Phyre 2 alignment of P27838 with c2v5iA_

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Job Description | P27838
Confidence | 18.06% | Date | Thu Jan 5 11:44:15 GMT 2012
Rank | 14 | Aligned Residues | 67
% Identity | 24% | Template | c2v5iA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7 | PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus
Resolution | 1.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | 40 | . | . | . |  |  |  |  |  | . | . | . | . | . | . | 50 | . | . |  |  | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |  | . | . | . |  | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  | . |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  | . |  |  |  |
Query Sequence |  | L | W | L | T | I | E | E | R | L | D | D | W | D | G | D | S | D | I | . | . | . | . | . | . | D | C | E | I | N | G | G | V | L | T | I | T | F | . | . | . | . | . | E | N | G | S | K | I | I | I | N | . | . | R | Q | E | P | L | H | Q | V | W | L | A | T | K | Q | G | G | Y | H | . | F | D | L | . | K | G | D | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  | . |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  | . |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | Q | D | A | V | T | D | A | V | D | G | L | L | I | D | I | N | Y | N | F | T | D | G | E | S | V | D | F | X | G | K | I | L | T | I | N | C | K | A | K | F | I | G | D | G | A | L | I | F | N | N | M | G | P | G | S | V | I | N | Q | P | F | M | E | S | K | T | T | P | W | V | I | F | P | W | D | A | D | G | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  | S |  |  |  |  |  | T | T |  |  |  |  |  | T | T |  |  |  |  |  |  |  | S | S |  |  |  |  | S |  |  |  |  |  |  | S |  |  | T | T |  |  |  |  | S |  |  |  |  |  | S | S |  |  |  |  | B |  |  | B |  | T | T | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | .
|  | 78 | .
Predicted Secondary structure |  |  |
Query SS confidence |  |  |
Query Sequence |  | W | I
Query Conservation |  |  |
Alig confidence |  |  |
Template Conservation |  |  |
Template Sequence |  | W | I
Template Known Secondary structure |  | B |
Template Predicted Secondary structure |  |  |
Template SS confidence |  |  |
|  | 258 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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