Phyre 2 Results for P0ADK0

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Email | l.a.kelley@imperial.ac.uk
Description | P0ADK0
Date | Thu Jan 5 11:21:12 GMT 2012
Unique Job ID | 3a110f580723d51b

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2c8sa1
Top template information
Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
Confidence and coverage
Confidence: | 60.6% | Coverage: | 17%
39 residues ( 17% of your sequence) have been modelled with 60.6% confidence by the single highest scoring template.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | T | G | K | S | C | S | R | W | F | A | P | L | A | A | L | L | M | V | V | S | L | S | G | C | F | D | K | E | G | D | Q | R | K | A | F | I | D | F | L | Q | N | T | V | M | R | S | G | E | R | L | P | T | L | T | A | D | Q | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | K | Q | F | G | P | F | V | S | D | Y | A | I | L | Y | G | Y | S | Q | Q | V | N | Q | A | M | D | S | G | L | R | P | V | V | D | S | V | N | A | I | R | V | P | Q | D | Y | V | T | Q | S | G | P | L | R | E | M | N | G | S | L | G | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | A | Q | Q | L | Q | N | A | K | L | Q | A | D | A | A | H | S | A | L | K | Q | S | D | D | L | K | P | V | F | D | Q | A | F | T | K | V | V | T | T | P | A | D | A | L | Q | P | L | I | P | A | A | Q | T | F | T | Q | Q | L | V | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | .
Sequence |  | V | G | D | Y | I | A | Q | Q | G | T | Q | V | S | F | V | A | N | G | I | Q | F | P | T | S | Q | Q | A | S | E | Y | N | K | L | I | A | P | L | P | A | Q | H | Q | A | F | N | Q | A | W | T | T | A | V | T | A | T | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2c8sa1 |

### PDB 2c8s chain A domain 1

Region: 31 - 69
Aligned: 39
Modelled: 39
Confidence: 60.6%
Identity: 18%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2
2 |
| d1fc2c_ |

### PDB 1fc2 chain C

Region: 30 - 63
Aligned: 25
Modelled: 34
Confidence: 59.7%
Identity: 36%
Fold: immunoglobulin/albumin-binding domain-like
Superfamily: Bacterial immunoglobulin/albumin-binding domains
Family: Immunoglobulin-binding protein A modules

Phyre2
3 |
| d1lp1b_ |

### PDB 1lp1 chain B

Region: 31 - 63
Aligned: 24
Modelled: 33
Confidence: 59.3%
Identity: 38%
Fold: immunoglobulin/albumin-binding domain-like
Superfamily: Bacterial immunoglobulin/albumin-binding domains
Family: Immunoglobulin-binding protein A modules

Phyre2
4 |
| c2d0wA_ |

### PDB 2d0w chain A

Region: 31 - 66
Aligned: 36
Modelled: 36
Confidence: 49.7%
Identity: 25%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome cl;
PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans

Phyre2
5 |
| d1deeg_ |

### PDB 1dee chain G

Region: 32 - 63
Aligned: 23
Modelled: 32
Confidence: 47.0%
Identity: 43%
Fold: immunoglobulin/albumin-binding domain-like
Superfamily: Bacterial immunoglobulin/albumin-binding domains
Family: Immunoglobulin-binding protein A modules

Phyre2
6 |
| c1zdbA_ |

### PDB 1zdb chain A

Region: 31 - 63
Aligned: 24
Modelled: 33
Confidence: 47.0%
Identity: 25%
PDB header:igg binding domain
Chain: A: PDB Molecule:mini protein a domain, z38;
PDBTitle: phage-selected mini protein a domain, z38, nmr, minimized2 mean structure

Phyre2
7 |
| d2jwda1 |

### PDB 2jwd chain A domain 1

Region: 27 - 63
Aligned: 28
Modelled: 37
Confidence: 46.5%
Identity: 32%
Fold: immunoglobulin/albumin-binding domain-like
Superfamily: Bacterial immunoglobulin/albumin-binding domains
Family: Immunoglobulin-binding protein A modules

Phyre2
8 |
| d2gc4d1 |

### PDB 2gc4 chain D domain 1

Region: 31 - 66
Aligned: 36
Modelled: 36
Confidence: 42.3%
Identity: 22%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2
9 |
| d1lp1a_ |

### PDB 1lp1 chain A

Region: 31 - 63
Aligned: 24
Modelled: 33
Confidence: 42.3%
Identity: 33%
Fold: immunoglobulin/albumin-binding domain-like
Superfamily: Bacterial immunoglobulin/albumin-binding domains
Family: Immunoglobulin-binding protein A modules

Phyre2
10 |
| c2g38A_ |

### PDB 2g38 chain A

Region: 63 - 87
Aligned: 25
Modelled: 25
Confidence: 38.3%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis

Phyre2
11 |
| d2g38a1 |

### PDB 2g38 chain A domain 1

Region: 63 - 87
Aligned: 25
Modelled: 25
Confidence: 38.3%
Identity: 16%
Fold: Ferritin-like
Superfamily: PE/PPE dimer-like
Family: PE

Phyre2
12 |
| c3fggA_ |

### PDB 3fgg chain A

Region: 69 - 152
Aligned: 81
Modelled: 81
Confidence: 36.6%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bce2196;
PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus

Phyre2
13 |
| c3lueP_ |

### PDB 3lue chain P

Region: 30 - 58
Aligned: 29
Modelled: 29
Confidence: 31.9%
Identity: 24%
PDB header:structural protein
Chain: P: PDB Molecule:alpha-actinin-3;
PDBTitle: model of alpha-actinin ch1 bound to f-actin

Phyre2
14 |
| d1edla_ |

### PDB 1edl chain A

Region: 30 - 63
Aligned: 25
Modelled: 34
Confidence: 24.8%
Identity: 44%
Fold: immunoglobulin/albumin-binding domain-like
Superfamily: Bacterial immunoglobulin/albumin-binding domains
Family: Immunoglobulin-binding protein A modules

Phyre2
15 |
| d2iy5a1 |

### PDB 2iy5 chain A domain 1

Region: 38 - 68
Aligned: 31
Modelled: 31
Confidence: 20.3%
Identity: 13%
Fold: Long alpha-hairpin
Superfamily: tRNA-binding arm
Family: Phenylalanyl-tRNA synthetase (PheRS)

Phyre2
16 |
| d1ojqa_ |

### PDB 1ojq chain A

Region: 54 - 76
Aligned: 23
Modelled: 23
Confidence: 18.0%
Identity: 4%
Fold: ADP-ribosylation
Superfamily: ADP-ribosylation
Family: ADP-ribosylating toxins

Phyre2
17 |
| c3uc2A_ |

### PDB 3uc2 chain A

Region: 56 - 70
Aligned: 15
Modelled: 15
Confidence: 15.8%
Identity: 27%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein with immunoglobulin-like fold;
PDBTitle: crystal structure of a hypothetical protein with immunoglobulin-like2 fold (pa0388) from pseudomonas aeruginosa pao1 at 2.09 a resolution

Phyre2
18 |
| c2xglB_ |

### PDB 2xgl chain B

Region: 26 - 47
Aligned: 21
Modelled: 22
Confidence: 14.2%
Identity: 33%
PDB header:antibiotic
Chain: B: PDB Molecule:colicin-m immunity protein;
PDBTitle: the x-ray structure of the escherichia coli colicin m immunity2 protein demonstrates the presence of a disulphide bridge, which is3 functionally essential

Phyre2
19 |
| c1hynQ_ |

### PDB 1hyn chain Q

Region: 14 - 61
Aligned: 48
Modelled: 48
Confidence: 13.9%
Identity: 27%
PDB header:membrane protein
Chain: Q: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein

Phyre2
20 |
| c1g5gA_ |

### PDB 1g5g chain A

Region: 71 - 132
Aligned: 50
Modelled: 54
Confidence: 13.8%
Identity: 24%
PDB header:viral protein
Chain: A: PDB Molecule:fusion protein;
PDBTitle: fragment of fusion protein from newcastle disease virus

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
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38 |
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40 |
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42 |
43 |
44 |
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56 |
57 |
58 |
59 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2c8sa1 |
|  | 60.6 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
2 | d1fc2c_ |
|  | 59.7 | 36 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules
3 | d1lp1b_ |
|  | 59.3 | 38 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules
4 | c2d0wA_ |
|  | 49.7 | 25 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome cl; PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans
5 | d1deeg_ |
|  | 47.0 | 43 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules
6 | c1zdbA_ |
|  | 47.0 | 25 | PDB header:igg binding domain Chain: A: PDB Molecule:mini protein a domain, z38; PDBTitle: phage-selected mini protein a domain, z38, nmr, minimized2 mean structure
7 | d2jwda1 |
|  | 46.5 | 32 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules
8 | d2gc4d1 |
|  | 42.3 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
9 | d1lp1a_ |
|  | 42.3 | 33 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules
10 | c2g38A_ |
|  | 38.3 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pe family protein; PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
11 | d2g38a1 |
|  | 38.3 | 16 | Fold:Ferritin-like Superfamily:PE/PPE dimer-like Family:PE
12 | c3fggA_ |
|  | 36.6 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bce2196; PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus
13 | c3lueP_ |
|  | 31.9 | 24 | PDB header:structural protein Chain: P: PDB Molecule:alpha-actinin-3; PDBTitle: model of alpha-actinin ch1 bound to f-actin
14 | d1edla_ |
|  | 24.8 | 44 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules
15 | d2iy5a1 |
|  | 20.3 | 13 | Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Phenylalanyl-tRNA synthetase (PheRS)
16 | d1ojqa_ |
|  | 18.0 | 4 | Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:ADP-ribosylating toxins
17 | c3uc2A_ |
|  | 15.8 | 27 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein with immunoglobulin-like fold; PDBTitle: crystal structure of a hypothetical protein with immunoglobulin-like2 fold (pa0388) from pseudomonas aeruginosa pao1 at 2.09 a resolution
18 | c2xglB_ |
|  | 14.2 | 33 | PDB header:antibiotic Chain: B: PDB Molecule:colicin-m immunity protein; PDBTitle: the x-ray structure of the escherichia coli colicin m immunity2 protein demonstrates the presence of a disulphide bridge, which is3 functionally essential
19 | c1hynQ_ |
|  | 13.9 | 27 | PDB header:membrane protein Chain: Q: PDB Molecule:band 3 anion transport protein; PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein
20 | c1g5gA_ |
|  | 13.8 | 24 | PDB header:viral protein Chain: A: PDB Molecule:fusion protein; PDBTitle: fragment of fusion protein from newcastle disease virus
21 | d1r45a_ |
| not modelled | 12.1 | 13 | Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:ADP-ribosylating toxins
22 | d1fqva1 |
| not modelled | 11.8 | 38 | Fold:F-box domain Superfamily:F-box domain Family:F-box domain
23 | c2kv5A_ |
| not modelled | 11.7 | 36 | PDB header:toxin Chain: A: PDB Molecule:putative uncharacterized protein rnai; PDBTitle: solution structure of the par toxin fst in dpc micelles
24 | c2yskA_ |
| not modelled | 10.9 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus
25 | d1qn2a_ |
| not modelled | 10.6 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
26 | d1qhma_ |
| not modelled | 10.4 | 14 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
27 | c2dbhA_ |
| not modelled | 10.3 | 22 | PDB header:signaling protein Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the carboxyl-terminal card-like2 domain in human tnfr-related death receptor-6
28 | d1eiya1 |
| not modelled | 10.3 | 12 | Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Phenylalanyl-tRNA synthetase (PheRS)
29 | d1y9ua_ |
| not modelled | 10.1 | 15 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
30 | c3ermD_ |
| not modelled | 10.0 | 16 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein with unknown function2 from pseudomonas syringae pv. tomato str. dc3000
31 | d4icba_ |
| not modelled | 9.7 | 31 | Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K
32 | c3swyB_ |
| not modelled | 8.8 | 18 | PDB header:transport protein Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3; PDBTitle: cnga3 626-672 containing clz domain
33 | d1j3sa_ |
| not modelled | 8.3 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
34 | c2x7aB_ |
| not modelled | 8.0 | 22 | PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain
35 | c2kwhA_ |
| not modelled | 7.6 | 27 | PDB header:transport protein Chain: A: PDB Molecule:rala-binding protein 1; PDBTitle: ral binding domain of rlip76 (ralbp1)
36 | d1sh5a1 |
| not modelled | 7.6 | 10 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
37 | d1hynp_ |
| not modelled | 7.2 | 24 | Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:Anion transport protein, cytoplasmic domain
38 | d1y4ta_ |
| not modelled | 7.1 | 26 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
39 | c2zykA_ |
| not modelled | 7.0 | 14 | PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin
40 | c3bw8B_ |
| not modelled | 7.0 | 17 | PDB header:transferase Chain: B: PDB Molecule:mono-adp-ribosyltransferase c3; PDBTitle: crystal structure of the clostridium limosum c3 exoenzyme
41 | c3d0wD_ |
| not modelled | 6.9 | 36 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yflh protein; PDBTitle: crystal structure of yflh protein from bacillus subtilis.2 northeast structural genomics consortium target sr326
42 | d1lmsa_ |
| not modelled | 6.8 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
43 | d1ccra_ |
| not modelled | 6.8 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
44 | d1l8ya_ |
| not modelled | 6.7 | 42 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
45 | d1nmla2 |
| not modelled | 6.4 | 28 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
46 | c3gdzA_ |
| not modelled | 6.3 | 18 | PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of arginyl-trna synthetase from klebsiella2 pneumoniae subsp. pneumoniae
47 | d3ctda1 |
| not modelled | 6.2 | 0 | Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:MgsA/YrvN C-terminal domain-like
48 | c2pt1A_ |
| not modelled | 6.0 | 24 | PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: futa1 synechocystis pcc 6803
49 | c3oeoD_ |
| not modelled | 6.0 | 78 | PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy
50 | c1sj8A_ |
| not modelled | 5.9 | 12 | PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789
51 | c1sszA_ |
| not modelled | 5.8 | 33 | PDB header:surface active protein Chain: A: PDB Molecule:pulmonary surfactant-associated protein b; PDBTitle: conformational mapping of mini-b: an n-terminal/c-terminal2 construct of surfactant protein b using 13c-enhanced3 fourier transform infrared (ftir) spectroscopy
52 | d1aoaa1 |
| not modelled | 5.7 | 8 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
53 | c3m97X_ |
| not modelled | 5.7 | 21 | PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans
54 | d1ycca_ |
| not modelled | 5.6 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
55 | c2z6vA_ |
| not modelled | 5.6 | 14 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf9 from2 mycobacterium avium
56 | d1hywa_ |
| not modelled | 5.3 | 36 | Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW
57 | d1cl1a_ |
| not modelled | 5.2 | 35 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
58 | d1hroa_ |
| not modelled | 5.2 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
59 | c2qk1A_ |
| not modelled | 5.2 | 13 | PDB header:protein binding Chain: A: PDB Molecule:protein stu2; PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0