Phyre 2 alignment of P27838 with c2p3yA_

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Job Description | P27838
Confidence | 6.07% | Date | Thu Jan 5 11:44:15 GMT 2012
Rank | 42 | Aligned Residues | 37
% Identity | 19% | Template | c2p3yA_
PDB info | PDB header:structural genomics, unknown function | Chain: A: PDB Molecule:hypothetical protein vpa0735; | PDBTitle: crystal structure of vpa0735 from vibrio parahaemolyticus. northeast2 structural genomics target vpr109
Resolution | 1.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |  | . | . | . | . |  | . | . | . | . | . | 70 | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |
Query Sequence |  | G | G | V | L | T | I | T | F | E | N | G | S | K | I | I | I | N | R | Q | E | P | L | H | Q | V | . | W | L | A | T | . | K | Q | G | G | Y | H | F | D | L | K | . | . | . | . | . | . | . | . | . | G | D | E | W | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | G | S | I | D | V | Y | Y | G | . | . | . | . | . | . | . | P | K | P | V | K | G | Y | E | N | N | W | V | Q | T | N | P | G | E | G | W | F | T | Y | F | R | F | Y | G | P | T | E | K | X | F | D | K | S | W | T
Template Known Secondary structure |  | T | S |  |  |  |  |  |  | S | . | . | . | . | . | . | . | S | S |  |  | T | T |  | T | T | S | B |  |  |  |  | T | T |  | B |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 428 | . | 430 | . | . | . | . | . | . |  |  |  |  |  |  |  | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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