + ++I +E KLK+ E+ ++ D V L +AF + Sbjct: 112 AMV-IRHDQKIIPRHVVMKEANSRIQTIENMSGNKLKRAERLAIIDNVRVDLCKQAFVKS 170 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLS---MENPIELTLTEWV 180 + + T L++++ + A A+L K +GS+ ++ ++N + L ++ Sbjct: 171 TLILALYSTDEKLLVINTTNKIIAGMVCAMLIKVVGSVKTETINISDIKNGLTTRLNNYI 230 Query: 181 RS-GSAAQGFQLLDEAELKSLLEDGGVIRAKK-QDLTSEEITNHIEAGKVVTKLALDWQQ 238 +A +GF + + +L + +IR + E+ + + + K+ L Sbjct: 231 NGAANAFEGFTVGNYIQLSRYADQKEIIRYSAEHESIQSELADSLSSSFTADKMELS-GC 289 Query: 239 RIQFVMCDDGSLKRLK-----FCDELRDQNEDIDREDFAQRF 275 + F++ ++ R+ F DE D+ + A F Sbjct: 290 GVTFILTENFHFSRINTQSQTFNDE-DDKAFQWRHQTGADLF 330 >UniRef50_B7WYI4 DNA recombination-dependent growth factor C-like protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WYI4_COMTE Length = 167 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Query: 227 KVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGEL 286 K+ +KLA+ W R+ FV+ + +K + D + D N D FD D + TGEL Sbjct: 64 KLPSKLAMTWDDRVSFVLTEGLQIKNITLLDAVMDGNSKDDSG-----FDTDVAIATGEL 118 Query: 287 AALIQNLIEGLGGEAQ 302 ++L+ +LIE LGGE + Sbjct: 119 SSLLPDLIEALGGEGR 134 Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 43 MGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT 102 MG VPP G L Q V+ E K+LP+ V+ + + K +E + RK K Sbjct: 1 MGRVPPRGEQHGPLVE----QRVMRFMTEAKVLPASVLNRKVNEKAEHIEKTEGRKPGKK 56 Query: 103 EKDSLKDEVLHSL 115 E+ LKD++ L Sbjct: 57 ERRELKDKLPSKL 69 >UniRef50_D2K0C7 Recombination-associated protein n=1 Tax=Staphylococcus phage SA1 RepID=D2K0C7_9CAUD Length = 358 Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 107/287 (37%), Gaps = 25/287 (8%) Query: 22 EMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKE--EKILPS-P 78 L + MG+ G I + E E++LP Sbjct: 53 AFSDALEKHEVSDPPEASYKTMGFAAYGEEVDSKFALAIPGTNAIVFQIEKRERVLPGVS 112 Query: 79 VIKQALEAKIAKLEAE-QARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLI 137 V + ++ A E E + + + + +KD+V +L A R S+ + + + Sbjct: 113 VRNEVVKRMAALREKEIEGWEPNRKDWAQMKDDVEAEMLKHAPIRPSRVNVILSAP--FV 170 Query: 138 MVDCASAKKAEDTLALLRKSLGSLPVV-PLSMENPIELTLTEWVRSGSAAQGFQLLDEAE 196 V +SAK AE+ AL+R +LG+ PV L E + + V G + Sbjct: 171 YVFTSSAKTAEECSALIRTALGTWPVEHLLPSEYELRQLMQRAVLGQQ--DGIKGDAFIH 228 Query: 197 LKSLLEDGGVIRAKKQDLTSEE-ITNHIEAGKVVTKLALDWQ------QRIQFVMCDDGS 249 LK +DG ++ K D+ +E + + + V L L+ + F + D Sbjct: 229 LK--HDDGDDVKMKDTDIFKDESVIDLLSRHWTVRALDLEVDTQCPGIDTVYFRLSDKAI 286 Query: 250 LKRLKFCDELRDQNEDIDREDFAQRFDAD---FILMTGELAALIQNL 293 L + + + + D + + +R+ D F+ M L L ++L Sbjct: 287 LSGI----HIGEADVDANYDATLERYGTDGGQFLTMMANLFQLDKSL 329 >UniRef50_Q7WXD3 Putative uncharacterized protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WXD3_RALEH Length = 144 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 177 TEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDW 236 +W+ +A GF + E EL+S E +R + L +E + HI AGK T+LA+ W Sbjct: 1 MQWLAGDAAPSGFTVDQEIELQSGAESKATVRYVRHPLDAENLRRHIAAGKRCTRLAMTW 60 Query: 237 Q 237 Sbjct: 61 N 61 >UniRef50_B6XBN9 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBN9_9ENTR Length = 300 Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 106/288 (36%), Gaps = 23/288 (7%) Query: 18 LRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPS 77 AE +E L + F G++P + L G +I R +EKILP Sbjct: 17 PNAEALENHLKELPFVDILESHSFSYGFIP--NKVTGELVTPIEGGYIINFRIDEKILPK 74 Query: 78 PVIKQALEAKIAKLEAEQARKLKKTEKD--SLKDEVLHSLLPRAFSRFSQTMMWIDTVNG 135 I + +I KL+ + T+ +K + LL A ++ G Sbjct: 75 AAIAFEINKRIEKLKEQ-----GITDYLVPEIKRMAIDELLKIALTKTKVITALYHVSKG 129 Query: 136 LIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM---ENPIELTLTEWVRSGSAAQ----G 188 + + + + L K G++ ++ +N I L+ + + S + Sbjct: 130 FLFISTTRKPDYQALVGSLVKVCGTVKTETFNIDDAKNGITTRLSNHIDNLSPEECFGHD 189 Query: 189 FQLLDEAELKSLLEDG-GVIRAKKQ-DLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCD 246 + L+ ++ ++ + +L E++ + ++ V+ + L I F + D Sbjct: 190 LHPGNFILLQRKVDKKLETVKYDAELNLIREQVKDSLDNHFKVSLIELSTFDLI-FKLTD 248 Query: 247 DGSLKRLKFCDELRDQNEDIDREDFAQRFDADFIL-MTGELAALIQNL 293 + K +K ++ D D+ + +A F+ M + LI+ L Sbjct: 249 NFDFKSIKPLAKIE---CDGDKAYRYRHTNAVFMFHMVNTIELLIELL 293 >UniRef50_Q7Y3W9 Recombination associated protein n=1 Tax=Yersinia phage PY54 RepID=Q7Y3W9_9CAUD Length = 325 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 114/322 (35%), Gaps = 37/322 (11%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M FK + EI L +M + + AF + GW D ++ Sbjct: 6 MKMFK--TCFPYLTEIEL-PADMAELVEKKAFDGLTDSARSGFGWS---KIVPDVRMIIS 59 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 +G+ ++ RK E++ ++Q +E + K E E + + + ++ A Sbjct: 60 DGRALLLYRKSERVENRAAVQQLVEERQKKAE-ENGIVVSDDLLREFEHTATNEIIRFAP 118 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + + I V I V A+A K ED L+LLRK+LGSL P L++ + Sbjct: 119 LKTWSAYILICPVEKHIYVSAANAAKCEDALSLLRKTLGSLYATPWGFGGLEATVLSDHL 178 Query: 181 RSG-------SAAQGFQLLDEAELKSLLEDGGVI-RAKKQDLTSEEITNHIEAGKVVTKL 232 + + D + + S E + I +G + + Sbjct: 179 SCEAGKTNYYPLPDSLIISPFGKTIFTGSDSSLKGTFDGVGINSPEAKSLI-SGMKIRSV 237 Query: 233 ALDWQQRIQFVMCDDGSLKRL-KFCDELR---------------DQNEDIDREDFAQRFD 276 + + +R DG LK L +F + ++ + + +D + Sbjct: 238 EMAFVER-----PADGQLKNLAEFSLHIPANGNLHFKGYDYDNDERMSEEEADDAQHVYA 292 Query: 277 ADFILMTGELAALIQNLIEGLG 298 + +L+ +++NL G Sbjct: 293 VEMLLVASYTPQIMRNLATFFG 314 >UniRef50_UPI000045D917 COG2974: DNA recombination-dependent growth factor C n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D917 Length = 109 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M WFKNLM YRL++ + +E+QL AFTPCG DM+K GW P+ S SD+L Sbjct: 1 MFWFKNLMTYRLTQAVDFS--NLEEQLKQTAFTPCGKSDMSKFGWSAPL-SASDSLCFRQ 57 Query: 61 NGQIVICARK 70 +I + K Sbjct: 58 GSNTLIVSHK 67 >UniRef50_Q2LSX3 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSX3_SYNAS Length = 409 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 90/220 (40%), Gaps = 22/220 (10%) Query: 8 MVYRLSREISLRAEE-MEKQLASMAFTPCG-SQDMAKMGWVP---PMGSHSDALTHVANG 62 +YRL + +A++ + +QL + AF G + + MGW + + + ++ Sbjct: 44 SLYRLEGSLPQQADDFINQQLQAFAFRNIGLTSEEKAMGWTSLENVLDTDFEGAKYIWGD 103 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARK-LKKTEKDSLKDEVLHSLLPRAFS 121 +++ R ++K +P ++K L AE +K + + +++ +++ V L FS Sbjct: 104 YLMLALRVDKKTVPPSLLKIRLMEAEQDFLAETGQKRVYREQREDIRERVHLEL----FS 159 Query: 122 RFSQTMMW----IDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLT 177 + + +++ S K +D +++ SLP+ P + +P+ Sbjct: 160 KTPPVPAFYEFCWSVSQKTLLLCTLSEKVIDDFQDFFKQTF-SLPLYPYTPWDPL----- 213 Query: 178 EWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSE 217 W+ L ++A L + G+ + L E Sbjct: 214 -WL-DEELTSRLSLAEKAGLPDAVGTAGLAAVDRTSLGRE 251 >UniRef50_A6DPQ5 Hypothetical cytosolic protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPQ5_9BACT Length = 372 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 17/201 (8%) Query: 9 VYRLSREISLRAEEMEKQLASMAFTPCGSQ-DMAKMGWVPP--MGSHSDALTHVANGQIV 65 VYRL ++ E + + A A P D + GW + + T + + Sbjct: 12 VYRLDEDL---PENILELFAENAALPLNQVKDESSNGWTARHLLERNFTEETCLIEDYVQ 68 Query: 66 ICARKEEKILPSPVIKQALEAKIAKLEAEQA-RKLKKTEKDSLKDEVLHSLLPRAFSRFS 124 + R E + +P++K + E+ + + K +K+ ++ LL Sbjct: 69 VHFRASELKVSAPILKAKCAQVEFQTMQEENLSGINRKRKKEIKENIIDELLAETQPTIK 128 Query: 125 QTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGS 184 + +D N L+ V +SAK A+ LALL +S G P+ PL+ + +TE + GS Sbjct: 129 GFPLVLDPTNKLLYVGTSSAKSADSALALLVESTGLSPI-PLT----PQTYMTEQL--GS 181 Query: 185 AAQGFQLLDEAELKSLLEDGG 205 A + D +L ED G Sbjct: 182 MASSY---DSIKLTDSQEDAG 199 >UniRef50_B5E9U0 Putative uncharacterized protein n=8 Tax=Desulfuromonadales RepID=B5E9U0_GEOBB Length = 396 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 7/161 (4%) Query: 25 KQLASMAFTPC-GSQDMAKMGWVP-PMGSHSDALTHVAN---GQIVICARKEEKILPSPV 79 KQLA+ F P + +GWV SD T A ++ R++++ +PS + Sbjct: 30 KQLAANRFNPIDQGSEEMSIGWVHLDDPKASDFETPAACCREHYLMFTLRRDKRSVPSAI 89 Query: 80 IKQALEAKIAKLEAEQAR--KLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLI 137 +K LE + AE K+ K +++ LK+ V LL + + DT +G++ Sbjct: 90 LKAHLEKAQDEFLAENPGFTKVPKQKREDLKEAVQAMLLSQTLPTPATYDAVWDTRSGIL 149 Query: 138 MVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTE 178 S K E +K+ L V E L E Sbjct: 150 TFTSLSPKVIELFEEQFKKTFEGLRVSAFHPYARAENVLDE 190 >UniRef50_A0LPT8 Conserved hypothetical cytosolic protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPT8_SYNFM Length = 389 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 54/303 (17%) Query: 23 MEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDAL---THVANGQIVICARKEEKILPSPV 79 ++++L F G+ + ++ + R +++ +P V Sbjct: 27 VDEKLNEGMFKDPDDGQELAQGFTSWEDFFESSFPYGSYHKGEYLAFNFRIDQRKVPPIV 86 Query: 80 IKQALEAKIAK-LEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIM 138 +K+ + + K + + + + EK +++ V LL RA + + +T ++ Sbjct: 87 LKKYVREAVRKHRDENEGKWPARHEKIEIQENVRSWLLSRALFQPVACEVVWNTARKWLL 146 Query: 139 VDCASAKKAEDTLALLRKSLGSLPV-----------------------VPLSMENPIEL- 174 V SAK + L PV +++++P+ + Sbjct: 147 VGTTSAKLLDVFLTHFEDMFHMYPVPLYHVHWALNLLPLDGRQKDHLGSMITVQSPLAMD 206 Query: 175 -------TLTEWV--------RSGSAA---QGFQLLDEAELKSLLEDGGVIRAKKQDLTS 216 W+ L + L E + Q + Sbjct: 207 EGRFLGYEFLTWLWFFVEHHGGRIEIPGKVAELHLGERFVLNKPGEGMERVVCTTQANSL 266 Query: 217 EEITNHIEAGKVVTKLALDW---QQRIQFVMCDDG-SLKRLKFCDELRDQNEDIDREDFA 272 E + GK+V ++ L F + + K LK Q D D+ED Sbjct: 267 HEARTGLRQGKMVHEIQLFLVVGDNEYTFTLDSALWTFKGLK----TPRQARDSDQEDQD 322 Query: 273 QRF 275 F Sbjct: 323 GEF 325 >UniRef50_D0J5F2 Putative exonuclease, RdgC n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J5F2_COMTE Length = 98 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 23/117 (19%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 K++++YR+++ + ++ L Q G P + Q Sbjct: 3 KSMIIYRIAKSWQDNLQVLDDAL----------QRQYSRGAARPTNA-------PLAEQW 45 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + E K+LP+ V+ + + K + RK K E LKDE +LLP F+ Sbjct: 46 AMRFMTETKVLPASVLNRKVNEKANR------RKPGKKELRDLKDEPKLNLLPMVFT 96 >UniRef50_D2L6Z2 Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L6Z2_9DELT Length = 319 Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 101/301 (33%), Gaps = 43/301 (14%) Query: 2 LWFKN----LMVYRLSREISLRAEEMEKQLASMAFTPC-GSQDMAKMGWVP---PMGSHS 53 + FK L VY+ ++ + E L A G+ D G VP P+ S Sbjct: 1 MSFKRGTTALTVYQTTQAGQITGE----LLQRFALLSIDGTADERGQGLVPFDTPLDHAS 56 Query: 54 DALTH-VANGQIVICARKEEKILPSPVIKQALEA---KIAKLEAEQARK-LKKTEKDSLK 108 + A + C R + + +P+ V+K+ L K + + + K K +K Sbjct: 57 WPMAQNFAGQFALFCLRVDTRRIPAAVMKKHLAEAMSKEKEAMVADGKAFISKDRKREIK 116 Query: 109 DEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 D V LL R + + +D +G + + K + AL G V Sbjct: 117 DRVKLQLLARTEPAPAIVEVAVDRTSGRVFFGSTAIKMKDTFEALWFAMTGERLV----- 171 Query: 169 ENPIELTLTE--------WVRSGSAAQGFQLLDEAELKSLLEDGGVIR-------AKKQD 213 E E L + + + + G L + E+ +E IR D Sbjct: 172 EQTPETILEDPYGVGHGVALLTAAYNGGLHLDNGMEIV--VEKKATIRSATTTMAVTAVD 229 Query: 214 LTS--EEITNHIEAGKVVTKLALDWQ-QRIQFVMCDDGSLKRLKFCDELRDQNEDIDRED 270 L + E + K+ +++ + D + +K + + E+ D D Sbjct: 230 LDNVGEAVKQLTAVEITKAKIGIEYDGNSFDLTVTPDLGMTGIKLPKT-QPKAEEGDDPD 288 Query: 271 F 271 Sbjct: 289 A 289 >UniRef50_UPI0001698F3A hypothetical protein Epers_24033 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F3A Length = 72 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%) Query: 90 KLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIM 138 +E +A ++ + E+ ++DE+ LLP+AF++ S ID N I+ Sbjct: 3 AVEEAEAPRVSRKEQREMRDEITFELLPKAFTKSSYLHAMIDRSNRWIL 51 >UniRef50_C0QIP8 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIP8_DESAH Length = 204 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 9/166 (5%) Query: 10 YRLSREISLRA-EEMEKQLASMAFTPCGSQ-DMAKMGWVP---PMGSHSDALTHVANGQI 64 YR+ EI E +++ L A + + +GW P P + + Sbjct: 13 YRVEGEIEESLVETIKEGLKKNAVSEIEDEYAEIAVGWTPFESPFDPDFEKFSFTFGTYF 72 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARK-LKKTEKDSLKDEVLHSLLPRAFSR- 122 V R ++K +PS ++++ + ++ K E R+ L K EK +KD + L+ + S Sbjct: 73 VFTLRIDKKSVPSKIVQKQVAMEVTKRLKESGREFLSKNEKTDIKDMITEKLMRQMPSIP 132 Query: 123 FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 ++WI + L+ + K A + L L K+ L ++ L Sbjct: 133 NMYDLLWIPEDHSLLFF--TTQKAANEELETLFKTSFKLKLIRLFP 176 >UniRef50_D1N7T1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=D1N7T1_9BACT Length = 363 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 48/268 (17%) Query: 16 ISLRAEEMEKQLASMAFTPCGSQDMAK----MGWVPPMGSHSDALTHVA---NGQIVICA 68 + AE E L A G D +GWV + + G + Sbjct: 13 FDIPAELPENLLDLFAAKKAGPLDAVTDEPQLGWVTGHHLLDTTINEESAQMGGSYYLTL 72 Query: 69 RKEEKILPSPVIKQALEAKIAKLE-AEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTM 127 R+ + +P+ ++ + + A + + K +++E + + + S Sbjct: 73 RQAVRKMPASLLNAVCKREEQAYMRANELEYVSSKMKKQIREEAIEKHIQKMPPALSGIP 132 Query: 128 MWIDTVNGLIMVDCASAKKAEDTL----------------ALLRK-----SLGSLPVVPL 166 M ++ L+ V +S + + L ALL + ++ S P + + Sbjct: 133 MVLEPHERLLYVGASSRSQIDLFLDMFYQTVKVEPLQLSPALLLERLCNATMASFPTLTI 192 Query: 167 SMENPIE------LTLTEWVRSGSAA-------QGFQLLDEAELKSLLEDGG------VI 207 S E + W S + F L+ EA L + D I Sbjct: 193 SGRPDAEPVTGRDFLMWLWFYSETTGKLEVPDYGEFDLMIEAPLVFAVADDAQGAEEVTI 252 Query: 208 RAKKQDLTSEEITNHIEAGKVVTKLALD 235 + L S E I GK + K L Sbjct: 253 KKGDSPLRSSEAKAAILNGKKLKKAKLT 280 >UniRef50_A1AT82 Putative uncharacterized protein n=2 Tax=Desulfuromonadales RepID=A1AT82_PELPD Length = 389 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 7/150 (4%) Query: 19 RAEEMEKQLASMAFTPC-GSQDMAKMGWV----PPMGSHSDALTHVANGQIVICARKEEK 73 + + +LA AF S D GW P + +V R++++ Sbjct: 24 QFDWFSGKLAGRAFQSIENSSDELSEGWTQVDHPDDSGFQLPSAFWRDNYLVFSLRRDQR 83 Query: 74 ILPSPVIKQALEAKIAKLEAEQA--RKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWID 131 +P+ V+K + A+ R+ K ++ +K++V L+ R + + D Sbjct: 84 RIPAAVLKSHTAREEGAFLAQHPNLRRTPKDKRTEIKEQVQLRLMTRCLPVPATVDVVWD 143 Query: 132 TVNGLIMVDCASAKKAEDTLALLRKSLGSL 161 G++ + +K E + RKS L Sbjct: 144 LKRGVLTLFSLGSKVVERFEDIFRKSFEGL 173 >UniRef50_B8FCC1 Putative uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCC1_DESAA Length = 204 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 6/164 (3%) Query: 17 SLRAEEMEKQLASMAFTPCGS-QDMAKMGWVP---PMGSHSDALTHVANGQIVICARKEE 72 E + L GS +GW P + V IV R ++ Sbjct: 21 DPVLETIRNGLEKRTIMEYGSESQEKAVGWTSLERPYLPDLSGSSFVVGPHIVFSLRIDK 80 Query: 73 KILPSPVIKQALEAKIAKLEAEQARK-LKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWID 131 K LPS V+K + + +AE R L K EK +++ V L R + + + + Sbjct: 81 KTLPSKVVKMQCTIDMERRKAETGRDFLSKEEKKQIREHVELVLYSRIPATPNVYDILWN 140 Query: 132 TVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELT 175 ++ + E+ AL +S G + ++PL ELT Sbjct: 141 VEENMLWLFSTQGAVKEELEALFFESFG-VSLIPLFPFTEAELT 183 >UniRef50_A8ZU01 Conserved hypothetical cytosolic protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZU01_DESOH Length = 204 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 8/154 (5%) Query: 21 EEMEKQLASMAFTPCGSQDMA--KMGWVP---PMGSHSDALTHVANGQIVICARKEEKIL 75 E +E+ L + + +GW P + + + R ++K + Sbjct: 25 ETVEQGLKQFTIRNI-DNEPSDKAVGWTSFEAPFSADFSGASFSYGTYFLFSLRVDKKSI 83 Query: 76 PSPVIKQALEAKIAKLEAEQARKL-KKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVN 134 P+ V+ + + K + +K+ K EK +K++VLH L R + + + Sbjct: 84 PAKVVAKCCALEAEKRLKQTQQKVLAKNEKKQIKEKVLHDLALRIPATPGVFDLVWQYED 143 Query: 135 GLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 G + E+ L K+ SL +V L Sbjct: 144 GRLWFFSTQKGANEELETLFVKTF-SLRLVRLFP 176 >UniRef50_C7LXS9 Putative uncharacterized protein n=5 Tax=Desulfovibrionales RepID=C7LXS9_DESBD Length = 209 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 11/172 (6%) Query: 7 LMVYRLSREISLRA--EEMEKQLASMAFTPC-GSQDMAKMGWVP---PMGSHSDALTHVA 60 L YR+ E + E++ +L AF S + GWV + Sbjct: 10 LTRYRIVEEDIPSSLWHEVDDRLKRNAFRDIDASAEERSFGWVSFDNMLDPDFALCPPEK 69 Query: 61 NGQIVICARKEEKILPSPVIKQA----LEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLL 116 + R + + +P V+K+ + + + + + L K +K ++++V L Sbjct: 70 GPYLTFTLRLDTRRVPPAVMKKHFAVAMNEAMRAMRDQGKKFLTKEQKTEIREQVELRLR 129 Query: 117 PRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 R + + DT + + +K E L + G L + PL+ Sbjct: 130 ARTLPIPACFDVVWDTNRQTVWIASTQSKLTELFEELFTHTFG-LHLEPLTP 180 >UniRef50_C0GT68 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GT68_9DELT Length = 204 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 6 NLMVYRLSREISLRA-EEMEKQLASMAFTPC-GSQDMAKMGWVP---PMGSHSDALTHVA 60 +L YR+ + E+ ++L S AF + D GWV + + + Sbjct: 9 SLTRYRIVENVPDELVSEVPQRLKSNAFREIDQTSDERSFGWVCFDDLLDNQWHTASPHK 68 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQ---ARK-LKKTEKDSLKDEVLHSLL 116 + R + + +P V+K+ L + + EQ RK + + K +KD V +L+ Sbjct: 69 GHYLAFALRLDTRRIPPAVMKKYLRLALEEARREQESRGRKIVTRDHKAEIKDRVKQTLM 128 Query: 117 PRAFSRFSQTMMWIDTVNGLIMVDCASAK 145 + + + D + L+ + S K Sbjct: 129 GKTLPVPAVFDVVWDVSSHLVYLGSVSPK 157 >UniRef50_Q1D7N9 Putative uncharacterized protein n=2 Tax=Cystobacterineae RepID=Q1D7N9_MYXXD Length = 214 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 5/137 (3%) Query: 23 MEKQLASMAFTPC--GSQDMAKMGWVPPMGSHSDALT---HVANGQIVICARKEEKILPS 77 + + L + AF P S++ +G+V S + + R + +P+ Sbjct: 29 LTRGLKAHAFEPIDRRSEEERAVGFVELENEESSEFSAGRLYYGEYALFAFRIDTIKVPA 88 Query: 78 PVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLI 137 +K L A E E R + EK + E+ L RA R S + + + Sbjct: 89 AALKAELAKWAAAFEKENGRPPSRGEKTQSRGEIRQMLRTRATPRTSTVDVSWNLKTQQV 148 Query: 138 MVDCASAKKAEDTLALL 154 + AS K ++ L Sbjct: 149 QIWSASRKVVDEITVAL 165 >UniRef50_B8DP41 Putative uncharacterized protein n=2 Tax=Desulfovibrio RepID=B8DP41_DESVM Length = 205 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 21/186 (11%) Query: 10 YRLSREISLRA-EEMEKQLASMAFTPCGSQ-DMAKMGWVPPMGSHSDAL-------THVA 60 +R++ + + +L F + D GWV D L Sbjct: 13 FRIADPVPATLWPTLPDKLKQFCFRDIDNTSDERSWGWVC----FDDMLDTAWRTAPPEK 68 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEA---EQARK-LKKTEKDSLKDEVLHSLL 116 G I R++ + +P+ V+K+ L + + EA EQ +K + + K LK++ L+ Sbjct: 69 GGYIAFSLRQDTRRIPAAVLKKHLSLALREEEARNKEQGKKFISRERKKELKEQTRLRLM 128 Query: 117 PRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLA--LLRKSLGSLPVVPLSMENPI-- 172 R ++ + G+I +K + L L P+ P ++ + Sbjct: 129 SRFLPIPAEFNVLWAIDTGIIYFASTQSKMIDLFSDYFTLTFDLHLEPLTPYALAASMLD 188 Query: 173 ELTLTE 178 E +T Sbjct: 189 EAAMTR 194 >UniRef50_B8J039 Putative uncharacterized protein n=8 Tax=Desulfovibrionales RepID=B8J039_DESDA Length = 207 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%) Query: 10 YRLSREISLRA-EEMEKQLASMAFTPCGSQ-DMAKMGWVPPMGSHSDALT---HVANGQI 64 +R+ + ++ +L AF +M GWV + Sbjct: 13 FRILDPVPAELWPQLPDKLKQFAFRDIDDIPEMQAQGWVCFEDMLDSEWFTAPPQKGAYL 72 Query: 65 VICARKEEKILPSPVIKQALE---AKIAKLEAEQARK-LKKTEKDSLKDEVLHSLLPRAF 120 V R + + +P+ V+K+ L K EQ + + + K LK++V+ L R Sbjct: 73 VFSLRLDMRRIPAGVVKKHLAVALRDEKKRMHEQGKTFISRERKKELKEQVMLRLRARFL 132 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSL 158 S+ + T I K + + K+ Sbjct: 133 PIPSEFNVLWATDRNEIWFASTQNKMIDLFMEEFLKTF 170 >UniRef50_B8J6K2 Putative uncharacterized protein n=4 Tax=Anaeromyxobacter RepID=B8J6K2_ANAD2 Length = 236 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 5/141 (3%) Query: 23 MEKQLASMAFTPC---GSQDMAKMGWVPPM-GSHSDALTHVANGQI-VICARKEEKILPS 77 + + LA AF +D G+V +D + V G+ + R + +P+ Sbjct: 54 LARGLAKGAFEALDVERGEDDRAAGFVSAEDPGVTDFTSGVLEGEWALFGFRVDTLRVPA 113 Query: 78 PVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLI 137 ++ L+ IA E E+ R K EK + KD + H+ RA + + +G + Sbjct: 114 SAVRAELDRWIALHEKERGRPPTKGEKATQKDLIRHAHRQRAVPSSKVHDVSLHLGSGEL 173 Query: 138 MVDCASAKKAEDTLALLRKSL 158 +V AS K ++ A + +L Sbjct: 174 LVWAASRKLVDEIAAAVEGAL 194 >UniRef50_Q82WY9 Putative uncharacterized protein n=1 Tax=Nitrosomonas europaea RepID=Q82WY9_NITEU Length = 81 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 ++ + LK D R+ E ++FD+ F LMT EL L+ L+E LGG Sbjct: 24 SHILDSNLQLKWSVLLDIDREPA-----ETAEEQFDSSFFLMTEELRQLLPELMEALGGT 78 Query: 301 AQR 303 A Sbjct: 79 ASE 81 >UniRef50_C8QY58 Putative uncharacterized protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QY58_9DELT Length = 232 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 9/142 (6%) Query: 24 EKQLASMAFTPCGSQ-DMAKMGWVPPMGSHSDALT---HVANGQIVICARKEEKILPSPV 79 +++ + AF D +GWV + + + + R +E+ + + + Sbjct: 59 AQRIVAHAFRDIDDTFDEQSVGWVSLASMFDHDFSQGPYAVGDYLAMSMRVDERKVAARI 118 Query: 80 IKQAL---EAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGL 136 +K+ E ++ K+ KL + +K +KD + LL ++F + M + G Sbjct: 119 LKKFCLKEEERLKKMHQVP--KLSRAQKIEIKDNMHLMLLKKSFPAPAVYDMCWNLAEGT 176 Query: 137 IMVDCASAKKAEDTLALLRKSL 158 I+ + K E L R + Sbjct: 177 ILFFSGNQKAQETFEELFRNTF 198 >UniRef50_Q6AQD2 Putative uncharacterized protein n=2 Tax=Deltaproteobacteria RepID=Q6AQD2_DESPS Length = 215 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 75/203 (36%), Gaps = 20/203 (9%) Query: 3 WFK------NLMVYRLSREISLRAEEME---KQLASMAFTPCGSQ-DMAKMGWVPP---M 49 WF + R S E L ++ ++ S AF D +GWV Sbjct: 12 WFSMGLLKGSASFVRFSVEGDLPENPLDFVADRVMSFAFRDIDDTYDEYSIGWVSINNMF 71 Query: 50 GSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAE-QARKLKKTEKDSLK 108 + +++ + + R +E+ + ++K+ ++ + +++ E Q K+ + K +K Sbjct: 72 DAKFKFASYIVGDYVTLTLRIDERRVSPAILKKCIQKEEERIKEEKQIPKIGRAMKVEIK 131 Query: 109 DEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 + + LL ++ S + N ++ + K ++S G L + Sbjct: 132 ERIRSELLRKSVPIPSIFDVCWGMSNSTLLFFSTNKKMQAVLEDFFKESFG------LMI 185 Query: 169 ENPIELTLTEWVRSGSAAQGFQL 191 + I + E + S +L Sbjct: 186 KQQIPYVVAESLISEENQANLEL 208 >UniRef50_C5S050 Putative uncharacterized protein n=1 Tax=Actinobacillus minor NM305 RepID=C5S050_9PAST Length = 47 Score = 41.3 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 27/40 (67%) Query: 258 ELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 + ++N+D+ +ED+ QRFDADFIL+ EL+ L + L Sbjct: 8 YITERNDDVLKEDYQQRFDADFILIVEELSQLFELLAAEF 47 >UniRef50_C6A1F2 NusG transcription antitermination protein n=8 Tax=Thermococcaceae RepID=C6A1F2_THESM Length = 155 Score = 40.2 bits (93), Expect = 0.089, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 118 RAFSRFSQTMMWIDT--VNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELT 175 +A + M + V G I V+ ++ + +R + G+LP +E Sbjct: 29 KAKTYSLPIMAILSPSKVRGYIFVEATEKAAVDEVIRGIRHAKGTLPGPISFIEIE---- 84 Query: 176 LTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHI 223 ++ A GF+ D EL + G + + D + +EI + Sbjct: 85 --HFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 130 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5EWS4 Recombination-associated protein rdgC n=185 Tax=... 399 e-110 UniRef50_A7MT92 Recombination-associated protein rdgC n=51 Tax=V... 393 e-108 UniRef50_A0YFL6 Recombination-associated protein RdgC n=1 Tax=ma... 390 e-107 UniRef50_A1SWV9 Recombination-associated protein rdgC n=4 Tax=Ga... 388 e-106 UniRef50_Q21NJ1 Recombination-associated protein rdgC n=1 Tax=Sa... 388 e-106 UniRef50_B3PBT6 Recombinaison associated protein n=2 Tax=Gammapr... 385 e-105 UniRef50_A3JCB9 Recombination-associated protein RdgC n=3 Tax=Ma... 383 e-105 UniRef50_Q60AJ9 Recombination-associated protein RdgC n=1 Tax=Me... 379 e-104 UniRef50_C4ZKX6 Putative exonuclease RdgC n=1 Tax=Thauera sp. MZ... 376 e-103 UniRef50_B0KTR8 Recombination-associated protein rdgC n=24 Tax=r... 366 e-100 UniRef50_Q2BMW7 Putative uncharacterized protein n=1 Tax=Neptuni... 366 e-100 UniRef50_A4A8V5 Recombination-associated protein RdgC n=3 Tax=un... 365 1e-99 UniRef50_Q478Z5 Recombination-associated protein rdgC n=3 Tax=Rh... 363 4e-99 UniRef50_A7BMB4 Recombination associated protein RdgC n=2 Tax=Be... 362 1e-98 UniRef50_B5JTM5 Recombination associated protein n=1 Tax=gamma p... 361 2e-98 UniRef50_C4K8J6 Recombination-associated protein rdgC n=1 Tax=Ca... 359 8e-98 UniRef50_Q486R8 Recombination-associated protein rdgC n=1 Tax=Co... 359 8e-98 UniRef50_A1WYS1 Recombination-associated protein rdgC n=4 Tax=Ec... 353 5e-96 UniRef50_A3QGL9 Recombination-associated protein rdgC n=2 Tax=Ga... 352 9e-96 UniRef50_C9YCI4 Recombination-associated protein rdgC n=5 Tax=Co... 351 1e-95 UniRef50_Q2SCW6 DNA recombination-dependent growth factor C n=1 ... 351 2e-95 UniRef50_Q0F2D9 Recombination associated protein n=1 Tax=Maripro... 350 4e-95 UniRef50_A5UGC4 Recombination-associated protein rdgC n=48 Tax=G... 346 4e-94 UniRef50_A4Y4Y9 Recombination-associated protein rdgC n=26 Tax=G... 344 2e-93 UniRef50_C5S756 Putative exonuclease RdgC n=1 Tax=Allochromatium... 344 3e-93 UniRef50_A4JTE0 Putative exonuclease, RdgC n=1 Tax=Burkholderia ... 341 1e-92 UniRef50_A0Z347 Recombination associated protein n=2 Tax=unclass... 341 1e-92 UniRef50_Q8H9Q5 ORF10 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q5_9CAUD 340 4e-92 UniRef50_Q15X11 Recombination-associated protein rdgC n=4 Tax=Al... 338 1e-91 UniRef50_Q8L2C7 DNA recombination protein n=2 Tax=Enterobacteria... 335 1e-90 UniRef50_B1K4Q5 Recombination-associated protein rdgC n=44 Tax=B... 331 2e-89 UniRef50_C6MGX0 Putative exonuclease RdgC n=1 Tax=Nitrosomonas s... 331 2e-89 UniRef50_A2SN77 DNA recombination-dependent growth factor n=1 Ta... 331 2e-89 UniRef50_A3WJE4 DNA recombination-dependent growth factor C n=2 ... 329 9e-89 UniRef50_Q3II43 Recombination-associated protein rdgC n=3 Tax=Al... 327 3e-88 UniRef50_A3EHV2 Recombination-associated protein RdgC n=2 Tax=Vi... 327 3e-88 UniRef50_A6GUC5 Recombination associated protein n=5 Tax=Betapro... 322 7e-87 UniRef50_O87408 Recombination-associated protein rdgC n=29 Tax=N... 322 1e-86 UniRef50_C0DWI1 Putative uncharacterized protein n=1 Tax=Eikenel... 320 3e-86 UniRef50_Q0VLT7 Recombination associated protein rdgC n=2 Tax=Al... 311 3e-83 UniRef50_A3Y751 Recombination-associated protein RdgC n=2 Tax=Ma... 308 2e-82 UniRef50_B5AX95 Putative exonuclease RdgC n=1 Tax=Iodobacterioph... 307 4e-82 UniRef50_C7RD57 Putative exonuclease RdgC n=1 Tax=Kangiella kore... 306 5e-82 UniRef50_A2SM13 DNA recombination-dependent growth factor n=19 T... 306 6e-82 UniRef50_C4GKZ6 Putative uncharacterized protein n=2 Tax=Neisser... 304 2e-81 UniRef50_A4JWD6 Putative exonuclease, RdgC n=1 Tax=Burkholderia ... 304 3e-81 UniRef50_B2I7H2 Recombination-associated protein rdgC n=24 Tax=X... 299 6e-80 UniRef50_Q1QVI8 Putative exonuclease, RdgC n=1 Tax=Chromohalobac... 299 1e-79 UniRef50_Q1N0M2 Recombination associated protein n=1 Tax=Bermane... 298 1e-79 UniRef50_A1VR42 Putative exonuclease, RdgC n=1 Tax=Polaromonas n... 291 2e-77 UniRef50_A4BHD8 Recombination-associated protein RdgC n=1 Tax=Re... 286 5e-76 UniRef50_Q5ZW99 Exonuclease involved in removal of stalled repli... 265 2e-69 UniRef50_D0ZDE3 Recombination-associated protein RdgC n=1 Tax=Ed... 259 1e-67 UniRef50_Q5NWY5 Predicted DNA recombination-dependent growth fac... 252 1e-65 UniRef50_D0KZJ6 Putative exonuclease RdgC n=1 Tax=Halothiobacill... 243 5e-63 UniRef50_B0U148 Recombination associated protein n=19 Tax=Franci... 231 2e-59 UniRef50_D1RMX8 Putative exonuclease n=1 Tax=Legionella longbeac... 209 1e-52 UniRef50_A8TCH0 Recombination associated protein (Fragment) n=1 ... 200 6e-50 UniRef50_A3JHF7 Recombination associated protein n=1 Tax=Marinob... 190 5e-47 UniRef50_B7MW52 Putative uncharacterized protein n=2 Tax=Escheri... 188 2e-46 UniRef50_A1U7Y4 DNA recombination-dependent growth factor C-like... 186 9e-46 UniRef50_Q7Y3W9 Recombination associated protein n=1 Tax=Yersini... 167 4e-40 UniRef50_D2K0C7 Recombination-associated protein n=1 Tax=Staphyl... 158 2e-37 UniRef50_B6XBN9 Putative uncharacterized protein n=1 Tax=Provide... 156 6e-37 UniRef50_A0LPT8 Conserved hypothetical cytosolic protein n=1 Tax... 155 2e-36 UniRef50_D2L6Z2 Putative uncharacterized protein n=1 Tax=Desulfo... 140 4e-32 UniRef50_Q2LSX3 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 135 2e-30 UniRef50_C7LXS9 Putative uncharacterized protein n=5 Tax=Desulfo... 125 2e-27 UniRef50_B8DP41 Putative uncharacterized protein n=2 Tax=Desulfo... 123 8e-27 UniRef50_B5E9U0 Putative uncharacterized protein n=8 Tax=Desulfu... 123 1e-26 UniRef50_A6DPQ5 Hypothetical cytosolic protein n=1 Tax=Lentispha... 119 1e-25 UniRef50_C0GT68 Putative uncharacterized protein n=1 Tax=Desulfo... 118 2e-25 UniRef50_B8J039 Putative uncharacterized protein n=8 Tax=Desulfo... 116 1e-24 UniRef50_B8FCC1 Putative uncharacterized protein n=1 Tax=Desulfa... 114 3e-24 UniRef50_A1AT82 Putative uncharacterized protein n=2 Tax=Desulfu... 114 5e-24 UniRef50_D1N7T1 Putative uncharacterized protein n=3 Tax=Bacteri... 113 6e-24 UniRef50_A8ZU01 Conserved hypothetical cytosolic protein n=1 Tax... 112 1e-23 UniRef50_C0QIP8 Putative uncharacterized protein n=1 Tax=Desulfo... 111 3e-23 UniRef50_C8QY58 Putative uncharacterized protein n=1 Tax=Desulfu... 106 1e-21 UniRef50_Q1D7N9 Putative uncharacterized protein n=2 Tax=Cystoba... 104 3e-21 UniRef50_B8J6K2 Putative uncharacterized protein n=4 Tax=Anaerom... 96 1e-18 UniRef50_B7WYI4 DNA recombination-dependent growth factor C-like... 84 6e-15 UniRef50_D0J5F2 Putative exonuclease, RdgC n=1 Tax=Comamonas tes... 84 7e-15 UniRef50_Q7WXD3 Putative uncharacterized protein n=1 Tax=Ralston... 82 2e-14 UniRef50_UPI000045D917 COG2974: DNA recombination-dependent grow... 72 2e-11 UniRef50_Q82WY9 Putative uncharacterized protein n=1 Tax=Nitroso... 62 2e-08 UniRef50_UPI0001698F3A hypothetical protein Epers_24033 n=1 Tax=... 60 1e-07 Sequences not found previously or not previously below threshold: UniRef50_Q6AQD2 Putative uncharacterized protein n=2 Tax=Deltapr... 95 3e-18 UniRef50_D0LSM5 Putative uncharacterized protein n=1 Tax=Haliang... 77 8e-13 UniRef50_A9EY34 Putative uncharacterized protein n=1 Tax=Sorangi... 68 3e-10 UniRef50_UPI00016C5061 hypothetical protein GobsU_21695 n=2 Tax=... 63 1e-08 UniRef50_A4NCR8 Putative uncharacterized protein n=2 Tax=Haemoph... 46 0.001 UniRef50_C6A1F2 NusG transcription antitermination protein n=8 T... 43 0.011 UniRef50_C5S050 Putative uncharacterized protein n=1 Tax=Actinob... 42 0.029 UniRef50_C5Z903 Putative uncharacterized protein Sb10g010770 n=1... 41 0.043 >UniRef50_B5EWS4 Recombination-associated protein rdgC n=185 Tax=root RepID=RDGC_SALA4 Length = 303 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 282/303 (93%), Positives = 295/303 (97%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 MLWFKNLMVYRLSR+I+LRAEEMEKQLASM FTPCGSQDMAKMGWVPPMGSHSDALTH A Sbjct: 1 MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTA 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 NGQI+ICARKEEKILPSPVIKQALEAKI KLEA+Q RKLKKTEKDSLKDEVLHSLLPRAF Sbjct: 61 NGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPL++ENPIELTLTEWV Sbjct: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 RSG+ AQGFQLLDEAELK++LEDGGVIRAKKQDL S+EI HIEAGKVVTKLALDWQQRI Sbjct: 181 RSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 QFVMCDDGS+KRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQ+L+EGLGGE Sbjct: 241 QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE 300 Query: 301 AQR 303 AQR Sbjct: 301 AQR 303 >UniRef50_A7MT92 Recombination-associated protein rdgC n=51 Tax=Vibrionales RepID=RDGC_VIBHB Length = 304 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 180/298 (60%), Positives = 229/298 (76%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN +VYR++RE++ A+++E QLA FTPCGSQD K GWV MG + D +THV+ Sbjct: 1 MWFKNCLVYRVNREVNFNADQLETQLAEFRFTPCGSQDKQKFGWVSAMGRNGDMMTHVSE 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 +I+ICA+KEEK+LP+ VIK +L AK+ +EA++ R LKK EKD+LKD+++ LLPRAFS Sbjct: 61 NRILICAKKEEKMLPASVIKDSLNAKVEAMEAQEGRPLKKKEKDNLKDDIVMDLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S T + I G I+VD +S KKAED LALLRK++GSLPVVP E IE TLTEWV+ Sbjct: 121 RSSHTYVLIMPKEGFILVDASSYKKAEDVLALLRKTMGSLPVVPAIPEVAIETTLTEWVK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +G QG ++DEAELKS+LE+GGVIR KKQ+LT++EI NHI A KVVTKLAL+WQ RI+ Sbjct: 181 TGDTPQGISMMDEAELKSVLEEGGVIRCKKQELTTDEIRNHIAADKVVTKLALNWQDRIE 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 F+M +D +KRLKF DEL+DQN+DI RED A RFDADF LM GE +A + NL E LGG Sbjct: 241 FIMAEDSGIKRLKFSDELKDQNDDIPREDQAARFDADFSLMCGEFSAFLPNLYETLGG 298 >UniRef50_A0YFL6 Recombination-associated protein RdgC n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFL6_9GAMM Length = 307 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 124/299 (41%), Positives = 195/299 (65%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYR ++ + EE+ + L + F PCGSQD+++ GWVPP+G H H AN Sbjct: 1 MWFKNLQVYRFTKPFDMTPEELSEALQTKEFQPCGSQDLSRYGWVPPLGHHGTDFVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++CA+K++K+LP+ VI + + KI ++A + R + + E+ +LKD+V LLPRA Sbjct: 61 GFVMVCAKKQDKLLPAAVINEMVGEKIVDIQANEGRAVGRKERQNLKDDVTFELLPRALV 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +I GL++V+ +S+K+AE+ ++ LR+++GS+PV+P+ N + T+T+W+ Sbjct: 121 KSSLQFAFIAVQQGLLIVNASSSKRAEELISFLRETIGSVPVIPVVANNIPQHTMTQWLL 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 SG Q F+ E EL+ ++GGVIR K Q+LTS EI +HI+AG V+KL L W I Sbjct: 181 SGQPPQAFEFGHECELRDPSDEGGVIRCKHQELTSAEIASHIKAGMYVSKLGLCWNGGID 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D ++KRL F + ++++ +D D A +FD DF +MT EL ALI L + GGE Sbjct: 241 FMVDDQLAVKRLGFGEIIQEKANQLDAVDAAAQFDQDFAVMTLELVALIGALTDVFGGE 299 >UniRef50_A1SWV9 Recombination-associated protein rdgC n=4 Tax=Gammaproteobacteria RepID=RDGC_PSYIN Length = 302 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 156/299 (52%), Positives = 214/299 (71%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++FKNL VYR +R + + +E+ L F PCGSQD++K+GWV PMG TH+A Sbjct: 1 MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAG 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 QI+IC +KEEK+LP+ VIK L ++ +E EQ R LKK EKDSLK+E++ LLPRAFS Sbjct: 61 KQILICLKKEEKMLPAGVIKDQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQT WID+ + ++ VD +S +KAE+ ++LLRK+LGSLP+VP+ ++N ++ +T+W+ Sbjct: 121 RTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSLPIVPIQLKNQADVIMTDWLT 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ F L DEAEL S LE GG+IR K+QDL S+EI NH+ A K VTKLAL W I Sbjct: 181 EGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ ++ +LKR+KF D L++QNEDID++DFA RFDADF LMTGE+ LI ++ GGE Sbjct: 241 FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGE 299 >UniRef50_Q21NJ1 Recombination-associated protein rdgC n=1 Tax=Saccharophagus degradans 2-40 RepID=RDGC_SACD2 Length = 305 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 119/298 (39%), Positives = 198/298 (66%), Gaps = 1/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL++ E++ LA F PCG D + GWVPP+G H H AN Sbjct: 1 MWFKNLRIYRLTQPFEHSPEQLHDLLAPFEFQPCGKLDPQRGGWVPPLGRHGSEFVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++ ++EEKILPS V+K LE K+A++ ++AR + + E+++LKDE++ +LLP+AF+ Sbjct: 61 GYIMVAFKQEEKILPSAVVKDHLEQKVAEISEQEARHVSRKERETLKDEIIFTLLPKAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + + +IDT L++V+ +SAK+AED +A LR+++GS P VPL+ P +T W+R Sbjct: 121 KSNICFAYIDTNEKLLVVNASSAKRAEDLMAALREAVGSFPCVPLNPTQPPPSVMTSWLR 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + + G +L +E EL + +DG +IR K QDLT++E+ +HI G VV K+A+ W++ +Q Sbjct: 181 DNTISAGLELGEECELTAP-KDGRIIRCKNQDLTADEVLSHINTGMVVNKIAVIWKEGVQ 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 ++ D + KRLKF + ++++ + + + A+ FD +F +MT EL+ +I++L++ GG Sbjct: 240 LIIDDQFAFKRLKFEEIIQEKAQSSNADSMAEEFDQEFAIMTVELSQMIKDLVKAFGG 297 >UniRef50_B3PBT6 Recombinaison associated protein n=2 Tax=Gammaproteobacteria RepID=B3PBT6_CELJU Length = 316 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 130/301 (43%), Positives = 198/301 (65%), Gaps = 1/301 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL+ + +L EE+ +LA F PCGS D + G+ PP+G H +N Sbjct: 15 MWFKNLRLYRLTDDWTLSPEELNDKLAPFCFNPCGSLDPLRYGFEPPLGREGTQYVHASN 74 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ICA+K+EKILPS VIK+ LE K+A + ++R + + E+D LKDE++ SLLPRAF+ Sbjct: 75 GYMMICAKKQEKILPSGVIKEQLEEKVAAIREAESRPVGRKERDGLKDEIIFSLLPRAFT 134 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +I LI+V+ +SAK+AED L+ LR++LGSL +P+S ++ +T+W+R Sbjct: 135 KSSLDYAYIALQEKLIVVNSSSAKRAEDLLSKLREALGSLRCMPISPKHLPTQVMTQWLR 194 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 A F L +E EL++ +DG V+R KK DLT+ EI +H+++G V+K+AL W++ I Sbjct: 195 DSEAPHQFALGEEVELQAT-KDGRVVRCKKLDLTASEIRSHLDSGMHVSKIALCWKESIH 253 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 ++ D +KRLKF D + ++ D + E A++FDADF +MT EL I L+ GGEA Sbjct: 254 CILDDQLGVKRLKFEDVVSEKANDRNPETKAEQFDADFAIMTLELKNFITALLAAFGGEA 313 Query: 302 Q 302 + Sbjct: 314 E 314 >UniRef50_A3JCB9 Recombination-associated protein RdgC n=3 Tax=Marinobacter RepID=A3JCB9_9ALTE Length = 317 Score = 383 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 128/302 (42%), Positives = 198/302 (65%), Gaps = 1/302 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N V+R ++ + +E+E++L + F PCG Q+ + GWV P+G H + L H AN Sbjct: 1 MWFRNARVFRFTKPFDITTDELEEKLQADTFKPCGPQETTRQGWVAPLGKHGETLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +I R+E+KILPS VIK+ +E + +E +Q RK+++ EKD LK++V+ +LP+AFS Sbjct: 61 GYHLIALRREDKILPSSVIKELMEERAEAIEIDQGRKVRRKEKDELKEQVMLEMLPQAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + ++ ++ +G+++VD SAK+AE+ + LRKS+GSLPV P ++E T T W+ Sbjct: 121 KNRRSFAYLAPKDGVMVVDAGSAKQAEEIASALRKSIGSLPVRPPAVEQAPIFTFTGWLD 180 Query: 182 SG-SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +L DE ELK EDGGV+R K +L ++EI NH++AG VTKLA+ W + Sbjct: 181 ESIDLPAQIELGDECELKDPAEDGGVVRCKGMNLQADEIQNHLQAGMQVTKLAITWDDNV 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ ++ ++RLKF + L++Q E++D +D +FDA F LMT ELA LI L+E LGGE Sbjct: 241 SFVLDEELGIRRLKFGETLQEQLENVDADDALAKFDASFSLMTLELAKLIPGLLEALGGE 300 Query: 301 AQ 302 + Sbjct: 301 DR 302 >UniRef50_Q60AJ9 Recombination-associated protein RdgC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ9_METCA Length = 310 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 127/302 (42%), Positives = 194/302 (64%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL++YR + +L AE +E L + F PCGS ++A GW PP+ L H AN Sbjct: 1 MWFKNLVLYRFTEACTLTAERLEYALVARRFAPCGSMELAAAGWHPPLRRDDLPLVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++ KEEKILP+ V+ +ALE + ++EA + + + E+ L+DEV +SLLPRAFS Sbjct: 61 GYLMVSLLKEEKILPASVVNEALEERAEEIEARRGTPVGRKERRDLRDEVFNSLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +T ++D G ++VD AS KKAE+ ++LLR++LGSLPV P++ + +T W+ Sbjct: 121 HTRRTYAYVDPRGGWLVVDSASVKKAEELVSLLRQTLGSLPVAPVATQGRPPAVMTTWLL 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + DE EL+S E+GG++R ++QDL++ EI NHI+AGK V +LA+ W R+ Sbjct: 181 EQDLPPDLVIEDECELRSPEEEGGIVRCRRQDLSAPEIRNHIDAGKEVVRLAVSWNDRLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 F + D +K+L+F D +++Q +ID D +RFDADF +MT EL+ + L+E GGEA Sbjct: 241 FTLDDALGIKKLRFLDVIQEQAAEIDAADEVERFDADFAIMTLELSQFLARLVELFGGEA 300 Query: 302 QR 303 + Sbjct: 301 VQ 302 >UniRef50_C4ZKX6 Putative exonuclease RdgC n=1 Tax=Thauera sp. MZ1T RepID=C4ZKX6_THASP Length = 331 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 2/299 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYRL + AE +E+QLA F PCGSQDM GW+ P+G+ + L H Sbjct: 1 MWFKNLQVYRLPANWDMSAERLEEQLAKKPFHPCGSQDMESRGWLSPLGN--EVLVHAVG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 GQ ++C E ++LPS V+KQ + + +L +Q KL + + L+++V L+PRAF+ Sbjct: 59 GQWLVCLGFEHRLLPSAVVKQEADERAEELAEQQGYKLGRKQLKELREQVTQELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + WID +NG ++VD AS KAED L LR +L S P+ L E + +W+ Sbjct: 119 RRRRMFAWIDPINGWLVVDAASQSKAEDMLEQLRHTLDSFPLTLLRTERSPMSAMADWLA 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G A GF + + EL+S+ ED +R + L +++ H+EAGK+ T+LAL + RI Sbjct: 179 GGEAPDGFTIDQDCELRSVAEDKAAVRYARHPLEGDDVKGHLEAGKLPTRLALTFDDRIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ + +KRL F D +RDQ + D++D F+A+F LMTGELA L+ ++ LGGE Sbjct: 239 FVLTEKLEIKRLDFLDIVRDQVGEADKDDAEALFNAEFALMTGELAHLLPAVVAALGGE 297 >UniRef50_B0KTR8 Recombination-associated protein rdgC n=24 Tax=root RepID=RDGC_PSEPG Length = 306 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 140/300 (46%), Positives = 198/300 (66%), Gaps = 1/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSD-ALTHVA 60 +WFKNL+ YRL++E+ E +E LAS PC SQ++ G+V P G D L HV+ Sbjct: 1 MWFKNLLTYRLTQEVPFEPEALEAALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVS 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 ++I ARKEE+ILPS V+ A++ K+ ++E EQ RK+ K E+D +KDE++ + LPRAF Sbjct: 61 GEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 R S I G+I+V+ ASAK+AED L+ LR+ +GSLPV P +++ T+T+WV Sbjct: 121 IRRSMIFAAIAPRLGVILVNSASAKRAEDLLSTLREVMGSLPVRPATVKVAPVATMTDWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +S AA+GF +LDE EL+ EDGG++R K+QDLT EEI H+ GKVVT+LAL WQ ++ Sbjct: 181 KSQQAAEGFHVLDECELRDTAEDGGIVRCKRQDLTGEEIQLHLSTGKVVTQLALAWQDKL 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D +KRLKF + L++Q E ++ AQ+FDA F LM A + L E LGGE Sbjct: 241 SFILDDKMVIKRLKFEELLQEQAEQDGGDEAAQQFDASFQLMMMTFAEFLPVLFEALGGE 300 >UniRef50_Q2BMW7 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMW7_9GAMM Length = 304 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 133/303 (43%), Positives = 194/303 (64%), Gaps = 1/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN++ YRL+ E+++++L AFTPC SQ++++ GWV P + H + Sbjct: 1 MWFKNVIFYRLNEAFEYSQEQLQEKLKEQAFTPCKSQELSRYGWVSPCQQLDEMYAHQVH 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ ARKEEKILP VIK+A+ K+A++E EQARK+ K E+D LKDEV+ LLPRAFS Sbjct: 61 GMFMLAARKEEKILPGAVIKEAVGDKVARIENEQARKVYKKERDQLKDEVILDLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 +F QT I G I VD +S K+AE+ L+ LR +LGSLP+ ++ ++ W+ Sbjct: 121 KFQQTYALIAPAQGWIAVDASSHKRAEELLSHLRGTLGSLPIALPDVQQSPSAVMSNWLE 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + S QGF++ DE EL+ + +GGVIR K Q L EE H+EAGK V KLAL+W +++ Sbjct: 181 HNDSLPQGFEVQDECELRDNVLEGGVIRIKGQQLEDEEFIAHLEAGKRVVKLALEWDEQL 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 +F++ +D ++KRLK ++L+++ D ED +FD D + M E A L LI GGE Sbjct: 241 RFMLQEDLAIKRLKLSEQLQEKMADEAAEDEVAQFDVDMVQMGLEFAKLYPALIAAFGGE 300 Query: 301 AQR 303 AQR Sbjct: 301 AQR 303 >UniRef50_A4A8V5 Recombination-associated protein RdgC n=3 Tax=unclassified Gammaproteobacteria RepID=A4A8V5_9GAMM Length = 302 Score = 365 bits (937), Expect = 1e-99, Method: Composition-based stats. Identities = 120/301 (39%), Positives = 182/301 (60%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL YR++R + AE++E +LA F PC +GWVP +G ++ L H A+ Sbjct: 1 MWFKNLRAYRMTRGLEFSAEQLEDKLAGRGFKPCTPAQPLSVGWVPALGEGAEMLVHAAD 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G++++C R+EEKILP V++ ++ ++ +EA+Q RK+ + EK SLKDEV +PRAFS Sbjct: 61 GRMMLCLRREEKILPPSVVRDLVKERVEAIEAQQGRKVYRKEKLSLKDEVTQDCMPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R ++ + ID ++VD ASA +AE+ L LLR+ +GS PV+ + +T W+ Sbjct: 121 RHAELRLIIDPQARWVLVDSASASRAEEALNLLRECVGSFPVLLPQTAHAPAAAMTSWLA 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + S + Q +E EL+ + E VIR K DL S+E+ H++ V +LAL WQ+++Q Sbjct: 181 NSSLPEDLQAREECELRDMGEQAAVIRCKGLDLYSDEVRQHLQGTTQVVRLALGWQEQLQ 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 FV+ DD L+R+KF D L +N+++ ED R DADF LM L + LI GGE Sbjct: 241 FVLGDDLCLRRIKFSDALVKENDELMDEDRLARLDADFALMAPTLTTIQDRLISLFGGED 300 Query: 302 Q 302 Sbjct: 301 N 301 >UniRef50_Q478Z5 Recombination-associated protein rdgC n=3 Tax=Rhodocyclaceae RepID=RDGC_DECAR Length = 304 Score = 363 bits (932), Expect = 4e-99, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 6/305 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YRL ++ + ++QL+ F C S GWV P AL + Sbjct: 1 MWFKNLQLYRLPTPWNIDLAKFDEQLSRGPFVKCPSNQPMSRGWVSP--RRDGALVYSLG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q +I E+++LPS V+ + ++ + +EA+Q + + L++ V L+PRAF+ Sbjct: 59 QQWMIALSVEQRLLPSSVVNEEVKERAELMEAQQGYAPGRKQLKELRERVTEELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R T +W+D NG VD S KAE+ + LR L P+ L + + + +W+ Sbjct: 119 RRRTTYVWLDPKNGWFCVDAGSPAKAEEVIEHLRHCLDDFPLTMLHTQVSPQAAMADWLA 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSE---EITNHIEAGKVVTKLALDWQQ 238 G A GF + + ELK+ E+ +R + L E EI H+ +GK+ TKLAL W Sbjct: 179 GGDAPAGFTIDRDCELKAAGEEKAAVRYVRHPLGDEISGEIKAHLASGKMPTKLALTWDD 238 Query: 239 RIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 RI FV+ + +KRL F D L+++ E E ++FDADF LMTGEL+ + L+E LG Sbjct: 239 RISFVLGEKMEIKRLAFLDLLKEEAEKS-AEHADEQFDADFALMTGELSRFLPQLVEALG 297 Query: 299 GEAQR 303 GE Sbjct: 298 GEVVE 302 >UniRef50_A7BMB4 Recombination associated protein RdgC n=2 Tax=Beggiatoa RepID=A7BMB4_9GAMM Length = 308 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 126/302 (41%), Positives = 194/302 (64%), Gaps = 3/302 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++R ++L A+++ +QL AF PCG DM MGWVPP+ S++L H N Sbjct: 1 MWFKNLHLFRFLHPVTLSADDLNEQLTESAFQPCGKMDMETMGWVPPLSRESESLVHAIN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I+ ARKEEKILP+ V+++ + K+ ++E +Q RK++K EKD +++EVLH L+PRAF+ Sbjct: 61 NCIIFTARKEEKILPASVVREFVNEKVEEIETQQMRKVRKREKDEIREEVLHDLIPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV- 180 R + +ID G +M+D S K+AE+ + LR+++GSLPVV ++ + +T+W+ Sbjct: 121 RSTYLSAYIDVTQGWLMIDTPSHKRAEELTSFLRQTVGSLPVVVPKLQQNLGNVMTQWLI 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +L D L +DG V+ K+QDL +EE+ H+ AGK V +LAL+W R+ Sbjct: 181 NQNHCPADLELADACVLTD--QDGAVVNCKRQDLLAEEMHGHLTAGKSVKRLALEWNDRL 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F++ D+ ++RL+ D ++ Q D + E QRFDADF +MT ELAALI+ L+E GGE Sbjct: 239 AFILDDELVIRRLQLLDLVQAQLNDTESETSTQRFDADFSIMTLELAALIKRLLEIFGGE 298 Query: 301 AQ 302 + Sbjct: 299 DE 300 >UniRef50_B5JTM5 Recombination associated protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTM5_9GAMM Length = 302 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 127/302 (42%), Positives = 190/302 (62%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 + F+NL +YR + E S E +E+QL++ AF C GWV P+G H + H AN Sbjct: 1 MLFRNLQLYRFTAEFSHSTEALERQLSAQAFQACAKNQTHSQGWVSPLGKHGEQRVHAAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +++C RKEE+++P+ V+++ALE K+ +E + R ++ EK +KDE+L +LPRAF+ Sbjct: 61 GYMMLCLRKEERLVPAAVLREALEEKVEAIELSEHRPVRGKEKARIKDELLLDMLPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R T +I +G ++VD +S +AE+ L+ LR+SLG LPV+PL + N T W++ Sbjct: 121 RSRYTYAYIAPSSGWLVVDSSSPARAEELLSALRESLGGLPVLPLQVRNAPHSVFTHWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G GF+L + EL + E GVI+ ++Q L +EEI HIEAGKVVTKLAL++Q R+ Sbjct: 181 QGHVEAGFELGERCELHGVQEQEGVIQIRRQSLDNEEIQVHIEAGKVVTKLALEFQNRLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 FV+ D S+K+L+F DE+ + E+ + FA FDA F MT EL AL L++ GGE Sbjct: 241 FVLDDALSVKQLRFSDEVLESLEEDSTDSFAAEFDARFARMTLELEALFPELLKAFGGEV 300 Query: 302 QR 303 + Sbjct: 301 EE 302 >UniRef50_C4K8J6 Recombination-associated protein rdgC n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=RDGC_HAMD5 Length = 302 Score = 359 bits (921), Expect = 8e-98, Method: Composition-based stats. Identities = 164/297 (55%), Positives = 228/297 (76%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M+WFKNLM+Y+L + + E+EK+LA+ AF PCG Q+ ++GW+PPM SH D L++ Sbjct: 1 MIWFKNLMMYQLQCPLEKDSSELEKKLANFAFIPCGPQEKVRVGWIPPMVSHKDTLSYQV 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 N QI++CA KEEK+LP+ VIKQ LE++I KLEA+Q RKLKKTEK SLKD V + LLPRAF Sbjct: 61 NRQILLCAHKEEKMLPASVIKQELESQIEKLEAQQKRKLKKTEKASLKDHVFYDLLPRAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 SRF +T +WIDT++ ++++D +S K+AE+ LALLR+SLGSL VVP + ++P+E LTEW+ Sbjct: 121 SRFQKTWIWIDTIHQMMILDASSTKRAEEALALLRQSLGSLAVVPFTFKHPVEFILTEWI 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 RS + GF L++EAELKS L +GG IR K Q+L S+EI HI++GK VT+LAL+WQ+ I Sbjct: 181 RSDNLPSGFVLMEEAELKSTLTEGGTIRCKNQNLYSDEIALHIKSGKKVTRLALEWQESI 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 Q ++ D SLKR+KF + LR++N I++++ AQ FDADF+LMT EL LI+N++ Sbjct: 241 QLILNQDLSLKRVKFLEVLREKNSHINKKEVAQCFDADFVLMTYELTELIKNMMSAF 297 >UniRef50_Q486R8 Recombination-associated protein rdgC n=1 Tax=Colwellia psychrerythraea 34H RepID=RDGC_COLP3 Length = 307 Score = 359 bits (921), Expect = 8e-98, Method: Composition-based stats. Identities = 133/296 (44%), Positives = 189/296 (63%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL + +R +++EK L+ FTP GS +++ GW+ +G H D H AN Sbjct: 1 MWFKNLYFFAFTRPFEWSEQDLEKHLSEHLFTPLGSTEISHFGWINALGKHGDTSVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G +ICARKEEK+LP+ VIK +E K+ LE EQ R K EK+ K+++ LLPRAFS Sbjct: 61 GNFLICARKEEKMLPASVIKDMIEEKVNLLEQEQGRGATKKEKEQFKEDITFELLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + T +I VN +I+++ +S KAED LALLRK LG+LPV L + + T+T+W+ Sbjct: 121 RITDTHAYISPVNNIIVINSSSRGKAEDLLALLRKVLGTLPVSSLEPDVCADETMTDWLN 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F L EAE +L +DG V+R K QDL SEEI +H++A K V K+AL+W + + Sbjct: 181 EKSLGGKFTLGMEAEFNALGDDGAVVRVKNQDLLSEEIKSHLDADKYVVKVALEWDESLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 F++CDD ++KR+KF D + +QN+DID +D + DADF LM+GEL I L+ Sbjct: 241 FILCDDLAIKRVKFFDVIHEQNDDIDSDDVIAKLDADFALMSGELNRFIIELLAEF 296 >UniRef50_A1WYS1 Recombination-associated protein rdgC n=4 Tax=Ectothiorhodospiraceae RepID=RDGC_HALHL Length = 302 Score = 353 bits (906), Expect = 5e-96, Method: Composition-based stats. Identities = 123/299 (41%), Positives = 192/299 (64%), Gaps = 1/299 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL+ YRL +++ E +++LA++AFTPCG+ + ++ G+VPP+G L H A Sbjct: 1 MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGP-GAPLVHAAA 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ C ++E K+LP+ VI++A++ +I +EA + RK++K E+D ++DEV+ L+PRAFS Sbjct: 60 GSLLFCLQEETKLLPAAVIREAMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +T ++DT G ++VD S K+AE + LR++ G L + P E +T W+ Sbjct: 120 RHKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLTLSPPETEMGPGTIMTRWLA 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +L +EA L+ +G +R K+QDLTSEE+ HI+AGK V +LA+ + +R+ Sbjct: 180 QQQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLS 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 V+ D SL+RLKF D +R+Q D D E A++ DADF LMT EL LI L+E GGE Sbjct: 240 AVIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGE 298 >UniRef50_A3QGL9 Recombination-associated protein rdgC n=2 Tax=Gammaproteobacteria RepID=RDGC_SHELP Length = 303 Score = 352 bits (904), Expect = 9e-96, Method: Composition-based stats. Identities = 156/298 (52%), Positives = 207/298 (69%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL VYR ++ S+ E +EK L F+PC SQD++K G+ +G L H A Sbjct: 1 MWFKNLTVYRFNKPFSVDTEALEKSLEDFTFSPCSSQDISKFGFSKALGKLGHTLVHSAE 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +ICA KEEKILPS V+K+ALE K+A++EAE+ RKL K EKD+LK+E+ +LLPRAFS Sbjct: 61 NRHLICATKEEKILPSQVVKEALEEKVAQIEAEENRKLAKKEKDALKEEITTTLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQ I +I+VD +SA KAE+ LALLRK+LGSLPV+P+S + PIE LTEW++ Sbjct: 121 RRSQIHALILPEIEMILVDSSSATKAEELLALLRKALGSLPVIPMSFKTPIEAQLTEWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S SA F++ DEAELKS ++GG++R K+QDLT E+ H+E GK V KLAL + Q I Sbjct: 181 SNSAPAPFEMQDEAELKSDSDEGGIVRFKQQDLTENEVLAHLEVGKQVHKLALHFGQSIA 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D +KRLKF +E R N+++ ED R DADF LM EL AL+ +L+E LGG Sbjct: 241 FVLQSDAGIKRLKFSEEFRAHNDEVSTEDPLARLDADFALMGSELIALMNSLVEVLGG 298 >UniRef50_C9YCI4 Recombination-associated protein rdgC n=5 Tax=Comamonadaceae RepID=C9YCI4_9BURK Length = 309 Score = 351 bits (902), Expect = 1e-95, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 158/298 (53%) Query: 3 WFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANG 62 FKN++VYRL S+ ++E L + F CG+ +GW P G L V G Sbjct: 1 MFKNVIVYRLVSPWSVTQAQLEDALQADRFVECGASQEKSVGWTEPRGQAHGPLVEVVGG 60 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122 Q V+ E K +P V+K+ +E ++A++E RK K E L+D+ +LLP AF++ Sbjct: 61 QWVLKLMMEVKSVPGSVVKRKVEEQVAQIEVSTGRKPGKKEVRELRDDARLALLPMAFTK 120 Query: 123 FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRS 182 +WID +G +++D S KA++ + L K++ V ++ + + W+ + Sbjct: 121 QGSVGVWIDPKSGWLVLDAGSQGKADEVMTALIKAIPDFAVQLVNTQISPAAAMAVWLST 180 Query: 183 GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 + F + E ELK+ E V+R + L +EE++ HI GK+ T+LA+ W R+ F Sbjct: 181 RESPTDFSVDRECELKASDESKAVVRYTRHPLDTEEVSQHIALGKMPTRLAMTWNDRVSF 240 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 V+ + LK++ F D + ++ + FDAD I+ TGEL+ LI +L+E LGGE Sbjct: 241 VLTEALQLKKVTFLDTVFEEASKAAGDGKDDNFDADVIISTGELSQLIPDLMEALGGE 298 >UniRef50_Q2SCW6 DNA recombination-dependent growth factor C n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCW6_HAHCH Length = 307 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 112/299 (37%), Positives = 185/299 (61%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 + FKN ++YR ++ + E++E L+ AFTPC + D ++GWVP SDAL + Sbjct: 1 MLFKNALIYRFTKPVPWPLEDLETGLSEHAFTPCQANDTYRLGWVPAAPLVSDALVYQQG 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 +++ ++EEKILP+ VIK+ +E + ++E + RKL+K EK+ LK++V+ LLP+AF Sbjct: 61 RYLLLTLKREEKILPASVIKEEVEERAQEIEEREQRKLRKKEKNELKEQVITVLLPQAFK 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +ID GL++VD +S +A++ + LR+S+G+LP+ +++ + ++WV+ Sbjct: 121 RSRLMSAYIDLDKGLLVVDTSSGTRADEFTSFLRQSMGTLPIRFVALNEAPAVHFSDWVQ 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F D EL+S VIR K + ++ I+ HIE G VT+L+L+W +++ Sbjct: 181 KDSTPTPFVSGDNCELRSGDGSDTVIRCKGTESLTDAISTHIENGMQVTQLSLEWDEKLS 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F + DD +KR+KF D L++Q +D D + A+RF ADF LMT E + + +LI+ LGGE Sbjct: 241 FAVGDDLKIKRIKFMDTLQEQLKDGDTGEAAERFAADFSLMTLEFSRMTDDLIKVLGGE 299 >UniRef50_Q0F2D9 Recombination associated protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2D9_9PROT Length = 298 Score = 350 bits (898), Expect = 4e-95, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 171/299 (57%), Gaps = 3/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N+ YR L E++ +QL+ PCG +MA GW P+G + L H Sbjct: 1 MWFRNIQFYRFEEPFKLTGEQLHEQLSKRQSRPCGQMEMASNGWSAPLGKNGTMLVHETA 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ C R+E+K+LP+ ++++ ++A+I ++E R + EK ++D+VL LLPRAF Sbjct: 61 GNLMFCLRREDKVLPASLVRELVDAQIFEIEQA-GRTPGRKEKGEIRDQVLAELLPRAFV 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S T I +G ++++ +SA+KA++ + L K+L +LPVV S E E +T W+ Sbjct: 120 RASHTFACILPASGWLVINASSARKADEVIEALNKTLTTLPVVMPSTEQSPEAAMTGWLM 179 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 GS + F +E EL V+R + D+ S+E+ H+ G TKLAL+W++RI Sbjct: 180 RAGSLPEDFTFGEECELHDAA-SSAVVRCRNVDVMSDEVRAHVTEGLTATKLALNWRERI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ +D S+KR+KF + D+ D +D RFDADF +M E + I L+ + G Sbjct: 239 SFVLSEDLSVKRMKFDTAIVDEAGDQGGDDEVARFDADFAMMAAEFSEFIPQLLTAVDG 297 >UniRef50_A5UGC4 Recombination-associated protein rdgC n=48 Tax=Gammaproteobacteria RepID=RDGC_HAEIG Length = 302 Score = 346 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 155/303 (51%), Positives = 208/303 (68%), Gaps = 3/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNLM YRL++ + +++ QL F PCG+QD +K GW P+ SD L Sbjct: 1 MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPL-RGSDLLYFSVG 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 QI++ A+KEEKILP+ V+K+ L+ +I LE ++ RKLKK EK +LKD+V+ +LLPRAFS Sbjct: 60 KQILLIAKKEEKILPANVVKRELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + T +WIDT N LI +D AS+K+AED LALLRKSLGSLPVVPL+ N LT W+ Sbjct: 120 KNQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLPVVPLAFANEPSTILTNWIL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKV-VTKLALDWQQRI 240 + L+EAEL+ ED VIR KKQ L +EEI ++ GK V+KLAL+W+ + Sbjct: 180 QDNLPHWLLALEEAELRGSQED-SVIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTL 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV +D ++KRLKF D +R++N+DI +EDFAQRFDADF+LMTG LA L +NL++ GGE Sbjct: 239 TFVFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGE 298 Query: 301 AQR 303 R Sbjct: 299 KAR 301 >UniRef50_A4Y4Y9 Recombination-associated protein rdgC n=26 Tax=Gammaproteobacteria RepID=RDGC_SHEPC Length = 304 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 150/298 (50%), Positives = 204/298 (68%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +YR ++ + E +E LA F+PC SQD++K G+ +G +L H AN Sbjct: 1 MWFKNLTLYRFNKPFVVETEALETALADFTFSPCSSQDISKFGFSNALGKKGSSLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +IC KEEK+LP VIK+ALE K+A +E E+ RKL K EKD+LKDE++ SLLPRAFS Sbjct: 61 NRHLICVTKEEKMLPGQVIKEALEEKVALIEDEENRKLAKKEKDALKDEIITSLLPRAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R SQT I +I+VD +SA KAE+ LALLRK+LGSLPV+PLS + P+E LTEW++ Sbjct: 121 RRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPVESHLTEWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +GSA F++ DEAELKS ++GG++R K+QDL +E+ H+ GK V KLAL + Q I Sbjct: 181 NGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 ++ D S+KRLKF +E R N+++ +D R DADF LM EL AL+ L+ LGG Sbjct: 241 LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVSALGG 298 >UniRef50_C5S756 Putative exonuclease RdgC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S756_CHRVI Length = 315 Score = 344 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 120/296 (40%), Positives = 186/296 (62%), Gaps = 1/296 (0%) Query: 3 WFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANG 62 FKN +RL + A E+E+ L F PCG + A +GW P+G + AL +G Sbjct: 1 MFKNARFFRLDQPFEFTAAELEEALGGRRFRPCGPIETATLGWTSPLGEETTALVQAVSG 60 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122 +ICAR++E++LPS + +AL+ ++++LEA +AR + + E+ L++++++ +LPRAF+R Sbjct: 61 CYLICARRQERLLPSAAVAEALDERVSELEAGEARDVGRAERRRLREQIINEMLPRAFTR 120 Query: 123 FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRS 182 +T +++DT +G ++VD +S K+AE+ ++LLR++LGSLPV P LT W+ Sbjct: 121 SRRTQLYLDTESGWLVVDSSSEKQAEEVVSLLRETLGSLPVRLPDPVRPAANVLTSWLLD 180 Query: 183 GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 SA F D EL+ + E GV+R +QDL SEEI NH+ AGK VTKLAL+W +R+ F Sbjct: 181 ESAPNDFVPGDACELRDVGEQAGVVRCSRQDLASEEILNHLRAGKQVTKLALEWDERLSF 240 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 + DD SLKRL+ + L ++ D D D AQR DA+F ++ ++ LI L E G Sbjct: 241 TLADDLSLKRLRVGEALLEEL-DGDDMDPAQRLDAEFAILALQVRQLIARLDEVFG 295 >UniRef50_A4JTE0 Putative exonuclease, RdgC n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTE0_BURVG Length = 301 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 155/300 (51%), Gaps = 3/300 (1%) Query: 3 WFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANG 62 F NL +YRL+RE + AE +E+ + F PCGSQD GWV P L H Sbjct: 1 MFSNLHIYRLTREWDMTAERLEELVGKRPFQPCGSQDQKSAGWVSP--QEHGPLVHALGR 58 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122 Q ++ R E K +P IK+A+ K E K + +K+E L LLPRAF + Sbjct: 59 QWLLALRIETKSVPGEAIKKAVAEKSKDYEQRNGYKPGRKVVKDMKEEALMELLPRAFPK 118 Query: 123 FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRS 182 + +WI+ +G I ++ ++ KA+D +A L ++ + P+ + + +W+ S Sbjct: 119 QATIQVWINAESGWIAMNTSTPSKADDVVAALIETSSTAPISLVRTNQSPAQAMADWLTS 178 Query: 183 GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 G A F + + ELK ++ ++ + L +EI HIE GK TKLA+ W R F Sbjct: 179 GEAPDNFTVDRDCELKGTEDEKPTVKYSRLSLERDEIRQHIEEGKRPTKLAMTWDDRASF 238 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 ++ D G +K+L F D + ++ +D ED F + F +MT EL+ +L+E LGGEA+ Sbjct: 239 ILTDKGQVKKLVFLDAVMEEIN-LDAEDADAVFHSTFAIMTAELSRFFPDLVESLGGEAE 297 >UniRef50_A0Z347 Recombination associated protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z347_9GAMM Length = 327 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 117/298 (39%), Positives = 177/298 (59%), Gaps = 1/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL YRL + L AE M ++L S FTPC GWV + + D+L H A Sbjct: 28 MWFRNLRAYRLPERLGLDAEAMAQRLESRPFTPCRPAQPLSAGWVAALDDNVDSLVHAAG 87 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++ ++EEK+LPS VI+ + +++ +++ +ARK+ + E+ L DEV L+PRAF+ Sbjct: 88 PYWLLRLKREEKLLPSSVIRDEVGSRVLQIQTAEARKVHRKERLQLTDEVTQDLMPRAFT 147 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + +G + V+ ASA +AED L+ LR++LGSLP V ++EW+ Sbjct: 148 RARSIEAMVFEKDGWLWVNNASAPRAEDFLSALREALGSLPAVLPVTRKNPAAVMSEWLL 207 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +GF+L EA+L E+GGV+RA+ L +EI HIE+GK V +LAL WQ R++ Sbjct: 208 HDQLPEGFELGTEADLVEPGEEGGVVRARSMLLDCDEIRAHIESGKQVQRLALAWQGRLE 267 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D ++RLKF + L ++DI+ ED R DADF+LM+ LA L L++ GG Sbjct: 268 FVLGADLVIRRLKFAEALTTAHDDIN-EDPLARRDADFLLMSETLAELWPALLQAFGG 324 >UniRef50_Q8H9Q5 ORF10 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q5_9CAUD Length = 309 Score = 340 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 124/300 (41%), Positives = 194/300 (64%), Gaps = 2/300 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN + YR + L E++EK L F GSQ ++ GW +G ++ +HVAN Sbjct: 1 MWFKNAIFYRFDKAKELDFEQLEKALQEYQFKEAGSQQVSSFGWSKVLGESAELFSHVAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ICA+++EKILP+ VI++A +A+I ++ + +ARK+ K E++ LKD+V+ LLP+AFS Sbjct: 61 GCVMICAQRQEKILPADVIRRAHKARIDEVISREARKVGKKEREHLKDQVIQELLPKAFS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R+S++ +IDT GL +VD ++ KKAED ALLRKSLGSLP+VP +N +T W+R Sbjct: 121 RYSKSFAYIDTKRGLFVVDASAFKKAEDLGALLRKSLGSLPIVPTHTKNMPTDVMTNWLR 180 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 S G L D EL+ ++DGG++R +Q++T +E+T H+ GKV T++A++W+ ++ Sbjct: 181 SLDKLPAGIVLGDAVELRDPVQDGGIVRLTRQEITEDEVTTHLNVGKVATRIAINWEDQV 240 Query: 241 QFVMCDDGSLKRLKFCDELRDQNED-IDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 V+ +D L +KF D L ++ D D E A +FDADF++M +A L + GG Sbjct: 241 NMVLHEDVRLTGIKFDDRLVERAMDQGDGESAAAQFDADFVIMAETMAQLYVRITGLFGG 300 >UniRef50_Q15X11 Recombination-associated protein rdgC n=4 Tax=Alteromonadales RepID=RDGC_PSEA6 Length = 301 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 123/296 (41%), Positives = 193/296 (65%), Gaps = 2/296 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +Y L++ + L E+++ +LA F PCGSQ++A MGW P+G D L H A Sbjct: 1 MWFKNLKLYHLTQTLDLTEEDIQDKLAEFPFRPCGSQELATMGWTSPVG-QGDMLVHSAG 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G+ + +K+E+ILP+ V+ L K+A +EAE + K + +K+E++ LLP+AF+ Sbjct: 60 GKFWLTLKKQERILPAAVVNAELADKVALMEAETGSNVGKKAQQEMKEEIIQRLLPQAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S + +I T + L++VD ++ KAE LA+LRK++GSLPVVPL+ + ++ LT W+ Sbjct: 120 KNSFSHGFISTQDNLVVVDASADGKAETFLAMLRKAIGSLPVVPLA-KQSVQEELTHWLT 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S +L+EAEL+S+ EDG ++R K QDL SEEI NH+ AGK V K+A++W + Sbjct: 179 DDSVPNDVVILEEAELRSMEEDGAIVRCKNQDLGSEEIANHLSAGKTVQKIAIEWDETFS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 ++ +D ++KRLKF D + +QN+DI +ED + DADF LM+ E+ + L+E Sbjct: 239 ALLQEDMAVKRLKFTDVMTEQNDDIPKEDKLAKMDADFALMSAEIVRFSKRLVEIF 294 >UniRef50_Q8L2C7 DNA recombination protein n=2 Tax=Enterobacteriaceae RepID=Q8L2C7_PROVU Length = 333 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 151/298 (50%), Positives = 207/298 (69%), Gaps = 2/298 (0%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 K+++VYR++R+I + +QL + F PCG QDMA+ GWV P+G + LTH ANG I Sbjct: 7 KSVVVYRITRQIDFS--NIAEQLKTFVFQPCGPQDMARTGWVSPLGEEYEELTHQANGLI 64 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFS 124 ++ R E KI+P +K+ + ++ KLE EQ R+LK+TE +L D VL LLP+A S+++ Sbjct: 65 LLTQRNESKIIPPATVKELVRQRVTKLEKEQHRRLKRTEISALNDLVLGELLPKALSKYA 124 Query: 125 QTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGS 184 MWID + LI+VD S K+AED ALLRK+LGSLP++P ++E P+EL LTEWVRS Sbjct: 125 NMNMWIDPKSRLIIVDTTSFKRAEDAAALLRKTLGSLPIIPFTLETPVELKLTEWVRSSE 184 Query: 185 AAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVM 244 G L DEA L+++LEDGGV+ K+QDL +EI NHIEAGK+VTKL++ W +++ FV+ Sbjct: 185 LPPGLALCDEATLEAILEDGGVVTTKRQDLVCDEIANHIEAGKLVTKLSMSWMEQLNFVI 244 Query: 245 CDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 D + RL F D L +QN+DIDRED QRFDADF+L TG + L+ LI GGEA+ Sbjct: 245 NDSFVISRLNFADALIEQNDDIDREDEVQRFDADFVLFTGVIMELLDQLIAAFGGEAK 302 >UniRef50_B1K4Q5 Recombination-associated protein rdgC n=44 Tax=Betaproteobacteria RepID=RDGC_BURCC Length = 307 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 177/298 (59%), Gaps = 3/298 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++RL ++ ++MEK LA AF P S +M ++GW P AL + N Sbjct: 1 MWFKNLQLHRLPAPWAVTPDQMEKWLAPHAFQPGSSVEMQRVGWASP--RDDGALVYSNN 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q+++ R E+K+LP+ V+ Q +A+ ++E +Q K+ + + LK++V LLPRAFS Sbjct: 59 RQMLLLFRAEKKLLPASVVNQVTKARALEVEEQQGFKVGRKQLRELKEQVTDELLPRAFS 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 T +WIDT NG +++D A+ A+D +LL KS+ LP+ + + +T+W+ Sbjct: 119 IRRDTRVWIDTANGWLVIDAAAQALADDVRSLLVKSIDQLPLAGVHVARSPVAAMTDWLL 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 SG A GF + +AEL+S E G +R L + ++ HIEAGK +LA+ W RI Sbjct: 179 SGEAPGGFTVDQDAELRSSGEGGATVRYVGHALEANDMRRHIEAGKQCMRLAMTWNDRIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ ++KR+ D +++ + + D +RFD+DF LMTGELA ++ +L++ LGG Sbjct: 239 FVLTPSLTIKRVTPLDVIKEAADPTAQND-DERFDSDFTLMTGELARMLASLVDILGG 295 >UniRef50_C6MGX0 Putative exonuclease RdgC n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MGX0_9PROT Length = 295 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+NL VYR++ ++ +E+ L++ A PC +M GW+ P S + Sbjct: 1 MWFRNLQVYRIT-SGNITLNSLEEALSNHALQPCLQMEMQSRGWMTPR-EESQNFVYAYG 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q +I E+K+LP+ VI Q + +AK+E Q K K + +K+ + L+PRAF+ Sbjct: 59 QQWLIALGVEKKLLPAGVINQQAKDHLAKMEQMQGYKPGKKQIRDIKEATIIELMPRAFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + +T WID V +++D AS +KA++ + +L KS+ L + PL + +T W+ Sbjct: 119 QRHKTYAWIDAVKNRLIIDTASTQKADELVEVLVKSMHGLTLAPLETQTSPSSAMTRWLS 178 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 F + + EL+ + ++ ++ L +EE HI AGK V KLA+ W +I Sbjct: 179 GTDLPSIFSIDRDCELQGMNDEKATVKYTHHVLEAEETARHIRAGKKVIKLAMTWDSKIS 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ D+ L+R+ D +++ ED + F +DF +MTGEL+ LI +++ LG E Sbjct: 239 FVLHDNLQLRRIVPQDIVKES-----TEDAEELFVSDFAIMTGELSQLITEMVDALGSE 292 >UniRef50_A2SN77 DNA recombination-dependent growth factor n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SN77_METPP Length = 332 Score = 331 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 154/300 (51%), Gaps = 4/300 (1%) Query: 3 WFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANG 62 FKNL VYR+ + E E L F CG+ GWV P G L Sbjct: 13 MFKNLSVYRIQGDWHPAIAEAEASLQKFRFAECGATQAISAGWVEPRGEKHGPLVEAVGD 72 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122 Q ++ + K+LP+ VIKQ ++A+I +++ +AR+ K E +K+ V+ LLP+AFS+ Sbjct: 73 QWMLTLCIQTKLLPAGVIKQHVDARIEQIKQREARRPGKKEVREIKEAVILELLPKAFSK 132 Query: 123 FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRS 182 +WID N L+ +D AS K + + L K+L L + + + +++W+ Sbjct: 133 KEHISVWIDRKNKLVAIDTASQSKCDTATSALVKTLDGLAIGLIQTQMSPGTCMSQWLMD 192 Query: 183 GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 G A GF + E ELKS E ++ + L +E+ H+ GK T+LA+ W R+ F Sbjct: 193 GEAPDGFGVERECELKSSDESRSAVKYSRHVLDIDEVKQHLTHGKTPTQLAMTWTDRVSF 252 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 + D +LK++ F + + + +D FDA+ ++TGEL+ LI LIE LGGE + Sbjct: 253 TLTDAMALKKVTFLETPLMK-KKAGGDDP---FDANAAIVTGELSQLIPQLIEALGGELE 308 >UniRef50_A3WJE4 DNA recombination-dependent growth factor C n=2 Tax=Idiomarina RepID=A3WJE4_9GAMM Length = 297 Score = 329 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 129/294 (43%), Positives = 182/294 (61%), Gaps = 1/294 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN VYR S L E+ E QL + AF PCG QDM GW G+ SD L H Sbjct: 1 MWFKNARVYRFSDTFQL-PEDFESQLEAQAFKPCGRQDMTSFGWTSVFGAQSDVLHHAVE 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++CA++EEK+LP+ VI LE K+ ++ + R + EK ++K+++ H LLP+AFS Sbjct: 60 QSYLVCAQREEKVLPAAVINAELEQKVQAIQDTEGRPVNGKEKKNIKEDITHQLLPQAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +F +T +ID L++VD +SA KAED L LLR SLGSLPV P+++ E+ LTEW+ Sbjct: 120 KFRRTWAYIDLKRQLVIVDESSANKAEDLLGLLRASLGSLPVKPIALAESAEVVLTEWLT 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 S F L DE EL+S DGG+IR K++DLT E++ H AGK V KL L W +RI+ Sbjct: 180 KQSLPSRFDLGDELELRSPQADGGIIRCKQEDLTREDVQAHATAGKQVVKLGLVWNERIE 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIE 295 V+ D +LKR+K D+L D +D + Q+ D+D L++ EL AL+ +L+ Sbjct: 240 CVLEADWALKRIKATDQLLDDQDDWNDASPEQKLDSDLALVSAELGALLDDLLS 293 >UniRef50_Q3II43 Recombination-associated protein rdgC n=3 Tax=Alteromonadales RepID=RDGC_PSEHT Length = 303 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 129/297 (43%), Positives = 200/297 (67%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF NL+ YR +++S E+ +K L F PC Q++A GW G H + L+H + Sbjct: 1 MWFSNLICYRFKQDVSYTQEDFDKALEQDLFRPCTGQELATFGWTKAFGKHGETLSHFSQ 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I++CA++EEK+LP+ VI + + K+ +EAE+ R +KK EKD LK+ +LH+LLP+AF Sbjct: 61 KSILVCAKREEKVLPASVINELVAEKVDLIEAEENRPVKKKEKDELKENILHTLLPQAFK 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S +ID NG ++V+ S KAE+ LALLRKSLG+LPVVP +++ LT+W+ Sbjct: 121 KSSLQFAFIDQENGWVVVNSGSFNKAEELLALLRKSLGTLPVVPAFANYDLDVFLTDWLT 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + S +GF + +AEL+ + G ++ K DL+ +E+ +H+E GK VTKLALDWQ+R++ Sbjct: 181 NFSTPEGFAIGSDAELEEADDSGAQVKLKGHDLSCDEVKSHLETGKRVTKLALDWQERVK 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLG 298 F++ +DGS+KRL + D L+++N DI +ED A + DADFIL + E+ L++ L +GLG Sbjct: 241 FMLQNDGSIKRLSYSDTLKEENADIPKEDMAVKLDADFILASEEIKQLLEELTQGLG 297 >UniRef50_A3EHV2 Recombination-associated protein RdgC n=2 Tax=Vibrio cholerae RepID=A3EHV2_VIBCH Length = 369 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 137/302 (45%), Positives = 206/302 (68%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++ KNL++YR++R+I E+ME L T GSQD K GWVP + + S AL H ++ Sbjct: 1 MFPKNLLIYRVNRDIQFDPEKMETLLGEFKLTQLGSQDKQKFGWVPALYNKSSALVHSSS 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I+I A+K EK++P+ +I + ++ K+ +LE E+ R LKK +++ ++++++ +LP A Sbjct: 61 GNILIRAQKSEKLIPASIISKMVKEKVEQLEREEGRPLKKKDREQIREDIIIDILPTALI 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S T ++I GLI+VD +S KKAED+LALLRK+LGSLPVVPL +E TLTEWV+ Sbjct: 121 KESFTSLFILPSQGLIIVDASSYKKAEDSLALLRKTLGSLPVVPLIPAVAVETTLTEWVK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 + GF + + A ++S+LE G + K ++L++E I HIE KVVT L++DWQ RI+ Sbjct: 181 TAQVPSGFSIGNSAVMQSILEKGAQVTLKNEELSAESIQKHIEENKVVTALSIDWQDRIK 240 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 F + D ++ R+KF DEL++QN+DI RED A R DADF L+ GEL A +LI+ LGG + Sbjct: 241 FTLKDTMAITRVKFADELKEQNDDIPREDLAARLDADFTLIAGELTAFCSHLIDALGGVS 300 Query: 302 QR 303 Q+ Sbjct: 301 QQ 302 >UniRef50_A6GUC5 Recombination associated protein n=5 Tax=Betaproteobacteria RepID=A6GUC5_9BURK Length = 327 Score = 322 bits (827), Expect = 7e-87, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 5/299 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL ++RL++ E +E +LA A CG D+ GWV P + + H + Sbjct: 29 MWFKNLFIFRLTK-WEETPESLEDKLAKQALQACGGMDLQTRGWVSP-KAEGEPFVHRSG 86 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Q++I E+K+LPS VI Q +A+ ++E + K + + +K+ V LLPRAF+ Sbjct: 87 QQLLISLGLEKKLLPSTVINQFTKARATEIEEREGYKPGRKQMKEIKEAVTDELLPRAFA 146 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 S+ WID +++D AS KA++ + +L KS+ + + + + + +T W+ Sbjct: 147 IRSRINAWIDLEGKWLVIDAASPAKADELIGMLMKSVEGVAMALVKTKISPTVAMTAWLA 206 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 F + + ELKS E +R K L SEEI HI+ GK VTKLA+ W ++ Sbjct: 207 ENDNPPPFTVDQDCELKSRGEQAATVRYVKHSLESEEIAKHIKGGKDVTKLAMTWADKVS 266 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 FV+ ++ +KR+ D +++Q +D LMTGEL LI LI LGGE Sbjct: 267 FVLHENLQVKRVAPLDVIKEQAALSADDDAFDSDF---ALMTGELRKLIPGLINVLGGE 322 >UniRef50_O87408 Recombination-associated protein rdgC n=29 Tax=Neisseriaceae RepID=RDGC_NEIG1 Length = 299 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 175/298 (58%), Gaps = 2/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK + Y L++E A+ + +LA FT C D G+ P+ S S L A+ Sbjct: 1 MWFKQISFYPLNKEKLPEADVLADKLAEAEFTHCQGLDWFSEGFTAPV-SFSPELVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + + +KEEK+LP+ VI+ LE K+A+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTLRVALKKEEKVLPAGVIRDILEEKVAEIQNNEARNVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S+T +T +G ++V+ A++ KAE+ L LR++LG L + + +T W+ Sbjct: 120 RSSRTEAVFNTRHGYLLVNNAASAKAENILTKLREALGGLEASLPNTKQSPSSLMTGWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G GF+L + ELK + V++ KQDLT++E+ H++ GK VT+L L W+++I Sbjct: 180 QGHCEGGFELDSDCELKGTGDIVPVVKVSKQDLTADEVVQHVKNGKTVTRLGLVWREQIA 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 F++ D +LKR+++ D L+++ + + +D A A ILM ++ +++ L+ LGG Sbjct: 240 FILTQDFTLKRIQYLDVLQEEA-ESNGDDAAGLAFASQILMAESVSTMLEELVSYLGG 296 >UniRef50_C0DWI1 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DWI1_EIKCO Length = 299 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 171/298 (57%), Gaps = 2/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK + Y L+++ E + +L F P D G+ PP G + L A+ Sbjct: 1 MWFKQVSFYPLNKDKLPDLETLSAKLQEAEFAPPQGLDWFGEGFAPPEGFLPE-LVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + +K EK+LP+ VI++ L+ KIA+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTWSVALKKSEKVLPAGVIREILDDKIAEIQEAEARTVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S+T DT +G ++V+ ASA +AE+ LA LR++LG L + + +TEW+ Sbjct: 120 RSSKTQAVCDTRSGFLLVNQASATRAENLLAKLREALGGLEAKLPNTKQSPSSLMTEWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ GF+L D ELK + +R KQDLT++E+ H++ GK VT+L L W+ +I Sbjct: 180 QGACGGGFELDDMCELKGTGDAAPTVRVSKQDLTADEVVQHVKTGKTVTQLGLVWRDQIA 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ D +LKR+++ D L+++ + +D A A ILM L+ L+Q L+ LGG Sbjct: 240 FVLTQDFTLKRIQYLDVLQEEA-ESHGDDAASLAFASQILMAEALSTLLQELVSLLGG 296 >UniRef50_Q0VLT7 Recombination associated protein rdgC n=2 Tax=Alcanivorax RepID=Q0VLT7_ALCBS Length = 301 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 156/297 (52%), Gaps = 2/297 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +W KNL V+ E+++ L PCGSQ G+VPP+ D + + + Sbjct: 1 MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPL-KGQDPMAYAVD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I ++ ++LP PVIK+ L+ K+ ++ E+ RK+ + EK LK+++ L+PRAF+ Sbjct: 60 GFIFCTYQETARLLPGPVIKELLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R +T + IDT +MVD +SA + E+ +A LRK++G+LPV + + + + W+R Sbjct: 120 RSRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLPVAYPAPNSAPYTSFSNWLR 179 Query: 182 SGS-AAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 +GF L D ELK + ++G ++ DL EEI H+E G V T++ L WQ + Sbjct: 180 DTKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSL 239 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 + + D +KR+K D L++ + +D ED A L L I +L Sbjct: 240 ELDINDKLEIKRIKALDLLQENIDALDAEDAVAELQARISLQGKVLRDAIDSLYGYF 296 >UniRef50_A3Y751 Recombination-associated protein RdgC n=2 Tax=Marinomonas RepID=A3Y751_9GAMM Length = 300 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 90/296 (30%), Positives = 161/296 (54%), Gaps = 1/296 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKN+ ++L+ ++ E+ +LA CGSQ+ GW+ P+ +S+ +N Sbjct: 1 MWFKNVQFFQLTDTDAIDTNELIDKLADFPLKECGSQEEYSFGWM-PLIRNSEQWYLASN 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 ++I A KEEK+LPS V+++ LE KI+++E + RK+ + EK +KDE++ +L P+AFS Sbjct: 60 KCVLIRAGKEEKVLPSSVVREELEIKISEIELIEGRKVGRKEKADIKDELVFTLRPKAFS 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S ++D L++++ +A E L+ +LGS P+ PL + ++ W+ Sbjct: 120 KRSDIWAYLDMEAKLLVINSTNASMTELLFKQLQTTLGSFPMAPLMPQESPSGLMSNWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 +E E++ E+ IR K + SE++T HIE G V LAL W +++ Sbjct: 180 KNELPASLNTGEECEIQDGSEEKASIRFKALEPLSEDVTRHIEQGMRVKSLALKWTEKLN 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 FV+ +D SL+++KF D ++++ + + DA+F LM+ EL + Sbjct: 240 FVLHEDLSLRKIKFDDTIKEKAFNDSQGGGLSDLDANFALMSLELREFYDSYKLWF 295 >UniRef50_B5AX95 Putative exonuclease RdgC n=1 Tax=Iodobacteriophage phiPLPE RepID=B5AX95_9CAUD Length = 300 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 163/300 (54%), Gaps = 2/300 (0%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M FK++ ++RL + L +E L + TPCG DM G+VPP D + + Sbjct: 1 MKPFKSINLFRLPADHGLSLTCIEADLFTKPSTPCGPGDMETRGFVPPAPHMPDQIVYFN 60 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 ++I + E KI+PS V+KQ +IA +E E+ RK+ + E +++ +L AF Sbjct: 61 QQAVLIHLQTETKIIPSAVVKQEAAKRIASIEKEEGRKVGRKEAKDIQETCRDTLKLTAF 120 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 ++ + ID GL+M++ +S KAED L+ LR++LG L + + +T WV Sbjct: 121 TKITTQRAIIDLKMGLVMIEASSTGKAEDMLSALREALGGLNTKLVQINRRPSSAMTFWV 180 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 G F L D E+KS E G + +QDL + E+ H+ GKVVTKLAL+W+ +I Sbjct: 181 FDG-PEDEFLLGDFCEMKS-EESGATAKCSRQDLDAVEVEEHLRTGKVVTKLALEWKDKI 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 F + ++ +KR+KF D L+DQ + D + F++ L GE+ +I +LI+ LGGE Sbjct: 239 SFQLTENLEIKRVKFMDILQDQLKGADVDTQDAMFESSATLFIGEIRLMIADLIDALGGE 298 >UniRef50_C7RD57 Putative exonuclease RdgC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RD57_KANKD Length = 301 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 161/296 (54%), Gaps = 2/296 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WF+N +Y L+ EE+ + L + F+ G QD +GW+ P+ + L H AN Sbjct: 1 MWFRNCYIYHLTSSFQHSPEELAELLENQRFSSVGRQDTETLGWISPLNRQFEHLVHSAN 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++C RKE+K++P+ ++K+ LE +++ +EAE+ RK+ EK +LKD++L L P+A S Sbjct: 61 GCILLCLRKEQKVIPASMVKETLEERVSTIEAEEGRKVFGKEKTALKDDILSLLKPKALS 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + S T +ID N L++++ S A+ + LL SLG+L V L E + W++ Sbjct: 121 KSSHTYGYIDPRNNLLVINAGSNAVADSFIELLIDSLGTLGAVRLMGEESPSAIMNRWLK 180 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G + L + E K D V + K + ++ I + +E G V KL + ++ + Sbjct: 181 DG-LPYDWTLTGQYEFKDPQND-RVAKFKDSEESNPLIDDLLEDGYWVEKLGIRYKDQFN 238 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 V+ D +K +KF DEL +NE+ID + R DAD +LM+ LA I L Sbjct: 239 AVIQSDMLIKSIKFDDELLKENEEIDDIEPYARLDADLVLMSQTLAEFIAELKTEF 294 >UniRef50_A2SM13 DNA recombination-dependent growth factor n=19 Tax=cellular organisms RepID=A2SM13_METPP Length = 312 Score = 306 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 159/300 (53%), Gaps = 2/300 (0%) Query: 3 WFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANG 62 FKNL VYR+ E S A ++E++LA+ FT CG+ GWVPP G AL G Sbjct: 1 MFKNLTVYRIGPEWSGSATQIEERLATARFTECGATQALSAGWVPPRGQAHGALVESVAG 60 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122 Q + E+K+LP+ V+K+ + + E + RK + LK++ LLP AF++ Sbjct: 61 QWLATLMVEQKLLPAAVVKRRTDELAQRAEHDTGRKPGRKHLKELKEQAALELLPMAFTK 120 Query: 123 FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRS 182 + +W+D L++VD +S +A D + L K L LPV PL + W+ Sbjct: 121 RATFRVWLDPQRRLLIVDASSPARAGDVVTHLVKVLDGLPVAPLQTALSAATAMAAWLAD 180 Query: 183 GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 G Q F + E ELKS E V+R + L ++E+ HI GK T+LAL WQ R+ F Sbjct: 181 GEPPQAFSVDRECELKSDDEQKSVVRYARHRLDTDEVRQHIGEGKRPTRLALTWQGRVSF 240 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQ 302 V+ D G +K+L F D + D + R D FDAD + TGEL LI +L++ LGGEA Sbjct: 241 VLTDAGQIKKLDFLDGVFDAHP--GRADADAAFDADVAIATGELVQLIPDLVDALGGEAD 298 >UniRef50_C4GKZ6 Putative uncharacterized protein n=2 Tax=Neisseriaceae RepID=C4GKZ6_9NEIS Length = 301 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 169/298 (56%), Gaps = 2/298 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK L Y ++ E + + +L+ F P D G+ P S S L A+ Sbjct: 1 MWFKQLNFYPINLETLPDLDTLTAKLSEAEFAPITGLDWFSEGFTAP-QSFSPELVFPAD 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 I +K EK+LP+ VI++ L+ K+A+++ +AR + + EK LK+++ LLPRAF+ Sbjct: 60 FTWSIALKKAEKVLPASVIREILDDKVAEIQTAEARSVGRKEKQELKEQITDDLLPRAFT 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S+T DT +G ++++ A+A KAE+ L+ LR++LG L + +TEW+ Sbjct: 120 RSSRTQAICDTKHGYLLINNANANKAENLLSKLREALGGLEARLPQTQQSPSSLMTEWLL 179 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ GF+L D E+K + VI+ KQDLT+ E+ H++ GK VT+L L W+++I Sbjct: 180 QGACQGGFELDDNCEIKGSGDVVPVIKIAKQDLTAPEVVQHLKDGKTVTQLGLVWREQIA 239 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 FV+ + +LKR+++ D L+++ + +D A A ILM + +I L++ LGG Sbjct: 240 FVLDANFALKRIQYLDVLQEEA-EQHGDDAASLAFASQILMAESIGNMISELVDYLGG 296 >UniRef50_A4JWD6 Putative exonuclease, RdgC n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JWD6_BURVG Length = 369 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 12/303 (3%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL +++L+ + ++ A+ + +LA AF+PC +G+V P + N Sbjct: 1 MWFKNLTLFKLT-DFAIDAQTLSDKLAKAAFSPCTDLQEKSVGFVTPRP--DSPHVYAVN 57 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G+ +I R +++ LP V+K+ + + A+ E E K + LK++ + +LLP+AF Sbjct: 58 GEFLIALRTQKRNLPGSVVKEEVARRAAEYEKEYGHKPGRKMLKELKEQSIDALLPQAFK 117 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVV--PLSMENPIELTLTEW 179 T WI GL+++D AS A+D + L +++ +PV PL+ +++W Sbjct: 118 TSRTTHAWISPKAGLLVIDTASTAIADDFIGALLRAI-EVPVKLHPLATNTAPSAAMSKW 176 Query: 180 VRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQR 239 + + +A + GG I+ + ++ +EAG+ V+ LAL W + Sbjct: 177 LLD-EPPSFLTIDSDAVFVTTH--GGNIKYSNTPVEGDDAKRQLEAGQRVSSLALTWDDK 233 Query: 240 IQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 + FV+ G++KR+K D L+ + D ED F +DF+LM G LA ++ L+E LGG Sbjct: 234 VSFVLAGKGTIKRVKALDVLKGEAADKADEDS---FASDFLLMAGTLAQMVGELVESLGG 290 Query: 300 EAQ 302 E + Sbjct: 291 ERE 293 >UniRef50_B2I7H2 Recombination-associated protein rdgC n=24 Tax=Xanthomonadaceae RepID=RDGC_XYLF2 Length = 302 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 3/293 (1%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++F+NL ++R SL +++ L + P G +M G++ P G + + Sbjct: 1 MFFRNLTLFRF--PTSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQ 58 Query: 62 GQIV-ICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 G + + E+KILP+ V+ L K +++E ++ E+ +KD+++H LLPRAF Sbjct: 59 GDFLWLTVGSEDKILPASVVNDLLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAF 118 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + S+ +D G + VD AS K AE ++ +R LGS P +PL+ E I LT W+ Sbjct: 119 VKNSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFPALPLNAEISIRSMLTSWI 178 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + L DE E+K E G +I+ + Q L EEI H+E GK V+KLAL + Sbjct: 179 AGEPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHV 238 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNL 293 FV+ DD +++LKF D + DQ E D + DA F LM+ E+ L L Sbjct: 239 SFVLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLFLLL 291 >UniRef50_Q1QVI8 Putative exonuclease, RdgC n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVI8_CHRSD Length = 308 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 179/303 (59%), Gaps = 3/303 (0%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFK+L +YRL + + +E L + AF P + ++GW P G H H Sbjct: 1 MWFKHLHLYRLHDTTPVALDALETALEAFAFRPVSPSEGKRLGWQCPAGRHGQQRVHEIQ 60 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G ++ A ++E++LP+ VI++ +E + A+ EA + R L + ++ ++K++V+ LLPRAF+ Sbjct: 61 GHRLLSALRQERLLPASVIREEVEERAAEREAAEGRPLPRRDRQAIKEQVVEELLPRAFT 120 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R + +W DT GLI ++CAS +AE+ L LLR+SLGSL V PL++ T+T W+ Sbjct: 121 RSQRIDLWWDTARGLIAINCASRTRAEEALDLLRQSLGSLQVTPLTVRQLPSRTMTTWLE 180 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 S +G +L D+ ELK +DG V RA+ DL +E+ + + G+ ++LALD + ++ Sbjct: 181 DMTSRPEGLRLGDQVELKDAGDDG-VWRARGIDLDGDEVQSVLAGGRQASRLALDIEDQL 239 Query: 241 QFVMCDDGSLKRLKFCDELRDQNED-IDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 V+ DD +LK L+F D + D+ D +D R + DF LM L+ I+ LI+ LGG Sbjct: 240 SLVLHDDLTLKSLRFADAVLDEASQNEDDDDPILRLETDFALMAHVLSGFIEQLIDWLGG 299 Query: 300 EAQ 302 EA Sbjct: 300 EAD 302 >UniRef50_Q1N0M2 Recombination associated protein n=1 Tax=Bermanella marisrubri RepID=Q1N0M2_9GAMM Length = 306 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 161/299 (53%), Gaps = 8/299 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 + +N Y L++ + A + +L+ F PC + GWV P + D L + A+ Sbjct: 1 MQIRNFYWYALTKPLDDTAS-VAGKLSKAPFAPCMATQEMSQGWVAPAPNTDD-LVYEAH 58 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I++ ++E+++LP+ VI L ++ E + + K +KDEV+ LLPR+F+ Sbjct: 59 GAILLMLKQEKRLLPASVINDFLAERVEAFEQAEGYAPSRKIKQQMKDEVVQDLLPRSFT 118 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + + + I G + V +S+K A+D A LR++LGSLP+ ++ E T+T+W++ Sbjct: 119 KSLRLPVMIMPRQGWLFVLSSSSKTADDVTAFLRETLGSLPIALMNSEVSPAFTMTQWLQ 178 Query: 182 S-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + + + +E EL E +R KKQ L SEE+T H++A K V KLAL W++ I Sbjct: 179 QPKTLPDNWTVGEEVELVDAEE--ASVRIKKQSLYSEEVTAHLDASKQVAKLALLWREDI 236 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 Q ++ DD S+KR+K + + ++ ED RF +F + L L +L++ LGG Sbjct: 237 QILLQDDLSIKRIK---SIAEPDDMDMPEDPLARFAHEFAVTCQWLKPLCDDLLKALGG 292 >UniRef50_A1VR42 Putative exonuclease, RdgC n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VR42_POLNA Length = 351 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 11/307 (3%) Query: 3 WFKNLMVYRLSREIS-LRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 FK+ +R++ + + +E+ L S F PCG+ +GWVPP G+ S + Sbjct: 24 MFKSASFFRIATDFVLPPLDALEEALQSAQFMPCGATQAESVGWVPPRGNKSTVMVETVG 83 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQAR-KLKKTEKDSLKDEVLHSLLPRAF 120 Q+++ E + LP+ +K +E ++ K + E R ++ K K+E + SLLPRAF Sbjct: 84 TQVILRLSIERRPLPASAVKAEVEERVEKYKQETGRERVSAKIKKEFKEEAIQSLLPRAF 143 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLP-------VVPLSMENPIE 173 ++ S T +WID VN ++VD S A+ ++ L ++L +P P+ Sbjct: 144 TKRSSTTLWIDPVNKFLVVDSGSLTGADKVVSQLIEALSEIPGTRPGLMAKPVQTTMAAG 203 Query: 174 LTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLA 233 + W+ S A F + + ELK + +R + L +E+ HI +GKV T+LA Sbjct: 204 AAMAHWLASREAPVSFTVDRDCELKMPDDQKSTVRYSRHTLEIDEVAEHIASGKVPTQLA 263 Query: 234 LDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNL 293 + W +R+ FV+ D +K++K D + D ++ ++D DA ++TGEL+ LI +L Sbjct: 264 MTWNERVSFVLTDMAQIKKIKLLDVVLDGVQENGKDDDGFDADA--AIVTGELSDLIPDL 321 Query: 294 IEGLGGE 300 +E LGGE Sbjct: 322 LEALGGE 328 >UniRef50_A4BHD8 Recombination-associated protein RdgC n=1 Tax=Reinekea blandensis MED297 RepID=A4BHD8_9GAMM Length = 295 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 154/291 (52%), Gaps = 8/291 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 +WFKNL V+ + AE++ ++LA FTP + GWVP S + Sbjct: 1 MWFKNLQVFSFTDAFQFTAEQVNERLAQHEFTPISQMQESSFGWVPSF-KDSSLFCEQVS 59 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G++ A+ ++KILP+ VI L K+ +E E+ R+ + E++ LK+++ LLP+AF+ Sbjct: 60 GRLFFTAQIQDKILPASVINDHLIEKLDAIELEEGRRPARKEREQLKEDIRAQLLPKAFN 119 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + Q WID G ++V+ +S K A+D A LR++LG+L V+P + LTEW Sbjct: 120 KTRQLSAWIDPAKGWLVVNASSDKSADDFTAHLREALGTLQVIPFAKSTSGSDLLTEWFM 179 Query: 182 SGSA-AQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + +L + EL + + R K DL++ EI +E+G V ++A++ Sbjct: 180 DATTRPADTELEADLELTMVQDPTVKARFKNLDLSAPEIQQALESGMRVRQMAMNLIDHC 239 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQ 291 QFV+ + +KRLK+ + L ++ D ED +D ILM+ ++ L+Q Sbjct: 240 QFVINEKLQIKRLKYQEALLEKAHD--NEDPR----SDAILMSDTVSHLLQ 284 >UniRef50_Q5ZW99 Exonuclease involved in removal of stalled replication fork n=6 Tax=Legionella RepID=Q5ZW99_LEGPH Length = 314 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 8/304 (2%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 ++WF N ++++ + + L A PC GWVP + H Sbjct: 2 IMWFNNALMFQYKLDGGCD---LNHSLTEEALKPCPPHARFTYGWVPAF---EQEMVHEV 55 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 G +IC KEE+ILP VI + L+ KI ++EA Q R +K+ EK + +++ LLP++F Sbjct: 56 AGSTLICLGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSF 115 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + + +D+V+ ++++ +S +A + LRKS+ + + PL++ + L EW+ Sbjct: 116 CVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLNLTENLALRFAEWI 175 Query: 181 RS-GSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQR 239 S + FQL + L SL ++ + K +L +EEI + G +++L W++R Sbjct: 176 HSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKER 235 Query: 240 IQFVMCDDGSLKRLKFCDELRDQNEDIDR-EDFAQRFDADFILMTGELAALIQNLIEGLG 298 IQF + D + K+LK D L D +I + E+ QR DA L++GEL L L++ Sbjct: 236 IQFTLTQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFV 295 Query: 299 GEAQ 302 A+ Sbjct: 296 NHAE 299 >UniRef50_D0ZDE3 Recombination-associated protein RdgC n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZDE3_EDWTE Length = 229 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 128/209 (61%), Positives = 165/209 (78%), Gaps = 1/209 (0%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 KN+++YRL+R+I L A+ +E + M FTPC SQDM++ GW P+ + L H ANG + Sbjct: 7 KNVLIYRLTRDIDLDAKAIEAAITPMTFTPCASQDMSRSGWTAPLATAGS-LIHAANGYL 65 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFS 124 ++ R+E+KILP+ VI++ L +IAKLE EQ RKLKKTEKD+L+DEVLHSLLPRAF+R Sbjct: 66 LMRYRREQKILPAAVIQKHLRERIAKLEQEQCRKLKKTEKDALRDEVLHSLLPRAFTRTH 125 Query: 125 QTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGS 184 Q+ +WIDT L+MVD A+AKKAED L+LLRKSLGSLPVVPL+M+ PIE+TLT+WVR+G Sbjct: 126 QSWLWIDTAKKLVMVDAANAKKAEDILSLLRKSLGSLPVVPLTMKTPIEITLTQWVRTGK 185 Query: 185 AAQGFQLLDEAELKSLLEDGGVIRAKKQD 213 A GF L DEAELK+ LEDGG+IR K+QD Sbjct: 186 APAGFTLGDEAELKATLEDGGIIRTKQQD 214 >UniRef50_Q5NWY5 Predicted DNA recombination-dependent growth factor C (Exonuclease) n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWY5_AZOSE Length = 314 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 129/298 (43%), Gaps = 9/298 (3%) Query: 10 YRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICAR 69 + S + EE+E+ LAS F+ G D+ +GWV P + L H + ++ Sbjct: 7 FVFSCDCPHSPEELEEVLASRKFSGIGQLDVDHLGWVNPRELENGPLVHAVDSIFLLALS 66 Query: 70 KEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMW 129 KE KI+P+ +K+ L A A + R + E+ +LK++V SLLP A +R QT Sbjct: 67 KETKIVPASTVKKKLAAAEADATKREGRPPSRKERKALKEQVYESLLPGAPTRIKQTFGV 126 Query: 130 IDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVP----LSMENPIELTLTEWVRSGSA 185 + ++V SAK ED + S + P L P L +TEW+ + Sbjct: 127 LIPPKKQLLVLTTSAKCLEDFHGVFTDSFMKRGMRPSFRKLRTVQPPSLKMTEWLLNNEC 186 Query: 186 AQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMC 245 GF L + EL + +R +L EI H+ GKV KL L + F++ Sbjct: 187 DGGFVLGEHCELT---HEKSKVRYTALELDRPEIREHLLEGKVPVKLGLRHESTTSFIIS 243 Query: 246 DDGSLKRLKFCD-ELRDQNEDIDRE-DFAQRFDADFILMTGELAALIQNLIEGLGGEA 301 + + L F D + + E + FD+D + E ++ L E GG A Sbjct: 244 CGSADEDLGFSKIHYGDNDGKTEGEGTADEVFDSDLVFSVTEFLGIVNELFEAFGGIA 301 >UniRef50_D0KZJ6 Putative exonuclease RdgC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZJ6_HALNC Length = 296 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 90/296 (30%), Positives = 139/296 (46%), Gaps = 7/296 (2%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++F+ L VYRL E + L F+P Q +GW +G + H + Sbjct: 1 MFFRQLSVYRLESECP-DFSTLNTALKEHPFSPTRPQQAESVGWQTAIG---EQYVHETD 56 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 G I ++EE+ +PS V++ + ++ + K EK +++D VL LLP+AF Sbjct: 57 GAARIVLQREERSVPSSVVRDMADQRLLARAGTTG-EPSKAEKIAMRDAVLLELLPQAFP 115 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 R S T ID N + D +A K E T LR+ +G +VP I L W+ Sbjct: 116 RQSNTQAIIDRKNQQVWFDTLTATKIERTSNQLREQIGQWRMVPFFGIQDISAHLASWLL 175 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 G+ GF + + A+L L E GG + K L + H+ G V +L L W+++I+ Sbjct: 176 -GTPPTGFDIGEGAKLVDLRE-GGTVTVSKLALPDPHVVAHLHEGMKVDQLELIWREQIR 233 Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 F + DG L ++K + L + +D Q+ DAD LM G L LIQ+L L Sbjct: 234 FTLRADGGLAKIKPTELLDTDDSGEMIDDADQQLDADQRLMVGALRQLIQDLANVL 289 >UniRef50_B0U148 Recombination associated protein n=19 Tax=Francisella RepID=B0U148_FRAP2 Length = 288 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 16/297 (5%) Query: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 ++FKNL ++++ + + E + +AF PC + + G+ P L N Sbjct: 1 MFFKNLTAFKIT---DINIDIFEDSMNKLAFIPCSNSQKSSRGFTNPFIKDEQCLFKF-N 56 Query: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 C EEKILP+ VI Q + I +LE R + K EK +K+++ LLP AFS Sbjct: 57 HLAAFCLLTEEKILPAQVINQQAQEYIQELELT--RYVSKKEKTQIKEDMEQKLLPLAFS 114 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 +F + ++D N +++D AS K+ + L LL + P+ E LTEW+ Sbjct: 115 KFRKIHGYLDLTNNYLIIDSASEKQITEVLDLLHRCEARF--EPVIKEE--TDILTEWLV 170 Query: 182 SGSAAQGFQLLDEAELKSLLEDG-GVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI 240 + ++ ++ +L S + D I + + ++ I + I++G +T+LA+ W++++ Sbjct: 171 EDTYPVDIEIAEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITELAITWKEKL 230 Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 K +KF D ++ D+++ED + D +LM A LI + + Sbjct: 231 AMTTNTKLQFKSIKFLDGIK----DLNKEDNVGH-EVDLLLMADIFAELITAMQSWI 282 >UniRef50_D1RMX8 Putative exonuclease n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX8_LEGLO Length = 232 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 2/216 (0%) Query: 83 ALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCA 142 LE K E R +++ E LK+E+ LLP+AFS + +IDT + ++ A Sbjct: 1 MLEEKNNAFELNHKRPMRRAEILQLKEEIKFDLLPKAFSVQKKDWFYIDTNKQWLFINSA 60 Query: 143 SAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRS-GSAAQGFQLLDEAELKSLL 201 + KA + + LL K+LGSL PL + + W+ S +G L L + Sbjct: 61 NPTKASEVITLLTKALGSLDAAPLMPNSDLSTLFARWLHQPTSFPEGLMLAKSYVLVTSG 120 Query: 202 EDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRD 261 ED K + EE+T ++ G V+ + L WQ+R+QFV+ ++ LKRLK D L + Sbjct: 121 EDKSYYTCKDIEENIEELTALLDQGYTVSSIELIWQERVQFVLNNNFLLKRLKCLDYLDE 180 Query: 262 QNEDIDREDFAQ-RFDADFILMTGELAALIQNLIEG 296 +D D++D Q +FDA+F L+TGEL LIQ L++ Sbjct: 181 AFKDKDKQDNDQEQFDANFSLLTGELRDLIQFLMDA 216 >UniRef50_A8TCH0 Recombination associated protein (Fragment) n=1 Tax=Vibrio sp. AND4 RepID=A8TCH0_9VIBR Length = 342 Score = 200 bits (508), Expect = 6e-50, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 122/313 (38%), Gaps = 19/313 (6%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 K Y L + + +EK+ P +G+V PM D L Sbjct: 1 KQCTPYYLP-AFAYSLDTLEKRFEEFRAKPLSDTGTESLGFVSPMCLSRDDLIIKLGCLY 59 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQA----RKLKKTEKDSLKDEVLHSLLPRAF 120 + +EK + +K+ + +++K+ E+ KL+ +K+E+L +P Sbjct: 60 GFRLKIQEKKISPSKVKEVVSQRVSKIMEEKPGLDQAKLENEYYGQVKEEILRLEIPSV- 118 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + +IDT +G + V+ S K+ L LLR SLGS +P+ E L+ + Sbjct: 119 ---NYVTAFIDTESGYLFVNDKSDKRCAQLLKLLRHSLGSFVALPVDTEYQPSDVLSRAL 175 Query: 181 RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDW---- 236 + F +D E + D + + + E+ + GK +T++ L + Sbjct: 176 QGEGKLSDFLRVDYYEQIKAVGDKATKQISFKGIQIEKDELEVLKGKSITQMGLVFCANE 235 Query: 237 --QQRIQFVMCDDGSLKRLKFCDELRDQNEDIDR--EDFAQRFDADFILMTGELAALIQN 292 I D L F + + + N DR F+A++++ L +I + Sbjct: 236 DETWAITIASKRDKYFYILNFVEPIPNSNLLADRLFSTCDDDFNANWLITADRLNRIIYS 295 Query: 293 LIEGLGG--EAQR 303 L E GG E+ R Sbjct: 296 LNESFGGRIESNR 308 >UniRef50_A3JHF7 Recombination associated protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JHF7_9ALTE Length = 321 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 121/297 (40%), Gaps = 16/297 (5%) Query: 8 MVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVP---PMGSHSDALTHVANGQI 64 ++ +S A ++ + C Q+ G+ G+ + T + NG+ Sbjct: 7 TLFAMSVAEVPSASQITRVGREYPVRECKFQEEKFWGFKSFDGKEGTDEEFATPLYNGRW 66 Query: 65 V-ICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 + + + I+P PV+++ + KI + + + +K +K++V +L +AF + Sbjct: 67 IHLQIANFKPIIPGPVVRRHVAEKIKEFTKQHGEEPGSKKKREIKEQVRDTLRQQAFQKE 126 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 + + D+ + ++ S + L +LR+ LGSLP VP+ + W+ Sbjct: 127 TIHQVIFDSKTNQVWLEATSETVQTEILRVLRRGLGSLPAVPVLEVANLPSIFAGWIAGE 186 Query: 184 -SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 +GF + D A+ + I + L + ++ + I ++V ++ L I Sbjct: 187 RDLPEGFHVGDSAKAIDPDDPKATITLTHEVLQAPDLQS-ILGTRMVKQMGLK-SANISA 244 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299 V+ D LK ++ ++ +D D L E++ L+ L +GG Sbjct: 245 VINDQSLLKSIRLS---------VETDDADADADHMMALWCTEISELLAMLRADIGG 292 >UniRef50_B7MW52 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=B7MW52_ECO81 Length = 355 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 129/296 (43%), Gaps = 19/296 (6%) Query: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 F+N +VYR + + +E L + ++ G + ++ +V + +T ++ G Sbjct: 56 FRNAIVYRATLP---SIQAIEGHLLELPYSEIGETEFSRSSFVE-NPVTGELVTPISGGY 111 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 ++ R ++KI+P V+ + ++I +E KLK+ E+ ++ D V L +AF + Sbjct: 112 AMV-IRHDQKIIPRHVVMKEANSRIQTIENMSGNKLKRAERLAIIDNVRVDLCKQAFVKS 170 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLS---MENPIELTLTEWV 180 + + T L++++ + A A+L K +GS+ ++ ++N + L ++ Sbjct: 171 TLILALYSTDEKLLVINTTNKIIAGMVCAMLIKVVGSVKTETINISDIKNGLTTRLNNYI 230 Query: 181 RS-GSAAQGFQLLDEAELKSLLEDGGVIRAKK-QDLTSEEITNHIEAGKVVTKLALDWQQ 238 +A +GF + + +L + +IR + E+ + + + K+ L Sbjct: 231 NGAANAFEGFTVGNYIQLSRYADQKEIIRYSAEHESIQSELADSLSSSFTADKMELS-GC 289 Query: 239 RIQFVMCDDGSLKRLK-----FCDELRDQNEDIDREDFAQ--RFDADFILMTGELA 287 + F++ ++ R+ F DE D+ + A +F LM L+ Sbjct: 290 GVTFILTENFHFSRINTQSQTFNDE-DDKAFQWRHQTGADLFQFSKVVNLMCDLLS 344 >UniRef50_A1U7Y4 DNA recombination-dependent growth factor C-like n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7Y4_MARAV Length = 290 Score = 186 bits (472), Expect = 9e-46, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 134/307 (43%), Gaps = 23/307 (7%) Query: 3 WFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGW-----VPPMGSHSDALT 57 K L +Y++ + EEME + C + + +G+ +P + Sbjct: 1 MIKQLRIYQIGDDNPPSIEEMEAVANNYPARECQHLEQSTIGFREFDTIPDTRVIQLEGS 60 Query: 58 HVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLP 117 H +++ ++ +P +++ L+ ++ + E+ ++ K + ++ E++ LP Sbjct: 61 HFIYAELLAF----KRSVPKSFLERELKKRVKQRESR-GEEVAKGDYKEIRAEIVREQLP 115 Query: 118 RAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLT 177 + + T + ++ + +S A+ + LLR++ + P+ +E+ L Sbjct: 116 KMPQSETVTPIVFQAISKHCWIGASSDGGADAAITLLRRAGLNFAFTPIFEGINMEMWLM 175 Query: 178 EW-VRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDW 236 EW ++ G L ++A++K LE I +DL E+ + + + + L L Sbjct: 176 EWMLQRQELPAGMILGEKAKIKDELEPKSTITINNEDLRDSELQA-VASSRSIAALELHC 234 Query: 237 QQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEG 296 +++ F++ DGSLK +K+ + +D +D A R A ++L+ E ++ L Sbjct: 235 -EKMTFMLHRDGSLKSIKY------EIQDDTFDDLAHR--AGYLLL--ETDNTLKTLFTA 283 Query: 297 LGGEAQR 303 +G A + Sbjct: 284 VGAPANQ 290 >UniRef50_Q7Y3W9 Recombination associated protein n=1 Tax=Yersinia phage PY54 RepID=Q7Y3W9_9CAUD Length = 325 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 60/322 (18%), Positives = 115/322 (35%), Gaps = 37/322 (11%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M FK + EI L A+ M + + AF + GW D ++ Sbjct: 6 MKMFK--TCFPYLTEIELPAD-MAELVEKKAFDGLTDSARSGFGWS---KIVPDVRMIIS 59 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF 120 +G+ ++ RK E++ ++Q +E + K E E + + + ++ A Sbjct: 60 DGRALLLYRKSERVENRAAVQQLVEERQKKAE-ENGIVVSDDLLREFEHTATNEIIRFAP 118 Query: 121 SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV 180 + + I V I V A+A K ED L+LLRK+LGSL P L++ + Sbjct: 119 LKTWSAYILICPVEKHIYVSAANAAKCEDALSLLRKTLGSLYATPWGFGGLEATVLSDHL 178 Query: 181 RSG-------SAAQGFQLLDEAELKSLLEDGGVI-RAKKQDLTSEEITNHIEAGKVVTKL 232 + + D + + S E + I +G + + Sbjct: 179 SCEAGKTNYYPLPDSLIISPFGKTIFTGSDSSLKGTFDGVGINSPEAKSLI-SGMKIRSV 237 Query: 233 ALDWQQRIQFVMCDDGSLKRL-KFCDELR---------------DQNEDIDREDFAQRFD 276 + + +R DG LK L +F + ++ + + +D + Sbjct: 238 EMAFVER-----PADGQLKNLAEFSLHIPANGNLHFKGYDYDNDERMSEEEADDAQHVYA 292 Query: 277 ADFILMTGELAALIQNLIEGLG 298 + +L+ +++NL G Sbjct: 293 VEMLLVASYTPQIMRNLATFFG 314 >UniRef50_D2K0C7 Recombination-associated protein n=1 Tax=Staphylococcus phage SA1 RepID=D2K0C7_9CAUD Length = 358 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 25/291 (8%) Query: 22 EMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKE--EKILPS-P 78 L + MG+ G I + E E++LP Sbjct: 53 AFSDALEKHEVSDPPEASYKTMGFAAYGEEVDSKFALAIPGTNAIVFQIEKRERVLPGVS 112 Query: 79 VIKQALEAKIAKLEAE-QARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLI 137 V + ++ A E E + + + + +KD+V +L A R S+ + + + Sbjct: 113 VRNEVVKRMAALREKEIEGWEPNRKDWAQMKDDVEAEMLKHAPIRPSRVNVILSAP--FV 170 Query: 138 MVDCASAKKAEDTLALLRKSLGSLPVV-PLSMENPIELTLTEWVRSGSAAQGFQLLDEAE 196 V +SAK AE+ AL+R +LG+ PV L E + + V G + Sbjct: 171 YVFTSSAKTAEECSALIRTALGTWPVEHLLPSEYELRQLMQRAVLGQQ--DGIKGDAFIH 228 Query: 197 LKSLLEDGGVIRAKKQDLTSEE-ITNHIEAGKVVTKLALDWQ------QRIQFVMCDDGS 249 LK +DG ++ K D+ +E + + + V L L+ + F + D Sbjct: 229 LK--HDDGDDVKMKDTDIFKDESVIDLLSRHWTVRALDLEVDTQCPGIDTVYFRLSDKAI 286 Query: 250 LKRLKFCDELRDQNEDIDREDFAQRFDAD---FILMTGELAALIQNLIEGL 297 L + + + + D + + +R+ D F+ M L L ++L + Sbjct: 287 LSGI----HIGEADVDANYDATLERYGTDGGQFLTMMANLFQLDKSLRAVI 333 >UniRef50_B6XBN9 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBN9_9ENTR Length = 300 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 107/292 (36%), Gaps = 23/292 (7%) Query: 14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEK 73 + AE +E L + F G++P + L G +I R +EK Sbjct: 13 KAELPNAEALENHLKELPFVDILESHSFSYGFIP--NKVTGELVTPIEGGYIINFRIDEK 70 Query: 74 ILPSPVIKQALEAKIAKLEAEQARKLKKTEKD--SLKDEVLHSLLPRAFSRFSQTMMWID 131 ILP I + +I KL+ + T+ +K + LL A ++ Sbjct: 71 ILPKAAIAFEINKRIEKLKEQ-----GITDYLVPEIKRMAIDELLKIALTKTKVITALYH 125 Query: 132 TVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM---ENPIELTLTEWVRSGSAAQ- 187 G + + + + L K G++ ++ +N I L+ + + S + Sbjct: 126 VSKGFLFISTTRKPDYQALVGSLVKVCGTVKTETFNIDDAKNGITTRLSNHIDNLSPEEC 185 Query: 188 ---GFQLLDEAELKSLLEDG-GVIRAKKQ-DLTSEEITNHIEAGKVVTKLALDWQQRIQF 242 + L+ ++ ++ + +L E++ + ++ V+ + L I F Sbjct: 186 FGHDLHPGNFILLQRKVDKKLETVKYDAELNLIREQVKDSLDNHFKVSLIELSTFDLI-F 244 Query: 243 VMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFIL-MTGELAALIQNL 293 + D+ K +K ++ D D+ + +A F+ M + LI+ L Sbjct: 245 KLTDNFDFKSIKPLAKIE---CDGDKAYRYRHTNAVFMFHMVNTIELLIELL 293 >UniRef50_A0LPT8 Conserved hypothetical cytosolic protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPT8_SYNFM Length = 389 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 46/325 (14%), Positives = 99/325 (30%), Gaps = 55/325 (16%) Query: 23 MEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDAL---THVANGQIVICARKEEKILPSPV 79 ++++L F G+ + ++ + R +++ +P V Sbjct: 27 VDEKLNEGMFKDPDDGQELAQGFTSWEDFFESSFPYGSYHKGEYLAFNFRIDQRKVPPIV 86 Query: 80 IKQALEAKIAK-LEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIM 138 +K+ + + K + + + + EK +++ V LL RA + + +T ++ Sbjct: 87 LKKYVREAVRKHRDENEGKWPARHEKIEIQENVRSWLLSRALFQPVACEVVWNTARKWLL 146 Query: 139 VDCASAKKAEDTLALLRKSLGSLPV-----------------------VPLSMENPIEL- 174 V SAK + L PV +++++P+ + Sbjct: 147 VGTTSAKLLDVFLTHFEDMFHMYPVPLYHVHWALNLLPLDGRQKDHLGSMITVQSPLAMD 206 Query: 175 -------TLTEWV--------RSGSAAQ---GFQLLDEAELKSLLEDGGVIRAKKQDLTS 216 W+ L + L E + Q + Sbjct: 207 EGRFLGYEFLTWLWFFVEHHGGRIEIPGKVAELHLGERFVLNKPGEGMERVVCTTQANSL 266 Query: 217 EEITNHIEAGKVVTKLALDW---QQRIQFVMCDDG-SLKRLKFCDELRDQNEDIDREDFA 272 E + GK+V ++ L F + + K LK Q D D+ED Sbjct: 267 HEARTGLRQGKMVHEIQLFLVVGDNEYTFTLDSALWTFKGLK----TPRQARDSDQEDQD 322 Query: 273 QRFDADFILMTGELAALIQNLIEGL 297 F + E+ +++ L Sbjct: 323 GEFLEKMFFL-EEVFSVLDVLYTRF 346 >UniRef50_D2L6Z2 Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L6Z2_9DELT Length = 319 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 101/301 (33%), Gaps = 43/301 (14%) Query: 2 LWFKN----LMVYRLSREISLRAEEMEKQLASMAFTPC-GSQDMAKMGWVP---PMGSHS 53 + FK L VY+ ++ + E L A G+ D G VP P+ S Sbjct: 1 MSFKRGTTALTVYQTTQAGQITGE----LLQRFALLSIDGTADERGQGLVPFDTPLDHAS 56 Query: 54 DALTH-VANGQIVICARKEEKILPSPVIKQALEA---KIAKLEAEQARK-LKKTEKDSLK 108 + A + C R + + +P+ V+K+ L K + + + K K +K Sbjct: 57 WPMAQNFAGQFALFCLRVDTRRIPAAVMKKHLAEAMSKEKEAMVADGKAFISKDRKREIK 116 Query: 109 DEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 D V LL R + + +D +G + + K + AL G V Sbjct: 117 DRVKLQLLARTEPAPAIVEVAVDRTSGRVFFGSTAIKMKDTFEALWFAMTGERLV----- 171 Query: 169 ENPIELTLTE--------WVRSGSAAQGFQLLDEAELKSLLEDGGVIR-------AKKQD 213 E E L + + + + G L + E+ +E IR D Sbjct: 172 EQTPETILEDPYGVGHGVALLTAAYNGGLHLDNGMEIV--VEKKATIRSATTTMAVTAVD 229 Query: 214 LTS--EEITNHIEAGKVVTKLALDWQ-QRIQFVMCDDGSLKRLKFCDELRDQNEDIDRED 270 L + E + K+ +++ + D + +K + + E+ D D Sbjct: 230 LDNVGEAVKQLTAVEITKAKIGIEYDGNSFDLTVTPDLGMTGIKLPKT-QPKAEEGDDPD 288 Query: 271 F 271 Sbjct: 289 A 289 >UniRef50_Q2LSX3 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSX3_SYNAS Length = 409 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 8 MVYRLSREISLRAEE-MEKQLASMAFTPCG-SQDMAKMGWVP---PMGSHSDALTHVANG 62 +YRL + +A++ + +QL + AF G + + MGW + + + ++ Sbjct: 44 SLYRLEGSLPQQADDFINQQLQAFAFRNIGLTSEEKAMGWTSLENVLDTDFEGAKYIWGD 103 Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARK-LKKTEKDSLKDEVLHSLLPRAFS 121 +++ R ++K +P ++K L AE +K + + +++ +++ V L + Sbjct: 104 YLMLALRVDKKTVPPSLLKIRLMEAEQDFLAETGQKRVYREQREDIRERVHLELFSKTPP 163 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 + +++ S K +D +++ SLP+ P + +P+ W+ Sbjct: 164 VPAFYEFCWSVSQKTLLLCTLSEKVIDDFQDFFKQTF-SLPLYPYTPWDPL------WL- 215 Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSE 217 L ++A L + G+ + L E Sbjct: 216 DEELTSRLSLAEKAGLPDAVGTAGLAAVDRTSLGRE 251 >UniRef50_C7LXS9 Putative uncharacterized protein n=5 Tax=Desulfovibrionales RepID=C7LXS9_DESBD Length = 209 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 11/180 (6%) Query: 7 LMVYRLSREISLRA--EEMEKQLASMAFTPCG-SQDMAKMGWVP---PMGSHSDALTHVA 60 L YR+ E + E++ +L AF S + GWV + Sbjct: 10 LTRYRIVEEDIPSSLWHEVDDRLKRNAFRDIDASAEERSFGWVSFDNMLDPDFALCPPEK 69 Query: 61 NGQIVICARKEEKILPSPVIKQA----LEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLL 116 + R + + +P V+K+ + + + + + L K +K ++++V L Sbjct: 70 GPYLTFTLRLDTRRVPPAVMKKHFAVAMNEAMRAMRDQGKKFLTKEQKTEIREQVELRLR 129 Query: 117 PRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTL 176 R + + DT + + +K E L + G L + PL+ L Sbjct: 130 ARTLPIPACFDVVWDTNRQTVWIASTQSKLTELFEELFTHTFG-LHLEPLTPYFQALNIL 188 >UniRef50_B8DP41 Putative uncharacterized protein n=2 Tax=Desulfovibrio RepID=B8DP41_DESVM Length = 205 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 14/190 (7%) Query: 2 LWFKNL----MVYRLSREISLRA-EEMEKQLASMAFTPCG-SQDMAKMGWVPPMGSHSDA 55 + F N +R++ + + +L F + D GWV A Sbjct: 1 MGFLNASNSFTRFRIADPVPATLWPTLPDKLKQFCFRDIDNTSDERSWGWVCFDDMLDTA 60 Query: 56 L---THVANGQIVICARKEEKILPSPVIKQALE---AKIAKLEAEQARK-LKKTEKDSLK 108 G I R++ + +P+ V+K+ L + EQ +K + + K LK Sbjct: 61 WRTAPPEKGGYIAFSLRQDTRRIPAAVLKKHLSLALREEEARNKEQGKKFISRERKKELK 120 Query: 109 DEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 ++ L+ R ++ + G+I +K + + L + PL+ Sbjct: 121 EQTRLRLMSRFLPIPAEFNVLWAIDTGIIYFASTQSKMIDLFSDYFTLTFD-LHLEPLTP 179 Query: 169 ENPIELTLTE 178 L E Sbjct: 180 YALAASMLDE 189 >UniRef50_B5E9U0 Putative uncharacterized protein n=8 Tax=Desulfuromonadales RepID=B5E9U0_GEOBB Length = 396 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 7/164 (4%) Query: 22 EMEKQLASMAFTPC-GSQDMAKMGWVP-PMGSHSDALTHVAN---GQIVICARKEEKILP 76 + KQLA+ F P + +GWV SD T A ++ R++++ +P Sbjct: 27 WVTKQLAANRFNPIDQGSEEMSIGWVHLDDPKASDFETPAACCREHYLMFTLRRDKRSVP 86 Query: 77 SPVIKQALEAKIAKLEAEQA--RKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVN 134 S ++K LE + AE K+ K +++ LK+ V LL + + DT + Sbjct: 87 SAILKAHLEKAQDEFLAENPGFTKVPKQKREDLKEAVQAMLLSQTLPTPATYDAVWDTRS 146 Query: 135 GLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTE 178 G++ S K E +K+ L V E L E Sbjct: 147 GILTFTSLSPKVIELFEEQFKKTFEGLRVSAFHPYARAENVLDE 190 >UniRef50_A6DPQ5 Hypothetical cytosolic protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPQ5_9BACT Length = 372 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 99/298 (33%), Gaps = 53/298 (17%) Query: 9 VYRLSREISLRAEEMEKQLASMAFTPCGSQ-DMAKMGWVPP--MGSHSDALTHVANGQIV 65 VYRL ++ E + + A A P D + GW + + T + + Sbjct: 12 VYRLDEDLP---ENILELFAENAALPLNQVKDESSNGWTARHLLERNFTEETCLIEDYVQ 68 Query: 66 ICARKEEKILPSPVIKQALEAKIAKLEAEQA-RKLKKTEKDSLKDEVLHSLLPRAFSRFS 124 + R E + +P++K + E+ + + K +K+ ++ LL Sbjct: 69 VHFRASELKVSAPILKAKCAQVEFQTMQEENLSGINRKRKKEIKENIIDELLAETQPTIK 128 Query: 125 QTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTL-------- 176 + +D N L+ V +SAK A+ LALL +S G P+ PL+ + + L Sbjct: 129 GFPLVLDPTNKLLYVGTSSAKSADSALALLVESTGLSPI-PLTPQTYMTEQLGSMASSYD 187 Query: 177 ----------------------TEWVRSGSAAQGFQLLDEAELKSLLED----------- 203 W S F + D ++ Sbjct: 188 SIKLTDSQEDAGETWPGRDFLTWLWYLSEYEEAEFTVPDLGVFAFSVDGPLNFITELNGA 247 Query: 204 GGVIRAKKQDLTSEEITNHIEAGKVVT--KLALDW-QQRIQFVMCDD-GSLKRLKFCD 257 + K S E + ++ GK + K+A+ F + D K +K D Sbjct: 248 RESVVKKGIPTLSPEADSALKDGKKLKTAKIAIARGDDTWTFTLDADFFCFKSMKLPD 305 >UniRef50_C0GT68 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GT68_9DELT Length = 204 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 10/183 (5%) Query: 6 NLMVYRLSREISLRA-EEMEKQLASMAFTPC-GSQDMAKMGWVP---PMGSHSDALTHVA 60 +L YR+ + E+ ++L S AF + D GWV + + + Sbjct: 9 SLTRYRIVENVPDELVSEVPQRLKSNAFREIDQTSDERSFGWVCFDDLLDNQWHTASPHK 68 Query: 61 NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQ---ARK-LKKTEKDSLKDEVLHSLL 116 + R + + +P V+K+ L + + EQ RK + + K +KD V +L+ Sbjct: 69 GHYLAFALRLDTRRIPPAVMKKYLRLALEEARREQESRGRKIVTRDHKAEIKDRVKQTLM 128 Query: 117 PRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTL 176 + + + D + L+ + S K + +S L + P + + Sbjct: 129 GKTLPVPAVFDVVWDVSSHLVYLGSVSPKVRQLFEDQFTQSFD-LSLEPQTPYFLAASLV 187 Query: 177 TEW 179 E Sbjct: 188 KEH 190 >UniRef50_B8J039 Putative uncharacterized protein n=8 Tax=Desulfovibrionales RepID=B8J039_DESDA Length = 207 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 14/190 (7%) Query: 2 LWFKN----LMVYRLSREISLRA-EEMEKQLASMAFTPCGSQ-DMAKMGWVPPMGSHSDA 55 + F N +R+ + ++ +L AF +M GWV Sbjct: 1 MGFANSACSFTRFRILDPVPAELWPQLPDKLKQFAFRDIDDIPEMQAQGWVCFEDMLDSE 60 Query: 56 LT---HVANGQIVICARKEEKILPSPVIKQALE---AKIAKLEAEQARK-LKKTEKDSLK 108 +V R + + +P+ V+K+ L K EQ + + + K LK Sbjct: 61 WFTAPPQKGAYLVFSLRLDMRRIPAGVVKKHLAVALRDEKKRMHEQGKTFISRERKKELK 120 Query: 109 DEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 ++V+ L R S+ + T I K + + K+ L + L+ Sbjct: 121 EQVMLRLRARFLPIPSEFNVLWATDRNEIWFASTQNKMIDLFMEEFLKTF-ELHLEQLTP 179 Query: 169 ENPIELTLTE 178 L E Sbjct: 180 YTLAASMLDE 189 >UniRef50_B8FCC1 Putative uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCC1_DESAA Length = 204 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 6/164 (3%) Query: 17 SLRAEEMEKQLASMAFTPCGS-QDMAKMGWVP---PMGSHSDALTHVANGQIVICARKEE 72 E + L GS +GW P + V IV R ++ Sbjct: 21 DPVLETIRNGLEKRTIMEYGSESQEKAVGWTSLERPYLPDLSGSSFVVGPHIVFSLRIDK 80 Query: 73 KILPSPVIKQALEAKIAKLEAEQARK-LKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWID 131 K LPS V+K + + +AE R L K EK +++ V L R + + + + Sbjct: 81 KTLPSKVVKMQCTIDMERRKAETGRDFLSKEEKKQIREHVELVLYSRIPATPNVYDILWN 140 Query: 132 TVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELT 175 ++ + E+ AL +S G + ++PL ELT Sbjct: 141 VEENMLWLFSTQGAVKEELEALFFESFG-VSLIPLFPFTEAELT 183 >UniRef50_A1AT82 Putative uncharacterized protein n=2 Tax=Desulfuromonadales RepID=A1AT82_PELPD Length = 389 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 9/178 (5%) Query: 6 NLMVYRLSREIS--LRAEEMEKQLASMAFTPC-GSQDMAKMGWV----PPMGSHSDALTH 58 ++ + +S +I + + +LA AF S D GW P Sbjct: 9 SITQFTISGDIPQKDQFDWFSGKLAGRAFQSIENSSDELSEGWTQVDHPDDSGFQLPSAF 68 Query: 59 VANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQA--RKLKKTEKDSLKDEVLHSLL 116 + +V R++++ +P+ V+K + A+ R+ K ++ +K++V L+ Sbjct: 69 WRDNYLVFSLRRDQRRIPAAVLKSHTAREEGAFLAQHPNLRRTPKDKRTEIKEQVQLRLM 128 Query: 117 PRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIEL 174 R + + D G++ + +K E + RKS L + + + Sbjct: 129 TRCLPVPATVDVVWDLKRGVLTLFSLGSKVVERFEDIFRKSFEGLHPLAIHPFARASM 186 >UniRef50_D1N7T1 Putative uncharacterized protein n=3 Tax=Bacteria RepID=D1N7T1_9BACT Length = 363 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 82/268 (30%), Gaps = 48/268 (17%) Query: 16 ISLRAEEMEKQLASMAFTPCGSQDMAK----MGWVPPMGSHSDALTHVA---NGQIVICA 68 + AE E L A G D +GWV + + G + Sbjct: 13 FDIPAELPENLLDLFAAKKAGPLDAVTDEPQLGWVTGHHLLDTTINEESAQMGGSYYLTL 72 Query: 69 RKEEKILPSPVIKQALEAKIAKLE-AEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTM 127 R+ + +P+ ++ + + A + + K +++E + + + S Sbjct: 73 RQAVRKMPASLLNAVCKREEQAYMRANELEYVSSKMKKQIREEAIEKHIQKMPPALSGIP 132 Query: 128 MWIDTVNGLIMVDCASAKKAEDTLALLRK---------------------SLGSLPVVPL 166 M ++ L+ V +S + + L + + ++ S P + + Sbjct: 133 MVLEPHERLLYVGASSRSQIDLFLDMFYQTVKVEPLQLSPALLLERLCNATMASFPTLTI 192 Query: 167 SMENPIE------LTLTEWVRSGSAA-------QGFQLLDEAELKSLLEDGG------VI 207 S E + W S + F L+ EA L + D I Sbjct: 193 SGRPDAEPVTGRDFLMWLWFYSETTGKLEVPDYGEFDLMIEAPLVFAVADDAQGAEEVTI 252 Query: 208 RAKKQDLTSEEITNHIEAGKVVTKLALD 235 + L S E I GK + K L Sbjct: 253 KKGDSPLRSSEAKAAILNGKKLKKAKLT 280 >UniRef50_A8ZU01 Conserved hypothetical cytosolic protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZU01_DESOH Length = 204 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 6/160 (3%) Query: 21 EEMEKQLASMAFTPCGSQ-DMAKMGWVP---PMGSHSDALTHVANGQIVICARKEEKILP 76 E +E+ L ++ +GW P + + + R ++K +P Sbjct: 25 ETVEQGLKQFTIRNIDNEPSDKAVGWTSFEAPFSADFSGASFSYGTYFLFSLRVDKKSIP 84 Query: 77 SPVIKQALEAKIAKLEAEQARKL-KKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNG 135 + V+ + + K + +K+ K EK +K++VLH L R + + +G Sbjct: 85 AKVVAKCCALEAEKRLKQTQQKVLAKNEKKQIKEKVLHDLALRIPATPGVFDLVWQYEDG 144 Query: 136 LIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELT 175 + E+ L K+ SL +V L +L Sbjct: 145 RLWFFSTQKGANEELETLFVKTF-SLRLVRLFPYTLADLA 183 >UniRef50_C0QIP8 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIP8_DESAH Length = 204 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 7/170 (4%) Query: 10 YRLSREISLRA-EEMEKQLASMAFTPCGSQ-DMAKMGWVP---PMGSHSDALTHVANGQI 64 YR+ EI E +++ L A + + +GW P P + + Sbjct: 13 YRVEGEIEESLVETIKEGLKKNAVSEIEDEYAEIAVGWTPFESPFDPDFEKFSFTFGTYF 72 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARK-LKKTEKDSLKDEVLHSLLPRAFSRF 123 V R ++K +PS ++++ + ++ K E R+ L K EK +KD + L+ + S Sbjct: 73 VFTLRIDKKSVPSKIVQKQVAMEVTKRLKESGREFLSKNEKTDIKDMITEKLMRQMPSIP 132 Query: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIE 173 + + + ++ K A + L L K+ L ++ L E Sbjct: 133 NMYDLLWIPEDHSLLFFTTQ-KAANEELETLFKTSFKLKLIRLFPFTMAE 181 >UniRef50_C8QY58 Putative uncharacterized protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QY58_9DELT Length = 232 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 11/175 (6%) Query: 10 YRLSREISLRAEEME-KQLASMAFTPCGSQ-DMAKMGWVP---PMGSHSDALTHVANGQI 64 Y + E+ + +++ + AF D +GWV + + Sbjct: 44 YAVEGEMPENFWDFAAQRIVAHAFRDIDDTFDEQSVGWVSLASMFDHDFSQGPYAVGDYL 103 Query: 65 VICARKEEKILPSPVIKQAL---EAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + R +E+ + + ++K+ E ++ K+ KL + +K +KD + LL ++F Sbjct: 104 AMSMRVDERKVAARILKKFCLKEEERLKKMHQVP--KLSRAQKIEIKDNMHLMLLKKSFP 161 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTL 176 + M + G I+ + K E L R + L ++ E L Sbjct: 162 APAVYDMCWNLAEGTILFFSGNQKAQETFEELFRNTF-ELGIILQPPYLAAEHLL 215 >UniRef50_Q1D7N9 Putative uncharacterized protein n=2 Tax=Cystobacterineae RepID=Q1D7N9_MYXXD Length = 214 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 15/196 (7%) Query: 7 LMVYRLSREISLRAE---EMEKQLASMAFTPCG--SQDMAKMGWVPPMGSHSDALT---H 58 L +R+ ++ + + L + AF P S++ +G+V S + Sbjct: 10 LSRFRVEPAKEAPSDVKRWLTRGLKAHAFEPIDRRSEEERAVGFVELENEESSEFSAGRL 69 Query: 59 VANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPR 118 + R + +P+ +K L A E E R + EK + E+ L R Sbjct: 70 YYGEYALFAFRIDTIKVPAAALKAELAKWAAAFEKENGRPPSRGEKTQSRGEIRQMLRTR 129 Query: 119 AFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALL-----RKSLGSLPVVPLSMENPIE 173 A R S + + + + AS K ++ L K G P E Sbjct: 130 ATPRTSTVDVSWNLKTQQVQIWSASRKVVDEITVALEGGLNVKFFGMTPSAMAQTAGIDE 189 Query: 174 LTL--TEWVRSGSAAQ 187 L T + Sbjct: 190 SLLGPTTELIGMDLPA 205 >UniRef50_B8J6K2 Putative uncharacterized protein n=4 Tax=Anaeromyxobacter RepID=B8J6K2_ANAD2 Length = 236 Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 8/157 (5%) Query: 10 YRLSREISLRAEE---MEKQLASMAFTPCG---SQDMAKMGWVPPMGS-HSDALTHVANG 62 +R ++ + + LA AF +D G+V +D + V G Sbjct: 38 FRAEIPAKRSSDTRRWLARGLAKGAFEALDVERGEDDRAAGFVSAEDPGVTDFTSGVLEG 97 Query: 63 QI-VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + + R + +P+ ++ L+ IA E E+ R K EK + KD + H+ RA Sbjct: 98 EWALFGFRVDTLRVPASAVRAELDRWIALHEKERGRPPTKGEKATQKDLIRHAHRQRAVP 157 Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSL 158 + + +G ++V AS K ++ A + +L Sbjct: 158 SSKVHDVSLHLGSGELLVWAASRKLVDEIAAAVEGAL 194 >UniRef50_Q6AQD2 Putative uncharacterized protein n=2 Tax=Deltaproteobacteria RepID=Q6AQD2_DESPS Length = 215 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 75/203 (36%), Gaps = 20/203 (9%) Query: 3 WFK------NLMVYRLSREISLR---AEEMEKQLASMAFTPCGSQ-DMAKMGWVP---PM 49 WF + R S E L + + ++ S AF D +GWV Sbjct: 12 WFSMGLLKGSASFVRFSVEGDLPENPLDFVADRVMSFAFRDIDDTYDEYSIGWVSINNMF 71 Query: 50 GSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAE-QARKLKKTEKDSLK 108 + +++ + + R +E+ + ++K+ ++ + +++ E Q K+ + K +K Sbjct: 72 DAKFKFASYIVGDYVTLTLRIDERRVSPAILKKCIQKEEERIKEEKQIPKIGRAMKVEIK 131 Query: 109 DEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM 168 + + LL ++ S + N ++ + K ++S G L + Sbjct: 132 ERIRSELLRKSVPIPSIFDVCWGMSNSTLLFFSTNKKMQAVLEDFFKESFG------LMI 185 Query: 169 ENPIELTLTEWVRSGSAAQGFQL 191 + I + E + S +L Sbjct: 186 KQQIPYVVAESLISEENQANLEL 208 >UniRef50_B7WYI4 DNA recombination-dependent growth factor C-like protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WYI4_COMTE Length = 167 Score = 83.8 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Query: 227 KVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGEL 286 K+ +KLA+ W R+ FV+ + +K + D + D N D FD D + TGEL Sbjct: 64 KLPSKLAMTWDDRVSFVLTEGLQIKNITLLDAVMDGNSKDDSG-----FDTDVAIATGEL 118 Query: 287 AALIQNLIEGLGGEAQ 302 ++L+ +LIE LGGE + Sbjct: 119 SSLLPDLIEALGGEGR 134 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 43 MGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT 102 MG VPP G L Q V+ E K+LP+ V+ + + K +E + RK K Sbjct: 1 MGRVPPRGEQHGPLVE----QRVMRFMTEAKVLPASVLNRKVNEKAEHIEKTEGRKPGKK 56 Query: 103 EKDSLKDEVLHSL 115 E+ LKD++ L Sbjct: 57 ERRELKDKLPSKL 69 >UniRef50_D0J5F2 Putative exonuclease, RdgC n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J5F2_COMTE Length = 98 Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 23/117 (19%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQI 64 K++++YR+++ + ++ L Q G P + Q Sbjct: 3 KSMIIYRIAKSWQDNLQVLDDAL----------QRQYSRGAARPTNA-------PLAEQW 45 Query: 65 VICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 + E K+LP+ V+ + + K + RK K E LKDE +LLP F+ Sbjct: 46 AMRFMTETKVLPASVLNRKVNEKANR------RKPGKKELRDLKDEPKLNLLPMVFT 96 >UniRef50_Q7WXD3 Putative uncharacterized protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WXD3_RALEH Length = 144 Score = 81.8 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 177 TEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDW 236 +W+ +A GF + E EL+S E +R + L +E + HI AGK T+LA+ W Sbjct: 1 MQWLAGDAAPSGFTVDQEIELQSGAESKATVRYVRHPLDAENLRRHIAAGKRCTRLAMTW 60 Query: 237 Q 237 Sbjct: 61 N 61 >UniRef50_D0LSM5 Putative uncharacterized protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSM5_HALO1 Length = 235 Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 5/135 (3%) Query: 22 EMEKQLASMAFTPCG--SQDMAKMGWVPPMGSHSDALTHVA---NGQIVICARKEEKILP 76 + + L + AF ++ G+V + L+ + + ++ R + P Sbjct: 46 WLSRGLRARAFEAIDRRGEEERSAGFVEHDNHDATELSAASVLRDAYVLAAWRVDTLKPP 105 Query: 77 SPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGL 136 +K L + A E R + EK + + L A + + Sbjct: 106 PAELKAELASWTAAYHEEHGRAPGRREKAEQRALLRQKLRSEATPVTKVFDLSWNIEAEE 165 Query: 137 IMVDCASAKKAEDTL 151 + + +S K ++ + Sbjct: 166 MKIWTSSRKVIDEIV 180 >UniRef50_UPI000045D917 COG2974: DNA recombination-dependent growth factor C n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D917 Length = 109 Score = 71.8 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 1 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA 60 M WFKNLM YRL++ + +E+QL AFTPCG DM+K GW P+ S SD+L Sbjct: 1 MFWFKNLMTYRLTQAVDFS--NLEEQLKQTAFTPCGKSDMSKFGWSAPL-SASDSLCFRQ 57 Query: 61 NGQIVICARK 70 +I + K Sbjct: 58 GSNTLIVSHK 67 >UniRef50_A9EY34 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EY34_SORC5 Length = 212 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 7/158 (4%) Query: 21 EEMEKQLASMAFTPCGSQD--MAKMGWVPPMGSHSDALTH---VANGQIVICARKEEKIL 75 ++ +++ AF P ++ + GW L H N I + R + + Sbjct: 25 DKFVERIRLRAFRPLTVEEDAEQRAGWCSIENPLDCELDHGKIFFNSYINLGLRTDRWQV 84 Query: 76 PSPVIKQALEAKIAKLEAEQAR-KLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVN 134 PS + K + A++ R KL + EK+ L+ V L + + + Sbjct: 85 PSALFKAHFAEAEREHLAKRGREKLGRREKEELRAVVSRKLRAQLMPVMKVVDLSWNLEA 144 Query: 135 GLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPI 172 G++ S + E L ++ L +VP S Sbjct: 145 GVVRFWNQSPRAHEGLSELFEETF-ELDLVPESPYTAA 181 >UniRef50_UPI00016C5061 hypothetical protein GobsU_21695 n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5061 Length = 388 Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 42/329 (12%), Positives = 88/329 (26%), Gaps = 73/329 (22%) Query: 35 CGSQDMAKMGWVPP---MGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKL 91 S D + GW + + ++ N + R + + LP +++ ++ L Sbjct: 41 IASADGVETGWTAGEHILDTDFGFEKNIINDTLNFELRVDTEKLPGDLLRAYTAVELKAL 100 Query: 92 EAEQARK-LKKTEKDSLKDEVLHSLLPRA----FSRFSQTMMWIDTVNGLIMVDCASAKK 146 + +K K+ L A + + + D ++ S + Sbjct: 101 SKDNPSGFASARQKREAKEIARQRLEQEAKDGRYRKRKCVPVLWDRQTNEVLFGATSLTQ 160 Query: 147 AEDTLALLRKSLG-SLPVVP-------------------------LSMENPI-------- 172 + +L ++ G L V Sbjct: 161 VDRLTSLFEQTFGHELECVTAGRRAYQLAELHSLTRSVDDAAPSAFVPNASPDIAWIADD 220 Query: 173 --------ELTLTEWVRSGSAAQGFQLLDEAE----------LKSLLEDGGVIRAKKQDL 214 E L W + + +LLD +E L+ G + Sbjct: 221 SSRDFIGNEFLLWLWYYTDIESDTLKLLDGSEVTLMLARTLNLECPRGQTGHETITHEGP 280 Query: 215 TS-EEITNHIEAGKVVTKLALDW---QQRIQFVMC-DDGSLKRLKFCDELRDQNEDIDRE 269 T E I++GK+ K+ L + + + + + K + + Sbjct: 281 TRLPEARRAIQSGKLPRKVGLTLVRNSDQYELTLHAETLGVGGAKLPPPDEGADARGKLD 340 Query: 270 DFAQRFDADFILMTGELAALIQNLIEGLG 298 D A + EL + L + G Sbjct: 341 DRANQL--------RELVQTLDLLYDAFG 361 >UniRef50_Q82WY9 Putative uncharacterized protein n=1 Tax=Nitrosomonas europaea RepID=Q82WY9_NITEU Length = 81 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 241 QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 ++ + LK D R+ E ++FD+ F LMT EL L+ L+E LGG Sbjct: 24 SHILDSNLQLKWSVLLDIDREPA-----ETAEEQFDSSFFLMTEELRQLLPELMEALGGT 78 Query: 301 AQR 303 A Sbjct: 79 ASE 81 >UniRef50_UPI0001698F3A hypothetical protein Epers_24033 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F3A Length = 72 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 88 IAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIM 138 + +E +A ++ + E+ ++DE+ LLP+AF++ S ID N I+ Sbjct: 1 MRAVEEAEAPRVSRKEQREMRDEITFELLPKAFTKSSYLHAMIDRSNRWIL 51 >UniRef50_A4NCR8 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A4NCR8_HAEIN Length = 322 Score = 46.0 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 36/274 (13%) Query: 5 KNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGS-HSDALTHVANGQ 63 K +Y +E G D + W + +T + NG Sbjct: 10 KQCEIYSAHFPTDDVISRVENMR--------GHSDKYFLRWETVTNPINGKKVTKLGNGN 61 Query: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 + E L +++ + + E E + K+EK + + +LL + Sbjct: 62 LFFSVHFEWLNLSKALLEHQIWQLKKRGENELGNVVGKSEK-EIVSKAKETLLEQDLPYS 120 Query: 124 SQT-MMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSM---ENPIELTLTEW 179 S+ + ++ + S +A ++ + ++ + + + + LT Sbjct: 121 SEIVNFFYCAETHHLITNSRSP-RARIAISNIVTNMSVVEFRTFVVSEEKLGLTAKLT-A 178 Query: 180 VRSGSAAQGFQL------------LDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGK 227 + + + L + E ++ L+ IR+ + E + ++ G Sbjct: 179 LLTENKPMFNHLHFANRTTLYLAQGEFNETRTYLD--CAIRSDDSA-SKERVIEALKNGY 235 Query: 228 VVTKLAL-DWQQR----IQFVMCDDGSLKRLKFC 256 V + L W + I F + + ++KF Sbjct: 236 RVQSIKLFSWNEEGKDDISFTLTSSLKINKIKFS 269 >UniRef50_C6A1F2 NusG transcription antitermination protein n=8 Tax=Thermococcaceae RepID=C6A1F2_THESM Length = 155 Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 11/120 (9%) Query: 108 KDEVLHSLL-PRAFSRFSQTMMWIDTV--NGLIMVDCASAKKAEDTLALLRKSLGSLPVV 164 ++E L+ +A + M + G I V+ ++ + +R + G+LP Sbjct: 18 QEENTAKLIYSKAKTYSLPIMAILSPSKVRGYIFVEATEKAAVDEVIRGIRHAKGTLP-- 75 Query: 165 PLSMENPIELTLTEWVRSGSAA-QGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHI 223 PI E A GF+ D EL + G + + D + +EI + Sbjct: 76 -----GPISFIEIEHFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 130 >UniRef50_C5S050 Putative uncharacterized protein n=1 Tax=Actinobacillus minor NM305 RepID=C5S050_9PAST Length = 47 Score = 41.8 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 27/39 (69%) Query: 259 LRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 + ++N+D+ +ED+ QRFDADFIL+ EL+ L + L Sbjct: 9 ITERNDDVLKEDYQQRFDADFILIVEELSQLFELLAAEF 47 >UniRef50_C5Z903 Putative uncharacterized protein Sb10g010770 n=1 Tax=Sorghum bicolor RepID=C5Z903_SORBI Length = 1181 Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 4/77 (5%) Query: 63 QIVICARKEEKILPSPVIKQALEAKIAKLEAEQARK---LKKTEKDSLKDEVLHSLLPRA 119 I+I +I+P K+ + K+ ++ ++ + EK L++ L+ Sbjct: 199 YILIHILVSTRIVPETF-KKKVTTKVNEILSKLGIPDVQSSRKEKKDLEEARKFILMLVT 257 Query: 120 FSRFSQTMMWIDTVNGL 136 F+ + + G Sbjct: 258 FAATATYQAGLSPPGGF 274 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.153 0.423 Lambda K H 0.267 0.0469 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,940,404,836 Number of Sequences: 3077464 Number of extensions: 83696390 Number of successful extensions: 322906 Number of sequences better than 1.0e-01: 96 Number of HSP's better than 0.1 without gapping: 225 Number of HSP's successfully gapped in prelim test: 32 Number of HSP's that attempted gapping in prelim test: 322320 Number of HSP's gapped (non-prelim): 263 length of query: 303 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 175 effective length of database: 646,480,964 effective search space: 113134168700 effective search space used: 113134168700 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 93 (40.2 bits)