BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (95 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A1WPU6 Phenylacetate-CoA oxygenase, PaaH subunit n=3 Ta... 144 1e-33 UniRef50_Q3JYC7 Phenylacetic acid degradation protein PaaB n=194... 134 7e-31 UniRef50_D2SED7 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 132 5e-30 UniRef50_B8HEH9 Phenylacetate-CoA oxygenase, PaaH subunit n=4 Ta... 116 2e-25 UniRef50_A1R9L0 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 114 7e-25 UniRef50_B1KMA8 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 104 1e-21 UniRef50_D0MIX3 Phenylacetate-CoA oxygenase, PaaH subunit n=1 Ta... 97 2e-19 UniRef50_A3KI27 Putative phenylacetic acid degradation protein n... 72 6e-12 UniRef50_C7PJU5 Phenylacetic acid degradation B n=1 Tax=Chitinop... 60 2e-08 UniRef50_Q1IX22 Phenylacetate-CoA oxygenase, PaaB subunit n=5 Ta... 52 5e-06 UniRef50_C0Z558 Putative phenylacetate degradation protein n=2 T... 47 2e-04 UniRef50_C8WU87 Phenylacetic acid degradation B n=2 Tax=Alicyclo... 45 8e-04 UniRef50_D2RY10 Phenylacetic acid degradation B n=4 Tax=Halobact... 45 8e-04 UniRef50_D1C840 Phenylacetic acid degradation B n=1 Tax=Sphaerob... 44 0.001 UniRef50_Q67LH6 Phenylacetic acid degradation protein n=1 Tax=Sy... 41 0.014 >UniRef50_A1WPU6 Phenylacetate-CoA oxygenase, PaaH subunit n=3 Tax=Bacteria RepID=A1WPU6_VEREI Length = 140 Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 60/90 (66%), Positives = 75/90 (83%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 WPL+EVFVR K GL HRH GSLHA+D RMAL++ARD YTRR EGCS+WVV++ +IVAS P Sbjct: 51 WPLWEVFVRSKAGLEHRHCGSLHASDARMALQHARDVYTRRQEGCSVWVVRSGQIVASDP 110 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 +++ +FDPA KVYRHP+FY +PD +EHM Sbjct: 111 DDKAMYFDPARDKVYRHPSFYRLPDAVEHM 140 >UniRef50_Q3JYC7 Phenylacetic acid degradation protein PaaB n=194 Tax=Bacteria RepID=Q3JYC7_BURP1 Length = 314 Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 60/93 (64%), Positives = 70/93 (75%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 N WP++EVFVR KQGL H+H GSLHAAD MAL ARD YTRR EG SIWVV ++ I A Sbjct: 222 NNEWPIWEVFVRSKQGLDHKHCGSLHAADASMALRMARDVYTRRREGVSIWVVPSAAITA 281 Query: 63 SQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 S P E+ E F+PA K+YRHPTFYT+PD + HM Sbjct: 282 SDPNEKAEMFEPAGDKIYRHPTFYTLPDEVNHM 314 >UniRef50_D2SED7 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Bacteria RepID=D2SED7_9ACTO Length = 123 Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 58/90 (64%), Positives = 73/90 (81%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 WPLYEVFVRGK+GL+H HVGSLHA D+ MA++ ARD YTRR+EG SIWVV+A++I AS P Sbjct: 34 WPLYEVFVRGKRGLNHVHVGSLHAPDDEMAIDAARDLYTRRNEGVSIWVVRAADITASSP 93 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 +E+ F P+ KVYRHPTFY IP+ + H+ Sbjct: 94 DEKDPLFAPSGDKVYRHPTFYEIPEDVPHI 123 >UniRef50_B8HEH9 Phenylacetate-CoA oxygenase, PaaH subunit n=4 Tax=Actinomycetales RepID=B8HEH9_ARTCA Length = 157 Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 53/90 (58%), Positives = 65/90 (72%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 W L+EVFVR +GLSH H GSLHA D MAL NARD YTRR+EG SIWVV A I AS P Sbjct: 68 WGLWEVFVRSSRGLSHVHAGSLHAPDAAMALRNARDLYTRRNEGVSIWVVPADAIAASDP 127 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 + +G FF+ + K YRH T+YT +G++H+ Sbjct: 128 DSKGSFFESPQGKDYRHATYYTKSEGVKHL 157 >UniRef50_A1R9L0 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Arthrobacter RepID=A1R9L0_ARTAT Length = 125 Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 52/90 (57%), Positives = 65/90 (72%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 W L+EVFVR +GLSH H GSLHA D MAL NARD YTRR+EG SIWVV A I +S P Sbjct: 36 WSLWEVFVRSSRGLSHVHAGSLHAPDAAMALRNARDLYTRRNEGVSIWVVPAEAISSSDP 95 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 + +G FF+ + K YRH T+YT +G++H+ Sbjct: 96 DSKGSFFESPQGKDYRHATYYTKSEGVKHL 125 >UniRef50_B1KMA8 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Proteobacteria RepID=B1KMA8_SHEWM Length = 100 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 46/88 (52%), Positives = 61/88 (69%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 LYEVF+R +GL H+H+GSLHA A+ ARD Y RRSEG SIWVVK+S++ +SQ + Sbjct: 13 LYEVFIRSARGLEHKHIGSLHAESAEQAITYARDVYIRRSEGLSIWVVKSSDVHSSQESD 72 Query: 68 RGEFFDPAESKVYRHPTFYTIPDGIEHM 95 F+DP + K YRH F +PD I++M Sbjct: 73 IAHFYDPMDDKPYRHAQFVQLPDAIKNM 100 >UniRef50_D0MIX3 Phenylacetate-CoA oxygenase, PaaH subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIX3_RHOM4 Length = 97 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/88 (48%), Positives = 59/88 (67%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 L+EVFV+ + G H H GS+ A MAL++ARD Y RR SIWVV I A++P + Sbjct: 10 LWEVFVQPRTGAPHEHAGSVRATHAEMALQHARDVYARRGPVVSIWVVPTDAIYATRPGD 69 Query: 68 RGEFFDPAESKVYRHPTFYTIPDGIEHM 95 G FFDPA++K YRHP FY +P G++++ Sbjct: 70 EGPFFDPADNKPYRHPLFYKVPHGVKNI 97 >UniRef50_A3KI27 Putative phenylacetic acid degradation protein n=3 Tax=Streptomyces RepID=A3KI27_STRAM Length = 103 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/79 (48%), Positives = 54/79 (68%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEER 68 +EVF+RG++GL+H+HVGS+ AA AL ARD YTRR E S+WVV++ + A+ P+ER Sbjct: 12 WEVFLRGRRGLAHQHVGSVRAAGPDAALAAARDLYTRRGEPLSLWVVRSDAVHAASPDER 71 Query: 69 GEFFDPAESKVYRHPTFYT 87 +F A K YR+P + Sbjct: 72 DPYFASARHKPYRYPEHFA 90 >UniRef50_C7PJU5 Phenylacetic acid degradation B n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJU5_CHIPD Length = 122 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 W ++EVF + K+G H HVG +HA D +AL A++ + RR + ++WVV++++I+A Sbjct: 29 WNVFEVFHQEKRGAHHEHVGCVHAPDANLALIFAKEQFGRRKKCVNLWVVRSADILAFDL 88 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGI 92 E+ + F K YR + + + + I Sbjct: 89 EDE-DMFANNPDKTYRDASGFKVMEKI 114 >UniRef50_Q1IX22 Phenylacetate-CoA oxygenase, PaaB subunit n=5 Tax=Deinococci RepID=Q1IX22_DEIGD Length = 192 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 + W +EVF + G ++ VGS+HA D AL AR+ + RR S+W V+ ++++ Sbjct: 6 DTQWSRWEVFKQDAPGKPYQAVGSVHAGDPDHALLTARNVFVRRPSAVSLWTVREADLLT 65 Query: 63 SQPEE 67 + P+E Sbjct: 66 ATPQE 70 >UniRef50_C0Z558 Putative phenylacetate degradation protein n=2 Tax=Paenibacillaceae RepID=C0Z558_BREBN Length = 110 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 MSN + +YEVF + SL A ++ +AL AR+ + RR ++WVVK +I Sbjct: 1 MSNENFFIYEVFSQKSVNAPFVQQFSLLAPNKEVALSMARENFLRREPCFNLWVVKRDDI 60 Query: 61 VASQPEERGEFFDPAESKVYRHPTFY 86 PEER F + ++K YR Y Sbjct: 61 FGLPPEERP-FLERLDNKSYRETKGY 85 >UniRef50_C8WU87 Phenylacetic acid degradation B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WU87_ALIAD Length = 125 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVAS 63 +YE+FV+ H HVGSL A AL+ AR+ + RR++ S+W V+ ++ A+ Sbjct: 22 VYEIFVQASDLDPHVHVGSLLAPSPEWALQLARENFLRRADAVSVWAVRRGDVHAT 77 >UniRef50_D2RY10 Phenylacetic acid degradation B n=4 Tax=Halobacteriaceae RepID=D2RY10_9EURY Length = 105 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 ++EVF + K G H H G++HA+D MA + A + RR S+WVV EI E+ Sbjct: 2 IWEVFRQEKTGQYHTHCGNVHASDREMARQFAAIQHGRRKPTNSLWVVPREEIGEIDSED 61 Query: 68 RGEFFDPAESKVYRHPTFYTI 88 F K YR T Y Sbjct: 62 VA--FGGTTDKSYRWATAYNT 80 >UniRef50_D1C840 Phenylacetic acid degradation B n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C840_SPHTD Length = 96 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 +YEVF + ++G HVG++ A + +A + AR+ Y+RR E +W+V + I EE Sbjct: 3 IYEVFRQEREGEPMVHVGNVQAPGDDLARQYAREVYSRRGEATRLWLVPRAAI-----EE 57 Query: 68 RGE--FFDPAESKVYRHPTFYTI 88 G+ F P + YR Y + Sbjct: 58 IGDAYFLRPPIERSYRMGEAYRV 80 >UniRef50_Q67LH6 Phenylacetic acid degradation protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67LH6_SYMTH Length = 116 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 +YE+FV+ H VGS+ A AL AR+++ RR SIW V+ S I + + Sbjct: 14 VYEIFVQKDHQSPHVWVGSVDAGSAEDALLLARESFLRRDPAVSIWAVEQSAIHRTDYAD 73 Query: 68 RGEFFDPAESKVYR 81 R +FF K YR Sbjct: 74 R-DFFARETDKRYR 86 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3JYC7 Phenylacetic acid degradation protein PaaB n=194... 147 1e-34 UniRef50_A1WPU6 Phenylacetate-CoA oxygenase, PaaH subunit n=3 Ta... 143 2e-33 UniRef50_D2SED7 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 137 1e-31 UniRef50_D0MIX3 Phenylacetate-CoA oxygenase, PaaH subunit n=1 Ta... 130 1e-29 UniRef50_B8HEH9 Phenylacetate-CoA oxygenase, PaaH subunit n=4 Ta... 129 3e-29 UniRef50_A1R9L0 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 126 2e-28 UniRef50_B1KMA8 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 125 5e-28 UniRef50_C7PJU5 Phenylacetic acid degradation B n=1 Tax=Chitinop... 124 7e-28 UniRef50_C0Z558 Putative phenylacetate degradation protein n=2 T... 110 2e-23 UniRef50_D2RY10 Phenylacetic acid degradation B n=4 Tax=Halobact... 104 1e-21 UniRef50_C8WU87 Phenylacetic acid degradation B n=2 Tax=Alicyclo... 93 3e-18 UniRef50_D1C840 Phenylacetic acid degradation B n=1 Tax=Sphaerob... 92 4e-18 UniRef50_Q1IX22 Phenylacetate-CoA oxygenase, PaaB subunit n=5 Ta... 92 5e-18 UniRef50_A3KI27 Putative phenylacetic acid degradation protein n... 91 1e-17 Sequences not found previously or not previously below threshold: UniRef50_A4IPM9 Phenylacetic acid oxygenase complex B n=12 Tax=B... 74 1e-12 UniRef50_Q67LH6 Phenylacetic acid degradation protein n=1 Tax=Sy... 74 1e-12 UniRef50_Q72K11 Phenylacetic acid degradation protein paaB n=3 T... 57 2e-07 UniRef50_C7NVW7 Putative uncharacterized protein n=2 Tax=Halobac... 45 0.001 UniRef50_Q3ISM3 Conserved pterin operon protein n=1 Tax=Natronom... 45 0.001 UniRef50_C1VEV8 Putative uncharacterized protein n=1 Tax=Halogeo... 43 0.003 UniRef50_D2RS31 Putative uncharacterized protein n=1 Tax=Haloter... 42 0.004 UniRef50_B9LR06 Putative uncharacterized protein n=1 Tax=Halorub... 42 0.009 UniRef50_B0R522 Putative uncharacterized protein n=2 Tax=Halobac... 42 0.009 UniRef50_C7NTT1 Putative uncharacterized protein n=1 Tax=Halorha... 42 0.009 UniRef50_A0Z3K3 Putative uncharacterized protein n=1 Tax=marine ... 40 0.019 >UniRef50_Q3JYC7 Phenylacetic acid degradation protein PaaB n=194 Tax=Bacteria RepID=Q3JYC7_BURP1 Length = 314 Score = 147 bits (370), Expect = 1e-34, Method: Composition-based stats. Identities = 60/93 (64%), Positives = 70/93 (75%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 N WP++EVFVR KQGL H+H GSLHAAD MAL ARD YTRR EG SIWVV ++ I A Sbjct: 222 NNEWPIWEVFVRSKQGLDHKHCGSLHAADASMALRMARDVYTRRREGVSIWVVPSAAITA 281 Query: 63 SQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 S P E+ E F+PA K+YRHPTFYT+PD + HM Sbjct: 282 SDPNEKAEMFEPAGDKIYRHPTFYTLPDEVNHM 314 >UniRef50_A1WPU6 Phenylacetate-CoA oxygenase, PaaH subunit n=3 Tax=Bacteria RepID=A1WPU6_VEREI Length = 140 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 60/95 (63%), Positives = 77/95 (81%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 + + WPL+EVFVR K GL HRH GSLHA+D RMAL++ARD YTRR EGCS+WVV++ +I Sbjct: 46 IDSADWPLWEVFVRSKAGLEHRHCGSLHASDARMALQHARDVYTRRQEGCSVWVVRSGQI 105 Query: 61 VASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 VAS P+++ +FDPA KVYRHP+FY +PD +EHM Sbjct: 106 VASDPDDKAMYFDPARDKVYRHPSFYRLPDAVEHM 140 >UniRef50_D2SED7 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Bacteria RepID=D2SED7_9ACTO Length = 123 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 58/91 (63%), Positives = 73/91 (80%) Query: 5 YWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQ 64 WPLYEVFVRGK+GL+H HVGSLHA D+ MA++ ARD YTRR+EG SIWVV+A++I AS Sbjct: 33 DWPLYEVFVRGKRGLNHVHVGSLHAPDDEMAIDAARDLYTRRNEGVSIWVVRAADITASS 92 Query: 65 PEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 P+E+ F P+ KVYRHPTFY IP+ + H+ Sbjct: 93 PDEKDPLFAPSGDKVYRHPTFYEIPEDVPHI 123 >UniRef50_D0MIX3 Phenylacetate-CoA oxygenase, PaaH subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIX3_RHOM4 Length = 97 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 59/88 (67%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 L+EVFV+ + G H H GS+ A MAL++ARD Y RR SIWVV I A++P + Sbjct: 10 LWEVFVQPRTGAPHEHAGSVRATHAEMALQHARDVYARRGPVVSIWVVPTDAIYATRPGD 69 Query: 68 RGEFFDPAESKVYRHPTFYTIPDGIEHM 95 G FFDPA++K YRHP FY +P G++++ Sbjct: 70 EGPFFDPADNKPYRHPLFYKVPHGVKNI 97 >UniRef50_B8HEH9 Phenylacetate-CoA oxygenase, PaaH subunit n=4 Tax=Actinomycetales RepID=B8HEH9_ARTCA Length = 157 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 53/90 (58%), Positives = 65/90 (72%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 W L+EVFVR +GLSH H GSLHA D MAL NARD YTRR+EG SIWVV A I AS P Sbjct: 68 WGLWEVFVRSSRGLSHVHAGSLHAPDAAMALRNARDLYTRRNEGVSIWVVPADAIAASDP 127 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 + +G FF+ + K YRH T+YT +G++H+ Sbjct: 128 DSKGSFFESPQGKDYRHATYYTKSEGVKHL 157 >UniRef50_A1R9L0 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Arthrobacter RepID=A1R9L0_ARTAT Length = 125 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 52/90 (57%), Positives = 65/90 (72%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 W L+EVFVR +GLSH H GSLHA D MAL NARD YTRR+EG SIWVV A I +S P Sbjct: 36 WSLWEVFVRSSRGLSHVHAGSLHAPDAAMALRNARDLYTRRNEGVSIWVVPAEAISSSDP 95 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 + +G FF+ + K YRH T+YT +G++H+ Sbjct: 96 DSKGSFFESPQGKDYRHATYYTKSEGVKHL 125 >UniRef50_B1KMA8 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Proteobacteria RepID=B1KMA8_SHEWM Length = 100 Score = 125 bits (313), Expect = 5e-28, Method: Composition-based stats. Identities = 46/88 (52%), Positives = 61/88 (69%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 LYEVF+R +GL H+H+GSLHA A+ ARD Y RRSEG SIWVVK+S++ +SQ + Sbjct: 13 LYEVFIRSARGLEHKHIGSLHAESAEQAITYARDVYIRRSEGLSIWVVKSSDVHSSQESD 72 Query: 68 RGEFFDPAESKVYRHPTFYTIPDGIEHM 95 F+DP + K YRH F +PD I++M Sbjct: 73 IAHFYDPMDDKPYRHAQFVQLPDAIKNM 100 >UniRef50_C7PJU5 Phenylacetic acid degradation B n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJU5_CHIPD Length = 122 Score = 124 bits (312), Expect = 7e-28, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 4 VYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVAS 63 W ++EVF + K+G H HVG +HA D +AL A++ + RR + ++WVV++++I+A Sbjct: 27 ENWNVFEVFHQEKRGAHHEHVGCVHAPDANLALIFAKEQFGRRKKCVNLWVVRSADILAF 86 Query: 64 QPEERGEFFDPAESKVYRHPTFYTIPDGIE 93 E+ + F K YR + + + + I Sbjct: 87 DLEDE-DMFANNPDKTYRDASGFKVMEKIN 115 >UniRef50_C0Z558 Putative phenylacetate degradation protein n=2 Tax=Paenibacillaceae RepID=C0Z558_BREBN Length = 110 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 MSN + +YEVF + SL A ++ +AL AR+ + RR ++WVVK +I Sbjct: 1 MSNENFFIYEVFSQKSVNAPFVQQFSLLAPNKEVALSMARENFLRREPCFNLWVVKRDDI 60 Query: 61 VASQPEERGEFFDPAESKVYRHPTFY 86 PEER F + ++K YR Y Sbjct: 61 FGLPPEER-PFLERLDNKSYRETKGY 85 >UniRef50_D2RY10 Phenylacetic acid degradation B n=4 Tax=Halobacteriaceae RepID=D2RY10_9EURY Length = 105 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 ++EVF + K G H H G++HA+D MA + A + RR S+WVV EI E+ Sbjct: 2 IWEVFRQEKTGQYHTHCGNVHASDREMARQFAAIQHGRRKPTNSLWVVPREEIGEIDSED 61 Query: 68 RGEFFDPAESKVYRHPTFYTI 88 F K YR T Y Sbjct: 62 VA--FGGTTDKSYRWATAYNT 80 >UniRef50_C8WU87 Phenylacetic acid degradation B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WU87_ALIAD Length = 125 Score = 92.8 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 + + +YE+FV+ H HVGSL A AL+ AR+ + RR++ S+W V+ ++ A Sbjct: 17 DTSYDVYEIFVQASDLDPHVHVGSLLAPSPEWALQLARENFLRRADAVSVWAVRRGDVHA 76 Query: 63 SQPEERGEFFDPAESKVYRHPTFYT 87 + + ++F + YR + Y+ Sbjct: 77 TP--DDPDWFAREFDRKYRDVSGYS 99 >UniRef50_D1C840 Phenylacetic acid degradation B n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C840_SPHTD Length = 96 Score = 92.4 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 +YEVF + ++G HVG++ A + +A + AR+ Y+RR E +W+V + I EE Sbjct: 3 IYEVFRQEREGEPMVHVGNVQAPGDDLARQYAREVYSRRGEATRLWLVPRAAI-----EE 57 Query: 68 RGE--FFDPAESKVYRHPTFYTI 88 G+ F P + YR Y + Sbjct: 58 IGDAYFLRPPIERSYRMGEAYRV 80 >UniRef50_Q1IX22 Phenylacetate-CoA oxygenase, PaaB subunit n=5 Tax=Deinococci RepID=Q1IX22_DEIGD Length = 192 Score = 92.0 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 + W +EVF + G ++ VGS+HA D AL AR+ + RR S+W V+ ++++ Sbjct: 6 DTQWSRWEVFKQDAPGKPYQAVGSVHAGDPDHALLTARNVFVRRPSAVSLWTVREADLLT 65 Query: 63 SQPEE 67 + P+E Sbjct: 66 ATPQE 70 Score = 39.3 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 24 VGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQ--PEERGEFFDPAESKVYR 81 VG+L A AL AR+ Y + + + S +V + P +F PA+ K Y+ Sbjct: 105 VGTLEAKGPGDALRQAREQY---PDALTWLIFPESAVVRTDDDPGTLESWFAPAKDKTYK 161 Query: 82 HPTFYTI 88 +Y + Sbjct: 162 QQQYYGV 168 >UniRef50_A3KI27 Putative phenylacetic acid degradation protein n=3 Tax=Streptomyces RepID=A3KI27_STRAM Length = 103 Score = 90.9 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 38/79 (48%), Positives = 54/79 (68%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEER 68 +EVF+RG++GL+H+HVGS+ AA AL ARD YTRR E S+WVV++ + A+ P+ER Sbjct: 12 WEVFLRGRRGLAHQHVGSVRAAGPDAALAAARDLYTRRGEPLSLWVVRSDAVHAASPDER 71 Query: 69 GEFFDPAESKVYRHPTFYT 87 +F A K YR+P + Sbjct: 72 DPYFASARHKPYRYPEHFA 90 >UniRef50_A4IPM9 Phenylacetic acid oxygenase complex B n=12 Tax=Bacillales RepID=A4IPM9_GEOTN Length = 119 Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 + ++EVF R +H SL A +E +AL A++ + RR +WVVK I Sbjct: 11 YQVFEVFSRRTPEAPLQHQFSLLAPNEELALVMAQENFMRREPVADLWVVKRDYIRRINE 70 Query: 66 EERGEFFDPAESKVYRHPTFY 86 EE+ ++K YR Y Sbjct: 71 EEKVA-LKRLDNKDYRLTRGY 90 >UniRef50_Q67LH6 Phenylacetic acid degradation protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67LH6_SYMTH Length = 116 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 + +YE+FV+ H VGS+ A AL AR+++ RR SIW V+ S I + Sbjct: 12 FRVYEIFVQKDHQSPHVWVGSVDAGSAEDALLLARESFLRRDPAVSIWAVEQSAIHRTDY 71 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDG 91 +R +FF K YR Y + Sbjct: 72 ADR-DFFARETDKRYRTLAGYRESNA 96 >UniRef50_Q72K11 Phenylacetic acid degradation protein paaB n=3 Tax=Thermus RepID=Q72K11_THET2 Length = 175 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 M WP +EV + + + VGS+HA D AL AR + RR +++V A Sbjct: 1 MWGTEWPRFEVIKQDTERSLPQMVGSVHATDPEHALLVARHVFVRRPSAYALFVAPAEAF 60 Query: 61 VASQPE 66 E Sbjct: 61 FHVTQE 66 >UniRef50_C7NVW7 Putative uncharacterized protein n=2 Tax=Halobacteriaceae RepID=C7NVW7_HALMD Length = 89 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPE 66 +E+FVR + H GS+ A +A E AR + +E +W+ A + Q E Sbjct: 21 WELFVREHESDPLTHAGSVSAPSADIAREQARQLFDWSAEA--LWLCPAEAVERCQTE 76 >UniRef50_Q3ISM3 Conserved pterin operon protein n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3ISM3_NATPD Length = 102 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 +E+FVR RHVGS+ A D A E A + +E +WV ++++ E Sbjct: 22 WELFVRSDSEDPLRHVGSVRAPDADGAYELACRLFAWYAE--DVWVCPSADVTRYTTTE 78 >UniRef50_C1VEV8 Putative uncharacterized protein n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VEV8_9EURY Length = 114 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 +EVFVR + RHVGS+ A +A E A + IWV A + Sbjct: 37 WEVFVREDDDDALRHVGSVSAPSADIAYEQATKLFG--WYANDIWVCPADAV 86 >UniRef50_D2RS31 Putative uncharacterized protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RS31_9EURY Length = 126 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIV 61 +EVF+R + G RHVGS+ A E A E+A + +W+ A + Sbjct: 22 WEVFLREEPGDPLRHVGSVAAGSESEAHEHASRLFG--WYAVDVWLCPADAVG 72 >UniRef50_B9LR06 Putative uncharacterized protein n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LR06_HALLT Length = 124 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIV----AS 63 +EVFVR ++ RHVG++ A A A + + +WV A E S Sbjct: 21 RFEVFVREREADPLRHVGTVTAPTPDAAHGEASKLFAWYAR--DVWVCPADETHRYSAGS 78 Query: 64 QPEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 +E E+ P Y +G + Sbjct: 79 LADEESGEAAGDENPDADEPRVYEETEGTPTV 110 >UniRef50_B0R522 Putative uncharacterized protein n=2 Tax=Halobacterium salinarum RepID=B0R522_HALS3 Length = 83 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASE 59 +EVFVR +HVGS+ A A E+A + SIWV A E Sbjct: 20 WEVFVRADADAPLKHVGSVTAGTADTAHEHASSLFD--WVARSIWVCPADE 68 >UniRef50_C7NTT1 Putative uncharacterized protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NTT1_HALUD Length = 85 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEER 68 +EVFVR RHVGS+ A ++ A E A + + ++W+ S + E Sbjct: 23 WEVFVRETVEDPLRHVGSVTADEKATAREQAESLF---GDVVTVWLCPGSAVARYPDPEL 79 Query: 69 GE 70 Sbjct: 80 LP 81 >UniRef50_A0Z3K3 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3K3_9GAMM Length = 81 Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 5 YWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWV 54 W +EVF R + H+GS+ A + A+ AR Y+ + WV Sbjct: 14 DWDYFEVFAREELDGPLFHLGSVSAPNRAAAVGQARMVYSEKP-----WV 58 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3JYC7 Phenylacetic acid degradation protein PaaB n=194... 139 3e-32 UniRef50_A1WPU6 Phenylacetate-CoA oxygenase, PaaH subunit n=3 Ta... 134 9e-31 UniRef50_D2SED7 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 129 2e-29 UniRef50_D0MIX3 Phenylacetate-CoA oxygenase, PaaH subunit n=1 Ta... 125 3e-28 UniRef50_B8HEH9 Phenylacetate-CoA oxygenase, PaaH subunit n=4 Ta... 123 1e-27 UniRef50_C7PJU5 Phenylacetic acid degradation B n=1 Tax=Chitinop... 121 9e-27 UniRef50_A1R9L0 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 121 9e-27 UniRef50_B1KMA8 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Ta... 118 7e-26 UniRef50_C0Z558 Putative phenylacetate degradation protein n=2 T... 106 2e-22 UniRef50_C8WU87 Phenylacetic acid degradation B n=2 Tax=Alicyclo... 99 5e-20 UniRef50_D2RY10 Phenylacetic acid degradation B n=4 Tax=Halobact... 97 2e-19 UniRef50_Q67LH6 Phenylacetic acid degradation protein n=1 Tax=Sy... 95 8e-19 UniRef50_A4IPM9 Phenylacetic acid oxygenase complex B n=12 Tax=B... 94 1e-18 UniRef50_Q1IX22 Phenylacetate-CoA oxygenase, PaaB subunit n=5 Ta... 91 1e-17 UniRef50_D1C840 Phenylacetic acid degradation B n=1 Tax=Sphaerob... 89 6e-17 UniRef50_A3KI27 Putative phenylacetic acid degradation protein n... 85 7e-16 UniRef50_Q72K11 Phenylacetic acid degradation protein paaB n=3 T... 83 3e-15 UniRef50_Q3ISM3 Conserved pterin operon protein n=1 Tax=Natronom... 68 1e-10 UniRef50_C7NVW7 Putative uncharacterized protein n=2 Tax=Halobac... 64 2e-09 Sequences not found previously or not previously below threshold: UniRef50_C1VEV8 Putative uncharacterized protein n=1 Tax=Halogeo... 60 3e-08 UniRef50_B9LR06 Putative uncharacterized protein n=1 Tax=Halorub... 58 1e-07 UniRef50_D2RS31 Putative uncharacterized protein n=1 Tax=Haloter... 56 4e-07 UniRef50_B0R522 Putative uncharacterized protein n=2 Tax=Halobac... 53 2e-06 UniRef50_C7NTT1 Putative uncharacterized protein n=1 Tax=Halorha... 51 1e-05 UniRef50_A0Z3K3 Putative uncharacterized protein n=1 Tax=marine ... 46 4e-04 >UniRef50_Q3JYC7 Phenylacetic acid degradation protein PaaB n=194 Tax=Bacteria RepID=Q3JYC7_BURP1 Length = 314 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 60/93 (64%), Positives = 70/93 (75%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 N WP++EVFVR KQGL H+H GSLHAAD MAL ARD YTRR EG SIWVV ++ I A Sbjct: 222 NNEWPIWEVFVRSKQGLDHKHCGSLHAADASMALRMARDVYTRRREGVSIWVVPSAAITA 281 Query: 63 SQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 S P E+ E F+PA K+YRHPTFYT+PD + HM Sbjct: 282 SDPNEKAEMFEPAGDKIYRHPTFYTLPDEVNHM 314 >UniRef50_A1WPU6 Phenylacetate-CoA oxygenase, PaaH subunit n=3 Tax=Bacteria RepID=A1WPU6_VEREI Length = 140 Score = 134 bits (337), Expect = 9e-31, Method: Composition-based stats. Identities = 60/95 (63%), Positives = 77/95 (81%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 + + WPL+EVFVR K GL HRH GSLHA+D RMAL++ARD YTRR EGCS+WVV++ +I Sbjct: 46 IDSADWPLWEVFVRSKAGLEHRHCGSLHASDARMALQHARDVYTRRQEGCSVWVVRSGQI 105 Query: 61 VASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 VAS P+++ +FDPA KVYRHP+FY +PD +EHM Sbjct: 106 VASDPDDKAMYFDPARDKVYRHPSFYRLPDAVEHM 140 >UniRef50_D2SED7 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Bacteria RepID=D2SED7_9ACTO Length = 123 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 58/91 (63%), Positives = 73/91 (80%) Query: 5 YWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQ 64 WPLYEVFVRGK+GL+H HVGSLHA D+ MA++ ARD YTRR+EG SIWVV+A++I AS Sbjct: 33 DWPLYEVFVRGKRGLNHVHVGSLHAPDDEMAIDAARDLYTRRNEGVSIWVVRAADITASS 92 Query: 65 PEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 P+E+ F P+ KVYRHPTFY IP+ + H+ Sbjct: 93 PDEKDPLFAPSGDKVYRHPTFYEIPEDVPHI 123 >UniRef50_D0MIX3 Phenylacetate-CoA oxygenase, PaaH subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIX3_RHOM4 Length = 97 Score = 125 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 59/89 (66%) Query: 7 PLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPE 66 L+EVFV+ + G H H GS+ A MAL++ARD Y RR SIWVV I A++P Sbjct: 9 RLWEVFVQPRTGAPHEHAGSVRATHAEMALQHARDVYARRGPVVSIWVVPTDAIYATRPG 68 Query: 67 ERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 + G FFDPA++K YRHP FY +P G++++ Sbjct: 69 DEGPFFDPADNKPYRHPLFYKVPHGVKNI 97 >UniRef50_B8HEH9 Phenylacetate-CoA oxygenase, PaaH subunit n=4 Tax=Actinomycetales RepID=B8HEH9_ARTCA Length = 157 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 53/94 (56%), Positives = 65/94 (69%) Query: 2 SNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIV 61 W L+EVFVR +GLSH H GSLHA D MAL NARD YTRR+EG SIWVV A I Sbjct: 64 DRSAWGLWEVFVRSSRGLSHVHAGSLHAPDAAMALRNARDLYTRRNEGVSIWVVPADAIA 123 Query: 62 ASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 AS P+ +G FF+ + K YRH T+YT +G++H+ Sbjct: 124 ASDPDSKGSFFESPQGKDYRHATYYTKSEGVKHL 157 >UniRef50_C7PJU5 Phenylacetic acid degradation B n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJU5_CHIPD Length = 122 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 W ++EVF + K+G H HVG +HA D +AL A++ + RR + ++WVV++++I+A Sbjct: 26 GENWNVFEVFHQEKRGAHHEHVGCVHAPDANLALIFAKEQFGRRKKCVNLWVVRSADILA 85 Query: 63 SQPEERGEFFDPAESKVYRHPTFYTIPDGIE 93 E+ + F K YR + + + + I Sbjct: 86 FDLEDE-DMFANNPDKTYRDASGFKVMEKIN 115 >UniRef50_A1R9L0 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Arthrobacter RepID=A1R9L0_ARTAT Length = 125 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 52/90 (57%), Positives = 65/90 (72%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 W L+EVFVR +GLSH H GSLHA D MAL NARD YTRR+EG SIWVV A I +S P Sbjct: 36 WSLWEVFVRSSRGLSHVHAGSLHAPDAAMALRNARDLYTRRNEGVSIWVVPAEAISSSDP 95 Query: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 + +G FF+ + K YRH T+YT +G++H+ Sbjct: 96 DSKGSFFESPQGKDYRHATYYTKSEGVKHL 125 >UniRef50_B1KMA8 Phenylacetate-CoA oxygenase, PaaH subunit n=2 Tax=Proteobacteria RepID=B1KMA8_SHEWM Length = 100 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 46/88 (52%), Positives = 61/88 (69%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 LYEVF+R +GL H+H+GSLHA A+ ARD Y RRSEG SIWVVK+S++ +SQ + Sbjct: 13 LYEVFIRSARGLEHKHIGSLHAESAEQAITYARDVYIRRSEGLSIWVVKSSDVHSSQESD 72 Query: 68 RGEFFDPAESKVYRHPTFYTIPDGIEHM 95 F+DP + K YRH F +PD I++M Sbjct: 73 IAHFYDPMDDKPYRHAQFVQLPDAIKNM 100 >UniRef50_C0Z558 Putative phenylacetate degradation protein n=2 Tax=Paenibacillaceae RepID=C0Z558_BREBN Length = 110 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 MSN + +YEVF + SL A ++ +AL AR+ + RR ++WVVK +I Sbjct: 1 MSNENFFIYEVFSQKSVNAPFVQQFSLLAPNKEVALSMARENFLRREPCFNLWVVKRDDI 60 Query: 61 VASQPEERGEFFDPAESKVYRHPTFY 86 PEER F + ++K YR Y Sbjct: 61 FGLPPEER-PFLERLDNKSYRETKGY 85 >UniRef50_C8WU87 Phenylacetic acid degradation B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WU87_ALIAD Length = 125 Score = 98.9 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 + + +YE+FV+ H HVGSL A AL+ AR+ + RR++ S+W V+ ++ A Sbjct: 17 DTSYDVYEIFVQASDLDPHVHVGSLLAPSPEWALQLARENFLRRADAVSVWAVRRGDVHA 76 Query: 63 SQPEERGEFFDPAESKVYRHPTFYT 87 + + ++F + YR + Y+ Sbjct: 77 TP--DDPDWFAREFDRKYRDVSGYS 99 >UniRef50_D2RY10 Phenylacetic acid degradation B n=4 Tax=Halobacteriaceae RepID=D2RY10_9EURY Length = 105 Score = 97.0 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 8 LYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 ++EVF + K G H H G++HA+D MA + A + RR S+WVV EI E+ Sbjct: 2 IWEVFRQEKTGQYHTHCGNVHASDREMARQFAAIQHGRRKPTNSLWVVPREEIGEIDSED 61 Query: 68 RGEFFDPAESKVYRHPTFYTI 88 F K YR T Y Sbjct: 62 VA--FGGTTDKSYRWATAYNT 80 >UniRef50_Q67LH6 Phenylacetic acid degradation protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67LH6_SYMTH Length = 116 Score = 94.7 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 + +YE+FV+ H VGS+ A AL AR+++ RR SIW V+ S I Sbjct: 9 GRRFRVYEIFVQKDHQSPHVWVGSVDAGSAEDALLLARESFLRRDPAVSIWAVEQSAIHR 68 Query: 63 SQPEERGEFFDPAESKVYRHPTFYTIPDG 91 + +R +FF K YR Y + Sbjct: 69 TDYADR-DFFARETDKRYRTLAGYRESNA 96 >UniRef50_A4IPM9 Phenylacetic acid oxygenase complex B n=12 Tax=Bacillales RepID=A4IPM9_GEOTN Length = 119 Score = 93.9 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 6 WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 + ++EVF R +H SL A +E +AL A++ + RR +WVVK I Sbjct: 11 YQVFEVFSRRTPEAPLQHQFSLLAPNEELALVMAQENFMRREPVADLWVVKRDYIRRINE 70 Query: 66 EERGEFFDPAESKVYRHPTFY 86 EE+ ++K YR Y Sbjct: 71 EEKVA-LKRLDNKDYRLTRGY 90 >UniRef50_Q1IX22 Phenylacetate-CoA oxygenase, PaaB subunit n=5 Tax=Deinococci RepID=Q1IX22_DEIGD Length = 192 Score = 90.8 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 3 NVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVA 62 + W +EVF + G ++ VGS+HA D AL AR+ + RR S+W V+ ++++ Sbjct: 6 DTQWSRWEVFKQDAPGKPYQAVGSVHAGDPDHALLTARNVFVRRPSAVSLWTVREADLLT 65 Query: 63 SQPEE 67 + P+E Sbjct: 66 ATPQE 70 Score = 40.8 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 24 VGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVAS--QPEERGEFFDPAESKVYR 81 VG+L A AL AR+ Y + + + S +V + P +F PA+ K Y+ Sbjct: 105 VGTLEAKGPGDALRQAREQY---PDALTWLIFPESAVVRTDDDPGTLESWFAPAKDKTYK 161 Query: 82 HPTFYTI 88 +Y + Sbjct: 162 QQQYYGV 168 >UniRef50_D1C840 Phenylacetic acid degradation B n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C840_SPHTD Length = 96 Score = 88.5 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Query: 7 PLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPE 66 +YEVF + ++G HVG++ A + +A + AR+ Y+RR E +W+V + I Sbjct: 2 QIYEVFRQEREGEPMVHVGNVQAPGDDLARQYAREVYSRRGEATRLWLVPRAAIEEIG-- 59 Query: 67 ERGEFFDPAESKVYRHPTFYTI 88 F P + YR Y + Sbjct: 60 -DAYFLRPPIERSYRMGEAYRV 80 >UniRef50_A3KI27 Putative phenylacetic acid degradation protein n=3 Tax=Streptomyces RepID=A3KI27_STRAM Length = 103 Score = 85.1 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 38/79 (48%), Positives = 54/79 (68%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEER 68 +EVF+RG++GL+H+HVGS+ AA AL ARD YTRR E S+WVV++ + A+ P+ER Sbjct: 12 WEVFLRGRRGLAHQHVGSVRAAGPDAALAAARDLYTRRGEPLSLWVVRSDAVHAASPDER 71 Query: 69 GEFFDPAESKVYRHPTFYT 87 +F A K YR+P + Sbjct: 72 DPYFASARHKPYRYPEHFA 90 >UniRef50_Q72K11 Phenylacetic acid degradation protein paaB n=3 Tax=Thermus RepID=Q72K11_THET2 Length = 175 Score = 83.1 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 M WP +EV + + + VGS+HA D AL AR + RR +++V A Sbjct: 1 MWGTEWPRFEVIKQDTERSLPQMVGSVHATDPEHALLVARHVFVRRPSAYALFVAPAEAF 60 Query: 61 VASQPE 66 E Sbjct: 61 FHVTQE 66 >UniRef50_Q3ISM3 Conserved pterin operon protein n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3ISM3_NATPD Length = 102 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEE 67 +E+FVR RHVGS+ A D A E A + +E +WV ++++ E Sbjct: 22 WELFVRSDSEDPLRHVGSVRAPDADGAYELACRLFAWYAE--DVWVCPSADVTRYTTTE 78 >UniRef50_C7NVW7 Putative uncharacterized protein n=2 Tax=Halobacteriaceae RepID=C7NVW7_HALMD Length = 89 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPE 66 +E+FVR + H GS+ A +A E AR + +E +W+ A + Q E Sbjct: 21 WELFVREHESDPLTHAGSVSAPSADIAREQARQLFDWSAEA--LWLCPAEAVERCQTE 76 >UniRef50_C1VEV8 Putative uncharacterized protein n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VEV8_9EURY Length = 114 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEER 68 +EVFVR + RHVGS+ A +A E A + IWV A + Sbjct: 37 WEVFVREDDDDALRHVGSVSAPSADIAYEQATKLFGWY--ANDIWVCPADAVCRYSTHTL 94 Query: 69 GEFFDPAE 76 + + Sbjct: 95 DDDAERMT 102 >UniRef50_B9LR06 Putative uncharacterized protein n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LR06_HALLT Length = 124 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 6/99 (6%) Query: 1 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 M + +EVFVR ++ RHVG++ A A A + +WV A E Sbjct: 14 MRSADGRRFEVFVREREADPLRHVGTVTAPTPDAAHGEASKLFAWY--ARDVWVCPADET 71 Query: 61 VASQ----PEERGEFFDPAESKVYRHPTFYTIPDGIEHM 95 +E E+ P Y +G + Sbjct: 72 HRYSAGSLADEESGEAAGDENPDADEPRVYEETEGTPTV 110 >UniRef50_D2RS31 Putative uncharacterized protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RS31_9EURY Length = 126 Score = 55.8 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 +EVF+R + G RHVGS+ A E A E+A + +W+ A + Sbjct: 22 WEVFLREEPGDPLRHVGSVAAGSESEAHEHASRLFGWY--AVDVWLCPADAVGRYST 76 >UniRef50_B0R522 Putative uncharacterized protein n=2 Tax=Halobacterium salinarum RepID=B0R522_HALS3 Length = 83 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65 +EVFVR +HVGS+ A A E+A + SIWV A E Sbjct: 20 WEVFVRADADAPLKHVGSVTAGTADTAHEHASSLFDW--VARSIWVCPADETQRYTT 74 >UniRef50_C7NTT1 Putative uncharacterized protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NTT1_HALUD Length = 85 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 9 YEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEER 68 +EVFVR RHVGS+ A ++ A E A + + ++W+ S + E Sbjct: 23 WEVFVRETVEDPLRHVGSVTADEKATAREQAESLF---GDVVTVWLCPGSAVARYPDPEL 79 Query: 69 GE 70 Sbjct: 80 LP 81 >UniRef50_A0Z3K3 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3K3_9GAMM Length = 81 Score = 46.2 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 5 YWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI 60 W +EVF R + H+GS+ A + A+ AR Y+ + + E+ Sbjct: 14 DWDYFEVFAREELDGPLFHLGSVSAPNRAAAVGQARMVYS-EKPWVEMCICPRVEV 68 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.139 0.405 Lambda K H 0.267 0.0417 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 568,134,831 Number of Sequences: 3077464 Number of extensions: 18128824 Number of successful extensions: 49388 Number of sequences better than 1.0e-01: 27 Number of HSP's better than 0.1 without gapping: 61 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 49301 Number of HSP's gapped (non-prelim): 71 length of query: 95 length of database: 1,040,396,356 effective HSP length: 64 effective length of query: 31 effective length of database: 843,438,660 effective search space: 26146598460 effective search space used: 26146598460 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.1 bits)