08/01/2012 02:45:22 : INFO  : Run start: Sun Jan  8 02:45:21 GMT 2012
08/01/2012 02:45:26 : INFO  : Initialised job
08/01/2012 02:45:28 : INFO  : Renaming log file 'phyre2_20120108_024521.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/3a110f580723d51b/phyre_20120108_024521.log'
08/01/2012 02:45:29 : INFO  : Initialised job:
Sequence
>batch____
MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQK
KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGV
LAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVM
VGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ

08/01/2012 02:45:30 : INFO  : Checked sequence
08/01/2012 02:45:32 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 02:45:33 : INFO  : PSI-BLAST 3 iterations
08/01/2012 02:46:37 : INFO  : PSI-BLAST 5 iterations
08/01/2012 02:47:23 : INFO  : Finished PSI-BLAST
08/01/2012 02:47:25 : INFO  : Running Buildali to generate a3m file
08/01/2012 02:49:17 : INFO  : Converting to HMM
08/01/2012 02:49:19 : INFO  : Calibrating HMM
08/01/2012 02:49:30 : INFO  : Searching HMM database
08/01/2012 02:53:46 : INFO  : Finished buildali
08/01/2012 02:53:47 : INFO  : Predicting secondary structure
08/01/2012 02:53:55 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 02:53:56 : INFO  : Predicting Disordered regions
08/01/2012 02:54:00 : INFO  : Predicted Disorder (Disopred)
08/01/2012 02:54:02 : INFO  : Running memsat_svm check
08/01/2012 02:56:15 : INFO  : Globular protein
08/01/2012 02:56:16 : INFO  : Predicted Transmembrane (memsat_svm) ID '3a110f580723d51b'
08/01/2012 02:56:18 : INFO  : Initialising fold library search
08/01/2012 02:56:21 : INFO  : Initialised search input
08/01/2012 02:56:23 : INFO  : Building Ensemble models
08/01/2012 02:56:26 : INFO  : Building hh.d2c8sa1.model.1.pdb
08/01/2012 02:56:40 : INFO  : Building hh.d1fc2c_.model.2.pdb
08/01/2012 02:56:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3a110f580723d51b/hh.d1fc2c_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3a110f580723d51b/d1fc2c_.2.pdb
08/01/2012 02:56:54 : INFO  : Building hh.d1lp1b_.model.3.pdb
08/01/2012 02:57:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3a110f580723d51b/hh.d1lp1b_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3a110f580723d51b/d1lp1b_.3.pdb
08/01/2012 02:57:09 : INFO  : Building d2c8sa1.1.pdb
08/01/2012 02:57:23 : INFO  : Building d1fc2c_.2.pdb
08/01/2012 02:57:37 : INFO  : Building d1lp1b_.3.pdb
08/01/2012 02:57:52 : INFO  : Building c2d0wA_.4.pdb
08/01/2012 02:58:07 : INFO  : Building d1deeg_.5.pdb
08/01/2012 02:58:19 : INFO  : Building c1zdbA_.6.pdb
08/01/2012 02:58:34 : INFO  : Building d2jwda1.7.pdb
08/01/2012 02:58:51 : INFO  : Building d2gc4d1.8.pdb
08/01/2012 02:59:07 : INFO  : Building d1lp1a_.9.pdb
08/01/2012 02:59:22 : INFO  : Building c2g38A_.10.pdb
08/01/2012 02:59:36 : INFO  : Building d2g38a1.11.pdb
08/01/2012 02:59:55 : INFO  : Building c3fggA_.12.pdb
08/01/2012 03:00:13 : INFO  : Building c3lueP_.13.pdb
08/01/2012 03:00:33 : INFO  : Building d1edla_.14.pdb
08/01/2012 03:00:53 : INFO  : Building d2iy5a1.15.pdb
08/01/2012 03:01:12 : INFO  : Building d1ojqa_.16.pdb
08/01/2012 03:01:30 : INFO  : Building c3uc2A_.17.pdb
08/01/2012 03:01:48 : INFO  : Building c2xglB_.18.pdb
08/01/2012 03:02:07 : INFO  : Building c1hynQ_.19.pdb
08/01/2012 03:02:25 : INFO  : Building c1g5gA_.20.pdb
08/01/2012 03:03:40 : INFO  : Finished HH model building
08/01/2012 03:03:43 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 03:06:08 : INFO  : html domain output complete ID '3a110f580723d51b'
08/01/2012 03:11:46 : INFO  : Run end  : Sun Jan  8 03:11:45 GMT 2012
