Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	A	P	L	Y	R	N	A	L	L	L	T	G	L	L	L	S	G	I	A	A	V	Q	A	A	D	W	P	R	Q	I	T	D	S	R	G	T	H	T	L	E	S	Q	P	Q	R	I	V	S	T	S	V	T	L	T	G	S	L
Secondary structure
SS confidence
Disorder		?	?	?	?															?	?	?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	A	I	D	A	P	V	I	A	S	G	A	T	T	P	N	N	R	V	A	D	D	Q	G	F	L	R	Q	W	S	K	V	A	K	E	R	K	L	Q	R	L	Y	I	G	E	P	S	A	E	A	V	A	A	Q	M	P	D	L	I	L
Secondary structure
SS confidence
Disorder																	?	?	?														?	?		?	?	?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	S	A	T	G	G	D	S	A	L	A	L	Y	D	Q	L	S	T	I	A	P	T	L	I	I	N	Y	D	D	K	S	W	Q	S	L	L	T	Q	L	G	E	I	T	G	H	E	K	Q	A	A	E	R	I	A	Q	F	D	K	Q	L
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	A	A	K	E	Q	I	K	L	P	P	Q	P	V	T	A	I	V	Y	T	A	A	A	H	S	A	N	L	W	T	P	E	S	A	Q	G	Q	M	L	E	Q	L	G	F	T	L	A	K	L	P	A	G	L	N	A	S	Q	S	Q	G
Secondary structure
SS confidence
Disorder									?	?	?	?																																					?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	R	H	D	I	I	Q	L	G	G	E	N	L	A	A	G	L	N	G	E	S	L	F	L	F	A	G	D	Q	K	D	A	D	A	I	Y	A	N	P	L	L	A	H	L	P	A	V	Q	N	K	Q	V	Y	A	L	G	T	E	T	F
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Sequence		R	L	D	Y	Y	S	A	M	Q	V	L	D	R	L	K	A	L	F
Secondary structure
SS confidence
Disorder		?	?															?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3eiw chain A Region: 28 - 318 Aligned: 281 Modelled: 291 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa Phyre2 PDB 3psh chain A Region: 31 - 317 Aligned: 270 Modelled: 287 Confidence: 100.0% Identity: 15% PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) Phyre2 PDB 3be5 chain D Region: 28 - 318 Aligned: 277 Modelled: 291 Confidence: 100.0% Identity: 21% PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein Phyre2 PDB 2chu chain A domain 1 Region: 22 - 316 Aligned: 265 Modelled: 283 Confidence: 100.0% Identity: 23% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 3gfv chain A Region: 29 - 318 Aligned: 271 Modelled: 279 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis Phyre2 PDB 2phz chain A Region: 31 - 316 Aligned: 265 Modelled: 286 Confidence: 100.0% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. Phyre2 PDB 2phz chain A domain 1 Region: 31 - 316 Aligned: 265 Modelled: 286 Confidence: 100.0% Identity: 18% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 2x4l chain A Region: 30 - 318 Aligned: 279 Modelled: 286 Confidence: 100.0% Identity: 17% PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor Phyre2 PDB 1esz chain A Region: 45 - 316 Aligned: 254 Modelled: 264 Confidence: 100.0% Identity: 19% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Periplasmic ferric siderophore binding protein FhuD Phyre2 PDB 2q8p chain A Region: 48 - 318 Aligned: 246 Modelled: 253 Confidence: 100.0% Identity: 22% PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme Phyre2 PDB 3g9q chain A Region: 42 - 318 Aligned: 253 Modelled: 267 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a Phyre2 PDB 3mwg chain A Region: 47 - 318 Aligned: 256 Modelled: 258 Confidence: 100.0% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira Phyre2 PDB 2r79 chain A Region: 46 - 317 Aligned: 245 Modelled: 258 Confidence: 100.0% Identity: 20% PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa Phyre2 PDB 2r7a chain C Region: 46 - 318 Aligned: 248 Modelled: 249 Confidence: 100.0% Identity: 15% PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae Phyre2 PDB 3md9 chain A Region: 47 - 317 Aligned: 244 Modelled: 271 Confidence: 100.0% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein Phyre2 PDB 2etv chain A domain 1 Region: 35 - 318 Aligned: 262 Modelled: 270 Confidence: 100.0% Identity: 14% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 1n2z chain A Region: 46 - 317 Aligned: 239 Modelled: 258 Confidence: 100.0% Identity: 17% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TroA-like Phyre2 PDB 3pdi chain G Region: 64 - 318 Aligned: 236 Modelled: 255 Confidence: 97.6% Identity: 11% PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen Phyre2 PDB 1mio chain A Region: 119 - 316 Aligned: 181 Modelled: 198 Confidence: 97.2% Identity: 15% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 3pdi chain B Region: 104 - 314 Aligned: 198 Modelled: 211 Confidence: 97.1% Identity: 17% PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen Phyre2 1 c3eiwA_ 2 c3pshA_ 3 c3be5D_ 4 d2chua1 5 c3gfvA_ 6 c2phzA_ 7 d2phza1 8 c2x4lA_ 9 d1esza_ 10 c2q8pA_ 11 c3g9qA_ 12 c3mwgA_ 13 c2r79A_ 14 c2r7aC_ 15 c3md9A_ 16 d2etva1 17 d1n2za_ 18 c3pdiG_ 19 d1mioa_ 20 c3pdiB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3eiwA_ 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa 2 c3pshA_ 100.0 15 PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) 3 c3be5D_ 100.0 21 PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein 4 d2chua1 100.0 23 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 5 c3gfvA_ 100.0 21 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis 6 c2phzA_ 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. 7 d2phza1 100.0 18 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 8 c2x4lA_ 100.0 17 PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor 9 d1esza_ 100.0 19 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Periplasmic ferric siderophore binding protein FhuD 10 c2q8pA_ 100.0 22 PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme 11 c3g9qA_ 100.0 21 PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a 12 c3mwgA_ 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira 13 c2r79A_ 100.0 20 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa 14 c2r7aC_ 100.0 15 PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae 15 c3md9A_ 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein 16 d2etva1 100.0 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 17 d1n2za_ 100.0 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 18 c3pdiG_ 97.6 11 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 19 d1mioa_ 97.2 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 20 c3pdiB_ 97.1 17 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 21 d1qh8a_ not modelled 97.0 10 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 22 d1m1na_ not modelled 96.8 7 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 23 d1m1nb_ not modelled 95.9 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 24 c3aerC_ not modelled 95.8 9 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 25 d1miob_ not modelled 95.8 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 26 d1qh8b_ not modelled 93.9 12 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 27 c2xdqB_ not modelled 90.4 10 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 28 d1a9xb2 not modelled 74.8 28 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 29 c2yxbA_ not modelled 58.1 19 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 30 c1keeH_ not modelled 43.2 28 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 31 c3ndjA_ not modelled 42.6 7 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 32 c3obiC_ not modelled 36.2 9 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 33 c3czpA_ not modelled 35.2 12 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from pseudomonas2 aeruginosa pa01 34 c3rfoA_ not modelled 32.1 16 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis 35 c1z7eC_ not modelled 27.6 24 PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna 36 d7reqa2 not modelled 22.1 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 37 d1q3qa2 not modelled 21.6 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 38 c2z4dA_ not modelled 21.5 11 PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13; PDBTitle: nmr structures of yeast proteasome component rpn13 39 d1gmla_ not modelled 21.5 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 40 c2r8rB_ not modelled 20.2 22 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 41 c2g04B_ not modelled 19.3 16 PDB header:isomerase Chain: B: PDB Molecule:probable fatty-acid-coa racemase far; PDBTitle: crystal structure of fatty acid-coa racemase from mycobacterium2 tuberculosis h37rv 42 d1zgha2 not modelled 18.8 24 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 43 c3cu5B_ not modelled 18.6 8 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 44 d1a6db2 not modelled 18.3 16 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 45 d1xvla1 not modelled 18.2 10 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 46 c2z59A_ not modelled 17.7 27 PDB header:protein transport Chain: A: PDB Molecule:protein adrm1; PDBTitle: complex structures of mouse rpn13 (22-130aa) and ubiquitin 47 c3o1lB_ not modelled 16.9 11 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 48 c2r2yA_ not modelled 16.8 27 PDB header:protein binding Chain: A: PDB Molecule:protein adrm1; PDBTitle: crystal structure of the proteasomal rpn13 pru-domain 49 c1ohhH_ not modelled 16.8 29 PDB header:synthase Chain: H: PDB Molecule:atpase inhibitor, mitochondrial; PDBTitle: bovine mitochondrial f1-atpase complexed with the inhibitor2 protein if1 50 d1q7ea_ not modelled 16.5 17 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 51 c3rhfB_ not modelled 16.3 16 PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1 52 c3n0vD_ not modelled 16.1 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 53 c1fmtA_ not modelled 15.8 19 PDB header:formyltransferase Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase; PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli 54 d1assa_ not modelled 15.7 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 55 d1toaa_ not modelled 15.1 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 56 c1toaA_ not modelled 15.1 15 PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum 57 c2xdqA_ not modelled 14.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 58 c1zghA_ not modelled 13.5 27 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from clostridium thermocellum 59 c3dapB_ not modelled 13.1 9 PDB header:oxidoreductase Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase; PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline 60 c1xeaD_ not modelled 12.9 16 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae 61 d1s3ia2 not modelled 12.8 13 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 62 c2kr0A_ not modelled 12.6 27 PDB header:protein binding Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1; PDBTitle: a proteasome protein 63 c2yfqA_ not modelled 12.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus 64 c1e0mA_ not modelled 12.2 20 PDB header:de novo protein Chain: A: PDB Molecule:wwprototype; PDBTitle: prototype ww domain 65 c2dc1A_ not modelled 12.2 12 PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate dehydrogenase; PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus 66 d2a9pa1 not modelled 12.1 18 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 67 c3czqA_ not modelled 11.9 12 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from2 sinorhizobium meliloti 68 d1ccwa_ not modelled 11.7 19 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 69 d1hwxa1 not modelled 11.6 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 70 c2v7qJ_ not modelled 11.2 21 PDB header:hydrolase Chain: J: PDB Molecule:atpase inhibitor; PDBTitle: the structure of f1-atpase inhibited by i1-60his, a2 monomeric form of the inhibitor protein, if1. 71 d1k9ra_ not modelled 10.8 15 Fold:WW domain-like Superfamily:WW domain Family:WW domain 72 c2ayxA_ not modelled 10.4 6 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 73 d1tk7a2 not modelled 10.2 10 Fold:WW domain-like Superfamily:WW domain Family:WW domain 74 c3jvvA_ not modelled 9.8 13 PDB header:atp binding protein Chain: A: PDB Molecule:twitching mobility protein; PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp 75 c2yscA_ not modelled 9.6 11 PDB header:protein binding Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3 76 d1x74a1 not modelled 9.6 15 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 77 c3aerB_ not modelled 9.2 20 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 78 d1f06a1 not modelled 8.9 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 79 c2djyA_ not modelled 8.8 15 PDB header:ligase/signaling protein Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2; PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex 80 d1xk7a1 not modelled 8.5 16 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 81 c2ysgA_ not modelled 8.5 10 PDB header:protein binding Chain: A: PDB Molecule:syntaxin-binding protein 4; PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4 82 c2l4jA_ not modelled 8.4 5 PDB header:transcription Chain: A: PDB Molecule:yes-associated protein 2 (yap2); PDBTitle: yap ww2 83 d2cyja1 not modelled 8.4 11 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 84 c2kykA_ not modelled 8.3 15 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog; PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif 85 d1i5hw_ not modelled 8.3 10 Fold:WW domain-like Superfamily:WW domain Family:WW domain 86 c3lo3E_ not modelled 8.3 12 PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h. 87 c2ixaA_ not modelled 8.1 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 88 d1ihna_ not modelled 8.1 18 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 89 d1fmta2 not modelled 8.1 15 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 90 c1yiuA_ not modelled 7.8 25 PDB header:ligase Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase; PDBTitle: itch e3 ubiquitin ligase ww3 domain 91 d1xeaa1 not modelled 7.5 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 92 c1wr7A_ not modelled 7.5 20 PDB header:ligase Chain: A: PDB Molecule:nedd4-2; PDBTitle: solution structure of the third ww domain of nedd4-2 93 c2kq0A_ not modelled 7.5 15 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4; PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea 94 d1y5ia2 not modelled 7.5 11 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3 95 c2gm2A_ not modelled 7.4 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 96 d2q4qa1 not modelled 6.9 9 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 97 d2f21a1 not modelled 6.8 20 Fold:WW domain-like Superfamily:WW domain Family:WW domain 98 d2itka1 not modelled 6.7 19 Fold:WW domain-like Superfamily:WW domain Family:WW domain 99 d1edza2 not modelled 6.6 14 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0