Phyre 2 alignment of P27838 with c2xqyA_

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Job Description | P27838
Confidence | 4.11% | Date | Thu Jan 5 11:44:15 GMT 2012
Rank | 72 | Aligned Residues | 24
% Identity | 17% | Template | c2xqyA_
PDB info | PDB header:immune system/viral protein | Chain: A: PDB Molecule:envelope glycoprotein h; | PDBTitle: crystal structure of pseudorabies core fragment of2 glycoprotein h in complex with fab d6.3
Resolution | 2.05 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 35 | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | N | G | G | V | L | T | I | T | F | E | N | G | S | K | I | I | I | N | R | Q | E | P | L | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | E | A | L | L | A | L | P | L | R | G | G | A | S | F | V | F | T | R | R | R | P | D | C
Template Known Secondary structure |  | T | T |  | S |  |  |  |  |  | S | S | S |  |  |  |  |  |  | S | S |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 497 | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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