16/01/2012 09:14:50 : INFO  : Run start: Mon Jan 16 09:14:50 GMT 2012
16/01/2012 09:14:53 : INFO  : Initialised job
16/01/2012 09:14:54 : INFO  : Renaming log file 'phyre2_20120116_091449.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/3a8c8c7d76345cfa/phyre_20120116_091449.log'
16/01/2012 09:14:55 : INFO  : Initialised job:
Sequence
>batch____
MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKAT
LDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYAEN
INAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGEIFKVPEPFIP
KSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYDVQNK
AGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQERYHRFRNDEA
FLQQVMKDGAEKASAHASRTLKAVYEAIGFVAKP

16/01/2012 09:14:56 : INFO  : Checked sequence
16/01/2012 09:14:58 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 09:14:58 : INFO  : PSI-BLAST 3 iterations
16/01/2012 09:16:57 : INFO  : PSI-BLAST 5 iterations
16/01/2012 09:18:35 : INFO  : Finished PSI-BLAST
16/01/2012 09:18:36 : INFO  : Running Buildali to generate a3m file
16/01/2012 09:25:08 : INFO  : Converting to HMM
16/01/2012 09:25:10 : INFO  : Calibrating HMM
16/01/2012 09:25:24 : INFO  : Searching HMM database
16/01/2012 09:32:39 : INFO  : Finished buildali
16/01/2012 09:32:40 : INFO  : Predicting secondary structure
16/01/2012 09:32:45 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 09:32:45 : INFO  : Predicting Disordered regions
16/01/2012 09:32:48 : INFO  : Predicted Disorder (Disopred)
16/01/2012 09:32:48 : INFO  : Running memsat_svm check
16/01/2012 09:35:28 : INFO  : Globular protein
16/01/2012 09:35:29 : INFO  : Predicted Transmembrane (memsat_svm) ID '3a8c8c7d76345cfa'
16/01/2012 09:35:29 : INFO  : Initialising fold library search
16/01/2012 09:35:31 : INFO  : Initialised search input
16/01/2012 09:35:32 : INFO  : Building Ensemble models
16/01/2012 09:35:34 : INFO  : Building hh.c3n9iA_.model.1.pdb
16/01/2012 09:35:45 : INFO  : Building c3n9iA_.1.pdb
16/01/2012 09:35:52 : INFO  : Building c3sz3A_.2.pdb
16/01/2012 09:36:00 : INFO  : Building d1i6la_.3.pdb
16/01/2012 09:36:08 : INFO  : Building c3prhB_.4.pdb
16/01/2012 09:36:17 : INFO  : Building c2yy5C_.5.pdb
16/01/2012 09:36:25 : INFO  : Building c1yi8C_.6.pdb
16/01/2012 09:36:33 : INFO  : Building c3m5wB_.7.pdb
16/01/2012 09:36:42 : INFO  : Building c2el7A_.8.pdb
16/01/2012 09:36:51 : INFO  : Building c2g36A_.9.pdb
16/01/2012 09:36:58 : INFO  : Building c2cycB_.10.pdb
16/01/2012 09:37:06 : INFO  : Building c2cybA_.11.pdb
16/01/2012 09:37:15 : INFO  : Building c3a05A_.12.pdb
16/01/2012 09:37:24 : INFO  : Building c2quiB_.13.pdb
16/01/2012 09:37:32 : INFO  : Building c3jxeB_.14.pdb
16/01/2012 09:37:40 : INFO  : Building c3p0jD_.15.pdb
16/01/2012 09:37:49 : INFO  : Building c2cyaA_.16.pdb
16/01/2012 09:37:58 : INFO  : Building c3focB_.17.pdb
16/01/2012 09:38:06 : INFO  : Building c3hzrD_.18.pdb
16/01/2012 09:38:14 : INFO  : Building c2j5bA_.19.pdb
16/01/2012 09:38:22 : INFO  : Building d1r6ta2.20.pdb
16/01/2012 09:38:41 : INFO  : Finished HH model building
16/01/2012 09:38:42 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 09:39:22 : INFO  : html domain output complete ID '3a8c8c7d76345cfa'
16/01/2012 11:32:07 : INFO  : Run end  : Mon Jan 16 11:32:06 GMT 2012
