BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (134 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P69412 Protein rcsF n=122 Tax=Enterobacteriaceae RepID=... 272 3e-72 UniRef50_D0ZBZ6 Outer membrane lipoprotein n=27 Tax=Enterobacter... 149 3e-35 UniRef50_B4F247 Regulator of colanic acid capsule synthesis n=5 ... 124 7e-28 UniRef50_Q7N8M5 Exopolysaccharide synthesis regulatory protein R... 100 2e-20 UniRef50_UPI000190BBC3 outer membrane lipoprotein n=1 Tax=Salmon... 96 3e-19 UniRef50_B2PWB4 Putative uncharacterized protein n=2 Tax=Provide... 94 1e-18 UniRef50_D1P1A5 Putative uncharacterized protein n=1 Tax=Provide... 91 1e-17 UniRef50_B6XDL2 Putative uncharacterized protein n=1 Tax=Provide... 80 2e-14 UniRef50_A4SQ79 Lipoprotein, putative n=2 Tax=Aeromonas RepID=A4... 54 1e-06 UniRef50_A1SZQ8 Lipoprotein, putative n=1 Tax=Psychromonas ingra... 50 2e-05 UniRef50_Q1ZEM2 Lipoprotein, putative n=1 Tax=Psychromonas sp. C... 50 3e-05 UniRef50_Q480H4 Putative rcsF protein n=1 Tax=Colwellia psychrer... 48 1e-04 UniRef50_A3WM44 Putative uncharacterized protein n=1 Tax=Idiomar... 44 0.002 UniRef50_C4LBY0 Exopolysaccharide synthesis regulator RcsF n=1 T... 44 0.002 UniRef50_Q12L56 Lipoprotein, putative n=1 Tax=Shewanella denitri... 43 0.003 UniRef50_A3QG56 Lipoprotein, putative n=20 Tax=Shewanella RepID=... 39 0.044 >UniRef50_P69412 Protein rcsF n=122 Tax=Enterobacteriaceae RepID=RCSF_ECOL6 Length = 134 Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 134/134 (100%), Positives = 134/134 (100%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG Sbjct: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR Sbjct: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 Query: 121 QAVCIGSALNITAK 134 QAVCIGSALNITAK Sbjct: 121 QAVCIGSALNITAK 134 >UniRef50_D0ZBZ6 Outer membrane lipoprotein n=27 Tax=Enterobacteriaceae RepID=D0ZBZ6_EDWTE Length = 140 Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/136 (58%), Positives = 99/136 (72%), Gaps = 6/136 (4%) Query: 1 MRALPICLV--ALMLSGCSMLSRSPVEPVQSTAPQPKAEP-AKPKA--PRATPVRIYTNA 55 MRALP+CL+ +L LSGCS+LSR P P++ A E AKP+A PR TP+ +Y +A Sbjct: 1 MRALPLCLLTASLALSGCSLLSR-PAAPIKPLAADRTPETVAKPRAVTPRQTPITLYESA 59 Query: 56 EELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGT 115 E+L+GKPFRDLGEVSG CQ S PS+ TARKRM A+++KANAVLLHSC++ S + Sbjct: 60 EDLIGKPFRDLGEVSGSVCQTRPHHSAPSLTTARKRMLYKAAQLKANAVLLHSCQILSQS 119 Query: 116 PGCYRQAVCIGSALNI 131 GCYRQA C GSAL+I Sbjct: 120 HGCYRQATCTGSALSI 135 >UniRef50_B4F247 Regulator of colanic acid capsule synthesis n=5 Tax=Enterobacteriaceae RepID=B4F247_PROMH Length = 136 Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 64/134 (47%), Positives = 88/134 (65%), Gaps = 3/134 (2%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPK--AEPAKPKAPRATPVRIYTNAEEL 58 MR L I ++AL ++GCSM S V+ + T + +P KPK +PVRI E+L Sbjct: 3 MRLLLIGIIALFMTGCSMQKSSDVDQSKFTDMRLNKPGQPQKPKQQTLSPVRIVEKTEDL 62 Query: 59 VGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGC 118 +G PF+DLG V+G+SC+ + QD P S+P A+KRM I A+ ANAVLLH C++ +G GC Sbjct: 63 LGAPFKDLGVVAGESCRQTLQDPPASLPAAKKRMAIKAAYKNANAVLLHECQIVTGM-GC 121 Query: 119 YRQAVCIGSALNIT 132 Y+ A+C GSAL IT Sbjct: 122 YQSAICEGSALLIT 135 >UniRef50_Q7N8M5 Exopolysaccharide synthesis regulatory protein RcsF n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N8M5_PHOLL Length = 132 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%) Query: 13 LSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGD 72 ++GCS+ + + Q + + K ++ V++YT +EEL+G F+DLG VSG Sbjct: 13 ITGCSVQQATFPDASQLSDMKYTKLSTGEKKHFSSSVKLYTKSEELLGVSFKDLGIVSGQ 72 Query: 73 SCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT 132 SC++S QD P +I AR +M A+ + ANAVLLH CE+ SG GCY+ A+C GSAL IT Sbjct: 73 SCRSSLQDPPANIIVARNQMMTKAAYLNANAVLLHQCEILSG-QGCYQIAICEGSALLIT 131 >UniRef50_UPI000190BBC3 outer membrane lipoprotein n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190BBC3 Length = 54 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 46/53 (86%), Positives = 49/53 (92%) Query: 27 VQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQ 79 VQSTA PKAEP KPKAPRA PVRIYTNAE+LVGKPFRDLGEVSG+SCQA+NQ Sbjct: 1 VQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQ 53 >UniRef50_B2PWB4 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2PWB4_PROST Length = 134 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 11/137 (8%) Query: 1 MRALPICLVALMLSGCSM---LSRSPVEPVQS---TAPQPKAEPAKPKAPRATPVRIYTN 54 MR L + L +L+GC M + + P + S + P PK + P T V++ + Sbjct: 1 MRLLLLTLATFVLAGCGMNQYIHQGPNKGFTSMKLSKPVPKTD----TKPSTTNVKLMNS 56 Query: 55 AEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSG 114 EEL+G PF+DLG VSG SC+ S Q P ++ TA+K M A+ + A+AV+LH C+ T Sbjct: 57 PEELLGMPFKDLGVVSGQSCRESLQSPPANLNTAKKSMLTKAAYIAADAVVLHQCQ-TMA 115 Query: 115 TPGCYRQAVCIGSALNI 131 +PGCY+ +C GSA+ I Sbjct: 116 SPGCYQATICEGSAIKI 132 >UniRef50_D1P1A5 Putative uncharacterized protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P1A5_9ENTR Length = 156 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 9/137 (6%) Query: 1 MRALPICLVALMLSGCSMLSRSP------VEPVQSTAPQPKAEPAKPKAPRATPVRIYTN 54 MR + L A ML+GC + + ++ + P PKA K + A +++ + Sbjct: 21 MRLFLLTLAAFMLAGCGINQYTSPSMNKGFSSMKISKPVPKA--TKEEDVSAEKIKLMNS 78 Query: 55 AEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSG 114 EEL+G PF+DLG VSG+ C+ + + P ++ +A+ M A+ + A+AVLLH C+ TS Sbjct: 79 PEELLGMPFKDLGVVSGEDCRKNAKSPPANLDSAKNSMLTQAAYIAADAVLLHQCQ-TST 137 Query: 115 TPGCYRQAVCIGSALNI 131 PGCY+ VC GSAL I Sbjct: 138 APGCYQATVCEGSALKI 154 >UniRef50_B6XDL2 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XDL2_9ENTR Length = 135 Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 1/87 (1%) Query: 46 ATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVL 105 A +++ + EEL+G PFRDLG VSG+SC+ + + P ++ +A+ M A+ + A+AVL Sbjct: 49 AENIKLMNSPEELLGMPFRDLGIVSGESCRKNAKSPPINLDSAKNSMLTQAAYIAADAVL 108 Query: 106 LHSCEVTSGTPGCYRQAVCIGSALNIT 132 LH C+ T PGCY+ VC GSAL I Sbjct: 109 LHQCQ-TKSAPGCYQATVCEGSALKIV 134 >UniRef50_A4SQ79 Lipoprotein, putative n=2 Tax=Aeromonas RepID=A4SQ79_AERS4 Length = 123 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 11/126 (8%) Query: 6 ICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRD 65 I ++ L+ SGC+ S + ++ + E KP V+IY +L + Sbjct: 5 ILMMPLIASGCADFSFN-----RNLDKENFDEYFKPGG-----VQIYEQ-NQLADLNYLY 53 Query: 66 LGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCI 125 LG V G+SCQ+ + P+ AR + + M N V C S TPGC +Q +C Sbjct: 54 LGTVEGESCQSDAKQPVPNAGEARTLARRRVADMGGNGVTFDKCAEFSDTPGCLKQVICY 113 Query: 126 GSALNI 131 G AL + Sbjct: 114 GQALKV 119 >UniRef50_A1SZQ8 Lipoprotein, putative n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SZQ8_PSYIN Length = 144 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 +R + I L+ + CS L S + + + KP + V +Y + L G Sbjct: 19 LRFIIISFTVLLTTACSNLDFSS-----NLDKKNFDDYFKP-----SRVTVYEKPQ-LQG 67 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 ++ + V G SCQ D P I AR +I A++M AN ++ +C + C Sbjct: 68 LDYQFIAAVDGSSCQQEEIDRPADIKEARTNARIKAAEMNANGIVFQNCLIFEQDASCIS 127 Query: 121 QAVCIGSALNI 131 +C A+++ Sbjct: 128 NIICYARAISV 138 >UniRef50_Q1ZEM2 Lipoprotein, putative n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEM2_9GAMM Length = 124 Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 47 TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLL 106 + V IY+ EE + LG ++G SCQ D P S AR + +INA+ + AN ++ Sbjct: 37 SSVTIYSK-EEATKLDAQWLGAITGSSCQIEINDRPASKADARTKARINAANLDANGIVF 95 Query: 107 HSCEVTSGTPGCYRQAVCIGSALNI 131 +C C +C A+++ Sbjct: 96 QTCVTFEADSSCLSNVICYARAISV 120 >UniRef50_Q480H4 Putative rcsF protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480H4_COLP3 Length = 140 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 11/129 (8%) Query: 3 ALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKP 62 AL + L+ ML GC+ +S AE + A+ V+I+ N E+ Sbjct: 14 ALTVVLLTTMLGGCT-----GNYTFESNVKADNAE----EYFSASKVKIF-NDEQDFNVN 63 Query: 63 FRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQA 122 ++ +G V G+ CQ + P AR + + A KANA++ SC + T C Q Sbjct: 64 YQYVGLVEGEDCQKEPHLAAPDAINARTQARQAAYLKKANAIIFTSC-IDIETKHCVAQV 122 Query: 123 VCIGSALNI 131 VC G A + Sbjct: 123 VCYGKAYRL 131 >UniRef50_A3WM44 Putative uncharacterized protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WM44_9GAMM Length = 111 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 29 STAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTA 88 ST Q ++ + +A P + + ++L + L V+GDSCQA+ + +P S A Sbjct: 5 STGNQYGSQESALRALNVVPNEVELHDQQLNPNRHKILSVVTGDSCQATFRGAPASTLDA 64 Query: 89 RKRMQINASKMKANAVLLHSCEV--TSGTPGCYRQAVCIGSA 128 ++ ++ +A++ A V C T + CY Q C+G A Sbjct: 65 QQALRNDAARFNATDVFAVQCFNIPTDSSARCYTQVSCVGKA 106 >UniRef50_C4LBY0 Exopolysaccharide synthesis regulator RcsF n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBY0_TOLAT Length = 125 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 12/132 (9%) Query: 1 MRALPI-CLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELV 59 M+ LP L+ MLSGCS+ Q K + P + V + +L+ Sbjct: 1 MKTLPFTALMLTMLSGCSLF--------QVNTNLDKENFTEYFKPSSVAVM---DKAQLL 49 Query: 60 GKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCY 119 +G V G+SCQ+ P+I A+ + A+ M NAV+ C V + C Sbjct: 50 DADATPVGTVEGESCQSDTTQPVPNITDAQTDARRKAADMGGNAVVFGKCAVVPPSSECI 109 Query: 120 RQAVCIGSALNI 131 VC G + Sbjct: 110 SSLVCYGQVYQV 121 >UniRef50_Q12L56 Lipoprotein, putative n=1 Tax=Shewanella denitrificans OS217 RepID=Q12L56_SHEDO Length = 130 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 62 PFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSG-TPGCYR 120 PF+ L VSG++CQ D+P SI AR + A+ + AN +++ SC++ C Sbjct: 57 PFKRLKLVSGETCQIKENDAPASIADARTLARRAAADLGANGIIIQSCQLIEVPEQDCVS 116 Query: 121 QAVCIGSALNITAK 134 +A+C+ A+ I + Sbjct: 117 RALCVAQAIKINQQ 130 >UniRef50_A3QG56 Lipoprotein, putative n=20 Tax=Shewanella RepID=A3QG56_SHELP Length = 138 Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 62 PFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSG-TPGCYR 120 P++ G V G+SCQ QD P S+ AR + A+ AN +++ C + + C Sbjct: 63 PYKLKGMVEGESCQERAQDVPASVSEARTMARRAAADKGANGLIIKRCALIEEPSKACVS 122 Query: 121 QAVCIGSAL 129 QA+C+G A+ Sbjct: 123 QALCVGQAI 131 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P69412 Protein rcsF n=122 Tax=Enterobacteriaceae RepID=... 173 2e-42 UniRef50_B4F247 Regulator of colanic acid capsule synthesis n=5 ... 153 2e-36 UniRef50_D1P1A5 Putative uncharacterized protein n=1 Tax=Provide... 140 1e-32 UniRef50_B2PWB4 Putative uncharacterized protein n=2 Tax=Provide... 139 3e-32 UniRef50_Q7N8M5 Exopolysaccharide synthesis regulatory protein R... 138 5e-32 UniRef50_A1SZQ8 Lipoprotein, putative n=1 Tax=Psychromonas ingra... 137 9e-32 UniRef50_A4SQ79 Lipoprotein, putative n=2 Tax=Aeromonas RepID=A4... 132 3e-30 UniRef50_D0ZBZ6 Outer membrane lipoprotein n=27 Tax=Enterobacter... 131 5e-30 UniRef50_B6XDL2 Putative uncharacterized protein n=1 Tax=Provide... 120 1e-26 UniRef50_Q480H4 Putative rcsF protein n=1 Tax=Colwellia psychrer... 117 1e-25 UniRef50_Q1ZEM2 Lipoprotein, putative n=1 Tax=Psychromonas sp. C... 105 5e-22 UniRef50_A3WM44 Putative uncharacterized protein n=1 Tax=Idiomar... 100 3e-20 UniRef50_UPI000190BBC3 outer membrane lipoprotein n=1 Tax=Salmon... 67 2e-10 Sequences not found previously or not previously below threshold: UniRef50_C4LBY0 Exopolysaccharide synthesis regulator RcsF n=1 T... 95 5e-19 UniRef50_Q12L56 Lipoprotein, putative n=1 Tax=Shewanella denitri... 64 9e-10 UniRef50_Q5QW34 Uncharacterized conserved protein n=1 Tax=Idioma... 63 2e-09 UniRef50_A3QG56 Lipoprotein, putative n=20 Tax=Shewanella RepID=... 59 3e-08 UniRef50_A6FCG2 Lipoprotein, putative n=1 Tax=Moritella sp. PE36... 59 4e-08 UniRef50_A8H004 Putative uncharacterized protein n=1 Tax=Shewane... 52 6e-06 UniRef50_Q3IHK3 Putative uncharacterized protein n=2 Tax=Alterom... 44 0.001 UniRef50_A8G0L9 Putative uncharacterized protein n=2 Tax=Shewane... 44 0.001 UniRef50_A0KSK9 Putative uncharacterized protein n=2 Tax=Shewane... 44 0.001 UniRef50_B1KDC0 Putative uncharacterized protein n=1 Tax=Shewane... 42 0.006 UniRef50_A3XFQ4 50S ribosomal protein L20 n=1 Tax=Roseobacter sp... 41 0.012 UniRef50_Q07X97 Putative uncharacterized protein n=1 Tax=Shewane... 40 0.019 UniRef50_A9DE69 Putative uncharacterized protein n=1 Tax=Shewane... 40 0.022 >UniRef50_P69412 Protein rcsF n=122 Tax=Enterobacteriaceae RepID=RCSF_ECOL6 Length = 134 Score = 173 bits (437), Expect = 2e-42, Method: Composition-based stats. Identities = 134/134 (100%), Positives = 134/134 (100%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG Sbjct: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR Sbjct: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 Query: 121 QAVCIGSALNITAK 134 QAVCIGSALNITAK Sbjct: 121 QAVCIGSALNITAK 134 >UniRef50_B4F247 Regulator of colanic acid capsule synthesis n=5 Tax=Enterobacteriaceae RepID=B4F247_PROMH Length = 136 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 64/134 (47%), Positives = 88/134 (65%), Gaps = 3/134 (2%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPK--AEPAKPKAPRATPVRIYTNAEEL 58 MR L I ++AL ++GCSM S V+ + T + +P KPK +PVRI E+L Sbjct: 3 MRLLLIGIIALFMTGCSMQKSSDVDQSKFTDMRLNKPGQPQKPKQQTLSPVRIVEKTEDL 62 Query: 59 VGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGC 118 +G PF+DLG V+G+SC+ + QD P S+P A+KRM I A+ ANAVLLH C++ +G GC Sbjct: 63 LGAPFKDLGVVAGESCRQTLQDPPASLPAAKKRMAIKAAYKNANAVLLHECQIVTGM-GC 121 Query: 119 YRQAVCIGSALNIT 132 Y+ A+C GSAL IT Sbjct: 122 YQSAICEGSALLIT 135 >UniRef50_D1P1A5 Putative uncharacterized protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P1A5_9ENTR Length = 156 Score = 140 bits (352), Expect = 1e-32, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 9/138 (6%) Query: 1 MRALPICLVALMLSGCSMLSRSPVE------PVQSTAPQPKAEPAKPKAPRATPVRIYTN 54 MR + L A ML+GC + + ++ + P PKA K + A +++ + Sbjct: 21 MRLFLLTLAAFMLAGCGINQYTSPSMNKGFSSMKISKPVPKA--TKEEDVSAEKIKLMNS 78 Query: 55 AEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSG 114 EEL+G PF+DLG VSG+ C+ + + P ++ +A+ M A+ + A+AVLLH C+ TS Sbjct: 79 PEELLGMPFKDLGVVSGEDCRKNAKSPPANLDSAKNSMLTQAAYIAADAVLLHQCQ-TST 137 Query: 115 TPGCYRQAVCIGSALNIT 132 PGCY+ VC GSAL I Sbjct: 138 APGCYQATVCEGSALKIV 155 >UniRef50_B2PWB4 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2PWB4_PROST Length = 134 Score = 139 bits (349), Expect = 3e-32, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 5/135 (3%) Query: 1 MRALPICLVALMLSGCSMLSR---SPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEE 57 MR L + L +L+GC M P + S K P P T V++ + EE Sbjct: 1 MRLLLLTLATFVLAGCGMNQYIHQGPNKGFTSM-KLSKPVPKTDTKPSTTNVKLMNSPEE 59 Query: 58 LVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPG 117 L+G PF+DLG VSG SC+ S Q P ++ TA+K M A+ + A+AV+LH C+ T +PG Sbjct: 60 LLGMPFKDLGVVSGQSCRESLQSPPANLNTAKKSMLTKAAYIAADAVVLHQCQ-TMASPG 118 Query: 118 CYRQAVCIGSALNIT 132 CY+ +C GSA+ I Sbjct: 119 CYQATICEGSAIKIV 133 >UniRef50_Q7N8M5 Exopolysaccharide synthesis regulatory protein RcsF n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N8M5_PHOLL Length = 132 Score = 138 bits (348), Expect = 5e-32, Method: Composition-based stats. Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%) Query: 13 LSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGD 72 ++GCS+ + + Q + + K ++ V++YT +EEL+G F+DLG VSG Sbjct: 13 ITGCSVQQATFPDASQLSDMKYTKLSTGEKKHFSSSVKLYTKSEELLGVSFKDLGIVSGQ 72 Query: 73 SCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT 132 SC++S QD P +I AR +M A+ + ANAVLLH CE+ SG GCY+ A+C GSAL IT Sbjct: 73 SCRSSLQDPPANIIVARNQMMTKAAYLNANAVLLHQCEILSG-QGCYQIAICEGSALLIT 131 >UniRef50_A1SZQ8 Lipoprotein, putative n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SZQ8_PSYIN Length = 144 Score = 137 bits (345), Expect = 9e-32, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 +R + I L+ + CS L S + + + KP + V +Y +L G Sbjct: 19 LRFIIISFTVLLTTACSNLDFSS-----NLDKKNFDDYFKP-----SRVTVYEKP-QLQG 67 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 ++ + V G SCQ D P I AR +I A++M AN ++ +C + C Sbjct: 68 LDYQFIAAVDGSSCQQEEIDRPADIKEARTNARIKAAEMNANGIVFQNCLIFEQDASCIS 127 Query: 121 QAVCIGSALNI 131 +C A+++ Sbjct: 128 NIICYARAISV 138 >UniRef50_A4SQ79 Lipoprotein, putative n=2 Tax=Aeromonas RepID=A4SQ79_AERS4 Length = 123 Score = 132 bits (332), Expect = 3e-30, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%) Query: 5 PICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFR 64 I ++ L+ SGC+ S + ++ + E KP V+IY +L + Sbjct: 4 LILMMPLIASGCADFSFN-----RNLDKENFDEYFKPGG-----VQIYEQ-NQLADLNYL 52 Query: 65 DLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVC 124 LG V G+SCQ+ + P+ AR + + M N V C S TPGC +Q +C Sbjct: 53 YLGTVEGESCQSDAKQPVPNAGEARTLARRRVADMGGNGVTFDKCAEFSDTPGCLKQVIC 112 Query: 125 IGSALNI 131 G AL + Sbjct: 113 YGQALKV 119 >UniRef50_D0ZBZ6 Outer membrane lipoprotein n=27 Tax=Enterobacteriaceae RepID=D0ZBZ6_EDWTE Length = 140 Score = 131 bits (330), Expect = 5e-30, Method: Composition-based stats. Identities = 79/136 (58%), Positives = 98/136 (72%), Gaps = 6/136 (4%) Query: 1 MRALPICLVA--LMLSGCSMLSRSPVEPVQSTAPQPKAEP-AKPKA--PRATPVRIYTNA 55 MRALP+CL+ L LSGCS+LSR P P++ A E AKP+A PR TP+ +Y +A Sbjct: 1 MRALPLCLLTASLALSGCSLLSR-PAAPIKPLAADRTPETVAKPRAVTPRQTPITLYESA 59 Query: 56 EELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGT 115 E+L+GKPFRDLGEVSG CQ S PS+ TARKRM A+++KANAVLLHSC++ S + Sbjct: 60 EDLIGKPFRDLGEVSGSVCQTRPHHSAPSLTTARKRMLYKAAQLKANAVLLHSCQILSQS 119 Query: 116 PGCYRQAVCIGSALNI 131 GCYRQA C GSAL+I Sbjct: 120 HGCYRQATCTGSALSI 135 >UniRef50_B6XDL2 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XDL2_9ENTR Length = 135 Score = 120 bits (300), Expect = 1e-26, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQ--STAPQPKAEP-AKPKAPRATPVRIYTNAEE 57 MR + L L+GC + + + S+ K P + A +++ + EE Sbjct: 1 MRLFLLALATFALAGCGINQYTSPSMNKGFSSMKLSKPLPVETEEDVSAENIKLMNSPEE 60 Query: 58 LVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPG 117 L+G PFRDLG VSG+SC+ + + P ++ +A+ M A+ + A+AVLLH C+ T PG Sbjct: 61 LLGMPFRDLGIVSGESCRKNAKSPPINLDSAKNSMLTQAAYIAADAVLLHQCQ-TKSAPG 119 Query: 118 CYRQAVCIGSALNIT 132 CY+ VC GSAL I Sbjct: 120 CYQATVCEGSALKIV 134 >UniRef50_Q480H4 Putative rcsF protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480H4_COLP3 Length = 140 Score = 117 bits (292), Expect = 1e-25, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 11/129 (8%) Query: 3 ALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKP 62 AL + L+ ML GC + +S AE + A+ V+I+ N E+ Sbjct: 14 ALTVVLLTTMLGGC-----TGNYTFESNVKADNAE----EYFSASKVKIF-NDEQDFNVN 63 Query: 63 FRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQA 122 ++ +G V G+ CQ + P AR + + A KANA++ SC + T C Q Sbjct: 64 YQYVGLVEGEDCQKEPHLAAPDAINARTQARQAAYLKKANAIIFTSC-IDIETKHCVAQV 122 Query: 123 VCIGSALNI 131 VC G A + Sbjct: 123 VCYGKAYRL 131 >UniRef50_Q1ZEM2 Lipoprotein, putative n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEM2_9GAMM Length = 124 Score = 105 bits (261), Expect = 5e-22, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 11/118 (9%) Query: 14 SGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDS 73 CS S + Q + KP + V IY+ EE + LG ++G S Sbjct: 14 GACSQYPFSS-----NVDKQNFSTYFKP-----SSVTIYSK-EEATKLDAQWLGAITGSS 62 Query: 74 CQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNI 131 CQ D P S AR + +INA+ + AN ++ +C C +C A+++ Sbjct: 63 CQIEINDRPASKADARTKARINAANLDANGIVFQTCVTFEADSSCLSNVICYARAISV 120 >UniRef50_A3WM44 Putative uncharacterized protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WM44_9GAMM Length = 111 Score = 99.5 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 29 STAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTA 88 ST Q ++ + +A P + + ++L + L V+GDSCQA+ + +P S A Sbjct: 5 STGNQYGSQESALRALNVVPNEVELHDQQLNPNRHKILSVVTGDSCQATFRGAPASTLDA 64 Query: 89 RKRMQINASKMKANAVLLHSCEV--TSGTPGCYRQAVCIGSA 128 ++ ++ +A++ A V C T + CY Q C+G A Sbjct: 65 QQALRNDAARFNATDVFAVQCFNIPTDSSARCYTQVSCVGKA 106 >UniRef50_C4LBY0 Exopolysaccharide synthesis regulator RcsF n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBY0_TOLAT Length = 125 Score = 95.3 bits (235), Expect = 5e-19, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 12/132 (9%) Query: 1 MRALPIC-LVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELV 59 M+ LP L+ MLSGCS+ + + + E KP + V + A +L+ Sbjct: 1 MKTLPFTALMLTMLSGCSLFQVN-----TNLDKENFTEYFKP-----SSVAVMDKA-QLL 49 Query: 60 GKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCY 119 +G V G+SCQ+ P+I A+ + A+ M NAV+ C V + C Sbjct: 50 DADATPVGTVEGESCQSDTTQPVPNITDAQTDARRKAADMGGNAVVFGKCAVVPPSSECI 109 Query: 120 RQAVCIGSALNI 131 VC G + Sbjct: 110 SSLVCYGQVYQV 121 >UniRef50_UPI000190BBC3 outer membrane lipoprotein n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190BBC3 Length = 54 Score = 66.8 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 46/54 (85%), Positives = 49/54 (90%) Query: 27 VQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQD 80 VQSTA PKAEP KPKAPRA PVRIYTNAE+LVGKPFRDLGEVSG+SCQA+NQ Sbjct: 1 VQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQS 54 >UniRef50_Q12L56 Lipoprotein, putative n=1 Tax=Shewanella denitrificans OS217 RepID=Q12L56_SHEDO Length = 130 Score = 64.5 bits (155), Expect = 9e-10, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 11/132 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 +R L V L+++ C+ + P+ + KP + V ++ A Sbjct: 6 LRNLSCGAVTLLITACA----GDYGFKSNLDPKAINDYFKP-----SEVTVFD-ANSSPS 55 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTS-GTPGCY 119 PF+ L VSG++CQ D+P SI AR + A+ + AN +++ SC++ C Sbjct: 56 APFKRLKLVSGETCQIKENDAPASIADARTLARRAAADLGANGIIIQSCQLIEVPEQDCV 115 Query: 120 RQAVCIGSALNI 131 +A+C+ A+ I Sbjct: 116 SRALCVAQAIKI 127 >UniRef50_Q5QW34 Uncharacterized conserved protein n=1 Tax=Idiomarina loihiensis RepID=Q5QW34_IDILO Length = 98 Score = 63.3 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Query: 49 VRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHS 108 V +Y + + + + V+G+SCQ + + S A + ++ +A + KA+A++ Sbjct: 13 VEVYRGDNK-PSRAYELISIVNGESCQRKFRGAEASANDAVEALREDAVRFKAHAIIGAQ 71 Query: 109 CEVT--SGTPGCYRQAVCIGSALN 130 C CY + C+G A+ Sbjct: 72 CFSFKPEADSICYSEVSCVGRAIQ 95 >UniRef50_A3QG56 Lipoprotein, putative n=20 Tax=Shewanella RepID=A3QG56_SHELP Length = 138 Score = 59.5 bits (142), Expect = 3e-08, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%) Query: 29 STAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTA 88 + Q + K A V+++ + P++ G V G+SCQ QD P S+ A Sbjct: 37 NLDGQAIDDYFK-----AGEVQLFQETQP--KGPYKLKGMVEGESCQERAQDVPASVSEA 89 Query: 89 RKRMQINASKMKANAVLLHSCEVTSG-TPGCYRQAVCIGSALNI 131 R + A+ AN +++ C + + C QA+C+G A+ + Sbjct: 90 RTMARRAAADKGANGLIIKRCALIEEPSKACVSQALCVGQAILL 133 >UniRef50_A6FCG2 Lipoprotein, putative n=1 Tax=Moritella sp. PE36 RepID=A6FCG2_9GAMM Length = 129 Score = 59.1 bits (141), Expect = 4e-08, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 11/119 (9%) Query: 14 SGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDS 73 SGCS + E + V YT A L LG V G+S Sbjct: 12 SGCSNYPLQ-----TNLDKNNFTEYF-----SISGVEYYT-ASALQNYQVEQLGLVEGES 60 Query: 74 CQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT 132 CQ+++ P A+ + A+ + AN +++ SC + C VC G A+ +T Sbjct: 61 CQSADNLPPAEQQQAKIAAKRKAAALNANGIIIRSCIAPPASKSCLSSYVCYGDAIKVT 119 >UniRef50_A8H004 Putative uncharacterized protein n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H004_SHEPA Length = 126 Score = 51.8 bits (122), Expect = 6e-06, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 12/131 (9%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 ++ + + + ++ C + + + + T + +AEE+ Sbjct: 5 LKFIVLTAALMGMTACQGVRFNTNLTPEFVVDKY-----------QTSQIVEYSAEEVYN 53 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 + +G+VS CQ + PP + + ++ KM N +++ C + C Sbjct: 54 HDSQMIGDVSAAYCQ-TLNTPPPIYSSIIETLKYKVHKMGGNGIVVMECLKDNPYASCIA 112 Query: 121 QAVCIGSALNI 131 C A + Sbjct: 113 HLECRALAYEV 123 >UniRef50_Q3IHK3 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IHK3_PSEHT Length = 130 Score = 44.5 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 12/134 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 +R + I LSGCS ++ ++ ++ + + +E Sbjct: 2 LRFMAIITALATLSGCSNMTFH-----TDIDNDVLSQEIG-TYVNKRDLQQFYSDQEAHE 55 Query: 61 KPFRDLGEVSGDSCQ-----ASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGT 115 LG ++G+SC +N S A ++ +A + ANA ++SC TS + Sbjct: 56 SGATLLGRIAGESCDGDGMGNNNVSYNRSKSNAIDLLKADAMRRGANAFTINSCSETSVS 115 Query: 116 PGCYRQAVCIGSAL 129 C +C G A Sbjct: 116 Y-CDLSVLCTGQAY 128 >UniRef50_A8G0L9 Putative uncharacterized protein n=2 Tax=Shewanella RepID=A8G0L9_SHESH Length = 125 Score = 44.5 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 14/131 (10%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 M+ L + L LS C + P+ ++ R V+ Y+ AE + Sbjct: 4 MKLLMTVFLLLSLSAC-------------NGIRLNTIPSVDESLRTYKVQEYSIAE-IQR 49 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 LG+V C+ P+ ++ ++ N V++ C C Sbjct: 50 YKAESLGKVVSSYCRTRPTQPKPTESFLLGELKYKTQRLGGNGVVIMECVDHRLNNSCND 109 Query: 121 QAVCIGSALNI 131 C A + Sbjct: 110 YLECRALAYRV 120 >UniRef50_A0KSK9 Putative uncharacterized protein n=2 Tax=Shewanella RepID=A0KSK9_SHESA Length = 139 Score = 44.1 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 16/129 (12%) Query: 4 LPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPF 63 L +C+ L+L GCS + + A V +YT AE L + Sbjct: 24 LLVCI--LLLGGCSGATFRTNVGSVALNNA-----------IAGTVEVYTMAE-LSRHKY 69 Query: 64 RDLGEVSGDSCQASNQDSP-PSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQA 122 LG+VS C++ + I +K +++ K+ NA++ + C P C + Sbjct: 70 VGLGDVSATYCKSDIDPTVKVDIDDLKKDLKLQVQKLGGNAIIFYECGKGI-YPACQQYL 128 Query: 123 VCIGSALNI 131 C G I Sbjct: 129 ECNGEGFEI 137 >UniRef50_B1KDC0 Putative uncharacterized protein n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KDC0_SHEWM Length = 127 Score = 41.8 bits (96), Expect = 0.006, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 42 KAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKA 101 ++ A+ VR + + EE+ + LGE+ CQA PS ++ + Sbjct: 36 RSIAASDVREF-SVEEMSRREKEFLGEIRSSYCQAGLSKPSPSRSLLATDLRYKTVGLGG 94 Query: 102 NAVLLHSCEVTSGTPGCYRQAVCIGSALNI 131 N + C GC C A + Sbjct: 95 NGYTVMEC--FDSNAGCNAYLECRALAYTV 122 >UniRef50_A3XFQ4 50S ribosomal protein L20 n=1 Tax=Roseobacter sp. MED193 RepID=A3XFQ4_9RHOB Length = 130 Score = 41.0 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 10/130 (7%) Query: 5 PICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRI--YTNAEELVGKP 62 + + + L+ C P + + + TPV ++ + G Sbjct: 8 ILFALPVFLAACGDQVTYPAGIER--------DVQAIEQVSQTPVEQLPVLVSDTVNGGK 59 Query: 63 FRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQA 122 F+ L E+S +A+ P+ AR+++Q+ A+++ A+AV+ P + Sbjct: 60 FQVLAELSTTVAKATAFHPNPTADQARRKLQVEAAELGADAVINAQIGTVQVCPFSWACR 119 Query: 123 VCIGSALNIT 132 V G+A+ Sbjct: 120 VSTGTAVKFV 129 >UniRef50_Q07X97 Putative uncharacterized protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q07X97_SHEFN Length = 132 Score = 40.2 bits (92), Expect = 0.019, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 9 VALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGE 68 V +S ++LS V + + + A V YT+AE + + LG+ Sbjct: 4 VVFTVSVAAILSMVFVSGCSNLSLRTNAGTIALGNATIAGVDTYTSAE-MSRFKAQFLGD 62 Query: 69 VSGDSCQASNQ----DSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVC 124 V+ C+ S+ D PS+ + K +++ ++ NA++L C + + C C Sbjct: 63 VTTSYCENSSDPEKLDDLPSLSSMTKSLKLQVTQRGGNAIVLKQCGKVNYS-SCAVYLEC 121 Query: 125 IGSALNI 131 G A I Sbjct: 122 NGEAYVI 128 >UniRef50_A9DE69 Putative uncharacterized protein n=1 Tax=Shewanella benthica KT99 RepID=A9DE69_9GAMM Length = 127 Score = 40.2 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 51 IYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCE 110 I +AEE+ LG + SCQ PS + ++ ++ + N ++ C Sbjct: 43 IEYSAEEIQRYQSSGLGSLIASSCQQGVNSLKPSRYSIKRDLKYQTQGVGGNGYVIMECS 102 Query: 111 VTSGTPGCYRQAVCIGSALNI 131 PGCY C A +I Sbjct: 103 N-DFYPGCYAYLECRALAYDI 122 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P69412 Protein rcsF n=122 Tax=Enterobacteriaceae RepID=... 152 4e-36 UniRef50_B4F247 Regulator of colanic acid capsule synthesis n=5 ... 136 3e-31 UniRef50_B2PWB4 Putative uncharacterized protein n=2 Tax=Provide... 130 1e-29 UniRef50_A1SZQ8 Lipoprotein, putative n=1 Tax=Psychromonas ingra... 126 3e-28 UniRef50_D1P1A5 Putative uncharacterized protein n=1 Tax=Provide... 124 1e-27 UniRef50_A4SQ79 Lipoprotein, putative n=2 Tax=Aeromonas RepID=A4... 122 3e-27 UniRef50_Q7N8M5 Exopolysaccharide synthesis regulatory protein R... 119 2e-26 UniRef50_C4LBY0 Exopolysaccharide synthesis regulator RcsF n=1 T... 119 3e-26 UniRef50_D0ZBZ6 Outer membrane lipoprotein n=27 Tax=Enterobacter... 116 2e-25 UniRef50_A8H004 Putative uncharacterized protein n=1 Tax=Shewane... 109 2e-23 UniRef50_B6XDL2 Putative uncharacterized protein n=1 Tax=Provide... 109 3e-23 UniRef50_Q1ZEM2 Lipoprotein, putative n=1 Tax=Psychromonas sp. C... 104 8e-22 UniRef50_A8G0L9 Putative uncharacterized protein n=2 Tax=Shewane... 103 2e-21 UniRef50_Q480H4 Putative rcsF protein n=1 Tax=Colwellia psychrer... 102 3e-21 UniRef50_Q3IHK3 Putative uncharacterized protein n=2 Tax=Alterom... 96 2e-19 UniRef50_Q12L56 Lipoprotein, putative n=1 Tax=Shewanella denitri... 91 9e-18 UniRef50_A0KSK9 Putative uncharacterized protein n=2 Tax=Shewane... 91 1e-17 UniRef50_A3WM44 Putative uncharacterized protein n=1 Tax=Idiomar... 89 6e-17 UniRef50_A6FCG2 Lipoprotein, putative n=1 Tax=Moritella sp. PE36... 83 2e-15 UniRef50_Q5QW34 Uncharacterized conserved protein n=1 Tax=Idioma... 83 3e-15 UniRef50_A3QG56 Lipoprotein, putative n=20 Tax=Shewanella RepID=... 81 8e-15 UniRef50_UPI000190BBC3 outer membrane lipoprotein n=1 Tax=Salmon... 60 3e-08 Sequences not found previously or not previously below threshold: UniRef50_A9DE69 Putative uncharacterized protein n=1 Tax=Shewane... 70 2e-11 UniRef50_B1KDC0 Putative uncharacterized protein n=1 Tax=Shewane... 66 3e-10 UniRef50_Q07X97 Putative uncharacterized protein n=1 Tax=Shewane... 64 1e-09 UniRef50_A4C810 Putative uncharacterized protein n=1 Tax=Pseudoa... 44 0.001 UniRef50_Q1MXM4 Putative uncharacterized protein n=1 Tax=Bermane... 43 0.004 UniRef50_A3XFQ4 50S ribosomal protein L20 n=1 Tax=Roseobacter sp... 40 0.023 UniRef50_A6W0B3 Putative uncharacterized protein n=1 Tax=Marinom... 39 0.049 >UniRef50_P69412 Protein rcsF n=122 Tax=Enterobacteriaceae RepID=RCSF_ECOL6 Length = 134 Score = 152 bits (383), Expect = 4e-36, Method: Composition-based stats. Identities = 134/134 (100%), Positives = 134/134 (100%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG Sbjct: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR Sbjct: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 Query: 121 QAVCIGSALNITAK 134 QAVCIGSALNITAK Sbjct: 121 QAVCIGSALNITAK 134 >UniRef50_B4F247 Regulator of colanic acid capsule synthesis n=5 Tax=Enterobacteriaceae RepID=B4F247_PROMH Length = 136 Score = 136 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 64/134 (47%), Positives = 88/134 (65%), Gaps = 3/134 (2%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKA--EPAKPKAPRATPVRIYTNAEEL 58 MR L I ++AL ++GCSM S V+ + T + +P KPK +PVRI E+L Sbjct: 3 MRLLLIGIIALFMTGCSMQKSSDVDQSKFTDMRLNKPGQPQKPKQQTLSPVRIVEKTEDL 62 Query: 59 VGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGC 118 +G PF+DLG V+G+SC+ + QD P S+P A+KRM I A+ ANAVLLH C++ +G GC Sbjct: 63 LGAPFKDLGVVAGESCRQTLQDPPASLPAAKKRMAIKAAYKNANAVLLHECQIVTGM-GC 121 Query: 119 YRQAVCIGSALNIT 132 Y+ A+C GSAL IT Sbjct: 122 YQSAICEGSALLIT 135 >UniRef50_B2PWB4 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2PWB4_PROST Length = 134 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 5/135 (3%) Query: 1 MRALPICLVALMLSGCSMLSR---SPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEE 57 MR L + L +L+GC M P + S K P P T V++ + EE Sbjct: 1 MRLLLLTLATFVLAGCGMNQYIHQGPNKGFTSM-KLSKPVPKTDTKPSTTNVKLMNSPEE 59 Query: 58 LVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPG 117 L+G PF+DLG VSG SC+ S Q P ++ TA+K M A+ + A+AV+LH C+ T +PG Sbjct: 60 LLGMPFKDLGVVSGQSCRESLQSPPANLNTAKKSMLTKAAYIAADAVVLHQCQ-TMASPG 118 Query: 118 CYRQAVCIGSALNIT 132 CY+ +C GSA+ I Sbjct: 119 CYQATICEGSAIKIV 133 >UniRef50_A1SZQ8 Lipoprotein, putative n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SZQ8_PSYIN Length = 144 Score = 126 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 +R + I L+ + CS L S + + + KP + V +Y +L G Sbjct: 19 LRFIIISFTVLLTTACSNLDFSS-----NLDKKNFDDYFKP-----SRVTVYEKP-QLQG 67 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 ++ + V G SCQ D P I AR +I A++M AN ++ +C + C Sbjct: 68 LDYQFIAAVDGSSCQQEEIDRPADIKEARTNARIKAAEMNANGIVFQNCLIFEQDASCIS 127 Query: 121 QAVCIGSALNI 131 +C A+++ Sbjct: 128 NIICYARAISV 138 >UniRef50_D1P1A5 Putative uncharacterized protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P1A5_9ENTR Length = 156 Score = 124 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 5/136 (3%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAP----QPKAEPAKPKAPRATPVRIYTNAE 56 MR + L A ML+GC + + + + +P + K + A +++ + E Sbjct: 21 MRLFLLTLAAFMLAGCGINQYTSPSMNKGFSSMKISKPVPKATKEEDVSAEKIKLMNSPE 80 Query: 57 ELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTP 116 EL+G PF+DLG VSG+ C+ + + P ++ +A+ M A+ + A+AVLLH C+ TS P Sbjct: 81 ELLGMPFKDLGVVSGEDCRKNAKSPPANLDSAKNSMLTQAAYIAADAVLLHQCQ-TSTAP 139 Query: 117 GCYRQAVCIGSALNIT 132 GCY+ VC GSAL I Sbjct: 140 GCYQATVCEGSALKIV 155 >UniRef50_A4SQ79 Lipoprotein, putative n=2 Tax=Aeromonas RepID=A4SQ79_AERS4 Length = 123 Score = 122 bits (306), Expect = 3e-27, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%) Query: 5 PICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFR 64 I ++ L+ SGC+ S + ++ + E KP V+IY +L + Sbjct: 4 LILMMPLIASGCADFSFN-----RNLDKENFDEYFKP-----GGVQIYEQ-NQLADLNYL 52 Query: 65 DLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVC 124 LG V G+SCQ+ + P+ AR + + M N V C S TPGC +Q +C Sbjct: 53 YLGTVEGESCQSDAKQPVPNAGEARTLARRRVADMGGNGVTFDKCAEFSDTPGCLKQVIC 112 Query: 125 IGSALNI 131 G AL + Sbjct: 113 YGQALKV 119 >UniRef50_Q7N8M5 Exopolysaccharide synthesis regulatory protein RcsF n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N8M5_PHOLL Length = 132 Score = 119 bits (299), Expect = 2e-26, Method: Composition-based stats. Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%) Query: 13 LSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGD 72 ++GCS+ + + Q + + K ++ V++YT +EEL+G F+DLG VSG Sbjct: 13 ITGCSVQQATFPDASQLSDMKYTKLSTGEKKHFSSSVKLYTKSEELLGVSFKDLGIVSGQ 72 Query: 73 SCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT 132 SC++S QD P +I AR +M A+ + ANAVLLH CE+ SG GCY+ A+C GSAL IT Sbjct: 73 SCRSSLQDPPANIIVARNQMMTKAAYLNANAVLLHQCEILSG-QGCYQIAICEGSALLIT 131 >UniRef50_C4LBY0 Exopolysaccharide synthesis regulator RcsF n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBY0_TOLAT Length = 125 Score = 119 bits (297), Expect = 3e-26, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 12/132 (9%) Query: 1 MRALPIC-LVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELV 59 M+ LP L+ MLSGCS+ + + + E KP + V + A +L+ Sbjct: 1 MKTLPFTALMLTMLSGCSLFQVN-----TNLDKENFTEYFKP-----SSVAVMDKA-QLL 49 Query: 60 GKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCY 119 +G V G+SCQ+ P+I A+ + A+ M NAV+ C V + C Sbjct: 50 DADATPVGTVEGESCQSDTTQPVPNITDAQTDARRKAADMGGNAVVFGKCAVVPPSSECI 109 Query: 120 RQAVCIGSALNI 131 VC G + Sbjct: 110 SSLVCYGQVYQV 121 >UniRef50_D0ZBZ6 Outer membrane lipoprotein n=27 Tax=Enterobacteriaceae RepID=D0ZBZ6_EDWTE Length = 140 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 79/136 (58%), Positives = 98/136 (72%), Gaps = 6/136 (4%) Query: 1 MRALPICLVA--LMLSGCSMLSRSPVEPVQSTAPQPKAEP-AKPKA--PRATPVRIYTNA 55 MRALP+CL+ L LSGCS+LSR P P++ A E AKP+A PR TP+ +Y +A Sbjct: 1 MRALPLCLLTASLALSGCSLLSR-PAAPIKPLAADRTPETVAKPRAVTPRQTPITLYESA 59 Query: 56 EELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGT 115 E+L+GKPFRDLGEVSG CQ S PS+ TARKRM A+++KANAVLLHSC++ S + Sbjct: 60 EDLIGKPFRDLGEVSGSVCQTRPHHSAPSLTTARKRMLYKAAQLKANAVLLHSCQILSQS 119 Query: 116 PGCYRQAVCIGSALNI 131 GCYRQA C GSAL+I Sbjct: 120 HGCYRQATCTGSALSI 135 >UniRef50_A8H004 Putative uncharacterized protein n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H004_SHEPA Length = 126 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 12/131 (9%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 ++ + + + ++ C + + + + T + +AEE+ Sbjct: 5 LKFIVLTAALMGMTACQGVRFNTNLTPEFVVDKY-----------QTSQIVEYSAEEVYN 53 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 + +G+VS CQ + PP + + ++ KM N +++ C + C Sbjct: 54 HDSQMIGDVSAAYCQ-TLNTPPPIYSSIIETLKYKVHKMGGNGIVVMECLKDNPYASCIA 112 Query: 121 QAVCIGSALNI 131 C A + Sbjct: 113 HLECRALAYEV 123 >UniRef50_B6XDL2 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XDL2_9ENTR Length = 135 Score = 109 bits (271), Expect = 3e-23, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQ--STAPQPKAEP-AKPKAPRATPVRIYTNAEE 57 MR + L L+GC + + + S+ K P + A +++ + EE Sbjct: 1 MRLFLLALATFALAGCGINQYTSPSMNKGFSSMKLSKPLPVETEEDVSAENIKLMNSPEE 60 Query: 58 LVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPG 117 L+G PFRDLG VSG+SC+ + + P ++ +A+ M A+ + A+AVLLH C+ T PG Sbjct: 61 LLGMPFRDLGIVSGESCRKNAKSPPINLDSAKNSMLTQAAYIAADAVLLHQCQ-TKSAPG 119 Query: 118 CYRQAVCIGSALNIT 132 CY+ VC GSAL I Sbjct: 120 CYQATVCEGSALKIV 134 >UniRef50_Q1ZEM2 Lipoprotein, putative n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEM2_9GAMM Length = 124 Score = 104 bits (259), Expect = 8e-22, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 11/118 (9%) Query: 14 SGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDS 73 CS S + Q + KP + V IY+ EE + LG ++G S Sbjct: 14 GACSQYPFSS-----NVDKQNFSTYFKP-----SSVTIYSK-EEATKLDAQWLGAITGSS 62 Query: 74 CQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNI 131 CQ D P S AR + +INA+ + AN ++ +C C +C A+++ Sbjct: 63 CQIEINDRPASKADARTKARINAANLDANGIVFQTCVTFEADSSCLSNVICYARAISV 120 >UniRef50_A8G0L9 Putative uncharacterized protein n=2 Tax=Shewanella RepID=A8G0L9_SHESH Length = 125 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 14/131 (10%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 M+ L + L LS C + P+ ++ R V+ Y+ AE + Sbjct: 4 MKLLMTVFLLLSLSAC-------------NGIRLNTIPSVDESLRTYKVQEYSIAE-IQR 49 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 LG+V C+ P+ ++ ++ N V++ C C Sbjct: 50 YKAESLGKVVSSYCRTRPTQPKPTESFLLGELKYKTQRLGGNGVVIMECVDHRLNNSCND 109 Query: 121 QAVCIGSALNI 131 C A + Sbjct: 110 YLECRALAYRV 120 >UniRef50_Q480H4 Putative rcsF protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480H4_COLP3 Length = 140 Score = 102 bits (254), Expect = 3e-21, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 11/129 (8%) Query: 3 ALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKP 62 AL + L+ ML GC + +S AE + A+ V+I+ N E+ Sbjct: 14 ALTVVLLTTMLGGC-----TGNYTFESNVKADNAE----EYFSASKVKIF-NDEQDFNVN 63 Query: 63 FRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQA 122 ++ +G V G+ CQ + P AR + + A KANA++ SC T C Q Sbjct: 64 YQYVGLVEGEDCQKEPHLAAPDAINARTQARQAAYLKKANAIIFTSCIDIE-TKHCVAQV 122 Query: 123 VCIGSALNI 131 VC G A + Sbjct: 123 VCYGKAYRL 131 >UniRef50_Q3IHK3 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IHK3_PSEHT Length = 130 Score = 96.5 bits (238), Expect = 2e-19, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 12/134 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 +R + I LSGCS ++ ++ ++ + + +E Sbjct: 2 LRFMAIITALATLSGCSNMTFH-----TDIDNDVLSQEIG-TYVNKRDLQQFYSDQEAHE 55 Query: 61 KPFRDLGEVSGDSCQ-----ASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGT 115 LG ++G+SC +N S A ++ +A + ANA ++SC TS + Sbjct: 56 SGATLLGRIAGESCDGDGMGNNNVSYNRSKSNAIDLLKADAMRRGANAFTINSCSETSVS 115 Query: 116 PGCYRQAVCIGSAL 129 C +C G A Sbjct: 116 Y-CDLSVLCTGQAY 128 >UniRef50_Q12L56 Lipoprotein, putative n=1 Tax=Shewanella denitrificans OS217 RepID=Q12L56_SHEDO Length = 130 Score = 91.1 bits (224), Expect = 9e-18, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 11/132 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 +R L V L+++ C+ + P+ + KP + V ++ A Sbjct: 6 LRNLSCGAVTLLITACAG----DYGFKSNLDPKAINDYFKP-----SEVTVFD-ANSSPS 55 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTS-GTPGCY 119 PF+ L VSG++CQ D+P SI AR + A+ + AN +++ SC++ C Sbjct: 56 APFKRLKLVSGETCQIKENDAPASIADARTLARRAAADLGANGIIIQSCQLIEVPEQDCV 115 Query: 120 RQAVCIGSALNI 131 +A+C+ A+ I Sbjct: 116 SRALCVAQAIKI 127 >UniRef50_A0KSK9 Putative uncharacterized protein n=2 Tax=Shewanella RepID=A0KSK9_SHESA Length = 139 Score = 91.1 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 16/130 (12%) Query: 3 ALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKP 62 L +C+ L+L GCS + + A V +YT AE L Sbjct: 23 YLLVCI--LLLGGCSGATFRTNVGSVALNNA-----------IAGTVEVYTMAE-LSRHK 68 Query: 63 FRDLGEVSGDSCQASNQDSP-PSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQ 121 + LG+VS C++ + I +K +++ K+ NA++ + C P C + Sbjct: 69 YVGLGDVSATYCKSDIDPTVKVDIDDLKKDLKLQVQKLGGNAIIFYECGKGI-YPACQQY 127 Query: 122 AVCIGSALNI 131 C G I Sbjct: 128 LECNGEGFEI 137 >UniRef50_A3WM44 Putative uncharacterized protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WM44_9GAMM Length = 111 Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 29 STAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTA 88 ST Q ++ + +A P + + ++L + L V+GDSCQA+ + +P S A Sbjct: 5 STGNQYGSQESALRALNVVPNEVELHDQQLNPNRHKILSVVTGDSCQATFRGAPASTLDA 64 Query: 89 RKRMQINASKMKANAVLLHSCEV--TSGTPGCYRQAVCIGSA 128 ++ ++ +A++ A V C T + CY Q C+G A Sbjct: 65 QQALRNDAARFNATDVFAVQCFNIPTDSSARCYTQVSCVGKA 106 >UniRef50_A6FCG2 Lipoprotein, putative n=1 Tax=Moritella sp. PE36 RepID=A6FCG2_9GAMM Length = 129 Score = 83.4 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 11/119 (9%) Query: 14 SGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDS 73 SGCS + E + V YT A L LG V G+S Sbjct: 12 SGCSNYPLQ-----TNLDKNNFTEYF-----SISGVEYYT-ASALQNYQVEQLGLVEGES 60 Query: 74 CQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT 132 CQ+++ P A+ + A+ + AN +++ SC + C VC G A+ +T Sbjct: 61 CQSADNLPPAEQQQAKIAAKRKAAALNANGIIIRSCIAPPASKSCLSSYVCYGDAIKVT 119 >UniRef50_Q5QW34 Uncharacterized conserved protein n=1 Tax=Idiomarina loihiensis RepID=Q5QW34_IDILO Length = 98 Score = 83.0 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 43 APRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN 102 + V +Y + + + + V+G+SCQ + + S A + ++ +A + KA+ Sbjct: 7 QIDSGDVEVYRGDNK-PSRAYELISIVNGESCQRKFRGAEASANDAVEALREDAVRFKAH 65 Query: 103 AVLLHSCEVT--SGTPGCYRQAVCIGSALN 130 A++ C CY + C+G A+ Sbjct: 66 AIIGAQCFSFKPEADSICYSEVSCVGRAIQ 95 >UniRef50_A3QG56 Lipoprotein, putative n=20 Tax=Shewanella RepID=A3QG56_SHELP Length = 138 Score = 81.4 bits (199), Expect = 8e-15, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 12/119 (10%) Query: 14 SGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDS 73 GC+ + Q + K A V+++ + P++ G V G+S Sbjct: 26 GGCAG----EYTFNSNLDGQAIDDYFK-----AGEVQLFQETQ--PKGPYKLKGMVEGES 74 Query: 74 CQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVT-SGTPGCYRQAVCIGSALNI 131 CQ QD P S+ AR + A+ AN +++ C + + C QA+C+G A+ + Sbjct: 75 CQERAQDVPASVSEARTMARRAAADKGANGLIIKRCALIEEPSKACVSQALCVGQAILL 133 >UniRef50_A9DE69 Putative uncharacterized protein n=1 Tax=Shewanella benthica KT99 RepID=A9DE69_9GAMM Length = 127 Score = 69.9 bits (169), Expect = 2e-11, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 9/131 (6%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 M+ L + L+ ++LS CS + + A V I +AEE+ Sbjct: 1 MKILLVLLLPVLLSACSGIKFKSNISPVLA-------EHVQDSVDADKV-IEYSAEEIQR 52 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR 120 LG + SCQ PS + ++ ++ + N ++ C PGCY Sbjct: 53 YQSSGLGSLIASSCQQGVNSLKPSRYSIKRDLKYQTQGVGGNGYVIMECSND-FYPGCYA 111 Query: 121 QAVCIGSALNI 131 C A +I Sbjct: 112 YLECRALAYDI 122 >UniRef50_B1KDC0 Putative uncharacterized protein n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KDC0_SHEWM Length = 127 Score = 66.0 bits (159), Expect = 3e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 42 KAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKA 101 ++ A+ VR + + EE+ + LGE+ CQA PS ++ + Sbjct: 36 RSIAASDVREF-SVEEMSRREKEFLGEIRSSYCQAGLSKPSPSRSLLATDLRYKTVGLGG 94 Query: 102 NAVLLHSCEVTSGTPGCYRQAVCIGSALNI 131 N + C GC C A + Sbjct: 95 NGYTVMEC--FDSNAGCNAYLECRALAYTV 122 >UniRef50_Q07X97 Putative uncharacterized protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q07X97_SHEFN Length = 132 Score = 64.1 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 17/129 (13%) Query: 7 CLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDL 66 L + +SGCS LS + A V YT+AE + + L Sbjct: 13 ILSMVFVSGCSNLSLRTNAGTIALGNATIA-----------GVDTYTSAE-MSRFKAQFL 60 Query: 67 GEVSGDSCQASNQDSP----PSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQA 122 G+V+ C+ S+ PS+ + K +++ ++ NA++L C + C Sbjct: 61 GDVTTSYCENSSDPEKLDDLPSLSSMTKSLKLQVTQRGGNAIVLKQCGKVN-YSSCAVYL 119 Query: 123 VCIGSALNI 131 C G A I Sbjct: 120 ECNGEAYVI 128 >UniRef50_UPI000190BBC3 outer membrane lipoprotein n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190BBC3 Length = 54 Score = 59.9 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 46/54 (85%), Positives = 49/54 (90%) Query: 27 VQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQD 80 VQSTA PKAEP KPKAPRA PVRIYTNAE+LVGKPFRDLGEVSG+SCQA+NQ Sbjct: 1 VQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQS 54 >UniRef50_A4C810 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C810_9GAMM Length = 148 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 48/137 (35%), Gaps = 9/137 (6%) Query: 2 RALPICLVALMLSGCS--------MLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYT 53 R + + L+ GC+ + + + +S + + + + + + + Sbjct: 6 RNIFLLFSLLIFVGCTAVPNQKAEIKQANASKKQKSNLAKTQTADKQIYQIKPSNLVVIK 65 Query: 54 NAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTS 113 + + LG ++ C +++ ++ A + ANA+++ C T Sbjct: 66 SVQSAQELGAIKLGFITSKRCISTSHQLSWIEKKVLFDLKKKAFDLGANALVVDYCHKTI 125 Query: 114 GTPGCYRQAVCIGSALN 130 + C + C A + Sbjct: 126 QS-DCAQMYRCEAIAFS 141 >UniRef50_Q1MXM4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MXM4_9GAMM Length = 129 Score = 42.5 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 10/101 (9%) Query: 4 LPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPF 63 + + L + CS + T + K V++ + + Sbjct: 10 IAAIIGLLSMGACSSMP------GAKTGNDLSYLSLRDKRLSEKRVQVLSQTPQSSDV-- 61 Query: 64 RDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAV 104 LG V+ CQ S P T M+ A ++ ANA+ Sbjct: 62 --LGVVTTKRCQTSVFSEEPQEKTLLVDMKAEAYRLGANAI 100 >UniRef50_A3XFQ4 50S ribosomal protein L20 n=1 Tax=Roseobacter sp. MED193 RepID=A3XFQ4_9RHOB Length = 130 Score = 40.2 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 11/134 (8%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRI--YTNAEEL 58 M+ + L + L+ C P + + TPV ++ + Sbjct: 5 MKRILFAL-PVFLAACGDQVTYPAGIERDV--------QAIEQVSQTPVEQLPVLVSDTV 55 Query: 59 VGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGC 118 G F+ L E+S +A+ P+ AR+++Q+ A+++ A+AV+ P Sbjct: 56 NGGKFQVLAELSTTVAKATAFHPNPTADQARRKLQVEAAELGADAVINAQIGTVQVCPFS 115 Query: 119 YRQAVCIGSALNIT 132 + V G+A+ Sbjct: 116 WACRVSTGTAVKFV 129 >UniRef50_A6W0B3 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0B3_MARMS Length = 145 Score = 39.1 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 18/108 (16%) Query: 1 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG 60 ++ L + + +L GCS + + V T EE Sbjct: 5 IKYLSVLALPALLFGCS----------------SGSHVVTGQQMPELEVEQVTVFEEAPA 48 Query: 61 KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHS 108 ++ +G V S +DS A + ++ A+K+ AN V+L Sbjct: 49 FDYKVIGTVQASSDGGFTEDS--RKEKATQELKEQAAKIGANGVILDE 94 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.119 0.318 Lambda K H 0.267 0.0362 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 553,340,876 Number of Sequences: 3077464 Number of extensions: 15893585 Number of successful extensions: 105966 Number of sequences better than 1.0e-01: 30 Number of HSP's better than 0.1 without gapping: 56 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 105839 Number of HSP's gapped (non-prelim): 78 length of query: 134 length of database: 1,040,396,356 effective HSP length: 99 effective length of query: 35 effective length of database: 735,727,420 effective search space: 25750459700 effective search space used: 25750459700 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 86 (37.9 bits)