BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (469 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 956 0.0 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 717 0.0 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 676 0.0 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 535 e-150 UniRef50_Q12CJ7 Nitrogen metabolism transcriptional regulator, N... 519 e-146 UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteoba... 481 e-134 UniRef50_D2UGQ5 Probable two-component regulatory system regulat... 473 e-132 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 465 e-129 UniRef50_C8PUF3 Nitrogen regulation protein NR n=1 Tax=Enhydroba... 464 e-129 UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, N... 456 e-126 UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, N... 451 e-125 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 410 e-113 UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=... 392 e-107 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 384 e-105 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 382 e-104 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 379 e-103 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 376 e-102 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 375 e-102 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 372 e-101 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 370 e-101 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 368 e-100 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 366 1e-99 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 362 1e-98 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 360 7e-98 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 359 1e-97 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 358 2e-97 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 357 4e-97 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 357 4e-97 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 357 7e-97 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 356 1e-96 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 355 2e-96 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 354 4e-96 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 353 6e-96 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 353 6e-96 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 352 2e-95 UniRef50_B2VA05 Two component, sigma54 specific, transcriptional... 351 3e-95 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 351 4e-95 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 350 5e-95 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 349 1e-94 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 349 1e-94 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 348 2e-94 UniRef50_Q2G705 Two component, sigma54 specific, transcriptional... 348 3e-94 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 348 3e-94 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 347 7e-94 UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax... 347 7e-94 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 347 8e-94 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 347 8e-94 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 345 2e-93 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 345 2e-93 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 345 2e-93 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 342 2e-92 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 342 2e-92 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 341 4e-92 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 340 5e-92 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 340 7e-92 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 339 1e-91 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 339 1e-91 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 339 1e-91 UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planct... 339 2e-91 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 339 2e-91 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 338 2e-91 UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodop... 338 2e-91 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 337 5e-91 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 337 8e-91 UniRef50_Q6ARB9 Probable two-component system response regulator... 336 9e-91 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 336 9e-91 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 336 1e-90 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 336 1e-90 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 335 2e-90 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 335 2e-90 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 334 5e-90 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 333 8e-90 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 333 9e-90 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 333 1e-89 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 333 1e-89 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 332 1e-89 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 332 1e-89 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 332 1e-89 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 332 2e-89 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 332 2e-89 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 332 3e-89 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 331 3e-89 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 331 4e-89 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 331 4e-89 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 331 4e-89 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 331 4e-89 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 330 5e-89 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 330 6e-89 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 330 7e-89 UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax... 330 8e-89 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 329 1e-88 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 329 1e-88 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 329 1e-88 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 329 2e-88 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 328 2e-88 UniRef50_A7HIN1 Two component, sigma54 specific, transcriptional... 328 2e-88 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 328 2e-88 UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulato... 328 3e-88 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 327 4e-88 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 327 7e-88 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 327 9e-88 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 327 9e-88 UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional... 326 1e-87 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 326 1e-87 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 326 1e-87 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 326 1e-87 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 325 2e-87 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 325 2e-87 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 325 2e-87 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 325 3e-87 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 325 3e-87 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 324 3e-87 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 324 4e-87 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 324 4e-87 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 324 4e-87 UniRef50_UPI00016C50F5 nitrogen regulation protein NR(I) n=1 Tax... 324 4e-87 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 324 5e-87 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 323 7e-87 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 323 7e-87 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 323 7e-87 UniRef50_C7LX78 Two component, sigma54 specific, transcriptional... 323 7e-87 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 323 7e-87 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 323 9e-87 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 323 9e-87 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 323 9e-87 UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional... 323 9e-87 UniRef50_C1A631 Putative NtrC family two-component response regu... 323 9e-87 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 323 1e-86 UniRef50_B3QKR1 Two component, sigma54 specific, transcriptional... 323 1e-86 UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional... 322 1e-86 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 322 1e-86 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 322 2e-86 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 321 3e-86 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 321 3e-86 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 321 3e-86 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 321 4e-86 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 321 4e-86 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 321 4e-86 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 321 4e-86 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 321 4e-86 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 321 4e-86 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 320 5e-86 UniRef50_D2MI41 Transcriptional regulatory protein ZraR n=1 Tax=... 320 5e-86 UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verru... 320 7e-86 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 320 1e-85 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 319 1e-85 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 319 1e-85 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 318 3e-85 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 318 3e-85 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 318 4e-85 UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator... 318 4e-85 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 317 4e-85 UniRef50_D2L101 Two component, sigma54 specific, transcriptional... 317 5e-85 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 317 6e-85 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 317 6e-85 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 317 7e-85 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 317 7e-85 UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-... 317 7e-85 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 317 9e-85 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 317 9e-85 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 316 1e-84 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 316 1e-84 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 316 1e-84 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 316 1e-84 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 316 1e-84 UniRef50_Q1DD46 Sigma-54 dependent DNA-binding reponse regulator... 316 1e-84 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 315 2e-84 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 315 2e-84 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 315 2e-84 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 315 3e-84 UniRef50_Q314G6 Two component transcriptional regulator, Fis fam... 315 3e-84 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 314 4e-84 UniRef50_Q3SKC8 Two Component Transcriptional Regulator, Fis fam... 314 4e-84 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 314 4e-84 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 314 4e-84 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 314 4e-84 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 314 4e-84 UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC ... 314 4e-84 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 314 4e-84 UniRef50_A3WNQ8 Response regulator containing CheY-like receiver... 314 5e-84 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 314 5e-84 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 314 5e-84 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 313 6e-84 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 313 6e-84 UniRef50_C5CF13 Two component, sigma54 specific, transcriptional... 313 7e-84 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 313 9e-84 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 313 1e-83 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 313 1e-83 UniRef50_A5D4G1 Response regulator n=8 Tax=Bacteria RepID=A5D4G1... 312 1e-83 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 312 2e-83 UniRef50_B9M936 Two component, sigma54 specific, transcriptional... 312 2e-83 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 312 2e-83 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 312 2e-83 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 311 3e-83 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 311 3e-83 UniRef50_Q3B305 Two component transcriptional regulator, Fis fam... 311 3e-83 UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional... 311 3e-83 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 311 3e-83 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 311 3e-83 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 311 4e-83 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 311 4e-83 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 311 4e-83 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 311 4e-83 UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-... 310 5e-83 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 310 6e-83 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 310 6e-83 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 310 7e-83 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 310 8e-83 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 310 8e-83 UniRef50_C1SI10 Response regulator with CheY-like receiver, AAA-... 310 8e-83 UniRef50_C1ZBV1 Response regulator with CheY-like receiver, AAA-... 310 9e-83 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 310 1e-82 UniRef50_B8DJ26 Two component, sigma54 specific, transcriptional... 310 1e-82 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 309 1e-82 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 309 2e-82 UniRef50_B3DV39 DNA-binding response regulator, NtrC family (Con... 309 2e-82 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 308 3e-82 UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis ... 308 3e-82 UniRef50_Q3JI73 C4-dicarboxylate transport transcriptional respo... 308 4e-82 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 308 4e-82 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 308 4e-82 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 307 5e-82 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 307 6e-82 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 307 6e-82 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 307 6e-82 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 307 7e-82 UniRef50_A1SUB0 Two component, sigma54 specific, transcriptional... 307 7e-82 UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Ca... 306 7e-82 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 306 7e-82 UniRef50_C5AKI5 Two component, sigma54 specific, transcriptional... 306 8e-82 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 306 8e-82 UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=G... 306 9e-82 UniRef50_A8FXH4 Two component, sigma54 specific, transcriptional... 306 1e-81 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 306 1e-81 UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional... 306 1e-81 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 305 2e-81 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 305 2e-81 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 305 2e-81 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 305 3e-81 UniRef50_D0KVQ8 Two component, sigma54 specific, transcriptional... 305 3e-81 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 305 3e-81 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 304 4e-81 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 304 4e-81 UniRef50_Q2SNF9 Sigma 54-dependent transcriptional activator con... 304 4e-81 UniRef50_D0IAX5 Two component sigma54 specific transcriptional r... 304 5e-81 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 304 5e-81 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 304 5e-81 UniRef50_C7PLE1 Two component, sigma54 specific, transcriptional... 304 6e-81 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 303 6e-81 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 303 7e-81 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/469 (100%), Positives = 469/469 (100%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM Sbjct: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS Sbjct: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA Sbjct: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE Sbjct: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR Sbjct: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL Sbjct: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN Sbjct: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME Sbjct: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/471 (73%), Positives = 402/471 (85%), Gaps = 2/471 (0%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+G VWVVDDDSSIRWVLERA+ G+ C FE+ +VL+AL S+ PDVLLSDIRMP M Sbjct: 1 MQKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL+LLK IK+++P LPVIIMTAHSDLDAAV+AYQQGAFDYLPKPFDIDE +AL+ERAI+ Sbjct: 61 DGLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAIT 120 Query: 121 HYQEQQQPRNVQ-LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 HY+EQ+QP N + + +D+IGEAPAMQ+V+RIIGRLSRSSISVLINGESGTGKELVAH Sbjct: 121 HYREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAH 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALHRHSPRA APFIALNMAAIPKDLIESELFGHEKGAFTGA+ +RQGRFEQA+GG+LFLD Sbjct: 181 ALHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPLD+QTRLLRVLA+GQFYRVGGYAPVKVDVRIIAATHQ+LE+RV EG FREDL+H Sbjct: 241 EIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYH 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVIR+ LPPLR+R EDIP LAR+FLQ A+ELGVE K LH ++ + W GNVRQ Sbjct: 301 RLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQ 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGEL-FESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 LEN CRWLTVM A QE++ QDLP E+ A++ +++ W+ L+ WAD AL G Sbjct: 361 LENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGK 420 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +N+L++A P+ ERTLL +AL +TQGHKQ+AARLLGWGRNTLTRKLKELG+E Sbjct: 421 ENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGIE 471 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/476 (69%), Positives = 381/476 (80%), Gaps = 10/476 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+G VW+VDDDS+IRWVLERAL A + CT+FE+ VL AL PDVL+SDI MP Sbjct: 1 MQKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDN 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL ++KQ HP LP+IIMTAHSDL+ AV+AYQQGAFDYLPKPFDIDE + LV+RA++ Sbjct: 61 DGLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALN 120 Query: 121 HYQEQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +Y+ QQ N + N P T IIGEAPAMQ+V+RIIGRLSRSSISVLINGESGTGKEL Sbjct: 121 YYRNQQP--NTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKEL 178 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A ALHRHSP+A PFIALNMAAIPKDLIESELFGHEKGAFTGA+ +RQGRFEQA GG+L Sbjct: 179 IADALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSL 238 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDMPLD+QTRLLRVLA+GQFYRVGGY P+KVDVRIIAATHQ LEQ VQEGKFRED Sbjct: 239 FLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFRED 298 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LFHRLNVIR+ LPPLRER EDIP LAR+FL A++LGVE+K+L P+TE L L W GN Sbjct: 299 LFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGN 358 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFES----TVAESTSQMQPDSWATLLAQWADR 412 VRQLEN C WLTVM++ Q +L QDLP +L ++ + T + W LA W Sbjct: 359 VRQLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKT 418 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 AL + QNLL + P++ERT+L AL +T+GHKQEAARLLGWGRNTLTRKLKE GM Sbjct: 419 ALENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEFGM 474 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 277/464 (59%), Positives = 333/464 (71%), Gaps = 9/464 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 +W++DDD SIRWVL +A +G FE E+ AL SK PD ++SDIRMPG DGLAL Sbjct: 7 LWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMPGTDGLAL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LKQIKQR P LP++IMTAHSDLD AVSA++ GAF+YL KPFDI+EA +V +A++H + Sbjct: 67 LKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKAMAHRSKP 126 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + V DIIGE+ MQDVFR IGRLS SS+SVLI GE+GTGKE VA ALH+HS Sbjct: 127 EV--RVSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVARALHKHS 184 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 PR+ PFIALNMAAIP DL+ESELFGHE+GAFTGA+ R GRF QADGGTLFLDEIGDMP Sbjct: 185 PRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLDEIGDMP 244 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L VQTRLLRVLA+GQFY VG + PV+V+VR+IAATH++L++ V +FREDL+HRLNVI+ Sbjct: 245 LSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYHRLNVIQ 304 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + LP LRER++DIP LAR+FL+ +A EL V K L A L WPGNVRQLEN CR Sbjct: 305 LRLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQLENVCR 364 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL--LS 423 WLTVMA Q+V +LP EL E + Q +W LLA LR+ N ++ Sbjct: 365 WLTVMAPAQQVSPDELPHELLEQSEQLENGQ-STGNWRELLAH----ELRTQTHNYDNMT 419 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 ++ER L AL GHKQ+AA LGWGRNTLTRKLK L Sbjct: 420 PIIQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLKLLS 463 >UniRef50_Q12CJ7 Nitrogen metabolism transcriptional regulator, NtrC, Fis family n=33 Tax=Proteobacteria RepID=Q12CJ7_POLSJ Length = 494 Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust. Identities = 277/496 (55%), Positives = 348/496 (70%), Gaps = 37/496 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT----PDVLLSDIRMPGMD 61 +W+VDDD SIR+VLE+AL L +F N EVL AL + T P VL+SDIRMPG Sbjct: 4 IWIVDDDQSIRFVLEKALLREDLPTRSFTNPREVLLALENATEEEGPQVLVSDIRMPGGS 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL+++KQ+ P LPVIIMTA SDLD+AVSA+Q GAF+YLPKPFD+ +AV L+ RA+ Sbjct: 64 GLDLLEKVKQKLPGLPVIIMTAFSDLDSAVSAFQGGAFEYLPKPFDLPKAVELIRRAVEE 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q ++ P +++G+APAMQDVFR IGRLS+S ++V+I GESG+GKELVA AL Sbjct: 124 SQREEVAEERMAAAP--EMLGQAPAMQDVFRAIGRLSQSMVTVMITGESGSGKELVARAL 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+HSPRA PF+A+N AAIPKDL+ESELFGHE+GAFTGA T+R+GRFEQA+GGTLFLDEI Sbjct: 182 HKHSPRANGPFVAINTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMP D+QTRLLRVL+DG FYRVGG+ VK +VR+IAATHQ+LEQRV+EG FREDLFHRL Sbjct: 242 GDMPFDLQTRLLRVLSDGHFYRVGGHNAVKANVRVIAATHQDLEQRVKEGGFREDLFHRL 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVIR+ LP LRERRED+ L RHFLQ +A++LGVE K + L+ ++PGNVRQLE Sbjct: 302 NVIRLRLPALRERREDVFMLTRHFLQQSAKQLGVEPKRISDAALQQLSNFSFPGNVRQLE 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELF------------ESTVAESTSQMQPDSWATLLAQW 409 N C WLTVMA Q + +DLP E+ ++ +A T M A L Sbjct: 362 NICHWLTVMAPAQVIEAKDLPPEVLGVPHEPAPGASDKAPLAPVTPTMHMPEPAVLAGPA 421 Query: 410 ADR----------------ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLG 453 A A RS ++L+ E L+ TAL +T+G + EAA+ LG Sbjct: 422 AGEQNWEAGLEAEALALLAAGRSDVWDVLTR---RFESRLIQTALLNTRGRRIEAAQKLG 478 Query: 454 WGRNTLTRKLKELGME 469 GRNT+TRK++EL +E Sbjct: 479 IGRNTITRKIQELNLE 494 >UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteobacteria RepID=B6BW54_9PROT Length = 465 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/463 (49%), Positives = 312/463 (67%), Gaps = 9/463 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 +W++DDD SIRWVL++AL T F N E + PD+++SDI+MPG GL Sbjct: 8 IWILDDDKSIRWVLQKALEKNNYTVLAFGNTNEAINQFNHDMPDLIVSDIKMPGESGLQF 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+++K + P +PVIIMTA SDLD+AV +Y GA++YLPKPFDID A+ ++ A E Sbjct: 68 LEKVKGKFPNIPVIIMTAFSDLDSAVDSYSHGAYEYLPKPFDIDNAINVINSAFK--DEA 125 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + ++ T IIG + AMQ+VF+ IG+LS+S S+LI GESGTGKELVA A+H +S Sbjct: 126 DELNDID---STNKIIGTSKAMQEVFKQIGKLSKSDASILITGESGTGKELVAKAIHDNS 182 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PF+ALN AAIPKDL+ESELFG+EKGAFTGAN+ ++G FE+A GTLFLDEI DMP Sbjct: 183 LRKDKPFVALNSAAIPKDLLESELFGYEKGAFTGANSSKKGYFEEAQDGTLFLDEIADMP 242 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 +D+Q++LLRVL DG F ++G + +K +V+IIAATHQ+L+ ++ FREDLFHRLNVI Sbjct: 243 IDLQSKLLRVLNDGSFQKLGSSSVIKANVKIIAATHQDLQDKINNQTFREDLFHRLNVIT 302 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + LPPLRER DI LA+ FL +A++L K L+ ET+ +L W GN+RQL N C Sbjct: 303 IQLPPLRERENDITLLAKFFLNQSAQDLNTSIKYLNEETQDYFKKLNWTGNIRQLRNICH 362 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 WLTVM+ G+E+ + DLP EL + + S +W L + + N+ Sbjct: 363 WLTVMSPGKEIGVSDLPTELLKENIYNKPSF----NWEDNLELVIQNDILNNETNIYDTY 418 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +LE L+ +AL+H G + +AA +LG GRNT+TRK+K++ + Sbjct: 419 IEKLESILIKSALKHCSGKRIKAAHILGIGRNTITRKIKDINI 461 >UniRef50_D2UGQ5 Probable two-component regulatory system regulatory ntrc transcription regulator protein n=1 Tax=Xanthomonas albilineans RepID=D2UGQ5_XANAL Length = 474 Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust. Identities = 241/459 (52%), Positives = 318/459 (69%), Gaps = 3/459 (0%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPGMDGLA 64 +WVVDDD S+R+VL AL AG + +F+N L+AL ++P D+L +D+RMPG DGL Sbjct: 11 IWVVDDDRSVRFVLSTALRDAGYSVDSFDNAIAALQALVERSPPDLLFTDVRMPGDDGLV 70 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL ++K HP LPVI+M+A++D+ + A++ GA ++L KPFD+D+AVAL RA+ Sbjct: 71 LLDKLKAAHPQLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAARALPESSP 130 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 + ++IG+ PAM+ +FR IGRL+++ +SVLINGE+GTGKELVAHALH Sbjct: 131 GVVATPPVSAHGSAELIGDTPAMRALFRAIGRLAQAPLSVLINGETGTGKELVAHALHNE 190 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 SPRA+ PF+ALN AAIP +L+E+ELFGHE GAFTGA GRFEQADGGTLFLDEIGDM Sbjct: 191 SPRARKPFVALNTAAIPAELLENELFGHEAGAFTGAQRRHIGRFEQADGGTLFLDEIGDM 250 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +QTRLLRVLA+ +F+RVGG ++VDVR+IAATHQ+LE V++G+FR DL HRL+V+ Sbjct: 251 PLPLQTRLLRVLAENEFFRVGGRELIRVDVRVIAATHQDLEALVEQGRFRADLLHRLDVV 310 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 R+ LPPLRERR D+P+LA +FL +AAR+L K L P A L AWPGNVR+LEN C Sbjct: 311 RLQLPPLRERRTDVPQLAENFLAMAARKLDTPPKRLSPAALAVLRGYAWPGNVRELENVC 370 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 L +A + + D+ L E + W T L+ WA + L G + L +E Sbjct: 371 WRLAALAPAEVIDAHDVDSALLRGGRRERSGDG--GEWETQLSAWAQQRLSDGAEGLHAE 428 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 A+ ++ LL ALR T G + EAA LG GRNT+TRKL Sbjct: 429 ARERFDKALLEVALRFTHGRRAEAAARLGVGRNTVTRKL 467 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 231/475 (48%), Positives = 330/475 (69%), Gaps = 15/475 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ VW++DD+ SIR + AL +F + +E L AL S TPD++++DI+MPGM Sbjct: 1 MKMNNVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL L ++ ++ P LP II+TAH+++D A+SAY+ GAF+YL KPFDI+E L +A Sbjct: 60 SGLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATK 119 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + Q + N + I+G+A +MQ+VF+ IG++S++ I+VLI GESGTGKEL+A + Sbjct: 120 SSKPQHDELTQESN---SQIVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQS 176 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +S R+ PFIA+N+AAIP +L+ESELFGHEKG+FTGA + R GRFEQA GGTLFLDE Sbjct: 177 VHENSSRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLDE 236 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM ++QTRLLRVL+ +FYRVGG P+K DVRIIAAT+QN+E ++ GKFREDL+HR Sbjct: 237 IGDMHPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHR 296 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV R+ LPPLR+R+EDIP L ++FL+ +A E+ + K + L WPGN+RQL Sbjct: 297 LNVFRIELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQL 356 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLA--QWAD---RALR 415 ENTCR++TVMA + + D+P E+ + S P+ + L + W + +R Sbjct: 357 ENTCRYITVMAPSTSITLDDIPDEVKNVDM----SLGDPNHFNGLGSNGNWEESLSNHIR 412 Query: 416 SGHQNL--LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 S Q++ L+ +LE+ LL AL+ ++G + +AA++LG GRNT+TRK+K+LG+ Sbjct: 413 SVLQDMNDLTNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKIKDLGL 467 >UniRef50_C8PUF3 Nitrogen regulation protein NR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUF3_9GAMM Length = 592 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 237/423 (56%), Positives = 284/423 (67%), Gaps = 39/423 (9%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL-------------ASKTPDVL 51 IVWV+DDD ++R +LE L +G TF N L ++ P V+ Sbjct: 14 IVWVIDDDQALRMILEDTLTDSGFQVQTFGNAQSAWRLLQDSEQDSQPKSDNSASLPSVI 73 Query: 52 LSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEA 111 ++DIRMP M+GL +IKQ +PVIIMTAH+D+ +AV +YQ GAFDYLPKPF++D+A Sbjct: 74 VTDIRMPMMNGLDFSSKIKQAFAQIPVIIMTAHADVQSAVDSYQSGAFDYLPKPFELDDA 133 Query: 112 VALVERAISHYQEQQ-QPRNVQLN-----------------------GPT--TDIIGEAP 145 +A+V++A Q Q Q R+ N PT + IIG++ Sbjct: 134 IAMVKKACLQSQSNQTQKRSKSENYNDSLIRDAQQPPAQKVAVALEKAPTNPSGIIGQSI 193 Query: 146 AMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 AMQ VFR IGRLS ++VLI GESGTGKEL+A ALH HSPR PFIALNMAAIP DLI Sbjct: 194 AMQKVFRAIGRLSHMPMTVLITGESGTGKELIASALHEHSPRKSKPFIALNMAAIPHDLI 253 Query: 206 ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVG 265 E+ELFGHEKGAFTGA T RQGRFEQA GGTLFLDEIGDMPL QTRLLRVLA+G+FYRVG Sbjct: 254 EAELFGHEKGAFTGATTTRQGRFEQAHGGTLFLDEIGDMPLPTQTRLLRVLANGEFYRVG 313 Query: 266 GYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHF 325 G P+KVDVRIIAATHQNLE VQ+GKFREDLF+RLNVIR+ LP LRERREDIP L F Sbjct: 314 GLKPIKVDVRIIAATHQNLETLVQQGKFREDLFYRLNVIRLALPSLRERREDIPLLIDFF 373 Query: 326 LQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGEL 385 +Q A+ + K + P L W GNVRQLENTCRWL+VM GQ + DLP E+ Sbjct: 374 MQNIAKSMHTHTKTITPSAMHILQSYPWQGNVRQLENTCRWLSVMTTGQTIQPSDLPPEI 433 Query: 386 FES 388 ++ Sbjct: 434 LQA 436 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 3/99 (3%) Query: 371 AAGQEVLIQDLPGELFESTVAESTSQMQPDS---WATLLAQWADRALRSGHQNLLSEAQP 427 +A V +LP L +TV + Q + W T L WA +AL G ++L A P Sbjct: 485 SANLNVHSSELPTPLSATTVIPTLHASQTGATADWITPLQIWAQQALAEGQYDILQTAYP 544 Query: 428 ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 E+ LL AL HT HK +AA LLGWGRNT+TRK ++L Sbjct: 545 MFEKCLLEVALAHTAQHKGQAADLLGWGRNTVTRKYQQL 583 >UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Psychrobacter RepID=A5WGF4_PSYWF Length = 602 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 236/437 (54%), Positives = 287/437 (65%), Gaps = 55/437 (12%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT---------PDVLLSDIR 56 +W++DDD ++R +LE + + AGL F N L S PDV+L+DIR Sbjct: 12 LWLIDDDPALRLILEDSFSDAGLQVQAFSNAKGAWARLNSVLNGSEPEDILPDVILTDIR 71 Query: 57 MPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE 116 MP MDGL+ + + P LPVIIMTAHSDL +AV +Y GAF+YLPKPFD+D A+ +V+ Sbjct: 72 MPMMDGLSFSQWMHTNFPSLPVIIMTAHSDLKSAVDSYDTGAFEYLPKPFDLDHAICVVK 131 Query: 117 RAI------------------------SHYQEQQQPRNVQLNGP---------------- 136 +AI S +E Q N + Sbjct: 132 KAITTNPAAALVDNAIVAEDSEVPSAASDKKEAMQRPNTTPSSEIKKQPATKKGSPVATK 191 Query: 137 ------TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKA 190 +T IIG++PAMQ VFR IGRL+ S I+VLI GESGTGKELVA ALH++SPR K Sbjct: 192 ASAASESTPIIGQSPAMQTVFRAIGRLASSPITVLITGESGTGKELVAGALHQNSPRQKK 251 Query: 191 PFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQT 250 PFIALNMAAIP +LIESELFGHEKGAFTGA T+R GRFEQA+GGTLFLDEIGDMP QT Sbjct: 252 PFIALNMAAIPHELIESELFGHEKGAFTGATTLRHGRFEQANGGTLFLDEIGDMPFSTQT 311 Query: 251 RLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPP 310 RLLRVLA+G+F+RVGG P+ VDVRIIAATHQNLEQ V+EGKFREDLF+RLNVIR+ LPP Sbjct: 312 RLLRVLANGEFFRVGGQKPITVDVRIIAATHQNLEQLVKEGKFREDLFYRLNVIRLPLPP 371 Query: 311 LRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 LR R +DIP L F+ AA E+ + K L E + WPGNVRQLEN CRW+TVM Sbjct: 372 LRARPDDIPDLVEFFMSKAATEMKTDKKQLTTEALHIMQAFDWPGNVRQLENACRWITVM 431 Query: 371 AAGQEVLIQDLPGELFE 387 A G+ + ++DLP +L E Sbjct: 432 ATGERLGVEDLPPDLTE 448 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/69 (52%), Positives = 46/69 (66%) Query: 401 SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLT 460 SW L WA AL+ G +L +A P E+ L+ AL +++G K EAA LLGWGRNTLT Sbjct: 531 SWQDQLQNWAHTALQQGQTEILQQATPTFEKILIRVALEYSKGRKGEAADLLGWGRNTLT 590 Query: 461 RKLKELGME 469 RK+K LG+E Sbjct: 591 RKIKLLGLE 599 >UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=20 Tax=Gammaproteobacteria RepID=B4SRV8_STRM5 Length = 482 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 237/463 (51%), Positives = 312/463 (67%), Gaps = 5/463 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLL-SDIRMPGMDGLA 64 +WVVDDD ++R+VL AL AG F++ A L+AL+ P LL +D+RMPG DGL Sbjct: 11 IWVVDDDRAVRFVLCTALREAGYQVVDFDSAAPALQALSEGPPPALLFTDVRMPGDDGLV 70 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL ++K P LPV++M+A++D+ + A++ GA ++L KPFD+D+AVAL +R + Sbjct: 71 LLDKLKAVLPQLPVVVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAQRVLPAVAP 130 Query: 125 QQQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + ++G+ P M+ +FR IGRL+++ ++VLI GE+GTGKELVAHAL Sbjct: 131 AMAAAAPTTATSSDQPPQLVGDTPPMRALFRAIGRLAQAPLAVLITGETGTGKELVAHAL 190 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR SPRA+APF+ALN AAIP +L+ESELFGHE GAFTGA GRFEQA+GGTLFLDEI Sbjct: 191 HRESPRAQAPFVALNTAAIPAELLESELFGHEAGAFTGAQRRHIGRFEQANGGTLFLDEI 250 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMPL +QTRLLRVLA G+F+RVGG ++VDVR++AATHQ+LE V +GKFR DL HRL Sbjct: 251 GDMPLPLQTRLLRVLAQGEFFRVGGRELIRVDVRVVAATHQDLEGLVAQGKFRADLLHRL 310 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +V+R+ LPPLRERREDI +LA FL AAR+L K L AL WPGNVR+LE Sbjct: 311 DVVRLQLPPLRERREDIAQLANTFLAAAARKLDTPPKRLTAAALQALREHDWPGNVRELE 370 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFEST-VAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N C + +AA + + D+ L + ST+ P W LLA+WA R L G + Sbjct: 371 NVCWRMAALAAADTIGVADVDTALNRTRGRRSSTTSADPGQWEALLAEWARRQLAEGVEG 430 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 L ++ + ++ LL AL+ T G + EAA LG GRNTLTRKL Sbjct: 431 LHAQVRERVDHALLEAALQITHGRRAEAAARLGLGRNTLTRKL 473 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust. Identities = 227/500 (45%), Positives = 315/500 (63%), Gaps = 41/500 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V DDD ++R+VLE+AL+ AG F N ++ D++++D+ MPG GL + Sbjct: 9 ILVADDDQAVRFVLEQALSRAGYKVHAFGNTQPLVNHFNQYGGDLIITDVVMPGGSGLDM 68 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++ +K +P LP+I+MTA S L AV A+++GAF+YL KPFDI+ V L RA+ +E+ Sbjct: 69 VQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRRALQKQEER 128 Query: 126 --QQPR------------NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 QP+ + QL IIG + AMQ +F IGRLS S ++VLI+GESG Sbjct: 129 VRNQPQTKTKQQAAAEDMDRQLEERFGGIIGSSRAMQALFHTIGRLSNSEMTVLIHGESG 188 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKELVA A+H +SPR + PF A+NMAAIP+DLIESELFGHEKGAFTGA + R G F++A Sbjct: 189 TGKELVARAVHAYSPRRRGPFTAINMAAIPRDLIESELFGHEKGAFTGAVSRRPGHFQKA 248 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 +GGTLFLDEIGDMP++ QTRLLRVL +G F VG ++ DVRIIAATHQ+L + EG Sbjct: 249 EGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATHQDLPTAISEG 308 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 +FREDLF+RLNVI +H+P LR R+EDIP L+++FL ++EL V K L L Sbjct: 309 RFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTSKELKVATKRLTQSAMEKLVAY 368 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE---------------STSQ 396 WPGNVR+LEN R LTV+ E+ + + EL+E T+ + ST Sbjct: 369 DWPGNVRELENLIRRLTVLIPEDEIRPEKI--ELYERTMPKLARNDLSGHEPQEERSTES 426 Query: 397 MQPDSWATLLAQWADRAL-------RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAA 449 S+ +L Q D SG +++ ++E L+ LR T+G++ +AA Sbjct: 427 NTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLR---KMEAVLIPRVLRQTRGNRVKAA 483 Query: 450 RLLGWGRNTLTRKLKELGME 469 ++LG RNTL +K+++LGM+ Sbjct: 484 QILGINRNTLRKKMRDLGMD 503 >UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=122 Tax=Alphaproteobacteria RepID=NTRC_AZOC5 Length = 480 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/482 (45%), Positives = 312/482 (64%), Gaps = 21/482 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M G + V DDD++IR VL +AL+ AG + N A + ++ D++++D+ MP Sbjct: 1 MPTGSILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDE 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 + LL +IK+ P LPVI+M+A + A+ A ++GA++YLPKPFD+ E +++V RA++ Sbjct: 61 NAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALA 120 Query: 121 HYQEQQQ---PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ ++ + Q N P ++G + AMQ+++R++ RL ++ ++V+I GESGTGKELV Sbjct: 121 EPKKAEKLALGSDEQENIP---LVGRSAAMQEIYRLLARLMQTDLTVMIAGESGTGKELV 177 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH + R PF+A+NMAAIP+DLIESELFGHEKG+FTGA T GRFEQA+GGTLF Sbjct: 178 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNAGRFEQAEGGTLF 237 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDMP++ QTRLLRVL G++ VGG P+K DVRIIAAT+++L +Q+G FREDL Sbjct: 238 LDEIGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFREDL 297 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F RLNV+ + LPPLRER ED+P L RHF A RE G+ AK + L R WPGNV Sbjct: 298 FFRLNVVPLRLPPLRERSEDVPDLVRHFFLQAERE-GLPAKQVDSAALDRLKRYRWPGNV 356 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN R L + + + + EL E + + D ATL A +R L +G Sbjct: 357 RELENLVRRLAALYPQEIITPSIIEAELSEPAPSALSEDGPVD--ATLGAS-VERHL-NG 412 Query: 418 HQNLLSEAQP----------ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + + E P ++E LL+ AL T+G++ +AA LLG RNTL +K+++L Sbjct: 413 YFSGFGEDLPPPGLYHRILRDVEYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIRDLD 472 Query: 468 ME 469 ++ Sbjct: 473 IQ 474 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/479 (43%), Positives = 308/479 (64%), Gaps = 23/479 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V DD+ S+RWVL +AL G T ++G + L + + D+ + DI+MPGM GL L Sbjct: 6 ILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLDL 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE-----RAIS 120 L +I++ L V+IMTA + + AV A ++GA+DY+ KPFD+D A+VE R I+ Sbjct: 66 LDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREIA 125 Query: 121 H-----YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 QE ++ V+ N IIG + AMQ +++ IG+++ S I++LI GESGTGKE Sbjct: 126 GQVSLLKQELKEHYQVEKN-----IIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 +VA A+H +S R PF+A+N AAIP+DL+ESELFG E+GAFTGA+ +QG+FEQA+ GT Sbjct: 181 MVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDMPLD+Q ++LRVL + + RVGG + V+VRI+AAT+Q L++RV++ +FRE Sbjct: 241 IFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ + L PLRERR+DIP L R+FL EL + K L PE A L+R +WPG Sbjct: 301 DLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LENT + +++ + D G E E T+ D+ + + R+ Sbjct: 361 NVRELENTIKRAVILSNDPMLTEADFDGLQPE---GEETAMTPQDASLEAIVEAKLRSCL 417 Query: 416 SG-----HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +G ++ ++ ++ER L+ L T+ ++ +AA +LG RNTL +K+ +L +E Sbjct: 418 TGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/464 (43%), Positives = 294/464 (63%), Gaps = 15/464 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 +V VVDD+ S+ L+ L +G + T +G E LE + P +L DIRMP MDG+ Sbjct: 4 LVLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIK 63 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L+ ++++HP +PVI+MTA+SD ++A + GAF+Y+ KP ++DE ++ +E+A + + Sbjct: 64 VLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEP 123 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 ++ +IG +PAMQ+V++ IGR++ S ++VLI GESGTGKELVA A+H + Sbjct: 124 LVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYN 183 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 SPR PF+ ++ AIP++L+ESELFGHEKGAFTGA+T + G+FE ADGGT+FLDEIGD+ Sbjct: 184 SPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDI 243 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 +Q +LLR L + F RVGG +VDVRIIAAT+++LE+RV+ G FREDL++RLNV+ Sbjct: 244 SPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVV 303 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + LPPLRER+EDI L +F+ ++ R+ G + L L + WPGNVR+L N C Sbjct: 304 EIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVC 363 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 +MA G + + LP L + + ++W DR + L E Sbjct: 364 ERAVLMARGNVITPESLPEYLLRAVRGRT------EAW----HPAEDRGVLP-----LKE 408 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER+ + AL +G+K AR LG R TL K+KELG+ Sbjct: 409 MVAEMERSAILRALEEYRGNKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/468 (42%), Positives = 293/468 (62%), Gaps = 21/468 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ ++R +L A A G NG L A PDV+L DIRMP MDG+ Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+++ PVI+MTA+++++ AV A + GAFDY+ KPFD+DE +V+RA+ + Sbjct: 67 LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMK 126 Query: 126 QQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ R++ T+ I+ +PAM D+ + +++ S SVLI+GESGTGKEL+A A+ Sbjct: 127 KEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAI 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S RAK PFI +N AA+P+ L+ESELFGHEKGAFTGA T+RQG FE+A+ GTL LDEI Sbjct: 187 HYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+MPL +Q +LLR+L + +F R+GG+ +KVD+RIIAAT+++L+ V+EG FREDLF+RL Sbjct: 247 GEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLR+RREDI LA HFLQ + E + + P + LT +WPGN+R+L Sbjct: 307 NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELS 366 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N VM +G + +DLP ++ + + P G +NL Sbjct: 367 NVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAP----------------VGERNL 410 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E + +E+ ++ L +G++ A +LG R L KL+E G++ Sbjct: 411 KEEIK-RVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/506 (39%), Positives = 301/506 (59%), Gaps = 42/506 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASK-TPDVLLSDIRMPGMDGLA 64 + +VDDD IR+ L R L G T +G E +E + PD+++ D+RM G+ G+ Sbjct: 10 ILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGISGIE 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+ ++ L +++MTA A+ A + GA+DY+ KPFD+D+ + + E+AIS Q+ Sbjct: 70 TLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSSQD 129 Query: 125 ----QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + V + I+G +PAMQ+VF++IG+++ S +VL+ GESGTGKEL+A Sbjct: 130 LKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKELIAKC 189 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +++HS R+ PF+A+N AAIP +LIESELFGHEKG+FTGA T R GRFEQ D GT+FLDE Sbjct: 190 IYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFLDE 249 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM L QT++LRVL +G+ RVGG +KVDVR+IAAT+++LE+ V++ +FREDL++R Sbjct: 250 IGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLYYR 309 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV R+ +P L+ER+ED+P + LQ +E + P+ AL WPGNVR+L Sbjct: 310 LNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGNVREL 369 Query: 361 ENTCRWLTVMAAGQEVLIQDLP-------GELF--------------------ESTVAES 393 N V+A G +L++DLP GE +++ AE+ Sbjct: 370 GNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEPQASAAET 429 Query: 394 TSQMQP--DSWATLLAQWADRALRSGHQNLLSEAQPE--------LERTLLTTALRHTQG 443 S+ +P AT + + +L + + L E + +ER ++ A+ T G Sbjct: 430 DSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAIGETGG 489 Query: 444 HKQEAARLLGWGRNTLTRKLKELGME 469 ++ AA +LG RNTL ++L E E Sbjct: 490 NQARAAEILGITRNTLKKRLDEYSAE 515 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/471 (43%), Positives = 291/471 (61%), Gaps = 28/471 (5%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +VDDD IRW+L++ L G+ + AE ALA V D+ +P +G+ LL Sbjct: 7 IVDDDEGIRWILDKVLQEEGVDVVQAGSIAEAKAALADGDFSVTFLDVYLPDGNGMDLLA 66 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 +PV+++TA + A AY+ GA +YLPKPFD+DE L+ R + Q+ Sbjct: 67 SGLS----MPVVMLTAETTFGHAAEAYRMGAMEYLPKPFDLDEVRQLLSR-VRPAQKASA 121 Query: 128 PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187 P +G IIG +PAMQ +FR +GR++ S ++VLI GESGTGKE+VA LH S R Sbjct: 122 PAQKMADGL---IIGRSPAMQQMFRTLGRVASSDLTVLITGESGTGKEMVAKTLHERSQR 178 Query: 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD 247 A F+A+N AAIP DL+ESELFGHEKG+FTGA+ +R+GRF QADGGTLFLDEIGDMPL Sbjct: 179 ADKAFVAINTAAIPADLLESELFGHEKGSFTGADKMREGRFVQADGGTLFLDEIGDMPLA 238 Query: 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 +Q +LLRVL +G+ RVGG V+VR++AATHQNL ++ +G+FREDL++RLNVI V Sbjct: 239 LQAKLLRVLEEGRVQRVGGSESKVVNVRLLAATHQNLNTKIAKGEFREDLYYRLNVIPVQ 298 Query: 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWL 367 +PPLR+RR+DIP LA L+ A +ELG+E +L + L+R WPGNVR+L+N R L Sbjct: 299 IPPLRDRRDDIPELANFLLEQAVKELGMEQPILLDDAMDLLSRHDWPGNVRELKNVMRRL 358 Query: 368 TVMAAGQEVLIQDLP----------GELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 V+ G + + D+ GE E T+A++ ++ L Q + + Sbjct: 359 AVLTPGATITLTDVALALGNVDNHTGE--EETLADAVTR----CTRQYLHQLGYASATNL 412 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 HQ+LL + +P LL AL G++ + + +LG RNT+ + L + + Sbjct: 413 HQHLLEQIEP----PLLVLALEQCNGNQLKVSEMLGLNRNTVRKLLNKYNI 459 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/471 (44%), Positives = 295/471 (62%), Gaps = 14/471 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + VVDDD+ +L L G G T +GAE +E + S+ D +L D+RM GM G Sbjct: 2 RAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L IK+ +P +PV+IMTA+S ++ AVSA + GA+DYL KP D+D VERA+ H Sbjct: 62 MEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHL 121 Query: 123 QEQQQPRNV-QLNGPTT---DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + ++ N+ Q GP +IIG++PAM+++F +I ++ + +VL+ GESGTGKELVA Sbjct: 122 RLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVA 181 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH SPRA P +A+N AA+ + L+ESELFGHEKGAFTGA R+GRF AD G++FL Sbjct: 182 KALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFL 241 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ +Q +LLRV+ + + RVGG PV VDVRI+AAT+++L++ V+ G+FREDL+ Sbjct: 242 DEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLY 301 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + +PPLRER +DIP LA+HFL A + K P L R WPGNVR Sbjct: 302 YRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVR 361 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN +++ G+ V ++LP S + E+ P D A Sbjct: 362 ELENAVERAVILSVGEYVTERELP----LSAMREAGGNGAPGGAGGGAPAPGDMA----- 412 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A ++ER ++ LR T G+K EAAR+LG R TL +KLK+ G E Sbjct: 413 -GLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYGEE 462 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/464 (41%), Positives = 291/464 (62%), Gaps = 4/464 (0%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +++DD+ L R L G T + G L + DV++SD+++PG+DGL L Sbjct: 7 LLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLPGLDGLEL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +K++ Q P LP+I+MTAH + A+ A + GA+DYL KPF+++E + LVE+A+ + Sbjct: 67 VKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKAVESSRLM 126 Query: 126 QQPRNV-QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 +P + + IIG + MQ +++ IGR++ I+VLI GE+GTGKEL+A A+++H Sbjct: 127 SEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELIARAIYQH 186 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S R+ APF+A+N AAIP+ L+ESELFGHE+GAFTGA+ R GRFEQA GGTLFLDEIGDM Sbjct: 187 SDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLFLDEIGDM 246 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 L+ Q +LLRVL + +R+GG P+ +D R+IAATH++LE+ + + +FREDL++RLNV Sbjct: 247 SLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDLYYRLNVA 306 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + P LR R EDIP L R+ +Q+ + +E+ + PE L WPGNVR+LEN Sbjct: 307 VIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNVRELENVV 366 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 R + ++A + I+ + + + V E+ + S A + + RA R + + + Sbjct: 367 RQVLLLAGRYTISIEHVREVV--AKVGEAVAGGN-QSIAAGIGTYLSRARRGEMEGVHAT 423 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER L A+ QG++ +AAR LG R T+ KL G+ Sbjct: 424 VIEEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLNHFGL 467 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 201/476 (42%), Positives = 287/476 (60%), Gaps = 31/476 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V VVDD+ S+R L L T NG + + L PDVL++DIRMP Sbjct: 1 MVKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEK 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG LL+QIK +PVI+MTA + A+ A + GAFDY+ KPFD+DE + L++RA++ Sbjct: 61 DGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVA 120 Query: 121 H------YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + + Q+P + +IIG +P+M++V++ IGR++ S+ +VLI GESGTGK Sbjct: 121 QSDTVATFPQAQEPAS----STGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGK 176 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+H +S R PFI +N A +P L+ESELFG+EKGAFTGA++++ GRFE A G Sbjct: 177 ELVARAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEG 236 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 T+F DEIG++ L Q +LLR + + +F RVGG +KV+VRI+AAT++ L+Q V+EG+FR Sbjct: 237 TIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFR 296 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF RLNV+ + +PPLR+R+EDIP L HFL +E E K E L WP Sbjct: 297 EDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWP 356 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+LEN +MA G ++ +D+ + + SQ QP L Sbjct: 357 GNVRELENVVERSIIMARGAIIVPEDI-------QLGATVSQ-QPTELEIL--------- 399 Query: 415 RSGHQNL-LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +NL L + ++ER ++ AL + A++L R +L K+KELG+E Sbjct: 400 ---DENLSLKQIISDVERKVILKALEENNWCRTTVAKVLKINRRSLYAKMKELGIE 452 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 186/390 (47%), Positives = 257/390 (65%), Gaps = 15/390 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAE-VLEALASKTPDVLLSDIRMPGMDGLA 64 + V+DDD+ IR+ L R L+ G T NG + V+ PD++L D+RM GM G+ Sbjct: 10 ILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDVRMSGMGGIE 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE-------- 116 L+ I+ +P VI+MTA A+ A + GAFDY+ KPFD + +AL + Sbjct: 70 ALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALADAALKTRAD 129 Query: 117 -RAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 RA+S Y+ + + I+G +P MQ+VF+IIG+++ S ++V+I GESGTGKE Sbjct: 130 LRAVSDYKP-----TINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESGTGKE 184 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA ++ +HS R+ PFIA+N AAIP +LIESELFGHEKG+FTGA R G+FE DGGT Sbjct: 185 LVARSIWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELCDGGT 244 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDM L QT++LRVL G+ RVGG ++VDVR++AAT+++LE V+ FRE Sbjct: 245 IFLDEIGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAKTFRE 304 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+R+ +PPLRER EDIP++ LQ ++ A + PE AALTR +WPG Sbjct: 305 DLYYRLNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRHSWPG 364 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGEL 385 NVR+LEN V+A G+ +L +DLP EL Sbjct: 365 NVRELENVIYRSAVIAQGEAILEKDLPAEL 394 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 362 bits (929), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 286/468 (61%), Gaps = 9/468 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD +R ER LA G T +G + A+ PD+++ D+RMPG+ GL Sbjct: 8 ILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMPGISGLEA 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +++ P LPVIIMTA D A+ A + GA+DY+ KPFDI E + L+E+A++ + Sbjct: 68 YAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKAVAAGRSM 127 Query: 126 QQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + V G IIG + AMQD+++ IGR + + +VLI GESGTGKELVA A+ Sbjct: 128 RSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVARAV 187 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 ++HS RA PF+ +N AIP+ L+ESELFG+EKGAFTGA + G+ EQA+ GT+FLDEI Sbjct: 188 YQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRGTVFLDEI 247 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMPL +Q ++LR+L + R+GG + VDVRIIAAT+++LE V+ G+FREDL++RL Sbjct: 248 GDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFREDLYYRL 307 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V+ + +PPLRER DIP L R+FL +RE+G + E A LT WPGNVR+L Sbjct: 308 KVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWPGNVRELG 367 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP-DSWATLLAQWADRALRSGHQN 420 NT + + G + ++ E ++ P DS LA++ R L SG ++ Sbjct: 368 NTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDS----LARYVRRELASGRES 423 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + ++ AL T G++ +AARLLG R TL K+++ G+ Sbjct: 424 LFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEKYGL 471 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 360 bits (924), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 190/463 (41%), Positives = 290/463 (62%), Gaps = 6/463 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V V+DD++++R VL L G T ENG + L D++++D+ MP + G+ + Sbjct: 4 VLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGMEV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L I+ +P +PVII+TAH +D+AV A + GAFDY+ KPFD E ++V +A + Sbjct: 64 LGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNESA 123 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 ++ + IIG++ +Q+V++II +++ + +VLI GESGTGKEL+A ALH S Sbjct: 124 RRSVRPDVKARAA-IIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGAS 182 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PFI +N AAIP L+ESELFG+E+GAFTGA T + GRFE AD GTLFLDEIG++P Sbjct: 183 SRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIP 242 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 +++Q +LLR + +G+F RVGG +VDVR++AAT+++L+ ++ G+FR+DL++RL V+ Sbjct: 243 VEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVP 302 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + LP LRERR D+P LARHF++ R L + + + + A L AWPGN+R+LEN Sbjct: 303 ISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLIE 362 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + + A G + +DLP + + T ++ + + A+ +A G ++++ Sbjct: 363 RVLLFADGPLITARDLPEPVRQGTGVQAGANL-----ASAVASIDVPTGEVGLKDIVRMK 417 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELER L+ L T G+ AARLL R +L K+KE G+ Sbjct: 418 AAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 359 bits (922), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 203/470 (43%), Positives = 287/470 (61%), Gaps = 9/470 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD++++R VL L+ G T E+G E L L D++++D+RMP +DG+ L Sbjct: 8 ILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDGMDL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS--HYQ 123 L+ + P PV+++TAH +D AV A + GAFDY+ KPFD +E +V++A+ Sbjct: 68 LRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRTRDLA 127 Query: 124 EQQQPRNVQLNGPT--TD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 R+V P +D IIGE+P +Q+++ I+ R++ + +VLI+GESGTGKELVA Sbjct: 128 SADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESGTGKELVA 187 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH +S R PFI +N AAIPKDL+ESELFG+E+GAFTGA + GRFE A GGTLFL Sbjct: 188 RALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFL 247 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++P ++Q +LLRVL + +F RVGG + VDVR++AAT+++L++ + G FREDLF Sbjct: 248 DEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLF 307 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + LP LR+RR DIP L HF+ L + + PE L AWPGN+R Sbjct: 308 YRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASHAWPGNIR 367 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN + A G + + DLP E+ A S A A + G Sbjct: 368 ELENVVERALLFADGARIRLDDLPEEIRGG--ATSAPGAALPLAAAAADTSAAPSTPDGL 425 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + A +LER L+ AL+ T G+ AARLL R L K+KEL + Sbjct: 426 KEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMKELNL 475 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 281/473 (59%), Gaps = 31/473 (6%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 VVDD+ + +L AL+ G+ T NG L+ L + D+++SD RMPGMDG LL Sbjct: 7 VVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMDGPQLLG 66 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH---YQE 124 +IKQR+P LPVI+MTA+S + AV + + GA+DY+ KPFDIDE V +A+ ++ Sbjct: 67 EIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDILKD 126 Query: 125 QQQPRNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 Q+ R D ++G++PA + V + + + S+ ++L+ GESGTGKE+VA A+H+ Sbjct: 127 NQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHK 186 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 H RA PF+A+N AAIP+ L+ESE+FGH KGAFTGA R GRF+QAD GTLFLDE+GD Sbjct: 187 HGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGD 246 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 MPL +Q ++LR L + VG KVDVR+IAAT++NL + V +FREDL++RLNV Sbjct: 247 MPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNV 306 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + LP LRER EDI LARHF G PE A+ AWPGN+R+L+N Sbjct: 307 FPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQNC 366 Query: 364 CRWLTVMAAGQEVLIQDLPGELF-------ESTVAESTSQMQPDSWATLLAQWADRALRS 416 T++A GQ + +DLPG LF ES+ A S P LA Sbjct: 367 VERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALA--------- 417 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+E+ + AL+ + G + AA+L+G + +LK+LG++ Sbjct: 418 -----------EVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQ 459 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 357 bits (917), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 200/469 (42%), Positives = 274/469 (58%), Gaps = 14/469 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V ++DD+ I + L+ AL T + L +A + PD ++ D+R+P M GL Sbjct: 4 VLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSGLDA 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 I++ P LPVI++TAH + A+ A ++GAF+YL KP D+ + ++ RA Q Sbjct: 64 FLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMRLAQ 123 Query: 126 QQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 P P D I+G+ PAM DV++ IGR++ + VLI GESGTGKELVA Sbjct: 124 VAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVAR 183 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 AL+ HSPR+ PF+A+N AAIP L+ESELFGHEKGAFTGA+ R G+FEQA GGT+FLD Sbjct: 184 ALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLD 243 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMP Q ++LR+L D +F RVGG V+ DVR+IAAT+++L V++ KFREDL + Sbjct: 244 EIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLY 303 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLN V LPPLR+R DI L HF+ A R+L + + A L WPGNVR+ Sbjct: 304 RLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGNVRE 363 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N R+ V A G+ + LP L + P A L LR G Sbjct: 364 LQNAMRYAVVQAVGEVITPDCLPASLRGAAA--------PPGDALELTALITSLLRVGAT 415 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ + ++R LLT L H G++++AA LG R TL KL+ LG+ Sbjct: 416 DIYRQVTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 357 bits (917), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 217/474 (45%), Positives = 294/474 (62%), Gaps = 22/474 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 RG V +VDDD ++ VL L AGLT +G E L LASK DV++SD+RMPGMDG Sbjct: 6 RGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPGMDG 65 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L ++ + P +PVI++TAH + AV A + GA D++ KPFD +E + V +A+ Sbjct: 66 LQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLRA 125 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 Q ++ + V+ PT IG + AM DV ++ + + + +VL+ GESGTGKEL A A+H Sbjct: 126 QGEEARQQVR---PTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 SPR PF+ L+ AA+P L+ESELFG+EKGAFTGA T + GR E A GGTLFLDE+G Sbjct: 183 DASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 D+ VQ +LLRV+ + + R+GG VKVDVR +AATHQ LE+RV+EG+FREDLF+RLN Sbjct: 243 DISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLN 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ V +P LRER +DI LA HFL+V A+ G L + AAL WPGNVRQL+N Sbjct: 303 VVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVRQLQN 362 Query: 363 TCRWLTVMA-----AGQEVLIQDL---PGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 L V++ G+EVL Q+L PG L + A +T + T+ + R L Sbjct: 363 FLERLVVLSDTQVIGGREVL-QELARQPG-LAPAPFA-ATPSVSALEAPTVPVTDSARTL 419 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 S + E+ER + AL+ ++ AARLLG R TL KL+E G+ Sbjct: 420 ESQRK--------EMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 357 bits (915), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 187/468 (39%), Positives = 285/468 (60%), Gaps = 18/468 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ + +L+ L G T N + L+ + ++ PD +L DIR+P DG+ + Sbjct: 4 VLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGIEV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 + ++KQ +PVI+MTA + A+ A +QGA DYL KP ++DE V V+++I + Sbjct: 64 MDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQRLV 123 Query: 126 QQPRNV--QLNGPTTDI---IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + +L+ T + IG++ MQDVF+ IG++ S I+VLI GESGTGKE+VA Sbjct: 124 SEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVART 183 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +S R+ PFI +N A IP+ L+ESELFGHEKG+FTGA + + G+FE A G +FLDE Sbjct: 184 IHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDE 243 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++PL Q +LLRVL + +F RVGG ++VDVRI+AAT++NLE VQEGKFREDL++R Sbjct: 244 IGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYR 303 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ V LPPLRER+EDI L +F++ AR+ + E + AWPGNVR++ Sbjct: 304 LNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVREI 363 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 +N C VMA +++ D+P + ++ + A + +L + + Sbjct: 364 KNVCEQAVVMARNSVLMLDDMP------LIGNGNGFLEFKNNAKI-------SLDTNDKR 410 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + E+E+ ++ +L ++Q A+ LG R +L K+KE + Sbjct: 411 SLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/470 (40%), Positives = 301/470 (64%), Gaps = 24/470 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ + +L L G T +G E ++ L D++L+D++MPGMDG+ L Sbjct: 4 ILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGMEL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +++IK R P LPV++MTA+ +D ++A ++GA+ Y+ KPF ++ + V++A++ Y+ Sbjct: 64 MERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRVV 123 Query: 126 QQPRNV--QLNGPTT--DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q+ R + +L + +IIG++PAM ++F I +++ ++ +VLI GESGTGKE+VA ++ Sbjct: 124 QENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSI 183 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R AP++A+N AA+ + ++ESELFGHEKGAFTGA +++GRFE ADGGTLFLDEI Sbjct: 184 HFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEI 243 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++ +Q +LLRVL + F RVGG P++VD+R+IAAT+++L++ V+ FREDLF+RL Sbjct: 244 GEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRL 303 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL--LHPETEAALTRLAWPGNVRQ 359 NV+ + LPPLRER++DIP L HFLQ A E+++ +HP+ AWPGNVR+ Sbjct: 304 NVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRE 363 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN ++ + + DLP EL S +T M+ L ++ Sbjct: 364 LENVIERAIILCNSDAISVNDLPRELTRSV--SNTLHMEGIPVDATL-----------YE 410 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L Q ++R +L + + Q H AA++LG G++ L +K+K+ G++ Sbjct: 411 TLSMVEQAMIKRAMLMS--DNVQSH---AAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 355 bits (911), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 201/482 (41%), Positives = 298/482 (61%), Gaps = 25/482 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ +R +R LAG G G + ++ + + P++++ D+RMPGMDGL Sbjct: 4 ILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGLTA 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ I++ LPV+IMTA+S + A+ A + GAFDY+ KPF+I + +AL+E+A+ + Sbjct: 64 LRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGRRM 123 Query: 126 QQPRNVQLNGPTTD--------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ +G ++G + AM V++ IGR + + VL+ GESGTGKELV Sbjct: 124 RARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELV 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+++HS R + PF+ +N AIP L+ESELFG+EKGAFTGA R G+ EQA+GGT+F Sbjct: 184 ARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTVF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDMPL +Q +LLR+L + Q R+GG P+ VDVRIIAAT+ +LE V +G+FREDL Sbjct: 244 LDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RL V+ + LPPLRER EDIP LAR+FL +RE+ + + PE A L WPGNV Sbjct: 304 YYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSW--ATLLAQWADRALR 415 R+L N+ V + G + DL L E++ ++P S A L+ AD+ ++ Sbjct: 364 RELGNSVHKALVFSRGGPLGEPDLKQAL------EASRGVRPGSEGPACDLSLAADQTMQ 417 Query: 416 SGHQNLLSEAQPE---------LERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + LSE+ + + R ++ AL T G++ AARLLG R TL K+++ Sbjct: 418 ELIRRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKY 477 Query: 467 GM 468 G+ Sbjct: 478 GL 479 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 354 bits (909), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 198/468 (42%), Positives = 279/468 (59%), Gaps = 26/468 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +V+D+ ++R VL L G + E+ + L +A + P ++L+D R+PGM Sbjct: 1 MRSQKILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G LL +IK+R P PV+I TA+ +++ AV A + GA YL KP D E VA++ +A+S Sbjct: 61 SGTELLARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALS 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 PR+ L P IIGE+P ++ +I ++ + +VLI GESGTGKE+VA Sbjct: 121 CRGHTNPPRSQDL--PRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARG 178 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH SPRA APF+A N AIP DL+ESE+FGHEKGAFTGA + G+ E A GTLFLDE Sbjct: 179 LHVASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDE 238 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GDMPL +Q +LLR L + ++ R+GG P+++ RIIAATH +L + V+ G FREDL++R Sbjct: 239 VGDMPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYR 298 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI +H+PPLRERRED+ L HFL+ ELG + AA+ +WPGN+RQL Sbjct: 299 LNVIPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQL 358 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN L V+ G +L DLP E+ + T +++P A L Sbjct: 359 ENIVERLVVLNRGGTILAADLPNEMRTT----ETERIRPFGGAYDLHA------------ 402 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +ER + +AL Q +K +AA LLG R L ++K LG+ Sbjct: 403 --------VEREAVVSALNKAQSNKSQAALLLGISRKQLHTRMKNLGL 442 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 353 bits (907), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 196/474 (41%), Positives = 274/474 (57%), Gaps = 23/474 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + + +DD R L L G +NG + ++A +++++D++MP Sbjct: 12 MKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPNG 71 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LLK +K +P VI+MT + +D+AV A + GAFDY+ KP D V RA+S Sbjct: 72 DGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRALS 131 Query: 121 HYQEQQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + Q++ NV L + ++G + M+ +F I ++++S +V+I GESGTGK Sbjct: 132 YASLQEE--NVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGK 189 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+H +S R P I +N AIP+DL+ESELFGHEKGAFTGA R GRFE A GG Sbjct: 190 ELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGG 249 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 ++FLDEIGDM +Q ++LRV+ + QF R+GG + DVRIIAATHQNLE V E +FR Sbjct: 250 SIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFR 309 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF+R+NVI +HLP LRER DI LA HFLQ A+ E PE A + WP Sbjct: 310 EDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWP 369 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+LEN L VM E+ ++DLP ++ Q + ++ + Q + + Sbjct: 370 GNVRELENLIEMLVVMKEDGEIKLEDLPSKI---------RQFKKETQSFKEYQIPEEGI 420 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ + E+ +L AL T G K AA+LL R TL KLK L + Sbjct: 421 D------FNDVVYQFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKRLNI 468 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 353 bits (907), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 184/456 (40%), Positives = 283/456 (62%), Gaps = 21/456 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V+DD+ + W LE+ L G T G L+ + +TP +++ D++MP MDGL + Sbjct: 7 ILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLEV 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA--ISHYQ 123 L + K P LP+I++TAH +D A+ A + GA DY+ KPFD+DE ++ +A ++H Q Sbjct: 67 LVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHLQ 126 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 E+ +LN I+G + A+ DV +I +++ S+ +VL+ GESGTGKE+ A ++H+ Sbjct: 127 EEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQ 186 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S R PF+ +N AA+P+ L+ESELFGHEKGAFTGA + GRFE A+ GTLFLDEI + Sbjct: 187 LSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITE 246 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 MPL +Q +LLRVL + +F RVGG +K+DVR+IAAT+++ + +++G FREDLF+RLNV Sbjct: 247 MPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNV 306 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + +HLPPLRER EDIP LA HF++ + + + PE L WPGN+R+L+N Sbjct: 307 LPIHLPPLRERTEDIPLLAMHFIKKFNPS---QEQRMSPEAMGLLISYEWPGNIRELQNV 363 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 ++A G E+ LP E+ + +++ ++ L+ + D + Sbjct: 364 IERSIILAQGNEIKPHHLPKEI------QKLDEVKNETTHGLIINFPDDGI--------- 408 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 + E+E+ L+ AL + G++ AA+LLG R+ L Sbjct: 409 -SFDEVEKELILKALEKSNGNQTRAAQLLGITRSAL 443 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 201/470 (42%), Positives = 282/470 (60%), Gaps = 16/470 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V DD+ SIR +L L G G +G + L+ LA++ DVLL D+RMP DGL + Sbjct: 7 ILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLVV 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++ HP L ++M+A+ + A+ A GAFDY+ KPF DE V ++ +A + Sbjct: 67 LREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERLV 126 Query: 126 QQPRNV-QLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ R + Q + P+T I+GE+PA+ + R + RL+ +VLI+GESGTGKEL+A L Sbjct: 127 RENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIAREL 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H SPRA F+A+N AIP LIESELFGH KGAFT A T ++G F +ADGGTLFLDE+ Sbjct: 187 HVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDEV 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++PL Q +LLRVL +G+ VG KV+VR++AAT ++L + V +G FREDL++RL Sbjct: 247 GELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYRL 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL--LHPETEAALTRLAWPGNVRQ 359 NV+ + +PPLRERRED+P LAR F+ REL E + L E EA L AWPGNVR+ Sbjct: 307 NVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVRE 366 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN ++A +L +LP L+ ++ + D L+ G Sbjct: 367 LENAMERAVLLADEPHILPANLPERLWAASPPGPHGE----------KPHGDPVLQGGGD 416 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A ELE + + ALR T+G++ AA LL L K+KE G++ Sbjct: 417 LSLKRAIRELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGID 466 >UniRef50_B2VA05 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Aquificales RepID=B2VA05_SULSY Length = 459 Score = 351 bits (900), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 287/464 (61%), Gaps = 16/464 (3%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 + +D+ + R VL+R L + FE + L ++ PD + DI + G +GL LLK Sbjct: 6 IFEDEKTTRNVLKRILHKENVEAYEFEEAPKDLNVISQYKPDFIFLDIGLKGSNGLELLK 65 Query: 68 QIK--QRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +I + HP V+I++ HS+ + A + GA+DY+ KPFDI+ +++ I+ +E Sbjct: 66 KISTLEDHPY--VVIISGHSEYKYLIEAMKHGAYDYITKPFDIER----IKQVINEIKEC 119 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + + V P+ +I+G++PAM+++F+++GR + S+ V+I+GESGTGKE++A+ +H+HS Sbjct: 120 LKAKVVS-EVPSQEIVGKSPAMREIFKLVGRAAVSNDPVIISGESGTGKEVIANLIHKHS 178 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 RA FIALNMA+IP LIESELFG+EKGAFTGA+ ++G+F QA+GGT+FLDEIG+MP Sbjct: 179 NRADKSFIALNMASIPIGLIESELFGYEKGAFTGADKSKEGKFLQANGGTIFLDEIGEMP 238 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L+ Q +LLRVL + + +G K+DVR+IAAT+++L + V EGKFREDLF+RL+VI Sbjct: 239 LEAQAKLLRVLQEMEITPIGSKKSYKIDVRVIAATNKDLIKLVAEGKFREDLFYRLSVIE 298 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + LPPLRER+EDIP L F + A +++ E+ L +WPGNVR+L+N Sbjct: 299 IKLPPLRERKEDIPELVELFTKQALERYNLKSGGFTQESIKFLVNYSWPGNVRELKNLVF 358 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 L M + + LP + + Q W + + L +N+ + Sbjct: 359 KLIAMYRERPITPDLLPANI-------KGEEEQTGDWRSGFLTEVRKLLTRKRKNIYIKL 411 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E E L+ L+ T+G+ A++ LG RNT+++K+K+L ++ Sbjct: 412 IEEAEYILIKETLKFTEGNISLASKYLGLHRNTISKKIKDLEID 455 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 351 bits (900), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 200/470 (42%), Positives = 279/470 (59%), Gaps = 23/470 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 +V VVDDD R V L G +GAE L LA P ++SD++MP +DG+A Sbjct: 621 LVLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIA 680 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L++++ P LPV+++TAH+ ++ AV A ++GA YL KP DE ++ A++H E Sbjct: 681 LMERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAH--E 738 Query: 125 QQQPRNVQLNGPTT------DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++L G +I+G APAM++VF ++ +++ + +VL+ GE+GTGKELVA Sbjct: 739 RARRDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVA 798 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+HR SPR PF+A+N AIPKDL+ESE FGHEKGAFTGA R GRFEQADG TLFL Sbjct: 799 RAIHRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFL 858 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+GD+ L +Q +LLRVL + + RVG P+KVDVRI+AAT+++LE V EG+FR+DLF Sbjct: 859 DEVGDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLF 918 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + LPPLRER +D+P L HFL+ A+ G + + P+ AA WPGNVR Sbjct: 919 YRLNVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVR 978 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N C +M I A + +PD+ A + + L Sbjct: 979 ELRNLCERAVLMGWAAVAPIFG----------AGAGVTPRPDAGAGVPVDTS-LPLLEAR 1027 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 Q L+ ER LT L+ +G E AR G L K+K G+ Sbjct: 1028 QRLVE----RFEREYLTRLLKERRGRIGEVARAAGIAERNLYEKMKAYGL 1073 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 350 bits (899), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 183/495 (36%), Positives = 293/495 (59%), Gaps = 41/495 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ ++R VL+ L G +G E LE L + DV+++D++MP + GL L Sbjct: 4 VLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLGL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI-----S 120 L+ + +P PVII+TAH ++ AV A ++GAFDY+ KPFD DE ++++E+AI + Sbjct: 64 LEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRIKN 123 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 H + + G I+G + ++++++ I +++ + ++LI GE+GTGKEL+AHA Sbjct: 124 HGEVILAEEEIDKYG----IVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHA 179 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +HR SPR +I +N AI K+LIE+ELFG+EKGAFTGA + + G+FE AD GT+FLDE Sbjct: 180 IHRGSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDE 239 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++P D+Q +LL+VL D F RVGG ++VDVRIIAAT+++L + ++EG FREDL++R Sbjct: 240 IGEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYR 299 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + +PPLRER+EDI L +FL +L ++ K + P+ + WPGN+R+L Sbjct: 300 LNVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGE--------LFESTVAEST-------SQMQPDSWATL 405 EN + ++ G + +D+P E L E+ V E +M+ + + Sbjct: 360 ENLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERLV 419 Query: 406 LAQWADRALRSG-----------------HQNLLSEAQPELERTLLTTALRHTQGHKQEA 448 L +++ +G ++ + E+E+ ++ L G+ A Sbjct: 420 LMARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECSGNITHA 479 Query: 449 ARLLGWGRNTLTRKL 463 A+ LG+ R L K+ Sbjct: 480 AKRLGFSRKGLQIKM 494 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 198/459 (43%), Positives = 275/459 (59%), Gaps = 24/459 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD S +L+ L G G NG + LE + K D++L DIRM MDG+ Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIET 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+IK +P +PV+IMTA+S +D AV A + GA DYL KP D D+ + A++H + Sbjct: 68 LKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEALAHTRLS 127 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + P + ++G++PAM+ + I ++ S +VLI+GESGTGKELVA ALH S Sbjct: 128 ESPVT-ETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASS 186 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R++ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEIGD+ Sbjct: 187 ARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 +Q RLLR + + + RVG + VDVR+IAATH++L + V G+FR+DL++RLNV+ Sbjct: 247 PLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVT 306 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +PPLR RREDIP LAR+FLQ A + P+ L AWPGN+R+LEN Sbjct: 307 IDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRELENAVE 366 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 V+ G+ + ++LP + + VA++ DS L+ Sbjct: 367 RAVVLLTGEYISERELPLAITGTPVADAPH--GDDSIQPLV------------------- 405 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 E+E+ + AL T G+K EAAR LG R TL KL Sbjct: 406 --EVEKEAILAALERTGGNKTEAARRLGITRKTLLAKLS 442 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 206/514 (40%), Positives = 290/514 (56%), Gaps = 52/514 (10%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASK--TPDVLLSDIRMPGMDG 62 ++ V+DDD+ +R+ L R L+ +G E + L K PDV+ D+RM GM G Sbjct: 8 VILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGV-GLVKKGPAPDVVFLDVRMGGMSG 66 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+ I+ +P VI+MTA A+ A + GAFDY+ KPFD + +AL E A+ + Sbjct: 67 LEALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAENALKAH 126 Query: 123 QE-----QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + +P + ++ I+G +P MQDVF+I+G+++ S ++V+I GESGTGKELV Sbjct: 127 HDMRAAGEYKP-TINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGTGKELV 185 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ++ +HS RA FIA+N AAIP +LIESELFGHEKG+FTGA R G+FE D GT+F Sbjct: 186 ARSIWKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRIGKFELCDRGTIF 245 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM L QT++LRVL G+ RVGG +KVDVRIIAAT+++LE V+ FREDL Sbjct: 246 LDEIGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKTFREDL 305 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+R+ +PPLRER DIP++ LQ ++ + PE L R WPGNV Sbjct: 306 YYRLNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGKVSPEAMNILARHDWPGNV 365 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFES-------------------TVAESTSQMQ 398 R+LEN V+A G +L +DLP E+ ++ + S +Q Sbjct: 366 RELENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLATAVSTTTPSPPPPPNIERSMLNVQ 425 Query: 399 PDSWATLLAQWA-------------------DRALRSGHQNLLSEAQPE-----LERTLL 434 + A A + AL H L A E LER ++ Sbjct: 426 RSVFDGEAASPATIAAPSPPPPPSTTATPTLESALDFLHHELTITADIEPILKRLEREMI 485 Query: 435 TTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 R T G+ ++A LLG R TL ++L+EL + Sbjct: 486 ARVYRATDGNIAKSADLLGITRPTLKKRLEELAL 519 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 179/468 (38%), Positives = 280/468 (59%), Gaps = 24/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +V+DD ++R + L G T+ ++GA+ L L S+ D+ + D+++PG+DGL L Sbjct: 5 IIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDGLTL 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK IK P VII+TA +++ AV A + GAFDY+ KPF +E + ++ER + + Sbjct: 65 LKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFRTLE 124 Query: 126 QQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + V+ I+ + M+++F I ++++ + VLI GESGTGKEL+A+A+ Sbjct: 125 KEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANAI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 + S R + P+I +N AAIP+ L ESELFG+EKGAFTGA ++G+FE A+GGT+F DEI Sbjct: 185 QKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDEI 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMPL +Q +LLRV+ DG YR+GG P+K++VR I AT +NL++ ++ KFREDLF+R+ Sbjct: 245 GDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYRI 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPL+ER+EDIP L FL++ + + G + + P AL +PGNVR+L+ Sbjct: 305 NVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVRELK 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 + +++ + I+ LP E + L+ + + S Sbjct: 365 HAIERALLLSKDGVIDIKHLPEEF------------------SPLSSFQKKCFISNFS-- 404 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E+ L+ AL+ K EAA+ LG R L K+K G+E Sbjct: 405 LKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIKFYGIE 452 >UniRef50_Q2G705 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=cellular organisms RepID=Q2G705_NOVAD Length = 477 Score = 348 bits (893), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 206/472 (43%), Positives = 294/472 (62%), Gaps = 17/472 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +V+DD+SI V+ AL G T ++ A L+++T D+LL+D+ + DG+ Sbjct: 5 VLLVEDDASIALVITAALEAEGFTVDRCDSIAGRDRLLSAQTYDLLLTDVMLTDGDGIET 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE- 124 L +++ HP LP+II++A + LD AV A GAF+Y PKPFD++E V V +AI + Sbjct: 65 LGPVREAHPTLPIIILSAQNTLDTAVRASDTGAFEYFPKPFDLEELVRTVTQAIGNAGGV 124 Query: 125 -QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + P++V P ++G + AMQ V+R+I R+ R+ ++VLI GESGTGKELVA A+H+ Sbjct: 125 GAELPQDVPQGLP---LVGRSSAMQAVYRMITRVLRNDLTVLILGESGTGKELVAEAIHQ 181 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 R PF+A+N AAIP +LIESELFGHEKGAFTGA G+FEQA GGTLFLDEIGD Sbjct: 182 LGNRRSGPFVAVNTAAIPAELIESELFGHEKGAFTGAVARSIGKFEQASGGTLFLDEIGD 241 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 MP+ QTRLLR L G+ RVGG + +D RI+AAT+++L + G FREDL++RL V Sbjct: 242 MPMQAQTRLLRALQSGRIRRVGGREEIILDCRIVAATNRDLLPMIAAGTFREDLYYRLAV 301 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + + LPPLRER +DIP L++HFL AA E G+ + L L+R W GNVR+L N Sbjct: 302 VPIELPPLRERADDIPALSQHFLAKAALE-GLPRRQLTQAGADLLSRQPWRGNVRELRNF 360 Query: 364 CRWLTVMAAGQEV---LIQDLPGELFESTVAESTSQM---QPDSWATLLAQW-ADRALRS 416 L ++A + + I+ L + E+T A +S+ +P A+ +A W + + L+ Sbjct: 361 VYRLALLARDEVIDASTIEPLLAQ--EATGAARSSESDERRPSDLASAVAAWLSAQNLQP 418 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 G + A ER L L T G++ AA++LG RNTL ++L +L + Sbjct: 419 GE--VYDAALAAFERPLFLQILALTGGNQLRAAQILGINRNTLRKRLSDLNI 468 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 348 bits (892), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 204/471 (43%), Positives = 281/471 (59%), Gaps = 16/471 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 ++ V D SI + RAL A ++ A+ L + + PD +L D++ PG G Sbjct: 4 VLLVNDTPGSIAEPVRRALR-ASHHVAVAQSVADCLARVTATPPDAILLDLQHPGRGGFD 62 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI-------DEAVALVER 117 I+ +PVI + + + A ++GA D + KP D+ DEA+ R Sbjct: 63 AFDAIRSVDTRVPVIFLAPAAAAGVVIEAIKRGASDCVFKPLDLVQLQKALDEALDAAGR 122 Query: 118 AISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ +P +G T IIG PAM +V++ +GR++ + VLI GESGTGKELV Sbjct: 123 V---HEPDTRPDPGTDDGGTGPIIGSCPAMMEVYKAVGRVAPQDVPVLITGESGTGKELV 179 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H++S RA PF+ALN AAIP+ L+ESELFGHEKGAFTGA+ R GRFEQ DGGTLF Sbjct: 180 ARAVHQYSRRAGRPFVALNCAAIPEQLLESELFGHEKGAFTGADRRRIGRFEQCDGGTLF 239 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDMPL +Q++LLRVL + F RVGG V+ DVRII+ATH++L+ R G FR DL Sbjct: 240 LDEIGDMPLALQSKLLRVLQEQAFERVGGGETVRTDVRIISATHRDLKARAAAGTFRPDL 299 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RL V + LPPLR+R ED+P L RHFL RELG + E A LT+ AWPGN+ Sbjct: 300 YYRLGVFTMRLPPLRDRAEDLPLLVRHFLGRFNRELGRRVSDISAEALARLTQYAWPGNL 359 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L++ + + G + LP L + + +P + A L Q+ R L G Sbjct: 360 RELQSVLKQALLRTTGTVL----LPSALADMAGPSAAPASEPPARAD-LHQFVRRRLSDG 414 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +NLL EA+ EL+R LL + T+G++ AAR+LG R TL R+L ELG+ Sbjct: 415 SENLLEEARLELDRFLLPMVMELTRGNQVRAARVLGVARLTLRRRLHELGI 465 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 347 bits (889), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 191/469 (40%), Positives = 282/469 (60%), Gaps = 31/469 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDDD S+R VLE L G T +G E L P ++++D++MPGM G L Sbjct: 11 VLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQL 70 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS----H 121 L+++K+R P VI++TA ++AAV A + GA+D++ KPF+ + V +A+ Sbjct: 71 LREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQGLS 130 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + ++ + IIG +P M++VFR+I R++ + +VLI GESGTGKELVA A+ Sbjct: 131 RENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARAI 190 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R APF+A+N AAIP+DL+ESELFGH KGAFTGA ++G+F QA+ GTLFLDE+ Sbjct: 191 HNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDEV 250 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P+++Q++LLR L + + VGG +K+DVR++AAT+ +LE+ + EG+FREDLF+RL Sbjct: 251 GELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYRL 310 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +VI VHLPPLRER+EDIP L RHF AA+ G PE A + WPGNVR+LE Sbjct: 311 SVIPVHLPPLRERKEDIPLLVRHF---AAKHGGASVT-FSPEILAVMAAYGWPGNVRELE 366 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQM--QPDSWATLLAQWADRALRSGHQ 419 NT + +M + DLP ++ + ++ PD +L Sbjct: 367 NTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSL-------------- 412 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +LER ++ AL ++ AAR L R+TL ++++ + Sbjct: 413 -------EQLEREIVVEALERNNWNQSSAARFLRIPRHTLIYRMEKYSI 454 >UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZS60_9PLAN Length = 479 Score = 347 bits (889), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 182/470 (38%), Positives = 290/470 (61%), Gaps = 11/470 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD ++ +++R G+ + T + AEV+ + + DVLL DI +P + GL + Sbjct: 4 ILVVDDDRAVARLVQRCFEGSNVDVLTAQRAAEVIPLIENHAVDVLLLDIMLPEISGLEI 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +QI++ LP+I +T D + + A + GA+DYL KP D+ LVERAI + + Sbjct: 64 ARQIRKIDSKLPIIFVTGRDDSETTIEAMKLGAYDYLVKPLDVGMVQELVERAIENRRLM 123 Query: 126 QQP-----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +P + N ++G +P M V++ +GR++ +++VL+ GESG+GKEL+A A Sbjct: 124 HEPVVLTPQQADENETGDLLVGRSPQMLGVYKEVGRVAAQNVNVLVRGESGSGKELIARA 183 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +++HS R PF+A+N AA+ + L+ESELFGHEKGAFTGA++ R G+FEQ +GGT+FLDE Sbjct: 184 IYQHSNRNDQPFLAVNCAALSETLLESELFGHEKGAFTGADSRRIGKFEQCNGGTIFLDE 243 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GDM L +Q ++LR+L D +F R+GG + DVRII+AT+++LE+ + +G FR DLFHR Sbjct: 244 VGDMSLTIQAKVLRLLQDQRFERLGGAETITTDVRIISATNRDLEEMIADGDFRLDLFHR 303 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L + +PPLR+R D+ +L ++FL+ ++LG E L E+ L WPGN+R+L Sbjct: 304 LKSFEIAIPPLRDRDGDLEQLVQYFLKQFNKQLGKEITGLSAESLVRLKSYDWPGNIREL 363 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELF--ESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 + R +MA + + LP E+F + + +S Q D++ L Q R G Sbjct: 364 QGVLRKSMLMATSTVLAPEWLPPEVFGEAAPMRGDSSGNQDDAFDVFLGQLESR----GS 419 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +++ +E+ +E LL+ L T G++ +AA LLG R +L K++ LG+ Sbjct: 420 EDMYAESLEWMEHRLLSFVLDKTAGNQSKAAVLLGITRGSLRHKMRALGI 469 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 347 bits (889), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 194/464 (41%), Positives = 286/464 (61%), Gaps = 16/464 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VDD+ S+ +LE +L AG T +G E LE + ++ D +++D+ MP MDGL L Sbjct: 8 ILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMPRMDGLQL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK++++ LPVII+TA ++ +A+ A + GA DY+ +PFD+ E ++RA+S + Sbjct: 68 LKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRALSFSRLV 127 Query: 126 QQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 + R ++ + TT +IG +PAMQ + I +++ +VL+ GE+GTGKELVA A+H Sbjct: 128 VENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARAIHAA 187 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 SPR A F+A+N AAIP +++ESELFGHEKGAFTGA R G+FE ADGGTLFLDE+ +M Sbjct: 188 SPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLFLDEVTEM 247 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 P+ +Q +LLR L + R+GG P+ VD+R++AAT++N +++GK REDL++RLNV Sbjct: 248 PMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDLYYRLNVF 307 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 R+ LP L+ R+ DI LA HFL A R + + A+ + L + WPGNVR+LEN Sbjct: 308 RIDLPALKARKSDIELLATHFL--AKRRVDISAQAVQ-----VLMQYDWPGNVRELENVL 360 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 +++ Q++ Q LP E+ S E AT L AD A + L Sbjct: 361 ERAAIISGNQQIQPQHLPAEMLNSN-GEFID-------ATALGHNADTAEAPQNPLCLPN 412 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A +LER L+ AL T G+K +AA+LL +L KL + G+ Sbjct: 413 AVEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQYGI 456 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 347 bits (889), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 282/467 (60%), Gaps = 30/467 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V DDD SIR +L L G + +G +V++ + +PD++L D+RMP +DG+ + Sbjct: 8 ILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKIDGIEV 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LKQ++ R +P+I+MTA + + A Q GA+DY+ KPFD+D+ + R I+ + EQ Sbjct: 68 LKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDD----ITRTINRFFEQ 123 Query: 126 QQ------PRNVQLNGP--TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q+ R + P T+ IIG +P MQ+V++ IG ++ S +VLI GE+GTGKELV Sbjct: 124 QKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELV 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H +S ++ P + +N AA+P+ L+ESELFGHEKG+FTGA+ R+GRFE A GT+F Sbjct: 184 AETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+M L Q +LLRVL + +F RVGG + +KVD R+IAAT++ LE+ V GKFREDL Sbjct: 244 LDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI +HLPPLRER+EDIP L +FLQ + E L WPGNV Sbjct: 304 FYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LENT ++A G + L +F SQ++ L++ D+ RS Sbjct: 364 RELENTIERAVILAQGGVITTHHL---VF--------SQIRTGRNID-LSEVIDKT-RS- 409 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 L EA +E ++ AL +G AA +L + L RKL+ Sbjct: 410 ----LDEAMRIIESKIILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 263/387 (67%), Gaps = 4/387 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ +V V DD+ SIR +++ L+ L T +G E L+ ++ D L DIRMP +D Sbjct: 17 EKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPKVD 76 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GLA+L+Q+ ++ +PVI++TA+ D + A ++GA+D++ KPFDID+ V +A+ Sbjct: 77 GLAVLEQLVLKN--IPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKAL-D 133 Query: 122 YQEQQQPRNVQLNGPTTDI-IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Y + + ++ + T+ + +G + AMQ+V+++IGR++ + ++VLI GESGTGKELV+ A Sbjct: 134 YSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRA 193 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +SPR K PF+ +N AAIP+DL+ESELFG+EKGAFTGA+ + G+FE A+ GT+ LDE Sbjct: 194 IHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDE 253 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM +Q ++LRVL + R+GG + VDVR++AAT+++L+ V+ G FREDL+ R Sbjct: 254 IGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFR 313 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+++ LPPLRER+EDIP LA HF++ A E E + PE AAL +PGNVR+L Sbjct: 314 LNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVREL 373 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFE 387 EN + +G+ + + LP ++ E Sbjct: 374 ENIIARAVALCSGKVLTLDVLPPQVVE 400 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 190/471 (40%), Positives = 283/471 (60%), Gaps = 11/471 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD I ++ L T A+ LE PD +L DI++P GLAL Sbjct: 7 LLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQSGLAL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 + + ++ +PVI+MT H + A++A GAF+Y+ KPF+ D + L++ A+ + Sbjct: 67 IHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALETSRMA 126 Query: 126 QQPRNVQLN-GPTTD---------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 ++P + + G D I+G PAM DVFR IGR++ +VLI GE+GTGKE Sbjct: 127 RRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILGETGTGKE 186 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 +VA A+++HS R F A+N AAIP+ L+ESELFGHE+G+FTGA+ R G+FE +GGT Sbjct: 187 VVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKFEICNGGT 246 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIGDM +QT+LLRVL + +F RVGG P+K DVRI+AAT+++LE + +G FR Sbjct: 247 LFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAMADGSFRS 306 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLN + LPPLRER ED+ R+A HF + A +LG + + PET L +WPG Sbjct: 307 DLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRLMAHSWPG 366 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L+ + + A+G ++ LP ES+ + ++ + W + +++ +R L Sbjct: 367 NVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSPGNNVEIS-NGWESEVSKEINRRLA 425 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 SG + + E++R L+ ++ T + EA+ LG R TL ++K L Sbjct: 426 SGSCTVSEDIHNEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRMKHL 476 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 191/475 (40%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +VDD+ I W L L+ AG T +G+E + L+ PD+ L DIR+P Sbjct: 1 MEHNRILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDA 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL+Q K R L VI++TA++D+D+AV A + GA DY+ KPF+++ ++++A Sbjct: 61 DGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFE 120 Query: 121 HYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKE 175 Q +++ + ++ ++G + +M ++F++I + + + +VLI GESGTGKE Sbjct: 121 KRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H HS RA+APF +N AAIP+ L+ESELFGHEKGA+T A+ R+G FE A+GGT Sbjct: 181 LVARAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDMP +Q ++L+V+ +F R+G ++ DVRIIAATHQ+L V+E +FR Sbjct: 241 VFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRG 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + LPPLRER +DIP L ++F++ E G + + PET A LT WPG Sbjct: 301 DLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L N ++ + + L E+ + + DS A+ A + Sbjct: 361 NVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHAS-----AQHSFA 415 Query: 416 SGHQNLLSE--AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 GH + + + ELER L+ L + G++ +AA+ L R+TL ++K+ GM Sbjct: 416 RGHITIPTGGISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGM 470 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 191/469 (40%), Positives = 277/469 (59%), Gaps = 26/469 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V V DD+ S+R VL+ AL G T +NG E L DV + DIRMP +DGL Sbjct: 17 VLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPEVDGLQA 76 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +I + P LP+I+MTA + AV+A + GA+DY+ KPF++DE +V RAI Q Sbjct: 77 FYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAIRMQQLT 136 Query: 126 QQ----PRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ + VQ G T I+GE+ +Q+V++IIGR++ S +VL+ GESGTGK +V Sbjct: 137 KEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGESGTGKGMV 196 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S R + PFI +N +IP+ L+ESE+FGHEKGAFT A + G+FE A+GGTLF Sbjct: 197 AKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFELAEGGTLF 256 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI +M ++Q +LLRVL + +F RVGG +VRIIAAT+++L + + E FR+DL Sbjct: 257 LDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISEKSFRKDL 316 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ + LPPL ER EDI LA +FL+ + E+G PE +WPGN+ Sbjct: 317 YYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRNYSWPGNI 376 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGEL-FESTVAESTSQMQPDSWATLLAQWADRALRS 416 R+LEN +M+ + +L ++LP + E A+ T + DS+ Sbjct: 377 RELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKP------------ 424 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 L E E+E+ ++ A+ T G++ +AA+LL R L K+ E Sbjct: 425 -----LREVLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINE 468 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 197/462 (42%), Positives = 272/462 (58%), Gaps = 34/462 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD S +L+ L G G +G E LE + D++L D+RM MDG+ Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMAEMDGIET 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE- 124 L++IK +P +PV+IMTA S ++ AV A + GA DYL KP D D +E++++H QE Sbjct: 68 LREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKSLAHAQEV 127 Query: 125 -QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + P ++ + ++G++PAMQ + I ++ S +VLI+G+SGTGKELVA ALH Sbjct: 128 AGELP---SVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHA 184 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S R+ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEIGD Sbjct: 185 SSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 + +Q RLLR + + + RVG + VDVR+IAATH++L Q G+FR+DL++RLNV Sbjct: 245 ISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNV 304 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + + P LR+RREDIP LA HFLQ A K P+ L AWPGN+R+LEN Sbjct: 305 VTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRELENA 364 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 V+ G+ + ++LP +A + P AQ Sbjct: 365 IERAVVLLTGEYISERELP-----LAIANQAMPLMP-------AQA-------------- 398 Query: 424 EAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 QP E+E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 399 -IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 189/464 (40%), Positives = 272/464 (58%), Gaps = 19/464 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V+DD+ IR L + L G T GAE + S P ++ D++M G+DGL + Sbjct: 5 ILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGLDGLEV 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-E 124 LK+++Q P V++++ H+ + AV A Q GA+D L KP D D + L+ A ++ Q Sbjct: 65 LKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFTNRQLT 124 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 ++ R + +I+G + ++ + I R++ + VLI GE+GTGKELVA A+HR Sbjct: 125 EENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVARAIHRG 184 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S RA+ PFI +N AAIP +LIESELFGH KG+FTGA R G+FEQA GGTLFLDEIGDM Sbjct: 185 SQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLDEIGDM 244 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 Q ++LRVL DG R+GG PV+VDVR++AAT+++LE+ + G+FREDL++RLNV+ Sbjct: 245 SQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYYRLNVV 304 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +P LRERREDIP L RHFLQ A G+ A+ + E L+ L WPGNVR+L NT Sbjct: 305 PITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVRELRNTM 364 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 L ++A+ + + D+ + T+ +P +LL N E Sbjct: 365 ERLVILASAASISVADI-----DRLAGRRTA--EPSGIGSLL-----------DCNTFEE 406 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + ER L LR + E AR L R+ L +K++ + Sbjct: 407 FKQAAERAFLLAKLRAFDWNVSETARALDMPRSNLYKKIERYAL 450 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 340 bits (873), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 185/472 (39%), Positives = 284/472 (60%), Gaps = 15/472 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD +R + L G + +G LEA+ K D+++ D++MPGM GL Sbjct: 4 ILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSGLEA 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--SHYQ 123 +I++ LPV++MTA+ + A+ A + GAFDY+ KPFDI + L+ +A+ H Sbjct: 64 FARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAGHMM 123 Query: 124 EQQQPRNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + NV + IIG +P MQ+V++ IGR++++ +VLI GESGTGKELVA A++ Sbjct: 124 RARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVARAIY 183 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 +HS RA PF+ +N A+P+ L+ESELFG+EKGAFTGA + R G+ EQA+GGT+FLDEIG Sbjct: 184 QHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLDEIG 243 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DMPL +Q ++LR+L + +GG A + VDVRI+AAT++NLE+ ++ FREDL++RL Sbjct: 244 DMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYYRLK 303 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ V+LPPLR+R D+ LA +F+ + ++E+ ++ L E + WPGNVR+L N Sbjct: 304 VVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVRELAN 363 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP-----DSWATLLAQWADRALRSG 417 + + + G V +D+ S V Q P ++ +WA L +G Sbjct: 364 ALKKSLIFSRGYPVRPEDI------SQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAG 417 Query: 418 HQNL-LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L ++ AL+ T+G++ +AA+LLG R TL K+ +L + Sbjct: 418 GDTARFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDKLNL 469 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 340 bits (872), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 193/471 (40%), Positives = 287/471 (60%), Gaps = 39/471 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ +R L L G +G +E L S+ +++ D++MPGMDGL + Sbjct: 8 ILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMPGMDGLQV 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ K+ P L V+IMTA++ +D AV+A + GA+DYL KPFD +E ++++ +S Q+ Sbjct: 68 LEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKIVS--QQS 125 Query: 126 QQPRNVQLNGPTT------DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 N L D++ ++PAMQ VF + +RS+ ++L+ GESG+GKE++A Sbjct: 126 LVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVLAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H SPRA PF+A++ AA+ + L+ESELFGHEKG+FTGA + R+G+FE A GGTLFLD Sbjct: 186 AVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GD+ +Q LLRVL + +F+RVGG P++VDVRIIAAT+++L + EGKFREDLF+ Sbjct: 246 EVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFREDLFY 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI + +PPLRERREDIP L +F++ + E+ + + P+ AL WPGNVR+ Sbjct: 306 RLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWPGNVRE 365 Query: 360 LENTCRWLTVMAAGQEVLIQDL--PGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 L N V+A G + + DL P L E+ S+ P + A+L Sbjct: 366 LRNVLERGAVVATGTVIQLSDLGLPTRL------EAASK--PGTLASL------------ 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+E+ + L H G+ ++AR+LG R TL K+++ G+ Sbjct: 406 ---------EEVEKRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGL 447 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 199/474 (41%), Positives = 278/474 (58%), Gaps = 29/474 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VVDD+ ++ LE L G + ++ + LA + DV L DI+MP + GL L Sbjct: 12 VLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLSGLEL 71 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L +K R P + VI+MT H+ ++ A++A + GA+DYL KPF E V LV RA++ E+ Sbjct: 72 LSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPF---EDVELVARAVAKAAER 128 Query: 126 QQ--PRNVQL--------NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + RN +L G ++G + +++V R+I ++ S+ +VL+ GESGTGKE Sbjct: 129 KMLFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKE 188 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA ALH SPR PF+ALN A+ + L+ESELFGH KGAFTGA ++G F+ ADGGT Sbjct: 189 LVARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGT 248 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGD+P Q RLLRVL +G+ RVG V+VDVR+IAATH++L + V+ GKFRE Sbjct: 249 IFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFRE 308 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNVI + LP LR+R +D+P LA HFL+ A LG + L P+ L WPG Sbjct: 309 DLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWPG 368 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFEST---VAESTSQMQPDSWATL-LAQWAD 411 NVR+LEN V+ G+ V DLP + T V E+ + W T+ A + Sbjct: 369 NVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAKE 428 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 ++LR E+ + T +RH + AAR G R+ R L++ Sbjct: 429 QSLR------------RFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRK 470 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 193/487 (39%), Positives = 274/487 (56%), Gaps = 24/487 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ +I L ++L AG +G L+ ++++ D +L D++MP MDGL Sbjct: 5 VLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDGLTA 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L ++ + P LPVI+M+ H +D AV A Q GA D+L KP + + + + H Sbjct: 65 LAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKHQAAM 124 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + + ++ D++G PAMQ +F +I R + S VLI GE+GTGKEL+A ALH+HS Sbjct: 125 AELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALHQHS 184 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PF+ LN AA+P +LIESELFGHEKGAFTGA ++R+G+FE A GTLFLDEIGDMP Sbjct: 185 KRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIGDMP 244 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 +Q +LLRVL +G+ RVGG KVDVR++AAT++NLE + G+FREDL++R+NV++ Sbjct: 245 QAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRINVVQ 304 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 +H PPLRERRED+P L + FL A + G L P+ A ++ +PGNVR+L N Sbjct: 305 IHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRNLVE 364 Query: 366 WLTVMAAGQEVLIQDL-----------PGELFES-------------TVAESTSQMQPDS 401 L ++ G V D P E+ V S++ + Sbjct: 365 RLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPAPAIA 424 Query: 402 WATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461 A R E + ER ++ L HT + EAARLL R + Sbjct: 425 APVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERGHFYK 484 Query: 462 KLKELGM 468 K+K LG+ Sbjct: 485 KMKALGL 491 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 186/468 (39%), Positives = 276/468 (58%), Gaps = 24/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +++D+ S+R L L AG T E G E ++ + + DV+++D+R+PG DGL + Sbjct: 4 ILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLEV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---SHY 122 LK +++ P V+++T ++D+ AV A + GAFDY+ KPF+ ++LVER + +H Sbjct: 64 LKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAHV 123 Query: 123 QEQQQPRN-VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ Q+ R V + +I+ +P+M VF +I +++ SV+I GESGTGKELVA+A+ Sbjct: 124 EDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANAV 183 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H SPR PFI +N AAIP++L+E+E+ G+EKGAFTGA ++G+ E ADGGT F DEI Sbjct: 184 HNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDEI 243 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM +Q +LLRVL F RVGG PV VD+R I AT + L +++GKFREDL++R+ Sbjct: 244 GDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRI 303 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + LPPLRER +DIP L F+ R+ G + + PE L +PGNVR+L+ Sbjct: 304 NVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVRELK 363 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 + + + + LPGE+ E + A L W G Sbjct: 364 HAVEMAVTFCSDRVITPSCLPGEIREGSPA--------------LQGW------RGDAGA 403 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L ++ E ER + L+ T G K AA+ LG R TL RKLKE ++ Sbjct: 404 LESSRKETERQTIINVLKKTGGRKMAAAKALGISRETLWRKLKEYNVD 451 >UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planctomycetaceae RepID=A6C862_9PLAN Length = 470 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 191/471 (40%), Positives = 283/471 (60%), Gaps = 13/471 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ SI W L + G + + L + PDV++ D+R+PG+DGL Sbjct: 4 LLIVDDEESICWGLSQLGESLGHQVRMASSAEQALTFAEEERPDVVVMDVRLPGIDGLTA 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++ + R +PVI++TA+ DL AV A ++GAFDY+ KPFD+++ ++E+AI Q Sbjct: 64 MQGLYDRIGTVPVIVITAYGDLQTAVEAVRKGAFDYIVKPFDLNQMERVLEKAIDESQ-- 121 Query: 126 QQPRNVQLNGPTTDI---IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 R+V + G + +G P MQ+VF+ I ++ S SVL++GESGTGKEL A A+H Sbjct: 122 ---RDVLMPGEPKQVEGLVGSTPEMQNVFKSIALVAGSEASVLLSGESGTGKELAAQAIH 178 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 R S R++ PF+A+N+A++ + L ESELFGH +GAFT A++ R G EQAD GTLFLDE+ Sbjct: 179 RFSDRSEGPFVAVNIASLSEGLAESELFGHAQGAFTSADSARVGFLEQADQGTLFLDEVA 238 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 D+PL +Q +LLR L +G+ VG VK R+IAATH+NLE +++GKFR DL+ RL Sbjct: 239 DIPLAIQIKLLRALEEGEVLPVGSNQRVKTSFRVIAATHRNLESLIKQGKFRHDLYFRLC 298 Query: 303 VIRVHLPPLRERREDIPRLARHFLQ-VAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 ++ +PPLR+R DI LA FL+ R+ G++ +L ET A L R W GNVR+L Sbjct: 299 TFQIDIPPLRKRVTDIRVLAEFFLERFVDRQTGMQHRLT-AETVAELERRPWYGNVRELR 357 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDS-WATLLAQWADRALRSGHQ- 419 N + A G +L +DLP + +S + + ++ + LL QWA+ L Q Sbjct: 358 NAIEHAALRARGGTILPEDLPAAVSQSFLGMGEAPAGSEAEISMLLKQWAEAQLTDPEQA 417 Query: 420 -NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 N+ + +E ++ AL G AAR LG R TL++KLK+ G+E Sbjct: 418 ANVYEQLLALIEPPVMEVALEKFHGQCAPAARCLGLHRTTLSKKLKQYGIE 468 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 279/473 (58%), Gaps = 15/473 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD + L R + + +G LEA+ + D++L D +MPG +GL Sbjct: 7 ILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKNGLET 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+I++ P+I+MTA+ +D A+ A + GA+DYL KPFD + + A+ + Sbjct: 67 LKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEVNRLM 126 Query: 126 QQPRNVQLNGPTT--------DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ + + T+ IIG MQ+V+++IG+++ ++VLI GESGTGKELV Sbjct: 127 KEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKELV 186 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A AL+ HS R PF+ +N AAIP+ L ESELFG+E+GAFTGA G+FE+ GGTLF Sbjct: 187 ARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCHGGTLF 246 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 DEI +MPL Q +LLR L G+ RVG P+KVDVR++ AT++NLE+ V++G+FREDL Sbjct: 247 FDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFREDL 306 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RL +I +HLPPLRER EDIP L +FL E + + A L AWPGNV Sbjct: 307 YWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHAWPGNV 366 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE-STSQMQPDSWATL---LAQWADRA 413 R+LENT R V+++G + + L F+S E S+ + + WA + L + Sbjct: 367 RELENTVRRAVVLSSGDVIREEHL---RFDSGGHEPSSPEWDKNPWARVERKLEELIPDL 423 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L+ G + + +ER LL+ L ++ +AAR+LG RNTL ++K+ Sbjct: 424 LQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKKF 476 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 192/461 (41%), Positives = 274/461 (59%), Gaps = 32/461 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD S +L+ L G G +G + L + K D++L D+RM MDG+A Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+IK +P +P++IMTA S ++ AV A + GA DYL KP D D +E+A++H +E Sbjct: 68 LKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKALAHTRET 127 Query: 126 --QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + P + +IG +PAMQ + I ++ S +VLI+G+SGTGKELVA ALH Sbjct: 128 GAELP---SASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 184 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S R+ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEIGD Sbjct: 185 CSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 + +Q RLLR + + + RVG + VDV +IAATH++L + V G+FR+DL++RLNV Sbjct: 245 ISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNV 304 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + + +P LR+RREDIP LA HFL+ A K P+ L WPGN+R+LEN Sbjct: 305 VAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTV-AESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V+ G+ + ++LP + + + AE+++++QP Sbjct: 365 IERAVVLLTGEYISERELPLAIAATPIKAENSAEIQP----------------------- 401 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 ++E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 402 ---LVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 >UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodopirellula baltica RepID=Q7UJV2_RHOBA Length = 470 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 196/474 (41%), Positives = 282/474 (59%), Gaps = 22/474 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ SI W LE+ L G T + E L A +++ D+R+P DG++ Sbjct: 7 ILVVDDEPSICWALEKMLTSEGHEVITGSSAEEGLRLAAQNDVSMVILDVRLPKEDGISA 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L + + P+II+TA DL+ AV+A + GA DYL KPF +++A+ A+ + Sbjct: 67 LPKFLEATDNAPIIIITAFGDLETAVAAVKNGATDYLTKPFKLEDALRTCRTALQKSAHR 126 Query: 126 QQPRNVQ-LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 P Q ++ + ++G +PAMQ VFR I ++ S +SVLI GE+GTGKELVA A+HRH Sbjct: 127 TAPAATQPMDIDPSVLVGTSPAMQQVFRQIALVADSDLSVLITGETGTGKELVAAAIHRH 186 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S RA P+I + A+ DLIESELFGH KGAFTGA+ R G FE+A+GGT+ LDEIGD+ Sbjct: 187 SRRADGPYIPIAPVALNPDLIESELFGHVKGAFTGASDDRAGLFERAEGGTVLLDEIGDL 246 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL Q +LLRVL GQ+ RVG P +VRI+AAT+ +L + V FREDLFHRL + Sbjct: 247 PLGTQVKLLRVLEQGQYCRVGDVKPRTANVRILAATNSDLHEDVATNAFREDLFHRLTGV 306 Query: 305 RVHLPPLRERREDIPRLARHFL---QVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 ++HLPPLR+R EDI L RHFL + A E V+ +LL L W GN+R+L+ Sbjct: 307 QIHLPPLRDRVEDIGPLCRHFLAAMKYADIESAVDDELLE-----QLHSRPWHGNIRELK 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG---- 417 N V++ G+++ I D P E A +TS + + + W++ A+ + Sbjct: 362 NAVGHAAVVSRGRKLTIDDFP-EPKPGRDAPTTSPVL--AMEKSIRVWSENAIEANPDSV 418 Query: 418 --HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 H + L+ +P TLL T ++HT G++ +AA +LG R TL ++K G++ Sbjct: 419 TLHSDYLAATEP----TLLRTVMKHTGGNRAKAAEMLGIHRGTLRDRMKAYGID 468 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 337 bits (865), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 184/475 (38%), Positives = 288/475 (60%), Gaps = 20/475 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 +GI+ +VDD+ +IR + L G + E LE + + PD++L D+R+P ++G Sbjct: 4 KGIILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNING 63 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L+++IK++ P +++MT + +D+AV + GA+DYL KPF +D ++VE+A+ Sbjct: 64 VELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKALRRQ 123 Query: 123 QEQQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSS-ISVLINGESGTGKE 175 +Q+ ++ T D IIG +P M++++ +I ++++SS +VLI GESGTGKE Sbjct: 124 GLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKE 183 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQADGG 234 LVA A+HR S R F+ +N AA+ + L+E+ELFG+EKGAFTGA T + G FE AD G Sbjct: 184 LVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKG 243 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 T+FLDEIG+M + +Q +LLR+L + QF RVGG +K+DVRIIA+T++NLE+ + G FR Sbjct: 244 TVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFR 303 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 +DL++RL V+ +++PPLRERREDI L ++F+ E G + P+TE L WP Sbjct: 304 KDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYGWP 363 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE-STSQMQPDSWATLLAQWADRA 413 GN+R+L+N ++A G L VA S + + +S A + Sbjct: 364 GNIRELKNVVERGVLIANGS---------ALSPKYVANISVGKKESESLAGITVDGNTDC 414 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + S L + + +E+ + L+ T + EAAR+LG R TL K+KE G+ Sbjct: 415 VSS--DGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 337 bits (863), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 187/470 (39%), Positives = 276/470 (58%), Gaps = 20/470 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+S +R L L + T E+G + L + D++++D++MP + G+ + Sbjct: 4 ILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGIDI 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH---Y 122 L++ K+ P V+++TA ++ AV A + GAF+YL KPF D A++E+A H Sbjct: 64 LRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSLV 123 Query: 123 QEQQQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 QE Q R G + + IIGE+P M+ + R + R+++S+ SV INGESGTGKE++A Sbjct: 124 QENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQ 183 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R++ PFI +N AAIP+ LIESE FGHEKGAFTGAN R GRFE A GTL LD Sbjct: 184 AIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLD 243 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI ++PL VQ +LLR + + +F RVGG P+KVDVR+I+ ++++++ + REDL++ Sbjct: 244 EITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYY 303 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ ++LPPLR+R EDI LA +FL+ E +AK E+ L AWPGNVR+ Sbjct: 304 RLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVRE 363 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N VM E+ P L+ E+ P A+ L+Q +L G Sbjct: 364 LANIVERAVVMTTNSEI----TPEHLY----IENNHPNLPLRTASTLSQNTLTSLPVGM- 414 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ELE+ L+ L+ ++ + A +LG TL KL E M+ Sbjct: 415 -----TLQELEKRLIIETLQAQHNNRTKTAEVLGISVRTLRNKLNEYNMK 459 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 189/468 (40%), Positives = 280/468 (59%), Gaps = 32/468 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD R +L+ L G T +G EVL L D++L D++MP +DGLA Sbjct: 4 ILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLAT 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L + Q++ +PVI++TA S ++ A+ A ++GAFDY+ KP DID + +A+ +Q+ Sbjct: 64 LSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKAL--HQKI 121 Query: 126 QQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 P + Q + +IIGE+ MQ++F I ++ S ++L++GESGTGKELVA A+ Sbjct: 122 SPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAI 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HRHS R + I +N AA+ ++L+ESELFGHE GAFTGA ++G FE+AD GTLFLDEI Sbjct: 182 HRHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L Q ++LRVL +G+F RVGG +KV+VRIIAA+H+NLE+ ++EG FR+DLF RL Sbjct: 242 GDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRL 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +V+ +HLP LRER DIP LA FL + ++ + K E L WPGN+R+LE Sbjct: 302 SVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELE 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N+ ++ G+++ +LP + F + S + S TL Sbjct: 362 NSIERGVILCLGEQITAHELPPQFF-----RNRSPGELSSRDTL---------------- 400 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++E+ + AL + +K A+ LG R TL K+++ G+E Sbjct: 401 -----RDVEKRAIQQALARSGFNKSATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 191/469 (40%), Positives = 284/469 (60%), Gaps = 22/469 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ IRW + L G + E+G + LE +A+ PDV+L D+R+PG+DG+ Sbjct: 8 ILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLPGIDGVQT 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++ HP + V++M+AHS +D AV A + GA D+L KPF + VERA+++ + + Sbjct: 68 LQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERALANVRTR 127 Query: 126 QQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKELVAHA 180 +Q + + ++G + AM+ V +I RL+ S + +VLI GESG+GKE+VA A Sbjct: 128 RQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSGKEVVARA 187 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S RA P + +N AA+P+ L+ESELFGHE+GAFT A+ ++G FE A+GG++ LDE Sbjct: 188 IHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEGGSVMLDE 247 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGD+P Q +LLR+L + F RVGG ++ DVR+IAAT+ NLE+RV EG+FR DLF R Sbjct: 248 IGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRFRADLFFR 307 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+R+ +PPLRE +D+P L HF+ +E+ + K + P L WPGNVR+L Sbjct: 308 LNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHWPGNVREL 367 Query: 361 ENTC-RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 N R + A E+ + LP EL + A + +P+ L+ Q L Sbjct: 368 RNVIERAFILHAGADEIRPEHLPPELRK---AAAPGGKRPEK---LVPQVTGEGL----- 416 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ER L+ A+ G++ +AARLLG R+TL +LK+ GM Sbjct: 417 -----VLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 195/466 (41%), Positives = 272/466 (58%), Gaps = 29/466 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ + R + L G NGAE L + +P V+L+D+RMP MDGL L Sbjct: 6 ILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQMDGLTL 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---SHY 122 LK +++ ++MTA + ++ AV A + GA ++L KP D D+ + + + + S Sbjct: 66 LKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLEKRSLR 125 Query: 123 QEQQQPRNVQLNGPTT---DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 QE + R+ Q+ DIIGE+P +Q ++ +I R + + +VLI GESGTGKEL+A Sbjct: 126 QEAEALRD-QVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQ 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH+ SPR PFI ++ AA+ ++L+ESELFGHEKG+FTGA ++GRFE ADGGTLFLD Sbjct: 185 ALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ VQ +LLRVL +F RVGG +KVDVRI+AATH++L V+ G+FREDL++ Sbjct: 245 EIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYY 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ V LPPLR+R+ D+P L HFL+ + G + + L P T AL WPGN+R+ Sbjct: 305 RLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWPGNIRE 364 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN V+A GQE+ DLP + TS ATL A Sbjct: 365 LENAIERAVVLAQGQELSTDDLP-PVLRGPRPHGTSTGALIPGATLAA------------ 411 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 +ER + L QG AA +LG + +LKE Sbjct: 412 ---------IEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLKE 448 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 189/463 (40%), Positives = 269/463 (58%), Gaps = 20/463 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPGMDGLA 64 + + DDD IR +L G E+G EVL + K P D+L+ D+RMPG DGL Sbjct: 10 ILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQDGLT 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L+Q+++ PVI+MTAH A+ A Q GA+DY+ KPFD++E +V+R H Q Sbjct: 70 ILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQL 129 Query: 125 QQQPRNVQLNG--PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + R ++ P +IG +PAMQ++++ IGR++ + +VLI GE+GTGKE++A+ +H Sbjct: 130 ASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIH 189 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 +S R P + +N AA+P+ L+ESELFGHEKGAFTGA R+GRFE A G++FLDEIG Sbjct: 190 VNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIG 249 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +M L Q +LLR+L + +F RVGG V+VDVR+IAAT+++LE V+ G FREDL++RLN Sbjct: 250 EMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLN 309 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 VI +HLP LR+R DIP LA FL + E L WPGNVRQLE+ Sbjct: 310 VITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLEH 369 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 +++ G + + + S V S S +Q D A R ++ L Sbjct: 370 EIERAVILSRGNVITSEHM------SLVPSSRSALQ-----------VDIAARLREKSTL 412 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E ++ER L AL + AAR LG ++ K+ Sbjct: 413 EELLADVERLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKK 455 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 189/464 (40%), Positives = 281/464 (60%), Gaps = 20/464 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ + R VL + L G T +N L+ L+ + D+++SD++MP M G+ Sbjct: 4 ILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGIDF 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ + +P I++TA++ + A+ A + GAFDYL KPFD +E + V++A+ + + Q Sbjct: 64 LRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYSKLQ 123 Query: 126 QQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R ++ N T ++G +PAM+ + I +++ + S+LI GESGTGKELVA AL Sbjct: 124 NENWLLRRELEQNRDRT-LVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQAL 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR SPR+ +++N AA ++L+ESELFGHE+GAFTGA ++G E +DGGTLFLDEI Sbjct: 183 HRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+ PL++Q +LLRVL + F RVGG A + D+RIIAATH+NLEQ + EG FREDL++RL Sbjct: 243 GEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ +HLPPLR RREDIP L++ FL+ +R++G L + + L WPGNVR+L+ Sbjct: 303 NVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRELQ 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + G + LP + F S ++ A L Q Sbjct: 363 NILERGLLFCDGPTLEQNHLPQQ-FHSQAPHHNG----------CSETAAMPL----QQP 407 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 L E +E+ L+ AL +G + +AA LLG R+ L KLK+ Sbjct: 408 LPEHLETIEQKLIQAALIDARGVQAKAAELLGISRSNLQYKLKK 451 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 186/474 (39%), Positives = 288/474 (60%), Gaps = 39/474 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VV+D+ +R V+E L AG + E L+ + D++L+D+++P MDG Sbjct: 5 ILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIV--DRADMVLTDLKLPNMDGQEF 62 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L I++++ +PV++MTA +++ AV A + GA D+L KPF +D + +V++A+ + Sbjct: 63 LSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVRALR 122 Query: 126 QQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ R ++ +I+G +PAMQ++F I R+ S +VL+ GESG GK+L+A A+ Sbjct: 123 EENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIARAI 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H HSPR P + +N AIP++L+ESELFG+EKGAFTGA T + G+FEQAD GT+FLDEI Sbjct: 183 HFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD+P +Q +LLRVL + +F R+G +DVR++AAT+Q+L +++G FREDL++RL Sbjct: 243 GDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA---WPGNVR 358 NV+ +++PPLRER+ DIP LA HF+ A + G + + + T+A + +L WPGNVR Sbjct: 303 NVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESI---TDAGMEKLMAYHWPGNVR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN VMA G ++ D+ E A R G+ Sbjct: 360 ELENVIERSLVMATGTQLDADDIKLE------------------------SAPRPRAQGN 395 Query: 419 QN-LLSE--AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 N L E + + E+ ++ ALR G+K +AARLLG RN L +L ++G+E Sbjct: 396 DNHFLPEGLSLDQYEQEIIREALRRADGNKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 334 bits (856), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 188/464 (40%), Positives = 279/464 (60%), Gaps = 19/464 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ SI L L G +G E LE L TPD++L DI MPGMDGLA+ Sbjct: 5 ILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDGLAV 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS-HYQE 124 L++IK+ H LPVII++ H +++ AV A + GAFD++ KP ++ + ++ A+ H E Sbjct: 65 LEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFHRLE 124 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 ++ Q T+ + G + A++ + I R + ++ +VLI GE+GTGKEL A +H+ Sbjct: 125 EENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMIHQL 184 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S R+ P + +N AAIP+DLIESELFGHEKGAFTGA+ R+GRF+ A+GGTLFLDEIGDM Sbjct: 185 SKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEIGDM 244 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 L Q ++LR+L + F RVGG ++VDVR++AAT++++++ ++ G+FR+DL++RLNVI Sbjct: 245 SLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRLNVI 304 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +PPLR+R +DIP L FL A E + K + P L + +WPGN+R+L N Sbjct: 305 PIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELRNFI 364 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 + +M GQ + +DLP + F + + + + P AT L E Sbjct: 365 ERMVIMTPGQRIGPRDLPLD-FLNRLPKPPEEAGPYQCAT-----------------LRE 406 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A+ ER L L + A +G R+ L RK+K LG+ Sbjct: 407 ARSVFERAYLLRKLDEFAWNVSLTAAQVGLERSHLHRKMKALGI 450 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 333 bits (854), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 193/465 (41%), Positives = 279/465 (60%), Gaps = 17/465 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ +IR L L G E+ + LE L S+ D+ + DIR+PGMDGL L Sbjct: 30 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLTL 89 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH--YQ 123 L + ++ LPVI+++ H+D V A ++GA D+ KP D D + V A+S + Sbjct: 90 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRDLE 149 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + Q + + + D++GE+PAM+ + IG+++ +S VL+ GESGTGKELVA +HR Sbjct: 150 GKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAAEVHR 209 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S RA PF+ +N AAIP +LIESELFGHEKG+F+GA R+G+FE A GGTLFLDEIGD Sbjct: 210 QSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTLFLDEIGD 269 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 M L Q ++LR L G+ RVG VDVRIIAAT+++LE+ V+ G FREDLF RLNV Sbjct: 270 MGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFREDLFFRLNV 329 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + + +PPLR+R +D+P LA F Q+A RE G+ K + P L + WPGNVR+L N Sbjct: 330 VPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGNVRELRNV 389 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 C + +M +G+ + D+P TV + P A L+++ + L+ Sbjct: 390 CERMVIM-SGERITAADVP-----ETVGPRAAPPPPPGSAD-LSRYGEVPLK-------- 434 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E + +ER + + L + +AA+ LG R L +K+K+ G+ Sbjct: 435 ELRDLVERDYILSRLEEHDWNITQAAQALGVERTNLHKKIKQHGL 479 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 333 bits (854), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 279/470 (59%), Gaps = 25/470 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R V VVDD + +L+ L G GA+ + L ++ D +L D+RM +DG Sbjct: 4 RARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQDVDG 63 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L ++ P LPV++MTA +++AV A ++GAF Y KPF +DE +ERA+ Sbjct: 64 FDVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERALEQR 123 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + R ++ G ++G + AM+D++ +I R++ S VL+ GESG+GKELVA Sbjct: 124 RLRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGKELVA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH R PF+A+N A+P L+ESELFGH KGAFTGA T R+G F +ADGGTLFL Sbjct: 184 RALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGGTLFL 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM ++Q RLLRVL DG+ VG VDVR++AATHQ+LE RV+EG+FR D+F Sbjct: 244 DEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFRADVF 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVA-ARELGVEAKLLHPETEAALTRLAWPGNV 357 +RLNV+ + LPPLRERREDIP L HFLQ A AR + PET AAL L W GNV Sbjct: 304 YRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPWAGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN + L V+ + + V DLP +L ++++ + P L + Sbjct: 364 RELENLVQRLVVLGSTEVV---DLP-QLRPHLPSDTSQENHP--------------LAAA 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + ++ Q LE + A+ G+K +AA LLG +T+ R+ + G Sbjct: 406 QRTIVPLRQ--LETEYIAWAVARCGGNKTKAAELLGIDVSTIHRRERAEG 453 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 189/469 (40%), Positives = 286/469 (60%), Gaps = 27/469 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + VV+DD + L + L G T +G + L L+ ++ D++++D+++PGM Sbjct: 1 MTKPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL+LL++IK+++ + ++++TA+S + +AV+A + GA +YL KP D++E ++E+ Sbjct: 61 GGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLRE 120 Query: 121 HYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q Q R ++ ++++G +P M +F++I ++ S+ SVLI GE+GTGKEL Sbjct: 121 KQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VAHA+H S RA PF+AL+ AA+ + ++ESELFGHEKGAFTGA R+GRFE ADGGTL Sbjct: 181 VAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE+ +M L VQ +LLRVL G+F RVGG +KVDVR IAAT++NLE+ V EG+FRED Sbjct: 241 FLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNVI + +PPLRER++DIP L+ +F A++ E K PE AL W GN Sbjct: 301 LFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+L+NT V+ + + LP S M + + ++ L+ Sbjct: 361 IRELQNTIERAIVLCKSDTISVDHLP-----------ESIMPDNEYIPVIKIPIGTTLK- 408 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E E+ ++ L+ T G KQ AA++LG + K KE Sbjct: 409 -----------EAEKEIIQRTLQITNGSKQSAAKILGISTRKIEYKTKE 446 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 274/464 (59%), Gaps = 27/464 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD I +++ L G T T + E L + + D++L D MP + GL Sbjct: 5 ILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLEF 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 + ++K+R PVI+MTA+ L+ AV A ++GAF Y+ KP + +E ++++A+ + Sbjct: 65 IDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQAL-EVSDL 123 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 ++ N + +TDII E+P M+ V +++ +VLI GESGTGKE++A+ +H++S Sbjct: 124 KKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNS 183 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R + PFIA+N AIP +L+ESELFG++KGAFTGANT ++G E+A+GGTLFLDEIG++P Sbjct: 184 LRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELP 243 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 LD+Q +LLRVL + + +G P K+DVR IAAT+++L++ V+EGKFREDL++R+NVI Sbjct: 244 LDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIP 303 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 +H+PPLRER+EDI LA++F+ G+ K L + L + GNVR+LEN Sbjct: 304 IHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENIIE 363 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + G+E I D+P + R + S EA Sbjct: 364 RAVLTTEGEE--ITDIP------------------------VTVSKRYILSQELKPFKEA 397 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E E + L L T + +A+++ G R + R +K G+E Sbjct: 398 KKEFEESYLKNLLEKTDFNISKASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 332 bits (852), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 193/471 (40%), Positives = 283/471 (60%), Gaps = 35/471 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V+DD S R +++R LA + F + A+ + A+ D +++D+RMPG+DG+ Sbjct: 9 LMVIDDLDSARQMMKRTLARS-YDVYDFASVADAVPAVERADFDCIVTDLRMPGIDGIEG 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++ + + P +PVI++TA + ++ AV A + GAFDYL KPF+ +E +V RA+ H + + Sbjct: 68 LRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAVEHARVK 127 Query: 126 QQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 ++ N +L I+G++ AM+D+ ++ R++ S + +LI GESGTGK+L+A Sbjct: 128 KE--NARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKDLLAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A H S RA+ P++ALNM+AIP++L ESELFGHEKGAFTGA+ R G F +A+GGTLFLD Sbjct: 186 AAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+G +P +Q +LLRVL DG+F VG P K +VR++AAT+++L++RV+EGKFREDL+ Sbjct: 246 ELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFREDLWF 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA--ALTRLAWPGNV 357 RL V+ + LPPLRERREDIP L H +Q A L + L P+ EA AL WPGN+ Sbjct: 306 RLRVVPLRLPPLRERREDIPLLVEHLVQKHA--LRLSRPPLQPDAEAMRALLDHPWPGNI 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LE+ ++A G + + DLP EL + AE+ + W Sbjct: 364 RELEHAIERGLLLARGDAITLADLPPEL--TPPAEAAGGADEGRYRRARDAW-------- 413 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ER L LR G AA L G R+T KL G+ Sbjct: 414 ------------ERRFLEDVLREAGGQVARAAELSGLHRSTFYEKLARHGL 452 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 332 bits (852), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 180/473 (38%), Positives = 286/473 (60%), Gaps = 24/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+ I+ +VDD+ SI L L G T ++G E + L P ++L DI +PG+ Sbjct: 1 MQKSIL-IVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGI 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI- 119 DG+ +LK IK HP LPV++M+ H ++ AV A + GAFD++ KP +++ + ++ A+ Sbjct: 60 DGMEVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALD 119 Query: 120 -SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 S +E+ ++N ++ G++P + ++ +I ++ ++ +LI GE+GTGKELVA Sbjct: 120 LSRLEEENVLLKQKINR-DYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVA 178 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+HR S RA P + +N AAIP++LIESELFGHEKGAFTGA ++G+F+ A GT+FL Sbjct: 179 RAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFL 238 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ DM L Q ++LR+L + +F RVGG +++DVR++AAT+++LE+ ++EG+FR+DLF Sbjct: 239 DEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLF 298 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +PPLR R+EDIP LA FL A + G K + + A L +WPGNVR Sbjct: 299 YRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVR 358 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP--DSWATLLAQWADRALRS 416 +L+N L +M + + D+P + +++P + LLA Sbjct: 359 ELKNFIERLAIMTTSNVITVHDIP------PLPRDGHKVEPFREPGFELLA--------- 403 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 EA+ + E+ ++ LR G+ + A +G R+ L +K+K G+E Sbjct: 404 ---GSFREAKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKIKAYGLE 453 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 332 bits (852), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 188/468 (40%), Positives = 276/468 (58%), Gaps = 19/468 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPGMDGLA 64 + V++D+++ R + L AG TT E G + LE L SKTP +V+L+D+ +PG+ G+ Sbjct: 18 ILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEIL-SKTPFEVILTDLFLPGVSGIE 76 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--SHY 122 +LK++K++ P VI++T ++AV A ++GAFDY+ KP ++ ++ +A+ S Sbjct: 77 ILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSRL 136 Query: 123 QEQQQPRNVQLNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + QL G +IIG + MQ VF + ++ + ++LI GESGTGKELVA A Sbjct: 137 VAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKA 196 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H + R + PF+A+N AIP +L+ESELFGH +GAFTGA + G+F+QA GT+FLDE Sbjct: 197 IHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDE 256 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG MPL +Q +LLRVL + + +VG +K+DVR+I+AT+ NLE+ V++G+FR DL++R Sbjct: 257 IGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYR 316 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI + LPPLRERREDI LAR+FLQ E+ + P L WPGNVR+L Sbjct: 317 LNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVREL 376 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + + DLP + S + Q+ R SG Sbjct: 377 ENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQIS-----------CPRLTESGMD- 424 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E +ER L+ +A+ + G K AA LL R TL K+K LG+ Sbjct: 425 -MPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 192/464 (41%), Positives = 263/464 (56%), Gaps = 22/464 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+++ L RA AG T +N LE SK D++LSD+ MPG DGL L Sbjct: 7 ILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMPGRDGLTL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ +K PV++M+ + ++ AV A + GA D+L KP D+ + VE A+ + + Sbjct: 67 LEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENALKLKRLE 126 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + R+++ +I+ + AM+ V I R++ S V I GE+GTGKEL A LH S Sbjct: 127 TENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTLHEKS 186 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 PR PFI LN AA+P +LIESELFGHEKG+FTGA G+FEQA GTLFLDEIGDMP Sbjct: 187 PRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFLDEIGDMP 246 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LLRVL +G+ RVGG + VDVR+I ATH+NLE V+EGKFR+DLFHR+ V Sbjct: 247 LAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLFHRVYVFP 306 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + LPPLR RREDIP L HF + G + E AL R +WPGNVR++ N Sbjct: 307 LILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVREMRNVVE 366 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 L ++A EV + L E+ A S + P LS Sbjct: 367 RLLLLAVAGEVDRATVELALPEAQTATSDTGSGP----------------------LSSR 404 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ER ++ L+ + H A+ LG R+ L +K + LG++ Sbjct: 405 VAQYEREVILAELQRQKHHITNTAKALGLERSHLYKKCQALGID 448 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 192/469 (40%), Positives = 279/469 (59%), Gaps = 23/469 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA-SKTPDVLLSDIRMPGMDGLA 64 +++ DD+ I +++ L GL TF +G +L L D+LL D++MP MDGL Sbjct: 11 IFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPDMDGLQ 70 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH--- 121 +L+++K+ P LPV+IMTA +DAAV A + GA+DY+ KPF ++ + ++E + Sbjct: 71 ILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLENVLERELL 130 Query: 122 YQEQQQPRNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +E QQ + TD I+ + ++V+ + ++ S ++LI GESGTGKEL+A A Sbjct: 131 RKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTGKELIAGA 190 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +HRHS R +++N AA+ L+ES+LFGH +GAFTGA T ++G E+AD GTLF+DE Sbjct: 191 IHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADSGTLFMDE 250 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM L +Q +LLRV+ +G F VG KVD+R +AAT++NLE+ V EG+FREDL++R Sbjct: 251 IGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRFREDLYYR 310 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI + LPPLRER+EDI LARHFL+ + + E E + +WPGN+R+L Sbjct: 311 LNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSWPGNIREL 370 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN ++A V LP +++ VA ST+ P S AL S HQ Sbjct: 371 ENVVERAVILARSGVVTTDHLP--MWKKNVA-STAATGPAS-----------AL-SSHQL 415 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E +ER + L T HK A +LG R TL RK+ E G++ Sbjct: 416 VSLE---NVEREHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGLK 461 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 332 bits (850), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 183/471 (38%), Positives = 279/471 (59%), Gaps = 21/471 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + ++DD+ + VL+ L G T T + L L DV+++D++MP + Sbjct: 3 EKAHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMPKVT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G +L+++K+ P +PV+IMTA +++AV + GAFDY+ KPF DE + + A+ Sbjct: 63 GRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNAVEL 122 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +Q R +Q I+G + A++DV ++ R + S +VLI GESGTGKEL+ Sbjct: 123 ARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H SPR PF+++N A+ ++ESELFGHEKG+FTGA +R+GRFEQADGGTLF Sbjct: 183 ARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI ++ D+Q +LLRVL + +F RVGG ++VD+R++AAT+++L V++G FR+DL Sbjct: 243 LDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+++ LPPLRERREDIP L HF+ + + AK E LT WPGN+ Sbjct: 303 YYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNI 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLEN V+ G + + +LP E + + SQ + S LL D Sbjct: 363 RQLENVVESCLVLVPGTVINVDNLPAE-----IRDEESQFK--SAVDLLPVQLD------ 409 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L++ ++E L+ AL + +AA LG ++ L KLK+ + Sbjct: 410 ----LADTLEKIEAALIRRALVRADLVQVKAAEYLGISKSLLQYKLKKYAI 456 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 182/459 (39%), Positives = 278/459 (60%), Gaps = 14/459 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ + + +R L + + ++G E L+ L ++ DV++ DIRM GL Sbjct: 23 ILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLET 82 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI------ 119 LK+I++ P V+IMTA+ A+ A + GA+DY+ KPF++ E +++ +A+ Sbjct: 83 LKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASKLT 142 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q P N + + IIG++ MQ V+++IG+++ ++ +VLI GESG+GKELVA Sbjct: 143 KEVSSQAFPANA-FDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVAR 201 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A++++S RA PFIA+N AAIP++L+ESELFGHE+G+FTGA R G+FEQ DGGT+FLD Sbjct: 202 AIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLD 261 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MP+ Q ++LRVL +G+F R+G P+K DVRIIAAT+++L V + +FR DLF+ Sbjct: 262 EIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFY 321 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+++ LPPLRER EDIP L HFL R L + + +L WPGN+R+ Sbjct: 322 RLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIRE 381 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN + V+A + LP E+ AE + S A D ++ Sbjct: 382 LENVIQRAMVLATSATIQNCHLPEEI---QAAEKKKYFKEKSGKGGPAGGLDFLVQEIVG 438 Query: 420 NLLSEAQPELERTLL----TTALRHTQGHKQEAARLLGW 454 + L + + E ++LL T L +G + +A R+LG+ Sbjct: 439 SDLRDHRLETLKSLLHRIYTQVLEECEGDESKAKRILGF 477 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 179/463 (38%), Positives = 273/463 (58%), Gaps = 27/463 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +DD+ S + L G T T E +E L + T + +L D R+PGMDG+ L Sbjct: 4 ILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDGIDL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ +K +P +++TA+ ++ AV A + GA+ YL KP D + + +++ AI + Sbjct: 64 LRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSKGI 123 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 Q+ ++ P +IIG++ +Q++F I+ ++ S+ +VLI GESGTGKELVA A+H++S Sbjct: 124 QKLEKIE--TPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNS 181 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PFI ++ IP++L+ESELFGHEKGAFTGA + G E A+ GT+FLDEIG++P Sbjct: 182 LRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELP 241 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 + +Q +LLR L + + R+G +KVDVR+I+AT+++LE+ ++EG FREDL+ RLNV+R Sbjct: 242 MLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVR 301 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 ++LPPLRER+EDIP L HFL ++E L PE AL WPGN+R+L N Sbjct: 302 INLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIE 361 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 V++ + I+ LP + E+T W ++ NLL Sbjct: 362 RAVVLSPSGLISIKHLPRRIQENT-----------GWTI---------IKENTFNLL--- 398 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+E+ L+ AL T ++ +AA +LG R L K+K G Sbjct: 399 --EVEKALILKALNSTGWNQTKAAEILGISRKQLRTKMKHHGF 439 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 189/451 (41%), Positives = 262/451 (58%), Gaps = 32/451 (7%) Query: 27 GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSD 86 G ++ E L A T DV++ DI+MP + G+ LL+ IK P + VI+MTA + Sbjct: 30 GHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDVEVIMMTAFAT 89 Query: 87 LDAAVSAYQQGAFDYLPKPF-DIDEAVALVERAISHYQEQQQPRNVQ----LNGPTTDII 141 ++ AV A + GA+DYL KPF +IDE V +A + + R ++ + D+I Sbjct: 90 VETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEALTVRSQFEDLI 149 Query: 142 GEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP 201 G++ M+ VF+++ +S S+ +VLI GESGTGKELVA A+H S R PF+A+N +A+ Sbjct: 150 GQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSALT 209 Query: 202 KDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQF 261 + L+ESELFGH KG+FTGA ++G FE ADGGT+FLDEIGD+P Q RLLRVL +G+ Sbjct: 210 ETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRVLQEGEV 269 Query: 262 YRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRL 321 RVG PVKVDVR+IAATH +L + ++GKFREDLF+RLNVI + LPPLR+R ED+P L Sbjct: 270 KRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRPEDVPLL 329 Query: 322 ARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDL 381 A HFL++ A + + + P ALT W GNVR+LEN V+ + + ++DL Sbjct: 330 AHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLTGNEVIDVEDL 389 Query: 382 PGELFESTVAESTSQMQPDSWATLL-------AQWADRALRSGHQNLLSEAQPELERTLL 434 P S QPDS + AQ A+R+ ER L Sbjct: 390 PPGF--------QSAPQPDSTVEVFSLAHLPYAQAKRLAMRA------------FERRYL 429 Query: 435 TTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + L + AAR G R+ R LK+ Sbjct: 430 SALLEKNNQNVSSAARAAGVDRSNFRRLLKQ 460 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 184/463 (39%), Positives = 274/463 (59%), Gaps = 24/463 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V+DDD +R +L LA AG T +G E + L S++ +V+L+D++MP G+ + Sbjct: 8 ILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMPHFSGIEI 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+Q +P V+++T H +++AV A ++GA+DY+ KPF+ DE + V+RA H + + Sbjct: 68 LEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRATEHARLR 127 Query: 126 QQPRNVQ--LNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 Q+ R +Q + G D ++GE+P ++ + +I +++ S +VLINGE+GTGKEL A +H Sbjct: 128 QENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKELAAKLIH 187 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 + S R K PF+A+N A+P+ L+ESELFGH KGAFTGA+ + G FE D GTLFLDEI Sbjct: 188 KWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGTLFLDEID 247 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 M L+ Q +LLRVL +G F +VGG P + DVR+IAA+ + L + V G FR DLF+RLN Sbjct: 248 SMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRRDLFYRLN 307 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ + LPPLR+RREDIP LA HFL + + + + L +WPGNVR+LEN Sbjct: 308 VVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPGNVRELEN 367 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + GQE+ + LP E+ E+ D +L Sbjct: 368 AVERALLFCPGQELQAEHLPP--LETGGEEAELHTTADDAKSL----------------- 408 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 +E+ L+ AL+ GH+ + A LLG +L RK+K+ Sbjct: 409 --TMASMEKKLIIKALQRANGHRGKTAELLGISPASLWRKIKK 449 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 190/466 (40%), Positives = 276/466 (59%), Gaps = 20/466 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ +R G + T EN + + L S + DV+L D+R+PG+ GL Sbjct: 15 LLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGLEA 74 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+QIKQR P VI++T ++ + +AV A + GAFDY+ KPF++DE L++R H + Sbjct: 75 LRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLKLT 134 Query: 126 QQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R V+ ++G AP M+ ++RII + + S+ VLI GESGTGKE+VA A+ Sbjct: 135 TENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARAV 194 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H PFI ++ ++ LIESELFG+ KGAFTGA +QG ADGGT+FLDEI Sbjct: 195 HYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDEI 254 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P+D+Q++LLR L + + VGG V ++VRI+AAT+++LEQ VQ+G FR DL+ RL Sbjct: 255 GELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFRL 314 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLR+R++DIP L HFL+ R G + + + LT WPGNVR+LE Sbjct: 315 NVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQRNISDEALKLMLT-YDWPGNVRELE 373 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 + + +G + DLP +T+ Q Q T+LA A A +G + Sbjct: 374 HCLDRACALTSGPTINTLDLP-----TTIQNWHVQTQ-----TVLAPQAPAAPTNGIVPI 423 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+E+ + A+ G K EAARLLG G+ TL RKLKE G Sbjct: 424 -----AEMEKQAILEAIERLHGDKLEAARLLGIGKTTLYRKLKEYG 464 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 196/480 (40%), Positives = 284/480 (59%), Gaps = 20/480 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD++ R L AL G T NGAE LE LA D++L+D+ M GMDGL L Sbjct: 39 ILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGLDL 98 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ ++ RHP V+++T + + AV A GA+ YLPKP+D++EA ALV++A+ + + Sbjct: 99 LRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKRRLR 158 Query: 126 Q-------QPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q Q R L P ++G AP MQ + R I +++ S ++VLI GE+GTGKEL A Sbjct: 159 QEVARLREQLRERSLPVP---LLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAA 215 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H S R++A F+A+N A ++L+ESELFGHE+GAF+GA R+G FE A+GGTLFL Sbjct: 216 RMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFL 275 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+G+M L +Q +LLR + + RVGG A + VDVR++AAT+++L G+FR DL+ Sbjct: 276 DEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLY 335 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + +PPL ER ED+P LA++F + AAR+ G A + PET L R +PGNVR Sbjct: 336 YRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVR 395 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGEL---FESTVAESTSQMQPDSWATLLAQWADRALR 415 +L N V+ AG + DLP +L + + + L AD A R Sbjct: 396 ELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADEAAR 455 Query: 416 ---SGHQNLLSEAQP----ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + + +P E ER + L G++ AA++L R +L RKLK G+ Sbjct: 456 MPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 330 bits (846), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 186/467 (39%), Positives = 274/467 (58%), Gaps = 27/467 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 ++ +VDDD +R ++ LA G+ +GAE E + +T D++++D+ MP +DG+ Sbjct: 5 LILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGME 64 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL Q +P V+++T + +++AV A + GA+DYL KPF+ D+ + +V+RA+ + Sbjct: 65 LLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALVRLRL 124 Query: 125 QQQPRNV--QLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q + R + Q+ G D ++G + M + +I R++ +VLI GE+GTGKEL A + Sbjct: 125 QDENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARMI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR S R F+ +N A+P+ L+ESELFGH +GAFTGA+ ++G E AD GTLFLDEI Sbjct: 185 HRLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLFLDEI 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 Q +LLRVL +G F RVG + P VD+R+IAA++ LE+ VQ G+FR DLF+RL Sbjct: 245 NTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + LPPLRER DI LA +FL AR+ GV+ + PE +L WPGNVR+LE Sbjct: 305 NVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVRELE 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N +MA G E+ Q LP T S+S Q L Sbjct: 365 NIIERAVIMADGNELQPQYLPRFSVSDTPLSSSSD----------------------QEL 402 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L A E+ER + L+ T GH+ +A++LLG +L RK+K+ G+ Sbjct: 403 LPMA--EVERRHIIRVLKATAGHRGKASKLLGISLASLWRKVKQYGL 447 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 330 bits (846), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 191/469 (40%), Positives = 281/469 (59%), Gaps = 24/469 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VV+D S R +L L G T +G E ++++A D++L D +MPGMDG+ + Sbjct: 6 ILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMDGMQV 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVA----LVERAISH 121 L+++K+ +P V+I+TA+ ++ AV A + GA DY+ KP + DE + + ER Sbjct: 66 LQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAERRTLI 125 Query: 122 YQEQQQPRNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + R ++ G TTD II + M + + R++ S +VL+ GESGTGKEL+A Sbjct: 126 RENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELLARL 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H+ SPR+ P I +N A+P+ LIESELFGHEKGAFTGA + R GRFE+ADGGTLFLDE Sbjct: 186 IHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ + VQ +LLR L + +F RVGG ++ DVRII+AT+++LE V+E KFREDL++R Sbjct: 246 IGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + +PPLRERREDIP L HFL+ A E G + + E L + +PGNVR+L Sbjct: 306 LNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPGNVREL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN V+A + + ++DLP F +TS P+ + LR +N Sbjct: 366 ENIIERAVVIARNEIIYMEDLP---FREDTLVATSGGVPEE--------GEGRLRGAIEN 414 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LE+ ++ A+ H+ AA +LG L KLK+ G++ Sbjct: 415 --------LEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax=Rhodopirellula baltica RepID=Q7USH9_RHOBA Length = 514 Score = 330 bits (846), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 191/475 (40%), Positives = 277/475 (58%), Gaps = 13/475 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V+DDD +I + E+ALA + N A+ L L D +L DI++P +GLA+ Sbjct: 31 LLVIDDDRTILALAEKALAPIA-DVSVAANAADGLGLLREGEFDAVLLDIQLPDQNGLAV 89 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +I++ +PVI MT + + A+ A Q GAFDY+ KP +++ LVE+AI Q Sbjct: 90 YCEIREHDRRIPVIFMTVEAASNTAIEAMQLGAFDYIAKPLNVESLRDLVEKAIEQRQIS 149 Query: 126 QQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 P + + D IG +P M DVF+ +G++++ + +L+ GESGTGKELVA A Sbjct: 150 SVPVAISADDEGGDQSAELFIGRSPVMLDVFKAVGKVAKQDVPILVRGESGTGKELVARA 209 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 L ++S R+ F+A+N AA+P +L+ESELFGHEKGAFTGA + R G+FEQ +GGTLFLDE Sbjct: 210 LFQYSHRSDETFLAVNCAALPDNLLESELFGHEKGAFTGAESRRIGKFEQCNGGTLFLDE 269 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM VQ ++LRVL + +F RVGG + +VRIIAAT++ LEQ V +G +REDL +R Sbjct: 270 IGDMAPTVQAKVLRVLQEQRFERVGGNKELTTNVRIIAATNRPLEQMVVDGDYREDLLYR 329 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGV-EAKLLHPETEAALTRLAWPGNVRQ 359 LN + + LPPLR+R D+P L R FL A E + + L PE LT WPGNVRQ Sbjct: 330 LNGVTIELPPLRDRLSDVPALIRFFLAQAKIEFNKPDLEGLSPEAVDLLTVYDWPGNVRQ 389 Query: 360 LENT---CRWLTVMAA-GQEVLIQDLPGELFESTVAES--TSQMQPDSWATLLAQWADRA 413 L C TVM + L + G +ES +++ ++ + L Q R Sbjct: 390 LRAVIRRCVLDTVMPVITPDTLPDAIAGTRNSGAKSESGTNEKLESEAPGSQLPQLVQRL 449 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L+ N+ EA +ER ++ L+ T G++ +AA +LG R L ++ + Sbjct: 450 LKEKSTNVYGEAMEYMERFVILQVLQSTDGNQSQAAEILGITRGKLRDRINSYNI 504 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 279/467 (59%), Gaps = 23/467 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ +R LE L G ++ +N E + + S+ D++++D+R+P M+G+ L Sbjct: 5 ILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNMNGMEL 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+IK +P + V+IMTA+ L++AV+A ++GA+DY+ KPF DE + ++RA+ H Sbjct: 65 LKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQHKNTT 124 Query: 126 QQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R +Q +I+G + AM+ + + +S ++LI GESGTGKE +A A+ Sbjct: 125 AEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGKEKIAGAV 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H HS R PFI ++ AA+ ++++ESELFGHEKG+FTGA R+GRFE A+GG++FLD++ Sbjct: 185 HYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGGSIFLDDV 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 D+PLD+Q +LLRV+ + F RVGG + ++VRII AT ++L ++G+FREDLF+RL Sbjct: 245 DDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFREDLFYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQ--VAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 NV+ + +PPLRER++DIPRL +FL+ V+ E + + ET L WPGNVR+ Sbjct: 305 NVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPG--VSRETLNVLMEYNWPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN + + I LP L + + M + T+ Sbjct: 363 LENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTI-------------- 408 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L + E+E+ L+ A + T G++ + A +LG R TL KL L Sbjct: 409 -QLHDVLTEVEKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVRL 454 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 182/465 (39%), Positives = 279/465 (60%), Gaps = 13/465 (2%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 ++ VVDD+ SIR L L G ENGA+ L+ + + PD++L DI MPGMDG+ Sbjct: 4 LILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMDGIQ 63 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+QI+ P L V++M+ H ++ AV A + GAFD++ KPF +D+ + + A++ + Sbjct: 64 TLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFKEL 123 Query: 125 QQQPRNVQLNG-PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 +++ ++L+ +++G + ++ + I R++ +S VLI+GE G GKELVA A+H Sbjct: 124 RKENEALRLSALKEHEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVARAIHH 183 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 +S R PF+A+N A+P+ L+ ELFGHE+GA+TGAN+ ++GR + ADGGT+FLDE+ + Sbjct: 184 YSTRRDKPFVAVNCMAVPEALLADELFGHERGAYTGANSQKRGRLDLADGGTVFLDEVHE 243 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 + L Q LLR+L D F R GG PV++DVR++AAT ++LE+ VQ+G FREDL+ L V Sbjct: 244 LSLKAQGELLRILTDHSFERCGGSRPVRIDVRVVAATSRSLERAVQDGLFREDLYQFLQV 303 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + L PLRER EDIP L +HF+++ R G E K A L WPGN+R+L+N Sbjct: 304 VPFELVPLRERSEDIPLLVKHFVRLFHRREGWEPKTFDDSALACLKSYDWPGNIRELKNI 363 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 + +MAAG + DLP L +++S++Q A+ + A+ S L Sbjct: 364 VERILIMAAGPVITADDLPA-LMPGGNCKASSRLQE------AAEQGEAAVGS-----LR 411 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A+ ER + L + + +AA LL R L RKL + G+ Sbjct: 412 SARERFERDFILQTLLRSAWNLDKAAALLEMERTVLQRKLLQYGL 456 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 248/381 (65%), Gaps = 4/381 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ + R + G CTT+E+ E LE + PD++++DI+MP DG + Sbjct: 7 IVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMPQCDGFEV 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY--Q 123 L++ K P VI++T ++ +D+AV A ++GA+DYL KPF I++ + +A+ H Sbjct: 67 LEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKALQHIALT 126 Query: 124 EQQQPRNVQLN-GPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 E+ Q QL G TD IIG +QDVF IG++S S S+LI GESGTGKE++A A+ Sbjct: 127 EENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGKEVIARAI 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H++S R+ PFI ++ A++P++L+ESELFG+E+GAFTGANT +QG E A GGTLFLDE+ Sbjct: 187 HKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGGTLFLDEL 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++ +Q +LLR L + RVGG + +D+R++AAT+++LE+ ++ +FREDL++R+ Sbjct: 247 GELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFREDLYYRI 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LP L ER++DIP L HF + ++++ + PE A+ AWPGN+R+L Sbjct: 307 NVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWPGNIRELR 366 Query: 362 NTCRWLTVMAAGQEVLIQDLP 382 N ++ + V I DLP Sbjct: 367 NVVERAISLSGSEMVEISDLP 387 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 172/389 (44%), Positives = 249/389 (64%), Gaps = 3/389 (0%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ IR+ L L G +G + L LA +TPD++ DI MPGMDGLA+ Sbjct: 5 ILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDGLAV 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L Q+ + P LPVI+++ H ++ AV+A ++GA D++ KP +++ + +RA+ + + Sbjct: 65 LDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGDLR 124 Query: 126 QQPRNVQLNGPTT---DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 ++ ++ + PT ++ G +P M+ + I R++ + VLI GE+GTGKEL A A+H Sbjct: 125 RENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARAIH 184 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA P +A+N AAIP++LIESELFGHEKGAFTGA++ + G+FE A GTLFLDEIG Sbjct: 185 AGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDEIG 244 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DM L Q ++LR+L + QF RVGG+ ++VDVR+IAAT++NLE + G FREDL++RL Sbjct: 245 DMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYRLR 304 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V + LPPLRER D+P L F Q AR+ GV P+ + AL R WPGNVR+L N Sbjct: 305 VFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVRELRN 364 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVA 391 + ++ AG EV LP E + A Sbjct: 365 FVERMLILHAGLEVTRSMLPPEFLPRSGA 393 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 178/465 (38%), Positives = 285/465 (61%), Gaps = 13/465 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M++ IV ++DD+ +IR L+ AL G T + E L+ +A P + D+R+P Sbjct: 1 MRKKIV-IIDDEETIRLSLKEALMDLGYEAETAGDSWEGLKRIALFKPQAVFLDMRLPDG 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +GL L+++IK+ L V++MTA+ D+ AV+A + GAFDY+ KPF++DE ++ R Sbjct: 60 NGLQLIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTRIFD 119 Query: 121 HYQEQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKELV 177 + Q++ ++ + D IIG +M+DVF + LS + ++VLI GE+GTGKE+V Sbjct: 120 KLKLQKKIYLLEKEKLSNDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTGKEVV 179 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +SPR +A + +N AIP L+ESELFG+EK AFTGA ++G E ADGGT+F Sbjct: 180 ASAIHHNSPRKEASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEIADGGTVF 239 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ +D+QT+LLR L + +F RVGG ++V++R+IAAT+++LE+ +++ +FREDL Sbjct: 240 LDEIGELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEKKEFREDL 299 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ + LPPLR+R EDI LA+H+L ++ + E + L + W GN+ Sbjct: 300 YYRLNVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLKYHWKGNI 359 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N ++ + ++ LP E+ S + +QP ++ D Sbjct: 360 RELKNVLERTIILNDDSYIRLEHLPIEIVGSEEKTVATNIQP-----MIKIGEDIPKDFS 414 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRK 462 +N L E+E++ + TALR +G+ +AA +LG R L RK Sbjct: 415 LENYLQ----EIEKSYIQTALRLCKGNHSKAAYILGISRFALKRK 455 >UniRef50_A7HIN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Proteobacteria RepID=A7HIN1_ANADF Length = 484 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 206/498 (41%), Positives = 284/498 (57%), Gaps = 53/498 (10%) Query: 6 VWVVDDDSSIRWVLERALAGAGLT---CTTFENGAEVLEALASKTPDV--LLSDIRMPGM 60 V +VDD+ S+R+VL R AG+ + E + L AL V +L D+R+PG Sbjct: 4 VLIVDDEPSVRFVLGRTCERAGVPFEEAGSAEEARDKLRALGGGRNGVGLVLLDVRLPGD 63 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI--------DEAV 112 DG LL +I R +++MTA + +AV A ++GA DYL KPFD+ D A Sbjct: 64 DGFKLLGEIGGRSDSPFIVVMTAEDTMRSAVEAMKRGAADYLGKPFDLARVEKLVRDLAA 123 Query: 113 ALVERAISH-----------YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSS 161 A E A H + +PR +IG + AM +V++ IGR++R+ Sbjct: 124 AEPEGANGHELPEPGGIEREIEPHAEPRRFSEIALPETLIGRSAAMIEVYKEIGRVARTE 183 Query: 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGAN 221 ++VL+ GESGTGKELVA A+H +S RA+ PF+ +NMAAIPKDLIESEL+GHEKG+FTGA Sbjct: 184 MTVLLMGESGTGKELVARAVHANSTRARGPFVTVNMAAIPKDLIESELYGHEKGSFTGAV 243 Query: 222 TIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH 281 R G+FE A GGTLFLDEIG+MP+++Q +LLRVL + + RVGG P+ VDVRI+AAT+ Sbjct: 244 ERRPGKFELASGGTLFLDEIGEMPIELQAKLLRVLQEREVDRVGGTRPLPVDVRIVAATN 303 Query: 282 QNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLH 341 +L + V+EG+FR DL++RL V+ + LPPLRER D+ LARHF+ +L + Sbjct: 304 ADLARSVEEGRFRRDLYYRLAVVPIRLPPLREREGDVVLLARHFVAKYGEQLKGRPVAIA 363 Query: 342 PETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDS 401 + E L WPGNVR+L+N + + AG V +DL G L +T E Sbjct: 364 RDAEPLLLSHPWPGNVRELQNVVQRALLKLAGPRVTAKDLSGLLPAATGQE--------- 414 Query: 402 WATLLAQWADRALRSGHQNLLSEAQPELER----------TLLTTALRHTQGHKQEAARL 451 R L +++L PE R LL AL T G++ AA L Sbjct: 415 ----------RGLNGLVESILDAPAPEGGRYHAALATLEAPLLAAALARTNGNQLRAAEL 464 Query: 452 LGWGRNTLTRKLKELGME 469 LG RNTL +++ LGM+ Sbjct: 465 LGMNRNTLRERMRALGMK 482 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 190/468 (40%), Positives = 276/468 (58%), Gaps = 26/468 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 RG + +VDD+++ R L L G T T +G + L L PDV+L+D++MPG+D Sbjct: 3 SRGRILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGLD 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ ++++ + P ++MTA + +AV A ++GA++YL KP D +VERA+ Sbjct: 63 GIRMMEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVER 122 Query: 122 YQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q+ ++ + +I P+M V R++ +++ S SVLI GE+GTGKEL+ Sbjct: 123 ARLLQENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +HR SPRAKAP + LN AA+ + L+ESELFGHE+GAFTGA R+GRFEQA GGTLF Sbjct: 183 AEMIHRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ ++PL Q +LLR L + F RVGG +KVDVRI+AA++++L QR+ EG FREDL Sbjct: 243 LDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ + +PPLRERR DIP LA FL A+E G + E +ALT ++PGNV Sbjct: 303 YYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V+ G + ++ LP ++ S AES M +T+ Sbjct: 363 RELENAIERAAVLCDGARIELRHLPAQM-SSEPAESVDAMPRVPGSTIY----------- 410 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 +LER + L +G +AA +LG + KL E Sbjct: 411 ----------DLERYAILRTLEACKGSTSKAATILGISPRKIQYKLHE 448 >UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIF3_SORC5 Length = 460 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 185/469 (39%), Positives = 274/469 (58%), Gaps = 20/469 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M RG V V+DD+ +I L++AL+ G T E LA ++ D+ L D+ +P Sbjct: 1 MPRGHVLVLDDERAILTTLQKALSLEGYTVDVAGGVGVAEEKLAKRSYDIALFDVSLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL++I+ LPV++M+ H+ +DAAV A + GA D+L KP D + ++E + Sbjct: 61 DGVELLQRIRVSGSELPVVMMSGHATVDAAVRATRLGAIDFLEKPLSTDRLLLVLENTLR 120 Query: 121 HYQEQQQPRNVQL-NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + ++ G ++IGE+ AM D+ I R ++++ +V + GE GTGKELVA Sbjct: 121 LVRAEAEAKALRTQTGQVGELIGESRAMLDLREQIARAAKATATVFVTGERGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S RA+ P +N AA+P +LIESE+FGHE GAFTGA R+G+FE+A GGTLFLD Sbjct: 181 AIHGASKRARGPLEKMNCAAVPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GDMPL +Q +LLRVL + + RVGG+ +KVDVR++AAT++++E +EG+FR DL+ Sbjct: 241 EVGDMPLAMQAKLLRVLQEREIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYD 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + LPPLR RRED+P+LARHFL +A + L ++PGNVR+ Sbjct: 301 RLNVLPLSLPPLRARREDVPQLARHFLALATQANDRPGMAFTDGGMGVLVAYSFPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N L ++ + + D+ L A +P +LA+ A+RA Sbjct: 361 LRNIIERLVILTPDETIDEGDVKVCLGGQQAAMKGGLFRPGVPFRVLAEEAERA------ 414 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +L AL H G AR LG R+ L +K K LG+ Sbjct: 415 -------------ILEEALGHHGGQMAATARGLGLERSHLYKKFKALGL 450 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 327 bits (839), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 178/464 (38%), Positives = 278/464 (59%), Gaps = 28/464 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V+DD+ +IR L+ AL G T E+G +E D++++D++MP M G + Sbjct: 5 ILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSGELV 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ + P +P+II+T H ++ AV A +GA+D+L KP D++ LV RA+ + + Sbjct: 65 LQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNRELI 124 Query: 126 QQPRNV--QLNGPTT--DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q R + Q+ T+ +I+GE+PAM VF ++ + + S SVLI GESG GKEL+A+A+ Sbjct: 125 VQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANAI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H SPR P I ++ A+ + ++ESELFGHE+GAFTGA +GRFE A G++FLDEI Sbjct: 185 HNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDEI 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++ + VQ +LLRVL + F RVGG +KVDVR+I+AT++NL + ++ FREDL++RL Sbjct: 245 GEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ +H+P LRER+ED+P L FL+ A E G + + P+ ++AL WPGN+RQL Sbjct: 305 NVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIRQLR 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N +M++G + I+DL + ++ E++S P Sbjct: 365 NCIESAVIMSSGPVIHIEDLSEPI--RSLGETSSIRIP---------------------- 400 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + + + E+ ++ L +G+K + A +LG GR TL KL + Sbjct: 401 IGVSMEDAEKEIILQTLEAQKGNKSKTADVLGIGRKTLYLKLDQ 444 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 327 bits (837), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 176/463 (38%), Positives = 274/463 (59%), Gaps = 27/463 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ SI V++ L+ AG T ++ E L + + D+++SD + GL + Sbjct: 4 ILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLEI 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ +++ + P +I+TA+ ++ AV A ++GA Y+PKP DID + + I Y ++ Sbjct: 64 LESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLI----KIIDFYIKK 119 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 Q+ N + IIG++ M+D+F+ I +S+S S+LI GESGTGKELVA A+HR S Sbjct: 120 QE--NFDVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRS 177 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 RA PFI +N +AIP +L E+ELFGHEKG+FTGA+ G+ E A GTLFLDEIG+MP Sbjct: 178 KRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMP 237 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LLRVL + +F+RVGG +K+ R+I+AT++NLE+ V+ +FREDLF+R+NVI Sbjct: 238 LFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIH 297 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +PPLRER+EDIP L + F+ ++ + + L WPGNVRQLEN Sbjct: 298 LKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIE 357 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 V+ G+ + LP + +S SQ ++ +RS + +L Sbjct: 358 RAVVLCQGEIITANHLPDRI------KSNSQKISEN------------IRSENNSL---N 396 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++E+ ++ L+ ++ AA+ LG R L K+K G+ Sbjct: 397 LYDIEKNIILKVLQEENFNQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 327 bits (837), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 198/476 (41%), Positives = 272/476 (57%), Gaps = 34/476 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VVDD+ ++R +L L G T NGA+ LE +A + D +L DI+MP MDGLA Sbjct: 11 VLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDGLAF 70 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L + P VI+M+A+ +D AV A + GA+DY+ KPF DE + +++A +E+ Sbjct: 71 LAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKA--SERER 128 Query: 126 QQPRNVQLN--------GPT-TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + N+ L G T II ++ AMQ V +I +++ +VL+ GESGTGKEL Sbjct: 129 LKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKEL 188 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA +LH +SPRA I +N IP++L+ESELFGH KGAFTGA+ + G E A GTL Sbjct: 189 VARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAHKGTL 248 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++P +Q +LLR+L D + VG A +D+RI+AAT +NLE V EG FRED Sbjct: 249 FLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGVFRED 308 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL---AW 353 LF+RLNV+ +HLPPLR+R+EDIP L F+Q ++L L P AAL+RL W Sbjct: 309 LFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAP---AALSRLLAHTW 365 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 PGNVR+LEN V+A G + DL P + T A A Sbjct: 366 PGNVRELENLIERAVVLAEGDTITPDDL-----------------PPGFGTDSAGGPGDA 408 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + AQ E+ L+ AL T G++ ++LL +L K+KE G+E Sbjct: 409 LAGFDGYSIKAAQKIFEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 327 bits (837), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 181/465 (38%), Positives = 266/465 (57%), Gaps = 32/465 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ A+ G C +G L+ + ++ DV+++D+ M G+ + Sbjct: 8 ILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMHDFSGMEI 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK K++ P +I++T + ++ AV A Q+GA +L KP +I+ A + + + ++Q Sbjct: 68 LKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKLV---EKQ 124 Query: 126 QQPRN-----VQLNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 RN QL+ T IIG + +MQ V ++ ++S ++ +VLI GESGTGKEL+A Sbjct: 125 NLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGKELIA 184 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H +S R P + LN AAIP++++ESELFGHEKG+FTGA R+G+FE A GT FL Sbjct: 185 KTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRGTFFL 244 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL Q +LLRVL DG R+G ++VDVR+IAAT+Q L ++EGKFREDL+ Sbjct: 245 DEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFREDLY 304 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNVIR+ LPPLRER EDIP L F++ +R E + PE L R WPGN+R Sbjct: 305 FRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWPGNIR 364 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+N + V+ + + ++DLP + E S P S + + A Sbjct: 365 ELKNCIESMVVITTKKYLDVEDLPDHI------EKKSDEMPVSHGLMAGMTMEDA----- 413 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 E L+ L G+++EAAR+LG G TL RKL Sbjct: 414 -----------EIELIKCTLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGD9_RHOM4 Length = 472 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 180/471 (38%), Positives = 279/471 (59%), Gaps = 30/471 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP--DVLLSDIRMPGMDGL 63 + +VDD+ + + ER GL T+ N + +E L + D++++D +MP MDGL Sbjct: 11 ILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMPDMDGL 70 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL I+Q HP L VI++TAH+++ AV A Q GA DY+PKPF +E V V+ A++ + Sbjct: 71 ELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEELVERVQAALARRR 130 Query: 124 EQQQPRNVQ-------LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 EQQ+ R Q PT + +GE P ++ + ++ R++ + V I GESGTGKE+ Sbjct: 131 EQQEARAKQPARTSQRRARPTIEYVGEHPMIRRLKEMLPRVAANKAPVFIQGESGTGKEI 190 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A +H+ S RA+ PF+A+N A +P++L+ES LFGH KGAFTGA G FE+A+GGTL Sbjct: 191 LARLIHQMSDRAEGPFVAINCANLPRELVESHLFGHRKGAFTGAIEDMTGAFERAEGGTL 250 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEI ++ L +Q +LLRVL + + +VG P K+DVR+IA +++NL + + +G+FRED Sbjct: 251 LLDEITEVDLAIQAKLLRVLQEQEIQKVGSTEPRKIDVRVIATSNRNLSEAIAKGEFRED 310 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L+HRL+V + +PPLRER D+P L HF++ G+ K + + WPGN Sbjct: 311 LYHRLSVFPLSVPPLRERMSDVPLLVAHFIKKYCELYGLPPKKVSDALMERFMQYPWPGN 370 Query: 357 VRQLENTCRWLTVMAAGQEVL-IQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 VRQLEN + +++A +EV+ ++D+ + F A+ A + Sbjct: 371 VRQLENYVQRGVLLSAEREVIEVEDVFNDFFAD------------------AEPARQNAS 412 Query: 416 SGHQNLLSEAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + + LL Q ++ER ++ AL+ T ++Q AA+ LG T+ KLK Sbjct: 413 AEKEELLGRVQTIEDMEREMILRALKETNNNQQLAAQKLGISARTIRNKLK 463 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 179/472 (37%), Positives = 271/472 (57%), Gaps = 18/472 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 Q + +V+D+ R +L+ AL +G T N EA+ D+ L D+R+P + Sbjct: 3 QSAFILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L+++ + P + +IIMT ++++D AV A + GA D+L KPFDIDE + ++ I Sbjct: 63 GIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKT 122 Query: 122 YQEQQQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q + +N V+ T +IG+ PA+Q + + L+ S +VLI GESG GKE++ Sbjct: 123 RQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVL 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH+ R+ P +++N AIP++L+ESELFGH KGAFTGA R GRFE A+GGT+F Sbjct: 183 AKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM +Q +LLRVL + F VG + VDVR+IAATH++LE + G+FREDL Sbjct: 243 LDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI + LPPLRER +DI L HF+ ++ + + E + + WPGNV Sbjct: 303 YYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N +T + + ++DLP + +++ +Q A+ D Sbjct: 363 RELQNLIERVTTLKRHGIMELEDLPSRM----ISDKERVLQSFRMDVENAECID------ 412 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E L+ +AL+ Q +K +AA L R TL K+K+ G++ Sbjct: 413 ----LKSTVDEFESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGLQ 460 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 173/463 (37%), Positives = 274/463 (59%), Gaps = 20/463 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DDD ++ V+ G + +G + LE+LA P ++++D+RM + GL + Sbjct: 4 ILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGGLDI 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++ ++ P PVI++TA+ ++ A+ A + GA+DY+ KPF +DE ++RA+ + Sbjct: 64 LRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQSLV 123 Query: 126 QQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ RN V+ +IIG + MQ+++ +I +++ + ++LI GESGTGKELVA AL Sbjct: 124 RENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVARAL 183 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R PF+A+N +A+P++L+ESELFGH+KG+FTGA + G FE+A+GGT+FLDE+ Sbjct: 184 HFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEV 243 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 M +QT+LLRVL + Q RVG V ++VR++AAT++ L +++ G FREDL++RL Sbjct: 244 NSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRL 303 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 VI V +P LRER +DIP L HFLQ A + G EAK + P+ L + WPGNVR+LE Sbjct: 304 AVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRELE 363 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + + DLP ++ A S + Q D +R Sbjct: 364 NAVERACALCDDALIRTTDLPPQVIRHATAPPVEH----SGTLPVGQTLDEYIR------ 413 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 E ER + ++ +++AA++LG TL RKL+ Sbjct: 414 ------EQERRYIEETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 174/471 (36%), Positives = 279/471 (59%), Gaps = 20/471 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDD+ + R+ +++ L + NG +VL+ + + P ++ DI MP + Sbjct: 7 MHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQL 66 Query: 61 DGLALLKQIKQ-RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 DGL L++I++ +HP L V+I+TAH AV A ++GA+DY+ KP++++E + A+ Sbjct: 67 DGLKTLEKIREMKHPPL-VVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRNAL 125 Query: 120 SHYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 Q++ +++ +++G++ MQ+VF I ++ + ++VL+ GESG+GKE Sbjct: 126 EKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKE 185 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L AH +HR S R PFI +N AA+P+ LIESELFGHE+G+FTGA R G+FE A+ GT Sbjct: 186 LAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGT 245 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 + LDEIGDM L Q++LLRVL + +F R+GG + VDVRII+ATH++LE+ ++EG+FRE Sbjct: 246 ILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFRE 305 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++R+NV+ + +PPLR+R+EDIP L F+Q +++ + + L+ WPG Sbjct: 306 DLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWPG 365 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+RQL+NT V+ + I DL E + E + PDS + + R + Sbjct: 366 NIRQLKNTIESAIVLTNNDVLDISDLS----EDIIREEKT---PDSTKNVHYHLSFREAK 418 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +L E E+ ++ L G+ A L R L +K+K+L Sbjct: 419 K----ILIE---NFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIKDL 462 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 191/475 (40%), Positives = 276/475 (58%), Gaps = 40/475 (8%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V VVDD ++R L AG E+GA + + ++ DV+L+D+RMP +DG+ Sbjct: 29 GKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGM 88 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA----- 118 +L+ ++Q P VI+MTA+ +++AV A ++GA+D+L KPF E + V +A Sbjct: 89 EVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRR 148 Query: 119 ----ISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++ + E+ + R I+G +PAM++V + R++ + +VL+ GESGTGK Sbjct: 149 LLGEVNLFAEEFRKRY-----GLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGK 203 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA ALH S R+ PF+ +N AAI L+ESELFGH +GAFTGA R+G FE+A+GG Sbjct: 204 ELVARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGG 263 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLF+DEIG+ Q +LLR L +G+ RVG +PV+V+VRIIAAT+Q+L + + E +FR Sbjct: 264 TLFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFR 323 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF+RLNV+ + +PPLRERRED+P LA HFLQ + G E ++L PE A+L WP Sbjct: 324 EDLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWP 382 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+LEN + G+E+ D+ E + + Sbjct: 383 GNVRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVT------------------ 424 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L++A + ER +T AL AR LG TL RK+K LG+E Sbjct: 425 -------LADAVEDTERRAITAALARCGNDLGRVARDLGISGTTLWRKMKRLGIE 472 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 176/470 (37%), Positives = 276/470 (58%), Gaps = 21/470 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++D++ + ++E+ L +G + + + +E ++ D++++DI+MPGM GL + Sbjct: 7 ILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMPGMTGLEV 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+++K++ LPVII+TA++ ++ ++ A ++GA+D L KPF+ DE V V+ A+ Q Sbjct: 67 LQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNALQQAQLT 126 Query: 126 QQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ R ++ +IIG + A+++V + +++ S+LI GESGTGKEL+A A+ Sbjct: 127 EENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGKELIAQAV 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H HS R + F+A+N +P+ ++ESELFG+ KGAFTGA RQG E ADGGTLFLDE+ Sbjct: 187 HIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGGTLFLDEV 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P++VQ LLR L + +F RVG +VDVRII+AT+ +L++ V+ G FREDL++RL Sbjct: 247 GNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFREDLYYRL 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ +HLPPLR+R +DIP LA HF+ + ++ G K + L WPGN+RQL Sbjct: 307 NVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWPGNIRQLR 366 Query: 362 NTCRWLTVMAAGQEVLIQDLPG--ELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 N M A + + L +L E + +T Q P L Sbjct: 367 NVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVLSDDL-------------- 412 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +EA ER LL L+ G AAR G TL RK+K G++ Sbjct: 413 -PFTEALERFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKRYGLK 461 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 184/469 (39%), Positives = 273/469 (58%), Gaps = 19/469 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTC--TTFENGAEVLEALASKTPDVLLSDIRMPG 59 ++ +V VVDDD+ + +L R L C T +G L L PDV+ +D+RMPG Sbjct: 11 EKPLVLVVDDDAEMLTMLVRLL-NRKFDCRVETVASGEAALACLDRNRPDVITTDLRMPG 69 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DG++LL Q+K+ HP + VI+MT + +++ AV + ++GA+D++ KPFD + V +ER + Sbjct: 70 LDGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERCL 129 Query: 120 SHYQEQQQPRNVQLNGPTTDII----GEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + Q+ R +Q T + G + MQ+VF +I +++ ++++VLI GESGTGKE Sbjct: 130 ERVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGKE 189 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L ALH S RA P + +N A+P +++ESELFG+ KGAFTGA + G F +ADG T Sbjct: 190 LAVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGST 249 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 L LDEIGDMPL +QT+LLRVL + + +G VDVR++A+T+Q+LE ++ +G FRE Sbjct: 250 LLLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFRE 309 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL +RLNV+ + +P L ER EDIP LARHFLQ A E P TE L R W G Sbjct: 310 DLLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWKG 369 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L+NT + + ++ +G ++ P +L E + + TL + A R Sbjct: 370 NIRELQNTVKRVVLLTSGPQI----TPADLAEGGASPEEPPTGAEPMPTLTRLPYNEAKR 425 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 E R LT A+ + G+ AA+ G GR R L+ Sbjct: 426 --------EVLTSFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLR 466 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 186/467 (39%), Positives = 273/467 (58%), Gaps = 34/467 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + V+DDD+ IR +L + L + + ++GA + EA+ P+++L D ++P G Sbjct: 2 RANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDATG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL IK+ P VI++T H+ D AV A ++GAF + KPFD + + L++RA+ Sbjct: 62 LDLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRAL--- 118 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + R+++ T + I + M++V R + R++ S +S+LI GESGTGKE++A +H Sbjct: 119 ----EIRSLREAVSTGNAIFQCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIH 174 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA P I +N AA+P++LIESELFG KGAFTGA++ R+G F QA+GGTL LDE+ Sbjct: 175 SSSHRASGPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELS 234 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +MP+D Q++LLRVL + + VGG K D RIIAAT++ E+ +++GK REDLF+R++ Sbjct: 235 EMPIDTQSKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRIS 294 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 + VHLPPLRERREDI LA FL+ + + + PE L WPGNVRQL+N Sbjct: 295 AVSVHLPPLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQN 354 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + ++ G+ V D P + EST D+ TLL Sbjct: 355 EVQRAVLLCEGKLV---DAPDLSITAPANESTG----DTSYTLLEG-------------- 393 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER + L+ T G+K E A+ LG GR TL K+K G+E Sbjct: 394 ------VERNTIVQMLKETGGNKLETAKRLGIGRQTLYNKIKAYGIE 434 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 188/468 (40%), Positives = 264/468 (56%), Gaps = 29/468 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ + L AL G F + LEA+ + DV+ SD+R+P MDGL L Sbjct: 6 VAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLEL 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA---ISHY 122 L +IK P V+I+T + + A+ A ++GAF Y+ KP + E A+ RA I Sbjct: 66 LPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIGMR 125 Query: 123 QEQQQPRNVQLNGP-TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 E + R L + I+G +PA+QD+F ++ +++ +VLI GESGTGK LVA AL Sbjct: 126 MENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALAL 185 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H SPR PF+ N ++LI SELFG+EKGAFTGA+ + G E A GGT+FLDE+ Sbjct: 186 HHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLDEV 245 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+MPL +Q RLL VL + + RVGG PV +D+R+IAAT+++L+ V++G FREDLF RL Sbjct: 246 GEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFFRL 305 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ LP L +RREDIP L RHF+ + + + AAL ++PGNVR+LE Sbjct: 306 NVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVRELE 365 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + GQ + + DLP ++ A ++ D TL Sbjct: 366 NIIERAVALTDGQTIGLLDLPEDIRNLEFA----TLEGDGLPTL---------------- 405 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+ER + L T +K+ AA++LG R TL RKLKE G+E Sbjct: 406 -----AEVERRYVIRILEKTGYNKRLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 324 bits (831), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 191/476 (40%), Positives = 275/476 (57%), Gaps = 39/476 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ S+R L L G +G + + L + D+++SDI+MP +DG L Sbjct: 30 ILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDGFGL 89 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L +K+R +I++TA S + AV A ++GA+DY+ KPF +E +VE A+ + Sbjct: 90 LDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALERMDLR 149 Query: 126 QQPRNVQLNG------PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 ++ N+QL +IIG++ MQ V+ +I ++S S ++VLI GESGTGKELVA Sbjct: 150 RE--NLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVAR 207 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+A+ AIP++L+ESELFGHEKGAFTGA +QG FE ADGGTLFLD Sbjct: 208 AIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLD 267 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI ++P +Q +LLRV+ + +F +VGG +KVDVR++AAT+++L Q V E +FREDL++ Sbjct: 268 EIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYY 327 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAAREL------GVEAKLLHPETEAALTRLAW 353 RLNVI+V LPPLR+RREDIP L HFLQ GV + L W Sbjct: 328 RLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFSTTIPDGVMRRFLD---------YHW 378 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 PGN+R+LENT V+ E+ LP + T Q L + + Sbjct: 379 PGNIRELENTVERCVVLGGKGEITEDSLPPHML---CISGTGDQQ-------LTELPEEG 428 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L L + +E+ +L AL T G ++ AA LL ++ +L + G+E Sbjct: 429 LD------LDDYLGAIEKDILLKALDRTGGVRKRAAELLHITFRSIRYRLAKFGIE 478 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 184/466 (39%), Positives = 273/466 (58%), Gaps = 30/466 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPD--VLLSDIRMPGMDGL 63 + VVDDD ++ + L G NGA+ +E + SK P+ ++L+D MP MDG+ Sbjct: 4 ILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERI-SKDPEYAIVLTDFVMPEMDGI 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL +IKQ + + VI+MT++ + +AV A + GA DY+ KPF DE V ++E+ + + Sbjct: 63 QLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQMQR 122 Query: 124 EQQQPRNV--QLNGPTT--DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + +L T +IIGE+P ++ ++ II +S + ++LI GE+GTGKELVA Sbjct: 123 LEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAK 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R F+ ++ +++ + L+ESELFGHEKGAFTGA R GRF +AD GT+FLD Sbjct: 183 AIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ L VQ +LLRVL D +F VG +KVDVRIIAAT+ +LE V++G FR DLF+ Sbjct: 243 EIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVIR+ LPPLRER EDIP LA HFL + ++ + +T LT AWPGN+R+ Sbjct: 303 RLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN ++ + +D+P L++ + R SG Sbjct: 363 LENVIERAVILCKKNRITPEDVP--LYQE-------------------KMGTRPGLSGKP 401 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 L E + ER ++ L K++ A++L R +L KL + Sbjct: 402 --LQELLEQTERQIIINTLEANDADKEKTAKILKISRASLYNKLNK 445 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 191/462 (41%), Positives = 269/462 (58%), Gaps = 22/462 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V V+DDD ++ + +L G +CT G + L + DV+L+D++M + GL + Sbjct: 10 VLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMADLHGLEV 69 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +++ KQ P V ++T +D+ AV A ++GA YL KP D+ E A++E + Sbjct: 70 VERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENSAKRVGTL 129 Query: 126 QQPRNVQLNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 ++ R QL+ ++G +P MQ V +++ + SS SVLI GE+GTGK+L A ALH Sbjct: 130 RELRR-QLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARALHT 188 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 + PR PF A+N A + + L++SE+FGHEKGAFTGA+ R GRFE A GGTLFLDEIGD Sbjct: 189 NGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGTLFLDEIGD 248 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 MPL +Q +LLR L +G+ RVG P+KVDVRIIAAT+++L++ V+ G+FR+DL+ RL V Sbjct: 249 MPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQDLYFRLKV 308 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 V LPPLRE REDIP+L HFL+ AR + P + WPGNVR+L N Sbjct: 309 GTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPGNVRELRNL 368 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 + V+ DL GEL T P+ A A+R G L+ Sbjct: 369 LASMMVL---------DLDGEL--------TPDDFPEDPGVKPAGTAERP--HGPDQLVG 409 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E+ER + AL T G+++EAARLL TL RK++E Sbjct: 410 RPLDEVERYYIEKALDLTGGNREEAARLLNISERTLYRKIQE 451 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 274/466 (58%), Gaps = 26/466 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD+ R L L G T NG + + + + D++ D++MPGMDG+ Sbjct: 6 IMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGMEA 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA------I 119 L+++K VI+MTA+ +++AV A ++GA+DY+ KPF D+ L+ R I Sbjct: 66 LEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNERQKLI 125 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + NV + + + + M ++ + ++++S SVLI GESGTGKELVA Sbjct: 126 AENKYWRSASNV--DEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVAR 183 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H SPR + PFI +N AA+ + L+ESELFGHE+GA+TGA R GRFE A+ GTL LD Sbjct: 184 AIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLD 243 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+ ++ ++Q +LLRVL + +F RVGG +K+DVRI+A T+++L + +Q+G FREDLF+ Sbjct: 244 EVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFY 303 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ +HLPPLRERREDIP LA +L+ + E K + L++ WPGNVR+ Sbjct: 304 RLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGNVRE 363 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N + VM + +E+ +++ + + +S M DS ++ Q Sbjct: 364 LKNIMQRAVVMGSSEELGLENFTSLI---DIKKSEHTMCNDSV----------NIKKNGQ 410 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 ++ + E+ L+ T L T G+K +AA LL TL KL + Sbjct: 411 SI-----EDAEKELIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNK 451 >UniRef50_UPI00016C50F5 nitrogen regulation protein NR(I) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C50F5 Length = 475 Score = 324 bits (830), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 194/476 (40%), Positives = 266/476 (55%), Gaps = 25/476 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ I W L RA + L PDV+ D+++PGMDGL Sbjct: 5 ILIIDDEEPIAWALRRAFERDKHRVAVAATAEDGLVKARLHPPDVVFLDVKLPGMDGLTA 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L ++K+ P V+++TAH +L+ AV A + GAFDYL KPF++ +AV +RA+S+ E Sbjct: 65 LGELKKTAPNAAVVVITAHGNLNTAVKAVEGGAFDYLAKPFELAQAVDATKRALSNRSED 124 Query: 126 QQPRN--VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 R + + IIG +P+MQ VF+ I +++ S+ VLI GESGTGKELVA A+H Sbjct: 125 TGARESLAEEDHSPDAIIGRSPSMQTVFKRIAKVAPSNACVLITGESGTGKELVARAIHA 184 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 +SPR P + ++AA +L+ESELFGH KGAFTGA R G + ADGGT+FLDE+ D Sbjct: 185 NSPRRHKPLVPAHVAAFNPNLVESELFGHVKGAFTGAERARDGLLKLADGGTVFLDELAD 244 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 +PL VQ +LLRVL + VGG VDVRI++ATH +L V+EGKFR DLF RLNV Sbjct: 245 IPLPVQAKLLRVLERQEVQAVGGSDSQTVDVRIVSATHADLSSAVREGKFRHDLFFRLNV 304 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGV--EAKLLHPETEAALTRLAWPGNVRQLE 361 +HLPPLR+R +DIP LA HFL R+ GV A + ET A L WPGNVR+L Sbjct: 305 YPIHLPPLRDRVDDIPFLAEHFL----RKFGVLNPAGAVPAETIAFLKSRPWPGNVRELR 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + + G + + P E ++ P S L A +R Q L Sbjct: 361 NALEHAAIESRGGPLRPEHFP---------EPSTAAGPVSLTERLRSLATEWVREQVQQL 411 Query: 422 LSEAQPEL--------ERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E +L E +L LR G++ AAR LG R T+ + +++ E Sbjct: 412 EGEEPADLHLKLIEAIEPAVLDETLRQVDGNRLVAARWLGLARATVRKLIRKYHPE 467 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 324 bits (830), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 182/470 (38%), Positives = 265/470 (56%), Gaps = 37/470 (7%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + DD+ + R ++ + L G T +G E ++ + + DV + D+ MP M+ Sbjct: 3 KKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMPVMN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LK++K P VII+T ++ AV A + GA+DYL KP + E L++RA+ Sbjct: 63 GIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRALEK 122 Query: 122 YQEQQQPRNVQLNGPTTDI------IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + ++ N L D+ IG +PA++ VF++I + + S ++VLI GESGTGKE Sbjct: 123 RKLSRE--NFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A +H++S RA PF+ +N A + + L+ESELFGH KGAFTGA R G FE A+GGT Sbjct: 181 LAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ ++ Q +LLRV+ G+ RVG + VD RIIAATH+NL V+EG+FRE Sbjct: 241 LFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL+ RLNVI + LP LRER++D+ L +HFLQ + G +HPE A+T WPG Sbjct: 301 DLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDWPG 358 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+LENT V+A G + I++LP + R Sbjct: 359 NIRELENTIERTVVLADGNIISIEELPDNI--------------------------RGRT 392 Query: 416 SGHQNLLSE-AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 H E A E+E+ + L+ HK AA+ LG TL K+K Sbjct: 393 YEHYGKNGEIALSEVEKNHIIQVLKEKNWHKPLAAKTLGISLKTLYNKMK 442 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 186/467 (39%), Positives = 270/467 (57%), Gaps = 11/467 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ S R L ++ G+ T +G E LE L S DV+L+D+ MPG+DG Sbjct: 7 VLIVDDEESQRAGLAAMVSAWGMLPKTAADGNEALETLNSFPADVILTDLNMPGLDGFGF 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAV-SAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+++++ M P I++TA+ +++ AV + ++ GA+ +L KP LV RA SH + Sbjct: 67 LQRLREAGDMPPTIVLTAYGNIETAVKTVHELGAYWFLEKPIQAGTLEVLVRRAGSHAEL 126 Query: 125 QQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q+ R N+ G +++G++P MQ++F ++ + S VLI GESGTGKE+VA Sbjct: 127 NQEKRVLERNLVYKGSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGKEMVART 186 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH SPR + PF+A+N AA+P+ LIESELFGHEKG+FTGA R G FE A GTL LDE Sbjct: 187 LHALSPRRQGPFVAINCAALPESLIESELFGHEKGSFTGATERRAGCFELAQNGTLLLDE 246 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG+MP+ Q +LLR+L D + R+GG +VDVR++AAT++ E+ VQ G REDLF+R Sbjct: 247 IGEMPMATQAKLLRILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQGGHLREDLFYR 306 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV VHLPPLR+R++DI +A + R+ + L R WPGNVR+L Sbjct: 307 LNVFHVHLPPLRDRKDDIQAMADALIADLNRKHECRVTEIAAAVMTCLQRHNWPGNVREL 366 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N ++A + ++ LP ++ A + +P + A A + + Sbjct: 367 RNVLERAVILAGEGTIEVKHLP-VFLQNRPATVVASDEPAAVAATAADDLETV-----RF 420 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 L+ E E+ L+ L HT +K AA +LG TL KLKE G Sbjct: 421 LIGTTVEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLKEYG 467 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 170/381 (44%), Positives = 243/381 (63%), Gaps = 4/381 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ + R L L+ G +G E L L P +L+D+RMP MDG+ L Sbjct: 15 ILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDGINL 74 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++ +++ ++MTA + ++AAV A + GA +YL KP D++ + ++E+A+ + Q Sbjct: 75 LRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKLRLQ 134 Query: 126 QQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + N V+ +I+G+AP + V+ ++ R + + +VLI GESGTGKEL A AL Sbjct: 135 RDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQAL 194 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H SPRA FI +N AA+ + L+ESELFGHEKGAFTGA ++GRFE ADGGTLFLDEI Sbjct: 195 HEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEI 254 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD+ +Q +LLRVL +F RVGG +KVDVR++AAT+++L V+ G+FREDL++RL Sbjct: 255 GDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRL 314 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ V LPPLR+R+ DIP L HF+ ++ G + + L P T A+ WPGNVR+LE Sbjct: 315 NVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVRELE 374 Query: 362 NTCRWLTVMAAGQEVLIQDLP 382 N V+ G E+ DLP Sbjct: 375 NVVERAVVLCKGSELTADDLP 395 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 278/470 (59%), Gaps = 23/470 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 +V VVDD+S I L + GL +GAE LE L VLL+D+ MP G+ Sbjct: 17 VVLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMD 76 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---SH 121 LLK K P V++MTA+ ++ AV A ++GA+D++ KP V +V+ A+ S Sbjct: 77 LLKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSL 136 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 E + R + +IG + A + I+ + + S +VL+ GESGTGKEL+A +L Sbjct: 137 VVENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSL 196 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA PFIA+N AAIP+ ++E ELFG+EKGAFTGA + R+GRFE A GGTLFLDE+ Sbjct: 197 HEGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEV 256 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVK-VDVRIIAATHQNLEQRVQEGKFREDLFHR 300 G+MP VQ +LLRVL +G+ R+GG + +D+R+IAAT+ L + VQEG+FREDL++R Sbjct: 257 GEMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYR 316 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL---AWPGNV 357 LNVI + +PPLRERR+DIP L +HFLQV A + G K + T+ AL RL AWPGNV Sbjct: 317 LNVISIAVPPLRERRDDIPLLVQHFLQVYADKNG---KFMAGCTQDALDRLCRYAWPGNV 373 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V++ G+ + LP E+ A + + D L Sbjct: 374 RELENAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGAL------------ 421 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + + E+E ++ LRHT+G K+ AA+LLG T+ R+L+ G Sbjct: 422 -RFAVGTPLAEIEMAVIHETLRHTKGDKRLAAKLLGIATRTIYRRLEAEG 470 >UniRef50_C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX78_DESBD Length = 446 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 196/471 (41%), Positives = 276/471 (58%), Gaps = 27/471 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R I+ VVDD+ R + R L AG + A+ LE + +TPD+++SD+RMP Sbjct: 1 MNRSIL-VVDDEIRYRELYARVLRDAGFDVHEAGSAADALEFMDRRTPDMVVSDVRMPAE 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER--A 118 GL LL++++ P LP +++TA++D+ AV A + GA DYL KP D+DE +A V Sbjct: 60 SGLDLLRRVRAEKPELPFLLVTAYADVREAVDALKLGAVDYLAKPVDLDELLAAVRDTLG 119 Query: 119 ISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + P T I+ E+ AM+ V R R++ S ++L+ GESG+GKE+VA Sbjct: 120 VGAGAGGEIP-----AASLTGIVAESLAMRSVLRDAYRVAPSDATILLTGESGSGKEIVA 174 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +HRHS R+ P + +N AAI L+ SELFGHEKGAFTGA T R+G F +A GTLFL Sbjct: 175 QFIHRHSARSAKPLVPVNCAAIAPTLLASELFGHEKGAFTGAVTKRKGYFREAHEGTLFL 234 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL++Q LLR G+ VG +D R+IAAT+ +LE V EG+FR+DL+ Sbjct: 235 DEIGDMPLELQPSLLRATETGRITPVGSDKETVIDCRLIAATNHDLETDVAEGRFRQDLY 294 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +PPLRER EDIP LAR FL + EA+ L L WPGNVR Sbjct: 295 YRLNVITIDIPPLRERPEDIPPLARLFLN----KDKTEARRLSRAAMQTLISHPWPGNVR 350 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N + +++ +L + LP V +S + P+S + Q A ++ Sbjct: 351 ELANAMAHVRLLSQTDVILPEHLP-----PAVRKSAGKAAPESRIP-VEQDAPAQTKTLE 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 Q+ E+E +T AL+HT+G++ AA+LLG R L KLK LG+E Sbjct: 405 QH-------EIE--AVTAALKHTKGNRTHAAQLLGITRRGLIYKLKRLGLE 446 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 188/473 (39%), Positives = 276/473 (58%), Gaps = 28/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + VVDD++ R L L AG + +G E L ALA + D++L+D+RMPGM Sbjct: 1 MSRARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL +K+R P + VI++T H+ +D AV+A GAF Y+ KP ++E +A +A+ Sbjct: 61 DGLELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKALE 120 Query: 121 HYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +++ R + +IG++ M+ + I +++R +VL+ GE+GTGKEL Sbjct: 121 KNAMRRELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA +H S RA+ F+A+N A ++LI +ELFGHE+ AFTGA R+G E A GGTL Sbjct: 181 VARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++PL +Q +LLRVL + F RVGG +D R+++AT+++L++ + G FR+D Sbjct: 241 FLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFRQD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RL+VI +H+PPL ERREDIP LARHFL A E G + L PE +L +PGN Sbjct: 301 LFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNVR-LSPEVLDSLLLYEYPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + + G + + L +L + V + + SW TL Sbjct: 360 VRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRK--SWPTL----------- 406 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E E+ + L +G+K +AAR+LG R +L RKLK +E Sbjct: 407 ----------EEHEKAYIRDVLEEVEGNKSKAARVLGIDRVSLWRKLKRYSLE 449 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 323 bits (828), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 184/465 (39%), Positives = 272/465 (58%), Gaps = 19/465 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V DD+ IR ++ L G T NG E ++AL S PDV+L D +MP + G+ Sbjct: 5 IVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTGVEA 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++IK+ P V+ +TA + AV A ++GA+D++ KPFD D+ + V RA+ H + + Sbjct: 65 LEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHCRMK 124 Query: 126 QQPRNVQ--LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + ++++ L T IIGE ++ V + R++ + +VLI+GESGTGKEL+A A+H Sbjct: 125 GEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAIHD 184 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S R PF+A+N AIP L+ESELFGHEKGAFT A + G FE+A+GGTLFLDEIG+ Sbjct: 185 RSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEIGE 244 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 +PLD Q +LLRVL + + R+GG + V+VRI+AAT++NLE+ V+ GKFR DL +RLNV Sbjct: 245 LPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRLNV 304 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + LPPLRER+EDIP LA FL+ L + + + PE L WPGNVR LEN Sbjct: 305 FTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDLENA 364 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 + ++ +++ LP + + T+ + + D +LR N L+ Sbjct: 365 VQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEE---------DTSLRD--TNSLA 413 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ + +AL+ ++ A L R TL K+K + Sbjct: 414 ------EKARILSALQKHNYNRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 323 bits (828), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 176/463 (38%), Positives = 272/463 (58%), Gaps = 20/463 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD + L L+ AG T +GAE + L + DV+++D+ MPGMDG+ + Sbjct: 10 ILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMDGMGV 69 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK +++ +++T + +V A + GAFDY+ KP DE + V AI + + Sbjct: 70 LKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKFKRLE 129 Query: 126 QQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + ++ + +G++P +Q VF +I +++ + +VLI GESGTGKEL+A A+ Sbjct: 130 RENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAI 189 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +SPR P + +N AIP++L+ESELFGHEKGAFTGA+ R GRFE A+GGT+FLDEI Sbjct: 190 HYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEI 249 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM ++Q +LLRV+ + F R+G + VD+RI+AAT+++L + V++ +FREDL++RL Sbjct: 250 GDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRL 309 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + +PPLR+R+ DIP L F+ A E K + AL WPGNVR+LE Sbjct: 310 NVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRELE 369 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + ++++G + +DLP + +P++ L + +R H Sbjct: 370 NVVERVLILSSGDTIDKEDLPATIL------GLDSKEPEAGLKLPSG----GIRFDH--- 416 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 A E E+ L+ AL K +AA+LL R TL K+K Sbjct: 417 ---AVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMK 456 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 323 bits (828), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 180/467 (38%), Positives = 265/467 (56%), Gaps = 23/467 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V DDD + +L+ L LT +G + L+ L D++++D +MPG+DG L Sbjct: 7 ILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMPGLDGFEL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ +K R +P +++TAH +D ++A + GA +YL KP D + V LVE+ ++ + + Sbjct: 67 LQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKTLNINRMK 126 Query: 126 QQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + V+ T+I+G++P MQ +F I + S+S+ +VLI GESGTGKEL A A+ Sbjct: 127 SRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGKELAAKAV 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H + P + PF+A+N +A +ESELFGH KGAFT A+ GRFE A+ GTLFLDE+ Sbjct: 187 HYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKGTLFLDEV 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD+P D+Q +LLRVL D F RVG P+ D R++AAT+++L+ V++GKFREDLF+RL Sbjct: 247 GDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFREDLFYRL 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + P LRE EDIP L HFL+ + G K L + WPGNVRQLE Sbjct: 307 NVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWPGNVRQLE 366 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N M G + DLP E T +S ++ D++ L + +R Sbjct: 367 NAIESAAAMCDGSMIRTADLP---LEITAPQSEDPLREDAYRGTLPEVVER--------- 414 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +E+ ++ AL Q K AAR LG ++ K+ G+ Sbjct: 415 -------IEKHMILRALEQNQWVKAHAARTLGVSERVVSYKMANYGL 454 >UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Anaeromyxobacter RepID=Q2IK30_ANADE Length = 466 Score = 323 bits (828), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 187/460 (40%), Positives = 265/460 (57%), Gaps = 18/460 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ S+R L+ + G G + +E LE L + DVL++D MP MDGLAL Sbjct: 4 VLLVDDEPSVRAALKELVQGRGWEPVLACSASEALEQL--ERADVLVTDFSMPEMDGLAL 61 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ +++R LPVI++TAH AV A + GA++Y+PKPFD+DE + RA+ + Sbjct: 62 LQAVRERDEWLPVILLTAHGSERLAVRAMKAGAYEYVPKPFDVDELALAIGRALEARLLR 121 Query: 126 QQPRNVQL-NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 Q+ R + + + ++ E+ M+ V R++ I+VL+ GE+GTGKEL+ LH Sbjct: 122 QRNRQLTVEHAIGRRLVFESANMRQVLAATARVAAREITVLVRGETGTGKELIGTLLHAL 181 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S RA P + N +AIP +L E+ELFGH +GAFTGA R G F QADGGTL LDE+G++ Sbjct: 182 SKRAAGPLVRFNCSAIPAELAEAELFGHVRGAFTGAVQARPGFFAQADGGTLVLDEVGEL 241 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +Q +LLR L +G+ VG +VDVRI+A TH++L VQEG+FREDL++RL V+ Sbjct: 242 PLGIQAKLLRTLQEGEIQPVGSGRVERVDVRIVACTHRDLRADVQEGRFREDLYYRLAVV 301 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +PPLR+RREDIP LA F A G E L P L + WPGNVRQLEN Sbjct: 302 ELTVPPLRDRREDIPALAHEFALRYAERFGSEDVRLAPALVERLVKADWPGNVRQLENVV 361 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 + ++ G E+ + A + + T R LR+ Sbjct: 362 ARMVALSGGGEIGPDAFEATGAPAGGAGRPAAPPSEGEGT-------RTLRAQLD----- 409 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 ELER ++ + +G++ EAAR LG RNTLT +L+ Sbjct: 410 ---ELERAVIARTMVAVRGNQSEAARRLGISRNTLTERLR 446 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 323 bits (828), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 192/466 (41%), Positives = 276/466 (59%), Gaps = 5/466 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG-MDGLA 64 V +VDD+ +IR ++ L+ G +G+ L + PDV L D+ MPG +DGL Sbjct: 4 VLIVDDEPNIRRMVGALLSSEGYDVRDASDGSTGLALAETSEPDVALIDLMMPGDLDGLG 63 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL+++++R P +PV++M+ + L AV A + GAF +L KP + + + A Q Sbjct: 64 LLEKLRERRPDMPVVMMSGRAALTDAVRATRLGAFTFLEKPLTPEGVLLALASAFELRQA 123 Query: 125 QQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 ++ ++ + G + ++IG++PAM+DV ++ R+ + VLI GESGTGKEL A ALH Sbjct: 124 RRAAAALREDLGISGEMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAALHV 183 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S R PF+ +N AAIP+DL+ESE+FGHE+GAFTGA R GRFE A GTLFLDE+GD Sbjct: 184 SSARRDRPFVRVNCAAIPRDLVESEMFGHERGAFTGATERRIGRFELAHTGTLFLDEVGD 243 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 + + Q +LLR + + RVGG P+KVDVRI+AAT+++L + V +G FREDLF RLNV Sbjct: 244 LGAEAQAKLLRAIEAREIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFRLNV 303 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 I +HLPPLR+R D+P L RHF G H AL+ WPGN+R+L N Sbjct: 304 IPIHLPPLRDRPGDLPALVRHFSARHRTRTGRPLVQWHESALGALSAYRWPGNIRELANV 363 Query: 364 CRWLTVMAAGQEVLIQDLPGELFES-TVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 L ++ AG EV ++ L E+ + +TS + + A D A S L Sbjct: 364 VERLAILHAGSEVTRTEVRQVLPETAALPGATSAVPSGTEAGTEVDTPDPA--SAAHMPL 421 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 S+A ER L++ AL + G+ EAAR L R L R+++ LG+ Sbjct: 422 SDALDAYERRLISAALAQSDGNVAEAARRLQTDRPNLYRRMRRLGL 467 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 189/470 (40%), Positives = 266/470 (56%), Gaps = 38/470 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD R + + L+ +G LE + DV + D++MPGM GL L Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY--- 122 L K +HP VI++T +++AV A + GAFDYL KPF + + +E+A + Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDRHLLR 128 Query: 123 QEQQQPRNV-QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 +E QQ + + + P + +IG++ AMQ++ R+I R S ++LI GESGTGKELVA AL Sbjct: 129 KENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARAL 188 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA P + +N AA+P+ L+ESELFGHEKGAFTGA + G FE ADG TLF+DEI Sbjct: 189 HAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLFIDEI 248 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+MP +Q +LLRVL DG R+G +V+VRI+AAT+++++ V G FREDL++R+ Sbjct: 249 GEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDLYYRI 308 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + LPPLR R DIP L HFL R + P +AL + AWPGNVRQL Sbjct: 309 NVMSLELPPLRSRTADIPLLVEHFLGKDWR--------IEPTALSALEQYAWPGNVRQLI 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP--DSWATLLAQWADRALRSGHQ 419 N +MA G+ + DLP E+ A ++ P D L A Sbjct: 361 NAIERAKIMADGRTIRANDLPTEVLH---ALPQIELPPSLDDIDDLSA------------ 405 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++R + L+ +G+K AAR+LG R L R L++ +E Sbjct: 406 ---------IQRQKIVEVLKREKGNKSRAARMLGIDRRKLYRLLEKFTIE 446 >UniRef50_B3QKR1 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Rhodopseudomonas palustris RepID=B3QKR1_RHOPT Length = 495 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 198/480 (41%), Positives = 279/480 (58%), Gaps = 19/480 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL-ASKTP--DVLLSDIRMPGMDG 62 + + DDD+ R ++E + G + ++G +EAL A P D ++ D+ MPG+DG Sbjct: 5 ILIADDDAVQRRLVENMVQKCGYEAVSVDSGDAAVEALTAPDAPAIDAVVLDLVMPGLDG 64 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L +I+ +PVI+ TAH +D VSA + GA D++ KP I+ + A++ Sbjct: 65 LGVLSKIRASGLDVPVIVQTAHGGIDNVVSAMRAGAHDFVVKPVGIERLQVSLRNALNAS 124 Query: 123 Q---EQQQPRNVQLNGPT-TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 E Q+ R+ + T +DII + AM V R + + S+I VLI GESG GKEL A Sbjct: 125 AMKGELQRIRHAREGRLTFSDIITRSEAMAPVLRAAEKAAGSAIPVLIEGESGVGKELFA 184 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R PF+A+N AIP +L+ES LFGHEKGAFTGA G+F +A GGTLFL Sbjct: 185 RAIHGSSDRRSKPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHDGKFVEASGGTLFL 244 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ ++PL Q +LLR L +G VGG PVKVDVRII+AT++ L RV+ G+FREDLF Sbjct: 245 DEVSELPLAAQVKLLRALQEGAVEAVGGRRPVKVDVRIISATNRRLLDRVKAGQFREDLF 304 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+V+ + +PPLR RREDIP L RHFL E + E A L +L WPGN+R Sbjct: 305 YRLHVLPLTIPPLRTRREDIPPLLRHFLMRFCAEEKRSIGGITGEAMARLAQLDWPGNIR 364 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA----- 413 QLEN VM+ G ++ + D P + S V + +P Q+ + Sbjct: 365 QLENAVYRAVVMSDGDQLGLADFPLAIAPSVVPAEDTTGEPLVIERSEPQFVAASEVPIA 424 Query: 414 -LRS-GHQNLLS---EAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L S G+ ++L+ E +P E+ER ++ A+ H +G E AR L GR+TL RKL E+ Sbjct: 425 PLPSVGNLSMLTADDEVRPLDEMEREIIRFAISHYRGQMSEVARRLKIGRSTLYRKLDEI 484 >UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4P1_9PLAN Length = 469 Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 188/470 (40%), Positives = 275/470 (58%), Gaps = 15/470 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPGMDGLA 64 + VVDD+ SI W L++ G + AE ALA P D+++ D+R+PGMDGL Sbjct: 4 LLVVDDEPSICWGLKQLGKRLGHE-VQIASSAEQGIALAGTAPYDLVMLDVRLPGMDGLT 62 Query: 65 LLKQIKQRHPML---PVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 LKQ+ HP+L PV+IMTAH DL AV A + GA +YL KPFD+ + L+ + ++ Sbjct: 63 ALKQL---HPLLHGAPVVIMTAHGDLSTAVEAVRGGAREYLLKPFDLTQIEQLLAKLLAQ 119 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 +P N+ + T ++G++ AMQ+VF+ I ++ S VL++GESGTGKELVA A+ Sbjct: 120 KAAPAEPANLHRSSQTDGLVGQSLAMQEVFKRIALVAASEACVLVSGESGTGKELVARAI 179 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR+S RA PF+ +N+AA+ L+ESELFGH +G+FTGA+ +G ADGGTLFLDE+ Sbjct: 180 HRYSDRASGPFVPVNIAALNPSLVESELFGHTRGSFTGADHAHEGLLLAADGGTLFLDEV 239 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 D+PL VQ +LLR L G+ VG K R+++ATHQ+L V G+FR DL++RL Sbjct: 240 ADIPLPVQVKLLRTLDHGEVMPVGSGQTKKTRFRLVSATHQDLPALVASGQFRHDLYYRL 299 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 ++ LPPLR+R +D+ LA+HF +A R L PE + WPGN+R+L Sbjct: 300 CTFQITLPPLRDRGDDVQLLAQHFASMAGRALQ-----FAPEAMKEIRSRHWPGNIRELR 354 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWA-DRALRSGHQN 420 + ++A +L + LP + + + + + D T L +WA R +G Sbjct: 355 SAIEHAMIVARDGVILSEHLPASIAVPRTSPANTGDERDQITTRLREWALARVKEAGETG 414 Query: 421 LLSEAQPEL-ERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E +L E LL L+ +G AAR+LG R T+ +K+ E G++ Sbjct: 415 ELYEELLKLVEPPLLEAVLKKCKGQCATAARILGMHRTTVRKKIDEYGLQ 464 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 190/470 (40%), Positives = 267/470 (56%), Gaps = 31/470 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ L R L G + F N L+ + S + DVL+SD+RMP MDG+ L Sbjct: 5 IVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGMEL 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 + ++K R P + VI++T ++ LD AV A ++GAF YL KPF D V +A+ + Sbjct: 65 MTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHLLSAR 124 Query: 126 QQPR------NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + R + GP IIG+ +++V IIG++ + +VLI G+SG+GKELVA Sbjct: 125 RSARPGAQGEDRNDAGPV--IIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S R+ PF+A N A+ + LI++ELFGHEKGAFTGA + G E A GGTLFLD Sbjct: 183 AIHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MP +Q +LLRVL +G+ RVGG PV VDVRI++AT +++ V EG FR+DL+ Sbjct: 243 EIGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYF 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R+NV+ + LP L ERREDIP LA H L R+ G + + + A L+ A+PGNVR+ Sbjct: 303 RINVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN + G+ + DLP +L E + PD LA Sbjct: 363 LENILERAVAICQGEIIRECDLPPDL---VALELQAYRPPDETFMTLA------------ 407 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ELER + L+ T G + A +LG R +L RK+K+ +E Sbjct: 408 --------ELERDYMAHLLKITGGARSRTAEILGIDRASLWRKMKKYDLE 449 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/486 (38%), Positives = 284/486 (58%), Gaps = 42/486 (8%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + +VDD+ L RAL T T NG E ++ D++L+D++MPGM Sbjct: 1 MNKKKILIVDDEIHTCQGLARALKYEWETFTA-SNGKEAIKIFEDNPVDIILTDVKMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ LL+Q+K P P I+M+A+++ + V A + GA+D++ KPF +D+ +++ A+ Sbjct: 60 NGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQ 119 Query: 121 HYQEQQQPR-----NVQL-----------NGPTTDIIGEAPAMQDVFRIIGRLSRSSISV 164 Q P + QL N P II ++ AM++V R + +++ + SV Sbjct: 120 ASPSFQLPSTKKATSAQLPAIAQTAKGSKNSP--QIIYQSVAMENVLRTVQQIAPARSSV 177 Query: 165 LINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIR 224 LI GE+GTGKE++A A+H S R+K FIA++ AA+ +L ESELFGHEKG+FTGAN R Sbjct: 178 LITGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKR 237 Query: 225 QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNL 284 GRFE ADGGTLFLDEIG++ Q +LLR+L F RVGG + D R+IAAT+++L Sbjct: 238 IGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDL 297 Query: 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET 344 + VQ G+FREDL++RL+VI + LPPLR+RREDIP L +H+L + E + K + Sbjct: 298 RKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADA 357 Query: 345 EAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELF--ESTVAESTSQMQPDSW 402 A L WPGNVR+L N + V++ + + + +LP + E ++E T++++ Sbjct: 358 MARLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSE-TAKIED--- 413 Query: 403 ATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRK 462 D+AL E E+ L+ AL+ + ++ AA LG R TL R+ Sbjct: 414 -------KDKALDVA----------ENEKVLILKALKESNNNRTLAAERLGMSRRTLHRR 456 Query: 463 LKELGM 468 LK+ G+ Sbjct: 457 LKQFGI 462 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 198/481 (41%), Positives = 274/481 (56%), Gaps = 18/481 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALAS-KTPDVLLSDIRMPGMDGLA 64 V VVDDD + R +++ L G E+G + + LAS DV+L D+ MPG+ G Sbjct: 5 VLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGISGQD 64 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L +++ R PVI++TA +D V A Q GA D+ KP + + + A+S Sbjct: 65 TLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALSMGAL 124 Query: 125 QQQPRNVQ--LNGPTT--DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + ++ +G TT D+IG +PAM V R+ R +RSSI +LI GESG GKE++A A Sbjct: 125 KGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEVIARA 184 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S RA PF+A+N AIP++L+ES LFGHEKG+FTGA G+F++A+GGTLFLDE Sbjct: 185 VHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGTLFLDE 244 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G++PLD+Q +LLR L + + +G VKVDVRI++AT+++L Q V EG+FREDL++R Sbjct: 245 VGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFREDLYYR 304 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV + P LRER+EDIP L F++ E G PET A LT WPGNVRQL Sbjct: 305 LNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPGNVRQL 364 Query: 361 ENTCRWLTVMAAGQEVLIQDLPG----------ELFESTVAESTSQMQPDSWATLLAQWA 410 EN V+A + D P L V S P S L A+ Sbjct: 365 ENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVP-SAGELAAELP 423 Query: 411 DRALRSGHQNLLSEAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +P E+ER L+ A+ GH E AR LG GR+TL RK++E G+ Sbjct: 424 QPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKVRENGL 483 Query: 469 E 469 E Sbjct: 484 E 484 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 197/479 (41%), Positives = 279/479 (58%), Gaps = 47/479 (9%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENG--AEVLEALASKTPDVLLSDIRMPGMDGL 63 + +++D+ R L AL G T+E + + L ++ D++L+DIR+ G Sbjct: 10 LLIIEDEKRTRMGLVMAL---GEEFDTYEASDLSSAMAILENEPIDIVLADIRLGKESGF 66 Query: 64 ALLKQIKQRHPMLP-VIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L+++K P P + MTA+ ++ AV A + GA+DY+PKP D+++ ++R Y Sbjct: 67 EILRKVKS-LPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLKRI---Y 122 Query: 123 QEQQ-QPRNVQLNGPTT------DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 Q ++ + N+QL IIG + AM+ VF I +++ S +VL+ GESGTGKE Sbjct: 123 QSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKE 182 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVAHA+H+ SPR PF+ ++ AA+ L+ESELFGHEKGAFTGA R GRFE+A GT Sbjct: 183 LVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGT 242 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ L Q +LLR L + RVG V VDVR+IAAT++NLE+ V+EGKFRE Sbjct: 243 LFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFRE 302 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF RLNV+R+ +PPLRER+EDIP LA+ FL A E G + L PE L WPG Sbjct: 303 DLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPG 362 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGE------LFESTVAESTSQMQPDSWATLLAQW 409 NVR+L+ V+ G+E+ +DLP L + ++ +S +PD + Sbjct: 363 NVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESS--EPDCF------- 413 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 NL E E+ L+ ALR QG K AA+ LG R TL RK+K+ + Sbjct: 414 ----------NL-----KEAEKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFEL 457 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 181/450 (40%), Positives = 269/450 (59%), Gaps = 19/450 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDDD+S+R VLE AL G T EN + L A+ + D++L D+R+ +G+ L Sbjct: 4 VLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGVDLVLLDVRLGQENGVDL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--SHYQ 123 L+ ++Q LPVI++TA++D +AV A + GA DY+ KPFD+ E + +VER++ S Q Sbjct: 64 LRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSLKTSRLQ 123 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 E+ + ++ G +IIGE+P MQ+VF ++ R++ + I++L+ GESGTGKELVA A+H Sbjct: 124 EENRWLKKEIQGRYGEIIGESPCMQEVFHLVERVAPTVINILVTGESGTGKELVARAIHA 183 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 SPR P + +N +P++L+ESELFG+ +GAFTGA+ ++G E AD GT FLDE+ + Sbjct: 184 QSPRRDNPLMVINCGGLPENLVESELFGYRRGAFTGADKPKKGLLELADSGTAFLDEVAE 243 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 + Q +LLR + D F +GG + + DVRIIAAT++ ++Q V +G FR+DL++RL+ Sbjct: 244 LAPSTQVKLLRCVQDKSFIPLGGASEITTDVRIIAATNRQVDQDVAQGHFRDDLYYRLSG 303 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 + +HLPPLR+R D+ LA HFL A RE L PE L R +PGNVR+LEN Sbjct: 304 MIIHLPPLRDRGSDVLLLAEHFLGRACREQKRSLLRLSPEARRKLQRYHFPGNVRELENI 363 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 + G + P L + E + P +L G +L Sbjct: 364 IERAVALEQGNTI----TPSSLI---IYEQDAAADPSGVNRVLG---------GELSLED 407 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLG 453 Q E E +L A+ T GHK +AA+L+G Sbjct: 408 HLQSE-EHKILKAAMDATGGHKSQAAQLVG 436 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 321 bits (823), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 197/491 (40%), Positives = 281/491 (57%), Gaps = 40/491 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ ++R L AL+ +G T ENG LE + + PD++++DIRMP MDG+ + Sbjct: 5 ILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDGIEM 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+QIK R P LPV+I+T ++ ++ AV A +QGA DY+ KPF ++ +++ + +Q Sbjct: 65 LQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVE----VIDETVRKVFKQ 120 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGR-------------LSRSSISVLINGESGT 172 +Q + T A D +IGR ++ S +VL+ GESGT Sbjct: 121 RQGEAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGT 180 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD 232 GKE+ A +H S R PF+ALN AA+P+ L+ESELFGHEKGAFTGA ++G+FEQA Sbjct: 181 GKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAH 240 Query: 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 GGTL LDEIG++PL +Q +LLRVL + + R+GG PVKVDV ++A T+++L V+EG Sbjct: 241 GGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGN 300 Query: 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 FREDLF+RLNVI + LP +RER EDI LA HF++ AK L + Sbjct: 301 FREDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEYQ 360 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQD-----LP--GELFESTVAESTSQMQPDSWATL 405 WPGNVR+LEN +++AG E+ D LP G + +T E P+ A Sbjct: 361 WPGNVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAA- 419 Query: 406 LAQWADRALRSGHQNLLSEAQP-----------ELERTLLTTALRHTQGHKQEAARLLGW 454 AD AL + + + A ++ER ++ ALR T ++ AA++LG Sbjct: 420 ----ADLALAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGI 475 Query: 455 GRNTLTRKLKE 465 TL KL E Sbjct: 476 SVRTLRNKLNE 486 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 321 bits (822), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 179/471 (38%), Positives = 270/471 (57%), Gaps = 30/471 (6%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 +V + +DD +R ++ L G T E+ E L+ + + V+++D+RMP +DG+ Sbjct: 6 VVVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPRIDGMK 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY-- 122 +L +Q++P+ VI+MT H+ +++AV + + GAFDY+ KPF+ E VERA+SH+ Sbjct: 66 VLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERALSHWNL 125 Query: 123 -QEQQQPRNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +E + R D IIG + AM +V R+I + SVLI GESGTGKELVA Sbjct: 126 SRENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELVARQ 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H SPR F+A+N AAIP+ +IESELFG++KGAFTGA + G FE A+GGT+FLDE Sbjct: 186 IHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGTIFLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 + + L +Q +LLRVL D FYR+G P V+VR++AAT++++ + + FREDL++R Sbjct: 246 VNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFREDLYYR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L VI +H+P LR+RR+D+P LA +F+ A+ + + AL R WPGNVR+L Sbjct: 306 LRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPGNVREL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFEST--VAESTSQMQPDSWATLLAQWADRALRSGH 418 EN + ++ G+ + LP E+ T + MQP + Sbjct: 366 ENVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLE--------------- 410 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+E + LR T G + A +LG ++TL RK+K +E Sbjct: 411 ---------EVEVYFIRKTLRETNGDRALCAEILGIDKSTLWRKIKRYSIE 452 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 321 bits (822), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 185/466 (39%), Positives = 273/466 (58%), Gaps = 29/466 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VV+DD ++R VL+ L AG +E + + D++++D+RMP +DG L Sbjct: 21 VLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDLDGFDL 80 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAV-----ALVERAIS 120 ++ I P+I++TA +D A+ A + GA DY+ KPF+IDE V AL ERA+ Sbjct: 81 IRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALAERALR 140 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ Q R V+ +II + M+++ ++ R++ S+ SVL+ GESGTGKELVA A Sbjct: 141 RRVDRLQ-REVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELVARA 199 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +SPRA+ F+A+N+AA+P+ L+ESELFGH KGAFT A + G F +ADGGT+FLDE Sbjct: 200 IHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIFLDE 259 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 I +M +Q +LLR L + + VG P +VDVR++AAT+++L++R+ EG FREDL++R Sbjct: 260 IAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDLYYR 319 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL-LHPETEAALTRLAWPGNVRQ 359 LNVI++ LPPLR R +DI LA HFL +A+ L + L ET+ L WPGNVR+ Sbjct: 320 LNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPGNVRE 379 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + G + +DLP + E + D + +A+ + A Sbjct: 380 LANVIERGLTLCRGDLIAPEDLPNHVRE--------RKSNDFLSAAVARRMNLA------ 425 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 +LER + L+ G+K A+ LG R TL RKL E Sbjct: 426 --------QLEREFIERILKEEGGNKTRTAQRLGLDRKTLYRKLDE 463 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 321 bits (822), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 190/469 (40%), Positives = 271/469 (57%), Gaps = 23/469 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ IR + L AG + G L A +K D++ DI +PG+DGL + Sbjct: 16 ILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLTM 75 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L + +R VI++TA ++ AV + GA DYL KPF DE + RA+S + Sbjct: 76 LPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAMR 135 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 ++ ++ +++G++PAM + + + +++ + I+VL+ GESGTGKELVA ALH Sbjct: 136 RENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQG 195 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 RA F+ +N A+ L+ESELFGH +GAFTGA ++G F ADGGTLFLDEIG++P Sbjct: 196 ARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGELP 255 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LLR L DG+ VGG P +VDVR++AAT+++L++ V +G FREDLF+RLNVI Sbjct: 256 LALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVIT 315 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +P LRERRED+P LA+HF AAR + P L WPGNVRQLEN Sbjct: 316 IEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAIE 375 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ-----N 420 V+AAG + I+D QP + LA + R+G + + Sbjct: 376 RAVVLAAGNTLGIEDF----------------QPRAGVAGLAAESAPGRRTGGRGDSADD 419 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LLS ELER + L G K +A+ +LG R TL +KL++ G+E Sbjct: 420 LLS--LDELERLHILRVLEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 321 bits (822), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 286/471 (60%), Gaps = 17/471 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAG-AGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 G + +VDD+ + +L R L+ T+ ++ +V E L D++++D+RMPG DG Sbjct: 3 GKILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRDG 62 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +++ +KQ++P VIIMTA+ +++A+ A ++GAFDY+ KPF + + +V++A+ Sbjct: 63 LGVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKWQ 122 Query: 123 QEQQQPRNVQ--LNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q Q++ ++ L G + +IG + AM+ + I R++++S +VLI GESGTGKELVA Sbjct: 123 QLQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELVA 182 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 LH+HS R FI LN + +P+ +IESELFGH +G+FTGA ++G E+A+ GTLFL Sbjct: 183 RELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTLFL 242 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ + +Q +LLR+L +G++ +G +VD+R IAAT+QNL ++++ G+FREDLF Sbjct: 243 DEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFREDLF 302 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +PPLRER +DIP L FL+ K + P T AL + WPGNVR Sbjct: 303 YRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGNVR 362 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LENT +MA+G + +D+ E+ +E+ + D ++ + D+ + Sbjct: 363 ELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLIE--- 419 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E + ++ AL G+ +AAR G R L R ++E ++ Sbjct: 420 ---------EFQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRETNVD 461 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 321 bits (822), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 185/472 (39%), Positives = 271/472 (57%), Gaps = 24/472 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + G + +VDD+ R +L+ L G E LE L + D++L+D++M G Sbjct: 6 KSGSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQS 65 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL+++ P VI+MTAH +D+AV A + GAFDYL KP + D V ++RA Sbjct: 66 GLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFER 125 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ R +Q P ++G+ P M +VFR++ +++ ++ +VLI GESGTGKELV Sbjct: 126 IGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELV 185 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S R PF+A+N AAIP+ LIESELFGHEKG+FTGA+ G FE A+GGT+F Sbjct: 186 ARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVF 245 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+M + +Q +LLR + + + RVGG + +DVRII+AT++ LEQ ++ G FREDL Sbjct: 246 LDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDL 305 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVIR++LPPLRER D+ LA F++ + G++ + + L +WPGNV Sbjct: 306 YYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGNV 365 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLE+ +MA + DLP E+ STS + L + D Sbjct: 366 RQLESVIERAVLMAESSVIEPGDLPAEI------TSTSLLAGVVPFDLPPEGID------ 413 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LE+ L+ A+ +AA LLG TL +L++ +E Sbjct: 414 --------METLEKNLIIKAMERADWVIGKAAPLLGMSYKTLQYRLEKFAIE 457 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 320 bits (821), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 169/368 (45%), Positives = 242/368 (65%), Gaps = 8/368 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG- 59 M R + VVDD+ R VL AL G T +G E L + +++ D+++PG Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGS 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DGL LL++ K+ + ++IMTA+ +D AV A ++GAF+Y+ KPF IDE + +ER I Sbjct: 61 IDGLELLQRAKEMNNA-SILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMI 119 Query: 120 SHYQ--EQQQPRNVQLN---GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + E+ + +L G T IIG + +Q V +I R++ SS +VLI GESGTGK Sbjct: 120 EQNKIIEENNYLHSELEKAFGRKT-IIGNSKEIQKVMDMISRVAFSSATVLITGESGTGK 178 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+H + R F+ +N A + + L+ESELFGH +GAFTGA ++G FE+ADGG Sbjct: 179 ELVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGG 238 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLF+DEIGD+P VQ ++LRVL +G+F +G VDVRIIAAT+Q+L ++V++ +FR Sbjct: 239 TLFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFR 298 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RLNVI + +PPLRER+EDIP L +HF++ ++ + K L PETE L + WP Sbjct: 299 EDLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWP 358 Query: 355 GNVRQLEN 362 GNVR+LEN Sbjct: 359 GNVRELEN 366 >UniRef50_D2MI41 Transcriptional regulatory protein ZraR n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI41_9BACT Length = 464 Score = 320 bits (821), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 183/473 (38%), Positives = 275/473 (58%), Gaps = 24/473 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 ++V DDD +R + R LA +G +F++G +LE L PD++L D++M GM G+ Sbjct: 5 IFVTDDDEVVRASITRRLARSGHDVRSFDSGEALLEELDHDVPDIILLDLKMSGMTGIET 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH---- 121 LK I+ + P VI++TA+ ++ AV A + GA+D+L K D+ +VERA+ + Sbjct: 65 LKHIRPKAPQTLVILLTAYGTIEDAVEAMRLGAYDFLIKSVDLSGVGPVVERALDYLTLR 124 Query: 122 ----YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSS-ISVLINGESGTGKEL 176 ++ Q L D+I ++P M+++ + LS ++ +VL+ GE+GTGKE Sbjct: 125 RRVSFENQGSAGRYALK----DLIADSPGMRELVVQVQELSENAKTTVLLQGETGTGKEF 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A LH + PR +APF+ +N AIP++L ESELFG+E+GAFTGA + G EQA+GGTL Sbjct: 181 IARVLHHNGPRGEAPFVGVNCTAIPQELFESELFGYERGAFTGAARRKPGLCEQAEGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGD+ +Q +LLRVL + F R+GG + VD R+IAAT+++L++ V +G FRED Sbjct: 241 FLDEIGDLNPSMQAKLLRVLQERSFKRLGGQDDITVDFRLIAATNRDLKKEVSQGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF RLNV+ + LPPLR+R EDI L+ L +R++ + ++PE A L R A+PGN Sbjct: 301 LFFRLNVVSLELPPLRQRVEDIYPLSLRCLVHHSRDINKDIGEINPEARALLERYAYPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+LEN + G+ + DLP EL E T +S + D L Sbjct: 361 IRELENIVERAVIFCRGKTLTPGDLPRELHEETKPVVSSTISTDEPVLKLEMVL------ 414 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 G Q L E E ++ ++ +K AA+ LG R L R+LK+ E Sbjct: 415 GRQTL-----AETESAIIEEVMKLCGQNKSLAAQKLGLTRFALDRRLKKXADE 462 >UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI58_9BACT Length = 473 Score = 320 bits (820), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 172/464 (37%), Positives = 282/464 (60%), Gaps = 7/464 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +++DD S+ + +AL +G ++A + D++++D+RMPG DGL + Sbjct: 8 ILLIEDDKSLGESVSKALRSTNYGVDLVGDGISGIKAAQNNRYDLIITDMRMPGADGLDV 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++ + + P+I+ TA+S + A+ A + GA++YL KP DI+ + +E+A+ + Sbjct: 68 IEALGPQLQQTPIILTTAYSTPEKAIEATRLGAYEYLTKPLDIEVLIQSIEKALEAARAS 127 Query: 126 QQPRNVQLNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 PT +IG + AM +V++ IGR + ++ +VLI GE+G GKELVA+ALH+ Sbjct: 128 SNETMGSEALPTEPQTLIGSSSAMHEVYKSIGRNADNAATVLIAGETGVGKELVANALHK 187 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S R + PF+A+N AA+P++L+ESELFG+EKGAFTGA+T + G FEQ+ GTLFLDEIGD Sbjct: 188 FSKRKEEPFVAINCAALPENLLESELFGYEKGAFTGADTNKAGCFEQSAAGTLFLDEIGD 247 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 PL +Q +LLRVL + + R+G + +V +I+AATH+NL V++ FREDLF+R+NV Sbjct: 248 APLSIQVKLLRVLQEKKVRRIGSHKEREVHCKIVAATHKNLLSMVEQKTFREDLFYRINV 307 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 ++ +PPLR RR DI L + L E G+ + + E L R WPGNVRQL+NT Sbjct: 308 AQISIPPLRHRRGDIVELCKSLLFKRGHEQGITSPSISKEALQLLRRYNWPGNVRQLDNT 367 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQ-MQPDSWATLLAQWADRALRSGHQNLL 422 L + + G + ++L +L + E SQ +S + +++++ D + + + Sbjct: 368 ISKLLIRSKGY-AITKELVEQLLRN---EEISQPKNSESLSQIVSKFLDTSEKDQKGDAY 423 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +++ L++ AL ++G+ +A+R LG R TL +K+ +L Sbjct: 424 DSIIEAVDKELISQALARSEGNLAQASRWLGLSRLTLRKKISKL 467 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 187/473 (39%), Positives = 279/473 (58%), Gaps = 41/473 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +V+DD++ R +L L G E+G L+ L ++ D++LSD+R+PG++GL L Sbjct: 7 ILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPGLNGLEL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE----------AVALV 115 ++ + P +++TA ++ AV+A ++G D+L KP AV++ Sbjct: 67 FRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRRTLAVSMQ 126 Query: 116 ERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 ER++ QE+ P +++ AMQ V +I ++ + +VLI+GESGTGKE Sbjct: 127 ERSLQVLQERDTA-----GLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTGKE 181 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A +HR SPR APF+ALN AAIP+ L+ESELFGHEKGAFTGA RQG+FE A GGT Sbjct: 182 LAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASGGT 241 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++PL +Q++ LRVL + F RVGG ++ DVRIIAAT+++LE+ V+ +FRE Sbjct: 242 LFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRFRE 301 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RL+V +HLP LR+RR+ +P L R+ L+ AA + G E + + + AA+ WPG Sbjct: 302 DLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGWPG 361 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L+N ++ GQ L+ DLPG + + T S + P S +L DR Sbjct: 362 NIRELQNVIERAVILCKGQVTLL-DLPGGVRQVT----ASGVIPKSNGSL----RDR--- 409 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ER + AL +++ AA LG + TL +LKE G+ Sbjct: 410 --------------ERNDILDALATCGNNRRLAAEKLGISKRTLQYRLKEYGL 448 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 187/472 (39%), Positives = 274/472 (58%), Gaps = 38/472 (8%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +VDD SIR + G C+ E+ L AL +++PD++L+D+RM + G+ L Sbjct: 11 IVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRMGELSGIDFLA 70 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER--------AI 119 +K+ P V IMT + ++ AV + + GA+DY+ KPF ++E +++R A Sbjct: 71 SVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQRMAEKVRLVAE 130 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +H+ ++ ++L+G I+G + +QDV R++GRL + VLI GESGTGKELVA Sbjct: 131 NHFLRERVNTEMELHG----IVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKELVAR 186 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H AK PF+A++ ++ LIESELFGHEKGAFTGA ++G F+ A+GGT+FLD Sbjct: 187 AMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANGGTIFLD 246 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++PLD+Q +LLRVL D Q VG VKVDVR+IAAT+++LE + G FR+DL+ Sbjct: 247 EIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTFRKDLYF 306 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQ--VAARELGVEAKLLHPETEAALTRLAWPGNV 357 RLNV+ V+LP LRER+ DIP L +HF+ A RE GVE + + +L + WPGNV Sbjct: 307 RLNVVTVYLPSLRERKSDIPSLIQHFIDRPSAGRE-GVE---VTSQAMKSLMQYDWPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN + G+ + + DLP S M P A +++ D Sbjct: 363 RELENCIERAVALGNGEVIDVDDLP---------PSLQAMAPKKNAPAVSEGYD------ 407 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 S ++ERT + G K A ++LG R TL RK+K ++ Sbjct: 408 -----STDLEDIERTTIQRVFDQVGGDKGLALKMLGISRATLYRKIKRYNID 454 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 187/467 (40%), Positives = 265/467 (56%), Gaps = 29/467 (6%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + VDDD I VLE L AG T +GAE LE LA + +++SDIRMPGMDG Sbjct: 8 RKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGMDG 67 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL+++++R LP+I +TAH + AV A + GA DYL KPFD E + V + Sbjct: 68 MRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFARA 127 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 R L + ++G++ AM+D+ +I R++ ++VL+ GESGTGKELVA+ +H Sbjct: 128 AGNDATRERDLG--ESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLIH 185 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 R SPR P + ++ + P L+ESELFGH KG+FT A ++G EQA+ GTLFLDEIG Sbjct: 186 RRSPRKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEIG 245 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++ ++Q RLLR L + + R+G ++VD R+IAAT+ ++ ++V EG FREDL +RL Sbjct: 246 NISTEMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRLK 305 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ +++PPLRERREDIP LA HF + G+ + ET A L WPGNVRQL N Sbjct: 306 VVTINVPPLRERREDIPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQLRN 365 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V+ G + +DL L + DRA G L Sbjct: 366 ALEAGVVLCTGGVLAPKDL--------------------QLPLAGKGPDRA---GESLSL 402 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+ E+T + AL ++ AA LLG R L K+++ G+E Sbjct: 403 DES----EKTAIVRALEQANWVQKAAAPLLGVSRRALNYKIQKYGIE 445 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 167/382 (43%), Positives = 233/382 (60%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +V+D +S+ + L + G + +E+L +TPD++L D+R+P M G+ +L Sbjct: 15 MVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLY 74 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 +K+++P +PV+ MTAH +D AV A + GA D+L KP + D V A+ + + Sbjct: 75 AVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKASKLKN 134 Query: 128 PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187 + N IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S R Sbjct: 135 EADYPGNQGYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHATSKR 194 Query: 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD 247 PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M LD Sbjct: 195 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD 254 Query: 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 +QT+LLR + G F +VG VDVR + AT+++ + V+EG+FREDL++RL VI +H Sbjct: 255 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYYRLYVIPLH 314 Query: 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWL 367 LPPLRER +DI +A L ++E G + L P+ WPGNVRQL+N R + Sbjct: 315 LPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQLQNVLRNV 374 Query: 368 TVMAAGQEVLIQDLPGELFEST 389 V+ G+E+ + LP L + T Sbjct: 375 VVLNNGKEIDLSMLPPPLNKPT 396 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 280/466 (60%), Gaps = 28/466 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLT--CTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DD+ SI L+ AL T T + G ++E + DV+L D+++ +DGL Sbjct: 4 ILIIDDEPSICSSLQFALEDDYETEATTEVDKGLHIIE---QEPIDVVLLDLKIGKVDGL 60 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L++IK++ P VI++TA+ + +V A + GA+ YL KP ++E +++E+A+ + + Sbjct: 61 EVLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYKK 120 Query: 124 EQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +Q + ++ +IG++ AM VF +I ++ SVLI GESGTGKELVA Sbjct: 121 LNEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H R + F +N AAIP+ L+ESELFG+EKGAFTGA T ++G+F+ A+ GT+FLD Sbjct: 181 AIHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPL +Q +LLRVL + ++G K+DVR+IAAT+++L+++V+EG FREDL+ Sbjct: 241 EIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYF 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL+VI +HLPPLRER+ED+P L +HFL +ELG K + + L +PGN+R+ Sbjct: 301 RLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N V+A G+ + ++DLP +F E ++ + L + R L+ Sbjct: 361 LSNIVESSMVIADGEYIELEDLP--MFIREKGEGFAKQKGS-----LDDYIGRPLK---- 409 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 ELE+ + L+H H+++ A +LG L KLK+ Sbjct: 410 --------ELEKDFILATLKHNDNHRKKTAEMLGISERGLRDKLKQ 447 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 180/467 (38%), Positives = 269/467 (57%), Gaps = 12/467 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ IR+ L L G E G E L+ PD++ DI +PGMDGL + Sbjct: 5 VLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDGLEV 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 L ++ LPVI+++ H +++ AV+A ++GA+D++ KP +++ V +A+ +Y+ Sbjct: 65 LDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYYRLR 124 Query: 124 -EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 E Q R+ T ++ G + ++ ++ IGR++ + VLI GE+GTGKE+ A ++H Sbjct: 125 RENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAARSIH 184 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R P +A+N AAIP++LIESELFGHEKGAFTGA T + G+FE A GTLFLDEI Sbjct: 185 ASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFLDEIA 244 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DM L Q ++LR+L + F RVGG+ VKVDVR+IAAT+++LE + G+FREDL++RL Sbjct: 245 DMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLYYRLR 304 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 VI + +PPLR+R +D+ L F+ E G P+ +AL WPGNVR+L+N Sbjct: 305 VIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVRELKN 364 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + +M +GQ V LP E A + QP + A +D + G + Sbjct: 365 FVERMLIMHSGQTVTAAMLPPEY---RCAGAGIMPQPCT-----AGPSDGMIPEGVMDFK 416 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + A+ E L L+ G+ A +G R+ L RKLK ++ Sbjct: 417 A-ARTAFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNIQ 462 >UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator n=9 Tax=Cystobacterineae RepID=Q1D5T0_MYXXD Length = 477 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 193/475 (40%), Positives = 279/475 (58%), Gaps = 28/475 (5%) Query: 6 VWVVDDDSSIRWVLERALAG-AGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VVDDD+ +R+ L L +G+ +G + LE L+++ ++++SD+RMP MDG+ Sbjct: 13 VLVVDDDAGVRFTLREMLKSLSGVEVDEAVDGEDALEKLSARPYELVISDLRMPRMDGME 72 Query: 65 LLKQIK--QRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L++++ R P VI++TAH AV A + GA+DY KPFD+DE +A+V RA+ Sbjct: 73 LVRRLSLFSRSPR--VIVITAHGSERFAVEAMKAGAYDYFRKPFDVDELLAVVSRALESV 130 Query: 123 QEQQQPRNVQLNGP---TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +++ N +L+G + ++ + M + +++ R ++VLI GESGTGKE VA Sbjct: 131 RLREE--NARLSGELNLSRSLVFVSEPMARLAQLVQRAGSRDVTVLITGESGTGKERVAD 188 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 AL R SPRA PF+ N AA+ ++L E+ELFGH +GAFTGA+ R G F +ADGGTL LD Sbjct: 189 ALVRASPRANRPFLRFNCAALTEELAEAELFGHARGAFTGAHRARPGLFREADGGTLLLD 248 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+G++ +Q RLLRVL +G+ VG PV VDVRIIAATH++L + EG FREDL++ Sbjct: 249 EVGELAPTLQARLLRVLQEGEVRPVGEDRPVTVDVRIIAATHRDLRRLALEGAFREDLYY 308 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+++ +PPLRER EDIP LAR FL + L L WPGNVR+ Sbjct: 309 RLNVVQLRVPPLRERPEDIPVLARVFLDRFIDRFHTGPLKIPDGFFEQLRALPWPGNVRE 368 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LENT L +++ + + LP +P + + +R G Q Sbjct: 369 LENTLESLVALSSEGRLDLGQLP-------------SAEPAGADSGFPGASSDPVRPGPQ 415 Query: 420 N-----LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + L E ER L+ ALR G++ EAAR LG GR TL KL++ G++ Sbjct: 416 DGAPGAGLKERVEAYERGLVLDALRIAGGNRSEAARRLGIGRATLHDKLRKYGLD 470 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 191/472 (40%), Positives = 270/472 (57%), Gaps = 27/472 (5%) Query: 4 GIVWVVDDDSSIRWVLERALA--GAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 G + VVDD+ S+R L+ L G G+ C +G L L + D+L+SDIRMP + Sbjct: 2 GRILVVDDELSMREFLKILLEEEGHGVCCAG--DGEAALARLRQEDFDLLISDIRMPPPN 59 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL Q +Q P LPV+++TA + D AV A + GAFDYL KPF +DE +V A+S Sbjct: 60 GLELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSS 119 Query: 122 YQEQQQP-----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 ++ +P V NG IIG +P M ++ +I R++ + +VLI+GESGTGKEL Sbjct: 120 RRQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKEL 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H+ SP + F+ + +AIP+ L ESELFGH KGAFTGA T R G FEQA+ GT Sbjct: 180 VARAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTA 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++ QT+LLRVL + + RVG ++++ R+I+AT+++LE+ V G+FRED Sbjct: 240 FLDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RL V+ + +PPLRER+ D+P L HFL +R G + + + L +PGN Sbjct: 300 LFYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP---DSWATLLAQWADRA 413 VR+LEN M Q +L + L T+ QP D +L A +R Sbjct: 360 VRELENIIERGVAMENSQIILPESL-------TLTGRRHGGQPAPADDRGSLEADVFNRG 412 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 L A + ER ++ AL+ K AA LL +L K+K+ Sbjct: 413 LEP--------ALTDFERQMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKK 456 >UniRef50_D2L101 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L101_9DELT Length = 466 Score = 317 bits (813), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 198/473 (41%), Positives = 267/473 (56%), Gaps = 29/473 (6%) Query: 6 VWVVDDDSSIRWVLERALAG--AGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V +VDD L R LA G + + +G L L VL++D+RMPG+ GL Sbjct: 7 VLIVDDQPDFAKGLARLLAPRLPGASLSYVLSGEAALADLERAPCAVLVTDLRMPGLSGL 66 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALV----ERAI 119 LL + P L V+++TAH D+D AV+A + GA+D+L KP D + ++ ERA Sbjct: 67 DLLPRALALAPGLGVVLLTAHGDIDTAVAALKAGAYDFLTKPVDSEHLSRVIAKGLERAA 126 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + V+ G ++G +PAM V I ++ S +VLI GESGTGKEL A Sbjct: 127 LLTENIRLRAAVKACGADVGLLGRSPAMVQVTEAIAAVAGSDYTVLIRGESGTGKELAAR 186 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S RA PF+++N AIP L+ESELFGH +GAFTGA R+G F A+GG + LD Sbjct: 187 AVHALSRRAAGPFLSVNCPAIPDQLLESELFGHVRGAFTGAERDRRGLFLSAEGGVIVLD 246 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGD+P+ VQT+LLRVL + + VG + VDVRI+AAT+Q+LE R+ + FREDL++ Sbjct: 247 EIGDIPMSVQTKLLRVLQEREIRPVGSSRSLPVDVRILAATNQDLEARIADKTFREDLYY 306 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ V LPPLRERR+DIP LA FL+ A RE G+ K PE A L WPGNVR+ Sbjct: 307 RLNVLTVRLPPLRERRDDIPLLATAFLERACRETGIGEKEFSPEALAGLAGRDWPGNVRE 366 Query: 360 LENTCRWLTVMAAGQEVLIQDL----PGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 L N R LTV G + L PG + AE+ P + A+ D R Sbjct: 367 LLNFVRRLTVFCRGDVIGPSALQAADPG---HNEPAETDDADLPAPYLEAKARVVDAFTR 423 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + LLS+ T+G+ EAARL G R +L + L+ LG+ Sbjct: 424 RYVERLLSQ----------------TRGNVSEAARLSGLERVSLQKILRRLGI 460 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 182/468 (38%), Positives = 273/468 (58%), Gaps = 28/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VV+DDS++R +L+ LA +G +G + L + +V+L D++MPG+DG+ Sbjct: 12 VLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKMPGVDGIET 71 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+Q++ + +I+ T H ++ AV + GA+DYL KP +DE ++++A + + Sbjct: 72 LRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDKAYEKNRLR 131 Query: 126 QQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + N++L D ++G +PA+ V ++ R + VLI GESGTGKEL++ A+H Sbjct: 132 LENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGKELISRAVH 191 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 SPRA+ PF+ +N + + ESELFGH +GAFTGAN R G FE AD GTLF+DE+ Sbjct: 192 DASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTGTLFMDEVS 251 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 + PLDVQ +LLRVL G F R+GG + VDVR + A+++NL++ V G+FREDL+HR+N Sbjct: 252 ETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFREDLYHRIN 311 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAA-RELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 ++ ++LPPLRER EDI LA F++ AA RE E + E AALT +WPGNVR+L Sbjct: 312 LLPINLPPLRERPEDILPLAYFFMKSAAGRE--DENWEITEEAMAALTAYSWPGNVRELR 369 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 NT R ++A Q++ + LP F Q+ P + T L W Sbjct: 370 NTIRRACILATDQQITSELLP---FSPPRVLPPRQVSP-AAPTQLPLWV----------- 414 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER + L +G+K AA++L R TL KL+ G++ Sbjct: 415 -------VERDHIERVLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 186/473 (39%), Positives = 279/473 (58%), Gaps = 29/473 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + + DD ++R + AL+ G GAE + A K DV+++D+RM +DG+ + Sbjct: 31 ILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVPVDGIEV 90 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++++++ P V++++AH + AV A ++GA D++ KPF D A VE++I +E+ Sbjct: 91 VRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEIARER 150 Query: 126 QQPRNVQLNGPTTD----------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + R + + ++G + M+ V + +++ + +VL+ GESGTGKE Sbjct: 151 KGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKE 210 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H SPR + PF++++ AAIP+ L+ESELFGHEKGAFTGA + GRFE A+GGT Sbjct: 211 LVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGT 270 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDE+G++P VQ +LLRVL + QF RVGG V+VDVR+++AT++NL Q V+ G+FRE Sbjct: 271 LFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFRE 330 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ + LPPLR+R D+ LAR F+ A + L PE L R WPG Sbjct: 331 DLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPG 390 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN V A G+ V +DLP E + P +L DR+ Sbjct: 391 NVRELENVIEQALVFAEGELVRPRDLP---------EGVRKAPP--APSLPVPSGDRS-- 437 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L++ +LER L+ A +G K E ARLLG + L KL++ G+ Sbjct: 438 ------LTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 317 bits (812), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 182/475 (38%), Positives = 273/475 (57%), Gaps = 32/475 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + +V+DD + L L+ G + ++G + LE + D+++SD+++PGM Sbjct: 1 MGKYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI- 119 DG+ +LK IKQ + +I+TA+ +D AVSA +QGA DY+ KPFD++E +VE+ + Sbjct: 61 DGMEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLE 120 Query: 120 ------SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 + + QQQ ++ +I+G + +M VF+ I R+ S +VLI GE+GTG Sbjct: 121 KRGLFLDNLRLQQQ---LEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTG 177 Query: 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 KELVA A+H +S RA P++ +N AA+ +DL+ SELFGH KGAFTGA ++G FE ADG Sbjct: 178 KELVARAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADG 237 Query: 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 GTLFLDEIGD+ +Q LR L G+ VG + V VRIIAAT++NLE V++G F Sbjct: 238 GTLFLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGF 297 Query: 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 R+DL++RLNV+ + LPPLR+R+EDI LA HFL A + + + P L +W Sbjct: 298 RKDLYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSW 357 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 PGNVR+LEN T+ QE+ LP V E + + P ++ Sbjct: 358 PGNVRELENIIERATLFELTQEITPDSLP-----QVVIEPCTVLDPSPFS---------- 402 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + + + R + L T +K +A++LLG R+TL R + L + Sbjct: 403 -------METTSLEAVSRRHIVRILEMTNHNKTQASKLLGIDRSTLWRIMNRLKL 450 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 317 bits (812), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 189/468 (40%), Positives = 267/468 (57%), Gaps = 24/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +V+D+ S+R ++ AL+ AG + AL + D++++D+R+PGM G+ L Sbjct: 6 ILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMSGMEL 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L I++ HP VI++TA +++ AV A + GAFD+L KPF D + VER + Sbjct: 66 LDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRFLDLK 125 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 ++ ++ + IGE+PAM VF I L+ + + VL+ G SG+GKELVA ALHR S Sbjct: 126 RENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGALHRRS 185 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PFI +N AA+P+ L+ESELFGHEKGAFTGA R G+FE ADGGTLF DE+G+MP Sbjct: 186 KRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDEVGEMP 245 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LLRVL D + VGG P KV+VR + AT +NLE+ + +G+FREDL++R+NV+ Sbjct: 246 LPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYRINVVP 305 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 V LPPLRER D+ L FL+ L L + AL +PGNVR+L N Sbjct: 306 VTLPPLRERGSDVALLTERFLRRFC-ALHERQATLSEQARLALLAYDYPGNVRELRNAVE 364 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP----DSWATLLAQWADRALRSGHQNL 421 ++ E+ + LP + +T M P D+ T + Sbjct: 365 HAVLLCTEGEIHVGHLP-----ERIRAATQSMPPACDDDAGDTPAS-------------- 405 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L+E ER + AL T G K +AA LLG R L KLKEL ++ Sbjct: 406 LAEGVARFERRRIMEALERTGGRKIQAADLLGISRKQLWLKLKELSID 453 >UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC3_9BACT Length = 464 Score = 317 bits (811), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 173/472 (36%), Positives = 279/472 (59%), Gaps = 14/472 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGL-TCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M++ V VVDD+ +I W+L+ L+ + TT E + E +K D+ L DI + Sbjct: 1 MRKIRVLVVDDEENILWLLKEGLSDEKIDVLTTTE--PNMAENYLAKGVDICLVDIFLGE 58 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +G++L ++ IIMTA + + + GA D+ KPFD+ E L + I Sbjct: 59 YNGISLTEKWSNLFKETHFIIMTAQDTGSNVIESIKSGAKDFFSKPFDLLE---LKNKVI 115 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 S P++ + D + M +++++IG++S+++I+VLI GESGTGKE++A Sbjct: 116 SLCG--NIPQSTISDSKEYDFETKNKKMLEIYKLIGKISKTNINVLILGESGTGKEVIAR 173 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H+ S R++ PF+ +NMAAIP +L+ESELFGHE+G+FTGA ++G+FE+A+ GT+FLD Sbjct: 174 MIHKQSARSERPFVPINMAAIPNELLESELFGHERGSFTGAIGDKKGKFEEANHGTIFLD 233 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI +M + +Q++LLRV+ + + ++G +K+D RIIAA+++NLE+ V GKFREDL++ Sbjct: 234 EISEMDMGLQSKLLRVIQEKEVTKIGSNKTLKLDTRIIAASNRNLEELVSTGKFREDLYY 293 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA--ALTRLAWPGNV 357 RLNV+ + LPPL ER+ED L HFL + ++ K+L EA A+T WPGN+ Sbjct: 294 RLNVVSIELPPLYERKEDTAYLTNHFLH---KHQSIKDKVLTCSEEALDAMTAYRWPGNI 350 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN+ ++ V A + +++LP ++FE S D + L L G Sbjct: 351 RELENSIQYAIVNAETDVIKLENLPPKIFEQGTGSGKSSTSHDLYKLALNIIESEILSEG 410 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + N E +E ++ + T +K +A++LG RNT +K++E G E Sbjct: 411 N-NAYDEFMKIVEYPIIKAVMDKTGNNKSVSAKILGINRNTFRKKVREHGFE 461 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 317 bits (811), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 178/465 (38%), Positives = 276/465 (59%), Gaps = 15/465 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDD+ R L++AL + + + E + ++ DV+++D+RMPG GL + Sbjct: 5 VLIVDDEKHTREGLQQALVDS-YDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGLKV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS----H 121 + + + V++MTA+ +++ AV A ++GA D+L KP +I+ L++RA+ Sbjct: 64 IDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKAKTLE 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + +Q + IIG +P + +V + ++ S ++LI GESGTGKEL+A A+ Sbjct: 124 VEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIAQAI 183 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+ S R++ PF+A++ AA+ ++L+ESELFGHE+G+FTGA R GRFE ADGGTLFLDEI Sbjct: 184 HQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFLDEI 243 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++ Q +LLR L RVGG P+ +DVR++AAT++ LEQ V++GKFREDLF RL Sbjct: 244 GEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFFRL 303 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+R+ +PPLRER ED+P L H++ + E GV + P A L WPGN+R+L Sbjct: 304 NVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNIRELR 363 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQM-QPDSWATLLAQWADRALRSGHQN 420 N C V+ G+ + DL ++T+A +T P + + + A S +N Sbjct: 364 NFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGSTVLGGAVPTSFSVEEN 423 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E+ LL AL ++G++ +AA L+G R TL RK+ + Sbjct: 424 ---------EKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQ 459 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 317 bits (811), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 185/474 (39%), Positives = 276/474 (58%), Gaps = 15/474 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLE--ALASKTPDVLLSDIRMPGMDGL 63 V +VDDD + R +++ A+ G E+G LE + A V+L D+ MPG+ G+ Sbjct: 10 VLIVDDDPTQRRLMQAAVERQGFRARLVESGDLALEEASDAKNGISVVLLDLIMPGLSGM 69 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L+++ +R P LPVI++TA +D V A + GA D+ KP + V + A+ Sbjct: 70 ETLERLLERRPDLPVIVLTASGGIDTVVQAMRAGAVDFFVKPASPERIVVSLRNALKVSD 129 Query: 124 EQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + T D+I AP M+ V R+ R ++S+I +LI GESG GKE+ + Sbjct: 130 LRGEVKRLSKKSEGTLGFDDMIAGAPLMRQVVRLGQRAAKSNIPILITGESGVGKEVASQ 189 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 + S RA PFI +N AIP++L+ES LFGHEKGAFTGA+ + G+F +ADGGTLFLD Sbjct: 190 CIQSASERAGKPFITVNCGAIPENLVESILFGHEKGAFTGAHEKKLGKFAEADGGTLFLD 249 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+G++PLD+Q +LLRVL +G+ VG P KVDVRII+AT+++L Q V EG+FREDL++ Sbjct: 250 EVGELPLDMQVKLLRVLQEGEVDAVGSRKPTKVDVRIISATNRDLAQAVSEGRFREDLYY 309 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV + +P LR+R+ED+P L HF++ + G+ ET + WPGNVRQ Sbjct: 310 RLNVFPIEMPSLRDRKEDLPALVDHFIRRFNAQEGMSITGASLETMGMIAAHDWPGNVRQ 369 Query: 360 LENTCRWLTVMAAGQEVLIQDLP---GELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 LEN+ +++ G E+ D P G + ++ + S A A + L Sbjct: 370 LENSIFRAMILSEGDELQPVDFPHISGLTPNYEILKTPNNGASISDAATTATQLNSPL-G 428 Query: 417 GHQNLL---SEAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 G +++ E +P +ER L+ A+ GH + AR LG GR+TL RK++E Sbjct: 429 GPVSIVDDNGELRPLESVERDLIQYAIDLYSGHMSQVARRLGIGRSTLYRKVRE 482 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 274/473 (57%), Gaps = 32/473 (6%) Query: 8 VVDDDSSIR----WVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 +VDD++ +R +L+ + T G E L+ + + D++L D++MP M+GL Sbjct: 9 IVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMDVKMPEMNGL 68 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L IK+ P V++MTAHS+L AV A ++GA+DY+ KP + +V +++ + Sbjct: 69 EALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVRKSL---E 125 Query: 124 EQQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ ++ P D I+G + M++VF +I RL + +VL+ GE+GTGKELV Sbjct: 126 ARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELV 185 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +SPR F+A+N AIP++L+ESELFGHEKGAFTGA + G+F+ A+ GTLF Sbjct: 186 ARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLF 245 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ D+Q +LLRVL + +F VG VK RIIAAT++NLE+ ++EG+FREDL Sbjct: 246 LDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDL 305 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNV+ + LPPLRER +DI LA +F++ +++ G + + PE L WPGN+ Sbjct: 306 FYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWPGNI 365 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN ++ ++ + L PDS AD+ G Sbjct: 366 RELENIIERSFIVENSHQITVDSL-----------------PDSIKLTPKDGADKTASVG 408 Query: 418 HQNLL--SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + L + E+E+ + +AL+ G + +NTL RK+++ G+ Sbjct: 409 YSGPLDFDAFKEEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRKYGI 461 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 179/477 (37%), Positives = 272/477 (57%), Gaps = 38/477 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ IR L L+G G T NG ++ L + D++++D++M DG + Sbjct: 4 ILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGYDV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF---DIDEAV-ALVERAISH 121 LK++++ + PVII+TA +D+AV A + GA DY+ KPF DI V ++E Sbjct: 64 LKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHGSLR 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R + I+G + AM VF I + + + +++I GESGTGK L+A A+ Sbjct: 124 LENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLAEAV 183 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H++SPR PF+A+N AAIP+ L+ESELFG++KGAFTGAN+ + G ADGGTLFLDEI Sbjct: 184 HQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFLDEI 243 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMP+ +Q+++L+VL G+ +G VD+RII+AT+++LE ++E FREDL++RL Sbjct: 244 GDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLYYRL 303 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA---WPGNVR 358 NVI + +P LRERREDIP LA F++ E V K++ E A+ + WPGNVR Sbjct: 304 NVIEIRMPALRERREDIPLLAAKFIK---EEEAVPDKVVKGFDEGAMKAMMAYPWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+N + A G+++ +LP ++ + D G Sbjct: 361 ELKNVVERAVIFAGGEQITPAELPAKI----------------------RRGDATAGPGG 398 Query: 419 QNLLSEAQP------ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +S QP + E+ ++ AL G K+ A+ LG TL RK+ +LG++ Sbjct: 399 NTEVSGLQPLKAMVYDYEKDIIINALNRFDGSKEMVAKTLGIDLTTLYRKMSKLGID 455 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 181/466 (38%), Positives = 269/466 (57%), Gaps = 31/466 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VV+DD S+R + L AG C + G L+ L + +++SD+RM MDG+ L Sbjct: 8 ILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMMPMDGITL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+I+ R P LPV++MTA++++D AV A + GA D+L KPF E AL ++H + Sbjct: 68 LKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPF---EPQAL----LAHINKY 120 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + P + +G ++ PA +++F + R++++ +VL+ GESG GKE+VA +HR S Sbjct: 121 ELPASDDGSG----VVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVARFIHRQS 176 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PF+A+N AAIP L+E+ LFG+EKGAFTGA + G+FEQA GTL LDE+ +MP Sbjct: 177 ARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLDEVTEMP 236 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 + +Q +LLRVL + + RVGG PV +++RIIA +++++ + V +G FREDL++RLNV Sbjct: 237 MGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYYRLNVFP 296 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 V +P LR+RR DI +ARHF+ G L P EAAL +WPGNVR+LEN + Sbjct: 297 VGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRELENVIQ 356 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP-DSWATLLAQWADRALRSGHQNLLS- 423 +MA G ST+ + P S T + Q A + H L Sbjct: 357 RALIMATG--------------STIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLTDT 402 Query: 424 ----EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + +LER + L G +++A LG TL KL++ Sbjct: 403 DKKVDNMKDLEREHILRTLAEVGGSRKKAIERLGISERTLRYKLQQ 448 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 193/502 (38%), Positives = 274/502 (54%), Gaps = 39/502 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V ++DD+ S+ R L G +G + E +A DV + D+++P DGL+L Sbjct: 7 VLIIDDEQSVGTFFSRLLKPKGYRVGVACSGVQAHELVAKDHYDVAMVDLKLPDADGLSL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFD-IDEAVALVERAISH--Y 122 L+ IK P VIIMT +S AV A Q GAFDY+ KPFD I L+E+A++ Sbjct: 67 LQHIKNVQPQCEVIIMTGYSTTRTAVKAIQYGAFDYIEKPFDDILLIEKLIEKALNFGMT 126 Query: 123 QEQQQPRNVQLNGPTTDI---IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q + I +G P M + I R++ I+VLI GE+GTGKE++A Sbjct: 127 DGQMDKETFSWSKVAEKIGFQVGRTPQMIKLVSIAERIAAKDINVLIQGETGTGKEVLAR 186 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H S R+ PF+A+N A+P++L+ESELFGHE+G+FTGA+ R+G FE A+ GTLFLD Sbjct: 187 FVHAASQRSDKPFLAINCGALPENLLESELFGHERGSFTGASVQRKGIFELANNGTLFLD 246 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+ L +Q +LLRVL G+F RVGG PVK +VRIIAAT+ +LE+ V++ +FREDLF+ Sbjct: 247 EIGEASLAIQVKLLRVLETGEFLRVGGEKPVKTNVRIIAATNVDLEEAVKQKQFREDLFY 306 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL+VIR+ LPPL+ER EDIP+ HF+ P A+ WPGN+R+ Sbjct: 307 RLDVIRLVLPPLKERLEDIPQFVEHFVNRFWERNDGPVPAFAPSCIEAMLNYHWPGNIRE 366 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGEL----------------FESTVAESTSQM------ 397 L N+ + G VL + L G++ + ++++TS + Sbjct: 367 LANSVEQALALCDGNAVLPEHLSGKINGQFLNDERTDKKALSYHPGLSDATSVLNVKPED 426 Query: 398 --QPDSWATL-LAQWADRALRSGHQNL----LSEAQP----ELERTLLTTALRHTQGHKQ 446 Q D A L L D R+ H+ + ++ P ELE + L G+ Sbjct: 427 LDQLDQQALLDLYHKVDGLYRAIHRTMGKKGITTVFPLTIQELEARAIEETLEFFNGNVS 486 Query: 447 EAARLLGWGRNTLTRKLKELGM 468 +AR LG GRNTL RK KE + Sbjct: 487 MSARALGIGRNTLYRKAKEYNI 508 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 181/470 (38%), Positives = 280/470 (59%), Gaps = 18/470 (3%) Query: 6 VWVVDDDSSIRWVLERALAGA-GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VV+D R L+ L + L T E+GA L L +K ++++D+RMP + G+ Sbjct: 10 VLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDLRMPRVGGMK 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L++ I+ + VI+ T + ++ AV A + G +D+L KP D +V+RA+ Sbjct: 70 LIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRDRAL 129 Query: 125 QQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q + R + +++ +P M D+F +IG ++ ++ +VLI GE+GTGKE +A A Sbjct: 130 QDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIARA 189 Query: 181 LHRHSPRAK-APFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H+ S + F+A+N A+ ++L+ESELFGHEKG++TGA+ R GRFE A GTLFLD Sbjct: 190 IHQASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFLD 249 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGD+P+ +Q +LLRVL + +F RVGG P+++DVR++AATHQ++E+ V++GKFREDL++ Sbjct: 250 EIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLYY 309 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+R+ +PPLRER EDIP L HF Q R +G + + PE LT+ WPGNVRQ Sbjct: 310 RLNVVRIDIPPLRERTEDIPVLVSHFCQKFVR-VGQKPPTISPEALDLLTKCPWPGNVRQ 368 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN V A + +DLP E+ ES++ + L + D+ Sbjct: 369 LENAIERACVTARDGVIRTKDLPPEVGRR--PESSAAGKHPFHVDLNRKLPDQ------- 419 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LSE E + AL+ ++GH + A++ G R ++T K+ + ++ Sbjct: 420 --LSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQYKID 467 >UniRef50_Q1DD46 Sigma-54 dependent DNA-binding reponse regulator Nla28 n=3 Tax=Cystobacterineae RepID=Q1DD46_MYXXD Length = 447 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 279/467 (59%), Gaps = 29/467 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP-G 59 M + VVDDD R +L+R L G T + E +A D++L+D+ MP Sbjct: 1 MSSARILVVDDDPQARDLLQRLLGPLG-AVTQAPDPRRATERIAEGAFDLVLTDMAMPEP 59 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 DGL +L ++K + P PV+++TA +++ A+ + QQGAFDYL KPFD+D + + RA+ Sbjct: 60 GDGLKVLHEVKAQLPDTPVVVVTAFGNIEGALDSIQQGAFDYLAKPFDVDAILRVARRAL 119 Query: 120 SHYQEQQQPRNV--QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ R++ Q+ + ++G +PA+ +V++ + R + S++ VLI GE+GTGKE+V Sbjct: 120 EQKRLVEENRSLRQQVERGSLMLVGRSPALLEVYKHVARAAASNVPVLITGETGTGKEMV 179 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH+ SPR PFI ++ AI + L+ESELFGH KG+FTGA+ R+G FE+A GGTLF Sbjct: 180 ARALHKRSPRMNGPFIPVDCGAITESLMESELFGHAKGSFTGASGARRGVFEEASGGTLF 239 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGD+ + VQ++LLRVL +G+ RVG PVKVDVR++AAT+++L+ RV EG FREDL Sbjct: 240 LDEIGDVGMKVQSQLLRVLQEGEIRRVGESVPVKVDVRVVAATNKDLKTRVAEGLFREDL 299 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 +RL+V+ +HLPPLRER EDIP L HF AR G ++ E A L WPGNV Sbjct: 300 LYRLDVVHLHLPPLRERSEDIPALVEHFAGRHAR--GGVRPVVTSEANARLAAYDWPGNV 357 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLEN + + QD P + ++ ST +M A L A Sbjct: 358 RQLENVVARALALNVTGVLGPQDFPEPIGDA----STPKM-----AGLAGDMPSLA---- 404 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 EL R L+H G+K EAARLL R TL + L+ Sbjct: 405 ----------ELSRRYAAQVLQHVGGNKSEAARLLDVDRKTLYKLLE 441 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 185/464 (39%), Positives = 261/464 (56%), Gaps = 29/464 (6%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +V+D +S+ + L + G + +E++ + PD++L D+R+P M G+ +L Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---SHYQE 124 +K++ P +P++ MTAH +D AV A + GA D+L KP + D V AI S + Sbjct: 61 AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 +N G IG + MQ V+R I + S S+ I GESGTGKE+ A A+H Sbjct: 121 DVDNKNQNYQG----FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAA 176 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S R PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M Sbjct: 177 SKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEM 236 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 LD+QT+LLR + G F +VG VDVR + AT+++ + VQEG+FREDL++RL VI Sbjct: 237 DLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVI 296 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 +HLPPLR R +D+ +A L ++E G + L E + WPGNVRQL+N Sbjct: 297 PLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVL 356 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS- 423 R + V+ G+E+ + LP L +QM + +RAL H+N +S Sbjct: 357 RNVVVLNEGREITLDMLPPPL---------NQM---------SAPINRALPLAHENKVSV 398 Query: 424 -EAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 E P E+ + A+ G+ AA L +T+ RKL+ Sbjct: 399 HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/467 (36%), Positives = 262/467 (56%), Gaps = 26/467 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VDD+ L L+ G +G + L PDV+LSD+ MP DGL L Sbjct: 6 ILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDGLWL 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 L+ +K+ P PV+ +T +DAAV + ++GA+D++ KP D ++RA+ + Sbjct: 66 LRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKKETM 125 Query: 124 -EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 E Q R ++D+I ++ M+ V ++ +++ S SV I+GESGTGKE+V+ A+H Sbjct: 126 REVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVH 185 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R PFIA+N A+IP LIESELFGHE+GAFTGA+ R G FE A GGTLFLDE+G Sbjct: 186 NLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELG 245 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++P+++Q +LLRVL +G+ R+GG ++VDVR++ AT+++L+Q ++ G+FREDL+ RLN Sbjct: 246 EIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLN 305 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V ++HLPPLRERR+D+P L +HF+ + G +HPE L WPGN+R+L N Sbjct: 306 VFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRN 365 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 ++ G+ + + LP ++ + T ++ Sbjct: 366 AVERAVILCDGELITREHLPPDMAGKSPERHTFRLP-----------------------F 402 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + +ER + +L+ +K A +LG TL KL E Sbjct: 403 GLSLDAVEREYILGSLQRNGNNKARTAEVLGVSEKTLYNKLNRYAAE 449 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 159/371 (42%), Positives = 234/371 (63%), Gaps = 4/371 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ + R L T + G E L+ + D+L+ D+ MP MDGL + Sbjct: 5 ILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDGLEV 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ +K+RHP + VI+MT S++ AV A + GAFDYL KPFD DE +V RA+ Q Sbjct: 65 LQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERRQLM 124 Query: 126 QQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q+ R ++ + +IIG +P MQ VF +I + + ++ +VLI GESGTGKE++A A+ Sbjct: 125 QENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIARAI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R PF+ ++ + ++L+ESELFGH KG+FTGA ++G F+ A+ GTLFLDE Sbjct: 185 HYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFLDEF 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++PL Q +LLRV+ + +F VG K +VR+I AT+++L+ V EG FREDL++R+ Sbjct: 245 GNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLYYRI 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV +H P LRERR+DIP LA HFL++ ELG + + L WPGNVR+LE Sbjct: 305 NVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGNVRELE 364 Query: 362 NTCRWLTVMAA 372 NT + ++++ Sbjct: 365 NTMQRAVILSS 375 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 184/471 (39%), Positives = 271/471 (57%), Gaps = 28/471 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R +VDD+ IR +LE L L + N E E LA + D+ L+D+R+P Sbjct: 1 MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL L++ I+QRHP PV ++TA+ LD A+ A + GAFD+L KP D+ LV A+ Sbjct: 61 SGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATAL- 119 Query: 121 HYQEQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + RN + D ++GE+P M+ + IG+L+RS V I+GESG+GKELVA Sbjct: 120 ------RLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVA 173 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H PR + PF+ +N AIP +L+ESE FGH+KG+FTGA +QG F+ A GGTLFL Sbjct: 174 RLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFL 233 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ D+P+ +Q +LLR + + VGG V VDVRI+ ATH++L V G+FR+DL+ Sbjct: 234 DEVADLPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLY 293 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +PPLRERREDIP LA L+ A + G+ A L + + L +PGNVR Sbjct: 294 YRLNVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVR 353 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN + ++ DL +A++ Q A L++ + Sbjct: 354 ELENMLERAYTLCEDDQIQPHDL-------RLADAPGASQ--EGAASLSEIDN------- 397 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + ++ER L+ AL T+ ++ AA+ LG ++ +LK+LG++ Sbjct: 398 ---LEDYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID 445 >UniRef50_Q314G6 Two component transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=Q314G6_DESDG Length = 488 Score = 315 bits (806), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 186/476 (39%), Positives = 274/476 (57%), Gaps = 22/476 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGA--GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 R + +VDD+ L R ++ + + E LE LA ++ ++++D+RMP M Sbjct: 15 RLCLLIVDDERDFASGLARLISSRFRDIDVVPVFSAKEALEVLAERSVHLMMTDLRMPEM 74 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ LL+Q + P L ++++TAH ++ AV A Q GA+D+L KP + D+ + V + + Sbjct: 75 GGMQLLRQALEVQPGLSMVVLTAHGTIETAVEALQSGAYDFLTKPIEPDQLFSAVAKGLE 134 Query: 121 H---YQEQQQPRNV-QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +E + R + G +++GE AMQ + R I +++S +VL+ GESGTGKEL Sbjct: 135 RSRLLEENNRLRQIISAGGEPGELVGEGRAMQQLKRTIAAVAQSDYTVLVRGESGTGKEL 194 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA +HR RA PF+A+N AIP++L+ESELFGH KGAFTGA+ +G F AD GTL Sbjct: 195 VARLVHRLGNRAGRPFMAVNCPAIPENLLESELFGHVKGAFTGADRDHKGLFAVADKGTL 254 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIGD+ +QT+LLR L DG+ VG VDVR++A+T+Q+LE R+ + FRED Sbjct: 255 HLDEIGDISAPIQTKLLRCLQDGEIRPVGASRSETVDVRVVASTNQDLEARIADKSFRED 314 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV+ V LPPLRER EDIP L + L+ A E+G+E K + P+ +TR WPGN Sbjct: 315 LYYRLNVLTVTLPPLRERVEDIPLLVHYLLRKACTEMGLEEKEISPDVVEWMTRRTWPGN 374 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA--- 413 VR+L+N R LTV AG+ V + + V + + P A L+ R+ Sbjct: 375 VRELQNFVRRLTVFCAGRLVDMDII------RMVEQGSGGAMPPVVAGGLSPGGFRSGEG 428 Query: 414 ---LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + ++ + R LLT+A G+ EAAR+ G R L + L L Sbjct: 429 FVPYKDAKAKVVDDFTTAYLRDLLTSA----GGNVSEAARMSGLSRVALQKILTRL 480 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 187/444 (42%), Positives = 262/444 (59%), Gaps = 21/444 (4%) Query: 30 CTTFENG--AEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDL 87 CT E+ AE L+ L V+L+D+ P +GL LLK+ Q + + I+ Sbjct: 31 CTVLESDSPAEALKLLQDDEVSVILTDLFAPSNEGLELLKKASQHNSQIVTIVGVPVDHR 90 Query: 88 DAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY----QEQQQPRNVQLNGPTTDIIGE 143 A+ + ++GAF L P++ +E + RA+ H+ + + + R + + IIG+ Sbjct: 91 GMALESLRRGAFFCLNTPYNHEETIIATSRALQHHDLLTKGEIKARKFRKSDGFHGIIGQ 150 Query: 144 APAMQDVFRIIGRLS-RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK 202 AP M+ +F I +L+ SVL+ GESGTGKELVA A+H H PR++ F+ +N AAIP+ Sbjct: 151 APKMRQLFNNIEKLAAEGDSSVLVLGESGTGKELVARAIHAHGPRSRKNFVPVNCAAIPE 210 Query: 203 DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFY 262 DL+ESELFG+ KGAFTGA + GR + A+GGTLFLDEIGDM +Q +LLRVL + +F Sbjct: 211 DLLESELFGYVKGAFTGATQAKMGRLQYAEGGTLFLDEIGDMKASLQAKLLRVLQEKEFE 270 Query: 263 RVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLA 322 VGG PV VDVRI+AATH++LE+ V EG+FREDL++RLNVI + +PPLR+R+EDI L Sbjct: 271 PVGGVKPVSVDVRIVAATHRDLEKSVAEGRFREDLYYRLNVIPLQIPPLRKRKEDISLLI 330 Query: 323 RHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLP 382 F+ + R+ K + AL + WPGNVR+LEN + +++ AGQ V +DLP Sbjct: 331 ERFVGIYNRKKKNPFKGFSDDALQALKQYPWPGNVRELENLVQRMSIFFAGQSVSRKDLP 390 Query: 383 GELFESTVAESTSQMQPDSWATLLAQWADRALRSG--HQNLLSEAQPELERTLLTTALRH 440 E +Q QP + Q +L G NLL E L+ AL Sbjct: 391 ----EKYQGCDEAQQQP-----VQEQENSISLEDGGVDFNLLVN---RFENQLILQALNV 438 Query: 441 TQGHKQEAARLLGWGRNTLTRKLK 464 T G+K+EAA+LL R TL KLK Sbjct: 439 TGGNKREAAKLLNLKRTTLIEKLK 462 >UniRef50_Q3SKC8 Two Component Transcriptional Regulator, Fis family n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SKC8_THIDA Length = 454 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 187/469 (39%), Positives = 275/469 (58%), Gaps = 32/469 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD S+R L L GAG E+G E L L ++ D++++D+RM GM G+ L Sbjct: 3 ILLVDDQKSLRRSLSLMLQGAGFETGEAESGEEALSCLGAERFDLVITDLRMEGMSGVDL 62 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF---DIDEAVALVERAISHY 122 L++IK+ +P+LPVI++TA+ +D+AV A + GAFDYL KPF DI E + + A + Sbjct: 63 LREIKRLNPLLPVILITAYGSIDSAVDAMRLGAFDYLTKPFREQDILEKIRASQSAPPGF 122 Query: 123 Q-EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R+ + DI+ + P M+ R++R+ ISVLI GE+GTGK VA + Sbjct: 123 ALAAEASRDAE------DIVADTPQMRATLIKAERIARTDISVLITGETGTGKTRVARFI 176 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R +APF+++N A++P++L+ESELFGH KGAFTGA R G FE+ADGGTLFLDE+ Sbjct: 177 HENSARREAPFVSINCASLPENLLESELFGHVKGAFTGATESRAGLFEEADGGTLFLDEV 236 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 + +Q +LL VL + RVG KVD+RI++A++Q+L + +G FR DL+ RL Sbjct: 237 DTLSPAMQAKLLSVLQEKVIRRVGSNKGKKVDIRIMSASNQDLALLIDKGHFRSDLYFRL 296 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 N IR+HLPPLRER +D+ L + FL V R+ G L P EA + A+PGN+RQLE Sbjct: 297 NGIRLHLPPLRERGQDLHNLLQRFLAVYGRKYGRGRLRLSPRAEAYVLGYAYPGNIRQLE 356 Query: 362 NTCRWLTVMA--AGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 + + V A AG + + LP +L + A + + +P AD Sbjct: 357 SFVEQMAVFADDAGY-IDVDALPEDLLQQAPA-AMPRHEPAELGEGGGSIADS------- 407 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +R ++ L+ + EAAR+LG GR TL RK++E + Sbjct: 408 ----------QRRMIEATLQRAS-NIGEAARVLGIGRTTLWRKMREYNL 445 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 170/469 (36%), Positives = 275/469 (58%), Gaps = 30/469 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V ++DD+ +R + +R +A G N + + + DV+L D+++P G+ Sbjct: 3 GTVLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGSGV 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + IK+++P + +I++TA+ ++ V A + GAFDYL K D + + L+ RA+ Q Sbjct: 63 DYARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEKVQ 122 Query: 124 EQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q++ V I+G + ++D +++ + +VL+ GE+GTGKE+ A Sbjct: 123 LQKRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQ 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+ALN +A ++L+ESELFG++ GAFT AN ++G E+A+ GT+FLD Sbjct: 183 AIHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MPLD+Q++LLRVL G+F +VG P KV+VRIIAAT+++L++ Q+G FREDL++ Sbjct: 243 EIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV + LPPLRER++DIP+LA +F+ + + ++ + + P L W GN+R+ Sbjct: 303 RLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNIRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N +MA G ++ ++ LP +L Q AD+A Sbjct: 363 LKNVLERAVIMAGGDDLAVEHLPLDL----------------------QIADKA----ST 396 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + +E+ + L HT+ +K EAARLL G TL RK++E G+ Sbjct: 397 PLSAFDLASVEKLHIIRVLYHTKNNKTEAARLLNIGLATLYRKIEEYGL 445 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 183/461 (39%), Positives = 266/461 (57%), Gaps = 19/461 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + + +DD +R + AL AG T +GA+ L A+ + D++L+D+R+PG+DGL L Sbjct: 3 LLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLTL 62 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++ ++ P V++MTA++D D AVS ++GA DY+ KPF++DE + ++R + + Sbjct: 63 FRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHAFR 122 Query: 126 QQPRNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 + + GP ++G++ M+ V + + S + VL+ GE+GTGK+L A +H Sbjct: 123 KGMQAGAPPGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHER 182 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S RA PF+ +N AAIP+ L ESELFGHEKGAFTGA+ R GRFE ADGGTLFLDE+G++ Sbjct: 183 SHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGEL 242 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 Q +LLR L F VG V+VDVR+IAAT+++L + G FR+DL++RLNVI Sbjct: 243 AASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNVI 302 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 +H PPLRERR D+P L FL A LG L P AAL +PGNVR+L++ Sbjct: 303 DLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHAL 362 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 +A G + ++ LP PD L A A A + L E Sbjct: 363 ERAVALARGGPIRLEHLP----------------PDLAGPLPAGEAAPAGEGLAR--LGE 404 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 A + E+ + AL T GH+ AA LLG R +L +L++ Sbjct: 405 AVEQFEQQYIRRALEKTGGHRARAAALLGISRKSLWERLRD 445 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 273/478 (57%), Gaps = 45/478 (9%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-----DVLLSDIRMPGM 60 + + DDD +IR LE L G T NG++ + + T D++L D+R+ GM Sbjct: 4 ILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRLTGM 63 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER--- 117 DG +L +K++ P LP+I++TA+ ++ A+ A + GA D+L KP D+D ++++ Sbjct: 64 DGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDKIFE 123 Query: 118 --AISH----YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 A+S + + P Q ++G AM++V++ IG ++ S +VLI GESG Sbjct: 124 MSALSRTGVTFSDSFDPHFEQ-----NIMVGRTRAMKEVYKTIGAVADSRATVLIQGESG 178 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKE+VA A+H +S PFIA+ +A+ ++ESELFGHEKGAFTGA + G+FE A Sbjct: 179 TGKEMVARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELA 238 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTLFLDEI ++ ++Q +LLR + + +F RVGG +K DVRI+AAT++NL V G Sbjct: 239 QGGTLFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASG 298 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 FR DL++RL V+ + LPPLRER+EDIP L + L+ E G +++ ET + Sbjct: 299 MFRNDLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEH 358 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 +WPGNVR+LENT R +++ G +L P+S L + D Sbjct: 359 SWPGNVRELENTLRRAVILSHGNMLL---------------------PESLH--LEEGCD 395 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 R LL + E+ER + L + + K+ AA +LG R TL R++KE G+E Sbjct: 396 GQERFP---LLLKPLHEVEREHIQNVLCYVRNEKKRAAEILGISRPTLDRRIKEYGLE 450 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/385 (42%), Positives = 241/385 (62%), Gaps = 14/385 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ SI L L G T NG E ++ L+ +PD++L DI MPGMDGL Sbjct: 5 ILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGLET 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LKQ+++ HP +PV+++T H ++ AV A + GA+D++ KP I++ V + A++ + + Sbjct: 65 LKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRRLE 124 Query: 126 QQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 ++ N+ L + I G +PA+ +V I ++ + VLI+GE+GTGKE+VA +H Sbjct: 125 EE--NLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R+ P + +N A+I K +ESELFGHEKGAF GA ++GRFE A+ GTLF DE+G Sbjct: 183 HLSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DM ++ Q+R+LRVL + +F RVGG + VDVR+IA+T++NLE+ + +G FREDL++RLN Sbjct: 243 DMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLN 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA-----ALTRLAWPGNV 357 V+ + +PPL+ER +DIP L F RE L P+T + AL R WPGNV Sbjct: 303 VVPIAMPPLKERAQDIPSLCEEFF----REFAAADNLDEPKTISQNALEALMRYPWPGNV 358 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLP 382 R+L N L + V I+ +P Sbjct: 359 RELRNLVERLVISTKASHVDIRHIP 383 >UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC n=8 Tax=cellular organisms RepID=C0YJU0_9FLAO Length = 394 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/384 (42%), Positives = 243/384 (63%), Gaps = 14/384 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTF---ENGAEVLEALASKTPDVLLSDIRM 57 MQ+ + +V+D+ +I VL L+ LT F E+G E + + + +++SDI+M Sbjct: 1 MQK--ILIVEDEKAISGVLHSILSDE-LTDYEFVIAEDGLEGYKQVEKEDFALVISDIKM 57 Query: 58 PGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117 P + G LLKQ P I+++ H+D+D+AVS ++GA+D++ KP DI+ + V+ Sbjct: 58 PKLSGTELLKQSLALKPETTFIMISGHADIDSAVSCLKEGAYDFISKPIDINRLITSVKN 117 Query: 118 AISHYQEQQQPRNVQLNGPTT--------DIIGEAPAMQDVFRIIGRLSRSSISVLINGE 169 A+ +++ +N+Q T +IG +PA+Q + +I +++ S VLI G Sbjct: 118 ALVKETLKKENKNLQTENKTLKKKVSKKYQMIGTSPALQKIQDMIEKVAASDARVLITGP 177 Query: 170 SGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE 229 +G GKELVAHA+H S RA+ P + +N AAIP +LIESELFGH KG+FTGA +QG+FE Sbjct: 178 NGAGKELVAHAIHNQSERARGPMVEVNCAAIPSELIESELFGHVKGSFTGAIKDKQGKFE 237 Query: 230 QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 QA+GGT+FLDEIGDM L Q ++LR L + + VG +KVDVR+IAAT++N+++ ++ Sbjct: 238 QANGGTIFLDEIGDMSLIAQAKVLRALQESKVSPVGSDKEIKVDVRVIAATNKNMQKEIE 297 Query: 290 EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 EGKFREDL+HRL+VI +++PPL ER+EDI L HF + A E G AK + AL Sbjct: 298 EGKFREDLYHRLSVIEIYVPPLDERKEDIKLLVEHFAGMIADEHGTAAKKFDDKAIDALK 357 Query: 350 RLAWPGNVRQLENTCRWLTVMAAG 373 L+W GN+R+L N L ++ Sbjct: 358 ALSWTGNIRELRNVVERLIILGGN 381 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 256/464 (55%), Gaps = 22/464 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + DDD R + L+ G +G + LE + ++++DI MP + Sbjct: 1 MDSARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRV 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +GL +K++K P + I +A ++ + + + GAF YL KPF+++E V+R + Sbjct: 61 NGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 121 HYQEQQQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H Q+Q ++ +IIGE+ M +F +I +++ S +VLI GESGTGKEL Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S RA F+ +N AAIP DL+ESELFGH KG+FTGA R GRFE AD GTL Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM ++Q +LLRVL + + VG KVDVRIIAAT+QNLE V FRED Sbjct: 241 FLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+VI + LPPLRER+ DIP L +FL+ R + + T L WPGN Sbjct: 301 LYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQ-PDSWATLLAQWADRALR 415 VR+LEN L ++ + QDLP + A + ++ PD+ Sbjct: 361 VRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTGFC----------- 409 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 L+ A + E L+ AL T G+K+EAA LL R TL Sbjct: 410 ------LNSAVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_A3WNQ8 Response regulator containing CheY-like receiver, AAA-type ATPase,and DNA-binding domains n=2 Tax=Idiomarina RepID=A3WNQ8_9GAMM Length = 448 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 197/462 (42%), Positives = 267/462 (57%), Gaps = 32/462 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VV+DDS++R +L L F + + L S DV++SDIR+PG GL+L Sbjct: 8 IAVVEDDSALRELLVEELEAEDYKVFAFPSTEDYQAELPS--VDVVVSDIRLPGSSGLSL 65 Query: 66 LKQIKQR-HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+ +++ P L I++TA + +D AV A +QGA D+L KP D++ + V+R + H Sbjct: 66 LEHVREAGAPAL--ILITAFATVDQAVDALKQGAADFLTKPLDVEHLLLSVQRVLEHRLL 123 Query: 125 QQQPRNV--QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 +Q+ Q GP +IG++PAM+ ++ I RL + SVLI GESGTGKELVA A+H Sbjct: 124 KQELTRFKSQQKGPAG-LIGQSPAMRKLYHQIERLGTAGGSVLITGESGTGKELVARAIH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R F A+N A IP +L+ESE FGH +GAFTGA R G F+Q DGGTL LDEIG Sbjct: 183 ELSERRDKSFQAVNCAGIPSELMESEFFGHTQGAFTGAQGKRLGLFKQVDGGTLLLDEIG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +MPL +Q +LLRVL +G VG KVDVRIIAATHQNLEQRV++G+FREDLF+RL Sbjct: 243 EMPLALQAKLLRVLQEGTLRAVGSDEEEKVDVRIIAATHQNLEQRVRDGEFREDLFYRLE 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V +P LRER ED+ RLA HF+ V A G + + L R +PGNVR+L+N Sbjct: 303 TFSVKVPALRERGEDVERLAHHFISVYAERAGKRITDIDTDALDILYRYRFPGNVRELQN 362 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 A + + DLP + E V + + QP W TL A HQ+ Sbjct: 363 AIERAVTFAQSHHLQVDDLPERMLE--VRDPIADKQP-HWHTLQA----------HQD-- 407 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + + H G+K++AA +LG R TL R L+ Sbjct: 408 ---------AYIQDVMNHVGGNKKKAAEILGVTRRTLYRWLE 440 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 276/467 (59%), Gaps = 18/467 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD++ I ++R L+G G +G E + +A + D+ L D+ + DG+ + Sbjct: 4 ILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGIEV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK +K+ P L VII+T + +++AV + Q GAF Y+ KPF D +V+ A+ + Sbjct: 64 LKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQTLK 123 Query: 126 QQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ R ++ N + IIG++ A Q++ + ++R +VLI GESGTGKE+VA A+ Sbjct: 124 REVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARAI 183 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R + FIA+N A+IP L+ESELFGHEKGAFTGA+ ++G FE+A GT+FLDEI Sbjct: 184 HDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDEI 243 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+M + +Q +LLRVL + RVG +++D R+IAAT++NL +R++E FREDLF+RL Sbjct: 244 GEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRL 303 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV +++PPLRER DI LA +FL +R G + + + PE E + + AWPGNVR+L Sbjct: 304 NVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVRELR 363 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + +M +G +L + LP E+ + P S A L Sbjct: 364 NVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLG-------------- 409 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L EA +E++L+ AL+ T + + A L R TL K+++ G+ Sbjct: 410 LEEAVSAIEKSLIQQALQKTGWNVLQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 184/471 (39%), Positives = 269/471 (57%), Gaps = 18/471 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ S+R L+ L G + + G LE LA + D+L+SDIRMP +GL L Sbjct: 4 ILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLEL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 L + K+ P LPV+++TA + D AVSA + GA+DY+ KPF +DE +V A+S Q Sbjct: 64 LVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQPL 123 Query: 124 -EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + V IIG +P M+ ++ II R++ + +VLI GESGTGKELVA A+H Sbjct: 124 PAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAIH 183 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 R SP + F+ + +AIP+ L ESE+FGH KGAFTGA + R G FEQA+ GT FLDEIG Sbjct: 184 RLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEIG 243 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++ +QT+LLRVL + + RVG ++ +R+I+AT+++LE+ V G+FREDLF+RL Sbjct: 244 ELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRLA 303 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ + +PPLRER+ D+P L HFL AR + + L +PGNVR+LEN Sbjct: 304 VVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRELEN 363 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLL----AQWADRALRSGH 418 M Q +L + L T++ +P+ + + A+ G Sbjct: 364 IIERGVAMENSQIILPESL-------TLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGL 416 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + L+ +LER ++ AL K AA LL +L K+K+ G++ Sbjct: 417 EPTLA----DLEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKKYGID 463 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 176/468 (37%), Positives = 271/468 (57%), Gaps = 11/468 (2%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 ++DDD I +L+ AG + L+ + S P+V + DI +P G+ +LK Sbjct: 7 ILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKSGIEVLK 66 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 + K+ P L VI+ T + A+ A + GAFDY+ KPFD+ + V++A+ ++ Sbjct: 67 EAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALECNLLSRK 126 Query: 128 PRNV----QLNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 R Q+ T+ +IG +P M ++++++G ++ S +VLI GESGTGKEL+A A+ Sbjct: 127 VRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKELLARAV 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 + +S R PF+A+N AA+P+ L+ESELFGHEKGAFT A++ R G+FEQ +GGT+FLDEI Sbjct: 187 YNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGTIFLDEI 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+M Q + LRVL + +F RVGG +KVDVR+IAAT+++L V+E FR DL++RL Sbjct: 247 GEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRMDLYYRL 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V+ LPPLR+R EDIP L F++ +++ G K + PET A LT W GN+R+L+ Sbjct: 307 RVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEGNIRELK 366 Query: 362 NTCRWLTVMAAGQEVLIQDLPGEL-----FESTVAESTSQMQPDSWATLLAQWADRALRS 416 N TV G ++ D L F+ E+ + + ++L D + Sbjct: 367 NVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVFDGICQK 426 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + LE+ L+ A+ + ++ AA+LLG RNTL +L+ Sbjct: 427 NKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLE 474 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 191/507 (37%), Positives = 274/507 (54%), Gaps = 63/507 (12%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ ++R L AL+ G ENG LE + S+ PD++++DIRMP MDG+A+ Sbjct: 9 ILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMDGIAM 68 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+QI+ P LPV+I+T ++ ++ AV A +QGA DY+ KPF ++ ++E I Q Sbjct: 69 LQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVE----VIEETIKKVMRQ 124 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGR-------------LSRSSISVLINGESGT 172 Q T + +IGR ++ S +VL+ GESGT Sbjct: 125 QPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESGT 184 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD 232 GKE+ A +H S R PF+ALN AA+P+ L+ESELFGHEKGAFTGA ++G+FE A Sbjct: 185 GKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELAH 244 Query: 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 GGTL LDEIG++PL +Q +LLRVL + + R+GG PVKVDV ++A T+++L + V++G Sbjct: 245 GGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDGT 304 Query: 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 FR+DL++RLNVI + LP LRER +DI LA F++ +R K L Sbjct: 305 FRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFLDYD 364 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQDL--------------------PGELFESTVAE 392 WPGNVR++EN +++ G E+ + D P + AE Sbjct: 365 WPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVDAAE 424 Query: 393 STSQM--------------QPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTAL 438 + PDS ATL + A R+LR E+ER ++ AL Sbjct: 425 PEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLR------------EVERQMILQAL 472 Query: 439 RHTQGHKQEAARLLGWGRNTLTRKLKE 465 R T ++ AA++LG TL KL E Sbjct: 473 RQTDDNRTHAAKMLGISVRTLRNKLNE 499 >UniRef50_C5CF13 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF13_KOSOT Length = 446 Score = 313 bits (803), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 181/469 (38%), Positives = 284/469 (60%), Gaps = 33/469 (7%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+R ++ VVDDD + +L AL G T + E L ++ D L DIR+P Sbjct: 1 MKRKLL-VVDDDMAFNLILCEALESEGYLVTKAHDLKSAKELLQEESFDCALLDIRLPDG 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L+ + + + VI+M+AH +++ AVSA ++GA+++L KPFD++ A+ VERA+ Sbjct: 60 DGIELIDFARSQETI--VIVMSAHGNIETAVSAVKKGAYNFLEKPFDLNHALVEVERALK 117 Query: 121 HYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q++ R V+ G T +++G + ++ + ++I ++ ++VLI GESGTGKE+ Sbjct: 118 FAELQREHRLLLKKVKQLGFTDELLGVSESIVSIKKLIENIAPKKVTVLIQGESGTGKEV 177 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A +H+ S R + F+ +N AIP++L ESE+FG+EKGAFTGA ++G E+AD GTL Sbjct: 178 IARMIHKLSGRKE--FVDINCGAIPENLFESEIFGYEKGAFTGAGDSKKGLVEEADRGTL 235 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI ++P+ +Q +LLR + G F R+G K DVRII AT+++LE+ V+EGKFRED Sbjct: 236 FLDEISELPITLQPKLLRFIETGTFQRIGSTKRKKTDVRIICATNRDLEKLVEEGKFRED 295 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA-ALTRLAWPG 355 LF+RLNV+R+ LPPLRER EDI LA+ F++ + ELG+ + ET AL WPG Sbjct: 296 LFYRLNVVRIKLPPLRERPEDIAILAKQFVKDISAELGLRKRPKISETFIQALMNYHWPG 355 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L N L+++A V +S+ ++ +L D + Sbjct: 356 NVRELRNC--LLSILA------------------VHDSSETLEEWMLFDVLGSRIDNSRD 395 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + +++L E ELE+ + L+ G+K + A++LG ++TL KLK Sbjct: 396 ASNEDLTLE---ELEKRYIRKLLKKYSGNKTKVAQVLGISKSTLYEKLK 441 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 313 bits (802), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 267/464 (57%), Gaps = 26/464 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VD+D+++ +E +LA G CT +G E + + +++++D+ M +DG+ + Sbjct: 18 VLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVDGMEV 77 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L + K+ P VI++T H+ + AV A QQGAF++L KP A+ E+A + + Sbjct: 78 LARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADAVRLR 137 Query: 126 QQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q N +LN + II + M+ V + R++ + SVLI GESGTGKELVA Sbjct: 138 QT--NQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELVAQ 195 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H++SPR +ALN AA+ ++L+ESELFGH KGA+T A R G FE A+GGTLFLD Sbjct: 196 AIHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGTLFLD 255 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GDMPL Q +LLRVL + Q RVG P++V+VR+++AT++ LE ++ G FR DL++ Sbjct: 256 EVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRADLYY 315 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V+ V LP LR+RREDI LA HF + R K + P L WPGNVRQ Sbjct: 316 RLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPGNVRQ 375 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + V+ + I DLP EL ++ + A+ SG Sbjct: 376 LRNAIETMVVLDTDGILDIDDLPPELVDAE------------------ELRTPAIASGPS 417 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 L+ + +ER + L+ T G+++EAAR+LG G TL RKL Sbjct: 418 ELIGQPLDNIERWAIEETLKLTSGNREEAARILGIGARTLYRKL 461 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 170/472 (36%), Positives = 276/472 (58%), Gaps = 19/472 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ + L L G F + L L + PD++L D+R+P M+GL + Sbjct: 4 IAIVDDEKVLVNSLRIGLTKKGYRVYPFYDANGFLSYLGANEPDLILLDLRLPDMNGLEV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 L+QI+ + +P +++TAH D+ +AV A + GAFDYL KPFD++E ++++ + Q Sbjct: 64 LRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYLNKPFDMEELELIIKKVLGEAQLV 123 Query: 124 ------EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSR-SSISVLINGESGTGKEL 176 Q+ + V L +IIG++P M ++++ + +LS + +VLI GESGTGK+L Sbjct: 124 KEVEHHRQRSYKAVILE----NIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDL 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H +PR+ PFI +N A++P+ L+ESELFGHEKGAFT A + G E A+ GTL Sbjct: 180 LAKAIHNLNPRSGRPFIEINCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTL 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++ + +Q +LL+ + F RVGG + V V+V II AT++NLEQ ++E FR+D Sbjct: 240 FLDEIGELSILLQAKLLKFIETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQD 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV+ + PPLR+R+EDI ++ ++L R+ G + + + + WPGN Sbjct: 300 LFYRLNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L+N L +++ G + + LP + + +A S + + D ++ Sbjct: 360 VRELKNLIERLVILSDGATITGRHLPDGMIQP-IAASERENRFDPMHVFKQDFS-----R 413 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 G Q + E +E+ ++ AL K AA+ LG R +L R++ L + Sbjct: 414 GEQIPMDEILTAVEKKMIVNALEKADNVKTRAAKALGISRYSLLRRISRLKI 465 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 183/470 (38%), Positives = 270/470 (57%), Gaps = 37/470 (7%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V +VDD+ + VL L G + + AE +AL+ + D +++D++MPG DG+ Sbjct: 7 GKVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGI 66 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---S 120 L+ + + +P +P+I +TA+ +D+AV A +GAF Y KP D + ++ RA+ S Sbjct: 67 QLMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQRS 126 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +E + R G I+G P M +F + + S SVLI GE+GTGKEL+A + Sbjct: 127 LKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARS 186 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R PF+A+N AA+P++LIESELFG+EKGAF+GA + R GRFE+A GT+FLDE Sbjct: 187 LHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIFLDE 246 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ + +Q +LLRVL + + R+G +KV+ R+I++T++N+ + G FREDLF+R Sbjct: 247 IGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDLFYR 306 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGV-EAKLLHPETEA--ALTRLAWPGNV 357 LNV++V +PPLR+RREDIP LA + RE G E K+L + E WPGN+ Sbjct: 307 LNVVQVQVPPLRDRREDIPLLAAELV----REYGAREGKVLRFDDEVMQVFLNYDWPGNI 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTV-AESTSQMQPDSWATLLAQWADRALRS 416 RQL N V+A + ++LP EL V ES Q+ R LR Sbjct: 363 RQLGNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQV--------------RTLR- 407 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 ELE + AL + G+K AA++LG R L ++L E+ Sbjct: 408 -----------ELEEAAILAALEESGGNKSHAAKMLGISRKALYKRLGEM 446 >UniRef50_A5D4G1 Response regulator n=8 Tax=Bacteria RepID=A5D4G1_PELTS Length = 545 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 199/526 (37%), Positives = 281/526 (53%), Gaps = 69/526 (13%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPGMDGLA 64 V +VDD+ I ++ R L G NG E E +TP DV L D+ +P DG Sbjct: 6 VLIVDDEEDIGTLVSRLLKKKGYEVKIALNGMEA-EGFIRETPVDVALVDLNLPDTDGFT 64 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVERAISHYQ 123 LL++IK+ +P VI+MT + A A + GAF+YL KPF DI E +VERA S+ + Sbjct: 65 LLRKIKKVNPRCEVILMTGNGTPGTAEKAVRSGAFNYLGKPFRDISEVETMVERAASYGK 124 Query: 124 E--QQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q QP + P + +G + M + I ++++ I+VLI GE+GTGKE++ Sbjct: 125 KFLQSQPSGAEW-APIAERLGFQVGRSAVMCSLVDIAYKIAKKDINVLIQGETGTGKEML 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H S R+ FI +N A+PKDL+E+ELFGHEKGAFTGA ++R+G FE A GGTLF Sbjct: 184 AKFIHAASNRSHEIFIPVNCGALPKDLVETELFGHEKGAFTGAVSMRRGLFEMASGGTLF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ +Q +LLRVL G+F RVGG VK DVR+IAAT+ +L +Q FREDL Sbjct: 244 LDEIGEVSPAIQVKLLRVLETGEFLRVGGEKYVKTDVRLIAATNVDLRLALQNKTFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RL +R+ +PPLRERREDIP LA +F++ A L + ++ + L +WPGNV Sbjct: 304 FYRLEGVRLEIPPLRERREDIPLLAEYFVRKANPGLLISSRAVE-----LLCNYSWPGNV 358 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD----------------- 400 R+L N R + G +L + L ++ + ++ D Sbjct: 359 RELSNIIRQAVALCDGNIILPEHLSAKIAARNSVQVKTRDTNDHSETGKKGAYGSGSREG 418 Query: 401 ---------SWATLLAQW------------------------ADRALRSGHQNLLSEAQP 427 S TLL ++ R L + L+ A P Sbjct: 419 SAGAGFYEKSLPTLLERYFAAAALEGASSEELMDILERVRRLEKRVLHVMREKGLNSAMP 478 Query: 428 ----ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E E +T AL + QG AAR LG GRNTL+RK+K+ G++ Sbjct: 479 PSLAEAEVRAITEALDYHQGIIVNAARSLGIGRNTLSRKIKQYGIK 524 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/393 (42%), Positives = 231/393 (58%), Gaps = 2/393 (0%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +V+D +S+ + L G+ G + +++L + PD++L D+R+P M G+ +L Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 +K HP +P+I MTAH +D AV A + G+ D+L KP + D V AI + + Sbjct: 61 AVKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKN 120 Query: 128 PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187 + + IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S R Sbjct: 121 DADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRR 180 Query: 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD 247 PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M LD Sbjct: 181 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD 240 Query: 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 +QT+LLR + G F +VG VDVR + AT+++ + VQEG+FREDL++RL VI +H Sbjct: 241 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 300 Query: 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWL 367 LPPLRER ED+ +A L + E G WPGNVRQL+N R + Sbjct: 301 LPPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNV 360 Query: 368 TVMAAGQEVLIQDLPGELFESTVAESTSQMQPD 400 V+ G+E+ ++ LP L + E +QPD Sbjct: 361 VVLNNGKEITMEMLPPPLNQPF--ERKESVQPD 391 >UniRef50_B9M936 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M936_GEOSF Length = 452 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 166/403 (41%), Positives = 245/403 (60%), Gaps = 10/403 (2%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 IV V+DD SI +E T +G + + PD+++ DIR+P MDGL Sbjct: 4 IVLVIDDQPSILQSMEVFFQLRSWKVHTAPDGKKGISLARRVQPDLVVLDIRLPDMDGLE 63 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER-----AI 119 +LK+++ R P VI++TAH D+++ + A + GAFDYL KP DIDE ++++R + Sbjct: 64 VLKELRSRVPNAEVIMITAHQDMESTIKAIKAGAFDYLHKPIDIDEMDSVLKRLRAMMSA 123 Query: 120 SHYQEQQQPRNVQLNG-PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + N L G T +IG++ AM++VF+ I S + +++L+ GESGTGK++VA Sbjct: 124 APVAADDESANQPLGGLDTLHLIGKSKAMKEVFKKIALASGARVTMLVQGESGTGKDMVA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+HR+SP PF ++ + + L+ESELFG+EKGAFTGA+ R GR E GT+F Sbjct: 184 QAIHRNSPWNNKPFTVMDCSTLAPSLVESELFGYEKGAFTGADRTRAGRIELTGDGTVFF 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++PL +Q+RLLR L +GQF RVGG AP++ + RIIAAT+++L V EG FREDL+ Sbjct: 244 DEIGELPLHLQSRLLRFLQEGQFVRVGGVAPIQSNARIIAATNRDLLAMVAEGTFREDLY 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RL V+ +H+PPLR+RR DIP LAR L+ A + ++L L + WPGNVR Sbjct: 304 FRLKVVTIHMPPLRDRRSDIPDLARFLLEKIAARTALRPRMLSEGAIGELMKRDWPGNVR 363 Query: 359 QLENTCRWLTVMAA----GQEVLIQDLPGELFESTVAESTSQM 397 +LEN+ +M +E L L G+ ++ S + Sbjct: 364 ELENSLTRAALMTKSTVLSEEELAAALDGDRYQPATERSVKSL 406 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 191/468 (40%), Positives = 276/468 (58%), Gaps = 25/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPD---VLLSDIRMPGMDG 62 V VVDD+ +R VL A G +EA+ + P ++L+D+ MP G Sbjct: 15 VLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAI-RQNPQPFPLVLTDLVMPDGSG 73 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--- 119 + +L K R VI+MTAHS +++A+ A + GA+D++ KPF E AL +A+ Sbjct: 74 IEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKS 133 Query: 120 SHYQEQQQPRNV--QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 S E Q+ R +L+ P+ + +G + AMQ + +I +++ + +VL+ GESGTGKE V Sbjct: 134 SIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERV 193 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S RA PF+ +N A+P+ L+ESELFGHEKG+FTGA G F +ADGGTL Sbjct: 194 ARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREADGGTLL 253 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++P +Q +LLRVL + + VG A + VDVR++AAT++++E V++G+FR+DL Sbjct: 254 LDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDL 313 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVIR+ LPPLRER DI RLA FL+ A ELG + + L + AL ++PGNV Sbjct: 314 YYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYSFPGNV 373 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +A G + + DLP S VA ++ S A LLAQ Sbjct: 374 RELENMMERAVALAGGPTIGLGDLP-----SAVAGLSA-----SPAPLLAQLPPEGC--- 420 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 L E E+ER L+ AL T G ++ AA+LLG +L +L + Sbjct: 421 ---ALDEVIGEVERRLILQALERTGGVRKAAAKLLGVSFRSLRYRLAK 465 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 183/471 (38%), Positives = 268/471 (56%), Gaps = 34/471 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP---DVLLSDIRMPG-MD 61 + +VDD+ +IR L R L C E V EAL ++++D++MPG D Sbjct: 40 LLIVDDEPNIRSGLARGLEK---ICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGDRD 96 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL L+ I+QR P I++TA+ ++ AV A ++GAFD++ KP D++ V +A H Sbjct: 97 GLELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAAEH 156 Query: 122 YQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +Q + + +++ G T IG Q++ I +++ + +VL+ GESGTGKEL+ Sbjct: 157 HQLRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKELI 216 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S R APF+A+N+ A+P+ L+ESELFGHEKG+FTGA+ + G FEQA GGTLF Sbjct: 217 ARAVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGTLF 276 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI ++P Q LLRVL GQ+ RVGG ++ + RI++AT+Q + V++G FREDL Sbjct: 277 LDEITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFREDL 336 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLN+I + +PPLR RREDIP L HFL+ K + PE L++ WPGNV Sbjct: 337 YYRLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPGNV 396 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQL N L V + +L DLP EL + A+ST AL++ Sbjct: 397 RQLRNHIERLVVTVPAETILAADLPCELHQQNAAQST------------------ALKT- 437 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E E+T + AL + H+++ A+ LG TL K+ + Sbjct: 438 ----LVEITESAEKTGIELALSAKKSHREQTAKALGISVRTLHYKMNRYNL 484 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 311 bits (798), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 176/463 (38%), Positives = 265/463 (57%), Gaps = 3/463 (0%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V DD++ IR L G + + E L PD+ L D+ + DGL+ Sbjct: 4 ILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDGLSY 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++I + V++M+ H +D AV A + GA DY+ KPF +D + + A+ + Sbjct: 64 LQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLRGLE 123 Query: 126 QQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 ++ R ++ +++G++PA++ + ++ R++ + VLI GE+GTGKELVA +LH Sbjct: 124 RENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSLHEG 183 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S R PF+ +N AAIP+ LIESELFGHEKGAFTGA + R G+FEQA GG LFLDEIGDM Sbjct: 184 SVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEIGDM 243 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 L Q R+LRVL + Q R+GG + VDVR++AAT+++L + +FREDLF+RLNV+ Sbjct: 244 ALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRLNVV 303 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +PPLRER DIP L HF+++ R+ G KL E AL WPGNVR+L+NT Sbjct: 304 SIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGNVRELKNTV 363 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN--LL 422 L ++A G + ++DL + +T + + + SG + L Sbjct: 364 ERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPDLPL 423 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 EA+ ER + L +G+ AA+ LG R +L R++++ Sbjct: 424 REARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQ 466 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 179/472 (37%), Positives = 274/472 (58%), Gaps = 27/472 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G+V ++DD+++IR L+ L G T +G + L +A+ D++L D +P +G+ Sbjct: 20 GVVLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGI 79 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +LK+I+ R + VI++TA+ ++ AV+A Q GA +++ KP+D ++ +A V AI+ + Sbjct: 80 EILKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRR 139 Query: 124 EQQQPRNVQLNGPTT------DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +++ N+QL +IIG++ M +F ++ +++ S +VL+ GESGTGKEL+ Sbjct: 140 VEEE--NLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELI 197 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +S R F+ +N ++P DL+ES LFGH KGAFT A ++G FE ADGGTLF Sbjct: 198 AKAIHMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLF 257 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG M ++ Q ++LRVL D +F +GG ++VDVRIIAAT+ +L Q V+EGKFREDL Sbjct: 258 LDEIGTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDL 317 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI + LPPLR+RR D+P L HF++ E + PE L W GNV Sbjct: 318 FYRLNVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNV 377 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V+A G + I LP + + S + +PD+ Sbjct: 378 RELENVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDAS--------------- 422 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E + ER ++ L ++ EAA +TL +K+K L +E Sbjct: 423 ----LFEIMEDCERRIIVDMLEKVGWNQTEAAEKFRIPLSTLNQKIKRLSIE 470 >UniRef50_Q3B305 Two component transcriptional regulator, Fis family n=9 Tax=Chlorobiaceae RepID=Q3B305_PELLD Length = 492 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 178/473 (37%), Positives = 262/473 (55%), Gaps = 14/473 (2%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ V + DDD + R + + G T +NG E +E++ ++PDV+L DI MPG D Sbjct: 24 RKNTVLIADDDETSRRIFSHFVRKMGYTALVVQNGMECIESITEQSPDVILLDINMPGKD 83 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G ++ +K H PVII+TA D+ AV + GA++YL KP +ID ++ +++ Sbjct: 84 GFEVMLHMKTEHIKTPVIIITASHDIPQAVKCIKLGAYEYLTKPLNIDRLEIVMRNSLAE 143 Query: 122 YQEQQQPRNVQLNGPTTDI----IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q + +N++ T DI IG + A++ ++ + ++VLI GESGTGKEL Sbjct: 144 SALQIEVKNLKKELRTRDIFQHIIGRSRAIKASMEQAVQVMETDLNVLILGESGTGKELF 203 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H+ S R PF+++N AAI L +S LFGH KG+FTGA T G FEQAD GT+F Sbjct: 204 AQAIHQGSRRNCGPFVSVNCAAISSTLADSILFGHAKGSFTGAATDHTGFFEQADKGTIF 263 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM D+Q ++LR + + + RVG VD R+I+AT++N ++ +FREDL Sbjct: 264 LDEIGDMEADIQAKVLRAIQERKIRRVGEKHERSVDFRVISATNRNFADAIRSNQFREDL 323 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RL + LPPLRER EDIP LARHFL A +E E A WPGN+ Sbjct: 324 YYRLEEFPLFLPPLRERPEDIPLLARHFLDEFASANNIEKLSFTDEALAGSKEYHWPGNI 383 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N + V G EV + + + L A R+ +G Sbjct: 384 RELKNAVQRAAVTRKGDEV-------DSLRPILKHGNGSTAGHPASALAGSAAQRS--AG 434 Query: 418 H-QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 H ++ S + E ER + A + + G+ + AR+LG GR TL RKL + G+E Sbjct: 435 HGPDMQSYSLEEHEREAILKAYKASNGNLTKTARMLGIGRATLYRKLDKFGLE 487 >UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8J7L3_ANAD2 Length = 484 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 192/468 (41%), Positives = 259/468 (55%), Gaps = 27/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VV+DD + +L R L G A L+ L + DV+LSD+RMPGMDG L Sbjct: 18 VLVVEDDPRLLDILTRHLDRMGYAVRGAGGAAAALQLLEAAPADVVLSDVRMPGMDGRTL 77 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS----H 121 L +++ RHP VI+MTA +D AV A Q GA+ Y+ KPF ++ A++ A H Sbjct: 78 LAEVRARHPDAKVILMTAFGSVDDAVEAMQAGAYSYVVKPFKVETVAAVLRNAARELELH 137 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R V +IG + M++V R + + +VL+ G SGTGKE+ A A+ Sbjct: 138 REVDGLRRAVAERFSADRLIGGSARMREVRRALREAAEVGATVLVTGRSGTGKEMAARAI 197 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H PRA PF+A+N AAIP+ L ES +FGH +GAFTGA + G EQ+ GGTLFLDE+ Sbjct: 198 HYGGPRAAGPFVAVNCAAIPEPLFESAMFGHRRGAFTGAVESQAGFVEQSSGGTLFLDEV 257 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++P Q +LLRVL +G+ VG PVKVD+R++AA +++LEQ V +G FREDLF+RL Sbjct: 258 AEIPPAQQAKLLRVLQEGEVTPVGAARPVKVDLRVVAAANRDLEQMVAKGAFREDLFYRL 317 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+R+ LP L ER ED+P LA H L AR GV A PE AAL R WPGNVR+L Sbjct: 318 NVLRIELPTLAERAEDVPALAEHLLLDIARGHGVPALGFTPEALAALERHRWPGNVRELR 377 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFES-TVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N + A G+ + DLP + + T AE+ P LA Sbjct: 378 NAVERALLAARGRRIDAADLPAAVVRAPTGAEAVP--PPGEGGLTLA------------- 422 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER + L ++ AARLLG R TL K++ G+ Sbjct: 423 -------EVERAHVEKVLAMVGWNRSLAARLLGIDRRTLFTKIQRYGL 463 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 269/468 (57%), Gaps = 28/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD +R +++ L GAG T E G E L A + + D++M MDG+ L Sbjct: 6 ILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMVL 65 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---SHY 122 L+++ P LPVII+TA+ + AV A ++GA+D++ KPF+ + + +E+A+ S Sbjct: 66 LEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALEVGSLR 125 Query: 123 QEQQQPRN-VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 E ++ R V+ +II + MQ V + +++ + +V + GESGTGKEL+A L Sbjct: 126 MEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKVL 185 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R++ PF+A+N AIP+ L+ESELFGH KGAFTGA+ ++G +QA+ GTLF+DEI Sbjct: 186 HLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFMDEI 245 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++ +Q +LLRV D +FY VGG PVKVD R++AAT+Q+L + +Q+GKFREDL++R+ Sbjct: 246 AELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYRI 305 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +VI V+LPPLRER EDIP LA HFLQ + P+ L WPGNVR+L Sbjct: 306 HVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVRELA 365 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V+A + + L E V++S +++ P Sbjct: 366 NVVERAVVLAREGNICAEHLLLE--REAVSDSGTELPP---------------------- 401 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L+ A+ E ER L L T+G+ AA G R + L++ ++ Sbjct: 402 LTAARDEFERAYLIQVLHSTKGNVSRAAAKAGRYRAEFYKLLRKYDLD 449 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 173/461 (37%), Positives = 262/461 (56%), Gaps = 27/461 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VDD S VL+R L G T E L L D++++D RMP GL L Sbjct: 7 ILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMPQATGLDL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++ +++ H + ++++T + + AV A + GA +YLPKPF +E ++R + + Sbjct: 67 IRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRIVERVHRR 126 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + + V++ T I+G +P MQ VFR IG+ + ++ +VLI+G+SGTGKELVA A+H HS Sbjct: 127 RALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVARAVHYHS 186 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R APF+ +N AAIP L+ESELFGH KGAFTGA R G FE A+GGT+FLDEIGD Sbjct: 187 DRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFLDEIGDAS 246 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 ++Q +LLR+L ++ +VG VD RI+AATH++L++ V++G FREDL++RL+V+ Sbjct: 247 PNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLYYRLHVVD 306 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +P L ER +DI L +FL ++ + + E AL +WPGNVR+LEN + Sbjct: 307 IPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVRELENLIQ 366 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + V+ + + DLP + ++ + + DR+L Sbjct: 367 RMVVIVDHDPIEVTDLPPNM---------------RFSLPMEERVDRSL----------- 400 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 E+E+ + L T +K AA +LG R TL KLK + Sbjct: 401 -AEVEQEHIKNVLIMTDNNKTRAAEILGINRKTLREKLKRM 440 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 269/464 (57%), Gaps = 12/464 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +++DD++ + +L AL G ++ E + D++L+D+ +PGM G+ Sbjct: 5 ILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGMSGVEA 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 + Q+++ P +I+MTA+S + A+ A + GA+D+ KPF + E +V RA+ + Q Sbjct: 65 IPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRALEKRRLQ 124 Query: 126 QQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ ++ + P IIG++ M+ V ++ +++ +VLI GESGTGKELV+ L Sbjct: 125 KEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKELVSDTL 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 S RA APF+ +N AAIP+ L E+ELFGHEKGAFTGA + + G+FE A GGTL LDEI Sbjct: 185 RALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGATSAQPGKFELAHGGTLLLDEI 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMP +Q +LLR + + Q R+GG PV V+VRIIAAT+QNL + V FREDL++RL Sbjct: 245 GDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFREDLYYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V + LPPLR+R+EDIPRLA H L+ LG+ + AL WPGNVRQL Sbjct: 305 GVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWPGNVRQLA 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + A G+ + QD+ L V TS + + A A+ LR Sbjct: 365 NLLERAAISAQGR-ITAQDIAAAL---AVQNGTSPQPCTAQSPHDAPAAEDCLRMP---- 416 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 L E ++ER LL ALR +G ++ AA LLG + KL++ Sbjct: 417 LRETLHQMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQK 460 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 187/476 (39%), Positives = 268/476 (56%), Gaps = 38/476 (7%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V +VDD+ + +L+ L G + AE E L + DV+++D+ M GM GL Sbjct: 3 GRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH-- 121 L ++I Q P LPVI++TA LD A SA + GA+D++ KPF++D VERA+ H Sbjct: 63 DLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHRA 122 Query: 122 --YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + ++ R V I+ +P M+ VF ++ R++ S S+LI GESGTGKELVA Sbjct: 123 LREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+ S R++ F+A+N AA+P L+ESELFGH +GAFT A R G F +A GGTLFLD Sbjct: 183 AVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++P+ +Q +LLR L + VG + VDVR+IAAT+++LE ++E +FREDL++ Sbjct: 243 EIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R+NV+ V LPPLR R D+ LA+HFL+ A + L L AWPGNVR+ Sbjct: 303 RINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N +A + + DLP ++ R R H Sbjct: 363 LQNCIERAVALARYDHITVDDLPEKI--------------------------RTYRRSHV 396 Query: 420 NLLSEAQP-------ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L+S P E+ER + L G+K +AA++LG+ R TL RKL+ GM Sbjct: 397 -LVSSDDPTELVPMEEVERRYILRVLEVVGGNKSQAAQILGFDRATLYRKLERYGM 451 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 173/468 (36%), Positives = 270/468 (57%), Gaps = 33/468 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VV+D+ R +L L G G + E E L + V+L D+ +P +G+ L Sbjct: 3 VLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGMEL 62 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK I++ + V+++T H + AV A + GA+D+L KP + E +++A+ + Sbjct: 63 LKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRGIK 122 Query: 126 QQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + +L+ + E+ AM++V + R++ S VLI GESG GKE++A + Sbjct: 123 RENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIASII 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR+S RA P +ALN+A+IPK+LIE+ELFG+EKGAFTGA++ ++G FE ADG TLFLDEI Sbjct: 183 HRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+M + +Q +LLR + +FYR+GG ++ +VRII AT+++L + V+ G+FREDL++RL Sbjct: 243 GEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ +++PPLRERREDI LA HFL + R+ K E +LT W GNVR+L+ Sbjct: 303 NVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVRELK 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + + G + +D+ LF T Q S+ T+ Sbjct: 363 NIVERAVLFSDGDRIDSEDISC-LF-------THQESKKSFKTI---------------- 398 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ER +T L+ +K++A+ +LG TL RKL+ G+E Sbjct: 399 -----KDVEREYITEILKQVNFNKRKASEILGIPLRTLYRKLESYGIE 441 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 190/459 (41%), Positives = 261/459 (56%), Gaps = 32/459 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD S+ +L L+ G TT +G E L LA D+++SD+RM MDGLAL Sbjct: 9 LLLVDDDPSLLKLLGMRLSSEGFRVTTAASGQEALRLLARDPIDLVISDLRMDEMDGLAL 68 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +I++R P LPVII+TAH + AV+A QQG F +L KP D D + RAI Q Sbjct: 69 FSEIQRRQPGLPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDA----LYRAIDDALAQ 124 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 P+ + + +P M + +++S +SVLING+SGTGKEL+A A+HR S Sbjct: 125 SMPQGGD-DAWRQAFVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKELLARAIHRAS 183 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 PRA FIA+N A+P+ L+ESELFGH KGAFTGA + R+G F+ A GGTLFLDEIGDMP Sbjct: 184 PRAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAAGGTLFLDEIGDMP 243 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LLRVL + + +G + +DVRII+ATH+NL + ++ G+FREDLF+RLNV+ Sbjct: 244 LTLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGEFREDLFYRLNVVS 303 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + LP L +R EDIP LA H L+ AA + AL +WPGNVRQL N Sbjct: 304 LRLPALNQRPEDIPLLAAHLLRQAAERHKPLVRSFSSGAMKALMSASWPGNVRQLVN--- 360 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + E VA +T+ + ++ Q + AL + EA Sbjct: 361 -------------------VIEQCVALTTAPVIGEALVEQALQGENTALPT-----FVEA 396 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + E L L+ T+G+ AAR+ G R + L Sbjct: 397 RHHFELHYLRKLLQITKGNVTHAARMAGRNRTEFYKLLS 435 >UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLR0_PLALI Length = 555 Score = 310 bits (795), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 198/525 (37%), Positives = 272/525 (51%), Gaps = 60/525 (11%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 Q V +VDD+ +I W L R G T T E LE ++ DV+ D+R+PG Sbjct: 30 CQMSHVLIVDDEPAICWGLARLCRQLGCTSTIAATAEEALECSRRESFDVVFLDVRLPGK 89 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI- 119 GL +L+ I+Q+ +I+MTA+ L AV A ++GAF+YL KPF + L+ER I Sbjct: 90 SGLEILETIRQQSAFPRIIVMTAYGQLSTAVDAVRKGAFEYLVKPFSLSHVERLLERIIP 149 Query: 120 -----SHYQEQQQPRNVQLN----------------GPTTDIIGEAPAMQDVFRIIGRLS 158 S +Q LN ++G +P MQ+VFR I +S Sbjct: 150 ATNAASAGTDQAADSTPSLNNAQKLDENRFELKPHEAKVNQLVGSSPVMQEVFRQIALVS 209 Query: 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218 S V I+GESGTGKEL A A+H +S R K P + +N+AA+ L ESELFGH KGA+T Sbjct: 210 ASEACVHIHGESGTGKELAARAIHHYSGREKGPLVPVNLAALNPALAESELFGHVKGAYT 269 Query: 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIA 278 GA+ R+G F+QA GGT+FLDE+ D+P +Q +LLR L + + + VG P +VD R+I+ Sbjct: 270 GADLSRRGVFDQAAGGTVFLDEVADIPPALQVKLLRALEEREIWPVGADQPHRVDFRLIS 329 Query: 279 ATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFL-QVAARELGVEA 337 AT+QNL V+ G+FR DL++RL ++ LPPLR+R DIP LARHFL QVA + +E Sbjct: 330 ATNQNLLDAVRSGQFRHDLYYRLVTFQLELPPLRDRVGDIPDLARHFLRQVAPKRSHLE- 388 Query: 338 KLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGEL------------ 385 E AAL W GNVR+L N +M+ LP + Sbjct: 389 --FTTEFLAALQERPWHGNVRELRNAIEHALIMSPVASPAPWHLPAAMAPLEVPPGAASQ 446 Query: 386 -------FESTVAESTSQMQPDSWATLLAQWADRALRSG--HQNLLSEAQPELERT---- 432 F + + ++ + D + QWA L+ NL EA P+LE Sbjct: 447 VNSAASPFHQAIPTAETKGEQDPLTVAVRQWAKTRLQEAKLQANLAIEAAPQLEDAGLHA 506 Query: 433 ---------LLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L T L + + EAARLLG R TL RKL+E G+ Sbjct: 507 RFLAQAEAELFQTILHQCRQNMSEAARLLGIHRTTLKRKLEEFGL 551 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 310 bits (795), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 184/473 (38%), Positives = 270/473 (57%), Gaps = 38/473 (8%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+R V +VDD+ +L++ L G + + L + DV L DI M GM Sbjct: 1 MRRCRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGLALL++ K+ P L +I++T ++ +D A+ A ++GA+DYL KP E ++++A+ Sbjct: 61 DGLALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALD 120 Query: 121 HYQEQQQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q N +Q +IIG + A+ + +I R+S SS+ VLI GESGTGKEL Sbjct: 121 RKKLQDYSNNLIETIQRTNKKREIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA+ALH HS RA PF+ +N +AIP L+ESELFGH KGAFTGA ++G E AD GTL Sbjct: 181 VANALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM +Q +LLR L G+F VGG K +VR++AAT+ NLEQ ++EG+FRED Sbjct: 241 FLDEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+V+ +++PPLRER D LA +FL+ + + K L E E L +PGN Sbjct: 301 LYYRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSK-----KKLSKEAEMFLLNYTFPGN 355 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N +++ ++ P + F E+ S+ Sbjct: 356 VRELANLIERGILLSKDNDL----YPNDFF---ARETYSK-------------------- 388 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 N+ S A ++E+ + L T +K EAA++L G TL RK++E ++ Sbjct: 389 --NNMKSLALQDIEKEHICQVLEKTGWNKTEAAKILKIGLRTLYRKIEEYKLQ 439 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 310 bits (795), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 177/468 (37%), Positives = 265/468 (56%), Gaps = 27/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ R +L L+ G T + E + + P+++L+D+++ +G+ + Sbjct: 4 LLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNGIEI 63 Query: 66 LKQIKQRHPMLP-VIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA---ISH 121 L + + P P VI++TA + +AV+A +QGAFDYL KP D + + + +A ++ Sbjct: 64 LNSLPE-EPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNL 122 Query: 122 YQEQQQPRNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +E R D IIG++ M V I+ + + ++ +VLI GESGTGKEL+A A Sbjct: 123 IKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARA 182 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +SPR PFIA+N AAIP LIESELFG+E GAFTGANT + G E AD GTLFLDE Sbjct: 183 IHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDE 242 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 I ++PL Q++LLRVL D + ++G KVDVRIIAAT++NL ++V++ KFREDL++R Sbjct: 243 IAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYR 302 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L VI V +PPLRER+EDIP L F++ ++E G + + AL +WPGN+R+L Sbjct: 303 LKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIREL 362 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 E+ ++ ++ D+ EL T PD Sbjct: 363 ESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGIN---------------- 406 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELE+ L+ AL + +AARLLG +T +LK+ G+ Sbjct: 407 -----YEELEKELIKKALIKSNFVIAKAARLLGMSYDTFWYRLKKFGL 449 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 181/472 (38%), Positives = 271/472 (57%), Gaps = 30/472 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 + +G + VVDD+ S+R L + G T E+ E L +A +T D+ L DI+M G Sbjct: 3 VSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMRGT 62 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L +++ + P L VI+MT ++ ++ AV+ + GA+DY+ KP D +E LV +A++ Sbjct: 63 DGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKALA 122 Query: 121 HYQEQQQPRNVQLNGPT-----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 H + +Q+ NV+L D++ + AM+ + I ++ + +VLI GESGTGKE Sbjct: 123 HKRTEQE--NVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 +VA A+H S R P + ++ A+ + L+ESELFGHEKGAFTGA ++G+FE A+GGT Sbjct: 181 VVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGD+ L QT LLRVL + + RVGG P+KVD RI+AAT+++LE+ ++EG FR Sbjct: 241 VFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRP 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV R+ LPPLR+RREDIP L HF + A ++ + L + WPG Sbjct: 301 DLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN V+A E+ D ++ + ST+ Sbjct: 361 NVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNG------------------- 401 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 +G L ++E+ + L T ++ AA +L R TL K+K G Sbjct: 402 TGTPKTLE----DIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 310 bits (794), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 277/468 (59%), Gaps = 28/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD++ R +L L G T +G + + S+T V+L D++MPGMDGL+ Sbjct: 7 ILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGMDGLSF 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 L+ K+ P + +I++T H ++ A+ A ++GA+DYL KP++++E L+ +A+ Q Sbjct: 67 LQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVEKQQLT 126 Query: 124 -EQQQPRN-VQLNGPTT-DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 E QQ R + NG TT I+ E+P +++V R++ + VL+ GESGTGK+++A Sbjct: 127 EENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKDVIARL 186 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 ++ +S RA F+ +N+ AIP+ ++ESELFGHEKGAFTGA ++G E A GTLFLDE Sbjct: 187 IYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGTLFLDE 246 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GD+P +Q +LLR L G+F R+G KVDVRIIAAT+ +LE++V+EG FR DL+ R Sbjct: 247 VGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRSDLYFR 306 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+V+ + +PPL +R EDI L+ FL R+ V K L + +AAL ++PGNVR+L Sbjct: 307 LHVMDITIPPLTQRSEDILPLSAFFLNRLKRKYPV--KPLSVKAQAALLAYSFPGNVREL 364 Query: 361 ENTCRWLTVMAAGQEVLIQDL-PGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 + V+A G+E+ +DL P E QP + + +DR L + + Sbjct: 365 AHMIERAVVLAKGEEIDDKDLFPHE-------------QP-----VPSNPSDRKLTTSAE 406 Query: 420 NLLSEA--QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 EA +ER + L +Q +K + A LG L RK++E Sbjct: 407 TGEEEAFLLKNVEREHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIEE 454 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 310 bits (794), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 179/468 (38%), Positives = 268/468 (57%), Gaps = 32/468 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ + VL L G T ++G L L D+L++D+++P + GL + Sbjct: 7 ILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPDITGLDI 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 L+Q+K P LPV+++TA+ + AV A + GAF+YL KP D DE + LV+ Q Sbjct: 67 LEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFERSQLL 126 Query: 124 EQQQPRNVQLNGPTT--DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 E+ Q QL + +++G++ AMQ++F +I ++++ +VL+ GE+GTGKELVA + Sbjct: 127 EENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGI 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H PF+ ++ AA+P+ L+ESELFGH +GAFTGA ++G+ E A GGTLFLDEI Sbjct: 187 HYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTLFLDEI 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++PL +Q + LR L + + R+G KVDVRIIAAT+++LE + G++REDLF+RL Sbjct: 247 GELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFYRL 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + +PPLRERR+DIP L HFL + G + + E WPGNVR+LE Sbjct: 307 NVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPGNVRELE 366 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFE-STVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N V+ G + + LP +L E S A ST + N Sbjct: 367 NVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGV----------------------N 404 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L+ E+E+ L+ L T+ ++ AAR LG R L K+K G+ Sbjct: 405 LM-----EMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_C1SI10 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI10_9BACT Length = 461 Score = 310 bits (794), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 169/465 (36%), Positives = 266/465 (57%), Gaps = 18/465 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V ++DDD SI + ++R+L+ + T ++ ++ L D + D ++ +GL + Sbjct: 11 VLLIDDDESICYSIKRSLSKSYEVFTALDS-SKAYAILKDIEIDFIFLDYQLNDENGLDV 69 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK I+ + +PV ++TAH + + A + GA D+L KP D + +E+ + Sbjct: 70 LKTIRSTNENVPVTLLTAHGTSEILIDAIRYGAVDFLSKPVDACKLTGAIEKYAGCFSLS 129 Query: 126 QQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 P + T + +I E+ AM++V + + +S + VLI GESGTGK++VA +H Sbjct: 130 HDPEYFERLPETLNSELVIAESAAMKEVLKKVAVISSTRSPVLITGESGTGKDVVAKLIH 189 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 R+SPR PFI++N AAIP+ L+ESE FGH KG+FTGA +QG+F+ ADGGT+FLDEIG Sbjct: 190 RYSPRKDKPFISINSAAIPEHLLESEFFGHIKGSFTGAVANKQGKFQAADGGTIFLDEIG 249 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DMP+ +Q +LL VL DG R+G + KVD+RII+AT+++++Q V++G FREDLF+R+N Sbjct: 250 DMPISLQGKLLHVLQDGVIQRIGDNSFQKVDIRIISATNRSMKQIVKDGLFREDLFYRIN 309 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 + +PPLR R++DI L H+L++ A E+ + + + WPGNVR+L+N Sbjct: 310 AFEISIPPLRLRKDDIWPLCIHYLKLQAAEINKDITFIEKSVREVFEKQKWPGNVRELKN 369 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 T L V + L D E S+ S + D ++ +NLL Sbjct: 370 TMAKLAV-NTNSKALRADTVMEALGSSYGTSD-------------ELLDYFMKYNGENLL 415 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 ++ ELE L+ + + G+ AA+ LG R TL K+K+L Sbjct: 416 QKSVDELESNLINRCIADSAGNHTLAAKKLGISRATLYDKIKKLN 460 >UniRef50_C1ZBV1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=2 Tax=Planctomyces RepID=C1ZBV1_PLALI Length = 569 Score = 310 bits (793), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 187/524 (35%), Positives = 288/524 (54%), Gaps = 61/524 (11%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V V+DDD +I + RAL + LEA+ + P V+L D+ +P + G+ L Sbjct: 34 VLVIDDDRTILLQISRALEPLNVQVEGVTTAQAGLEAIRTLKPSVVLLDLVLPQISGMEL 93 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++IK LPVI +TA + ++A+ A GA+DY+ KP + + LV +A+ + Sbjct: 94 FQRIKDLDRRLPVIFITADAASESAIGAISMGAYDYVAKPLHLAQLQQLVSKALETRRLM 153 Query: 126 QQPRNVQLN-----GPTTDI-IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 P V + G D +G +P M +VF+ IGR+++ +++VL+ GESGTGKELVA Sbjct: 154 SVPVAVSVTDDDKAGDQGDFFVGRSPRMLEVFKEIGRVAQQNVTVLVRGESGTGKELVAR 213 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+++ R+ PF+A+N AA+P L+ESELFGHEKGAFT A+ R G+FEQ +GGTLFLD Sbjct: 214 AIYQFGSRSTRPFMAVNCAALPDTLLESELFGHEKGAFTSADRRRIGKFEQCNGGTLFLD 273 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GDM Q ++LR+L + +F RVG ++ +VR++AAT++ LEQ VQ+G+FR DLF+ Sbjct: 274 EVGDMSPLTQGKVLRLLQEQRFERVGSNDTIETNVRLVAATNRPLEQMVQDGRFRADLFY 333 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGV-EAKLLHPETEAALTRLAWPGNVR 358 RLNV+ + LPPLRER EDIP L ++ A REL + + L P+ A L WPGN+R Sbjct: 334 RLNVVTISLPPLRERVEDIPLLLKYSFSRARRELDKPDVEGLSPDALALLMAYPWPGNIR 393 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVA---EST--------------------- 394 +L++ R + G ++ LP + + A E+T Sbjct: 394 ELQSVVRQCLLKCTGPVIVPDFLPVAILDYKAAPHGEATNRVFFPENTPASINNDPSSTA 453 Query: 395 -----SQMQPDSW-------------------------ATLLAQWADRALRSGHQNLLSE 424 SQ+ DS ++ + Q + L++G NL +E Sbjct: 454 GVRPLSQLPEDSSIAGVAPIPHGIPQTHTQASGMSELPSSDIGQLIEARLQAGSTNLYAE 513 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A +E+ LLT L+ +Q ++ +AA +LG R + ++ G+ Sbjct: 514 ALEMMEKYLLTRVLQASQANQSKAAEILGITRGKVRDRIAAFGI 557 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 197/479 (41%), Positives = 276/479 (57%), Gaps = 28/479 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 RG + VVDD ++R L T G E L LAS + D+LL+D++M MDG Sbjct: 10 RGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMDG 69 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL++ + P L VI+MTA +++AV A + GA+DY+ KPF E VERA+ Sbjct: 70 LTLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERA 129 Query: 123 QEQQQPRNVQLNGPTTD---------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 + Q+ N+ TTD ++G + AM+++ + R+++S +VLI GESGTG Sbjct: 130 RLQRDVDNL-----TTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTG 184 Query: 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 KELVA ALH HS R F+ +N AAI + L+ESELFGH KGAFTGA R+G FE+ADG Sbjct: 185 KELVARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADG 244 Query: 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 GTLF+DE+ + Q++LLR L +G+ RVG ++VDVRI+AAT++++E V++ +F Sbjct: 245 GTLFIDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRF 304 Query: 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVA-ARELGVEAKLLHPETEAALTRLA 352 R+DL++RLNV+ + +PPLRER ED+P LA HFL+ A AR K L + L Sbjct: 305 RQDLYYRLNVVALRVPPLRERLEDVPALAEHFLERANAR--SPNPKRLSAAAVSHLMSYG 362 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADR 412 +PGNVR+LEN +A G E+L +D P T A T S A L Q Sbjct: 363 FPGNVRELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTP-----SVAFLDGQGGAL 417 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARL---LGWGRNTLTRKLKELGM 468 + L++ E ER +T AL + H + AR+ LG TL RK+K L + Sbjct: 418 GRNASAGPTLAQVVEEAERHAITQAL---ERHGVDLARVADELGVSSTTLWRKMKRLNL 473 >UniRef50_B8DJ26 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=B8DJ26_DESVM Length = 542 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 166/374 (44%), Positives = 234/374 (62%), Gaps = 4/374 (1%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G + +++DD++ + +L AL G TT + + L D++LSD+ +PGM G+ Sbjct: 3 GHILLIEDDTAFQSMLREALEERGYRVTTAGRAEDGIALLRGGGFDLVLSDVMLPGMSGV 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + ++ P +I+MTA+S + A+ A + GA+D KPF + E ++ RA+ Sbjct: 63 EAIPHLRSAAPGTDIIVMTAYSTRELALEAVKLGAYDVFSKPFSLKEMDIVIRRAMEKRG 122 Query: 124 EQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q + +++ +GP + IIGE+ A+ +V +I +++ +VLI GESGTGKEL + Sbjct: 123 LQAEIAALRDSLRRDGPASRIIGESRAIMEVKALIEKVAPLDTTVLIMGESGTGKELASD 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 + SPRA APF+ +N AAIP+ L E+ELFGHEKGAFTGA T + G+FE A GGTL LD Sbjct: 183 TIRALSPRAAAPFVKVNCAAIPEHLFENELFGHEKGAFTGAATAQPGKFELAQGGTLMLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPL +Q +LLRV+ Q R+GG P+ +DVR+IAAT+QNL RV+E FREDL++ Sbjct: 243 EIGDMPLAIQPKLLRVVEQKQVERLGGRKPISLDVRLIAATNQNLADRVREKAFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V VHLPPLR R+EDIP LA+H ++ LG+ L P AAL WPGNVRQ Sbjct: 303 RLGVAVVHLPPLRSRKEDIPLLAQHVVRRLQGTLGLPVHGLTPAAVAALCSYDWPGNVRQ 362 Query: 360 LENTCRWLTVMAAG 373 L N + A G Sbjct: 363 LANVIERAAIAAEG 376 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 264/466 (56%), Gaps = 25/466 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V++DD +R +L L +G + +G E L+ + +V+L D+RMPGMDG+ + Sbjct: 12 ILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMPGMDGVEV 71 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+Q++ + VI+ T H ++ AV + GA+DYL KP +DE ++++A + + Sbjct: 72 LRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKANEKNRLR 131 Query: 126 QQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + N++L D I+G++ +Q V + R + VLI GESG GKEL A A+H Sbjct: 132 LENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKELFARAVH 191 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA PF+ +N + + ESELFGH +GAFTGAN R G FE AD GTLF+DEI Sbjct: 192 DASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGTLFMDEIS 251 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +MPLDVQ +LLR+L G F R+GG + VDVR + A+++ LE V G+FREDLFHR+N Sbjct: 252 EMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFREDLFHRIN 311 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 ++ +++PPLRER EDI L+ +FL+ +A E G + E AAL +WPGNVR+L N Sbjct: 312 LLPINIPPLRERPEDIIPLSYYFLK-SANESGSANWEISEEAMAALCAYSWPGNVRELRN 370 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 T R +++A Q + LP P A A +G ++L Sbjct: 371 TIRRASILATDQIISSDLLP--------------FSPPKTAPSFAV-------TGLPDVL 409 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +ER + L +G+K +AA++L R TL KL+ G+ Sbjct: 410 PLPLWVVERDYIQKVLEKLEGNKSKAAKVLEIDRKTLYTKLERYGL 455 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 168/464 (36%), Positives = 273/464 (58%), Gaps = 28/464 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ +R +L R +A G + L+ L+ DV+L D+++P G+ L Sbjct: 62 ILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGVEL 121 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALV----ERAISH 121 K IK+++P +I++TA+ ++ V A + GAFDY+ K D + L+ E+A Sbjct: 122 AKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAALA 181 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + Q R ++ T+IIG++ ++ + +++ + ++L+ GE+GTGKE+ A A+ Sbjct: 182 RRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQAI 241 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+ S R F+A+N +A +DL+ESE+FGH+ GAFTGA R+G FE+A GT+FLDE+ Sbjct: 242 HQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLDEL 301 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+M LD+Q +LLRV+ G+F +VG P KV+VRIIAAT+++L ++ G FREDLF+R+ Sbjct: 302 GEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFYRI 361 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +V ++ LP LR+R EDI LA+HF+ ++ + + P AL AW GN+R+L+ Sbjct: 362 SVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIRELK 421 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N ++++G E+ DLP ++ Q P +++SG Q L Sbjct: 422 NVIERAVILSSGTELAPDDLPIDI----------QFHP-------------SVKSGKQ-L 457 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + + +E+ + L HTQG+K EAARLL G TL RK++E Sbjct: 458 SAFSLQSVEKLHIQKVLNHTQGNKAEAARLLEIGIATLYRKIEE 501 >UniRef50_B3DV39 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV39_METI4 Length = 442 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 269/464 (57%), Gaps = 26/464 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDDD + R + + G T + + LE LA +T D++ D+++ G DGL+L Sbjct: 4 ILIVDDDYAFRLAFSKTVRSLGHTVSGTSEVPKALE-LAQQT-DLIFLDLKLKGEDGLSL 61 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+++++ PVII+TA + + A ++GAFD+L KP E ++ERA+S Sbjct: 62 LEEMRKLDKKPPVIILTAFPNSFNTIEAIKKGAFDHLTKPIKKREIQDVIERALSSTSSL 121 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + VQ G ++IGE+ AM+ V + IG + VLI+G++GTGKELVA A+HRHS Sbjct: 122 FSLK-VQSKG-QEELIGESAAMRRVQKFIGFAACCDFPVLISGQTGTGKELVARAIHRHS 179 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PF+ +N AA P+ L E+E FGH KG+FTGA R+G+F +A GGTLFLDEI +MP Sbjct: 180 ARGNGPFVEVNCAAFPEALFETEFFGHTKGSFTGAFKDRKGKFMEATGGTLFLDEIAEMP 239 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LL+ L++ + VG +DVRIIAAT++NL V GKFR+DLF+R+ V++ Sbjct: 240 LTMQAKLLKALSENKIQPVGSETDYPIDVRIIAATNKNLLDLVMGGKFRDDLFYRIQVLQ 299 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + LPPLRER DI LA +F++ + +K L + AL WPGNVRQLEN R Sbjct: 300 IELPPLRERNSDILLLAEYFIE---KYFPGSSKKLTLAAQKALLEYPWPGNVRQLENVIR 356 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + + GQ + + DL L + +P QW A Sbjct: 357 RAGITSRGQLIDVGDLDISL--------PTDKEPGLNKEDFLQWD-----------FFSA 397 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +LE+ L+ AL+ +QG++ EAARLL R+ L K+KE G++ Sbjct: 398 IAKLEKMLIEKALKESQGNRTEAARLLNIHRSLLYLKMKEHGID 441 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 177/478 (37%), Positives = 276/478 (57%), Gaps = 22/478 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + VVDDD+S+R L L G T NG E L+ + +++D+RMPGM Sbjct: 3 MKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGM 62 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ +LK IK+ P PVI++TA+ ++ AV A ++GA D++ KPF +++ +V+ ++ Sbjct: 63 GGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVMA 122 Query: 121 HYQEQQ--QPRNVQ-LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Y+E++ + + V+ + +II E + + + +++S SVLI GESGTGKEL Sbjct: 123 TYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELF 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A L+ HS R PF+A+N AAIP +L+ESE+FG EKGAFTGA + G+FE A+GGTL Sbjct: 183 ARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGTLL 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ +M +Q +LLRV+ + + R+GG P+ VDVRIIA T+ ++ + ++E FREDL Sbjct: 243 LDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA---WP 354 ++RLNVI + +PPLRER+ D+ L +FL+ + + K L L RL WP Sbjct: 303 YYRLNVIPLKIPPLRERKGDVELLGSYFLKKYS---NLNEKPLPVFANGTLKRLNAYDWP 359 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELF---ESTVAESTSQMQPDSWATLLAQWAD 411 GNVR+LEN ++ G V LP L+ + +V+ + + S + + Sbjct: 360 GNVRELENVIERAVLVCGGNVV----LPEHLYLEDQGSVSPAAEEKTSCSLEEVSTDISG 415 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L G E+E+ L+ + L +G+K A+ +LG T+ KL+E M+ Sbjct: 416 IDLSRGMTIW------EMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQEYQMK 467 >UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEK1_RHOVA Length = 335 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 169/329 (51%), Positives = 222/329 (67%), Gaps = 14/329 (4%) Query: 147 MQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIE 206 MQDV+R++ RL + ++VLI GESGTGKELVA ALH + R K PFIA+NMAAIP++LIE Sbjct: 1 MQDVYRVMARLMHTDLTVLITGESGTGKELVARALHDYGQRRKGPFIAINMAAIPRELIE 60 Query: 207 SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGG 266 SELFGHEKGAFTGA GRFEQADGGTLFLDEIGDM ++ QTRLLRVL +G++ VGG Sbjct: 61 SELFGHEKGAFTGAAQRSVGRFEQADGGTLFLDEIGDMLMEAQTRLLRVLQEGEYMTVGG 120 Query: 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFL 326 P+K DVRIIAAT+++LE ++ G FREDL++RLNV+ + +PPLRER ED+P L RHFL Sbjct: 121 RVPIKTDVRIIAATNKSLENQIALGLFREDLYYRLNVVPLRMPPLRERLEDVPDLVRHFL 180 Query: 327 QVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDL-PGEL 385 ++A + G+ +K L E L R WPGNVR+LEN R L+ + + QE++ D+ EL Sbjct: 181 KLAEKS-GLPSKTLTQEAFDRLKRHTWPGNVRELENLVRRLSALYS-QELISADIVDNEL 238 Query: 386 FESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQP---------ELERTLLTT 436 ST + P S L +W + L + P ++E L+T Sbjct: 239 --STHSSPPPLDTPQSGTAKLNEWMEAYLTDYFGGFGDQLPPPGLYDRVLRDVEAPLITA 296 Query: 437 ALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 AL T+G++ +AA LLG RNTL +K++E Sbjct: 297 ALTATRGNQIKAAELLGLNRNTLRKKVRE 325 >UniRef50_Q3JI73 C4-dicarboxylate transport transcriptional response regulator n=90 Tax=cellular organisms RepID=Q3JI73_BURP1 Length = 472 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 192/472 (40%), Positives = 259/472 (54%), Gaps = 45/472 (9%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R V+V++DD+++R +ALA G+ FE+ L AL P ++SD+R+PGM G Sbjct: 34 REAVYVIEDDAAVRLGCSQALALEGIGVREFEDAESALAALKRDPPAAIVSDVRLPGMGG 93 Query: 63 LALLKQIKQRHPM---LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 LALL +K HP +PVI+MT H D+ AV A + GA+D++ KPF D V V RA+ Sbjct: 94 LALLDSMKA-HPRDADIPVILMTGHGDVAMAVGAMRCGAYDFIEKPFHSDRLVDTVRRAL 152 Query: 120 SHYQEQQQPRNV--QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 H + + R++ QL+G ++G APAMQ V +I + +S VLI GE+GTGKE++ Sbjct: 153 EHRKLVIENRSLRAQLSG-ERPLLGSAPAMQRVHALIDAIGPTSADVLIIGETGTGKEVL 211 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH S R PF+ALN AA+P+ + ESE+FGHE GAFTGA R G+FE A GGTLF Sbjct: 212 ARALHAAS-RRTGPFVALNCAALPEAVFESEIFGHEPGAFTGAQQRRIGKFEYASGGTLF 270 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ MPL +Q +LLR L + R+G V VDVR+IAA Q+L+Q +G FR DL Sbjct: 271 LDELESMPLSLQAKLLRALQERSIERLGSNVSVAVDVRVIAAVKQDLKQLAADGLFRSDL 330 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RLNV + LPPLR R +DIP L HFL+ AA + E WPGNV Sbjct: 331 YFRLNVASIELPPLRRRTDDIPELFSHFLRAAAVRFEKPEPVWTQEDMMRWQLYDWPGNV 390 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+NT + G E + P F+S + S Sbjct: 391 RELKNTAERFCL---GLEDGLPRSPAG-FDSLASRMVSA--------------------- 425 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ER + ALR+ G +AA LLG R TL K+ G++ Sbjct: 426 ------------ERAYIEEALRNAGGQVAKAAELLGLPRKTLYDKITRHGID 465 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 269/471 (57%), Gaps = 12/471 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DDD I +L+ G + L+ + ++ P+V + DI MPG G + Sbjct: 5 LLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMPGKSGFQV 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS----- 120 L++ K+ P L +I+ T H A+ A + GA+DY+ KPFD ++ + V++A+ Sbjct: 65 LQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQKALECNLLN 124 Query: 121 -HYQEQQQPRNVQLNGPTTDI-IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++L DI IG + M ++++++G+++ S +VLI GESGTGKEL+A Sbjct: 125 RKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESGTGKELLA 184 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A++ +S R PF+A+N AA+P+ L+ESELFGHEKGAFT A+ R G+FEQ +GGT+FL Sbjct: 185 RAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQCNGGTIFL 244 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG+M L Q +LLRVL +F RVGG ++VDVRIIAAT+++L V+E FR DLF Sbjct: 245 DEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEKTFRMDLF 304 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL V+ LPPL++R EDIP L F++ +R+ G + + PET L + W GN+R Sbjct: 305 YRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKHPWEGNIR 364 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGEL-----FESTVAESTSQMQPDSWATLLAQWADRA 413 +L+N TV ++ +DL L F+ + + + +L D Sbjct: 365 ELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKMLEPVFDGI 424 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + LE+ L+ A+ + ++ AA+LLG RNTL +L+ Sbjct: 425 CLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLE 475 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 269/471 (57%), Gaps = 34/471 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V V+DD+ LE L G T ++G E L+ + + D++L+DI+M +DG + Sbjct: 4 VLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFEI 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDID-------EAVALVERA 118 L++ K +P VI++T ++ ++ AV+A +QGAF Y+ KPF +D EA V+ Sbjct: 64 LRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVKLK 123 Query: 119 ISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q +QQ + +II + M + I +++ + +VLI GESGTGKEL A Sbjct: 124 KEVKQLRQQLDFHE----KVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H +S R K PF+A+N A ++L+ +ELFGHEKGAFTGAN +++G E A G+LFL Sbjct: 180 RYIHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEI +M L +Q +LLRV+ + +F+R+G P+KVDVR IAAT++++++ V+ GKFREDL+ Sbjct: 240 DEITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + +PPLRER++DIP L +F + + + E + E L +PGNVR Sbjct: 300 YRLNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+ ++ ++ LP +L E + T + + +L Sbjct: 360 ELENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTK--KEGKFMSL------------- 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ELE+ + LR +K AA++LG R +L RKLK G+E Sbjct: 405 --------EELEKEYIKWILREVGNNKTVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 307 bits (787), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 269/478 (56%), Gaps = 30/478 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA-SKTPDVLLSDIRMPG 59 M+ + VV+D ++R L A G +G ++ L+ D++++D++M Sbjct: 2 MKNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKK 61 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 ++GL +L +K +P VI++TA+ + AV A ++GA+DY+ KPF E + + + A+ Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 120 SH--------YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 Y E + +L G IIG + M +V ++ +SR+ +VLI GESG Sbjct: 122 EKKELKERLKYLEGEVREKYKLEG----IIGNSAVMVEVLKVTADVSRTESTVLITGESG 177 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKEL+A A+H + PR+ PF+ +N A+P++L ESELFGH KG+FTGA + G F A Sbjct: 178 TGKELIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHA 237 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GT+FLDEIG+ Q +LLR L DG+ +VGG + VDVRIIAAT++NLE+ V +G Sbjct: 238 HKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQG 297 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 +FR+DLF+R+NVIR+HLP L+ER+EDIP L +FL++ +L + ++ A L Sbjct: 298 RFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNY 357 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGN+R+L+N ++ Q + ++ LP T P+ T+ Sbjct: 358 DWPGNIRELQNIVERAVALSKNQVIGVEALP----LPTGGFVAHNSNPERDVTV------ 407 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ + E E E+ + A+ G++ + +++LG TL RK+K+ ++ Sbjct: 408 -------KSSIVETLSEQEKNAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKIK 458 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 307 bits (787), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 181/469 (38%), Positives = 266/469 (56%), Gaps = 17/469 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V +V+D+ L ++ T +G E LE + P ++++D++MP M Sbjct: 22 MSQEKVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPRM 81 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFD---IDEAVALVER 117 DG+ LL+++ Q VI++TA +++AV A + GAFDYL KP D + ++ V R Sbjct: 82 DGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNVSR 141 Query: 118 AISHYQEQQQPRN-VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + +E R ++ ++G + M+DVF +I R++ +++SVLI GESGTGKEL Sbjct: 142 QLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKEL 201 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA LH SPR PF+A+N AAIP+ LIESE+FGHEKGAFTGA R G FE A+ GTL Sbjct: 202 VAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTL 261 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIG+MP+ Q +LLRVL D ++ R+G +DVR++AAT++N +Q V +G+ R D Sbjct: 262 LLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGD 321 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV +H+PPLRE +EDIP +A+ + + + + E +A L WPGN Sbjct: 322 LYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPGN 381 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L NT ++ G + Q LP +P A + A+ A++ Sbjct: 382 VRELRNTMERAVILCTGDRLQAQHLPPGF---------GTARPLKTAAVTAEPPANAVQV 432 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + EA ER L+ L T +K AA +LG TL KLKE Sbjct: 433 EVGTTVDEA----ERLLILKTLESTHNNKTRAAEILGISLKTLHNKLKE 477 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 187/473 (39%), Positives = 269/473 (56%), Gaps = 15/473 (3%) Query: 6 VWVVDDDSSIRWVLERAL------AGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 + +VDDD S+ L+ T + A L A P V++ D+ +P Sbjct: 4 LLIVDDDVSLLETLKMHFEEIEQDGQPRYQVATATSAAAGLRAAQEAMPSVVILDMMLPD 63 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALV-ERA 118 GL +++++K +I++TA+ D++ + A + GAFDY+ KPF A+ LV ERA Sbjct: 64 RTGLEIIEEMKGLCGDARIILVTAYHDMETTIRAMKAGAFDYIHKPFPDPAALDLVVERA 123 Query: 119 ISHYQEQQQPRNVQLNGPTT---DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + + Q ++ V DI+G +P MQ + + IG+++ S +VLI GESGTGKE Sbjct: 124 LEYRQLSRRADEVHRENAAARLGDIVGTSPLMQQLVKEIGKVTGSHATVLITGESGTGKE 183 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A +H +S PFI +N +AI L+ESELFGHEKGAFTGA + G+FE A+ GT Sbjct: 184 LIARVIHNYSYDEPRPFIGINCSAIVDTLLESELFGHEKGAFTGATAGKPGKFELAEDGT 243 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDM L +Q +LLRVL + +F RVGG +K+ R+IAATH+ L + V+ G+FRE Sbjct: 244 VFLDEIGDMSLMLQAKLLRVLQEREFERVGGVKRIKLRARVIAATHRALVEEVEAGRFRE 303 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL+ RL VI + +PPLRERREDIP L +H L+ ++ + E LTRL W G Sbjct: 304 DLYQRLKVITLQIPPLRERREDIPPLVKHLLERINEKVHKRVTRVPGEVMERLTRLPWRG 363 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN V+A G + DLP ES + + T A +A A Sbjct: 364 NVRELENVLTRAVVLAPGDVLRGDDLPA--LESPLPSPEPGRATSAHHTASAMFAAPA-- 419 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +L+ + E ER L+ A+ T+GHK ++LG R TL RKL++ G+ Sbjct: 420 EDDASLIPTLE-EAERQLIARAMTVTKGHKGRTCQILGISRPTLERKLQKYGL 471 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 163/464 (35%), Positives = 273/464 (58%), Gaps = 45/464 (9%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V ++DD+ + + L+ ++ G + + +++L + ++++D++MP MDGL L Sbjct: 4 VLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDGLQL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L++I++R PVI++T + +++ AV A + GA DY+ KPF ++ +LV R I E Sbjct: 64 LEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLIPEQDE- 122 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 I+ E+ M+ + I+ ++R+ I+VL+ GESG GKE++A +H+HS Sbjct: 123 --------------IVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHS 168 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 PR+ PF+A+N AAI + L+E+ELFGHEKGAFTGA + G+FE A+ GT+ LDEI +M Sbjct: 169 PRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMA 228 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 +Q +LLRV+ + + RVGG P+ +DVRIIA T+++L + V++G FREDLF+R+NV Sbjct: 229 YRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFP 288 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +PPLRER +DI LA FL+ + ++ + + + L + +W GNVR+LEN Sbjct: 289 IRIPPLRERSDDIIPLAEFFLKRLSNKMSKNFTITE-DMKKFLLKKSWQGNVRELENFIY 347 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 V++ + + + LFE ++ +++G L +A Sbjct: 348 RSAVLSQDGILRLHEDEINLFEE----------------------EKPVKAGK---LKDA 382 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ER L+ AL+ T+G++ +AA++LG TL K+ E G++ Sbjct: 383 ----ERELIVDALKKTEGNRTKAAKILGISVRTLRNKINEYGLK 422 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 307 bits (786), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 186/470 (39%), Positives = 262/470 (55%), Gaps = 31/470 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD + VL R L A + + A L LA + DV+L+D+RMPG+DG+ L Sbjct: 4 ILVVDDDPLAQRVLVRLLCPAH-DVHAYGDPAAALRHLADRGADVILTDLRMPGLDGIEL 62 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L + ++ P + V ++T HS + +AV A ++GA DYL KPF+ D+ + VERAI + Sbjct: 63 LSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERRRLL 122 Query: 126 Q----QPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q G + P M + + +R+ +VL+ GE+G GKE+VA + Sbjct: 123 ARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVARLV 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+ SPRA F+++N A+P+ L+ESELFGHE+GAFTGA R G FE ADGGT+ LDEI Sbjct: 183 HQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G Q RLLRVL + RVGG P+ VDVR+IAAT+++LE+ EG+FR+DL++RL Sbjct: 243 GATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V+ + +PPLRERRED+ LA HFL+ R + + + PE A L +PGNVR+LE Sbjct: 303 GVVTLVVPPLRERREDVGPLAEHFLR-KYRHVNPAVRGVSPEGLAKLVAYDYPGNVRELE 361 Query: 362 NTCRWLTVMAAGQEVLIQDL---PGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 N ++ G+ + L PG + AE QP+ A Sbjct: 362 NVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPVAI-------------- 407 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + ER + L G + EAARLLG ++TL RKLK G+ Sbjct: 408 --------DDAEREHIRRVLERCGGRRGEAARLLGIDKSTLWRKLKRYGL 449 >UniRef50_A1SUB0 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SUB0_PSYIN Length = 472 Score = 307 bits (786), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 263/467 (56%), Gaps = 22/467 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +VDDD I +L + G +G LE + ++ PD++L+D+RMP MDG L Sbjct: 15 VLIVDDDPDICSLLSYLMKREGYVVEIVHDGMAALELMRNRVPDIILTDLRMPRMDGFEL 74 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI-SHYQE 124 LKQ+K LPV+I+TA++ + AV + ++GA DYL KPFD + V LV R + H Sbjct: 75 LKQVKLIKQDLPVVILTAYAGVHGAVESMKEGADDYLAKPFDNSKVVMLVHRILLQHNCY 134 Query: 125 QQQPRNVQ-LNGPTTDII---GEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ N Q + G DI+ G + + + + +++S+ +V+I G +G GKE+VA A Sbjct: 135 ERGKLNEQPIEGGVHDIVTVMGPSAIIHTLAAQVKLVAQSNFNVIIQGATGVGKEVVAQA 194 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H SP A PF+ ++ AIP+ L+ESELFGHEKGAFTGA +QG+FE A GGTLFLDE Sbjct: 195 IHAQSPYASGPFVPVDCGAIPEMLLESELFGHEKGAFTGAYRAKQGKFEAARGGTLFLDE 254 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 I +MPL Q ++LRV+ + + VG P+K+DVR+I A+H+NLE +V EG FREDL++R Sbjct: 255 IANMPLTSQAKILRVMQEKIIFPVGSNQPIKIDVRLIVASHENLEAKVAEGTFREDLYYR 314 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL---AWPGNV 357 N + +P L ER+ED LA+ F+ RELG L + A+ ++ W GNV Sbjct: 315 FNEFTIKVPLLSERKEDQIYLAKRFMNETNRELGKNVTL----SIGAINKMQTYEWRGNV 370 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L R ++A E+ E ++ + D L A Sbjct: 371 RELRAVIRRAVLLAQ----------TEIREEHLSIRSRIRDKDESGQLNGINFTTASSLP 420 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + ++ + +E+ L LR T G+K +AAR+L TL K+K Sbjct: 421 LKEIVRDCSERVEKKTLAQVLRETNGNKAKAARILKIDYKTLLNKVK 467 >UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Cardiobacteriaceae RepID=A5EVU6_DICNV Length = 528 Score = 306 bits (785), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 163/378 (43%), Positives = 237/378 (62%), Gaps = 9/378 (2%) Query: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALL 66 VVDD+ I ++E AL G + + N ++ L DV+ D+R+P DGL LL Sbjct: 5 LVVDDEKDICELIEMALMGQYIEFKSAFNVKTAIKLLKENRFDVVFCDVRLPDGDGLDLL 64 Query: 67 KQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQ 126 I++++P PV ++TAH ++D A+ A + GAFD++ KPF++ + + A+S Sbjct: 65 AHIQKQYPNTPVCMITAHGNMDMAIRALKIGAFDFINKPFELKQLRTICRSALS-----S 119 Query: 127 QPRNVQLNGP--TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 QP+N + NG T +IGEAP M+ V +I +++RS V I+GESGTGKE+ A ++H Sbjct: 120 QPKNKKDNGEPRKTALIGEAPVMEKVRALIAKVARSQAPVFIHGESGTGKEVAARSIHEQ 179 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S RA FIA+N AIP++L+ESE FG++KG+FTGAN G F A+GGTLFLDE+ D+ Sbjct: 180 SNRADGAFIAVNCGAIPENLVESEFFGYKKGSFTGANQDTDGLFVAANGGTLFLDEVADL 239 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +Q +LLR + + +GG KVDVRII+ATH NL ++VQ G+FREDL++RLNV+ Sbjct: 240 PLSMQVKLLRAIQERAVRPIGGDKEEKVDVRIISATHDNLAEKVQLGEFREDLYYRLNVV 299 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +PPLR+R D+ L L+ A + G L E L A+PGNVR+LEN Sbjct: 300 ALTMPPLRDRTGDVNILTDFLLKKLAEQRGYPLAKLTDEALNKLNSYAFPGNVRELENIL 359 Query: 365 -RWLTVMAAGQEVLIQDL 381 R LT M G+++ +D+ Sbjct: 360 ERALTFM-DGEQIEAEDI 376 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 306 bits (785), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 190/501 (37%), Positives = 277/501 (55%), Gaps = 40/501 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP--DVLLSDIRMPGMDGL 63 + V+DDD R +L + G +NG LE + K +V+L D+ MPGM+G Sbjct: 43 ILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELMQRKGGIINVILLDLLMPGMNGH 102 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFD-------IDEAVALVE 116 + L+ + +R PVI+ T ++ V A Q GAFD+L KP + A+ + Sbjct: 103 SFLEALAERGVDTPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKMAS 162 Query: 117 RAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 R + ++PR + DI+ +PAM V + R ++S+I V++ GESG GKE+ Sbjct: 163 RD-GKVKTARRPRGGSVG--FDDIVSASPAMIRVIDLARRAAQSNIPVVLEGESGVGKEM 219 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+ S RA PF+ +N AIP +L+ES LFGHEKGAFTGA+ G+F ADGGTL Sbjct: 220 VARAIQAASDRATKPFVTVNCGAIPGNLVESILFGHEKGAFTGASEKHSGKFVDADGGTL 279 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGD+PL+VQ +LLR + G+ VG P KV+VR+I+AT+++L V+EG+FRED Sbjct: 280 FLDEIGDLPLEVQVKLLRAVQQGEIETVGARQPQKVNVRLISATNKDLINEVREGRFRED 339 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL-LHPETEAALTRLAWPG 355 L++RLNV + +P LR R+EDIP L R F++ A E ++ +L + A LT WPG Sbjct: 340 LYYRLNVFPITIPALRRRKEDIPVLVRAFVERFAAEQRLDQRLTVSNGAMALLTSYDWPG 399 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLP---GELFESTVAEST----------SQMQPDSW 402 N+RQLEN V+A G E+ ++D P ++ VA+ T + PD Sbjct: 400 NIRQLENAIFRAVVLAEGHELTVRDFPQVATQIPGYIVADRTGLSWGDGGPEGRTAPDRP 459 Query: 403 ATLLAQWA--------------DRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEA 448 A + A + A+ S + E+E L+ AL+ +G + Sbjct: 460 AAVTADAGALETAPTDQRDERIENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQV 519 Query: 449 ARLLGWGRNTLTRKLKELGME 469 AR LG GR+TL RKLK+ G++ Sbjct: 520 ARKLGIGRSTLYRKLKDYGID 540 >UniRef50_C5AKI5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=5 Tax=Proteobacteria RepID=C5AKI5_BURGB Length = 467 Score = 306 bits (785), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 189/476 (39%), Positives = 274/476 (57%), Gaps = 34/476 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL-ASKTPDVLLSDIRMPGMDGLA 64 + ++DDD + R L + G +G E L A P + D R+PG DGLA Sbjct: 4 ILIIDDDDAFREGLAETIEDLGHVPLEAGSGDEAFAMLRAGAAPACVFLDFRLPGADGLA 63 Query: 65 LLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L+ ++ +PV+++TAH+ + A + GAF++L KP E AL+ R ++ Sbjct: 64 VLEALRAMDGADRVPVVMLTAHATSANTIGAMRLGAFEHLTKPVGRAEIAALLGRVLAGQ 123 Query: 123 QEQ---QQPRNVQLNGPTT--DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +E + P + P+ ++G + AM+ V + +GR + + +VLI GE+GTGKE+ Sbjct: 124 REAADAEAPSAFLDDAPSDGPQLLGISEAMRGVQKRLGRAAAADSTVLITGETGTGKEVA 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A LHR S RA PF+A+N AAIP+ L+ESELFGH+KGAFTGA+ RQGR QA GGTLF Sbjct: 184 ARVLHRESARAGGPFVAVNCAAIPEALLESELFGHDKGAFTGAHAPRQGRIAQAHGGTLF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDMP+ +Q +LLRVL + Q +G P+ VDVR++AATH++L++RV G FR+DL Sbjct: 244 LDEIGDMPIAMQAKLLRVLQERQVTPLGAARPMAVDVRVVAATHRDLQERVAAGAFRQDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAA-----RELGVEAKLLHPETEAALTRLA 352 +RL+VI +H+PPLRER DI LA HFL A + L VEA+ L L Sbjct: 304 LYRLDVIPLHIPPLRERVADILPLAEHFLAALAPAAARKRLSVEAQRL-------LVTFT 356 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADR 412 WPGNVR+L N + +A G + D + + ++ + + AQ+A+ Sbjct: 357 WPGNVRELANAIERASALAPGPLLTRDDF------AFLLDAAAGAADADADAVPAQFAEL 410 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L+EA +LER L+ AL + G++ EAAR LG R +L +L LG+ Sbjct: 411 P--------LNEALAQLERALIVRALASSNGNRAEAARRLGISRQSLYTRLASLGI 458 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 306 bits (785), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 174/466 (37%), Positives = 272/466 (58%), Gaps = 29/466 (6%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +VDD+ +R + R + GL +G E + ++ D++ D+RM GM G+ +L Sbjct: 12 IVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVLG 71 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 IK + V+++T ++ D + A + GAFDYL KPF +D+ +++RA Q Sbjct: 72 WIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPAQ 131 Query: 128 ----PRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 P++ L GP ++G +P MQ++F + +++ + +VLI GESGTGKELVA A+H Sbjct: 132 TIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAIH 191 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 HS R + F+ ++ +A+ ++L+ESELFGH KG+FTGA ++G FE A+ GT F DEI Sbjct: 192 YHSRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEIS 251 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++ +D+Q +LLRV+ + +F +VGG +KVD+RI+ A++++L + E KFREDLF+RL+ Sbjct: 252 NLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRLH 311 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 VI +HLPPLRER +DI L +F+ +R++G EA + E L AWPGNVR+LEN Sbjct: 312 VIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELEN 371 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 T ++ + + LP ++ Q PD LRS ++ Sbjct: 372 TIERTLILKDDAVIKPEHLPQDI---------RQQPPD-------------LRSFSDKMV 409 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 S +LER + L T G Q+AA +LG R TL+ K+K+ G+ Sbjct: 410 S--LKDLERDYIRFVLSRTNGGIQKAAGILGINRKTLSMKMKKYGL 453 >UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=Gammaproteobacteria RepID=Q5ZUN1_LEGPH Length = 453 Score = 306 bits (785), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 177/461 (38%), Positives = 263/461 (57%), Gaps = 34/461 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +V+DDS +R L + +G T T ++G E L L P V+L+DIRM +DG L Sbjct: 20 VLIVEDDSVLREALAETMTISGHTYITAKDGKEALALLELHNPSVVLTDIRMDKLDGNQL 79 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L +I+++ P LPVI+MTA+ ++ AV+A + GA DYL KPF A L+E+ Sbjct: 80 LNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFS---AQVLIEKI------- 129 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 +Q L+ D I P Q + + R+++S + V+I+GESGTGKE++AH +H HS Sbjct: 130 KQYIKTDLSEEDNDPIARDPKSQALLTMALRVAQSDVGVMISGESGTGKEVLAHFIHDHS 189 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R+K PFIA+N AAIP+ ++E+ LFG+EKGAFTGA G+FEQA GGTL LDE+ +M Sbjct: 190 YRSKQPFIAINCAAIPEQMLEATLFGYEKGAFTGAYKSTPGKFEQAQGGTLLLDEVSEMS 249 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LLRVL + + R+G + +DVRIIA T++ L++ VQ G+FREDL++RLNV Sbjct: 250 LGLQAKLLRVLQEKEVERIGSNKIINLDVRIIATTNRQLKEEVQAGRFREDLYYRLNVFP 309 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + PLRER DI LA + ++ + ++ P+ + A+ +WPGN R+L+N Sbjct: 310 LQWHPLRERTSDIIPLANYLIRKHCQHKQPIVPVISPDAQKAMLSYSWPGNARELDNVI- 368 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 Q L+ G + E + + S P T + +NL Sbjct: 369 --------QRALVLQTQGIIEEEHLQITNSTTMPSEEKT----------KGTSKNLQIHE 410 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +E+TLL +G++Q+ A LLG TL KL ++ Sbjct: 411 YELIEKTLL-----ENEGNRQKVAALLGVSERTLRYKLAKM 446 >UniRef50_A8FXH4 Two component, sigma54 specific, transcriptional regulator, fis family n=7 Tax=Gammaproteobacteria RepID=A8FXH4_SHESH Length = 500 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 277/482 (57%), Gaps = 33/482 (6%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +V+D S+ + L G T +G + L LA PD+L+ DI++P M G+ +L+ Sbjct: 11 LVEDSMSLGALYTEYLRSEGAKVTHVNHGEDALTELAQWQPDLLVLDIKLPDMSGMEILQ 70 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ---- 123 +++ +P + VI++TAH +D AV + + GAFD+L KPFD V A+ Q Sbjct: 71 KVQTSYPGITVIMITAHGTIDLAVESMKSGAFDFLVKPFDAKRLSITVRNALKQRQLVNL 130 Query: 124 ----EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 EQ P+ + +GE+ AMQ V++ I ++ S SV I GESGTGKE+ AH Sbjct: 131 VERYEQSLPKENYMG-----FVGESLAMQTVYKTIDCVANSKASVFIVGESGTGKEVCAH 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H R++ PF+ALN A+IPKDLIESE+FGH KGAFTGA R+G +A+ GTLFLD Sbjct: 186 AIHHAGNRSEKPFVALNCASIPKDLIESEIFGHTKGAFTGAVANREGAASRANRGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI +M L++Q++LLR + G F +VGG KVDVR ++AT++ + V++G+FREDLF+ Sbjct: 246 EICEMDLELQSKLLRFIQTGVFQKVGGTKEEKVDVRFVSATNRIPWEEVKQGRFREDLFY 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL+VI + LPPLR R +D+ L L+ RE G + K E + L WPGNVRQ Sbjct: 306 RLHVIPIELPPLRMRGKDVLLLVNKLLKEYNREEGKQFKSFTAEAKKLLQSYDWPGNVRQ 365 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP------DSWATLLAQWADRA 413 L+N R + V+ + V LP LF+S S +Q++P + ++L A Sbjct: 366 LQNVIRQVVVLNSSDIVEASMLPA-LFKSEPGNSQAQIRPVIAIASANQPSVLNNHESPA 424 Query: 414 L--RSGHQNLL---SEA-QPEL-------ERTLLTTALRHTQGHKQEAARLLGWGRNTLT 460 + ++G QNL SEA +PE E+ + A+ G+ +AA LL +T+ Sbjct: 425 IDEQAGSQNLQSAPSEADKPEAIIPLWLSEKQTIEAAIEQCDGNVPKAAALLDISASTIY 484 Query: 461 RK 462 RK Sbjct: 485 RK 486 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 183/470 (38%), Positives = 284/470 (60%), Gaps = 19/470 (4%) Query: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALL 66 +VDD+ I +LE LA L+ N A+ E L PD+ L+D+++P +G++L+ Sbjct: 1 MLVDDEPDILRLLEITLARMNLSTLRATNLADAYELLRQHEPDLCLTDMKLPDGNGMSLI 60 Query: 67 KQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQ 126 + I+ +P +PV ++TAH ++AA+ A + GAFD++ KP +++ +V A+ Sbjct: 61 EHIQTHYPTIPVAMITAHGSVEAAIDALKLGAFDFVSKPIALEKLRDIVNHALQVKDAGD 120 Query: 127 QPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSP 186 + QL ++G+ PAM+ + I +++RS V I+GESG GKE+VA +H+ SP Sbjct: 121 DAASDQL------LVGDTPAMERLRLQIQKVARSQAPVHIHGESGVGKEVVARLIHQLSP 174 Query: 187 RAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL 246 RA+ PFIA+N AIP DL+ESELFGH+KG+FTGA + G F+ A GGTL LDE+ D+PL Sbjct: 175 RAEQPFIAVNCGAIPADLVESELFGHKKGSFTGAAADKPGLFQAAAGGTLLLDEVADLPL 234 Query: 247 DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRV 306 +VQ +LLRV+ + VG V DVR+++ATH++L V++G FR+DLF+R+NVI + Sbjct: 235 NVQVKLLRVIQEKAVRPVGAQQEVPTDVRLLSATHKDLSLAVRDGHFRDDLFYRINVIAI 294 Query: 307 HLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA---WPGNVRQLENT 363 +P LR+RREDIP LA H LQ A + G +A ++ +T AALT+L +PGNVR+LEN Sbjct: 295 DVPSLRKRREDIPLLATHLLQRIAMDNGSDA--INIDT-AALTKLCDYDFPGNVRELENI 351 Query: 364 CRWLTVMAAGQEVLIQDLPGE-LFESTVAE---STSQMQPDSWATLLAQWADRALRSGHQ 419 +A G E+ I D+ + + S + E + + P+ + + D + +G Sbjct: 352 LARAHALADGGELTIDDIQFQTMGASEITEHHAKSDESYPEEPPHVPSGRIDLSDVNGD- 410 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +ER +L A+ + +K AA+ LG +L +LK+LG+E Sbjct: 411 --LESFLNTIEREVLDQAMLKHRWNKTAAAKALGISFRSLRYRLKKLGLE 458 >UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Deltaproteobacteria RepID=Q2INT5_ANADE Length = 476 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 196/465 (42%), Positives = 271/465 (58%), Gaps = 18/465 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 +V VVDD+S L + G +GA LE L + V+++D+ MPGM G Sbjct: 4 LVLVVDDESPNLESLGKIFEREGWRVALAGSGAAALEVLRRERAAVVVTDLMMPGMSGDE 63 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL+ +K P V++MTA+ ++AAV+A +QGA+D++ KP V V +A+ Sbjct: 64 LLRAVKTVSPESEVVVMTAYGTVEAAVAAMKQGAYDFITKPVKRHAIVKAVRQALERASL 123 Query: 125 QQQPRNVQLN------GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + R ++ G ++G+APA + V I+ + + + +VL+ GESGTGKEL A Sbjct: 124 VAENRALKARLAELAPGGAGALLGDAPAFRAVLEILRQAAPTQATVLLLGESGTGKELAA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H SPRA PF+ ++ AAIP+ L+ESELFGHEKGAFTGA + GRFE+A GGTLFL Sbjct: 184 RLVHDLSPRAAGPFVPIHCAAIPETLLESELFGHEKGAFTGAVARKDGRFERAHGGTLFL 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG+M VQ +LLR L DG RVGG PV+VDVR++AAT+++L V+ G+FREDLF Sbjct: 244 DEIGEMSPAVQVKLLRFLQDGVLERVGGNEPVRVDVRVVAATNKDLAAEVKAGRFREDLF 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+V+RV LPPLRERRED+P LA FL+ A G P AAL R AWPGNVR Sbjct: 304 YRLDVVRVRLPPLRERREDVPLLAMAFLRRMAERNGKPISGFTPGAMAALERYAWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L++ V+ V + DLP + + A + + A +L Sbjct: 364 ELQHAIERAVVLTRADVVEVGDLPEAIRAAGPAAEAAPPAGPAGAPVLTVP--------- 414 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 L + E+ER ++ LRHT G K AA+LLG T+ RKL Sbjct: 415 ---LGTSMDEIERRVIRETLRHTHGDKNLAAQLLGIAARTIYRKL 456 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 262/469 (55%), Gaps = 23/469 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M G + +V+DD S+R V+ L G ++ E L + ++++D+ +PGM Sbjct: 1 MSSGRILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL LLK+++ +P VI+MTA + AV A + GA+D+L KP E LV R + Sbjct: 61 SGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLE 120 Query: 121 HYQ--EQQQPRNVQLNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H++ E+ Q L+ I+G + + + R++ + ++LI GE+GTGKEL Sbjct: 121 HHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R PFI +N AIPK+L+ESELFGH KG+FTGA T ++G+ E ADGGT+ Sbjct: 181 VAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGGTV 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIG+MPL++Q R+LR++ + + +VG +P KVDVRI+AATH+ L V+ G FRED Sbjct: 241 LLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL V+ ++LPPLRER DI L +HFL+ + ++ + T +WPGN Sbjct: 301 LYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQLEN L ++A + DLP L + + AL Sbjct: 361 VRQLENAVERLVLLARDSTINASDLPDFL--------------SAAPAPPPEPVPVALPE 406 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 G NL +LE+ L+ AL+ G++ AA+ L R +L++ Sbjct: 407 GGINL-----EDLEKDLILQALKKYAGNQTRAAQYLNMSRRAFAYRLEK 450 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 173/470 (36%), Positives = 270/470 (57%), Gaps = 33/470 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP-----GM 60 + +VDD+ IR L+ L+ A + E L+ + TP V+ D+ +P Sbjct: 4 LLIVDDNGDIRRQLKWGLSKAPYALHFATHVEEALQVFQAVTPGVVTLDLGLPPHPEDAS 63 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA-- 118 GLA L+Q+ P VI++T + A A + GA+D+ KP D+ E ++ RA Sbjct: 64 QGLACLEQMIAARPSTKVIVITGFDGQENARRAVELGAYDFFRKPLDLGELKVMINRAFH 123 Query: 119 ---ISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 I + P+ I+G+ PAM+DV+ +I +++ S VL++GESGTGKE Sbjct: 124 LLEIERVAPAETPKKPAAPRLRHGIVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGKE 183 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H+ SPR + P +++N AIP++L+ESE FGHE+GAFTGA +G+ E A+ GT Sbjct: 184 LVAMAIHQASPRRQQPLVSINCGAIPENLLESEFFGHERGAFTGATNTVKGKVEYAENGT 243 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++P+++Q +LLR L D +F RVGG ++V+VR++AAT+ N+++ ++ G+FRE Sbjct: 244 LFLDEIGELPVNLQVKLLRFLQDMRFQRVGGRKTLEVNVRVLAATNVNIQEAMRLGQFRE 303 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++R+ V+ +HLPPLR+R ED+ LA HFL++ ++L + + PE A+ WPG Sbjct: 304 DLYYRIGVVGIHLPPLRDRGEDVVLLANHFLEIHGKQLPKKIQGFSPEAMEAIRNYPWPG 363 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN R ++ G S++ P S LA A Sbjct: 364 NVRELENKVRRAIILVEG---------------------SRITPQSLG--LAGEASSPGP 400 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + + L EA+ +LER ++ ALR +G+ +A+ LG R T L++ Sbjct: 401 ARAETTLREARTQLERQMMLQALRRFEGNIVKASEALGVSRPTFYDLLRK 450 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 185/472 (39%), Positives = 269/472 (56%), Gaps = 23/472 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +V+D + +R +L AL G N E L LA + +L+D+++PG G+ Sbjct: 3 CILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMD 62 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L PM+PV++MTA + AV A + GAFD++ KP D+ L+ERA+ + Sbjct: 63 VLSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQRL 122 Query: 125 QQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + NV L IIGE P MQ+ R + R++ S +VL+ GESGTGKEL A Sbjct: 123 MRD--NVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H+ S R+ PF+ALN AA+P+ LIE+ELFGHEKGAFTGANT + G+FE A+ GT+FL Sbjct: 181 RAIHQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++PL++Q++LLRVL + R+G P+++DVR++AAT++ LEQ V+ G FR DL+ Sbjct: 241 DEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL V + +PPLRER ED+ +A HFL +EL L P+ AAL WPGNVR Sbjct: 301 YRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLP-GELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 +L+NT ++ EV DL S A S + D +L Sbjct: 361 ELQNTIERAAIL-HDTEVTAADLGLSANLRSAAAVSLGEHSIDMGGSL------------ 407 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++A +E+ + LR + +K AA LG TL K+ G++ Sbjct: 408 -PEVSAQASRTIEKAKIEATLRECKWNKSAAAERLGISYKTLLTKIHGYGLD 458 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 261/465 (56%), Gaps = 36/465 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VVDD+ +R L RALA G T E+ E E LA+ D+++ DI +PG G+ Sbjct: 15 VLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPGKAGIEW 74 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+ + VI++TA +D+ A+ A + GA D++ KPF ID+ + + R+ + Sbjct: 75 LQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRSTERARLA 134 Query: 126 QQP----RNVQLNGPTTD-IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ R V +G +D +IG +PA+ + +I+ R++ + +VLI GESG GKE+VA A Sbjct: 135 RENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGKEVVARA 194 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH+ SPRA+ PF+A+N AAI +LIESELFGH KGAFTGA R G F A GGTLFLDE Sbjct: 195 LHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGGTLFLDE 254 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++PL +Q+RLLRVL + + VG V VDVR++AAT+++L V +FREDLF+R Sbjct: 255 IGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFREDLFYR 314 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L VI + +PPLRER ED+P LA F+Q A +LG+ L+ PE A L WPGNVR+L Sbjct: 315 LEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWPGNVREL 374 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N + +L D P LA A + Sbjct: 375 RNFVE--------RSLLFGDFP-----------------------LASLAGAVAPPPPAS 403 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E+E+ + L G+K AA LLG R TL RK E Sbjct: 404 AAPLLLEEVEKRHILAVLDQCGGNKTRAAELLGVSRKTLERKCAE 448 >UniRef50_D0KVQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVQ8_HALNC Length = 459 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 166/463 (35%), Positives = 265/463 (57%), Gaps = 24/463 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 ++ +DDD + R GL F++ L + T D+++SD++MPGM GL Sbjct: 6 LIAFIDDDPRASELFSRYAQTEGLQVQGFQSVDAAQSWLENNTADLIISDLKMPGMSGLE 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L ++QR +P +++T +S LD A+ A + GA D++ KP+D +E V L R + + Sbjct: 66 FLAWLRQRDSEVPFVLITGYSTLDNAIDALRLGANDFIKKPYDPEELVQLTHRLL---RR 122 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 P + ++G +PA+ V+R+I ++ I+V+I GESG+GKEL A A+H Sbjct: 123 DPDPHAHNFSEAERSMLGNSPAIAGVYRVIDKIHDVRINVMIEGESGSGKELAARAIHDR 182 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S + P+I ++ A+ L+E+ELFGHEKGA+TGA++ + G E A GGT+FLDEIG++ Sbjct: 183 SDFSDKPYIVIDCGALTDTLLENELFGHEKGAYTGASSTKPGLLEVASGGTVFLDEIGNI 242 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 +Q +LLRV+ + Q RVGG P+K+DVR I A++++L Q V EG FR DL+HRL+V+ Sbjct: 243 SDAMQVKLLRVIQEQQITRVGGVTPIKIDVRFIVASNRDLAQMVTEGSFRHDLYHRLHVV 302 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 R+ +PPLRER+EDIP L HF++ A A+ + + A + WPGN+R+L+N Sbjct: 303 RLRIPPLRERKEDIPILVNHFIRHFAARYNRPAERFNADCMARILEYTWPGNIRELKNMI 362 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 + +++ E+ + AE+T WA+ L R SG + Sbjct: 363 KRAVALSSEAEIRL---------DQEAEATP-----PWASGLI----RPQSSGGAEAIDA 404 Query: 425 AQPE---LERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 P LER + L+ G++++ A+ LG ++TL RK++ Sbjct: 405 DHPTLDVLERRYIEKLLKEYDGNREKTAQTLGINKSTLWRKMQ 447 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 264/466 (56%), Gaps = 28/466 (6%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 RG + +VDD+ + L +L AG + A +AL PDVLLSD+ MPG DG Sbjct: 9 RGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGTDG 68 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL++ + P L IIMT + AV A + GAFDY+ KPF + + + +++RA+ Sbjct: 69 IQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAMEVR 128 Query: 123 QEQQQPRNVQ-------LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + +++ N++ I+G PA++ V ++I +++ ++ +VL+ G SGTGKE Sbjct: 129 RLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTGKE 188 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H +S R P + +N A + + L+ESELFGHEKGAFTGA+ + G FE A+GGT Sbjct: 189 LVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEGGT 248 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LF+DE+ +M +Q +LLRVL DG + RVG + DVRIIAAT++ LE + G+FRE Sbjct: 249 LFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRFRE 308 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF RL+VI V LP L++RRED+P L +HFL R++G + P + L R WPG Sbjct: 309 DLFFRLSVITVDLPALKDRREDVPELIQHFLHT--RQVGRGPMTVDPAARSLLCRYDWPG 366 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L N ++A G + DLP L + + + + A Sbjct: 367 NIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGE--------------EPAPT 412 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461 +G +L +ER + L G+K +AA+ LG R TL R Sbjct: 413 TGPDDL-----DRVERHHVRDVLHRHGGNKVQAAKALGVSRRTLYR 453 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 265/467 (56%), Gaps = 24/467 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ SI ++ L G T + + L + D+L DI +P DG+ Sbjct: 4 ILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDGIDG 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 LK+IK+ P L V+I++ H +++ AV A + GA+D+L KP ++ + +V+ +Q Sbjct: 64 LKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIVKHLQDKFQLM 123 Query: 124 -EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + ++ R QL D+IG + + D+ + I +++ ++ V+I GE+GTGKE VA +H Sbjct: 124 RDLRESRGDQLK--KYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLIH 181 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R++ F+ +N AAIP +L+ESE+FGHEKGAFTGA+ ++G+FE+ D GT+FLDEIG Sbjct: 182 MLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEIG 241 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DM + Q +LLRVL + F RVGG A V D R+I AT++ LE + +G FREDL++R+N Sbjct: 242 DMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRIN 301 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ + +PPLRER +DIP L HF++ A G+E K + E + WPGNVRQL+N Sbjct: 302 VVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLKN 361 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + V++ + + D P + + + ++ ++ L Sbjct: 362 LVERMVVLSEDSVMSLDDAPDFIQGKHFPQKSYDVE-------------------YEYPL 402 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A+ E+ + L++ + +AR+L R L RK+K G+E Sbjct: 403 KHAKENFEKHYILNILQNNDWNISRSARILEIERTYLHRKIKAYGIE 449 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 179/459 (38%), Positives = 260/459 (56%), Gaps = 31/459 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V +V+DD VL L AG+ +G E L L D++LSD +M MDG L Sbjct: 8 VLLVEDDVDFAEVLAEGLEEAGMEVQQAADGKEALNRLRDGQFDLILSDAQMQPMDGYGL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L ++ + PV++MTA +D AV A Q GA DYL KPF + E + ++R E+ Sbjct: 68 LAALRAQPGHPPVVMMTAWGTIDEAVRALQNGAVDYLVKPFAMQELLTKLQR-----HER 122 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 QP G + + +P M + R++++ SVL+ GESG GKE++A +HR S Sbjct: 123 LQP------GAELEPLAHSPVMLETLIKARRVAQTEASVLLTGESGVGKEVLARFIHRES 176 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 RA+ PF+A+N AAIP+ L+E+ LFGHEKGAFTGA+ G+FEQA GGTL LDE+ +M Sbjct: 177 NRAREPFVAVNCAAIPESLLEATLFGHEKGAFTGASQSSPGKFEQAQGGTLLLDEVTEMA 236 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 L +Q +LLRVL + + RVGG +++DVR+IA ++++L Q V EGKFREDL++RL VI Sbjct: 237 LPLQAKLLRVLQERELERVGGRRTIRLDVRVIATSNRDLRQAVSEGKFREDLYYRLQVIP 296 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +PPLR+RREDI LA+ L + + K L PE +A L WPGNVR+L+N + Sbjct: 297 LCVPPLRQRREDILPLAQRLLAKHCERMAIAPKSLDPEAQAVLLSYPWPGNVRELDNALQ 356 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + +A + DL G T+ ++ S+ + +L + Sbjct: 357 RAAIFSADTVIRSDDL-GLEIRGTLDDARSE-------------------GSSRPILEDV 396 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + E+ + + LR +G + EAAR LG TL KL+ Sbjct: 397 RSRQEQETIVSVLRECRGSRNEAARRLGISPRTLRHKLQ 435 >UniRef50_Q2SNF9 Sigma 54-dependent transcriptional activator containing CheY-like receiver domain n=2 Tax=Gammaproteobacteria RepID=Q2SNF9_HAHCH Length = 452 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 273/471 (57%), Gaps = 35/471 (7%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 +V+++DDDSS+R LE LA A L + + L+ + V++SD+RMPGMDG+ Sbjct: 3 NLVYIIDDDSSVREALEEWLALADLEARGWTSAEAALQTIDESFAGVVVSDVRMPGMDGM 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---S 120 ALL+++ + +PV+++T H D+ AV A +QGA+D++ KPF V ++RA S Sbjct: 63 ALLQKMPKN---IPVLLITGHGDIAMAVEAMKQGAYDFIEKPFQPTHLVDAIKRACRQRS 119 Query: 121 HYQEQQQPRNV--QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 E ++ R G + +IG++P ++ + R + L++ + VLI+GE+G GKELVA Sbjct: 120 LLLENERLRKALASQQGLESILIGDSPGIKRLRRHVHELAQLDVDVLIHGETGVGKELVA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 LH RAK PF+ALN+AAIP++L ESELFGH AFTGA + G+FE A+ GTLFL Sbjct: 180 RCLHDFGKRAKHPFVALNVAAIPENLFESELFGHTASAFTGAQKAQAGKFEYANKGTLFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ MPL Q ++LR L + + R+G + V +DVR++AAT ++L++ EG+FR DL+ Sbjct: 240 DEVESMPLHFQVKVLRALQEREVVRLGSHQAVALDVRVVAATKEDLKKAGDEGRFRSDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL V + +PPLRERREDI L HFL++AA++ EA L + AL WPGNVR Sbjct: 300 YRLMVAELRIPPLRERREDIALLFAHFLKLAAQKHDKEAPELRGDDWIALESHNWPGNVR 359 Query: 359 QLENTC-RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 +L+N R+L E + + L GE + S S A+ +A++ Sbjct: 360 ELKNLAERYLLRSQFSDESIREVLSGEKLD------MSSPSDQSLASRVAEY-------- 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ +++ L +G+ + L R TL +K++ G+ Sbjct: 406 ------------EKAVISAELTAKKGNINQVMEELDLPRRTLNQKMQRYGL 444 >UniRef50_D0IAX5 Two component sigma54 specific transcriptional regulator Fis family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IAX5_VIBHO Length = 451 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 159/367 (43%), Positives = 228/367 (62%), Gaps = 5/367 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M +G + +V+DD +R L+ L G T F L +L + ++SDIRMP M Sbjct: 1 MSKGRIVLVEDDKELRQSLKEILVLEGFLVTDFAAADMALASLQYNSDTTVISDIRMPNM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+A LK ++Q P LPVI+++ H+D++ A+ A + GAFD++ KP + + L E+A Sbjct: 61 DGIAFLKHLQQLDPALPVILISGHADIETALEAIKLGAFDFVEKPLRPERLIGLAEKASQ 120 Query: 121 HYQ---EQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 H E ++ R L T D +IG++ MQ + + + L+ + ++++INGE+GTGKE Sbjct: 121 HRALTIENRRLRQNTLRDITIDELLIGQSDIMQKLKQRLLTLANADVNIVINGETGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 +A LH S R PF+A+N A+P++LIESELFGHE G+FTGAN R G+ E A GGT Sbjct: 181 KIARTLHAQSSRKDRPFVAINCGAMPENLIESELFGHEAGSFTGANKKRIGKIEFASGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEI MPL Q RLLRV+ +G+ RVG V VD+++++A +L QEG FR+ Sbjct: 241 LFLDEIESMPLTAQIRLLRVIQEGELERVGSNDTVHVDLKVLSAAKGDLLALSQEGTFRQ 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV + +PPLRER+ DIP+L +FL A + LG +A L L WPG Sbjct: 301 DLYYRLNVASLDIPPLRERKSDIPQLLGYFLYNAEKRLGQKAPTLSSLHFQQLMSHDWPG 360 Query: 356 NVRQLEN 362 NVR+L N Sbjct: 361 NVRELMN 367 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 175/468 (37%), Positives = 272/468 (58%), Gaps = 22/468 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAE----VLEALASKTPDVLLSDIRMPGMD 61 V +VD+D + + +L G CT GAE L+ + + DV+++++ M +D Sbjct: 17 VLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITELMMDEVD 76 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +L++ K P VI++T H+ + +A++A Q GA YL KP DI E V+RA S Sbjct: 77 GLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDRASSR 136 Query: 122 YQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ R + +IG +P+M + + ++ + +VLI GESGTGKELV Sbjct: 137 IRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGKELV 196 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H++S R PF+ LN++A+P+ ++ESELFGHE GAFTGA T R G+FE A+GGTLF Sbjct: 197 ARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYANGGTLF 256 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+G+MP+ Q +LLRVL + + R+G + ++VR++AAT+ +L+ +++G FR+DL Sbjct: 257 LDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKGTFRKDL 316 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RL+V+ + LPPL +RR DIP L HFL+ A + + + AL AWPGN+ Sbjct: 317 YFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAYAWPGNI 376 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N + V+ ++ + DLP E A + D L+ A G Sbjct: 377 RELRNVVEGMMVLDIDGKLDVDDLP----EGIGAGHHEHSEVD----LIQNPA------G 422 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + L+ + ++E+ + AL T G + EAA LLG G TL RK++E Sbjct: 423 NDGLIGRSLNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIRE 470 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 175/479 (36%), Positives = 276/479 (57%), Gaps = 40/479 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ S+R +L+ L+ G E+G + L L D++L D+R+ M G+ + Sbjct: 8 ILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLGDMSGIDV 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK K+ + VI+++A++ + AV+A +GA+D++PKP D E + R++S + Sbjct: 68 LKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRSLSLRTVE 127 Query: 126 QQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q+ + L+ D I+G P M+ ++ ++ +++++ +LI GESGTGKEL+A Sbjct: 128 QERQ--ALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S RA PF+ +N IP++L+ESELFGH KG+FTGA ++G F A GT+FLD Sbjct: 186 AIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ + +Q +LLRV+ DG F +VGG + VD RI++AT++NL Q V +G FREDLF+ Sbjct: 246 EIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLFY 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI +++PPLRER+ DI LA+ F++ +++LG E L L + ++PGNVR+ Sbjct: 306 RLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFPGNVRE 365 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQM---QPDSWATLLAQWADRA--- 413 LEN L E +VA ST+ + + S A +W + Sbjct: 366 LEN----------------------LIERSVALSTTNIILPESLSLAVHKRRWIEGVPGR 403 Query: 414 ---LRSGHQNL-LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + + L E ++ER L AL + G+K AA LLG + +L +L + Sbjct: 404 RFDLEEVTKGVALDEILADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDKLNV 462 >UniRef50_C7PLE1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLE1_CHIPD Length = 489 Score = 304 bits (778), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 179/491 (36%), Positives = 265/491 (53%), Gaps = 35/491 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + ++DD+ +I +L + L G T +GA L+ + KT D++L D R+ DG L Sbjct: 4 ILIIDDEINICTLLSKFLGKHGFKVDTTMSGATALKMMKEKTFDLVLCDYRLKDTDGAQL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY--- 122 L+ I Q +P VII+T ++D+ AV + GA+DYL KP DE + LV +A +H Sbjct: 64 LQDILQINPRTIVIIITGYTDVRVAVDMVKNGAYDYLSKPLYPDEILNLVHKAFAHMDAE 123 Query: 123 --QEQQQP-RNVQL----NG---PTTD--------------IIGEAPAMQDVFRIIGRLS 158 +E P R V NG P D + GE+ +++FR I ++ Sbjct: 124 RERESSMPMRTVSAAPAANGASQPADDGGADGEMLDKSHKYVYGESVGAKELFRQIKLVA 183 Query: 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218 + SV+I GE+GTGKE VAH +H HS R PF+AL+ ++ K+L SELFGHEKGAFT Sbjct: 184 PTDYSVIIFGETGTGKESVAHLIHHHSKRHNQPFVALDCGSLSKELAASELFGHEKGAFT 243 Query: 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIA 278 GA + G FEQA GGTLFLDE+ ++ D+Q LLRV+ + RVG + +DVRII Sbjct: 244 GAINTKIGAFEQAHGGTLFLDEVANLSYDIQVALLRVIQEKVIRRVGNLKEIPIDVRIIV 303 Query: 279 ATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK 338 A+++ L + V +G+FREDLFHR N ++PPLRER ED+P F++ REL Sbjct: 304 ASNEKLSESVAKGRFREDLFHRFNEFTTYIPPLRERVEDLPLFVDAFMRQVERELQKNCG 363 Query: 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQE-VLIQDLPGELFESTVAESTSQM 397 + E +R WPGN+R+L+N R ++ E + + LP E+ ES S Sbjct: 364 KIANEVWECFSRYNWPGNIRELKNVIRRACLLTPEHEDITLSTLPLEMKESF---SQQPY 420 Query: 398 QPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRN 457 + D + + + ++N L + E + L+ + +K +AA+LL R Sbjct: 421 EEDHQVNMSGEL----ISITNENDLKTVALQAEYNKIINVLKEVKYNKTKAAQLLNIDRK 476 Query: 458 TLTRKLKELGM 468 TL KL+ L + Sbjct: 477 TLYNKLRLLNI 487 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 303 bits (777), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 177/468 (37%), Positives = 257/468 (54%), Gaps = 28/468 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+S +R +L L A + NG E L L + DV+L D+ MP +DG Sbjct: 8 ILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMPTLDGPGF 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+++ R+ VI+M+A+ +LD AV ++GAFDY+ KPF DE V + +A + + Sbjct: 68 LKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKAEERLRLR 127 Query: 126 QQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + + + ++ M+ ++GR ++ + VL+ GE+GTGKELVA AL Sbjct: 128 EENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGKELVARAL 187 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+ R PFIA+N + +I+SELFGH +GAFTGAN G F A+GGTLFLDEI Sbjct: 188 HQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGGTLFLDEI 247 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P+ +Q RLLR L + + VG P DVRI+AAT +NL++ + G+FR DLF RL Sbjct: 248 GELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFRSDLFFRL 307 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 VI +HLPPLRER+ DI LA HFL A G L PE +L R AWPGNVR+L Sbjct: 308 AVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWPGNVRELA 367 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + ++ ++ LP E+ + P DR + Sbjct: 368 NFMEKTAIFCRDDKICMEHLPWEI----------RRHP----------RDRGQDMSLKKA 407 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +S +PE R L+ T G++ +AA+LL L K++E +E Sbjct: 408 VSRIEPEYIRRALSV----TGGNRTKAAQLLDISLRNLHYKIREYDLE 451 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 303 bits (777), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 172/467 (36%), Positives = 269/467 (57%), Gaps = 26/467 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + ++DDD+S +L +G G LEA A+ PDV++ DIR+P M Sbjct: 1 MCKKKILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI- 119 DG+ +L+ + + VI++TA+ D++ V A + GA++Y+ KP D+DE V RA+ Sbjct: 61 DGIEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALK 120 Query: 120 -SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 S +E ++ V+ +IG + M++VF++IG LS ++++VLI GE+GTGKEL+A Sbjct: 121 NSELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H + P PFI +N +AI L+ESELFGHEKGAFTGA ++G+FE A GT+FL Sbjct: 181 RAIHDYGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+G++P+++Q +LLR L D F RVGG + R+I AT+++L Q V+ G FREDL+ Sbjct: 241 DEMGEIPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+ ++++PPLR+RREDIP L H ++ ELG + + + WPGNVR Sbjct: 301 YRLSAAKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N + G+ +L + L TV + + A +LR Sbjct: 361 ELRNVLTGAAISTRGETLLDDAILPFLGAGTVQD------------IFPPGAALSLR--- 405 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E+ER + L +T G+ +A++LG R TL +K+++ Sbjct: 406 ---------EVEREHILKILHYTNGNITSSAQILGISRPTLRQKIRQ 443 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 742 0.0 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 680 0.0 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 678 0.0 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 671 0.0 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 668 0.0 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 666 0.0 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 662 0.0 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 662 0.0 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 657 0.0 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 657 0.0 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 655 0.0 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 655 0.0 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 654 0.0 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 654 0.0 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 653 0.0 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 651 0.0 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 650 0.0 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 650 0.0 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 648 0.0 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 645 0.0 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 645 0.0 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 642 0.0 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 642 0.0 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 642 0.0 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 641 0.0 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 641 0.0 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 640 0.0 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 640 0.0 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 638 0.0 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 638 0.0 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 637 0.0 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 636 0.0 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 636 0.0 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 635 0.0 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 635 0.0 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 635 e-180 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 635 e-180 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 634 e-180 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 634 e-180 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_Q6ARB9 Probable two-component system response regulator... 632 e-180 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 632 e-180 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 631 e-179 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 630 e-179 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 630 e-179 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 629 e-179 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 628 e-178 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 627 e-178 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 627 e-178 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 626 e-178 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 626 e-178 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 625 e-177 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 625 e-177 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 624 e-177 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 623 e-177 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 623 e-177 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 622 e-176 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 621 e-176 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 621 e-176 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 620 e-176 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 618 e-175 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 618 e-175 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 618 e-175 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 617 e-175 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 616 e-175 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 616 e-175 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 615 e-174 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 615 e-174 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 615 e-174 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 615 e-174 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 614 e-174 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 613 e-174 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 613 e-174 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 612 e-174 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 612 e-174 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 612 e-174 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 612 e-173 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 611 e-173 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteoba... 610 e-173 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 610 e-173 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 610 e-173 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 608 e-172 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verru... 608 e-172 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 608 e-172 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 607 e-172 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 607 e-172 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 607 e-172 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 606 e-172 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 606 e-172 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 606 e-172 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 606 e-172 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 606 e-172 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 605 e-171 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 605 e-171 UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=... 605 e-171 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 604 e-171 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 603 e-171 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 603 e-171 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 603 e-171 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 602 e-171 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 601 e-170 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 601 e-170 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 599 e-170 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 598 e-169 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 598 e-169 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 597 e-169 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_Q12CJ7 Nitrogen metabolism transcriptional regulator, N... 596 e-169 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 595 e-168 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 594 e-168 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 594 e-168 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_C1A568 Putative NtrC family two-component response regu... 594 e-168 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_D2UGQ5 Probable two-component regulatory system regulat... 592 e-168 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 592 e-167 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 591 e-167 UniRef50_D2R521 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing pr... 590 e-167 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 590 e-167 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 589 e-167 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 589 e-167 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax... 589 e-167 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 589 e-167 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 589 e-167 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 589 e-167 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 589 e-166 UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 588 e-166 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 588 e-166 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 587 e-166 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_Q3B305 Two component transcriptional regulator, Fis fam... 586 e-166 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 586 e-166 UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax... 586 e-166 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 585 e-165 UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candida... 585 e-165 UniRef50_C1A631 Putative NtrC family two-component response regu... 585 e-165 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 585 e-165 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 585 e-165 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 585 e-165 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 584 e-165 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 584 e-165 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 584 e-165 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=... 583 e-165 UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfi... 583 e-165 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 583 e-165 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 582 e-165 UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional... 582 e-164 UniRef50_D2QH48 Two component, sigma54 specific, transcriptional... 582 e-164 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 581 e-164 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 581 e-164 UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulato... 581 e-164 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 581 e-164 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 581 e-164 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 581 e-164 UniRef50_C8PUF3 Nitrogen regulation protein NR n=1 Tax=Enhydroba... 581 e-164 UniRef50_Q7UEQ9 NtrC-like response regulator SasR n=1 Tax=Rhodop... 581 e-164 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 580 e-164 UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Se... 580 e-164 Sequences not found previously or not previously below threshold: >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 469/469 (100%), Positives = 469/469 (100%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM Sbjct: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS Sbjct: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA Sbjct: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE Sbjct: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR Sbjct: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL Sbjct: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN Sbjct: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME Sbjct: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 680 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 344/471 (73%), Positives = 402/471 (85%), Gaps = 2/471 (0%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+G VWVVDDDSSIRWVLERA+ G+ C FE+ +VL+AL S+ PDVLLSDIRMP M Sbjct: 1 MQKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL+LLK IK+++P LPVIIMTAHSDLDAAV+AYQQGAFDYLPKPFDIDE +AL+ERAI+ Sbjct: 61 DGLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAIT 120 Query: 121 HYQEQQQPRNVQ-LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 HY+EQ+QP N + + +D+IGEAPAMQ+V+RIIGRLSRSSISVLINGESGTGKELVAH Sbjct: 121 HYREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAH 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALHRHSPRA APFIALNMAAIPKDLIESELFGHEKGAFTGA+ +RQGRFEQA+GG+LFLD Sbjct: 181 ALHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPLD+QTRLLRVLA+GQFYRVGGYAPVKVDVRIIAATHQ+LE+RV EG FREDL+H Sbjct: 241 EIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYH 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVIR+ LPPLR+R EDIP LAR+FLQ A+ELGVE K LH ++ + W GNVRQ Sbjct: 301 RLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQ 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELF-ESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 LEN CRWLTVM A QE++ QDLP E+ A++ +++ W+ L+ WAD AL G Sbjct: 361 LENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGK 420 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +N+L++A P+ ERTLL +AL +TQGHKQ+AARLLGWGRNTLTRKLKELG+E Sbjct: 421 ENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGIE 471 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 678 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 200/468 (42%), Positives = 293/468 (62%), Gaps = 16/468 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +V VVDD+ S+ L+ L +G + T +G E LE + P +L DIRMP M Sbjct: 1 MAK-LVLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +L+ ++++HP +PVI+MTA+SD ++A + GAF+Y+ KP ++DE ++ +E+A + Sbjct: 60 DGIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATT 119 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + ++ +IG +PAMQ+V++ IGR++ S ++VLI GESGTGKELVA A Sbjct: 120 VTEPLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEA 179 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +SPR PF+ ++ AIP++L+ESELFGHEKGAFTGA+T + G+FE ADGGT+FLDE Sbjct: 180 IHYNSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDE 239 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGD+ +Q +LLR L + F RVGG +VDVRIIAAT+++LE+RV+ G FREDL++R Sbjct: 240 IGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYR 299 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + LPPLRER+EDI L +F+ ++ R+ G + L L + WPGNVR+L Sbjct: 300 LNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N C +MA G + + LP L + + + + L Sbjct: 360 RNVCERAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLP-------------- 405 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E E+ER+ + AL +G+K AR LG R TL K+KELG+ Sbjct: 406 -LKEMVAEMERSAILRALEEYRGNKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 326/474 (68%), Positives = 377/474 (79%), Gaps = 6/474 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+G VW+VDDDS+IRWVLERAL A + CT+FE+ VL AL PDVL+SDI MP Sbjct: 1 MQKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDN 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL ++KQ HP LP+IIMTAHSDL+ AV+AYQQGAFDYLPKPFDIDE + LV+RA++ Sbjct: 61 DGLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALN 120 Query: 121 HYQEQQQPRNVQLN--GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +Y+ QQ + IIGEAPAMQ+V+RIIGRLSRSSISVLINGESGTGKEL+A Sbjct: 121 YYRNQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALHRHSP+A PFIALNMAAIPKDLIESELFGHEKGAFTGA+ +RQGRFEQA GG+LFL Sbjct: 181 DALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPLD+QTRLLRVLA+GQFYRVGGY P+KVDVRIIAATHQ LEQ VQEGKFREDLF Sbjct: 241 DEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 HRLNVIR+ LPPLRER EDIP LAR+FL A++LGVE+K+L P+TE L L W GNVR Sbjct: 301 HRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFEST----VAESTSQMQPDSWATLLAQWADRAL 414 QLEN C WLTVM++ Q +L QDLP +L ++ + T + W LA W AL Sbjct: 361 QLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKTAL 420 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + QNLL + P++ERT+L AL +T+GHKQEAARLLGWGRNTLTRKLKE GM Sbjct: 421 ENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEFGM 474 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 184/468 (39%), Positives = 288/468 (61%), Gaps = 21/468 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + V+DD+ + W LE+ L G T G L+ + +TP +++ D++MP MDGL Sbjct: 5 NKILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGL 64 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--SH 121 +L + K P LP+I++TAH +D A+ A + GA DY+ KPFD+DE ++ +A+ +H Sbjct: 65 EVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNH 124 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 QE+ +LN I+G + A+ DV +I +++ S+ +VL+ GESGTGKE+ A ++ Sbjct: 125 LQEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+ S R PF+ +N AA+P+ L+ESELFGHEKGAFTGA + GRFE A+ GTLFLDEI Sbjct: 185 HQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEI 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 +MPL +Q +LLRVL + +F RVGG +K+DVR+IAAT+++ + +++G FREDLF+RL Sbjct: 245 TEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ +HLPPLRER EDIP LA HF++ + + + PE L WPGN+R+L+ Sbjct: 305 NVLPIHLPPLRERTEDIPLLAMHFIKKFNP---SQEQRMSPEAMGLLISYEWPGNIRELQ 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N ++A G E+ LP E+ + +++ ++ L+ + D + Sbjct: 362 NVIERSIILAQGNEIKPHHLPKEI------QKLDEVKNETTHGLIINFPDDGI------- 408 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E+E+ L+ AL + G++ AA+LLG R+ L + ++ ++ Sbjct: 409 ---SFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 174/471 (36%), Positives = 270/471 (57%), Gaps = 20/471 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + +VDDD + L L+ AG T +GAE + L + DV+++D+ MPGMD Sbjct: 6 KMEKILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMD 65 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ +LK +++ +++T + +V A + GAFDY+ KP DE + V AI Sbjct: 66 GMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKF 125 Query: 122 YQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +++ + ++ + +G++P +Q VF +I +++ + +VLI GESGTGKEL+ Sbjct: 126 KRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELI 185 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +SPR P + +N AIP++L+ESELFGHEKGAFTGA+ R GRFE A+GGT+F Sbjct: 186 ARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIF 245 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM ++Q +LLRV+ + F R+G + VD+RI+AAT+++L + V++ +FREDL Sbjct: 246 LDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDL 305 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI + +PPLR+R+ DIP L F+ A E K + AL WPGNV Sbjct: 306 YYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNV 365 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN + ++++G + +DLP + E + ++ S Sbjct: 366 RELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGG-------------- 411 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A E E+ L+ AL K +AA+LL R TL K+K + Sbjct: 412 --IRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 662 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 198/471 (42%), Positives = 280/471 (59%), Gaps = 21/471 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V VVDD+ S+R L L T NG + + L PDVL++DIRMP Sbjct: 1 MVKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEK 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG LL+QIK +PVI+MTA + A+ A + GAFDY+ KPFD+DE + L++RA++ Sbjct: 61 DGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVA 120 Query: 121 HYQEQQQPRNVQLNGPTT--DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q +T +IIG +P+M++V++ IGR++ S+ +VLI GESGTGKELVA Sbjct: 121 QSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H +S R PFI +N A +P L+ESELFG+EKGAFTGA++++ GRFE A GT+F Sbjct: 181 RAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFF 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ L Q +LLR + + +F RVGG +KV+VRI+AAT++ L+Q V+EG+FREDLF Sbjct: 241 DEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+ + +PPLR+R+EDIP L HFL +E E K E L WPGNVR Sbjct: 301 FRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN +MA G ++ +D+ +T QP L + Sbjct: 361 ELENVVERSIIMARGAIIVPEDIQL--------GATVSQQPTELEILDENLS-------- 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + ++ER ++ AL + A++L R +L K+KELG+E Sbjct: 405 ---LKQIISDVERKVILKALEENNWCRTTVAKVLKINRRSLYAKMKELGIE 452 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 662 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 199/474 (41%), Positives = 285/474 (60%), Gaps = 9/474 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + VVDD++++R VL L+ G T E+G E L L D++++D+RMP +D Sbjct: 4 EKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL+ + P PV+++TAH +D AV A + GAFDY+ KPFD +E +V++A+ Sbjct: 64 GMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRT 123 Query: 122 YQEQQQPRNVQLNGPTT-------DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++ IIGE+P +Q+++ I+ R++ + +VLI+GESGTGK Sbjct: 124 RDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESGTGK 183 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA ALH +S R PFI +N AAIPKDL+ESELFG+E+GAFTGA + GRFE A GG Sbjct: 184 ELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELASGG 243 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIG++P ++Q +LLRVL + +F RVGG + VDVR++AAT+++L++ + G FR Sbjct: 244 TLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFR 303 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF+RLNV+ + LP LR+RR DIP L HF+ L + + PE L AWP Sbjct: 304 EDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASHAWP 363 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+LEN + A G + + DLP E+ A S A A + Sbjct: 364 GNIRELENVVERALLFADGARIRLDDLPEEIRGG--ATSAPGAALPLAAAAADTSAAPST 421 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 G + + A +LER L+ AL+ T G+ AARLL R L K+KEL + Sbjct: 422 PDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMKELNL 475 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 657 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 190/466 (40%), Positives = 290/466 (62%), Gaps = 6/466 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V V+DD++++R VL L G T ENG + L D++++D+ MP + G Sbjct: 1 MAKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L I+ +P +PVII+TAH +D+AV A + GAFDY+ KPFD E ++V +A Sbjct: 61 MEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTN 120 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + ++ + IIG++ +Q+V++II +++ + +VLI GESGTGKEL+A ALH Sbjct: 121 ESARRSVRPDVKARAA-IIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALH 179 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R PFI +N AAIP L+ESELFG+E+GAFTGA T + GRFE AD GTLFLDEIG Sbjct: 180 GASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIG 239 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++P+++Q +LLR + +G+F RVGG +VDVR++AAT+++L+ ++ G+FR+DL++RL Sbjct: 240 EIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLA 299 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ + LP LRERR D+P LARHF++ R L + + + + A L AWPGN+R+LEN Sbjct: 300 VVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELEN 359 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + + A G + +DLP + + T ++ + + A+ +A G ++++ Sbjct: 360 LIERVLLFADGPLITARDLPEPVRQGTGVQAGANL-----ASAVASIDVPTGEVGLKDIV 414 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELER L+ L T G+ AARLL R +L K+KE G+ Sbjct: 415 RMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 289/471 (61%), Gaps = 14/471 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + VVDDD+ +L L G G T +GAE +E + S+ D +L D+RM GM G Sbjct: 2 RAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L IK+ +P +PV+IMTA+S ++ AVSA + GA+DYL KP D+D VERA+ H Sbjct: 62 MEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHL 121 Query: 123 QEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + ++ N++ +IIG++PAM+++F +I ++ + +VL+ GESGTGKELVA Sbjct: 122 RLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVA 181 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH SPRA P +A+N AA+ + L+ESELFGHEKGAFTGA R+GRF AD G++FL Sbjct: 182 KALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFL 241 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ +Q +LLRV+ + + RVGG PV VDVRI+AAT+++L++ V+ G+FREDL+ Sbjct: 242 DEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLY 301 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + +PPLRER +DIP LA+HFL A + K P L R WPGNVR Sbjct: 302 YRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVR 361 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN +++ G+ V ++LP ++ + Sbjct: 362 ELENAVERAVILSVGEYVTERELPL----------SAMREAGGNGAPGGAGGGAPAPGDM 411 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A ++ER ++ LR T G+K EAAR+LG R TL +KLK+ G E Sbjct: 412 AGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYGEE 462 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 195/468 (41%), Positives = 278/468 (59%), Gaps = 17/468 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ + +L AL+ G+ T NG L+ L + D+++SD RMPGMDG L Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMDGPQL 64 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 L +IKQR+P LPVI+MTA+S + AV + + GA+DY+ KPFDIDE V +A+ Sbjct: 65 LGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDIL 124 Query: 124 --EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q+ + + ++G++PA + V + + + S+ ++L+ GESGTGKE+VA A+ Sbjct: 125 KDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+H RA PF+A+N AAIP+ L+ESE+FGH KGAFTGA R GRF+QAD GTLFLDE+ Sbjct: 185 HKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEV 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMPL +Q ++LR L + VG KVDVR+IAAT++NL + V +FREDL++RL Sbjct: 245 GDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV + LP LRER EDI LARHF G PE A+ AWPGN+R+L+ Sbjct: 305 NVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQ 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N T++A GQ + +DLPG LF + S + + Sbjct: 365 NCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSD------------- 411 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A E+E+ + AL+ + G + AA+L+G + +LK+LG++ Sbjct: 412 LEAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQ 459 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 202/479 (42%), Positives = 305/479 (63%), Gaps = 13/479 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V DD+ S+RWVL +AL G T ++G + L + + D+ + DI+MPGM Sbjct: 1 MTLTRILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL LL +I++ L V+IMTA + + AV A ++GA+DY+ KPFD+D A+VE+ Sbjct: 61 SGLDLLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGR 120 Query: 121 HYQEQQQPRNVQLNGPTT-----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + Q ++ +IIG + AMQ +++ IG+++ S I++LI GESGTGKE Sbjct: 121 AREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 +VA A+H +S R PF+A+N AAIP+DL+ESELFG E+GAFTGA+ +QG+FEQA+ GT Sbjct: 181 MVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDMPLD+Q ++LRVL + + RVGG + V+VRI+AAT+Q L++RV++ +FRE Sbjct: 241 IFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ + L PLRERR+DIP L R+FL EL + K L PE A L+R +WPG Sbjct: 301 DLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LENT + +++ + D G E T+ D+ + + R+ Sbjct: 361 NVRELENTIKRAVILSNDPMLTEADFDG---LQPEGEETAMTPQDASLEAIVEAKLRSCL 417 Query: 416 SGHQ-----NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +G + ++ ++ ++ER L+ L T+ ++ +AA +LG RNTL +K+ +L +E Sbjct: 418 TGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 169/471 (35%), Positives = 263/471 (55%), Gaps = 30/471 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + ++DD+ + VL L G T ++G L L D+L++D+++P + Sbjct: 3 TKKRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPDIT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +L+Q+K P LPV+++TA+ + AV A + GAF+YL KP D DE + LV+ Sbjct: 63 GLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFER 122 Query: 122 YQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q ++ + ++ +++G++ AMQ++F +I ++++ +VL+ GE+GTGKELV Sbjct: 123 SQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELV 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H PF+ ++ AA+P+ L+ESELFGH +GAFTGA ++G+ E A GGTLF Sbjct: 183 ARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++PL +Q + LR L + + R+G KVDVRIIAAT+++LE + G++REDL Sbjct: 243 LDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI + +PPLRERR+DIP L HFL + G + + E WPGNV Sbjct: 303 FYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V+ G + + LP +L E + ++ Sbjct: 363 RELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVN------------------ 404 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+E+ L+ L T+ ++ AAR LG R L K+K G+ Sbjct: 405 --------LMEMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 187/473 (39%), Positives = 280/473 (59%), Gaps = 20/473 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V +VDD+ + +L+ L G T N + L+ + ++ PD +L DIR+P Sbjct: 1 MSK--VLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDA 58 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ ++ ++KQ +PVI+MTA + A+ A +QGA DYL KP ++DE V V+++I Sbjct: 59 DGIEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIK 118 Query: 121 HYQEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + + ++ IG++ MQDVF+ IG++ S I+VLI GESGTGKE Sbjct: 119 MQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKE 178 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 +VA +H +S R+ PFI +N A IP+ L+ESELFGHEKG+FTGA + + G+FE A G Sbjct: 179 VVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGI 238 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIG++PL Q +LLRVL + +F RVGG ++VDVRI+AAT++NLE VQEGKFRE Sbjct: 239 VFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFRE 298 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ V LPPLRER+EDI L +F++ AR+ + E + AWPG Sbjct: 299 DLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPG 358 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+++N C VMA +++ D+P + E A +L Sbjct: 359 NVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLE-------------FKNNAKISLD 405 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + L + E+E+ ++ +L ++Q A+ LG R +L K+KE + Sbjct: 406 TNDKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 199/470 (42%), Positives = 290/470 (61%), Gaps = 21/470 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDD+ ++R +L A A G NG L A PDV+L DIRMP MDG+ Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGI 64 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LK+++ PVI+MTA+++++ AV A + GAFDY+ KPFD+DE +V+RA+ Sbjct: 65 KALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 Query: 124 EQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +++ R++ T+ I+ +PAM D+ + +++ S SVLI+GESGTGKEL+A Sbjct: 125 MKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIAR 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S RAK PFI +N AA+P+ L+ESELFGHEKGAFTGA T+RQG FE+A+ GTL LD Sbjct: 185 AIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MPL +Q +LLR+L + +F R+GG+ +KVD+RIIAAT+++L+ V+EG FREDLF+ Sbjct: 245 EIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI + LPPLR+RREDI LA HFLQ + E + + P + LT +WPGN+R+ Sbjct: 305 RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRE 364 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N VM +G + +DLP ++ + + P + Sbjct: 365 LSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPV-----------------GE 407 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E +E+ ++ L +G++ A +LG R L KL+E G++ Sbjct: 408 RNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 651 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 185/475 (38%), Positives = 278/475 (58%), Gaps = 22/475 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M++ + +VDD+S +R L L + T E+G + L + D++++D++MP + Sbjct: 1 MEK--ILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDL 58 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ +L++ K+ P V+++TA ++ AV A + GAF+YL KPF D A++E+A Sbjct: 59 TGIDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKE 118 Query: 121 HYQEQQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 H Q+ + ++ T D IIGE+P M+ + R + R+++S+ SV INGESGTGK Sbjct: 119 HLSLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGK 178 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E++A A+H +S R++ PFI +N AAIP+ LIESE FGHEKGAFTGAN R GRFE A G Sbjct: 179 EVIAQAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKG 238 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TL LDEI ++PL VQ +LLR + + +F RVGG P+KVDVR+I+ ++++++ + R Sbjct: 239 TLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILR 298 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RLNV+ ++LPPLR+R EDI LA +FL+ E +AK E+ L AWP Sbjct: 299 EDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWP 358 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L N VM E+ + L E+ P A+ L+Q +L Sbjct: 359 GNVRELANIVERAVVMTTNSEITPEHL--------YIENNHPNLPLRTASTLSQNTLTSL 410 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 G ELE+ L+ L+ ++ + A +LG TL KL E M+ Sbjct: 411 PVGM------TLQELEKRLIIETLQAQHNNRTKTAEVLGISVRTLRNKLNEYNMK 459 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 189/474 (39%), Positives = 266/474 (56%), Gaps = 24/474 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + V VVDD+ ++R +L L G T NGA+ LE +A + D +L DI+MP MDG Sbjct: 8 KKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDG 67 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 LA L + P VI+M+A+ +D AV A + GA+DY+ KPF DE + +++A Sbjct: 68 LAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERE 127 Query: 123 QEQQQPRNVQLN-------GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + +++ ++ II ++ AMQ V +I +++ +VL+ GESGTGKE Sbjct: 128 RLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKE 187 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA +LH +SPRA I +N IP++L+ESELFGH KGAFTGA+ + G E A GT Sbjct: 188 LVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAHKGT 247 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++P +Q +LLR+L D + VG A +D+RI+AAT +NLE V EG FRE Sbjct: 248 LFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGVFRE 307 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ +HLPPLR+R+EDIP L F+Q ++L L P + L WPG Sbjct: 308 DLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHTWPG 367 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN V+A G + DLP + T A AL Sbjct: 368 NVRELENLIERAVVLAEGDTITPDDLPP-----------------GFGTDSAGGPGDALA 410 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + AQ E+ L+ AL T G++ ++LL +L K+KE G+E Sbjct: 411 GFDGYSIKAAQKIFEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 181/473 (38%), Positives = 275/473 (58%), Gaps = 18/473 (3%) Query: 1 MQR-GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M+ + V++D+++ R + L AG TT E G + LE L+ +V+L+D+ +PG Sbjct: 12 MKNISQILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPG 71 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 + G+ +LK++K++ P VI++T ++AV A ++GAFDY+ KP ++ ++ +A+ Sbjct: 72 VSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAV 131 Query: 120 SHYQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + + + ++ +IIG + MQ VF + ++ + ++LI GESGTGKE Sbjct: 132 EKSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKE 191 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H + R + PF+A+N AIP +L+ESELFGH +GAFTGA + G+F+QA GT Sbjct: 192 LVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGT 251 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIG MPL +Q +LLRVL + + +VG +K+DVR+I+AT+ NLE+ V++G+FR Sbjct: 252 IFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRA 311 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNVI + LPPLRERREDI LAR+FLQ E+ + P L WPG Sbjct: 312 DLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPG 371 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + + DLP + S + Q+ S L D Sbjct: 372 NVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQI---SCPRLTESGMD---- 424 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E +ER L+ +A+ + G K AA LL R TL K+K LG+ Sbjct: 425 ------MPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 178/465 (38%), Positives = 272/465 (58%), Gaps = 27/465 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +DD+ S + L G T T E +E L + T + +L D R+PGMDG Sbjct: 1 MANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL+ +K +P +++TA+ ++ AV A + GA+ YL KP D + + +++ AI Sbjct: 61 IDLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKS 120 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + Q+ ++ P +IIG++ +Q++F I+ ++ S+ +VLI GESGTGKELVA A+H Sbjct: 121 KGIQKLEKIET--PFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIH 178 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 ++S R PFI ++ IP++L+ESELFGHEKGAFTGA + G E A+ GT+FLDEIG Sbjct: 179 KNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIG 238 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++P+ +Q +LLR L + + R+G +KVDVR+I+AT+++LE+ ++EG FREDL+ RLN Sbjct: 239 ELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLN 298 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+R++LPPLRER+EDIP L HFL ++E L PE AL WPGN+R+L N Sbjct: 299 VVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELAN 358 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V++ + I+ LP + E+T ++ NLL Sbjct: 359 VIERAVVLSPSGLISIKHLPRRIQENTGW--------------------TIIKENTFNLL 398 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+E+ L+ AL T ++ +AA +LG R L K+K G Sbjct: 399 -----EVEKALILKALNSTGWNQTKAAEILGISRKQLRTKMKHHG 438 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 280/470 (59%), Gaps = 18/470 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+ + +VDD+ SI L L G T ++G E + L P ++L DI +PG+ Sbjct: 1 MQKS-ILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGI 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +LK IK HP LPV++M+ H ++ AV A + GAFD++ KP +++ + ++ A+ Sbjct: 60 DGMEVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALD 119 Query: 121 HYQEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +++ ++ ++ G++P + ++ +I ++ ++ +LI GE+GTGKELVA Sbjct: 120 LSRLEEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVAR 179 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+HR S RA P + +N AAIP++LIESELFGHEKGAFTGA ++G+F+ A GT+FLD Sbjct: 180 AIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLD 239 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+ DM L Q ++LR+L + +F RVGG +++DVR++AAT+++LE+ ++EG+FR+DLF+ Sbjct: 240 EVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFY 299 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI + +PPLR R+EDIP LA FL A + G K + + A L +WPGNVR+ Sbjct: 300 RLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRE 359 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N L +M + + D+P + E + + A Sbjct: 360 LKNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLA---------------- 403 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 EA+ + E+ ++ LR G+ + A +G R+ L +K+K G+E Sbjct: 404 GSFREAKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKIKAYGLE 453 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 184/476 (38%), Positives = 273/476 (57%), Gaps = 10/476 (2%) Query: 1 MQR-GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M++ + +VDDD + L R + + +G LEA+ + D++L D +MPG Sbjct: 1 MRKMDKILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +GL LK+I++ P+I+MTA+ +D A+ A + GA+DYL KPFD + + A+ Sbjct: 61 KNGLETLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDAL 120 Query: 120 SHYQEQQQP--------RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 + ++ + ++ IIG MQ+V+++IG+++ ++VLI GESG Sbjct: 121 EVNRLMKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESG 180 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKELVA AL+ HS R PF+ +N AAIP+ L ESELFG+E+GAFTGA G+FE+ Sbjct: 181 TGKELVARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERC 240 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTLF DEI +MPL Q +LLR L G+ RVG P+KVDVR++ AT++NLE+ V++G Sbjct: 241 HGGTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQG 300 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 +FREDL+ RL +I +HLPPLRER EDIP L +FL E + + A L Sbjct: 301 RFREDLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSH 360 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP-DSWATLLAQWA 410 AWPGNVR+LENT R V+++G + + L + + P L + Sbjct: 361 AWPGNVRELENTVRRAVVLSSGDVIREEHLRFDSGGHEPSSPEWDKNPWARVERKLEELI 420 Query: 411 DRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L+ G + + +ER LL+ L ++ +AAR+LG RNTL ++K+ Sbjct: 421 PDLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKKF 476 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 183/471 (38%), Positives = 291/471 (61%), Gaps = 24/471 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +VDD+ + +L L G T +G E ++ L D++L+D++MPGMDG+ Sbjct: 3 TILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGME 62 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+++IK R P LPV++MTA+ +D ++A ++GA+ Y+ KPF ++ + V++A++ Y+ Sbjct: 63 LMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRV 122 Query: 125 QQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q+ R ++ +IIG++PAM ++F I +++ ++ +VLI GESGTGKE+VA + Sbjct: 123 VQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKS 182 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +S R AP++A+N AA+ + ++ESELFGHEKGAFTGA +++GRFE ADGGTLFLDE Sbjct: 183 IHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDE 242 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ +Q +LLRVL + F RVGG P++VD+R+IAAT+++L++ V+ FREDLF+R Sbjct: 243 IGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYR 302 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELG--VEAKLLHPETEAALTRLAWPGNVR 358 LNV+ + LPPLRER++DIP L HFLQ A + +HP+ AWPGNVR Sbjct: 303 LNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVR 362 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN ++ + + DLP EL S + P Sbjct: 363 ELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIP------------------V 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E +E+ ++ A+ + + AA++LG G++ L +K+K+ G++ Sbjct: 405 DATLYETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 180/501 (35%), Positives = 292/501 (58%), Gaps = 35/501 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M++ V +VDD+ ++R VL+ L G +G E LE L + DV+++D++MP + Sbjct: 1 MEK--VLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKL 58 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL LL+ + +P PVII+TAH ++ AV A ++GAFDY+ KPFD DE ++++E+AI Sbjct: 59 SGLGLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIR 118 Query: 121 -HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + I+G + ++++++ I +++ + ++LI GE+GTGKEL+AH Sbjct: 119 TRIKNHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAH 178 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+HR SPR +I +N AI K+LIE+ELFG+EKGAFTGA + + G+FE AD GT+FLD Sbjct: 179 AIHRGSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLD 238 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++P D+Q +LL+VL D F RVGG ++VDVRIIAAT+++L + ++EG FREDL++ Sbjct: 239 EIGEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYY 298 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPLRER+EDI L +FL +L ++ K + P+ + WPGN+R+ Sbjct: 299 RLNVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRE 358 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGEL------------------------------FEST 389 LEN + ++ G + +D+P E+ E Sbjct: 359 LENLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERL 418 Query: 390 VAESTSQMQPDSWATLLAQWADRALRSG--HQNLLSEAQPELERTLLTTALRHTQGHKQE 447 V + S+ + ++ L D + ++ + E+E+ ++ L G+ Sbjct: 419 VLMARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECSGNITH 478 Query: 448 AARLLGWGRNTLTRKLKELGM 468 AA+ LG+ R L K+ + + Sbjct: 479 AAKRLGFSRKGLQIKMVKYNL 499 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 177/471 (37%), Positives = 279/471 (59%), Gaps = 24/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + +V+DD ++R + L G T+ ++GA+ L L S+ D+ + D+++PG+DG Sbjct: 2 KEKIIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LLK IK P VII+TA +++ AV A + GAFDY+ KPF +E + ++ER + Sbjct: 62 LTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFR 121 Query: 123 QEQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +++ + + + I+ + M+++F I ++++ + VLI GESGTGKEL+A Sbjct: 122 TLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIA 181 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +A+ + S R + P+I +N AAIP+ L ESELFG+EKGAFTGA ++G+FE A+GGT+F Sbjct: 182 NAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFF 241 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL +Q +LLRV+ DG YR+GG P+K++VR I AT +NL++ ++ KFREDLF Sbjct: 242 DEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLF 301 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +R+NV+ + +PPL+ER+EDIP L FL++ + + G + + P AL +PGNVR Sbjct: 302 YRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVR 361 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L++ +++ + I+ LP E + + + S Sbjct: 362 ELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFS----------------- 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E+ L+ AL+ K EAA+ LG R L K+K G+E Sbjct: 405 ---LKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIKFYGIE 452 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 641 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 193/472 (40%), Positives = 273/472 (57%), Gaps = 19/472 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + + +DD R L L G +NG + ++A +++++D++MP Sbjct: 12 MKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPNG 71 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LLK +K +P VI+MT + +D+AV A + GAFDY+ KP D V RA+S Sbjct: 72 DGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRALS 131 Query: 121 HYQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q++ +++ ++G + M+ +F I ++++S +V+I GESGTGKEL Sbjct: 132 YASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKEL 191 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H +S R P I +N AIP+DL+ESELFGHEKGAFTGA R GRFE A GG++ Sbjct: 192 VARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGSI 251 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM +Q ++LRV+ + QF R+GG + DVRIIAATHQNLE V E +FRED Sbjct: 252 FLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFRED 311 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+R+NVI +HLP LRER DI LA HFLQ A+ E PE A + WPGN Sbjct: 312 LFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWPGN 371 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN L VM E+ ++DLP ++ Q + ++ + Q + + Sbjct: 372 VRELENLIEMLVVMKEDGEIKLEDLPSKIR---------QFKKETQSFKEYQIPEEGID- 421 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ + E+ +L AL T G K AA+LL R TL KLK L + Sbjct: 422 -----FNDVVYQFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKRLNI 468 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 641 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 190/486 (39%), Positives = 273/486 (56%), Gaps = 20/486 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DD+ IR+ L L G +G + L LA +TPD++ DI MPGMDGL Sbjct: 3 ARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 A+L Q+ + P LPVI+++ H ++ AV+A ++GA D++ KP +++ + +RA+ + Sbjct: 63 AVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGD 122 Query: 124 EQQQPRNVQLNGPT---TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ ++ + PT ++ G +P M+ + I R++ + VLI GE+GTGKEL A A Sbjct: 123 LRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARA 182 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S RA P +A+N AAIP++LIESELFGHEKGAFTGA++ + G+FE A GTLFLDE Sbjct: 183 IHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDE 242 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM L Q ++LR+L + QF RVGG+ ++VDVR+IAAT++NLE + G FREDL++R Sbjct: 243 IGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYR 302 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L V + LPPLRER D+P L F Q AR+ GV P+ + AL R WPGNVR+L Sbjct: 303 LRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVREL 362 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVA-----------------ESTSQMQPDSWA 403 N + ++ AG EV LP E + A T Sbjct: 363 RNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQGGD 422 Query: 404 TLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 L D A L A+ E L L G+ A +G R+ L RKL Sbjct: 423 PLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYRKL 482 Query: 464 KELGME 469 K ++ Sbjct: 483 KGYNIQ 488 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 641 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 196/460 (42%), Positives = 273/460 (59%), Gaps = 24/460 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD S +L+ L G G NG + LE + K D++L DIRM MDG+ Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIET 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+IK +P +PV+IMTA+S +D AV A + GA DYL KP D D+ + A++H + Sbjct: 68 LKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEALAHTRLS 127 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + P ++G++PAM+ + I ++ S +VLI+GESGTGKELVA ALH S Sbjct: 128 ESPVTETPAAQF-GMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASS 186 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R++ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEIGD+ Sbjct: 187 ARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 +Q RLLR + + + RVG + VDVR+IAATH++L + V G+FR+DL++RLNV+ Sbjct: 247 PLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVT 306 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +PPLR RREDIP LAR+FLQ A + P+ L AWPGN+R+LEN Sbjct: 307 IDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRELENAVE 366 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 V+ G+ + ++LP + + VA++ H + + Sbjct: 367 RAVVLLTGEYISERELPLAITGTPVADAP-----------------------HGDDSIQP 403 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E+E+ + AL T G+K EAAR LG R TL KL Sbjct: 404 LVEVEKEAILAALERTGGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 187/474 (39%), Positives = 275/474 (58%), Gaps = 26/474 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V V DD+ S+R VL+ AL G T +NG E L DV + DIRMP +DGL Sbjct: 16 RVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPEVDGLQ 75 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +I + P LP+I+MTA + AV+A + GA+DY+ KPF++DE +V RAI Q Sbjct: 76 AFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAIRMQQL 135 Query: 125 QQQPRNVQLNGP--------TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 ++ + I+GE+ +Q+V++IIGR++ S +VL+ GESGTGK + Sbjct: 136 TKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGESGTGKGM 195 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R + PFI +N +IP+ L+ESE+FGHEKGAFT A + G+FE A+GGTL Sbjct: 196 VAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFELAEGGTL 255 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI +M ++Q +LLRVL + +F RVGG +VRIIAAT+++L + + E FR+D Sbjct: 256 FLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISEKSFRKD 315 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV+ + LPPL ER EDI LA +FL+ + E+G PE +WPGN Sbjct: 316 LYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRNYSWPGN 375 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGEL-FESTVAESTSQMQPDSWATLLAQWADRALR 415 +R+LEN +M+ + +L ++LP + E A+ T + DS+ Sbjct: 376 IRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKP----------- 424 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E+E+ ++ A+ T G++ +AA+LL R L K+ E ++ Sbjct: 425 ------LREVLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINENNID 472 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 177/469 (37%), Positives = 266/469 (56%), Gaps = 26/469 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 +G + VVDD+ S+R L + G T E+ E L +A +T D+ L DI+M G D Sbjct: 4 SKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMRGTD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L +++ + P L VI+MT ++ ++ AV+ + GA+DY+ KP D +E LV +A++H Sbjct: 64 GVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKALAH 123 Query: 122 YQEQQQPRNVQLNGPTT---DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + +Q+ ++ D++ + AM+ + I ++ + +VLI GESGTGKE+VA Sbjct: 124 KRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R P + ++ A+ + L+ESELFGHEKGAFTGA ++G+FE A+GGT+FL Sbjct: 184 RAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFL 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ L QT LLRVL + + RVGG P+KVD RI+AAT+++LE+ ++EG FR DLF Sbjct: 244 DEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLF 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV R+ LPPLR+RREDIP L HF + A ++ + L + WPGNVR Sbjct: 304 YRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+A E+ D +L A + S + Sbjct: 364 ELENAVERAMVVAQEPELRETDF-----------------------VLKVKAAATMSSTN 400 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + ++E+ + L T ++ AA +L R TL K+K G Sbjct: 401 GTGTPKTLEDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 189/473 (39%), Positives = 288/473 (60%), Gaps = 8/473 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +VDD+ I W L L+ AG T +G+E + L+ PD+ L DIR+P Sbjct: 1 MEHNRILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDA 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL+Q K R L VI++TA++D+D+AV A + GA DY+ KPF+++ ++++A Sbjct: 61 DGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFE 120 Query: 121 HYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSI-SVLINGESGTGKE 175 Q +++ + ++ ++G + +M ++F++I + + +VLI GESGTGKE Sbjct: 121 KRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H HS RA+APF +N AAIP+ L+ESELFGHEKGA+T A+ R+G FE A+GGT Sbjct: 181 LVARAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDMP +Q ++L+V+ +F R+G ++ DVRIIAATHQ+L V+E +FR Sbjct: 241 VFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRG 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + LPPLRER +DIP L ++F++ E G + + PET A LT WPG Sbjct: 301 DLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L N ++ + + L E+ + + DS A+ +A + Sbjct: 361 NVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHIT 420 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + ELER L+ L + G++ +AA+ L R+TL ++K+ GM Sbjct: 421 IPTGGI---SLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGM 470 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 190/468 (40%), Positives = 281/468 (60%), Gaps = 27/468 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V +VDDD S+R VLE L G T +G E L P ++++D++MPGM G Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQ 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL+++K+R P VI++TA ++AAV A + GA+D++ KPF+ + V +A+ Sbjct: 70 LLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQGL 129 Query: 125 QQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ R ++ IIG +P M++VFR+I R++ + +VLI GESGTGKELVA A Sbjct: 130 SRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARA 189 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S R APF+A+N AAIP+DL+ESELFGH KGAFTGA ++G+F QA+ GTLFLDE Sbjct: 190 IHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDE 249 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G++P+++Q++LLR L + + VGG +K+DVR++AAT+ +LE+ + EG+FREDLF+R Sbjct: 250 VGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYR 309 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+VI VHLPPLRER+EDIP L RHF A + G + PE A + WPGNVR+L Sbjct: 310 LSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWPGNVREL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 ENT + +M + DLP ++ + R R + Sbjct: 366 ENTVERILIMRNADTIHPDDLPEKVRRGRSPQ-------------------RECRVINLP 406 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +LER ++ AL ++ AAR L R+TL ++++ + Sbjct: 407 DEGYSLEQLEREIVVEALERNNWNQSSAARFLRIPRHTLIYRMEKYSI 454 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 171/470 (36%), Positives = 263/470 (55%), Gaps = 12/470 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V +VDD+ IR+ L L G E G E L+ PD++ DI +PGMDG Sbjct: 2 NARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L ++ LPVI+++ H +++ AV+A ++GA+D++ KP +++ V +A+ +Y Sbjct: 62 LEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYY 121 Query: 123 QEQQQPRNVQLN---GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +++ + ++ T ++ G + ++ ++ IGR++ + VLI GE+GTGKE+ A Sbjct: 122 RLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAAR 181 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ++H S R P +A+N AAIP++LIESELFGHEKGAFTGA T + G+FE A GTLFLD Sbjct: 182 SIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFLD 241 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI DM L Q ++LR+L + F RVGG+ VKVDVR+IAAT+++LE + G+FREDL++ Sbjct: 242 EIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLYY 301 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL VI + +PPLR+R +D+ L F+ E G P+ +AL WPGNVR+ Sbjct: 302 RLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVRE 361 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N + +M +GQ V LP E + ++ + Sbjct: 362 LKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMD------- 414 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A+ E L L+ G+ A +G R+ L RKLK ++ Sbjct: 415 --FKAARTAFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNIQ 462 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 183/472 (38%), Positives = 271/472 (57%), Gaps = 23/472 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDD+ S+R L L G +G + + L + D+++SDI+MP +D Sbjct: 26 NQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLD 85 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G LL +K+R +I++TA S + AV A ++GA+DY+ KPF +E +VE A+ Sbjct: 86 GFGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALER 145 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +++ ++ +IIG++ MQ V+ +I ++S S ++VLI GESGTGKELV Sbjct: 146 MDLRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELV 205 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +S R PF+A+ AIP++L+ESELFGHEKGAFTGA +QG FE ADGGTLF Sbjct: 206 ARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLF 265 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI ++P +Q +LLRV+ + +F +VGG +KVDVR++AAT+++L Q V E +FREDL Sbjct: 266 LDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDL 325 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI+V LPPLR+RREDIP L HFLQ + WPGN+ Sbjct: 326 YYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFST---TIPDGVMRRFLDYHWPGNI 382 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LENT V+ E+ LP + + + L + + L Sbjct: 383 RELENTVERCVVLGGKGEITEDSLPPHMLCIS----------GTGDQQLTELPEEGLD-- 430 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + +E+ +L AL T G ++ AA LL ++ +L + G+E Sbjct: 431 ----LDDYLGAIEKDILLKALDRTGGVRKRAAELLHITFRSIRYRLAKFGIE 478 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 197/471 (41%), Positives = 285/471 (60%), Gaps = 7/471 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + +VDDD +R ER LA G T +G + A+ PD+++ D+RMPG+ Sbjct: 4 RTAQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMPGIS 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +++ P LPVIIMTA D A+ A + GA+DY+ KPFDI E + L+E+A++ Sbjct: 64 GLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKAVAA 123 Query: 122 YQEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + V G IIG + AMQD+++ IGR + + +VLI GESGTGKELV Sbjct: 124 GRSMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELV 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+++HS RA PF+ +N AIP+ L+ESELFG+EKGAFTGA + G+ EQA+ GT+F Sbjct: 184 ARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRGTVF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDMPL +Q ++LR+L + R+GG + VDVRIIAAT+++LE V+ G+FREDL Sbjct: 244 LDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RL V+ + +PPLRER DIP L R+FL +RE+G + E A LT WPGNV Sbjct: 304 YYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L NT + + G + ++ E ++ P LA++ R L SG Sbjct: 364 RELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADP---GDSLARYVRRELASG 420 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++L + ++ AL T G++ +AARLLG R TL K+++ G+ Sbjct: 421 RESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEKYGL 471 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 191/464 (41%), Positives = 269/464 (57%), Gaps = 26/464 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + VVDDD S +L+ L G G +G E LE + D++L D+RM MD Sbjct: 4 EKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMAEMD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L++IK +P +PV+IMTA S ++ AV A + GA DYL KP D D +E++++H Sbjct: 64 GIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKSLAH 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 QE ++ + ++G++PAMQ + I ++ S +VLI+G+SGTGKELVA AL Sbjct: 124 AQEVAGEL-PSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARAL 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R+ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEI Sbjct: 183 HASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD+ +Q RLLR + + + RVG + VDVR+IAATH++L Q G+FR+DL++RL Sbjct: 243 GDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + P LR+RREDIP LA HFLQ A K P+ L AWPGN+R+LE Sbjct: 303 NVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRELE 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V+ G+ + ++LP + + +Q Sbjct: 363 NAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAI----------------------- 399 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + E+E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 400 --QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 182/469 (38%), Positives = 274/469 (58%), Gaps = 18/469 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+ + R VL + L G T +N L+ L+ + D+++SD++MP M G Sbjct: 1 MAHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L+ + +P I++TA++ + A+ A + GAFDYL KPFD +E + V++A+ + Sbjct: 61 IDFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYS 120 Query: 123 QEQQQPRNVQL---NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + Q + ++ ++G +PAM+ + I +++ + S+LI GESGTGKELVA Sbjct: 121 KLQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQ 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALHR SPR+ +++N AA ++L+ESELFGHE+GAFTGA ++G E +DGGTLFLD Sbjct: 181 ALHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+ PL++Q +LLRVL + F RVGG A + D+RIIAATH+NLEQ + EG FREDL++ Sbjct: 241 EIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ +HLPPLR RREDIP L++ FL+ +R++G L + + L WPGNVR+ Sbjct: 301 RLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N + G + LP + + Q Sbjct: 361 LQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCS---------------ETAAMPLQ 405 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E +E+ L+ AL +G + +AA LLG R+ L KLK+ + Sbjct: 406 QPLPEHLETIEQKLIQAALIDARGVQAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 182/477 (38%), Positives = 290/477 (60%), Gaps = 19/477 (3%) Query: 1 MQ-RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M+ +GI+ +VDD+ +IR + L G + E LE + + PD++L D+R+P Sbjct: 1 MKPKGIILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPN 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 ++G+ L+++IK++ P +++MT + +D+AV + GA+DYL KPF +D ++VE+A+ Sbjct: 61 INGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKAL 120 Query: 120 SHYQEQQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGT 172 +Q+ ++ T D IIG +P M++++ +I ++++SS + VLI GESGT Sbjct: 121 RRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGT 180 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQA 231 GKELVA A+HR S R F+ +N AA+ + L+E+ELFG+EKGAFTGA T + G FE A Sbjct: 181 GKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIA 240 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 D GT+FLDEIG+M + +Q +LLR+L + QF RVGG +K+DVRIIA+T++NLE+ + G Sbjct: 241 DKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASG 300 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 FR+DL++RL V+ +++PPLRERREDI L ++F+ E G + P+TE L Sbjct: 301 NFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEY 360 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGN+R+L+N ++A G + + + S + + +S A + Sbjct: 361 GWPGNIRELKNVVERGVLIANGSALSPKYV--------ANISVGKKESESLAGITVDGNT 412 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + S L + + +E+ + L+ T + EAAR+LG R TL K+KE G+ Sbjct: 413 DCVSS--DGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 276/479 (57%), Gaps = 14/479 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD++ R L AL G T NGAE LE LA D++L+D+ M GMDGL Sbjct: 37 ARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGL 96 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL+ ++ RHP V+++T + + AV A GA+ YLPKP+D++EA ALV++A+ + Sbjct: 97 DLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKRR 156 Query: 124 EQQQPRNVQLNGPTTDI----IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +Q+ ++ + +G AP MQ + R I +++ S ++VLI GE+GTGKEL A Sbjct: 157 LRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAAR 216 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H S R++A F+A+N A ++L+ESELFGHE+GAF+GA R+G FE A+GGTLFLD Sbjct: 217 MVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFLD 276 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+G+M L +Q +LLR + + RVGG A + VDVR++AAT+++L G+FR DL++ Sbjct: 277 EVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLYY 336 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPL ER ED+P LA++F + AAR+ G A + PET L R +PGNVR+ Sbjct: 337 RLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVRE 396 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSW----------ATLLAQW 409 L N V+ AG + DLP +L + A A+ Sbjct: 397 LHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADEAARM 456 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A + E ER + L G++ AA++L R +L RKLK G+ Sbjct: 457 PGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 187/471 (39%), Positives = 268/471 (56%), Gaps = 27/471 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDD+ + R + L G NGAE L + +P V+L+D+RMP M Sbjct: 1 MSPQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LLK +++ ++MTA + ++ AV A + GA ++L KP D D+ + + + + Sbjct: 61 DGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLE 120 Query: 121 HYQEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 +Q+ ++ DIIGE+P +Q ++ +I R + + +VLI GESGTGKE Sbjct: 121 KRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A ALH+ SPR PFI ++ AA+ ++L+ESELFGHEKG+FTGA ++GRFE ADGGT Sbjct: 181 LIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ VQ +LLRVL +F RVGG +KVDVRI+AATH++L V+ G+FRE Sbjct: 241 LFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ V LPPLR+R+ D+P L HFL+ + G + + L P T AL WPG Sbjct: 301 DLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+LEN V+A GQE+ DLP L +++ Sbjct: 361 NIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGAL----------------- 403 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + +ER + L QG AA +LG + +LKE Sbjct: 404 -----IPGATLAAIEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 635 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 182/471 (38%), Positives = 278/471 (59%), Gaps = 21/471 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + ++DD+ + VL+ L G T T + L L DV+++D++MP + Sbjct: 3 EKAHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMPKVT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G +L+++K+ P +PV+IMTA +++AV + GAFDY+ KPF DE + + A+ Sbjct: 63 GRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNAVEL 122 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +Q R +Q I+G + A++DV ++ R + S +VLI GESGTGKEL+ Sbjct: 123 ARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H SPR PF+++N A+ ++ESELFGHEKG+FTGA +R+GRFEQADGGTLF Sbjct: 183 ARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI ++ D+Q +LLRVL + +F RVGG ++VD+R++AAT+++L V++G FR+DL Sbjct: 243 LDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+++ LPPLRERREDIP L HF+ + + AK E LT WPGN+ Sbjct: 303 YYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNI 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLEN V+ G + + +LP E+ + + Q S LL D Sbjct: 363 RQLENVVESCLVLVPGTVINVDNLPAEIRD-------EESQFKSAVDLLPVQLD------ 409 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L++ ++E L+ AL + +AA LG ++ L KLK+ + Sbjct: 410 ----LADTLEKIEAALIRRALVRADLVQVKAAEYLGISKSLLQYKLKKYAI 456 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 635 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 194/468 (41%), Positives = 274/468 (58%), Gaps = 30/468 (6%) Query: 1 MQRGIV--WVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M RG + VVDDD S +L+ L G G +G + L + K D++L D+RM Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 MDG+A LK+IK +P +P++IMTA S ++ AV A + GA DYL KP D D +E+A Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 119 ISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 ++H +E +IG +PAMQ + I ++ S +VLI+G+SGTGKELVA Sbjct: 121 LAHTRETGAELPSASAAQF-GMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH S R+ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFL Sbjct: 180 RALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ +Q RLLR + + + RVG + VDV +IAATH++L + V G+FR+DL+ Sbjct: 240 DEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + +P LR+RREDIP LA HFL+ A K P+ L WPGN+R Sbjct: 300 YRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTV-AESTSQMQPDSWATLLAQWADRALRSG 417 +LEN V+ G+ + ++LP + + + AE+++++QP Sbjct: 360 ELENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQP------------------ 401 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 ++E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 402 --------LVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 187/472 (39%), Positives = 266/472 (56%), Gaps = 17/472 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 G + VVDD+ S+R L+ L G +G L L + D+L+SDIRMP +G Sbjct: 1 MGRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL Q +Q P LPV+++TA + D AV A + GAFDYL KPF +DE +V A+S Sbjct: 61 LELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSR 120 Query: 123 QEQQQPR-----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ +P V NG IIG +P M ++ +I R++ + +VLI+GESGTGKELV Sbjct: 121 RQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELV 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H+ SP + F+ + +AIP+ L ESELFGH KGAFTGA T R G FEQA+ GT F Sbjct: 181 ARAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ QT+LLRVL + + RVG ++++ R+I+AT+++LE+ V G+FREDL Sbjct: 241 LDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RL V+ + +PPLRER+ D+P L HFL +R G + + + L +PGNV Sbjct: 301 FYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNV 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN M Q + LP L + D +L A +R L Sbjct: 361 RELENIIERGVAMENSQII----LPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEP- 415 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A + ER ++ AL+ K AA LL +L K+K+ ++ Sbjct: 416 -------ALTDFERQMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKKYEID 460 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 177/472 (37%), Positives = 267/472 (56%), Gaps = 31/472 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + DD+ + R ++ + L G T +G E ++ + + DV + D+ MP M+ Sbjct: 3 KKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMPVMN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LK++K P VII+T ++ AV A + GA+DYL KP + E L++RA+ Sbjct: 63 GIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRALEK 122 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ +++ + +IG +PA++ VF++I + + S ++VLI GESGTGKEL Sbjct: 123 RKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKELA 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H++S RA PF+ +N A + + L+ESELFGH KGAFTGA R G FE A+GGTLF Sbjct: 183 AKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ ++ Q +LLRV+ G+ RVG + VD RIIAATH+NL V+EG+FREDL Sbjct: 243 LDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RLNVI + LP LRER++D+ L +HFLQ + G +HPE A+T WPGN+ Sbjct: 303 YFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDWPGNI 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LENT V+A G + I++LP + T + Sbjct: 361 RELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEI------------------ 402 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A E+E+ + L+ HK AA+ LG TL K+K ++ Sbjct: 403 -------ALSEVEKNHIIQVLKEKNWHKPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 634 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 197/507 (38%), Positives = 298/507 (58%), Gaps = 42/507 (8%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASK-TPDVLLSDIRMPGM 60 + +VDDD IR+ L R L G T +G E +E + PD+++ D+RM G+ Sbjct: 6 NMSTILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGI 65 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ L+ ++ L +++MTA A+ A + GA+DY+ KPFD+D+ + + E+AIS Sbjct: 66 SGIETLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAIS 125 Query: 121 HYQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q+ + + D I+G +PAMQ+VF++IG+++ S +VL+ GESGTGKEL Sbjct: 126 SSQDLKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKEL 185 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A +++HS R+ PF+A+N AAIP +LIESELFGHEKG+FTGA T R GRFEQ D GT+ Sbjct: 186 IAKCIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTI 245 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM L QT++LRVL +G+ RVGG +KVDVR+IAAT+++LE+ V++ +FRED Sbjct: 246 FLDEIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFRED 305 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV R+ +P L+ER+ED+P + LQ +E + P+ AL WPGN Sbjct: 306 LYYRLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGN 365 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELF---------------------------EST 389 VR+L N V+A G +L++DLP + +++ Sbjct: 366 VRELGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEPQAS 425 Query: 390 VAESTSQMQP--DSWATLLAQWADRALRSGHQNLLSEAQPE--------LERTLLTTALR 439 AE+ S+ +P AT + + +L + + L E + +ER ++ A+ Sbjct: 426 AAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAIG 485 Query: 440 HTQGHKQEAARLLGWGRNTLTRKLKEL 466 T G++ AA +LG RNTL ++L E Sbjct: 486 ETGGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 162/474 (34%), Positives = 269/474 (56%), Gaps = 22/474 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALAS-KTPDVLLSDIRMPG 59 M+ + VV+D ++R L A G +G ++ L+ D++++D++M Sbjct: 2 MKNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKK 61 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 ++GL +L +K +P VI++TA+ + AV A ++GA+DY+ KPF E + + + A+ Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 120 SHYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + +++ + V+ IIG + M +V ++ +SR+ +VLI GESGTGKE Sbjct: 122 EKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKE 181 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A A+H + PR+ PF+ +N A+P++L ESELFGH KG+FTGA + G F A GT Sbjct: 182 LIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGT 241 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIG+ Q +LLR L DG+ +VGG + VDVRIIAAT++NLE+ V +G+FR+ Sbjct: 242 IFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRK 301 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+R+NVIR+HLP L+ER+EDIP L +FL++ +L + ++ A L WPG Sbjct: 302 DLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPG 361 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L+N ++ Q + ++ LP +A ++ Sbjct: 362 NIRELQNIVERAVALSKNQVIGVEALPL-----------------PTGGFVAHNSNPERD 404 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ + E E E+ + A+ G++ + +++LG TL RK+K+ ++ Sbjct: 405 VTVKSSIVETLSEQEKNAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKIK 458 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 180/471 (38%), Positives = 270/471 (57%), Gaps = 24/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +++D+ S+R L L AG T E G E ++ + + DV+++D+R+PG DG Sbjct: 1 MKKILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +LK +++ P V+++T ++D+ AV A + GAFDY+ KPF+ ++LVER + Sbjct: 61 LEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQT 120 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ +I+ +P+M VF +I +++ SV+I GESGTGKELVA Sbjct: 121 AHVEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +A+H SPR PFI +N AAIP++L+E+E+ G+EKGAFTGA ++G+ E ADGGT F Sbjct: 181 NAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFF 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM +Q +LLRVL F RVGG PV VD+R I AT + L +++GKFREDL+ Sbjct: 241 DEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +R+NV+ + LPPLRER +DIP L F+ R+ G + + PE L +PGNVR Sbjct: 301 YRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L++ + + + LPGE+ E + A + G Sbjct: 361 ELKHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWR--------------------GD 400 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L ++ E ER + L+ T G K AA+ LG R TL RKLKE ++ Sbjct: 401 AGALESSRKETERQTIINVLKKTGGRKMAAAKALGISRETLWRKLKEYNVD 451 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 170/469 (36%), Positives = 260/469 (55%), Gaps = 16/469 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+ + R L T + G E L+ + D+L+ D+ MP MDGL Sbjct: 3 ARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L+ +K+RHP + VI+MT S++ AV A + GAFDYL KPFD DE +V RA+ Q Sbjct: 63 EVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERRQ 122 Query: 124 EQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q+ R ++ +IIG +P MQ VF +I + + ++ +VLI GESGTGKE++A Sbjct: 123 LMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+ ++ + ++L+ESELFGH KG+FTGA ++G F+ A+ GTLFLD Sbjct: 183 AIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E G++PL Q +LLRV+ + +F VG K +VR+I AT+++L+ V EG FREDL++ Sbjct: 243 EFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R+NV +H P LRERR+DIP LA HFL++ ELG + + L WPGNVR+ Sbjct: 303 RINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LENT + ++++ + L + S + D L+ + Sbjct: 363 LENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDE------------LKRIKK 410 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ E+E+ + L+ + +A G R +K+ + Sbjct: 411 IAREKSVEEVEKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKKYNI 459 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 185/469 (39%), Positives = 274/469 (58%), Gaps = 28/469 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDDD R +L+ L G T +G EVL L D++L D++MP +DG Sbjct: 1 MKKILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 LA L + Q++ +PVI++TA S ++ A+ A ++GAFDY+ KP DID + +A+ Sbjct: 61 LATLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQK 120 Query: 123 --QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q + +IIGE+ MQ++F I ++ S ++L++GESGTGKELVA A Sbjct: 121 ISPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +HRHS R + I +N AA+ ++L+ESELFGHE GAFTGA ++G FE+AD GTLFLDE Sbjct: 181 IHRHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM L Q ++LRVL +G+F RVGG +KV+VRIIAA+H+NLE+ ++EG FR+DLF R Sbjct: 241 IGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+V+ +HLP LRER DIP LA FL + ++ + K E L WPGN+R+L Sbjct: 301 LSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIREL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN+ ++ G+++ +LP + F + RS + Sbjct: 361 ENSIERGVILCLGEQITAHELPPQFFRN--------------------------RSPGEL 394 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++E+ + AL + +K A+ LG R TL K+++ G+E Sbjct: 395 SSRDTLRDVEKRAIQQALARSGFNKSATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 274/465 (58%), Positives = 335/465 (72%), Gaps = 6/465 (1%) Query: 1 MQRG-IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + +W++DDD SIRWVL +A +G FE E+ AL SK PD ++SDIRMPG Sbjct: 1 MSQAQHLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 DGLALLKQIKQR P LP++IMTAHSDLD AVSA++ GAF+YL KPFDI+EA +V +A+ Sbjct: 61 TDGLALLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKAM 120 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +H + + V DIIGE+ MQDVFR IGRLS SS+SVLI GE+GTGKE VA Sbjct: 121 AHRSKPE--VRVSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVAR 178 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH+HSPR+ PFIALNMAAIP DL+ESELFGHE+GAFTGA+ R GRF QADGGTLFLD Sbjct: 179 ALHKHSPRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLD 238 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPL VQTRLLRVLA+GQFY VG + PV+V+VR+IAATH++L++ V +FREDL+H Sbjct: 239 EIGDMPLSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYH 298 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI++ LP LRER++DIP LAR+FL+ +A EL V K L A L WPGNVRQ Sbjct: 299 RLNVIQLRLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQ 358 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN CRWLTVMA Q+V +LP EL E + Q + W LLA + ++ + Sbjct: 359 LENVCRWLTVMAPAQQVSPDELPHELLEQSEQLENGQSTGN-WRELLAH--ELRTQTHNY 415 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + ++ ++ER L AL GHKQ+AA LGWGRNTLTRKLK Sbjct: 416 DNMTPIIQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLK 460 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 264/469 (56%), Gaps = 26/469 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VDD+ L L+ G +G + L PDV+LSD+ MP Sbjct: 1 MGSARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPET 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL+ +K+ P PV+ +T +DAAV + ++GA+D++ KP D ++RA+ Sbjct: 61 DGLWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALE 120 Query: 121 HYQEQQQPRNVQLNGP---TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ + ++ ++D+I ++ M+ V ++ +++ S SV I+GESGTGKE+V Sbjct: 121 KKETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVV 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 + A+H S R PFIA+N A+IP LIESELFGHE+GAFTGA+ R G FE A GGTLF Sbjct: 181 SRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+G++P+++Q +LLRVL +G+ R+GG ++VDVR++ AT+++L+Q ++ G+FREDL Sbjct: 241 LDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RLNV ++HLPPLRERR+D+P L +HF+ + G +HPE L WPGN+ Sbjct: 301 YFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNI 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N ++ G+ + + LP ++ + T ++ Sbjct: 361 RELRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLP------------------- 401 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + +ER + +L+ +K A +LG TL KL Sbjct: 402 ----FGLSLDAVEREYILGSLQRNGNNKARTAEVLGVSEKTLYNKLNRY 446 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 180/471 (38%), Positives = 280/471 (59%), Gaps = 27/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VV+D+ +R V+E L AG + E L+ + D++L+D+++P MDG Sbjct: 2 KKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDR--ADMVLTDLKLPNMDG 59 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L I++++ +PV++MTA +++ AV A + GA D+L KPF +D + +V++A+ Sbjct: 60 QEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVR 119 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +++ R ++ +I+G +PAMQ++F I R+ S +VL+ GESG GK+L+A Sbjct: 120 ALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H HSPR P + +N AIP++L+ESELFG+EKGAFTGA T + G+FEQAD GT+FL Sbjct: 180 RAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+P +Q +LLRVL + +F R+G +DVR++AAT+Q+L +++G FREDL+ Sbjct: 240 DEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ +++PPLRER+ DIP LA HF+ A + G + + + L WPGNVR Sbjct: 300 YRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNVR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN VMA G ++ D+ E A+ H Sbjct: 360 ELENVIERSLVMATGTQLDADDIKLESAPRPRAQGN---------------------DNH 398 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + + E+ ++ ALR G+K +AARLLG RN L +L ++G+E Sbjct: 399 FLPEGLSLDQYEQEIIREALRRADGNKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 175/466 (37%), Positives = 276/466 (59%), Gaps = 27/466 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDDD I +++ L G T T + E L + + D++L D MP + GL Sbjct: 3 KRILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + ++K+R PVI+MTA+ L+ AV A ++GAF Y+ KP + +E ++++A+ Sbjct: 63 EFIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSD 122 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 +++ ++ + +TDII E+P M+ V +++ +VLI GESGTGKE++A+ +H+ Sbjct: 123 LKKELNELK-SLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHK 181 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 +S R + PFIA+N AIP +L+ESELFG++KGAFTGANT ++G E+A+GGTLFLDEIG+ Sbjct: 182 NSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGE 241 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 +PLD+Q +LLRVL + + +G P K+DVR IAAT+++L++ V+EGKFREDL++R+NV Sbjct: 242 LPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINV 301 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 I +H+PPLRER+EDI LA++F+ G+ K L + L + GNVR+LEN Sbjct: 302 IPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENI 361 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 + G+E+ D+P + + R + S Sbjct: 362 IERAVLTTEGEEIT--DIPVTVSK------------------------RYILSQELKPFK 395 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 EA+ E E + L L T + +A+++ G R + R +K G+E Sbjct: 396 EAKKEFEESYLKNLLEKTDFNISKASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 185/467 (39%), Positives = 266/467 (56%), Gaps = 22/467 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + V DDD SIR +L L G + +G +V++ + +PD++L D+RMP +D Sbjct: 4 NNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKID 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ +LKQ++ R +P+I+MTA + + A Q GA+DY+ KPFD+D+ + R Sbjct: 64 GIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRFFEQ 123 Query: 122 YQE----QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + T+ IIG +P MQ+V++ IG ++ S +VLI GE+GTGKELV Sbjct: 124 QKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELV 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H +S ++ P + +N AA+P+ L+ESELFGHEKG+FTGA+ R+GRFE A GT+F Sbjct: 184 AETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+M L Q +LLRVL + +F RVGG + +KVD R+IAAT++ LE+ V GKFREDL Sbjct: 244 LDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI +HLPPLRER+EDIP L +FLQ + E L WPGNV Sbjct: 304 FYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LENT ++A G + L + + D + Sbjct: 364 RELENTIERAVILAQGGVITTHHLVFSQIRT------------------GRNIDLSEVID 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 L EA +E ++ AL +G AA +L + L RKL+ Sbjct: 406 KTRSLDEAMRIIESKIILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 186/474 (39%), Positives = 277/474 (58%), Gaps = 24/474 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + VV+D S R +L L G T +G E ++++A D++L D +MPGM Sbjct: 1 MKSLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +L+++K+ +P V+I+TA+ ++ AV A + GA DY+ KP + DE + L++R Sbjct: 61 DGMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAE 120 Query: 121 HYQEQQQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 ++ ++ II + M + + R++ S +VL+ GESGTGKE Sbjct: 121 RRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A +H+ SPR+ P I +N A+P+ LIESELFGHEKGAFTGA + R GRFE+ADGGT Sbjct: 181 LLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ + VQ +LLR L + +F RVGG ++ DVRII+AT+++LE V+E KFRE Sbjct: 241 LFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ + +PPLRERREDIP L HFL+ A E G + + E L + +PG Sbjct: 301 DLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN V+A + + ++DLP F +TS P+ Sbjct: 361 NVRELENIIERAVVIARNEIIYMEDLP---FREDTLVATSGGVPEEG------------- 404 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + L A LE+ ++ A+ H+ AA +LG L KLK+ G++ Sbjct: 405 ---EGRLRGAIENLEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 197/479 (41%), Positives = 287/479 (59%), Gaps = 13/479 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+ +R +R LAG G G + ++ + + P++++ D+RMPGMDG Sbjct: 1 MAKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+ I++ LPV+IMTA+S + A+ A + GAFDY+ KPF+I + +AL+E+A+ Sbjct: 61 LTALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAG 120 Query: 123 QEQQQPRNVQLNGPT--------TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + + ++ +G ++G + AM V++ IGR + + VL+ GESGTGK Sbjct: 121 RRMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+++HS R + PF+ +N AIP L+ESELFG+EKGAFTGA R G+ EQA+GG Sbjct: 181 ELVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGG 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 T+FLDEIGDMPL +Q +LLR+L + Q R+GG P+ VDVRIIAAT+ +LE V +G+FR Sbjct: 241 TVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RL V+ + LPPLRER EDIP LAR+FL +RE+ + + PE A L WP Sbjct: 301 EDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L N+ V + G + DL L S S+ + Q + Sbjct: 361 GNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELI 420 Query: 415 R-----SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 R S N+ + R ++ AL T G++ AARLLG R TL K+++ G+ Sbjct: 421 RRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGL 479 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 174/473 (36%), Positives = 261/473 (55%), Gaps = 11/473 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R V ++DD+ +R + AL G NG + ++ + + D++++D+RMPG Sbjct: 1 MTRS-VLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGS 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +++ K+ VI++TAH +D AV A + GA DY+ KPF +DE + V+RA Sbjct: 60 DGLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATK 119 Query: 121 HYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +Q+ ++ ++G+ M+ V + ++ + +VLI GESGTGKE+ Sbjct: 120 VQALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEV 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A+A+HR+SPR I ++ AA+P+ L+E+ELFGHE+GAFTGA R GRFE A GTL Sbjct: 180 IANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTL 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++ VQ +LLRVL + +F RVGG + DVR++ AT +NL++ V+ G+FRED Sbjct: 240 FLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV++V LPPLRER+EDI LA H LQ + + K L ++PGN Sbjct: 300 LFYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGN 359 Query: 357 VRQLENTCRWLTVMA-AGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 VR+LEN +A G E+ DL G+ + S + Sbjct: 360 VRELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPL-----QSGCGFCQEGVSNVTN 414 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + L+E + ER + L + A++ LG R L K K G+ Sbjct: 415 ARQTGTLAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKRYGL 467 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 170/466 (36%), Positives = 272/466 (58%), Gaps = 20/466 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DDD ++ V+ G + +G + LE+LA P ++++D+RM + G Sbjct: 1 MARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L++ ++ P PVI++TA+ ++ A+ A + GA+DY+ KPF +DE ++RA+ + Sbjct: 61 LDILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQ 120 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 ++ RN++ +IIG + MQ+++ +I +++ + ++LI GESGTGKELVA Sbjct: 121 SLVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH +S R PF+A+N +A+P++L+ESELFGH+KG+FTGA + G FE+A+GGT+FL Sbjct: 181 RALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ M +QT+LLRVL + Q RVG V ++VR++AAT++ L +++ G FREDL+ Sbjct: 241 DEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL VI V +P LRER +DIP L HFLQ A + G EAK + P+ L + WPGNVR Sbjct: 301 YRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN + + DLP ++ A + + Sbjct: 361 ELENAVERACALCDDALIRTTDLPPQVIRHATAPP----------------VEHSGTLPV 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 L E E ER + ++ +++AA++LG TL RKL+ Sbjct: 405 GQTLDEYIREQERRYIEETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 190/468 (40%), Positives = 280/468 (59%), Gaps = 16/468 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + VDD+ S+ +LE +L AG T +G E LE + ++ D +++D+ MP MD Sbjct: 4 STKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMPRMD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LLK++++ LPVII+TA ++ +A+ A + GA DY+ +PFD+ E ++RA+S Sbjct: 64 GLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRALSF 123 Query: 122 YQEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + R ++ + TT +IG +PAMQ + I +++ +VL+ GE+GTGKELVA A Sbjct: 124 SRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARA 183 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H SPR A F+A+N AAIP +++ESELFGHEKGAFTGA R G+FE ADGGTLFLDE Sbjct: 184 IHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLFLDE 243 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 + +MP+ +Q +LLR L + R+GG P+ VD+R++AAT++N +++GK REDL++R Sbjct: 244 VTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDLYYR 303 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV R+ LP L+ R+ DI LA HFL + + L + WPGNVR+L Sbjct: 304 LNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQAVQVLMQYDWPGNVREL 356 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN +++ Q++ Q LP E+ S AT L AD A + Sbjct: 357 ENVLERAAIISGNQQIQPQHLPAEMLNSNGEFID--------ATALGHNADTAEAPQNPL 408 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L A +LER L+ AL T G+K +AA+LL +L KL + G+ Sbjct: 409 CLPNAVEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQYGI 456 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 267/470 (56%), Gaps = 22/470 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDDD+ R L L G T NG + + + + D++ D++MPGM Sbjct: 1 MSVEKIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L+++K VI+MTA+ +++AV A ++GA+DY+ KPF D+ L+ R Sbjct: 61 DGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNE 120 Query: 121 HYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + + ++ + + + M ++ + ++++S SVLI GESGTGKEL Sbjct: 121 RQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H SPR + PFI +N AA+ + L+ESELFGHE+GA+TGA R GRFE A+ GTL Sbjct: 181 VARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDE+ ++ ++Q +LLRVL + +F RVGG +K+DVRI+A T+++L + +Q+G FRED Sbjct: 241 LLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV+ +HLPPLRERREDIP LA +L+ + E K + L++ WPGN Sbjct: 301 LFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L+N + VM + +E+ +++ S + S Sbjct: 361 VRELKNIMQRAVVMGSSEELGLENF------------------TSLIDIKKSEHTMCNDS 402 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + ++ + E+ L+ T L T G+K +AA LL TL KL + Sbjct: 403 VNIKKNGQSIEDAEKELIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNKY 452 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 184/471 (39%), Positives = 282/471 (59%), Gaps = 31/471 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDD+ +R L L G +G +E L S+ +++ D++MPGMD Sbjct: 4 ETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMPGMD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +L+ K+ P L V+IMTA++ +D AV+A + GA+DYL KPFD +E ++++ +S Sbjct: 64 GLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKIVSQ 123 Query: 122 YQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ + ++ D++ ++PAMQ VF + +RS+ ++L+ GESG+GKE++ Sbjct: 124 QSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVL 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H SPRA PF+A++ AA+ + L+ESELFGHEKG+FTGA + R+G+FE A GGTLF Sbjct: 184 ARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTLF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+GD+ +Q LLRVL + +F+RVGG P++VDVRIIAAT+++L + EGKFREDL Sbjct: 244 LDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI + +PPLRERREDIP L +F++ + E+ + + P+ AL WPGNV Sbjct: 304 FYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N V+A G + + DL L + Sbjct: 364 RELRNVLERGAVVATGTVIQLSDL---------------------------GLPTRLEAA 396 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + E+E+ + L H G+ ++AR+LG R TL K+++ G+ Sbjct: 397 SKPGTLASLEEVEKRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGL 447 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 626 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 186/467 (39%), Positives = 281/467 (60%), Gaps = 19/467 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VVDD+ SI L L G +G E LE L TPD++L DI MPGMDG Sbjct: 2 KPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 LA+L++IK+ H LPVII++ H +++ AV A + GAFD++ KP ++ + ++ A+ + Sbjct: 62 LAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFH 121 Query: 123 QEQQQPRN-VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + +++ Q T+ + G + A++ + I R + ++ +VLI GE+GTGKEL A + Sbjct: 122 RLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMI 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+ S R+ P + +N AAIP+DLIESELFGHEKGAFTGA+ R+GRF+ A+GGTLFLDEI Sbjct: 182 HQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L Q ++LR+L + F RVGG ++VDVR++AAT++++++ ++ G+FR+DL++RL Sbjct: 242 GDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRL 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + +PPLR+R +DIP L FL A E + K + P L + +WPGN+R+L Sbjct: 302 NVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELR 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + +M GQ + +DLP + F + + + + P AT Sbjct: 362 NFIERMVIMTPGQRIGPRDLPLD-FLNRLPKPPEEAGPYQCAT----------------- 403 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L EA+ ER L L + A +G R+ L RK+K LG+ Sbjct: 404 LREARSVFERAYLLRKLDEFAWNVSLTAAQVGLERSHLHRKMKALGI 450 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 626 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 187/488 (38%), Positives = 266/488 (54%), Gaps = 23/488 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + VVDD+ ++R L AL+ +G T ENG LE + + PD++++DIRMP M Sbjct: 1 MGR-KILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +L+QIK R P LPV+I+T ++ ++ AV A +QGA DY+ KPF ++ V + Sbjct: 60 DGIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFK 119 Query: 121 HYQ---------EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 Q +IG + ++ S +VL+ GESG Sbjct: 120 QRQGEAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESG 179 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKE+ A +H S R PF+ALN AA+P+ L+ESELFGHEKGAFTGA ++G+FEQA Sbjct: 180 TGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQA 239 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTL LDEIG++PL +Q +LLRVL + + R+GG PVKVDV ++A T+++L V+EG Sbjct: 240 HGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREG 299 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 FREDLF+RLNVI + LP +RER EDI LA HF++ AK L + Sbjct: 300 NFREDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEY 359 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGNVR+LEN +++AG E+ D + A + + + + A Sbjct: 360 QWPGNVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAA 419 Query: 412 RALRSGHQNL-------------LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNT 458 L N + ++ER ++ ALR T ++ AA++LG T Sbjct: 420 ADLALAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRT 479 Query: 459 LTRKLKEL 466 L KL E Sbjct: 480 LRNKLNEY 487 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 626 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 268/468 (57%), Gaps = 26/468 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V V+DD+ LE L G T ++G E L+ + + D++L+DI+M +DG Sbjct: 3 KVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFE 62 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L++ K +P VI++T ++ ++ AV+A +QGAF Y+ KPF +D ++ A + Sbjct: 63 ILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVKL 122 Query: 125 QQQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 +++ + ++ + II + M + I +++ + +VLI GESGTGKEL A + Sbjct: 123 KKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYI 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R K PF+A+N A ++L+ +ELFGHEKGAFTGAN +++G E A G+LFLDEI Sbjct: 183 HLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 +M L +Q +LLRV+ + +F+R+G P+KVDVR IAAT++++++ V+ GKFREDL++RL Sbjct: 243 TEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLRER++DIP L +F + + + E + E L +PGNVR+LE Sbjct: 303 NVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRELE 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V+ ++ ++ LP +L E + T + Sbjct: 363 NIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFM-------------------- 402 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ELE+ + LR +K AA++LG R +L RKLK G+E Sbjct: 403 ---SLEELEKEYIKWILREVGNNKTVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 182/470 (38%), Positives = 263/470 (55%), Gaps = 10/470 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDD+ S+R L+ L G + + G LE LA + D+L+SDIRMP +G Sbjct: 1 MKRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL + K+ P LPV+++TA + D AVSA + GA+DY+ KPF +DE +V A+S Sbjct: 61 LELLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSP 120 Query: 123 QE---QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q + V IIG +P M+ ++ II R++ + +VLI GESGTGKELVA Sbjct: 121 QPLPAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+HR SP + F+ + +AIP+ L ESE+FGH KGAFTGA + R G FEQA+ GT FLD Sbjct: 181 AIHRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ +QT+LLRVL + + RVG ++ +R+I+AT+++LE+ V G+FREDLF+ Sbjct: 241 EIGELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V+ + +PPLRER+ D+P L HFL AR + + L +PGNVR+ Sbjct: 301 RLAVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN M Q +L + L T++ +P+ + Sbjct: 361 LENIIERGVAMENSQIILPESL-------TLSGHRRSREPEPAGGTVDDKRQEIAEEVFS 413 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +LER ++ AL K AA LL +L K+K+ G++ Sbjct: 414 RGLEPTLADLEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKKYGID 463 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 182/473 (38%), Positives = 274/473 (57%), Gaps = 26/473 (5%) Query: 1 MQRGI--VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M + + V+DDD +R +L LA AG T +G E + L S++ +V+L+D++MP Sbjct: 1 MSQPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMP 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 G+ +L+Q +P V+++T H +++AV A ++GA+DY+ KPF+ DE + V+RA Sbjct: 61 HFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRA 120 Query: 119 ISHYQEQQQPRNVQLNGPT---TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 H + +Q+ R +Q +++GE+P ++ + +I +++ S +VLINGE+GTGKE Sbjct: 121 TEHARLRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A +H+ S R K PF+A+N A+P+ L+ESELFGH KGAFTGA+ + G FE D GT Sbjct: 181 LAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEI M L+ Q +LLRVL +G F +VGG P + DVR+IAA+ + L + V G FR Sbjct: 241 LFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRR 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + LPPLR+RREDIP LA HFL + + + + L +WPG Sbjct: 301 DLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + GQE+ + LP L + L Sbjct: 361 NVRELENAVERALLFCPGQELQAEHLPP---------------------LETGGEEAELH 399 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + S +E+ L+ AL+ GH+ + A LLG +L RK+K+ + Sbjct: 400 TTADDAKSLTMASMEKKLIIKALQRANGHRGKTAELLGISPASLWRKIKKYEI 452 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 183/468 (39%), Positives = 264/468 (56%), Gaps = 26/468 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VVDD+ + R L L+ G +G E L L P +L+D+RMP MDG Sbjct: 12 KERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDG 71 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL++ +++ ++MTA + ++AAV A + GA +YL KP D++ + ++E+A+ Sbjct: 72 INLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKL 131 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + Q+ N++ +I+G+AP + V+ ++ R + + +VLI GESGTGKEL A Sbjct: 132 RLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFA 191 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH SPRA FI +N AA+ + L+ESELFGHEKGAFTGA ++GRFE ADGGTLFL Sbjct: 192 QALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFL 251 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ +Q +LLRVL +F RVGG +KVDVR++AAT+++L V+ G+FREDL+ Sbjct: 252 DEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLY 311 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ V LPPLR+R+ DIP L HF+ ++ G + + L P T A+ WPGNVR Sbjct: 312 YRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVR 371 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+ G E+ DLP L E Sbjct: 372 ELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGAL-------------------- 411 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + E+ER + L G AA +LG + +LKE Sbjct: 412 --IPGATLYEIEREAILRTLEMVGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 181/471 (38%), Positives = 271/471 (57%), Gaps = 27/471 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M ++ +VDDD +R ++ LA G+ +GAE E + +T D++++D+ MP + Sbjct: 1 MPDPLILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQI 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL Q +P V+++T + +++AV A + GA+DYL KPF+ D+ + +V+RA+ Sbjct: 61 DGMELLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALV 120 Query: 121 HYQEQQQPRNVQLNGP---TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q + R ++ +++G + M + +I R++ +VLI GE+GTGKEL Sbjct: 121 RLRLQDENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELA 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +HR S R F+ +N A+P+ L+ESELFGH +GAFTGA+ ++G E AD GTLF Sbjct: 181 ARMIHRLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI Q +LLRVL +G F RVG + P VD+R+IAA++ LE+ VQ G+FR DL Sbjct: 241 LDEINTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNV+ + LPPLRER DI LA +FL AR+ GV+ + PE +L WPGNV Sbjct: 301 FYRLNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNV 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +MA G E+ Q LP T S+S + A Sbjct: 361 RELENIIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLPMA-------------- 406 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER + L+ T GH+ +A++LLG +L RK+K+ G+ Sbjct: 407 ----------EVERRHIIRVLKATAGHRGKASKLLGISLASLWRKVKQYGL 447 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 189/470 (40%), Positives = 273/470 (58%), Gaps = 30/470 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V VVDD ++R L AG E+GA + + ++ DV+L+D+RMP +DG+ Sbjct: 29 GKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGM 88 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L+ ++Q P VI+MTA+ +++AV A ++GA+D+L KPF E + V +A+ + Sbjct: 89 EVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRR 148 Query: 124 EQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + I+G +PAM++V + R++ + +VL+ GESGTGKELVA Sbjct: 149 LLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVAR 208 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH S R+ PF+ +N AAI L+ESELFGH +GAFTGA R+G FE+A+GGTLF+D Sbjct: 209 ALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFID 268 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+ Q +LLR L +G+ RVG +PV+V+VRIIAAT+Q+L + + E +FREDLF+ Sbjct: 269 EIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFY 328 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPLRERRED+P LA HFLQ + G E ++L PE A+L WPGNVR+ Sbjct: 329 RLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWPGNVRE 387 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN + G+E+ D+ E + + Sbjct: 388 LENIIEQAAALCTGREIRAADVQIEARAAPAGGAGV------------------------ 423 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L++A + ER +T AL AR LG TL RK+K LG+E Sbjct: 424 -TLADAVEDTERRAITAALARCGNDLGRVARDLGISGTTLWRKMKRLGIE 472 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 183/497 (36%), Positives = 270/497 (54%), Gaps = 32/497 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + VVDD+ ++R L AL+ G ENG LE + S+ PD++++DIRMP M Sbjct: 5 MGR-KILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEM 63 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+A+L+QI+ P LPV+I+T ++ ++ AV A +QGA DY+ KPF ++ +++ + Sbjct: 64 DGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMR 123 Query: 121 HYQ---------EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 E P + + + +IG + ++ S +VL+ GESG Sbjct: 124 QQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESG 183 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKE+ A +H S R PF+ALN AA+P+ L+ESELFGHEKGAFTGA ++G+FE A Sbjct: 184 TGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELA 243 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTL LDEIG++PL +Q +LLRVL + + R+GG PVKVDV ++A T+++L + V++G Sbjct: 244 HGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDG 303 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 FR+DL++RLNVI + LP LRER +DI LA F++ +R K L Sbjct: 304 TFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFLDY 363 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGNVR++EN +++ G E+ + D + A S +P A A Sbjct: 364 DWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVDAA 423 Query: 412 RALRSGHQN----------------------LLSEAQPELERTLLTTALRHTQGHKQEAA 449 S L + E+ER ++ ALR T ++ AA Sbjct: 424 EPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTHAA 483 Query: 450 RLLGWGRNTLTRKLKEL 466 ++LG TL KL E Sbjct: 484 KMLGISVRTLRNKLNEY 500 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 209/466 (44%), Positives = 285/466 (61%), Gaps = 6/466 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 RG V +VDDD ++ VL L AGLT +G E L LASK DV++SD+RMPGMDG Sbjct: 6 RGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPGMDG 65 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L ++ + P +PVI++TAH + AV A + GA D++ KPFD +E + V +A+ Sbjct: 66 LQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLRA 125 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 Q ++ + V+ PT IG + AM DV ++ + + + +VL+ GESGTGKEL A A+H Sbjct: 126 QGEEARQQVR---PTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 SPR PF+ L+ AA+P L+ESELFG+EKGAFTGA T + GR E A GGTLFLDE+G Sbjct: 183 DASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 D+ VQ +LLRV+ + + R+GG VKVDVR +AATHQ LE+RV+EG+FREDLF+RLN Sbjct: 243 DISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLN 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ V +P LRER +DI LA HFL+V A+ G L + AAL WPGNVRQL+N Sbjct: 303 VVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVRQLQN 362 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 L V++ Q + +++ EL S + L A + L Sbjct: 363 FLERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVP---VTDSARTL 419 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+ER + AL+ ++ AARLLG R TL KL+E G+ Sbjct: 420 ESQRKEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 173/472 (36%), Positives = 270/472 (57%), Gaps = 10/472 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + VVDDD+S+R L L G T NG E L+ + +++D+RMPGM Sbjct: 3 MKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGM 62 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ +LK IK+ P PVI++TA+ ++ AV A ++GA D++ KPF +++ +V+ ++ Sbjct: 63 GGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVMA 122 Query: 121 HYQE---QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Y+E ++ ++ +II E + + + +++S SVLI GESGTGKEL Sbjct: 123 TYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELF 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A L+ HS R PF+A+N AAIP +L+ESE+FG EKGAFTGA + G+FE A+GGTL Sbjct: 183 ARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGTLL 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ +M +Q +LLRV+ + + R+GG P+ VDVRIIA T+ ++ + ++E FREDL Sbjct: 243 LDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI + +PPLRER+ D+ L +FL+ + + T L WPGNV Sbjct: 303 YYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN ++ G VL + L E + +V+ + + S + + L G Sbjct: 363 RELENVIERAVLVCGGNVVLPEHLYLE-DQGSVSPAAEEKTSCSLEEVSTDISGIDLSRG 421 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+E+ L+ + L +G+K A+ +LG T+ KL+E M+ Sbjct: 422 M------TIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQEYQMK 467 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 265/469 (56%), Gaps = 13/469 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + V+DD+ +IR + R L TF NG LE + + D++++D++MPG+ G+ Sbjct: 5 KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGM 64 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY- 122 +LK IK+ P LPVI +T +S +D+AV + GA DY+ KPF +E ++ + A+ Sbjct: 65 EVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRV 124 Query: 123 ---QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + ++ +G++ M V+R I +++ + +VLI GESGTGKELVA Sbjct: 125 VDLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVAR 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+HS R PF+A++ ++ ++L+ESELFGH KG+FTGA + G F+ A+GGTLFLD Sbjct: 185 AIHKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+ ++ L Q +LLRVL + + +GG P +++R++AAT+++L + V EG FREDLF Sbjct: 245 EVSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFF 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLN+I + LPPLRER DIP L H ++ A E+G + K + L ++PGNVR+ Sbjct: 305 RLNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVRE 364 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN V+A + DL S P S L+ + Sbjct: 365 LENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSV---------EELKETKR 415 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +L +A ++E+ + AL+ +G+ AA G R +K+LG+ Sbjct: 416 HLREQAVEDIEKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKKLGI 464 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 178/473 (37%), Positives = 267/473 (56%), Gaps = 30/473 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPG 59 M++ + VVDDD ++ + L G NGA+ +E ++ ++L+D MP Sbjct: 1 MKK--ILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPE 58 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 MDG+ LL +IKQ + + VI+MT++ + +AV A + GA DY+ KPF DE V ++E+ + Sbjct: 59 MDGIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKIL 118 Query: 120 SHYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + + + ++ +IIGE+P ++ ++ II +S + ++LI GE+GTGKE Sbjct: 119 QMQRLEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKE 178 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H +S R F+ ++ +++ + L+ESELFGHEKGAFTGA R GRF +AD GT Sbjct: 179 LVAKAIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGT 238 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIG++ L VQ +LLRVL D +F VG +KVDVRIIAAT+ +LE V++G FR Sbjct: 239 IFLDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRS 298 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNVIR+ LPPLRER EDIP LA HFL + ++ + +T LT AWPG Sbjct: 299 DLFYRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPG 358 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+LEN ++ + +D+P L Q Sbjct: 359 NIRELENVIERAVILCKKNRITPEDVP-----------------------LYQEKMGTRP 395 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E + ER ++ L K++ A++L R +L KL + + Sbjct: 396 GLSGKPLQELLEQTERQIIINTLEANDADKEKTAKILKISRASLYNKLNKYKI 448 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 177/469 (37%), Positives = 278/469 (59%), Gaps = 3/469 (0%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDDD +R + L G + +G LEA+ K D+++ D++MPGM G Sbjct: 1 MSSILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS-- 120 L +I++ LPV++MTA+ + A+ A + GAFDY+ KPFDI + L+ +A+ Sbjct: 61 LEAFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAG 120 Query: 121 -HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + IIG +P MQ+V++ IGR++++ +VLI GESGTGKELVA Sbjct: 121 HMMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+++HS RA PF+ +N A+P+ L+ESELFG+EKGAFTGA + R G+ EQA+GGT+FLD Sbjct: 181 AIYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPL +Q ++LR+L + +GG A + VDVRI+AAT++NLE+ ++ FREDL++ Sbjct: 241 EIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V+ V+LPPLR+R D+ LA +F+ + ++E+ ++ L E + WPGNVR+ Sbjct: 301 RLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + + + G V +D+ + A + D + + G Sbjct: 361 LANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAGGDT 420 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L ++ AL+ T+G++ +AA+LLG R TL K+ +L + Sbjct: 421 ARFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDKLNL 469 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 187/465 (40%), Positives = 267/465 (57%), Gaps = 13/465 (2%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + VVDD+ IR + L AG + G L A +K D++ DI +PG+DGL Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLT 74 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L + +R VI++TA ++ AV + GA DYL KPF DE + RA+S Sbjct: 75 MLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAM 134 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 +++ ++ +++G++PAM + + + +++ + I+VL+ GESGTGKELVA ALH Sbjct: 135 RRENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQ 194 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 RA F+ +N A+ L+ESELFGH +GAFTGA ++G F ADGGTLFLDEIG++ Sbjct: 195 GARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGEL 254 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +Q +LLR L DG+ VGG P +VDVR++AAT+++L++ V +G FREDLF+RLNVI Sbjct: 255 PLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVI 314 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +P LRERRED+P LA+HF AAR + P L WPGNVRQLEN Sbjct: 315 TIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAI 374 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 V+AAG + I+D + VA ++ P AD L Sbjct: 375 ERAVVLAAGNTLGIEDFQP---RAGVAGLAAESAPGRRTGGRGDSADDLL---------- 421 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ELER + L G K +A+ +LG R TL +KL++ G+E Sbjct: 422 SLDELERLHILRVLEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 185/472 (39%), Positives = 271/472 (57%), Gaps = 24/472 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + G + +VDD+ R +L+ L G E LE L + D++L+D++M G Sbjct: 6 KSGSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQS 65 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL+++ P VI+MTAH +D+AV A + GAFDYL KP + D V ++RA Sbjct: 66 GLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFER 125 Query: 122 YQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ R +Q P ++G+ P M +VFR++ +++ ++ +VLI GESGTGKELV Sbjct: 126 IGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELV 185 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S R PF+A+N AAIP+ LIESELFGHEKG+FTGA+ G FE A+GGT+F Sbjct: 186 ARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVF 245 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+M + +Q +LLR + + + RVGG + +DVRII+AT++ LEQ ++ G FREDL Sbjct: 246 LDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDL 305 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVIR++LPPLRER D+ LA F++ + G++ + + L +WPGNV Sbjct: 306 YYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGNV 365 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLE+ +MA + DLP E+ STS + L + D Sbjct: 366 RQLESVIERAVLMAESSVIEPGDLPAEI------TSTSLLAGVVPFDLPPEGID------ 413 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LE+ L+ A+ +AA LLG TL +L++ +E Sbjct: 414 --------METLEKNLIIKAMERADWVIGKAAPLLGMSYKTLQYRLEKFAIE 457 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 180/468 (38%), Positives = 268/468 (57%), Gaps = 19/468 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + V DD+ IR ++ L G T NG E ++AL S PDV+L D +MP + G Sbjct: 2 KAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L++IK+ P V+ +TA + AV A ++GA+D++ KPFD D+ + V RA+ H Sbjct: 62 VEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHC 121 Query: 123 QEQQQPRNVQ--LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + + ++++ L T IIGE ++ V + R++ + +VLI+GESGTGKEL+A A Sbjct: 122 RMKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWA 181 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S R PF+A+N AIP L+ESELFGHEKGAFT A + G FE+A+GGTLFLDE Sbjct: 182 IHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDE 241 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++PLD Q +LLRVL + + R+GG + V+VRI+AAT++NLE+ V+ GKFR DL +R Sbjct: 242 IGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYR 301 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV + LPPLRER+EDIP LA FL+ L + + + PE L WPGNVR L Sbjct: 302 LNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDL 361 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + ++ +++ LP + + T+ + + Sbjct: 362 ENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAE-----------------EDT 404 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + E+ + +AL+ ++ A L R TL K+K + Sbjct: 405 SLRDTNSLAEKARILSALQKHNYNRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 179/472 (37%), Positives = 279/472 (59%), Gaps = 20/472 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M++ + ++DD++ I ++R L+G G +G E + +A + D+ L D+ + Sbjct: 1 MEK--ILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSE 58 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +LK +K+ P L VII+T + +++AV + Q GAF Y+ KPF D +V+ A+ Sbjct: 59 DGIEVLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALK 118 Query: 121 HYQEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +++ R ++ N + IIG++ A Q++ + ++R +VLI GESGTGKE+ Sbjct: 119 TQTLKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEV 178 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R + FIA+N A+IP L+ESELFGHEKGAFTGA+ ++G FE+A GT+ Sbjct: 179 VARAIHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTI 238 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG+M + +Q +LLRVL + RVG +++D R+IAAT++NL +R++E FRED Sbjct: 239 FLDEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFRED 298 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV +++PPLRER DI LA +FL +R G + + + PE E + + AWPGN Sbjct: 299 LFYRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGN 358 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N + +M +G +L + LP E+ + P S A L Sbjct: 359 VRELRNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLG--------- 409 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L EA +E++L+ AL+ T + + A L R TL K+++ G+ Sbjct: 410 -----LEEAVSAIEKSLIQQALQKTGWNVLQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 178/472 (37%), Positives = 267/472 (56%), Gaps = 26/472 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + +V+DD + L L+ G + ++G + LE + D+++SD+++PGM Sbjct: 1 MGKYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +LK IKQ + +I+TA+ +D AVSA +QGA DY+ KPFD++E +VE+ + Sbjct: 61 DGMEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLE 120 Query: 121 HYQE----QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + ++ +I+G + +M VF+ I R+ S +VLI GE+GTGKEL Sbjct: 121 KRGLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H +S RA P++ +N AA+ +DL+ SELFGH KGAFTGA ++G FE ADGGTL Sbjct: 181 VARAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGD+ +Q LR L G+ VG + V VRIIAAT++NLE V++G FR+D Sbjct: 241 FLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV+ + LPPLR+R+EDI LA HFL A + + + P L +WPGN Sbjct: 301 LYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN T+ QE+ LP + E L Sbjct: 361 VRELENIIERATLFELTQEITPDSLPQVVIEPC----------------------TVLDP 398 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ + + + R + L T +K +A++LLG R+TL R + L + Sbjct: 399 SPFSMETTSLEAVSRRHIVRILEMTNHNKTQASKLLGIDRSTLWRIMNRLKL 450 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 170/471 (36%), Positives = 261/471 (55%), Gaps = 20/471 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDD+ IR L L+G G T NG ++ L + D++++D++M DG Sbjct: 1 MARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +LK++++ + PVII+TA +D+AV A + GA DY+ KPF ++ V + H Sbjct: 61 YDVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHG 120 Query: 123 QEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ I+G + AM VF I + + + +++I GESGTGK L+A Sbjct: 121 SLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H++SPR PF+A+N AAIP+ L+ESELFG++KGAFTGAN+ + G ADGGTLFL Sbjct: 181 EAVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMP+ +Q+++L+VL G+ +G VD+RII+AT+++LE ++E FREDL+ Sbjct: 241 DEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +P LRERREDIP LA F++ K A+ WPGNVR Sbjct: 301 YRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+N + A G+++ +LP ++ S L Sbjct: 361 ELKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQPLKAMVY------- 413 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E+ ++ AL G K+ A+ LG TL RK+ +LG++ Sbjct: 414 ---------DYEKDIIINALNRFDGSKEMVAKTLGIDLTTLYRKMSKLGID 455 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 176/470 (37%), Positives = 272/470 (57%), Gaps = 23/470 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G+V ++DD+++IR L+ L G T +G + L +A+ D++L D +P +G+ Sbjct: 20 GVVLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGI 79 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +LK+I+ R + VI++TA+ ++ AV+A Q GA +++ KP+D ++ +A V AI+ + Sbjct: 80 EILKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRR 139 Query: 124 EQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +++ ++ +IIG++ M +F ++ +++ S +VL+ GESGTGKEL+A Sbjct: 140 VEEENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAK 199 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R F+ +N ++P DL+ES LFGH KGAFT A ++G FE ADGGTLFLD Sbjct: 200 AIHMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLD 259 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG M ++ Q ++LRVL D +F +GG ++VDVRIIAAT+ +L Q V+EGKFREDLF+ Sbjct: 260 EIGTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFY 319 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI + LPPLR+RR D+P L HF++ E + PE L W GNVR+ Sbjct: 320 RLNVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRE 379 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN V+A G + I LP + + S + +PD+ Sbjct: 380 LENVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDA------------------ 421 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E + ER ++ L ++ EAA +TL +K+K L +E Sbjct: 422 -SLFEIMEDCERRIIVDMLEKVGWNQTEAAEKFRIPLSTLNQKIKRLSIE 470 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 228/473 (48%), Positives = 324/473 (68%), Gaps = 11/473 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ VW++DD+ SIR + AL +F + +E L AL S TPD++++DI+MPGM Sbjct: 1 MKMNNVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL L ++ ++ P LP II+TAH+++D A+SAY+ GAF+YL KPFDI+E L +A Sbjct: 60 SGLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATK 119 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + Q + N + I+G+A +MQ+VF+ IG++S++ I+VLI GESGTGKEL+A + Sbjct: 120 SSKPQHDELTQESN---SQIVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQS 176 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +S R+ PFIA+N+AAIP +L+ESELFGHEKG+FTGA + R GRFEQA GGTLFLDE Sbjct: 177 VHENSSRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLDE 236 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM ++QTRLLRVL+ +FYRVGG P+K DVRIIAAT+QN+E ++ GKFREDL+HR Sbjct: 237 IGDMHPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHR 296 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV R+ LPPLR+R+EDIP L ++FL+ +A E+ + K + L WPGN+RQL Sbjct: 297 LNVFRIELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQL 356 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQ-----MQPDSWATLLAQWADRALR 415 ENTCR++TVMA + + D+P E+ ++ +W L+ L+ Sbjct: 357 ENTCRYITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVLQ 416 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 N L+ +LE+ LL AL+ ++G + +AA++LG GRNT+TRK+K+LG+ Sbjct: 417 D--MNDLTNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKIKDLGL 467 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 177/470 (37%), Positives = 262/470 (55%), Gaps = 17/470 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V +V+D+ L ++ T +G E LE + P ++++D++MP M Sbjct: 22 MSQEKVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPRM 81 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL+++ Q VI++TA +++AV A + GAFDYL KP D ++ Sbjct: 82 DGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNVSR 141 Query: 121 HYQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q++ ++ ++G + M+DVF +I R++ +++SVLI GESGTGKEL Sbjct: 142 QLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKEL 201 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA LH SPR PF+A+N AAIP+ LIESE+FGHEKGAFTGA R G FE A+ GTL Sbjct: 202 VAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTL 261 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIG+MP+ Q +LLRVL D ++ R+G +DVR++AAT++N +Q V +G+ R D Sbjct: 262 LLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGD 321 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV +H+PPLRE +EDIP +A+ + + + + E +A L WPGN Sbjct: 322 LYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPGN 381 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L NT ++ G + Q LP +P A + A+ A++ Sbjct: 382 VRELRNTMERAVILCTGDRLQAQHLPPGF---------GTARPLKTAAVTAEPPANAVQV 432 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + E ER L+ L T +K AA +LG TL KLKE Sbjct: 433 E----VGTTVDEAERLLILKTLESTHNNKTRAAEILGISLKTLHNKLKEY 478 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 199/472 (42%), Positives = 275/472 (58%), Gaps = 14/472 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V ++DD+ I + L+ AL T + L +A + PD ++ D+R+P M G Sbjct: 1 MPKVLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L I++ P LPVI++TAH + A+ A ++GAF+YL KP D+ + ++ RA Sbjct: 61 LDAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMR 120 Query: 123 QEQQQPRN------VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q P + + T I+G+ PAM DV++ IGR++ + VLI GESGTGKEL Sbjct: 121 LAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA AL+ HSPR+ PF+A+N AAIP L+ESELFGHEKGAFTGA+ R G+FEQA GGT+ Sbjct: 181 VARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTV 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDMP Q ++LR+L D +F RVGG V+ DVR+IAAT+++L V++ KFRED Sbjct: 241 FLDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L +RLN V LPPLR+R DI L HF+ A R+L + + A L WPGN Sbjct: 301 LLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L+N R+ V A G+ + LP L + P A L LR Sbjct: 361 VRELQNAMRYAVVQAVGEVITPDCLPASLRGAAA--------PPGDALELTALITSLLRV 412 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 G ++ + ++R LLT L H G++++AA LG R TL KL+ LG+ Sbjct: 413 GATDIYRQVTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 189/469 (40%), Positives = 269/469 (57%), Gaps = 20/469 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + V+DD+ IR L + L G T GAE + S P ++ D++M G+ Sbjct: 1 MTR-RILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGL 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +LK+++Q P V++++ H+ + AV A Q GA+D L KP D D + L+ A + Sbjct: 60 DGLEVLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFT 119 Query: 121 HYQEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + Q ++ ++ +I+G + ++ + I R++ + VLI GE+GTGKELVA Sbjct: 120 NRQLTEENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVAR 179 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+HR S RA+ PFI +N AAIP +LIESELFGH KG+FTGA R G+FEQA GGTLFLD Sbjct: 180 AIHRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLD 239 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDM Q ++LRVL DG R+GG PV+VDVR++AAT+++LE+ + G+FREDL++ Sbjct: 240 EIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYY 299 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +P LRERREDIP L RHFLQ A G+ A+ + E L+ L WPGNVR+ Sbjct: 300 RLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVRE 359 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L NT L ++A+ + + D+ T S D Sbjct: 360 LRNTMERLVILASAASISVADIDRLAGRRTAEPSGIGSLLDC------------------ 401 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 N E + ER L LR + E AR L R+ L +K++ + Sbjct: 402 NTFEEFKQAAERAFLLAKLRAFDWNVSETARALDMPRSNLYKKIERYAL 450 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 176/468 (37%), Positives = 275/468 (58%), Gaps = 28/468 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + V+DD+ +IR L+ AL G T E+G +E D++++D++MP M G Sbjct: 2 KFSILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L+ + P +P+II+T H ++ AV A +GA+D+L KP D++ LV RA+ + Sbjct: 62 ELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNR 121 Query: 123 QEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + Q R + +I+GE+PAM VF ++ + + S SVLI GESG GKEL+A Sbjct: 122 ELIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIA 181 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +A+H SPR P I ++ A+ + ++ESELFGHE+GAFTGA +GRFE A G++FL Sbjct: 182 NAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFL 241 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ + VQ +LLRVL + F RVGG +KVDVR+I+AT++NL + ++ FREDL+ Sbjct: 242 DEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLY 301 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ +H+P LRER+ED+P L FL+ A E G + + P+ ++AL WPGN+R Sbjct: 302 YRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIR 361 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 QL N +M++G + I+DL + ++ E++S P Sbjct: 362 QLRNCIESAVIMSSGPVIHIEDLSEPIR--SLGETSSIRIP------------------- 400 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + + E+ ++ L +G+K + A +LG GR TL KL + Sbjct: 401 ---IGVSMEDAEKEIILQTLEAQKGNKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 177/463 (38%), Positives = 251/463 (54%), Gaps = 18/463 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + + DDD R + L+ G +G + L+ + ++++DI MP + Sbjct: 1 METPKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRV 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +GL +KQ+K P + I +A ++ + + + GAF YL KPF+++E V+R + Sbjct: 61 NGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 121 HYQEQQQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H Q + ++ +IIGE+ M +F +I +++ S +VLI GESGTGKEL Sbjct: 121 HQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R+ F+ALN AAIP +L+ESELFGH KG+FTGA R GRFE AD GTL Sbjct: 181 VARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM ++Q +LLRVL + VG KVDVRIIAAT+QNL+ V +FRED Sbjct: 241 FLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+VI + LPPLRER D+P L FL+ R + + + L+ WPGN Sbjct: 301 LYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN L ++ + I DLP + T + Sbjct: 361 VRELENLVERLVIIKTTGVISIHDLPEKYRGGR--------------TTTVLHGEPMTLP 406 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 L+ A E E L+ AL + G+K+EAA LL R TL Sbjct: 407 DDGFCLNSAVEEFENRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 193/489 (39%), Positives = 273/489 (55%), Gaps = 24/489 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V +VDD+ +I L ++L AG +G L+ ++++ D +L D++MP MDGL Sbjct: 3 ASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L ++ + P LPVI+M+ H +D AV A Q GA D+L KP + + + + H Sbjct: 63 TALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKHQA 122 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + + ++ D++G PAMQ +F +I R + S VLI GE+GTGKEL+A ALH+ Sbjct: 123 AMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALHQ 182 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 HS R PF+ LN AA+P +LIESELFGHEKGAFTGA ++R+G+FE A GTLFLDEIGD Sbjct: 183 HSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIGD 242 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 MP +Q +LLRVL +G+ RVGG KVDVR++AAT++NLE + G+FREDL++R+NV Sbjct: 243 MPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRINV 302 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 +++H PPLRERRED+P L + FL A + G L P+ A ++ +PGNVR+L N Sbjct: 303 VQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRNL 362 Query: 364 CRWLTVMAAGQEVLIQD----LPGELFESTVAE--------------------STSQMQP 399 L ++ G V D LP A S++ Sbjct: 363 VERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPAPA 422 Query: 400 DSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 + A R E + ER ++ L HT + EAARLL R Sbjct: 423 IAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERGHF 482 Query: 460 TRKLKELGM 468 +K+K LG+ Sbjct: 483 YKKMKALGL 491 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 168/474 (35%), Positives = 274/474 (57%), Gaps = 19/474 (4%) Query: 1 MQRGI-VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + ++DD+ + R + G CTT+E+ E LE + PD++++DI+MP Sbjct: 1 MSEDRHIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMPQ 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 DG +L++ K P VI++T ++ +D+AV A ++GA+DYL KPF I++ + +A+ Sbjct: 61 CDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKAL 120 Query: 120 SHYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 H ++ + +Q T +IIG +QDVF IG++S S S+LI GESGTGKE Sbjct: 121 QHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 ++A A+H++S R+ PFI ++ A++P++L+ESELFG+E+GAFTGANT +QG E A GGT Sbjct: 181 VIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDE+G++ +Q +LLR L + RVGG + +D+R++AAT+++LE+ ++ +FRE Sbjct: 241 LFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++R+NVI + LP L ER++DIP L HF + ++++ + PE A+ AWPG Sbjct: 301 DLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L N ++ + V I DLP ++ Q +++ A+ Sbjct: 361 NIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDI----- 415 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E L L G+ +AA+ G R T+ R + + ++ Sbjct: 416 ---------CLKRFEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINKYDLQ 460 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 182/463 (39%), Positives = 253/463 (54%), Gaps = 20/463 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + DDD R + L+ G +G + LE + ++++DI MP + Sbjct: 1 MDSARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRV 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +GL +K++K P + I +A ++ + + + GAF YL KPF+++E V+R + Sbjct: 61 NGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 121 HYQEQQQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H Q+Q ++ +IIGE+ M +F +I +++ S +VLI GESGTGKEL Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S RA F+ +N AAIP DL+ESELFGH KG+FTGA R GRFE AD GTL Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM ++Q +LLRVL + + VG KVDVRIIAAT+QNLE V FRED Sbjct: 241 FLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+VI + LPPLRER+ DIP L +FL+ R + + T L WPGN Sbjct: 301 LYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN L ++ + QDLP + A + +R Sbjct: 361 VRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKS----------------ERLTLP 404 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 L+ A + E L+ AL T G+K+EAA LL R TL Sbjct: 405 DTGFCLNSAVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 177/467 (37%), Positives = 273/467 (58%), Gaps = 13/467 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V +VDD+ R L++AL + + + E + ++ DV+++D+RMPG GL Sbjct: 3 PSVLIVDDEKHTREGLQQALVDS-YDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGL 61 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 ++ + + V++MTA+ +++ AV A ++GA D+L KP +I+ L++RA+ Sbjct: 62 KVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKAKT 121 Query: 124 EQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + IIG +P + +V + ++ S ++LI GESGTGKEL+A Sbjct: 122 LEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIAQ 181 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+ S R++ PF+A++ AA+ ++L+ESELFGHE+G+FTGA R GRFE ADGGTLFLD Sbjct: 182 AIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFLD 241 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ Q +LLR L RVGG P+ +DVR++AAT++ LEQ V++GKFREDLF Sbjct: 242 EIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFF 301 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+R+ +PPLRER ED+P L H++ + E GV + P A L WPGN+R+ Sbjct: 302 RLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNIRE 361 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N C V+ G+ + DL ++T+A +T A + G Sbjct: 362 LRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAP--------TPGAPGSTVLGGA 413 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 S + E E+ LL AL ++G++ +AA L+G R TL RK+ + Sbjct: 414 VPTSFSVEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQW 460 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 176/467 (37%), Positives = 265/467 (56%), Gaps = 3/467 (0%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + V DD++ IR L G + + E L PD+ L D+ + DG Sbjct: 1 MTHILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L+ L++I + V++M+ H +D AV A + GA DY+ KPF +D + + A+ Sbjct: 61 LSYLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLR 120 Query: 123 QEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 +++ R ++ +++G++PA++ + ++ R++ + VLI GE+GTGKELVA +L Sbjct: 121 GLERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSL 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R PF+ +N AAIP+ LIESELFGHEKGAFTGA + R G+FEQA GG LFLDEI Sbjct: 181 HEGSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEI 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L Q R+LRVL + Q R+GG + VDVR++AAT+++L + +FREDLF+RL Sbjct: 241 GDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRL 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLRER DIP L HF+++ R+ G KL E AL WPGNVR+L+ Sbjct: 301 NVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGNVRELK 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN- 420 NT L ++A G + ++DL + +T + + + SG + Sbjct: 361 NTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPD 420 Query: 421 -LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L EA+ ER + L +G+ AA+ LG R +L R++++ Sbjct: 421 LPLREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQW 467 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 197/513 (38%), Positives = 279/513 (54%), Gaps = 48/513 (9%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPGMDG 62 ++ V+DDD+ +R+ L R L+ +G E + + PDV+ D+RM GM G Sbjct: 7 PVILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVRMGGMSG 66 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+ I+ +P VI+MTA A+ A + GAFDY+ KPFD + +AL E A+ + Sbjct: 67 LEALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAENALKAH 126 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + ++ I+G +P MQDVF+I+G+++ S ++V+I GESGTGKELVA Sbjct: 127 HDMRAAGEYKPTINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGTGKELVA 186 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ++ +HS RA FIA+N AAIP +LIESELFGHEKG+FTGA R G+FE D GT+FL Sbjct: 187 RSIWKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRIGKFELCDRGTIFL 246 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM L QT++LRVL G+ RVGG +KVDVRIIAAT+++LE V+ FREDL+ Sbjct: 247 DEIGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKTFREDLY 306 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+R+ +PPLRER DIP++ LQ ++ + PE L R WPGNVR Sbjct: 307 YRLNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGKVSPEAMNILARHDWPGNVR 366 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+A G +L +DLP E+ ++ +T+ L Sbjct: 367 ELENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLATAVSTTTPSPPPPPNIERSMLNVQR 426 Query: 419 QNLLSEA-------------------------------------------QPELERTLLT 435 EA LER ++ Sbjct: 427 SVFDGEAASPATIAAPSPPPPPSTTATPTLESALDFLHHELTITADIEPILKRLEREMIA 486 Query: 436 TALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 R T G+ ++A LLG R TL ++L+EL + Sbjct: 487 RVYRATDGNIAKSADLLGITRPTLKKRLEELAL 519 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 181/476 (38%), Positives = 271/476 (56%), Gaps = 12/476 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +V+D+ +R +L+ L T N AE L + D+++ DIR+P Sbjct: 1 MSFEKILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG L+Q+ V+++T + +++AV + GAFDY+ KPF + ++++A + Sbjct: 61 DGQKFLEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQT 120 Query: 121 HYQEQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + Q + R + + + ++G +PAM + +II R++ + +VLI GESGTGKE+VA Sbjct: 121 YRQLLRVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +R SPR FI +N AAI ++LIESE FGHE+GAFTGA R+GRFE A GTL L Sbjct: 181 REFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ ++P ++Q +LLRVL + +F RVGG +KV+VRIIA ++++L + V++G+FR+DL+ Sbjct: 241 DEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV VH+P LRER EDI LA HFL+ AR+ GV+ AAL WPGNVR Sbjct: 301 YRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVR 360 Query: 359 QLENTCRWLTVMAA-GQEVLIQD-------LPGELFESTVAESTSQMQPDSWATLLAQWA 410 +L+NT +++ G+ V LPGEL P + A Sbjct: 361 ELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGA 420 Query: 411 DRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + H +L ELE+ + ALR T G++ +AA LG TL KL+E Sbjct: 421 SPTVTDSHGQVLK--LDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEY 474 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 166/465 (35%), Positives = 258/465 (55%), Gaps = 7/465 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + +VDDD ++R + + G++ +G E E + D+++SD+RMP +D Sbjct: 4 TSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPNVD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ ++ I+ P+ +TA ++ AV A + GA+DY+ KPF + LV R + Sbjct: 64 GMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVLE- 122 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + I + M +F + ++ S +VLI GESGTGKE+ A + Sbjct: 123 ----IEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYI 178 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R+ F+A+N AA+P++L+ESELFG+EKGAFTGA + G+FE ADGGT+ LDE+ Sbjct: 179 HENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDEL 238 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++PL +Q +LLRVL + + R+GG P K++VRI+A T++ L++ V EG FREDL++RL Sbjct: 239 GEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRL 298 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLRER+EDI LA F + A+ G + + + AL WPGNVR+LE Sbjct: 299 NVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELE 358 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 +T V+ + ++L L T+ + + Q + A Sbjct: 359 HTIERAVVLCRDGVISERNL--FLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGID 416 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + E+ER L+ L+ T G++ +AA +LG TL KL E Sbjct: 417 FAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEY 461 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 167/470 (35%), Positives = 255/470 (54%), Gaps = 23/470 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M G + +V+DD S+R V+ L G ++ E L + ++++D+ +PGM Sbjct: 1 MSSGRILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL LLK+++ +P VI+MTA + AV A + GA+D+L KP E LV R + Sbjct: 61 SGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLE 120 Query: 121 HYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H++ ++ + I+G + + + R++ + ++LI GE+GTGKEL Sbjct: 121 HHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R PFI +N AIPK+L+ESELFGH KG+FTGA T ++G+ E ADGGT+ Sbjct: 181 VAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGGTV 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIG+MPL++Q R+LR++ + + +VG +P KVDVRI+AATH+ L V+ G FRED Sbjct: 241 LLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL V+ ++LPPLRER DI L +HFL+ + ++ + T +WPGN Sbjct: 301 LYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQLEN L ++A + DLP L + + Sbjct: 361 VRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGIN---------- 410 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +LE+ L+ AL+ G++ AA+ L R +L++ Sbjct: 411 ---------LEDLEKDLILQALKKYAGNQTRAAQYLNMSRRAFAYRLEKY 451 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 180/474 (37%), Positives = 269/474 (56%), Gaps = 23/474 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPG 59 M +++ DD+ I +++ L GL TF +G +L L D+LL D++MP Sbjct: 6 MSETRIFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPD 65 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 MDGL +L+++K+ P LPV+IMTA +DAAV A + GA+DY+ KPF ++ + ++E + Sbjct: 66 MDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLENVL 125 Query: 120 SHYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 +++ + ++ T I+ + ++V+ + ++ S ++LI GESGTGKE Sbjct: 126 ERELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTGKE 185 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A A+HRHS R +++N AA+ L+ES+LFGH +GAFTGA T ++G E+AD GT Sbjct: 186 LIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADSGT 245 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LF+DEIGDM L +Q +LLRV+ +G F VG KVD+R +AAT++NLE+ V EG+FRE Sbjct: 246 LFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRFRE 305 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNVI + LPPLRER+EDI LARHFL+ + + E E + +WPG Sbjct: 306 DLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSWPG 365 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+LEN ++A V LP +T S L++ Sbjct: 366 NIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVS-------- 417 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER + L T HK A +LG R TL RK+ E G++ Sbjct: 418 ----------LENVEREHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGLK 461 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 272/482 (56%), Gaps = 34/482 (7%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + +VDD+ L RAL T NG E ++ D++L+D++MPGM Sbjct: 1 MNKKKILIVDDEIHTCQGLARALKYE-WETFTASNGKEAIKIFEDNPVDIILTDVKMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ LL+Q+K P P I+M+A+++ + V A + GA+D++ KPF +D+ +++ A+ Sbjct: 60 NGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQ 119 Query: 121 H--------------YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLI 166 Q + + + + II ++ AM++V R + +++ + SVLI Sbjct: 120 ASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSVLI 179 Query: 167 NGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQG 226 GE+GTGKE++A A+H S R+K FIA++ AA+ +L ESELFGHEKG+FTGAN R G Sbjct: 180 TGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKRIG 239 Query: 227 RFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQ 286 RFE ADGGTLFLDEIG++ Q +LLR+L F RVGG + D R+IAAT+++L + Sbjct: 240 RFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDLRK 299 Query: 287 RVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 VQ G+FREDL++RL+VI + LPPLR+RREDIP L +H+L + E + K + A Sbjct: 300 MVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADAMA 359 Query: 347 ALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLL 406 L WPGNVR+L N + V++ + + + +LP + S + D L Sbjct: 360 RLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKAL- 418 Query: 407 AQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 E E+ L+ AL+ + ++ AA LG R TL R+LK+ Sbjct: 419 ------------------DVAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQF 460 Query: 467 GM 468 G+ Sbjct: 461 GI 462 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 199/471 (42%), Positives = 278/471 (59%), Gaps = 16/471 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + V DD+ SIR +L L G G +G + L+ LA++ DVLL D+RMP DGL Sbjct: 6 TILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLV 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L++ HP L ++M+A+ + A+ A GAFDY+ KPF DE V ++ +A + Sbjct: 66 VLREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERL 125 Query: 125 QQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ R ++ P I+GE+PA+ + R + RL+ +VLI+GESGTGKEL+A Sbjct: 126 VRENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARE 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH SPRA F+A+N AIP LIESELFGH KGAFT A T ++G F +ADGGTLFLDE Sbjct: 186 LHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G++PL Q +LLRVL +G+ VG KV+VR++AAT ++L + V +G FREDL++R Sbjct: 246 VGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK--LLHPETEAALTRLAWPGNVR 358 LNV+ + +PPLRERRED+P LAR F+ REL E L E EA L AWPGNVR Sbjct: 306 LNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVR 365 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN ++A +L +LP L+ ++ + D L+ G Sbjct: 366 ELENAMERAVLLADEPHILPANLPERLWAASPPGPHGE----------KPHGDPVLQGGG 415 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A ELE + + ALR T+G++ AA LL L K+KE G++ Sbjct: 416 DLSLKRAIRELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGID 466 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 179/459 (38%), Positives = 279/459 (60%), Gaps = 12/459 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ + + +R L + + ++G E L+ L ++ DV++ DIRM GL Sbjct: 23 ILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLET 82 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+I++ P V+IMTA+ A+ A + GA+DY+ KPF++ E +++ +A+ + Sbjct: 83 LKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASKLT 142 Query: 126 QQPRNVQL-----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ + + + IIG++ MQ V+++IG+++ ++ +VLI GESG+GKELVA A Sbjct: 143 KEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVARA 202 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 ++++S RA PFIA+N AAIP++L+ESELFGHE+G+FTGA R G+FEQ DGGT+FLDE Sbjct: 203 IYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLDE 262 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG+MP+ Q ++LRVL +G+F R+G P+K DVRIIAAT+++L V + +FR DLF+R Sbjct: 263 IGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFYR 322 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+++ LPPLRER EDIP L HFL R L + + +L WPGN+R+L Sbjct: 323 LNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIREL 382 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + V+A + LP E+ AE + S A D ++ + Sbjct: 383 ENVIQRAMVLATSATIQNCHLPEEI---QAAEKKKYFKEKSGKGGPAGGLDFLVQEIVGS 439 Query: 421 LLSEAQPELERTLL----TTALRHTQGHKQEAARLLGWG 455 L + + E ++LL T L +G + +A R+LG+ Sbjct: 440 DLRDHRLETLKSLLHRIYTQVLEECEGDESKAKRILGFH 478 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 167/470 (35%), Positives = 269/470 (57%), Gaps = 16/470 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VVDD+ S+R +L+ L+ G E+G + L L D++L D+R+ M G Sbjct: 5 KANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLGDMSG 64 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +LK K+ + VI+++A++ + AV+A +GA+D++PKP D E + R++S Sbjct: 65 IDVLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRSLSLR 124 Query: 123 QEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +Q+ + + + I+G P M+ ++ ++ +++++ +LI GESGTGKEL+A Sbjct: 125 TVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIA 184 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S RA PF+ +N IP++L+ESELFGH KG+FTGA ++G F A GT+FL Sbjct: 185 RAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFL 244 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ + +Q +LLRV+ DG F +VGG + VD RI++AT++NL Q V +G FREDLF Sbjct: 245 DEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLF 304 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI +++PPLRER+ DI LA+ F++ +++LG E L L + ++PGNVR Sbjct: 305 YRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFPGNVR 364 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN ++ +L + L + + E + D Sbjct: 365 ELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFD------------LEEVTK 412 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E ++ER L AL + G+K AA LLG + +L +L + Sbjct: 413 GVALDEILADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDKLNV 462 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 170/473 (35%), Positives = 270/473 (57%), Gaps = 6/473 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDD+ +RW L + G +NG+ L ++PD++L D+R+P M Sbjct: 1 MPSEKILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL +LKQ+K+ VI++TA L+ A + GA+D++ KP D DE V+ A+ Sbjct: 61 GGLEILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNALE 120 Query: 121 HYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGTGKE 175 + + + V+ DI+G + M ++ + +++ S + +L+ GESGTGK+ Sbjct: 121 TTRLRTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKD 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H S R + PF+A+N +AIP+ L+E+ELFGHEKGAFT A +++G FE ADGGT Sbjct: 181 LVAKAIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ +Q +LLRVL D RVGG ++VDVR+IAA++++LE+ V++G FR+ Sbjct: 241 LFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQ 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RL +I V LPPLR+R+EDI L F++ R+ + + T L + WPG Sbjct: 301 DLYYRLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L+N ++ + + LP + + + + A + R+L Sbjct: 361 NVRELKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPP-APIQQLPNGRSLP 419 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+ER + A++ G++ AARLL R+ L KLK+ G+ Sbjct: 420 RLVIPEGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 185/476 (38%), Positives = 263/476 (55%), Gaps = 27/476 (5%) Query: 1 MQR----GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIR 56 M R + +++D+ R L AL + + + L ++ D++L+DIR Sbjct: 1 MNRENDFPKLLIIEDEKRTRMGLVMALGEE-FDTYEASDLSSAMAILENEPIDIVLADIR 59 Query: 57 MPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE 116 + G +L+++K + MTA+ ++ AV A + GA+DY+PKP D+++ ++ Sbjct: 60 LGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLK 119 Query: 117 RAISHYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGT 172 R + + + ++ IIG + AM+ VF I +++ S +VL+ GESGT Sbjct: 120 RIYQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGT 179 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD 232 GKELVAHA+H+ SPR PF+ ++ AA+ L+ESELFGHEKGAFTGA R GRFE+A Sbjct: 180 GKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAA 239 Query: 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 GTLFLDEIG++ L Q +LLR L + RVG V VDVR+IAAT++NLE+ V+EGK Sbjct: 240 RGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGK 299 Query: 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 FREDLF RLNV+R+ +PPLRER+EDIP LA+ FL A E G + L PE L Sbjct: 300 FREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYD 359 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADR 412 WPGNVR+L+ V+ G+E+ +DLP + S S Sbjct: 360 WPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFN----- 414 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E E+ L+ ALR QG K AA+ LG R TL RK+K+ + Sbjct: 415 -------------LKEAEKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFEL 457 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 184/476 (38%), Positives = 276/476 (57%), Gaps = 29/476 (6%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + DD ++R + AL+ G GAE + A K DV+++D+RM +DG Sbjct: 28 MARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVPVDG 87 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +++++++ P V++++AH + AV A ++GA D++ KPF D A VE++I Sbjct: 88 IEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEIA 147 Query: 123 QEQQQPRNVQL----------NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGT 172 +E++ R + ++G + M+ V + +++ + +VL+ GESGT Sbjct: 148 RERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGT 207 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD 232 GKELVA A+H SPR + PF++++ AAIP+ L+ESELFGHEKGAFTGA + GRFE A+ Sbjct: 208 GKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELAN 267 Query: 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 GGTLFLDE+G++P VQ +LLRVL + QF RVGG V+VDVR+++AT++NL Q V+ G+ Sbjct: 268 GGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGR 327 Query: 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 FREDL++RLNV+ + LPPLR+R D+ LAR F+ A + L PE L R Sbjct: 328 FREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRHR 387 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADR 412 WPGNVR+LEN V A G+ V +DLP + ++ A S D Sbjct: 388 WPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPVPSGD------------ 435 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L++ +LER L+ A +G K E ARLLG + L KL++ G+ Sbjct: 436 -------RSLTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 172/470 (36%), Positives = 261/470 (55%), Gaps = 25/470 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ R +L L+ G T + E + + P+++L+D+++ +G Sbjct: 1 MTTLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L + + VI++TA + +AV+A +QGAFDYL KP D + + + +A Sbjct: 61 IEILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERM 120 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 ++ ++ IIG++ M V I+ + + ++ +VLI GESGTGKEL+A Sbjct: 121 NLIKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H +SPR PFIA+N AAIP LIESELFG+E GAFTGANT + G E AD GTLFL Sbjct: 181 RAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEI ++PL Q++LLRVL D + ++G KVDVRIIAAT++NL ++V++ KFREDL+ Sbjct: 241 DEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL VI V +PPLRER+EDIP L F++ ++E G + + AL +WPGN+R Sbjct: 301 YRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LE+ ++ ++ D+ EL T PD Sbjct: 361 ELESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINY------------- 407 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELE+ L+ AL + +AARLLG +T +LK+ G+ Sbjct: 408 --------EELEKELIKKALIKSNFVIAKAARLLGMSYDTFWYRLKKFGL 449 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 181/469 (38%), Positives = 263/469 (56%), Gaps = 24/469 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V +VDD+ + +L+ L G + AE E L + DV+++D+ M GM GL Sbjct: 3 GRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L ++I Q P LPVI++TA LD A SA + GA+D++ KPF++D VERA+ H Sbjct: 63 DLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHRA 122 Query: 124 EQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +++ R V I+ +P M+ VF ++ R++ S S+LI GESGTGKELVA Sbjct: 123 LREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+ S R++ F+A+N AA+P L+ESELFGH +GAFT A R G F +A GGTLFLD Sbjct: 183 AVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++P+ +Q +LLR L + VG + VDVR+IAAT+++LE ++E +FREDL++ Sbjct: 243 EIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R+NV+ V LPPLR R D+ LA+HFL+ A + L L AWPGNVR+ Sbjct: 303 RINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N +A + + DLP ++ + + Sbjct: 363 LQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVP-------------- 408 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER + L G+K +AA++LG+ R TL RKL+ GM Sbjct: 409 ------MEEVERRYILRVLEVVGGNKSQAAQILGFDRATLYRKLERYGM 451 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 611 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 190/471 (40%), Positives = 267/471 (56%), Gaps = 10/471 (2%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 RG + VVDD ++R L T G E L LAS + D+LL+D++M MD Sbjct: 9 TRGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMD 68 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL++ + P L VI+MTA +++AV A + GA+DY+ KPF E VERA+ Sbjct: 69 GLTLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALER 128 Query: 122 YQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q+ N+ + ++G + AM+++ + R+++S +VLI GESGTGKELV Sbjct: 129 ARLQRDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKELV 188 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH HS R F+ +N AAI + L+ESELFGH KGAFTGA R+G FE+ADGGTLF Sbjct: 189 ARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGTLF 248 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 +DE+ + Q++LLR L +G+ RVG ++VDVRI+AAT++++E V++ +FR+DL Sbjct: 249 IDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQDL 308 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ + +PPLRER ED+P LA HFL+ A K L + L +PGNV Sbjct: 309 YYRLNVVALRVPPLRERLEDVPALAEHFLERANAR-SPNPKRLSAAAVSHLMSYGFPGNV 367 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +A G E+L +D P T A T S A L Q + Sbjct: 368 RELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGT-----PSVAFLDGQGGALGRNAS 422 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L++ E ER +T AL A LG TL RK+K L + Sbjct: 423 AGPTLAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKRLNL 473 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 187/468 (39%), Positives = 269/468 (57%), Gaps = 20/468 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL-ASKTPDVLLSDIRMPGM 60 ++ + + DDD IR +L G E+G EVL + D+L+ D+RMPG Sbjct: 6 EQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQ 65 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +L+Q+++ PVI+MTAH A+ A Q GA+DY+ KPFD++E +V+R Sbjct: 66 DGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFD 125 Query: 121 HYQEQQQPRNVQLNG--PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 H Q + R ++ P +IG +PAMQ++++ IGR++ + +VLI GE+GTGKE++A Sbjct: 126 HQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLA 185 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 + +H +S R P + +N AA+P+ L+ESELFGHEKGAFTGA R+GRFE A G++FL Sbjct: 186 NLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFL 245 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG+M L Q +LLR+L + +F RVGG V+VDVR+IAAT+++LE V+ G FREDL+ Sbjct: 246 DEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLY 305 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI +HLP LR+R DIP LA FL + E L WPGNVR Sbjct: 306 YRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPGNVR 365 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 QLE+ +++ G + + + S V S S +Q D A R Sbjct: 366 QLEHEIERAVILSRGNVITSEHM------SLVPSSRSALQ-----------VDIAARLRE 408 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 ++ L E ++ER L AL + AAR LG ++ K+ Sbjct: 409 KSTLEELLADVERLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 176/471 (37%), Positives = 282/471 (59%), Gaps = 17/471 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGA-GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 G + +VDD+ + +L R L+ T+ ++ +V E L D++++D+RMPG DG Sbjct: 3 GKILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRDG 62 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +++ +KQ++P VIIMTA+ +++A+ A ++GAFDY+ KPF + + +V++A+ Sbjct: 63 LGVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKWQ 122 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q Q++ ++ +IG + AM+ + I R++++S +VLI GESGTGKELVA Sbjct: 123 QLQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELVA 182 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 LH+HS R FI LN + +P+ +IESELFGH +G+FTGA ++G E+A+ GTLFL Sbjct: 183 RELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTLFL 242 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ + +Q +LLR+L +G++ +G +VD+R IAAT+QNL ++++ G+FREDLF Sbjct: 243 DEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFREDLF 302 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +PPLRER +DIP L FL+ K + P T AL + WPGNVR Sbjct: 303 YRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGNVR 362 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LENT +MA+G + +D+ E+ +E+ + D ++ + D+ Sbjct: 363 ELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDK------ 416 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E + ++ AL G+ +AAR G R L R ++E ++ Sbjct: 417 ------LIEEFQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRETNVD 461 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 189/471 (40%), Positives = 281/471 (59%), Gaps = 22/471 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+ IRW + L G + E+G + LE +A+ PDV+L D+R+PG+DG+ Sbjct: 6 ARILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLPGIDGV 65 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L++ HP + V++M+AHS +D AV A + GA D+L KPF + VERA+++ + Sbjct: 66 QTLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERALANVR 125 Query: 124 EQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGTGKELVA 178 ++Q + + ++G + AM+ V +I RL+ S + VLI GESG+GKE+VA Sbjct: 126 TRRQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSGKEVVA 185 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S RA P + +N AA+P+ L+ESELFGHE+GAFT A+ ++G FE A+GG++ L Sbjct: 186 RAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEGGSVML 245 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+P Q +LLR+L + F RVGG ++ DVR+IAAT+ NLE+RV EG+FR DLF Sbjct: 246 DEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRFRADLF 305 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+R+ +PPLRE +D+P L HF+ +E+ + K + P L WPGNVR Sbjct: 306 FRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHWPGNVR 365 Query: 359 QLENTCRWLTVMAAG-QEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 +L N ++ AG E+ + LP EL ++ + L+ Q L Sbjct: 366 ELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEK------LVPQVTGEGL--- 416 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ER L+ A+ G++ +AARLLG R+TL +LK+ GM Sbjct: 417 -------VLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 174/476 (36%), Positives = 272/476 (57%), Gaps = 11/476 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DDD I +L+ AG + L+ + S P+V + DI +P G+ Sbjct: 3 AKLLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKSGI 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS--- 120 +LK+ K+ P L VI+ T + A+ A + GAFDY+ KPFD+ + V++A+ Sbjct: 63 EVLKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALECNL 122 Query: 121 ---HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ V+ + +IG +P M ++++++G ++ S +VLI GESGTGKEL+ Sbjct: 123 LSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKELL 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A++ +S R PF+A+N AA+P+ L+ESELFGHEKGAFT A++ R G+FEQ +GGT+F Sbjct: 183 ARAVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGTIF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+M Q + LRVL + +F RVGG +KVDVR+IAAT+++L V+E FR DL Sbjct: 243 LDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRMDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RL V+ LPPLR+R EDIP L F++ +++ G K + PET A LT W GN+ Sbjct: 303 YYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEGNI 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGEL-----FESTVAESTSQMQPDSWATLLAQWADR 412 R+L+N TV G ++ D L F+ E+ + + ++L D Sbjct: 363 RELKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVFDG 422 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + LE+ L+ A+ + ++ AA+LLG RNTL +L+ + Sbjct: 423 ICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERYRI 478 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 190/469 (40%), Positives = 267/469 (56%), Gaps = 15/469 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VVDD+ ++ LE L G + ++ + LA + DV L DI+MP + GL Sbjct: 11 RVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLSGLE 70 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVA-LVERAISHYQ 123 LL +K R P + VI+MT H+ ++ A++A + GA+DYL KPF+ E VA V +A Sbjct: 71 LLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAERKM 130 Query: 124 EQQQPRNVQLN------GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + R ++ G ++G + +++V R+I ++ S+ +VL+ GESGTGKELV Sbjct: 131 LFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKELV 190 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH SPR PF+ALN A+ + L+ESELFGH KGAFTGA ++G F+ ADGGT+F Sbjct: 191 ARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGTIF 250 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGD+P Q RLLRVL +G+ RVG V+VDVR+IAATH++L + V+ GKFREDL Sbjct: 251 LDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFREDL 310 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI + LP LR+R +D+P LA HFL+ A LG + L P+ L WPGNV Sbjct: 311 FYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWPGNV 370 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V+ G+ V DLP + T + P L Sbjct: 371 RELENAIERAVVLCRGEAVTGGDLPPAV--------TGRTAPLVREAPAGGDEAVWLTMS 422 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + ++ E+ + T +RH + AAR G R+ R L++ Sbjct: 423 YATAKEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKY 471 >UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteobacteria RepID=B6BW54_9PROT Length = 465 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 226/467 (48%), Positives = 311/467 (66%), Gaps = 9/467 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + +W++DDD SIRWVL++AL T F N E + PD+++SDI+MPG Sbjct: 4 SKKKIWILDDDKSIRWVLQKALEKNNYTVLAFGNTNEAINQFNHDMPDLIVSDIKMPGES 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL L+++K + P +PVIIMTA SDLD+AV +Y GA++YLPKPFDID A+ ++ A Sbjct: 64 GLQFLEKVKGKFPNIPVIIMTAFSDLDSAVDSYSHGAYEYLPKPFDIDNAINVINSAFK- 122 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + T IIG + AMQ+VF+ IG+LS+S S+LI GESGTGKELVA A+ Sbjct: 123 ----DEADELNDIDSTNKIIGTSKAMQEVFKQIGKLSKSDASILITGESGTGKELVAKAI 178 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R PF+ALN AAIPKDL+ESELFG+EKGAFTGAN+ ++G FE+A GTLFLDEI Sbjct: 179 HDNSLRKDKPFVALNSAAIPKDLLESELFGYEKGAFTGANSSKKGYFEEAQDGTLFLDEI 238 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 DMP+D+Q++LLRVL DG F ++G + +K +V+IIAATHQ+L+ ++ FREDLFHRL Sbjct: 239 ADMPIDLQSKLLRVLNDGSFQKLGSSSVIKANVKIIAATHQDLQDKINNQTFREDLFHRL 298 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLRER DI LA+ FL +A++L K L+ ET+ +L W GN+RQL Sbjct: 299 NVITIQLPPLRERENDITLLAKFFLNQSAQDLNTSIKYLNEETQDYFKKLNWTGNIRQLR 358 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N C WLTVM+ G+E+ + DLP EL + + S +W L + + N+ Sbjct: 359 NICHWLTVMSPGKEIGVSDLPTELLKENIYNKPSF----NWEDNLELVIQNDILNNETNI 414 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +LE L+ +AL+H G + +AA +LG GRNT+TRK+K++ + Sbjct: 415 YDTYIEKLESILIKSALKHCSGKRIKAAHILGIGRNTITRKIKDINI 461 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 177/472 (37%), Positives = 268/472 (56%), Gaps = 18/472 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 Q + +V+D+ R +L+ AL +G T N EA+ D+ L D+R+P + Sbjct: 3 QSAFILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L+++ + P + +IIMT ++++D AV A + GA D+L KPFDIDE + ++ I Sbjct: 63 GIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKT 122 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q + +N++ T +IG+ PA+Q + + L+ S +VLI GESG GKE++ Sbjct: 123 RQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVL 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH+ R+ P +++N AIP++L+ESELFGH KGAFTGA R GRFE A+GGT+F Sbjct: 183 AKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM +Q +LLRVL + F VG + VDVR+IAATH++LE + G+FREDL Sbjct: 243 LDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI + LPPLRER +DI L HF+ ++ + + E + + WPGNV Sbjct: 303 YYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N +T + + ++DLP + S + Q + + Sbjct: 363 RELQNLIERVTTLKRHGIMELEDLPSRMI--------------SDKERVLQSFRMDVENA 408 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E L+ +AL+ Q +K +AA L R TL K+K+ G++ Sbjct: 409 ECIDLKSTVDEFESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGLQ 460 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 182/471 (38%), Positives = 268/471 (56%), Gaps = 23/471 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALAS--KTPDVLLSDIRMPGMDG 62 V VVDD+ +R VL A G +EA+ + ++L+D+ MP G Sbjct: 14 RVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSG 73 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L K R VI+MTAHS +++A+ A + GA+D++ KPF E AL +A+ Sbjct: 74 IEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKS 133 Query: 123 QEQQQPRNVQLNGPTTDI-----IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + ++ D+ +G + AMQ + +I +++ + +VL+ GESGTGKE V Sbjct: 134 SIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERV 193 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S RA PF+ +N A+P+ L+ESELFGHEKG+FTGA G F +ADGGTL Sbjct: 194 ARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREADGGTLL 253 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++P +Q +LLRVL + + VG A + VDVR++AAT++++E V++G+FR+DL Sbjct: 254 LDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDL 313 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVIR+ LPPLRER DI RLA FL+ A ELG + + L + AL ++PGNV Sbjct: 314 YYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYSFPGNV 373 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +A G + + DLP + + S A LLAQ Sbjct: 374 RELENMMERAVALAGGPTIGLGDLPSAVAGLSA----------SPAPLLAQLPPEGCA-- 421 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E E+ER L+ AL T G ++ AA+LLG +L +L + + Sbjct: 422 ----LDEVIGEVERRLILQALERTGGVRKAAAKLLGVSFRSLRYRLAKHAL 468 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 165/473 (34%), Positives = 253/473 (53%), Gaps = 25/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +VDDD + + L + T + E + + + D++LSDIR+ Sbjct: 1 MKNSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG +L ++ P VI++T + +D A+ A + GAFD L KP +E + +ERA+S Sbjct: 61 DGFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALS 120 Query: 121 HYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + ++ ++ L +I+G MQ VF ++ R++ + +VLI GESGTGK L Sbjct: 121 QRKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+HR R F+ + A+P+ L+ESELFGH G+FTGA + G+F QAD GT+ Sbjct: 181 LARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG +Q +LLRVL + +F VG +VD R+I AT++ LEQ V G+FR+D Sbjct: 241 FLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R+NVI + +PPLRER DIP LA HFLQ E G ++ + A+ R WPGN Sbjct: 301 LYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L+N ++ G +V ++DL + + ++ Sbjct: 361 VRELQNVVERAVLLGRGPKVQVEDLTPAIASGQIV---------------------SIDP 399 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L EA ER ++ L Q ++ A LG R TL +K+K LG++ Sbjct: 400 VGNKALKEALESPERAIILDVLEMHQWNRNATADALGINRTTLYKKMKRLGLD 452 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 264/470 (56%), Gaps = 25/470 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + V++DD +R +L L +G + +G E L+ + +V+L D+RMPGMD Sbjct: 8 KEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMPGMD 67 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ +L+Q++ + VI+ T H ++ AV + GA+DYL KP +DE ++++A Sbjct: 68 GVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKANEK 127 Query: 122 YQEQQQPRNVQL---NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + N++L I+G++ +Q V + R + VLI GESG GKEL A Sbjct: 128 NRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKELFA 187 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S RA PF+ +N + + ESELFGH +GAFTGAN R G FE AD GTLF+ Sbjct: 188 RAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGTLFM 247 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEI +MPLDVQ +LLR+L G F R+GG + VDVR + A+++ LE V G+FREDLF Sbjct: 248 DEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFREDLF 307 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 HR+N++ +++PPLRER EDI L+ +FL+ A E G + E AAL +WPGNVR Sbjct: 308 HRINLLPINIPPLRERPEDIIPLSYYFLKSAN-ESGSANWEISEEAMAALCAYSWPGNVR 366 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L NT R +++A Q + LP ++ + + +G Sbjct: 367 ELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAV---------------------TGL 405 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++L +ER + L +G+K +AA++L R TL KL+ G+ Sbjct: 406 PDVLPLPLWVVERDYIQKVLEKLEGNKSKAAKVLEIDRKTLYTKLERYGL 455 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 261/473 (55%), Gaps = 29/473 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M V +VDD+ + L AL G F + LEA+ + DV+ SD+R+P M Sbjct: 1 MLLLRVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL +IK P V+I+T + + A+ A ++GAF Y+ KP + E A+ RA Sbjct: 61 DGLELLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQE 120 Query: 121 HYQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + ++ + + I+G +PA+QD+F ++ +++ +VLI GESGTGK L Sbjct: 121 KIGMRMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKAL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA ALH SPR PF+ N ++LI SELFG+EKGAFTGA+ + G E A GGT+ Sbjct: 181 VALALHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTV 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE+G+MPL +Q RLL VL + + RVGG PV +D+R+IAAT+++L+ V++G FRED Sbjct: 241 FLDEVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF RLNV+ LP L +RREDIP L RHF+ + + + AAL ++PGN Sbjct: 301 LFFRLNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + GQ + + DLP ++ A P Sbjct: 361 VRELENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLP----------------- 403 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+ER + L T +K+ AA++LG R TL RKLKE G+E Sbjct: 404 --------TLAEVERRYVIRILEKTGYNKRLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 187/466 (40%), Positives = 273/466 (58%), Gaps = 20/466 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ +R G + T EN + + L S + DV+L D+R+PG+ GL Sbjct: 15 LLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGLEA 74 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+QIKQR P VI++T ++ + +AV A + GAFDY+ KPF++DE L++R H + Sbjct: 75 LRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLKLT 134 Query: 126 QQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R V+ ++G AP M+ ++RII + + S+ VLI GESGTGKE+VA A+ Sbjct: 135 TENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARAV 194 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H PFI ++ ++ LIESELFG+ KGAFTGA +QG ADGGT+FLDEI Sbjct: 195 HYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDEI 254 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P+D+Q++LLR L + + VGG V ++VRI+AAT+++LEQ VQ+G FR DL+ RL Sbjct: 255 GELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFRL 314 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLR+R++DIP L HFL+ R G + + + E + WPGNVR+LE Sbjct: 315 NVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQ-RNISDEALKLMLTYDWPGNVRELE 373 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 + + +G + DLP + V T+LA A A +G + Sbjct: 374 HCLDRACALTSGPTINTLDLPTTIQNWHVQ----------TQTVLAPQAPAAPTNGIVPI 423 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+E+ + A+ G K EAARLLG G+ TL RKLKE G Sbjct: 424 -----AEMEKQAILEAIERLHGDKLEAARLLGIGKTTLYRKLKEYG 464 >UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verrucomicrobia RepID=B5JMF6_9BACT Length = 518 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 265/507 (52%), Gaps = 41/507 (8%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + ++DD+ IR LE L + + +E E L+ D+L D+ +P Sbjct: 1 MSLERILILDDELVIRKALEEQLRRKRFSVCSVGTLSEADEHLSKDEYDLLFVDVHLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G LL+++ V+I+T + +++AV Q GAFDY+ KPF + L+++A Sbjct: 61 NGTELLERVSSMQNPPLVVIITGYGTVESAVKCMQAGAFDYIIKPFSSSQIDVLIKKARD 120 Query: 121 HYQEQQQPRNVQLNGPTT-DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + Q + + + + ++IG++ + + +I +++ + +VLI GE+GTGKELVA+ Sbjct: 121 YRQLVRVNQFLASESTVSGELIGKSGFINQLKDVIRKVAPTEATVLICGENGTGKELVAN 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 L+R S R APFI +N AAI + LIESE FGHEKGA+TGA R+GRFE ADGGT+ LD Sbjct: 181 ELYRCSARKSAPFIRVNCAAISESLIESEFFGHEKGAYTGATQRREGRFELADGGTILLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI ++ VQ +LLRVL + +F RVGG +KVDVR+IA T++NL Q V+ G FR+DL++ Sbjct: 241 EISEISPKVQAKLLRVLQEREFERVGGNKTIKVDVRVIATTNRNLAQSVERGMFRQDLYY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV + +PPLR+R D+ LA++F Q R+ G + K PE AL R WPGNVR+ Sbjct: 301 RLNVFPIQVPPLRDRDGDVVLLAKNFAQSFGRKHGKQIKGFAPEAVEALERHPWPGNVRE 360 Query: 360 LENTCRWLTVMAA-GQEVLIQDL--------------------------------PGELF 386 L+NT ++A GQ + L P + Sbjct: 361 LQNTVERAVILAESGQPIAQGHLGLFAMPTNVMAPPAGHPYPPVEAAGAAYGGGYPPQSA 420 Query: 387 ESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA-------QPELERTLLTTALR 439 V + P ++Q A + + E+E+ + L Sbjct: 421 PPPVNGGFYEAPPAMPPQPVSQSVPAASQPSSASGSETTTVAPPLPLEEIEKKHILATLE 480 Query: 440 HTQGHKQEAARLLGWGRNTLTRKLKEL 466 T G++ +AA+LLG TL K+ Sbjct: 481 TTDGNRTQAAKLLGISIRTLRNKISAY 507 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 183/465 (39%), Positives = 276/465 (59%), Gaps = 29/465 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ +V V DD+ SIR +++ L+ L T +G E L+ ++ D L DIRMP +D Sbjct: 17 EKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPKVD 76 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GLA+L+Q+ +PVI++TA+ D + A ++GA+D++ KPFDID+ V +A+ + Sbjct: 77 GLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKALDY 134 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + ++ ++G + AMQ+V+++IGR++ + ++VLI GESGTGKELV+ A+ Sbjct: 135 SKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAI 194 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +SPR K PF+ +N AAIP+DL+ESELFG+EKGAFTGA+ + G+FE A+ GT+ LDEI Sbjct: 195 HYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEI 254 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM +Q ++LRVL + R+GG + VDVR++AAT+++L+ V+ G FREDL+ RL Sbjct: 255 GDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRL 314 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+++ LPPLRER+EDIP LA HF++ A E E + PE AAL +PGNVR+LE Sbjct: 315 NVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRELE 374 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + +G+ + + LP ++ E A Sbjct: 375 NIIARAVALCSGKVLTLDVLPPQVVEPKPALRP--------------------------- 407 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L E E ER A+ Q A LL + ++LKE Sbjct: 408 LKEVLLEAERRAFRQAVAVAGLDPQAVADLLQVDLDYAKKRLKEW 452 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 160/470 (34%), Positives = 263/470 (55%), Gaps = 6/470 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + V+DD+ +I E+ L + NG + +E + + D++++D++M M G Sbjct: 5 KAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMNSMGG 64 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L ++K P V+++T ++ + +AV + GAFDYLPKPF DE V +A++ Sbjct: 65 LEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQALAPE 124 Query: 123 QE----QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + + T ++G++P MQ V R++ + + + +VLI GESGTGKE++A Sbjct: 125 ELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGKEVIA 184 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H +S R F A++ A+ ++L++SELFGH KGAFTGA ++G FE ADGGT+FL Sbjct: 185 RAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGGTVFL 244 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ + + +Q+ LLR L + VGG APVKVDVR++ AT+Q+L++ V +GK RED + Sbjct: 245 DEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLREDFY 304 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +R+ V + PPLRERR DI +A HFL + + + + + P+ L +WPGNVR Sbjct: 305 YRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWPGNVR 364 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 QL N ++ G+ + ++L E + E Q L+ Sbjct: 365 QLRNAIERAVILCEGRTITAREL--EHLQDKPGEEHHQAAYTITHDYQVPANAEELKEAK 422 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + A ++ER LT AL + G+ AA G R+ + +K+ G+ Sbjct: 423 KIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNFSNLMKKHGV 472 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 188/469 (40%), Positives = 271/469 (57%), Gaps = 17/469 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDD+ +IR L L G E+ + LE L S+ D+ + DIR+PGMD Sbjct: 26 TKASILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMD 85 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL + ++ LPVI+++ H+D V A ++GA D+ KP D D + V A+S Sbjct: 86 GLTLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSR 145 Query: 122 YQEQQQPRNVQLNGP--TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + + D++GE+PAM+ + IG+++ +S VL+ GESGTGKELVA Sbjct: 146 RDLEGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAA 205 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +HR S RA PF+ +N AAIP +LIESELFGHEKG+F+GA R+G+FE A GGTLFLD Sbjct: 206 EVHRQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTLFLD 265 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDM L Q ++LR L G+ RVG VDVRIIAAT+++LE+ V+ G FREDLF Sbjct: 266 EIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFREDLFF 325 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPLR+R +D+P LA F Q+A RE G+ K + P L + WPGNVR+ Sbjct: 326 RLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGNVRE 385 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N C + +M+ G+ + D+P + L + Sbjct: 386 LRNVCERMVIMS-GERITAADVPETVGPRAAPPPPPGSAD--------------LSRYGE 430 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E + +ER + + L + +AA+ LG R L +K+K+ G+ Sbjct: 431 VPLKELRDLVERDYILSRLEEHDWNITQAAQALGVERTNLHKKIKQHGL 479 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 167/472 (35%), Positives = 272/472 (57%), Gaps = 18/472 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDD+ + R+ +++ L + NG +VL+ + + P ++ DI MP + Sbjct: 7 MHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQL 66 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL L++I++ V+I+TAH AV A ++GA+DY+ KP++++E + A+ Sbjct: 67 DGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRNALE 126 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q++ +++ +++G++ MQ+VF I ++ + ++VL+ GESG+GKEL Sbjct: 127 KIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKEL 186 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 AH +HR S R PFI +N AA+P+ LIESELFGHE+G+FTGA R G+FE A+ GT+ Sbjct: 187 AAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGTI 246 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIGDM L Q++LLRVL + +F R+GG + VDVRII+ATH++LE+ ++EG+FRED Sbjct: 247 LLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFRED 306 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R+NV+ + +PPLR+R+EDIP L F+Q +++ + + L+ WPGN Sbjct: 307 LYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWPGN 366 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +RQL+NT V+ + I DL ++ + PDS + + R + Sbjct: 367 IRQLKNTIESAIVLTNNDVLDISDLSEDIIR-------EEKTPDSTKNVHYHLSFREAK- 418 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ ++ L G+ A L R L +K+K+L + Sbjct: 419 ------KILIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIKDLQL 464 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 184/455 (40%), Positives = 260/455 (57%), Gaps = 18/455 (3%) Query: 17 WVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPML 76 + + L G ++ E L A T DV++ DI+MP + G+ LL+ IK P + Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDV 79 Query: 77 PVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVERAISHYQEQQQPRNVQL-- 133 VI+MTA + ++ AV A + GA+DYL KPF +IDE V +A + + R ++ Sbjct: 80 EVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEAL 139 Query: 134 --NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAP 191 D+IG++ M+ VF+++ +S S+ +VLI GESGTGKELVA A+H S R P Sbjct: 140 TVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKP 199 Query: 192 FIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTR 251 F+A+N +A+ + L+ESELFGH KG+FTGA ++G FE ADGGT+FLDEIGD+P Q R Sbjct: 200 FVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVR 259 Query: 252 LLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPL 311 LLRVL +G+ RVG PVKVDVR+IAATH +L + ++GKFREDLF+RLNVI + LPPL Sbjct: 260 LLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPL 319 Query: 312 RERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 R+R ED+P LA HFL++ A + + + P ALT W GNVR+LEN V+ Sbjct: 320 RDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLT 379 Query: 372 AGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELER 431 + + ++DLP + +ST ++ + A ER Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAK-------------RLAMRAFER 426 Query: 432 TLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L+ L + AAR G R+ R LK+ Sbjct: 427 RYLSALLEKNNQNVSSAARAAGVDRSNFRRLLKQY 461 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 265/469 (56%), Gaps = 33/469 (7%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VV+D+ R +L L G G + E E L + V+L D+ +P +G+ Sbjct: 2 RVLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGME 61 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LLK I++ + V+++T H + AV A + GA+D+L KP + E +++A+ Sbjct: 62 LLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRGI 121 Query: 125 QQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ + +L+ + E+ AM++V + R++ S VLI GESG GKE++A Sbjct: 122 KRENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIASI 181 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +HR+S RA P +ALN+A+IPK+LIE+ELFG+EKGAFTGA++ ++G FE ADG TLFLDE Sbjct: 182 IHRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLDE 241 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG+M + +Q +LLR + +FYR+GG ++ +VRII AT+++L + V+ G+FREDL++R Sbjct: 242 IGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYYR 301 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ +++PPLRERREDI LA HFL + R+ K E +LT W GNVR+L Sbjct: 302 LNVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVREL 361 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 +N + + G + +D+ +S Sbjct: 362 KNIVERAVLFSDGDRIDSEDISCLFTHQESKKS--------------------------- 394 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++ER +T L+ +K++A+ +LG TL RKL+ G+E Sbjct: 395 --FKTIKDVEREYITEILKQVNFNKRKASEILGIPLRTLYRKLESYGIE 441 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 192/467 (41%), Positives = 290/467 (62%), Gaps = 4/467 (0%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + +++DD+ L R L G T + G L + DV++SD+++PG+DG Sbjct: 4 KRTLLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLPGLDG 63 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+K++ Q P LP+I+MTAH + A+ A + GA+DYL KPF+++E + LVE+A+ Sbjct: 64 LELVKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKAVESS 123 Query: 123 QEQQQPRNV-QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + +P + + IIG + MQ +++ IGR++ I+VLI GE+GTGKEL+A A+ Sbjct: 124 RLMSEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELIARAI 183 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 ++HS R+ APF+A+N AAIP+ L+ESELFGHE+GAFTGA+ R GRFEQA GGTLFLDEI Sbjct: 184 YQHSDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLFLDEI 243 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L+ Q +LLRVL + +R+GG P+ +D R+IAATH++LE+ + + +FREDL++RL Sbjct: 244 GDMSLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDLYYRL 303 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV + P LR R EDIP L R+ +Q+ + +E+ + PE L WPGNVR+LE Sbjct: 304 NVAVIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNVRELE 363 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N R + ++A + I+ + + + A + S A + + RA R + + Sbjct: 364 NVVRQVLLLAGRYTISIEHVREVVAKVGEAVAGGN---QSIAAGIGTYLSRARRGEMEGV 420 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+ER L A+ QG++ +AAR LG R T+ KL G+ Sbjct: 421 HATVIEEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLNHFGL 467 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 606 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 283/475 (59%), Gaps = 11/475 (2%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + VVDDD I ++ L T A+ LE PD +L DI++P GLA Sbjct: 6 TLLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQSGLA 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+ + ++ +PVI+MT H + A++A GAF+Y+ KPF+ D + L++ A+ + Sbjct: 66 LIHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALETSRM 125 Query: 125 QQQPRNVQLNG----------PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++P + + I+G PAM DVFR IGR++ +VLI GE+GTGK Sbjct: 126 ARRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILGETGTGK 185 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E+VA A+++HS R F A+N AAIP+ L+ESELFGHE+G+FTGA+ R G+FE +GG Sbjct: 186 EVVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKFEICNGG 245 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIGDM +QT+LLRVL + +F RVGG P+K DVRI+AAT+++LE + +G FR Sbjct: 246 TLFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAMADGSFR 305 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 DLF+RLN + LPPLRER ED+ R+A HF + A +LG + + PET L +WP Sbjct: 306 SDLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRLMAHSWP 365 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L+ + + A+G ++ LP ES+ + ++ + W + +++ +R L Sbjct: 366 GNVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSPGNNVEIS-NGWESEVSKEINRRL 424 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 SG + + E++R L+ ++ T + EA+ LG R TL ++K L ++ Sbjct: 425 ASGSCTVSEDIHNEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRMKHLRLK 479 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 162/465 (34%), Positives = 267/465 (57%), Gaps = 19/465 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ +I+ +++ L G T + + + + DV+ D+ +P +GL L Sbjct: 4 ILVVDDEKNIQDLMKDILTDEGYYVGTTGSITTAKDFIKKNSYDVIFLDVWLPDGEGLDL 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L IK+ P V++++ H+++ AV A ++GAFD+L KP + +A +E+ + + Sbjct: 64 LPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKVEKQIKVK 123 Query: 126 QQPRNVQLNGPTT-DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 Q + +IIG +P + ++ R I ++++++ V+I GE+GTGKELVA ++H Sbjct: 124 QSLEYFKEKEEKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSIHYQ 183 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 SPR PF+ +N AAIP +L E+E FG+EKGAFT A T + G+ E AD GTLFLDE+ DM Sbjct: 184 SPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEVADM 243 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 L Q +LLRVL + QF R+G + VD+R+I+AT++++++ V++G FR+DL RL+VI Sbjct: 244 SLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRLSVI 303 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 +++PPLRER EDI LA +FL+ + E VE +L E + WPGNVR+L+N Sbjct: 304 PIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPGNVRELKNLM 363 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 L ++ + + +DLP + + E + L + Sbjct: 364 ERLVILNSESIIYNKDLPPHMLGNVKLEKEESIPITI------------------RPLKD 405 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A+ ELE+ ++ AL+ + +E A+ L ++L RK+K+ +E Sbjct: 406 AKEELEKQMIKKALKVYNNNLKEIAKALDIDLSSLYRKIKQYNLE 450 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 274/470 (58%), Gaps = 20/470 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDD+ +R LE L G ++ +N E + + S+ D++++D+R+P M Sbjct: 1 MSN-KILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ LLK+IK +P + V+IMTA+ L++AV+A ++GA+DY+ KPF DE + ++RA+ Sbjct: 60 NGMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQ 119 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H + ++ +I+G + AM+ + + +S ++LI GESGTGKE Sbjct: 120 HKNTTAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGKEK 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H HS R PFI ++ AA+ ++++ESELFGHEKG+FTGA R+GRFE A+GG++ Sbjct: 180 IAGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGGSI 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLD++ D+PLD+Q +LLRV+ + F RVGG + ++VRII AT ++L ++G+FRED Sbjct: 240 FLDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV+ + +PPLRER++DIPRL +FL+ + ET L WPGN Sbjct: 300 LFYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + + I LP L + + M L + Sbjct: 360 VRELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMD---------------LSN 404 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L + E+E+ L+ A + T G++ + A +LG R TL KL L Sbjct: 405 TQTIQLHDVLTEVEKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVRL 454 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 220/496 (44%), Positives = 304/496 (61%), Gaps = 31/496 (6%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + V DDD ++R+VLE+AL+ AG F N ++ D++++D+ MPG GL Sbjct: 8 TILVADDDQAVRFVLEQALSRAGYKVHAFGNTQPLVNHFNQYGGDLIITDVVMPGGSGLD 67 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +++ +K +P LP+I+MTA S L AV A+++GAF+YL KPFDI+ V L RA+ +E Sbjct: 68 MVQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRRALQKQEE 127 Query: 125 Q--------------QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGES 170 + + + QL IIG + AMQ +F IGRLS S ++VLI+GES Sbjct: 128 RVRNQPQTKTKQQAAAEDMDRQLEERFGGIIGSSRAMQALFHTIGRLSNSEMTVLIHGES 187 Query: 171 GTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ 230 GTGKELVA A+H +SPR + PF A+NMAAIP+DLIESELFGHEKGAFTGA + R G F++ Sbjct: 188 GTGKELVARAVHAYSPRRRGPFTAINMAAIPRDLIESELFGHEKGAFTGAVSRRPGHFQK 247 Query: 231 ADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQE 290 A+GGTLFLDEIGDMP++ QTRLLRVL +G F VG ++ DVRIIAATHQ+L + E Sbjct: 248 AEGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATHQDLPTAISE 307 Query: 291 GKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 G+FREDLF+RLNVI +H+P LR R+EDIP L+++FL ++EL V K L L Sbjct: 308 GRFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTSKELKVATKRLTQSAMEKLVA 367 Query: 351 LAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELF-------------ESTVAESTSQM 397 WPGNVR+LEN R LTV+ E+ + + E ST Sbjct: 368 YDWPGNVRELENLIRRLTVLIPEDEIRPEKIELYERTMPKLARNDLSGHEPQEERSTESN 427 Query: 398 QPDSWATLLAQWADRALRS----GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLG 453 S+ +L Q D + + ++E L+ LR T+G++ +AA++LG Sbjct: 428 TSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRVKAAQILG 487 Query: 454 WGRNTLTRKLKELGME 469 RNTL +K+++LGM+ Sbjct: 488 INRNTLRKKMRDLGMD 503 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 177/474 (37%), Positives = 266/474 (56%), Gaps = 21/474 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG- 59 M R + VVDD+ R VL AL G T +G E L + +++ D+++PG Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGS 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DGL LL++ K+ + ++IMTA+ +D AV A ++GAF+Y+ KPF IDE + +ER I Sbjct: 61 IDGLELLQRAKEMN-NASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMI 119 Query: 120 SHYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + ++ ++ IIG + +Q V +I R++ SS +VLI GESGTGKE Sbjct: 120 EQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGKE 179 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H + R F+ +N A + + L+ESELFGH +GAFTGA ++G FE+ADGGT Sbjct: 180 LVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGGT 239 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LF+DEIGD+P VQ ++LRVL +G+F +G VDVRIIAAT+Q+L ++V++ +FRE Sbjct: 240 LFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFRE 299 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNVI + +PPLRER+EDIP L +HF++ ++ + K L PETE L + WPG Sbjct: 300 DLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + + + + + + D L Sbjct: 360 NVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNN---------------MLLDDLLS 404 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ +A + + G+ AAR R L R LK+ ++ Sbjct: 405 HPYKEARKKALDVFNTKYVMNIINKNSGNVTNAARECKIERQYLQRMLKKYAIK 458 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 180/469 (38%), Positives = 263/469 (56%), Gaps = 24/469 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R +VDD+ IR +LE L L + N E E LA + D+ L+D+R+P Sbjct: 1 MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL L++ I+QRHP PV ++TA+ LD A+ A + GAFD+L KP D+ LV A+ Sbjct: 61 SGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALR 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + V ++GE+P M+ + IG+L+RS V I+GESG+GKELVA Sbjct: 121 LRNPEAEEAPVD-----NRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARL 175 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H PR + PF+ +N AIP +L+ESE FGH+KG+FTGA +QG F+ A GGTLFLDE Sbjct: 176 IHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDE 235 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 + D+P+ +Q +LLR + + VGG V VDVRI+ ATH++L V G+FR+DL++R Sbjct: 236 VADLPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYR 295 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI + +PPLRERREDIP LA L+ A + G+ A L + + L +PGNVR+L Sbjct: 296 LNVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVREL 355 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + ++ DL A + A + Sbjct: 356 ENMLERAYTLCEDDQIQPHDL-------------------RLADAPGASQEGAASLSEID 396 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + ++ER L+ AL T+ ++ AA+ LG ++ +LK+LG++ Sbjct: 397 NLEDYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID 445 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 172/475 (36%), Positives = 269/475 (56%), Gaps = 12/475 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DDD I +L+ G + L+ + ++ P+V + DI MPG G Sbjct: 3 AKLLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMPGKSGF 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L++ K+ P L +I+ T H A+ A + GA+DY+ KPFD ++ + V++A+ Sbjct: 63 QVLQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQKALECNL 122 Query: 124 EQQQP------RNVQLNGPTTDI-IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 ++ ++L DI IG + M ++++++G+++ S +VLI GESGTGKEL Sbjct: 123 LNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESGTGKEL 182 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A++ +S R PF+A+N AA+P+ L+ESELFGHEKGAFT A+ R G+FEQ +GGT+ Sbjct: 183 LARAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQCNGGTI 242 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG+M L Q +LLRVL +F RVGG ++VDVRIIAAT+++L V+E FR D Sbjct: 243 FLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEKTFRMD 302 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RL V+ LPPL++R EDIP L F++ +R+ G + + PET L + W GN Sbjct: 303 LFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKHPWEGN 362 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGEL-----FESTVAESTSQMQPDSWATLLAQWAD 411 +R+L+N TV ++ +DL L F+ + + + +L D Sbjct: 363 IRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKMLEPVFD 422 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + LE+ L+ A+ + ++ AA+LLG RNTL +L+ Sbjct: 423 GICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERY 477 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 174/471 (36%), Positives = 269/471 (57%), Gaps = 26/471 (5%) Query: 7 WVVDDDSSIRWV----LERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 +VDD++ +R L+ + T G E L+ + + D++L D++MP M+G Sbjct: 8 LIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMDVKMPEMNG 67 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L IK+ P V++MTAHS+L AV A ++GA+DY+ KP + +V +++ Sbjct: 68 LEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVRKSLEAR 127 Query: 123 QE---QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 V + ++I+G + M++VF +I RL + +VL+ GE+GTGKELVA Sbjct: 128 DLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVAR 187 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +SPR F+A+N AIP++L+ESELFGHEKGAFTGA + G+F+ A+ GTLFLD Sbjct: 188 AIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLFLD 247 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ D+Q +LLRVL + +F VG VK RIIAAT++NLE+ ++EG+FREDLF+ Sbjct: 248 EIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDLFY 307 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + LPPLRER +DI LA +F++ +++ G + + PE L WPGN+R+ Sbjct: 308 RLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWPGNIRE 367 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN ++ ++ + LP DS AD+ G+ Sbjct: 368 LENIIERSFIVENSHQITVDSLP-----------------DSIKLTPKDGADKTASVGYS 410 Query: 420 NLL--SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + E+E+ + +AL+ G + +NTL RK+++ G+ Sbjct: 411 GPLDFDAFKEEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRKYGI 461 >UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=122 Tax=Alphaproteobacteria RepID=NTRC_AZOC5 Length = 480 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 209/475 (44%), Positives = 300/475 (63%), Gaps = 7/475 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M G + V DDD++IR VL +AL+ AG + N A + ++ D++++D+ MP Sbjct: 1 MPTGSILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDE 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 + LL +IK+ P LPVI+M+A + A+ A ++GA++YLPKPFD+ E +++V RA++ Sbjct: 61 NAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALA 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ ++ ++G + AMQ+++R++ RL ++ ++V+I GESGTGKELVA A Sbjct: 121 EPKKAEKLALGSDEQENIPLVGRSAAMQEIYRLLARLMQTDLTVMIAGESGTGKELVARA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH + R PF+A+NMAAIP+DLIESELFGHEKG+FTGA T GRFEQA+GGTLFLDE Sbjct: 181 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNAGRFEQAEGGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMP++ QTRLLRVL G++ VGG P+K DVRIIAAT+++L +Q+G FREDLF R Sbjct: 241 IGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFREDLFFR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + LPPLRER ED+P L RHF A RE G+ AK + L R WPGNVR+L Sbjct: 301 LNVVPLRLPPLRERSEDVPDLVRHFFLQAERE-GLPAKQVDSAALDRLKRYRWPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG--- 417 EN R L + + + + EL E + + D+ + SG Sbjct: 360 ENLVRRLAALYPQEIITPSIIEAELSEPAPSALSEDGPVDATLGASVERHLNGYFSGFGE 419 Query: 418 ---HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L ++E LL+ AL T+G++ +AA LLG RNTL +K+++L ++ Sbjct: 420 DLPPPGLYHRILRDVEYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIRDLDIQ 474 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 171/473 (36%), Positives = 264/473 (55%), Gaps = 20/473 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALA-GAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + + +VDD+ + +L+R+L G +G E L L + D+LL D++MP Sbjct: 1 MTKETLLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPE 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 M+GL LL+Q++ +P L V++MTAH ++ AV A + GA+D++ KPFD + V + +A+ Sbjct: 61 MNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKAL 120 Query: 120 SHYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + ++ N+Q + +++G++ MQ V+ I ++++ ++VLI GESGTGK+ Sbjct: 121 ERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTGKD 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A+H S R PF+A+N AIP++++ESELFG+ KGAFT A R G F++A GT Sbjct: 181 LACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHKGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGD+ ++Q +LLRVL + +G V VDVR++A+T+++L R++ G+FRE Sbjct: 241 IFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + +P LRER EDIP L H ++ L K + PE R WPG Sbjct: 301 DLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + A E+L +D+ F V S + ALR Sbjct: 361 NVRELENVIVRGLLFAPRDEILPEDV---GFHRPVKGRIPGKDAPSTNVPYKDAKEEALR 417 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 H L T+G+ AA+L G R L + L+ G+ Sbjct: 418 GFHAEYFGG------------VLTATRGNVSHAAKLCGLERQALQQLLRRYGI 458 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 183/462 (39%), Positives = 262/462 (56%), Gaps = 20/462 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V V+DDD ++ + +L G +CT G + L + DV+L+D++M + GL + Sbjct: 10 VLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMADLHGLEV 69 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY-QE 124 +++ KQ P V ++T +D+ AV A ++GA YL KP D+ E A++E + Sbjct: 70 VERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENSAKRVGTL 129 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 ++ R + ++G +P MQ V +++ + SS SVLI GE+GTGK+L A ALH + Sbjct: 130 RELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARALHTN 189 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 PR PF A+N A + + L++SE+FGHEKGAFTGA+ R GRFE A GGTLFLDEIGDM Sbjct: 190 GPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGTLFLDEIGDM 249 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +Q +LLR L +G+ RVG P+KVDVRIIAAT+++L++ V+ G+FR+DL+ RL V Sbjct: 250 PLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQDLYFRLKVG 309 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 V LPPLRE REDIP+L HFL+ AR + P + WPGNVR+L N Sbjct: 310 TVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPGNVRELRNLL 369 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 + V+ E+ D P + + PD L+ Sbjct: 370 ASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPD-------------------QLVGR 410 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 E+ER + AL T G+++EAARLL TL RK++E Sbjct: 411 PLDEVERYYIEKALDLTGGNREEAARLLNISERTLYRKIQEW 452 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 174/464 (37%), Positives = 272/464 (58%), Gaps = 27/464 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + ++DD+ SI V++ L+ AG T ++ E L + + D+++SD + GL Sbjct: 3 KILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLE 62 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L+ +++ + P +I+TA+ ++ AV A ++GA Y+PKP DID + + I Y + Sbjct: 63 ILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLI----KIIDFYIK 118 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 +Q+ +V+ IIG++ M+D+F+ I +S+S S+LI GESGTGKELVA A+HR Sbjct: 119 KQENFDVEE--EFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRR 176 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 S RA PFI +N +AIP +L E+ELFGHEKG+FTGA+ G+ E A GTLFLDEIG+M Sbjct: 177 SKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEM 236 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +Q +LLRVL + +F+RVGG +K+ R+I+AT++NLE+ V+ +FREDLF+R+NVI Sbjct: 237 PLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVI 296 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +PPLRER+EDIP L + F+ ++ + + L WPGNVRQLEN Sbjct: 297 HLKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENII 356 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 V+ G+ + LP + ++ Q +RS + +L Sbjct: 357 ERAVVLCQGEIITANHLPDRIKSNS------------------QKISENIRSENNSL--- 395 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++E+ ++ L+ ++ AA+ LG R L K+K G+ Sbjct: 396 NLYDIEKNIILKVLQEENFNQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 174/467 (37%), Positives = 279/467 (59%), Gaps = 12/467 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + ++DD+ +IR L+ AL G T + E L+ +A P + D+R+P +G Sbjct: 2 RKKIVIIDDEETIRLSLKEALMDLGYEAETAGDSWEGLKRIALFKPQAVFLDMRLPDGNG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+++IK+ L V++MTA+ D+ AV+A + GAFDY+ KPF++DE ++ R Sbjct: 62 LQLIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTRIFDKL 121 Query: 123 QEQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKELVAH 179 + Q++ ++ + D IIG +M+DVF + LS + ++VLI GE+GTGKE+VA Sbjct: 122 KLQKKIYLLEKEKLSNDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTGKEVVAS 181 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +SPR +A + +N AIP L+ESELFG+EK AFTGA ++G E ADGGT+FLD Sbjct: 182 AIHHNSPRKEASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEIADGGTVFLD 241 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ +D+QT+LLR L + +F RVGG ++V++R+IAAT+++LE+ +++ +FREDL++ Sbjct: 242 EIGELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEKKEFREDLYY 301 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + LPPLR+R EDI LA+H+L ++ + E + L + W GN+R+ Sbjct: 302 RLNVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLKYHWKGNIRE 361 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N ++ + ++ LP E+ S + +QP Sbjct: 362 LKNVLERTIILNDDSYIRLEHLPIEIVGSEEKTVATNIQP---------MIKIGEDIPKD 412 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L E+E++ + TALR +G+ +AA +LG R L RK ++ Sbjct: 413 FSLENYLQEIEKSYIQTALRLCKGNHSKAAYILGISRFALKRKQEKY 459 >UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=B8DNW7_DESVM Length = 528 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 188/523 (35%), Positives = 272/523 (52%), Gaps = 57/523 (10%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + V+DD+ R ++ + +G + +G E LE LA +V+L D+RMPGMDG Sbjct: 1 MKRLLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHLAQDRVNVVLLDMRMPGMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +I++ +P LPV+++TA + +AV A ++GAFDYL KP D +E A++E+A Sbjct: 61 QETLARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDFG 120 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + ++ N++ PT I+G + AM V I + S ++LI GESGTGKEL+A Sbjct: 121 RLLEENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 LH S RA P + +N AA+P L+ESELFG+ KGAFTGA + GRF+ A GGTLFL Sbjct: 181 QGLHDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++PL++Q++LLR L + +G PV VDVRIIAAT+++L++ V+ G+FREDLF Sbjct: 241 DEIGELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+ V PPLR+R ED+P LA L+ R+ + + PE AL R +WPGNVR Sbjct: 301 FRLNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP------------------- 399 +LEN +++ + LP ++ Sbjct: 361 ELENVLERALILSRSDTLGPDSLPSQVLADRADRWERGGPDGGQYRGQDRVGDRQRPYSS 420 Query: 400 ----------------DSWATLLAQWADRALRSGHQNLLSE------------------A 425 + Q A A+ G + E + Sbjct: 421 DRPDMSDRAGMVDRAFERQGRPWGQDAASAIPRGDASWSGEGDGFMPGGYGGAPGAYPGS 480 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + ER L AL GH++ A LG R TL KLK+ G+ Sbjct: 481 LDDAERDALLRALEVHGGHRERTADALGISRRTLQYKLKKFGL 523 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 253/470 (53%), Gaps = 28/470 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V +VDD++SI L L G T G + +E L PD++L+D+RMP + G+ Sbjct: 10 PRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMPDVSGV 69 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L +Q P +PVI+MTA + L +AV A +GAF Y+ KPF DE VA++ RA H + Sbjct: 70 QVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRAAEHRK 129 Query: 124 EQQQPRNV------QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + + + + IG + + +V R+ ++ + +VLI GESGTGKE+V Sbjct: 130 LRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESGTGKEVV 189 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H S R F+++N A+P+ L+ESELFGH KG+FTGA + G F A+ GT F Sbjct: 190 ARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAAANHGTFF 249 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+ Q +LLR L + VG V VD R++AAT+++LE+ ++ G FR DL Sbjct: 250 LDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKRGGFRADL 309 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI VHLPPLR+R +DIP LA FL +A E K+L+ AL WPGNV Sbjct: 310 FYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDALMAYGWPGNV 369 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN ++ +G + LP + S+ P S Sbjct: 370 RELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSP--------------- 414 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 +ER + L++ G+K AA +LG +TL RKL G Sbjct: 415 -------TLEAIERAYIQWVLQNEGGNKSRAADMLGIDPSTLYRKLARYG 457 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 187/470 (39%), Positives = 282/470 (60%), Gaps = 27/470 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + VV+DD + L + L G T +G + L L+ ++ D++++D+++PGM Sbjct: 1 MTKPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL+LL++IK+++ + ++++TA+S + +AV+A + GA +YL KP D++E ++E+ Sbjct: 61 GGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLRE 120 Query: 121 HYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q Q R ++ ++++G +P M +F++I ++ S+ SVLI GE+GTGKEL Sbjct: 121 KQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VAHA+H S RA PF+AL+ AA+ + ++ESELFGHEKGAFTGA R+GRFE ADGGTL Sbjct: 181 VAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE+ +M L VQ +LLRVL G+F RVGG +KVDVR IAAT++NLE+ V EG+FRED Sbjct: 241 FLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNVI + +PPLRER++DIP L+ +F A++ E K PE AL W GN Sbjct: 301 LFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+L+NT V+ + + LP + D Sbjct: 361 IRELQNTIERAIVLCKSDTISVDHLPESI-----------------------MPDNEYIP 397 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + E E+ ++ L+ T G KQ AA++LG + K KE Sbjct: 398 VIKIPIGTTLKEAEKEIIQRTLQITNGSKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 177/473 (37%), Positives = 267/473 (56%), Gaps = 28/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDDD +R +++ L GAG T E G E L A + + D++M M Sbjct: 1 MAGEKILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL+++ P LPVII+TA+ + AV A ++GA+D++ KPF+ + + +E+A+ Sbjct: 61 DGMVLLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALE 120 Query: 121 HYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + ++ +II + MQ V + +++ + +V + GESGTGKEL Sbjct: 121 VGSLRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A LH S R++ PF+A+N AIP+ L+ESELFGH KGAFTGA+ ++G +QA+ GTL Sbjct: 181 IAKVLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 F+DEI ++ +Q +LLRV D +FY VGG PVKVD R++AAT+Q+L + +Q+GKFRED Sbjct: 241 FMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R++VI V+LPPLRER EDIP LA HFLQ + P+ L WPGN Sbjct: 301 LYYRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N V+A + + L L V++S +++ P Sbjct: 361 VRELANVVERAVVLAREGNICAEHL--LLEREAVSDSGTELPP----------------- 401 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L+ A+ E ER L L T+G+ AA G R + L++ ++ Sbjct: 402 -----LTAARDEFERAYLIQVLHSTKGNVSRAAAKAGRYRAEFYKLLRKYDLD 449 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 272/468 (58%), Gaps = 24/468 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ SI L+ AL + L + + DV+L D+++ +DG Sbjct: 1 MKRILIIDDEPSICSSLQFALED-DYETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDG 59 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L++IK++ P VI++TA+ + +V A + GA+ YL KP ++E +++E+A+ + Sbjct: 60 LEVLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYK 119 Query: 123 QEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + +Q + ++ +IG++ AM VF +I ++ SVLI GESGTGKELVA Sbjct: 120 KLNEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H R + F +N AAIP+ L+ESELFG+EKGAFTGA T ++G+F+ A+ GT+FL Sbjct: 180 RAIHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL +Q +LLRVL + ++G K+DVR+IAAT+++L+++V+EG FREDL+ Sbjct: 240 DEIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RL+VI +HLPPLRER+ED+P L +HFL +ELG K + + L +PGN+R Sbjct: 300 FRLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N V+A G+ + ++DLP + E + + D Sbjct: 360 ELSNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLD------------------ 401 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + ELE+ + L+H H+++ A +LG L KLK+ Sbjct: 402 -DYIGRPLKELEKDFILATLKHNDNHRKKTAEMLGISERGLRDKLKQY 448 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 246/470 (52%), Gaps = 34/470 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R V VVDD+ +R L +G + + G LE +A K D++ DI+MP + G Sbjct: 4 RLKVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMPDVSG 63 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L +IK P V+++TA+ ++ AV A ++GA DYL KPFD DE +ER + Sbjct: 64 FEVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQK 123 Query: 123 QEQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ + + ++IG + MQ +F +I ++++ +L+ GE+GTGKE+VA Sbjct: 124 KIVDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGKEMVA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R PF+ +N A + L+ESELFGHE AFTGA ++GR E A GGTLFL Sbjct: 184 KAIHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGGTLFL 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+G++PL +Q LLRVL + F RVGG + + VD R+I ATH++L ++ G FR+D + Sbjct: 244 DEVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFRQDFY 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI V +PPL R +DIP LA+ FL+ +E + + L WPGNVR Sbjct: 304 YRLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+A + + D L Sbjct: 364 ELENAIERAVVLAKERYLTRDDF------------------------------AFLCRSP 393 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ E E+ L L + +AA +L R TL K+++ + Sbjct: 394 AQPFPQSLRENEKQHLERILSFCGWNISKAAAILEISRVTLHSKIRKFDI 443 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 180/469 (38%), Positives = 267/469 (56%), Gaps = 17/469 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +V+D + +R +L AL G N E L LA + +L+D+++PG G+ Sbjct: 3 CILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMD 62 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L PM+PV++MTA + AV A + GAFD++ KP D+ L+ERA+ + Sbjct: 63 VLSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQRL 122 Query: 125 QQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + ++ IIGE P MQ+ R + R++ S +VL+ GESGTGKEL A A Sbjct: 123 MRDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARA 182 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H+ S R+ PF+ALN AA+P+ LIE+ELFGHEKGAFTGANT + G+FE A+ GT+FLDE Sbjct: 183 IHQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDE 242 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++PL++Q++LLRVL + R+G P+++DVR++AAT++ LEQ V+ G FR DL++R Sbjct: 243 IGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYR 302 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L V + +PPLRER ED+ +A HFL +EL L P+ AAL WPGNVR+L Sbjct: 303 LAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVREL 362 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 +NT ++ EV DL + A + L + + +A R+ Sbjct: 363 QNTIERAAIL-HDTEVTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRT---- 417 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +E+ + LR + +K AA LG TL K+ G++ Sbjct: 418 --------IEKAKIEATLRECKWNKSAAAERLGISYKTLLTKIHGYGLD 458 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 189/485 (38%), Positives = 268/485 (55%), Gaps = 17/485 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPG 59 M + V VVDDD + R +++ L G E+G + + LAS DV+L D+ MPG Sbjct: 1 MAK-TVLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPG 59 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 + G L +++ R PVI++TA +D V A Q GA D+ KP + + + A+ Sbjct: 60 ISGQDTLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNAL 119 Query: 120 SHYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 S + + ++ + D+IG +PAM V R+ R +RSSI +LI GESG GKE Sbjct: 120 SMGALKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKE 179 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 ++A A+H S RA PF+A+N AIP++L+ES LFGHEKG+FTGA G+F++A+GGT Sbjct: 180 VIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGT 239 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDE+G++PLD+Q +LLR L + + +G VKVDVRI++AT+++L Q V EG+FRE Sbjct: 240 LFLDEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFRE 299 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV + P LRER+EDIP L F++ E G PET A LT WPG Sbjct: 300 DLYYRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPG-----------ELFESTVAESTSQMQPDSWAT 404 NVRQLEN V+A + D P ++ A + + Sbjct: 360 NVRQLENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPSAGELA 419 Query: 405 LLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + E+ER L+ A+ GH E AR LG GR+TL RK++ Sbjct: 420 AELPQPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKVR 479 Query: 465 ELGME 469 E G+E Sbjct: 480 ENGLE 484 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 251/469 (53%), Gaps = 27/469 (5%) Query: 5 IVWVVDDDSSIRWVLERAL-AGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VDD+ + + + + A T +GAE LE L D++++D+ MP MDG+ Sbjct: 6 RILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGI 65 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL +IK +P + ++I+T+ V A + GA+DYL KPFD + + +SH Sbjct: 66 ELLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKA 125 Query: 124 EQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q + ++IG+ M +++ +I +++++S +VLI GESGTGKEL+A Sbjct: 126 AVQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIAS 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S R PFI +N AA+ + LI SELFGHEKGAFTGA ++G FEQA GGTLFLD Sbjct: 186 AIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGD+ Q LLR+L G F RVGG +K DVR+I AT+++L +E +FREDL++ Sbjct: 246 EIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYY 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + PPLR+RR DIP L R+FL+ + + + L WPGN R+ Sbjct: 306 RLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCRE 365 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + + G+ + LP ++ S DR Sbjct: 366 LANIIEHAVIFSRGRTLDKDSLPSQIRTS----------------------DRHSSGLTL 403 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 NL + + E L+ L + + ++AA LL R TL K+++ + Sbjct: 404 NLATATLADAESALIKKVLEESNWNLKKAAELLDIARGTLYGKMEKYHL 452 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 170/477 (35%), Positives = 258/477 (54%), Gaps = 10/477 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDDD + L LA G + + L +++++D+R+ G Sbjct: 2 MPAASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGE 61 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L+ +K+ H PV++MT ++ + AV A + GA D L KP DE + ++RA++ Sbjct: 62 DGMTLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAMN 121 Query: 121 HYQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + + ++ +I+ M +F +I ++ + S+LI GE+GTGK + Sbjct: 122 QRKIEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGTGKSM 181 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H R PFI + A+P L+ESELFGH GA+TGANT R+G+FE ADGGTL Sbjct: 182 IARAIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGGTL 241 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI +Q +LLRVL + QF +GG VD R+I AT++NL+Q V +G FR+D Sbjct: 242 FLDEIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFRQD 301 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R+NV+ + LP LRER DIP L HFL+ AA G + E L AWPGN Sbjct: 302 LYYRINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYAWPGN 361 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTS----QMQPDSWATLLAQWADR 412 VRQLEN ++A + + DLP ++ ++ + S P A+ A + Sbjct: 362 VRQLENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTASSGASSFNP 421 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A+ G L EA ER ++ +LR ++ A L R TL +K+K LG++ Sbjct: 422 AVLDGCS--LREALEGPEREIILHSLRRHNWNRAATADELEINRTTLYKKMKRLGLD 476 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 188/469 (40%), Positives = 266/469 (56%), Gaps = 16/469 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +V+D+ S+R ++ AL+ AG + AL + D++++D+R+PGM Sbjct: 1 MTPHSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ LL I++ HP VI++TA +++ AV A + GAFD+L KPF D + VER Sbjct: 61 SGMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFR 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ ++ + IGE+PAM VF I L+ + + VL+ G SG+GKELVA A Sbjct: 121 FLDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LHR S R PFI +N AA+P+ L+ESELFGHEKGAFTGA R G+FE ADGGTLF DE Sbjct: 181 LHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G+MPL +Q +LLRVL D + VGG P KV+VR + AT +NLE+ + +G+FREDL++R Sbjct: 241 VGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 +NV+ V LPPLRER D+ L FL+ +A L + AL +PGNVR+L Sbjct: 301 INVVPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N ++ E+ + LP + +T Q P + Sbjct: 360 RNAVEHAVLLCTEGEIHVGHLPERIRAAT------QSMPPACDDDAGDTPAS-------- 405 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L+E ER + AL T G K +AA LLG R L KLKEL ++ Sbjct: 406 -LAEGVARFERRRIMEALERTGGRKIQAADLLGISRKQLWLKLKELSID 453 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 177/475 (37%), Positives = 268/475 (56%), Gaps = 29/475 (6%) Query: 1 MQRGI---VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRM 57 M +G V VV+DDS++R +L+ LA +G +G + L + +V+L D++M Sbjct: 4 MNKGKGAKVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKM 63 Query: 58 PGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117 PG+DG+ L+Q++ + +I+ T H ++ AV + GA+DYL KP +DE ++++ Sbjct: 64 PGVDGIETLRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDK 123 Query: 118 AISHYQEQQQPRNVQLNGP---TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 A + + + N++L ++G +PA+ V ++ R + VLI GESGTGK Sbjct: 124 AYEKNRLRLENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGK 183 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 EL++ A+H SPRA+ PF+ +N + + ESELFGH +GAFTGAN R G FE AD G Sbjct: 184 ELISRAVHDASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTG 243 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLF+DE+ + PLDVQ +LLRVL G F R+GG + VDVR + A+++NL++ V G+FR Sbjct: 244 TLFMDEVSETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFR 303 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL+HR+N++ ++LPPLRER EDI LA F++ AA E + E AALT +WP Sbjct: 304 EDLYHRINLLPINLPPLRERPEDILPLAYFFMKSAAGRED-ENWEITEEAMAALTAYSWP 362 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L NT R ++A Q++ + LP S P + Sbjct: 363 GNVRELRNTIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLPLWV-------- 414 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER + L +G+K AA++L R TL KL+ G++ Sbjct: 415 --------------VERDHIERVLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 162/468 (34%), Positives = 263/468 (56%), Gaps = 20/468 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ SI ++ L G T + + L + D+L DI +P DG Sbjct: 1 MANILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LK+IK+ P L V+I++ H +++ AV A + GA+D+L KP ++ + +V+ + Sbjct: 61 IDGLKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIVKHLQDKF 120 Query: 123 QEQQQPRNVQLNG-PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q + R + + D+IG + + D+ + I +++ ++ V+I GE+GTGKE VA + Sbjct: 121 QLMRDLRESRGDQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLI 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R++ F+ +N AAIP +L+ESE+FGHEKGAFTGA+ ++G+FE+ D GT+FLDEI Sbjct: 181 HMLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEI 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM + Q +LLRVL + F RVGG A V D R+I AT++ LE + +G FREDL++R+ Sbjct: 241 GDMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRI 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLRER +DIP L HF++ A G+E K + E + WPGNVRQL+ Sbjct: 301 NVVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLK 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + V++ + + D P + + + ++ ++ Sbjct: 361 NLVERMVVLSEDSVMSLDDAPDFIQGKHFPQKSYDVE-------------------YEYP 401 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A+ E+ + L++ + +AR+L R L RK+K G+E Sbjct: 402 LKHAKENFEKHYILNILQNNDWNISRSARILEIERTYLHRKIKAYGIE 449 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 192/468 (41%), Positives = 272/468 (58%), Gaps = 17/468 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 +V VVDD+S I L + GL +GAE LE L VLL+D+ MP G+ Sbjct: 16 KVVLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGM 75 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LLK K P V++MTA+ ++ AV A ++GA+D++ KP V +V+ A+ Sbjct: 76 DLLKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQS 135 Query: 124 EQQQPRNVQLN---GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + R ++ + +IG + A + I+ + + S +VL+ GESGTGKEL+A + Sbjct: 136 LVVENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARS 195 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S RA PFIA+N AAIP+ ++E ELFG+EKGAFTGA + R+GRFE A GGTLFLDE Sbjct: 196 LHEGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDE 255 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGY-APVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 +G+MP VQ +LLRVL +G+ R+GG +D+R+IAAT+ L + VQEG+FREDL++ Sbjct: 256 VGEMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYY 315 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI + +PPLRERR+DIP L +HFLQV A + G + L R AWPGNVR+ Sbjct: 316 RLNVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRE 375 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN V++ G+ + LP E+ A + + D L + Sbjct: 376 LENAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGAL-------------R 422 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + E+E ++ LRHT+G K+ AA+LLG T+ R+L+ G Sbjct: 423 FAVGTPLAEIEMAVIHETLRHTKGDKRLAAKLLGIATRTIYRRLEAEG 470 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 175/473 (36%), Positives = 263/473 (55%), Gaps = 28/473 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 RG + +VDD+ + L +L AG + A +AL PDVLLSD+ MPG DG Sbjct: 9 RGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGTDG 68 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL++ + P L IIMT + AV A + GAFDY+ KPF + + + +++RA+ Sbjct: 69 IQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAMEVR 128 Query: 123 QEQQQPRNVQL-------NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + +++ N++ I+G PA++ V ++I +++ ++ +VL+ G SGTGKE Sbjct: 129 RLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTGKE 188 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H +S R P + +N A + + L+ESELFGHEKGAFTGA+ + G FE A+GGT Sbjct: 189 LVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEGGT 248 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LF+DE+ +M +Q +LLRVL DG + RVG + DVRIIAAT++ LE + G+FRE Sbjct: 249 LFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRFRE 308 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF RL+VI V LP L++RRED+P L +HFL R++G + P + L R WPG Sbjct: 309 DLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCRYDWPG 366 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L N ++A G + DLP L + + + + Sbjct: 367 NIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTG------------ 414 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +ER + L G+K +AA+ LG R TL R + + + Sbjct: 415 -------PDDLDRVERHHVRDVLHRHGGNKVQAAKALGVSRRTLYRLIDKYKL 460 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 177/467 (37%), Positives = 266/467 (56%), Gaps = 27/467 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VV+DD ++R VL+ L AG +E + + D++++D+RMP +DG Sbjct: 20 TVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDLDGFD 79 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L++ I P+I++TA +D A+ A + GA DY+ KPF+IDE V ++++A++ Sbjct: 80 LIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALAERAL 139 Query: 125 QQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ +Q +II + M+++ ++ R++ S+ SVL+ GESGTGKELVA A Sbjct: 140 RRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELVARA 199 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +SPRA+ F+A+N+AA+P+ L+ESELFGH KGAFT A + G F +ADGGT+FLDE Sbjct: 200 IHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIFLDE 259 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 I +M +Q +LLR L + + VG P +VDVR++AAT+++L++R+ EG FREDL++R Sbjct: 260 IAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDLYYR 319 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK-LLHPETEAALTRLAWPGNVRQ 359 LNVI++ LPPLR R +DI LA HFL +A+ L L ET+ L WPGNVR+ Sbjct: 320 LNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPGNVRE 379 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + G + +DLP + E + S Sbjct: 380 LANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVARRMN---------------- 423 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +LER + L+ G+K A+ LG R TL RKL E Sbjct: 424 ------LAQLEREFIERILKEEGGNKTRTAQRLGLDRKTLYRKLDEY 464 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 599 bits (1545), Expect = e-170, Method: Composition-based stats. Identities = 174/474 (36%), Positives = 270/474 (56%), Gaps = 27/474 (5%) Query: 1 MQ-RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + +V + +DD +R ++ L G T E+ E L+ + + V+++D+RMP Sbjct: 1 MNAQPVVVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPR 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DG+ +L +Q++P+ VI+MT H+ +++AV + + GAFDY+ KPF+ E VERA+ Sbjct: 61 IDGMKVLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERAL 120 Query: 120 SHYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 SH+ ++ ++ IIG + AM +V R+I + SVLI GESGTGKE Sbjct: 121 SHWNLSRENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA +H SPR F+A+N AAIP+ +IESELFG++KGAFTGA + G FE A+GGT Sbjct: 181 LVARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDE+ + L +Q +LLRVL D FYR+G P V+VR++AAT++++ + + FRE Sbjct: 241 IFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RL VI +H+P LR+RR+D+P LA +F+ A+ + + AL R WPG Sbjct: 301 DLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + ++ G+ + LP E+ T + Sbjct: 361 NVRELENVIQRALILCQGKVIDEGVLPPEISRGTELSVRA-------------------- 400 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ + E+E + LR T G + A +LG ++TL RK+K +E Sbjct: 401 --IDHMQPQTLEEVEVYFIRKTLRETNGDRALCAEILGIDKSTLWRKIKRYSIE 452 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 599 bits (1545), Expect = e-170, Method: Composition-based stats. Identities = 178/464 (38%), Positives = 262/464 (56%), Gaps = 15/464 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +V+D +S+ + L + G + +E+L +TPD++L D+R+P M G+ + Sbjct: 13 LLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDV 72 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L +K+++P +PV+ MTAH +D AV A + GA D+L KP + D V A+ + Sbjct: 73 LYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKASKL 132 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + + N IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S Sbjct: 133 KNEADYPGNQGYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHATS 192 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M Sbjct: 193 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMD 252 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 LD+QT+LLR + G F +VG VDVR + AT+++ + V+EG+FREDL++RL VI Sbjct: 253 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYYRLYVIP 312 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 +HLPPLRER +DI +A L ++E G + L P+ WPGNVRQL+N R Sbjct: 313 LHLPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQLQNVLR 372 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + V+ G+E+ + LP L + T + + ++ Q++ Sbjct: 373 NVVVLNNGKEIDLSMLPPPLNKPTENQIRVDLPVSDEFSV-------------QDIFPLW 419 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+ + A++ G+ +AA L +T+ RKL+ ++ Sbjct: 420 LT--EKRAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQSWNLK 461 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 169/464 (36%), Positives = 258/464 (55%), Gaps = 18/464 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDD+ SI L L G T NG E ++ L+ +PD++L DI MPGMDGL Sbjct: 3 PSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LKQ+++ HP +PV+++T H ++ AV A + GA+D++ KP I++ V + A++ + Sbjct: 63 ETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRR 122 Query: 124 EQQQPRNVQLNG-PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 +++ ++ I G +PA+ +V I ++ + VLI+GE+GTGKE+VA +H Sbjct: 123 LEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R+ P + +N A+I K +ESELFGHEKGAF GA ++GRFE A+ GTLF DE+G Sbjct: 183 HLSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DM ++ Q+R+LRVL + +F RVGG + VDVR+IA+T++NLE+ + +G FREDL++RLN Sbjct: 243 DMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLN 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGV-EAKLLHPETEAALTRLAWPGNVRQLE 361 V+ + +PPL+ER +DIP L F + A + E K + AL R WPGNVR+L Sbjct: 303 VVPIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRELR 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N L + V I+ +P P D L + Sbjct: 363 NLVERLVISTKASHVDIRHIP----------------PAYKDCAQEAIQDCGLDVFEVDS 406 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 +AQ E + L A +G ++ + + LK+ Sbjct: 407 YKDAQKAFEIAYIQRQLVKHDNDPDATAAAIGMDKSAIKKILKK 450 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 194/468 (41%), Positives = 276/468 (58%), Gaps = 19/468 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 +V VVDDD R V L G +GAE L LA P ++SD++MP +DG+A Sbjct: 621 LVLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIA 680 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L++++ P LPV+++TAH+ ++ AV A ++GA YL KP DE ++ A++H + Sbjct: 681 LMERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERA 740 Query: 125 QQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ ++ +I+G APAM++VF ++ +++ + +VL+ GE+GTGKELVA A Sbjct: 741 RRDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARA 800 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +HR SPR PF+A+N AIPKDL+ESE FGHEKGAFTGA R GRFEQADG TLFLDE Sbjct: 801 IHRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDE 860 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GD+ L +Q +LLRVL + + RVG P+KVDVRI+AAT+++LE V EG+FR+DLF+R Sbjct: 861 VGDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYR 920 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI + LPPLRER +D+P L HFL+ A+ G + + P+ AA WPGNVR+L Sbjct: 921 LNVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVREL 980 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N C +M + A + +PD+ A + + L + + Sbjct: 981 RNLCERAVLMG----------WAAVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQR- 1029 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ER LT L+ +G E AR G L K+K G+ Sbjct: 1030 ----LVERFEREYLTRLLKERRGRIGEVARAAGIAERNLYEKMKAYGL 1073 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 165/468 (35%), Positives = 268/468 (57%), Gaps = 11/468 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +VDD+ + L L G F + L L + PD++L D+R+P M+GL + Sbjct: 4 IAIVDDEKVLVNSLRIGLTKKGYRVYPFYDANGFLSYLGANEPDLILLDLRLPDMNGLEV 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L+QI+ + +P +++TAH D+ +AV A + GAFDYL KPFD++E ++++ + Q Sbjct: 64 LRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYLNKPFDMEELELIIKKVLGEAQLV 123 Query: 126 QQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGTGKELVAHA 180 ++ + + +IIG++P M ++++ + +LS + VLI GESGTGK+L+A A Sbjct: 124 KEVEHHRQRSYKAVILENIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDLLAKA 183 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +PR+ PFI +N A++P+ L+ESELFGHEKGAFT A + G E A+ GTLFLDE Sbjct: 184 IHNLNPRSGRPFIEINCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTLFLDE 243 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ + +Q +LL+ + F RVGG + V V+V II AT++NLEQ ++E FR+DLF+R Sbjct: 244 IGELSILLQAKLLKFIETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQDLFYR 303 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + PPLR+R+EDI ++ ++L R+ G + + + + WPGNVR+L Sbjct: 304 LNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGNVREL 363 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 +N L +++ G + + LP + + A + G Q Sbjct: 364 KNLIERLVILSDGATITGRHLPDGMIQPIAASERENRFDPMH------VFKQDFSRGEQI 417 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E +E+ ++ AL K AA+ LG R +L R++ L + Sbjct: 418 PMDEILTAVEKKMIVNALEKADNVKTRAAKALGISRYSLLRRISRLKI 465 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 181/473 (38%), Positives = 261/473 (55%), Gaps = 24/473 (5%) Query: 1 MQRG-IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M R + V DDD + +L+ L LT +G + L+ L D++++D +MPG Sbjct: 1 MSRDLTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DG LL+ +K R +P +++TAH +D ++A + GA +YL KP D + V LVE+ + Sbjct: 61 LDGFELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKTL 120 Query: 120 S----HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + + + + V+ T+I+G++P MQ +F I + S+S+ +VLI GESGTGKE Sbjct: 121 NINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A A+H + P + PF+A+N +A +ESELFGH KGAFT A+ GRFE A+ GT Sbjct: 181 LAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDE+GD+P D+Q +LLRVL D F RVG P+ D R++AAT+++L+ V++GKFRE Sbjct: 241 LFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNVI + P LRE EDIP L HFL+ + G K L + WPG Sbjct: 301 DLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVRQLEN M G + DLP E+ Q D Sbjct: 361 NVRQLENAIESAAAMCDGSMIRTADLPLEIT-------------------APQSEDPLRE 401 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ L E +E+ ++ AL Q K AAR LG ++ K+ G+ Sbjct: 402 DAYRGTLPEVVERIEKHMILRALEQNQWVKAHAARTLGVSERVVSYKMANYGL 454 >UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ22_DESHD Length = 494 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 177/488 (36%), Positives = 272/488 (55%), Gaps = 26/488 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V ++DD+ +R +L + L G E + L + +L DIR+P DGL Sbjct: 6 RVLILDDEEDLRSILAQRLGRRGYEIMEAATAQEGMALLQETIFEAVLLDIRLPDGDGLQ 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL+ +K+R P L VI++T H L++A+ A + GA+DYL KP ++ E +++A+ + Sbjct: 66 LLQAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSELEITLQKALEQRKL 125 Query: 125 QQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + ++ IIG++ M+ + + +++++ VL+ GESGTGKEL A A Sbjct: 126 MVENTGLRQVVHRQNAELLIIGDSEKMRSLKAMTRKIAQTDTPVLLQGESGTGKELFARA 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH SPR+ +I LN A+ + L+ESELFGHEKGAFTGAN ++ G E AD GTLFLDE Sbjct: 186 LHVWSPRSGQAYIPLNAGAVHETLMESELFGHEKGAFTGANAVKLGLVEMADQGTLFLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG+MPL++Q +LLR + G+F RVG +V+VRI+ AT++NL + V+ G+FR+DL++R Sbjct: 246 IGEMPLNLQVKLLRFMETGEFRRVGDNRLRRVNVRIVTATNRNLPEEVKAGRFRKDLYYR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAAREL------------GVEAKLLHPETEAAL 348 L + +H+PPLRER+ DI +LA HFL+ R + L PET+ AL Sbjct: 306 LTGMVLHIPPLRERKGDILQLAEHFLRTGLRRHTLQGGNPAQDRSQSQTIHLAPETQEAL 365 Query: 349 TRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATL--- 405 +PGNVR+L + ++A G + I+DL E E + T PD Sbjct: 366 LAYDFPGNVRELAHLMERGMILAEGPLIRIRDLWPEHGEGRSSIQTELPLPDEERAAEMD 425 Query: 406 -----LAQWADRALRSGHQNLLS--EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNT 458 + D+A + ++L+ E+E+ + ++ G+K AARLLG Sbjct: 426 EKSIKTERQGDQAEQENQGDVLAGYLTLAEIEKDYILATMKKVDGNKARAARLLGISVRN 485 Query: 459 LTRKLKEL 466 L RK++E Sbjct: 486 LYRKMEEY 493 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 180/466 (38%), Positives = 265/466 (56%), Gaps = 22/466 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V +VD+D+++ +E +LA G CT +G E + + +++++D+ M +DG+ Sbjct: 17 RVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVDGME 76 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L + K+ P VI++T H+ + AV A QQGAF++L KP A+ E+A + Sbjct: 77 VLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADAVRL 136 Query: 125 QQ----QPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +Q + + II + M+ V + R++ + SVLI GESGTGKELVA A Sbjct: 137 RQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELVAQA 196 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H++SPR +ALN AA+ ++L+ESELFGH KGA+T A R G FE A+GGTLFLDE Sbjct: 197 IHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGTLFLDE 256 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GDMPL Q +LLRVL + Q RVG P++V+VR+++AT++ LE ++ G FR DL++R Sbjct: 257 VGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRADLYYR 316 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L V+ V LP LR+RREDI LA HF + R K + P L WPGNVRQL Sbjct: 317 LKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPGNVRQL 376 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N + V+ + I DLP EL ++ + A+ SG Sbjct: 377 RNAIETMVVLDTDGILDIDDLPPELVDA------------------EELRTPAIASGPSE 418 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L+ + +ER + L+ T G+++EAAR+LG G TL RKL + Sbjct: 419 LIGQPLDNIERWAIEETLKLTSGNREEAARILGIGARTLYRKLDKY 464 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 168/488 (34%), Positives = 269/488 (55%), Gaps = 22/488 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDD+ + ++ AL+ G G + + +PDV++ D +P ++G Sbjct: 1 MSTILVVDDEPVVTDYIKEALSEEGYAVEVAYTGNDGIVQAKKVSPDVIILDFMLPDLNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +LK+++Q L VI++TA++ + A+ A + GA DY+ KPFD+D V + Sbjct: 61 IEVLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICEKA 120 Query: 123 QEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKEL 176 Q R ++ + ++ + M V+ ++ +++++ +VLI GESG GKE Sbjct: 121 HLTNQLRFLREDNAKKLAGNEFLLCPSVQMAKVYDLVFQVAQTNDTTVLILGESGAGKEH 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A +H++S RA PF+ +N AAIP++L+ESELFGHE GAFT A + + G FE ADGGT+ Sbjct: 181 IAKLIHQNSSRAAKPFVEMNCAAIPENLLESELFGHEPGAFTDARSKKLGLFEYADGGTI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDMPL Q ++L+VL +F RVGG +K DVR++AAT+++L + G FRED Sbjct: 241 FLDEIGDMPLATQAKILKVLETKEFRRVGGLRDIKSDVRVVAATNKDLSFEIDRGNFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL V+ + +PPLRER+EDI LA FL++ R + + L + +AL W GN Sbjct: 301 LYYRLQVVPIDIPPLRERKEDILHLANFFLEMTGRSMRKRLE-LSGDAASALLSYTWKGN 359 Query: 357 VRQLENTCRWLTVMAA-GQEVLIQDLPGELFESTVAESTSQ----MQPDSWATLLAQWAD 411 VR+L+N ++ G +L + L + S+ +PD A Q Sbjct: 360 VRELKNVIERAVIVTPNGSRILPEHLAFKPMSVAELAKKSEEFLIPKPDYEARQAEQQRQ 419 Query: 412 RALRSGHQNL----------LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461 RS + L ++ER L AL T G++ +AA+LLG R+ L Sbjct: 420 AEQRSNGLSFSLSKFYDGFSLKAHLEQIERQYLLDALEKTGGNQLQAAKLLGIERHVLRY 479 Query: 462 KLKELGME 469 ++K+ ++ Sbjct: 480 QMKKYEID 487 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 188/471 (39%), Positives = 271/471 (57%), Gaps = 11/471 (2%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 Q+ V +VDD+ S R L ++ G+ T +G E LE L S DV+L+D+ MPG+D Sbjct: 3 QQIRVLIVDDEESQRAGLAAMVSAWGMLPKTAADGNEALETLNSFPADVILTDLNMPGLD 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQ-QGAFDYLPKPFDIDEAVALVERAIS 120 G L+++++ M P I++TA+ +++ AV GA+ +L KP LV RA S Sbjct: 63 GFGFLQRLREAGDMPPTIVLTAYGNIETAVKTVHELGAYWFLEKPIQAGTLEVLVRRAGS 122 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H + Q+ R ++ N G +++G++P MQ++F ++ + S VLI GESGTGKE+ Sbjct: 123 HAELNQEKRVLERNLVYKGSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGKEM 182 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA LH SPR + PF+A+N AA+P+ LIESELFGHEKG+FTGA R G FE A GTL Sbjct: 183 VARTLHALSPRRQGPFVAINCAALPESLIESELFGHEKGSFTGATERRAGCFELAQNGTL 242 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIG+MP+ Q +LLR+L D + R+GG +VDVR++AAT++ E+ VQ G RED Sbjct: 243 LLDEIGEMPMATQAKLLRILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQGGHLRED 302 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV VHLPPLR+R++DI +A + R+ + L R WPGN Sbjct: 303 LFYRLNVFHVHLPPLRDRKDDIQAMADALIADLNRKHECRVTEIAAAVMTCLQRHNWPGN 362 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N ++A + ++ LP L ++ A + +P + A A + Sbjct: 363 VRELRNVLERAVILAGEGTIEVKHLPVFL-QNRPATVVASDEPAAVAATAADDLETV--- 418 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + L+ E E+ L+ L HT +K AA +LG TL KLKE G Sbjct: 419 --RFLIGTTVEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLKEYG 467 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 169/474 (35%), Positives = 265/474 (55%), Gaps = 16/474 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERAL--AGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M + + ++DD+ + L R L + TF + LE++ + DVLL DIRMP Sbjct: 1 MSKQRLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIRMP 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 MDG+ +L +K+ P + V+++TA+ ++ AV A ++GA+D++ KPF+I + V ++ +A Sbjct: 61 EMDGMEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLNKA 120 Query: 119 ISHYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + ++ N++ P D +G++P M+ ++ I L+ + +VLI GESGTGK Sbjct: 121 LERSLLIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA ALH SPR+ + +N AIP+ L+ESELFGH+KGAFTGA G F +AD Sbjct: 181 ELVARALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEADKS 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TL LDEIGD+P+ +QT+LLRVL + + +G KVDVRI++ T+Q+LE R+Q+ FR Sbjct: 241 TLLLDEIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRSFR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RLNV+ + P L E EDIP LA HFL+ ELG+ K ++ +WP Sbjct: 301 EDLYYRLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKSWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L+N R + + + +E+ D+ S + Q ++ Sbjct: 361 GNVRELQNFVRRVALFSPEEEIGAADI----------RVAQDSLYGSAESRQDQDSNGKA 410 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +Q E R +T L T+G+ A+ + G R L + ++ + Sbjct: 411 VKPYQQAKEELLENFTREYITRLLGQTEGNVTRASDIAGISRTALQKIMRRYEI 464 >UniRef50_Q12CJ7 Nitrogen metabolism transcriptional regulator, NtrC, Fis family n=33 Tax=Proteobacteria RepID=Q12CJ7_POLSJ Length = 494 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 271/493 (54%), Positives = 343/493 (69%), Gaps = 31/493 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA----SKTPDVLLSDIRMPGMD 61 +W+VDDD SIR+VLE+AL L +F N EVL AL + P VL+SDIRMPG Sbjct: 4 IWIVDDDQSIRFVLEKALLREDLPTRSFTNPREVLLALENATEEEGPQVLVSDIRMPGGS 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL+++KQ+ P LPVIIMTA SDLD+AVSA+Q GAF+YLPKPFD+ +AV L+ RA+ Sbjct: 64 GLDLLEKVKQKLPGLPVIIMTAFSDLDSAVSAFQGGAFEYLPKPFDLPKAVELIRRAVEE 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q ++ + +++G+APAMQDVFR IGRLS+S ++V+I GESG+GKELVA AL Sbjct: 124 SQ--REEVAEERMAAAPEMLGQAPAMQDVFRAIGRLSQSMVTVMITGESGSGKELVARAL 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+HSPRA PF+A+N AAIPKDL+ESELFGHE+GAFTGA T+R+GRFEQA+GGTLFLDEI Sbjct: 182 HKHSPRANGPFVAINTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDMP D+QTRLLRVL+DG FYRVGG+ VK +VR+IAATHQ+LEQRV+EG FREDLFHRL Sbjct: 242 GDMPFDLQTRLLRVLSDGHFYRVGGHNAVKANVRVIAATHQDLEQRVKEGGFREDLFHRL 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVIR+ LP LRERRED+ L RHFLQ +A++LGVE K + L+ ++PGNVRQLE Sbjct: 302 NVIRLRLPALRERREDVFMLTRHFLQQSAKQLGVEPKRISDAALQQLSNFSFPGNVRQLE 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELF--ESTVAESTSQMQPDSWATLLAQWADRALRSGH- 418 N C WLTVMA Q + +DLP E+ A S P + T + A+ +G Sbjct: 362 NICHWLTVMAPAQVIEAKDLPPEVLGVPHEPAPGASDKAPLAPVTPTMHMPEPAVLAGPA 421 Query: 419 ----------------------QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGR 456 ++ E L+ TAL +T+G + EAA+ LG GR Sbjct: 422 AGEQNWEAGLEAEALALLAAGRSDVWDVLTRRFESRLIQTALLNTRGRRIEAAQKLGIGR 481 Query: 457 NTLTRKLKELGME 469 NT+TRK++EL +E Sbjct: 482 NTITRKIQELNLE 494 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 177/471 (37%), Positives = 274/471 (58%), Gaps = 18/471 (3%) Query: 5 IVWVVDDDSSIRWVLERALA-GAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V VV+D R L+ L L T E+GA L L +K ++++D+RMP + G+ Sbjct: 9 RVLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDLRMPRVGGM 68 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L++ I+ + VI+ T + ++ AV A + G +D+L KP D +V+RA+ Sbjct: 69 KLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRDRA 128 Query: 124 EQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q + ++ +++ +P M D+F +IG ++ ++ +VLI GE+GTGKE +A Sbjct: 129 LQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIAR 188 Query: 180 ALHRHSPR-AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H+ S F+A+N A+ ++L+ESELFGHEKG++TGA+ R GRFE A GTLFL Sbjct: 189 AIHQASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFL 248 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+P+ +Q +LLRVL + +F RVGG P+++DVR++AATHQ++E+ V++GKFREDL+ Sbjct: 249 DEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLY 308 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+R+ +PPLRER EDIP L HF Q R +G + + PE LT+ WPGNVR Sbjct: 309 YRLNVVRIDIPPLRERTEDIPVLVSHFCQKFVR-VGQKPPTISPEALDLLTKCPWPGNVR 367 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 QLEN V A + +DLP E+ + + + L Sbjct: 368 QLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHV-----------DLNRKL 416 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + LSE E + AL+ ++GH + A++ G R ++T K+ + ++ Sbjct: 417 PDQLSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQYKID 467 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 181/474 (38%), Positives = 278/474 (58%), Gaps = 32/474 (6%) Query: 1 MQR-GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + + +V+DD++ R +L L G E+G L+ L ++ D++LSD+R+PG Sbjct: 1 MSKTARILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVERA 118 ++GL L ++ + P +++TA ++ AV+A ++G D+L KP D LV R Sbjct: 61 LNGLELFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRRT 120 Query: 119 ISHYQEQQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++ +++ + +Q P +++ AMQ V +I ++ + +VLI+GESGTGK Sbjct: 121 LAVSMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 EL A +HR SPR APF+ALN AAIP+ L+ESELFGHEKGAFTGA RQG+FE A GG Sbjct: 181 ELAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASGG 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIG++PL +Q++ LRVL + F RVGG ++ DVRIIAAT+++LE+ V+ +FR Sbjct: 241 TLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRFR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RL+V +HLP LR+RR+ +P L R+ L+ AA + G E + + + AA+ WP Sbjct: 301 EDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+L+N ++ GQ V + DLPG + + T + + Sbjct: 361 GNIRELQNVIERAVILCKGQ-VTLLDLPGGVRQVTASGVIPKSNG--------------- 404 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + ER + AL +++ AA LG + TL +LKE G+ Sbjct: 405 ----------SLRDRERNDILDALATCGNNRRLAAEKLGISKRTLQYRLKEYGL 448 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 182/473 (38%), Positives = 265/473 (56%), Gaps = 38/473 (8%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+R V +VDD+ +L++ L G + + L + DV L DI M GM Sbjct: 1 MRRCRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGLALL++ K+ P L +I++T ++ +D A+ A ++GA+DYL KP E ++++A+ Sbjct: 61 DGLALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALD 120 Query: 121 HYQEQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q N+ Q +IIG + A+ + +I R+S SS+ VLI GESGTGKEL Sbjct: 121 RKKLQDYSNNLIETIQRTNKKREIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA+ALH HS RA PF+ +N +AIP L+ESELFGH KGAFTGA ++G E AD GTL Sbjct: 181 VANALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM +Q +LLR L G+F VGG K +VR++AAT+ NLEQ ++EG+FRED Sbjct: 241 FLDEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+V+ +++PPLRER D LA +FL+ + + K L E E L +PGN Sbjct: 301 LYYRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSK-----KKLSKEAEMFLLNYTFPGN 355 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N +++ ++ D S Sbjct: 356 VRELANLIERGILLSKDNDLYPNDFFARETYS---------------------------- 387 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 N+ S A ++E+ + L T +K EAA++L G TL RK++E ++ Sbjct: 388 -KNNMKSLALQDIEKEHICQVLEKTGWNKTEAAKILKIGLRTLYRKIEEYKLQ 439 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 160/469 (34%), Positives = 268/469 (57%), Gaps = 16/469 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGA-GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V + DD+ +R VL + + +VL L + +L++D+++PG + + Sbjct: 13 RVLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSNSI 72 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 ++ +K + +P+I++TA+ + A+ ++G FDYL PFD D V+RA+ Sbjct: 73 DFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKVSS 132 Query: 124 EQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +N++ L +IIG +P++ + R++G ++R+ +VL+ GESGTGKELV+ Sbjct: 133 LTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSR 192 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+ALN AAIP++L+ESELFG+EKGAFTGA ++GRFE A GGT FLD Sbjct: 193 AIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLD 252 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI +M VQ ++LR++ + R+GG +KVDVRII AT+++L Q V+EGKFR+DL++ Sbjct: 253 EISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYY 312 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R++V + LP LRER DI L++HF+ + ++G +L E E L + W GN+R+ Sbjct: 313 RISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNIRE 372 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N ++ + + LP + ++ + + + Sbjct: 373 LQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPN-------- 424 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +LE+ L+ AL ++ + +AA+LLG R T +L++ G+ Sbjct: 425 ---GLSLDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGI 470 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 184/502 (36%), Positives = 263/502 (52%), Gaps = 39/502 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V ++DD+ S+ R L G +G + E +A DV + D+++P DGL+L Sbjct: 7 VLIIDDEQSVGTFFSRLLKPKGYRVGVACSGVQAHELVAKDHYDVAMVDLKLPDADGLSL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFD-IDEAVALVERAISHYQE 124 L+ IK P VIIMT +S AV A Q GAFDY+ KPFD I L+E+A++ Sbjct: 67 LQHIKNVQPQCEVIIMTGYSTTRTAVKAIQYGAFDYIEKPFDDILLIEKLIEKALNFGMT 126 Query: 125 QQQPRNV-----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q ++ +G P M + I R++ I+VLI GE+GTGKE++A Sbjct: 127 DGQMDKETFSWSKVAEKIGFQVGRTPQMIKLVSIAERIAAKDINVLIQGETGTGKEVLAR 186 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H S R+ PF+A+N A+P++L+ESELFGHE+G+FTGA+ R+G FE A+ GTLFLD Sbjct: 187 FVHAASQRSDKPFLAINCGALPENLLESELFGHERGSFTGASVQRKGIFELANNGTLFLD 246 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+ L +Q +LLRVL G+F RVGG PVK +VRIIAAT+ +LE+ V++ +FREDLF+ Sbjct: 247 EIGEASLAIQVKLLRVLETGEFLRVGGEKPVKTNVRIIAATNVDLEEAVKQKQFREDLFY 306 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL+VIR+ LPPL+ER EDIP+ HF+ P A+ WPGN+R+ Sbjct: 307 RLDVIRLVLPPLKERLEDIPQFVEHFVNRFWERNDGPVPAFAPSCIEAMLNYHWPGNIRE 366 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD-------- 411 L N+ + G VL + L G++ + + + + S+ L+ Sbjct: 367 LANSVEQALALCDGNAVLPEHLSGKINGQFLNDERTDKKALSYHPGLSDATSVLNVKPED 426 Query: 412 -------------------------RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQ 446 + G + ELE + L G+ Sbjct: 427 LDQLDQQALLDLYHKVDGLYRAIHRTMGKKGITTVFPLTIQELEARAIEETLEFFNGNVS 486 Query: 447 EAARLLGWGRNTLTRKLKELGM 468 +AR LG GRNTL RK KE + Sbjct: 487 MSARALGIGRNTLYRKAKEYNI 508 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 168/471 (35%), Positives = 270/471 (57%), Gaps = 26/471 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +VDD++ R +L L G T +G + + S+T V+L D++MPGMDGL+ Sbjct: 6 RILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGMDGLS 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+ K+ P + +I++T H ++ A+ A ++GA+DYL KP++++E L+ +A+ Q Sbjct: 66 FLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVEKQQL 125 Query: 125 QQQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 ++ + ++ T I+ E+P +++V R++ + VL+ GESGTGK+++A Sbjct: 126 TEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKDVIAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ++ +S RA F+ +N+ AIP+ ++ESELFGHEKGAFTGA ++G E A GTLFLD Sbjct: 186 LIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GD+P +Q +LLR L G+F R+G KVDVRIIAAT+ +LE++V+EG FR DL+ Sbjct: 246 EVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRSDLYF 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL+V+ + +PPL +R EDI L+ FL R+ K L + +AAL ++PGNVR+ Sbjct: 306 RLHVMDITIPPLTQRSEDILPLSAFFLNRLKRKY--PVKPLSVKAQAALLAYSFPGNVRE 363 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L + V+A G+E+ +DL + + +DR L + + Sbjct: 364 LAHMIERAVVLAKGEEIDDKDL-----------------FPHEQPVPSNPSDRKLTTSAE 406 Query: 420 NLLSEA--QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 EA +ER + L +Q +K + A LG L RK++E + Sbjct: 407 TGEEEAFLLKNVEREHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIEEYEL 457 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 192/467 (41%), Positives = 264/467 (56%), Gaps = 22/467 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + +VDD+++ L RA AG T +N LE SK D++LSD+ MPG DG Sbjct: 4 KAEILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMPGRDG 63 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL+ +K PV++M+ + ++ AV A + GA D+L KP D+ + VE A+ Sbjct: 64 LTLLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENALKLK 123 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + + + R+++ +I+ + AM+ V I R++ S V I GE+GTGKEL A LH Sbjct: 124 RLETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTLH 183 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 SPR PFI LN AA+P +LIESELFGHEKG+FTGA G+FEQA GTLFLDEIG Sbjct: 184 EKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFLDEIG 243 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DMPL +Q +LLRVL +G+ RVGG + VDVR+I ATH+NLE V+EGKFR+DLFHR+ Sbjct: 244 DMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLFHRVY 303 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V + LPPLR RREDIP L HF + G + E AL R +WPGNVR++ N Sbjct: 304 VFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVREMRN 363 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 L ++A EV + L E+ A S + P L Sbjct: 364 VVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGP----------------------L 401 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 S + ER ++ L+ + H A+ LG R+ L +K + LG++ Sbjct: 402 SSRVAQYEREVILAELQRQKHHITNTAKALGLERSHLYKKCQALGID 448 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 172/478 (35%), Positives = 266/478 (55%), Gaps = 16/478 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VDD+ ++ +LE LA AG T N E L+ L D+++SD RMPG+ G Sbjct: 40 MATILYVDDEVAVGLILEDTLAQAGHTPVGARNVPEALQVLERGGIDLIISDYRMPGLTG 99 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L ++ + + +P+I++T H+ ++ AV++ + GA DY+ KP + V++A+ Sbjct: 100 LEFIQLLTREGYDIPLIMLTGHASIEHAVTSIKAGAIDYITKPVRPQQLELAVDQALEFV 159 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + +++ ++ IIG++PA++ + + + + + +VL+ GESGTGKEL A Sbjct: 160 RLRRENETLRKEVMQFRNERQIIGDSPAIRRILQTVSMAAPTRATVLLQGESGTGKELFA 219 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R PFI LN AA+P+ L+ES LFGHEKGAFTGA +G FE+A+ GTL L Sbjct: 220 RAIHDQSERRDKPFIKLNCAALPEGLVESALFGHEKGAFTGAIKRVEGAFERANRGTLLL 279 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEI +M LD+Q +LLRVL + +F RVGG +P+KVDVRI+A T+++L G FR+DL+ Sbjct: 280 DEISEMRLDLQAKLLRVLQEQEFERVGGTSPIKVDVRIVATTNRDLAMEADHGTFRQDLY 339 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+ I V +PPLR+R ED+P LA F A E+G + + L + +L + WPGN+R Sbjct: 340 YRLSTIPVLIPPLRDRAEDVPVLALRFAMRTAAEIGKKIEGLSQDALESLQQYPWPGNIR 399 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWA-------- 410 +L++ ++ + L G F + M+P + AT AQ Sbjct: 400 ELQHVIERAVILTPDPIIQPHCLEGTRFGLAHSLGAPNMRPRAIATPGAQPVLAVSGAAA 459 Query: 411 ----DRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 +G L S + ER L+ AL ++ +AA +LG TL KL Sbjct: 460 APGSMNTPPNGGIALSSLNVADAERVLIQHALAAADNNRTKAADMLGISVRTLRNKLN 517 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 181/468 (38%), Positives = 261/468 (55%), Gaps = 34/468 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD R + + L+ +G LE + DV + D++MPGM GL L Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L K +HP VI++T +++AV A + GAFDYL KPF + + +E+A + + Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDRHLLR 128 Query: 126 QQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + ++ + P + +IG++ AMQ++ R+I R S ++LI GESGTGKELVA AL Sbjct: 129 KENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARAL 188 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA P + +N AA+P+ L+ESELFGHEKGAFTGA + G FE ADG TLF+DEI Sbjct: 189 HAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLFIDEI 248 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+MP +Q +LLRVL DG R+G +V+VRI+AAT+++++ V G FREDL++R+ Sbjct: 249 GEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDLYYRI 308 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + LPPLR R DIP L HFL + P +AL + AWPGNVRQL Sbjct: 309 NVMSLELPPLRSRTADIPLLVEHFLGK--------DWRIEPTALSALEQYAWPGNVRQLI 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N +MA G+ + DLP E+ + D Sbjct: 361 NAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDD--------------------- 399 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++R + L+ +G+K AAR+LG R L R L++ +E Sbjct: 400 -IDDLSAIQRQKIVEVLKREKGNKSRAARMLGIDRRKLYRLLEKFTIE 446 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 174/480 (36%), Positives = 258/480 (53%), Gaps = 21/480 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ A +G E LE L V+++D RMP M GL L Sbjct: 9 ILVVDDEQDNLDAFRFNFKRA-FRLLCASSGEEALEILRDNEVAVIVTDQRMPRMTGLEL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQG-AFDYLPKPFDIDEAVALVERAISHYQE 124 L + + P II+TA++DLD V A G + Y+ KP++ E ++ A+ Y Sbjct: 68 LLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILTHALERYAL 127 Query: 125 QQQPRNVQLN---------------GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGE 169 ++ + + +IIG++ A+ +V + +++ ++ +VL+ GE Sbjct: 128 LRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLRGE 187 Query: 170 SGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE 229 +GTGKELVAHA+H +S R PF+ +N AA+ ++ESELFGHEKGAFTGA R GRFE Sbjct: 188 TGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVAQRPGRFE 247 Query: 230 QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 ADGGTLFLDE GD+P++VQ +LLR L + +F RVGG +KVDVR+I+AT+++LE ++ Sbjct: 248 LADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNRDLEAMIE 307 Query: 290 EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 G FREDL++RLNV +HLPPLR+R ED+P L HF+ AR + L Sbjct: 308 AGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRGAALDKLR 367 Query: 350 RLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQW 409 WPGNVR+LEN ++A G+E+ L + S + Sbjct: 368 SYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVISETASHSP- 426 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L L+E + ER + A+ + + AAR+LG R+TL ++++ G+E Sbjct: 427 ---PLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRKHGLE 483 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 178/469 (37%), Positives = 271/469 (57%), Gaps = 14/469 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + ++ VVDD+ SIR L L G ENGA+ L+ + + PD++L DI MPGM Sbjct: 1 MSK-LILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L+QI+ P L V++M+ H ++ AV A + GAFD++ KPF +D+ + + A++ Sbjct: 60 DGIQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALN 119 Query: 121 HYQEQQQPRNVQLNG-PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +++ ++L+ +++G + ++ + I R++ +S VLI+GE G GKELVA Sbjct: 120 FKELRKENEALRLSALKEHEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVAR 179 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+A+N A+P+ L+ ELFGHE+GA+TGAN+ ++GR + ADGGT+FLD Sbjct: 180 AIHHYSTRRDKPFVAVNCMAVPEALLADELFGHERGAYTGANSQKRGRLDLADGGTVFLD 239 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+ ++ L Q LLR+L D F R GG PV++DVR++AAT ++LE+ VQ+G FREDL+ Sbjct: 240 EVHELSLKAQGELLRILTDHSFERCGGSRPVRIDVRVVAATSRSLERAVQDGLFREDLYQ 299 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 L V+ L PLRER EDIP L +HF+++ R G E K A L WPGN+R+ Sbjct: 300 FLQVVPFELVPLRERSEDIPLLVKHFVRLFHRREGWEPKTFDDSALACLKSYDWPGNIRE 359 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N + +MAAG + DLP + S+ + Sbjct: 360 LKNIVERILIMAAGPVITADDLPALMPGGNCKASSRLQEAAEQG------------EAAV 407 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L A+ ER + L + + +AA LL R L RKL + G+ Sbjct: 408 GSLRSARERFERDFILQTLLRSAWNLDKAAALLEMERTVLQRKLLQYGL 456 >UniRef50_D2UGQ5 Probable two-component regulatory system regulatory ntrc transcription regulator protein n=1 Tax=Xanthomonas albilineans RepID=D2UGQ5_XANAL Length = 474 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 241/460 (52%), Positives = 316/460 (68%), Gaps = 3/460 (0%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL-ASKTPDVLLSDIRMPGMDGL 63 +WVVDDD S+R+VL AL AG + +F+N L+AL PD+L +D+RMPG DGL Sbjct: 10 RIWVVDDDRSVRFVLSTALRDAGYSVDSFDNAIAALQALVERSPPDLLFTDVRMPGDDGL 69 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL ++K HP LPVI+M+A++D+ + A++ GA ++L KPFD+D+AVAL RA+ Sbjct: 70 VLLDKLKAAHPQLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAARALPESS 129 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + ++IG+ PAM+ +FR IGRL+++ +SVLINGE+GTGKELVAHALH Sbjct: 130 PGVVATPPVSAHGSAELIGDTPAMRALFRAIGRLAQAPLSVLINGETGTGKELVAHALHN 189 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 SPRA+ PF+ALN AAIP +L+E+ELFGHE GAFTGA GRFEQADGGTLFLDEIGD Sbjct: 190 ESPRARKPFVALNTAAIPAELLENELFGHEAGAFTGAQRRHIGRFEQADGGTLFLDEIGD 249 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 MPL +QTRLLRVLA+ +F+RVGG ++VDVR+IAATHQ+LE V++G+FR DL HRL+V Sbjct: 250 MPLPLQTRLLRVLAENEFFRVGGRELIRVDVRVIAATHQDLEALVEQGRFRADLLHRLDV 309 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 +R+ LPPLRERR D+P+LA +FL +AAR+L K L P A L AWPGNVR+LEN Sbjct: 310 VRLQLPPLRERRTDVPQLAENFLAMAARKLDTPPKRLSPAALAVLRGYAWPGNVRELENV 369 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 C L +A + + D+ L E + W T L+ WA + L G + L + Sbjct: 370 CWRLAALAPAEVIDAHDVDSALLRGGRRERSGDG--GEWETQLSAWAQQRLSDGAEGLHA 427 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 EA+ ++ LL ALR T G + EAA LG GRNT+TRKL Sbjct: 428 EARERFDKALLEVALRFTHGRRAEAAARLGVGRNTVTRKL 467 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 171/472 (36%), Positives = 272/472 (57%), Gaps = 17/472 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + ++D++ + ++E+ L +G + + + +E ++ D++++DI+MPGM Sbjct: 3 DKQRILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMPGMT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +L+++K++ LPVII+TA++ ++ ++ A ++GA+D L KPF+ DE V V+ A+ Sbjct: 63 GLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNALQQ 122 Query: 122 YQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q ++ R ++ +IIG + A+++V + +++ S+LI GESGTGKEL+ Sbjct: 123 AQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H HS R + F+A+N +P+ ++ESELFG+ KGAFTGA RQG E ADGGTLF Sbjct: 183 AQAVHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+G++P++VQ LLR L + +F RVG +VDVRII+AT+ +L++ V+ G FREDL Sbjct: 243 LDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ +HLPPLR+R +DIP LA HF+ + ++ G K + L WPGN+ Sbjct: 303 YYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWPGNI 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQL N M A + + L Q+ ++ Sbjct: 363 RQLRNVIEACMAMEASDYISLDTL-------------GQVIDLPEGRIVPATVQAGPVLS 409 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +EA ER LL L+ G AAR G TL RK+K G++ Sbjct: 410 DDLPFTEALERFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKRYGLK 461 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 169/467 (36%), Positives = 268/467 (57%), Gaps = 29/467 (6%) Query: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALL 66 +VDD+ +R + R + GL +G E + ++ D++ D+RM GM G+ +L Sbjct: 11 LIVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVL 70 Query: 67 KQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQ 126 IK + V+++T ++ D + A + GAFDYL KPF +D+ +++RA Sbjct: 71 GWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPA 130 Query: 127 QPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q + + GP ++G +P MQ++F + +++ + +VLI GESGTGKELVA A+ Sbjct: 131 QTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAI 190 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H HS R + F+ ++ +A+ ++L+ESELFGH KG+FTGA ++G FE A+ GT F DEI Sbjct: 191 HYHSRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEI 250 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++ +D+Q +LLRV+ + +F +VGG +KVD+RI+ A++++L + E KFREDLF+RL Sbjct: 251 SNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRL 310 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +VI +HLPPLRER +DI L +F+ +R++G EA + E L AWPGNVR+LE Sbjct: 311 HVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELE 370 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 NT ++ + + LP ++ + LRS + Sbjct: 371 NTIERTLILKDDAVIKPEHLPQDIRQQPP----------------------DLRSFSDKM 408 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +S +LER + L T G Q+AA +LG R TL+ K+K+ G+ Sbjct: 409 VS--LKDLERDYIRFVLSRTNGGIQKAAGILGINRKTLSMKMKKYGL 453 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 262/472 (55%), Gaps = 31/472 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + ++DDD+SI VL+ L G + + ++G E L +++L D+R+ Sbjct: 1 MSKEKILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLSEE 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ L++ I + +P LP+II+TAH +++AV A ++GA+ Y+ KPF D+ ++ A+ Sbjct: 61 NGIELMRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNALE 120 Query: 121 HYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q+ + IIG+ M ++ ++ R+S++ +V+I GESGTGKEL Sbjct: 121 KQRLTQEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H++S RA PFIA N AIP+ L+E+ELFGH +GA+T A+ ++G F QAD G++ Sbjct: 181 IARAIHQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKGSI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI + + Q +LLRVL + + VG K++VRIIAA++ +L++ V EG FR+D Sbjct: 241 FLDEISNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFRDD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+R++V+ V+LPPLR+R++DIP LA +F+ + L + P + WPGN Sbjct: 301 LFYRIHVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+L N ++A + +D+ + +R + Sbjct: 361 IRELRNKIEHAAIVANKNNIEPEDI---------------------------FPERNTTT 393 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +A+ ER + L+ G+ A+++ R + + +K+ + Sbjct: 394 NVFHSYKDAKERFEREYIENLLKANNGNITNASKMASRYRADIYKLIKKYNI 445 >UniRef50_D2R521 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R521_9PLAN Length = 474 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 179/466 (38%), Positives = 260/466 (55%), Gaps = 17/466 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G + VVDD++ R + L AG + E L+ L S+ D++L+D++MPGMDGL Sbjct: 12 GRILVVDDNARARQSMCDVLRHAGNDVQMCASAIEALQKLPSQEFDLILTDLQMPGMDGL 71 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 ++ ++ R V+++TA + + +AV A + GA DYL KPFD D+ LV+RA++ + Sbjct: 72 QFIRALQDRKIDSQVVMVTAFASVSSAVEAMRHGALDYLEKPFDADQLEQLVQRALARGR 131 Query: 124 EQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 V + +IG + AMQ + I + + +VLI+GESGTGKELVA + Sbjct: 132 RGAAHSAVTSSSQPWHSMMIGTSSAMQRLRSQIAVAAPTGETVLISGESGTGKELVARCV 191 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA ++LN A+ L+ESELFGHE+GAFT A+ R GRFE ADGGT+ LDEI Sbjct: 192 HAASGRATKALVSLNCPALSPQLMESELFGHERGAFTSADAPRVGRFELADGGTILLDEI 251 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++ L +Q +LLRVL + F RVG ++VDVR+IA T++ + Q V G+FR+DLF+RL Sbjct: 252 TEIELPLQAKLLRVLQEKSFERVGSSETLEVDVRVIATTNREIRQEVVAGRFRQDLFYRL 311 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V+ + +P LR+RRED+P L HFL AA L + L WPGNVR+LE Sbjct: 312 AVVPLVVPALRDRREDVPLLVEHFLGAAAVRLERSPITVDRAASDLLCSYHWPGNVRELE 371 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N +++A +++ DL L E S + L A Sbjct: 372 NLMTRASILATSEKLSADDLRSWLLEPEAMHSAGSGNSSGESELQAGMK----------- 420 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 ++ER L+ L H +GH+ AA+ LG G TL+ KL++ G Sbjct: 421 ----LEDMERRLIEATLDHYEGHRARAAQALGIGIRTLSNKLRQYG 462 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 179/498 (35%), Positives = 269/498 (54%), Gaps = 36/498 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM-- 60 V +VDD+ ++ ++ L G + N + + AL TP+++++D+ + Sbjct: 1 MAKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRA 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL +L++ + P VI++TA ++ AV A + GA+DYL KPF +DE ++RA+S Sbjct: 61 HGLEILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALS 120 Query: 121 HYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + + ++ + IIG A MQ+VF++I R + + ++LI GESGTGKEL Sbjct: 121 YNEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA ALH +S R APFI +N +A+P++L+ESELFGH KG+FTGA T ++G F++ADGGT+ Sbjct: 181 VARALHFNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDKKGLFQEADGGTI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG M +Q+RLLRVL + + RVG P ++VR++AAT++ LE+++++G FRED Sbjct: 241 FLDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKKIKDGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQ-VAARELGVEAKLLHPETEAALTRLAWPG 355 L++RLNVI + +P LRERR+DIP LA HFL+ G + + + LT WPG Sbjct: 301 LYYRLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQ-ITRQALDLLTTYDWPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + + I+DLP L S ++ + L Q Sbjct: 360 NVRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADVAQLPQPTTPPTS 419 Query: 416 SGH----------------------------QNLLSEAQPELERTLLTTALRHTQGHKQE 447 L + E E L L G K++ Sbjct: 420 LVPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLNRTLALFGGDKEK 479 Query: 448 AARLLGWGRNTLTRKLKE 465 A LG TL RKL E Sbjct: 480 TALHLGISLATLYRKLSE 497 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 171/465 (36%), Positives = 260/465 (55%), Gaps = 27/465 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + VDD S VL+R L G T E L L D++++D RMP Sbjct: 3 EKIRILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMPQAT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL L++ +++ H + ++++T + + AV A + GA +YLPKPF +E ++R + Sbjct: 63 GLDLIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRIVER 122 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + V++ T I+G +P MQ VFR IG+ + ++ +VLI+G+SGTGKELVA A+ Sbjct: 123 VHRRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVARAV 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H HS R APF+ +N AAIP L+ESELFGH KGAFTGA R G FE A+GGT+FLDEI Sbjct: 183 HYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD ++Q +LLR+L ++ +VG VD RI+AATH++L++ V++G FREDL++RL Sbjct: 243 GDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +V+ + +P L ER +DI L +FL ++ + + E AL +WPGNVR+LE Sbjct: 303 HVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVRELE 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + + V+ + + DLP + S + Sbjct: 363 NLIQRMVVIVDHDPIEVTDLPPNMRFSLP---------------------------MEER 395 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + E+E+ + L T +K AA +LG R TL KLK + Sbjct: 396 VDRSLAEVEQEHIKNVLIMTDNNKTRAAEILGINRKTLREKLKRM 440 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 274/473 (57%), Gaps = 28/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + VVDD++ R L L AG + +G E L ALA + D++L+D+RMPGM Sbjct: 1 MSRARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL +K+R P + VI++T H+ +D AV+A GAF Y+ KP ++E +A +A+ Sbjct: 61 DGLELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKALE 120 Query: 121 HYQEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +++ +++ + +IG++ M+ + I +++R +VL+ GE+GTGKEL Sbjct: 121 KNAMRRELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA +H S RA+ F+A+N A ++LI +ELFGHE+ AFTGA R+G E A GGTL Sbjct: 181 VARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++PL +Q +LLRVL + F RVGG +D R+++AT+++L++ + G FR+D Sbjct: 241 FLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFRQD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RL+VI +H+PPL ERREDIP LARHFL A E G + L PE +L +PGN Sbjct: 301 LFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNVR-LSPEVLDSLLLYEYPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + + G + + L +L + V + + Sbjct: 360 VRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPT-------------- 405 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E E+ + L +G+K +AAR+LG R +L RKLK +E Sbjct: 406 ---------LEEHEKAYIRDVLEEVEGNKSKAARVLGIDRVSLWRKLKRYSLE 449 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 183/481 (38%), Positives = 268/481 (55%), Gaps = 14/481 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL--ASKTPDVLLSDIRMP 58 M + V +VDDD + R +++ A+ G E+G LE A V+L D+ MP Sbjct: 6 MAK-TVLIVDDDPTQRRLMQAAVERQGFRARLVESGDLALEEASDAKNGISVVLLDLIMP 64 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 G+ G+ L+++ +R P LPVI++TA +D V A + GA D+ KP + V + A Sbjct: 65 GLSGMETLERLLERRPDLPVIVLTASGGIDTVVQAMRAGAVDFFVKPASPERIVVSLRNA 124 Query: 119 ISHYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + + + + + D+I AP M+ V R+ R ++S+I +LI GESG GK Sbjct: 125 LKVSDLRGEVKRLSKKSEGTLGFDDMIAGAPLMRQVVRLGQRAAKSNIPILITGESGVGK 184 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E+ + + S RA PFI +N AIP++L+ES LFGHEKGAFTGA+ + G+F +ADGG Sbjct: 185 EVASQCIQSASERAGKPFITVNCGAIPENLVESILFGHEKGAFTGAHEKKLGKFAEADGG 244 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDE+G++PLD+Q +LLRVL +G+ VG P KVDVRII+AT+++L Q V EG+FR Sbjct: 245 TLFLDEVGELPLDMQVKLLRVLQEGEVDAVGSRKPTKVDVRIISATNRDLAQAVSEGRFR 304 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RLNV + +P LR+R+ED+P L HF++ + G+ ET + WP Sbjct: 305 EDLYYRLNVFPIEMPSLRDRKEDLPALVDHFIRRFNAQEGMSITGASLETMGMIAAHDWP 364 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDL-------PGELFESTVAESTSQMQPDSWATLLA 407 GNVRQLEN+ +++ G E+ D P T S + AT L Sbjct: 365 GNVRQLENSIFRAMILSEGDELQPVDFPHISGLTPNYEILKTPNNGASISDAATTATQLN 424 Query: 408 QWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + N +ER L+ A+ GH + AR LG GR+TL RK++E Sbjct: 425 SPLGGPVSIVDDNGELRPLESVERDLIQYAIDLYSGHMSQVARRLGIGRSTLYRKVREYD 484 Query: 468 M 468 + Sbjct: 485 L 485 >UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing protein n=23 Tax=Bacteroidetes RepID=C6XZM7_PEDHD Length = 468 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 162/468 (34%), Positives = 259/468 (55%), Gaps = 5/468 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ +IR L L +NG + LE + K D++L DI+M MDG Sbjct: 1 MAKLLIIDDERAIRSTLREILEYENYEVEDIDNGIDGLELIKKKKFDLVLCDIKMNKMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L+Q P LP I+++ H ++ A+ A ++GAFD++ KP D++ + V A+ Sbjct: 61 MEVLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKPPDLNRLLITVRNALDRG 120 Query: 123 QEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + ++ T DI+G + + + I R++ + VLI G +G+GKELVA L Sbjct: 121 NLVTETKVLKRKVSKTRDILGSSENIGKIKETIERVAPTEARVLITGANGSGKELVARWL 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA++P I +N AAIP +LIESELFGHEKG+FT A R G+FE A+GGTLFLDEI Sbjct: 181 HEKSQRAESPLIEVNCAAIPSELIESELFGHEKGSFTSAVKQRIGKFELANGGTLFLDEI 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L Q ++LR L + + RVGG ++V+VR++AAT+++L + ++ G FR DL+HRL Sbjct: 241 GDMSLSAQAKVLRALQEHKITRVGGEKELEVNVRVLAATNKDLLKEIEAGNFRMDLYHRL 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI +H+P L ER EDIP +A +FL+ R+ G+ K + AL L W GNVR+L Sbjct: 301 NVINIHVPHLTERTEDIPEIALNFLEEICRDYGMPVKKISDGAMTALQALPWTGNVRELH 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N L +++ + + D+ + + T+ ++ + N Sbjct: 361 NMIERLIILSD-KVITENDV---IAFANPGGGTNIGAVNTANGQSGLAHGPTVDYDKFNN 416 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + + ER + L + + A + R+ L K+++ G++ Sbjct: 417 FQDYKDHAEREFIKFKLEKNNWNVSKTADDIEIQRSHLYSKIEKFGLK 464 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 198/468 (42%), Positives = 279/468 (59%), Gaps = 26/468 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +V+D+ ++R VL L G + E+ + L +A + P ++L+D R+PGM Sbjct: 1 MRSQKILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G LL +IK+R P PV+I TA+ +++ AV A + GA YL KP D E VA++ +A+S Sbjct: 61 SGTELLARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALS 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 PR+ L P IIGE+P ++ +I ++ + +VLI GESGTGKE+VA Sbjct: 121 CRGHTNPPRSQDL--PRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARG 178 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH SPRA APF+A N AIP DL+ESE+FGHEKGAFTGA + G+ E A GTLFLDE Sbjct: 179 LHVASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDE 238 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GDMPL +Q +LLR L + ++ R+GG P+++ RIIAATH +L + V+ G FREDL++R Sbjct: 239 VGDMPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYR 298 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI +H+PPLRERRED+ L HFL+ ELG + AA+ +WPGN+RQL Sbjct: 299 LNVIPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQL 358 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN L V+ G +L DLP E+ + T +++P A L Sbjct: 359 ENIVERLVVLNRGGTILAADLPNEMRTTE----TERIRPFGGAYDLH------------- 401 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +ER + +AL Q +K +AA LLG R L ++K LG+ Sbjct: 402 -------AVEREAVVSALNKAQSNKSQAALLLGISRKQLHTRMKNLGL 442 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 254/468 (54%), Gaps = 26/468 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 R + DD+++++ ++ L G T +G + AL T D ++ D+ MPGM+ Sbjct: 12 NRLKILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMN 71 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ ++ + K+ P +++T S D+A++A + GAFDYL KP + + AL+ R + Sbjct: 72 GIQVIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAK 131 Query: 122 YQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + R ++ T+++G + AM V ++I +++ + +VL+ GE+GTGKELV Sbjct: 132 REWVNKCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELV 191 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H+ S RA+ PF+A+N A+P+ LIESELFGH KG+FTGA+ R G FE A GGT+F Sbjct: 192 ARAVHQQSLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGADDHRVGLFEVAHGGTIF 251 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++P +Q +LLRVL G+ RVG VDVR++ ATH+NL + V+ G FREDL Sbjct: 252 LDEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDL 311 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 +R+N +H+PPLRER +DI LA H L+ L PE L + WPGNV Sbjct: 312 MYRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGNV 371 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N +++ + ++LP L + T Sbjct: 372 RELANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPI--------------- 416 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + +LE + AL G+K EAA LG TL KL + Sbjct: 417 -------SLRDLEMQAIHEALDRHNGNKPEAAEELGISLKTLYNKLNQ 457 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 171/474 (36%), Positives = 273/474 (57%), Gaps = 22/474 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTF----ENGAEVLEALASKTPDVLLSDIRMP 58 R V +VD+D + + +L G CT E+G + L+ + + DV+++++ M Sbjct: 14 RVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITELMMD 73 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 +DGL +L++ K P VI++T H+ + +A++A Q GA YL KP DI E V+RA Sbjct: 74 EVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDRA 133 Query: 119 ISHYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 S + ++ R + +IG +P+M + + ++ + +VLI GESGTGK Sbjct: 134 SSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGK 193 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+H++S R PF+ LN++A+P+ ++ESELFGHE GAFTGA T R G+FE A+GG Sbjct: 194 ELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYANGG 253 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDE+G+MP+ Q +LLRVL + + R+G + ++VR++AAT+ +L+ +++G FR Sbjct: 254 TLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKGTFR 313 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 +DL+ RL+V+ + LPPL +RR DIP L HFL+ A + + + AL AWP Sbjct: 314 KDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAYAWP 373 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+L N + V+ ++ + DLP + S + + Sbjct: 374 GNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQN-------------- 419 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +G+ L+ + ++E+ + AL T G + EAA LLG G TL RK++E + Sbjct: 420 PAGNDGLIGRSLNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIREYEL 473 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 199/466 (42%), Positives = 280/466 (60%), Gaps = 8/466 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDDD IRW+L++ L G+ + AE ALA V D+ +P +G Sbjct: 2 KMRALIVDDDEGIRWILDKVLQEEGVDVVQAGSIAEAKAALADGDFSVTFLDVYLPDGNG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL +PV+++TA + A AY+ GA +YLPKPFD+DE L +S Sbjct: 62 MDLL----ASGLSMPVVMLTAETTFGHAAEAYRMGAMEYLPKPFDLDEVRQL----LSRV 113 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + Q+ IIG +PAMQ +FR +GR++ S ++VLI GESGTGKE+VA LH Sbjct: 114 RPAQKASAPAQKMADGLIIGRSPAMQQMFRTLGRVASSDLTVLITGESGTGKEMVAKTLH 173 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA F+A+N AAIP DL+ESELFGHEKG+FTGA+ +R+GRF QADGGTLFLDEIG Sbjct: 174 ERSQRADKAFVAINTAAIPADLLESELFGHEKGSFTGADKMREGRFVQADGGTLFLDEIG 233 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DMPL +Q +LLRVL +G+ RVGG V+VR++AATHQNL ++ +G+FREDL++RLN Sbjct: 234 DMPLALQAKLLRVLEEGRVQRVGGSESKVVNVRLLAATHQNLNTKIAKGEFREDLYYRLN 293 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 VI V +PPLR+RR+DIP LA L+ A +ELG+E +L + L+R WPGNVR+L+N Sbjct: 294 VIPVQIPPLRDRRDDIPELANFLLEQAVKELGMEQPILLDDAMDLLSRHDWPGNVRELKN 353 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 R L V+ G + + D+ L + D+ Q+ + + NL Sbjct: 354 VMRRLAVLTPGATITLTDVALALGNVDNHTGEEETLADAVTRCTRQYLHQLGYASATNLH 413 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++E LL AL G++ + + +LG RNT+ + L + + Sbjct: 414 QHLLEQIEPPLLVLALEQCNGNQLKVSEMLGLNRNTVRKLLNKYNI 459 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 184/469 (39%), Positives = 269/469 (57%), Gaps = 26/469 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 RG + +VDD+++ R L L G T T +G + L L PDV+L+D++MPG+D Sbjct: 3 SRGRILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGLD 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ ++++ + P ++MTA + +AV A ++GA++YL KP D +VERA+ Sbjct: 63 GIRMMEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVER 122 Query: 122 YQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q+ ++ +I P+M V R++ +++ S SVLI GE+GTGKEL+ Sbjct: 123 ARLLQENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +HR SPRAKAP + LN AA+ + L+ESELFGHE+GAFTGA R+GRFEQA GGTLF Sbjct: 183 AEMIHRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ ++PL Q +LLR L + F RVGG +KVDVRI+AA++++L QR+ EG FREDL Sbjct: 243 LDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ + +PPLRERR DIP LA FL A+E G + E +ALT ++PGNV Sbjct: 303 YYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V+ G + ++ LP ++ + Sbjct: 363 RELENAIERAAVLCDGARIELRHLPAQMSSEPAESVDA---------------------- 400 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + +LER + L +G +AA +LG + KL E Sbjct: 401 MPRVPGSTIYDLERYAILRTLEACKGSTSKAATILGISPRKIQYKLHEY 449 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 182/468 (38%), Positives = 261/468 (55%), Gaps = 29/468 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 R + VDDD I VLE L AG T +GAE LE LA + +++SDIRMPGMD Sbjct: 7 TRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGMD 66 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL+++++R LP+I +TAH + AV A + GA DYL KPFD E + V + Sbjct: 67 GMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFAR 126 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 R L + ++G++ AM+D+ +I R++ ++VL+ GESGTGKELVA+ + Sbjct: 127 AAGNDATRERDL--GESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR SPR P + ++ + P L+ESELFGH KG+FT A ++G EQA+ GTLFLDEI Sbjct: 185 HRRSPRKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEI 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++ ++Q RLLR L + + R+G ++VD R+IAAT+ ++ ++V EG FREDL +RL Sbjct: 245 GNISTEMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V+ +++PPLRERREDIP LA HF + G+ + ET A L WPGNVRQL Sbjct: 305 KVVTINVPPLRERREDIPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQLR 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V+ G + +DL L + + Sbjct: 365 NALEAGVVLCTGGVLAPKDLQLPLAGKGPDRAGESL------------------------ 400 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E E+T + AL ++ AA LLG R L K+++ G+E Sbjct: 401 ---SLDESEKTAIVRALEQANWVQKAAAPLLGVSRRALNYKIQKYGIE 445 >UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax=Rhodopirellula baltica RepID=Q7USH9_RHOBA Length = 514 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 186/479 (38%), Positives = 275/479 (57%), Gaps = 13/479 (2%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + V+DDD +I + E+ALA + N A+ L L D +L DI++P + Sbjct: 27 SMPNLLVIDDDRTILALAEKALAPI-ADVSVAANAADGLGLLREGEFDAVLLDIQLPDQN 85 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GLA+ +I++ +PVI MT + + A+ A Q GAFDY+ KP +++ LVE+AI Sbjct: 86 GLAVYCEIREHDRRIPVIFMTVEAASNTAIEAMQLGAFDYIAKPLNVESLRDLVEKAIEQ 145 Query: 122 YQEQQQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q P + + D IG +P M DVF+ +G++++ + +L+ GESGTGKEL Sbjct: 146 RQISSVPVAISADDEGGDQSAELFIGRSPVMLDVFKAVGKVAKQDVPILVRGESGTGKEL 205 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA AL ++S R+ F+A+N AA+P +L+ESELFGHEKGAFTGA + R G+FEQ +GGTL Sbjct: 206 VARALFQYSHRSDETFLAVNCAALPDNLLESELFGHEKGAFTGAESRRIGKFEQCNGGTL 265 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM VQ ++LRVL + +F RVGG + +VRIIAAT++ LEQ V +G +RED Sbjct: 266 FLDEIGDMAPTVQAKVLRVLQEQRFERVGGNKELTTNVRIIAATNRPLEQMVVDGDYRED 325 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE-AKLLHPETEAALTRLAWPG 355 L +RLN + + LPPLR+R D+P L R FL A E + L PE LT WPG Sbjct: 326 LLYRLNGVTIELPPLRDRLSDVPALIRFFLAQAKIEFNKPDLEGLSPEAVDLLTVYDWPG 385 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFES------TVAESTSQMQPDSWATLLAQW 409 NVRQL R + + LP + + + + + +++ ++ + L Q Sbjct: 386 NVRQLRAVIRRCVLDTVMPVITPDTLPDAIAGTRNSGAKSESGTNEKLESEAPGSQLPQL 445 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 R L+ N+ EA +ER ++ L+ T G++ +AA +LG R L ++ + Sbjct: 446 VQRLLKEKSTNVYGEAMEYMERFVILQVLQSTDGNQSQAAEILGITRGKLRDRINSYNI 504 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 164/467 (35%), Positives = 255/467 (54%), Gaps = 27/467 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 ++ VDDD + R G F + + L A + D++++D+ MPG+ G+ Sbjct: 5 ANIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMPGLSGM 64 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL +I+ +PVII+T +S +D A+ A + GA D++ KP+D DE + L+ER + + Sbjct: 65 DLLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERTLEGER 124 Query: 124 EQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +++ R ++ ++G AM+ V+R+I +++ +V+I GESGTGKELVA Sbjct: 125 LKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTGKELVAR 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H P A PF+ ++ AI L+ESELFGHEKGAFTGA + G E A GGT+FLD Sbjct: 185 AIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATGGTVFLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI ++ +Q +LLRV+ + Q RVG P+ +DVR IAAT++NLE ++ G+FR DL+H Sbjct: 245 EICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEFRHDLYH 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+++H+PPLR RREDIP L + F++ A+ + + P L WPGNVR+ Sbjct: 305 RLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDWPGNVRE 364 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N +A G + + + A + Sbjct: 365 LRNLVERTIALADGPVLHLD-----------------------RQWPSTGAASTAAAQAL 401 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + LER + L+ G++++ AR LG ++TL RKL++ Sbjct: 402 DADQPDLATLERRYILKTLQRLDGNREQTARALGINKSTLWRKLQQY 448 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 183/468 (39%), Positives = 270/468 (57%), Gaps = 12/468 (2%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +++DD++ + +L AL G ++ E + D++L+D+ +PGM G+ Sbjct: 4 HILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGMSGVE 63 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 + Q+++ P +I+MTA+S + A+ A + GA+D+ KPF + E +V RA+ + Sbjct: 64 AIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRALEKRRL 123 Query: 125 QQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q++ ++ + P IIG++ M+ V ++ +++ +VLI GESGTGKELV+ Sbjct: 124 QKEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKELVSDT 183 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 L S RA APF+ +N AAIP+ L E+ELFGHEKGAFTGA + + G+FE A GGTL LDE Sbjct: 184 LRALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGATSAQPGKFELAHGGTLLLDE 243 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMP +Q +LLR + + Q R+GG PV V+VRIIAAT+QNL + V FREDL++R Sbjct: 244 IGDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFREDLYYR 303 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L V + LPPLR+R+EDIPRLA H L+ LG+ + AL WPGNVRQL Sbjct: 304 LGVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWPGNVRQL 363 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N + A G+ + QD+ L V TS + + A A+ LR Sbjct: 364 ANLLERAAISAQGR-ITAQDIAAAL---AVQNGTSPQPCTAQSPHDAPAAEDCLRM---- 415 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E ++ER LL ALR +G ++ AA LLG + KL++ + Sbjct: 416 PLRETLHQMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQKHQI 463 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 178/469 (37%), Positives = 265/469 (56%), Gaps = 28/469 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG-MDGL 63 + +VDD+ +IR L R L T + E L+ + ++++D++MPG DGL Sbjct: 39 HLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGDRDGL 98 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L+ I+QR P I++TA+ ++ AV A ++GAFD++ KP D++ V +A H+Q Sbjct: 99 ELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAAEHHQ 158 Query: 124 EQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + +++ G T IG Q++ I +++ + +VL+ GESGTGKEL+A Sbjct: 159 LRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKELIAR 218 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S R APF+A+N+ A+P+ L+ESELFGHEKG+FTGA+ + G FEQA GGTLFLD Sbjct: 219 AVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGTLFLD 278 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI ++P Q LLRVL GQ+ RVGG ++ + RI++AT+Q + V++G FREDL++ Sbjct: 279 EITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFREDLYY 338 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLN+I + +PPLR RREDIP L HFL+ K + PE L++ WPGNVRQ Sbjct: 339 RLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPGNVRQ 398 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N L V + +L DLP EL + A+ST+ Sbjct: 399 LRNHIERLVVTVPAETILAADLPCELHQQNAAQSTA-----------------------L 435 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E E+T + AL + H+++ A+ LG TL K+ + Sbjct: 436 KTLVEITESAEKTGIELALSAKKSHREQTAKALGISVRTLHYKMNRYNL 484 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 177/469 (37%), Positives = 258/469 (55%), Gaps = 26/469 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VVDD+ ++ ++ AL G +GA L L K +++++DIRMP +DG Sbjct: 5 KARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMPELDG 64 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LLK + R I+MTA ++ AV A + GA+DYL KP D+ A+V +A+ Sbjct: 65 MQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKALELQ 124 Query: 123 QEQQQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + ++ + ++GE+ M+ V + +++S ++VLI GESGTGKELVA Sbjct: 125 TVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGKELVAR 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H S RAK PFI +N AA+ + L+E+ELFGH KG+FTGA + GRF ADGGTLFLD Sbjct: 185 LIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGGTLFLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGD+ Q LLRVL DG F VGG +V+VR+I AT++ L++ V GKFREDLF+ Sbjct: 245 EIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFREDLFY 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL ++ + +PPLRER EDIP L FL+ ++ + L E R WPGNVRQ Sbjct: 305 RLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWPGNVRQ 364 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N L V + V +++LP L + + ++ Sbjct: 365 LRNVIERLVVTSPNAVVGVEELPDFLVAHDRSTNFFTVR--------------------- 403 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E E+ L+ L +++EAA+ LG R TL KLK+ G+ Sbjct: 404 --VGMTLAEAEKLLIRQTLSQLTSNREEAAQALGISRRTLQYKLKQYGL 450 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 165/469 (35%), Positives = 272/469 (57%), Gaps = 30/469 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V ++DD+ +R + +R +A G N + + + DV+L D+++P G+ Sbjct: 3 GTVLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGSGV 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + IK+++P + +I++TA+ ++ V A + GAFDYL K D + + L+ RA+ Q Sbjct: 63 DYARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEKVQ 122 Query: 124 EQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q++ ++ I+G + ++D +++ + +VL+ GE+GTGKE+ A Sbjct: 123 LQKRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQ 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+ALN +A ++L+ESELFG++ GAFT AN ++G E+A+ GT+FLD Sbjct: 183 AIHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MPLD+Q++LLRVL G+F +VG P KV+VRIIAAT+++L++ Q+G FREDL++ Sbjct: 243 EIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV + LPPLRER++DIP+LA +F+ + + ++ + + P L W GN+R+ Sbjct: 303 RLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNIRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N +MA G ++ ++ LP +L + A + Sbjct: 363 LKNVLERAVIMAGGDDLAVEHLPLDLQIADKASTPLSAFD-------------------- 402 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +E+ + L HT+ +K EAARLL G TL RK++E G+ Sbjct: 403 ------LASVEKLHIIRVLYHTKNNKTEAARLLNIGLATLYRKIEEYGL 445 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 159/467 (34%), Positives = 266/467 (56%), Gaps = 45/467 (9%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V ++DD+ + + L+ ++ G + + +++L + ++++D++MP MDG Sbjct: 1 MKSVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL++I++R PVI++T + +++ AV A + GA DY+ KPF ++ +LV R I Sbjct: 61 LQLLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLIP-- 118 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 +I+ E+ M+ + I+ ++R+ I+VL+ GESG GKE++A +H Sbjct: 119 -------------EQDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIH 165 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 +HSPR+ PF+A+N AAI + L+E+ELFGHEKGAFTGA + G+FE A+ GT+ LDEI Sbjct: 166 KHSPRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEIS 225 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +M +Q +LLRV+ + + RVGG P+ +DVRIIA T+++L + V++G FREDLF+R+N Sbjct: 226 EMAYRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRIN 285 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V + +PPLRER +DI LA FL+ + ++ + + + L + +W GNVR+LEN Sbjct: 286 VFPIRIPPLRERSDDIIPLAEFFLKRLSNKMSKNF-TITEDMKKFLLKKSWQGNVRELEN 344 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V++ + + + LFE + Sbjct: 345 FIYRSAVLSQDGILRLHEDEINLFEEEKPVKAGK-------------------------- 378 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ER L+ AL+ T+G++ +AA++LG TL K+ E G++ Sbjct: 379 ---LKDAERELIVDALKKTEGNRTKAAKILGISVRTLRNKINEYGLK 422 >UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Firmicutes RepID=B8FXS0_DESHD Length = 463 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 265/468 (56%), Gaps = 16/468 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + ++DD+ ++R ++ + L G E L L D +L DI++P DGL Sbjct: 6 KILILDDEEALRAIIAQRLKRKGYEVLEAGTAGEGLAFLNDTLVDAVLLDIKLPDGDGLL 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL +IKQ L VI++T + +++A+ A + GA+DYL KP ++ E +++A+ + Sbjct: 66 LLPKIKQMQTDLQVIMLTGNGTIESAIEAMKLGAYDYLTKPCNLSELEITLQKALEKRRL 125 Query: 125 QQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + ++ + I+ E+ AM + + +++++ SVLI GESG GKEL+A A Sbjct: 126 LLENTGLRQVVSRHASELKIVAESEAMTSLLNMTRKVAQTDTSVLIQGESGVGKELIAQA 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S R P I +N AIP+ LIESELFGHEKGAFTGA T + G E AD GTLFLDE Sbjct: 186 IHFWSSRVNRPCIPVNAGAIPETLIESELFGHEKGAFTGAGTQKIGLVEMADNGTLFLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG+MPL +Q +LLR L G+F RVG +VDVRI+AAT+++L Q + +G+FREDLF+R Sbjct: 246 IGEMPLAIQVKLLRFLESGEFRRVGDTRLRQVDVRIVAATNRDLGQEIAQGRFREDLFYR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LN + + +PPLRERR DI L HFL+ +EL E L PET+ L +PGN R+L Sbjct: 306 LNGLTLLVPPLRERRGDILPLVHHFLKTQRKELPHERYSLAPETQEQLLNYDFPGNTREL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 + +++A + D+ E T+ S++ + + + + +L Sbjct: 366 FHLIERGQILSADGIITPGDIWPEKSAPTLKSSSAFASEEEFLQIFQEHPYPSL------ 419 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++E+ + + L+ +G+K + A +LG L RKL+ G+ Sbjct: 420 ------DDVEKAYILSTLKKAKGNKTQTAHILGISVRNLYRKLQTYGV 461 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 193/466 (41%), Positives = 265/466 (56%), Gaps = 25/466 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 R V VVDD + +L+ L G GA+ + L ++ D +L D+RM +D Sbjct: 3 SRARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQDVD 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G +L ++ P LPV++MTA +++AV A ++GAF Y KPF +DE +ERA+ Sbjct: 63 GFDVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERALEQ 122 Query: 122 YQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + R ++ ++G + AM+D++ +I R++ S VL+ GESG+GKELV Sbjct: 123 RRLRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGKELV 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH R PF+A+N A+P L+ESELFGH KGAFTGA T R+G F +ADGGTLF Sbjct: 183 ARALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM ++Q RLLRVL DG+ VG VDVR++AATHQ+LE RV+EG+FR D+ Sbjct: 243 LDEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFRADV 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE-AKLLHPETEAALTRLAWPGN 356 F+RLNV+ + LPPLRERREDIP L HFLQ A + PET AAL L W GN Sbjct: 303 FYRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPWAGN 362 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + L V+ + + V + L L T E+ L Q Sbjct: 363 VRELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLRQ-------- 414 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRK 462 LE + A+ G+K +AA LLG +T+ R+ Sbjct: 415 ------------LETEYIAWAVARCGGNKTKAAELLGIDVSTIHRR 448 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 158/460 (34%), Positives = 257/460 (55%), Gaps = 15/460 (3%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 VVDD+ +I +L L+ G+ +E + K D+ L D+R+P G+ +LK Sbjct: 5 VVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGIDILK 64 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 QIK+++P V+I+TA + + AV A + GA+DY+ KPF+I++ ++ +++ Sbjct: 65 QIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEKIDLERR 124 Query: 128 PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187 V+ + G++ A+Q+V I +++ I+VLI GESGTGKE+ A +HR S R Sbjct: 125 IC-VEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSR 183 Query: 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD 247 PF+A+N A++P +L+ESELFG++KGAFTGA + ++G E+A+GGTLFLDEIG+MP+ Sbjct: 184 KNKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEMPMP 243 Query: 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 +Q +LLR L + +G +KVDVRII+AT++NLE+ +++G FREDL++RL I + Sbjct: 244 LQAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIK 303 Query: 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWL 367 +P LRER+EDIP L L+ + K + P+ L + GN+R+L+N Sbjct: 304 MPSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLLEKA 363 Query: 368 TVMAAGQEVL-IQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQ 426 +++ G+E+ I P + + + S+ L E Sbjct: 364 VILSDGEELNFIPAFPEKFNSLYIDNPEDEFTVKSF-------------PEEGVDLKEVL 410 Query: 427 PELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +E+ L+ AL +G K +AA +L +L + Sbjct: 411 SRIEKALIFKALEKAEGKKSKAADILRLTFREFRYRLSKY 450 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 162/467 (34%), Positives = 267/467 (57%), Gaps = 28/467 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DD+ +R +L R +A G + L+ L+ DV+L D+++P G+ Sbjct: 60 KKILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGV 119 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L K IK+++P +I++TA+ ++ V A + GAFDY+ K D + L+ +A Sbjct: 120 ELAKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAA 179 Query: 124 EQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 ++ ++++ T+IIG++ ++ + +++ + ++L+ GE+GTGKE+ A Sbjct: 180 LARRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQ 239 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+ S R F+A+N +A +DL+ESE+FGH+ GAFTGA R+G FE+A GT+FLD Sbjct: 240 AIHQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLD 299 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+G+M LD+Q +LLRV+ G+F +VG P KV+VRIIAAT+++L ++ G FREDLF+ Sbjct: 300 ELGEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFY 359 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R++V ++ LP LR+R EDI LA+HF+ ++ + + P AL AW GN+R+ Sbjct: 360 RISVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIRE 419 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N ++++G E+ DLP ++ +S Q+ S Sbjct: 420 LKNVIERAVILSSGTELAPDDLPIDIQFHPSVKSGKQLSAFS------------------ 461 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +E+ + L HTQG+K EAARLL G TL RK++E Sbjct: 462 ------LQSVEKLHIQKVLNHTQGNKAEAARLLEIGIATLYRKIEEY 502 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 176/471 (37%), Positives = 262/471 (55%), Gaps = 26/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R +VDD SIR + G C+ E+ L AL +++PD++L+D+RM + G Sbjct: 6 RIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRMGELSG 65 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L +K+ P V IMT + ++ AV + + GA+DY+ KPF ++E +++R Sbjct: 66 IDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQRMAEKV 125 Query: 123 QEQQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ I+G + +QDV R++GRL + VLI GESGTGKELVA Sbjct: 126 RLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKELVA 185 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H AK PF+A++ ++ LIESELFGHEKGAFTGA ++G F+ A+GGT+FL Sbjct: 186 RAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANGGTIFL 245 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++PLD+Q +LLRVL D Q VG VKVDVR+IAAT+++LE + G FR+DL+ Sbjct: 246 DEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTFRKDLY 305 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+ V+LP LRER+ DIP L +HF+ + G E + + +L + WPGNVR Sbjct: 306 FRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYDWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN + G+ + + DLP L ++ + Sbjct: 364 ELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVS-------------------- 403 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + S ++ERT + G K A ++LG R TL RK+K ++ Sbjct: 404 EGYDSTDLEDIERTTIQRVFDQVGGDKGLALKMLGISRATLYRKIKRYNID 454 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 187/471 (39%), Positives = 278/471 (59%), Gaps = 27/471 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + V+DD S R +++R LA + F + A+ + A+ D +++D+RMPG+D Sbjct: 5 KKPSLMVIDDLDSARQMMKRTLARS-YDVYDFASVADAVPAVERADFDCIVTDLRMPGID 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L++ + + P +PVI++TA + ++ AV A + GAFDYL KPF+ +E +V RA+ H Sbjct: 64 GIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAVEH 123 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +++ ++ I+G++ AM+D+ ++ R++ S + +LI GESGTGK+L+ Sbjct: 124 ARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKDLL 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A H S RA+ P++ALNM+AIP++L ESELFGHEKGAFTGA+ R G F +A+GGTLF Sbjct: 184 ARAAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGTLF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+G +P +Q +LLRVL DG+F VG P K +VR++AAT+++L++RV+EGKFREDL Sbjct: 244 LDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RL V+ + LPPLRERREDIP L H +Q A L E AL WPGN+ Sbjct: 304 WFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALLDHPWPGNI 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LE+ ++A G + + DLP EL A + Sbjct: 364 RELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGAD--------------------- 402 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + A+ ER L LR G AA L G R+T KL G+ Sbjct: 403 -EGRYRRARDAWERRFLEDVLREAGGQVARAAELSGLHRSTFYEKLARHGL 452 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 170/470 (36%), Positives = 267/470 (56%), Gaps = 26/470 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + ++DDD+S +L +G G LEA A+ PDV++ DIR+P M Sbjct: 1 MCKKKILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI- 119 DG+ +L+ + + VI++TA+ D++ V A + GA++Y+ KP D+DE V RA+ Sbjct: 61 DGIEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALK 120 Query: 120 -SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 S +E ++ V+ +IG + M++VF++IG LS ++++VLI GE+GTGKEL+A Sbjct: 121 NSELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H + P PFI +N +AI L+ESELFGHEKGAFTGA ++G+FE A GT+FL Sbjct: 181 RAIHDYGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+G++P+++Q +LLR L D F RVGG + R+I AT+++L Q V+ G FREDL+ Sbjct: 241 DEMGEIPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+ ++++PPLR+RREDIP L H ++ ELG + + + WPGNVR Sbjct: 301 YRLSAAKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N + G+ + L + A + + P A L Sbjct: 361 ELRNVLTGAAISTRGETL----LDDAILPFLGAGTVQDIFPPGAALSLR----------- 405 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER + L +T G+ +A++LG R TL +K+++ + Sbjct: 406 ---------EVEREHILKILHYTNGNITSSAQILGISRPTLRQKIRQYKI 446 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 180/461 (39%), Positives = 263/461 (57%), Gaps = 19/461 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + + +DD +R + AL AG T +GA+ L A+ + D++L+D+R+PG+DGL Sbjct: 2 KLLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLT 61 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L ++ ++ P V++MTA++D D AVS ++GA DY+ KPF++DE + ++R + Sbjct: 62 LFRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHAF 121 Query: 125 QQQPRNVQLNGPT-TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 ++ + GP ++G++ M+ V + + S + VL+ GE+GTGK+L A +H Sbjct: 122 RKGMQAGAPPGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHE 181 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S RA PF+ +N AAIP+ L ESELFGHEKGAFTGA+ R GRFE ADGGTLFLDE+G+ Sbjct: 182 RSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGE 241 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 + Q +LLR L F VG V+VDVR+IAAT+++L + G FR+DL++RLNV Sbjct: 242 LAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNV 301 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 I +H PPLRERR D+P L FL A LG L P AAL +PGNVR+L++ Sbjct: 302 IDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHA 361 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 +A G + ++ LP +L A + A L Sbjct: 362 LERAVALARGGPIRLEHLPPDLAGPLPA------------------GEAAPAGEGLARLG 403 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 EA + E+ + AL T GH+ AA LLG R +L +L+ Sbjct: 404 EAVEQFEQQYIRRALEKTGGHRARAAALLGISRKSLWERLR 444 >UniRef50_Q3B305 Two component transcriptional regulator, Fis family n=9 Tax=Chlorobiaceae RepID=Q3B305_PELLD Length = 492 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 179/472 (37%), Positives = 262/472 (55%), Gaps = 12/472 (2%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ V + DDD + R + + G T +NG E +E++ ++PDV+L DI MPG D Sbjct: 24 RKNTVLIADDDETSRRIFSHFVRKMGYTALVVQNGMECIESITEQSPDVILLDINMPGKD 83 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G ++ +K H PVII+TA D+ AV + GA++YL KP +ID ++ +++ Sbjct: 84 GFEVMLHMKTEHIKTPVIIITASHDIPQAVKCIKLGAYEYLTKPLNIDRLEIVMRNSLAE 143 Query: 122 YQEQQQPRNVQLNGPTTDI----IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q + +N++ T DI IG + A++ ++ + ++VLI GESGTGKEL Sbjct: 144 SALQIEVKNLKKELRTRDIFQHIIGRSRAIKASMEQAVQVMETDLNVLILGESGTGKELF 203 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H+ S R PF+++N AAI L +S LFGH KG+FTGA T G FEQAD GT+F Sbjct: 204 AQAIHQGSRRNCGPFVSVNCAAISSTLADSILFGHAKGSFTGAATDHTGFFEQADKGTIF 263 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM D+Q ++LR + + + RVG VD R+I+AT++N ++ +FREDL Sbjct: 264 LDEIGDMEADIQAKVLRAIQERKIRRVGEKHERSVDFRVISATNRNFADAIRSNQFREDL 323 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RL + LPPLRER EDIP LARHFL A +E E A WPGN+ Sbjct: 324 YYRLEEFPLFLPPLRERPEDIPLLARHFLDEFASANNIEKLSFTDEALAGSKEYHWPGNI 383 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N + V G EV L L + + A+ LA A + Sbjct: 384 RELKNAVQRAAVTRKGDEV--DSLRPILKHGNGSTAG------HPASALAGSAAQRSAGH 435 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ S + E ER + A + + G+ + AR+LG GR TL RKL + G+E Sbjct: 436 GPDMQSYSLEEHEREAILKAYKASNGNLTKTARMLGIGRATLYRKLDKFGLE 487 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 178/466 (38%), Positives = 269/466 (57%), Gaps = 19/466 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V +VDDD+S+R VLE AL G T EN + L A+ + D++L D+R+ +G Sbjct: 1 MATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGVDLVLLDVRLGQENG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--S 120 + LL+ ++Q LPVI++TA++D +AV A + GA DY+ KPFD+ E + +VER++ S Sbjct: 61 VDLLRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSLKTS 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 QE+ + ++ G +IIGE+P MQ+VF ++ R++ + I++L+ GESGTGKELVA A Sbjct: 121 RLQEENRWLKKEIQGRYGEIIGESPCMQEVFHLVERVAPTVINILVTGESGTGKELVARA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H SPR P + +N +P++L+ESELFG+ +GAFTGA+ ++G E AD GT FLDE Sbjct: 181 IHAQSPRRDNPLMVINCGGLPENLVESELFGYRRGAFTGADKPKKGLLELADSGTAFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 + ++ Q +LLR + D F +GG + + DVRIIAAT++ ++Q V +G FR+DL++R Sbjct: 241 VAELAPSTQVKLLRCVQDKSFIPLGGASEITTDVRIIAATNRQVDQDVAQGHFRDDLYYR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+ + +HLPPLR+R D+ LA HFL A RE L PE L R +PGNVR+L Sbjct: 301 LSGMIIHLPPLRDRGSDVLLLAEHFLGRACREQKRSLLRLSPEARRKLQRYHFPGNVREL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + G + L + E + P +L G + Sbjct: 361 ENIIERAVALEQGNTITPSSL-------IIYEQDAAADPSGVNRVL----------GGEL 403 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L + E +L A+ T GHK +AA+L+G + + Sbjct: 404 SLEDHLQSEEHKILKAAMDATGGHKSQAAQLVGLNFRQFRYRWDKY 449 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 253/470 (53%), Gaps = 28/470 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+S +R +L L A + NG E L L + DV+L D+ MP +DG Sbjct: 6 KKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMPTLDGP 65 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LK+++ R+ VI+M+A+ +LD AV ++GAFDY+ KPF DE V + +A + Sbjct: 66 GFLKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKAEERLR 125 Query: 124 EQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +++ ++ + ++ M+ ++GR ++ + VL+ GE+GTGKELVA Sbjct: 126 LREENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGKELVAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH+ R PFIA+N + +I+SELFGH +GAFTGAN G F A+GGTLFLD Sbjct: 186 ALHQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++P+ +Q RLLR L + + VG P DVRI+AAT +NL++ + G+FR DLF Sbjct: 246 EIGELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFRSDLFF 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL VI +HLPPLRER+ DI LA HFL A G L PE +L R AWPGNVR+ Sbjct: 306 RLAVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWPGNVRE 365 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + ++ ++ LP E+ G Sbjct: 366 LANFMEKTAIFCRDDKICMEHLPWEIRRHPRDR------------------------GQD 401 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +A +E + AL T G++ +AA+LL L K++E +E Sbjct: 402 MSLKKAVSRIEPEYIRRALSVTGGNRTKAAQLLDISLRNLHYKIREYDLE 451 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 173/476 (36%), Positives = 265/476 (55%), Gaps = 35/476 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALAS-----KTPDVLLSDIRM 57 + + DDD +IR LE L G T NG++ + + D++L D+R+ Sbjct: 1 MKTILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRL 60 Query: 58 PGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117 GMDG +L +K++ P LP+I++TA+ ++ A+ A + GA D+L KP D+D ++++ Sbjct: 61 TGMDGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDK 120 Query: 118 AISHYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 + + + ++G AM++V++ IG ++ S +VLI GESGTG Sbjct: 121 IFEMSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTG 180 Query: 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 KE+VA A+H +S PFIA+ +A+ ++ESELFGHEKGAFTGA + G+FE A G Sbjct: 181 KEMVARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQG 240 Query: 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 GTLFLDEI ++ ++Q +LLR + + +F RVGG +K DVRI+AAT++NL V G F Sbjct: 241 GTLFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGMF 300 Query: 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 R DL++RL V+ + LPPLRER+EDIP L + L+ E G +++ ET + +W Sbjct: 301 RNDLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEHSW 360 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 PGNVR+LENT R +++ G +L + L E + Sbjct: 361 PGNVRELENTLRRAVILSHGNMLLPESLHLE--------------------------EGC 394 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LL + E+ER + L + + K+ AA +LG R TL R++KE G+E Sbjct: 395 DGQERFPLLLKPLHEVEREHIQNVLCYVRNEKKRAAEILGISRPTLDRRIKEYGLE 450 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 187/479 (39%), Positives = 267/479 (55%), Gaps = 40/479 (8%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRM-----P 58 V V DD + + L L GLT T ++ A L L ++ D++L D+ Sbjct: 23 PCVLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYARDTTS 82 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE-- 116 G +G+ LL +I+ + LPV++MTA ++ AV A + GA DY+ KP+D +A + Sbjct: 83 GQEGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLATLRTQ 142 Query: 117 ----RAISH-YQEQQQPRNVQL-NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGES 170 RA+ + +++ ++++ G ++ E+ +MQ V R+I R++ S +VL+ GE Sbjct: 143 LELRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLVTGEH 202 Query: 171 GTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ 230 GTGKE+VA +H S R++ F+A+N + + + ESELFGH KGAFT A + R G FE Sbjct: 203 GTGKEVVARLIHGGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDAKSDRIGCFEL 262 Query: 231 ADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQE 290 ADGGTLFLDEIG+MPL Q +LLRVL G+ + VG +VDVR+++AT+ +L + V E Sbjct: 263 ADGGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATNVDLSRAVAE 322 Query: 291 GKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 G+FREDL +RLN + V LPPLRERREDIP LA HFL R G L E AL Sbjct: 323 GRFREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNVRLSSEALEALLA 382 Query: 351 LAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWA 410 AWPGNVR+LE+ +MA+G EV +DL Sbjct: 383 YAWPGNVRELEHAVERAMLMASGDEVTQEDL---------------------------LL 415 Query: 411 DRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 RA R G L E+ER L+ AL +G+ EAA+ LG R+ L R+L+ G++ Sbjct: 416 KRAGREGMARLEEMTLEEVERYLIERALARHEGNVSEAAKGLGLSRSALYRRLQYYGIK 474 >UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfovibrionales RepID=A1VBP1_DESVV Length = 469 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 166/467 (35%), Positives = 251/467 (53%), Gaps = 9/467 (1%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VDD+ SI +LE+ L+ + + E L T +V++ DIR+P DG+ Sbjct: 7 VLAVDDEPSIGKLLEKELSTPARAVHVAGSARQARERLRRATYEVVVLDIRLPDADGIEF 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 + +++QR+P + VI++T H ++D AV A + GA+DY+ KPF++ E +VERA + Sbjct: 67 MVELRQRYPDMEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQRAFLR 126 Query: 126 QQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + R ++ P +IG + +++V +I +++ + + VLI GESG GKE+ AHA+ Sbjct: 127 NENRALRHAHDRGRPGVTLIGNSQVIKEVRYLIEKVAPTDVPVLITGESGAGKEVAAHAI 186 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 RA PFI N A + K+L SELFGH +G+FTGA R G A+ GTLFLDEI Sbjct: 187 QSLGTRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTLFLDEI 246 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P++VQ LLRVL + + RVG D+R+I AT++ L V+ G+F E L+HR+ Sbjct: 247 GELPMEVQASLLRVLENKTYRRVGEKDHRSCDLRLIFATNRTLAGEVEAGRFHEALYHRI 306 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV + +PPLRER+EDIP LA FL G + + + + L + AWPGNVR+L Sbjct: 307 NVFNIEMPPLRERKEDIPLLAEFFLARLG--NGRDDLRISDKAMSCLMQYAWPGNVRELR 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N ++A + LP +L S Q + + Q Sbjct: 365 NVLERSIILAENNLITEHALPRDL-AGFAGGSVGQSGVTGASGVCGTPGAPGAMGEMQGP 423 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 LS +ER + L ++ AA LG R TL RK++E + Sbjct: 424 LS--LEAMEREHIARILEFYDNNRSLAATALGISRKTLYRKMREYDI 468 >UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZS60_9PLAN Length = 479 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 181/470 (38%), Positives = 288/470 (61%), Gaps = 11/470 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD ++ +++R G+ + T + AEV+ + + DVLL DI +P + GL + Sbjct: 4 ILVVDDDRAVARLVQRCFEGSNVDVLTAQRAAEVIPLIENHAVDVLLLDIMLPEISGLEI 63 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +QI++ LP+I +T D + + A + GA+DYL KP D+ LVERAI + + Sbjct: 64 ARQIRKIDSKLPIIFVTGRDDSETTIEAMKLGAYDYLVKPLDVGMVQELVERAIENRRLM 123 Query: 126 QQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +P + + ++G +P M V++ +GR++ +++VL+ GESG+GKEL+A A Sbjct: 124 HEPVVLTPQQADENETGDLLVGRSPQMLGVYKEVGRVAAQNVNVLVRGESGSGKELIARA 183 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +++HS R PF+A+N AA+ + L+ESELFGHEKGAFTGA++ R G+FEQ +GGT+FLDE Sbjct: 184 IYQHSNRNDQPFLAVNCAALSETLLESELFGHEKGAFTGADSRRIGKFEQCNGGTIFLDE 243 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GDM L +Q ++LR+L D +F R+GG + DVRII+AT+++LE+ + +G FR DLFHR Sbjct: 244 VGDMSLTIQAKVLRLLQDQRFERLGGAETITTDVRIISATNRDLEEMIADGDFRLDLFHR 303 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L + +PPLR+R D+ +L ++FL+ ++LG E L E+ L WPGN+R+L Sbjct: 304 LKSFEIAIPPLRDRDGDLEQLVQYFLKQFNKQLGKEITGLSAESLVRLKSYDWPGNIREL 363 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAES--TSQMQPDSWATLLAQWADRALRSGH 418 + R +MA + + LP E+F +S Q D++ L Q R G Sbjct: 364 QGVLRKSMLMATSTVLAPEWLPPEVFGEAAPMRGDSSGNQDDAFDVFLGQLESR----GS 419 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +++ +E+ +E LL+ L T G++ +AA LLG R +L K++ LG+ Sbjct: 420 EDMYAESLEWMEHRLLSFVLDKTAGNQSKAAVLLGITRGSLRHKMRALGI 469 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 265/470 (56%), Gaps = 33/470 (7%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VV+DD+ +L L G T +G E L + + D++LSD++MP GL Sbjct: 3 ANILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKSGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVERAISHY 122 L ++ +Q I +TA ++ AV+A ++GAFD+L KP D V+RA+ Sbjct: 63 ELFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRALESV 122 Query: 123 QEQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + ++ ++ + P ++I AM V ++I ++ S+ +VLI+GESGTGKELVA Sbjct: 123 ERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKELVA 182 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H S R A FI LN AAIP++L+ESELFGHEKGAFTGA R+G+FE A+GGT+FL Sbjct: 183 RMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGTIFL 242 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG+MP +Q +LLRVL + F RVGG ++ +VR+IAAT+++L + V E +FR+DLF Sbjct: 243 DEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRDDLF 302 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV + +PPLR R + + LAR+F A + G + K ++PE + WPGN+R Sbjct: 303 YRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPGNIR 362 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+N ++A +E+ +LP + Sbjct: 363 ELQNVIERGVILAR-EELTAPELPAMIAGKETEGGPKVG--------------------- 400 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ER + AL++ +G+++ AA LG + TL +LKELG+ Sbjct: 401 ------ILKDIERNCILEALKNNRGNRRMAAETLGISKRTLQYRLKELGL 444 >UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q480_9BACT Length = 457 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 168/472 (35%), Positives = 270/472 (57%), Gaps = 28/472 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG- 59 M + V +V+D+ R +L L G+ ++G E E + + V++SDIR+ G Sbjct: 1 MDKARVLIVEDEDIYRKILCNTLREHGIEVQATDSGEEAWELIKQQRFPVIISDIRLSGN 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 + G+ LL+ K+ + ++++TA +++ AV A + GAF Y+ KPF++++ +A ++R + Sbjct: 61 ISGMDLLRDAKELY-DPSILMITAFGEIEMAVEAMRLGAFSYITKPFEVEDILANLDRMM 119 Query: 120 SHYQ---EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + P NV+ T IIG + M D+ I + +RS ++LI GESGTGKEL Sbjct: 120 LQQRSISDHLLPSNVEELSQRTGIIGNSKKMCDLVNIALKAARSDATILITGESGTGKEL 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A++ +S R F+A+N A + + +ES LFGH KG++TGA + G FE+ADGGTL Sbjct: 180 IAKAIYMNSSRKNKEFVAINCATLTDEFLESALFGHVKGSYTGAMKDKIGLFEKADGGTL 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 F+DE+GD +Q ++LRVL +G+F +G K +VRIIAAT+++L Q V++ +FRED Sbjct: 240 FMDEVGDTSKSIQAKILRVLQEGEFIPLGSTDTKKANVRIIAATNKDLLQSVEKNEFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNVI + +PPLRER+ DIP L HF++ +L + + PE E L WPGN Sbjct: 300 LYYRLNVINIAMPPLRERKSDIPLLINHFIKKNNVKLNKKVIRIAPEIEEILMDYDWPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN V+ +G ++ + LPG + + P + Sbjct: 360 VRELENVIERTMVLCSGNKLAKKHLPGCVLPQKGDIPPITIAPGTSW------------- 406 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E E+ L+ L+ T+G+KQEAA++LG + ++KE G+ Sbjct: 407 ----------KEAEKELIMKTLQLTRGNKQEAAKMLGISLRKIEYRVKEWGI 448 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 189/468 (40%), Positives = 271/468 (57%), Gaps = 3/468 (0%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG-MD 61 V +VDD+ +IR ++ L+ G +G+ L + PDV L D+ MPG +D Sbjct: 1 MPSVLIVDDEPNIRRMVGALLSSEGYDVRDASDGSTGLALAETSEPDVALIDLMMPGDLD 60 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL+++++R P +PV++M+ + L AV A + GAF +L KP + + + A Sbjct: 61 GLGLLEKLRERRPDMPVVMMSGRAALTDAVRATRLGAFTFLEKPLTPEGVLLALASAFEL 120 Query: 122 YQEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q ++ ++ + G + ++IG++PAM+DV ++ R+ + VLI GESGTGKEL A A Sbjct: 121 RQARRAAAALREDLGISGEMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R PF+ +N AAIP+DL+ESE+FGHE+GAFTGA R GRFE A GTLFLDE Sbjct: 181 LHVSSARRDRPFVRVNCAAIPRDLVESEMFGHERGAFTGATERRIGRFELAHTGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GD+ + Q +LLR + + RVGG P+KVDVRI+AAT+++L + V +G FREDLF R Sbjct: 241 VGDLGAEAQAKLLRAIEAREIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI +HLPPLR+R D+P L RHF G H AL+ WPGN+R+L Sbjct: 301 LNVIPIHLPPLRDRPGDLPALVRHFSARHRTRTGRPLVQWHESALGALSAYRWPGNIREL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N L ++ AG EV ++ L E+ + P S + S Sbjct: 361 ANVVERLAILHAGSEVTRTEVRQVLPETAALPGATSAVP-SGTEAGTEVDTPDPASAAHM 419 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 LS+A ER L++ AL + G+ EAAR L R L R+++ LG+ Sbjct: 420 PLSDALDAYERRLISAALAQSDGNVAEAARRLQTDRPNLYRRMRRLGL 467 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 173/471 (36%), Positives = 262/471 (55%), Gaps = 26/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ A+ G C +G L+ + ++ DV+++D+ M G Sbjct: 5 NTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMHDFSG 64 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +LK K++ P +I++T + ++ AV A Q+GA +L KP +I+ A + + + Sbjct: 65 MEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKLVEKQ 124 Query: 123 QEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + T IIG + +MQ V ++ ++S ++ +VLI GESGTGKEL+A Sbjct: 125 NLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGKELIA 184 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H +S R P + LN AAIP++++ESELFGHEKG+FTGA R+G+FE A GT FL Sbjct: 185 KTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRGTFFL 244 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL Q +LLRVL DG R+G ++VDVR+IAAT+Q L ++EGKFREDL+ Sbjct: 245 DEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFREDLY 304 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNVIR+ LPPLRER EDIP L F++ +R E + PE L R WPGN+R Sbjct: 305 FRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWPGNIR 364 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+N + V+ + + ++DLP + + + S H Sbjct: 365 ELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVS----------------------H 402 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + + E L+ L G+++EAAR+LG G TL RKL ++ Sbjct: 403 GLMAGMTMEDAEIELIKCTLASVGGNREEAARMLGIGERTLYRKLDLYRLK 453 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 170/470 (36%), Positives = 254/470 (54%), Gaps = 25/470 (5%) Query: 1 MQRGI-VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 MQ + VVDDD I V+E L+ +G E L+ L + D++++D+RMPG Sbjct: 1 MQTKRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 M G+ L +I+ H LPVI +TA+ + AV A + GA DYL KPFD + V V+ + Sbjct: 61 MGGMDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEIL 120 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 P ++ G++ +M+++ ++ R++ S ++VLI GESG GKE VA Sbjct: 121 -RKPVPHLPAQETISPKHEFWGGKSASMRELQDLVERIAPSDVNVLILGESGVGKERVAR 179 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H+ PR PF+ ++ + P L+ESELFGH +GAFT A ++G E A+ GTLFLD Sbjct: 180 LIHQKGPRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLD 239 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ ++Q RLLR L D + R+G + V+ R+IAAT+ +L + V+ G FREDL++ Sbjct: 240 EIGNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYY 299 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V+ + +PPLRERREDIP LA+HFLQ + L ET L+ WPGNVR+ Sbjct: 300 RLRVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETIRWLSEYPWPGNVRE 359 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N V+ + DL L+ L+ Sbjct: 360 LKNALEAGAVLCRESVLRPSDL-----------------------HLSGLPHAPLKPHVS 396 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 S + E ER + AL+ +++AA+LLG R + K+K+ G+E Sbjct: 397 VGDSLSLEESERNAIVRALQQAGWVQKDAAQLLGISRRAINYKIKKYGIE 446 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 183/474 (38%), Positives = 262/474 (55%), Gaps = 15/474 (3%) Query: 5 IVWVVDDDSSIRWVLERALAG------AGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 + +VDDD S+ L+ T + A L A P V++ D+ +P Sbjct: 3 TLLIVDDDVSLLETLKMHFEEIEQDGQPRYQVATATSAAAGLRAAQEAMPSVVILDMMLP 62 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVER 117 GL +++++K +I++TA+ D++ + A + GAFDY+ KPF D +VER Sbjct: 63 DRTGLEIIEEMKGLCGDARIILVTAYHDMETTIRAMKAGAFDYIHKPFPDPAALDLVVER 122 Query: 118 AISHYQEQQQPRNVQLN---GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 A+ + Q ++ V DI+G +P MQ + + IG+++ S +VLI GESGTGK Sbjct: 123 ALEYRQLSRRADEVHRENAAARLGDIVGTSPLMQQLVKEIGKVTGSHATVLITGESGTGK 182 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 EL+A +H +S PFI +N +AI L+ESELFGHEKGAFTGA + G+FE A+ G Sbjct: 183 ELIARVIHNYSYDEPRPFIGINCSAIVDTLLESELFGHEKGAFTGATAGKPGKFELAEDG 242 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 T+FLDEIGDM L +Q +LLRVL + +F RVGG +K+ R+IAATH+ L + V+ G+FR Sbjct: 243 TVFLDEIGDMSLMLQAKLLRVLQEREFERVGGVKRIKLRARVIAATHRALVEEVEAGRFR 302 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL+ RL VI + +PPLRERREDIP L +H L+ ++ + E LTRL W Sbjct: 303 EDLYQRLKVITLQIPPLRERREDIPPLVKHLLERINEKVHKRVTRVPGEVMERLTRLPWR 362 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+LEN V+A G + DLP E A+ + A Sbjct: 363 GNVRELENVLTRAVVLAPGDVLRGDDLPALESPLPSPEPGRATSAHHTASAM-----FAA 417 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + L E ER L+ A+ T+GHK ++LG R TL RKL++ G+ Sbjct: 418 PAEDDASLIPTLEEAERQLIARAMTVTKGHKGRTCQILGISRPTLERKLQKYGL 471 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 177/459 (38%), Positives = 251/459 (54%), Gaps = 15/459 (3%) Query: 9 VDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQ 68 V+D +S+ + L G+ G + +++L + PD++L D+R+P M G+ +L Sbjct: 2 VEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHA 61 Query: 69 IKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP 128 +K HP +P+I MTAH +D AV A + G+ D+L KP + D V AI + + Sbjct: 62 VKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 129 RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA 188 + + IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S R Sbjct: 122 ADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRG 181 Query: 189 KAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDV 248 PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M LD+ Sbjct: 182 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL 241 Query: 249 QTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHL 308 QT+LLR + G F +VG VDVR + AT+++ + VQEG+FREDL++RL VI +HL Sbjct: 242 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 301 Query: 309 PPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLT 368 PPLRER ED+ +A L + E G WPGNVRQL+N R + Sbjct: 302 PPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVV 361 Query: 369 VMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPE 428 V+ G+E+ ++ LP L + + + Q ++ R L+ Sbjct: 362 VLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISV---------RDICPLWLT----- 407 Query: 429 LERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+ + A++ G+ AA L +T+ RKL+ Sbjct: 408 -EKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWN 445 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 170/466 (36%), Positives = 259/466 (55%), Gaps = 29/466 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V +VDD+ + VL L G + + AE +AL+ + D +++D++MPG DG+ Sbjct: 7 GKVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGI 66 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L+ + + +P +P+I +TA+ +D+AV A +GAF Y KP D + ++ RA+ Sbjct: 67 QLMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQRS 126 Query: 124 EQQQPRNVQLN---GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ ++ G I+G P M +F + + S SVLI GE+GTGKEL+A + Sbjct: 127 LKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARS 186 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R PF+A+N AA+P++LIESELFG+EKGAF+GA + R GRFE+A GT+FLDE Sbjct: 187 LHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIFLDE 246 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ + +Q +LLRVL + + R+G +KV+ R+I++T++N+ + G FREDLF+R Sbjct: 247 IGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDLFYR 306 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV++V +PPLR+RREDIP LA ++ G E WPGN+RQL Sbjct: 307 LNVVQVQVPPLRDRREDIPLLAAELVREYGAREGK-VLRFDDEVMQVFLNYDWPGNIRQL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N V+A + ++LP EL V + Q Sbjct: 366 GNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQV---------------------- 403 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 ELE + AL + G+K AA++LG R L ++L E+ Sbjct: 404 ---RTLRELEEAAILAALEESGGNKSHAAKMLGISRKALYKRLGEM 446 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 173/464 (37%), Positives = 265/464 (57%), Gaps = 25/464 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VV+DD S+R + L AG C + G L+ L + +++SD+RM MDG+ L Sbjct: 8 ILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMMPMDGITL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+I+ R P LPV++MTA++++D AV A + GA D+L KPF+ +A + + Sbjct: 68 LKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAHINK-------- 119 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + + + ++ PA +++F + R++++ +VL+ GESG GKE+VA +HR S Sbjct: 120 ---YELPASDDGSGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVARFIHRQS 176 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PF+A+N AAIP L+E+ LFG+EKGAFTGA + G+FEQA GTL LDE+ +MP Sbjct: 177 ARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLDEVTEMP 236 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 + +Q +LLRVL + + RVGG PV +++RIIA +++++ + V +G FREDL++RLNV Sbjct: 237 MGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYYRLNVFP 296 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 V +P LR+RR DI +ARHF+ G L P EAAL +WPGNVR+LEN + Sbjct: 297 VGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRELENVIQ 356 Query: 366 WLTVMAAGQEVLIQDL---PGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 +MA G + + L P E+ V + + P + L + Sbjct: 357 RALIMATGSTIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLT-----------DTDKK 405 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + +LER + L G +++A LG TL KL++ Sbjct: 406 VDNMKDLEREHILRTLAEVGGSRKKAIERLGISERTLRYKLQQY 449 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 162/472 (34%), Positives = 261/472 (55%), Gaps = 34/472 (7%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + +V+D++ R L + AG +G E L+ + + +++L+D+ +PGM+ Sbjct: 3 SHANILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL+ IK+ P VI++T H+ +D AV A Q+GA Y+ KP ++DE A V A+ Sbjct: 63 GIELLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNALER 122 Query: 122 YQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ ++G++ + + + I +L+ +VLI GE+GTGKEL+ Sbjct: 123 QALSVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H SPR++ F+A+N +L++ ELFGHE+ AFTGA ++G E A+GGT+F Sbjct: 183 ARGIHMLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQKGILEVANGGTVF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 DE+ ++PL++Q +LLRVL + F RVGG + VD+R+++AT+ +L++ V+ G FR+DL Sbjct: 243 FDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFRQDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNV+ + PPLR+ REDIP L HFL+ E + ET L ++PGNV Sbjct: 303 FYRLNVVTLSAPPLRDHREDIPVLIGHFLEKHRTET-QSIDTISQETLDILMNYSFPGNV 361 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN + +A G LP E+ R+ Sbjct: 362 RELENISQRALALARGTVFSPDLLPEEI-----------------------------RNI 392 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +N E+ER + + T G+K +AA++LG R +L RK+K LG+E Sbjct: 393 DRNKPLRTLEEVERDHIEKVMLATNGNKTQAAKILGIDRVSLWRKMKRLGLE 444 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 184/469 (39%), Positives = 257/469 (54%), Gaps = 36/469 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + V VVDD+ +R L RALA G T E+ E E LA+ D+++ DI +PG G Sbjct: 12 QQSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPGKAG 71 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L+ + VI++TA +D+ A+ A + GA D++ KPF ID+ + + R+ Sbjct: 72 IEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRSTERA 131 Query: 123 QEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ ++ + +IG +PA+ + +I+ R++ + +VLI GESG GKE+V Sbjct: 132 RLARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGKEVV 191 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH+ SPRA+ PF+A+N AAI +LIESELFGH KGAFTGA R G F A GGTLF Sbjct: 192 ARALHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGGTLF 251 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++PL +Q+RLLRVL + + VG V VDVR++AAT+++L V +FREDL Sbjct: 252 LDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFREDL 311 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RL VI + +PPLRER ED+P LA F+Q A +LG+ L+ PE A L WPGNV Sbjct: 312 FYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWPGNV 371 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N + D P LA A Sbjct: 372 RELRNFVERSLLF--------GDFP-----------------------LASLAGAVAPPP 400 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + E+E+ + L G+K AA LLG R TL RK E Sbjct: 401 PASAAPLLLEEVEKRHILAVLDQCGGNKTRAAELLGVSRKTLERKCAEW 449 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 173/463 (37%), Positives = 266/463 (57%), Gaps = 7/463 (1%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +VDD+ I +LE LA L+ N A+ E L PD+ L+D+++P +G++L++ Sbjct: 2 LVDDEPDILRLLEITLARMNLSTLRATNLADAYELLRQHEPDLCLTDMKLPDGNGMSLIE 61 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 I+ +P +PV ++TAH ++AA+ A + GAFD++ KP +++ +V A+ Sbjct: 62 HIQTHYPTIPVAMITAHGSVEAAIDALKLGAFDFVSKPIALEKLRDIVNHALQVK----- 116 Query: 128 PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187 ++G+ PAM+ + I +++RS V I+GESG GKE+VA +H+ SPR Sbjct: 117 -DAGDDAASDQLLVGDTPAMERLRLQIQKVARSQAPVHIHGESGVGKEVVARLIHQLSPR 175 Query: 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD 247 A+ PFIA+N AIP DL+ESELFGH+KG+FTGA + G F+ A GGTL LDE+ D+PL+ Sbjct: 176 AEQPFIAVNCGAIPADLVESELFGHKKGSFTGAAADKPGLFQAAAGGTLLLDEVADLPLN 235 Query: 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 VQ +LLRV+ + VG V DVR+++ATH++L V++G FR+DLF+R+NVI + Sbjct: 236 VQVKLLRVIQEKAVRPVGAQQEVPTDVRLLSATHKDLSLAVRDGHFRDDLFYRINVIAID 295 Query: 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWL 367 +P LR+RREDIP LA H LQ A + G +A + L +PGNVR+LEN Sbjct: 296 VPSLRKRREDIPLLATHLLQRIAMDNGSDAINIDTAALTKLCDYDFPGNVRELENILARA 355 Query: 368 TVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR-SGHQNLLSEAQ 426 +A G E+ I D+ + ++ +S+ + S L Sbjct: 356 HALADGGELTIDDIQFQTMGASEITEHHAKSDESYPEEPPHVPSGRIDLSDVNGDLESFL 415 Query: 427 PELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER +L A+ + +K AA+ LG +L +LK+LG+E Sbjct: 416 NTIEREVLDQAMLKHRWNKTAAAKALGISFRSLRYRLKKLGLE 458 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 178/467 (38%), Positives = 263/467 (56%), Gaps = 34/467 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + V+DDD+ IR +L + L + + ++GA + EA+ P+++L D ++P G Sbjct: 2 RANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDATG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL IK+ P VI++T H+ D AV A ++GAF + KPFD + + L++RA+ Sbjct: 62 LDLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRALEIR 121 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 +++ T + I + M++V R + R++ S +S+LI GESGTGKE++A +H Sbjct: 122 -------SLREAVSTGNAIFQCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIH 174 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA P I +N AA+P++LIESELFG KGAFTGA++ R+G F QA+GGTL LDE+ Sbjct: 175 SSSHRASGPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELS 234 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +MP+D Q++LLRVL + + VGG K D RIIAAT++ E+ +++GK REDLF+R++ Sbjct: 235 EMPIDTQSKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRIS 294 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 + VHLPPLRERREDI LA FL+ + + + PE L WPGNVRQL+N Sbjct: 295 AVSVHLPPLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQN 354 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + ++ G+ V DL + Sbjct: 355 EVQRAVLLCEGKLVDAPDL---------------------------SITAPANESTGDTS 387 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER + L+ T G+K E A+ LG GR TL K+K G+E Sbjct: 388 YTLLEGVERNTIVQMLKETGGNKLETAKRLGIGRQTLYNKIKAYGIE 434 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 203/475 (42%), Positives = 290/475 (61%), Gaps = 15/475 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPGMDG 62 + V+DDD+ IR+ L R L+ G T NG + + A+ PD++L D+RM GM G Sbjct: 8 ASILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDVRMSGMGG 67 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L+ I+ +P VI+MTA A+ A + GAFDY+ KPFD + +AL + A+ Sbjct: 68 IEALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALADAALKTR 127 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + + + I+G +P MQ+VF+IIG+++ S ++V+I GESGTGKELVA Sbjct: 128 ADLRAVSDYKPTINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESGTGKELVA 187 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ++ +HS R+ PFIA+N AAIP +LIESELFGHEKG+FTGA R G+FE DGGT+FL Sbjct: 188 RSIWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELCDGGTIFL 247 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM L QT++LRVL G+ RVGG ++VDVR++AAT+++LE V+ FREDL+ Sbjct: 248 DEIGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAKTFREDLY 307 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+R+ +PPLRER EDIP++ LQ ++ A + PE AALTR +WPGNVR Sbjct: 308 YRLNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRHSWPGNVR 367 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE-------STSQMQPDSWATLLAQWAD 411 +LEN V+A G+ +L +DLP EL + S+ + T A + Sbjct: 368 ELENVIYRSAVIAQGEAILEKDLPAELRTGLTEPVAAAESGAASERSAVTTRTEPALTRE 427 Query: 412 RALRSGHQNLLSE---AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 RAL + +E P LER L+ A+ G +AA+ LG + L ++L Sbjct: 428 RALDFVFASYAAEDEPLLPRLERELIDRAMTAAAGDAAKAAKQLGLTKAALQKRL 482 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 183/500 (36%), Positives = 269/500 (53%), Gaps = 34/500 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT--PDVLLSDIRMPGMD 61 + V+DDD R +L + G +NG LE + K +V+L D+ MPGM+ Sbjct: 41 AHILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELMQRKGGIINVILLDLLMPGMN 100 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G + L+ + +R PVI+ T ++ V A Q GAFD+L KP + + A+ Sbjct: 101 GHSFLEALAERGVDTPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKM 160 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + + DI+ +PAM V + R ++S+I V++ GESG GKE+V Sbjct: 161 ASRDGKVKTARRPRGGSVGFDDIVSASPAMIRVIDLARRAAQSNIPVVLEGESGVGKEMV 220 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+ S RA PF+ +N AIP +L+ES LFGHEKGAFTGA+ G+F ADGGTLF Sbjct: 221 ARAIQAASDRATKPFVTVNCGAIPGNLVESILFGHEKGAFTGASEKHSGKFVDADGGTLF 280 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGD+PL+VQ +LLR + G+ VG P KV+VR+I+AT+++L V+EG+FREDL Sbjct: 281 LDEIGDLPLEVQVKLLRAVQQGEIETVGARQPQKVNVRLISATNKDLINEVREGRFREDL 340 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK-LLHPETEAALTRLAWPGN 356 ++RLNV + +P LR R+EDIP L R F++ A E ++ + + A LT WPGN Sbjct: 341 YYRLNVFPITIPALRRRKEDIPVLVRAFVERFAAEQRLDQRLTVSNGAMALLTSYDWPGN 400 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTV-------------AESTSQMQPDSWA 403 +RQLEN V+A G E+ ++D P + + PD A Sbjct: 401 IRQLENAIFRAVVLAEGHELTVRDFPQVATQIPGYIVADRTGLSWGDGGPEGRTAPDRPA 460 Query: 404 TLLA--------------QWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAA 449 + A + + A+ S + E+E L+ AL+ +G + A Sbjct: 461 AVTADAGALETAPTDQRDERIENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQVA 520 Query: 450 RLLGWGRNTLTRKLKELGME 469 R LG GR+TL RKLK+ G++ Sbjct: 521 RKLGIGRSTLYRKLKDYGID 540 >UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=17 Tax=Acinetobacter RepID=B0VDC3_ACIBY Length = 473 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 259/468 (55%), Gaps = 5/468 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 Q+ +V +VDD+ + +++ LA G+ + + D L+D+ +P Sbjct: 4 QQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGS 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L+K + Q + P+ ++TA+ ++D A++A + GAFD++ KP + L+++A++ Sbjct: 64 GIDLVKHVSQNYTNTPIAVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNR 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + + +IG + +Q + I +++RS V + GESGTGKE+VA+ + Sbjct: 124 QK--VEHDAAENALENKLLIGRSLPIQQLRIAIKKIARSQAPVFVTGESGTGKEVVANLV 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR S R++ PFIA+N AIP +L+ESELFGH+KG+FTGA +QG A GG+LFLDEI Sbjct: 182 HRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++PL +Q +LLR + + + VG + VD R+I+A+HQ+L+ V++GKFR+DLF R+ Sbjct: 242 AELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRI 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +V+ + LPPLRER ED+ LA HF+Q E K L E L + +PGNVR+L Sbjct: 302 HVMDLILPPLRERGEDVLLLANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELR 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N ++ + I L + ++ + T+ A + L S Sbjct: 362 NMIERAITLSEDATIDISHLHPAPLRANISNPFVSATQNIQTTVAAPQVVKKLPSEG--- 418 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +E+ +L AL T ++ AA+ LG +L +LK+ G++ Sbjct: 419 LERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLD 466 >UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q250F7_DESHY Length = 456 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 263/469 (56%), Gaps = 21/469 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +V+D+ +L++ L + + L+ L + DV+L D R+P +GL+ Sbjct: 2 KLLIVEDEVDFATLLKQRLTRKKINIDLAHTIEQALDWLGKVSYDVILLDQRLPDGEGLS 61 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL +K+ P + V+++T H L+ A+ + +QGA+DYL KP + + + +A + Sbjct: 62 LLTHVKEADPFVEVVVLTGHGSLETAIQSIKQGAYDYLTKPCNTTKLEFTLTQAYEKKRL 121 Query: 125 QQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +Q ++ + IIG++ ++ + +++ ++ S ++L+ GESG+GKEL+A + Sbjct: 122 AEQAAGLSEALRRQTGSEPIIGQSSEIKGLMQMVEKVKDSEATILVLGESGSGKELIARS 181 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R PF ALN AA+P L+ESELFGHEKGAFTGA ++ G E ADGGTLFLDE Sbjct: 182 LHFWSARKDKPFQALNCAALPNQLVESELFGHEKGAFTGAAGVKMGLIEIADGGTLFLDE 241 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 I +M LD+Q +LLR+L G+++RVG KV +R++AAT++ LEQ V G+FREDL+HR Sbjct: 242 IAEMDLDIQAKLLRLLEYGEYFRVGATRSRKVKLRVVAATNKRLEQEVAAGRFREDLYHR 301 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+++ +PPLR R+ DIP LA + L + K+L PE L +PGNVR+L Sbjct: 302 LNVVQIEVPPLRNRKADIPLLADYLLAQKCPQNN--PKVLSPEALEVLLSYDFPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N +++ G + + L S ++ ++ +W D L Sbjct: 360 ANILERGCLLSYGPTIEAEHLFQPQMGKRTPVSKKGLEEEA-----PRWGDTDL------ 408 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ER + L+ +K +AA+ L G TL RK+KE G+E Sbjct: 409 ----SLENCERQHILRVLKMAGENKTKAAQELKIGLKTLYRKVKEYGIE 453 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 161/466 (34%), Positives = 265/466 (56%), Gaps = 30/466 (6%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +++D+ S+ ++ L + T NG E L+ L+ K DVL++DIRMPGM G + Sbjct: 3 ILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGNEV 62 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +++ + +P +PVII+TAH ++ AV+A ++GA+DYL KPF+ +E + +++A+ + + Sbjct: 63 MEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISRMR 122 Query: 126 QQPRNVQ---LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 ++ ++ ++G++ A + + ++ + VL+ GESGTGKEL+A +H Sbjct: 123 RENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQVH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA PFI +N AA+P+ L ESELFGH+KG+FT A+ +G+ +A+GGTLFLDEIG Sbjct: 183 SKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDEIG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++P +Q +LLR L + + VG P+KVDVR++AAT+++L+Q ++G+FR+DLF+RLN Sbjct: 243 ELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYRLN 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V V +PPL +RREDI L F + + L +W GN+R+LEN Sbjct: 303 VFPVEVPPLSKRREDIKDLVELFSAKYGARI-----TFSEKAMEKLINYSWTGNIRELEN 357 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 T L ++ E+ LP E + + + D + N Sbjct: 358 TIYRLCILQGKGEITEDKLPAE-----------------FCSNMETCLDMHMPDKELN-- 398 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELE+ ++ AL G+K AA+ L R+ L +L++ + Sbjct: 399 ---LEELEKNIIIKALHKFDGNKSRAAKYLCIPRHVLLYRLEKYEI 441 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 166/468 (35%), Positives = 249/468 (53%), Gaps = 23/468 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V +++D+ S R +LE L G T +G E L+A K+ DV L DIR+PGMDG+ Sbjct: 10 HVLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPGMDGIQ 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L+ ++Q V++MT H ++ A+ A +QGA+ YL KP D+ E ++ +A+ + Sbjct: 70 VLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKALEKRRL 129 Query: 125 QQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + R + +I+G +PA+ V + + + I VLI GESGTGKEL+A A Sbjct: 130 ADRVEGLNRALDRQTGEPEIVGNSPALLKVIDLTRKAASWDIPVLITGESGTGKELIAKA 189 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R P+IA+N +P +L+ESELFGHEKGAF+GA R G E A GTLFLDE Sbjct: 190 LHHWSNRKGKPWIAINCGTLPSNLLESELFGHEKGAFSGAVASRVGLVEAAHEGTLFLDE 249 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ + +Q +LLR L G++ R+G K VR++AAT++NLE+ + G+FREDL++R Sbjct: 250 IGELEVGLQAKLLRFLESGEYRRIGNNRLFKSKVRVVAATNKNLEEAIAAGQFREDLYYR 309 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+ + + LPPLRERR DIP L ++FL+ R + P L +PGNVR+L Sbjct: 310 LSGMVLRLPPLRERRGDIPLLVQYFLK---RRYPHRQPPIDPSVWERLEAYRFPGNVREL 366 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 + ++ G + G + + + ++ Sbjct: 367 AHMVDRACMLYDGGMLSWHHFVGFCDDGVDRSRSHKPADSAFVYPPGMP----------- 415 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ R + L G+K AA LG G TL R L+E + Sbjct: 416 -----LEEVRRRHILATLAMVGGNKAVAAEKLGIGLRTLYRYLEEWNL 458 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 188/470 (40%), Positives = 265/470 (56%), Gaps = 27/470 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+ L R L G + F N L+ + S + DVL+SD+RMP MDG+ Sbjct: 3 SHIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGM 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---- 119 L+ ++K R P + VI++T ++ LD AV A ++GAF YL KPF D V +A+ Sbjct: 63 ELMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHLLS 122 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + N IIG+ +++V IIG++ + +VLI G+SG+GKELVA Sbjct: 123 ARRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S R+ PF+A N A+ + LI++ELFGHEKGAFTGA + G E A GGTLFLD Sbjct: 183 AIHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MP +Q +LLRVL +G+ RVGG PV VDVRI++AT +++ V EG FR+DL+ Sbjct: 243 EIGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYF 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R+NV+ + LP L ERREDIP LA H L R+ G + + + A L+ A+PGNVR+ Sbjct: 303 RINVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN + G+ + DLP +L E + PD LA Sbjct: 363 LENILERAVAICQGEIIRECDLPPDLV---ALELQAYRPPDETFMTLA------------ 407 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ELER + L+ T G + A +LG R +L RK+K+ +E Sbjct: 408 --------ELERDYMAHLLKITGGARSRTAEILGIDRASLWRKMKKYDLE 449 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 169/472 (35%), Positives = 275/472 (58%), Gaps = 15/472 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDD+ +I + L+ G +G E L+ L S D++L DI+ P + Sbjct: 1 MIESRILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHI 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ +LK++K++ P L VIIMT + ++ AV A + GAFD++ KPF ++ V V +A+ Sbjct: 61 NGIDILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALE 120 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + ++ +++ ++IIGE ++ +F I R+S +VL++GESGTGKEL Sbjct: 121 SIKLVKENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 A A+H S RA F+A++ + ++ESELFGH KGAFTGA T +G F A GTL Sbjct: 181 FAKAIHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE+G++ LD+Q +LLRVL G++ VG K R++AAT++NL Q ++EG FRED Sbjct: 241 FLDEVGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV + +PPLRERR+D+P++A HFL++ R+ + + +AL WPGN Sbjct: 301 LFYRLNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQL+N L +M +++ ++L L +++P + + + L+ Sbjct: 361 VRQLKNVVERLVIMCDKEQLDHRELMDNL----------EIKPVALVRDIPLTLEE-LKR 409 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ L ++ +ER L AL +G+ +AA+ +G R+ + +K+ + Sbjct: 410 ARKDFLEDSFRPVERLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKKNDI 461 >UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGD9_RHOM4 Length = 472 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 177/473 (37%), Positives = 274/473 (57%), Gaps = 26/473 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT--PDVLLSDIRMPGMD 61 + +VDD+ + + ER GL T+ N + +E L + D++++D +MP MD Sbjct: 9 PHILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMPDMD 68 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL I+Q HP L VI++TAH+++ AV A Q GA DY+PKPF +E V V+ A++ Sbjct: 69 GLELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEELVERVQAALAR 128 Query: 122 YQEQQQPRN-------VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 +EQQ+ R + PT + +GE P ++ + ++ R++ + V I GESGTGK Sbjct: 129 RREQQEARAKQPARTSQRRARPTIEYVGEHPMIRRLKEMLPRVAANKAPVFIQGESGTGK 188 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E++A +H+ S RA+ PF+A+N A +P++L+ES LFGH KGAFTGA G FE+A+GG Sbjct: 189 EILARLIHQMSDRAEGPFVAINCANLPRELVESHLFGHRKGAFTGAIEDMTGAFERAEGG 248 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TL LDEI ++ L +Q +LLRVL + + +VG P K+DVR+IA +++NL + + +G+FR Sbjct: 249 TLLLDEITEVDLAIQAKLLRVLQEQEIQKVGSTEPRKIDVRVIATSNRNLSEAIAKGEFR 308 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL+HRL+V + +PPLRER D+P L HF++ G+ K + + WP Sbjct: 309 EDLYHRLSVFPLSVPPLRERMSDVPLLVAHFIKKYCELYGLPPKKVSDALMERFMQYPWP 368 Query: 355 GNVRQLENTCRWLTVM-AAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 GNVRQLEN + ++ A + + ++D+ + F AE Q LL + Sbjct: 369 GNVRQLENYVQRGVLLSAEREVIEVEDVFNDFFAD--AEPARQNASAEKEELLGRV---- 422 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + ++ER ++ AL+ T ++Q AA+ LG T+ KLK Sbjct: 423 ----------QTIEDMEREMILRALKETNNNQQLAAQKLGISARTIRNKLKRY 465 >UniRef50_D2QH48 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=D2QH48_9SPHI Length = 490 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 161/490 (32%), Positives = 259/490 (52%), Gaps = 24/490 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M++ + ++DD++ I +LER L G + + G + L L ++ ++++ D ++P + Sbjct: 1 MEK--ILIIDDNNDICLLLERFLTKQGYKTASVQRGDDGLVLLRKESFELVICDFKLPDI 58 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +L++IK HP VII+T +SD+ AV + GA+DY+ KP DE + ++ A+ Sbjct: 59 DGLEMLRRIKVMHPTTAVIIITGYSDVRVAVQTVKHGAYDYVTKPLYPDEILYTIKGALE 118 Query: 121 HY--------------QEQQQPRNVQLNGPTTD--------IIGEAPAMQDVFRIIGRLS 158 + V+ + I G++ A + + + I ++ Sbjct: 119 RRGQSLSQAKAVTPAAAPAVKSSTVKAASGKSSLTPDGKRFIFGKSRAAEQLQKHIDLIA 178 Query: 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218 + +SV+I GE+GTGKE VA+A+H S RA PF+A++ A+ K+L SELFGH KG+FT Sbjct: 179 PTDMSVIITGETGTGKEFVANAIHLKSKRADKPFVAIDCGALGKELAGSELFGHVKGSFT 238 Query: 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIA 278 GA + + G FE A+GGT+FLDEIG++ D Q +LLRVL + + R+G + VDVRII Sbjct: 239 GAMSDKAGSFEYANGGTIFLDEIGNLSYDNQIKLLRVLQERKIRRIGSNQDIPVDVRIIV 298 Query: 279 ATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK 338 AT+++L + V++GKFRED++HR+ +HL PLRER+ D+ A HFL+ A ++L + Sbjct: 299 ATNEDLREAVRQGKFREDIYHRIAEFEMHLSPLRERKADVMIFAEHFLESANQQLEKDIL 358 Query: 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQ 398 E + L W GN+R+L+N + ++ G + LP E+ + Sbjct: 359 GFEEEAKEKLKEYYWHGNLRELQNVVKRAVLLTQGDYIEADVLPQEIISPQYLTAEDTGT 418 Query: 399 PDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNT 458 + S L ER + L T +K +AA +L R T Sbjct: 419 SSIQINYDPARPGVPVFSQSAANLKSVSENAERAAILKVLEKTGYNKTKAAEVLNIDRKT 478 Query: 459 LTRKLKELGM 468 L KLK + Sbjct: 479 LYNKLKAYDI 488 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 169/463 (36%), Positives = 255/463 (55%), Gaps = 18/463 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDD+ + +LE L G NG E L L + D+++SD+ MPGM G+ Sbjct: 12 SRILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPGMGGI 71 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + K+RHP LP I TA +++AVSA +QGAFDYL KP D +++RA+ + Sbjct: 72 EFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRALEFAR 131 Query: 124 EQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKELVA 178 + ++ + +I+ ++PAM+ V + R++ S +V + GESGTGKE++A Sbjct: 132 LSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKEVLA 191 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S + F+A+N AAIP+ L+ESELFGH +GAFTGA R+G+F A GGT+ L Sbjct: 192 RAIHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGGTVLL 251 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL +Q +LLRVL + F +VG P VD R+I AT+++L Q V++G+FREDL+ Sbjct: 252 DEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFREDLY 311 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 HR+NV+ + +PPLRER EDIP L FL++ + G + + L +WPGNVR Sbjct: 312 HRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWPGNVR 371 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N + +M + + + + L + + S + L Sbjct: 372 ELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAE--------- 422 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461 + + +L +AL+ G+K AA LL R R Sbjct: 423 ----DVSLDAVVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 178/473 (37%), Positives = 269/473 (56%), Gaps = 17/473 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGA-GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 ++ +V VVDDD+ + +L R L T +G L L PDV+ +D+RMPG+ Sbjct: 11 EKPLVLVVDDDAEMLTMLVRLLNRKFDCRVETVASGEAALACLDRNRPDVITTDLRMPGL 70 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG++LL Q+K+ HP + VI+MT + +++ AV + ++GA+D++ KPFD + V +ER + Sbjct: 71 DGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERCLE 130 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q+ R +Q + G + MQ+VF +I +++ ++++VLI GESGTGKEL Sbjct: 131 RVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGKEL 190 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 ALH S RA P + +N A+P +++ESELFG+ KGAFTGA + G F +ADG TL Sbjct: 191 AVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGSTL 250 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIGDMPL +QT+LLRVL + + +G VDVR++A+T+Q+LE ++ +G FRED Sbjct: 251 LLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFRED 310 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L +RLNV+ + +P L ER EDIP LARHFLQ A E P TE L R W GN Sbjct: 311 LLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWKGN 370 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+L+NT + + ++ +G ++ DL + ++ P + Sbjct: 371 IRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLTRLPYNEAK------ 424 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E R LT A+ + G+ AA+ G GR R L+ ++ Sbjct: 425 ------REVLTSFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLRVFDLK 471 >UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIF3_SORC5 Length = 460 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 185/469 (39%), Positives = 272/469 (57%), Gaps = 20/469 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M RG V V+DD+ +I L++AL+ G T E LA ++ D+ L D+ +P Sbjct: 1 MPRGHVLVLDDERAILTTLQKALSLEGYTVDVAGGVGVAEEKLAKRSYDIALFDVSLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL++I+ LPV++M+ H+ +DAAV A + GA D+L KP D + ++E + Sbjct: 61 DGVELLQRIRVSGSELPVVMMSGHATVDAAVRATRLGAIDFLEKPLSTDRLLLVLENTLR 120 Query: 121 HYQEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + ++ G ++IGE+ AM D+ I R ++++ +V + GE GTGKELVA Sbjct: 121 LVRAEAEAKALRTQTGQVGELIGESRAMLDLREQIARAAKATATVFVTGERGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S RA+ P +N AA+P +LIESE+FGHE GAFTGA R+G+FE+A GGTLFLD Sbjct: 181 AIHGASKRARGPLEKMNCAAVPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GDMPL +Q +LLRVL + + RVGG+ +KVDVR++AAT++++E +EG+FR DL+ Sbjct: 241 EVGDMPLAMQAKLLRVLQEREIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYD 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + LPPLR RRED+P+LARHFL +A + L ++PGNVR+ Sbjct: 301 RLNVLPLSLPPLRARREDVPQLARHFLALATQANDRPGMAFTDGGMGVLVAYSFPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N L ++ + + D+ L A +P +LA Sbjct: 361 LRNIIERLVILTPDETIDEGDVKVCLGGQQAAMKGGLFRPGVPFRVLA------------ 408 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E ER +L AL H G AR LG R+ L +K K LG+ Sbjct: 409 -------EEAERAILEEALGHHGGQMAATARGLGLERSHLYKKFKALGL 450 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 173/459 (37%), Positives = 250/459 (54%), Gaps = 15/459 (3%) Query: 9 VDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQ 68 V+D +S+ + L + G + +E++ + PD++L D+R+P M G+ +L Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYA 61 Query: 69 IKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP 128 +K++ P +P++ MTAH +D AV A + GA D+L KP + D V AI + + Sbjct: 62 VKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI-RKASKLKN 120 Query: 129 RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA 188 N IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S R Sbjct: 121 DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRG 180 Query: 189 KAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDV 248 PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M LD+ Sbjct: 181 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL 240 Query: 249 QTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHL 308 QT+LLR + G F +VG VDVR + AT+++ + VQEG+FREDL++RL VI +HL Sbjct: 241 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 300 Query: 309 PPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLT 368 PPLR R +D+ +A L ++E G + L E + WPGNVRQL+N R + Sbjct: 301 PPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVV 360 Query: 369 VMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPE 428 V+ G+E+ + LP L + + + + + + + Sbjct: 361 VLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMT------------- 407 Query: 429 LERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+ + A+ G+ AA L +T+ RKL+ Sbjct: 408 -EKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWN 445 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 171/477 (35%), Positives = 261/477 (54%), Gaps = 32/477 (6%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + VVDD+ + LE L G L + PD++L D+ +P DG Sbjct: 7 RYKIVVVDDERPVLLTLEALLTRHGYEPQLAHTATAGLAIVRKSKPDLVLLDLGLPDADG 66 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +LK++K P LPVII+TA+ L AV + +QGAF ++ KP+ ++E ++L+ RAI Sbjct: 67 LDVLKELKAELPQLPVIILTANDSLSNAVESIKQGAFHFISKPYAVEELLSLITRAIEQR 126 Query: 123 QEQQQPRNVQLNGPTTD-----------IIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 Q Q++ ++ + ++ +M++V ++ R + + +VL+ GESG Sbjct: 127 QLQREAETLREEKQELSRRLAHAERQLAPVAQSRSMRNVRDLVERFAPTDANVLLLGESG 186 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 GKE+VA+ +HR S RA P + LN AA P ++IE ELFG+ KGAFTGA G QA Sbjct: 187 VGKEVVANQVHRLSRRADGPMVKLNCAAFPANMIEGELFGYVKGAFTGAVADFPGMIAQA 246 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTLFLDEI +MP+++QTR LRVL + +F R+G + + R++AAT++N + V+ G Sbjct: 247 TGGTLFLDEIAEMPVELQTRFLRVLQEREFRRLGSTKTIPANFRLVAATNRNAAEAVRNG 306 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 R+DL++RLN ++ +P LRERREDIP L FL A+++G + PE L Sbjct: 307 TLRQDLYYRLNTFQIEIPALRERREDIPALVAVFLARFAKQMGKPEPTIAPEAFDRLLNY 366 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGNVR+L+N + V+A + +++LP E+ P + A A Sbjct: 367 DWPGNVRELQNAIEYSVVLADQALITVKELPREIQ-----------LPAALHEARAANAA 415 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +L + ER + AL G+K++AA +LG R TL K+K G+ Sbjct: 416 ASLN----------LEDQERQAILQALTQAHGNKKKAAAILGIHRPTLYNKMKHHGI 462 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 172/464 (37%), Positives = 257/464 (55%), Gaps = 10/464 (2%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPGMDGLA 64 V VVDD+ + L +L+ G +NG E L + P ++SD+RMP DG + Sbjct: 8 VLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRMPEGDGWS 67 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL+ ++Q P VI+MTA + AV A + GA D++ KPF +E + S + Sbjct: 68 LLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEELRKKL--TASAGRR 125 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 + I+ P + V +++ ++R+ ++LI GESGTGKEL+A +H Sbjct: 126 TPDAGRPVWEAVSRPILTRDPGLIGVLKMLDGVARTPATILIEGESGTGKELLARYVHER 185 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 SPR PF+A+N AA+P+ L+ESELFG+EKGAF+GA + G+FE A GTL LDEIG+M Sbjct: 186 SPRVHRPFVAVNCAALPESLLESELFGYEKGAFSGALARKIGKFELAHTGTLLLDEIGEM 245 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 L +Q +LLRV+ + + RVGG +PV VD+RI+A T++N+++ V+ G+FREDL++RL V Sbjct: 246 DLALQAKLLRVIQEREVDRVGGASPVPVDIRIVATTNRNMKEMVKTGQFREDLYYRLRVF 305 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 V +P LR+R DI LA HF + E +E L E L ++PGNVR+LEN Sbjct: 306 PVRVPALRQRPADIVLLANHFREKFRLEH-MEVGELTAEAVECLRSASFPGNVRELENVI 364 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 +A G + + L E T S++ P ++ +R G + Sbjct: 365 IQAAFLAGGGHIGPEHLLSLGGEETNGLSSAFSTPPKEQKTGDGFSPNGVRPG------Q 418 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+ER L+ L ++ +AA++LG TL KL E GM Sbjct: 419 SVWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLNEYGM 462 >UniRef50_C8PUF3 Nitrogen regulation protein NR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUF3_9GAMM Length = 592 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 235/442 (53%), Positives = 286/442 (64%), Gaps = 39/442 (8%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-------------P 48 IVWV+DDD ++R +LE L +G TF N L P Sbjct: 11 TEPIVWVIDDDQALRMILEDTLTDSGFQVQTFGNAQSAWRLLQDSEQDSQPKSDNSASLP 70 Query: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108 V+++DIRMP M+GL +IKQ +PVIIMTAH+D+ +AV +YQ GAFDYLPKPF++ Sbjct: 71 SVIVTDIRMPMMNGLDFSSKIKQAFAQIPVIIMTAHADVQSAVDSYQSGAFDYLPKPFEL 130 Query: 109 DEAVALVERAI-------------------SHYQEQQQPRNVQLNGP-------TTDIIG 142 D+A+A+V++A S ++ QQP ++ + IIG Sbjct: 131 DDAIAMVKKACLQSQSNQTQKRSKSENYNDSLIRDAQQPPAQKVAVALEKAPTNPSGIIG 190 Query: 143 EAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK 202 ++ AMQ VFR IGRLS ++VLI GESGTGKEL+A ALH HSPR PFIALNMAAIP Sbjct: 191 QSIAMQKVFRAIGRLSHMPMTVLITGESGTGKELIASALHEHSPRKSKPFIALNMAAIPH 250 Query: 203 DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFY 262 DLIE+ELFGHEKGAFTGA T RQGRFEQA GGTLFLDEIGDMPL QTRLLRVLA+G+FY Sbjct: 251 DLIEAELFGHEKGAFTGATTTRQGRFEQAHGGTLFLDEIGDMPLPTQTRLLRVLANGEFY 310 Query: 263 RVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLA 322 RVGG P+KVDVRIIAATHQNLE VQ+GKFREDLF+RLNVIR+ LP LRERREDIP L Sbjct: 311 RVGGLKPIKVDVRIIAATHQNLETLVQQGKFREDLFYRLNVIRLALPSLRERREDIPLLI 370 Query: 323 RHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLP 382 F+Q A+ + K + P L W GNVRQLENTCRWL+VM GQ + DLP Sbjct: 371 DFFMQNIAKSMHTHTKTITPSAMHILQSYPWQGNVRQLENTCRWLSVMTTGQTIQPSDLP 430 Query: 383 GELFESTVAESTSQMQPDSWAT 404 E+ ++ + + + T Sbjct: 431 PEILQAFELQDSKPVTTREPNT 452 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 376 VLIQDLPGELFESTVAESTSQMQPDS---WATLLAQWADRALRSGHQNLLSEAQPELERT 432 V +LP L +TV + Q + W T L WA +AL G ++L A P E+ Sbjct: 490 VHSSELPTPLSATTVIPTLHASQTGATADWITPLQIWAQQALAEGQYDILQTAYPMFEKC 549 Query: 433 LLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 LL AL HT HK +AA LLGWGRNT+TRK ++L Sbjct: 550 LLEVALAHTAQHKGQAADLLGWGRNTVTRKYQQL 583 >UniRef50_Q7UEQ9 NtrC-like response regulator SasR n=1 Tax=Rhodopirellula baltica RepID=Q7UEQ9_RHOBA Length = 491 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 169/478 (35%), Positives = 258/478 (53%), Gaps = 24/478 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +VDD+ R + + G T +GAE + L + DV + DI MPGM GL Sbjct: 12 KILLVDDEDDYRRSCGKFMERMGHTVRLAASGAEAMSFLDREAFDVAVFDIDMPGMSGLE 71 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L++++ + + V+ +T ++A V A Q GA D+L KP + + V+ A Sbjct: 72 LMQRVHEESHDVEVVFLTGKGTIEACVQAMQMGACDFLTKPCSLADLEHRVQLAQQRGHL 131 Query: 125 QQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ + ++ N P+ +IG + AM+++ R+I +++ + VLI GESGTGKE+VA + Sbjct: 132 KKENQQLKAIVHRNRPSPKLIGNSLAMKELSRMIAKVAPTRKPVLIEGESGTGKEVVARS 191 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 + + S A PF+ +N AA+P L+ESELFGH+KG+FTGA + G FE ADGGTLF+DE Sbjct: 192 VQQQSDLADRPFVTINCAALPAQLVESELFGHQKGSFTGATADQPGLFEVADGGTLFIDE 251 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G++P +Q +LLRVL DG R+G + KV VR+IAAT+++L + V+ G+FREDL +R Sbjct: 252 VGELPPALQPKLLRVLEDGSLRRIGCHRERKVKVRLIAATNRDLLEEVKAGRFREDLLYR 311 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 +NV+ ++LPPLR+R DI L HFL E + + WPGNVRQL Sbjct: 312 INVLTLNLPPLRQREGDIELLLHHFLPR--------GWSFDKEALDTMVQYHWPGNVRQL 363 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP-DSWATLLAQWADRALRSGHQ 419 N T++A Q + + DLP EL + P + A+ L Q + Sbjct: 364 INVVERATILADHQVITMDDLPRELSNLPSNSGSFAASPIHADASHLGQDLTCEDPIDEE 423 Query: 420 NLLSEA-----------QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + A +L +T + L G+K + AR LG R L R L+ Sbjct: 424 STAESAPPLMLGDSSLKVDDLIKTHVLKVLEQLGGNKAKTARHLGIHRRKLYRLLERF 481 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 185/473 (39%), Positives = 263/473 (55%), Gaps = 31/473 (6%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDDD + VL R L A + + A L LA + DV+L+D+RMPG+DG Sbjct: 1 MARILVVDDDPLAQRVLVRLLCPA-HDVHAYGDPAAALRHLADRGADVILTDLRMPGLDG 59 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL + ++ P + V ++T HS + +AV A ++GA DYL KPF+ D+ + VERAI Sbjct: 60 IELLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERR 119 Query: 123 QEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + R + + P M + + +R+ +VL+ GE+G GKE+VA Sbjct: 120 RLLARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H+ SPRA F+++N A+P+ L+ESELFGHE+GAFTGA R G FE ADGGT+ L Sbjct: 180 RLVHQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG Q RLLRVL + RVGG P+ VDVR+IAAT+++LE+ EG+FR+DL+ Sbjct: 240 DEIGATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL V+ + +PPLRERRED+ LA HFL+ R + + + PE A L +PGNVR Sbjct: 300 YRLGVVTLVVPPLRERREDVGPLAEHFLRKY-RHVNPAVRGVSPEGLAKLVAYDYPGNVR 358 Query: 359 QLENTCRWLTVMAAGQEVLIQDL---PGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 +LEN ++ G+ + L PG + AE QP+ Sbjct: 359 ELENVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPV------------- 405 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A + ER + L G + EAARLLG ++TL RKLK G+ Sbjct: 406 ---------AIDDAEREHIRRVLERCGGRRGEAARLLGIDKSTLWRKLKRYGL 449 >UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNW8_9PLAN Length = 466 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 167/466 (35%), Positives = 249/466 (53%), Gaps = 22/466 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V VVDD++ R + L G + E L+ + + D +++D++MPGMDGL Sbjct: 11 GNVLVVDDNARARQSIVDVLEMLGHRGAACSSAHEALKRMETIDYDAVVTDLQMPGMDGL 70 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L++QI++R +P++++TAH + AV A + GA DYL KP + D A+V R + Sbjct: 71 ELVRQIRRRDAHIPIVMVTAHGSVSTAVEAMRFGAADYLEKPLNADRLEAVVNRVLESAA 130 Query: 124 E-QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + +IGE+ AMQ V + I +++ + +VLI GESG GKEL+A +H Sbjct: 131 SGDRATVATPGETNQVAMIGESRAMQQVRQQIAQVAPTDETVLIIGESGVGKELIARTIH 190 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA I+LN + L+ESELFGH +GAFT A++ R GRFE A+ GT+ LDEI Sbjct: 191 ESSRRAGRALISLNCPVLSAHLMESELFGHTRGAFTSADSARVGRFELAEQGTILLDEIS 250 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++ L +Q +LLRVL + + RVG ++ DVR++A ++++L V G+FR DL++RL Sbjct: 251 EIDLSLQAKLLRVLQERCYERVGSSETLETDVRVLATSNRDLPGEVTAGRFRRDLYYRLA 310 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ + LPPLR+RR+DIP L +FLQ A L + E L R WPGNVR+LEN Sbjct: 311 VVPIELPPLRQRRDDIPLLVDYFLQQTAARLEKPVFDMRAEALDLLMRHDWPGNVRELEN 370 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V+A ++ D L E+ Sbjct: 371 IVTRACVLAIDGQISADDFSSWLSCEAREETGDSQDAPVGVK------------------ 412 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER L++ L H GH+++ A LG TL+ KL+ G+ Sbjct: 413 ---LDEMERRLISATLEHYDGHREKTAAALGISPRTLSNKLRSYGL 455 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 685 0.0 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 680 0.0 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 679 0.0 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 673 0.0 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 672 0.0 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 670 0.0 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 670 0.0 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 670 0.0 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 667 0.0 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 666 0.0 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 666 0.0 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 666 0.0 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 664 0.0 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 664 0.0 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 663 0.0 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 661 0.0 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 661 0.0 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 661 0.0 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 661 0.0 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 658 0.0 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 656 0.0 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 656 0.0 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 656 0.0 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 656 0.0 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 655 0.0 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 654 0.0 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 653 0.0 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 653 0.0 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 652 0.0 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 652 0.0 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 652 0.0 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 652 0.0 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 651 0.0 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 650 0.0 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 649 0.0 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 648 0.0 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 648 0.0 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 648 0.0 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 648 0.0 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 648 0.0 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 647 0.0 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 647 0.0 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 647 0.0 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 646 0.0 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 646 0.0 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 646 0.0 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 646 0.0 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 645 0.0 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 644 0.0 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 644 0.0 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 644 0.0 UniRef50_Q6ARB9 Probable two-component system response regulator... 643 0.0 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 643 0.0 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 643 0.0 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 642 0.0 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 641 0.0 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 641 0.0 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 640 0.0 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 639 0.0 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 638 0.0 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 638 0.0 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 638 0.0 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 637 0.0 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 636 0.0 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 636 0.0 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 635 e-180 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 634 e-180 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 634 e-180 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 634 e-180 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 633 e-180 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 633 e-180 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 632 e-180 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 632 e-180 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 632 e-180 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 631 e-179 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 631 e-179 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 630 e-179 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 630 e-179 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 630 e-179 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 628 e-178 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 628 e-178 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 627 e-178 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 627 e-178 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 627 e-178 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 626 e-178 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 625 e-178 UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verru... 625 e-177 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 625 e-177 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 625 e-177 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 624 e-177 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 624 e-177 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 624 e-177 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 623 e-177 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 622 e-177 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 622 e-177 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 622 e-176 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 621 e-176 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 621 e-176 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 621 e-176 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 621 e-176 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 621 e-176 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 621 e-176 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 620 e-176 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 619 e-176 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 619 e-176 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 618 e-175 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 618 e-175 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 618 e-175 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 617 e-175 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 617 e-175 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 616 e-175 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 616 e-175 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 615 e-175 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 614 e-174 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 614 e-174 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 613 e-174 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 612 e-174 UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional... 612 e-173 UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing pr... 612 e-173 UniRef50_C1A568 Putative NtrC family two-component response regu... 610 e-173 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 610 e-173 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 609 e-173 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 609 e-172 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 608 e-172 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 608 e-172 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 606 e-172 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 606 e-172 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 606 e-172 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 605 e-171 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteoba... 603 e-171 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 603 e-171 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 603 e-171 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 602 e-171 UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional... 602 e-170 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 602 e-170 UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax... 601 e-170 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=... 600 e-170 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 600 e-170 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 600 e-170 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 599 e-170 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 598 e-169 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 598 e-169 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 598 e-169 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfi... 597 e-169 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 597 e-169 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 596 e-169 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 596 e-169 UniRef50_C1A631 Putative NtrC family two-component response regu... 596 e-169 UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax... 596 e-169 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 596 e-169 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 596 e-169 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 595 e-168 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 595 e-168 UniRef50_Q7UEQ9 NtrC-like response regulator SasR n=1 Tax=Rhodop... 594 e-168 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 594 e-168 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_D2R521 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=... 593 e-168 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 592 e-168 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 592 e-168 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_Q3B305 Two component transcriptional regulator, Fis fam... 592 e-167 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 591 e-167 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 591 e-167 UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulato... 591 e-167 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 591 e-167 UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 591 e-167 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 590 e-167 UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_D2QH48 Two component, sigma54 specific, transcriptional... 590 e-167 Sequences not found previously or not previously below threshold: >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 174/471 (36%), Positives = 270/471 (57%), Gaps = 20/471 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + +VDDD + L L+ AG T +GAE + L + DV+++D+ MPGMD Sbjct: 6 KMEKILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMD 65 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ +LK +++ +++T + +V A + GAFDY+ KP DE + V AI Sbjct: 66 GMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKF 125 Query: 122 YQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +++ + ++ + +G++P +Q VF +I +++ + +VLI GESGTGKEL+ Sbjct: 126 KRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELI 185 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +SPR P + +N AIP++L+ESELFGHEKGAFTGA+ R GRFE A+GGT+F Sbjct: 186 ARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIF 245 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM ++Q +LLRV+ + F R+G + VD+RI+AAT+++L + V++ +FREDL Sbjct: 246 LDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDL 305 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI + +PPLR+R+ DIP L F+ A E K + AL WPGNV Sbjct: 306 YYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNV 365 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN + ++++G + +DLP + E + ++ S Sbjct: 366 RELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPS---------------- 409 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A E E+ L+ AL K +AA+LL R TL K+K + Sbjct: 410 GGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 680 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 200/468 (42%), Positives = 292/468 (62%), Gaps = 16/468 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V VVDD+ S+ L+ L +G + T +G E LE + P +L DIRMP M Sbjct: 1 MAKL-VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +L+ ++++HP +PVI+MTA+SD ++A + GAF+Y+ KP ++DE ++ +E+A + Sbjct: 60 DGIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATT 119 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + ++ +IG +PAMQ+V++ IGR++ S ++VLI GESGTGKELVA A Sbjct: 120 VTEPLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEA 179 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +SPR PF+ ++ AIP++L+ESELFGHEKGAFTGA+T + G+FE ADGGT+FLDE Sbjct: 180 IHYNSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDE 239 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGD+ +Q +LLR L + F RVGG +VDVRIIAAT+++LE+RV+ G FREDL++R Sbjct: 240 IGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYR 299 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + LPPLRER+EDI L +F+ ++ R+ G + L L + WPGNVR+L Sbjct: 300 LNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N C +MA G + + LP L + + + + L Sbjct: 360 RNVCERAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVL--------------- 404 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E E+ER+ + AL +G+K AR LG R TL K+KELG+ Sbjct: 405 PLKEMVAEMERSAILRALEEYRGNKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 469/469 (100%), Positives = 469/469 (100%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM Sbjct: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS Sbjct: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA Sbjct: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE Sbjct: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR Sbjct: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL Sbjct: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN Sbjct: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME Sbjct: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 673 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 180/467 (38%), Positives = 285/467 (61%), Gaps = 21/467 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + V+DD+ + W LE+ L G T G L+ + +TP +++ D++MP MDGL Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L + K P LP+I++TAH +D A+ A + GA DY+ KPFD+DE ++ +A+ Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHL 125 Query: 125 QQQPRNVQLNG--PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 Q++ ++ I+G + A+ DV +I +++ S+ +VL+ GESGTGKE+ A ++H Sbjct: 126 QEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIH 185 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 + S R PF+ +N AA+P+ L+ESELFGHEKGAFTGA + GRFE A+ GTLFLDEI Sbjct: 186 QLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEIT 245 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +MPL +Q +LLRVL + +F RVGG +K+DVR+IAAT+++ + +++G FREDLF+RLN Sbjct: 246 EMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLN 305 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ +HLPPLRER EDIP LA HF++ + + + PE L WPGN+R+L+N Sbjct: 306 VLPIHLPPLRERTEDIPLLAMHFIKKFNP---SQEQRMSPEAMGLLISYEWPGNIRELQN 362 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 ++A G E+ LP E+ + +++ ++ L+ + D + Sbjct: 363 VIERSIILAQGNEIKPHHLPKEI------QKLDEVKNETTHGLIINFPDDGI-------- 408 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E+E+ L+ AL + G++ AA+LLG R+ L + ++ ++ Sbjct: 409 --SFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 185/471 (39%), Positives = 278/471 (59%), Gaps = 18/471 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V +VDD+ + +L+ L G T N + L+ + ++ PD +L DIR+P DG Sbjct: 1 MSKVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + ++ ++KQ +PVI+MTA + A+ A +QGA DYL KP ++DE V V+++I Sbjct: 61 IEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQ 120 Query: 123 QEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + ++ IG++ MQDVF+ IG++ S I+VLI GESGTGKE+V Sbjct: 121 RLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVV 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H +S R+ PFI +N A IP+ L+ESELFGHEKG+FTGA + + G+FE A G +F Sbjct: 181 ARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++PL Q +LLRVL + +F RVGG ++VDVRI+AAT++NLE VQEGKFREDL Sbjct: 241 LDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ V LPPLRER+EDI L +F++ AR+ + E + AWPGNV Sbjct: 301 YYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNV 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+++N C VMA +++ D+P + + A +L + Sbjct: 361 REIKNVCEQAVVMARNSVLMLDDMPL-------------IGNGNGFLEFKNNAKISLDTN 407 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + L + E+E+ ++ +L ++Q A+ LG R +L K+KE + Sbjct: 408 DKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 670 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 199/474 (41%), Positives = 284/474 (59%), Gaps = 9/474 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + VVDD++++R VL L+ G T E+G E L L D++++D+RMP +D Sbjct: 4 EKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL+ + P PV+++TAH +D AV A + GAFDY+ KPFD +E +V++A+ Sbjct: 64 GMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRT 123 Query: 122 YQEQQQ-------PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + IIGE+P +Q+++ I+ R++ + +VLI+GESGTGK Sbjct: 124 RDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESGTGK 183 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA ALH +S R PFI +N AAIPKDL+ESELFG+E+GAFTGA + GRFE A GG Sbjct: 184 ELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELASGG 243 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIG++P ++Q +LLRVL + +F RVGG + VDVR++AAT+++L++ + G FR Sbjct: 244 TLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFR 303 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF+RLNV+ + LP LR+RR DIP L HF+ L + + PE L AWP Sbjct: 304 EDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASHAWP 363 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+LEN + A G + + DLP E+ A S A A + Sbjct: 364 GNIRELENVVERALLFADGARIRLDDLPEEIRGG--ATSAPGAALPLAAAAADTSAAPST 421 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 G + + A +LER L+ AL+ T G+ AARLL R L K+KEL + Sbjct: 422 PDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMKELNL 475 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 201/469 (42%), Positives = 288/469 (61%), Gaps = 14/469 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + VVDDD+ +L L G G T +GAE +E + S+ D +L D+RM GM G Sbjct: 2 RAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L IK+ +P +PV+IMTA+S ++ AVSA + GA+DYL KP D+D VERA+ H Sbjct: 62 MEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHL 121 Query: 123 QEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + ++ N++ +IIG++PAM+++F +I ++ + +VL+ GESGTGKELVA Sbjct: 122 RLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVA 181 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH SPRA P +A+N AA+ + L+ESELFGHEKGAFTGA R+GRF AD G++FL Sbjct: 182 KALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFL 241 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ +Q +LLRV+ + + RVGG PV VDVRI+AAT+++L++ V+ G+FREDL+ Sbjct: 242 DEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLY 301 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + +PPLRER +DIP LA+HFL A + K P L R WPGNVR Sbjct: 302 YRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVR 361 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN +++ G+ V ++LP ++ + Sbjct: 362 ELENAVERAVILSVGEYVTERELPL----------SAMREAGGNGAPGGAGGGAPAPGDM 411 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 L A ++ER ++ LR T G+K EAAR+LG R TL +KLK+ G Sbjct: 412 AGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 171/473 (36%), Positives = 264/473 (55%), Gaps = 31/473 (6%) Query: 1 MQ-RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + + ++DD+ + VL L G T ++G L L D+L++D+++P Sbjct: 1 MSTKKRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPD 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 + GL +L+Q+K P LPV+++TA+ + AV A + GAF+YL KP D DE + LV+ Sbjct: 61 ITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVF 120 Query: 120 SHYQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 Q ++ R ++ +++G++ AMQ++F +I ++++ +VL+ GE+GTGKE Sbjct: 121 ERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA +H PF+ ++ AA+P+ L+ESELFGH +GAFTGA ++G+ E A GGT Sbjct: 181 LVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++PL +Q + LR L + + R+G KVDVRIIAAT+++LE + G++RE Sbjct: 241 LFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNVI + +PPLRERR+DIP L HFL + G + + E WPG Sbjct: 301 DLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN V+ G + + LP +L E + ++ Sbjct: 361 NVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVN---------------- 404 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+E+ L+ L T+ ++ AAR LG R L K+K G+ Sbjct: 405 ----------LMEMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 195/471 (41%), Positives = 276/471 (58%), Gaps = 21/471 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V VVDD+ S+R L L T NG + + L PDVL++DIRMP Sbjct: 1 MVKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEK 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG LL+QIK +PVI+MTA + A+ A + GAFDY+ KPFD+DE + L++RA++ Sbjct: 61 DGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVA 120 Query: 121 HYQEQQQPRNVQLNGPTTDI--IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q +T I IG +P+M++V++ IGR++ S+ +VLI GESGTGKELVA Sbjct: 121 QSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H +S R PFI +N A +P L+ESELFG+EKGAFTGA++++ GRFE A GT+F Sbjct: 181 RAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFF 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ L Q +LLR + + +F RVGG +KV+VRI+AAT++ L+Q V+EG+FREDLF Sbjct: 241 DEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+ + +PPLR+R+EDIP L HFL +E E K E L WPGNVR Sbjct: 301 FRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN +MA G ++ +D+ ++Q Sbjct: 361 ELENVVERSIIMARGAIIVPEDIQL-------------------GATVSQQPTELEILDE 401 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + ++ER ++ AL + A++L R +L K+KELG+E Sbjct: 402 NLSLKQIISDVERKVILKALEENNWCRTTVAKVLKINRRSLYAKMKELGIE 452 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 666 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 199/469 (42%), Positives = 289/469 (61%), Gaps = 21/469 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +VDD+ ++R +L A A G NG L A PDV+L DIRMP MDG+ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LK+++ PVI+MTA+++++ AV A + GAFDY+ KPFD+DE +V+RA+ Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSM 125 Query: 125 QQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ R++ T I+ +PAM D+ + +++ S SVLI+GESGTGKEL+A A Sbjct: 126 KKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARA 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +S RAK PFI +N AA+P+ L+ESELFGHEKGAFTGA T+RQG FE+A+ GTL LDE Sbjct: 186 IHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG+MPL +Q +LLR+L + +F R+GG+ +KVD+RIIAAT+++L+ V+EG FREDLF+R Sbjct: 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI + LPPLR+RREDI LA HFLQ + E + + P + LT +WPGN+R+L Sbjct: 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIREL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N VM +G + +DLP ++ + + P + Sbjct: 366 SNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPV-----------------GER 408 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E +E+ ++ L +G++ A +LG R L KL+E G++ Sbjct: 409 NLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 194/470 (41%), Positives = 279/470 (59%), Gaps = 17/470 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+ + +L AL+ G+ T NG L+ L + D+++SD RMPGMDG Sbjct: 3 HNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMDGP 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL +IKQR+P LPVI+MTA+S + AV + + GA+DY+ KPFDIDE V +A+ Sbjct: 63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRD 122 Query: 124 EQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + ++ ++G++PA + V + + + S+ ++L+ GESGTGKE+VA Sbjct: 123 ILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+H RA PF+A+N AAIP+ L+ESE+FGH KGAFTGA R GRF+QAD GTLFLD Sbjct: 183 AIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GDMPL +Q ++LR L + VG KVDVR+IAAT++NL + V +FREDL++ Sbjct: 243 EVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV + LP LRER EDI LARHF G PE A+ AWPGN+R+ Sbjct: 303 RLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N T++A GQ + +DLPG LF + S ++ Sbjct: 363 LQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAA-------------ISVGPQVP 409 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + L A E+E+ + AL+ + G + AA+L+G + +LK+LG++ Sbjct: 410 SDLEAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQ 459 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 181/473 (38%), Positives = 272/473 (57%), Gaps = 20/473 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+S +R L L + T E+G + L + D++++D++MP + G Sbjct: 1 MEKILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L++ K+ P V+++TA ++ AV A + GAF+YL KPF D A++E+A H Sbjct: 61 IDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHL 120 Query: 123 QEQQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q+ + ++ T D IIGE+P M+ + R + R+++S+ SV INGESGTGKE+ Sbjct: 121 SLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEV 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H +S R++ PFI +N AAIP+ LIESE FGHEKGAFTGAN R GRFE A GTL Sbjct: 181 IAQAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEI ++PL VQ +LLR + + +F RVGG P+KVDVR+I+ ++++++ + RED Sbjct: 241 LLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV+ ++LPPLR+R EDI LA +FL+ E +AK E+ L AWPGN Sbjct: 301 LYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N VM E+ + L E + T+ + T L Sbjct: 361 VRELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTLTSL---------- 410 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ELE+ L+ L+ ++ + A +LG TL KL E M+ Sbjct: 411 ----PVGMTLQELEKRLIIETLQAQHNNRTKTAEVLGISVRTLRNKLNEYNMK 459 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 664 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 190/486 (39%), Positives = 273/486 (56%), Gaps = 20/486 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DD+ IR+ L L G +G + L LA +TPD++ DI MPGMDGL Sbjct: 3 ARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 A+L Q+ + P LPVI+++ H ++ AV+A ++GA D++ KP +++ + +RA+ + Sbjct: 63 AVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGD 122 Query: 124 EQQQPRNVQLNGPT---TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ ++ + PT ++ G +P M+ + I R++ + VLI GE+GTGKEL A A Sbjct: 123 LRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARA 182 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S RA P +A+N AAIP++LIESELFGHEKGAFTGA++ + G+FE A GTLFLDE Sbjct: 183 IHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDE 242 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM L Q ++LR+L + QF RVGG+ ++VDVR+IAAT++NLE + G FREDL++R Sbjct: 243 IGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYR 302 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L V + LPPLRER D+P L F Q AR+ GV P+ + AL R WPGNVR+L Sbjct: 303 LRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVREL 362 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAE-----------------STSQMQPDSWA 403 N + ++ AG EV LP E + A T Sbjct: 363 RNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQGGD 422 Query: 404 TLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 L D A L A+ E L L G+ A +G R+ L RKL Sbjct: 423 PLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYRKL 482 Query: 464 KELGME 469 K ++ Sbjct: 483 KGYNIQ 488 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 201/476 (42%), Positives = 298/476 (62%), Gaps = 7/476 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V DD+ S+RWVL +AL G T ++G + L + + D+ + DI+MPGM Sbjct: 1 MTLTRILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL LL +I++ L V+IMTA + + AV A ++GA+DY+ KPFD+D A+VE+ Sbjct: 61 SGLDLLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGR 120 Query: 121 HYQEQQQPRNVQLNGPTT-----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + Q ++ +IIG + AMQ +++ IG+++ S I++LI GESGTGKE Sbjct: 121 AREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 +VA A+H +S R PF+A+N AAIP+DL+ESELFG E+GAFTGA+ +QG+FEQA+ GT Sbjct: 181 MVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDMPLD+Q ++LRVL + + RVGG + V+VRI+AAT+Q L++RV++ +FRE Sbjct: 241 IFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ + L PLRERR+DIP L R+FL EL + K L PE A L+R +WPG Sbjct: 301 DLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSW--ATLLAQWADRA 413 NVR+LENT + +++ + D G E T Q L Sbjct: 361 NVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGI 420 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++ ++ ++ER L+ L T+ ++ +AA +LG RNTL +K+ +L +E Sbjct: 421 EKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 177/467 (37%), Positives = 271/467 (58%), Gaps = 17/467 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + V++D+++ R + L AG TT E G + LE L+ +V+L+D+ +PG+ G+ + Sbjct: 18 ILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGIEI 77 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK++K++ P VI++T ++AV A ++GAFDY+ KP ++ ++ +A+ + Sbjct: 78 LKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSRLV 137 Query: 126 QQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + ++ +IIG + MQ VF + ++ + ++LI GESGTGKELVA A+ Sbjct: 138 AENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAI 197 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H + R + PF+A+N AIP +L+ESELFGH +GAFTGA + G+F+QA GT+FLDEI Sbjct: 198 HYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEI 257 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G MPL +Q +LLRVL + + +VG +K+DVR+I+AT+ NLE+ V++G+FR DL++RL Sbjct: 258 GTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRL 317 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLRERREDI LAR+FLQ E+ + P L WPGNVR+LE Sbjct: 318 NVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRELE 377 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + + DLP + S + Q+ + Sbjct: 378 NVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRL-------------TESGMD 424 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E +ER L+ +A+ + G K AA LL R TL K+K LG+ Sbjct: 425 MPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 661 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 172/472 (36%), Positives = 264/472 (55%), Gaps = 13/472 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M V +VDD+ IR+ L L G E G E L+ PD++ DI +PGM Sbjct: 1 MN-ARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +L ++ LPVI+++ H +++ AV+A ++GA+D++ KP +++ V +A+ Sbjct: 60 DGLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALE 119 Query: 121 HYQEQQQPRNVQL---NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +Y+ +++ + ++ T ++ G + ++ ++ IGR++ + VLI GE+GTGKE+ Sbjct: 120 YYRLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIA 179 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ++H S R P +A+N AAIP++LIESELFGHEKGAFTGA T + G+FE A GTLF Sbjct: 180 ARSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLF 239 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI DM L Q ++LR+L + F RVGG+ VKVDVR+IAAT+++LE + G+FREDL Sbjct: 240 LDEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDL 299 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RL VI + +PPLR+R +D+ L F+ E G P+ +AL WPGNV Sbjct: 300 YYRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNV 359 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N + +M +GQ V LP E + ++ + Sbjct: 360 RELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGV------- 412 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A+ E L L+ G+ A +G R+ L RKLK ++ Sbjct: 413 --MDFKAARTAFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNIQ 462 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 661 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 189/475 (39%), Positives = 266/475 (56%), Gaps = 24/475 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + V VVDD+ ++R +L L G T NGA+ LE +A + D +L DI+MP MD Sbjct: 7 PKKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMD 66 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GLA L + P VI+M+A+ +D AV A + GA+DY+ KPF DE + +++A Sbjct: 67 GLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASER 126 Query: 122 YQEQQQPRNVQLN-------GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + +++ ++ II ++ AMQ V +I +++ +VL+ GESGTGK Sbjct: 127 ERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGK 186 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA +LH +SPRA I +N IP++L+ESELFGH KGAFTGA+ + G E A G Sbjct: 187 ELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAHKG 246 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIG++P +Q +LLR+L D + VG A +D+RI+AAT +NLE V EG FR Sbjct: 247 TLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGVFR 306 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF+RLNV+ +HLPPLR+R+EDIP L F+Q ++L L P + L WP Sbjct: 307 EDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHTWP 366 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+LEN V+A G + DLP + T A AL Sbjct: 367 GNVRELENLIERAVVLAEGDTITPDDLPP-----------------GFGTDSAGGPGDAL 409 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + AQ E+ L+ AL T G++ ++LL +L K+KE G+E Sbjct: 410 AGFDGYSIKAAQKIFEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 190/466 (40%), Positives = 289/466 (62%), Gaps = 6/466 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V V+DD++++R VL L G T ENG + L D++++D+ MP + G Sbjct: 1 MAKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L I+ +P +PVII+TAH +D+AV A + GAFDY+ KPFD E ++V +A Sbjct: 61 MEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTN 120 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + ++ + IIG++ +Q+V++II +++ + +VLI GESGTGKEL+A ALH Sbjct: 121 ESARRSVRPDVKAR-AAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALH 179 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R PFI +N AAIP L+ESELFG+E+GAFTGA T + GRFE AD GTLFLDEIG Sbjct: 180 GASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIG 239 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++P+++Q +LLR + +G+F RVGG +VDVR++AAT+++L+ ++ G+FR+DL++RL Sbjct: 240 EIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLA 299 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ + LP LRERR D+P LARHF++ R L + + + + A L AWPGN+R+LEN Sbjct: 300 VVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELEN 359 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + + A G + +DLP + + T ++ + A+ +A G ++++ Sbjct: 360 LIERVLLFADGPLITARDLPEPVRQGTGVQAGAN-----LASAVASIDVPTGEVGLKDIV 414 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELER L+ L T G+ AARLL R +L K+KE G+ Sbjct: 415 RMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 280/470 (59%), Gaps = 18/470 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+ + +VDD+ SI L L G T ++G E + L P ++L DI +PG+ Sbjct: 1 MQK-SILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGI 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +LK IK HP LPV++M+ H ++ AV A + GAFD++ KP +++ + ++ A+ Sbjct: 60 DGMEVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALD 119 Query: 121 HYQEQQQPRNVQLNGPTT-DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +++ ++ ++ G++P + ++ +I ++ ++ +LI GE+GTGKELVA Sbjct: 120 LSRLEEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVAR 179 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+HR S RA P + +N AAIP++LIESELFGHEKGAFTGA ++G+F+ A GT+FLD Sbjct: 180 AIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLD 239 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+ DM L Q ++LR+L + +F RVGG +++DVR++AAT+++LE+ ++EG+FR+DLF+ Sbjct: 240 EVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFY 299 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI + +PPLR R+EDIP LA FL A + G K + + A L +WPGNVR+ Sbjct: 300 RLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRE 359 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N L +M + + D+P + E + + A Sbjct: 360 LKNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLA---------------- 403 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 EA+ + E+ ++ LR G+ + A +G R+ L +K+K G+E Sbjct: 404 GSFREAKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKIKAYGLE 453 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 192/472 (40%), Positives = 267/472 (56%), Gaps = 19/472 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + + +DD R L L G +NG + ++A +++++D++MP Sbjct: 12 MKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPNG 71 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LLK +K +P VI+MT + +D+AV A + GAFDY+ KP D V RA+S Sbjct: 72 DGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRALS 131 Query: 121 HYQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q++ +++ ++G + M+ +F I ++++S +V+I GESGTGKEL Sbjct: 132 YASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKEL 191 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H +S R P I +N AIP+DL+ESELFGHEKGAFTGA R GRFE A GG++ Sbjct: 192 VARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGSI 251 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM +Q ++LRV+ + QF R+GG + DVRIIAATHQNLE V E +FRED Sbjct: 252 FLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFRED 311 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+R+NVI +HLP LRER DI LA HFLQ A+ E PE A + WPGN Sbjct: 312 LFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWPGN 371 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN L VM E+ ++DLP ++ + Q Sbjct: 372 VRELENLIEMLVVMKEDGEIKLEDLPSKIRQ---------------FKKETQSFKEYQIP 416 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ + E+ +L AL T G K AA+LL R TL KLK L + Sbjct: 417 EEGIDFNDVVYQFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKRLNI 468 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 656 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 187/471 (39%), Positives = 267/471 (56%), Gaps = 27/471 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDD+ + R + L G NGAE L + +P V+L+D+RMP M Sbjct: 1 MSPQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LLK +++ ++MTA + ++ AV A + GA ++L KP D D+ + + + + Sbjct: 61 DGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLE 120 Query: 121 HYQEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 +Q+ ++ DIIGE+P +Q ++ +I R + + +VLI GESGTGKE Sbjct: 121 KRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A ALH+ SPR PFI ++ AA+ ++L+ESELFGHEKG+FTGA ++GRFE ADGGT Sbjct: 181 LIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ VQ +LLRVL +F RVGG +KVDVRI+AATH++L V+ G+FRE Sbjct: 241 LFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ V LPPLR+R+ D+P L HFL+ + G + + L P T AL WPG Sbjct: 301 DLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+LEN V+A GQE+ DLP L +++ Sbjct: 361 NIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGA------------- 407 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +ER + L QG AA +LG + +LKE Sbjct: 408 ---------TLAAIEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 656 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 171/472 (36%), Positives = 261/472 (55%), Gaps = 17/472 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDD+ + R L T + G E L+ + D+L+ D+ MP M Sbjct: 1 MS-ARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +L+ +K+RHP + VI+MT S++ AV A + GAFDYL KPFD DE +V RA+ Sbjct: 60 DGLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALE 119 Query: 121 HYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q Q+ R ++ +IIG +P MQ VF +I + + ++ +VLI GESGTGKE+ Sbjct: 120 RRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEM 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H +S R PF+ ++ + ++L+ESELFGH KG+FTGA ++G F+ A+ GTL Sbjct: 180 IARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTL 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE G++PL Q +LLRV+ + +F VG K +VR+I AT+++L+ V EG FRED Sbjct: 240 FLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R+NV +H P LRERR+DIP LA HFL++ ELG + + L WPGN Sbjct: 300 LYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LENT + ++++ + L + S + D L+ Sbjct: 360 VRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDE------------LKR 407 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + ++ E+E+ + L+ + +A G R +K+ + Sbjct: 408 IKKIAREKSVEEVEKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKKYNI 459 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 175/465 (37%), Positives = 269/465 (57%), Gaps = 27/465 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +DD+ S + L G T T E +E L + T + +L D R+PGMDG Sbjct: 1 MANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL+ +K +P +++TA+ ++ AV A + GA+ YL KP D + + +++ AI Sbjct: 61 IDLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKS 120 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + Q+ ++ P +IIG++ +Q++F I+ ++ S+ +VLI GESGTGKELVA A+H Sbjct: 121 KGIQKLE--KIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIH 178 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 ++S R PFI ++ IP++L+ESELFGHEKGAFTGA + G E A+ GT+FLDEIG Sbjct: 179 KNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIG 238 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 ++P+ +Q +LLR L + + R+G +KVDVR+I+AT+++LE+ ++EG FREDL+ RLN Sbjct: 239 ELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLN 298 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+R++LPPLRER+EDIP L HFL ++E L PE AL WPGN+R+L N Sbjct: 299 VVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELAN 358 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V++ + I+ LP + E+T + + Sbjct: 359 VIERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFN---------------------- 396 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+E+ L+ AL T ++ +AA +LG R L K+K G Sbjct: 397 ---LLEVEKALILKALNSTGWNQTKAAEILGISRKQLRTKMKHHG 438 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 188/468 (40%), Positives = 280/468 (59%), Gaps = 27/468 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V +VDDD S+R VLE L G T +G E L P ++++D++MPGM G Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQ 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL+++K+R P VI++TA ++AAV A + GA+D++ KPF+ + V +A+ Sbjct: 70 LLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQGL 129 Query: 125 QQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ R ++ IIG +P M++VFR+I R++ + +VLI GESGTGKELVA A Sbjct: 130 SRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARA 189 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S R APF+A+N AAIP+DL+ESELFGH KGAFTGA ++G+F QA+ GTLFLDE Sbjct: 190 IHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDE 249 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G++P+++Q++LLR L + + VGG +K+DVR++AAT+ +LE+ + EG+FREDLF+R Sbjct: 250 VGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYR 309 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+VI VHLPPLRER+EDIP L RHF A + G + PE A + WPGNVR+L Sbjct: 310 LSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWPGNVREL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 ENT + +M + DLP ++ + ++ Sbjct: 366 ENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGY--------------- 410 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +LER ++ AL ++ AAR L R+TL ++++ + Sbjct: 411 ----SLEQLEREIVVEALERNNWNQSSAARFLRIPRHTLIYRMEKYSI 454 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 291/473 (61%), Gaps = 24/473 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+ + +L L G T +G E ++ L D++L+D++MPGMDG Sbjct: 1 METILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L+++IK R P LPV++MTA+ +D ++A ++GA+ Y+ KPF ++ + V++A++ Y Sbjct: 61 MELMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMY 120 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + Q+ R ++ +IIG++PAM ++F I +++ ++ +VLI GESGTGKE+VA Sbjct: 121 RVVQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ++H +S R AP++A+N AA+ + ++ESELFGHEKGAFTGA +++GRFE ADGGTLFL Sbjct: 181 KSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ +Q +LLRVL + F RVGG P++VD+R+IAAT+++L++ V+ FREDLF Sbjct: 241 DEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAAR--ELGVEAKLLHPETEAALTRLAWPGN 356 +RLNV+ + LPPLRER++DIP L HFLQ A + +HP+ AWPGN Sbjct: 301 YRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN ++ + + DLP EL S + P Sbjct: 361 VRELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIP----------------- 403 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E +E+ ++ A+ + + AA++LG G++ L +K+K+ G++ Sbjct: 404 -VDATLYETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 654 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 177/499 (35%), Positives = 283/499 (56%), Gaps = 33/499 (6%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V +VDD+ ++R VL+ L G +G E LE L + DV+++D++MP + G Sbjct: 1 MEKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL+ + +P PVII+TAH ++ AV A ++GAFDY+ KPFD DE ++++E+AI Sbjct: 61 LGLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTR 120 Query: 123 -QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + + I+G + ++++++ I +++ + ++LI GE+GTGKEL+AHA+ Sbjct: 121 IKNHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAI 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR SPR +I +N AI K+LIE+ELFG+EKGAFTGA + + G+FE AD GT+FLDEI Sbjct: 181 HRGSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEI 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P D+Q +LL+VL D F RVGG ++VDVRIIAAT+++L + ++EG FREDL++RL Sbjct: 241 GEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRL 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLRER+EDI L +FL +L ++ K + P+ + WPGN+R+LE Sbjct: 301 NVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELE 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWA--------------TLLA 407 N + ++ G + +D+P E+ + + L+ Sbjct: 361 NLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERLVL 420 Query: 408 QWADRALRSGHQNLLSEAQP------------------ELERTLLTTALRHTQGHKQEAA 449 R L ++ E+E+ ++ L G+ AA Sbjct: 421 MARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECSGNITHAA 480 Query: 450 RLLGWGRNTLTRKLKELGM 468 + LG+ R L K+ + + Sbjct: 481 KRLGFSRKGLQIKMVKYNL 499 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 653 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 176/469 (37%), Positives = 266/469 (56%), Gaps = 26/469 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 +G + VVDD+ S+R L + G T E+ E L +A +T D+ L DI+M G D Sbjct: 4 SKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMRGTD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L +++ + P L VI+MT ++ ++ AV+ + GA+DY+ KP D +E LV +A++H Sbjct: 64 GVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKALAH 123 Query: 122 YQEQQQPRNVQLNGPTT---DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + +Q+ ++ D++ + AM+ + I ++ + +VLI GESGTGKE+VA Sbjct: 124 KRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R P + ++ A+ + L+ESELFGHEKGAFTGA ++G+FE A+GGT+FL Sbjct: 184 RAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFL 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ L QT LLRVL + + RVGG P+KVD RI+AAT+++LE+ ++EG FR DLF Sbjct: 244 DEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLF 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV R+ LPPLR+RREDIP L HF + A ++ + L + WPGNVR Sbjct: 304 YRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+A E+ D ++ + ST+ Sbjct: 364 ELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTP------------------ 405 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + ++E+ + L T ++ AA +L R TL K+K G Sbjct: 406 -----KTLEDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 181/472 (38%), Positives = 266/472 (56%), Gaps = 23/472 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDD+ S+R L L G +G + + L + D+++SDI+MP +D Sbjct: 26 NQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLD 85 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G LL +K+R +I++TA S + AV A ++GA+DY+ KPF +E +VE A+ Sbjct: 86 GFGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALER 145 Query: 122 YQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +++ ++ +IIG++ MQ V+ +I ++S S ++VLI GESGTGKELV Sbjct: 146 MDLRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELV 205 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +S R PF+A+ AIP++L+ESELFGHEKGAFTGA +QG FE ADGGTLF Sbjct: 206 ARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLF 265 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI ++P +Q +LLRV+ + +F +VGG +KVDVR++AAT+++L Q V E +FREDL Sbjct: 266 LDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDL 325 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI+V LPPLR+RREDIP L HFLQ + WPGN+ Sbjct: 326 YYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTIPDGVMRRFLDYHWPGNI 382 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LENT V+ E+ LP + + Sbjct: 383 RELENTVERCVVLGGKGEITEDSLPPHMLCISGTG----------------DQQLTELPE 426 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + +E+ +L AL T G ++ AA LL ++ +L + G+E Sbjct: 427 EGLDLDDYLGAIEKDILLKALDRTGGVRKRAAELLHITFRSIRYRLAKFGIE 478 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 652 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 269/473 (56%), Gaps = 24/473 (5%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V V DD+ S+R VL+ AL G T +NG E L DV + DIRMP +DGL Sbjct: 16 RVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPEVDGLQ 75 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +I + P LP+I+MTA + AV+A + GA+DY+ KPF++DE +V RAI Q Sbjct: 76 AFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAIRMQQL 135 Query: 125 QQQPRNVQLNGP--------TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 ++ + I+GE+ +Q+V++IIGR++ S +VL+ GESGTGK + Sbjct: 136 TKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGESGTGKGM 195 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R + PFI +N +IP+ L+ESE+FGHEKGAFT A + G+FE A+GGTL Sbjct: 196 VAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFELAEGGTL 255 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI +M ++Q +LLRVL + +F RVGG +VRIIAAT+++L + + E FR+D Sbjct: 256 FLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISEKSFRKD 315 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV+ + LPPL ER EDI LA +FL+ + E+G PE +WPGN Sbjct: 316 LYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRNYSWPGN 375 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+LEN +M+ + +L ++LP + + L Sbjct: 376 IRELENAVEHAIIMSNTRVILPENLPLSIK----------------VEDVEADGTIILGD 419 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E+E+ ++ A+ T G++ +AA+LL R L K+ E ++ Sbjct: 420 DSFKPLREVLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINENNID 472 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 652 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 182/469 (38%), Positives = 273/469 (58%), Gaps = 18/469 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+ + R VL + L G T +N L+ L+ + D+++SD++MP M G Sbjct: 1 MAHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L+ + +P I++TA++ + A+ A + GAFDYL KPFD +E + V++A+ + Sbjct: 61 IDFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYS 120 Query: 123 QEQQQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + Q + ++ ++G +PAM+ + I +++ + S+LI GESGTGKELVA Sbjct: 121 KLQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQ 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALHR SPR+ +++N AA ++L+ESELFGHE+GAFTGA ++G E +DGGTLFLD Sbjct: 181 ALHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+ PL++Q +LLRVL + F RVGG A + D+RIIAATH+NLEQ + EG FREDL++ Sbjct: 241 EIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ +HLPPLR RREDIP L++ FL+ +R++G L + + L WPGNVR+ Sbjct: 301 RLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N + G + LP + Q Sbjct: 361 LQNILERGLLFCDGPTLEQNHLPQQFHSQAP---------------HHNGCSETAAMPLQ 405 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E +E+ L+ AL +G + +AA LLG R+ L KLK+ + Sbjct: 406 QPLPEHLETIEQKLIQAALIDARGVQAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 652 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 344/471 (73%), Positives = 401/471 (85%), Gaps = 2/471 (0%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+G VWVVDDDSSIRWVLERA+ G+ C FE+ +VL+AL S+ PDVLLSDIRMP M Sbjct: 1 MQKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL+LLK IK+++P LPVIIMTAHSDLDAAV+AYQQGAFDYLPKPFDIDE +AL+ERAI+ Sbjct: 61 DGLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAIT 120 Query: 121 HYQEQQQPRNVQL-NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 HY+EQ+QP N + +D+IGEAPAMQ+V+RIIGRLSRSSISVLINGESGTGKELVAH Sbjct: 121 HYREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAH 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALHRHSPRA APFIALNMAAIPKDLIESELFGHEKGAFTGA+ +RQGRFEQA+GG+LFLD Sbjct: 181 ALHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPLD+QTRLLRVLA+GQFYRVGGYAPVKVDVRIIAATHQ+LE+RV EG FREDL+H Sbjct: 241 EIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYH 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVIR+ LPPLR+R EDIP LAR+FLQ A+ELGVE K LH ++ + W GNVRQ Sbjct: 301 RLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQ 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELF-ESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 LEN CRWLTVM A QE++ QDLP E+ A++ +++ W+ L+ WAD AL G Sbjct: 361 LENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGK 420 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +N+L++A P+ ERTLL +AL +TQGHKQ+AARLLGWGRNTLTRKLKELG+E Sbjct: 421 ENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGIE 471 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 271/475 (57%), Gaps = 9/475 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + +VDDD + L R + + +G LEA+ + D++L D +MPG + Sbjct: 3 KMDKILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LK+I++ P+I+MTA+ +D A+ A + GA+DYL KPFD + + A+ Sbjct: 63 GLETLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEV 122 Query: 122 YQEQQQP--------RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 + ++ + ++ IIG MQ+V+++IG+++ ++VLI GESGTG Sbjct: 123 NRLMKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTG 182 Query: 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 KELVA AL+ HS R PF+ +N AAIP+ L ESELFG+E+GAFTGA G+FE+ G Sbjct: 183 KELVARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCHG 242 Query: 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 GTLF DEI +MPL Q +LLR L G+ RVG P+KVDVR++ AT++NLE+ V++G+F Sbjct: 243 GTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGRF 302 Query: 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 REDL+ RL +I +HLPPLRER EDIP L +FL E + + A L AW Sbjct: 303 REDLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHAW 362 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP-DSWATLLAQWADR 412 PGNVR+LENT R V+++G + + L + + P L + Sbjct: 363 PGNVRELENTVRRAVVLSSGDVIREEHLRFDSGGHEPSSPEWDKNPWARVERKLEELIPD 422 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 L+ G + + +ER LL+ L ++ +AAR+LG RNTL ++K+ Sbjct: 423 LLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKKFD 477 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 176/471 (37%), Positives = 278/471 (59%), Gaps = 24/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + +V+DD ++R + L G T+ ++GA+ L L S+ D+ + D+++PG+DG Sbjct: 2 KEKIIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LLK IK P VII+TA +++ AV A + GAFDY+ KPF +E + ++ER + Sbjct: 62 LTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFR 121 Query: 123 QEQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +++ + + + I+ + M+++F I ++++ + VLI GESGTGKEL+A Sbjct: 122 TLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIA 181 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +A+ + S R + P+I +N AAIP+ L ESELFG+EKGAFTGA ++G+FE A+GGT+F Sbjct: 182 NAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFF 241 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL +Q +LLRV+ DG YR+GG P+K++VR I AT +NL++ ++ KFREDLF Sbjct: 242 DEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLF 301 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +R+NV+ + +PPL+ER+EDIP L FL++ + + G + + P AL +PGNVR Sbjct: 302 YRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVR 361 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L++ +++ + I+ LP E + + + Sbjct: 362 ELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFI--------------------S 401 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E+ L+ AL+ K EAA+ LG R L K+K G+E Sbjct: 402 NFSLKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIKFYGIE 452 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 263/469 (56%), Gaps = 26/469 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VDD+ L L+ G +G + L PDV+LSD+ MP Sbjct: 1 MGSARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPET 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL+ +K+ P PV+ +T +DAAV + ++GA+D++ KP D ++RA+ Sbjct: 61 DGLWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALE 120 Query: 121 HYQEQQQPRNVQL---NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ + ++ ++D+I ++ M+ V ++ +++ S SV I+GESGTGKE+V Sbjct: 121 KKETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVV 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 + A+H S R PFIA+N A+IP LIESELFGHE+GAFTGA+ R G FE A GGTLF Sbjct: 181 SRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+G++P+++Q +LLRVL +G+ R+GG ++VDVR++ AT+++L+Q ++ G+FREDL Sbjct: 241 LDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RLNV ++HLPPLRERR+D+P L +HF+ + G +HPE L WPGN+ Sbjct: 301 YFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNI 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N ++ G+ + + LP ++ + T Sbjct: 361 RELRNAVERAVILCDGELITREHLPPDMAGKSPERHT----------------------- 397 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + +ER + +L+ +K A +LG TL KL Sbjct: 398 FRLPFGLSLDAVEREYILGSLQRNGNNKARTAEVLGVSEKTLYNKLNRY 446 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 649 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 276/479 (57%), Gaps = 14/479 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD++ R L AL G T NGAE LE LA D++L+D+ M GMDGL Sbjct: 37 ARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGL 96 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL+ ++ RHP V+++T + + AV A GA+ YLPKP+D++EA ALV++A+ + Sbjct: 97 DLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKRR 156 Query: 124 EQQQPRNVQLNGPTTDI----IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +Q+ ++ + +G AP MQ + R I +++ S ++VLI GE+GTGKEL A Sbjct: 157 LRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAAR 216 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H S R++A F+A+N A ++L+ESELFGHE+GAF+GA R+G FE A+GGTLFLD Sbjct: 217 MVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFLD 276 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+G+M L +Q +LLR + + RVGG A + VDVR++AAT+++L G+FR DL++ Sbjct: 277 EVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLYY 336 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPL ER ED+P LA++F + AAR+ G A + PET L R +PGNVR+ Sbjct: 337 RLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVRE 396 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSW----------ATLLAQW 409 L N V+ AG + DLP +L + A A+ Sbjct: 397 LHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADEAARM 456 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A + E ER + L G++ AA++L R +L RKLK G+ Sbjct: 457 PGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 648 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 178/474 (37%), Positives = 266/474 (56%), Gaps = 32/474 (6%) Query: 1 MQR-GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + + DD+ + R ++ + L G T +G E ++ + + DV + D+ MP Sbjct: 1 MSKKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMPV 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 M+G+ LK++K P VII+T ++ AV A + GA+DYL KP + E L++RA+ Sbjct: 61 MNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRAL 120 Query: 120 SHYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + ++ +++ + +IG +PA++ VF++I + + S ++VLI GESGTGKE Sbjct: 121 EKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A +H++S RA PF+ +N A + + L+ESELFGH KGAFTGA R G FE A+GGT Sbjct: 181 LAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ ++ Q +LLRV+ G+ RVG + VD RIIAATH+NL V+EG+FRE Sbjct: 241 LFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL+ RLNVI + LP LRER++D+ L +HFLQ + G +HPE A+T WPG Sbjct: 301 DLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDWPG 358 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+LENT V+A G + I++LP + T Sbjct: 359 NIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNG------------------ 400 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 A E+E+ + L+ HK AA+ LG TL K+K ++ Sbjct: 401 -------EIALSEVEKNHIIQVLKEKNWHKPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 196/460 (42%), Positives = 273/460 (59%), Gaps = 24/460 (5%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD S +L+ L G G NG + LE + K D++L DIRM MDG+ Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIET 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+IK +P +PV+IMTA+S +D AV A + GA DYL KP D D+ + A++H + Sbjct: 68 LKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEALAHTRLS 127 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + P ++G++PAM+ + I ++ S +VLI+GESGTGKELVA ALH S Sbjct: 128 ESPVTETPAAQF-GMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASS 186 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R++ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEIGD+ Sbjct: 187 ARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 +Q RLLR + + + RVG + VDVR+IAATH++L + V G+FR+DL++RLNV+ Sbjct: 247 PLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVT 306 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 + +PPLR RREDIP LAR+FLQ A + P+ L AWPGN+R+LEN Sbjct: 307 IDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRELENAVE 366 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 V+ G+ + ++LP + + VA++ H + + Sbjct: 367 RAVVLLTGEYISERELPLAITGTPVADA-----------------------PHGDDSIQP 403 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 E+E+ + AL T G+K EAAR LG R TL KL Sbjct: 404 LVEVEKEAILAALERTGGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 179/471 (38%), Positives = 276/471 (58%), Gaps = 21/471 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + ++DD+ + VL+ L G T T + L L DV+++D++MP + Sbjct: 3 EKAHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMPKVT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G +L+++K+ P +PV+IMTA +++AV + GAFDY+ KPF DE + + A+ Sbjct: 63 GRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNAVEL 122 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +Q R +Q I+G + A++DV ++ R + S +VLI GESGTGKEL+ Sbjct: 123 ARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H SPR PF+++N A+ ++ESELFGHEKG+FTGA +R+GRFEQADGGTLF Sbjct: 183 ARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI ++ D+Q +LLRVL + +F RVGG ++VD+R++AAT+++L V++G FR+DL Sbjct: 243 LDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+++ LPPLRERREDIP L HF+ + + AK E LT WPGN+ Sbjct: 303 YYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNI 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLEN V+ G + + +LP E+ + +Q+ Sbjct: 363 RQLENVVESCLVLVPGTVINVDNLPAEIRDEE-----------------SQFKSAVDLLP 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 Q L++ ++E L+ AL + +AA LG ++ L KLK+ + Sbjct: 406 VQLDLADTLEKIEAALIRRALVRADLVQVKAAEYLGISKSLLQYKLKKYAI 456 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 182/474 (38%), Positives = 273/474 (57%), Gaps = 24/474 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + VV+D S R +L L G T +G E ++++A D++L D +MPGM Sbjct: 1 MKSLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +L+++K+ +P V+I+TA+ ++ AV A + GA DY+ KP + DE + L++R Sbjct: 61 DGMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAE 120 Query: 121 HYQEQQQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 ++ ++ II + M + + R++ S +VL+ GESGTGKE Sbjct: 121 RRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A +H+ SPR+ P I +N A+P+ LIESELFGHEKGAFTGA + R GRFE+ADGGT Sbjct: 181 LLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ + VQ +LLR L + +F RVGG ++ DVRII+AT+++LE V+E KFRE Sbjct: 241 LFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV+ + +PPLRERREDIP L HFL+ A E G + + E L + +PG Sbjct: 301 DLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN V+A + + ++DLP + + Sbjct: 361 NVRELENIIERAVVIARNEIIYMEDLP-------------------FREDTLVATSGGVP 401 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + L A LE+ ++ A+ H+ AA +LG L KLK+ G++ Sbjct: 402 EEGEGRLRGAIENLEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 170/466 (36%), Positives = 272/466 (58%), Gaps = 20/466 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DDD ++ V+ G + +G + LE+LA P ++++D+RM + G Sbjct: 1 MARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L++ ++ P PVI++TA+ ++ A+ A + GA+DY+ KPF +DE ++RA+ + Sbjct: 61 LDILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQ 120 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 ++ RN++ +IIG + MQ+++ +I +++ + ++LI GESGTGKELVA Sbjct: 121 SLVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH +S R PF+A+N +A+P++L+ESELFGH+KG+FTGA + G FE+A+GGT+FL Sbjct: 181 RALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ M +QT+LLRVL + Q RVG V ++VR++AAT++ L +++ G FREDL+ Sbjct: 241 DEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL VI V +P LRER +DIP L HFLQ A + G EAK + P+ L + WPGNVR Sbjct: 301 YRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN + + DLP ++ A + + Sbjct: 361 ELENAVERACALCDDALIRTTDLPPQVIRHATAPP----------------VEHSGTLPV 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 L E E ER + ++ +++AA++LG TL RKL+ Sbjct: 405 GQTLDEYIREQERRYIEETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 180/471 (38%), Positives = 280/471 (59%), Gaps = 27/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VV+D+ +R V+E L AG + E L+ + D++L+D+++P MDG Sbjct: 2 KKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRA--DMVLTDLKLPNMDG 59 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L I++++ +PV++MTA +++ AV A + GA D+L KPF +D + +V++A+ Sbjct: 60 QEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVR 119 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +++ R ++ +I+G +PAMQ++F I R+ S +VL+ GESG GK+L+A Sbjct: 120 ALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H HSPR P + +N AIP++L+ESELFG+EKGAFTGA T + G+FEQAD GT+FL Sbjct: 180 RAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+P +Q +LLRVL + +F R+G +DVR++AAT+Q+L +++G FREDL+ Sbjct: 240 DEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ +++PPLRER+ DIP LA HF+ A + G + + + L WPGNVR Sbjct: 300 YRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNVR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN VMA G ++ D+ E A+ H Sbjct: 360 ELENVIERSLVMATGTQLDADDIKLESAPRPRAQG---------------------NDNH 398 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + + E+ ++ ALR G+K +AARLLG RN L +L ++G+E Sbjct: 399 FLPEGLSLDQYEQEIIREALRRADGNKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 161/474 (33%), Positives = 269/474 (56%), Gaps = 22/474 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALAS-KTPDVLLSDIRMPG 59 M+ + VV+D ++R L A G +G ++ L+ D++++D++M Sbjct: 2 MKNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKK 61 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 ++GL +L +K +P VI++TA+ + AV A ++GA+DY+ KPF E + + + A+ Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 120 SHYQEQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + +++ + + + IIG + M +V ++ +SR+ +VLI GESGTGKE Sbjct: 122 EKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKE 181 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A A+H + PR+ PF+ +N A+P++L ESELFGH KG+FTGA + G F A GT Sbjct: 182 LIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGT 241 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIG+ Q +LLR L DG+ +VGG + VDVRIIAAT++NLE+ V +G+FR+ Sbjct: 242 IFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRK 301 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+R+NVIR+HLP L+ER+EDIP L +FL++ +L + ++ A L WPG Sbjct: 302 DLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPG 361 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L+N ++ Q + ++ LP +A ++ Sbjct: 362 NIRELQNIVERAVALSKNQVIGVEALPL-----------------PTGGFVAHNSNPERD 404 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ + E E E+ + A+ G++ + +++LG TL RK+K+ ++ Sbjct: 405 VTVKSSIVETLSEQEKNAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKIK 458 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 174/466 (37%), Positives = 273/466 (58%), Gaps = 27/466 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDDD I +++ L G T T + E L + + D++L D MP + GL Sbjct: 3 KRILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + ++K+R PVI+MTA+ L+ AV A ++GAF Y+ KP + +E ++++A+ Sbjct: 63 EFIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSD 122 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 +++ ++ T II E+P M+ V +++ +VLI GESGTGKE++A+ +H+ Sbjct: 123 LKKELNELKSLLSTD-IIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHK 181 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 +S R + PFIA+N AIP +L+ESELFG++KGAFTGANT ++G E+A+GGTLFLDEIG+ Sbjct: 182 NSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGE 241 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 +PLD+Q +LLRVL + + +G P K+DVR IAAT+++L++ V+EGKFREDL++R+NV Sbjct: 242 LPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINV 301 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 I +H+PPLRER+EDI LA++F+ G+ K L + L + GNVR+LEN Sbjct: 302 IPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENI 361 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 + G+E+ D+P + + R + S Sbjct: 362 IERAVLTTEGEEIT--DIPVTVSK------------------------RYILSQELKPFK 395 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 EA+ E E + L L T + +A+++ G R + R +K G+E Sbjct: 396 EAKKEFEESYLKNLLEKTDFNISKASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 646 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 266/470 (56%), Gaps = 22/470 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDDD+ R L L G T NG + + + + D++ D++MPGM Sbjct: 1 MSVEKIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L+++K VI+MTA+ +++AV A ++GA+DY+ KPF D+ L+ R Sbjct: 61 DGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNE 120 Query: 121 HYQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + + + + + + M ++ + ++++S SVLI GESGTGKEL Sbjct: 121 RQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H SPR + PFI +N AA+ + L+ESELFGHE+GA+TGA R GRFE A+ GTL Sbjct: 181 VARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDE+ ++ ++Q +LLRVL + +F RVGG +K+DVRI+A T+++L + +Q+G FRED Sbjct: 241 LLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV+ +HLPPLRERREDIP LA +L+ + E K + L++ WPGN Sbjct: 301 LFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L+N + VM + +E+ +++ S + S Sbjct: 361 VRELKNIMQRAVVMGSSEELGLENF------------------TSLIDIKKSEHTMCNDS 402 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + ++ + E+ L+ T L T G+K +AA LL TL KL + Sbjct: 403 VNIKKNGQSIEDAEKELIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNKY 452 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 646 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 186/467 (39%), Positives = 265/467 (56%), Gaps = 22/467 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + V DDD SIR +L L G + +G +V++ + +PD++L D+RMP +D Sbjct: 4 NNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKID 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ +LKQ++ R +P+I+MTA + + A Q GA+DY+ KPFD+D+ + R Sbjct: 64 GIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRFFEQ 123 Query: 122 YQEQQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + R T+ IIG +P MQ+V++ IG ++ S +VLI GE+GTGKELV Sbjct: 124 QKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELV 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H +S ++ P + +N AA+P+ L+ESELFGHEKG+FTGA+ R+GRFE A GT+F Sbjct: 184 AETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+M L Q +LLRVL + +F RVGG + +KVD R+IAAT++ LE+ V GKFREDL Sbjct: 244 LDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI +HLPPLRER+EDIP L +FLQ + E L WPGNV Sbjct: 304 FYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LENT ++A G + L + D + Sbjct: 364 RELENTIERAVILAQGGVITTHHL------------------VFSQIRTGRNIDLSEVID 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 L EA +E ++ AL +G AA +L + L RKL+ Sbjct: 406 KTRSLDEAMRIIESKIILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 646 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 189/473 (39%), Positives = 288/473 (60%), Gaps = 8/473 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +VDD+ I W L L+ AG T +G+E + L+ PD+ L DIR+P Sbjct: 1 MEHNRILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDA 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL+Q K R L VI++TA++D+D+AV A + GA DY+ KPF+++ ++++A Sbjct: 61 DGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFE 120 Query: 121 HYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSI-SVLINGESGTGKE 175 Q +++ + ++ ++G + +M ++F++I + + +VLI GESGTGKE Sbjct: 121 KRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H HS RA+APF +N AAIP+ L+ESELFGHEKGA+T A+ R+G FE A+GGT Sbjct: 181 LVARAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGDMP +Q ++L+V+ +F R+G ++ DVRIIAATHQ+L V+E +FR Sbjct: 241 VFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRG 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + LPPLRER +DIP L ++F++ E G + + PET A LT WPG Sbjct: 301 DLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L N ++ + + L E+ + + DS A+ +A + Sbjct: 361 NVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHIT 420 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + ELER L+ L + G++ +AA+ L R+TL ++K+ GM Sbjct: 421 IPTGGI---SLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGM 470 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 326/474 (68%), Positives = 377/474 (79%), Gaps = 6/474 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 MQ+G VW+VDDDS+IRWVLERAL A + CT+FE+ VL AL PDVL+SDI MP Sbjct: 1 MQKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDN 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL ++KQ HP LP+IIMTAHSDL+ AV+AYQQGAFDYLPKPFDIDE + LV+RA++ Sbjct: 61 DGLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALN 120 Query: 121 HYQEQQQPRNVQLN--GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +Y+ QQ + IIGEAPAMQ+V+RIIGRLSRSSISVLINGESGTGKEL+A Sbjct: 121 YYRNQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALHRHSP+A PFIALNMAAIPKDLIESELFGHEKGAFTGA+ +RQGRFEQA GG+LFL Sbjct: 181 DALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPLD+QTRLLRVLA+GQFYRVGGY P+KVDVRIIAATHQ LEQ VQEGKFREDLF Sbjct: 241 DEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 HRLNVIR+ LPPLRER EDIP LAR+FL A++LGVE+K+L P+TE L L W GNVR Sbjct: 301 HRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFEST----VAESTSQMQPDSWATLLAQWADRAL 414 QLEN C WLTVM++ Q +L QDLP +L ++ + T + W LA W AL Sbjct: 361 QLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKTAL 420 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + QNLL + P++ERT+L AL +T+GHKQEAARLLGWGRNTLTRKLKE GM Sbjct: 421 ENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEFGM 474 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 174/473 (36%), Positives = 261/473 (55%), Gaps = 11/473 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R V ++DD+ +R + AL G NG + ++ + + D++++D+RMPG Sbjct: 1 MTR-SVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGS 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +++ K+ VI++TAH +D AV A + GA DY+ KPF +DE + V+RA Sbjct: 60 DGLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATK 119 Query: 121 HYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +Q+ ++ ++G+ M+ V + ++ + +VLI GESGTGKE+ Sbjct: 120 VQALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEV 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A+A+HR+SPR I ++ AA+P+ L+E+ELFGHE+GAFTGA R GRFE A GTL Sbjct: 180 IANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTL 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++ VQ +LLRVL + +F RVGG + DVR++ AT +NL++ V+ G+FRED Sbjct: 240 FLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV++V LPPLRER+EDI LA H LQ + + K L ++PGN Sbjct: 300 LFYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGN 359 Query: 357 VRQLENTCRWLTVMA-AGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 VR+LEN +A G E+ DL G+ + S + Sbjct: 360 VRELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPL-----QSGCGFCQEGVSNVTN 414 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + L+E + ER + L + A++ LG R L K K G+ Sbjct: 415 ARQTGTLAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKRYGL 467 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 644 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 177/471 (37%), Positives = 264/471 (56%), Gaps = 28/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPGMD 61 + VVDDD ++ + L G NGA+ +E ++ ++L+D MP MD Sbjct: 1 MKKILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMD 60 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL +IKQ + + VI+MT++ + +AV A + GA DY+ KPF DE V ++E+ + Sbjct: 61 GIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQM 120 Query: 122 YQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + ++ +IIGE+P ++ ++ II +S + ++LI GE+GTGKELV Sbjct: 121 QRLEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELV 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +S R F+ ++ +++ + L+ESELFGHEKGAFTGA R GRF +AD GT+F Sbjct: 181 AKAIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ L VQ +LLRVL D +F VG +KVDVRIIAAT+ +LE V++G FR DL Sbjct: 241 LDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVIR+ LPPLRER EDIP LA HFL + ++ + +T LT AWPGN+ Sbjct: 301 FYRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNI 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN ++ + +D+P L Q Sbjct: 361 RELENVIERAVILCKKNRITPEDVP-----------------------LYQEKMGTRPGL 397 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E + ER ++ L K++ A++L R +L KL + + Sbjct: 398 SGKPLQELLEQTERQIIINTLEANDADKEKTAKILKISRASLYNKLNKYKI 448 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 167/470 (35%), Positives = 268/470 (57%), Gaps = 26/470 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V V+DD+ LE L G T ++G E L+ + + D++L+DI+M +DG Sbjct: 1 MIKVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L++ K +P VI++T ++ ++ AV+A +QGAF Y+ KPF +D ++ A Sbjct: 61 FEILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKV 120 Query: 123 QEQQQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +++ + ++ + II + M + I +++ + +VLI GESGTGKEL A Sbjct: 121 KLKKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +H +S R K PF+A+N A ++L+ +ELFGHEKGAFTGAN +++G E A G+LFLD Sbjct: 181 YIHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI +M L +Q +LLRV+ + +F+R+G P+KVDVR IAAT++++++ V+ GKFREDL++ Sbjct: 241 EITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPLRER++DIP L +F + + + E + E L +PGNVR+ Sbjct: 301 RLNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN V+ ++ ++ LP +L E + T + Sbjct: 361 LENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFM------------------ 402 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ELE+ + LR +K AA++LG R +L RKLK G+E Sbjct: 403 -----SLEELEKEYIKWILREVGNNKTVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 180/471 (38%), Positives = 270/471 (57%), Gaps = 24/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +++D+ S+R L L AG T E G E ++ + + DV+++D+R+PG DG Sbjct: 1 MKKILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +LK +++ P V+++T ++D+ AV A + GAFDY+ KPF+ ++LVER + Sbjct: 61 LEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQT 120 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ +I+ +P+M VF +I +++ SV+I GESGTGKELVA Sbjct: 121 AHVEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +A+H SPR PFI +N AAIP++L+E+E+ G+EKGAFTGA ++G+ E ADGGT F Sbjct: 181 NAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFF 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM +Q +LLRVL F RVGG PV VD+R I AT + L +++GKFREDL+ Sbjct: 241 DEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +R+NV+ + LPPLRER +DIP L F+ R+ G + + PE L +PGNVR Sbjct: 301 YRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L++ + + + LPGE+ E + A + G Sbjct: 361 ELKHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWR--------------------GD 400 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L ++ E ER + L+ T G K AA+ LG R TL RKLKE ++ Sbjct: 401 AGALESSRKETERQTIINVLKKTGGRKMAAAKALGISRETLWRKLKEYNVD 451 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 643 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 184/469 (39%), Positives = 272/469 (57%), Gaps = 28/469 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDDD R +L+ L G T +G EVL L D++L D++MP +DG Sbjct: 1 MKKILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH- 121 LA L + Q++ +PVI++TA S ++ A+ A ++GAFDY+ KP DID + +A+ Sbjct: 61 LATLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQK 120 Query: 122 -YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q + +IIGE+ MQ++F I ++ S ++L++GESGTGKELVA A Sbjct: 121 ISPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +HRHS R + I +N AA+ ++L+ESELFGHE GAFTGA ++G FE+AD GTLFLDE Sbjct: 181 IHRHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM L Q ++LRVL +G+F RVGG +KV+VRIIAA+H+NLE+ ++EG FR+DLF R Sbjct: 241 IGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+V+ +HLP LRER DIP LA FL + ++ + K E L WPGN+R+L Sbjct: 301 LSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIREL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN+ ++ G+++ +LP + F + S Sbjct: 361 ENSIERGVILCLGEQITAHELPPQFFRNRSPGELSS------------------------ 396 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++E+ + AL + +K A+ LG R TL K+++ G+E Sbjct: 397 --RDTLRDVEKRAIQQALARSGFNKSATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 643 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 182/472 (38%), Positives = 264/472 (55%), Gaps = 17/472 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 G + VVDD+ S+R L+ L G +G L L + D+L+SDIRMP +G Sbjct: 1 MGRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL Q +Q P LPV+++TA + D AV A + GAFDYL KPF +DE +V A+S Sbjct: 61 LELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSR 120 Query: 123 QEQQQ-----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ + V NG IIG +P M ++ +I R++ + +VLI+GESGTGKELV Sbjct: 121 RQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELV 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H+ SP + F+ + +AIP+ L ESELFGH KGAFTGA T R G FEQA+ GT F Sbjct: 181 ARAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ QT+LLRVL + + RVG ++++ R+I+AT+++LE+ V G+FREDL Sbjct: 241 LDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RL V+ + +PPLRER+ D+P L HFL +R G + + + L +PGNV Sbjct: 301 FYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNV 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN M Q +L + L + + + A + + Sbjct: 361 RELENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRG-------- 412 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A + ER ++ AL+ K AA LL +L K+K+ ++ Sbjct: 413 ----LEPALTDFERQMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKKYEID 460 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 643 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 191/464 (41%), Positives = 269/464 (57%), Gaps = 26/464 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + VVDDD S +L+ L G G +G E LE + D++L D+RM MD Sbjct: 4 EKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMAEMD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L++IK +P +PV+IMTA S ++ AV A + GA DYL KP D D +E++++H Sbjct: 64 GIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKSLAH 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 QE ++ + ++G++PAMQ + I ++ S +VLI+G+SGTGKELVA AL Sbjct: 124 AQEVA-GELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARAL 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R+ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEI Sbjct: 183 HASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD+ +Q RLLR + + + RVG + VDVR+IAATH++L Q G+FR+DL++RL Sbjct: 243 GDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + P LR+RREDIP LA HFLQ A K P+ L AWPGN+R+LE Sbjct: 303 NVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRELE 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V+ G+ + ++LP + + +Q Sbjct: 363 NAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAI----------------------- 399 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + E+E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 400 --QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 181/467 (38%), Positives = 273/467 (58%), Gaps = 19/467 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VVDD+ SI L L G +G E LE L TPD++L DI MPGMDG Sbjct: 2 KPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 LA+L++IK+ H LPVII++ H +++ AV A + GAFD++ KP ++ + ++ A+ + Sbjct: 62 LAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFH 121 Query: 123 QEQQQPRNVQLNG-PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + +++ + T+ + G + A++ + I R + ++ +VLI GE+GTGKEL A + Sbjct: 122 RLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMI 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H+ S R+ P + +N AAIP+DLIESELFGHEKGAFTGA+ R+GRF+ A+GGTLFLDEI Sbjct: 182 HQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L Q ++LR+L + F RVGG ++VDVR++AAT++++++ ++ G+FR+DL++RL Sbjct: 242 GDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRL 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + +PPLR+R +DIP L FL A E + K + P L + +WPGN+R+L Sbjct: 302 NVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELR 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + +M GQ + +DLP + Sbjct: 362 NFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGP------------------YQCAT 403 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L EA+ ER L L + A +G R+ L RK+K LG+ Sbjct: 404 LREARSVFERAYLLRKLDEFAWNVSLTAAQVGLERSHLHRKMKALGI 450 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 641 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 191/467 (40%), Positives = 268/467 (57%), Gaps = 28/467 (5%) Query: 1 MQRGIV--WVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M RG + VVDDD S +L+ L G G +G + L + K D++L D+RM Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 MDG+A LK+IK +P +P++IMTA S ++ AV A + GA DYL KP D D +E+A Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 119 ISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 ++H +E + +IG +PAMQ + I ++ S +VLI+G+SGTGKELVA Sbjct: 121 LAHTRETG-AELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH S R+ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFL Sbjct: 180 RALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ +Q RLLR + + + RVG + VDV +IAATH++L + V G+FR+DL+ Sbjct: 240 DEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ + +P LR+RREDIP LA HFL+ A K P+ L WPGN+R Sbjct: 300 YRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+ G+ + ++LP + + + S Sbjct: 360 ELENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEI-------------------- 399 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + ++E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 400 -----QPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 641 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 179/477 (37%), Positives = 287/477 (60%), Gaps = 19/477 (3%) Query: 1 MQ-RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M+ +GI+ +VDD+ +IR + L G + E LE + + PD++L D+R+P Sbjct: 1 MKPKGIILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPN 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 ++G+ L+++IK++ P +++MT + +D+AV + GA+DYL KPF +D ++VE+A+ Sbjct: 61 INGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKAL 120 Query: 120 SHYQEQQQPRNVQL------NGPTTDIIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGT 172 +Q+ ++ IIG +P M++++ +I ++++SS + VLI GESGT Sbjct: 121 RRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGT 180 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQA 231 GKELVA A+HR S R F+ +N AA+ + L+E+ELFG+EKGAFTGA T + G FE A Sbjct: 181 GKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIA 240 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 D GT+FLDEIG+M + +Q +LLR+L + QF RVGG +K+DVRIIA+T++NLE+ + G Sbjct: 241 DKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASG 300 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 FR+DL++RL V+ +++PPLRERREDI L ++F+ E G + P+TE L Sbjct: 301 NFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEY 360 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGN+R+L+N ++A G + + + +ES + + D ++ Sbjct: 361 GWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVS---- 416 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + + +E+ + L+ T + EAAR+LG R TL K+KE G+ Sbjct: 417 ------SDGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 182/473 (38%), Positives = 274/473 (57%), Gaps = 26/473 (5%) Query: 1 MQRGI--VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M + + V+DDD +R +L LA AG T +G E + L S++ +V+L+D++MP Sbjct: 1 MSQPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMP 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 G+ +L+Q +P V+++T H +++AV A ++GA+DY+ KPF+ DE + V+RA Sbjct: 61 HFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRA 120 Query: 119 ISHYQEQQQPRNVQLNGPT---TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 H + +Q+ R +Q +++GE+P ++ + +I +++ S +VLINGE+GTGKE Sbjct: 121 TEHARLRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A +H+ S R K PF+A+N A+P+ L+ESELFGH KGAFTGA+ + G FE D GT Sbjct: 181 LAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEI M L+ Q +LLRVL +G F +VGG P + DVR+IAA+ + L + V G FR Sbjct: 241 LFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRR 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + LPPLR+RREDIP LA HFL + + + + L +WPG Sbjct: 301 DLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + GQE+ + LP L + L Sbjct: 361 NVRELENAVERALLFCPGQELQAEHLPP---------------------LETGGEEAELH 399 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + S +E+ L+ AL+ GH+ + A LLG +L RK+K+ + Sbjct: 400 TTADDAKSLTMASMEKKLIIKALQRANGHRGKTAELLGISPASLWRKIKKYEI 452 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 640 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 183/468 (39%), Positives = 263/468 (56%), Gaps = 26/468 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VVDD+ + R L L+ G +G E L L P +L+D+RMP MDG Sbjct: 12 KERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDG 71 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL++ +++ ++MTA + ++AAV A + GA +YL KP D++ + ++E+A+ Sbjct: 72 INLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKL 131 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + Q+ N++ +I+G+AP + V+ ++ R + + +VLI GESGTGKEL A Sbjct: 132 RLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFA 191 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ALH SPRA FI +N AA+ + L+ESELFGHEKGAFTGA ++GRFE ADGGTLFL Sbjct: 192 QALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFL 251 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ +Q +LLRVL +F RVGG +KVDVR++AAT+++L V+ G+FREDL+ Sbjct: 252 DEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLY 311 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ V LPPLR+R+ DIP L HF+ ++ G + + L P T A+ WPGNVR Sbjct: 312 YRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVR 371 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+ G E+ DLP L E Sbjct: 372 ELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGA---------------- 415 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 E+ER + L G AA +LG + +LKE Sbjct: 416 ------TLYEIEREAILRTLEMVGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 197/479 (41%), Positives = 287/479 (59%), Gaps = 13/479 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+ +R +R LAG G G + ++ + + P++++ D+RMPGMDG Sbjct: 1 MAKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+ I++ LPV+IMTA+S + A+ A + GAFDY+ KPF+I + +AL+E+A+ Sbjct: 61 LTALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAG 120 Query: 123 QEQQQPRNVQLNGPT--------TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + + ++ +G ++G + AM V++ IGR + + VL+ GESGTGK Sbjct: 121 RRMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+++HS R + PF+ +N AIP L+ESELFG+EKGAFTGA R G+ EQA+GG Sbjct: 181 ELVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGG 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 T+FLDEIGDMPL +Q +LLR+L + Q R+GG P+ VDVRIIAAT+ +LE V +G+FR Sbjct: 241 TVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RL V+ + LPPLRER EDIP LAR+FL +RE+ + + PE A L WP Sbjct: 301 EDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L N+ V + G + DL L S S+ + Q + Sbjct: 361 GNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELI 420 Query: 415 R-----SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 R S N+ + R ++ AL T G++ AARLLG R TL K+++ G+ Sbjct: 421 RRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGL 479 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 170/471 (36%), Positives = 261/471 (55%), Gaps = 20/471 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDD+ IR L L+G G T NG ++ L + D++++D++M DG Sbjct: 1 MARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +LK++++ + PVII+TA +D+AV A + GA DY+ KPF ++ V + H Sbjct: 61 YDVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHG 120 Query: 123 QEQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ I+G + AM VF I + + + +++I GESGTGK L+A Sbjct: 121 SLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H++SPR PF+A+N AAIP+ L+ESELFG++KGAFTGAN+ + G ADGGTLFL Sbjct: 181 EAVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMP+ +Q+++L+VL G+ +G VD+RII+AT+++LE ++E FREDL+ Sbjct: 241 DEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +P LRERREDIP LA F++ K A+ WPGNVR Sbjct: 301 YRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+N + A G+++ +LP ++ S Sbjct: 361 ELKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVS----------------G 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + E+ ++ AL G K+ A+ LG TL RK+ +LG++ Sbjct: 405 LQPLKAMVYDYEKDIIINALNRFDGSKEMVAKTLGIDLTTLYRKMSKLGID 455 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 193/507 (38%), Positives = 290/507 (57%), Gaps = 42/507 (8%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASK-TPDVLLSDIRMPGM 60 + +VDDD IR+ L R L G T +G E +E + PD+++ D+RM G+ Sbjct: 6 NMSTILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGI 65 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ L+ ++ L +++MTA A+ A + GA+DY+ KPFD+D+ + + E+AIS Sbjct: 66 SGIETLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAIS 125 Query: 121 HYQEQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q+ + + I+G +PAMQ+VF++IG+++ S +VL+ GESGTGKEL Sbjct: 126 SSQDLKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKEL 185 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A +++HS R+ PF+A+N AAIP +LIESELFGHEKG+FTGA T R GRFEQ D GT+ Sbjct: 186 IAKCIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTI 245 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM L QT++LRVL +G+ RVGG +KVDVR+IAAT+++LE+ V++ +FRED Sbjct: 246 FLDEIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFRED 305 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV R+ +P L+ER+ED+P + LQ +E + P+ AL WPGN Sbjct: 306 LYYRLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGN 365 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVA------------------------- 391 VR+L N V+A G +L++DLP + Sbjct: 366 VRELGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEPQAS 425 Query: 392 ----ESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPE--------LERTLLTTALR 439 +S + AT + + +L + + L E + +ER ++ A+ Sbjct: 426 AAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAIG 485 Query: 440 HTQGHKQEAARLLGWGRNTLTRKLKEL 466 T G++ AA +LG RNTL ++L E Sbjct: 486 ETGGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 183/471 (38%), Positives = 282/471 (59%), Gaps = 31/471 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDD+ +R L L G +G +E L S+ +++ D++MPGMD Sbjct: 4 ETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMPGMD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +L+ K+ P L V+IMTA++ +D AV+A + GA+DYL KPFD +E ++++ +S Sbjct: 64 GLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKIVSQ 123 Query: 122 YQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ + ++ D++ ++PAMQ VF + +RS+ ++L+ GESG+GKE++ Sbjct: 124 QSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVL 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H SPRA PF+A++ AA+ + L+ESELFGHEKG+FTGA + R+G+FE A GGTLF Sbjct: 184 ARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTLF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+GD+ +Q LLRVL + +F+RVGG P++VDVRIIAAT+++L + EGKFREDL Sbjct: 244 LDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI + +PPLRERREDIP L +F++ + E+ + + P+ AL WPGNV Sbjct: 304 FYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N V+A G + + DL ++ + Sbjct: 364 RELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLA-------------------- 403 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+E+ + L H G+ ++AR+LG R TL K+++ G+ Sbjct: 404 -------SLEEVEKRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGL 447 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 192/470 (40%), Positives = 274/470 (58%), Gaps = 30/470 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V VVDD ++R L AG E+GA + + ++ DV+L+D+RMP +DG+ Sbjct: 29 GKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGM 88 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L+ ++Q P VI+MTA+ +++AV A ++GA+D+L KPF E + V +A+ + Sbjct: 89 EVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRR 148 Query: 124 EQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + I+G +PAM++V + R++ + +VL+ GESGTGKELVA Sbjct: 149 LLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVAR 208 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH S R+ PF+ +N AAI L+ESELFGH +GAFTGA R+G FE+A+GGTLF+D Sbjct: 209 ALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFID 268 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+ Q +LLR L +G+ RVG +PV+V+VRIIAAT+Q+L + + E +FREDLF+ Sbjct: 269 EIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFY 328 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPLRERRED+P LA HFLQ + G E ++L PE A+L WPGNVR+ Sbjct: 329 RLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWPGNVRE 387 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN + G+E+ D+ E A A G Sbjct: 388 LENIIEQAAALCTGREIRAADVQIE-------------------------ARAAPAGGAG 422 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L++A + ER +T AL AR LG TL RK+K LG+E Sbjct: 423 VTLADAVEDTERRAITAALARCGNDLGRVARDLGISGTTLWRKMKRLGIE 472 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 265/469 (56%), Gaps = 13/469 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + V+DD+ +IR + R L TF NG LE + + D++++D++MPG+ G+ Sbjct: 5 KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGM 64 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY- 122 +LK IK+ P LPVI +T +S +D+AV + GA DY+ KPF +E ++ + A+ Sbjct: 65 EVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRV 124 Query: 123 ---QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + ++ +G++ M V+R I +++ + +VLI GESGTGKELVA Sbjct: 125 VDLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVAR 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+HS R PF+A++ ++ ++L+ESELFGH KG+FTGA + G F+ A+GGTLFLD Sbjct: 185 AIHKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+ ++ L Q +LLRVL + + +GG P +++R++AAT+++L + V EG FREDLF Sbjct: 245 EVSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFF 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLN+I + LPPLRER DIP L H ++ A E+G + K + L ++PGNVR+ Sbjct: 305 RLNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVRE 364 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN V+A + DL S P S L+ + Sbjct: 365 LENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSV---------EELKETKR 415 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +L +A ++E+ + AL+ +G+ AA G R +K+LG+ Sbjct: 416 HLREQAVEDIEKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKKLGI 464 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 191/471 (40%), Positives = 280/471 (59%), Gaps = 18/471 (3%) Query: 1 MQRGI--VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M + VDD+ S+ +LE +L AG T +G E LE + ++ D +++D+ MP Sbjct: 1 MSDSTKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 MDGL LLK++++ LPVII+TA ++ +A+ A + GA DY+ +PFD+ E ++RA Sbjct: 61 RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRA 120 Query: 119 ISHYQEQQQPRNVQL-NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +S + + R ++ TT +IG +PAMQ + I +++ +VL+ GE+GTGKELV Sbjct: 121 LSFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELV 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H SPR A F+A+N AAIP +++ESELFGHEKGAFTGA R G+FE ADGGTLF Sbjct: 181 ARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ +MP+ +Q +LLR L + R+GG P+ VD+R++AAT++N +++GK REDL Sbjct: 241 LDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV R+ LP L+ R+ DI LA HFL + + L + WPGNV Sbjct: 301 YYRLNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQAVQVLMQYDWPGNV 353 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +++ Q++ Q LP E+ S AT L AD A Sbjct: 354 RELENVLERAAIISGNQQIQPQHLPAEMLNSNG--------EFIDATALGHNADTAEAPQ 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + L A +LER L+ AL T G+K +AA+LL +L KL + G+ Sbjct: 406 NPLCLPNAVEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQYGI 456 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 186/488 (38%), Positives = 266/488 (54%), Gaps = 23/488 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + VVDD+ ++R L AL+ +G T ENG LE + + PD++++DIRMP M Sbjct: 1 MGR-KILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +L+QIK R P LPV+I+T ++ ++ AV A +QGA DY+ KPF ++ V + Sbjct: 60 DGIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFK 119 Query: 121 HYQ---------EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 Q +IG + ++ S +VL+ GESG Sbjct: 120 QRQGEAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESG 179 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKE+ A +H S R PF+ALN AA+P+ L+ESELFGHEKGAFTGA ++G+FEQA Sbjct: 180 TGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQA 239 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTL LDEIG++PL +Q +LLRVL + + R+GG PVKVDV ++A T+++L V+EG Sbjct: 240 HGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREG 299 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 FREDLF+RLNVI + LP +RER EDI LA HF++ AK L + Sbjct: 300 NFREDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEY 359 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGNVR+LEN +++AG E+ D + A + + + + A Sbjct: 360 QWPGNVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAA 419 Query: 412 RALR-------------SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNT 458 L + + ++ER ++ ALR T ++ AA++LG T Sbjct: 420 ADLALAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRT 479 Query: 459 LTRKLKEL 466 L KL E Sbjct: 480 LRNKLNEY 487 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 180/471 (38%), Positives = 270/471 (57%), Gaps = 27/471 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M ++ +VDDD +R ++ LA G+ +GAE E + +T D++++D+ MP + Sbjct: 1 MPDPLILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQI 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL Q +P V+++T + +++AV A + GA+DYL KPF+ D+ + +V+RA+ Sbjct: 61 DGMELLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALV 120 Query: 121 HYQEQQQPRNVQLNG---PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q + R ++ +++G + M + +I R++ +VLI GE+GTGKEL Sbjct: 121 RLRLQDENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELA 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +HR S R F+ +N A+P+ L+ESELFGH +GAFTGA+ ++G E AD GTLF Sbjct: 181 ARMIHRLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI Q +LLRVL +G F RVG + P VD+R+IAA++ LE+ VQ G+FR DL Sbjct: 241 LDEINTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNV+ + LPPLRER DI LA +FL AR+ GV+ + PE +L WPGNV Sbjct: 301 FYRLNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNV 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +MA G E+ Q LP T S+S + Sbjct: 361 RELENIIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLP---------------- 404 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER + L+ T GH+ +A++LLG +L RK+K+ G+ Sbjct: 405 --------MAEVERRHIIRVLKATAGHRGKASKLLGISLASLWRKVKQYGL 447 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 176/470 (37%), Positives = 275/470 (58%), Gaps = 18/470 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD++ I ++R L+G G +G E + +A + D+ L D+ + DG Sbjct: 1 MEKILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +LK +K+ P L VII+T + +++AV + Q GAF Y+ KPF D +V+ A+ Sbjct: 61 IEVLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQ 120 Query: 123 QEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +++ R ++ N + IIG++ A Q++ + ++R +VLI GESGTGKE+VA Sbjct: 121 TLKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R + FIA+N A+IP L+ESELFGHEKGAFTGA+ ++G FE+A GT+FL Sbjct: 181 RAIHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG+M + +Q +LLRVL + RVG +++D R+IAAT++NL +R++E FREDLF Sbjct: 241 DEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV +++PPLRER DI LA +FL +R G + + + PE E + + AWPGNVR Sbjct: 301 YRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N + +M +G +L + LP E+ S A+ + Sbjct: 361 ELRNVIERICIMRSGPTLLPEHLPQEIR--------------STVAPPPLPAELPISIAA 406 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L EA +E++L+ AL+ T + + A L R TL K+++ G+ Sbjct: 407 DLGLEEAVSAIEKSLIQQALQKTGWNVLQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 185/476 (38%), Positives = 263/476 (55%), Gaps = 27/476 (5%) Query: 1 MQR----GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIR 56 M R + +++D+ R L AL + + + L ++ D++L+DIR Sbjct: 1 MNRENDFPKLLIIEDEKRTRMGLVMALGEE-FDTYEASDLSSAMAILENEPIDIVLADIR 59 Query: 57 MPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE 116 + G +L+++K + MTA+ ++ AV A + GA+DY+PKP D+++ ++ Sbjct: 60 LGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLK 119 Query: 117 RAISHYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGT 172 R + + + ++ IIG + AM+ VF I +++ S +VL+ GESGT Sbjct: 120 RIYQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGT 179 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD 232 GKELVAHA+H+ SPR PF+ ++ AA+ L+ESELFGHEKGAFTGA R GRFE+A Sbjct: 180 GKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAA 239 Query: 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 GTLFLDEIG++ L Q +LLR L + RVG V VDVR+IAAT++NLE+ V+EGK Sbjct: 240 RGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGK 299 Query: 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 FREDLF RLNV+R+ +PPLRER+EDIP LA+ FL A E G + L PE L Sbjct: 300 FREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYD 359 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADR 412 WPGNVR+L+ V+ G+E+ +DLP + S S Sbjct: 360 WPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFN----- 414 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E E+ L+ ALR QG K AA+ LG R TL RK+K+ + Sbjct: 415 -------------LKEAEKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFEL 457 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 197/469 (42%), Positives = 284/469 (60%), Gaps = 7/469 (1%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDDD +R ER LA G T +G + A+ PD+++ D+RMPG+ GL Sbjct: 6 AQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMPGISGL 65 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +++ P LPVIIMTA D A+ A + GA+DY+ KPFDI E + L+E+A++ + Sbjct: 66 EAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKAVAAGR 125 Query: 124 EQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + V G IIG + AMQD+++ IGR + + +VLI GESGTGKELVA Sbjct: 126 SMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+++HS RA PF+ +N AIP+ L+ESELFG+EKGAFTGA + G+ EQA+ GT+FLD Sbjct: 186 AVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRGTVFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPL +Q ++LR+L + R+GG + VDVRIIAAT+++LE V+ G+FREDL++ Sbjct: 246 EIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFREDLYY 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V+ + +PPLRER DIP L R+FL +RE+G + E A LT WPGNVR+ Sbjct: 306 RLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWPGNVRE 365 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L NT + + G + ++ E ++ P LA++ R L SG + Sbjct: 366 LGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADP---GDSLARYVRRELASGRE 422 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +L + ++ AL T G++ +AARLLG R TL K+++ G+ Sbjct: 423 SLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEKYGL 471 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 177/469 (37%), Positives = 278/469 (59%), Gaps = 3/469 (0%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDDD +R + L G + +G LEA+ K D+++ D++MPGM G Sbjct: 1 MSSILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS-- 120 L +I++ LPV++MTA+ + A+ A + GAFDY+ KPFDI + L+ +A+ Sbjct: 61 LEAFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAG 120 Query: 121 -HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + IIG +P MQ+V++ IGR++++ +VLI GESGTGKELVA Sbjct: 121 HMMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+++HS RA PF+ +N A+P+ L+ESELFG+EKGAFTGA + R G+ EQA+GGT+FLD Sbjct: 181 AIYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPL +Q ++LR+L + +GG A + VDVRI+AAT++NLE+ ++ FREDL++ Sbjct: 241 EIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V+ V+LPPLR+R D+ LA +F+ + ++E+ ++ L E + WPGNVR+ Sbjct: 301 RLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + + + G V +D+ + A + D + + G Sbjct: 361 LANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAGGDT 420 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L ++ AL+ T+G++ +AA+LLG R TL K+ +L + Sbjct: 421 ARFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDKLNL 469 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 176/467 (37%), Positives = 264/467 (56%), Gaps = 3/467 (0%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + V DD++ IR L G + + E L PD+ L D+ + DG Sbjct: 1 MTHILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L+ L++I + V++M+ H +D AV A + GA DY+ KPF +D + + A+ Sbjct: 61 LSYLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLR 120 Query: 123 QEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 +++ R ++ +++G++PA++ + ++ R++ + VLI GE+GTGKELVA +L Sbjct: 121 GLERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSL 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R PF+ +N AAIP+ LIESELFGHEKGAFTGA + R G+FEQA GG LFLDEI Sbjct: 181 HEGSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEI 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L Q R+LRVL + Q R+GG + VDVR++AAT+++L + +FREDLF+RL Sbjct: 241 GDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRL 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLRER DIP L HF+++ R+ G KL E AL WPGNVR+L+ Sbjct: 301 NVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGNVRELK 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG--HQ 419 NT L ++A G + ++DL + +T + + + SG Sbjct: 361 NTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPD 420 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L EA+ ER + L +G+ AA+ LG R +L R++++ Sbjct: 421 LPLREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQW 467 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 636 bits (1642), Expect = 0.0, Method: Composition-based stats. Identities = 182/470 (38%), Positives = 262/470 (55%), Gaps = 10/470 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDD+ S+R L+ L G + + G LE LA + D+L+SDIRMP +G Sbjct: 1 MKRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL + K+ P LPV+++TA + D AVSA + GA+DY+ KPF +DE +V A+S Sbjct: 61 LELLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSP 120 Query: 123 QEQQQ---PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q V IIG +P M+ ++ II R++ + +VLI GESGTGKELVA Sbjct: 121 QPLPAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+HR SP + F+ + +AIP+ L ESE+FGH KGAFTGA + R G FEQA+ GT FLD Sbjct: 181 AIHRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ +QT+LLRVL + + RVG ++ +R+I+AT+++LE+ V G+FREDLF+ Sbjct: 241 EIGELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL V+ + +PPLRER+ D+P L HFL AR + + L +PGNVR+ Sbjct: 301 RLAVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN M Q +L + L T++ +P+ + Sbjct: 361 LENIIERGVAMENSQIILPESL-------TLSGHRRSREPEPAGGTVDDKRQEIAEEVFS 413 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +LER ++ AL K AA LL +L K+K+ G++ Sbjct: 414 RGLEPTLADLEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKKYGID 463 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 179/468 (38%), Positives = 267/468 (57%), Gaps = 19/468 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + V DD+ IR ++ L G T NG E ++AL S PDV+L D +MP + G Sbjct: 2 KAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L++IK+ P V+ +TA + AV A ++GA+D++ KPFD D+ + V RA+ H Sbjct: 62 VEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHC 121 Query: 123 QEQQQPRNVQLNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + + ++++ T IIGE ++ V + R++ + +VLI+GESGTGKEL+A A Sbjct: 122 RMKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWA 181 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H S R PF+A+N AIP L+ESELFGHEKGAFT A + G FE+A+GGTLFLDE Sbjct: 182 IHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDE 241 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++PLD Q +LLRVL + + R+GG + V+VRI+AAT++NLE+ V+ GKFR DL +R Sbjct: 242 IGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYR 301 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV + LPPLRER+EDIP LA FL+ L + + + PE L WPGNVR L Sbjct: 302 LNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDL 361 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + ++ +++ LP + + T+ + + Sbjct: 362 ENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAE-----------------EDT 404 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + E+ + +AL+ ++ A L R TL K+K + Sbjct: 405 SLRDTNSLAEKARILSALQKHNYNRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 273/474 (57%), Gaps = 19/474 (4%) Query: 1 MQRGI-VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + ++DD+ + R + G CTT+E+ E LE + PD++++DI+MP Sbjct: 1 MSEDRHIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMPQ 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 DG +L++ K P VI++T ++ +D+AV A ++GA+DYL KPF I++ + +A+ Sbjct: 61 CDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKAL 120 Query: 120 SHYQEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 H ++ + ++ +IIG +QDVF IG++S S S+LI GESGTGKE Sbjct: 121 QHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 ++A A+H++S R+ PFI ++ A++P++L+ESELFG+E+GAFTGANT +QG E A GGT Sbjct: 181 VIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDE+G++ +Q +LLR L + RVGG + +D+R++AAT+++LE+ ++ +FRE Sbjct: 241 LFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++R+NVI + LP L ER++DIP L HF + ++++ + PE A+ AWPG Sbjct: 301 DLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L N ++ + V I DLP ++ Q +++ A+ Sbjct: 361 NIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDI----- 415 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E L L G+ +AA+ G R T+ R + + ++ Sbjct: 416 ---------CLKRFEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINKYDLQ 460 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 183/465 (39%), Positives = 265/465 (56%), Gaps = 13/465 (2%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + VVDD+ IR + L AG + G L A +K D++ DI +PG+DGL Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLT 74 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L + +R VI++TA ++ AV + GA DYL KPF DE + RA+S Sbjct: 75 MLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAM 134 Query: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 +++ ++ +++G++PAM + + + +++ + I+VL+ GESGTGKELVA ALH Sbjct: 135 RRENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQ 194 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 RA F+ +N A+ L+ESELFGH +GAFTGA ++G F ADGGTLFLDEIG++ Sbjct: 195 GARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGEL 254 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +Q +LLR L DG+ VGG P +VDVR++AAT+++L++ V +G FREDLF+RLNVI Sbjct: 255 PLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVI 314 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 + +P LRERRED+P LA+HF AAR + P L WPGNVRQLEN Sbjct: 315 TIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAI 374 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 V+AAG + I+D + +A ++ + A Sbjct: 375 ERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDL-------------L 421 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ELER + L G K +A+ +LG R TL +KL++ G+E Sbjct: 422 SLDELERLHILRVLEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 634 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 176/468 (37%), Positives = 271/468 (57%), Gaps = 23/468 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V ++DD+++IR L+ L G T +G + L +A+ D++L D +P +G+ + Sbjct: 22 VLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGIEI 81 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+I+ R + VI++TA+ ++ AV+A Q GA +++ KP+D ++ +A V AI+ + + Sbjct: 82 LKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRRVE 141 Query: 126 QQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ R ++ +IIG++ M +F ++ +++ S +VL+ GESGTGKEL+A A+ Sbjct: 142 EENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAI 201 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R F+ +N ++P DL+ES LFGH KGAFT A ++G FE ADGGTLFLDEI Sbjct: 202 HMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEI 261 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G M ++ Q ++LRVL D +F +GG ++VDVRIIAAT+ +L Q V+EGKFREDLF+RL Sbjct: 262 GTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRL 321 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLR+RR D+P L HF++ E + PE L W GNVR+LE Sbjct: 322 NVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELE 381 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V+A G + I LP + + S + +PD+ Sbjct: 382 NVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDA-------------------S 422 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E + ER ++ L ++ EAA +TL +K+K L +E Sbjct: 423 LFEIMEDCERRIIVDMLEKVGWNQTEAAEKFRIPLSTLNQKIKRLSIE 470 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 634 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 180/497 (36%), Positives = 267/497 (53%), Gaps = 32/497 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + VVDD+ ++R L AL+ G ENG LE + S+ PD++++DIRMP M Sbjct: 5 MGR-KILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEM 63 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+A+L+QI+ P LPV+I+T ++ ++ AV A +QGA DY+ KPF ++ +++ + Sbjct: 64 DGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMR 123 Query: 121 HYQEQQQPRNV---------QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 + + + +IG + ++ S +VL+ GESG Sbjct: 124 QQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESG 183 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKE+ A +H S R PF+ALN AA+P+ L+ESELFGHEKGAFTGA ++G+FE A Sbjct: 184 TGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELA 243 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTL LDEIG++PL +Q +LLRVL + + R+GG PVKVDV ++A T+++L + V++G Sbjct: 244 HGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDG 303 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 FR+DL++RLNVI + LP LRER +DI LA F++ +R K L Sbjct: 304 TFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFLDY 363 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGNVR++EN +++ G E+ + D + A S +P A A Sbjct: 364 DWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVDAA 423 Query: 412 RALRSGHQNLL----------------------SEAQPELERTLLTTALRHTQGHKQEAA 449 S + E+ER ++ ALR T ++ AA Sbjct: 424 EPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTHAA 483 Query: 450 RLLGWGRNTLTRKLKEL 466 ++LG TL KL E Sbjct: 484 KMLGISVRTLRNKLNEY 500 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 634 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 170/472 (36%), Positives = 261/472 (55%), Gaps = 10/472 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + VVDDD+S+R L L G T NG E L+ + +++D+RMPGM Sbjct: 3 MKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGM 62 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI- 119 G+ +LK IK+ P PVI++TA+ ++ AV A ++GA D++ KPF +++ +V+ + Sbjct: 63 GGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVMA 122 Query: 120 --SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ ++ +II E + + + +++S SVLI GESGTGKEL Sbjct: 123 TYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELF 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A L+ HS R PF+A+N AAIP +L+ESE+FG EKGAFTGA + G+FE A+GGTL Sbjct: 183 ARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGTLL 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ +M +Q +LLRV+ + + R+GG P+ VDVRIIA T+ ++ + ++E FREDL Sbjct: 243 LDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI + +PPLRER+ D+ L +FL+ + + T L WPGNV Sbjct: 303 YYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN ++ G VL + L E S + + SG Sbjct: 363 RELENVIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVSTDI-------SG 415 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+E+ L+ + L +G+K A+ +LG T+ KL+E M+ Sbjct: 416 IDLSRGMTIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQEYQMK 467 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 184/473 (38%), Positives = 265/473 (56%), Gaps = 24/473 (5%) Query: 1 MQRG----IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL-ASKTPDVLLSDI 55 M + + + DDD IR +L G E+G EVL + D+L+ D+ Sbjct: 1 MTKATEQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDV 60 Query: 56 RMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALV 115 RMPG DGL +L+Q+++ PVI+MTAH A+ A Q GA+DY+ KPFD++E +V Sbjct: 61 RMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVV 120 Query: 116 ERAISHYQEQQQPRNVQLNG--PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 +R H Q + R ++ P +IG +PAMQ++++ IGR++ + +VLI GE+GTG Sbjct: 121 KRLFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTG 180 Query: 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 KE++A+ +H +S R P + +N AA+P+ L+ESELFGHEKGAFTGA R+GRFE A Sbjct: 181 KEVLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHK 240 Query: 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 G++FLDEIG+M L Q +LLR+L + +F RVGG V+VDVR+IAAT+++LE V+ G F Sbjct: 241 GSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTF 300 Query: 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 REDL++RLNVI +HLP LR+R DIP LA FL + E L W Sbjct: 301 REDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDW 360 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 PGNVRQLE+ +++ G + + ++ A D A Sbjct: 361 PGNVRQLEHEIERAVILSRGNVITSEH-----------------MSLVPSSRSALQVDIA 403 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 R ++ L E ++ER L AL + AAR LG ++ K+ Sbjct: 404 ARLREKSTLEELLADVERLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 172/470 (36%), Positives = 261/470 (55%), Gaps = 25/470 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ R +L L+ G T + E + + P+++L+D+++ +G Sbjct: 1 MTTLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L + + VI++TA + +AV+A +QGAFDYL KP D + + + +A Sbjct: 61 IEILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERM 120 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 ++ ++ IIG++ M V I+ + + ++ +VLI GESGTGKEL+A Sbjct: 121 NLIKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H +SPR PFIA+N AAIP LIESELFG+E GAFTGANT + G E AD GTLFL Sbjct: 181 RAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEI ++PL Q++LLRVL D + ++G KVDVRIIAAT++NL ++V++ KFREDL+ Sbjct: 241 DEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL VI V +PPLRER+EDIP L F++ ++E G + + AL +WPGN+R Sbjct: 301 YRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LE+ ++ ++ D+ EL T PD Sbjct: 361 ELESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINY------------- 407 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELE+ L+ AL + +AARLLG +T +LK+ G+ Sbjct: 408 --------EELEKELIKKALIKSNFVIAKAARLLGMSYDTFWYRLKKFGL 449 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 633 bits (1633), Expect = e-180, Method: Composition-based stats. Identities = 179/472 (37%), Positives = 265/472 (56%), Gaps = 26/472 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + +V+DD + L L+ G + ++G + LE + D+++SD+++PGM Sbjct: 1 MGKYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +LK IKQ + +I+TA+ +D AVSA +QGA DY+ KPFD++E +VE+ + Sbjct: 61 DGMEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLE 120 Query: 121 HYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +Q +I+G + +M VF+ I R+ S +VLI GE+GTGKEL Sbjct: 121 KRGLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H +S RA P++ +N AA+ +DL+ SELFGH KGAFTGA ++G FE ADGGTL Sbjct: 181 VARAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGD+ +Q LR L G+ VG + V VRIIAAT++NLE V++G FR+D Sbjct: 241 FLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV+ + LPPLR+R+EDI LA HFL A + + + P L +WPGN Sbjct: 301 LYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN T+ QE+ LP + E L Sbjct: 361 VRELENIIERATLFELTQEITPDSLPQVVIEPC----------------------TVLDP 398 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ + + + R + L T +K +A++LLG R+TL R + L + Sbjct: 399 SPFSMETTSLEAVSRRHIVRILEMTNHNKTQASKLLGIDRSTLWRIMNRLKL 450 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 270/468 (57%), Gaps = 28/468 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + V+DD+ +IR L+ AL G T E+G +E D++++D++MP M G Sbjct: 2 KFSILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L+ + P +P+II+T H ++ AV A +GA+D+L KP D++ LV RA+ + Sbjct: 62 ELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNR 121 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + Q R + +I+GE+PAM VF ++ + + S SVLI GESG GKEL+A Sbjct: 122 ELIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIA 181 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +A+H SPR P I ++ A+ + ++ESELFGHE+GAFTGA +GRFE A G++FL Sbjct: 182 NAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFL 241 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ + VQ +LLRVL + F RVGG +KVDVR+I+AT++NL + ++ FREDL+ Sbjct: 242 DEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLY 301 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+ +H+P LRER+ED+P L FL+ A E G + + P+ ++AL WPGN+R Sbjct: 302 YRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIR 361 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 QL N +M++G + I+DL + S Sbjct: 362 QLRNCIESAVIMSSGPVIHIEDLSEPIRSLGETSS------------------------I 397 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + + + E+ ++ L +G+K + A +LG GR TL KL + Sbjct: 398 RIPIGVSMEDAEKEIILQTLEAQKGNKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 180/474 (37%), Positives = 269/474 (56%), Gaps = 23/474 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPG 59 M +++ DD+ I +++ L GL TF +G +L L D+LL D++MP Sbjct: 6 MSETRIFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPD 65 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 MDGL +L+++K+ P LPV+IMTA +DAAV A + GA+DY+ KPF ++ + ++E + Sbjct: 66 MDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLENVL 125 Query: 120 SHYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 +++ + ++ T I+ + ++V+ + ++ S ++LI GESGTGKE Sbjct: 126 ERELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTGKE 185 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L+A A+HRHS R +++N AA+ L+ES+LFGH +GAFTGA T ++G E+AD GT Sbjct: 186 LIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADSGT 245 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LF+DEIGDM L +Q +LLRV+ +G F VG KVD+R +AAT++NLE+ V EG+FRE Sbjct: 246 LFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRFRE 305 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNVI + LPPLRER+EDI LARHFL+ + + E E + +WPG Sbjct: 306 DLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSWPG 365 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+LEN ++A V LP +T S L+ Sbjct: 366 NIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLV--------- 416 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + +ER + L T HK A +LG R TL RK+ E G++ Sbjct: 417 ---------SLENVEREHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGLK 461 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 272/478 (56%), Gaps = 12/478 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +V+D+ +R +L+ L T N AE L + D+++ DIR+P Sbjct: 1 MSFEKILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG L+Q+ V+++T + +++AV + GAFDY+ KPF + ++++A + Sbjct: 61 DGQKFLEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQT 120 Query: 121 HYQEQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + Q + R + + + ++G +PAM + +II R++ + +VLI GESGTGKE+VA Sbjct: 121 YRQLLRVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +R SPR FI +N AAI ++LIESE FGHE+GAFTGA R+GRFE A GTL L Sbjct: 181 REFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+ ++P ++Q +LLRVL + +F RVGG +KV+VRIIA ++++L + V++G+FR+DL+ Sbjct: 241 DEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV VH+P LRER EDI LA HFL+ AR+ GV+ AAL WPGNVR Sbjct: 301 YRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVR 360 Query: 359 QLENTCRWLTVMAA-GQEVLI-------QDLPGELFESTVAESTSQMQPDSWATLLAQWA 410 +L+NT +++ G+ V LPGEL P + A Sbjct: 361 ELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGA 420 Query: 411 DRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + H +L ELE+ + ALR T G++ +AA LG TL KL+E + Sbjct: 421 SPTVTDSHGQVLK--LDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRL 476 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 631 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 180/472 (38%), Positives = 267/472 (56%), Gaps = 24/472 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + G + +VDD+ R +L+ L G E LE L + D++L+D++M G Sbjct: 6 KSGSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQS 65 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL+++ P VI+MTAH +D+AV A + GAFDYL KP + D V ++RA Sbjct: 66 GLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFER 125 Query: 122 YQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 ++ R +Q P ++G+ P M +VFR++ +++ ++ +VLI GESGTGKELV Sbjct: 126 IGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELV 185 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S R PF+A+N AAIP+ LIESELFGHEKG+FTGA+ G FE A+GGT+F Sbjct: 186 ARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVF 245 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+M + +Q +LLR + + + RVGG + +DVRII+AT++ LEQ ++ G FREDL Sbjct: 246 LDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDL 305 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVIR++LPPLRER D+ LA F++ + G++ + + L +WPGNV Sbjct: 306 YYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGNV 365 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLE+ +MA + DLP E+ +++ Sbjct: 366 RQLESVIERAVLMAESSVIEPGDLPAEITSTSLLAGVVPFDLPPEGID------------ 413 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LE+ L+ A+ +AA LLG TL +L++ +E Sbjct: 414 --------METLEKNLIIKAMERADWVIGKAAPLLGMSYKTLQYRLEKFAIE 457 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 193/489 (39%), Positives = 273/489 (55%), Gaps = 24/489 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V +VDD+ +I L ++L AG +G L+ ++++ D +L D++MP MDGL Sbjct: 3 ASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L ++ + P LPVI+M+ H +D AV A Q GA D+L KP + + + + H Sbjct: 63 TALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKHQA 122 Query: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 + + ++ D++G PAMQ +F +I R + S VLI GE+GTGKEL+A ALH+ Sbjct: 123 AMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALHQ 182 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 HS R PF+ LN AA+P +LIESELFGHEKGAFTGA ++R+G+FE A GTLFLDEIGD Sbjct: 183 HSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIGD 242 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 MP +Q +LLRVL +G+ RVGG KVDVR++AAT++NLE + G+FREDL++R+NV Sbjct: 243 MPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRINV 302 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 +++H PPLRERRED+P L + FL A + G L P+ A ++ +PGNVR+L N Sbjct: 303 VQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRNL 362 Query: 364 CRWLTVMAAGQEVLIQD----LPGELFESTVAE--------------------STSQMQP 399 L ++ G V D LP A S++ Sbjct: 363 VERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPAPA 422 Query: 400 DSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 + A R E + ER ++ L HT + EAARLL R Sbjct: 423 IAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERGHF 482 Query: 460 TRKLKELGM 468 +K+K LG+ Sbjct: 483 YKKMKALGL 491 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 176/467 (37%), Positives = 272/467 (58%), Gaps = 13/467 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V +VDD+ R L++AL + + + E + ++ DV+++D+RMPG GL Sbjct: 3 PSVLIVDDEKHTREGLQQALVDS-YDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGL 61 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 ++ + + V++MTA+ +++ AV A ++GA D+L KP +I+ L++RA+ Sbjct: 62 KVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKAKT 121 Query: 124 EQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + IIG +P + +V + ++ S ++LI GESGTGKEL+A Sbjct: 122 LEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIAQ 181 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+ S R++ PF+A++ AA+ ++L+ESELFGHE+G+FTGA R GRFE ADGGTLFLD Sbjct: 182 AIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFLD 241 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ Q +LLR L RVGG P+ +DVR++AAT++ LEQ V++GKFREDLF Sbjct: 242 EIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFF 301 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+R+ +PPLRER ED+P L H++ + E GV + P A L WPGN+R+ Sbjct: 302 RLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNIRE 361 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N C V+ G+ + DL ++T+A +T + G Sbjct: 362 LRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPG--------STVLGGA 413 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 S + E E+ LL AL ++G++ +AA L+G R TL RK+ + Sbjct: 414 VPTSFSVEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQW 460 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 259/470 (55%), Gaps = 17/470 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V +V+D+ L ++ T +G E LE + P ++++D++MP M Sbjct: 22 MSQEKVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPRM 81 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL+++ Q VI++TA +++AV A + GAFDYL KP D ++ Sbjct: 82 DGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNVSR 141 Query: 121 HYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q++ ++ ++G + M+DVF +I R++ +++SVLI GESGTGKEL Sbjct: 142 QLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKEL 201 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA LH SPR PF+A+N AAIP+ LIESE+FGHEKGAFTGA R G FE A+ GTL Sbjct: 202 VAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTL 261 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIG+MP+ Q +LLRVL D ++ R+G +DVR++AAT++N +Q V +G+ R D Sbjct: 262 LLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGD 321 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNV +H+PPLRE +EDIP +A+ + + + + E +A L WPGN Sbjct: 322 LYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPGN 381 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L NT ++ G + Q LP + ++ + + + Sbjct: 382 VRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVE-------- 433 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + E ER L+ L T +K AA +LG TL KLKE Sbjct: 434 -----VGTTVDEAERLLILKTLESTHNNKTRAAEILGISLKTLHNKLKEY 478 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 177/474 (37%), Positives = 266/474 (56%), Gaps = 21/474 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG- 59 M R + VVDD+ R VL AL G T +G E L + +++ D+++PG Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGS 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DGL LL++ K+ + ++IMTA+ +D AV A ++GAF+Y+ KPF IDE + +ER I Sbjct: 61 IDGLELLQRAKEMN-NASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMI 119 Query: 120 SHYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + ++ ++ IIG + +Q V +I R++ SS +VLI GESGTGKE Sbjct: 120 EQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGKE 179 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H + R F+ +N A + + L+ESELFGH +GAFTGA ++G FE+ADGGT Sbjct: 180 LVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGGT 239 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LF+DEIGD+P VQ ++LRVL +G+F +G VDVRIIAAT+Q+L ++V++ +FRE Sbjct: 240 LFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFRE 299 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNVI + +PPLRER+EDIP L +HF++ ++ + K L PETE L + WPG Sbjct: 300 DLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + + + + + + D L Sbjct: 360 NVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNN---------------MLLDDLLS 404 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ +A + + G+ AAR R L R LK+ ++ Sbjct: 405 HPYKEARKKALDVFNTKYVMNIINKNSGNVTNAARECKIERQYLQRMLKKYAIK 458 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 188/469 (40%), Positives = 268/469 (57%), Gaps = 20/469 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + V+DD+ IR L + L G T GAE + S P ++ D++M G+ Sbjct: 1 MTR-RILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGL 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL +LK+++Q P V++++ H+ + AV A Q GA+D L KP D D + L+ A + Sbjct: 60 DGLEVLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFT 119 Query: 121 HYQEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + Q ++ ++ +I+G + ++ + I R++ + VLI GE+GTGKELVA Sbjct: 120 NRQLTEENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVAR 179 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+HR S RA+ PFI +N AAIP +LIESELFGH KG+FTGA R G+FEQA GGTLFLD Sbjct: 180 AIHRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLD 239 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDM Q ++LRVL DG R+GG PV+VDVR++AAT+++LE+ + G+FREDL++ Sbjct: 240 EIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYY 299 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +P LRERREDIP L RHFLQ A G+ A+ + E L+ L WPGNVR+ Sbjct: 300 RLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVRE 359 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L NT L ++A+ + + D+ D A Sbjct: 360 LRNTMERLVILASAASISVADI------------------DRLAGRRTAEPSGIGSLLDC 401 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 N E + ER L LR + E AR L R+ L +K++ + Sbjct: 402 NTFEEFKQAAERAFLLAKLRAFDWNVSETARALDMPRSNLYKKIERYAL 450 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 628 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 209/466 (44%), Positives = 285/466 (61%), Gaps = 6/466 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 RG V +VDDD ++ VL L AGLT +G E L LASK DV++SD+RMPGMDG Sbjct: 6 RGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPGMDG 65 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L ++ + P +PVI++TAH + AV A + GA D++ KPFD +E + V +A+ Sbjct: 66 LQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLRA 125 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 Q ++ + V+ PT IG + AM DV ++ + + + +VL+ GESGTGKEL A A+H Sbjct: 126 QGEEARQQVR---PTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 SPR PF+ L+ AA+P L+ESELFG+EKGAFTGA T + GR E A GGTLFLDE+G Sbjct: 183 DASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 D+ VQ +LLRV+ + + R+GG VKVDVR +AATHQ LE+RV+EG+FREDLF+RLN Sbjct: 243 DISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLN 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V+ V +P LRER +DI LA HFL+V A+ G L + AAL WPGNVRQL+N Sbjct: 303 VVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVRQLQN 362 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 L V++ Q + +++ EL S + L A + L Sbjct: 363 FLERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVP---VTDSARTL 419 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+ER + AL+ ++ AARLLG R TL KL+E G+ Sbjct: 420 ESQRKEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 169/473 (35%), Positives = 271/473 (57%), Gaps = 6/473 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDD+ +RW L + G +NG+ L ++PD++L D+R+P M Sbjct: 1 MPSEKILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL +LKQ+K+ VI++TA L+ A + GA+D++ KP D DE V+ A+ Sbjct: 61 GGLEILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNALE 120 Query: 121 HYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGTGKE 175 + + + +++ DI+G + M ++ + +++ S + +L+ GESGTGK+ Sbjct: 121 TTRLRTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKD 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H S R + PF+A+N +AIP+ L+E+ELFGHEKGAFT A +++G FE ADGGT Sbjct: 181 LVAKAIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEIG++ +Q +LLRVL D RVGG ++VDVR+IAA++++LE+ V++G FR+ Sbjct: 241 LFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQ 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RL +I V LPPLR+R+EDI L F++ R+ + + T L + WPG Sbjct: 301 DLYYRLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L+N ++ + + LP + + + + A + R+L Sbjct: 361 NVRELKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPP-APIQQLPNGRSLP 419 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+ER + A++ G++ AARLL R+ L KLK+ G+ Sbjct: 420 RLVIPEGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 175/458 (38%), Positives = 274/458 (59%), Gaps = 6/458 (1%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDD+ + + +R L + + ++G E L+ L ++ DV++ DIRM GL Sbjct: 21 QSILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGL 80 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LK+I++ P V+IMTA+ A+ A + GA+DY+ KPF++ E +++ +A+ + Sbjct: 81 ETLKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASK 140 Query: 124 EQQQPRNVQL-----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 ++ + + + IIG++ MQ V+++IG+++ ++ +VLI GESG+GKELVA Sbjct: 141 LTKEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVA 200 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A++++S RA PFIA+N AAIP++L+ESELFGHE+G+FTGA R G+FEQ DGGT+FL Sbjct: 201 RAIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFL 260 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG+MP+ Q ++LRVL +G+F R+G P+K DVRIIAAT+++L V + +FR DLF Sbjct: 261 DEIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLF 320 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+++ LPPLRER EDIP L HFL R L + + +L WPGN+R Sbjct: 321 YRLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIR 380 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP-DSWATLLAQWADRALRSG 417 +LEN + V+A + LP E+ + + + A L + S Sbjct: 381 ELENVIQRAMVLATSATIQNCHLPEEIQAAEKKKYFKEKSGKGGPAGGLDFLVQEIVGSD 440 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWG 455 ++ E L + T L +G + +A R+LG+ Sbjct: 441 LRDHRLETLKSLLHRIYTQVLEECEGDESKAKRILGFH 478 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 184/455 (40%), Positives = 260/455 (57%), Gaps = 18/455 (3%) Query: 17 WVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPML 76 + + L G ++ E L A T DV++ DI+MP + G+ LL+ IK P + Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDV 79 Query: 77 PVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVERAISHYQEQQQPRNVQL-- 133 VI+MTA + ++ AV A + GA+DYL KPF +IDE V +A + + R ++ Sbjct: 80 EVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEAL 139 Query: 134 --NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAP 191 D+IG++ M+ VF+++ +S S+ +VLI GESGTGKELVA A+H S R P Sbjct: 140 TVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKP 199 Query: 192 FIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTR 251 F+A+N +A+ + L+ESELFGH KG+FTGA ++G FE ADGGT+FLDEIGD+P Q R Sbjct: 200 FVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVR 259 Query: 252 LLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPL 311 LLRVL +G+ RVG PVKVDVR+IAATH +L + ++GKFREDLF+RLNVI + LPPL Sbjct: 260 LLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPL 319 Query: 312 RERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 R+R ED+P LA HFL++ A + + + P ALT W GNVR+LEN V+ Sbjct: 320 RDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLT 379 Query: 372 AGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELER 431 + + ++DLP + +ST ++ + A ER Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAK-------------RLAMRAFER 426 Query: 432 TLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L+ L + AAR G R+ R LK+ Sbjct: 427 RYLSALLEKNNQNVSSAARAAGVDRSNFRRLLKQY 461 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 166/465 (35%), Positives = 259/465 (55%), Gaps = 7/465 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + +VDDD ++R + + G++ +G E E + D+++SD+RMP +D Sbjct: 4 TSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPNVD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ ++ I+ P+ +TA ++ AV A + GA+DY+ KPF + LV R + Sbjct: 64 GMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVLEI 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + + I + M +F + ++ S +VLI GESGTGKE+ A + Sbjct: 124 EETAPAVKRKKNTA-----IFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYI 178 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R+ F+A+N AA+P++L+ESELFG+EKGAFTGA + G+FE ADGGT+ LDE+ Sbjct: 179 HENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDEL 238 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++PL +Q +LLRVL + + R+GG P K++VRI+A T++ L++ V EG FREDL++RL Sbjct: 239 GEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRL 298 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLRER+EDI LA F + A+ G + + + AL WPGNVR+LE Sbjct: 299 NVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELE 358 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 +T V+ + ++L L T+ + + Q + A Sbjct: 359 HTIERAVVLCRDGVISERNL--FLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGID 416 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + E+ER L+ L+ T G++ +AA +LG TL KL E Sbjct: 417 FAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEY 461 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 626 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 167/471 (35%), Positives = 257/471 (54%), Gaps = 23/471 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M G + +V+DD S+R V+ L G ++ E L + ++++D+ +PGM Sbjct: 1 MSSGRILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL LLK+++ +P VI+MTA + AV A + GA+D+L KP E LV R + Sbjct: 61 SGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLE 120 Query: 121 HYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H++ ++ + ++ I+G + + + R++ + ++LI GE+GTGKEL Sbjct: 121 HHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R PFI +N AIPK+L+ESELFGH KG+FTGA T ++G+ E ADGGT+ Sbjct: 181 VAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGGTV 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIG+MPL++Q R+LR++ + + +VG +P KVDVRI+AATH+ L V+ G FRED Sbjct: 241 LLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL V+ ++LPPLRER DI L +HFL+ + ++ + T +WPGN Sbjct: 301 LYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQLEN L ++A + DLP L + + Sbjct: 361 VRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGIN---------- 410 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 +LE+ L+ AL+ G++ AA+ L R +L++ Sbjct: 411 ---------LEDLEKDLILQALKKYAGNQTRAAQYLNMSRRAFAYRLEKYD 452 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 190/469 (40%), Positives = 267/469 (56%), Gaps = 15/469 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VVDD+ ++ LE L G + ++ + LA + DV L DI+MP + GL Sbjct: 11 RVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLSGLE 70 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVA-LVERAISHYQ 123 LL +K R P + VI+MT H+ ++ A++A + GA+DYL KPF+ E VA V +A Sbjct: 71 LLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAERKM 130 Query: 124 EQQQPRNV------QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + R + + G ++G + +++V R+I ++ S+ +VL+ GESGTGKELV Sbjct: 131 LFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKELV 190 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH SPR PF+ALN A+ + L+ESELFGH KGAFTGA ++G F+ ADGGT+F Sbjct: 191 ARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGTIF 250 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGD+P Q RLLRVL +G+ RVG V+VDVR+IAATH++L + V+ GKFREDL Sbjct: 251 LDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFREDL 310 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI + LP LR+R +D+P LA HFL+ A LG + L P+ L WPGNV Sbjct: 311 FYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWPGNV 370 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V+ G+ V DLP + T + P L Sbjct: 371 RELENAIERAVVLCRGEAVTGGDLPPAV--------TGRTAPLVREAPAGGDEAVWLTMS 422 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + ++ E+ + T +RH + AAR G R+ R L++ Sbjct: 423 YATAKEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKY 471 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 271/465 (58%), Positives = 328/465 (70%), Gaps = 6/465 (1%) Query: 1 MQRG-IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + +W++DDD SIRWVL +A +G FE E+ AL SK PD ++SDIRMPG Sbjct: 1 MSQAQHLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 DGLALLKQIKQR P LP++IMTAHSDLD AVSA++ GAF+YL KPFDI+EA +V +A+ Sbjct: 61 TDGLALLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKAM 120 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +H + V DIIGE+ MQDVFR IGRLS SS+SVLI GE+GTGKE VA Sbjct: 121 AHR--SKPEVRVSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVAR 178 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH+HSPR+ PFIALNMAAIP DL+ESELFGHE+GAFTGA+ R GRF QADGGTLFLD Sbjct: 179 ALHKHSPRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLD 238 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDMPL VQTRLLRVLA+GQFY VG + PV+V+VR+IAATH++L++ V +FREDL+H Sbjct: 239 EIGDMPLSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYH 298 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNVI++ LP LRER++DIP LAR+FL+ +A EL V K L A L WPGNVRQ Sbjct: 299 RLNVIQLRLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQ 358 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN CRWLTVMA Q+V +LP EL E + Q + L + + + Sbjct: 359 LENVCRWLTVMAPAQQVSPDELPHELLEQSEQLENGQSTGNWRELLAHELRTQTHNYDNM 418 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + ++ER L AL GHKQ+AA LGWGRNTLTRKLK Sbjct: 419 TPI---IQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLK 460 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 625 bits (1614), Expect = e-178, Method: Composition-based stats. Identities = 184/477 (38%), Positives = 276/477 (57%), Gaps = 29/477 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + DD ++R + AL+ G GAE + A K DV+++D+RM +D Sbjct: 27 PMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVPVD 86 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ +++++++ P V++++AH + AV A ++GA D++ KPF D A VE++I Sbjct: 87 GIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEI 146 Query: 122 YQEQQQPRNVQL----------NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 +E++ R + ++G + M+ V + +++ + +VL+ GESG Sbjct: 147 ARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESG 206 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 TGKELVA A+H SPR + PF++++ AAIP+ L+ESELFGHEKGAFTGA + GRFE A Sbjct: 207 TGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELA 266 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 +GGTLFLDE+G++P VQ +LLRVL + QF RVGG V+VDVR+++AT++NL Q V+ G Sbjct: 267 NGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESG 326 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 +FREDL++RLNV+ + LPPLR+R D+ LAR F+ A + L PE L R Sbjct: 327 RFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRH 386 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGNVR+LEN V A G+ V +DLP + ++ A S D Sbjct: 387 RWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPVPSGD----------- 435 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L++ +LER L+ A +G K E ARLLG + L KL++ G+ Sbjct: 436 --------RSLTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verrucomicrobia RepID=B5JMF6_9BACT Length = 518 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 265/507 (52%), Gaps = 41/507 (8%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + ++DD+ IR LE L + + +E E L+ D+L D+ +P Sbjct: 1 MSLERILILDDELVIRKALEEQLRRKRFSVCSVGTLSEADEHLSKDEYDLLFVDVHLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G LL+++ V+I+T + +++AV Q GAFDY+ KPF + L+++A Sbjct: 61 NGTELLERVSSMQNPPLVVIITGYGTVESAVKCMQAGAFDYIIKPFSSSQIDVLIKKARD 120 Query: 121 HYQEQQQPRNVQLNGP-TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + Q + + + + ++IG++ + + +I +++ + +VLI GE+GTGKELVA+ Sbjct: 121 YRQLVRVNQFLASESTVSGELIGKSGFINQLKDVIRKVAPTEATVLICGENGTGKELVAN 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 L+R S R APFI +N AAI + LIESE FGHEKGA+TGA R+GRFE ADGGT+ LD Sbjct: 181 ELYRCSARKSAPFIRVNCAAISESLIESEFFGHEKGAYTGATQRREGRFELADGGTILLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI ++ VQ +LLRVL + +F RVGG +KVDVR+IA T++NL Q V+ G FR+DL++ Sbjct: 241 EISEISPKVQAKLLRVLQEREFERVGGNKTIKVDVRVIATTNRNLAQSVERGMFRQDLYY 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV + +PPLR+R D+ LA++F Q R+ G + K PE AL R WPGNVR+ Sbjct: 301 RLNVFPIQVPPLRDRDGDVVLLAKNFAQSFGRKHGKQIKGFAPEAVEALERHPWPGNVRE 360 Query: 360 LENTCRWLTVMAA-GQEVLIQDL--------------------------------PGELF 386 L+NT ++A GQ + L P + Sbjct: 361 LQNTVERAVILAESGQPIAQGHLGLFAMPTNVMAPPAGHPYPPVEAAGAAYGGGYPPQSA 420 Query: 387 ESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA-------QPELERTLLTTALR 439 V + P ++Q A + + E+E+ + L Sbjct: 421 PPPVNGGFYEAPPAMPPQPVSQSVPAASQPSSASGSETTTVAPPLPLEEIEKKHILATLE 480 Query: 440 HTQGHKQEAARLLGWGRNTLTRKLKEL 466 T G++ +AA+LLG TL K+ Sbjct: 481 TTDGNRTQAAKLLGISIRTLRNKISAY 507 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 166/470 (35%), Positives = 268/470 (57%), Gaps = 16/470 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + VVDD+ S+R +L+ L+ G E+G + L L D++L D+R+ M G Sbjct: 5 KANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLGDMSG 64 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +LK K+ + VI+++A++ + AV+A +GA+D++PKP D E + R++S Sbjct: 65 IDVLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRSLSLR 124 Query: 123 QEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 +Q+ + + + I+G P M+ ++ ++ +++++ +LI GESGTGKEL+A Sbjct: 125 TVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIA 184 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S RA PF+ +N IP++L+ESELFGH KG+FTGA ++G F A GT+FL Sbjct: 185 RAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFL 244 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++ + +Q +LLRV+ DG F +VGG + VD RI++AT++NL Q V +G FREDLF Sbjct: 245 DEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLF 304 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI +++PPLRER+ DI LA+ F++ +++LG E L L + ++PGNVR Sbjct: 305 YRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFPGNVR 364 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN ++ +L + L + + W + Sbjct: 365 ELENLIERSVALSTTNIILPESLSLAVHKRR------------WIEGVPGRRFDLEEVTK 412 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E ++ER L AL + G+K AA LLG + +L +L + Sbjct: 413 GVALDEILADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDKLNV 462 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 177/463 (38%), Positives = 251/463 (54%), Gaps = 18/463 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + + DDD R + L+ G +G + L+ + ++++DI MP + Sbjct: 1 METPKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRV 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +GL +KQ+K P + I +A ++ + + + GAF YL KPF+++E V+R + Sbjct: 61 NGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 121 HYQEQQQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H Q + ++ +IIGE+ M +F +I +++ S +VLI GESGTGKEL Sbjct: 121 HQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S R+ F+ALN AAIP +L+ESELFGH KG+FTGA R GRFE AD GTL Sbjct: 181 VARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM ++Q +LLRVL + VG KVDVRIIAAT+QNL+ V +FRED Sbjct: 241 FLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+VI + LPPLRER D+P L FL+ R + + + L+ WPGN Sbjct: 301 LYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN L ++ + I DLP + T + Sbjct: 361 VRELENLVERLVIIKTTGVISIHDLPEKYRGGR--------------TTTVLHGEPMTLP 406 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 L+ A E E L+ AL + G+K+EAA LL R TL Sbjct: 407 DDGFCLNSAVEEFENRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 624 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 199/471 (42%), Positives = 278/471 (59%), Gaps = 16/471 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + V DD+ SIR +L L G G +G + L+ LA++ DVLL D+RMP DGL Sbjct: 6 TILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLV 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L++ HP L ++M+A+ + A+ A GAFDY+ KPF DE V ++ +A + Sbjct: 66 VLREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERL 125 Query: 125 QQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ R ++ P I+GE+PA+ + R + RL+ +VLI+GESGTGKEL+A Sbjct: 126 VRENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARE 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH SPRA F+A+N AIP LIESELFGH KGAFT A T ++G F +ADGGTLFLDE Sbjct: 186 LHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G++PL Q +LLRVL +G+ VG KV+VR++AAT ++L + V +G FREDL++R Sbjct: 246 VGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK--LLHPETEAALTRLAWPGNVR 358 LNV+ + +PPLRERRED+P LAR F+ REL E L E EA L AWPGNVR Sbjct: 306 LNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVR 365 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN ++A +L +LP L+ ++ + D L+ G Sbjct: 366 ELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKP----------HGDPVLQGGG 415 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A ELE + + ALR T+G++ AA LL L K+KE G++ Sbjct: 416 DLSLKRAIRELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGID 466 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 624 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 183/465 (39%), Positives = 276/465 (59%), Gaps = 29/465 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ +V V DD+ SIR +++ L+ L T +G E L+ ++ D L DIRMP +D Sbjct: 17 EKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPKVD 76 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GLA+L+Q+ +PVI++TA+ D + A ++GA+D++ KPFDID+ V +A+ + Sbjct: 77 GLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKALDY 134 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + ++ ++G + AMQ+V+++IGR++ + ++VLI GESGTGKELV+ A+ Sbjct: 135 SKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAI 194 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +SPR K PF+ +N AAIP+DL+ESELFG+EKGAFTGA+ + G+FE A+ GT+ LDEI Sbjct: 195 HYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEI 254 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM +Q ++LRVL + R+GG + VDVR++AAT+++L+ V+ G FREDL+ RL Sbjct: 255 GDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRL 314 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+++ LPPLRER+EDIP LA HF++ A E E + PE AAL +PGNVR+LE Sbjct: 315 NVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRELE 374 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + +G+ + + LP ++ E A Sbjct: 375 NIIARAVALCSGKVLTLDVLPPQVVEPKPAL---------------------------RP 407 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L E E ER A+ Q A LL + ++LKE Sbjct: 408 LKEVLLEAERRAFRQAVAVAGLDPQAVADLLQVDLDYAKKRLKEW 452 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 199/472 (42%), Positives = 275/472 (58%), Gaps = 14/472 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V ++DD+ I + L+ AL T + L +A + PD ++ D+R+P M G Sbjct: 1 MPKVLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L I++ P LPVI++TAH + A+ A ++GAF+YL KP D+ + ++ RA Sbjct: 61 LDAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMR 120 Query: 123 QEQQQPRN------VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q P + + T I+G+ PAM DV++ IGR++ + VLI GESGTGKEL Sbjct: 121 LAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA AL+ HSPR+ PF+A+N AAIP L+ESELFGHEKGAFTGA+ R G+FEQA GGT+ Sbjct: 181 VARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTV 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDMP Q ++LR+L D +F RVGG V+ DVR+IAAT+++L V++ KFRED Sbjct: 241 FLDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L +RLN V LPPLR+R DI L HF+ A R+L + + A L WPGN Sbjct: 301 LLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L+N R+ V A G+ + LP L + P A L LR Sbjct: 361 VRELQNAMRYAVVQAVGEVITPDCLPASLRGAAA--------PPGDALELTALITSLLRV 412 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 G ++ + ++R LLT L H G++++AA LG R TL KL+ LG+ Sbjct: 413 GATDIYRQVTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 260/473 (54%), Gaps = 29/473 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M V +VDD+ + L AL G F + LEA+ + DV+ SD+R+P M Sbjct: 1 MLLLRVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL +IK P V+I+T + + A+ A ++GAF Y+ KP + E A+ RA Sbjct: 61 DGLELLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQE 120 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + ++ + I+G +PA+QD+F ++ +++ +VLI GESGTGK L Sbjct: 121 KIGMRMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKAL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA ALH SPR PF+ N ++LI SELFG+EKGAFTGA+ + G E A GGT+ Sbjct: 181 VALALHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTV 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE+G+MPL +Q RLL VL + + RVGG PV +D+R+IAAT+++L+ V++G FRED Sbjct: 241 FLDEVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF RLNV+ LP L +RREDIP L RHF+ + + + AAL ++PGN Sbjct: 301 LFFRLNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + GQ + + DLP ++ A P Sbjct: 361 VRELENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLP----------------- 403 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+ER + L T +K+ AA++LG R TL RKLKE G+E Sbjct: 404 --------TLAEVERRYVIRILEKTGYNKRLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 176/471 (37%), Positives = 282/471 (59%), Gaps = 17/471 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGA-GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 G + +VDD+ + +L R L+ T+ ++ +V E L D++++D+RMPG DG Sbjct: 3 GKILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRDG 62 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +++ +KQ++P VIIMTA+ +++A+ A ++GAFDY+ KPF + + +V++A+ Sbjct: 63 LGVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKWQ 122 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q Q++ ++ +IG + AM+ + I R++++S +VLI GESGTGKELVA Sbjct: 123 QLQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELVA 182 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 LH+HS R FI LN + +P+ +IESELFGH +G+FTGA ++G E+A+ GTLFL Sbjct: 183 RELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTLFL 242 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ + +Q +LLR+L +G++ +G +VD+R IAAT+QNL ++++ G+FREDLF Sbjct: 243 DEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFREDLF 302 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI + +PPLRER +DIP L FL+ K + P T AL + WPGNVR Sbjct: 303 YRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGNVR 362 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LENT +MA+G + +D+ E+ +E+ + D ++ + D Sbjct: 363 ELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKD------- 415 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E + ++ AL G+ +AAR G R L R ++E ++ Sbjct: 416 -----KLIEEFQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRETNVD 461 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 176/472 (37%), Positives = 267/472 (56%), Gaps = 18/472 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 Q + +V+D+ R +L+ AL +G T N EA+ D+ L D+R+P + Sbjct: 3 QSAFILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L+++ + P + +IIMT ++++D AV A + GA D+L KPFDIDE + ++ I Sbjct: 63 GIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKT 122 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q + +N++ T +IG+ PA+Q + + L+ S +VLI GESG GKE++ Sbjct: 123 RQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVL 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH+ R+ P +++N AIP++L+ESELFGH KGAFTGA R GRFE A+GGT+F Sbjct: 183 AKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM +Q +LLRVL + F VG + VDVR+IAATH++LE + G+FREDL Sbjct: 243 LDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVI + LPPLRER +DI L HF+ ++ + + E + + WPGNV Sbjct: 303 YYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N +T + + ++DLP + + Q + + Sbjct: 363 RELQNLIERVTTLKRHGIMELEDLPSRMISDKER--------------VLQSFRMDVENA 408 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E E L+ +AL+ Q +K +AA L R TL K+K+ G++ Sbjct: 409 ECIDLKSTVDEFESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGLQ 460 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 182/463 (39%), Positives = 253/463 (54%), Gaps = 20/463 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + DDD R + L+ G +G + LE + ++++DI MP + Sbjct: 1 MDSARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRV 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +GL +K++K P + I +A ++ + + + GAF YL KPF+++E V+R + Sbjct: 61 NGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 121 HYQEQQQPRN----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H Q+Q ++ +IIGE+ M +F +I +++ S +VLI GESGTGKEL Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H S RA F+ +N AAIP DL+ESELFGH KG+FTGA R GRFE AD GTL Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM ++Q +LLRVL + + VG KVDVRIIAAT+QNLE V FRED Sbjct: 241 FLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+VI + LPPLRER+ DIP L +FL+ R + + T L WPGN Sbjct: 301 LYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN L ++ + QDLP + A + +R Sbjct: 361 VRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKS----------------ERLTLP 404 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTL 459 L+ A + E L+ AL T G+K+EAA LL R TL Sbjct: 405 DTGFCLNSAVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 190/471 (40%), Positives = 267/471 (56%), Gaps = 10/471 (2%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 RG + VVDD ++R L T G E L LAS + D+LL+D++M MD Sbjct: 9 TRGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMD 68 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL++ + P L VI+MTA +++AV A + GA+DY+ KPF E VERA+ Sbjct: 69 GLTLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALER 128 Query: 122 YQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q+ N+ + ++G + AM+++ + R+++S +VLI GESGTGKELV Sbjct: 129 ARLQRDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKELV 188 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH HS R F+ +N AAI + L+ESELFGH KGAFTGA R+G FE+ADGGTLF Sbjct: 189 ARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGTLF 248 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 +DE+ + Q++LLR L +G+ RVG ++VDVRI+AAT++++E V++ +FR+DL Sbjct: 249 IDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQDL 308 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ + +PPLRER ED+P LA HFL+ A K L + L +PGNV Sbjct: 309 YYRLNVVALRVPPLRERLEDVPALAEHFLERANARSP-NPKRLSAAAVSHLMSYGFPGNV 367 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +A G E+L +D P T A T S A L Q + Sbjct: 368 RELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGT-----PSVAFLDGQGGALGRNAS 422 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L++ E ER +T AL A LG TL RK+K L + Sbjct: 423 AGPTLAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKRLNL 473 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 187/470 (39%), Positives = 282/470 (60%), Gaps = 27/470 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + VV+DD + L + L G T +G + L L+ ++ D++++D+++PGM Sbjct: 1 MTKPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL+LL++IK+++ + ++++TA+S + +AV+A + GA +YL KP D++E ++E+ Sbjct: 61 GGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLRE 120 Query: 121 HYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q Q R ++ ++++G +P M +F++I ++ S+ SVLI GE+GTGKEL Sbjct: 121 KQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VAHA+H S RA PF+AL+ AA+ + ++ESELFGHEKGAFTGA R+GRFE ADGGTL Sbjct: 181 VAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE+ +M L VQ +LLRVL G+F RVGG +KVDVR IAAT++NLE+ V EG+FRED Sbjct: 241 FLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNVI + +PPLRER++DIP L+ +F A++ E K PE AL W GN Sbjct: 301 LFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+L+NT V+ + + LP + D Sbjct: 361 IRELQNTIERAIVLCKSDTISVDHLPESI-----------------------MPDNEYIP 397 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + E E+ ++ L+ T G KQ AA++LG + K KE Sbjct: 398 VIKIPIGTTLKEAEKEIIQRTLQITNGSKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 177/471 (37%), Positives = 264/471 (56%), Gaps = 23/471 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT--PDVLLSDIRMPGMDG 62 V VVDD+ +R VL A G +EA+ ++L+D+ MP G Sbjct: 14 RVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSG 73 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L K R VI+MTAHS +++A+ A + GA+D++ KPF E AL +A+ Sbjct: 74 IEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKS 133 Query: 123 QEQQQPRNVQLNGPTTDI-----IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + ++ D+ +G + AMQ + +I +++ + +VL+ GESGTGKE V Sbjct: 134 SIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERV 193 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H S RA PF+ +N A+P+ L+ESELFGHEKG+FTGA G F +ADGGTL Sbjct: 194 ARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREADGGTLL 253 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++P +Q +LLRVL + + VG A + VDVR++AAT++++E V++G+FR+DL Sbjct: 254 LDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDL 313 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNVIR+ LPPLRER DI RLA FL+ A ELG + + L + AL ++PGNV Sbjct: 314 YYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYSFPGNV 373 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN +A G + + DLP + + + + Q Sbjct: 374 RELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCA------------ 421 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E E+ER L+ AL T G ++ AA+LLG +L +L + + Sbjct: 422 ----LDEVIGEVERRLILQALERTGGVRKAAAKLLGVSFRSLRYRLAKHAL 468 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 197/513 (38%), Positives = 279/513 (54%), Gaps = 48/513 (9%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPGMDG 62 ++ V+DDD+ +R+ L R L+ +G E + + PDV+ D+RM GM G Sbjct: 7 PVILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVRMGGMSG 66 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+ I+ +P VI+MTA A+ A + GAFDY+ KPFD + +AL E A+ + Sbjct: 67 LEALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAENALKAH 126 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + ++ I+G +P MQDVF+I+G+++ S ++V+I GESGTGKELVA Sbjct: 127 HDMRAAGEYKPTINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGTGKELVA 186 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ++ +HS RA FIA+N AAIP +LIESELFGHEKG+FTGA R G+FE D GT+FL Sbjct: 187 RSIWKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRIGKFELCDRGTIFL 246 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM L QT++LRVL G+ RVGG +KVDVRIIAAT+++LE V+ FREDL+ Sbjct: 247 DEIGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKTFREDLY 306 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+R+ +PPLRER DIP++ LQ ++ + PE L R WPGNVR Sbjct: 307 YRLNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGKVSPEAMNILARHDWPGNVR 366 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+A G +L +DLP E+ ++ +T+ L Sbjct: 367 ELENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLATAVSTTTPSPPPPPNIERSMLNVQR 426 Query: 419 QNLLSEA-------------------------------------------QPELERTLLT 435 EA LER ++ Sbjct: 427 SVFDGEAASPATIAAPSPPPPPSTTATPTLESALDFLHHELTITADIEPILKRLEREMIA 486 Query: 436 TALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 R T G+ ++A LLG R TL ++L+EL + Sbjct: 487 RVYRATDGNIAKSADLLGITRPTLKKRLEELAL 519 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 162/468 (34%), Positives = 267/468 (57%), Gaps = 19/468 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDD+ +I+ +++ L G T + + + + DV+ D+ +P +G Sbjct: 1 MLNILVVDDEKNIQDLMKDILTDEGYYVGTTGSITTAKDFIKKNSYDVIFLDVWLPDGEG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL IK+ P V++++ H+++ AV A ++GAFD+L KP + +A +E+ Sbjct: 61 LDLLPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKVEKQI 120 Query: 123 QEQQQPRNVQLNGPTT-DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + +Q + +IIG +P + ++ R I ++++++ V+I GE+GTGKELVA ++ Sbjct: 121 KVKQSLEYFKEKEEKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSI 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H SPR PF+ +N AAIP +L E+E FG+EKGAFT A T + G+ E AD GTLFLDE+ Sbjct: 181 HYQSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEV 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 DM L Q +LLRVL + QF R+G + VD+R+I+AT++++++ V++G FR+DL RL Sbjct: 241 ADMSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRL 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +VI +++PPLRER EDI LA +FL+ + E VE +L E + WPGNVR+L+ Sbjct: 301 SVIPIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPGNVRELK 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N L ++ + + +DLP + + E + Sbjct: 361 NLMERLVILNSESIIYNKDLPPHMLGNVKLEKEESIP------------------ITIRP 402 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +A+ ELE+ ++ AL+ + +E A+ L ++L RK+K+ +E Sbjct: 403 LKDAKEELEKQMIKKALKVYNNNLKEIAKALDIDLSSLYRKIKQYNLE 450 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 167/464 (35%), Positives = 258/464 (55%), Gaps = 18/464 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDD+ SI L L G T NG E ++ L+ +PD++L DI MPGMDGL Sbjct: 3 PSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LKQ+++ HP +PV+++T H ++ AV A + GA+D++ KP I++ V + A++ + Sbjct: 63 ETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRR 122 Query: 124 EQQQPRNVQLNG-PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 +++ ++ I G +PA+ +V I ++ + VLI+GE+GTGKE+VA +H Sbjct: 123 LEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIH 182 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S R+ P + +N A+I K +ESELFGHEKGAF GA ++GRFE A+ GTLF DE+G Sbjct: 183 HLSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVG 242 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DM ++ Q+R+LRVL + +F RVGG + VDVR+IA+T++NLE+ + +G FREDL++RLN Sbjct: 243 DMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLN 302 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVE-AKLLHPETEAALTRLAWPGNVRQLE 361 V+ + +PPL+ER +DIP L F + A ++ K + AL R WPGNVR+L Sbjct: 303 VVPIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRELR 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N L + V I+ +P + D L + Sbjct: 363 NLVERLVISTKASHVDIRHIPPAYKD----------------CAQEAIQDCGLDVFEVDS 406 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 +AQ E + L A +G ++ + + LK+ Sbjct: 407 YKDAQKAFEIAYIQRQLVKHDNDPDATAAAIGMDKSAIKKILKK 450 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 167/472 (35%), Positives = 272/472 (57%), Gaps = 18/472 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDD+ + R+ +++ L + NG +VL+ + + P ++ DI MP + Sbjct: 7 MHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQL 66 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL L++I++ V+I+TAH AV A ++GA+DY+ KP++++E + A+ Sbjct: 67 DGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRNALE 126 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q++ +++ +++G++ MQ+VF I ++ + ++VL+ GESG+GKEL Sbjct: 127 KIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKEL 186 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 AH +HR S R PFI +N AA+P+ LIESELFGHE+G+FTGA R G+FE A+ GT+ Sbjct: 187 AAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGTI 246 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIGDM L Q++LLRVL + +F R+GG + VDVRII+ATH++LE+ ++EG+FRED Sbjct: 247 LLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFRED 306 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R+NV+ + +PPLR+R+EDIP L F+Q +++ + + L+ WPGN Sbjct: 307 LYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWPGN 366 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +RQL+NT V+ + I DL ++ + PDS + + R + Sbjct: 367 IRQLKNTIESAIVLTNNDVLDISDLSEDIIR-------EEKTPDSTKNVHYHLSFREAK- 418 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ ++ L G+ A L R L +K+K+L + Sbjct: 419 ------KILIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIKDLQL 464 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 6/475 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDDD + L LA G + + L +++++D+R+ G Sbjct: 2 MPAASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGE 61 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L+ +K+ H PV++MT ++ + AV A + GA D L KP DE + ++RA++ Sbjct: 62 DGMTLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAMN 121 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + + ++ +I+ M +F +I ++ + S+LI GE+GTGK + Sbjct: 122 QRKIEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGTGKSM 181 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H R PFI + A+P L+ESELFGH GA+TGANT R+G+FE ADGGTL Sbjct: 182 IARAIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGGTL 241 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI +Q +LLRVL + QF +GG VD R+I AT++NL+Q V +G FR+D Sbjct: 242 FLDEIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFRQD 301 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R+NV+ + LP LRER DIP L HFL+ AA G + E L AWPGN Sbjct: 302 LYYRINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYAWPGN 361 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQLEN ++A + + DLP ++ ++ + S + A + Sbjct: 362 VRQLENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTASSGASSFNP 421 Query: 417 GHQN--LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + L EA ER ++ +LR ++ A L R TL +K+K LG++ Sbjct: 422 AVLDGCSLREALEGPEREIILHSLRRHNWNRAATADELEINRTTLYKKMKRLGLD 476 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 263/473 (55%), Gaps = 20/473 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALA-GAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + + +VDD+ + +L+R+L G +G E L L + D+LL D++MP Sbjct: 1 MTKETLLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPE 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 M+GL LL+Q++ +P L V++MTAH ++ AV A + GA+D++ KPFD + V + +A+ Sbjct: 61 MNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKAL 120 Query: 120 SHYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + ++ N+Q + +++G++ MQ V+ I ++++ ++VLI GESGTGK+ Sbjct: 121 ERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTGKD 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A+H S R PF+A+N AIP++++ESELFG+ KGAFT A R G F++A GT Sbjct: 181 LACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHKGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIGD+ ++Q +LLRVL + +G V VDVR++A+T+++L R++ G+FRE Sbjct: 241 IFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + +P LRER EDIP L H ++ L K + PE R WPG Sbjct: 301 DLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + A E+L +D+ + + Sbjct: 361 NVRELENVIVRGLLFAPRDEILPEDV---------------GFHRPVKGRIPGKDAPSTN 405 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +++ EA L T+G+ AA+L G R L + L+ G+ Sbjct: 406 VPYKDAKEEALRGFHAEYFGGVLTATRGNVSHAAKLCGLERQALQQLLRRYGI 458 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 169/474 (35%), Positives = 265/474 (55%), Gaps = 22/474 (4%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGA----GLTCTTFENGAEVLEALASKTPDVLLSDIRM 57 + +VDD++ +R + L T G E L+ + + D++L D++M Sbjct: 3 NKLHTLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMDVKM 62 Query: 58 PGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117 P M+GL L IK+ P V++MTAHS+L AV A ++GA+DY+ KP + +V + Sbjct: 63 PEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVRK 122 Query: 118 AISHYQE---QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++ V + ++I+G + M++VF +I RL + +VL+ GE+GTGK Sbjct: 123 SLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGK 182 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+H +SPR F+A+N AIP++L+ESELFGHEKGAFTGA + G+F+ A+ G Sbjct: 183 ELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNG 242 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIG++ D+Q +LLRVL + +F VG VK RIIAAT++NLE+ ++EG+FR Sbjct: 243 TLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFR 302 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF+RLNV+ + LPPLRER +DI LA +F++ +++ G + + PE L WP Sbjct: 303 EDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWP 362 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+LEN ++ ++ + LP + + + L Sbjct: 363 GNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPL--------- 413 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+E+ + +AL+ G + +NTL RK+++ G+ Sbjct: 414 ------DFDAFKEEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRKYGI 461 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 174/473 (36%), Positives = 261/473 (55%), Gaps = 28/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDDD +R +++ L GAG T E G E L A + + D++M M Sbjct: 1 MAGEKILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL+++ P LPVII+TA+ + AV A ++GA+D++ KPF+ + + +E+A+ Sbjct: 61 DGMVLLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALE 120 Query: 121 HYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + ++ +II + MQ V + +++ + +V + GESGTGKEL Sbjct: 121 VGSLRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A LH S R++ PF+A+N AIP+ L+ESELFGH KGAFTGA+ ++G +QA+ GTL Sbjct: 181 IAKVLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 F+DEI ++ +Q +LLRV D +FY VGG PVKVD R++AAT+Q+L + +Q+GKFRED Sbjct: 241 FMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R++VI V+LPPLRER EDIP LA HFLQ + P+ L WPGN Sbjct: 301 LYYRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N V+A + + L L + + Sbjct: 361 VRELANVVERAVVLAREGNICAEHL------------------------LLEREAVSDSG 396 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L+ A+ E ER L L T+G+ AA G R + L++ ++ Sbjct: 397 TELPPLTAARDEFERAYLIQVLHSTKGNVSRAAAKAGRYRAEFYKLLRKYDLD 449 >UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=B8DNW7_DESVM Length = 528 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 184/523 (35%), Positives = 266/523 (50%), Gaps = 57/523 (10%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + V+DD+ R ++ + +G + +G E LE LA +V+L D+RMPGMDG Sbjct: 1 MKRLLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHLAQDRVNVVLLDMRMPGMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +I++ +P LPV+++TA + +AV A ++GAFDYL KP D +E A++E+A Sbjct: 61 QETLARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDFG 120 Query: 123 QEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + ++ N++ D I+G + AM V I + S ++LI GESGTGKEL+A Sbjct: 121 RLLEENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 LH S RA P + +N AA+P L+ESELFG+ KGAFTGA + GRF+ A GGTLFL Sbjct: 181 QGLHDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++PL++Q++LLR L + +G PV VDVRIIAAT+++L++ V+ G+FREDLF Sbjct: 241 DEIGELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLF 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+ V PPLR+R ED+P LA L+ R+ + + PE AL R +WPGNVR Sbjct: 301 FRLNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN +++ + LP ++ + DR Sbjct: 361 ELENVLERALILSRSDTLGPDSLPSQVLADRADRWERGGPDGGQYRGQDRVGDRQRPYSS 420 Query: 419 QNL-----------------------------------------------------LSEA 425 + Sbjct: 421 DRPDMSDRAGMVDRAFERQGRPWGQDAASAIPRGDASWSGEGDGFMPGGYGGAPGAYPGS 480 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + ER L AL GH++ A LG R TL KLK+ G+ Sbjct: 481 LDDAERDALLRALEVHGGHRERTADALGISRRTLQYKLKKFGL 523 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 619 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 164/473 (34%), Positives = 252/473 (53%), Gaps = 25/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +VDDD + + L + T + E + + + D++LSDIR+ Sbjct: 1 MKNSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG +L ++ P VI++T + +D A+ A + GAFD L KP +E + +ERA+S Sbjct: 61 DGFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALS 120 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + ++ ++ +I+G MQ VF ++ R++ + +VLI GESGTGK L Sbjct: 121 QRKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+HR R F+ + A+P+ L+ESELFGH G+FTGA + G+F QAD GT+ Sbjct: 181 LARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG +Q +LLRVL + +F VG +VD R+I AT++ LEQ V G+FR+D Sbjct: 241 FLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++R+NVI + +PPLRER DIP LA HFLQ E G ++ + A+ R WPGN Sbjct: 301 LYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L+N ++ G +V ++DL + + ++ Sbjct: 361 VRELQNVVERAVLLGRGPKVQVEDLTPAIASGQI---------------------VSIDP 399 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L EA ER ++ L Q ++ A LG R TL +K+K LG++ Sbjct: 400 VGNKALKEALESPERAIILDVLEMHQWNRNATADALGINRTTLYKKMKRLGLD 452 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 619 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 253/470 (53%), Gaps = 28/470 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V +VDD++SI L L G T G + +E L PD++L+D+RMP + G+ Sbjct: 10 PRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMPDVSGV 69 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L +Q P +PVI+MTA + L +AV A +GAF Y+ KPF DE VA++ RA H + Sbjct: 70 QVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRAAEHRK 129 Query: 124 EQQQPRNV------QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + + + + IG + + +V R+ ++ + +VLI GESGTGKE+V Sbjct: 130 LRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESGTGKEVV 189 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H S R F+++N A+P+ L+ESELFGH KG+FTGA + G F A+ GT F Sbjct: 190 ARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAAANHGTFF 249 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG+ Q +LLR L + VG V VD R++AAT+++LE+ ++ G FR DL Sbjct: 250 LDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKRGGFRADL 309 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNVI VHLPPLR+R +DIP LA FL +A E K+L+ AL WPGNV Sbjct: 310 FYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDALMAYGWPGNV 369 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN ++ +G + LP + S+ P S Sbjct: 370 RELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSP--------------- 414 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 +ER + L++ G+K AA +LG +TL RKL G Sbjct: 415 -------TLEAIERAYIQWVLQNEGGNKSRAADMLGIDPSTLYRKLARYG 457 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 265/469 (56%), Gaps = 33/469 (7%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VV+D+ R +L L G G + E E L + V+L D+ +P +G+ Sbjct: 2 RVLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGME 61 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LLK I++ + V+++T H + AV A + GA+D+L KP + E +++A+ Sbjct: 62 LLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRGI 121 Query: 125 QQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ + +L+ + E+ AM++V + R++ S VLI GESG GKE++A Sbjct: 122 KRENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIASI 181 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +HR+S RA P +ALN+A+IPK+LIE+ELFG+EKGAFTGA++ ++G FE ADG TLFLDE Sbjct: 182 IHRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLDE 241 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG+M + +Q +LLR + +FYR+GG ++ +VRII AT+++L + V+ G+FREDL++R Sbjct: 242 IGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYYR 301 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ +++PPLRERREDI LA HFL + R+ K E +LT W GNVR+L Sbjct: 302 LNVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVREL 361 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 +N + + G + +D+ +S Sbjct: 362 KNIVERAVLFSDGDRIDSEDISCLFTHQESKKSF-------------------------- 395 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++ER +T L+ +K++A+ +LG TL RKL+ G+E Sbjct: 396 ---KTIKDVEREYITEILKQVNFNKRKASEILGIPLRTLYRKLESYGIE 441 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 187/471 (39%), Positives = 278/471 (59%), Gaps = 22/471 (4%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+ IRW + L G + E+G + LE +A+ PDV+L D+R+PG+DG+ Sbjct: 6 ARILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLPGIDGV 65 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L++ HP + V++M+AHS +D AV A + GA D+L KPF + VERA+++ + Sbjct: 66 QTLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERALANVR 125 Query: 124 EQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGTGKELVA 178 ++Q + + ++G + AM+ V +I RL+ S + VLI GESG+GKE+VA Sbjct: 126 TRRQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSGKEVVA 185 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S RA P + +N AA+P+ L+ESELFGHE+GAFT A+ ++G FE A+GG++ L Sbjct: 186 RAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEGGSVML 245 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+P Q +LLR+L + F RVGG ++ DVR+IAAT+ NLE+RV EG+FR DLF Sbjct: 246 DEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRFRADLF 305 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+R+ +PPLRE +D+P L HF+ +E+ + K + P L WPGNVR Sbjct: 306 FRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHWPGNVR 365 Query: 359 QLENTCRWLTVMAAG-QEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 +L N ++ AG E+ + LP EL ++ + T Sbjct: 366 ELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEKLVPQVTGEGL--------- 416 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ER L+ A+ G++ +AARLLG R+TL +LK+ GM Sbjct: 417 -------VLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 160/471 (33%), Positives = 263/471 (55%), Gaps = 6/471 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + V+DD+ +I E+ L + NG + +E + + D++++D++M M Sbjct: 4 PKAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMNSMG 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +L ++K P V+++T ++ + +AV + GAFDYLPKPF DE V +A++ Sbjct: 64 GLEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQALAP 123 Query: 122 YQE----QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + + T ++G++P MQ V R++ + + + +VLI GESGTGKE++ Sbjct: 124 EELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGKEVI 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +S R F A++ A+ ++L++SELFGH KGAFTGA ++G FE ADGGT+F Sbjct: 184 ARAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGGTVF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ + + +Q+ LLR L + VGG APVKVDVR++ AT+Q+L++ V +GK RED Sbjct: 244 LDEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLREDF 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++R+ V + PPLRERR DI +A HFL + + + + + P+ L +WPGNV Sbjct: 304 YYRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWPGNV 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQL N ++ G+ + ++L E + E Q L+ Sbjct: 364 RQLRNAIERAVILCEGRTITAREL--EHLQDKPGEEHHQAAYTITHDYQVPANAEELKEA 421 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + A ++ER LT AL + G+ AA G R+ + +K+ G+ Sbjct: 422 KKIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNFSNLMKKHGV 472 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 192/466 (41%), Positives = 270/466 (57%), Gaps = 17/466 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VVDD+S I L + GL +GAE LE L VLL+D+ MP G+ L Sbjct: 18 VLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDL 77 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK K P V++MTA+ ++ AV A ++GA+D++ KP V +V+ A+ Sbjct: 78 LKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLV 137 Query: 126 QQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + R ++ +IG + A + I+ + + S +VL+ GESGTGKEL+A +LH Sbjct: 138 VENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLH 197 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA PFIA+N AAIP+ ++E ELFG+EKGAFTGA + R+GRFE A GGTLFLDE+G Sbjct: 198 EGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVG 257 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGY-APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 +MP VQ +LLRVL +G+ R+GG +D+R+IAAT+ L + VQEG+FREDL++RL Sbjct: 258 EMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRL 317 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + +PPLRERR+DIP L +HFLQV A + G + L R AWPGNVR+LE Sbjct: 318 NVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELE 377 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V++ G+ + LP E+ A + + D L + Sbjct: 378 NAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGAL-------------RFA 424 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + E+E ++ LRHT+G K+ AA+LLG T+ R+L+ G Sbjct: 425 VGTPLAEIEMAVIHETLRHTKGDKRLAAKLLGIATRTIYRRLEAEG 470 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 186/469 (39%), Positives = 265/469 (56%), Gaps = 16/469 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +V+D+ S+R ++ AL+ AG + AL + D++++D+R+PGM Sbjct: 1 MTPHSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ LL I++ HP VI++TA +++ AV A + GAFD+L KPF D + VER Sbjct: 61 SGMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFR 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ ++ + IGE+PAM VF I L+ + + VL+ G SG+GKELVA A Sbjct: 121 FLDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LHR S R PFI +N AA+P+ L+ESELFGHEKGAFTGA R G+FE ADGGTLF DE Sbjct: 181 LHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +G+MPL +Q +LLRVL D + VGG P KV+VR + AT +NLE+ + +G+FREDL++R Sbjct: 241 VGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 +NV+ V LPPLRER D+ L FL+ +A L + AL +PGNVR+L Sbjct: 301 INVVPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N ++ E+ + LP + +T + + Sbjct: 360 RNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDD---------------AGDTPA 404 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L+E ER + AL T G K +AA LLG R L KLKEL ++ Sbjct: 405 SLAEGVARFERRRIMEALERTGGRKIQAADLLGISRKQLWLKLKELSID 453 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 181/469 (38%), Positives = 263/469 (56%), Gaps = 24/469 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V +VDD+ + +L+ L G + AE E L + DV+++D+ M GM GL Sbjct: 3 GRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSGL 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L ++I Q P LPVI++TA LD A SA + GA+D++ KPF++D VERA+ H Sbjct: 63 DLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHRA 122 Query: 124 EQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +++ R V I+ +P M+ VF ++ R++ S S+LI GESGTGKELVA Sbjct: 123 LREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+ S R++ F+A+N AA+P L+ESELFGH +GAFT A R G F +A GGTLFLD Sbjct: 183 AVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++P+ +Q +LLR L + VG + VDVR+IAAT+++LE ++E +FREDL++ Sbjct: 243 EIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R+NV+ V LPPLR R D+ LA+HFL+ A + L L AWPGNVR+ Sbjct: 303 RINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N +A + + DLP ++ + + Sbjct: 363 LQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVP-------------- 408 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ER + L G+K +AA++LG+ R TL RKL+ GM Sbjct: 409 ------MEEVERRYILRVLEVVGGNKSQAAQILGFDRATLYRKLERYGM 451 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 261/470 (55%), Gaps = 25/470 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + V++DD +R +L L +G + +G E L+ + +V+L D+RMPGMD Sbjct: 8 KEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMPGMD 67 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ +L+Q++ + VI+ T H ++ AV + GA+DYL KP +DE ++++A Sbjct: 68 GVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKANEK 127 Query: 122 YQEQQQPRNVQ---LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + N++ I+G++ +Q V + R + VLI GESG GKEL A Sbjct: 128 NRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKELFA 187 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S RA PF+ +N + + ESELFGH +GAFTGAN R G FE AD GTLF+ Sbjct: 188 RAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGTLFM 247 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEI +MPLDVQ +LLR+L G F R+GG + VDVR + A+++ LE V G+FREDLF Sbjct: 248 DEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFREDLF 307 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 HR+N++ +++PPLRER EDI L+ +FL +A E G + E AAL +WPGNVR Sbjct: 308 HRINLLPINIPPLRERPEDIIPLSYYFL-KSANESGSANWEISEEAMAALCAYSWPGNVR 366 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L NT R +++A Q + LP + A +G Sbjct: 367 ELRNTIRRASILATDQIISSDLLPF---------------------SPPKTAPSFAVTGL 405 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++L +ER + L +G+K +AA++L R TL KL+ G+ Sbjct: 406 PDVLPLPLWVVERDYIQKVLEKLEGNKSKAAKVLEIDRKTLYTKLERYGL 455 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 173/467 (37%), Positives = 277/467 (59%), Gaps = 12/467 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + ++DD+ +IR L+ AL G T + E L+ +A P + D+R+P +G Sbjct: 2 RKKIVIIDDEETIRLSLKEALMDLGYEAETAGDSWEGLKRIALFKPQAVFLDMRLPDGNG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L L+++IK+ L V++MTA+ D+ AV+A + GAFDY+ KPF++DE ++ R Sbjct: 62 LQLIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTRIFDKL 121 Query: 123 QEQQQPRNVQLN--GPTTDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKELVAH 179 + Q++ ++ IIG +M+DVF + LS + ++VLI GE+GTGKE+VA Sbjct: 122 KLQKKIYLLEKEKLSNDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTGKEVVAS 181 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +SPR +A + +N AIP L+ESELFG+EK AFTGA ++G E ADGGT+FLD Sbjct: 182 AIHHNSPRKEASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEIADGGTVFLD 241 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++ +D+QT+LLR L + +F RVGG ++V++R+IAAT+++LE+ +++ +FREDL++ Sbjct: 242 EIGELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEKKEFREDLYY 301 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + LPPLR+R EDI LA+H+L ++ + E + L + W GN+R+ Sbjct: 302 RLNVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLKYHWKGNIRE 361 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N ++ + ++ LP E+ S + +QP Sbjct: 362 LKNVLERTIILNDDSYIRLEHLPIEIVGSEEKTVATNIQP---------MIKIGEDIPKD 412 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L E+E++ + TALR +G+ +AA +LG R L RK ++ Sbjct: 413 FSLENYLQEIEKSYIQTALRLCKGNHSKAAYILGISRFALKRKQEKY 459 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 272/482 (56%), Gaps = 34/482 (7%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + +VDD+ L RAL T NG E ++ D++L+D++MPGM Sbjct: 1 MNKKKILIVDDEIHTCQGLARALKYE-WETFTASNGKEAIKIFEDNPVDIILTDVKMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ LL+Q+K P P I+M+A+++ + V A + GA+D++ KPF +D+ +++ A+ Sbjct: 60 NGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQ 119 Query: 121 HY--------------QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLI 166 Q + + + + II ++ AM++V R + +++ + SVLI Sbjct: 120 ASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSVLI 179 Query: 167 NGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQG 226 GE+GTGKE++A A+H S R+K FIA++ AA+ +L ESELFGHEKG+FTGAN R G Sbjct: 180 TGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKRIG 239 Query: 227 RFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQ 286 RFE ADGGTLFLDEIG++ Q +LLR+L F RVGG + D R+IAAT+++L + Sbjct: 240 RFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDLRK 299 Query: 287 RVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 VQ G+FREDL++RL+VI + LPPLR+RREDIP L +H+L + E + K + A Sbjct: 300 MVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADAMA 359 Query: 347 ALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLL 406 L WPGNVR+L N + V++ + + + +LP + S + D L Sbjct: 360 RLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKALD 419 Query: 407 AQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 E E+ L+ AL+ + ++ AA LG R TL R+LK+ Sbjct: 420 -------------------VAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQF 460 Query: 467 GM 468 G+ Sbjct: 461 GI 462 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 182/467 (38%), Positives = 266/467 (56%), Gaps = 20/467 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +VDD+ +R G + T EN + + L S + DV+L D+R+PG+ GL Sbjct: 14 NLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGLE 73 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+QIKQR P VI++T ++ + +AV A + GAFDY+ KPF++DE L++R H + Sbjct: 74 ALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLKL 133 Query: 125 QQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + R ++ ++G AP M+ ++RII + + S+ VLI GESGTGKE+VA A Sbjct: 134 TTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARA 193 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H PFI ++ ++ LIESELFG+ KGAFTGA +QG ADGGT+FLDE Sbjct: 194 VHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDE 253 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++P+D+Q++LLR L + + VGG V ++VRI+AAT+++LEQ VQ+G FR DL+ R Sbjct: 254 IGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFR 313 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + +PPLR+R++DIP L HFL+ R G + + + E + WPGNVR+L Sbjct: 314 LNVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQ-RNISDEALKLMLTYDWPGNVREL 372 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 E+ + +G + DLP + V T A Sbjct: 373 EHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVP---------- 422 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+E+ + A+ G K EAARLLG G+ TL RKLKE G Sbjct: 423 -----IAEMEKQAILEAIERLHGDKLEAARLLGIGKTTLYRKLKEYG 464 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 179/469 (38%), Positives = 261/469 (55%), Gaps = 24/469 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R +VDD+ IR +LE L L + N E E LA + D+ L+D+R+P Sbjct: 1 MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL L++ I+QRHP PV ++TA+ LD A+ A + GAFD+L KP D+ LV A+ Sbjct: 61 SGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALR 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + ++GE+P M+ + IG+L+RS V I+GESG+GKELVA Sbjct: 121 LR-----NPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARL 175 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H PR + PF+ +N AIP +L+ESE FGH+KG+FTGA +QG F+ A GGTLFLDE Sbjct: 176 IHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDE 235 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 + D+P+ +Q +LLR + + VGG V VDVRI+ ATH++L V G+FR+DL++R Sbjct: 236 VADLPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYR 295 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI + +PPLRERREDIP LA L+ A + G+ A L + + L +PGNVR+L Sbjct: 296 LNVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVREL 355 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + ++ DL A + A + Sbjct: 356 ENMLERAYTLCEDDQIQPHDLRL-------------------ADAPGASQEGAASLSEID 396 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L + ++ER L+ AL T+ ++ AA+ LG ++ +LK+LG++ Sbjct: 397 NLEDYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID 445 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 175/474 (36%), Positives = 263/474 (55%), Gaps = 28/474 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 RG + +VDD+ + L +L AG + A +AL PDVLLSD+ MPG D Sbjct: 8 PRGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGTD 67 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL++ + P L IIMT + AV A + GAFDY+ KPF + + + +++RA+ Sbjct: 68 GIQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAMEV 127 Query: 122 YQEQQQPRNVQL-------NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + +++ N++ I+G PA++ V ++I +++ ++ +VL+ G SGTGK Sbjct: 128 RRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTGK 187 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+H +S R P + +N A + + L+ESELFGHEKGAFTGA+ + G FE A+GG Sbjct: 188 ELVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEGG 247 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLF+DE+ +M +Q +LLRVL DG + RVG + DVRIIAAT++ LE + G+FR Sbjct: 248 TLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRFR 307 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF RL+VI V LP L++RRED+P L +HFL R++G + P + L R WP Sbjct: 308 EDLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCRYDWP 365 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+L N ++A G + DLP L + + + + Sbjct: 366 GNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTG----------- 414 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +ER + L G+K +AA+ LG R TL R + + + Sbjct: 415 --------PDDLDRVERHHVRDVLHRHGGNKVQAAKALGVSRRTLYRLIDKYKL 460 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 188/469 (40%), Positives = 272/469 (57%), Gaps = 17/469 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDD+ +IR L L G E+ + LE L S+ D+ + DIR+PGMD Sbjct: 26 TKASILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMD 85 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL + ++ LPVI+++ H+D V A ++GA D+ KP D D + V A+S Sbjct: 86 GLTLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSR 145 Query: 122 YQEQQQPRNV--QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + + + D++GE+PAM+ + IG+++ +S VL+ GESGTGKELVA Sbjct: 146 RDLEGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAA 205 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 +HR S RA PF+ +N AAIP +LIESELFGHEKG+F+GA R+G+FE A GGTLFLD Sbjct: 206 EVHRQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTLFLD 265 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGDM L Q ++LR L G+ RVG VDVRIIAAT+++LE+ V+ G FREDLF Sbjct: 266 EIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFREDLFF 325 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + +PPLR+R +D+P LA F Q+A RE G+ K + P L + WPGNVR+ Sbjct: 326 RLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGNVRE 385 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N C + +M+ G+ + D+P + L + Sbjct: 386 LRNVCERMVIMS-GERITAADVPETVGPRAAPPPPPGSAD--------------LSRYGE 430 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E + +ER + + L + +AA+ LG R L +K+K+ G+ Sbjct: 431 VPLKELRDLVERDYILSRLEEHDWNITQAAQALGVERTNLHKKIKQHGL 479 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 272/468 (58%), Gaps = 24/468 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ SI L+ AL + L + + DV+L D+++ +DG Sbjct: 1 MKRILIIDDEPSICSSLQFALED-DYETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDG 59 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L++IK++ P VI++TA+ + +V A + GA+ YL KP ++E +++E+A+ + Sbjct: 60 LEVLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYK 119 Query: 123 QEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + +Q + ++ +IG++ AM VF +I ++ SVLI GESGTGKELVA Sbjct: 120 KLNEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVA 179 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H R + F +N AAIP+ L+ESELFG+EKGAFTGA T ++G+F+ A+ GT+FL Sbjct: 180 RAIHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFL 239 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL +Q +LLRVL + ++G K+DVR+IAAT+++L+++V+EG FREDL+ Sbjct: 240 DEIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLY 299 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RL+VI +HLPPLRER+ED+P L +HFL +ELG K + + L +PGN+R Sbjct: 300 FRLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIR 359 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N V+A G+ + ++DLP + E + + D Sbjct: 360 ELSNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLD------------------ 401 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + ELE+ + L+H H+++ A +LG L KLK+ Sbjct: 402 -DYIGRPLKELEKDFILATLKHNDNHRKKTAEMLGISERGLRDKLKQY 448 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 189/485 (38%), Positives = 268/485 (55%), Gaps = 17/485 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-DVLLSDIRMPG 59 M + V VVDDD + R +++ L G E+G + + LAS DV+L D+ MPG Sbjct: 1 MAK-TVLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPG 59 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 + G L +++ R PVI++TA +D V A Q GA D+ KP + + + A+ Sbjct: 60 ISGQDTLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNAL 119 Query: 120 SHYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 S + + ++ + D+IG +PAM V R+ R +RSSI +LI GESG GKE Sbjct: 120 SMGALKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKE 179 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 ++A A+H S RA PF+A+N AIP++L+ES LFGHEKG+FTGA G+F++A+GGT Sbjct: 180 VIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGT 239 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDE+G++PLD+Q +LLR L + + +G VKVDVRI++AT+++L Q V EG+FRE Sbjct: 240 LFLDEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFRE 299 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RLNV + P LRER+EDIP L F++ E G PET A LT WPG Sbjct: 300 DLYYRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPG-----------ELFESTVAESTSQMQPDSWAT 404 NVRQLEN V+A + D P ++ A + + Sbjct: 360 NVRQLENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPSAGELA 419 Query: 405 LLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + E+ER L+ A+ GH E AR LG GR+TL RK++ Sbjct: 420 AELPQPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKVR 479 Query: 465 ELGME 469 E G+E Sbjct: 480 ENGLE 484 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 162/468 (34%), Positives = 261/468 (55%), Gaps = 20/468 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ SI ++ L G T + + L + D+L DI +P DG Sbjct: 1 MANILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LK+IK+ P L V+I++ H +++ AV A + GA+D+L KP ++ + +V+ + Sbjct: 61 IDGLKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIVKHLQDKF 120 Query: 123 QEQQQPRNVQ-LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q + R + D+IG + + D+ + I +++ ++ V+I GE+GTGKE VA + Sbjct: 121 QLMRDLRESRGDQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLI 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S R++ F+ +N AAIP +L+ESE+FGHEKGAFTGA+ ++G+FE+ D GT+FLDEI Sbjct: 181 HMLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEI 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM + Q +LLRVL + F RVGG A V D R+I AT++ LE + +G FREDL++R+ Sbjct: 241 GDMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRI 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + +PPLRER +DIP L HF++ A G+E K + E + WPGNVRQL+ Sbjct: 301 NVVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLK 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + V++ + + D P + + ++ ++ Sbjct: 361 NLVERMVVLSEDSVMSLDDAPDFIQGK-------------------HFPQKSYDVEYEYP 401 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L A+ E+ + L++ + +AR+L R L RK+K G+E Sbjct: 402 LKHAKENFEKHYILNILQNNDWNISRSARILEIERTYLHRKIKAYGIE 449 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 170/466 (36%), Positives = 268/466 (57%), Gaps = 27/466 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ SI V++ L+ AG T ++ E L + + D+++SD + G Sbjct: 1 MFKILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L+ +++ + P +I+TA+ ++ AV A ++GA Y+PKP DID + +++ I Sbjct: 61 LEILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKK- 119 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 Q+ +V+ IIG++ M+D+F+ I +S+S S+LI GESGTGKELVA A+H Sbjct: 120 ---QENFDVEEE--FEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIH 174 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 R S RA PFI +N +AIP +L E+ELFGHEKG+FTGA+ G+ E A GTLFLDEIG Sbjct: 175 RRSKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIG 234 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +MPL +Q +LLRVL + +F+RVGG +K+ R+I+AT++NLE+ V+ +FREDLF+R+N Sbjct: 235 EMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRIN 294 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 VI + +PPLRER+EDIP L + F+ ++ + + L WPGNVRQLEN Sbjct: 295 VIHLKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLEN 354 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V+ G+ + LP + ++ S + ++ Sbjct: 355 IIERAVVLCQGEIITANHLPDRIKSNSQKISENIRSENNSLN------------------ 396 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++E+ ++ L+ ++ AA+ LG R L K+K G+ Sbjct: 397 ---LYDIEKNIILKVLQEENFNQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 177/470 (37%), Positives = 268/470 (57%), Gaps = 27/470 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ V VV+DD ++R VL+ L AG +E + + D++++D+RMP +D Sbjct: 17 EQFTVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDLD 76 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G L++ I P+I++TA +D A+ A + GA DY+ KPF+IDE V ++++A++ Sbjct: 77 GFDLIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALAE 136 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 +++ +Q +II + M+++ ++ R++ S+ SVL+ GESGTGKELV Sbjct: 137 RALRRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELV 196 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +SPRA+ F+A+N+AA+P+ L+ESELFGH KGAFT A + G F +ADGGT+F Sbjct: 197 ARAIHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIF 256 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEI +M +Q +LLR L + + VG P +VDVR++AAT+++L++R+ EG FREDL Sbjct: 257 LDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDL 316 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEA-KLLHPETEAALTRLAWPGN 356 ++RLNVI++ LPPLR R +DI LA HFL +A+ L L ET+ L WPGN Sbjct: 317 YYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPGN 376 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N + G + +DLP + E + S Sbjct: 377 VRELANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVA----------------- 419 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +LER + L+ G+K A+ LG R TL RKL E Sbjct: 420 -----RRMNLAQLEREFIERILKEEGGNKTRTAQRLGLDRKTLYRKLDEY 464 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 179/471 (38%), Positives = 267/471 (56%), Gaps = 17/471 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +V+D + +R +L AL G N E L LA + +L+D+++PG G Sbjct: 1 MDCILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L PM+PV++MTA + AV A + GAFD++ KP D+ L+ERA+ Sbjct: 61 MDVLSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQ 120 Query: 123 QEQQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ IIGE P MQ+ R + R++ S +VL+ GESGTGKEL A Sbjct: 121 RLMRDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H+ S R+ PF+ALN AA+P+ LIE+ELFGHEKGAFTGANT + G+FE A+ GT+FL Sbjct: 181 RAIHQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++PL++Q++LLRVL + R+G P+++DVR++AAT++ LEQ V+ G FR DL+ Sbjct: 241 DEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL V + +PPLRER ED+ +A HFL +EL L P+ AAL WPGNVR Sbjct: 301 YRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+NT ++ + V DL + A + L + + +A R+ Sbjct: 361 ELQNTIERAAILHDTE-VTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRT-- 417 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +E+ + LR + +K AA LG TL K+ G++ Sbjct: 418 ----------IEKAKIEATLRECKWNKSAAAERLGISYKTLLTKIHGYGLD 458 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 615 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 273/470 (58%), Gaps = 20/470 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +VDD+ +R LE L G ++ +N E + + S+ D++++D+R+P M Sbjct: 1 MSN-KILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ LLK+IK +P + V+IMTA+ L++AV+A ++GA+DY+ KPF DE + ++RA+ Sbjct: 60 NGMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQ 119 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H + ++ +I+G + AM+ + + +S ++LI GESGTGKE Sbjct: 120 HKNTTAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGKEK 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H HS R PFI ++ AA+ ++++ESELFGHEKG+FTGA R+GRFE A+GG++ Sbjct: 180 IAGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGGSI 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLD++ D+PLD+Q +LLRV+ + F RVGG + ++VRII AT ++L ++G+FRED Sbjct: 240 FLDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV+ + +PPLRER++DIPRL +FL+ + ET L WPGN Sbjct: 300 LFYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + + I LP L + + L + Sbjct: 360 VRELENVIEHAVAFSHSHGITIDTLPDYLKR---------------VEIHKKLISMDLSN 404 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L + E+E+ L+ A + T G++ + A +LG R TL KL L Sbjct: 405 TQTIQLHDVLTEVEKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVRL 454 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 614 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 246/470 (52%), Gaps = 34/470 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R V VVDD+ +R L +G + + G LE +A K D++ DI+MP + G Sbjct: 4 RLKVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMPDVSG 63 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +L +IK P V+++TA+ ++ AV A ++GA DYL KPFD DE +ER + Sbjct: 64 FEVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQK 123 Query: 123 QEQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ + + ++IG + MQ +F +I ++++ +L+ GE+GTGKE+VA Sbjct: 124 KIVDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGKEMVA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R PF+ +N A + L+ESELFGHE AFTGA ++GR E A GGTLFL Sbjct: 184 KAIHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGGTLFL 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+G++PL +Q LLRVL + F RVGG + + VD R+I ATH++L ++ G FR+D + Sbjct: 244 DEVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFRQDFY 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNVI V +PPL R +DIP LA+ FL+ +E + + L WPGNVR Sbjct: 304 YRLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN V+A + + D L Sbjct: 364 ELENAIERAVVLAKERYLTRDDF------------------------------AFLCRSP 393 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ E E+ L L + +AA +L R TL K+++ + Sbjct: 394 AQPFPQSLRENEKQHLERILSFCGWNISKAAAILEISRVTLHSKIRKFDI 443 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 164/488 (33%), Positives = 263/488 (53%), Gaps = 22/488 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDD+ + ++ AL+ G G + + +PDV++ D +P ++G Sbjct: 1 MSTILVVDDEPVVTDYIKEALSEEGYAVEVAYTGNDGIVQAKKVSPDVIILDFMLPDLNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +LK+++Q L VI++TA++ + A+ A + GA DY+ KPFD+D V + Sbjct: 61 IEVLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICEKA 120 Query: 123 QEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKEL 176 Q R ++ + ++ + M V+ ++ +++++ +VLI GESG GKE Sbjct: 121 HLTNQLRFLREDNAKKLAGNEFLLCPSVQMAKVYDLVFQVAQTNDTTVLILGESGAGKEH 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A +H++S RA PF+ +N AAIP++L+ESELFGHE GAFT A + + G FE ADGGT+ Sbjct: 181 IAKLIHQNSSRAAKPFVEMNCAAIPENLLESELFGHEPGAFTDARSKKLGLFEYADGGTI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDMPL Q ++L+VL +F RVGG +K DVR++AAT+++L + G FRED Sbjct: 241 FLDEIGDMPLATQAKILKVLETKEFRRVGGLRDIKSDVRVVAATNKDLSFEIDRGNFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL V+ + +PPLRER+EDI LA FL++ R + L + +AL W GN Sbjct: 301 LYYRLQVVPIDIPPLRERKEDILHLANFFLEMTGRSMRKRL-ELSGDAASALLSYTWKGN 359 Query: 357 VRQLENTCRWLTVMAA-GQEVLIQDL--------------PGELFESTVAESTSQMQPDS 401 VR+L+N ++ G +L + L L E+ Q Sbjct: 360 VRELKNVIERAVIVTPNGSRILPEHLAFKPMSVAELAKKSEEFLIPKPDYEARQAEQQRQ 419 Query: 402 WATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461 + + L ++ER L AL T G++ +AA+LLG R+ L Sbjct: 420 AEQRSNGLSFSLSKFYDGFSLKAHLEQIERQYLLDALEKTGGNQLQAAKLLGIERHVLRY 479 Query: 462 KLKELGME 469 ++K+ ++ Sbjct: 480 QMKKYEID 487 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 283/475 (59%), Gaps = 11/475 (2%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + VVDDD I ++ L T A+ LE PD +L DI++P GLA Sbjct: 6 TLLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQSGLA 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+ + ++ +PVI+MT H + A++A GAF+Y+ KPF+ D + L++ A+ + Sbjct: 66 LIHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALETSRM 125 Query: 125 QQQPRNVQLNGPT----------TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++P + + I+G PAM DVFR IGR++ +VLI GE+GTGK Sbjct: 126 ARRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILGETGTGK 185 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E+VA A+++HS R F A+N AAIP+ L+ESELFGHE+G+FTGA+ R G+FE +GG Sbjct: 186 EVVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKFEICNGG 245 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIGDM +QT+LLRVL + +F RVGG P+K DVRI+AAT+++LE + +G FR Sbjct: 246 TLFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAMADGSFR 305 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 DLF+RLN + LPPLRER ED+ R+A HF + A +LG + + PET L +WP Sbjct: 306 SDLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRLMAHSWP 365 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L+ + + A+G ++ LP ES+ + ++ + W + +++ +R L Sbjct: 366 GNVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSPGNNVEI-SNGWESEVSKEINRRL 424 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 SG + + E++R L+ ++ T + EA+ LG R TL ++K L ++ Sbjct: 425 ASGSCTVSEDIHNEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRMKHLRLK 479 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 152/472 (32%), Positives = 262/472 (55%), Gaps = 31/472 (6%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + ++DDD+SI VL+ L G + + ++G E L +++L D+R+ Sbjct: 1 MSKEKILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLSEE 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ L++ I + +P LP+II+TAH +++AV A ++GA+ Y+ KPF D+ ++ A+ Sbjct: 61 NGIELMRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNALE 120 Query: 121 HYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q+ ++ IIG+ M ++ ++ R+S++ +V+I GESGTGKEL Sbjct: 121 KQRLTQEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H++S RA PFIA N AIP+ L+E+ELFGH +GA+T A+ ++G F QAD G++ Sbjct: 181 IARAIHQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKGSI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI + + Q +LLRVL + + VG K++VRIIAA++ +L++ V EG FR+D Sbjct: 241 FLDEISNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFRDD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+R++V+ V+LPPLR+R++DIP LA +F+ + L + P + WPGN Sbjct: 301 LFYRIHVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+L N ++A + +D+ E R + Sbjct: 361 IRELRNKIEHAAIVANKNNIEPEDIFPE---------------------------RNTTT 393 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +A+ ER + L+ G+ A+++ R + + +K+ + Sbjct: 394 NVFHSYKDAKERFEREYIENLLKANNGNITNASKMASRYRADIYKLIKKYNI 445 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 193/470 (41%), Positives = 290/470 (61%), Gaps = 5/470 (1%) Query: 1 MQ-RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + + +++DD+ L R L G T + G L + DV++SD+++PG Sbjct: 1 MSVKRTLLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DGL L+K++ Q P LP+I+MTAH + A+ A + GA+DYL KPF+++E + LVE+A+ Sbjct: 61 LDGLELVKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKAV 120 Query: 120 SHYQEQQQPRNVQL-NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + +P + IIG + MQ +++ IGR++ I+VLI GE+GTGKEL+A Sbjct: 121 ESSRLMSEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+++HS R+ APF+A+N AAIP+ L+ESELFGHE+GAFTGA+ R GRFEQA GGTLFL Sbjct: 181 RAIYQHSDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM L+ Q +LLRVL + +R+GG P+ +D R+IAATH++LE+ + + +FREDL+ Sbjct: 241 DEIGDMSLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV + P LR R EDIP L R+ +Q+ + +E+ + PE L WPGNVR Sbjct: 301 YRLNVAVIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN R + ++A + I+ + + + A + S A + + RA R Sbjct: 361 ELENVVRQVLLLAGRYTISIEHVREVVAKVGEAVAGGN---QSIAAGIGTYLSRARRGEM 417 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + + E+ER L A+ QG++ +AAR LG R T+ KL G+ Sbjct: 418 EGVHATVIEEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLNHFGL 467 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 251/469 (53%), Gaps = 27/469 (5%) Query: 5 IVWVVDDDSSIRWVLERAL-AGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VDD+ + + + + A T +GAE LE L D++++D+ MP MDG+ Sbjct: 6 RILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGI 65 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL +IK +P + ++I+T+ V A + GA+DYL KPFD + + +SH Sbjct: 66 ELLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKA 125 Query: 124 EQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q + ++IG+ M +++ +I +++++S +VLI GESGTGKEL+A Sbjct: 126 AVQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIAS 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S R PFI +N AA+ + LI SELFGHEKGAFTGA ++G FEQA GGTLFLD Sbjct: 186 AIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIGD+ Q LLR+L G F RVGG +K DVR+I AT+++L +E +FREDL++ Sbjct: 246 EIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYY 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + PPLR+RR DIP L R+FL+ + + + L WPGN R+ Sbjct: 306 RLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCRE 365 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + + G+ + LP ++ S DR Sbjct: 366 LANIIEHAVIFSRGRTLDKDSLPSQIRTS----------------------DRHSSGLTL 403 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 NL + + E L+ L + + ++AA LL R TL K+++ + Sbjct: 404 NLATATLADAESALIKKVLEESNWNLKKAAELLDIARGTLYGKMEKYHL 452 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 169/474 (35%), Positives = 265/474 (55%), Gaps = 16/474 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERAL--AGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M + + ++DD+ + L R L + TF + LE++ + DVLL DIRMP Sbjct: 1 MSKQRLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIRMP 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 MDG+ +L +K+ P + V+++TA+ ++ AV A ++GA+D++ KPF+I + V ++ +A Sbjct: 61 EMDGMEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLNKA 120 Query: 119 ISHYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + ++ N++ P D +G++P M+ ++ I L+ + +VLI GESGTGK Sbjct: 121 LERSLLIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA ALH SPR+ + +N AIP+ L+ESELFGH+KGAFTGA G F +AD Sbjct: 181 ELVARALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEADKS 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TL LDEIGD+P+ +QT+LLRVL + + +G KVDVRI++ T+Q+LE R+Q+ FR Sbjct: 241 TLLLDEIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRSFR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RLNV+ + P L E EDIP LA HFL+ ELG+ K ++ +WP Sbjct: 301 EDLYYRLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKSWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L+N R + + + +E+ D+ S + Q ++ Sbjct: 361 GNVRELQNFVRRVALFSPEEEIGAADI----------RVAQDSLYGSAESRQDQDSNGKA 410 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +Q E R +T L T+G+ A+ + G R L + ++ + Sbjct: 411 VKPYQQAKEELLENFTREYITRLLGQTEGNVTRASDIAGISRTALQKIMRRYEI 464 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 225/471 (47%), Positives = 318/471 (67%), Gaps = 7/471 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ VW++DD+ SIR + AL +F + +E L AL S TPD++++DI+MPGM Sbjct: 1 MKMNNVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL L ++ ++ P LP II+TAH+++D A+SAY+ GAF+YL KPFDI+E L +A Sbjct: 60 SGLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATK 119 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + Q + I+G+A +MQ+VF+ IG++S++ I+VLI GESGTGKEL+A + Sbjct: 120 SSKPQHDELT---QESNSQIVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQS 176 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +S R+ PFIA+N+AAIP +L+ESELFGHEKG+FTGA + R GRFEQA GGTLFLDE Sbjct: 177 VHENSSRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLDE 236 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDM ++QTRLLRVL+ +FYRVGG P+K DVRIIAAT+QN+E ++ GKFREDL+HR Sbjct: 237 IGDMHPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHR 296 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV R+ LPPLR+R+EDIP L ++FL+ +A E+ + K + L WPGN+RQL Sbjct: 297 LNVFRIELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQL 356 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFE---STVAESTSQMQPDSWATLLAQWADRALRSG 417 ENTCR++TVMA + + D+P E+ S + + + Sbjct: 357 ENTCRYITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVLQ 416 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 N L+ +LE+ LL AL+ ++G + +AA++LG GRNT+TRK+K+LG+ Sbjct: 417 DMNDLTNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKIKDLGL 467 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 174/479 (36%), Positives = 270/479 (56%), Gaps = 12/479 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + ++DDD I +L+ AG + L+ + S P+V + DI +P Sbjct: 1 MT-AKLLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQK 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ +LK+ K+ P L VI+ T + A+ A + GAFDY+ KPFD+ + V++A+ Sbjct: 60 SGIEVLKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALE 119 Query: 121 HYQEQQQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++ R + + +IG +P M ++++++G ++ S +VLI GESGTGK Sbjct: 120 CNLLSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGK 179 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 EL+A A++ +S R PF+A+N AA+P+ L+ESELFGHEKGAFT A++ R G+FEQ +GG Sbjct: 180 ELLARAVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGG 239 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 T+FLDEIG+M Q + LRVL + +F RVGG +KVDVR+IAAT+++L V+E FR Sbjct: 240 TIFLDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFR 299 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 DL++RL V+ LPPLR+R EDIP L F++ +++ G K + PET A LT W Sbjct: 300 MDLYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWE 359 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTV-----AESTSQMQPDSWATLLAQW 409 GN+R+L+N TV G ++ D L E+ + + ++L Sbjct: 360 GNIRELKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPV 419 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 D + + LE+ L+ A+ + ++ AA+LLG RNTL +L+ + Sbjct: 420 FDGICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERYRI 478 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 183/462 (39%), Positives = 262/462 (56%), Gaps = 20/462 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V V+DDD ++ + +L G +CT G + L + DV+L+D++M + GL + Sbjct: 10 VLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMADLHGLEV 69 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 +++ KQ P V ++T +D+ AV A ++GA YL KP D+ E A++E + Sbjct: 70 VERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENSAKRVGTL 129 Query: 126 QQPRN-VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 ++ R + ++G +P MQ V +++ + SS SVLI GE+GTGK+L A ALH + Sbjct: 130 RELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARALHTN 189 Query: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 PR PF A+N A + + L++SE+FGHEKGAFTGA+ R GRFE A GGTLFLDEIGDM Sbjct: 190 GPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGTLFLDEIGDM 249 Query: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304 PL +Q +LLR L +G+ RVG P+KVDVRIIAAT+++L++ V+ G+FR+DL+ RL V Sbjct: 250 PLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQDLYFRLKVG 309 Query: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 V LPPLRE REDIP+L HFL+ AR + P + WPGNVR+L N Sbjct: 310 TVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPGNVRELRNLL 369 Query: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424 + V+ E+ D P + + PD L+ Sbjct: 370 ASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPD-------------------QLVGR 410 Query: 425 AQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 E+ER + AL T G+++EAARLL TL RK++E Sbjct: 411 PLDEVERYYIEKALDLTGGNREEAARLLNISERTLYRKIQEW 452 >UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ22_DESHD Length = 494 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 176/489 (35%), Positives = 266/489 (54%), Gaps = 26/489 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V ++DD+ +R +L + L G E + L + +L DIR+P DGL Sbjct: 5 QRVLILDDEEDLRSILAQRLGRRGYEIMEAATAQEGMALLQETIFEAVLLDIRLPDGDGL 64 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL+ +K+R P L VI++T H L++A+ A + GA+DYL KP ++ E +++A+ + Sbjct: 65 QLLQAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSELEITLQKALEQRK 124 Query: 124 EQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + ++ IIG++ M+ + + +++++ VL+ GESGTGKEL A Sbjct: 125 LMVENTGLRQVVHRQNAELLIIGDSEKMRSLKAMTRKIAQTDTPVLLQGESGTGKELFAR 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH SPR+ +I LN A+ + L+ESELFGHEKGAFTGAN ++ G E AD GTLFLD Sbjct: 185 ALHVWSPRSGQAYIPLNAGAVHETLMESELFGHEKGAFTGANAVKLGLVEMADQGTLFLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MPL++Q +LLR + G+F RVG +V+VRI+ AT++NL + V+ G+FR+DL++ Sbjct: 245 EIGEMPLNLQVKLLRFMETGEFRRVGDNRLRRVNVRIVTATNRNLPEEVKAGRFRKDLYY 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHF----LQVAARELGVEAK--------LLHPETEAA 347 RL + +H+PPLRER+ DI +LA HF L+ + G A+ L PET+ A Sbjct: 305 RLTGMVLHIPPLRERKGDILQLAEHFLRTGLRRHTLQGGNPAQDRSQSQTIHLAPETQEA 364 Query: 348 LTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLA 407 L +PGNVR+L + ++A G + I+DL E E + T PD Sbjct: 365 LLAYDFPGNVRELAHLMERGMILAEGPLIRIRDLWPEHGEGRSSIQTELPLPDEERAAEM 424 Query: 408 QWADRALRSGHQNLLSE----------AQPELERTLLTTALRHTQGHKQEAARLLGWGRN 457 E E+E+ + ++ G+K AARLLG Sbjct: 425 DEKSIKTERQGDQAEQENQGDVLAGYLTLAEIEKDYILATMKKVDGNKARAARLLGISVR 484 Query: 458 TLTRKLKEL 466 L RK++E Sbjct: 485 NLYRKMEEY 493 >UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing protein n=23 Tax=Bacteroidetes RepID=C6XZM7_PEDHD Length = 468 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 162/468 (34%), Positives = 259/468 (55%), Gaps = 5/468 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD+ +IR L L +NG + LE + K D++L DI+M MDG Sbjct: 1 MAKLLIIDDERAIRSTLREILEYENYEVEDIDNGIDGLELIKKKKFDLVLCDIKMNKMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + +L+Q P LP I+++ H ++ A+ A ++GAFD++ KP D++ + V A+ Sbjct: 61 MEVLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKPPDLNRLLITVRNALDRG 120 Query: 123 QEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + ++ T DI+G + + + I R++ + VLI G +G+GKELVA L Sbjct: 121 NLVTETKVLKRKVSKTRDILGSSENIGKIKETIERVAPTEARVLITGANGSGKELVARWL 180 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA++P I +N AAIP +LIESELFGHEKG+FT A R G+FE A+GGTLFLDEI Sbjct: 181 HEKSQRAESPLIEVNCAAIPSELIESELFGHEKGSFTSAVKQRIGKFELANGGTLFLDEI 240 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GDM L Q ++LR L + + RVGG ++V+VR++AAT+++L + ++ G FR DL+HRL Sbjct: 241 GDMSLSAQAKVLRALQEHKITRVGGEKELEVNVRVLAATNKDLLKEIEAGNFRMDLYHRL 300 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI +H+P L ER EDIP +A +FL+ R+ G+ K + AL L W GNVR+L Sbjct: 301 NVINIHVPHLTERTEDIPEIALNFLEEICRDYGMPVKKISDGAMTALQALPWTGNVRELH 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N L +++ + + D+ + + T+ ++ + N Sbjct: 361 NMIERLIILSD-KVITENDV---IAFANPGGGTNIGAVNTANGQSGLAHGPTVDYDKFNN 416 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + + ER + L + + A + R+ L K+++ G++ Sbjct: 417 FQDYKDHAEREFIKFKLEKNNWNVSKTADDIEIQRSHLYSKIEKFGLK 464 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 262/478 (54%), Gaps = 16/478 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VDD+ ++ +LE LA AG T N E L+ L D+++SD RMPG+ G Sbjct: 40 MATILYVDDEVAVGLILEDTLAQAGHTPVGARNVPEALQVLERGGIDLIISDYRMPGLTG 99 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L ++ + + +P+I++T H+ ++ AV++ + GA DY+ KP + V++A+ Sbjct: 100 LEFIQLLTREGYDIPLIMLTGHASIEHAVTSIKAGAIDYITKPVRPQQLELAVDQALEFV 159 Query: 123 QEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + +++ ++ IIG++PA++ + + + + + +VL+ GESGTGKEL A Sbjct: 160 RLRRENETLRKEVMQFRNERQIIGDSPAIRRILQTVSMAAPTRATVLLQGESGTGKELFA 219 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S R PFI LN AA+P+ L+ES LFGHEKGAFTGA +G FE+A+ GTL L Sbjct: 220 RAIHDQSERRDKPFIKLNCAALPEGLVESALFGHEKGAFTGAIKRVEGAFERANRGTLLL 279 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEI +M LD+Q +LLRVL + +F RVGG +P+KVDVRI+A T+++L G FR+DL+ Sbjct: 280 DEISEMRLDLQAKLLRVLQEQEFERVGGTSPIKVDVRIVATTNRDLAMEADHGTFRQDLY 339 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+ I V +PPLR+R ED+P LA F A E+G + + L + +L + WPGN+R Sbjct: 340 YRLSTIPVLIPPLRDRAEDVPVLALRFAMRTAAEIGKKIEGLSQDALESLQQYPWPGNIR 399 Query: 359 QLENTCRWLTVMAAGQEVLIQDLP------------GELFESTVAESTSQMQPDSWATLL 406 +L++ ++ + L + +A +Q Sbjct: 400 ELQHVIERAVILTPDPIIQPHCLEGTRFGLAHSLGAPNMRPRAIATPGAQPVLAVSGAAA 459 Query: 407 AQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 A + +G L S + ER L+ AL ++ +AA +LG TL KL Sbjct: 460 APGSMNTPPNGGIALSSLNVADAERVLIQHALAAADNNRTKAADMLGISVRTLRNKLN 517 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 15/464 (3%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + +V+D +S+ + L + G + +E+L +TPD++L D+R+P M G+ + Sbjct: 13 LLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDV 72 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L +K+++P +PV+ MTAH +D AV A + GA D+L KP + D V A+ + Sbjct: 73 LYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKASKL 132 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + + N IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S Sbjct: 133 KNEADYPGNQGYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHATS 192 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M Sbjct: 193 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMD 252 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 LD+QT+LLR + G F +VG VDVR + AT+++ + V+EG+FREDL++RL VI Sbjct: 253 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYYRLYVIP 312 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 +HLPPLRER +DI +A L ++E G + L P+ WPGNVRQL+N R Sbjct: 313 LHLPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQLQNVLR 372 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 + V+ G+E+ + LP L + T + + ++ + Sbjct: 373 NVVVLNNGKEIDLSMLPPPLNKPTENQIRVDLPVSDEFSVQDIFP--------------- 417 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+ + A++ G+ +AA L +T+ RKL+ ++ Sbjct: 418 LWLTEKRAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQSWNLK 461 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 164/469 (34%), Positives = 265/469 (56%), Gaps = 22/469 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +VDD++ R +L L G T +G + + S+T V+L D++MPGMDGL+ Sbjct: 6 RILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGMDGLS 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L+ K+ P + +I++T H ++ A+ A ++GA+DYL KP++++E L+ +A+ Q Sbjct: 66 FLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVEKQQL 125 Query: 125 QQQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 ++ + ++ T I+ E+P +++V R++ + VL+ GESGTGK+++A Sbjct: 126 TEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKDVIAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ++ +S RA F+ +N+ AIP+ ++ESELFGHEKGAFTGA ++G E A GTLFLD Sbjct: 186 LIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GD+P +Q +LLR L G+F R+G KVDVRIIAAT+ +LE++V+EG FR DL+ Sbjct: 246 EVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRSDLYF 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL+V+ + +PPL +R EDI L+ FL R+ K L + +AAL ++PGNVR+ Sbjct: 306 RLHVMDITIPPLTQRSEDILPLSAFFLNRLKRKY--PVKPLSVKAQAALLAYSFPGNVRE 363 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L + V+A G+E+ +DL S ++ + + Sbjct: 364 LAHMIERAVVLAKGEEIDDKDLFPHEQPVPSNPSDRKLTTSAETGEEEAFL--------- 414 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +ER + L +Q +K + A LG L RK++E + Sbjct: 415 ------LKNVEREHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIEEYEL 457 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 179/498 (35%), Positives = 269/498 (54%), Gaps = 36/498 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP--GM 60 V +VDD+ ++ ++ L G + N + + AL TP+++++D+ + Sbjct: 1 MAKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRA 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL +L++ + P VI++TA ++ AV A + GA+DYL KPF +DE ++RA+S Sbjct: 61 HGLEILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALS 120 Query: 121 HYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + + ++ + IIG A MQ+VF++I R + + ++LI GESGTGKEL Sbjct: 121 YNEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA ALH +S R APFI +N +A+P++L+ESELFGH KG+FTGA T ++G F++ADGGT+ Sbjct: 181 VARALHFNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDKKGLFQEADGGTI 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG M +Q+RLLRVL + + RVG P ++VR++AAT++ LE+++++G FRED Sbjct: 241 FLDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKKIKDGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQ-VAARELGVEAKLLHPETEAALTRLAWPG 355 L++RLNVI + +P LRERR+DIP LA HFL+ G + + + LT WPG Sbjct: 301 LYYRLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQ-ITRQALDLLTTYDWPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + + I+DLP L S ++ + L Q Sbjct: 360 NVRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADVAQLPQPTTPPTS 419 Query: 416 SGH----------------------------QNLLSEAQPELERTLLTTALRHTQGHKQE 447 L + E E L L G K++ Sbjct: 420 LVPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLNRTLALFGGDKEK 479 Query: 448 AARLLGWGRNTLTRKLKE 465 A LG TL RKL E Sbjct: 480 TALHLGISLATLYRKLSE 497 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 171/472 (36%), Positives = 272/472 (57%), Gaps = 17/472 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + ++D++ + ++E+ L +G + + + +E ++ D++++DI+MPGM Sbjct: 3 DKQRILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMPGMT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL +L+++K++ LPVII+TA++ ++ ++ A ++GA+D L KPF+ DE V V+ A+ Sbjct: 63 GLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNALQQ 122 Query: 122 YQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 Q ++ R ++ +IIG + A+++V + +++ S+LI GESGTGKEL+ Sbjct: 123 AQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H HS R + F+A+N +P+ ++ESELFG+ KGAFTGA RQG E ADGGTLF Sbjct: 183 AQAVHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+G++P++VQ LLR L + +F RVG +VDVRII+AT+ +L++ V+ G FREDL Sbjct: 243 LDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ +HLPPLR+R +DIP LA HF+ + ++ G K + L WPGN+ Sbjct: 303 YYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWPGNI 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQL N M A + + L Q+ ++ Sbjct: 363 RQLRNVIEACMAMEASDYISLDTL-------------GQVIDLPEGRIVPATVQAGPVLS 409 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +EA ER LL L+ G AAR G TL RK+K G++ Sbjct: 410 DDLPFTEALERFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKRYGLK 461 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 175/475 (36%), Positives = 265/475 (55%), Gaps = 29/475 (6%) Query: 1 MQR---GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRM 57 M + V VV+DDS++R +L+ LA +G +G + L + +V+L D++M Sbjct: 4 MNKGKGAKVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKM 63 Query: 58 PGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117 PG+DG+ L+Q++ + +I+ T H ++ AV + GA+DYL KP +DE ++++ Sbjct: 64 PGVDGIETLRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDK 123 Query: 118 AISHYQEQQQPRNVQ---LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 A + + + N++ ++G +PA+ V ++ R + VLI GESGTGK Sbjct: 124 AYEKNRLRLENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGK 183 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 EL++ A+H SPRA+ PF+ +N + + ESELFGH +GAFTGAN R G FE AD G Sbjct: 184 ELISRAVHDASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTG 243 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLF+DE+ + PLDVQ +LLRVL G F R+GG + VDVR + A+++NL++ V G+FR Sbjct: 244 TLFMDEVSETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFR 303 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL+HR+N++ ++LPPLRER EDI LA F++ AA E + E AALT +WP Sbjct: 304 EDLYHRINLLPINLPPLRERPEDILPLAYFFMKSAAGRED-ENWEITEEAMAALTAYSWP 362 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L NT R ++A Q++ + LP S P Sbjct: 363 GNVRELRNTIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLP----------- 411 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER + L +G+K AA++L R TL KL+ G++ Sbjct: 412 -----------LWVVERDHIERVLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 192/467 (41%), Positives = 264/467 (56%), Gaps = 22/467 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + + +VDD+++ L RA AG T +N LE SK D++LSD+ MPG DG Sbjct: 4 KAEILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMPGRDG 63 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL+ +K PV++M+ + ++ AV A + GA D+L KP D+ + VE A+ Sbjct: 64 LTLLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENALKLK 123 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + + + R+++ +I+ + AM+ V I R++ S V I GE+GTGKEL A LH Sbjct: 124 RLETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTLH 183 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 SPR PFI LN AA+P +LIESELFGHEKG+FTGA G+FEQA GTLFLDEIG Sbjct: 184 EKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFLDEIG 243 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 DMPL +Q +LLRVL +G+ RVGG + VDVR+I ATH+NLE V+EGKFR+DLFHR+ Sbjct: 244 DMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLFHRVY 303 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V + LPPLR RREDIP L HF + G + E AL R +WPGNVR++ N Sbjct: 304 VFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVREMRN 363 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 L ++A EV + L E+ A S + P L Sbjct: 364 VVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGP----------------------L 401 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 S + ER ++ L+ + H A+ LG R+ L +K + LG++ Sbjct: 402 SSRVAQYEREVILAELQRQKHHITNTAKALGLERSHLYKKCQALGID 448 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 174/474 (36%), Positives = 270/474 (56%), Gaps = 27/474 (5%) Query: 1 MQ-RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + +V + +DD +R ++ L G T E+ E L+ + + V+++D+RMP Sbjct: 1 MNAQPVVVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPR 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DG+ +L +Q++P+ VI+MT H+ +++AV + + GAFDY+ KPF+ E VERA+ Sbjct: 61 IDGMKVLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERAL 120 Query: 120 SHYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 SH+ ++ ++ IIG + AM +V R+I + SVLI GESGTGKE Sbjct: 121 SHWNLSRENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA +H SPR F+A+N AAIP+ +IESELFG++KGAFTGA + G FE A+GGT Sbjct: 181 LVARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDE+ + L +Q +LLRVL D FYR+G P V+VR++AAT++++ + + FRE Sbjct: 241 IFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RL VI +H+P LR+RR+D+P LA +F+ A+ + + AL R WPG Sbjct: 301 DLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + ++ G+ + LP E+ T + Sbjct: 361 NVRELENVIQRALILCQGKVIDEGVLPPEISRGTELSVRA-------------------- 400 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ + E+E + LR T G + A +LG ++TL RK+K +E Sbjct: 401 --IDHMQPQTLEEVEVYFIRKTLRETNGDRALCAEILGIDKSTLWRKIKRYSIE 452 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 176/472 (37%), Positives = 272/472 (57%), Gaps = 18/472 (3%) Query: 4 GIVWVVDDDSSIRWVLERALA-GAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V VV+D R L+ L L T E+GA L L +K ++++D+RMP + G Sbjct: 8 QRVLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDLRMPRVGG 67 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L++ I+ + VI+ T + ++ AV A + G +D+L KP D +V+RA+ Sbjct: 68 MKLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRDR 127 Query: 123 QEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q + ++ +++ +P M D+F +IG ++ ++ +VLI GE+GTGKE +A Sbjct: 128 ALQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIA 187 Query: 179 HALHRHSPR-AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A+H+ S F+A+N A+ ++L+ESELFGHEKG++TGA+ R GRFE A GTLF Sbjct: 188 RAIHQASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLF 247 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGD+P+ +Q +LLRVL + +F RVGG P+++DVR++AATHQ++E+ V++GKFREDL Sbjct: 248 LDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDL 307 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+R+ +PPLRER EDIP L HF Q +G + + PE LT+ WPGNV Sbjct: 308 YYRLNVVRIDIPPLRERTEDIPVLVSHFCQKF-VRVGQKPPTISPEALDLLTKCPWPGNV 366 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 RQLEN V A + +DLP E+ + + L Sbjct: 367 RQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAG-----------KHPFHVDLNRK 415 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + LSE E + AL+ ++GH + A++ G R ++T K+ + ++ Sbjct: 416 LPDQLSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQYKID 467 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 170/478 (35%), Positives = 266/478 (55%), Gaps = 13/478 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + ++DDD I +L+ G + L+ + ++ P+V + DI MPG Sbjct: 1 MT-AKLLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMPGK 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G +L++ K+ P L +I+ T H A+ A + GA+DY+ KPFD ++ + V++A+ Sbjct: 60 SGFQVLQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQKALE 119 Query: 121 HYQEQQQPRNVQ-------LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 ++ R + +IG + M ++++++G+++ S +VLI GESGTG Sbjct: 120 CNLLNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESGTG 179 Query: 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 KEL+A A++ +S R PF+A+N AA+P+ L+ESELFGHEKGAFT A+ R G+FEQ +G Sbjct: 180 KELLARAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQCNG 239 Query: 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 GT+FLDEIG+M L Q +LLRVL +F RVGG ++VDVRIIAAT+++L V+E F Sbjct: 240 GTIFLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEKTF 299 Query: 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 R DLF+RL V+ LPPL++R EDIP L F++ +R+ G + + PET L + W Sbjct: 300 RMDLFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKHPW 359 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAES-----TSQMQPDSWATLLAQ 408 GN+R+L+N TV ++ +DL L + + + +L Sbjct: 360 EGNIRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKMLEP 419 Query: 409 WADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 D + LE+ L+ A+ + ++ AA+LLG RNTL +L+ Sbjct: 420 VFDGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERY 477 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 165/471 (35%), Positives = 268/471 (56%), Gaps = 11/471 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+ + L L G F + L L + PD++L D+R+P M+G Sbjct: 1 MAEIAIVDDEKVLVNSLRIGLTKKGYRVYPFYDANGFLSYLGANEPDLILLDLRLPDMNG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L+QI+ + +P +++TAH D+ +AV A + GAFDYL KPFD++E ++++ + Sbjct: 61 LEVLRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYLNKPFDMEELELIIKKVLGEA 120 Query: 123 QEQQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSIS-VLINGESGTGKELV 177 Q ++ + + +IIG++P M ++++ + +LS + VLI GESGTGK+L+ Sbjct: 121 QLVKEVEHHRQRSYKAVILENIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDLL 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H +PR+ PFI +N A++P+ L+ESELFGHEKGAFT A + G E A+ GTLF Sbjct: 181 AKAIHNLNPRSGRPFIEINCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTLF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++ + +Q +LL+ + F RVGG + V V+V II AT++NLEQ ++E FR+DL Sbjct: 241 LDEIGELSILLQAKLLKFIETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNV+ + PPLR+R+EDI ++ ++L R+ G + + + + WPGNV Sbjct: 301 FYRLNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGNV 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+N L +++ G + + LP + + A + G Sbjct: 361 RELKNLIERLVILSDGATITGRHLPDGMIQPIAASERENRFDPM------HVFKQDFSRG 414 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 Q + E +E+ ++ AL K AA+ LG R +L R++ L + Sbjct: 415 EQIPMDEILTAVEKKMIVNALEKADNVKTRAAKALGISRYSLLRRISRLKI 465 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 194/467 (41%), Positives = 274/467 (58%), Gaps = 19/467 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V VVDDD R V L G +GAE L LA P ++SD++MP +DG+AL Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 ++++ P LPV+++TAH+ ++ AV A ++GA YL KP DE ++ A++H + + Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 126 QQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + ++ +I+G APAM++VF ++ +++ + +VL+ GE+GTGKELVA A+ Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR SPR PF+A+N AIPKDL+ESE FGHEKGAFTGA R GRFEQADG TLFLDE+ Sbjct: 802 HRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEV 861 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD+ L +Q +LLRVL + + RVG P+KVDVRI+AAT+++LE V EG+FR+DLF+RL Sbjct: 862 GDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRL 921 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLRER +D+P L HFL+ A+ G + + P+ AA WPGNVR+L Sbjct: 922 NVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELR 981 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N C +M + A + +PD+ A + + L + Sbjct: 982 NLCERAVLMG----------WAAVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEAR---- 1027 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ER LT L+ +G E AR G L K+K G+ Sbjct: 1028 -QRLVERFEREYLTRLLKERRGRIGEVARAAGIAERNLYEKMKAYGL 1073 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 174/480 (36%), Positives = 258/480 (53%), Gaps = 21/480 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDD+ A +G E LE L V+++D RMP M GL L Sbjct: 9 ILVVDDEQDNLDAFRFNFKRA-FRLLCASSGEEALEILRDNEVAVIVTDQRMPRMTGLEL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQG-AFDYLPKPFDIDEAVALVERAISHYQE 124 L + + P II+TA++DLD V A G + Y+ KP++ E ++ A+ Y Sbjct: 68 LLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILTHALERYAL 127 Query: 125 QQQPRNVQLN---------------GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGE 169 ++ + + +IIG++ A+ +V + +++ ++ +VL+ GE Sbjct: 128 LRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLRGE 187 Query: 170 SGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE 229 +GTGKELVAHA+H +S R PF+ +N AA+ ++ESELFGHEKGAFTGA R GRFE Sbjct: 188 TGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVAQRPGRFE 247 Query: 230 QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 ADGGTLFLDE GD+P++VQ +LLR L + +F RVGG +KVDVR+I+AT+++LE ++ Sbjct: 248 LADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNRDLEAMIE 307 Query: 290 EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 G FREDL++RLNV +HLPPLR+R ED+P L HF+ AR + L Sbjct: 308 AGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRGAALDKLR 367 Query: 350 RLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQW 409 WPGNVR+LEN ++A G+E+ L + S + Sbjct: 368 SYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVISETASHS-- 425 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L L+E + ER + A+ + + AAR+LG R+TL ++++ G+E Sbjct: 426 --PPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRKHGLE 483 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 180/466 (38%), Positives = 265/466 (56%), Gaps = 22/466 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V +VD+D+++ +E +LA G CT +G E + + +++++D+ M +DG+ Sbjct: 17 RVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVDGME 76 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L + K+ P VI++T H+ + AV A QQGAF++L KP A+ E+A + Sbjct: 77 VLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADAVRL 136 Query: 125 QQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +Q + + II + M+ V + R++ + SVLI GESGTGKELVA A Sbjct: 137 RQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELVAQA 196 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H++SPR +ALN AA+ ++L+ESELFGH KGA+T A R G FE A+GGTLFLDE Sbjct: 197 IHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGTLFLDE 256 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GDMPL Q +LLRVL + Q RVG P++V+VR+++AT++ LE ++ G FR DL++R Sbjct: 257 VGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRADLYYR 316 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L V+ V LP LR+RREDI LA HF + R K + P L WPGNVRQL Sbjct: 317 LKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPGNVRQL 376 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N + V+ + I DLP EL ++ + A+ SG Sbjct: 377 RNAIETMVVLDTDGILDIDDLPPELVDA------------------EELRTPAIASGPSE 418 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L+ + +ER + L+ T G+++EAAR+LG G TL RKL + Sbjct: 419 LIGQPLDNIERWAIEETLKLTSGNREEAARILGIGARTLYRKLDKY 464 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 273/473 (57%), Gaps = 28/473 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M R + VVDD++ R L L AG + +G E L ALA + D++L+D+RMPGM Sbjct: 1 MSRARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL LL +K+R P + VI++T H+ +D AV+A GAF Y+ KP ++E +A +A+ Sbjct: 61 DGLELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKALE 120 Query: 121 HYQEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 +++ +++ + +IG++ M+ + I +++R +VL+ GE+GTGKEL Sbjct: 121 KNAMRRELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA +H S RA+ F+A+N A ++LI +ELFGHE+ AFTGA R+G E A GGTL Sbjct: 181 VARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++PL +Q +LLRVL + F RVGG +D R+++AT+++L++ + G FR+D Sbjct: 241 FLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFRQD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RL+VI +H+PPL ERREDIP LARHFL A E G L PE +L +PGN Sbjct: 301 LFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNV-RLSPEVLDSLLLYEYPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + + G + + L +L + V + + Sbjct: 360 VRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWP--------------- 404 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E E+ + L +G+K +AAR+LG R +L RKLK +E Sbjct: 405 --------TLEEHEKAYIRDVLEEVEGNKSKAARVLGIDRVSLWRKLKRYSLE 449 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 606 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 179/472 (37%), Positives = 266/472 (56%), Gaps = 13/472 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +++DD++ + +L AL G ++ E + D++L+D+ +PGM Sbjct: 1 MS-EHILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G+ + Q+++ P +I+MTA+S + A+ A + GA+D+ KPF + E +V RA+ Sbjct: 60 SGVEAIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRALE 119 Query: 121 HYQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q++ ++ + P IIG++ M+ V ++ +++ +VLI GESGTGKEL Sbjct: 120 KRRLQKEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKEL 179 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 V+ L S RA APF+ +N AAIP+ L E+ELFGHEKGAFTGA + + G+FE A GGTL Sbjct: 180 VSDTLRALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGATSAQPGKFELAHGGTL 239 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIGDMP +Q +LLR + + Q R+GG PV V+VRIIAAT+QNL + V FRED Sbjct: 240 LLDEIGDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFRED 299 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL V + LPPLR+R+EDIPRLA H L+ LG+ + AL WPGN Sbjct: 300 LYYRLGVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWPGN 359 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQL N + A G+ + QD+ A + T + A Sbjct: 360 VRQLANLLERAAISAQGR-ITAQDI-------AAALAVQNGTSPQPCTAQSPHDAPAAED 411 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + L E ++ER LL ALR +G ++ AA LLG + KL++ + Sbjct: 412 CLRMPLRETLHQMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQKHQI 463 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 165/471 (35%), Positives = 256/471 (54%), Gaps = 28/471 (5%) Query: 1 MQRG-IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M ++ VDDD + R G F + + L A + D++++D+ MPG Sbjct: 1 MSEAANIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 + G+ LL +I+ +PVII+T +S +D A+ A + GA D++ KP+D DE + L+ER + Sbjct: 61 LSGMDLLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERTL 120 Query: 120 SHYQEQQQPRNVQLNGPTT----DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + +++ R ++ ++G AM+ V+R+I +++ +V+I GESGTGKE Sbjct: 121 EGERLKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA A+H P A PF+ ++ AI L+ESELFGHEKGAFTGA + G E A GGT Sbjct: 181 LVARAIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEI ++ +Q +LLRV+ + Q RVG P+ +DVR IAAT++NLE ++ G+FR Sbjct: 241 VFLDEICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEFRH 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL+HRLNV+++H+PPLR RREDIP L + F++ A+ + + P L WPG Sbjct: 301 DLYHRLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+L N +A G + + + A Sbjct: 361 NVRELRNLVERTIALADGPVLHLD-----------------------RQWPSTGAASTAA 397 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + LER + L+ G++++ AR LG ++TL RKL++ Sbjct: 398 AQALDADQPDLATLERRYILKTLQRLDGNREQTARALGINKSTLWRKLQQY 448 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 159/469 (33%), Positives = 267/469 (56%), Gaps = 16/469 (3%) Query: 5 IVWVVDDDSSIRWVLERALAGA-GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 V + DD+ +R VL + + +VL L + +L++D+++PG + + Sbjct: 13 RVLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSNSI 72 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 ++ +K + +P+I++TA+ + A+ ++G FDYL PFD D V+RA+ Sbjct: 73 DFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKVSS 132 Query: 124 EQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +N++ +IIG +P++ + R++G ++R+ +VL+ GESGTGKELV+ Sbjct: 133 LTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSR 192 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+ALN AAIP++L+ESELFG+EKGAFTGA ++GRFE A GGT FLD Sbjct: 193 AIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLD 252 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EI +M VQ ++LR++ + R+GG +KVDVRII AT+++L Q V+EGKFR+DL++ Sbjct: 253 EISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYY 312 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R++V + LP LRER DI L++HF+ + ++G +L E E L + W GN+R+ Sbjct: 313 RISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNIRE 372 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N ++ + + LP + ++ + + + Sbjct: 373 LQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPN-------- 424 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +LE+ L+ AL ++ + +AA+LLG R T +L++ G+ Sbjct: 425 ---GLSLDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGI 470 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 155/459 (33%), Positives = 253/459 (55%), Gaps = 13/459 (2%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 VVDD+ +I +L L+ G+ +E + K D+ L D+R+P G+ +LK Sbjct: 5 VVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGIDILK 64 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 QIK+++P V+I+TA + + AV A + GA+DY+ KPF+I++ ++ +++ Sbjct: 65 QIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEKIDLERR 124 Query: 128 PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187 V+ + G++ A+Q+V I +++ I+VLI GESGTGKE+ A +HR S R Sbjct: 125 I-CVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSR 183 Query: 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD 247 PF+A+N A++P +L+ESELFG++KGAFTGA + ++G E+A+GGTLFLDEIG+MP+ Sbjct: 184 KNKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEMPMP 243 Query: 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 +Q +LLR L + +G +KVDVRII+AT++NLE+ +++G FREDL++RL I + Sbjct: 244 LQAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIK 303 Query: 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWL 367 +P LRER+EDIP L L+ + K + P+ L + GN+R+L+N Sbjct: 304 MPSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLLEKA 363 Query: 368 TVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQP 427 +++ G+E+ + + + L E Sbjct: 364 VILSDGEEL------------NFIPAFPEKFNSLYIDNPEDEFTVKSFPEEGVDLKEVLS 411 Query: 428 ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +E+ L+ AL +G K +AA +L +L + Sbjct: 412 RIEKALIFKALEKAEGKKSKAADILRLTFREFRYRLSKY 450 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 187/471 (39%), Positives = 278/471 (59%), Gaps = 27/471 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + V+DD S R +++R LA + F + A+ + A+ D +++D+RMPG+D Sbjct: 5 KKPSLMVIDDLDSARQMMKRTLARS-YDVYDFASVADAVPAVERADFDCIVTDLRMPGID 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L++ + + P +PVI++TA + ++ AV A + GAFDYL KPF+ +E +V RA+ H Sbjct: 64 GIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAVEH 123 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +++ ++ I+G++ AM+D+ ++ R++ S + +LI GESGTGK+L+ Sbjct: 124 ARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKDLL 183 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A H S RA+ P++ALNM+AIP++L ESELFGHEKGAFTGA+ R G F +A+GGTLF Sbjct: 184 ARAAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGTLF 243 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+G +P +Q +LLRVL DG+F VG P K +VR++AAT+++L++RV+EGKFREDL Sbjct: 244 LDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFREDL 303 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 + RL V+ + LPPLRERREDIP L H +Q A L E AL WPGN+ Sbjct: 304 WFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALLDHPWPGNI 363 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LE+ ++A G + + DLP EL A + Sbjct: 364 RELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGAD--------------------- 402 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + A+ ER L LR G AA L G R+T KL G+ Sbjct: 403 -EGRYRRARDAWERRFLEDVLREAGGQVARAAELSGLHRSTFYEKLARHGL 452 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 182/481 (37%), Positives = 268/481 (55%), Gaps = 14/481 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEAL--ASKTPDVLLSDIRMP 58 M + V +VDDD + R +++ A+ G E+G LE A V+L D+ MP Sbjct: 6 MAK-TVLIVDDDPTQRRLMQAAVERQGFRARLVESGDLALEEASDAKNGISVVLLDLIMP 64 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 G+ G+ L+++ +R P LPVI++TA +D V A + GA D+ KP + V + A Sbjct: 65 GLSGMETLERLLERRPDLPVIVLTASGGIDTVVQAMRAGAVDFFVKPASPERIVVSLRNA 124 Query: 119 ISHYQEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + + + + + D+I AP M+ V R+ R ++S+I +LI GESG GK Sbjct: 125 LKVSDLRGEVKRLSKKSEGTLGFDDMIAGAPLMRQVVRLGQRAAKSNIPILITGESGVGK 184 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E+ + + S RA PFI +N AIP++L+ES LFGHEKGAFTGA+ + G+F +ADGG Sbjct: 185 EVASQCIQSASERAGKPFITVNCGAIPENLVESILFGHEKGAFTGAHEKKLGKFAEADGG 244 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDE+G++PLD+Q +LLRVL +G+ VG P KVDVRII+AT+++L Q V EG+FR Sbjct: 245 TLFLDEVGELPLDMQVKLLRVLQEGEVDAVGSRKPTKVDVRIISATNRDLAQAVSEGRFR 304 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RLNV + +P LR+R+ED+P L HF++ + G+ ET + WP Sbjct: 305 EDLYYRLNVFPIEMPSLRDRKEDLPALVDHFIRRFNAQEGMSITGASLETMGMIAAHDWP 364 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFEST-------VAESTSQMQPDSWATLLA 407 GNVRQLEN+ +++ G E+ D P + S + AT L Sbjct: 365 GNVRQLENSIFRAMILSEGDELQPVDFPHISGLTPNYEILKTPNNGASISDAATTATQLN 424 Query: 408 QWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + N +ER L+ A+ GH + AR LG GR+TL RK++E Sbjct: 425 SPLGGPVSIVDDNGELRPLESVERDLIQYAIDLYSGHMSQVARRLGIGRSTLYRKVREYD 484 Query: 468 M 468 + Sbjct: 485 L 485 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 604 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 180/474 (37%), Positives = 278/474 (58%), Gaps = 32/474 (6%) Query: 1 MQR-GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + + +V+DD++ R +L L G E+G L+ L ++ D++LSD+R+PG Sbjct: 1 MSKTARILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVERA 118 ++GL L ++ + P +++TA ++ AV+A ++G D+L KP D LV R Sbjct: 61 LNGLELFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRRT 120 Query: 119 ISHYQEQQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 ++ +++ + +Q P +++ AMQ V +I ++ + +VLI+GESGTGK Sbjct: 121 LAVSMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 EL A +HR SPR APF+ALN AAIP+ L+ESELFGHEKGAFTGA RQG+FE A GG Sbjct: 181 ELAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASGG 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDEIG++PL +Q++ LRVL + F RVGG ++ DVRIIAAT+++LE+ V+ +FR Sbjct: 241 TLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRFR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL++RL+V +HLP LR+RR+ +P L R+ L+ AA + G E + + + AA+ WP Sbjct: 301 EDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+L+N ++ G +V + DLPG + + T + + Sbjct: 361 GNIRELQNVIERAVILCKG-QVTLLDLPGGVRQVTASGVIPKSNG--------------- 404 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + + ER + AL +++ AA LG + TL +LKE G+ Sbjct: 405 ----------SLRDRERNDILDALATCGNNRRLAAEKLGISKRTLQYRLKEYGL 448 >UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Firmicutes RepID=B8FXS0_DESHD Length = 463 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 170/469 (36%), Positives = 264/469 (56%), Gaps = 16/469 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DD+ ++R ++ + L G E L L D +L DI++P DGL Sbjct: 5 QKILILDDEEALRAIIAQRLKRKGYEVLEAGTAGEGLAFLNDTLVDAVLLDIKLPDGDGL 64 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LL +IKQ L VI++T + +++A+ A + GA+DYL KP ++ E +++A+ + Sbjct: 65 LLLPKIKQMQTDLQVIMLTGNGTIESAIEAMKLGAYDYLTKPCNLSELEITLQKALEKRR 124 Query: 124 EQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + ++ + I+ E+ AM + + +++++ SVLI GESG GKEL+A Sbjct: 125 LLLENTGLRQVVSRHASELKIVAESEAMTSLLNMTRKVAQTDTSVLIQGESGVGKELIAQ 184 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S R P I +N AIP+ LIESELFGHEKGAFTGA T + G E AD GTLFLD Sbjct: 185 AIHFWSSRVNRPCIPVNAGAIPETLIESELFGHEKGAFTGAGTQKIGLVEMADNGTLFLD 244 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MPL +Q +LLR L G+F RVG +VDVRI+AAT+++L Q + +G+FREDLF+ Sbjct: 245 EIGEMPLAIQVKLLRFLESGEFRRVGDTRLRQVDVRIVAATNRDLGQEIAQGRFREDLFY 304 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLN + + +PPLRERR DI L HFL+ +EL E L PET+ L +PGN R+ Sbjct: 305 RLNGLTLLVPPLRERRGDILPLVHHFLKTQRKELPHERYSLAPETQEQLLNYDFPGNTRE 364 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L + +++A + D+ E T+ S++ + + + + Sbjct: 365 LFHLIERGQILSADGIITPGDIWPEKSAPTLKSSSAFASEEEFLQIFQEHPYP------- 417 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + ++E+ + + L+ +G+K + A +LG L RKL+ G+ Sbjct: 418 -----SLDDVEKAYILSTLKKAKGNKTQTAHILGISVRNLYRKLQTYGV 461 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 181/468 (38%), Positives = 261/468 (55%), Gaps = 34/468 (7%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VVDDD R + + L+ +G LE + DV + D++MPGM GL L Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 L K +HP VI++T +++AV A + GAFDYL KPF + + +E+A + + Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDRHLLR 128 Query: 126 QQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + ++ + P + +IG++ AMQ++ R+I R S ++LI GESGTGKELVA AL Sbjct: 129 KENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARAL 188 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA P + +N AA+P+ L+ESELFGHEKGAFTGA + G FE ADG TLF+DEI Sbjct: 189 HAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLFIDEI 248 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G+MP +Q +LLRVL DG R+G +V+VRI+AAT+++++ V G FREDL++R+ Sbjct: 249 GEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDLYYRI 308 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV+ + LPPLR R DIP L HFL + P +AL + AWPGNVRQL Sbjct: 309 NVMSLELPPLRSRTADIPLLVEHFLGK--------DWRIEPTALSALEQYAWPGNVRQLI 360 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N +MA G+ + DLP E+ + D Sbjct: 361 NAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDI-------------------- 400 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ++R + L+ +G+K AAR+LG R L R L++ +E Sbjct: 401 --DDLSAIQRQKIVEVLKREKGNKSRAARMLGIDRRKLYRLLEKFTIE 446 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 186/473 (39%), Positives = 263/473 (55%), Gaps = 12/473 (2%) Query: 1 MQRG-IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M + V +VDD+ S R L ++ G+ T +G E LE L S DV+L+D+ MPG Sbjct: 1 MNQQIRVLIVDDEESQRAGLAAMVSAWGMLPKTAADGNEALETLNSFPADVILTDLNMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQ-QGAFDYLPKPFDIDEAVALVERA 118 +DG L+++++ M P I++TA+ +++ AV GA+ +L KP LV RA Sbjct: 61 LDGFGFLQRLREAGDMPPTIVLTAYGNIETAVKTVHELGAYWFLEKPIQAGTLEVLVRRA 120 Query: 119 ISHYQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 SH + Q+ R ++ G +++G++P MQ++F ++ + S VLI GESGTGK Sbjct: 121 GSHAELNQEKRVLERNLVYKGSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E+VA LH SPR + PF+A+N AA+P+ LIESELFGHEKG+FTGA R G FE A G Sbjct: 181 EMVARTLHALSPRRQGPFVAINCAALPESLIESELFGHEKGSFTGATERRAGCFELAQNG 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TL LDEIG+MP+ Q +LLR+L D + R+GG +VDVR++AAT++ E+ VQ G R Sbjct: 241 TLLLDEIGEMPMATQAKLLRILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQGGHLR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDLF+RLNV VHLPPLR+R++DI +A + R+ + L R WP Sbjct: 301 EDLFYRLNVFHVHLPPLRDRKDDIQAMADALIADLNRKHECRVTEIAAAVMTCLQRHNWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GNVR+L N ++A + ++ LP L S AT Sbjct: 361 GNVRELRNVLERAVILAGEGTIEVKHLPVFLQNRPATVVASDEPAAVAATAADDL----- 415 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 + L+ E E+ L+ L HT +K AA +LG TL KLKE G Sbjct: 416 -ETVRFLIGTTVEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLKEYG 467 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 176/471 (37%), Positives = 262/471 (55%), Gaps = 26/471 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R +VDD SIR + G C+ E+ L AL +++PD++L+D+RM + G Sbjct: 6 RIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRMGELSG 65 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L +K+ P V IMT + ++ AV + + GA+DY+ KPF ++E +++R Sbjct: 66 IDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQRMAEKV 125 Query: 123 QEQQQPRNVQLNG----PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + ++ I+G + +QDV R++GRL + VLI GESGTGKELVA Sbjct: 126 RLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKELVA 185 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H AK PF+A++ ++ LIESELFGHEKGAFTGA ++G F+ A+GGT+FL Sbjct: 186 RAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANGGTIFL 245 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG++PLD+Q +LLRVL D Q VG VKVDVR+IAAT+++LE + G FR+DL+ Sbjct: 246 DEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTFRKDLY 305 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 RLNV+ V+LP LRER+ DIP L +HF+ + G E + + +L + WPGNVR Sbjct: 306 FRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYDWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +LEN + G+ + + DLP L ++ + +T Sbjct: 364 ELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTD------------- 410 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ERT + G K A ++LG R TL RK+K ++ Sbjct: 411 -------LEDIERTTIQRVFDQVGGDKGLALKMLGISRATLYRKIKRYNID 454 >UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteobacteria RepID=B6BW54_9PROT Length = 465 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 226/467 (48%), Positives = 312/467 (66%), Gaps = 9/467 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + +W++DDD SIRWVL++AL T F N E + PD+++SDI+MPG Sbjct: 4 SKKKIWILDDDKSIRWVLQKALEKNNYTVLAFGNTNEAINQFNHDMPDLIVSDIKMPGES 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL L+++K + P +PVIIMTA SDLD+AV +Y GA++YLPKPFDID A+ ++ A Sbjct: 64 GLQFLEKVKGKFPNIPVIIMTAFSDLDSAVDSYSHGAYEYLPKPFDIDNAINVINSAF-- 121 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + + T IIG + AMQ+VF+ IG+LS+S S+LI GESGTGKELVA A+ Sbjct: 122 ---KDEADELNDIDSTNKIIGTSKAMQEVFKQIGKLSKSDASILITGESGTGKELVAKAI 178 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H +S R PF+ALN AAIPKDL+ESELFG+EKGAFTGAN+ ++G FE+A GTLFLDEI Sbjct: 179 HDNSLRKDKPFVALNSAAIPKDLLESELFGYEKGAFTGANSSKKGYFEEAQDGTLFLDEI 238 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 DMP+D+Q++LLRVL DG F ++G + +K +V+IIAATHQ+L+ ++ FREDLFHRL Sbjct: 239 ADMPIDLQSKLLRVLNDGSFQKLGSSSVIKANVKIIAATHQDLQDKINNQTFREDLFHRL 298 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NVI + LPPLRER DI LA+ FL +A++L K L+ ET+ +L W GN+RQL Sbjct: 299 NVITIQLPPLRERENDITLLAKFFLNQSAQDLNTSIKYLNEETQDYFKKLNWTGNIRQLR 358 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N C WLTVM+ G+E+ + DLP EL + E+ +W L + + N+ Sbjct: 359 NICHWLTVMSPGKEIGVSDLPTELLK----ENIYNKPSFNWEDNLELVIQNDILNNETNI 414 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +LE L+ +AL+H G + +AA +LG GRNT+TRK+K++ + Sbjct: 415 YDTYIEKLESILIKSALKHCSGKRIKAAHILGIGRNTITRKIKDINI 461 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 175/466 (37%), Positives = 266/466 (57%), Gaps = 19/466 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V +VDDD+S+R VLE AL G T EN + L A+ + D++L D+R+ +G Sbjct: 1 MATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGVDLVLLDVRLGQENG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + LL+ ++Q LPVI++TA++D +AV A + GA DY+ KPFD+ E + +VER++ Sbjct: 61 VDLLRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSLKTS 120 Query: 123 QEQQQPRNVQL--NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + Q++ R ++ G +IIGE+P MQ+VF ++ R++ + I++L+ GESGTGKELVA A Sbjct: 121 RLQEENRWLKKEIQGRYGEIIGESPCMQEVFHLVERVAPTVINILVTGESGTGKELVARA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H SPR P + +N +P++L+ESELFG+ +GAFTGA+ ++G E AD GT FLDE Sbjct: 181 IHAQSPRRDNPLMVINCGGLPENLVESELFGYRRGAFTGADKPKKGLLELADSGTAFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 + ++ Q +LLR + D F +GG + + DVRIIAAT++ ++Q V +G FR+DL++R Sbjct: 241 VAELAPSTQVKLLRCVQDKSFIPLGGASEITTDVRIIAATNRQVDQDVAQGHFRDDLYYR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+ + +HLPPLR+R D+ LA HFL A RE L PE L R +PGNVR+L Sbjct: 301 LSGMIIHLPPLRDRGSDVLLLAEHFLGRACREQKRSLLRLSPEARRKLQRYHFPGNVREL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + G + L ++ S G + Sbjct: 361 ENIIERAVALEQGNTITPSSLIIYEQDAAADPSGVNRV-----------------LGGEL 403 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 L + E +L A+ T GHK +AA+L+G + + Sbjct: 404 SLEDHLQSEEHKILKAAMDATGGHKSQAAQLVGLNFRQFRYRWDKY 449 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 174/475 (36%), Positives = 264/475 (55%), Gaps = 28/475 (5%) Query: 1 MQR--GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M + + ++DD+ A+ G C +G L+ + ++ DV+++D+ M Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMH 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 G+ +LK K++ P +I++T + ++ AV A Q+GA +L KP +I+ A + + Sbjct: 61 DFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKL 120 Query: 119 ISHYQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 + + + + T IIG + +MQ V ++ ++S ++ +VLI GESGTGK Sbjct: 121 VEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGK 180 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 EL+A +H +S R P + LN AAIP++++ESELFGHEKG+FTGA R+G+FE A G Sbjct: 181 ELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRG 240 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 T FLDEIGDMPL Q +LLRVL DG R+G ++VDVR+IAAT+Q L ++EGKFR Sbjct: 241 TFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFR 300 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL+ RLNVIR+ LPPLRER EDIP L F++ +R E + PE L R WP Sbjct: 301 EDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWP 360 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+L+N + V+ + + ++DLP + + + S Sbjct: 361 GNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVS------------------- 401 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 H + + E L+ L G+++EAAR+LG G TL RKL ++ Sbjct: 402 ---HGLMAGMTMEDAEIELIKCTLASVGGNREEAARMLGIGERTLYRKLDLYRLK 453 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 179/473 (37%), Positives = 270/473 (57%), Gaps = 17/473 (3%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGA-GLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 ++ +V VVDDD+ + +L R L T +G L L PDV+ +D+RMPG+ Sbjct: 11 EKPLVLVVDDDAEMLTMLVRLLNRKFDCRVETVASGEAALACLDRNRPDVITTDLRMPGL 70 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG++LL Q+K+ HP + VI+MT + +++ AV + ++GA+D++ KPFD + V +ER + Sbjct: 71 DGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERCLE 130 Query: 121 HYQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q+ R +Q + G + MQ+VF +I +++ ++++VLI GESGTGKEL Sbjct: 131 RVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGKEL 190 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 ALH S RA P + +N A+P +++ESELFG+ KGAFTGA + G F +ADG TL Sbjct: 191 AVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGSTL 250 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 LDEIGDMPL +QT+LLRVL + + +G VDVR++A+T+Q+LE ++ +G FRED Sbjct: 251 LLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFRED 310 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L +RLNV+ + +P L ER EDIP LARHFLQ A E P TE L R W GN Sbjct: 311 LLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWKGN 370 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+L+NT + + ++ +G ++ DL + ++ P R Sbjct: 371 IRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLT------------RL 418 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E R LT A+ + G+ AA+ G GR R L+ ++ Sbjct: 419 PYNEAKREVLTSFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLRVFDLK 471 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 191/466 (40%), Positives = 264/466 (56%), Gaps = 25/466 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 R V VVDD + +L+ L G GA+ + L ++ D +L D+RM +D Sbjct: 3 SRARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQDVD 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G +L ++ P LPV++MTA +++AV A ++GAF Y KPF +DE +ERA+ Sbjct: 63 GFDVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERALEQ 122 Query: 122 YQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + R ++ ++G + AM+D++ +I R++ S VL+ GESG+GKELV Sbjct: 123 RRLRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGKELV 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A ALH R PF+A+N A+P L+ESELFGH KGAFTGA T R+G F +ADGGTLF Sbjct: 183 ARALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGDM ++Q RLLRVL DG+ VG VDVR++AATHQ+LE RV+EG+FR D+ Sbjct: 243 LDEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFRADV 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE-AKLLHPETEAALTRLAWPGN 356 F+RLNV+ + LPPLRERREDIP L HFLQ A + PET AAL L W GN Sbjct: 303 FYRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPWAGN 362 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+LEN + L V+ + + V + L L T E+ Sbjct: 363 VRELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVP----------- 411 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRK 462 +LE + A+ G+K +AA LLG +T+ R+ Sbjct: 412 ---------LRQLETEYIAWAVARCGGNKTKAAELLGIDVSTIHRR 448 >UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfovibrionales RepID=A1VBP1_DESVV Length = 469 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 163/468 (34%), Positives = 249/468 (53%), Gaps = 9/468 (1%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V VDD+ SI +LE+ L+ + + E L T +V++ DIR+P DG+ Sbjct: 6 SVLAVDDEPSIGKLLEKELSTPARAVHVAGSARQARERLRRATYEVVVLDIRLPDADGIE 65 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 + +++QR+P + VI++T H ++D AV A + GA+DY+ KPF++ E +VERA Sbjct: 66 FMVELRQRYPDMEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQRAFL 125 Query: 125 QQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + R ++ +IG + +++V +I +++ + + VLI GESG GKE+ AHA Sbjct: 126 RNENRALRHAHDRGRPGVTLIGNSQVIKEVRYLIEKVAPTDVPVLITGESGAGKEVAAHA 185 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 + RA PFI N A + K+L SELFGH +G+FTGA R G A+ GTLFLDE Sbjct: 186 IQSLGTRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTLFLDE 245 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++P++VQ LLRVL + + RVG D+R+I AT++ L V+ G+F E L+HR Sbjct: 246 IGELPMEVQASLLRVLENKTYRRVGEKDHRSCDLRLIFATNRTLAGEVEAGRFHEALYHR 305 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 +NV + +PPLRER+EDIP LA FL G + + + + L + AWPGNVR+L Sbjct: 306 INVFNIEMPPLRERKEDIPLLAEFFLARLG--NGRDDLRISDKAMSCLMQYAWPGNVREL 363 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N ++A + LP +L + A A+ Sbjct: 364 RNVLERSIILAENNLITEHALPRDLAGFAGGSVGQSGVTGASGVCGTPGAPGAMGEMQGP 423 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L + +ER + L ++ AA LG R TL RK++E + Sbjct: 424 L---SLEAMEREHIARILEFYDNNRSLAATALGISRKTLYRKMREYDI 468 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 177/469 (37%), Positives = 268/469 (57%), Gaps = 14/469 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + VVDD+ SIR L L G ENGA+ L+ + + PD++L DI MPGM Sbjct: 1 MSKL-ILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ L+QI+ P L V++M+ H ++ AV A + GAFD++ KPF +D+ + + A++ Sbjct: 60 DGIQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALN 119 Query: 121 HYQEQQQPRNVQ-LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + +++ ++ +++G + ++ + I R++ +S VLI+GE G GKELVA Sbjct: 120 FKELRKENEALRLSALKEHEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVAR 179 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+A+N A+P+ L+ ELFGHE+GA+TGAN+ ++GR + ADGGT+FLD Sbjct: 180 AIHHYSTRRDKPFVAVNCMAVPEALLADELFGHERGAYTGANSQKRGRLDLADGGTVFLD 239 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+ ++ L Q LLR+L D F R GG PV++DVR++AAT ++LE+ VQ+G FREDL+ Sbjct: 240 EVHELSLKAQGELLRILTDHSFERCGGSRPVRIDVRVVAATSRSLERAVQDGLFREDLYQ 299 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 L V+ L PLRER EDIP L +HF+++ R G E K A L WPGN+R+ Sbjct: 300 FLQVVPFELVPLRERSEDIPLLVKHFVRLFHRREGWEPKTFDDSALACLKSYDWPGNIRE 359 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N + +MAAG + DLP + S+ + Sbjct: 360 LKNIVERILIMAAGPVITADDLPALMPGGNCKASSRLQEAAEQG------------EAAV 407 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L A+ ER + L + + +AA LL R L RKL + G+ Sbjct: 408 GSLRSARERFERDFILQTLLRSAWNLDKAAALLEMERTVLQRKLLQYGL 456 >UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax=Rhodopirellula baltica RepID=Q7USH9_RHOBA Length = 514 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 187/479 (39%), Positives = 274/479 (57%), Gaps = 13/479 (2%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + V+DDD +I + E+ALA + N A+ L L D +L DI++P + Sbjct: 27 SMPNLLVIDDDRTILALAEKALAPIA-DVSVAANAADGLGLLREGEFDAVLLDIQLPDQN 85 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GLA+ +I++ +PVI MT + + A+ A Q GAFDY+ KP +++ LVE+AI Sbjct: 86 GLAVYCEIREHDRRIPVIFMTVEAASNTAIEAMQLGAFDYIAKPLNVESLRDLVEKAIEQ 145 Query: 122 YQEQQQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 Q P + + D IG +P M DVF+ +G++++ + +L+ GESGTGKEL Sbjct: 146 RQISSVPVAISADDEGGDQSAELFIGRSPVMLDVFKAVGKVAKQDVPILVRGESGTGKEL 205 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA AL ++S R+ F+A+N AA+P +L+ESELFGHEKGAFTGA + R G+FEQ +GGTL Sbjct: 206 VARALFQYSHRSDETFLAVNCAALPDNLLESELFGHEKGAFTGAESRRIGKFEQCNGGTL 265 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM VQ ++LRVL + +F RVGG + +VRIIAAT++ LEQ V +G +RED Sbjct: 266 FLDEIGDMAPTVQAKVLRVLQEQRFERVGGNKELTTNVRIIAATNRPLEQMVVDGDYRED 325 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE-AKLLHPETEAALTRLAWPG 355 L +RLN + + LPPLR+R D+P L R FL A E + L PE LT WPG Sbjct: 326 LLYRLNGVTIELPPLRDRLSDVPALIRFFLAQAKIEFNKPDLEGLSPEAVDLLTVYDWPG 385 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQM------QPDSWATLLAQW 409 NVRQL R + + LP + + + + S+ + ++ + L Q Sbjct: 386 NVRQLRAVIRRCVLDTVMPVITPDTLPDAIAGTRNSGAKSESGTNEKLESEAPGSQLPQL 445 Query: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 R L+ N+ EA +ER ++ L+ T G++ +AA +LG R L ++ + Sbjct: 446 VQRLLKEKSTNVYGEAMEYMERFVILQVLQSTDGNQSQAAEILGITRGKLRDRINSYNI 504 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 177/470 (37%), Positives = 258/470 (54%), Gaps = 26/470 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDD+ ++ ++ AL G +GA L L K +++++DIRMP +D Sbjct: 4 PKARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMPELD 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LLK + R I+MTA ++ AV A + GA+DYL KP D+ A+V +A+ Sbjct: 64 GMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKALEL 123 Query: 122 YQEQQQPRNVQLNGPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + ++ + ++GE+ M+ V + +++S ++VLI GESGTGKELVA Sbjct: 124 QTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGKELVA 183 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H S RAK PFI +N AA+ + L+E+ELFGH KG+FTGA + GRF ADGGTLFL Sbjct: 184 RLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGGTLFL 243 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+ Q LLRVL DG F VGG +V+VR+I AT++ L++ V GKFREDLF Sbjct: 244 DEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFREDLF 303 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL ++ + +PPLRER EDIP L FL+ ++ + L E R WPGNVR Sbjct: 304 YRLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWPGNVR 363 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 QL N L V + V +++LP L + + ++ Sbjct: 364 QLRNVIERLVVTSPNAVVGVEELPDFLVAHDRSTNFFTVR-------------------- 403 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E E+ L+ L +++EAA+ LG R TL KLK+ G+ Sbjct: 404 ---VGMTLAEAEKLLIRQTLSQLTSNREEAAQALGISRRTLQYKLKQYGL 450 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 184/503 (36%), Positives = 264/503 (52%), Gaps = 41/503 (8%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 V ++DD+ S+ R L G +G + E +A DV + D+++P DGL+L Sbjct: 7 VLIIDDEQSVGTFFSRLLKPKGYRVGVACSGVQAHELVAKDHYDVAMVDLKLPDADGLSL 66 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVA--LVERAISHYQ 123 L+ IK P VIIMT +S AV A Q GAFDY+ KPFD D + L+E+A++ Sbjct: 67 LQHIKNVQPQCEVIIMTGYSTTRTAVKAIQYGAFDYIEKPFD-DILLIEKLIEKALNFGM 125 Query: 124 EQQQPRNV-----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q ++ +G P M + I R++ I+VLI GE+GTGKE++A Sbjct: 126 TDGQMDKETFSWSKVAEKIGFQVGRTPQMIKLVSIAERIAAKDINVLIQGETGTGKEVLA 185 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H S R+ PF+A+N A+P++L+ESELFGHE+G+FTGA+ R+G FE A+ GTLFL Sbjct: 186 RFVHAASQRSDKPFLAINCGALPENLLESELFGHERGSFTGASVQRKGIFELANNGTLFL 245 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIG+ L +Q +LLRVL G+F RVGG PVK +VRIIAAT+ +LE+ V++ +FREDLF Sbjct: 246 DEIGEASLAIQVKLLRVLETGEFLRVGGEKPVKTNVRIIAATNVDLEEAVKQKQFREDLF 305 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+VIR+ LPPL+ER EDIP+ HF+ P A+ WPGN+R Sbjct: 306 YRLDVIRLVLPPLKERLEDIPQFVEHFVNRFWERNDGPVPAFAPSCIEAMLNYHWPGNIR 365 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD------- 411 +L N+ + G VL + L G++ + + + + S+ L+ Sbjct: 366 ELANSVEQALALCDGNAVLPEHLSGKINGQFLNDERTDKKALSYHPGLSDATSVLNVKPE 425 Query: 412 --------------------------RALRSGHQNLLSEAQPELERTLLTTALRHTQGHK 445 + G + ELE + L G+ Sbjct: 426 DLDQLDQQALLDLYHKVDGLYRAIHRTMGKKGITTVFPLTIQELEARAIEETLEFFNGNV 485 Query: 446 QEAARLLGWGRNTLTRKLKELGM 468 +AR LG GRNTL RK KE + Sbjct: 486 SMSARALGIGRNTLYRKAKEYNI 508 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 169/463 (36%), Positives = 255/463 (55%), Gaps = 18/463 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + +VDD+ + +LE L G NG E L L + D+++SD+ MPGM G+ Sbjct: 12 SRILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPGMGGI 71 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + K+RHP LP I TA +++AVSA +QGAFDYL KP D +++RA+ + Sbjct: 72 EFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRALEFAR 131 Query: 124 EQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRS-SISVLINGESGTGKELVA 178 + ++ + +I+ ++PAM+ V + R++ S +V + GESGTGKE++A Sbjct: 132 LSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKEVLA 191 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H S + F+A+N AAIP+ L+ESELFGH +GAFTGA R+G+F A GGT+ L Sbjct: 192 RAIHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGGTVLL 251 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDMPL +Q +LLRVL + F +VG P VD R+I AT+++L Q V++G+FREDL+ Sbjct: 252 DEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFREDLY 311 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 HR+NV+ + +PPLRER EDIP L FL++ + G + + L +WPGNVR Sbjct: 312 HRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWPGNVR 371 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N + +M + + + + L + + S + L Sbjct: 372 ELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAE--------- 422 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461 + + +L +AL+ G+K AA LL R R Sbjct: 423 ----DVSLDAVVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=122 Tax=Alphaproteobacteria RepID=NTRC_AZOC5 Length = 480 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 205/475 (43%), Positives = 298/475 (62%), Gaps = 7/475 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M G + V DDD++IR VL +AL+ AG + N A + ++ D++++D+ MP Sbjct: 1 MPTGSILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDE 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 + LL +IK+ P LPVI+M+A + A+ A ++GA++YLPKPFD+ E +++V RA++ Sbjct: 61 NAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALA 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ ++ ++G + AMQ+++R++ RL ++ ++V+I GESGTGKELVA A Sbjct: 121 EPKKAEKLALGSDEQENIPLVGRSAAMQEIYRLLARLMQTDLTVMIAGESGTGKELVARA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH + R PF+A+NMAAIP+DLIESELFGHEKG+FTGA T GRFEQA+GGTLFLDE Sbjct: 181 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNAGRFEQAEGGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMP++ QTRLLRVL G++ VGG P+K DVRIIAAT+++L +Q+G FREDLF R Sbjct: 241 IGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFREDLFFR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + LPPLRER ED+P L RHF A G+ AK + L R WPGNVR+L Sbjct: 301 LNVVPLRLPPLRERSEDVPDLVRHFFLQ-AEREGLPAKQVDSAALDRLKRYRWPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQ------WADRAL 414 EN R L + + + + EL E + + D+ + ++ Sbjct: 360 ENLVRRLAALYPQEIITPSIIEAELSEPAPSALSEDGPVDATLGASVERHLNGYFSGFGE 419 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L ++E LL+ AL T+G++ +AA LLG RNTL +K+++L ++ Sbjct: 420 DLPPPGLYHRILRDVEYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIRDLDIQ 474 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 170/465 (36%), Positives = 259/465 (55%), Gaps = 27/465 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 ++ + VDD S VL+R L G T E L L D++++D RMP Sbjct: 3 EKIRILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMPQAT 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL L++ +++ H + ++++T + + AV A + GA +YLPKPF +E ++R + Sbjct: 63 GLDLIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRIVER 122 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 ++ + V++ T I+G +P MQ VFR IG+ + ++ +VLI+G+SGTGKELVA A+ Sbjct: 123 VHRRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVARAV 182 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H HS R APF+ +N AAIP L+ESELFGH KGAFTGA R G FE A+GGT+FLDEI Sbjct: 183 HYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFLDEI 242 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 GD ++Q +LLR+L ++ +VG VD RI+AATH++L++ V++G FREDL++RL Sbjct: 243 GDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLYYRL 302 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +V+ + +P L ER +DI L +FL ++ + + E AL +WPGNVR+LE Sbjct: 303 HVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVRELE 362 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N + + V+ + + DLP + + Sbjct: 363 NLIQRMVVIVDHDPIEVTDLPPNMR---------------------------FSLPMEER 395 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + + E+E+ + L T +K AA +LG R TL KLK + Sbjct: 396 VDRSLAEVEQEHIKNVLIMTDNNKTRAAEILGINRKTLREKLKRM 440 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 171/474 (36%), Positives = 273/474 (57%), Gaps = 22/474 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTF----ENGAEVLEALASKTPDVLLSDIRMP 58 R V +VD+D + + +L G CT E+G + L+ + + DV+++++ M Sbjct: 14 RVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITELMMD 73 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 +DGL +L++ K P VI++T H+ + +A++A Q GA YL KP DI E V+RA Sbjct: 74 EVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDRA 133 Query: 119 ISHYQEQQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 S + ++ R + +IG +P+M + + ++ + +VLI GESGTGK Sbjct: 134 SSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGK 193 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 ELVA A+H++S R PF+ LN++A+P+ ++ESELFGHE GAFTGA T R G+FE A+GG Sbjct: 194 ELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYANGG 253 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLFLDE+G+MP+ Q +LLRVL + + R+G + ++VR++AAT+ +L+ +++G FR Sbjct: 254 TLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKGTFR 313 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 +DL+ RL+V+ + LPPL +RR DIP L HFL+ A + + + AL AWP Sbjct: 314 KDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAYAWP 373 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414 GN+R+L N + V+ ++ + DLP + S + + Sbjct: 374 GNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNP------------- 420 Query: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +G+ L+ + ++E+ + AL T G + EAA LLG G TL RK++E + Sbjct: 421 -AGNDGLIGRSLNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIREYEL 473 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 222/503 (44%), Positives = 308/503 (61%), Gaps = 34/503 (6%) Query: 1 MQR---GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRM 57 MQ+ + V DDD ++R+VLE+AL+ AG F N ++ D++++D+ M Sbjct: 1 MQQEAEQTILVADDDQAVRFVLEQALSRAGYKVHAFGNTQPLVNHFNQYGGDLIITDVVM 60 Query: 58 PGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117 PG GL +++ +K +P LP+I+MTA S L AV A+++GAF+YL KPFDI+ V L R Sbjct: 61 PGGSGLDMVQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRR 120 Query: 118 AISHYQEQQQPR--------------NVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSIS 163 A+ +E+ + + + QL IIG + AMQ +F IGRLS S ++ Sbjct: 121 ALQKQEERVRNQPQTKTKQQAAAEDMDRQLEERFGGIIGSSRAMQALFHTIGRLSNSEMT 180 Query: 164 VLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI 223 VLI+GESGTGKELVA A+H +SPR + PF A+NMAAIP+DLIESELFGHEKGAFTGA + Sbjct: 181 VLIHGESGTGKELVARAVHAYSPRRRGPFTAINMAAIPRDLIESELFGHEKGAFTGAVSR 240 Query: 224 RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN 283 R G F++A+GGTLFLDEIGDMP++ QTRLLRVL +G F VG ++ DVRIIAATHQ+ Sbjct: 241 RPGHFQKAEGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATHQD 300 Query: 284 LEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE 343 L + EG+FREDLF+RLNVI +H+P LR R+EDIP L+++FL ++EL V K L Sbjct: 301 LPTAISEGRFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTSKELKVATKRLTQS 360 Query: 344 TEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELF-------------ESTV 390 L WPGNVR+LEN R LTV+ E+ + + E Sbjct: 361 AMEKLVAYDWPGNVRELENLIRRLTVLIPEDEIRPEKIELYERTMPKLARNDLSGHEPQE 420 Query: 391 AESTSQMQPDSWATLLAQWADRALRSGHQ----NLLSEAQPELERTLLTTALRHTQGHKQ 446 ST S+ +L Q D + + ++E L+ LR T+G++ Sbjct: 421 ERSTESNTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRV 480 Query: 447 EAARLLGWGRNTLTRKLKELGME 469 +AA++LG RNTL +K+++LGM+ Sbjct: 481 KAAQILGINRNTLRKKMRDLGMD 503 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 181/468 (38%), Positives = 262/468 (55%), Gaps = 29/468 (6%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 R + VDDD I VLE L AG T +GAE LE LA + +++SDIRMPGMD Sbjct: 7 TRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGMD 66 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL+++++R LP+I +TAH + AV A + GA DYL KPFD E + V + Sbjct: 67 GMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFAR 126 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 R + + + ++G++ AM+D+ +I R++ ++VL+ GESGTGKELVA+ + Sbjct: 127 AAGNDATR--ERDLGESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLI 184 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR SPR P + ++ + P L+ESELFGH KG+FT A ++G EQA+ GTLFLDEI Sbjct: 185 HRRSPRKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEI 244 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++ ++Q RLLR L + + R+G ++VD R+IAAT+ ++ ++V EG FREDL +RL Sbjct: 245 GNISTEMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRL 304 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V+ +++PPLRERREDIP LA HF + G+ + ET A L WPGNVRQL Sbjct: 305 KVVTINVPPLRERREDIPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQLR 364 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N V+ G + +DL L + + Sbjct: 365 NALEAGVVLCTGGVLAPKDLQLPLAGKGPDRAGESL------------------------ 400 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + E E+T + AL ++ AA LLG R L K+++ G+E Sbjct: 401 ---SLDESEKTAIVRALEQANWVQKAAAPLLGVSRRALNYKIQKYGIE 445 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 165/469 (35%), Positives = 272/469 (57%), Gaps = 30/469 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V ++DD+ +R + +R +A G N + + + DV+L D+++P G+ Sbjct: 3 GTVLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGSGV 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 + IK+++P + +I++TA+ ++ V A + GAFDYL K D + + L+ RA+ Q Sbjct: 63 DYARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEKVQ 122 Query: 124 EQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Q++ ++ I+G + ++D +++ + +VL+ GE+GTGKE+ A Sbjct: 123 LQKRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQ 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H +S R PF+ALN +A ++L+ESELFG++ GAFT AN ++G E+A+ GT+FLD Sbjct: 183 AIHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MPLD+Q++LLRVL G+F +VG P KV+VRIIAAT+++L++ Q+G FREDL++ Sbjct: 243 EIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYY 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV + LPPLRER++DIP+LA +F+ + + ++ + + P L W GN+R+ Sbjct: 303 RLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNIRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N +MA G ++ ++ LP +L + A + Sbjct: 363 LKNVLERAVIMAGGDDLAVEHLPLDLQIADKASTPLSAFD-------------------- 402 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +E+ + L HT+ +K EAARLL G TL RK++E G+ Sbjct: 403 ------LASVEKLHIIRVLYHTKNNKTEAARLLNIGLATLYRKIEEYGL 445 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 165/468 (35%), Positives = 248/468 (52%), Gaps = 23/468 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 V +++D+ S R +LE L G T +G E L+A K+ DV L DIR+PGMDG+ Sbjct: 10 HVLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPGMDGIQ 69 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 +L+ ++Q V++MT H ++ A+ A +QGA+ YL KP D+ E ++ +A+ + Sbjct: 70 VLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKALEKRRL 129 Query: 125 QQQ----PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + R + +I+G +PA+ V + + + I VLI GESGTGKEL+A A Sbjct: 130 ADRVEGLNRALDRQTGEPEIVGNSPALLKVIDLTRKAASWDIPVLITGESGTGKELIAKA 189 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R P+IA+N +P +L+ESELFGHEKGAF+GA R G E A GTLFLDE Sbjct: 190 LHHWSNRKGKPWIAINCGTLPSNLLESELFGHEKGAFSGAVASRVGLVEAAHEGTLFLDE 249 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ + +Q +LLR L G++ R+G K VR++AAT++NLE+ + G+FREDL++R Sbjct: 250 IGELEVGLQAKLLRFLESGEYRRIGNNRLFKSKVRVVAATNKNLEEAIAAGQFREDLYYR 309 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+ + + LPPLRERR DIP L ++FL+ + P L +PGNVR+L Sbjct: 310 LSGMVLRLPPLRERRGDIPLLVQYFLKR---RYPHRQPPIDPSVWERLEAYRFPGNVREL 366 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 + ++ G + G + + + ++ Sbjct: 367 AHMVDRACMLYDGGMLSWHHFVGFCDDGVDRSRSHKPADSAFVYPPGMP----------- 415 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E+ R + L G+K AA LG G TL R L+E + Sbjct: 416 -----LEEVRRRHILATLAMVGGNKAVAAEKLGIGLRTLYRYLEEWNL 458 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 181/473 (38%), Positives = 264/473 (55%), Gaps = 38/473 (8%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+R V +VDD+ +L++ L G + + L + DV L DI M GM Sbjct: 1 MRRCRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGLALL++ K+ P L +I++T ++ +D A+ A ++GA+DYL KP E ++++A+ Sbjct: 61 DGLALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALD 120 Query: 121 HYQEQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + Q N+ Q +IIG + A+ + +I R+S SS+ VLI GESGTGKEL Sbjct: 121 RKKLQDYSNNLIETIQRTNKKREIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA+ALH HS RA PF+ +N +AIP L+ESELFGH KGAFTGA ++G E AD GTL Sbjct: 181 VANALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIGDM +Q +LLR L G+F VGG K +VR++AAT+ NLEQ ++EG+FRED Sbjct: 241 FLDEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RL+V+ +++PPLRER D LA +FL+ + + K L E E L +PGN Sbjct: 301 LYYRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSK-----KKLSKEAEMFLLNYTFPGN 355 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N +++ ++ D Sbjct: 356 VRELANLIERGILLSKDNDLYPNDFF-----------------------------ARETY 386 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 N+ S A ++E+ + L T +K EAA++L G TL RK++E ++ Sbjct: 387 SKNNMKSLALQDIEKEHICQVLEKTGWNKTEAAKILKIGLRTLYRKIEEYKLQ 439 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 177/472 (37%), Positives = 264/472 (55%), Gaps = 28/472 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP-GM 60 + +VDD+ +IR L R L T + E L+ + ++++D++MP Sbjct: 36 SELHLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGDR 95 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGL L+ I+QR P I++TA+ ++ AV A ++GAFD++ KP D++ V +A Sbjct: 96 DGLELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAAE 155 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 H+Q + + +++ G T IG Q++ I +++ + +VL+ GESGTGKEL Sbjct: 156 HHQLRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKEL 215 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 +A A+H S R APF+A+N+ A+P+ L+ESELFGHEKG+FTGA+ + G FEQA GGTL Sbjct: 216 IARAVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGTL 275 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEI ++P Q LLRVL GQ+ RVGG ++ + RI++AT+Q + V++G FRED Sbjct: 276 FLDEITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFRED 335 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLN+I + +PPLR RREDIP L HFL+ K + PE L++ WPGN Sbjct: 336 LYYRLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPGN 395 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQL N L V + +L DLP EL + A+ST+ Sbjct: 396 VRQLRNHIERLVVTVPAETILAADLPCELHQQNAAQSTA--------------------- 434 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L E E+T + AL + H+++ A+ LG TL K+ + Sbjct: 435 --LKTLVEITESAEKTGIELALSAKKSHREQTAKALGISVRTLHYKMNRYNL 484 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 161/469 (34%), Positives = 268/469 (57%), Gaps = 28/469 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + ++DD+ +R +L R +A G + L+ L+ DV+L D+++P G+ Sbjct: 60 KKILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGV 119 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L K IK+++P +I++TA+ ++ V A + GAFDY+ K D + L+ +A Sbjct: 120 ELAKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAA 179 Query: 124 EQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 ++ ++++ T+IIG++ ++ + +++ + ++L+ GE+GTGKE+ A Sbjct: 180 LARRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQ 239 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H+ S R F+A+N +A +DL+ESE+FGH+ GAFTGA R+G FE+A GT+FLD Sbjct: 240 AIHQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLD 299 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+G+M LD+Q +LLRV+ G+F +VG P KV+VRIIAAT+++L ++ G FREDLF+ Sbjct: 300 ELGEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFY 359 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R++V ++ LP LR+R EDI LA+HF+ ++ + + P AL AW GN+R+ Sbjct: 360 RISVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIRE 419 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L+N ++++G E+ DLP ++ +S Q+ Sbjct: 420 LKNVIERAVILSSGTELAPDDLPIDIQFHPSVKSGKQLSAF------------------- 460 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +E+ + L HTQG+K EAARLL G TL RK++E + Sbjct: 461 -----SLQSVEKLHIQKVLNHTQGNKAEAARLLEIGIATLYRKIEEYRL 504 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 254/468 (54%), Gaps = 26/468 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 R + DD+++++ ++ L G T +G + AL T D ++ D+ MPGM+ Sbjct: 12 NRLKILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMN 71 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ ++ + K+ P +++T S D+A++A + GAFDYL KP + + AL+ R + Sbjct: 72 GIQVIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAK 131 Query: 122 YQEQQQPRNVQLNGPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + R ++ T+++G + AM V ++I +++ + +VL+ GE+GTGKELV Sbjct: 132 REWVNKCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELV 191 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+H+ S RA+ PF+A+N A+P+ LIESELFGH KG+FTGA+ R G FE A GGT+F Sbjct: 192 ARAVHQQSLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGADDHRVGLFEVAHGGTIF 251 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIG++P +Q +LLRVL G+ RVG VDVR++ ATH+NL + V+ G FREDL Sbjct: 252 LDEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDL 311 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 +R+N +H+PPLRER +DI LA H L+ L PE L + WPGNV Sbjct: 312 MYRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGNV 371 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L N +++ + ++LP L + T Sbjct: 372 RELANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPI--------------- 416 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 + +LE + AL G+K EAA LG TL KL + Sbjct: 417 -------SLRDLEMQAIHEALDRHNGNKPEAAEELGISLKTLYNKLNQ 457 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 181/473 (38%), Positives = 261/473 (55%), Gaps = 24/473 (5%) Query: 1 MQRG-IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPG 59 M R + V DDD + +L+ L LT +G + L+ L D++++D +MPG Sbjct: 1 MSRDLTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMPG 60 Query: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 +DG LL+ +K R +P +++TAH +D ++A + GA +YL KP D + V LVE+ + Sbjct: 61 LDGFELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKTL 120 Query: 120 S----HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + + + + V+ T+I+G++P MQ +F I + S+S+ +VLI GESGTGKE Sbjct: 121 NINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 L A A+H + P + PF+A+N +A +ESELFGH KGAFT A+ GRFE A+ GT Sbjct: 181 LAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDE+GD+P D+Q +LLRVL D F RVG P+ D R++AAT+++L+ V++GKFRE Sbjct: 241 LFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNVI + P LRE EDIP L HFL+ + G K L + WPG Sbjct: 301 DLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVRQLEN M G + DLP E+ Q D Sbjct: 361 NVRQLENAIESAAAMCDGSMIRTADLPLEITA-------------------PQSEDPLRE 401 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ L E +E+ ++ AL Q K AAR LG ++ K+ G+ Sbjct: 402 DAYRGTLPEVVERIEKHMILRALEQNQWVKAHAARTLGVSERVVSYKMANYGL 454 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 599 bits (1545), Expect = e-170, Method: Composition-based stats. Identities = 163/467 (34%), Positives = 263/467 (56%), Gaps = 29/467 (6%) Query: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALL 66 +VDD+ +R + R + GL +G E + ++ D++ D+RM GM G+ +L Sbjct: 11 LIVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVL 70 Query: 67 KQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQ 126 IK + V+++T ++ D + A + GAFDYL KPF +D+ +++RA Sbjct: 71 GWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPA 130 Query: 127 QPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 Q + + ++G +P MQ++F + +++ + +VLI GESGTGKELVA A+ Sbjct: 131 QTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAI 190 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H HS R + F+ ++ +A+ ++L+ESELFGH KG+FTGA ++G FE A+ GT F DEI Sbjct: 191 HYHSRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEI 250 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++ +D+Q +LLRV+ + +F +VGG +KVD+RI+ A++++L + E KFREDLF+RL Sbjct: 251 SNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRL 310 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +VI +HLPPLRER +DI L +F+ +R++G EA + E L AWPGNVR+LE Sbjct: 311 HVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELE 370 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 NT ++ + + LP ++ + + + Sbjct: 371 NTIERTLILKDDAVIKPEHLPQDIRQQPPDLRSFSDKMV--------------------- 409 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + +LER + L T G Q+AA +LG R TL+ K+K+ G+ Sbjct: 410 ---SLKDLERDYIRFVLSRTNGGIQKAAGILGINRKTLSMKMKKYGL 453 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 159/467 (34%), Positives = 266/467 (56%), Gaps = 45/467 (9%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 V ++DD+ + + L+ ++ G + + +++L + ++++D++MP MDG Sbjct: 1 MKSVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL++I++R PVI++T + +++ AV A + GA DY+ KPF ++ +LV R I Sbjct: 61 LQLLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLI--- 117 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 +I+ E+ M+ + I+ ++R+ I+VL+ GESG GKE++A +H Sbjct: 118 ------------PEQDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIH 165 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 +HSPR+ PF+A+N AAI + L+E+ELFGHEKGAFTGA + G+FE A+ GT+ LDEI Sbjct: 166 KHSPRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEIS 225 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +M +Q +LLRV+ + + RVGG P+ +DVRIIA T+++L + V++G FREDLF+R+N Sbjct: 226 EMAYRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRIN 285 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V + +PPLRER +DI LA FL+ + ++ + + + L + +W GNVR+LEN Sbjct: 286 VFPIRIPPLRERSDDIIPLAEFFLKRLSNKMSKNF-TITEDMKKFLLKKSWQGNVRELEN 344 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 V++ + + + LFE + Sbjct: 345 FIYRSAVLSQDGILRLHEDEINLFEEEKPVKAGK-------------------------- 378 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ER L+ AL+ T+G++ +AA++LG TL K+ E G++ Sbjct: 379 ---LKDAERELIVDALKKTEGNRTKAAKILGISVRTLRNKINEYGLK 422 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 170/472 (36%), Positives = 270/472 (57%), Gaps = 15/472 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VVDD+ +I + L+ G +G E L+ L S D++L DI+ P + Sbjct: 1 MIESRILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHI 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ +LK++K++ P L VIIMT + ++ AV A + GAFD++ KPF ++ V V +A+ Sbjct: 61 NGIDILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALE 120 Query: 121 HYQEQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + ++ +++ ++IIGE ++ +F I R+S +VL++GESGTGKEL Sbjct: 121 SIKLVKENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 A A+H S RA F+A++ + ++ESELFGH KGAFTGA T +G F A GTL Sbjct: 181 FAKAIHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDE+G++ LD+Q +LLRVL G++ VG K R++AAT++NL Q ++EG FRED Sbjct: 241 FLDEVGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFRED 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RLNV + +PPLRERR+D+P++A HFL++ R+ + + +AL WPGN Sbjct: 301 LFYRLNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VRQL+N L +M +++ ++L L VA L+ Sbjct: 361 VRQLKNVVERLVIMCDKEQLDHRELMDNLEIKPVALVRDIPLTL-----------EELKR 409 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ L ++ +ER L AL +G+ +AA+ +G R+ + +K+ + Sbjct: 410 ARKDFLEDSFRPVERLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKKNDI 461 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 160/472 (33%), Positives = 258/472 (54%), Gaps = 34/472 (7%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + +V+D++ R L + AG +G E L+ + + +++L+D+ +PGM+ Sbjct: 3 SHANILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMN 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ LL+ IK+ P VI++T H+ +D AV A Q+GA Y+ KP ++DE A V A+ Sbjct: 63 GIELLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNALER 122 Query: 122 YQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + ++ ++G++ + + + I +L+ +VLI GE+GTGKEL+ Sbjct: 123 QALSVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +H SPR++ F+A+N +L++ ELFGHE+ AFTGA ++G E A+GGT+F Sbjct: 183 ARGIHMLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQKGILEVANGGTVF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 DE+ ++PL++Q +LLRVL + F RVGG + VD+R+++AT+ +L++ V+ G FR+DL Sbjct: 243 FDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFRQDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 F+RLNV+ + PPLR+ REDIP L HFL+ E + ET L ++PGNV Sbjct: 303 FYRLNVVTLSAPPLRDHREDIPVLIGHFLEKHRTETQ-SIDTISQETLDILMNYSFPGNV 361 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN + +A G LP E+ + Sbjct: 362 RELENISQRALALARGTVFSPDLLPEEIRNIDRNKPL----------------------- 398 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 E+ER + + T G+K +AA++LG R +L RK+K LG+E Sbjct: 399 ------RTLEEVERDHIEKVMLATNGNKTQAAKILGIDRVSLWRKMKRLGLE 444 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 184/469 (39%), Positives = 269/469 (57%), Gaps = 26/469 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 RG + +VDD+++ R L L G T T +G + L L PDV+L+D++MPG+D Sbjct: 3 SRGRILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGLD 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ ++++ + P ++MTA + +AV A ++GA++YL KP D +VERA+ Sbjct: 63 GIRMMEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVER 122 Query: 122 YQEQQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + Q+ ++ +I P+M V R++ +++ S SVLI GE+GTGKEL+ Sbjct: 123 ARLLQENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKELI 182 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A +HR SPRAKAP + LN AA+ + L+ESELFGHE+GAFTGA R+GRFEQA GGTLF Sbjct: 183 AEMIHRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTLF 242 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+ ++PL Q +LLR L + F RVGG +KVDVRI+AA++++L QR+ EG FREDL Sbjct: 243 LDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFREDL 302 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 ++RLNV+ + +PPLRERR DIP LA FL A+E G + E +ALT ++PGNV Sbjct: 303 YYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFPGNV 362 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+LEN V+ G + ++ LP ++ + + Sbjct: 363 RELENAIERAAVLCDGARIELRHLPAQMSSEPAESVDAMPRVP----------------- 405 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +LER + L +G +AA +LG + KL E Sbjct: 406 -----GSTIYDLERYAILRTLEACKGSTSKAATILGISPRKIQYKLHEY 449 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 173/476 (36%), Positives = 264/476 (55%), Gaps = 35/476 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALAS-----KTPDVLLSDIRM 57 + + DDD +IR LE L G T NG++ + + D++L D+R+ Sbjct: 1 MKTILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRL 60 Query: 58 PGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117 GMDG +L +K++ P LP+I++TA+ ++ A+ A + GA D+L KP D+D ++++ Sbjct: 61 TGMDGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDK 120 Query: 118 AISHYQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 + + ++G AM++V++ IG ++ S +VLI GESGTG Sbjct: 121 IFEMSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTG 180 Query: 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 KE+VA A+H +S PFIA+ +A+ ++ESELFGHEKGAFTGA + G+FE A G Sbjct: 181 KEMVARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQG 240 Query: 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 GTLFLDEI ++ ++Q +LLR + + +F RVGG +K DVRI+AAT++NL V G F Sbjct: 241 GTLFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGMF 300 Query: 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 R DL++RL V+ + LPPLRER+EDIP L + L+ E G +++ ET + +W Sbjct: 301 RNDLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEHSW 360 Query: 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 PGNVR+LENT R +++ G +L + L E + Sbjct: 361 PGNVRELENTLRRAVILSHGNMLLPESLHLE--------------------------EGC 394 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 LL + E+ER + L + + K+ AA +LG R TL R++KE G+E Sbjct: 395 DGQERFPLLLKPLHEVEREHIQNVLCYVRNEKKRAAEILGISRPTLDRRIKEYGLE 450 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 199/475 (41%), Positives = 286/475 (60%), Gaps = 15/475 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT-PDVLLSDIRMPGMDG 62 + V+DDD+ IR+ L R L+ G T NG + + A+ PD++L D+RM GM G Sbjct: 8 ASILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDVRMSGMGG 67 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 + L+ I+ +P VI+MTA A+ A + GAFDY+ KPFD + +AL + A+ Sbjct: 68 IEALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALADAALKTR 127 Query: 123 QEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + + + I+G +P MQ+VF+IIG+++ S ++V+I GESGTGKELVA Sbjct: 128 ADLRAVSDYKPTINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESGTGKELVA 187 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 ++ +HS R+ PFIA+N AAIP +LIESELFGHEKG+FTGA R G+FE DGGT+FL Sbjct: 188 RSIWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELCDGGTIFL 247 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM L QT++LRVL G+ RVGG ++VDVR++AAT+++LE V+ FREDL+ Sbjct: 248 DEIGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAKTFREDLY 307 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RLNV+R+ +PPLRER EDIP++ LQ ++ A + PE AALTR +WPGNVR Sbjct: 308 YRLNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRHSWPGNVR 367 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE----------STSQMQPDSWATLLAQ 408 +LEN V+A G+ +L +DLP EL S + + L + Sbjct: 368 ELENVIYRSAVIAQGEAILEKDLPAELRTGLTEPVAAAESGAASERSAVTTRTEPALTRE 427 Query: 409 WADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 A + + + P LER L+ A+ G +AA+ LG + L ++L Sbjct: 428 RALDFVFASYAAEDEPLLPRLERELIDRAMTAAAGDAAKAAKQLGLTKAALQKRL 482 >UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q250F7_DESHY Length = 456 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 164/469 (34%), Positives = 257/469 (54%), Gaps = 21/469 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +V+D+ +L++ L + + L+ L + DV+L D R+P +GL+ Sbjct: 2 KLLIVEDEVDFATLLKQRLTRKKINIDLAHTIEQALDWLGKVSYDVILLDQRLPDGEGLS 61 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LL +K+ P + V+++T H L+ A+ + +QGA+DYL KP + + + +A + Sbjct: 62 LLTHVKEADPFVEVVVLTGHGSLETAIQSIKQGAYDYLTKPCNTTKLEFTLTQAYEKKRL 121 Query: 125 QQQP----RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +Q ++ + IIG++ ++ + +++ ++ S ++L+ GESG+GKEL+A + Sbjct: 122 AEQAAGLSEALRRQTGSEPIIGQSSEIKGLMQMVEKVKDSEATILVLGESGSGKELIARS 181 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R PF ALN AA+P L+ESELFGHEKGAFTGA ++ G E ADGGTLFLDE Sbjct: 182 LHFWSARKDKPFQALNCAALPNQLVESELFGHEKGAFTGAAGVKMGLIEIADGGTLFLDE 241 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 I +M LD+Q +LLR+L G+++RVG KV +R++AAT++ LEQ V G+FREDL+HR Sbjct: 242 IAEMDLDIQAKLLRLLEYGEYFRVGATRSRKVKLRVVAATNKRLEQEVAAGRFREDLYHR 301 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+++ +PPLR R+ DIP LA + L + K+L PE L +PGNVR+L Sbjct: 302 LNVVQIEVPPLRNRKADIPLLADYLLAQKCPQNN--PKVLSPEALEVLLSYDFPGNVREL 359 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N +++ G + + L QP + Sbjct: 360 ANILERGCLLSYGPTIEAEHL---------------FQPQMGKRTPVSKKGLEEEAPRWG 404 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 + ER + L+ +K +AA+ L G TL RK+KE G+E Sbjct: 405 DTDLSLENCERQHILRVLKMAGENKTKAAQELKIGLKTLYRKVKEYGIE 453 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 160/467 (34%), Positives = 260/467 (55%), Gaps = 30/467 (6%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +++D+ S+ ++ L + T NG E L+ L+ K DVL++DIRMPGM G Sbjct: 2 SILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGNE 61 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 ++++ + +P +PVII+TAH ++ AV+A ++GA+DYL KPF+ +E + +++A+ + Sbjct: 62 VMEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISRM 121 Query: 125 QQQPRNVQL---NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 +++ ++ ++G++ A + + ++ + VL+ GESGTGKEL+A + Sbjct: 122 RRENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQV 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA PFI +N AA+P+ L ESELFGH+KG+FT A+ +G+ +A+GGTLFLDEI Sbjct: 182 HSKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 G++P +Q +LLR L + + VG P+KVDVR++AAT+++L+Q ++G+FR+DLF+RL Sbjct: 242 GELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYRL 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 NV V +PPL +RREDI L F + L +W GN+R+LE Sbjct: 302 NVFPVEVPPLSKRREDIKDLVELFSAKYGAR-----ITFSEKAMEKLINYSWTGNIRELE 356 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 NT L ++ E+ LP E + H Sbjct: 357 NTIYRLCILQGKGEITEDKLPAEFCSN----------------------METCLDMHMPD 394 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ELE+ ++ AL G+K AA+ L R+ L +L++ + Sbjct: 395 KELNLEELEKNIIIKALHKFDGNKSRAAKYLCIPRHVLLYRLEKYEI 441 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 171/473 (36%), Positives = 250/473 (52%), Gaps = 31/473 (6%) Query: 1 MQRG--IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M R I+ +DDD +L L G + + ++ L + PD++++D+RMP Sbjct: 1 MPRPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMP 60 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 GMDG+A+L+ ++ P LPVI++TAH + AV+A + AF YL KPF +E L A Sbjct: 61 GMDGMAVLETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAA 120 Query: 119 ISHYQEQQQPRNVQ---LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 ++ Q+ R ++ I+ +PAM + + ++ S SV ++GESG+GKE Sbjct: 121 LAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVFLSGESGSGKE 180 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 VA A+H SPR PF+A+N AIP L ESELFGH KGAFTGA G A GGT Sbjct: 181 RVARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGT 240 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 LFLDEI D+PL +Q +LLRVL +G VG + VD+R+I+ATHQ++ +G FRE Sbjct: 241 LFLDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFRE 300 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DL++RL+VI + +P L ER EDIP LA+HFL ++ + + PE L + +WPG Sbjct: 301 DLYYRLHVIPLRVPSLSERAEDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPG 360 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 NVR+LEN + + V +P + + Sbjct: 361 NVRELENAVTFAAAVTEKGWVAADAIPDNGRQGGQSAFP--------------------- 399 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L +A+ ER L LR T G+ AAR+ G R L + +++ + Sbjct: 400 -----PLQDAKAAFERGYLENLLRATDGNISRAARIAGRHRTDLYKLMRKHSL 447 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 253/470 (53%), Gaps = 28/470 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+S +R +L L A + NG E L L + DV+L D+ MP +DG Sbjct: 6 KKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMPTLDGP 65 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 LK+++ R+ VI+M+A+ +LD AV ++GAFDY+ KPF DE V + +A + Sbjct: 66 GFLKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKAEERLR 125 Query: 124 EQQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 +++ ++ + ++ M+ ++GR ++ + VL+ GE+GTGKELVA Sbjct: 126 LREENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGKELVAR 185 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 ALH+ R PFIA+N + +I+SELFGH +GAFTGAN G F A+GGTLFLD Sbjct: 186 ALHQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGGTLFLD 245 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG++P+ +Q RLLR L + + VG P DVRI+AAT +NL++ + G+FR DLF Sbjct: 246 EIGELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFRSDLFF 305 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RL VI +HLPPLRER+ DI LA HFL A G L PE +L R AWPGNVR+ Sbjct: 306 RLAVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWPGNVRE 365 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N + ++ ++ LP E+ G Sbjct: 366 LANFMEKTAIFCRDDKICMEHLPWEIRRHPR------------------------DRGQD 401 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +A +E + AL T G++ +AA+LL L K++E +E Sbjct: 402 MSLKKAVSRIEPEYIRRALSVTGGNRTKAAQLLDISLRNLHYKIREYDLE 451 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 182/476 (38%), Positives = 261/476 (54%), Gaps = 15/476 (3%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAG------LTCTTFENGAEVLEALASKTPDVLLSDIR 56 + +VDDD S+ L+ T + A L A P V++ D+ Sbjct: 1 METLLIVDDDVSLLETLKMHFEEIEQDGQPRYQVATATSAAAGLRAAQEAMPSVVILDMM 60 Query: 57 MPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALV 115 +P GL +++++K +I++TA+ D++ + A + GAFDY+ KPF D +V Sbjct: 61 LPDRTGLEIIEEMKGLCGDARIILVTAYHDMETTIRAMKAGAFDYIHKPFPDPAALDLVV 120 Query: 116 ERAISHYQEQQ---QPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGT 172 ERA+ + Q + + DI+G +P MQ + + IG+++ S +VLI GESGT Sbjct: 121 ERALEYRQLSRRADEVHRENAAARLGDIVGTSPLMQQLVKEIGKVTGSHATVLITGESGT 180 Query: 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD 232 GKEL+A +H +S PFI +N +AI L+ESELFGHEKGAFTGA + G+FE A+ Sbjct: 181 GKELIARVIHNYSYDEPRPFIGINCSAIVDTLLESELFGHEKGAFTGATAGKPGKFELAE 240 Query: 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 GT+FLDEIGDM L +Q +LLRVL + +F RVGG +K+ R+IAATH+ L + V+ G+ Sbjct: 241 DGTVFLDEIGDMSLMLQAKLLRVLQEREFERVGGVKRIKLRARVIAATHRALVEEVEAGR 300 Query: 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 FREDL+ RL VI + +PPLRERREDIP L +H L+ ++ + E LTRL Sbjct: 301 FREDLYQRLKVITLQIPPLRERREDIPPLVKHLLERINEKVHKRVTRVPGEVMERLTRLP 360 Query: 353 WPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADR 412 W GNVR+LEN V+A G + DLP E A+ + Sbjct: 361 WRGNVRELENVLTRAVVLAPGDVLRGDDLPALESPLPSPEPGRATSAHHTASAM-----F 415 Query: 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A + L E ER L+ A+ T+GHK ++LG R TL RKL++ G+ Sbjct: 416 AAPAEDDASLIPTLEEAERQLIARAMTVTKGHKGRTCQILGISRPTLERKLQKYGL 471 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 175/459 (38%), Positives = 248/459 (54%), Gaps = 15/459 (3%) Query: 9 VDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQ 68 V+D +S+ + L G+ G + +++L + PD++L D+R+P M G+ +L Sbjct: 2 VEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHA 61 Query: 69 IKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP 128 +K HP +P+I MTAH +D AV A + G+ D+L KP + D V AI + + Sbjct: 62 VKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 129 RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA 188 + + IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S R Sbjct: 122 ADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRG 181 Query: 189 KAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDV 248 PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M LD+ Sbjct: 182 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL 241 Query: 249 QTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHL 308 QT+LLR + G F +VG VDVR + AT+++ + VQEG+FREDL++RL VI +HL Sbjct: 242 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 301 Query: 309 PPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLT 368 PPLRER ED+ +A L + E G WPGNVRQL+N R + Sbjct: 302 PPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVV 361 Query: 369 VMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPE 428 V+ G+E+ ++ LP L + + + Q ++ Sbjct: 362 VLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRDICP---------------LWL 406 Query: 429 LERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+ + A++ G+ AA L +T+ RKL+ Sbjct: 407 TEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWN 445 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 186/468 (39%), Positives = 268/468 (57%), Gaps = 3/468 (0%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP-GMD 61 V +VDD+ +IR ++ L+ G +G+ L + PDV L D+ MP +D Sbjct: 1 MPSVLIVDDEPNIRRMVGALLSSEGYDVRDASDGSTGLALAETSEPDVALIDLMMPGDLD 60 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL+++++R P +PV++M+ + L AV A + GAF +L KP + + + A Sbjct: 61 GLGLLEKLRERRPDMPVVMMSGRAALTDAVRATRLGAFTFLEKPLTPEGVLLALASAFEL 120 Query: 122 YQEQQQPRNVQLNGP-TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Q ++ ++ + + ++IG++PAM+DV ++ R+ + VLI GESGTGKEL A A Sbjct: 121 RQARRAAAALREDLGISGEMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAA 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R PF+ +N AAIP+DL+ESE+FGHE+GAFTGA R GRFE A GTLFLDE Sbjct: 181 LHVSSARRDRPFVRVNCAAIPRDLVESEMFGHERGAFTGATERRIGRFELAHTGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GD+ + Q +LLR + + RVGG P+KVDVRI+AAT+++L + V +G FREDLF R Sbjct: 241 VGDLGAEAQAKLLRAIEAREIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI +HLPPLR+R D+P L RHF G H AL+ WPGN+R+L Sbjct: 301 LNVIPIHLPPLRDRPGDLPALVRHFSARHRTRTGRPLVQWHESALGALSAYRWPGNIREL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N L ++ AG EV ++ L E+ + P + S Sbjct: 361 ANVVERLAILHAGSEVTRTEVRQVLPETAALPGATSAVPSGTEAGT-EVDTPDPASAAHM 419 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 LS+A ER L++ AL + G+ EAAR L R L R+++ LG+ Sbjct: 420 PLSDALDAYERRLISAALAQSDGNVAEAARRLQTDRPNLYRRMRRLGL 467 >UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZS60_9PLAN Length = 479 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 175/471 (37%), Positives = 282/471 (59%), Gaps = 7/471 (1%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + VVDDD ++ +++R G+ + T + AEV+ + + DVLL DI +P + G Sbjct: 1 MTQILVVDDDRAVARLVQRCFEGSNVDVLTAQRAAEVIPLIENHAVDVLLLDIMLPEISG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L + +QI++ LP+I +T D + + A + GA+DYL KP D+ LVERAI + Sbjct: 61 LEIARQIRKIDSKLPIIFVTGRDDSETTIEAMKLGAYDYLVKPLDVGMVQELVERAIENR 120 Query: 123 QEQQQPRNVQLNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + +P + + ++G +P M V++ +GR++ +++VL+ GESG+GKEL+ Sbjct: 121 RLMHEPVVLTPQQADENETGDLLVGRSPQMLGVYKEVGRVAAQNVNVLVRGESGSGKELI 180 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+++HS R PF+A+N AA+ + L+ESELFGHEKGAFTGA++ R G+FEQ +GGT+F Sbjct: 181 ARAIYQHSNRNDQPFLAVNCAALSETLLESELFGHEKGAFTGADSRRIGKFEQCNGGTIF 240 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDE+GDM L +Q ++LR+L D +F R+GG + DVRII+AT+++LE+ + +G FR DL Sbjct: 241 LDEVGDMSLTIQAKVLRLLQDQRFERLGGAETITTDVRIISATNRDLEEMIADGDFRLDL 300 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 FHRL + +PPLR+R D+ +L ++FL+ ++LG E L E+ L WPGN+ Sbjct: 301 FHRLKSFEIAIPPLRDRDGDLEQLVQYFLKQFNKQLGKEITGLSAESLVRLKSYDWPGNI 360 Query: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSG 417 R+L+ R +MA + + LP E+F + + + G Sbjct: 361 RELQGVLRKSMLMATSTVLAPEWLPPEVFGEAAPMRGDS--SGNQDDAFDVFLGQLESRG 418 Query: 418 HQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +++ +E+ +E LL+ L T G++ +AA LLG R +L K++ LG+ Sbjct: 419 SEDMYAESLEWMEHRLLSFVLDKTAGNQSKAAVLLGITRGSLRHKMRALGI 469 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 168/463 (36%), Positives = 256/463 (55%), Gaps = 29/463 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G V +VDD+ + VL L G + + AE +AL+ + D +++D++MPG DG+ Sbjct: 7 GKVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGI 66 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 L+ + + +P +P+I +TA+ +D+AV A +GAF Y KP D + ++ RA+ Sbjct: 67 QLMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQRS 126 Query: 124 EQQQPRNVQLNGP---TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 +++ ++ I+G P M +F + + S SVLI GE+GTGKEL+A + Sbjct: 127 LKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARS 186 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S R PF+A+N AA+P++LIESELFG+EKGAF+GA + R GRFE+A GT+FLDE Sbjct: 187 LHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIFLDE 246 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ + +Q +LLRVL + + R+G +KV+ R+I++T++N+ + G FREDLF+R Sbjct: 247 IGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDLFYR 306 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV++V +PPLR+RREDIP LA ++ G E WPGN+RQL Sbjct: 307 LNVVQVQVPPLRDRREDIPLLAAELVREYGAREGK-VLRFDDEVMQVFLNYDWPGNIRQL 365 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N V+A + ++LP EL V + Q Sbjct: 366 GNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQV---------------------- 403 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 ELE + AL + G+K AA++LG R L ++L Sbjct: 404 ---RTLRELEEAAILAALEESGGNKSHAAKMLGISRKALYKRL 443 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 187/479 (39%), Positives = 267/479 (55%), Gaps = 40/479 (8%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRM-----P 58 V V DD + + L L GLT T ++ A L L ++ D++L D+ Sbjct: 23 PCVLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYARDTTS 82 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE-- 116 G +G+ LL +I+ + LPV++MTA ++ AV A + GA DY+ KP+D +A + Sbjct: 83 GQEGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLATLRTQ 142 Query: 117 ----RAISH-YQEQQQPRNVQL-NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGES 170 RA+ + +++ ++++ G ++ E+ +MQ V R+I R++ S +VL+ GE Sbjct: 143 LELRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLVTGEH 202 Query: 171 GTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ 230 GTGKE+VA +H S R++ F+A+N + + + ESELFGH KGAFT A + R G FE Sbjct: 203 GTGKEVVARLIHGGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDAKSDRIGCFEL 262 Query: 231 ADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQE 290 ADGGTLFLDEIG+MPL Q +LLRVL G+ + VG +VDVR+++AT+ +L + V E Sbjct: 263 ADGGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATNVDLSRAVAE 322 Query: 291 GKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 G+FREDL +RLN + V LPPLRERREDIP LA HFL R G L E AL Sbjct: 323 GRFREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNVRLSSEALEALLA 382 Query: 351 LAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWA 410 AWPGNVR+LE+ +MA+G EV +DL Sbjct: 383 YAWPGNVRELEHAVERAMLMASGDEVTQEDL---------------------------LL 415 Query: 411 DRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 RA R G L E+ER L+ AL +G+ EAA+ LG R+ L R+L+ G++ Sbjct: 416 KRAGREGMARLEEMTLEEVERYLIERALARHEGNVSEAAKGLGLSRSALYRRLQYYGIK 474 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 200/468 (42%), Positives = 281/468 (60%), Gaps = 9/468 (1%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ +VDDD IRW+L++ L G+ + AE ALA V D+ +P Sbjct: 1 MKM-RALIVDDDEGIRWILDKVLQEEGVDVVQAGSIAEAKAALADGDFSVTFLDVYLPDG 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 +G+ LL +PV+++TA + A AY+ GA +YLPKPFD+DE L+ R Sbjct: 60 NGMDLL----ASGLSMPVVMLTAETTFGHAAEAYRMGAMEYLPKPFDLDEVRQLLSRV-- 113 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + Q+ IIG +PAMQ +FR +GR++ S ++VLI GESGTGKE+VA Sbjct: 114 --RPAQKASAPAQKMADGLIIGRSPAMQQMFRTLGRVASSDLTVLITGESGTGKEMVAKT 171 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH S RA F+A+N AAIP DL+ESELFGHEKG+FTGA+ +R+GRF QADGGTLFLDE Sbjct: 172 LHERSQRADKAFVAINTAAIPADLLESELFGHEKGSFTGADKMREGRFVQADGGTLFLDE 231 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMPL +Q +LLRVL +G+ RVGG V+VR++AATHQNL ++ +G+FREDL++R Sbjct: 232 IGDMPLALQAKLLRVLEEGRVQRVGGSESKVVNVRLLAATHQNLNTKIAKGEFREDLYYR 291 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI V +PPLR+RR+DIP LA L+ A +ELG+E +L + L+R WPGNVR+L Sbjct: 292 LNVIPVQIPPLRDRRDDIPELANFLLEQAVKELGMEQPILLDDAMDLLSRHDWPGNVREL 351 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 +N R L V+ G + + D+ L + D+ Q+ + + N Sbjct: 352 KNVMRRLAVLTPGATITLTDVALALGNVDNHTGEEETLADAVTRCTRQYLHQLGYASATN 411 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L ++E LL AL G++ + + +LG RNT+ + L + + Sbjct: 412 LHQHLLEQIEPPLLVLALEQCNGNQLKVSEMLGLNRNTVRKLLNKYNI 459 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 174/473 (36%), Positives = 266/473 (56%), Gaps = 34/473 (7%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + VV+DD+ +L L G T +G E L + + D++LSD++MP Sbjct: 1 MS-ANILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVK 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF-DIDEAVALVERAI 119 GL L ++ +Q I +TA ++ AV+A ++GAFD+L KP D V+RA+ Sbjct: 60 SGLELFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRAL 119 Query: 120 SHYQEQQQPRNV----QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175 + ++ ++ + P ++I AM V ++I ++ S+ +VLI+GESGTGKE Sbjct: 120 ESVERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKE 179 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 LVA +H S R A FI LN AAIP++L+ESELFGHEKGAFTGA R+G+FE A+GGT Sbjct: 180 LVARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGT 239 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 +FLDEIG+MP +Q +LLRVL + F RVGG ++ +VR+IAAT+++L + V E +FR+ Sbjct: 240 IFLDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRD 299 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV + +PPLR R + + LAR+F A + G + K ++PE + WPG Sbjct: 300 DLFYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L+N ++A +E+ +LP + Sbjct: 360 NIRELQNVIERGVILAR-EELTAPELPAMIAGKETEGGPKVGI----------------- 401 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ER + AL++ +G+++ AA LG + TL +LKELG+ Sbjct: 402 ----------LKDIERNCILEALKNNRGNRRMAAETLGISKRTLQYRLKELGL 444 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 184/470 (39%), Positives = 257/470 (54%), Gaps = 36/470 (7%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + V VVDD+ +R L RALA G T E+ E E LA+ D+++ DI +PG Sbjct: 11 PQQSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPGKA 70 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L+ + VI++TA +D+ A+ A + GA D++ KPF ID+ + + R+ Sbjct: 71 GIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRSTER 130 Query: 122 YQEQQQPRNVQLN-----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + ++ ++ + +IG +PA+ + +I+ R++ + +VLI GESG GKE+ Sbjct: 131 ARLARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGKEV 190 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA ALH+ SPRA+ PF+A+N AAI +LIESELFGH KGAFTGA R G F A GGTL Sbjct: 191 VARALHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGGTL 250 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG++PL +Q+RLLRVL + + VG V VDVR++AAT+++L V +FRED Sbjct: 251 FLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFRED 310 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 LF+RL VI + +PPLRER ED+P LA F+Q A +LG+ L+ PE A L WPGN Sbjct: 311 LFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWPGN 370 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 VR+L N + D P LA A Sbjct: 371 VRELRNFVERSLLF--------GDFP-----------------------LASLAGAVAPP 399 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + E+E+ + L G+K AA LLG R TL RK E Sbjct: 400 PPASAAPLLLEEVEKRHILAVLDQCGGNKTRAAELLGVSRKTLERKCAEW 449 >UniRef50_Q7UEQ9 NtrC-like response regulator SasR n=1 Tax=Rhodopirellula baltica RepID=Q7UEQ9_RHOBA Length = 491 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 167/484 (34%), Positives = 256/484 (52%), Gaps = 26/484 (5%) Query: 1 MQRG--IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP 58 M + + +VDD+ R + + G T +GAE + L + DV + DI MP Sbjct: 6 MSQTAIKILLVDDEDDYRRSCGKFMERMGHTVRLAASGAEAMSFLDREAFDVAVFDIDMP 65 Query: 59 GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 GM GL L++++ + + V+ +T ++A V A Q GA D+L KP + + V+ A Sbjct: 66 GMSGLELMQRVHEESHDVEVVFLTGKGTIEACVQAMQMGACDFLTKPCSLADLEHRVQLA 125 Query: 119 ISHYQEQQQPRNVQ----LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 +++ + ++ N P+ +IG + AM+++ R+I +++ + VLI GESGTGK Sbjct: 126 QQRGHLKKENQQLKAIVHRNRPSPKLIGNSLAMKELSRMIAKVAPTRKPVLIEGESGTGK 185 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E+VA ++ + S A PF+ +N AA+P L+ESELFGH+KG+FTGA + G FE ADGG Sbjct: 186 EVVARSVQQQSDLADRPFVTINCAALPAQLVESELFGHQKGSFTGATADQPGLFEVADGG 245 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TLF+DE+G++P +Q +LLRVL DG R+G + KV VR+IAAT+++L + V+ G+FR Sbjct: 246 TLFIDEVGELPPALQPKLLRVLEDGSLRRIGCHRERKVKVRLIAATNRDLLEEVKAGRFR 305 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL +R+NV+ ++LPPLR+R DI L HFL E + + WP Sbjct: 306 EDLLYRINVLTLNLPPLRQREGDIELLLHHFLPR--------GWSFDKEALDTMVQYHWP 357 Query: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQP------------DSW 402 GNVRQL N T++A Q + + DLP EL + P Sbjct: 358 GNVRQLINVVERATILADHQVITMDDLPRELSNLPSNSGSFAASPIHADASHLGQDLTCE 417 Query: 403 ATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRK 462 + + + S +L +T + L G+K + AR LG R L R Sbjct: 418 DPIDEESTAESAPPLMLGDSSLKVDDLIKTHVLKVLEQLGGNKAKTARHLGIHRRKLYRL 477 Query: 463 LKEL 466 L+ Sbjct: 478 LERF 481 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 177/472 (37%), Positives = 258/472 (54%), Gaps = 27/472 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ V VVDD++ L LA G +G + LA + D++L+D+RM G+ Sbjct: 1 MKGASVLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGL 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DGLA+L + K+ P V++MT H+ + +AV A + GA YL KP+ + E A V A+ Sbjct: 61 DGLAVLGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMD 120 Query: 121 HYQEQQQPRNVQLNGPTTD----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKEL 176 + + + + IIGE+PA+Q + I ++ + +VLI GE+GTGKEL Sbjct: 121 KRRLRLEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKEL 180 Query: 177 VAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 VA A+H + F+A+N A ++L+ SELFGHEKGAF+GA ++++G FE A GTL Sbjct: 181 VARAIHAAGLQRANRFLAVNCGAFTEELLTSELFGHEKGAFSGAMSLKKGLFEVAGEGTL 240 Query: 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296 FLDEIG+M +Q RLLRVL + F+RVGG + V RI+AAT+++L+ V+ G FR D Sbjct: 241 FLDEIGEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGLFRAD 300 Query: 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 L++RLNVI + +PPL RR+DIP LA F AR + E L +PGN Sbjct: 301 LYYRLNVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVTGFSAEAVRRLMAYEYPGN 360 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS 416 +R+LEN + +MA G+ + DLP +L A + + Sbjct: 361 IRELENIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELI--------------- 405 Query: 417 GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 A ELER + L + G+K AA +LG R +L RK+K LG+ Sbjct: 406 --------ALEELERRHIRDILTYCDGNKTRAAEILGIDRVSLWRKVKRLGL 449 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 179/461 (38%), Positives = 262/461 (56%), Gaps = 19/461 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + + +DD +R + AL AG T +GA+ L A+ + D++L+D+R+PG+DGL Sbjct: 2 KLLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLT 61 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 L ++ ++ P V++MTA++D D AVS ++GA DY+ KPF++DE + ++R + Sbjct: 62 LFRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHAF 121 Query: 125 QQQPRNVQLNGPT-TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 ++ + GP ++G++ M+ V + + S + VL+ GE+GTGK+L A +H Sbjct: 122 RKGMQAGAPPGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHE 181 Query: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 S RA PF+ +N AAIP+ L ESELFGHEKGAFTGA+ R GRFE ADGGTLFLDE+G+ Sbjct: 182 RSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGE 241 Query: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 + Q +LLR L F VG V+VDVR+IAAT+++L + G FR+DL++RLNV Sbjct: 242 LAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNV 301 Query: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 I +H PPLRERR D+P L FL A LG L P AAL +PGNVR+L++ Sbjct: 302 IDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHA 361 Query: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 +A G + ++ LP +L A + L Sbjct: 362 LERAVALARGGPIRLEHLPPDLAGPLPAGEAAPAGEGLAR------------------LG 403 Query: 424 EAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 EA + E+ + AL T GH+ AA LLG R +L +L+ Sbjct: 404 EAVEQFEQQYIRRALEKTGGHRARAAALLGISRKSLWERLR 444 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 173/463 (37%), Positives = 266/463 (57%), Gaps = 7/463 (1%) Query: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67 +VDD+ I +LE LA L+ N A+ E L PD+ L+D+++P +G++L++ Sbjct: 2 LVDDEPDILRLLEITLARMNLSTLRATNLADAYELLRQHEPDLCLTDMKLPDGNGMSLIE 61 Query: 68 QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 I+ +P +PV ++TAH ++AA+ A + GAFD++ KP +++ +V A+ Sbjct: 62 HIQTHYPTIPVAMITAHGSVEAAIDALKLGAFDFVSKPIALEKLRDIVNHALQVK----- 116 Query: 128 PRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187 ++G+ PAM+ + I +++RS V I+GESG GKE+VA +H+ SPR Sbjct: 117 -DAGDDAASDQLLVGDTPAMERLRLQIQKVARSQAPVHIHGESGVGKEVVARLIHQLSPR 175 Query: 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD 247 A+ PFIA+N AIP DL+ESELFGH+KG+FTGA + G F+ A GGTL LDE+ D+PL+ Sbjct: 176 AEQPFIAVNCGAIPADLVESELFGHKKGSFTGAAADKPGLFQAAAGGTLLLDEVADLPLN 235 Query: 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 VQ +LLRV+ + VG V DVR+++ATH++L V++G FR+DLF+R+NVI + Sbjct: 236 VQVKLLRVIQEKAVRPVGAQQEVPTDVRLLSATHKDLSLAVRDGHFRDDLFYRINVIAID 295 Query: 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWL 367 +P LR+RREDIP LA H LQ A + G +A + L +PGNVR+LEN Sbjct: 296 VPSLRKRREDIPLLATHLLQRIAMDNGSDAINIDTAALTKLCDYDFPGNVRELENILARA 355 Query: 368 TVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR-SGHQNLLSEAQ 426 +A G E+ I D+ + ++ +S+ + S L Sbjct: 356 HALADGGELTIDDIQFQTMGASEITEHHAKSDESYPEEPPHVPSGRIDLSDVNGDLESFL 415 Query: 427 PELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER +L A+ + +K AA+ LG +L +LK+LG+E Sbjct: 416 NTIEREVLDQAMLKHRWNKTAAAKALGISFRSLRYRLKKLGLE 458 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 256/477 (53%), Gaps = 32/477 (6%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + VVDD+ + LE L G L + PD++L D+ +P DG Sbjct: 7 RYKIVVVDDERPVLLTLEALLTRHGYEPQLAHTATAGLAIVRKSKPDLVLLDLGLPDADG 66 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +LK++K P LPVII+TA+ L AV + +QGAF ++ KP+ ++E ++L+ RAI Sbjct: 67 LDVLKELKAELPQLPVIILTANDSLSNAVESIKQGAFHFISKPYAVEELLSLITRAIEQR 126 Query: 123 QEQQQPRNVQLNGPTTD-----------IIGEAPAMQDVFRIIGRLSRSSISVLINGESG 171 Q Q++ ++ + ++ +M++V ++ R + + +VL+ GESG Sbjct: 127 QLQREAETLREEKQELSRRLAHAERQLAPVAQSRSMRNVRDLVERFAPTDANVLLLGESG 186 Query: 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA 231 GKE+VA+ +HR S RA P + LN AA P ++IE ELFG+ KGAFTGA G QA Sbjct: 187 VGKEVVANQVHRLSRRADGPMVKLNCAAFPANMIEGELFGYVKGAFTGAVADFPGMIAQA 246 Query: 232 DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 GGTLFLDEI +MP+++QTR LRVL + +F R+G + + R++AAT++N + V+ G Sbjct: 247 TGGTLFLDEIAEMPVELQTRFLRVLQEREFRRLGSTKTIPANFRLVAATNRNAAEAVRNG 306 Query: 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 R+DL++RLN ++ +P LRERREDIP L FL A+++G + PE L Sbjct: 307 TLRQDLYYRLNTFQIEIPALRERREDIPALVAVFLARFAKQMGKPEPTIAPEAFDRLLNY 366 Query: 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWAD 411 WPGNVR+L+N + V+A + +++LP E+ + Sbjct: 367 DWPGNVRELQNAIEYSVVLADQALITVKELPREIQLPAALHEARAANAAASLN------- 419 Query: 412 RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + ER + AL G+K++AA +LG R TL K+K G+ Sbjct: 420 --------------LEDQERQAILQALTQAHGNKKKAAAILGIHRPTLYNKMKHHGI 462 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 178/467 (38%), Positives = 262/467 (56%), Gaps = 34/467 (7%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 R + V+DDD+ IR +L + L + + ++GA + EA+ P+++L D ++P G Sbjct: 2 RANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDATG 61 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L LL IK+ P VI++T H+ D AV A ++GAF + KPFD + + L++RA+ Sbjct: 62 LDLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRALEIR 121 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 ++ T + I + M++V R + R++ S +S+LI GESGTGKE++A +H Sbjct: 122 S-------LREAVSTGNAIFQCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIH 174 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 S RA P I +N AA+P++LIESELFG KGAFTGA++ R+G F QA+GGTL LDE+ Sbjct: 175 SSSHRASGPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELS 234 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +MP+D Q++LLRVL + + VGG K D RIIAAT++ E+ +++GK REDLF+R++ Sbjct: 235 EMPIDTQSKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRIS 294 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 + VHLPPLRERREDI LA FL+ + + + PE L WPGNVRQL+N Sbjct: 295 AVSVHLPPLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQN 354 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 + ++ G+ V DL + Sbjct: 355 EVQRAVLLCEGKLVDAPDL---------------------------SITAPANESTGDTS 387 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 +ER + L+ T G+K E A+ LG GR TL K+K G+E Sbjct: 388 YTLLEGVERNTIVQMLKETGGNKLETAKRLGIGRQTLYNKIKAYGIE 434 >UniRef50_D2R521 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R521_9PLAN Length = 474 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 179/466 (38%), Positives = 260/466 (55%), Gaps = 17/466 (3%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G + VVDD++ R + L AG + E L+ L S+ D++L+D++MPGMDGL Sbjct: 12 GRILVVDDNARARQSMCDVLRHAGNDVQMCASAIEALQKLPSQEFDLILTDLQMPGMDGL 71 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 ++ ++ R V+++TA + + +AV A + GA DYL KPFD D+ LV+RA++ + Sbjct: 72 QFIRALQDRKIDSQVVMVTAFASVSSAVEAMRHGALDYLEKPFDADQLEQLVQRALARGR 131 Query: 124 EQQQPRNVQLNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 V + +IG + AMQ + I + + +VLI+GESGTGKELVA + Sbjct: 132 RGAAHSAVTSSSQPWHSMMIGTSSAMQRLRSQIAVAAPTGETVLISGESGTGKELVARCV 191 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 H S RA ++LN A+ L+ESELFGHE+GAFT A+ R GRFE ADGGT+ LDEI Sbjct: 192 HAASGRATKALVSLNCPALSPQLMESELFGHERGAFTSADAPRVGRFELADGGTILLDEI 251 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++ L +Q +LLRVL + F RVG ++VDVR+IA T++ + Q V G+FR+DLF+RL Sbjct: 252 TEIELPLQAKLLRVLQEKSFERVGSSETLEVDVRVIATTNREIRQEVVAGRFRQDLFYRL 311 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 V+ + +P LR+RRED+P L HFL AA L + L WPGNVR+LE Sbjct: 312 AVVPLVVPALRDRREDVPLLVEHFLGAAAVRLERSPITVDRAASDLLCSYHWPGNVRELE 371 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N +++A +++ DL L E S + L A Sbjct: 372 NLMTRASILATSEKLSADDLRSWLLEPEAMHSAGSGNSSGESELQAGMK----------- 420 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 ++ER L+ L H +GH+ AA+ LG G TL+ KL++ G Sbjct: 421 ----LEDMERRLIEATLDHYEGHRARAAQALGIGIRTLSNKLRQYG 462 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 165/469 (35%), Positives = 249/469 (53%), Gaps = 26/469 (5%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 + + VVDDD I V+E L+ +G E L+ L + D++++D+RMPGM Sbjct: 3 TKRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGMG 62 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L +I+ H LPVI +TA+ + AV A + GA DYL KPFD + V V+ + Sbjct: 63 GMDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILRK 122 Query: 122 -YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + G++ +M+++ ++ R++ S ++VLI GESG GKE VA Sbjct: 123 PVPHLPAQETISPKHEFWG--GKSASMRELQDLVERIAPSDVNVLILGESGVGKERVARL 180 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H+ PR PF+ ++ + P L+ESELFGH +GAFT A ++G E A+ GTLFLDE Sbjct: 181 IHQKGPRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLDE 240 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++ ++Q RLLR L D + R+G + V+ R+IAAT+ +L + V+ G FREDL++R Sbjct: 241 IGNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYYR 300 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L V+ + +PPLRERREDIP LA+HFLQ + L ET L+ WPGNVR+L Sbjct: 301 LRVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETIRWLSEYPWPGNVREL 360 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 +N V+ + DL + + Sbjct: 361 KNALEAGAVLCRESVLRPSDLHLSGLPHAPLKPHVSVGD--------------------- 399 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 S + E ER + AL+ +++AA+LLG R + K+K+ G+E Sbjct: 400 --SLSLEESERNAIVRALQQAGWVQKDAAQLLGISRRAINYKIKKYGIE 446 >UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=17 Tax=Acinetobacter RepID=B0VDC3_ACIBY Length = 473 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 259/468 (55%), Gaps = 5/468 (1%) Query: 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMD 61 Q+ +V +VDD+ + +++ LA G+ + + D L+D+ +P Sbjct: 4 QQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGS 63 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G+ L+K + Q + P+ ++TA+ ++D A++A + GAFD++ KP + L+++A++ Sbjct: 64 GIDLVKHVSQNYTNTPIAVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNR 123 Query: 122 YQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 + + + +IG + +Q + I +++RS V + GESGTGKE+VA+ + Sbjct: 124 QKV--EHDAAENALENKLLIGRSLPIQQLRIAIKKIARSQAPVFVTGESGTGKEVVANLV 181 Query: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241 HR S R++ PFIA+N AIP +L+ESELFGH+KG+FTGA +QG A GG+LFLDEI Sbjct: 182 HRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDEI 241 Query: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 ++PL +Q +LLR + + + VG + VD R+I+A+HQ+L+ V++GKFR+DLF R+ Sbjct: 242 AELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRI 301 Query: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 +V+ + LPPLRER ED+ LA HF+Q E K L E L + +PGNVR+L Sbjct: 302 HVMDLILPPLRERGEDVLLLANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELR 361 Query: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNL 421 N ++ + I L + ++ + T+ A + L S Sbjct: 362 NMIERAITLSEDATIDISHLHPAPLRANISNPFVSATQNIQTTVAAPQVVKKLPSEG--- 418 Query: 422 LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L +E+ +L AL T ++ AA+ LG +L +LK+ G++ Sbjct: 419 LERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLD 466 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 592 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 173/459 (37%), Positives = 249/459 (54%), Gaps = 15/459 (3%) Query: 9 VDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQ 68 V+D +S+ + L + G + +E++ + PD++L D+R+P M G+ +L Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYA 61 Query: 69 IKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP 128 +K++ P +P++ MTAH +D AV A + GA D+L KP + D V AI + + Sbjct: 62 VKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKAS-KLKN 120 Query: 129 RNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA 188 N IG + MQ V+R I + S S+ I GESGTGKE+ A A+H S R Sbjct: 121 DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRG 180 Query: 189 KAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDV 248 PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG E ADGGTLFLDE+ +M LD+ Sbjct: 181 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL 240 Query: 249 QTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHL 308 QT+LLR + G F +VG VDVR + AT+++ + VQEG+FREDL++RL VI +HL Sbjct: 241 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 300 Query: 309 PPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLT 368 PPLR R +D+ +A L ++E G + L E + WPGNVRQL+N R + Sbjct: 301 PPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVV 360 Query: 369 VMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPE 428 V+ G+E+ + LP L + + + + + + Sbjct: 361 VLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFP--------------LWM 406 Query: 429 LERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467 E+ + A+ G+ AA L +T+ RKL+ Sbjct: 407 TEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWN 445 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 193/468 (41%), Positives = 271/468 (57%), Gaps = 26/468 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M+ + +V+D+ ++R VL L G + E+ + L +A + P ++L+D R+PGM Sbjct: 1 MRSQKILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 G LL +IK+R P PV+I TA+ +++ AV A + GA YL KP D E VA++ +A+S Sbjct: 61 SGTELLARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALS 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 PR + P IIGE+P ++ +I ++ + +VLI GESGTGKE+VA Sbjct: 121 CRGHTNPPR--SQDLPRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARG 178 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH SPRA APF+A N AIP DL+ESE+FGHEKGAFTGA + G+ E A GTLFLDE Sbjct: 179 LHVASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDE 238 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 +GDMPL +Q +LLR L + ++ R+GG P+++ RIIAATH +L + V+ G FREDL++R Sbjct: 239 VGDMPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYR 298 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNVI +H+PPLRERRED+ L HFL+ ELG + AA+ +WPGN+RQL Sbjct: 299 LNVIPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQL 358 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN L V+ G +L DLP E+ + Sbjct: 359 ENIVERLVVLNRGGTILAADLPNEMRTTETERIRPFGGAYD------------------- 399 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 +ER + +AL Q +K +AA LLG R L ++K LG+ Sbjct: 400 -----LHAVEREAVVSALNKAQSNKSQAALLLGISRKQLHTRMKNLGL 442 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 257/468 (54%), Gaps = 23/468 (4%) Query: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLA 64 + +V+D+ +R + AL G T ++G + D+++SD+ MP M G+ Sbjct: 7 RLLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMPQMGGMD 66 Query: 65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE 124 LLK++K P V+I+TAH ++ AV A ++GA D++ KPF + + V + S Sbjct: 67 LLKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNVCSTRLL 126 Query: 125 QQQPRNVQLN----GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++Q +Q ++IG++ AM++VF +I ++ S SVL+ GESGTGKE+VA A Sbjct: 127 REQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGKEMVAAA 186 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H +S R ++ ++ A++P+ LIESELFG+E+GAFTGAN R GRFE A GGTLFLDE Sbjct: 187 VHYNSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANERRIGRFEAASGGTLFLDE 246 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IG++PL Q +LLR L + Q R+G PV V+VRI++A+ + LE + G+FREDLF R Sbjct: 247 IGELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFREDLFFR 306 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 +N + + LPPLR+R ED+P LA FLQ A E +E + E W GNVR+L Sbjct: 307 INTVAICLPPLRKRLEDVPILAASFLQEFAEERKLEIEGFSDEVLEVFDAHPWTGNVREL 366 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 N + G +V + D+P + + + Sbjct: 367 RNVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRD-------------------KVM 407 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + EA + E + AL T G + +AA LLG R TL K+K + Sbjct: 408 TMHEAVEKAEVRAIRAALASTGGRRADAADLLGVSRKTLWEKIKHHDV 455 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 181/500 (36%), Positives = 266/500 (53%), Gaps = 34/500 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT--PDVLLSDIRMPGMD 61 + V+DDD R +L + G +NG LE + K +V+L D+ MPGM+ Sbjct: 41 AHILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELMQRKGGIINVILLDLLMPGMN 100 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 G + L+ + +R PVI+ T ++ V A Q GAFD+L KP + + A+ Sbjct: 101 GHSFLEALAERGVDTPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKM 160 Query: 122 YQEQQQPRNVQL----NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177 + + + + DI+ +PAM V + R ++S+I V++ GESG GKE+V Sbjct: 161 ASRDGKVKTARRPRGGSVGFDDIVSASPAMIRVIDLARRAAQSNIPVVLEGESGVGKEMV 220 Query: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 A A+ S RA PF+ +N AIP +L+ES LFGHEKGAFTGA+ G+F ADGGTLF Sbjct: 221 ARAIQAASDRATKPFVTVNCGAIPGNLVESILFGHEKGAFTGASEKHSGKFVDADGGTLF 280 Query: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 LDEIGD+PL+VQ +LLR + G+ VG P KV+VR+I+AT+++L V+EG+FREDL Sbjct: 281 LDEIGDLPLEVQVKLLRAVQQGEIETVGARQPQKVNVRLISATNKDLINEVREGRFREDL 340 Query: 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK-LLHPETEAALTRLAWPGN 356 ++RLNV + +P LR R+EDIP L R F++ A E ++ + + A LT WPGN Sbjct: 341 YYRLNVFPITIPALRRRKEDIPVLVRAFVERFAAEQRLDQRLTVSNGAMALLTSYDWPGN 400 Query: 357 VRQLENTCRWLTVMAAGQEVLIQDLP-----------------------GELFESTVAES 393 +RQLEN V+A G E+ ++D P E + + Sbjct: 401 IRQLENAIFRAVVLAEGHELTVRDFPQVATQIPGYIVADRTGLSWGDGGPEGRTAPDRPA 460 Query: 394 TSQMQPDSWATLLAQWADRALRSGHQNLLS----EAQPELERTLLTTALRHTQGHKQEAA 449 + T D + + +L E+E L+ AL+ +G + A Sbjct: 461 AVTADAGALETAPTDQRDERIENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQVA 520 Query: 450 RLLGWGRNTLTRKLKELGME 469 R LG GR+TL RKLK+ G++ Sbjct: 521 RKLGIGRSTLYRKLKDYGID 540 >UniRef50_Q3B305 Two component transcriptional regulator, Fis family n=9 Tax=Chlorobiaceae RepID=Q3B305_PELLD Length = 492 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 175/471 (37%), Positives = 258/471 (54%), Gaps = 12/471 (2%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + V + DDD + R + + G T +NG E +E++ ++PDV+L DI MPG DG Sbjct: 25 KNTVLIADDDETSRRIFSHFVRKMGYTALVVQNGMECIESITEQSPDVILLDINMPGKDG 84 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 ++ +K H PVII+TA D+ AV + GA++YL KP +ID ++ +++ Sbjct: 85 FEVMLHMKTEHIKTPVIIITASHDIPQAVKCIKLGAYEYLTKPLNIDRLEIVMRNSLAES 144 Query: 123 QEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Q + +N++ IIG + A++ ++ + ++VLI GESGTGKEL A Sbjct: 145 ALQIEVKNLKKELRTRDIFQHIIGRSRAIKASMEQAVQVMETDLNVLILGESGTGKELFA 204 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H+ S R PF+++N AAI L +S LFGH KG+FTGA T G FEQAD GT+FL Sbjct: 205 QAIHQGSRRNCGPFVSVNCAAISSTLADSILFGHAKGSFTGAATDHTGFFEQADKGTIFL 264 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGDM D+Q ++LR + + + RVG VD R+I+AT++N ++ +FREDL+ Sbjct: 265 DEIGDMEADIQAKVLRAIQERKIRRVGEKHERSVDFRVISATNRNFADAIRSNQFREDLY 324 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL + LPPLRER EDIP LARHFL A +E E A WPGN+R Sbjct: 325 YRLEEFPLFLPPLRERPEDIPLLARHFLDEFASANNIEKLSFTDEALAGSKEYHWPGNIR 384 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L+N + V G EV + + + A+ LA A + Sbjct: 385 ELKNAVQRAAVTRKGDEVD--------SLRPILKHGNGSTAGHPASALAGSAAQRSAGHG 436 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ++ S + E ER + A + + G+ + AR+LG GR TL RKL + G+E Sbjct: 437 PDMQSYSLEEHEREAILKAYKASNGNLTKTARMLGIGRATLYRKLDKFGLE 487 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 168/467 (35%), Positives = 253/467 (54%), Gaps = 27/467 (5%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + +VDD+ IR++L + ++GAE LE ++S D++++D++MP +DG Sbjct: 1 MARILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 LLKQI PV+ +TA + +++AV A + GA DYL KPF+ + + VER + Sbjct: 61 TGLLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLS 120 Query: 123 QEQQQPRNVQLNGP----TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + R+++ + +I E+ M D+ + ++ +S ++LI+GESGTGKEL+A Sbjct: 121 RIMAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 +H S R+ F+ LN AAI +L+ESELFG+EKGAFTGAN G+FE A GGTLFL Sbjct: 181 KYIHGQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRSIGKFEYASGGTLFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DEIGD+PLD Q +LLR L + + RVGG A + VDVRI+ ATHQ+L+ V++ +FR DL+ Sbjct: 241 DEIGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVEKNRFRRDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +R+NV + PPLRER+EDIP LA HFL+ +L + L + WPGNVR Sbjct: 301 YRINVFPLSPPPLRERKEDIPALAVHFLK---ESFNGNDVVLTDGAKRLLAQYPWPGNVR 357 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N ++ + Q L E+ + Sbjct: 358 ELANAIERAVILEENNAITAQTLSFLKKAHGPGENEGDYKLPPDGVC------------- 404 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 LE ++ AL ++ AA++LG R +K Sbjct: 405 -------LQTLETDIVRQALDMAGQNQTVAAKMLGLTRAKFRVLMKR 444 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 183/470 (38%), Positives = 261/470 (55%), Gaps = 27/470 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 + VVDD+ L R L G + F N L+ + S + DVL+SD+RMP MDG+ Sbjct: 3 SHIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGM 62 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---- 119 L+ ++K R P + VI++T ++ LD AV A ++GAF YL KPF D V +A+ Sbjct: 63 ELMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHLLS 122 Query: 120 SHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + N IIG+ +++V IIG++ + +VLI G+SG+GKELVA Sbjct: 123 ARRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVAR 182 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S R+ PF+A N A+ + LI++ELFGHEKGAFTGA + G E A GGTLFLD Sbjct: 183 AIHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFLD 242 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 EIG+MP +Q +LLRVL +G+ RVGG PV VDVRI++AT +++ V EG FR+DL+ Sbjct: 243 EIGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYF 302 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 R+NV+ + LP L ERREDIP LA H L R+ G + + + A L+ A+PGNVR+ Sbjct: 303 RINVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVRE 362 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 LEN + G+ + DLP +L + + Sbjct: 363 LENILERAVAICQGEIIRECDLPPDLVALELQAYRPPDETFM------------------ 404 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 ELER + L+ T G + A +LG R +L RK+K+ +E Sbjct: 405 -----TLAELERDYMAHLLKITGGARSRTAEILGIDRASLWRKMKKYDLE 449 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 170/461 (36%), Positives = 258/461 (55%), Gaps = 19/461 (4%) Query: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 + VV+DD S+R + L AG C + G L+ L + +++SD+RM MDG+ L Sbjct: 8 ILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMMPMDGITL 67 Query: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 LK+I+ R P LPV++MTA++++D AV A + GA D+L KPF+ +A + + Sbjct: 68 LKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAHINK-------- 119 Query: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 + + + ++ PA +++F + R++++ +VL+ GESG GKE+VA +HR S Sbjct: 120 ---YELPASDDGSGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVARFIHRQS 176 Query: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 R PF+A+N AAIP L+E+ LFG+EKGAFTGA + G+FEQA GTL LDE+ +MP Sbjct: 177 ARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLDEVTEMP 236 Query: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 + +Q +LLRVL + + RVGG PV +++RIIA +++++ + V +G FREDL++RLNV Sbjct: 237 MGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYYRLNVFP 296 Query: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 V +P LR+RR DI +ARHF+ G L P EAAL +WPGNVR+LEN + Sbjct: 297 VGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRELENVIQ 356 Query: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 +MA G + + L S A + + Sbjct: 357 RALIMATGSTIGPEVLNLAPRSSGETAVVQPAA--------APMPVEHSGLTDTDKKVDN 408 Query: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 +LER + L G +++A LG TL KL++ Sbjct: 409 MKDLEREHILRTLAEVGGSRKKAIERLGISERTLRYKLQQY 449 >UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIF3_SORC5 Length = 460 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 185/469 (39%), Positives = 272/469 (57%), Gaps = 20/469 (4%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M RG V V+DD+ +I L++AL+ G T E LA ++ D+ L D+ +P Sbjct: 1 MPRGHVLVLDDERAILTTLQKALSLEGYTVDVAGGVGVAEEKLAKRSYDIALFDVSLPDG 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ LL++I+ LPV++M+ H+ +DAAV A + GA D+L KP D + ++E + Sbjct: 61 DGVELLQRIRVSGSELPVVMMSGHATVDAAVRATRLGAIDFLEKPLSTDRLLLVLENTLR 120 Query: 121 HYQEQQQPRNVQLN-GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 + + + + ++ G ++IGE+ AM D+ I R ++++ +V + GE GTGKELVA Sbjct: 121 LVRAEAEAKALRTQTGQVGELIGESRAMLDLREQIARAAKATATVFVTGERGTGKELVAR 180 Query: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 A+H S RA+ P +N AA+P +LIESE+FGHE GAFTGA R+G+FE+A GGTLFLD Sbjct: 181 AIHGASKRARGPLEKMNCAAVPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLD 240 Query: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 E+GDMPL +Q +LLRVL + + RVGG+ +KVDVR++AAT++++E +EG+FR DL+ Sbjct: 241 EVGDMPLAMQAKLLRVLQEREIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYD 300 Query: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 RLNV+ + LPPLR RRED+P+LARHFL +A + L ++PGNVR+ Sbjct: 301 RLNVLPLSLPPLRARREDVPQLARHFLALATQANDRPGMAFTDGGMGVLVAYSFPGNVRE 360 Query: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 L N L ++ + + D+ L A +P +LA Sbjct: 361 LRNIIERLVILTPDETIDEGDVKVCLGGQQAAMKGGLFRPGVPFRVLA------------ 408 Query: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 E ER +L AL H G AR LG R+ L +K K LG+ Sbjct: 409 -------EEAERAILEEALGHHGGQMAATARGLGLERSHLYKKFKALGL 450 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 170/468 (36%), Positives = 248/468 (52%), Gaps = 29/468 (6%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGL 63 G + ++DDD+ +L L G F + ++A+ + PD++++D+RMP MDG+ Sbjct: 11 GHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVITDLRMPEMDGM 70 Query: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 +L+ +++ P LPVI++TAH + AV+A + AF YL KPF +E +LV A+ Q Sbjct: 71 EVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELESLVAAALRQRQ 130 Query: 124 EQQQPRNVQ---LNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 ++ ++ + I+ +P M + + R++ S SV + GESG+GKE VA A Sbjct: 131 ASRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQTSVFLTGESGSGKERVARA 190 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 +H SPRA+ PF+A+N AI DL ESELFGH KGAFTGA+ G ADGGTLFLDE Sbjct: 191 IHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRAADGGTLFLDE 250 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 I D+PL +Q +LLRVL +G VG +VD+R+I+ATHQ++ G FREDL++R Sbjct: 251 IADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTASGAFREDLYYR 310 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 L+VI + +P L ER EDI LA+HFL L + PE L WPGNVR+L Sbjct: 311 LHVIPLRVPSLAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLICRPWPGNVREL 370 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 EN + V + +P + Sbjct: 371 ENAVTLAAALTEKGWVAAETIPDPSRAGGRSAFP-------------------------- 404 Query: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 L +A+ ER L LR T G+ AAR+ G R L + +++ + Sbjct: 405 PLQDAKAAFERGYLENLLRATDGNISRAARIAGRHRTDLYKLMRKHEL 452 >UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=C6HUB1_9BACT Length = 473 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 174/469 (37%), Positives = 250/469 (53%), Gaps = 15/469 (3%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + +V+D+ IR L+ G TT + E L AL + PD+LL DI MPGM Sbjct: 1 MS-SSILLVEDEPLIREAFALRLSERGYQVTTATSAEEGLVALRTSPPDILLLDIVMPGM 59 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 GL LL++I+ +PVI++TA + AV A + GAFD++ K D+DE V A+ Sbjct: 60 SGLDLLREIRASDLDIPVILLTARGTVKDAVEAMRLGAFDFVAKNIDMDELFLSVSNAVR 119 Query: 121 HYQEQQQPR----NVQLNGPTTDIIGEAPAMQDVFRIIG-RLSRSSISVLINGESGTGKE 175 ++ R +I E+PA + + + ++VL+ GE+GTGKE Sbjct: 120 FLALSREARYWTSRESGRYSLDRMIAESPAGASLRDQVAGLVENDRVTVLLQGETGTGKE 179 Query: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235 VA LH + P PFI ++ AIP +L ESELFG+EKG+FTGA R G E A+GGT Sbjct: 180 YVAKVLHYNGPSGDRPFIEVDCPAIPSELFESELFGYEKGSFTGATGRRIGLVELAEGGT 239 Query: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 + LDEIGD+PL +Q +LLRV+ + RVGG AP V+VR +AATH++L V+EG+FRE Sbjct: 240 VLLDEIGDLPLPLQAKLLRVIEERTIRRVGGGAPFPVNVRFMAATHRDLRVAVKEGRFRE 299 Query: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 DLF+RLNV+ + +PPLRER DI LA FL ++A+ + L P + L ++PG Sbjct: 300 DLFYRLNVVTLAIPPLRERVGDIVPLAERFLHLSAQTFRKKILRLSPAAQKLLKGYSFPG 359 Query: 356 NVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALR 415 N+R+L N + +G ++ P +L + D L Sbjct: 360 NIRELSNLVERAVLFCSGTQLEPGHFPSDLRSPAHEPLPVAIPDDPDPRTLLLPFRMG-- 417 Query: 416 SGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 + +ER L+ L + G+K AA+ LG R L R+LK Sbjct: 418 -------EDTLDGVERRLIADILARSGGNKTRAAQALGISRWALDRRLK 459 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 171/466 (36%), Positives = 256/466 (54%), Gaps = 10/466 (2%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASK-TPDVLLSDIRMPGMDG 62 V VVDD+ + L +L+ G +NG E L + ++SD+RMP DG Sbjct: 6 SNVLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRMPEGDG 65 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 +LL+ ++Q P VI+MTA + AV A + GA D++ KPF +E + S Sbjct: 66 WSLLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEELRKKLT--ASAG 123 Query: 123 QEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182 + + I+ P + V +++ ++R+ ++LI GESGTGKEL+A +H Sbjct: 124 RRTPDAGRPVWEAVSRPILTRDPGLIGVLKMLDGVARTPATILIEGESGTGKELLARYVH 183 Query: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 SPR PF+A+N AA+P+ L+ESELFG+EKGAF+GA + G+FE A GTL LDEIG Sbjct: 184 ERSPRVHRPFVAVNCAALPESLLESELFGYEKGAFSGALARKIGKFELAHTGTLLLDEIG 243 Query: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN 302 +M L +Q +LLRV+ + + RVGG +PV VD+RI+A T++N+++ V+ G+FREDL++RL Sbjct: 244 EMDLALQAKLLRVIQEREVDRVGGASPVPVDIRIVATTNRNMKEMVKTGQFREDLYYRLR 303 Query: 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN 362 V V +P LR+R DI LA HF + E +E L E L ++PGNVR+LEN Sbjct: 304 VFPVRVPALRQRPADIVLLANHFREKFRLEH-MEVGELTAEAVECLRSASFPGNVRELEN 362 Query: 363 TCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 +A G + + L E T S++ P ++ +R G Sbjct: 363 VIIQAAFLAGGGHIGPEHLLSLGGEETNGLSSAFSTPPKEQKTGDGFSPNGVRPG----- 417 Query: 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 ++ E+ER L+ L ++ +AA++LG TL KL E GM Sbjct: 418 -QSVWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLNEYGM 462 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 167/470 (35%), Positives = 266/470 (56%), Gaps = 26/470 (5%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + + ++DDD+S +L +G G LEA A+ PDV++ DIR+P M Sbjct: 1 MCKKKILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDM 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 DG+ +L+ + + VI++TA+ D++ V A + GA++Y+ KP D+DE V RA+ Sbjct: 61 DGIEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALK 120 Query: 121 HYQEQ--QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 + + + ++ V+ +IG + M++VF++IG LS ++++VLI GE+GTGKEL+A Sbjct: 121 NSELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIA 180 Query: 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 A+H + P PFI +N +AI L+ESELFGHEKGAFTGA ++G+FE A GT+FL Sbjct: 181 RAIHDYGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFL 240 Query: 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 DE+G++P+++Q +LLR L D F RVGG + R+I AT+++L Q V+ G FREDL+ Sbjct: 241 DEMGEIPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLY 300 Query: 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVR 358 +RL+ ++++PPLR+RREDIP L H ++ ELG + + + WPGNVR Sbjct: 301 YRLSAAKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVR 360 Query: 359 QLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGH 418 +L N + G+ +L + L TV + Sbjct: 361 ELRNVLTGAAISTRGETLLDDAILPFLGAGTVQDIFPPGAAL------------------ 402 Query: 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 + E+ER + L +T G+ +A++LG R TL +K+++ + Sbjct: 403 ------SLREVEREHILKILHYTNGNITSSAQILGISRPTLRQKIRQYKI 446 >UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGD9_RHOM4 Length = 472 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 173/473 (36%), Positives = 271/473 (57%), Gaps = 26/473 (5%) Query: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKT--PDVLLSDIRMPGMD 61 + +VDD+ + + ER GL T+ N + +E L + D++++D +MP MD Sbjct: 9 PHILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMPDMD 68 Query: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 GL LL I+Q HP L VI++TAH+++ AV A Q GA DY+PKPF +E V V+ A++ Sbjct: 69 GLELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEELVERVQAALAR 128 Query: 122 YQEQQQPRN-------VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174 +EQQ+ R + PT + +GE P ++ + ++ R++ + V I GESGTGK Sbjct: 129 RREQQEARAKQPARTSQRRARPTIEYVGEHPMIRRLKEMLPRVAANKAPVFIQGESGTGK 188 Query: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 E++A +H+ S RA+ PF+A+N A +P++L+ES LFGH KGAFTGA G FE+A+GG Sbjct: 189 EILARLIHQMSDRAEGPFVAINCANLPRELVESHLFGHRKGAFTGAIEDMTGAFERAEGG 248 Query: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294 TL LDEI ++ L +Q +LLRVL + + +VG P K+DVR+IA +++NL + + +G+FR Sbjct: 249 TLLLDEITEVDLAIQAKLLRVLQEQEIQKVGSTEPRKIDVRVIATSNRNLSEAIAKGEFR 308 Query: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 EDL+HRL+V + +PPLRER D+P L HF++ G+ K + + WP Sbjct: 309 EDLYHRLSVFPLSVPPLRERMSDVPLLVAHFIKKYCELYGLPPKKVSDALMERFMQYPWP 368 Query: 355 GNVRQLENTCRWLTVM-AAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRA 413 GNVRQLEN + ++ A + + ++D+ D +A + + Sbjct: 369 GNVRQLENYVQRGVLLSAEREVIEVEDV----------------FNDFFADAEPARQNAS 412 Query: 414 LRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466 + ++ER ++ AL+ T ++Q AA+ LG T+ KLK Sbjct: 413 AEKEELLGRVQTIEDMEREMILRALKETNNNQQLAAQKLGISARTIRNKLKRY 465 >UniRef50_D2QH48 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=D2QH48_9SPHI Length = 490 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 160/488 (32%), Positives = 256/488 (52%), Gaps = 22/488 (4%) Query: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDG 62 + ++DD++ I +LER L G + + G + L L ++ ++++ D ++P +DG Sbjct: 1 MEKILIIDDNNDICLLLERFLTKQGYKTASVQRGDDGLVLLRKESFELVICDFKLPDIDG 60 Query: 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 L +L++IK HP VII+T +SD+ AV + GA+DY+ KP DE + ++ A+ Sbjct: 61 LEMLRRIKVMHPTTAVIIITGYSDVRVAVQTVKHGAYDYVTKPLYPDEILYTIKGALERR 120 Query: 123 Q--------------EQQQPRNVQLNGPTTD--------IIGEAPAMQDVFRIIGRLSRS 160 + V+ + I G++ A + + + I ++ + Sbjct: 121 GQSLSQAKAVTPAAAPAVKSSTVKAASGKSSLTPDGKRFIFGKSRAAEQLQKHIDLIAPT 180 Query: 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGA 220 +SV+I GE+GTGKE VA+A+H S RA PF+A++ A+ K+L SELFGH KG+FTGA Sbjct: 181 DMSVIITGETGTGKEFVANAIHLKSKRADKPFVAIDCGALGKELAGSELFGHVKGSFTGA 240 Query: 221 NTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAAT 280 + + G FE A+GGT+FLDEIG++ D Q +LLRVL + + R+G + VDVRII AT Sbjct: 241 MSDKAGSFEYANGGTIFLDEIGNLSYDNQIKLLRVLQERKIRRIGSNQDIPVDVRIIVAT 300 Query: 281 HQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLL 340 +++L + V++GKFRED++HR+ +HL PLRER+ D+ A HFL+ A ++L + Sbjct: 301 NEDLREAVRQGKFREDIYHRIAEFEMHLSPLRERKADVMIFAEHFLESANQQLEKDILGF 360 Query: 341 HPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD 400 E + L W GN+R+L+N + ++ G + LP E+ + Sbjct: 361 EEEAKEKLKEYYWHGNLRELQNVVKRAVLLTQGDYIEADVLPQEIISPQYLTAEDTGTSS 420 Query: 401 SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLT 460 + S L ER + L T +K +AA +L R TL Sbjct: 421 IQINYDPARPGVPVFSQSAANLKSVSENAERAAILKVLEKTGYNKTKAAEVLNIDRKTLY 480 Query: 461 RKLKELGM 468 KLK + Sbjct: 481 NKLKAYDI 488 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.200 0.771 Lambda K H 0.267 0.0614 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,460,807,276 Number of Sequences: 3077464 Number of extensions: 315917864 Number of successful extensions: 913002 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 43089 Number of HSP's successfully gapped in prelim test: 14235 Number of HSP's that attempted gapping in prelim test: 781951 Number of HSP's gapped (non-prelim): 72763 length of query: 469 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 337 effective length of database: 634,171,108 effective search space: 213715663396 effective search space used: 213715663396 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 96 (41.0 bits)