Phyre 2 alignment of P19768 with c2gm4B_

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Job Description | P19768
Confidence | 89.86% | Date | Thu Jan 5 11:37:32 GMT 2012
Rank | 65 | Aligned Residues | 53
% Identity | 9% | Template | c2gm4B_
PDB info | PDB header:recombination, dna | Chain: B: PDB Molecule:transposon gamma-delta resolvase; | PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
Resolution | 3.50 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | E | K | G | L | I | P | K | P | K | G | V | S | A | D | P | E | L | R | I | K | V | V | K | A | V | I | E | Q | H | M | S | L | N | Q | A | A | A | H | F | M | L | A | G | S | G | S | V | A | R | W | L | K | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | R | Q | E | A | M | A | K | G | V | V | F | G | R | K | R | K | I | D | R | D | A | V | L | N | M | W | Q | Q | G | L | G | A | S | H | I | S | K | T | M | N | I | . | A | R | S | T | V | Y | K | V | I | N | E
Template Known Secondary structure |  |  |  |  |  |  |  | T | T | T |  |  |  | S | S |  |  |  | S |  |  |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  | S | S | S | . |  |  |  |  |  |  |  |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 |  | . | . | . | . | . | . | . | . | . | 180 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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