BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (716 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=E... 1475 0.0 UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6... 360 7e-98 UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Lept... 360 9e-98 UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B... 349 2e-94 UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1... 348 6e-94 UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=5... 343 1e-92 UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0... 339 2e-91 UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammapro... 337 1e-90 UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1... 332 3e-89 UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella m... 330 1e-88 UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 330 2e-88 UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteob... 319 3e-85 UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q... 318 4e-85 UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2... 309 3e-82 UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV 307 1e-81 UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteo... 306 2e-81 UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesar... 306 3e-81 UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae... 305 3e-81 UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassifie... 305 3e-81 UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivoran... 300 2e-79 UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 ... 288 6e-76 UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=... 286 2e-75 UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejue... 285 5e-75 UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4... 285 5e-75 UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1W... 266 2e-69 UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB... 247 1e-63 UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168... 223 3e-56 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 221 7e-56 UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3... 214 9e-54 UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis... 213 2e-53 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 211 1e-52 UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 ... 210 1e-52 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 208 7e-52 UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZ... 207 1e-51 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 206 2e-51 UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacteriu... 206 3e-51 UniRef50_UPI0001BC908D ATP-dependent DNA helicase DinG n=1 Tax=P... 203 1e-50 UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteoba... 202 3e-50 UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damag... 199 2e-49 UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 143... 199 3e-49 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 199 3e-49 UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae Rep... 198 5e-49 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 197 1e-48 UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylo... 197 1e-48 UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 ... 196 3e-48 UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9X... 191 6e-47 UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphi... 189 2e-46 UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans D... 188 7e-46 UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC... 187 9e-46 UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterinea... 186 2e-45 UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BA... 186 4e-45 UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 425... 185 4e-45 UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1... 184 1e-44 UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=... 182 5e-44 UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemm... 182 6e-44 UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivo... 181 7e-44 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 181 8e-44 UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteo... 180 2e-43 UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID... 180 2e-43 UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV... 180 2e-43 UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococc... 179 3e-43 UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID... 177 1e-42 UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus... 177 2e-42 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 176 3e-42 UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylo... 176 3e-42 UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V... 176 3e-42 UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 T... 175 6e-42 UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4... 175 6e-42 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 174 8e-42 UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2... 174 1e-41 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 174 1e-41 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 173 2e-41 UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans... 173 2e-41 UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium Re... 173 3e-41 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 172 5e-41 UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix ... 172 5e-41 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 171 7e-41 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 171 9e-41 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 169 4e-40 UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomic... 168 5e-40 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 168 6e-40 UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter no... 167 1e-39 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 166 2e-39 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 165 6e-39 UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B... 164 9e-39 UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio pep... 163 2e-38 UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA 162 5e-38 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 162 6e-38 UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanu... 161 8e-38 UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyra... 159 3e-37 UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus R... 159 3e-37 UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP... 158 6e-37 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 158 7e-37 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 158 7e-37 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 155 4e-36 UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_A... 155 5e-36 UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-ter... 155 6e-36 UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A... 154 8e-36 UniRef50_Q840H8 Putative uncharacterized protein (Fragment) n=2 ... 154 1e-35 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 152 4e-35 UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 Re... 152 6e-35 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 149 4e-34 UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Trep... 149 5e-34 UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3... 148 9e-34 UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquete... 147 1e-33 UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW 145 5e-33 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 144 8e-33 UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus Re... 144 1e-32 UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_... 144 1e-32 UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23... 144 1e-32 UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C09... 141 1e-31 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 140 1e-31 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 138 9e-31 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 137 1e-30 UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1... 135 4e-30 UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus fer... 134 1e-29 UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepI... 130 2e-28 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 126 3e-27 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 119 3e-25 UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus ... 116 3e-24 UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR... 116 3e-24 UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 Rep... 116 4e-24 UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borr... 115 5e-24 UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium Rep... 115 8e-24 UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Synt... 114 1e-23 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 114 1e-23 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 114 1e-23 UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 143... 114 2e-23 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 112 4e-23 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 112 6e-23 UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxida... 111 9e-23 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 111 9e-23 UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium h... 111 1e-22 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 110 1e-22 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 110 2e-22 UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=... 110 2e-22 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 110 3e-22 UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibact... 109 4e-22 UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 1606... 108 6e-22 UniRef50_UPI0001911979 ATP-dependent DNA helicase DinG n=1 Tax=S... 108 8e-22 UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incer... 108 8e-22 UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG 108 8e-22 UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC50... 107 1e-21 UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=C... 107 1e-21 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 106 4e-21 UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax... 105 4e-21 UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6... 105 7e-21 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 105 8e-21 UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_... 103 2e-20 UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_... 103 2e-20 UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL... 103 3e-20 UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrop... 102 4e-20 UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax... 102 5e-20 UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 ... 102 5e-20 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 100 1e-19 UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH 100 1e-19 UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces c... 100 2e-19 UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad... 99 7e-19 UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curviba... 98 1e-18 UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=1... 98 1e-18 UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=B... 97 2e-18 UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Rosebur... 97 3e-18 UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP 96 5e-18 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 96 6e-18 UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_... 94 2e-17 UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured T... 94 2e-17 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 94 2e-17 UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium... 94 2e-17 UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinom... 93 4e-17 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 93 4e-17 UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepI... 92 7e-17 UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2... 92 9e-17 UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Dein... 91 1e-16 UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi... 91 2e-16 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 91 2e-16 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 90 3e-16 UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 T... 88 1e-15 UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. ... 87 3e-15 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 86 3e-15 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 86 3e-15 UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 ... 85 1e-14 UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n... 85 1e-14 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 84 2e-14 UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiph... 83 5e-14 UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostri... 81 1e-13 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 81 1e-13 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 79 4e-13 UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicu... 79 8e-13 UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2... 77 2e-12 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 77 2e-12 UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=... 77 3e-12 UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefac... 76 4e-12 UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium pe... 73 4e-11 UniRef50_C0ABZ5 Helicase C2 n=2 Tax=Verrucomicrobia RepID=C0ABZ5... 73 4e-11 UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2N... 71 2e-10 UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependen... 70 3e-10 UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C... 70 4e-10 UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7... 69 5e-10 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 69 6e-10 UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK2... 69 7e-10 UniRef50_UPI000186CB9B regulator of telomere elongation helicase... 68 1e-09 UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillu... 67 2e-09 UniRef50_B4U7P2 Helicase c2 n=1 Tax=Hydrogenobaculum sp. Y04AAS1... 67 2e-09 UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=... 67 3e-09 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 67 3e-09 UniRef50_B5ZKV6 Helicase c2 n=11 Tax=Rhodospirillales RepID=B5ZK... 65 7e-09 UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus ... 65 1e-08 UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostri... 65 1e-08 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 65 1e-08 UniRef50_UPI0001699456 Helicase c2 n=1 Tax=Endoriftia persephone... 64 2e-08 UniRef50_Q9Z9N9 Unknown (Fragment) n=1 Tax=Bacillus halodurans R... 64 2e-08 UniRef50_A6UVN5 Helicase domain protein n=1 Tax=Methanococcus ae... 64 2e-08 UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_A... 64 3e-08 UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhod... 63 5e-08 UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum ce... 62 7e-08 UniRef50_UPI0001850E3B bifunctional ATP-dependent DNA helicase/D... 62 1e-07 UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environ... 62 1e-07 UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococc... 61 2e-07 UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=... 60 2e-07 UniRef50_D2MHS9 Helicase c2 (Fragment) n=1 Tax=Candidatus Poriba... 60 3e-07 UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus ... 59 8e-07 UniRef50_C4M6T8 DNA repair helicase, putative n=2 Tax=Entamoeba ... 58 1e-06 UniRef50_C8X8L4 Helicase c2 n=1 Tax=Nakamurella multipartita DSM... 57 3e-06 UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteri... 55 7e-06 UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1... 53 4e-05 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 53 4e-05 UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei Re... 51 1e-04 UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=... 51 1e-04 UniRef50_C4XCX5 Putative uncharacterized protein n=2 Tax=Klebsie... 51 2e-04 UniRef50_B5IHH7 DEAD_2 domain protein n=2 Tax=Aciduliprofundum b... 50 2e-04 UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lact... 49 5e-04 UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium t... 49 7e-04 UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C... 49 0.001 UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1... 48 0.001 UniRef50_A0CAB5 Chromosome undetermined scaffold_161, whole geno... 48 0.001 UniRef50_Q6MR44 Similar to ATP dependent helicase n=1 Tax=Bdello... 47 0.002 UniRef50_Q4FXD6 Helicase, putative n=5 Tax=Trypanosomatidae RepI... 47 0.003 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 47 0.003 UniRef50_C6NY64 DinG family ATP-dependent helicase YoaA n=1 Tax=... 46 0.004 UniRef50_D1PKE8 ATP-dependent helicase DinG n=3 Tax=Bacteria Rep... 46 0.006 UniRef50_Q9BX63 Fanconi anemia group J protein n=28 Tax=Euteleos... 45 0.007 UniRef50_D1PKE7 Putative helicase c2 n=1 Tax=Subdoligranulum var... 45 0.012 UniRef50_UPI0001796C3E PREDICTED: similar to BRCA1 interacting p... 45 0.014 UniRef50_Q12VQ5 DEAD/DEAH box helicase domain protein n=2 Tax=Eu... 44 0.015 UniRef50_D0NXC2 Putative uncharacterized protein n=1 Tax=Phytoph... 44 0.016 UniRef50_B3GAM9 AMDV4_8 n=1 Tax=uncultured virus RepID=B3GAM9_9VIRU 44 0.019 UniRef50_Q17978 Mutator protein 14 n=4 Tax=Caenorhabditis RepID=... 44 0.025 UniRef50_D1YWT2 DNA repair helicase n=1 Tax=Methanocella paludic... 44 0.028 UniRef50_B7S0W4 Putative uncharacterized protein n=1 Tax=marine ... 43 0.036 UniRef50_A0DE87 Chromosome undetermined scaffold_47, whole genom... 43 0.036 >UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=Enterobacteriaceae RepID=DING_ECOLI Length = 716 Score = 1475 bits (3818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 716/716 (100%), Positives = 716/716 (100%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK Sbjct: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC Sbjct: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID Sbjct: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP Sbjct: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI Sbjct: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR Sbjct: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA Sbjct: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK Sbjct: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL Sbjct: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 Query: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL Sbjct: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS Sbjct: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR Sbjct: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 >UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6VX61_MARMS Length = 707 Score = 360 bits (925), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 255/717 (35%), Positives = 370/717 (51%), Gaps = 43/717 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA----GEEG-----RHLA-I 52 L+ LK QI Y+A + PRA QRQMI +A+TL G EG +H+A I Sbjct: 2 LSDELKKQIQLAYRASLD-AKSHKPRAGQRQMIGAIARTLGNIKQGSEGERLEEKHVAVI 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKTLSY + I IA+ L++STA VALQ+QI K+LP LL+ K+T Sbjct: 61 EAGTGTGKTLSYCLAAIPIAKARGLKLIISTATVALQEQILHKELPDLLEHTELTFKYTL 120 Query: 112 AFGRGRYVCPRNLTA-LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 A GRGRY+C NL L+S E D+ A L ++ ++ ++ L WDG Sbjct: 121 AKGRGRYLCLNNLEGFLSSEEQAMDDMFAGLFEQHLHSDDINTVLYQEMDTALQKGDWDG 180 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA- 229 +D+ + D WRRL+TD C NRNC Y CPFF AR EI+ A+V+VANH LV+A Sbjct: 181 DKDNWAGIVRDQDWRRLTTDHQQCTNRNCANYSACPFFKARAEIEVADVIVANHDLVLAD 240 Query: 230 -AMESEAVLPDPKNLLLVLDEGHHLPDVA----RDALEMSAEITAPWYRLQLDLFTKLVA 284 ++ A+L PK + + DEGHHLPD A R + + IT W R L Sbjct: 241 LSLGGGAILTPPKETIYIFDEGHHLPDKAIGHFRHEVRLQQSIT--WLRQLEKNLVNLKQ 298 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPA----GQEAEHRFAMGE 340 + L IP+++ + + I L Y+ + +HRF G+ Sbjct: 299 ELTDDVSVTGQLLLKIPQQIQS----IVNFIQYAQQGLAPYIQGLGLDQENNQHRFEFGQ 354 Query: 341 LPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQ-----MNRALGM 395 +PDE+ ++ L + L E + D +KT ++ + + + + LG Sbjct: 355 IPDELRQLAYSLQTSYQKLFNNIE-SIQDECKKTKQNEGMGVTPETAETWQPILGVILGR 413 Query: 396 FEAQSKLWRLASLAQSSG-APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPH 454 E LW L S P +W + + + I ++ L + LW Sbjct: 414 LEQCIGLWCLYSTVDDQNFPPNARWLVLSGQGMEQDIELGGSPILAANTLRQQLWDKCFG 473 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 +VTSATL +LN F R SG+ ++ ++ + SPFN E G +V+P M EP + Sbjct: 474 AVVTSATLTALNQFHRFNMRSGVPRES--EYLRVISPFNFQENGLLVVPDMEHEP--NRV 529 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLV 573 EQH AE+ + K V ++K G LVLF+S R M+ V+ L+ +LL+QG+Q + ++ Sbjct: 530 EQHTAEIVTYLDKHVNTEK--GSLVLFSSRRQMEEVAQSVSVGLQEILLMQGEQSKRVIL 587 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 + H+ R+ G+ S+L+GL SFAEG+DL GD L+ V+I KI F D PV T EW++ Sbjct: 588 DSHKSRIDEGKGSLLLGLASFAEGVDLPGDYLTCVYIAKIPFAVPDDPVEATLAEWIQKR 647 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 PF ++P AS L+Q GRL+RS GE+ I DKRL TK YG +L+++LP + Sbjct: 648 GGNPFMEITIPDASLRLVQATGRLLRSEKDSGEIHILDKRLRTKRYGSQLINSLPPY 704 >UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EQ06_9BACT Length = 738 Score = 360 bits (925), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 258/733 (35%), Positives = 369/733 (50%), Gaps = 68/733 (9%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA--------GEEGRHLA-IEAPTGV 58 K +I L +P F R QR MIA+VA+T + ++G++L+ I+ PTG Sbjct: 23 KQEIRVLLDRLSRTLPGFAARPGQRAMIAEVARTFSRCREEGEPSKDGQNLSVIQGPTGT 82 Query: 59 GKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLK-FTAAFGRGR 117 GKT++YL+ GI +AR +KTL+VSTA V+LQ+Q+ +KD+P L +++ + + A GRGR Sbjct: 83 GKTMAYLLAGIVLARSRKKTLLVSTATVSLQEQLVTKDIPQLARVLDNPPVYELAKGRGR 142 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y+C RNL +L + AF P + E +L+GD WDG RDH + Sbjct: 143 YLCERNLLSLTDLQAGN----AFWKH---PPSASELDLLDRLRGDFPD-SWDGDRDHLPV 194 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA 235 ++ D LW + SC + C Y CPFF+ + A++VVANH LV++ + Sbjct: 195 SVPDSLWSLIQNQGTSCTGKRCPLYSRCPFFLKKEAFSRADIVVANHDLVLSDLVLGGGI 254 Query: 236 VLPDPKNLLLVLDEGHHLPDVA----RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 +LP P+ LLV DE HHLP + R++L++ E APW L ++ A + R Sbjct: 255 LLPSPEKSLLVFDEAHHLPGKSLSHFRESLDL--EGLAPWIERIPGLLERISAFFDVRER 312 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYM---PAGQ---EAEH----------- 334 KT+ A E L + +L L + PAG E E Sbjct: 313 DKTV---------QAQAEALTNSLMTLGTWLEEHWEGKPAGSFSSETEQDGANGIFRGSR 363 Query: 335 -----RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQM 389 RF G+ PD +++ + A +L +L + L+E T D VR +R Sbjct: 364 EQSLWRFPGGKFPDAMIDPSRIGASAARVLAERLQLERDKLAEATTGSD-VRRNRERDAF 422 Query: 390 NRALGM-FEAQSKLWRLASLAQS----SGAPVTKWATREEREGQLHLWFHCVGIRVSDQL 444 +G+ E RL SL + AP +WAT + G + + L Sbjct: 423 FLDVGVHLEKTLDAVRLLSLYEKVDPEGKAPFARWATMWKESGTFSHRLEASPVWPATLL 482 Query: 445 ERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR 504 E +LWR + +TSATL SL SF GL G F++LDSPF QG + +P Sbjct: 483 EEVLWRRVSACCLTSATLMSLGSFKSFSSRCGLSMLTGVSFLSLDSPFPLDRQGVLSLPV 542 Query: 505 MRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLV 563 MR +P+ + E H E+ + G LVLF+S R M+ ++ + + +LV Sbjct: 543 MRSDPT--DFESHTREIVESLPAVLSPTG--GALVLFSSRRQMEAVRKGLSPEWQNRVLV 598 Query: 564 QGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 QG++ R ++ LH +RV GE SVL GL SF+EGLDLKGDL + V I KI FP PV Sbjct: 599 QGERSRKDILALHEQRVRAGEASVLFGLSSFSEGLDLKGDLCTHVVIAKIPFPVPTEPVE 658 Query: 624 ITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 T EW++S PF +LP A L+Q GRLIRS G V I+DKRLL KNYG L Sbjct: 659 ETLSEWIRSRGGDPFREIALPEAGLRLVQAAGRLIRSETDRGIVTIFDKRLLEKNYGVHL 718 Query: 684 LDALPVFPIEQPE 696 L +LP F +E+P+ Sbjct: 719 LRSLPPFRLERPD 731 >UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B8CRB2_SHEPW Length = 701 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 238/707 (33%), Positives = 368/707 (52%), Gaps = 42/707 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L+A +K QI YK + +P+F R Q ++A+++KTLAGE + R + +EA TG+G Sbjct: 13 LSADVKTQIRTIYKGIASSLPNFRSRREQNYIVAEISKTLAGEYDKQRRIIVVEAGTGIG 72 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPL-LKKIIPDLKFTAAFGRGRY 118 K+L+Y++ I +A +K + ++TA VALQ+Q+ KDLP L+ D F GR RY Sbjct: 73 KSLAYILGTIPLALASKKKVCIATATVALQEQLLHKDLPFFLQHSGLDFTFGLVKGRQRY 132 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYK---WDGLRDHT 175 VC L L + + Q + ++ +Q + L+G L +K W+G RD Sbjct: 133 VCLSKLEMLVGPDNSSQMAMW--------QSKPDQSQVDMLEGLLKDFKESRWNGERDTL 184 Query: 176 DIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--S 233 + D LW++++ DK SC ++ +R CPF AR +I +V++ANH+L+ A +E Sbjct: 185 TKPLPDHLWQQIACDKHSC-HKQLASHRNCPFHKAREDIDTWDVLIANHSLLFADLELGG 243 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVATCMEQFR 291 +LPDP++L V+DE HHLP VARD A I + W L+ TK + Q + Sbjct: 244 GVILPDPEDLYYVIDEAHHLPIVARDFSSAQATIRGASDW----LEKLTKTTSKLQNQIK 299 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAM--GELPDEVLEIC 349 I +A + + H ++ L+ + + + E+RF G+LP +L + Sbjct: 300 SNYI--IAPAQAMLDHIGDISGLLNQVAHFCDAQAKQFDNPENRFRFEHGKLPPALLILA 357 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR--LHRLILQMNRALGMFEAQSKLWRL-A 406 + LA + + L L+E DI + L+ + L E KLWR+ A Sbjct: 358 ENLATASNVALKQFNKMLALLNEAIKDGDIPKHLSEALLSETGFMLQRIENLQKLWRMMA 417 Query: 407 SLAQSSGAPVTKWATREEREG-QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL 465 GAP+ +W E+ G Q F I V LE LLW +++ SATLR+L Sbjct: 418 KQDNPKGAPMARWI--EQLTGKQSDYLFSASPIEVGFMLENLLWDKAAGVVLCSATLRAL 475 Query: 466 NSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA-EMAAF 524 N+F+ GL G R++ALDSPF+ + + +P+M EP+ DN +A ++ A Sbjct: 476 NNFNHFTHQVGLSINDGSRYLALDSPFDFEQNATLFLPQMDTEPTHDNYTDELAKQIIAL 535 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANG 583 ++ S LVLFAS M++ D V + ++ LL+QG PR +++ H+ + Sbjct: 536 VEDEMAS------LVLFASYWQMEKVADLVENKIKTNLLIQGTLPRQEILKRHKALCDDT 589 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 + S++ G SF+EGLDL GD L+ + I K+ F SPV E++K PF ++ Sbjct: 590 KPSIIFGTGSFSEGLDLPGDYLTNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTI 649 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 P AS L+Q GRL+R +G + I D+RL+TK YGK LLDALP F Sbjct: 650 PDASRKLVQSCGRLLRKEQDYGRISILDRRLVTKRYGKSLLDALPPF 696 >UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1QX31_CHRSD Length = 721 Score = 348 bits (892), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 256/724 (35%), Positives = 375/724 (51%), Gaps = 54/724 (7%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE----GRHLA------ 51 L + LKA I Y+ + + + + PR QR MIA++A+TL G E GR L+ Sbjct: 8 GLDSELKATIQTAYRRVLDSL-ELTPRYGQRLMIAEIARTLGGIESDDAGRRLSNEHVCV 66 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 +EA TG GKTL+YL+ + IA+ K LV+STA VALQ+Q+ DLP LK D +F Sbjct: 67 LEAGTGTGKTLAYLLAALPIAQARGKRLVISTATVALQEQVLHHDLPALKAHSGLDFEFA 126 Query: 111 AAFGRGRYVCPRNLT-ALASTE--PTQQDLLAFLDDELTPNNQEEQKRCAKLKGD-LDTY 166 A GRGRY+C L AL E PT L+ ++ ++ + ++ + A+ D Sbjct: 127 LAKGRGRYLCVARLDQALEGGEDNPT----LSLFEEAMSSGDGDDFQALAQEMADAYSAG 182 Query: 167 KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHAL 226 +W+G RD IDD WRRL+ D C NR C ++ C FF ARR + +A+V+VANH L Sbjct: 183 RWEGDRDSWPTGIDDADWRRLTIDHRQCTNRRCGHFGACAFFRARRGLDQADVIVANHDL 242 Query: 227 VMA--AMESEAVLPDPKNLLLVLDEGHHLPDVARDAL--EMSAEITAPWYRLQLDLFTKL 282 V+A ++ VLP PK+ + V DEGHHLPD A D + T W R +L Sbjct: 243 VLADLSLGGGLVLPSPKDCIYVFDEGHHLPDKALDHFYHRLPVNGTLRWLRTLKKSLAEL 302 Query: 283 VATCMEQFRPKTIPPLA-IPERLNAHCEELYELIASLNNIL----NLYMPAGQEAEHRFA 337 Q P LA +PE + A L E A + + L A HRF Sbjct: 303 NTALGVQ--PTLARLLATLPEAIAALEPRLGEAFAMGHRLAEREEGLPDDATDAVHHRFP 360 Query: 338 MGELPDEVLEICQRL----AKLTEMLRGLAELFLNDLSEKTGSHDIVR------LHRLIL 387 MG +P+ + E Q + A+L+ L +A++ L + + + R L + L Sbjct: 361 MGRVPEALSEQAQSMVTAFAELSRTLESMADILRESLDPEKAT-GLPREQAESWLPLVAL 419 Query: 388 QMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERL 447 RAL EA + +A+ + G P +W T E G L F + ++ L R Sbjct: 420 LHGRAL---EAHALWQAMATPDPAEGIPQARWLTFERIAGDAELTFSASPVSAAETLARH 476 Query: 448 LWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV 507 LW + +VTSATL +LN F RLQE +GL + R+ L SPF++ + + +P V Sbjct: 477 LWGTCHGAVVTSATLTALNRFERLQERAGLANRY--RYQRLPSPFDYS-RAVLSVPPEAV 533 Query: 508 EPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGD 566 +PS N E H + F + E + +L+LF+S + ++ L+ + + +R ++ Q Sbjct: 534 DPS--NREAHERALIDFTKALDERE---AVLMLFSSRKQLRAVLEALPETVRERVVAQNH 588 Query: 567 QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITE 626 P+ L++ HR RV GE S++ GL SFAEG+DL G+ L+ V I ++ F D PV T Sbjct: 589 LPKRELLQRHRARVDAGEGSIIFGLASFAEGIDLPGEYLTHVVITRLPFSVPDDPVGATL 648 Query: 627 GEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDA 686 EW++S PF S+P AS L+Q GRLIR G + + D+R+LT+ YG+ LLD+ Sbjct: 649 AEWIESRGGNPFMRISVPDASIRLVQACGRLIRKEADQGRITLLDRRVLTRRYGRALLDS 708 Query: 687 LPVF 690 LP F Sbjct: 709 LPPF 712 >UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=50 Tax=Gammaproteobacteria RepID=DING_PHOPR Length = 692 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 250/718 (34%), Positives = 380/718 (52%), Gaps = 64/718 (8%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L + +K+ I Y+ L Q+ +FIPR Q ++A++AKTLAGE + R L EA TG+G Sbjct: 2 LHSQIKSDIKQCYENLGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHRMLVGEAGTGIG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRY 118 K+L+YL+ GI A K L++STA VALQ+Q+ +KDLPL +I P + F A GR RY Sbjct: 62 KSLAYLLGGIPFALFNNKKLLISTATVALQEQLINKDLPLFNRIYPKEFSFILAKGRQRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 C L A +T QQ + +++ ++ + +R K D KWDG RD Sbjct: 122 CCNHKLEACCATNNDQQ--VTLWEEKPKKSDLDLLRRMLKATRD---GKWDGDRDSWPTT 176 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--SEAV 236 I D +W ++ DK SC + +R CPF AR + +A+V++ANHAL+MA +E + Sbjct: 177 IPDRVWPQIMADKHSC-HAGLPQHRSCPFAKAREHLDKADVIIANHALLMADIELGGGVI 235 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 LP+P+ + V+DE HHLP VARD ++ + K AT +E+ +TI Sbjct: 236 LPEPEQTIYVIDEAHHLPKVARDFSSAASSL-------------KGAATWLEKLN-QTIG 281 Query: 297 PLA-------IPERLNAHCEELYELIASLNNILNLYMPAG---QEAEHRFAMGELP---D 343 LA +A E + LI +L + N + G ++ +RF GELP + Sbjct: 282 KLAELAEYKKAARFQDAILENIQHLIPTLRQVAN-NVDVGMFSKDGIYRFEHGELPAWLE 340 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF----EAQ 399 + + C+ +K + L+ L ++ + +SE+ ++I + RL Q G++ E Sbjct: 341 QEAKGCKDASK--KALQSLGKIH-DLISERLKDNEIQQ--RLGEQALAESGVYLQRLENL 395 Query: 400 SKLWRL-ASLAQSSGAPVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 K+W L A + GAP+ +W + + EG + + V +L++LLW I+ Sbjct: 396 EKVWALMAQPKKDKGAPLARWIEKNPDNEGDYII--QVSPLEVGYRLDQLLWSRAAGAIL 453 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQ 516 SATLR+LN F+ G+ E RF+AL SPF++ ++VIP + +EP D + Sbjct: 454 VSATLRALNQFTYFCRQVGIYEMDSTRFLALASPFDYQNNARLVIPALSLEPQADKFTDL 513 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYRL 572 I + + + S LVLF+S M + D + L + LLVQG++ R+ Sbjct: 514 LIKTLPEYLEGETAS------LVLFSSYWQMNKVADELRPLAKKNKWELLVQGEESRHIT 567 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 ++ H+ +G+ S+L G SF+EGLDL GDLL + I KI F SPV E+++S Sbjct: 568 LKKHKDNCKSGKPSILFGTGSFSEGLDLPGDLLKNLIITKIPFGVPTSPVEEAHAEYIES 627 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 PF S+P AS LIQ VGRLIR G VV+ D+R++ + YGK LLD+LP F Sbjct: 628 CGGNPFMQISVPEASKKLIQSVGRLIRKEDDMGRVVLLDRRIINRRYGKALLDSLPPF 685 >UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0A9Y9_ALHEH Length = 708 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 246/716 (34%), Positives = 357/716 (49%), Gaps = 52/716 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE-EGRHL-AIEAPTGVGK 60 L ++K +I + + + +P F R+ QRQMIA+VA+TLAGE EGR L AIE PTG GK Sbjct: 2 LEESVKQEIREALRQVGQNVPGFRSRSQQRQMIAEVARTLAGECEGRRLLAIEGPTGTGK 61 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRY 118 +L+YL+ GI +AR E + L++STA VALQ+QI +DLP L+ L F+ GR RY Sbjct: 62 SLAYLLAGIPVARAEGRQLIISTATVALQEQIVDRDLPALQAN-SGLTFSYGLIKGRRRY 120 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKG------DLDTYKWDGLR 172 VC RNL L Q + P + + + +L+ DL WDG Sbjct: 121 VCTRNLEQLVGG--AAQGEMDLGGPSAGPAHWPRKPQTGELEHLQALYRDLQAGDWDGDL 178 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--A 230 D D L ++TD+ C R C + +CPF ARR ++E +V+VANH LV+A A Sbjct: 179 DRRPPPAAD-LQGPMTTDRHGCTGRGCPHVSDCPFHRARRGMEEQDVLVANHDLVLADLA 237 Query: 231 MESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCME 288 M +LP P+ + V DE HHL A DA + + A W L+ +L + Sbjct: 238 MGGGVILPPPEQVFYVFDEAHHLAARATDAFRAESPLLASVQW----LERLPRLAGQAIS 293 Query: 289 QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNL--------YMPAGQEAEHRFAMGE 340 +PE H E L + L+ +LN + ++ RF GE Sbjct: 294 ----------LLPEEAGRHLEALERAVNELSAMLNEMHGMIRRDWQRMNRDGVWRFPAGE 343 Query: 341 LPDEVLEICQRL----AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF 396 LP + E+ L A++ + + + F +E+ + V RL ++ A Sbjct: 344 LPAPLGELVPGLRDASAEVEKHYGRIGQAFAKVTAEEGVTPGSV-AERLAPELGEAASRV 402 Query: 397 EAQSKLWRLASLAQSSGAP-VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHI 455 E + WRL + Q S AP V +W T G+ + + L LW Sbjct: 403 EHLADTWRLVAREQPSEAPPVARWIT-ALGSGRPDYLVAASPVSAAAMLRNGLWSRAAGA 461 Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 ++TSATL +L F R++ GL+E G R+++L SPF++ + + +PRM +P + E Sbjct: 462 VLTSATLTALGRFDRMRLACGLEEDDGTRYLSLASPFDYRNRAVLHVPRMASDPR--DPE 519 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVE 574 H E+ +E + G LVLFAS R + + + + + +L Q ++PR L+ Sbjct: 520 AHTGELIRVLPGILEPEG--GALVLFASARQLDAVYEGLPAEWQGRILRQRERPRVELLA 577 Query: 575 LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN 634 H + V GE SV+ GL FAEG+DL GDL V I K+ F DSPV T EWL+S Sbjct: 578 AHARAVEAGEPSVIFGLAGFAEGVDLPGDLCRHVVIAKLPFAVPDSPVEATLAEWLESRG 637 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 R PF ++P A L+Q GRL+RS G V + D+RLLT YG+ LL+ LP F Sbjct: 638 RNPFMDITVPDAGMKLVQACGRLLRSEADSGRVTVLDRRLLTHRYGQALLNGLPPF 693 >UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammaproteobacteria RepID=A5CX48_VESOH Length = 686 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 227/708 (32%), Positives = 376/708 (53%), Gaps = 44/708 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE-EGRH--LAIEAPTGVG 59 L+ LK +I +K L+E + FI R Q +MIA+++KTL+GE + H L +EAPTG+G Sbjct: 2 LSNELKTKIHQSFKNLKENMNGFITRQAQNKMIAEISKTLSGEYKNSHNILCVEAPTGIG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRY 118 KT +YL+ I IA+ +K L++S+ANVALQ+Q++ KD+P ++ D ++T GR RY Sbjct: 62 KTFAYLLGSIHIAKANKKKLIISSANVALQEQLFFKDIPQAQQYCCVDFEYTLIKGRSRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC RNL + L + P + ++ +K+ + T KW+G D Sbjct: 122 VCIRNLINICEDNKNDNPLFESMPLFDKPPEEYPLEQLSKMLYNYSTKKWNGEIDDLIPT 181 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMES-EAVL 237 + +W++++ ++ +C +NC +Y++C FF R++I +A+V+VANH LV+A + + VL Sbjct: 182 TNHSIWQQIACNRFTCTVKNCEFYKDCAFFKTRQKITKADVIVANHDLVLADLSTGNTVL 241 Query: 238 PDPKNLLLVLDEGHHLPDVARD--ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 PD + + DE HHL A +L S E + TK V+ + + + I Sbjct: 242 PDVSKSIFIFDEAHHLNSKALSHFSLTTSTEFIKTSVKQ-----TKEVSETLCKISKQNI 296 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 P + I ++++ + +L +L+ L N+Y+ F G + + + +I + + L Sbjct: 297 PNINI-KQIDNYITDLIQLLEQLKFNENIYL---------FNQGVIDEPIKQISRNILTL 346 Query: 356 TEMLR---GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ--SKLWRLASLAQ 410 E+++ L + F +D +KT + +H I N G E S + +S Q Sbjct: 347 IEIIQTKFTLLKEFWSDYLKKTVINK--SIHGPI---NNMAGQCEQHLLSIIALFSSFLQ 401 Query: 411 ---SSGAPVTKWATRE--EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL 465 + P ++W + + + + +S+ L+ L+W I+TSATL SL Sbjct: 402 IDEPNKIPNSRWIKKSILTTSKRTNYLLNSAQTDISENLDHLIWSKASGAILTSATLTSL 461 Query: 466 NSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 SF RL + GL + ++++ L SPF Q ++I +++ P+ +H E Sbjct: 462 GSFERLNKQLGLL-RNENQYLRLPSPF-MFNQVDLIIAKLKASPT--QVYEHTQETTLQL 517 Query: 526 RKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGE 584 K+++S + G LVLF S + MQ + + L L +QG+ P+ +++ H G+ Sbjct: 518 LKRLDSDE--GSLVLFTSNKQMQIVANLIDKKLNCTLFIQGEYPKKNILKKHINLRKQGK 575 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 S++ GL SF+EG+DLKG+ L+ V I K+ F SP+ T +LKS NR PF SLP Sbjct: 576 GSIIFGLDSFSEGIDLKGNNLTHVIITKLRFSVPTSPIDRTLATYLKSQNRNPFMEISLP 635 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 AS LIQ GRLIR+ G++ I+D RL++K YGK LL+ALP + I Sbjct: 636 DASLKLIQACGRLIRTETDVGKITIFDNRLISKFYGKLLLNALPNYNI 683 >UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTY2_HALHL Length = 711 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 243/710 (34%), Positives = 359/710 (50%), Gaps = 43/710 (6%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTL-AGEEGRHLAIEAPTGVGKTLSYLIPGI 69 IA Y+ +++++P F R Q++MI +VAK A R LAIEAPTG GK+LSYL+ G+ Sbjct: 10 IATAYRRVRDEMPGFREREAQKRMIWEVAKAFDADHPHRLLAIEAPTGTGKSLSYLLGGV 69 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL- 127 +AR LV++TA V LQ+QI +DLP L + ++ T A GRGRY+CPRNL L Sbjct: 70 PVARSRDLPLVIATATVGLQEQILHQDLPKLARYAGIEVDATVAKGRGRYLCPRNLNELV 129 Query: 128 ---ASTEPTQQDLLA--FLDDELTPNNQE--EQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 E Q LA L P + E ++ + LD +W G D + Sbjct: 130 GQSGQAESGAQQALAGEVLGTARWPRPPQPGEPEQLQAMAEALDGERWGGDLDEWADGVA 189 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-----SEA 235 DDL +++ SC R C ++ CP + AR + AEVV+ NH L++A ++ Sbjct: 190 DDLRPMITSTSHSCSGRRCAHFEGCPVYAARDRVARAEVVITNHDLLLADLQLGEEQGGV 249 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCMEQFRPK 293 +LP P+ L V+DEGHHL A SA + A W + T A + + Sbjct: 250 LLPPPEQALYVIDEGHHLAAKAVQRFAASARVQAARTWLEEGEGVATDTAAVLPDDTAGE 309 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH-RFAMGELPDEVLEICQRL 352 PP A +RL E+ + + L A E E RF G+ PD V E+ R+ Sbjct: 310 --PPDAEAQRLQERLSEVAAALQEADTFLQHNYRADAEGERWRFRAGQAPDPVRELAGRV 367 Query: 353 AK----LTEMLRGLAELFLNDLSEKTG-SHDIVR-LHRLILQMNRALGMFEAQSKLWRLA 406 A L E L+ + + L + G + ++ R L RL RA + + W+L Sbjct: 368 ADPARGLHEALQAFTDRVYSALEAQRGDTQELERQLPRLGFLRERAANL----ATTWQLL 423 Query: 407 SLAQSSGAP-VTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 +++G P V +W R+ E +G + + V+ +L R LW ++TSATLR+ Sbjct: 424 GEQEAAGVPPVARWVERQAESDGAVDHRVSVSPVSVAGELARRLWDRCAGAVITSATLRA 483 Query: 465 LNSFSRLQEMSGLKEKAGDRFVA---LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEM 521 L F L+ GL E D ++ L SPF++ + + +P +R +P N E H+AE+ Sbjct: 484 LGRFDHLRSDLGLPED--DALISQGWLPSPFDYS-RSLLHVPALRSDPR--NAEAHLAEV 538 Query: 522 AAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRV 580 + + ++ + LVLF S + M+R + + LR L QG++ R ++E HR+ V Sbjct: 539 CQWLPELLDPYE--AALVLFTSRQRMERVAQALPETLREQLQCQGERSREAMLERHREAV 596 Query: 581 ANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV 640 G+ S+L GL AEG+DL G V I +I F PV+ T GEWL+ R F Sbjct: 597 DAGQGSILFGLAGMAEGVDLPGRYCDHVVIERIPFGVPTEPVIATLGEWLEDQQRSSFHT 656 Query: 641 QSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 SLP AS LIQ GRL+RS G + I D+R++T+ YG++LLDALP F Sbjct: 657 LSLPRASLRLIQACGRLVRSEDDRGRITILDRRVVTQRYGRQLLDALPPF 706 >UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella marisrubri RepID=Q1MXU1_9GAMM Length = 707 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 231/692 (33%), Positives = 349/692 (50%), Gaps = 44/692 (6%) Query: 27 PRAPQRQMIADVAKTLAG----EEGRHL------AIEAPTGVGKTLSYLIPGIAIAREEQ 76 PR Q+QMIA +AKTL G +EG+ + +EA TG GKTL+YL+ I +A + Sbjct: 25 PRYGQKQMIAAIAKTLGGIQSDDEGKRVNDKQVCVVEAGTGTGKTLAYLLSTIPLAEDLN 84 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 K ++VSTA VALQ+Q+ SKDLP + K + ++ A GRGRY+C L + Q Sbjct: 85 KKIIVSTATVALQEQLISKDLPDVAKYSGLEFRYALAKGRGRYLCVHKLDQELKDQRMQD 144 Query: 136 DLLAFLDDELTPNNQEEQKRC-AKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 A +D + ++QK K + T +WDG RD+ I+ + W ++ C Sbjct: 145 ---ASMDMFGGADATDDQKGLFQKFLDEFLTGRWDGDRDNWPETIEYEDWSMVTATHREC 201 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEAVLPDPKNLLLVLDEGHH 252 NR C ++ CPFF AR+ +++AEV+VANH LVMA ++ A+LP+P + V DEGHH Sbjct: 202 SNRRCPHFNACPFFTARKSLEDAEVIVANHDLVMADISLGGGAILPEPAQSIYVFDEGHH 261 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 LPD A ++ Q + K ++ ++ + P+ + + + E++ Sbjct: 262 LPDKAISHFAGQVKLN------QEENLLKQISKAVDTLGKQCGTPMGLLQIVTQFPEKIG 315 Query: 313 ELIASLN---NILNLYMPAGQEAE----HRFAMGELPDEVLEICQRLAK----LTEMLRG 361 E+ + L +I+ Y+ E E HRF MG +PD ++E+ L K L + + Sbjct: 316 EIHSQLGFARHIILDYLGDQAEVEGISTHRFRMGVVPDALIELAGELNKTHNSLYQYIDK 375 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW-RLASLAQSSGAPVTKWA 420 + E L++ G + R M L E LW A P +W Sbjct: 376 IVEALKASLNKDDGEYRQADAERWFPIMGMLLARLEMAGLLWLSFAQQDHEDNVPTARWL 435 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 R E + + + I ++ L + LW +VTSATL +L F RL+ +G+ + Sbjct: 436 QRLITEYEDDIALYSSPILAAELLAKNLWSRCYGAVVTSATLTALGRFDRLRMKAGIAKD 495 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPS-IDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + F + SPF++ G+I++P VEP D+ Q ++++ + ES LV Sbjct: 496 --NYFERIQSPFDYPNLGEILVPNDAVEPGHGDDYTQQVSDLLESHLDENES-----TLV 548 Query: 540 LFASGRAMQRF-LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 LF S R M D+ ++ Q + + +++ HR ++ G S L GL SFAEG+ Sbjct: 549 LFTSRRLMNDVKFQLPFDVSDHVITQDEFSKQEVLKQHRDKIEAGLPSYLFGLASFAEGI 608 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 DL GDLL V I ++ F D PV T EWL+S R PF S+P AS LIQ VGRLI Sbjct: 609 DLPGDLLQHVIIVRLPFSVPDDPVDATLAEWLESKGRNPFMEISVPDASVRLIQAVGRLI 668 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 R+ G + + DKRL++K YG LLD LP F Sbjct: 669 RTEQDTGRITVLDKRLVSKRYGSLLLDGLPPF 700 >UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 Length = 744 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 242/721 (33%), Positives = 360/721 (49%), Gaps = 43/721 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVA----KTLAGEEGRH--------- 49 LT K I Y+ + + +P F PRA QR+MIA VA +TL EEG Sbjct: 30 LTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGEPPKREGESI 89 Query: 50 LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLK 108 IE PTGVGK+L+YL+ G +A+ K L+VS+A VALQ+Q+ +DLP L++K +L Sbjct: 90 AVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELT 149 Query: 109 FTAAFGRGRYVCPRNLTALASTEPTQQDLLAF------LDDELTPNNQEEQKRCAKLKGD 162 F A GRGRY+CP L L + QQ+LL F D + P EE K + + Sbjct: 150 FALAKGRGRYLCPYKLYQLTQSN-AQQNLLGFEAPAVLWDSKPKP---EELKLLRDIADE 205 Query: 163 LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVA 222 +++G RD IDD +W +++ D+ CL C ECPF++AR ++ +VVVA Sbjct: 206 FSARRFNGDRDAWPEKIDDAIWLKVTNDRHGCLKAACPNRPECPFYLARDMLETVDVVVA 265 Query: 223 NHALVMA--AMESEAVLPDPKNLLLVLDEGHHLPD--VARDALEMSAEITAPWYRLQLDL 278 NH L++A +M +LP P+N +DE HHLP ++R A E S I A W +L Sbjct: 266 NHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNI-AVWTLEKLPQ 324 Query: 279 FTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMP---AGQEAEHR 335 T +A ++ + A L++ E + L + + L E Sbjct: 325 LTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAEEPSLSMGLSENDRRTNSEPTWL 384 Query: 336 FAMGELPDEVLEICQRLA----KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNR 391 + G++P+ + A L + + GL + EK D + RL + Sbjct: 385 WEDGKIPEGLETTVSNTAIAARSLLKHVVGLNDALSATRREK--EQDGALIDRLTGEFGL 442 Query: 392 ALGMFEAQSKLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR 450 + E S +W L S G P+ KW R + ++ F+ I + L LWR Sbjct: 443 FIARIEQISAVWDLLSTVSIEGEEPLAKWIARRADDKNDYI-FNASPISSASHLANSLWR 501 Query: 451 SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPS 510 ++TSATL+SL SF+ + +GL +AL SPF+ +QG++ IP + P Sbjct: 502 RAAGAVLTSATLQSLGSFNLILRQTGLLWLPETTTLALKSPFDFEKQGELYIPSIYASPK 561 Query: 511 IDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF-LDYVTDLRLMLLVQGDQPR 569 + E H A + + K + + +G LVLF+S + MQ L D +LLVQG+ P+ Sbjct: 562 --DPEAHTAAVIEWLPKLISPTEAIGTLVLFSSRKQMQDVALHLPGDYLPLLLVQGELPK 619 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L++ H + + G+ S++ GL SFAEGLDL G QV I K+ F D+P+ T+ W Sbjct: 620 AVLLQKHHQAIEEGKASIIFGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRW 679 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 ++ PF ++P A LIQ VGRLIR+ +G V I D R+ T+ YG++LL LP Sbjct: 680 IEQRGGNPFIEITVPEAGIKLIQAVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPP 739 Query: 690 F 690 F Sbjct: 740 F 740 >UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteobacteria RepID=Q482M5_COLP3 Length = 712 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 238/720 (33%), Positives = 367/720 (50%), Gaps = 47/720 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRH---LAIEAPTGVG 59 L+ LK I YKA+ E + F PR Q +IA++AKTLAGE + + IEA TG G Sbjct: 2 LSDKLKQAIRQAYKAIGENLTHFNPRKQQTLLIAEIAKTLAGEYSKDRKIITIEAGTGTG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRY 118 K+L+Y + I +A K + +STA VALQ+Q+ KDLP LKK + FT A GR RY Sbjct: 62 KSLAYSLGAIPLALARDKKVCISTATVALQEQLVDKDLPFLKKYAGLNFDFTLAKGRQRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC + LT +T + A P+ ++ + K LD W G D + Sbjct: 122 VCRQKLTLAVTTGSGNEPAQAGFTFAEKPDAKDIRTLNKMHKALLDG-SWLGDIDSWETH 180 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--SEAV 236 + +W ++ +DK SCL +N + CPF AR + +A V+V NH+L++A +E + Sbjct: 181 LPQHIWHQVQSDKHSCL-KNLSEHTHCPFHKARETMDQAHVLVVNHSLLLADLELGGGKI 239 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR-PKTI 295 L P++ ++DE HHLP V RD SA IT + ++ TKL T + + K+ Sbjct: 240 LSPPEDTFYIIDEAHHLPKVTRDF--SSASIT---LKGSIEWLTKLRDTGDKMAKLIKSK 294 Query: 296 PPLAIPERLNAHCEEL-YELIASLNNI---LNLYM---------------PAGQEAEHRF 336 ++ +L C++L E+ LN I N+Y E +RF Sbjct: 295 NAISPALKLGDDCQDLLVEMQKVLNFIEANANVYFLENESSAQNNNFTKNSKNDEQVYRF 354 Query: 337 AMGELPDEVLEICQRLAKLTE-MLRGLAELFLNDLSE--KTGSHDIVRLHRLILQMNRAL 393 G +P + + L L++ L L +L+ N L E K G + L+ + L Sbjct: 355 ENGIIPQTLKNWAEDLQSLSKKSLSHLNKLY-NGLIEAVKDGDTQMYVAEPLLAEAGFML 413 Query: 394 GMFEAQSKLWRLASLAQSS-GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSI 452 E LW + + + S GAP+ +W + + Q +L I V LE +LW Sbjct: 414 QRLENLQSLWFMYAKSDSDKGAPMARWLEKITLKRQDYL-LSASPIEVGFTLENMLWSQC 472 Query: 453 PHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSI- 511 ++ SATLR+LNSF + GLK G ++ +DSPF++ ++VI +M E S Sbjct: 473 EGAVLCSATLRALNSFDHFRFQVGLKNNDGSQYQQVDSPFDYQNNSQLVIAKMDNEASAP 532 Query: 512 DNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF-LDYVTDLRLMLLVQGDQPRY 570 + ++ IA++ + ++ S LVLF+S M + L D +L ++VQG+ R Sbjct: 533 EFTDEVIAKLPKYLKQGNAS------LVLFSSYWQMNKVALALREDHKLEIMVQGELSRQ 586 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 +++ LH+KR + + S++ G QSF+EGLDL GD L+ + I K+ F SPV + E++ Sbjct: 587 QIIALHKKRCDDNKESIIFGTQSFSEGLDLPGDYLNNLIITKLPFSVPTSPVEQAQAEYV 646 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 + PF S+P S L+Q GRL+R+ G + + DKR++TK YGK+LLD+LP F Sbjct: 647 TAKGGNPFMTLSVPDTSKKLVQACGRLLRNEMDEGVITLLDKRVVTKRYGKQLLDSLPPF 706 >UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q21I38_SACD2 Length = 720 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 239/710 (33%), Positives = 348/710 (49%), Gaps = 59/710 (8%) Query: 27 PRAPQRQMIADVAKTLA-------GE---EGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 PR Q+ MIA++AKTL GE EG IEA TG GKT+SYL+ + +A+ Sbjct: 25 PRYGQKLMIAEIAKTLGSIQLNADGERQTEGHLCVIEAGTGTGKTVSYLLAALPVAKALG 84 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFT--AAFGRGRYVCPRNLTA-LASTEPT 133 K +V++TA VALQ+Q+ KDLP L + DLKF A GRGRY+C L L S++ T Sbjct: 85 KKVVLATATVALQEQVVLKDLPDLIRY-ADLKFNFCLAKGRGRYMCLSKLDKILTSSDDT 143 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 Q + +DE + ++ + K + L KWDG RD+ ID +W+R++TD Sbjct: 144 Q--FIPLYEDEHSEISEFDTKLYTSMMEKLGEGKWDGDRDNWHDEIDQPVWQRVTTDHRQ 201 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEAVLPDPKNLLLVLDEGH 251 C RNC + R+C FF AR + EA+ +VANH LV+A A+ A+LP P+ + + DEGH Sbjct: 202 CTGRNCKFVRQCAFFNARELLDEADCIVANHDLVLADLALGGGAILPAPEETIYIFDEGH 261 Query: 252 HLPDVARD--ALEMSAEITAPWYRLQLDLFTKLVA--TCMEQFRPKTIPPLAIPER---- 303 HLPD A + A + T W ++ L+ T F P A+ + Sbjct: 262 HLPDKALNHFASHTRYKSTIRWLGQSEGQWSNLIEPLTDASYFTQIAAPTEAVFKNVRSL 321 Query: 304 LNAHCEELYELIASL-----NNILNLYMPAGQEAEH--RFAMG-----------ELPDEV 345 + AH + E + +L + QE+ RF G EL D Sbjct: 322 MEAHLPHMQEWVYALEASNEKDNDRFRRDDRQESSRQLRFEQGVVPAAMEYLARELVDAF 381 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR- 404 L++ L KL + L L E D DI +H + L + LW+ Sbjct: 382 LDLSMHLGKLHKELETLIE----DDYPLVPRVDIETVHGAV---GTWLARADGNLSLWKS 434 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 A P+ +W T + I S LE+ LW +VTSATL + Sbjct: 435 YADTKVIENWPIARWITVTTFNDVMDYEIVSSPILASKALEKDLWSRCCGAVVTSATLTA 494 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 LNSF R + SG + + + + SPF++ + + IP VE + + H M + Sbjct: 495 LNSFDRFKIRSGTYDDS--HYSVVPSPFDYPNRAVLRIPSFAVEANFAAD--HTDSMIEY 550 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANG 583 + ++ K G LVLF+S + M D + D R+++L+QG Q + LV H+KR+ G Sbjct: 551 LPEIIDKKA--GTLVLFSSRKQMLEVFDQLPADFRMLILMQGSQSKQVLVSDHKKRIDEG 608 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 S++ GL SFAEG+DL G + V I KI F D P+ + EW++S F ++ Sbjct: 609 SGSIIFGLASFAEGVDLPGKYCTHVIIAKIPFAVPDDPLEASLAEWVESRGGNSFMQITV 668 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 P A+ L+Q GRL+R+ G V I DKRL+TK YG+ LL++LP F E Sbjct: 669 PDAAMRLVQACGRLLRTESDKGVVTIMDKRLITKRYGQALLNSLPPFKRE 718 >UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2A4_PROVU Length = 688 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 205/652 (31%), Positives = 320/652 (49%), Gaps = 44/652 (6%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 IEA TG GKTL Y IP I +A+ ++KTL++STA VALQ+Q+ KDLP ++ D F Sbjct: 62 IEAGTGTGKTLGYSIPLIPLAQAKEKTLILSTATVALQEQVVHKDLPDIRASAGLDFTFA 121 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 A GRGRY C L A E + +L F D+ + L + D W+G Sbjct: 122 MAKGRGRYFC--KLRAAREAE-KEMELFGFQDETI-----------KILTDEFDDDLWNG 167 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA- 229 RD + I D +W++ + C +C +++ CPF+ AR E+ +V++ANH +VMA Sbjct: 168 DRDTYPVEITDKIWQKANAVAGQCPAHHCPHFKSCPFYKARDEMDSVDVIIANHDIVMAD 227 Query: 230 -AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATC 286 ++ VLP+PKN + V DEGHHL A + + A W D+ LV + Sbjct: 228 LSLGGGVVLPEPKNCIYVFDEGHHLTSKAISHFSSTCSLDAAIKWSDEIFDMVIPLVDSY 287 Query: 287 ---MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHR----FAMG 339 ME++ LN+ EL + + L +P E ++R F G Sbjct: 288 DDNMERY----------ATTLNSLASELKKELVLTKEFLLRNLPFKGEYDNRQTCIFPRG 337 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 E P EV+ + + K+ E L+ + +K + ++ +++ L Sbjct: 338 ETPHEVIHYAKTVGKVLEELKNTNGKMTAIIEDKAKGPEGGEHKMIVGELDNKLSTLVTA 397 Query: 400 SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 + + G P +W R+ + + + + + L+ ++W+ I+TS Sbjct: 398 WAQFVNVNKRDKQGIPFARWVDVN-RDKKNEIVINSSPVHAGEMLKSIVWKDAHAAIITS 456 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 AT+RSL F + +GL A + SPF++ G + IP+M+ P + H Sbjct: 457 ATIRSLGKFDAYLDQAGLP--ADTPTLLAQSPFDYENNGVLFIPKMKFSPK--DSAAHTT 512 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRK 578 E+ + V K+ G LVLFAS + M + + D++ +L+QG P+ +V H+ Sbjct: 513 EVGSLLPTLVLRKR--GCLVLFASKKQMTEVFEMMPDDIQDKILMQGSIPKSEIVSRHKL 570 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 R+ G+ S++ G+ SF+EG+DL GD + V I K+ F PV +T EW++S+ R F Sbjct: 571 RIDRGDDSIIFGMSSFSEGVDLPGDYCNNVIIAKLPFMVPTDPVSLTLAEWMESVGRNTF 630 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 E S+P A LIQ VGRLIR+ G V I D RL+TK YG +LD+LP F Sbjct: 631 EEISVPDACIKLIQSVGRLIRTEQDTGAVTILDNRLVTKRYGAGILDSLPPF 682 >UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV Length = 725 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 238/738 (32%), Positives = 361/738 (48%), Gaps = 67/738 (9%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA---GEEGRHLA------ 51 MALT +K QI Y+ + D R QR MIA++A+ + +G+ + Sbjct: 1 MALTEDVKQQIQQAYRDVLAG-KDIRARYGQRLMIAEIARYMGEITDNDGQRTSPPATCV 59 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 +EA TG GKTL+YLI I +A+ KTLV+STA VALQDQI KDLP L+K D +T Sbjct: 60 VEAGTGTGKTLAYLIAAIPVAKALGKTLVISTATVALQDQIVLKDLPDLRKHSKLDFSWT 119 Query: 111 AAFGRGRYVCPRNLTALASTEP--TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY-- 166 A GRGRY+C L A E + FL D+ P + E + R A + L +Y Sbjct: 120 LAKGRGRYLCMSRLEARLHDEGHGDSDTMPLFLLDQ--PVDDEARSR-ATFENMLASYGS 176 Query: 167 -KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHA 225 WDG RDH I D++WR+++TD C NR+C Y+ C FF AR+++ +A+VVVANH Sbjct: 177 RDWDGDRDHWPEQIPDEIWRQVTTDHRQCTNRHCAYFDSCAFFDARKDLDDADVVVANHD 236 Query: 226 LVMA--AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTK 281 LV+A A+ A+LP+P+N L + DE HHLPD A + S + T W + K Sbjct: 237 LVLADLALGGGAILPEPENALFIFDEAHHLPDKALNHFAASVPLNSTRQWLKQLSQALVK 296 Query: 282 LVATCMEQFRP------KTIPPLAIPER-LNAHCEELYELIASLNNILNLYMPAGQEAEH 334 M+ + P K + ++ R L+ +YE + N + + A+ Sbjct: 297 -----MQPWLPAGSQAAKAVEKISTAGRDLDLALTRVYEEVE--QNTGWEFNEERRSAQW 349 Query: 335 RFAMGELPDEVLE-----------ICQRLAKLTEMLR-GLAELFLNDLSEKT-------- 374 R+ G LP+++ E +C+ L L + L+ E +L T Sbjct: 350 RYPDGALPEKLAELAGETRIATAGLCRHLGTLVDELQSAFDERKDPELDRDTADSWYPVV 409 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFH 434 GS +L L + + G+ + + G P +WA R+ + + Sbjct: 410 GSFHARAEDQLRLWIAWSEGVAIVSDEEEPVVEAPARKGPPAARWAVRQRWDHAEDITLF 469 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNH 494 + + L LW ++TSATL +L F RL+ +GL E + R++ + S F + Sbjct: 470 SSPVLADNLLYSRLWSRAYGAVLTSATLTALGRFDRLRSRAGLPEAS--RYLVVPSSFRY 527 Query: 495 CEQGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 E + +P M P+ D + + + + + + LVLF S R MQ+ D Sbjct: 528 AEMATVEVPAMVAMPTDDGFADALVKRLPELWAGEKAT------LVLFTSRRQMQQVRDA 581 Query: 554 VT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 + + ++L Q D + ++ +H RV G+ SVL G+ SFAEG+DL G L V I + Sbjct: 582 LAPEYPELILTQDDMAKNEVLRVHCSRVDEGKPSVLFGVASFAEGIDLPGRYLHHVVITR 641 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + F D P+ + EW+ PF ++P AS L+Q VGRL+R+ G V I D+ Sbjct: 642 LPFSVPDDPIEASLAEWVTQRGGNPFMEITVPDASVKLVQAVGRLLRTEQDTGRVTILDR 701 Query: 673 RLLTKNYGKRLLDALPVF 690 R++ + YG+ LLDALP F Sbjct: 702 RIVARRYGQLLLDALPPF 719 >UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS96_9GAMM Length = 668 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 218/676 (32%), Positives = 340/676 (50%), Gaps = 32/676 (4%) Query: 34 MIADVAKTLAGEE--GRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQ 91 MIA VA L+ + R +EA TG GKT+ YLI + IAR +KT+VV+T +ALQ+Q Sbjct: 1 MIATVANALSDNDPDKRLAVVEAGTGTGKTVGYLIAALPIARALKKTVVVATGTIALQEQ 60 Query: 92 IYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPN-N 149 + KDLP LL+ D GRGRY C + ++ L +DE+ N N Sbjct: 61 LIHKDLPELLEACGWDHSCALVKGRGRYACNLKMEQCLDAIKSKDAGLFLFEDEVAFNPN 120 Query: 150 QEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFV 209 + + ++ L WDG RD + I D WR L+ D+ C R C + +C FF Sbjct: 121 VQTEDLYREMSDALAEGTWDGDRDSWESRIQDVEWRALTIDRRQCSGRRCRFVNQCAFFN 180 Query: 210 ARREIQEAEVVVANHALVMA--AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI 267 AR E++E+E +VANH LVMA A+ A+LP P++ + + DEGH + D A + Sbjct: 181 ARNELEESECIVANHDLVMADLALGGGAILPPPEDCIYIFDEGHRIGDTAIRHFGAECRV 240 Query: 268 TAPWYRLQLDLFTKLVATCMEQ---FRPKTIPPLAIPERLNAHCEELYELIASLNNILNL 324 + +L C Q F T +P RL ++ EL+ IL Sbjct: 241 NN-----SITWLERLQKQCKGQVPVFEKDTALAEQLP-RLEKGATKIIELLNVAYPILQQ 294 Query: 325 YMPAG---QEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR 381 + + ++ +R+A G++ + + +I +LAK T G E+ ++ L++ G Sbjct: 295 ALESADYPEDGRYRYANGDIGEGLRDIASQLAKQTSAWLGRLEVLVDTLNDALGDKQYPI 354 Query: 382 LHRLILQMNRALGMFEAQSK----LW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 + + G ++++++ LW RL ++ P+ W ++ + + + Sbjct: 355 PAPDVELFYQQAGSWQSRAEQLLALWDRLQREIKTGDMPLACWLRLDDSGNNVDISVNAS 414 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 I+ ++ L +LW S +VTSATLR+L SF LQ +G+ + A F+ + F++ + Sbjct: 415 PIQAAELLRDVLWGSCYASVVTSATLRALGSFQTLQRETGIPDFA--HFMTVAGAFDYQQ 472 Query: 497 QGKIVIPRMRVEPS-IDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM-QRFLDYV 554 I +P VE + D ++I + A + + H G LVLF+S R M Q + D Sbjct: 473 AAVIRVPADAVEGNQTDAHTRYIIDHFAEYEE-----PHCGTLVLFSSRRQMEQVYDDLS 527 Query: 555 TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIA 614 ++L+ +L+QG +V LH++R+ G SVL+GL SFAEG+DL GD V I K+ Sbjct: 528 SELQKNILIQGQLSNREMVRLHKERIDQGRTSVLMGLASFAEGVDLPGDYCRHVVIAKLP 587 Query: 615 FPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 F D P+ EW+++ F SLP AS L+Q GRL+R+ G V I DKRL Sbjct: 588 FAVPDDPLHEALSEWIEAGGGNSFFDISLPIASLRLVQACGRLLRTEKDTGTVTILDKRL 647 Query: 675 LTKNYGKRLLDALPVF 690 +TK YG +LL+ LP F Sbjct: 648 ITKRYGTQLLNGLPPF 663 >UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMS2_9GAMM Length = 707 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 215/716 (30%), Positives = 359/716 (50%), Gaps = 62/716 (8%) Query: 16 KALQEQIPDFI------PRAPQRQMIADVAKTLAG---------EEGRHLAI-EAPTGVG 59 K +Q+ F+ R Q+ MIA+VA+TL E G H+ + EA TG G Sbjct: 8 KTIQQAYSSFLDNRGLKARYGQKMMIAEVARTLGSINSNHEGVREGGNHICVTEAGTGTG 67 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRY 118 KT++YL+ + IA+ K +VVSTA VALQ+Q+ KDLP L+ + +L + A GRGRY Sbjct: 68 KTMAYLLASVPIAQARNKKVVVSTATVALQEQLILKDLPQLVTEAGINLTYGLAKGRGRY 127 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY---KWDGLRDHT 175 C N + + + +A +DE+ + +Q+ ++KG L Y +WDG RD Sbjct: 128 FCISNAEKVLEQQ-NELGQIALYEDEVA--QKLDQEVILEVKGLLSQYASGEWDGDRDSL 184 Query: 176 DIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMES 233 + D +W+ ++D C NR C + CPFF+AR+++ + +++VANH LV+A ++ Sbjct: 185 VDTVPDPIWQLSTSDHVRCTNRRCSNFSSCPFFLARQQLDKWDLIVANHDLVLADLSLGG 244 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCMEQFR 291 A+L P++ + + DEGHHL S I + W KL+ E Sbjct: 245 GAILSPPEDTIYIFDEGHHLSTKTTGHFAYSLRIKSSIRWLSTVTRTLNKLLNEASEH-- 302 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMP---AGQEAEHRFAMGELPDEV--- 345 + ++ ++L ++ + + +LN+ + +G +RFA G +P+ + Sbjct: 303 ---VVLISYIDKLATPFSDMERSLQEMQTLLNMLLEDKLSGPSDRYRFAQGIIPESLQLS 359 Query: 346 -LEICQ-------RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE 397 L + Q + ++ ++L+ + L DL + G + Q+ + Sbjct: 360 ALNLAQAAERVVLKFEQIVDLLKEGMDGELADLPREMG-------EKWFPQIGAFHSRVQ 412 Query: 398 AQSKLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 + L R S + +GA P +W + + + L H + +D LE LW + Sbjct: 413 SIYGLARSYSASDQTGALPTARWIQKVDGNEGIDLACHSSPVSAADNLEEHLWSQCYGAV 472 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 VTSATL +L F RL G+ + +SPF+ ++ +P M+ +P N + Sbjct: 473 VTSATLTALGRFDRLYTDLGIPSDS--PCAVFNSPFDFQNAAQLRVPAMKTDPG--NPDL 528 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV--TDLRLMLLVQGDQPRYRLVE 574 H E++ + + + ++ LVLF+S R M+ LD + T + +LVQGD ++ ++ Sbjct: 529 HNQEISDYLIQLLPTET--SALVLFSSWRQMRYVLDAMPATIVADSILVQGDLAKHEILR 586 Query: 575 LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN 634 HR+++ + S++ GL SFAEG+DL G L+ V I K+ F D PV T EW++S Sbjct: 587 QHREKIDQQKASIIFGLASFAEGVDLPGKYLTHVIITKLPFGVPDDPVDATYSEWIESQG 646 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 R PFE +P AS L Q GRL+R+ G++ + D+R +T+ YGK+LL ALP + Sbjct: 647 RNPFEEWVIPMASMRLTQATGRLLRTEEDKGDITLLDRRFITRRYGKQLLAALPPY 702 >UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae RepID=B2SSY1_XANOP Length = 710 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 234/709 (33%), Positives = 342/709 (48%), Gaps = 42/709 (5%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 +LT +KA I Y LQ P F R Q QMI V++ LA G +A EAPTGVGK+ Sbjct: 19 SLTDPIKASIRDAYARLQANTPGFATRRAQSQMIGLVSRALATSGGIGIA-EAPTGVGKS 77 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVC 120 L YL G+ IA +K LV+ST VALQ Q+ +D+P LK + A GR RY+C Sbjct: 78 LGYLTAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKATGLEASVALAKGRTRYLC 137 Query: 121 PRNLTAL---ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 RN L S +D A D L+P + + KR AK W+G D Sbjct: 138 TRNAAELEGDTSQNAMFEDEQALYDRPLSPVDADLAKRLAKAYA---ARTWNGDLDDAPE 194 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA------AM 231 + L R++T + C R C Y +CP AR +++EA++VV NHAL+++ A Sbjct: 195 QVSVPLRMRITTPASGCAGRRCSYAAQCPVLKARTDVREAQIVVTNHALLLSSLSLGDAE 254 Query: 232 ESEAVLPDPKNLLLVLDEGHHLPDVARD------ALEMSAEITAPWYRLQLDLFTKLVAT 285 + ++ P ++LLVLDEGHH+ VA D L+ A T R+Q+ L+A Sbjct: 255 NGQPLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTG---RMQI-----LIAA 306 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH--RFAMGELPD 343 + L E + L A ++ ++ P E + R A G+LP Sbjct: 307 AYRAVDKDKLGNLLPNEAIEVAARVSRLLKAFHADVERVWKPEPGERDPLWRAANGKLPP 366 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW 403 + + L + T L + +++ G D L + AL M E Q LW Sbjct: 367 QWGPAIEELGEETRALFNWVHAAHSAIAK--GKQDDSAREGLQRSLGLALEMAEQQHNLW 424 Query: 404 RLASLAQSSG-APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 G P+ +W T R+G L HC + + L ++W + +++TSATL Sbjct: 425 SGWRREDKEGQPPMARWITLS-RDGDLIC--HCSPVSAAQVLRTMIWNEVDSVVMTSATL 481 Query: 463 RSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMA 522 F +GL + A +L SPF+ Q ++++P V P D+ E H E+A Sbjct: 482 TGGGDFQSFAIDNGLPDHA--EMASLASPFDLPNQAELIVPNFPVTP--DDREGHPKEVA 537 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVA 581 + ++++ G +VLF S M++ D + R +LVQG+ + +L+ H +R+A Sbjct: 538 NYLVRELDWTAK-GSIVLFTSRWKMEKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIA 596 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 GE SVL GL SF EGLDL G+ + V I ++ F P T EWL+S F + Sbjct: 597 AGEGSVLFGLNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTSTLSEWLESRGHNAFNLI 656 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 ++P A L Q GRLIRS G V+I D RLLT+ YGKR++DA+P F Sbjct: 657 AIPHALRTLTQFSGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDAMPPF 705 >UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassified Gammaproteobacteria RepID=A4A9L6_9GAMM Length = 707 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 235/715 (32%), Positives = 349/715 (48%), Gaps = 41/715 (5%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA---------GEEGRHLA- 51 AL+ A K I Y A+ + PR QRQMIA+VA TLA EG +A Sbjct: 3 ALSPADKDAIREAYTAITDA-RGLTPRWGQRQMIAEVANTLARLSPSMGAADTEGSPIAV 61 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 IEA TG GKT++Y+IP + +AR K LV++TA VALQ+Q+ KDLP +KK D F Sbjct: 62 IEAGTGTGKTIAYVIPALVMARALNKRLVIATATVALQEQLVHKDLPDIKKGSGLDFSFQ 121 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGD-LDTYKWD 169 A GR RY+C L L + E + DE++P + L D L WD Sbjct: 122 LAKGRRRYLCLSQLDRLMARESGGGQTMGLYPDEVSPALARDALESYGLMLDALARGDWD 181 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 G RD+ I+D W ++ D+ C R C R C F+ AR +QEA+VVV NH LV++ Sbjct: 182 GDRDNWSAPINDADWFPVTADQGQCTGRRCPNIRNCSFYRARDGLQEADVVVTNHDLVLS 241 Query: 230 --AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWY---RLQLDLFTKL 282 A+ A+L P++ + + DEGHHLPD A + + T W R L L Sbjct: 242 DLALGGGAILTPPEDTIYIFDEGHHLPDKALNHFASFCRLPSTLSWLGDSRKALAKGAPL 301 Query: 283 VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 +AT + P A+ + L +++ E A++ + E + RF G +P Sbjct: 302 LAT-LPGLSTVLEPLPALFDDLQLRLQQIAEKAAAIMASAGDF-----EEQLRFEGGVVP 355 Query: 343 DEVLEICQRLAKLTEMLRG---LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 ++ + LA L G E ++D E S VR QM + A+ Sbjct: 356 PDLQQATASLASQWARLTGRLITLEAGIDDALEDE-SFASVRDELEAWQMAVGGMLVRAE 414 Query: 400 ---SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 S A+ A P +W R + +L + HC I +D L LW +I Sbjct: 415 GVLSLFQDFAADAAEESPPRARWLKRRADDEELAIDLHCSHILAADILREQLWDRAAGVI 474 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 +TSAT+ +L SF R + SG+ E R+ + SPF++ + + +P M+ EP + Sbjct: 475 LTSATMTALGSFDRFRARSGVPEDG--RYKIVASPFDYG-KATLHVPAMKSEPG--DAPA 529 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVEL 575 H E+ +++ + G LVLF+S R M D + + R +L Q D + ++ Sbjct: 530 HTRELIELLPDLLDAGE--GSLVLFSSRRQMNDVYDGLPVEWRSRILRQDDYSKQEILRR 587 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 HR+ + +G +V+ GL SFAEG+DL G V I K+ F D+PV EWL++ R Sbjct: 588 HRETIDDGRGAVIFGLASFAEGVDLPGGYCQHVVIAKLPFAVPDNPVDAALAEWLEAQGR 647 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 F S+P A+ L+Q GRL+R+ G V + D+R++T+ YG+ +LD+LP F Sbjct: 648 NAFMEISVPDAALKLVQASGRLLRTETDVGRVTLMDRRVITRRYGRAILDSLPPF 702 >UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJJ6_POLNA Length = 750 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 225/719 (31%), Positives = 330/719 (45%), Gaps = 66/719 (9%) Query: 15 YKALQEQIPDFIPRAPQRQMIADVAKTLAGEE--------GRHLA-IEAPTGVGKTLSYL 65 Y + P FI R Q QM+ T + G HLA +EA TG GKT++Y Sbjct: 51 YGEVAADWPGFIARPGQYQMMQACLLTFLSAKAPEDEVRTGSHLAQLEAGTGTGKTVAYC 110 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLT 125 + I + +KT++VSTA VALQ+Q++ KDLP L +IIPDL++ GR RYVC L Sbjct: 111 LAAIVASEVLKKTVIVSTATVALQEQLFQKDLPRLAEIIPDLRYDILKGRARYVCESRLE 170 Query: 126 ALASTEPTQQDLLAFLDDELTPNNQEEQKRCA---------------KLKGDLDTYKWDG 170 + + QD L L EL ++ + +R A L++ WDG Sbjct: 171 GVIND--VAQDGL--LTGELFQDSFGDARRQAAGIVRDRTQAMRWFKSSAKKLNSGTWDG 226 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 D D WR++ + +C C ++R C FF ARR+ A + VANHALV+A Sbjct: 227 DIDSLAQPPDPQDWRQVQANAHACNGGQCEHFRNCAFFKARRQAASATLQVANHALVLAT 286 Query: 231 MESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVAT--CME 288 +++++ L D N L V DE HHLP +A + YR +L +KL+ + + Sbjct: 287 LQTDSSLIDAGNTLFVFDEAHHLPGIAAEQFS---------YRARLGTSSKLLTSLRTVA 337 Query: 289 QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE--------HRFAMGE 340 K +P P+ + +L+ + L + Q+A+ HRFA G Sbjct: 338 LRHGKALPASTRPDPV-----AFAQLVTGCTDKLAMLERYWQDAQLVSADQPVHRFAQGR 392 Query: 341 LPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLI---LQMNRALGMFE 397 +P+ ++ CQ LA L + + L E S + +++ L Sbjct: 393 IPEALVLECQELATLIRAIASVVSSIAAALKEPDESKSPTQREEQTHAGVELGVYLSRLG 452 Query: 398 AQSKLWRLASLAQSSGAPVTKWAT-REEREGQL-HLWFHCVGIRVSDQLERLLWRSIPHI 455 KL L++ A P KW E+ G W + + L + LW + Sbjct: 453 TLDKL--LSAWATHDRVPWAKWIEWAEDGAGSAPDAWLCASPMTAAQVLSKNLWNKVSAA 510 Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP-SIDNE 514 + TSATL + SF +SG+ R + +DSPF++ QG++ I M P S Sbjct: 511 VCTSATLTACGSFDFFDRLSGMNRFPERRSLVVDSPFDYATQGELRIAPMTHSPKSPGFS 570 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLV 573 ++ ++ R+ G LVLF S R MQ + DL +LVQG + R L+ Sbjct: 571 DELCDKLPGLLREHPH-----GQLVLFTSRRQMQACHAALPQDLLDQVLVQGVRSRTELL 625 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 H +RV GERS++ GLQSF EG+DL G L V I K+ F P SPV EWL Sbjct: 626 REHGRRVKAGERSIIFGLQSFGEGIDLPGRLCEHVVIDKLPFTPPSSPVEEALAEWLSGQ 685 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 R PF S+P A L Q GR +R+ + + D RL+T YG+ +L LP FP+ Sbjct: 686 GRDPFAELSVPRAGMKLAQWAGRGVRTVTDRAVITVCDTRLVTMRYGQAILAGLPAFPL 744 >UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BE15_9GAMM Length = 704 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 219/704 (31%), Positives = 335/704 (47%), Gaps = 63/704 (8%) Query: 24 DFIPRAPQRQMIADVAKTLA----GEEGRHLA------IEAPTGVGKTLSYLIPGIAIAR 73 D R Q+ M+A VA+T EEG ++ IEA TG GKT+ Y + I IA+ Sbjct: 22 DLKARHGQKHMLAQVARTFGTIELDEEGVRVSETPVGVIEAGTGTGKTIGYALSAIPIAQ 81 Query: 74 EEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA--AFGRGRYVCPRNLTALAST 130 K LV++TA VALQ+Q+ SKDLP +L DL+F A A GRGRY+C L L Sbjct: 82 SLDKKLVIATATVALQEQVVSKDLPDILSNT--DLQFNAVLAKGRGRYLCTHKLEQLIQF 139 Query: 131 EPTQQDLLAFLD-----DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWR 185 ++ + DE T N E + + +W G RD +DD LWR Sbjct: 140 YSGTVVAMSLFEETMEADEATLNQYNE------MMTSFGSGEWSGDRDQWPDKLDDSLWR 193 Query: 186 RLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEAVLPDPKNL 243 L++ CLNR C +Y+ CPFF AR+ + +A+V++ANH LV+A ++ A+LP P++ Sbjct: 194 TLTSSHRECLNRRCPHYQNCPFFEARKALDDADVIIANHDLVLADLSLGGGAILPAPEDT 253 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 L V DEGHHLPD A + + ++T + Q D + K + PK LA + Sbjct: 254 LYVFDEGHHLPDKA--LMHFANQMTVKYLLNQFDNWKKQL--------PKLRLELAYGDS 303 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE------LPDEVLEICQRLAKLTE 357 ++ + + + + L+ A Q HR P++++ + L L Sbjct: 304 SEFLIDQFSDQLNAAHEQLSFAWSALQPWFHRLEETNDQLTLHQPEQLVPVSSILEPLLS 363 Query: 358 MLRG-------LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ 410 + G + E LS T + RL + + R L E L ++S Q Sbjct: 364 PMTGVYTSLTAIEESIRKRLSNTTDLDEKERLQNAMPLIGRWLSRTEPAKDL--VSSWLQ 421 Query: 411 SSG---APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS 467 + AP +W R L + + + L+ LW IVTSATL Sbjct: 422 TDSPDYAPTARWMERINTPDVQDLSLNTSPVTANAVLKAYLWNRCCGAIVTSATLTVEAR 481 Query: 468 FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 F R +G+ + A + + SPF++ ++P VE E H + Sbjct: 482 FDRFLAQAGISDAA--HLLQVPSPFDYPNLVTAIVPEFAVEGGA--REAHSESIVRLIES 537 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 Q+ K G L+LF+S M + + D + ++ +Q D P+ L+ HR+R+ G S Sbjct: 538 QL--PKETGNLILFSSRAQMYEVYEALPVDWQDVITLQDDLPKTALIAHHRERLEEGAGS 595 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 L GL S AEG+DL G+ L+ + I K+ F D P+ T WL+S PF+V +LP+A Sbjct: 596 TLFGLASLAEGVDLPGNYLTHLVIAKLPFGVPDDPISSTLSLWLESKQLNPFQVVTLPAA 655 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 + ++Q GRLIR G + + D+RL+TK YGK ++++LP + Sbjct: 656 TIRMVQACGRLIRHENDRGTIWVMDRRLVTKRYGKTIINSLPNY 699 >UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEF3_9ENTR Length = 690 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 223/682 (32%), Positives = 331/682 (48%), Gaps = 43/682 (6%) Query: 27 PRAPQRQMIA----DVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 PRA Q M+A V T + E+ R IEA TG GKTL Y +P I +A E+ KTL++S Sbjct: 29 PRAGQVDMMAFCSEVVNATPSEEQYRVGVIEAGTGTGKTLGYCLPLIPLAMEKHKTLIIS 88 Query: 83 TANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 TA VALQ+QI SKDLP ++ + + A GR RY C +E + ++ Sbjct: 89 TATVALQEQIISKDLPEIQARAGLSFSYAMAKGRSRYFCQMRCDVHMESE---MNAYGYI 145 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 D++ E A G W G RD I + +W R++ + C + C + Sbjct: 146 RDDV------EDISKAFAGG-----HWTGERDSYPDEISEAVWGRVNAIGSQCPKKRCPH 194 Query: 202 YRECPFFVARREIQEAEVVVANHALVMA--AMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 Y CPFF+AR + +VV+ANH +V++ ++ +LP + + V DEGHH+P A + Sbjct: 195 YHRCPFFLARALLDSVDVVIANHDIVLSDLSLGGGIILPPQEESIYVFDEGHHVPQKAIN 254 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHC-EELYELIASL 318 SA + A + ++F +V T E + + H EL +L +L Sbjct: 255 HFATSASLDASRH-FMAEIF-DMVMTMPESYGGTMEQHVQQLVEFAGHAGNELGDLRGTL 312 Query: 319 NNILNLY----MPAGQEAE-HRFAMGELPDEVLEICQ-RLAKLTEMLRGLAELF-LNDLS 371 LN MP G E++ +RF G +P+ + + L + EM + ++ + D + Sbjct: 313 LRSLNWRSDHDMPNGVESDIYRFPEGFVPEAIAALFSPALKTVNEMQNIVVKMTAIVDEA 372 Query: 372 EKTGSHDIVRLHRLILQ--MNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 + S D + L ++ + NR GM +A L SG P+ +W + Sbjct: 373 GRDISEDDLALQKMAVGELANRLAGMHQA---LASYCGNKTVSGMPMARWINVRRTKRST 429 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 + +C + + L+ LW IVTSAT+RSL+ F E +GL Sbjct: 430 EVVINCSPVYAGEHLKSELWSKAYATIVTSATIRSLSKFDAFLEQAGLPVDTPTLLA--R 487 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 SPF++ G + IPRMR P+ N E+H AE+ K V + G LVLFAS R M+ Sbjct: 488 SPFDYQNNGVLFIPRMRSVPT--NHEEHTAEIIELLPKLVLRLQ--GCLVLFASRRQMEE 543 Query: 550 FLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 + + +LL+QG P+ ++ H+ R+ GE S++ G+ SF+EG+DL G + V Sbjct: 544 VSKAMPQHISPLLLIQGALPKREILLRHKLRIDRGEPSIIFGMASFSEGVDLPGVYCNNV 603 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I K+ F PV T EWL+ R F S+P A L Q VGRLIR+ G V Sbjct: 604 IIAKLPFSVPTDPVGQTLTEWLEKNGRDAFREISIPEACLKLTQSVGRLIRTESDTGAVT 663 Query: 669 IYDKRLLTKNYGKRLLDALPVF 690 I DKRL TK YGK +L +LP F Sbjct: 664 ILDKRLKTKAYGKDILASLPPF 685 >UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT1_HAHCH Length = 718 Score = 285 bits (729), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 221/727 (30%), Positives = 357/727 (49%), Gaps = 50/727 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA-----GE-----EGRHLAI 52 ++ +K QI + Y+ + PR+ QR MIA++A+ L+ GE + + Sbjct: 2 VSEGIKEQIQSAYRKYI-AARNIKPRSGQRHMIAEIARYLSSIELDGEFRRSNDATTCVV 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAA 112 EA TG GKTL+YL+ I A +K +V+STA V LQ Q+ ++LPLL + DL+F A Sbjct: 61 EAGTGTGKTLAYLMASIPFAAALRKKIVISTATVTLQQQVVQRELPLLAEHT-DLEFKVA 119 Query: 113 F--GRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPN-NQEEQKRCAKLKGDLDTYKWD 169 GRGRY+C L + + + LL + P+ + E +R D W Sbjct: 120 LAKGRGRYICLHKLDSYLAGQEQGILLLDGPQESSGPDVDAEAYQRFMNWMVD---KGWS 176 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 G D I++ LW ++TD CLN+ C ++ +C ++ A+ E ++AE++VANH LV A Sbjct: 177 GDWDSAPEPIEESLWSTVTTDHRQCLNKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFA 236 Query: 230 --AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA--- 284 A+ VLP P+ + + DE HH+ D A + SA + + L+ L LV Sbjct: 237 DLALGGGFVLPPPEETIYIFDEAHHMADKALNHFAFSAGLKSSQKMLR-GLSRALVEGQS 295 Query: 285 --TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEA--EHRFAMGE 340 EQ + P A+ + ++ H + + LN + + + A ++R+ MG Sbjct: 296 VFAYDEQITNRVSPMAALSQEVHHHLDAVARF---LNETIE-WEENDERATFQYRYPMGV 351 Query: 341 LPDEVLEICQRLA-KLTEMLRGLAELF--LNDLSEKTGSHDIVRLHRLILQMNRALGMFE 397 +P+E+ ++ +A K+ EM + L + L +L+EK R + Q AL +++ Sbjct: 352 IPEELRKLSAAMADKVGEMTKELEAVLKRLRELAEKEQPGGAQR--QAYDQAVMALSVYQ 409 Query: 398 AQ----SKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSI 452 +Q +WR + Q P +W T +E + H + L + LW Sbjct: 410 SQVENLEDVWRIMGEEVQEGHTPTARWLTTWAKETDSDVVVHVSPTNAAHLLRKRLWSRA 469 Query: 453 PHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSID 512 ++TSATL F RL GL + G F SPF+ + + + +P Sbjct: 470 FGCVLTSATLSVAGRFDRLAGQVGLPD--GSTFAIHHSPFDFNNNCTLELCDLGRDPQ-- 525 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL--MLLVQGDQPRY 570 + E ++ ++ + ++ K+ LVLF++ + MQ + D +L +++ Q + Sbjct: 526 DSESYLEMLSQALLRIIDEKQ--ATLVLFSARKHMQFAARALADTKLGSLIITQDSGNKG 583 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 +L++ HR RV + SVL GL SFAEGLDL GD L V I K+ F D PV T EWL Sbjct: 584 QLIDTHRSRVDENKGSVLFGLASFAEGLDLPGDYLKHVIIAKLPFAVPDDPVEATYAEWL 643 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 KS PF LP A L+Q GRL+RS G++ I D+RL T++YG+ +L+ALP + Sbjct: 644 KSKGGNPFNQVVLPDAITRLLQACGRLLRSERDSGKISIMDRRLWTRSYGRIILNALPPY 703 Query: 691 PIEQPEV 697 + ++ Sbjct: 704 KVVSADI 710 >UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4_ACISJ Length = 758 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 223/724 (30%), Positives = 345/724 (47%), Gaps = 48/724 (6%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL------------AIEAPT 56 AQ ++A+ + F R QR+M VA+T + + L ++A T Sbjct: 37 AQALQSFEAVVQSTAGFRVREGQRRMAEQVAQTFSQAQLGKLEDDDALPQRAIAVVQAGT 96 Query: 57 GVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGR 115 GVGK+L+Y +P IA+A +++STA VALQ+Q+ KDLP L ++ +F A GR Sbjct: 97 GVGKSLAYSVPAIAMALARGTRVLISTATVALQEQLVHKDLPALAARMEQPFQFALAKGR 156 Query: 116 GRYVCPRNLTALASTEPTQQDLLA-------FLDDELT-----PNNQEE--QKRCAKLKG 161 GRYVC L LA F D+E P ++ E K A + Sbjct: 157 GRYVCKLKLERLAGGGAAGPGGDGDLPDDDLFADEEAEQRGKRPRHESEARMKFYASMAD 216 Query: 162 DLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVV 221 L T +WDG RD + + W ++ + +SC ++C + +C ++ R+++ A+V+V Sbjct: 217 ALATSEWDGDRDTLATPPEPEAWSPVAAEASSCTGKHCPVFNQCTYYERRKQLVAAQVIV 276 Query: 222 ANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK 281 ANH L+++++ + +LP+ N LLV+DE HHLP A D A+++ + +L Sbjct: 277 ANHDLLLSSLGAR-LLPELDNCLLVIDEAHHLPATALDQFACEADLSRLTWIDRLASRAL 335 Query: 282 LVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL-NNILNLYMPAGQE------AEH 334 + +E IP A RL A ++ L+ + L +P ++ Sbjct: 336 RIGQLVEVEEIADIPNHAA--RLRAALQDAARLVMDVYGEQLRAPVPGRRQFASSLPTRA 393 Query: 335 RFAMGELPDEVLEICQRLAKLTE----MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMN 390 R A G LP+ ++E + A E LR +++ +++ +K + RL +L Q+ Sbjct: 394 RVAGGVLPEALVEPFSQAAHHAEGFLNALRAISKALRSEMRDK--PDEARRLSQLYAQIG 451 Query: 391 RALGMFEAQSKLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 EA +L GA P KW T E + + H + + L LW Sbjct: 452 VLAPRLEAVHAAAQLLLQDAPEGAVPAAKWFTLEVEGDFIVVRAHASPVLPGNTLRNHLW 511 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 ++ ++TSATL S F SGL +A+ SPF++ QG +V R EP Sbjct: 512 SAVRGAVLTSATLTSCGQFDFFLRESGLFGDEAVTTLAVPSPFDYALQGTLVATETRAEP 571 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQP 568 + + AEM + + G LVLF S M++ +D + T +R +LVQ P Sbjct: 572 R--DAQAFTAEMVDALLSDL-ALVEAGALVLFTSREQMRQAVDMLPTAMRSAVLVQNTLP 628 Query: 569 RYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGE 628 R +L+ HR+RVA G+ S++ G+QSF EGLDL G L + I K+ F P D PV E Sbjct: 629 RPQLLARHRERVAEGQPSIIFGMQSFGEGLDLPGRLCESLFITKLPFAPPDDPVGEARAE 688 Query: 629 WLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 WL+ R PF +P+ + L Q VGR IR+ V YDKRL+ YG+RLL LP Sbjct: 689 WLRGAGRDPFSELVVPATAIRLAQWVGRAIRTEEDRAHVYCYDKRLVRTGYGQRLLQGLP 748 Query: 689 VFPI 692 F + Sbjct: 749 PFAL 752 >UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1WP29_VEREI Length = 664 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 211/705 (29%), Positives = 337/705 (47%), Gaps = 84/705 (11%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLA-IEAPTGVGKTLSYLIPGI 69 +A Y+AL +P F+ RA Q+ MI+ +TL + L IEAPTG+GK++ YLI GI Sbjct: 20 VAQVYRALTSVMPGFVARAQQKTMIS---RTLGLMTRQALGVIEAPTGIGKSMGYLIAGI 76 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKI-----IPDLKFTAAFGRGRYVCPRNL 124 A A E K LVVSTA +LQDQ+ SKDLPL + + + A GR R+ CP + Sbjct: 77 ASAVTEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKM 136 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 A A QDL A DD + R +W G+RD + + W Sbjct: 137 HAFAGGT---QDLFAAGDDHTALTQAVDLWR---------QGQWAGVRDDLPVRLHQRAW 184 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMES--EAVLPDPKN 242 R++ ASC + C + CP++ + ++ A V++ NH +++ + + +V D Sbjct: 185 MRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFSDGHK 244 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 L V DE HHL D +A RL L F V + Q P + E Sbjct: 245 CLFVFDEAHHLSDKLLNAFA---------RRLDLAAFPSEVIEAIAQLCPGMVGLDFAAE 295 Query: 303 RLNA---HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 R+ CE+ A+L + G ++HRF + E+P + + L L L Sbjct: 296 RVRGIWRACED-----AALTML-------GDGSQHRFTLNEVPPQFRRL---LLDLKAQL 340 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ--------- 410 G+ L E S+ R N+A+ M A S++ +L+ Q Sbjct: 341 SGMRA----TLKEVKESNARFR--------NKAVAML-ADSRIGQLSGDVQEAIDCIEEF 387 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 + V +W R G+ + +C + + + LW + ++TSATL +L SF Sbjct: 388 TGDDLVARWLAR----GRNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATLTTLGSFEP 443 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ-V 529 ++ GL + + LDSPF++ + ++++PR+ VE S + H +AAF + + Sbjct: 444 MRIALGLPAETST--LKLDSPFDY-GRARLIVPRLCVEAS---DPAHSRMVAAFLKDHAL 497 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVL 588 + KH G+LV F S + M + + T R +L+QG + ++E H++R+ G RS++ Sbjct: 498 GAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVRSII 557 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 GL S EG+DL G+ ++V + ++ FP D PV+ T E+L+S + PF + ++P Sbjct: 558 FGLDSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPKVGL 617 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 Q GRL+R WGE + DKRL +K YG +++ + P +E Sbjct: 618 KFAQVAGRLMRREQDWGEFYVLDKRLRSKRYGAQIVKSTPFRTME 662 >UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB0_SEBTE Length = 832 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 216/751 (28%), Positives = 358/751 (47%), Gaps = 81/751 (10%) Query: 1 MALTAALKAQIAAWYKAL---QEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTG 57 ++L +K I ++ L +++ PDF R Q +M D+ K+L E + IEA TG Sbjct: 109 VSLKKHIKIDIDKYFGDLGIIRKKYPDFEIRDEQYKMSKDIEKSL--NENKKALIEAGTG 166 Query: 58 VGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRG 116 GKTL+YLIP + A E ++ST + LQ+Q+ +KD+PL+K++I D K+T GRG Sbjct: 167 TGKTLAYLIPTLEYALENNLKAIISTNTINLQEQLINKDIPLVKELIGQDFKYTLVKGRG 226 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 Y+C R L E + D E+ N Q+ +T K+ G R+ Sbjct: 227 NYLCKRKLQNAIMEESDDSE-----DKEILLNLQKWN----------ETTKY-GDRNELR 270 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESE 234 I ++W +++ + C N C Y+ C FF AR+EI +++++V NH + A ++ SE Sbjct: 271 YGISFEIWEKVNCELDLCTNVKCPYFSSCYFFNARKEIGKSDLLVLNHHMFFADLSIRSE 330 Query: 235 -------AVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWY-RLQLDLFTKLVATC 286 ++LP+ +L+ DE H++ D AR ++E++ + +L +++ K V Sbjct: 331 IGFNTDYSILPNYD--ILIFDEAHNIEDTARSYF--TSEVSKYSFGKLMGNIYNKRV--- 383 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNN-----ILNLYMPAGQEAEHRFAMGEL 341 + I A+ + EE YE+I + LN Y E RF +G Sbjct: 384 -RNYNKSGIFVRALIYLKDNLSEEEYEIIDKVKEEEIIENLNKYYDKIIEIFDRFLLGFS 442 Query: 342 PD-EVLEICQRLAK--------LTEMLR------GLAELFLNDLSEKTGSHDIVRL---H 383 D E +EI +R K E+++ L + + L++ T D RL + Sbjct: 443 KDSEQMEIKKRFDKDYIKSSSLWKEIMKLRKESVHLYSIMIKGLTKLTNEIDKFRLEDEN 502 Query: 384 RLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQ 443 +I + + + K L + S W R+G + ++ V+D Sbjct: 503 GIIFDFKKYIERVKVFMK--DLLYILDSDQEDHVYWTNINLRKGSIRIY--ATPFEVADD 558 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIP 503 LE L+ + I+ TSATL F ++ GL EK G +DSPF++ +Q K+ IP Sbjct: 559 LEHNLFNKMDRILFTSATLAVEQKFDYYKKNIGL-EKKGIIEEIIDSPFDYEKQMKVYIP 617 Query: 504 RMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRL 559 +P N + +++ F +K V + K L LF S ++ + + + Sbjct: 618 DDTKDP---NSLEFFSDVYDFIKKLVINTKGRCFL-LFTSYSSLNFIYNKIRGELEKMGY 673 Query: 560 MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPID 619 LL QG+ PR+ ++EL + R ++++L G SF EG+D++GD L V I K+ F + Sbjct: 674 TLLKQGELPRHEMIELFKIR----DKAILFGTDSFWEGIDVQGDSLKSVVIVKLPFKSPE 729 Query: 620 SPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 PV E+++ N+ PF +P A Q VGRLIRS G V I D R++ K Y Sbjct: 730 DPVTEAIIEYMRKNNQNPFMNYQIPQAVIKFKQGVGRLIRSKTDTGIVTILDNRVIKKAY 789 Query: 680 GKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 G++ L +LP I + E I+K++++ KS Sbjct: 790 GEKFLKSLPKTSIIRGN-REYILKEEKRVKS 819 >UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW80_HALOH Length = 822 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 195/712 (27%), Positives = 353/712 (49%), Gaps = 87/712 (12%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 +L + + D+ R Q +++ +V + E IEA TG GK+ +YL+P + A++ + Sbjct: 135 SLSQFLNDYEYREQQLEVVREVINSFNNHE--FTLIEAGTGTGKSFAYLVPALFWAKKNE 192 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 KT+VVST + LQ+Q+ KDL LLKK + D K GR Y+C R + L +Q Sbjct: 193 KTVVVSTNTINLQEQLIYKDLVLLKKALSFDFKAVMVKGRSNYICKRKIKHL------EQ 246 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 +L + DD+ E+Q + K+ L+ K G + + +D+++W ++++ CL Sbjct: 247 ELNNYFDDD-----PEKQVQFYKVLDWLEESK-SGSKSELNFVVDNEIWNEIASETDLCL 300 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESE------AVLPDPKNLLLVL 247 NC ++ C F AR+E+ A++++ NH L+++ ++SE +LP N L++ Sbjct: 301 RTNCPFFDTCYFMKARKEVFSADILIVNHHLLLSDIMLKSEYSERDGGILPRYSN--LII 358 Query: 248 DEGHHLPDVARDAL----------EMSAEITAPWYRLQL--DLFTKLVATCMEQFRP--K 293 DE H+ ++A L + ++ P RL L + + AT ++ + K Sbjct: 359 DEAHNFDEIASRHLGRPFYYKLLHKYLNKVYYPKNRLSLIPRIRNRFSATNLKNKKEVLK 418 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 I +P+ E+ +E LN +N Q+ E + L +++E + + Sbjct: 419 IIDTEIVPQVKRVE-EQSHEYFQKLNEFVN------QDGE---GVIRLTQDIIE-GEAYS 467 Query: 354 KLTE----MLRGLAEL--FLNDLSEK---TGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 K+ + +L L L +LN+L E+ S DI LI+++ + + +K Sbjct: 468 KIVDSGDTLLGNLNNLGIYLNNLYEEFMTLNSSDISNFEELIIELEAYINRCQHFAK--- 524 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 SL + A + E++ L++ ++VS+ ++++LW ++ ++I+TSATL Sbjct: 525 --SLEFNIKAEEENYVFWIEKDYNLNVKQENAPLKVSNIIDKILWETMDNVILTSATLTV 582 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 ++F+ + + G+ + + + ++SPFN+ EQ ++I + P+ N ++++ +A Sbjct: 583 NDNFNYFKTILGINKCSQ---LKIESPFNYSEQATLIISD-DIPPA--NSKKYLP-VATD 635 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVT--------DLRLMLLVQGDQPRYRLVELH 576 K++ LVLF S L+Y T D +++L QG PR ++E Sbjct: 636 ILKEMLLLLRGSTLVLFTS----YSMLNYCTKKIEPVLKDDGIVILPQGRYPRKYILETF 691 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 + AN + V+ G SF EG+D+KGD L + + K+ FP PV E LK + Sbjct: 692 K---ANSNQ-VIFGTMSFWEGVDIKGDDLRYLVMMKLPFPVPTEPVSAARMEQLKEEGKN 747 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 PF SLP+A Q GRLIRS G+++ D R+ TK+YG+ L+++P Sbjct: 748 PFTNFSLPNAVIRFKQGFGRLIRSSKDTGKIICLDSRIKTKSYGRVFLNSIP 799 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 203/735 (27%), Positives = 343/735 (46%), Gaps = 90/735 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 E+ P++ R Q M +V +L + RHL IEA TG GK+L YLIP + +++ Sbjct: 253 FMEKYPNYEEREAQTTMFREVYDSLCSD--RHLLIEAGTGTGKSLGYLIPALYYGIQQES 310 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +VVST + LQ+Q+ +D+PLL++I+P D + + GRG Y+C R ++ +D Sbjct: 311 KIVVSTHTINLQEQLRQRDVPLLREILPFDFRASIFKGRGNYLCLRKF----ESKINAKD 366 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 L+A +DD +T +Q GD + + D W +++D SCLN Sbjct: 367 LVAPIDDAITA-SQMVVWLSETETGDQEELNFGNK--------GSDFWSTVASDADSCLN 417 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV 256 R C +++ C + A+ E A+V + NH+++ ++++ L P L++DE HH+ +V Sbjct: 418 RQCPWFKRCYYHRAKHESNIADVCITNHSMLFTDVQADHRLL-PSYSHLIIDEAHHVEEV 476 Query: 257 ARDALEMSAEITAPWYRLQLDLF--TKLVATCMEQFRPKTIPPLAI------PERLNAHC 308 A L M QL+ F T + R +P L + ER+ A Sbjct: 477 AGKHLGM-----------QLNYFSLTHQTTRLFKDARSGLLPALRLRLQQEDDERVQAWT 525 Query: 309 EELYELIASLNNILN--------LYMPAGQEAEHRFAMGELP------------DEVLEI 348 E + +I ++ LY G+ E G+ D+VL I Sbjct: 526 ETIDTVIPVFQDVKEHWDKLFELLYAFVGESGEAGNDNGQAVCRLRSDTPPKGWDDVLTI 585 Query: 349 CQR----LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 L+++ + + +A + L +++ I L+ ++ + R + L Sbjct: 586 ENNVHTELSRVVKTVDKMATDIKDRLDDQSIQGLITDLNGVVRDLTR------VKDDLRT 639 Query: 405 LASLAQSSGAPVTKW--ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 + Q+S W A+ R +HL+ V + VS QL++ + II+TSATL Sbjct: 640 FLKMEQNSEV---YWIEASTTYRYRSVHLY--AVPVDVSKQLQQYFFDVKDSIILTSATL 694 Query: 463 RSLNSFSRLQE---MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSID---NEEQ 516 SF +E + G +E + V L SPFN+ EQ ++IPR P++ + Q Sbjct: 695 SVHKSFQYAEEQLGLEGFEENNRLKTVQLPSPFNYREQALVIIPRNF--PTLKGSAGDPQ 752 Query: 517 HIAEM-AAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYR 571 I+ + ++ VE+K MLVLF S R +++ + + + + +L QG R Sbjct: 753 FISMLVSSLADSAVETKGR--MLVLFTSYRMLKQVYEPLKEALMGSGIQVLGQGIDSGNR 810 Query: 572 LVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 +L R R +VL+G SF EG+D+ G+ L+ + I ++ F P + P+V + E L+ Sbjct: 811 -TKLTR-RFTQQPETVLLGTSSFWEGVDIPGEALTCLAIVRLPFQPPNHPLVEAKSELLQ 868 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 + PF S+P A Q GRL+R+ G V+IYD R++ YGK L +LP Sbjct: 869 KQKQNPFMKLSIPQAVIRFKQGFGRLVRTAKDKGIVIIYDTRVIDTYYGKHFLYSLPGPK 928 Query: 692 IEQPEVPEGIVKKKE 706 IE + + + + +E Sbjct: 929 IETMHIDQMVPRMRE 943 >UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3_9BACT Length = 661 Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 202/697 (28%), Positives = 313/697 (44%), Gaps = 96/697 (13%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 +F R Q++M VA L+ E RH+ IEA TGVGK+L+YL+P + A E +K VVST Sbjct: 32 NFEYRREQQEMAVSVATALS--EQRHVVIEAGTGVGKSLAYLVPAVLWALEHKKKAVVST 89 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEPTQQDLLAFL 141 + LQ+Q+ KD+P+++K++P ++F A GR Y+CP L + +A Sbjct: 90 YTINLQEQLVYKDIPIVQKVLP-VEFEAMLWKGRANYICPLRL----------ERAIAHA 138 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKW-----DGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + T Q E +R ++W DG + D +W ++ +++ C Sbjct: 139 QELFTSPEQAELQRI---------WEWAQTTQDGTLSDFSVEPDSSVWAQVCSEQHICTT 189 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK------NLLLVLDEG 250 ++C +C + AR+ + A+VVV NH L + A + + N ++ DE Sbjct: 190 KSCGNNPKCFYQRARKRLLTADVVVMNHTLFFLNLGGIAEQEENESGYLFANDFVIFDEA 249 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H + VA + + Y LQ + PKT L R +E Sbjct: 250 HTVEQVAAKQIGLGVSQYGLRYALQ------------RLYNPKTKKGLFQVHRNPNAVKE 297 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE-ICQRLAKLTEM----LRGLAEL 365 LI +++ + G + R PD V++ + LAKL +M LRG+ Sbjct: 298 TATLIEEVDSFFDKLGERGDFKKGREYRVRQPDIVMDSLTAPLAKLQQMVVETLRGIE-- 355 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMF---EAQSKLWRLASLAQSSGAPVTKWATR 422 +DL G ++ L R I A+ F EA+ ++ W + Sbjct: 356 --DDL----GKAELQDLGRRIRDARSAIATFLKQEAEDHVY---------------WIEK 394 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN-SFSRLQEMSGLKEKA 481 + Q H H + V+ L LL+ I+TSATL N + + + G E Sbjct: 395 TGKTQQYHA-LHAAPVDVAAYLRALLFPEGKCCIMTSATLSVGNEALTYFRNRVGADEVE 453 Query: 482 GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 + + SPF++ Q KI + R +P E +AE F + + VLF Sbjct: 454 ARQ---IGSPFDYERQMKIYVTRKMPDPRDSGYEAALAEQIEHFVGMSKGRA----FVLF 506 Query: 542 ASGRAMQRFL----DYVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAE 596 S +AM + + DL LLVQG+ PR+RL+ +K ER VL G +SF Sbjct: 507 TSYKAMTNLASALRERLDDLDYKLLVQGEGLPRHRLISEFKK----DERHVLFGTESFWS 562 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D+ G+ LS V I ++ F D P++ E +++ F SLP A L Q VGR Sbjct: 563 GVDVPGEALSNVIITRLPFAVPDHPLIEARLELIEANGGDAFAEYSLPEAILKLRQGVGR 622 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 LIR+ G VVI D R+LTK+YG+ + ALP P+E Sbjct: 623 LIRTKQDQGIVVILDNRVLTKSYGQAFMRALPKCPVE 659 >UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXI2_STRM9 Length = 667 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 199/702 (28%), Positives = 320/702 (45%), Gaps = 70/702 (9%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 DF R Q M + K + + + +EA TG GKTL YLIP I A E K +V+ST Sbjct: 14 DFEKRENQINMSKIIKKGIDND--MPVLLEAETGSGKTLGYLIPAIDFALTEMKNIVIST 71 Query: 84 ANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 + LQDQI +K+LPLLKK+ + +K+T GR YVC R L QDL+ D Sbjct: 72 NTLNLQDQILNKELPLLKKLFGEKMKYTLIKGRNNYVCKRKL----------QDLVMKSD 121 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYY 202 DE + E K A L GD K+ I +DLW + +DK S C YY Sbjct: 122 DEKYMDLIEAVK--ASLTGDRSDIKY---------KISNDLWNEIKSDKDSTFANKCPYY 170 Query: 203 RECPFFVARREIQEAEVVVANHALVM---AAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 + C F+++R + + + + NH +++ ++ V PK L+V+DE H+L +V R Sbjct: 171 KSCYFYLSRSKNEHCNIFIVNHHILLLDHIIKQNNNVGLIPKYDLIVIDEAHNLENVVRK 230 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH-CEELYELIASL 318 +S + + + L++ V I + I E N +EL E+ S Sbjct: 231 YYSLSFSFKEVFKIIGM-LYSNNVKDIENAGLIGKI-IINISENSNHFLIDELKEIFFS- 287 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 NI N+Y +A+ EL +++ L + + + + +L +NDL EK S + Sbjct: 288 -NINNIY----------YALVELRKKIVRKYTDLNQNGILTKDICDLNVNDLLEKIFSSN 336 Query: 379 IV---RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW--- 432 ++ ++RLI + + + +L+ +S T E + W Sbjct: 337 LILKKEVYRLINFLEERDELDKDNLRLFLSSSYNNLEEHLNTLQEIFELNYEKYIYWMNL 396 Query: 433 --------FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + +S + I +I+ SATL NSF ++ G+ + + Sbjct: 397 DIDNVFPIINATPYSISKEFGENFIEKIRKVILISATLTVGNSFRYIKNSLGIIDSVEEN 456 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + S F++ I +P P+ E E A F K + VLF S Sbjct: 457 ---IPSEFDYLNNMNIYLPDNLPLPN----EIDFNERATKFILDYAEKNNGKCFVLFTSY 509 Query: 545 RAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 + ++ +Y+ L +L+QG+ L+++ +++ E S+L+G SF EG+D++G Sbjct: 510 KDLKFVANYLNKYSSSLNVLIQGEYEIIELIKMFKEK----ENSILLGTYSFWEGVDVQG 565 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN-RYPFEVQSLPSASFNLIQQVGRLIRSH 661 + LS V I K+ F D P+V + L LN F+ LP A + Q VGRLIRS Sbjct: 566 EALSNVIIFKLPFQVPDDPIVSSICYRLNELNSNSAFKEFQLPYAVLKMKQGVGRLIRSK 625 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVK 703 G ++I DKR+ K+YGK +L +LP IE + + ++K Sbjct: 626 EDKGNIIILDKRIHKKSYGKIILKSLPKGNIEILSIEDILLK 667 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 194/719 (26%), Positives = 331/719 (46%), Gaps = 111/719 (15%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L+ ++ + R Q QM V ++L G H+ IEA TG GK+ +YLIPG+ +++ K Sbjct: 246 LENKLKSYESRLGQLQMAKAVGESLTG--STHIVIEAGTGTGKSYAYLIPGLWWSKKTGK 303 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPR--NLTALASTEPT 133 +VV+T + LQ+QI+ KDLPLL +++P F A G+ Y+C + + T + E Sbjct: 304 KVVVATHTIPLQEQIFKKDLPLLAQVLP-FSFRGALLKGKSNYICLKRWSFTLGVTAELA 362 Query: 134 QQDLLAFLD-----DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + LA L E T + +E + L + LW L+ Sbjct: 363 PGERLALLSVMVWLRETTTGDWQEVSQIPSL---------------------NKLWGSLN 401 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVL 247 ++ SC+ C + C +R+ +EA++++ NH+L+ + +++E +LP+ L ++ Sbjct: 402 CEEESCIPGKCSHANRCYMLQSRKRAEEADLIIVNHSLLFSDIKTEKNILPEYHEL--II 459 Query: 248 DEGHHLPDVARDAL--EMSAE------------ITAPWY---RLQLDLFTKLVATCM-EQ 289 DE HHL A + L E+S E + +Y + + ++ +L++ + E+ Sbjct: 460 DEAHHLHQAALEQLGNEISLEQISRVLNLLSRSMAGSFYGNVKARAQVWERLLSVALWER 519 Query: 290 FRPKTIPPLAIPERLNAHCEELY----ELIASLNNILNLYMPAGQEAEHRFAMG------ 339 FR E+L C+ELY EL A+ I+ G E +R + Sbjct: 520 FR-------GYLEKLPEACDELYQQAEELFATFAQIV------GNELSYRLTVHCHQESW 566 Query: 340 --ELPDEVLEICQRLAKLTEMLRGLAELF--LNDLSEKTGSHDIVRLHRLILQMNRALGM 395 + ++ + RL +T++L+ + L +D +H+I R + +M + Sbjct: 567 WPTVAVQIENLLGRLKIITDLLKAMLNLLDAQDDEDSAALAHEISGRIRNLEEMRECFVL 626 Query: 396 FEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHI 455 + + R++ L QS+ + + VS+ L+ L+ + Sbjct: 627 AQQVDQPTRVSWLEQSN-----------------RILLKTSPVDVSNLLKEKLFAPLDCA 669 Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 ++TSAT+ NSF GL E V DSPF++ Q ++++ + V+ + + + Sbjct: 670 VLTSATISIANSFQHFLREIGLDESTPSLLV--DSPFDYERQMQLLVVKDLVD--VKHCD 725 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR----FLDYVTDLRLMLLVQG-DQPRY 570 E A F +V + LVLF S R ++ Y+ + LL QG D R Sbjct: 726 LFNTEEVALFISEVTERMQGRTLVLFTSHRFLREIHLPLSRYLGGSGIELLAQGIDGGRQ 785 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 ++E N RSVL+G SF EG+D+ GD LS V + K+ F P + P++ E+L Sbjct: 786 AILE----AFLNNSRSVLLGASSFWEGIDIPGDALSCVILVKLPFGPPNRPLIAARSEYL 841 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 ++ R PF LP A Q GRLIRS G V++ D R++ K YG+ L +LPV Sbjct: 842 EAQGRNPFYEFLLPEAVLRFKQGFGRLIRSKSDRGLVILCDGRVIHKRYGRHFLSSLPV 900 >UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIX1_9BACT Length = 644 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 188/681 (27%), Positives = 308/681 (45%), Gaps = 75/681 (11%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR--EEQKTLVV 81 DF R Q M + V L+ EG +L +EAPTGVGK+++YL+P + R E+ K +++ Sbjct: 15 DFERRPQQETMASKVYYALS--EGLNLCVEAPTGVGKSIAYLLPAVKWHRNTEQTKPIII 72 Query: 82 STANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 +T LQ+Q+ KD+P ++ ++ D GRG Y+C R + A A+ P D L Sbjct: 73 TTHTKHLQEQLLKKDVPAVQLMLGEDFNAVIGMGRGNYICMRRMNAAAAGSP---DFLP- 128 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 D+ + P ++K T + +G + A+D+ W ++ ++ +CLN+ C Sbjct: 129 -DESMIP-------EVFRIKSWSATSE-NGCKTELPFAVDNGAWGTVNAEEGNCLNQRCP 179 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD------PKNLLLVLDEGHHLP 254 +++ C F +RR + A+V++ NHAL A + +A D P +++DE H + Sbjct: 180 HFKPCFFQKSRRSLYGADVIIVNHALFFADLAIKAETGDEQAGILPSASAIIVDECHTVE 239 Query: 255 DVARDALEMSAEITAPWYRLQLD-LFTKLVATCMEQFRPKTIPPLAIPERLNAH-CEELY 312 DVA A+ + ++A + QL ++ K R K + + H +++ Sbjct: 240 DVA--AVHLGIRLSAGTFLYQLRRIYNK---------RSKRGAISTVSDNRGRHLAAKMH 288 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 + + L+ ++P + HR +P+ LA+ L GL EL+ ++ Sbjct: 289 DEVRDFFQSLHAWLP-DENKTHRIHEPVVPE------NPLAEGLTQLCGLLELYADEEEG 341 Query: 373 KTGSHDIVR-LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 R L R +L++ +L F ++S W + + HL Sbjct: 342 NPEKETEYRSLSRRLLKLTDSLSFF------------LRASSEEHVFWFEKSTK----HL 385 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 H I V+ L LL+RS ++ TSATL S + G+ E + LDSP Sbjct: 386 SMHAAAIDVAPILNDLLFRSKTPVVTTSATLAVSEKLSYYRSRVGMSESLD---MILDSP 442 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F+ Q K+ + P ++ E+ +F G VLF S M+R Sbjct: 443 FDFKNQMKVFAAQTLPSPKENDYEKEALTWLRYFIHMSTG----GAFVLFTSFSQMKRIA 498 Query: 552 D----YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 D ++ ++ L LLVQG+ L+ K N SVL G +F G+D+ G+ L Sbjct: 499 DAVRPFMNEMGLKLLVQGEAASSALLLQAFKEDNN---SVLFGTDTFWTGVDVPGESLRN 555 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 V I +I F D P++ E L+ F S+P A L Q +GRLIRS G V Sbjct: 556 VIIMRIPFAVPDHPLIAARCEHLEKTGGRAFFDFSVPEAQLKLRQGIGRLIRSAKDRGIV 615 Query: 668 VIYDKRLLTKNYGKRLLDALP 688 V+ D R+ NYG + L A+P Sbjct: 616 VLMDSRVSNTNYGAKFLRAMP 636 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 209/742 (28%), Positives = 336/742 (45%), Gaps = 108/742 (14%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L+E +P + R Q M +V + L ++ +HL IEA TG GK+L YL+P I + ++++ Sbjct: 254 LKETLPHYESRDAQDMMFQEVMQAL--DDNKHLLIEAGTGTGKSLGYLLPSIYQSVKQEQ 311 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVC---------PRNLTA 126 ++VST + LQ+Q+ +D+PLL +++P F AA GRG Y+C R+ + Sbjct: 312 KVMVSTHTINLQEQLRDRDIPLLTQVVP-FPFKAAIFKGRGHYLCLRKFEHKINRRDFHS 370 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 T +L +L T N +E+ G D W Sbjct: 371 PKEDVITAAQMLVWLTQ--TENGDDEELNLGGRGG--------------------DFWET 408 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 +S+D SCL R C ++R+C + A+ E A+VV+ NH+ + +++ L P LV Sbjct: 409 ISSDSDSCLGRACPWFRKCYYHRAKHEAGIADVVITNHSKLFTDVKANHQLL-PSYERLV 467 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRL----------QLDLFTKLVATCMEQFRPKTIP 296 +DE HHL DVA L + + + + L QL +L+ + K + Sbjct: 468 IDEAHHLEDVAGKHLGLQMKYFSVVHTLTRLYKDSRSGQLPALRQLLQASPHE---KAVE 524 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 ++ +RL + E L++ L +P +A P + + RL+ L Sbjct: 525 WSSVIDRLYPDLITVKENWDRLSDQLFGLLPERGDAS--------PGDAGQFSLRLSPLK 576 Query: 357 EM--LRGLAELFLNDLSEKTGSHDIVRL-HRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 + +AEL + + G D+VR +LI +M L + A S L L+ L + Sbjct: 577 KPKDWDSMAEL-EHQIHLTLG--DVVRKGDKLIAEMKEDLDDYSADSLLTDLSGLFKDLA 633 Query: 414 A--------------PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 A W L + V + VS L+ L + +I+TS Sbjct: 634 AHREDLRSFMALNDEGTVYWMEANGNFRSKSLQLYAVPVDVSSHLKELFFDKKQSVILTS 693 Query: 460 ATLRSLNSFSRLQEMSGLKE--KAGD-RFVALDSPFNHCEQGKIVIPR--MRVEPSIDNE 514 ATL SF + E GL+E +AG+ V L SPFN+ EQ +V+PR V+ S+ + Sbjct: 694 ATLSVDKSFQFMIENLGLQEAAEAGNLNTVQLPSPFNYREQALLVVPRDFPSVKGSVGD- 752 Query: 515 EQHIAEMAAFFRKQVES------KKHLGMLVLFASGRAMQR----FLDYVTDLRLMLLVQ 564 A F V+S H MLVLF S R +++ + + + +L Q Sbjct: 753 -------ALFVNTLVKSLADTAVATHGRMLVLFTSYRMLRQVHEPLKEALASSDITVLGQ 805 Query: 565 G--DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 G R +L+ +R + SVL+G SF EG+D+ G+ L+ + I ++ F P + P+ Sbjct: 806 GMDGTSRTKLI----RRFQDSSASVLLGTSSFWEGVDIPGEALTCLAIVRLPFQPPNHPL 861 Query: 623 VITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR 682 V + E L+ + PF S+P A Q GRL+R+ G V++YD R++ YGK Sbjct: 862 VEAKSELLQQQKKNPFMKLSVPQAVIRFKQGFGRLVRTAQDKGIVIVYDTRVIESYYGKY 921 Query: 683 LLDALPVFPIEQPEVPEGIVKK 704 L +LP +E EGIV + Sbjct: 922 FLYSLPGPKMEHMPT-EGIVPR 942 >UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZI1_9PLAN Length = 666 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 194/696 (27%), Positives = 303/696 (43%), Gaps = 82/696 (11%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ---- 76 ++P + R Q + +AK LA GRHL EA TGVGK+ +YL+P I A +Q Sbjct: 16 RLPGYEHRPQQLDLSGGIAKALAA--GRHLVAEAGTGVGKSFAYLVPAILHATSDQAENA 73 Query: 77 -----------KTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRN 123 K +V+ST ++LQ+Q+ +KDLPLL+ +IP +FTA GRG YV R Sbjct: 74 QASEGDEEGPRKRIVISTHTISLQEQLLAKDLPLLRSVIPR-EFTAVLVKGRGNYVSLRR 132 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L A T + +EE ++ L L D T I + Sbjct: 133 LQYAAERART------------LFSTEEEFEQVRDLVAWSKETGGGSLSDMT-IKPKSTV 179 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME----SEAVLPD 239 W +++D +CL RNC Y EC ++ ARR + A+++V NHAL + + ++LPD Sbjct: 180 WDEVASDSGNCLGRNCPTYSECFYYRARRRVHHAQILVVNHALFFSDLALRRVGASILPD 239 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 +LDE H + VA D L +S Y L ++L + +T L Sbjct: 240 YD--AAILDEAHTIEQVAGDHLGLSITSGQIQY-----LLSRL-------YNDRTNKGLL 285 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM- 358 + +L + + + ++ + Q+ +H+ PD+V + Sbjct: 286 VSRKLTTAQQLVMQCYLRADDFFHDCATLAQQRDHKNGRIREPDQVDNLLSPSLLKLSRE 345 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 +R E ++D SE+ L L + + W ++Q + V Sbjct: 346 VRRCGEQ-IDDESERQN----------FLSAADRLQLISGEISHW----ISQDTAGSVYW 390 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS-LNSFSRLQEMSGL 477 + + R G+ + I V L L+ +I+TSATL + SF + GL Sbjct: 391 ISQQASRAGKPRVELSAAPIDVGPALREHLFEKTRSVILTSATLATGKGSFDYYKSRIGL 450 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 + R + SPFN+ EQ ++++ +P + ++ +A R + H Sbjct: 451 TQSDAIR---VGSPFNYREQAQLILVSGLPDPGSEKDKFEVAAAEQMKRYIERTDGH--A 505 Query: 538 LVLFASGRAMQRFLDYVTDL----RLMLLVQ-GDQPRYRLVELHRKRVANGERSVLVGLQ 592 VLF S ++R +T L L Q G +PR +++ R R VL+G Sbjct: 506 FVLFTSYAHLERTASLLTRFLAENNLALYSQAGHEPRTQML----ARFKENPRGVLLGTD 561 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF +G+D+ GD L V I K+ F D P++ E ++ PF LP A L Q Sbjct: 562 SFWQGVDVPGDALQNVIIPKLPFSVPDQPLLEARLEAIRESGGNPFRDYQLPEAVIKLRQ 621 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 GRLIRS G VVI D R+ TK YG+ L++LP Sbjct: 622 GFGRLIRSSRDSGMVVILDPRMQTKAYGRTFLESLP 657 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 198/711 (27%), Positives = 317/711 (44%), Gaps = 87/711 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L +P F R+ Q M+ V K L G+ + + +EA TG GK+L+YL+P IA A++ + Sbjct: 245 LATTLPRFRYRSQQCDMMEQVTKGLNGD--KTVLVEAGTGTGKSLAYLVPAIAWAKQNHE 302 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEPTQQ 135 +++ST + LQ+Q+++KD+PLL K +P+ +F +A GRG Y+C R + + Sbjct: 303 RVLISTHTINLQEQLWNKDIPLLAK-LPEYEFKSAIMKGRGNYICLRRWHSFMKEDNHTP 361 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 D AFL L Q KG+L + +++D + W R+ ++ CL Sbjct: 362 DEAAFLAKILIWIYQTNTGD----KGEL-------VLNYSDF----EYWYRVCSESDGCL 406 Query: 196 NRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 C Y++E C F A+R+ + A++V+ NH+L+++ ++ ++ P L++DE HHL Sbjct: 407 GNRCQYFKEKCYFMAAKRKAERADIVIVNHSLLLSDANADNMIL-PSYGPLIIDEAHHLE 465 Query: 255 DVARDALEMSAEITAP--WYRLQLDLFTKL----VATCMEQFRPKTIPPLAIPERLNAHC 308 + A D L + W + L +KL T ++ + +R Sbjct: 466 NCATDHLGRAVTRVGVLRWLAVATKLLSKLEKIAFLTIDGRWEKLLLQSSETKQRTREAA 525 Query: 309 EELYELIASLNNILNLYMPAGQEAEHRFAMG----ELPDEVLEICQRLAKLTEMLRGLAE 364 +E+ +L+ I ++ RF G +P + + L L LR L + Sbjct: 526 TSFFEM--ALSWIKSIDRNGEGRCSMRFDRGGNIDGIPSIPVAVDAELDNLLVNLRTLCQ 583 Query: 365 LFL---NDLSEKT----GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 + + L E T G I+R L AS+ Q + Sbjct: 584 ALVKISDQLEEGTVITGGGPGIIR-------------------DLAAWASVGQELSDNL- 623 Query: 418 KWATREEREGQLHLW-----------FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN 466 +W R + E Q++ W F I V L L+ +++TSATL Sbjct: 624 EWICRHQEESQVY-WVEGGGDSPEVVFRSAPIDVGPLLYEKLFSENRPVVLTSATLSVDG 682 Query: 467 SFSRLQEMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPS-IDNEEQHIAEMAA 523 +F GL + + L+SPFN+ EQ + + R + P + N+E H A Sbjct: 683 NFKHYINSVGLDFLPQENILEKHLNSPFNYNEQAILCVARDILPPGQVSNKEYHDELSKA 742 Query: 524 FFRKQVESKKHLGMLVLFASGRAM----QRFLDYVTDLRLMLLVQG-DQPRYRLVELHRK 578 F + ++ LVLF S R++ QR D + + LL D R RLVE Sbjct: 743 IFHISMAAEGR--SLVLFTSHRSLRETYQRLKDQYENEDICLLGHELDGSRRRLVE---- 796 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 + G R+VL G SF EG+D+ G+ LS V I K+ F P + PV + L R F Sbjct: 797 QFMEGRRTVLFGASSFWEGVDIPGEALSCVIIVKLPFAPPNHPVTEARLQKLSRQGRNGF 856 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 +P A Q GRLIR G VV+ D RL+ K YG + ++LP+ Sbjct: 857 MEHQIPQAVIKFKQGFGRLIRGPEDRGVVVVLDGRLVEKRYGYKFFNSLPI 907 >UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacterium RepID=C3WBH3_FUSMR Length = 823 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 185/720 (25%), Positives = 317/720 (44%), Gaps = 74/720 (10%) Query: 7 LKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +K IA +++ L + F R Q M + K L E + +EA TG GKTL+ Sbjct: 118 IKIDIAPYFEKTGLLSQAFKGFEYRDEQLHMATHIEKGLNSE--TPVIVEAGTGTGKTLA 175 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPR 122 YLIP I A + +K +V+ST + LQ+Q+ +KD+P+ K++I D K+ GRG Y+C R Sbjct: 176 YLIPSIEWAIKNKKRVVISTNTINLQEQLLNKDIPIAKRVIQGDFKYILVKGRGNYLCNR 235 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 + + + L ++LT + + + K +T G + D+ Sbjct: 236 KYHNVVMGDKS-------LLEDLTTSQKNQFAEIIKWGNQTET----GDKAELTFEADNT 284 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESE------ 234 +W ++ C C Y EC F +R E ++A++++ NH + + A+ E Sbjct: 285 IWELFQSETDMCSGNKCPYKNECFFLKSRDEKKKADILITNHHMYFSDLAIRKEIGFNTE 344 Query: 235 -AVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLF--------TKLVAT 285 ++LP+ L+V DE H++ VARD A + + +F T + + Sbjct: 345 YSILPEYG--LVVFDEAHNIEKVARDYFSYEAS-KYSFTKTMNQIFITEGKKKNTGALDS 401 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH---RFAMGELP 342 ++ + + + I ER EE+ SL Y+ + H F+ GE+ Sbjct: 402 VLKHIKSEELDNHGILER---EIEEIKLKHKSL------YIAGREYFNHIIEVFSKGEMG 452 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR--LHRLILQMNRALGMFEAQS 400 + + + L L + LSE + VR + L + +RA + + Sbjct: 453 TFTFRARKEEIENSPFLNTLNDFKDKFLSEYNSYNRKVRELIKELKDEEDRAGYINDFSK 512 Query: 401 KLWRLASLAQS-------SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP 453 + R+ + S W R+ L +++ +L++ L+ ++ Sbjct: 513 YIDRIDGFINNFRFIHDFSDEEFIYWIEVNSRKSNSKLV--ATPLKIDGELQKNLYLNLN 570 Query: 454 HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 II TSAT+ N F+ +E GL + D+ + SPF++ Q K+ IP PS Sbjct: 571 QIIFTSATIAIGNDFTYFKESIGLDKNTLDK--VIHSPFDYDNQMKVYIPNDIPNPS--- 625 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPR 569 ++ I E++ + + Q+ + VLF S + + + D + L + G PR Sbjct: 626 DKNFIDEISEYLKTQLIVSRGKA-FVLFTSYQTLNYVYYMIRDELEANGIELFIHGMAPR 684 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 +LV ++ NG+ VL G SF EG+D+KG LS V + K+ F PV E Sbjct: 685 SQLVNMY----INGKNPVLFGTDSFWEGVDIKGHQLSNVILIKLPFKVPSDPVTEAIIEH 740 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 + + + F +P A Q +GRLIRS G + I D R++TK YGK +D++P Sbjct: 741 ITAQGKNSFTEYQIPEAVIKFKQGIGRLIRSKTDSGTITILDNRVITKKYGKYFMDSIPT 800 >UniRef50_UPI0001BC908D ATP-dependent DNA helicase DinG n=1 Tax=Pseudomonas syringae pv. tabaci ATCC 11528 RepID=UPI0001BC908D Length = 508 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 164/518 (31%), Positives = 240/518 (46%), Gaps = 53/518 (10%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----EEGRH------LAI 52 ++ LK QI Y E PR QR MIA+VAK L EEGR +A+ Sbjct: 2 ISTELKTQIQGAYSRFLE-AKSLKPRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAV 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKT++Y I I A+ K LV++TA VALQ+QI KDLP L++ + F Sbjct: 61 EAGTGTGKTVAYAIASIPTAKAAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFTFAL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE--LTPNNQEEQKRCAKLKGDLDTYKWD 169 A GRGRY+C L AL ++E ++ QK + L KWD Sbjct: 121 AKGRGRYMCLSKLDALLQESDATNATAQLFEEEGFKIEVDEASQKLFTSMLQKLAGNKWD 180 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 G RD + D W RL+TD + C NR+C +++C F+ AR + + +V+V NH +V+A Sbjct: 181 GDRDSWPQELADQDWARLTTDHSQCTNRHCPNFQQCAFYKAREGMGKVDVIVTNHDMVLA 240 Query: 230 --AMESEAVLPDPKNLLLVLDEGHHLPD--VARDALEMSAEITAPWYRLQLDLFTKLVAT 285 A+ AVLPDP++ L V DEGHHLPD + A + TA W KL+A Sbjct: 241 DLALGGGAVLPDPRDTLYVFDEGHHLPDKAIGHFAHYTRLKSTADWLEQTAKNLAKLLA- 299 Query: 286 CMEQFRPKTIPPL--AIPE---RLNAH-------CEELYELIASLNNILNLYMPAGQEAE 333 + P + L +PE + H CE+L + A + M + Sbjct: 300 --QHPLPGDLGKLIEQVPELAREIKGHQQFMFGACEQLADFRAGED------MQGRERPR 351 Query: 334 HRFAMGELPDEV----LEICQRLAKLTEMLRGLAELFLNDLSEKT----GSHDIVRLHRL 385 HRF G +P+ + +E+ + A+L ++ L EL + + SH + L Sbjct: 352 HRFVGGVIPEHIREMGIELKKGFARLDDLFTRLTELLKEGMDGEVNIGIASHQAEEWYPL 411 Query: 386 ILQ-MNRALGMFEAQSKLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQ 443 + RA G +E LW + + P+ +W T + + + I ++ Sbjct: 412 FGSLLARAHGNWE----LWTAFTAEDPEDSPPMARWLTLADSGAMFDIEVNASPILAAEM 467 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA 481 L R LW +VTSATL +L F R + +GL + A Sbjct: 468 LRRNLWNIAYGALVTSATLTALGKFDRYRMRAGLPKGA 505 >UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteobacteria RepID=A9IIW5_BORPD Length = 693 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 203/703 (28%), Positives = 302/703 (42%), Gaps = 75/703 (10%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L +P + PR Q ++ + + + L EA TG+GKT +YL+P + Sbjct: 16 LASALPGYAPRPAQVELAQAIGRAITDRA--TLVAEAGTGIGKTWAYLVPAFVAGGK--- 70 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQD 136 +++ST LQDQ+Y++DLP ++ + A GR YVC +L L Sbjct: 71 -VIISTGTRTLQDQLYTRDLPRVRAALAAPVTAALLKGRANYVCHYHLDRLQG------- 122 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 DE ++ E + +++ K D + D D+W+R+++ + +CL Sbjct: 123 ------DERALKSRTEISQLRQIQVFAGISKTGDRADLGKVPEDADIWQRVTSTRENCLG 176 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEAV---LPDPKNLLLVLDEGH 251 ++C R+C ARR+ QEA+VVV NHAL MA + E V LP+ + + DE H Sbjct: 177 QDCPRIRDCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLLPEADTV--IFDEAH 234 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR--------PKTIPPLAIPER 303 LPD A L S ++L LD L A + R + + A R Sbjct: 235 QLPDTATRFLGSSVST----HQL-LDFGRALEAAGLAYAREAAKWSDVSRQVETAARELR 289 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEH---RFAMGELPDEVLEICQRLAKLTEMLR 360 L C L +L + PA +A R A+ + + ++ L R Sbjct: 290 LA--CAPLDQLPGRKATFEAIPEPAQFDAALAALRQAVDAATRALGAVAEKHPDLAAAAR 347 Query: 361 GLAELFLN----DLSEKTGS-HDIVRLHRLILQMNRAL--GMFEAQSKLWRLASLAQSSG 413 G AE+ L L + G+ HD R + + G Q+ L L++ A +G Sbjct: 348 GGAEISLRLARWALPAREGAAHDDEGWGRDTHALTQPADDGPAVPQAVLQGLSAAADYTG 407 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 P +W GQ H+ H + V+ R + I+TSATL F Sbjct: 408 -PAVRWV----EHGQHHVRLHSAPLSVAQAFSRFR-KPGQAWILTSATLSVHGDFHHYTS 461 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 GL + R+ +SPF++ QG + +PR EP + AE + Sbjct: 462 QLGLNDARTGRW---ESPFDYTGQGLLFVPRDMPEP----QSPRFAERFVQTLMPLLQAS 514 Query: 534 HLGMLVLFASGRAMQRFLDYVTDL------RLMLLVQGDQPRYRLVELHRKRVANGERSV 587 G LVL + RA+ R + + LL QGD R L+E R E V Sbjct: 515 PGGTLVLCTTLRAVDRVAGLLAEAFEDHGHEWPLLKQGDATRRDLLE----RFCKLEHPV 570 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 LVG SF EG+DL GD+L+ V I K+ F P D PV+ + PF LP A+ Sbjct: 571 LVGSASFWEGIDLPGDVLTLVAIDKLPFAPPDDPVIEARLRACRVRGGNPFAEYQLPEAA 630 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 +L Q GRLIR+ WG +++ D RL+ K YGKRL LP F Sbjct: 631 ISLKQGAGRLIRTESDWGVLMVGDARLVEKPYGKRLWRGLPPF 673 >UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damage-inducible protein G) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXS1_9BACT Length = 847 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 194/737 (26%), Positives = 318/737 (43%), Gaps = 118/737 (16%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L IP + R Q M+ V+ + IEA TG GK+L+YL+P I + + ++ Sbjct: 140 LSVTIPGYEYRESQVDMLTSVSDAFNNDTVA--TIEAGTGTGKSLAYLLPAIFWSVKNKE 197 Query: 78 TLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +V+ST + LQ+Q+ KD+P LK + IP+ K GR Y+C R + Sbjct: 198 RVVISTNTINLQEQLMYKDIPTLKIENIPNFKSVLVKGRNNYICLR-----------KAQ 246 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW-----DGLRDHTDIAIDDDLWRRLSTDK 191 L F D L +++Q + W DG + ++ ++D++W + ++ Sbjct: 247 NLQFEGDMLIEEREKKQL--------IHILSWAEKTRDGSKADLNLLVNDNVWEMVQSEA 298 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---------ESEAVLPDPKN 242 C C +Y +C F+ ARR A+++V NH L+MA + +S A+LP K Sbjct: 299 DQCTRLKCNFYNKCFFYSARRNASSADILVINHHLLMADLVLRKETRGYDSTAILPPFKR 358 Query: 243 LLLVLDEGHHLPDVARDALEMS---AEITAPWYRL--QLDLFTKLVATCMEQFR------ 291 +++DE H+L VA + +S I P +L Q D L+ + + Sbjct: 359 --IIIDEAHNLESVATSNIGLSFSRMRILKPLGKLVNQKDNKKGLLPFLKNKIKDVDFQC 416 Query: 292 --------PKTIPPLAIPERLNAH---CEELYELIASLNN-ILNLYMPAGQEAEHRFAMG 339 + I P + R+ + ++ S+N+ I N ++ G E + R Sbjct: 417 NKDITVDITEGIYPQLLDMRIEIYTCVTNTFSDIFESVNSYINNKFLENGVELKLR---- 472 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 + DE+ L+ +D EK H +H ++ +N+ + E Sbjct: 473 -ITDEL----------------LSTPLWSDSIEKKIRHLCTEIHNFVILLNKLIAAIERL 515 Query: 400 SKLWR--LASL-------------AQS-------SGAPVTKWATREEREGQLHLWFHCVG 437 K R L+SL A++ S + +W + F Sbjct: 516 DKESRDILSSLFIDITSCKTRLNTAKNDLFSFIRSEENLCRWIELRRYNDNFFIKFCNAP 575 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF--VALDSPFNHC 495 I +S+ L+ L+ + II+TSATL N+F+ Q+ +GL R + L SPF++ Sbjct: 576 IDISNALKAYLFDNYRTIILTSATLTIDNTFTFYQKNTGLHLLPEKRITELILSSPFDYK 635 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD--- 552 Q I IP +P ++ + E + + + LVLF S R + D Sbjct: 636 SQSMICIPTDISDPDDSYYKKDLVENLSKLIAITDGRS----LVLFTSYRLLNDIFDMLK 691 Query: 553 -YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 Y T L QG+ R+ L+E + N + S+L SF EG+D+KGD L V I Sbjct: 692 PYFTGQGYTCLKQGEDNRHNLLETFK----NDKTSILFATDSFWEGIDVKGDALECVIIT 747 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 ++ F + P++ E ++ F SLP A L Q GRLIRS G V I+D Sbjct: 748 RLPFKVPNEPIIEARTEAIEMKGGNSFYDYSLPVAVLKLKQGFGRLIRSKEDRGVVFIFD 807 Query: 672 KRLLTKNYGKRLLDALP 688 +R+ TK+YGK + +LP Sbjct: 808 RRIATKSYGKVFIKSLP 824 >UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRT5_HALO1 Length = 729 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 214/714 (29%), Positives = 314/714 (43%), Gaps = 90/714 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L+ P + R QR M VA+ LA + L +EA TG GKTL+YL+P + K Sbjct: 23 LRACTPHYEDRPEQRHMAHAVAEALAHQGA--LLVEAGTGTGKTLAYLVPALL----SGK 76 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRG--RYVCPRNLTALASTEPTQQ 135 +V+ST ALQDQI D+PLL++I+P +FTA +G YVC R L Sbjct: 77 RVVISTGTRALQDQITRNDIPLLEEILP-RQFTAVTLKGVSNYVCVRKL----------W 125 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 D+ A L + P + + + A+ D T L T +A D +W L+ + + Sbjct: 126 DVSARL--AMAPEARRDYQTVAEWARDSPTGDRAEL---TAVADDAPIWAALTNTPDTRI 180 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD----PKNLLLVLDEGH 251 C ++ +C ARR ++A++++ NH L A + + P P+ +V DE H Sbjct: 181 GPRCPFFEQCFITRARRRAEKADLIIVNHHLFFADLSLRSSYPGARVLPEYEAVVFDEAH 240 Query: 252 HLPDV-----------------ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKT 294 L DV ARDA SA P + ++ + + +P T Sbjct: 241 QLEDVMTEHFGVQVSTVRLAQLARDARHSSAGRNGPLFPNAQS--SEKASDDDDSPKPST 298 Query: 295 IPPLAIPERLNAHCEELYE-LIASLNNILNLYMPAGQEAEHRFAMGELP-DEVL------ 346 P ER+ AH E E S+ L PAG G +P D+ L Sbjct: 299 RPMETSTERIIAHLERCAEGFFISVRAALR-ESPAGDG-------GRVPLDDSLFADSDR 350 Query: 347 -EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHR----LILQMNRALGMFEAQSK 401 E RL + L A L ++L+ + + + AL +++ Sbjct: 351 QEAWFRLDSALDELAAHATLRADELASDSAEAAAYAIGEDNPGNADERAEALAAVAVRAE 410 Query: 402 LWR--LASLAQSSGAPVTKWATREEREGQLHLWFHCVG-IRVSDQLERLLWRSIPHIIVT 458 + R LA LA+ S W E R + L C + VS L + L P I T Sbjct: 411 MLRGDLALLAERSERAFVYWG--EARATSVGL---CAAPVDVSAYLRKYLLPIAPAAIFT 465 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SATLR+ SF L++ GL + D +A+ SPF++ Q + +PR +P + Sbjct: 466 SATLRAAGSFDYLRQRLGLDSEIADE-LAVPSPFDYARQAILYLPRDLPDP------RDA 518 Query: 519 AEMAAFFRKQVESKKHLG--MLVLFASGRAMQRFLD-YVTDLRLMLLVQGDQPRYRLVEL 575 AA + VE G VLF S RA++ + L +LVQG PR LVE Sbjct: 519 GFTAAACARVVELCAITGGRAFVLFTSHRALREAARRLLGTLPHEVLVQGQMPRAALVEQ 578 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 R R +VL+G +F EG+D+ GD LS V + K+ F P P+V + ++S Sbjct: 579 FRARPG----AVLLGTGTFWEGVDVPGDALSLVIVDKLPFAPHTDPLVRARVQRIESRGG 634 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 PFE +P A+ L Q GRLIR G V + D R++T+ YG+ LD LP Sbjct: 635 APFEGYQVPQAALALKQGFGRLIRRSDDRGIVAVLDPRIVTRRYGRAFLDTLPA 688 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 207/710 (29%), Positives = 325/710 (45%), Gaps = 88/710 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + F R Q M+ VA+ LA EG+H +EA TG GK+L+YL+P IA + Sbjct: 255 LAASLRGFEARPGQLAMVEAVAQALA--EGKHAMVEAGTGTGKSLAYLVPAALIAMATGE 312 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +VVST ++LQDQI +D PLL++I D L+ GR YVC R + + A Sbjct: 313 PVVVSTHTLSLQDQIAERDFPLLRRIFGDELRLVVQKGRNNYVCLRKVRSEAR------- 365 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW-----DGLRDH-TDIAIDDDLWRRLSTD 190 L TP ++G + W DG R+ + ++ LW R+ ++ Sbjct: 366 ----LSTMATP--------VEDIQGIMALLVWLTETPDGTRETLSKSSVGPGLWARVQSE 413 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDE 249 SC+NR C +++ C +F ++ Q A ++V NH+LVM+ + S+ VLP ++ LV+DE Sbjct: 414 SESCINRRCPFFQPCYYFRTKQAAQAAHLIVTNHSLVMSDLASDHRVLPKYEH--LVVDE 471 Query: 250 GHHLPDVARDALEM---SAEITAPWYRLQLD-----LFTKLVATCME-QFRPKTIPPLAI 300 HHL + A + L S + A +RL D + ++V E R T+ L Sbjct: 472 AHHLEEQATNHLGFEVQSGVMAALAHRLVRDRGRAGVLAEVVRMLEELDIRGTTLESLEE 531 Query: 301 PER----LNAHCEELYELIASLNNILNLYMPAGQ----------EAEHRFAMGELPDEVL 346 + L A + ++ IA+ Y+PAGQ + E A E D Sbjct: 532 GKEWVGTLGAEVDAAFQAIAA-------YVPAGQSEARLDGAWRQTESFHAYREALDRTQ 584 Query: 347 EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLA 406 +RL L L L + +D + G ++ LG + + R+ Sbjct: 585 AGVKRLQDLRARLVDLVKSLPSD--DHVGR---------VVDAAGFLGSW--LDGIARMQ 631 Query: 407 SLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN 466 + VT WA + ++ + H + V+ L++ L+ + +++TSATL Sbjct: 632 EVLDEHPDDVT-WAEVQTGGSRVRVSVHRAPVDVARVLKQHLFDPLRSVVLTSATLAVNG 690 Query: 467 SFSRLQEMSGLKEKA-GDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 F GL+E A DR +A + SPF +Q ++ +P + + E+ + A Sbjct: 691 EFGFAIRKLGLEEHAREDRVIARTVPSPFAMDKQARLFVPSDVPDIAAAPPEEAATWLTA 750 Query: 524 FFRKQVESKKHLGMLVLFASG---RAMQRFLDY-VTDLRLMLLVQG-DQPRYRLVELHRK 578 E+ + MLVLF S R R + + L LL Q D R L+E R Sbjct: 751 SITDLAEASRGR-MLVLFTSHALLRETARLARAPLAERGLSLLAQDLDGSRAALLEAFR- 808 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 A+ E SV+ G Q+F EG+DL GD L+ + I ++ F P PV E L++ + F Sbjct: 809 --AHPE-SVMFGAQTFWEGIDLPGDQLTSLVIVRLPFAPPTHPVTAARLERLEASGQNAF 865 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 SLP A Q VGRLIR+ G +V++DKR++T+ YG ++P Sbjct: 866 RALSLPEAVVRFRQGVGRLIRTQQDRGVIVVFDKRIVTQRYGSMFWKSIP 915 >UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae RepID=C1ZB20_PLALI Length = 659 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 198/700 (28%), Positives = 309/700 (44%), Gaps = 91/700 (13%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L ++P + R Q +M V +A G HL +EA TG GK+ +YL+P I A Q Sbjct: 15 LARRLPHYEVRGEQLEMARAVTAAIA--AGEHLVVEAGTGTGKSYAYLVPAILAATANQG 72 Query: 78 T---------LVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTA 126 + +++ST ++LQ+Q+ S+DLPLL I+P ++F+A GR YV R L Sbjct: 73 STVDGGAKRRVIISTHTISLQEQLISRDLPLLNSILP-VEFSAVLVKGRSNYVSLRRLKG 131 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + E ++ L P ++ E + + +T DG D +W Sbjct: 132 --ALEKSRS---------LFPTSEAEDQVRSLAGWARETN--DGSLASLDFKPLPQVWDE 178 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM----ESEAVLPDPKN 242 + ++ +CL +NC Y +C ++ ARR + A+V++ NHAL A + E +VLPD + Sbjct: 179 VRSEHGNCLGKNCPTYSDCHYYKARRRVWNADVLIVNHALFCADLALRREGASVLPDYQT 238 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 +V DE H L VA D L + Y L LF + + P P A+ Sbjct: 239 --VVFDEAHTLEQVAADHLGLGISSGQIEYMLN-RLFNEKTQKGLIAGYPLE-PQRALIT 294 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAM-GELPDEVLEICQRLAKLTEMLRG 361 RL ++YE + + ++ + PA A+ L ++ ++ LA+ L+ Sbjct: 295 RLK---HDVYEFFDEIRHRVHDHGPANGRVREPLAIENTLSGDLRKLATSLAEYAAKLK- 350 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS-----LAQSSGAPV 416 Q + + A +L LA + Q G V Sbjct: 351 --------------------------QEEEKIELVSASERLISLAGSISQWVEQGRGDSV 384 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR-SLNSFSRLQEMS 475 W + L + C I V L L+ +P +I+TSATL SF ++ Sbjct: 385 Y-WVETTGAQRNLKVKLCCSPIEVGSVLREELFNKVPTVILTSATLAVGQQSFDFIRSRL 443 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP--SIDNEEQHIAEMAAFFRKQVESKK 533 GL R L SPFN+ EQ K+V+P +P S + E + E + Q + Sbjct: 444 GLTRSQSLR---LGSPFNYREQMKLVLPDGMPDPTDSPADFEFAVCEKIQEYVSQTSGRA 500 Query: 534 HLGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQ-GDQPRYRLVELHRKRVANGERSVL 588 VLF S + +Q R +++ L Q G+ PR +++E RK A +VL Sbjct: 501 ----FVLFTSYKMLQSCERRLTNWLIRKNFSLYSQSGELPRSQMLERFRKDPA----AVL 552 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 G SF +G+D+ GD L V I K+ F D P++ E +++ PF +P A+ Sbjct: 553 FGTDSFWQGVDVPGDALQNVIITKLPFSVPDHPLLEARVEAIRARGGNPFMEYQVPEAAI 612 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 L Q GRLIR+ G VVI D R+ TK YG+ L++LP Sbjct: 613 KLKQGFGRLIRTKTDRGMVVILDPRIRTKPYGRVFLESLP 652 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 199/719 (27%), Positives = 320/719 (44%), Gaps = 101/719 (14%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + P + R Q M +V +++ +HL +EA TG GK+L+YLIP A + + Sbjct: 262 LSKTFPGYEVRDQQIDMALEVVRSI--NNSKHLVVEAGTGTGKSLAYLIPSAIFALKNNQ 319 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKII----PDLKFTAAFGRGRYVCPRNLTALASTEPT 133 +V+ST + LQDQ+Y+KD+P ++K++ DL+ + GR Y+C Sbjct: 320 RVVISTDTINLQDQLYNKDIPAVRKLLGGKGKDLRVSLVKGRNNYLCLNRWE-------- 371 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 FL + N EE K K+ L T + + + + W+R+S + + Sbjct: 372 -----RFLRSGI--NTPEEAKFAVKVLLWLQTTITGDVSELPLTSDEKQFWQRVSATEET 424 Query: 194 CLNRNCYYY--RECPFFVARREIQEAEVVVANHALVMAAMES-EAVLPDPKNLLLVLDEG 250 C R C R+C F AR E + + +VV NHAL+++ + S +VLP+ L++DE Sbjct: 425 CTTRVCRNRKGRQCFLFRARVEAESSHLVVINHALLLSDLASNNSVLPNYD--YLIIDEA 482 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H L D A + L + A +L+ M+ P + P I RL H + Sbjct: 483 HRLEDQATNHLGFEVDSRA---------LHELLNRVMDNSNP--VRPEGISARLPVHMQG 531 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRL--------------AKLT 356 AS+ + N+ M Q E A DE RL +LT Sbjct: 532 SRASNASVEQVTNIAMRLAQRTERTRAR---VDEFFASLGRLLPASMGMQNGYDEHLRLT 588 Query: 357 EMLRG--------LA----ELFLNDLSEKT----------GSHDIVRLHRLILQMNRALG 394 +RG LA +L L +L ++ I L+ ++ +A+ Sbjct: 589 AEVRGGEQWEGVLLAWENLKLTLRELVDEVHHCGELLEGLEGLHIAEYEELLAEV-QAIE 647 Query: 395 MFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPH 454 +F Q + + S+ + W + R G + L H + V L+ L+ Sbjct: 648 VF-LQDYIHEMNSIITAPTENDVTWISYSHRYGTITL--HKAPLDVGGILQEELYSKKKA 704 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 +I+TSATL + +F + GL E + + L SPFN+ E +++P EP Sbjct: 705 VILTSATLTTDRNFDYVTGRLGLYEF---QQLMLGSPFNYQETALLLVPTDIPEPGTAGY 761 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQGDQPRY 570 + + + A E + +VLF S A+Q + +++L QG+ R+ Sbjct: 762 QDAVESLVAELVLAAEGRT----MVLFTSHSAVQATQKAIYRELARHDILVLSQGEGSRH 817 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGE-W 629 RL++ + + R+VL+G +SF EG+D+ GD LS + I K+ F + PV + E + Sbjct: 818 RLLQ----QFKSNPRTVLIGTRSFWEGVDVVGDALSLLIIAKLPFEVPNEPVFVARSETF 873 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 + N Y ++P A L Q GRLIRS G VVI DKR+LTK YG + L +LP Sbjct: 874 ADAFNDY-----AIPQAILRLKQGFGRLIRSKTDRGVVVILDKRVLTKRYGVKFLTSLP 927 >UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N252_9GAMM Length = 639 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 195/688 (28%), Positives = 304/688 (44%), Gaps = 89/688 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + + R Q +M V++ LA E L EA TG GKT +YL P + ++ Sbjct: 15 LSNHVEGYSARTQQIEMAEKVSEALANNEV--LIAEAGTGTGKTFAYLAPAMLSGQK--- 69 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPT--- 133 + +ST LQDQ++ KDLP L++++ LK GR Y+C L ALA +EP+ Sbjct: 70 -VFISTGTKNLQDQLFKKDLPKLREVLSVPLKAALLKGRSNYLCHHRL-ALAESEPSAVY 127 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 QQ L L + + + GDL + D L + + LW ++++ + Sbjct: 128 QQHTLQTLREWMGKTS----------SGDLS--ETDLLEEQSP------LWPKVTSTIDN 169 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-----VLPDPKNLLLVLD 248 CL + C Y +C ARR+ QEA++V+ NH L+M+ M +A VLPD ++D Sbjct: 170 CLGQQCPDYDDCFIVEARRKAQEADIVIINHHLLMSDMALKASGQGEVLPDAD--AFIID 227 Query: 249 EGHHLPDVARDAL--EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 E H LP +A L +S+ R + +L AT ME R E+++ Sbjct: 228 EAHQLPAIASQFLGHRVSSHQIQELSRDSIREM-ELDATDMEDIRQSA-------EKIDN 279 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 + + L Y Q+ + A+ L + ++ Q L +E RGL + + Sbjct: 280 RLHQFKLTLGDKEQRLPWYQVVQQQTTTQDALDSLIMAIEKLEQSLEPASERGRGLEQCY 339 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 R +I ++N +F L GA AT +E Sbjct: 340 -------------QRCQEIIKKLN----VFSDNETDDNLILWLDVRGASFILHATPQEIS 382 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 W ++D+ W + TSATL F+ + G+ + + Sbjct: 383 QHFQQW-------IADKPSA--W------VFTSATLTVAGKFNNFIQQLGIDDPVTKSW- 426 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 SPF++ Q + +P + VEPS ++ HIA +A K V + +LF S RA Sbjct: 427 --QSPFDYASQSLLYMPSIPVEPSNNSYNSHIANIA----KAVIEYSQGRIFLLFTSYRA 480 Query: 547 MQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + D + D+ +LVQG + +L+ R+ +VL+G SF EG+D++G+ LS Sbjct: 481 LHEVADALQDMEYPILVQGAGAKSQLLAEFREH----GNAVLLGTNSFWEGVDVRGEALS 536 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I KI F PV+ L+ PF +PSA L Q +GRLIR +G Sbjct: 537 CVLIDKIPFASPGDPVLEARINHLRERGGNPFRSIQIPSAVIQLKQGIGRLIRDKRDYGV 596 Query: 667 VVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 +V+ D R L+K YGK + +LP PI Q Sbjct: 597 LVLCDPRFLSKPYGKIFMRSLPPMPITQ 624 >UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6H8_9PLAN Length = 666 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 190/696 (27%), Positives = 318/696 (45%), Gaps = 104/696 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI--------AREEQKTL 79 R Q +M VAK + ++ +HL +EA TGVGK+ +YL+P I + +++K L Sbjct: 29 RPEQLEMAEAVAKAI--DQKQHLLVEAGTGVGKSFAYLVPAILATCKQNETRSGKDRKRL 86 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTAL---ASTEPTQ 134 +VST ++LQ+Q+ +D+P L ++P ++F+A GR Y+ R L A + ++ Sbjct: 87 IVSTNTISLQEQLIHRDIPFLNAVLP-VEFSAVLVKGRSNYISLRRLKGAVERAGSTFSK 145 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 ++ L+ LD + +++ DG R + +W + ++ +C Sbjct: 146 EEELSQLDQIVQWSHKTT----------------DGSRADLEFRPIPKIWDEIQSEHGNC 189 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM----ESEAVLPDPKNLLLVLDEG 250 L + C Y +C ++ ARR + A+V+V NHAL + + E ++LPD + +LDE Sbjct: 190 LGKRCATYNDCFYYRARRRVWNADVLVVNHALFFSDLAIRREGSSILPDYDTV--ILDEA 247 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H + VA D L +S IT + LF KL + +T L + L C++ Sbjct: 248 HTIEAVAGDHLGLS--ITNSQFDY---LFNKL-------YNDRTQKGLLLHHNL-VDCQQ 294 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 ++ L RF + +L D +LE +R L + Sbjct: 295 ---------HVTRL----------RFMVEDLFDHLLEWQDSSGLANRRIRQLPPI----- 330 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 E S ++ L I + L E + +L A + G + W T++ ++ Sbjct: 331 -ENCVSQEMRLLAARIAEYAFTLKNEEEKIELSAAAERCTALGDSLNSWLTQQAEADSVY 389 Query: 431 LWFHCVGIR------------VSDQLERLLWRSIPHIIVTSATLRSLN-SFSRLQEMSGL 477 W R V L L+ +I+TSATL + FS + GL Sbjct: 390 -WVEATRGRHQRVKMVNAPVDVGPVLRDELFNQAQTVILTSATLAVGDQDFSFTRSRLGL 448 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 + + L SPFN+ EQ ++++P +P +N + A +A ++ +E Sbjct: 449 TQSEE---LKLGSPFNYQEQVRLILPAAMPDPG-ENPAAYEAAVAEKLKQYIEQTDGHA- 503 Query: 538 LVLFASGRAMQRFLD----YVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQ 592 LF S + MQ+ D ++++ L L +QGD PR ++E R N R VL G Sbjct: 504 FALFTSYKMMQQCADRISGWLSEHNLALYLQGDGLPRSLMLE----RFRNNPRGVLFGTD 559 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF +G+D+ GD L+ V I K+ F D P++ E +++ PF +P A L Q Sbjct: 560 SFWQGIDVPGDALTNVIITKLPFSVPDHPLLEARVEAIRNRGGNPFMDYQIPEAIIKLKQ 619 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 GRLIR+ +G+VVI D R+ TK YG++ L++LP Sbjct: 620 GFGRLIRTASDYGQVVILDPRVRTKRYGEKFLESLP 655 >UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9XI74_9BACT Length = 719 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 209/752 (27%), Positives = 315/752 (41%), Gaps = 105/752 (13%) Query: 2 ALTAALKAQIAAWYK--ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVG 59 A + L AQ+ + + + + +F R Q++M VAK L E HL +EA TGVG Sbjct: 11 AAGSDLVAQVESIFSPTGILSRASNFEYRPQQQRMAVAVAKAL--ENKDHLVVEAGTGVG 68 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRY 118 K+L+YLIP I A K V+ST + LQ+Q+ KDLP+L++++P +T GRG Y Sbjct: 69 KSLAYLIPSILYAIASSKKAVISTHTINLQEQLTQKDLPMLEQVLPIKFSYTMLKGRGNY 128 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C R L + QQ F E +EE KR + T K DG +I Sbjct: 129 LCSRRLF-----KAMQQSNSLFTSPE-----EEELKRIHEWS---KTTK-DGSLSDFEIE 174 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRE-------CPFFVARREIQEAEVVVANHALVMAAM 231 D +W + +++ C + C + E C F AR+ I A+V+V NH L + Sbjct: 175 PDPKVWSHVCSERGLCSPKMCGHQSEFGQQNGVCFFQRARQRILSADVLVVNHTLFFTLL 234 Query: 232 ESEAVLPDP----KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCM 287 + KN +V DE H + VA + +S Y LQ + + Sbjct: 235 GGIEEENEGGVLFKNDFVVFDEAHQMESVASKHIGLSVSSGQMRYALQRLWNPRTEKGIL 294 Query: 288 EQFRP-KTIPPLAIPERLNAH--------CEELYELIASLNNILNLYMPAGQE--AEHRF 336 R KT+ +A R H CEEL + + N AG+ A + Sbjct: 295 ATLRQGKTVTLVADLLREADHFFGEVETACEELRKAQSDQN--------AGESNAARAKR 346 Query: 337 AMGELPDEVLEICQRLAKL-TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGM 395 A EL E+ Q L + LR + +K ++V +R + + + M Sbjct: 347 AWTELRIRKPELVQDNVTLPIQRLREAVSELIKMTEDKDTGQELVECNRRLADLREEVAM 406 Query: 396 FEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHI 455 F QS+ W R + Q + + + V++ L R L+ I Sbjct: 407 FLNQSE------------EDYVYWVERSGKT-QKNFALNAAPVDVAEFLRRRLFGCDTSI 453 Query: 456 IVTSATLRSLNS-----------------------FSRLQEMSGLK---EKAGDR---FV 486 I+TSATL F + E GL + G + + Sbjct: 454 IMTSATLSVSEKDLESAKAKAAAAEKKSEPERPARFQKRNEFPGLNYFVRRVGAQEATLL 513 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 + +PF++ EQ K+ + +P + F K K VLF S Sbjct: 514 QVGTPFHYEEQMKLFVVNKMPDPRDQGYRDALIHWIEHFIKMTHGKA----FVLFTSYSL 569 Query: 547 MQRFLD----YVTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 MQ D + L+L + VQG PR ++E ++ V SVL G SF +G+D+ Sbjct: 570 MQDVADRMQPFFDKLKLEVYVQGTGTPRSVMLEKFKENVD----SVLFGTDSFWQGVDVP 625 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 G+ LS V I ++ F D P++ E +++ PF SLP A Q VGRLIR+ Sbjct: 626 GEALSNVIITRLPFAVPDHPLIEARIENIEAHGGNPFSEFSLPEAILKFRQGVGRLIRTK 685 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 G VV+ D R+L K YG+ LDA+P P+E Sbjct: 686 TDKGIVVVLDNRVLVKRYGQAFLDAMPKCPVE 717 >UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY63_METI4 Length = 673 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 191/692 (27%), Positives = 301/692 (43%), Gaps = 92/692 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M ++ +L E+ HL IEAPTG GK+L+YL+P + ++ + V+ST + Sbjct: 45 RPQQEKMAEEIYSSL--EKKEHLIIEAPTGTGKSLAYLVPSLLYCKQFSQRGVISTHTLN 102 Query: 88 LQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 LQDQ+ KD+PLLKK D GR Y CP+ L + DL + + Sbjct: 103 LQDQLLHKDIPLLKKTFFQDFSAVLLKGRQNYFCPKRLEKVMKHA---SDLFSHFE---- 155 Query: 147 PNNQEEQKRCAKLKGDLDTYKWD-----GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 + + Y W G + D LW ++ ++ C +R+C + Sbjct: 156 ------------INDLMRIYDWSVRTTTGDVEELDPLPSASLWSQICSEPGLCNSRSCSH 203 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAM--------ESEAVLPDPKNLLLVLDEGHHL 253 C + R + ++++ + NHA + + + E LP ++ + + DE H L Sbjct: 204 NPRCFYQKFREKSAQSDLTIVNHAFYFSLLGQSVDPEFQKETGLPFGESFV-IFDEAHTL 262 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI---PERLNAHCEE 310 VA L S YRL L+ +L F P T L + +L E Sbjct: 263 EKVASIQLGFSVS----KYRL-LNNLARL-------FNPSTRKGLLLCLKESKLLTKNIE 310 Query: 311 LYELIASLNNILNLYMPAGQEAEHR-FAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 YE SL L + +E R A LP + + +RL K ++ + +N Sbjct: 311 AYEQAQSLFQALGRMLVQNSLSEQRILAPLSLPHPLPDTLERLVK------EISSVLINL 364 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEA---QSKLWRLASLAQSSGAPVTKWATREERE 426 ++ L ++ L+ L E + W L+ S E Sbjct: 365 EDKEIKEEIENCLEKISLERRALLEFVEMKIPEHVYW--VELSDPSNP-----------E 411 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 G + L + V L+ LL+ +I+TSATL+ + FS Q+ GL R Sbjct: 412 GNVQLL--AAPLEVGPLLQTLLYEKEISVIMTSATLQVASHFSYFQDRVGLY----SRTF 465 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 L SPF++ Q KI+IP+ +PS Q+ +A + + V K LVLF + + Sbjct: 466 QLQSPFDYGRQMKIIIPKNMPDPS--QSPQYEEALAYWIERLVRYTKG-SALVLFTNRKT 522 Query: 547 MQRFLDYV----TDLRLMLLVQ-GDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 + + + T L VQ G PR++L+ L ++ + +VL G+ SF +G+D+ Sbjct: 523 LLTMTEALGQKLTALNFPFFVQDGKTPRHKLLNLFKE----AQHAVLFGMDSFWQGIDVP 578 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 G+ L V I K+ F D P V + E L+ + F SLP A Q VGRLIRS Sbjct: 579 GESLRNVIITKLPFSAPDHPQVQAKCEKLEQQGKNAFTHYSLPEAVLKFRQGVGRLIRSK 638 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 G + I D R+L+K+YGK L+++P PIE Sbjct: 639 EDKGIIAILDSRILSKSYGKVFLNSIPPAPIE 670 >UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3T5_DESAC Length = 850 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 206/753 (27%), Positives = 313/753 (41%), Gaps = 135/753 (17%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 A + A + L + + R Q +M VA+ A + IEA TG GK+L+YLIP Sbjct: 131 AHVLAAHGPLASHLGSYEERPEQLRMALAVAE--AFNQNGLATIEAGTGTGKSLAYLIPA 188 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTA 126 I A + ++ + +ST + LQ+Q+ SKDLPLLK+++ D +F + GR Y+C R L + Sbjct: 189 IMWALDNEQPVAISTNTINLQEQLISKDLPLLKEVM-DREFHSVLVKGRNNYLCLRRLDS 247 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDL-DTYKWD-----GLRDHTDIAID 180 A EP DL Q EQ G+L ++W G RD Sbjct: 248 -AHREP---DLF-----------QNEQS------GELAQLHEWAAATNVGSRDELTFIPS 286 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM----ESE-- 234 +W + + C C +Y C F ARR A+++V NHAL+++ + E+E Sbjct: 287 SAVWMEVCCEMDQCPRTRCPHYSRCFFHKARRRAAHADLLVVNHALLLSDLSLRAETENY 346 Query: 235 ---AVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ-- 289 AVLP + V DE HHL D A + + Y L +LV + Sbjct: 347 SAAAVLPPYSRI--VFDEAHHLEDAATRNFSIRLSHLSFAYSL-----NRLVHPRKPEKG 399 Query: 290 FRPKTIPPLA--IPERLNAHCEELYELI-------------------------------A 316 P+ + LA +P+ L+A + LY I A Sbjct: 400 LLPRLLSTLARELPDTLSALYDSLYRRIETAALDCRQLRDDLGETFTGQRDKLLQTDESA 459 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 S N P E E + + +++ C+ L+ + L E L E+ Sbjct: 460 SANGFCWRITPQCTETERWLVLQKGFAPLIKQCESLSNHLDQLIKACEQLPEKLFEQVSG 519 Query: 377 H--DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH---L 431 DI + I M L ++ S+G W E G+ L Sbjct: 520 QLTDIRAMSGRIQCMGSEL-------------AIVLSAGDSACTWIEINESRGRKRDKIL 566 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK---EKAGDRFVAL 488 W + I V+ L++ ++ I+ TSATL F + +GL EK + + L Sbjct: 567 WLNSAPISVAATLKQAVYDRFRSIVFTSATLTVNRQFHYFHQRTGLNLCPEKRRQQ-LCL 625 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 DSPF+ Q ++VIP V P+ N AA +QVE V+ + GR+ Sbjct: 626 DSPFDFASQARVVIPTDIVPPTHQN-------YAAMLAEQVEQA------VIASEGRSFV 672 Query: 549 RFLDYVTDLRLM-------------LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 F Y +L L QG R+ L+ K+ ++ +L G SF Sbjct: 673 LFTAYSLLKKLYNELEPPLHARGFNCLYQGQSARHLLL----KKFRLDQKHILFGTDSFW 728 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+D+ G L QV I ++ F P+ I E L+ + PF ++P A L Q G Sbjct: 729 EGVDVPGQALQQVIITRLPFRVPTEPIQIARSEHLEQMGVDPFMHYTVPQAVLRLKQGFG 788 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 RLIR G V+I D+R+++K YG+ L++LP Sbjct: 789 RLIRHRQDRGVVLILDQRVISKGYGRIFLNSLP 821 >UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URD7_AKKM8 Length = 661 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 193/680 (28%), Positives = 309/680 (45%), Gaps = 74/680 (10%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 DF RA Q+ M VA+ L + L +EA TGVGK+L YL+P + A + + V+ST Sbjct: 34 DFEYRAEQQSMALAVARALQVDA--PLLVEAGTGVGKSLGYLLPAVKFALDFDRKAVIST 91 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQDLLAFL 141 + LQ+Q+++KD+PLL+ + + F+AA +GR Y+C L + LA + Sbjct: 92 HTINLQEQLFNKDIPLLRTAL-GIDFSAALLKGRQNYLCHTRL----------RRALAQM 140 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 D T E KR D DG +W + ++ +C R+C Sbjct: 141 DSLFTQGEAAELKRIQ----DWALRTQDGTLSDMAFRPSSKVWAMVCSEPHACSMRHCG- 195 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAM-----ESEAVLPDPKNLLLVLDEGHHLPDV 256 CP+ AR+ + EA+VVV NH L M EA P + + +LDE H + ++ Sbjct: 196 -PSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGDFV-ILDEAHMIENI 253 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 A A ++ +++ P +L + + P+T L P LN L++ + Sbjct: 254 A--ARQLGVQLSEPHLNYEL----------LRMYNPRTHKGLLKP--LNN--PSLFQRVQ 297 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 + + L+ Q A +++ I Q + + L EL +E+ Sbjct: 298 DVMDASGLFF---QNARDDLGFAG-SGKIVRILQPEWSQDILSQPLMELIGELKTEREKQ 353 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 + + + M A M EAQ+ L L + + WA R +G+ ++ Sbjct: 354 EENAAVKDELADM--AARMEEAQASLKVLMDMTEEGH---VYWAERSGPDGR-NMSVCSA 407 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD---RFVALDSPFN 493 + V D L L+ + I+TSATL + ++ +MS + G R + + SPFN Sbjct: 408 PVEVGDILRERLFSAGRSAILTSATLGTGDA-----DMSYFAGRVGAERIRKLQIGSPFN 462 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM----QR 549 + EQ ++++ R EP ++ AE+ + K+ ++ VLF S R M ++ Sbjct: 463 YREQMRLIVARSMPEP----DQPEYAEVLPEWIKRYLAESRGRAFVLFTSYRLMVQAAEK 518 Query: 550 FLDYVTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 + + L VQG D R+ ++E RK V SVL G SF G+D+ G+ LS V Sbjct: 519 VRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDV----DSVLFGTDSFWTGVDVPGESLSNV 574 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 + ++ F D P+V + E ++ PF S+P A L Q VGRLIR+ G VV Sbjct: 575 IVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAILKLRQGVGRLIRTRSDSGMVV 634 Query: 669 IYDKRLLTKNYGKRLLDALP 688 I D R+ TK YG R L +LP Sbjct: 635 ILDPRVATKRYGMRFLKSLP 654 >UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterineae RepID=C5VAL7_9CORY Length = 681 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 205/726 (28%), Positives = 315/726 (43%), Gaps = 115/726 (15%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M VA L E RHLA++A TG GK+L+YL+P +A A+E + T++VSTA +A Sbjct: 19 RPGQVAMTEAVATALESE--RHLAVQAGTGTGKSLAYLVPAVAHAQETESTVIVSTATIA 76 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNL---TALASTEPTQQDLLA 139 LQ Q+ +DLP L + + L F GR Y+C + TAL + +P D Sbjct: 77 LQRQLVDRDLPRLAESLEPLLDHKPSFAIMKGRQNYLCQNKVAQATALEADDPNSGDADG 136 Query: 140 FLDDELTPNNQEEQ-----KRCAKLKGDLDTYKW-----DGLRDHTDIAIDDDLWRRLST 189 T E + + A++ Y+W G RD + + D WR++S Sbjct: 137 NAGGAQTALVDESELSWLGRHMARI------YEWANETETGDRDSLEPGVPDLAWRQVSV 190 Query: 190 DKASCLNRN-CYYYRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVL 247 C+ N C + C +ARR+ ++ +VVV NHAL+ + AM VLPD + ++++ Sbjct: 191 GAKECIGANRCPFGDSCFAELARRKARDVDVVVTNHALLAVDAMLDINVLPD--HDVVII 248 Query: 248 DEGHHLPD---------VARDALEMSA----------------EITAPWYRLQLDLFTKL 282 DE H L D + AL MSA ++ W ++ + + Sbjct: 249 DEAHELDDRITSMATTEIGVTALNMSARRAGKLGAEGRDEKLIDVAREWEQVMMSIDPGR 308 Query: 283 VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 + T E RP L+A + + L G+ E GE Sbjct: 309 LTTLPEVLRPT--------------------LVALQDGLWQLQQTIGRAPE-----GEAA 343 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 +E +RL+ N L+E+ HD V + +L +A S Sbjct: 344 NEPERHAERLS------------LANHLTEQ---HDAVARILSAFPAHPSLSPDDATSP- 387 Query: 403 WRLASLAQSSGAPV-TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSAT 461 A+ S+ AP WA +ER G + + VSD L L+ +++TSAT Sbjct: 388 -EPATPPGSADAPEDVVWAVVDERRGTM---LKVAPLSVSDLLRSRLFDH-NTVVLTSAT 442 Query: 462 LRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAE 520 L +F+ + GL + D A +PF+ + G + +PR P D E+ ++E Sbjct: 443 LTIGGNFNAMAASWGLPAGSWDHLDA-GTPFDPAKSGILYVPRHVPFPGRDGLHEKTLSE 501 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKR 579 M + LG LF+S RA ++ + + L +L QGD LV+ R Sbjct: 502 MYELI--MAAGGRTLG---LFSSRRAAEQATESLRRRLPFDVLCQGDDSMGALVD----R 552 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 A E + L G + +G+D+ G S V + KI FP D P++ E + R F Sbjct: 553 FAKQENTCLFGTLTLWQGVDVPGKSCSLVIMDKIPFPRPDDPLLQARKEAADAAGRNGFM 612 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVP 698 + A+ + Q GRL+R G V I DKRL+ K YG LL++LP F P+V Sbjct: 613 EVAATHAALLMAQGAGRLLRHTTDRGVVAIMDKRLIEKRYGGFLLNSLPPFWRTTDPKVV 672 Query: 699 EGIVKK 704 G +K+ Sbjct: 673 TGALKR 678 >UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Q3_9BACT Length = 701 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 189/689 (27%), Positives = 304/689 (44%), Gaps = 98/689 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M +A L G +L IEAPTGVGK+ +YL+P I A + VVST + Sbjct: 77 RPQQLEMSTAIADALTA--GENLCIEAPTGVGKSFAYLVPLIYRAVHSGRPAVVSTETIN 134 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQDLLAFLDDEL 145 LQ+Q+ KDLPLLK++ + F AA +GR Y+C R L+ + D L Sbjct: 135 LQEQLIDKDLPLLKQLT-GINFKAALAKGRHNYLCRRRFAMLSGEQ----------RDTL 183 Query: 146 TPNNQEEQKRCAKLKGDLDTY-KW-----DGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 P A L D+ KW DG RD D ++ +W + ++ +CL C Sbjct: 184 LP--------AAGLAVDVTRLGKWMQRTTDGERDSIDFRLEPTVWSMVCSEGINCLGPKC 235 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAM----------ESEAVLPDPKNLLLVLDE 249 ++R C ++ AR+ ++A++VVANHAL + + ++LP+ +L +DE Sbjct: 236 EFFRNCFYYKARQAWEDADIVVANHALFFTDLGMRLASGGNGAAGSLLPNYGAVL--IDE 293 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H L D A + L + +V+T + P+ L + + + Sbjct: 294 AHTLEDNAAEHLGLHLSRIG------------IVSTLNRLYNPEAARGLLMRKGADP--- 338 Query: 310 ELYELIASLNNILNLYMPAGQE--AEHRFAMGEL--PDEVLE-ICQRLAKLTEMLRGLAE 364 EL ++A + + ++ A+HR E+ PD + + L KL+++L Sbjct: 339 ELRGIVADARDEAYGFFKHFEDFLADHRETALEIQQPDRFPDRLSPHLLKLSKLLTD--- 395 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 +L+D+ + + + L Q+ R + L + + +A + Sbjct: 396 -YLDDIDDASFRTE------LDAQLVR------CREFLNGIDHFTHKTLPDAVYYAESDR 442 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 LH + V+D L +L+ +++ SATL SF +G R Sbjct: 443 NSISLH----AAPLNVADILADVLFNQDFPVMLCSATLTVRRSFDYFVNRTGF---CNGR 495 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + LDSPF +Q I I R +P DN +A+ F + + K VLF S Sbjct: 496 TLLLDSPFG-SDQAHIYISRGMPDPKDDNFNAALADEIPRFVEVTQGKA----FVLFTSY 550 Query: 545 RAMQRFLD----YVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 ++ D Y + LL+QG+ R L+ ++ V SVL G SF G+D Sbjct: 551 GTLRYCADALRGYFQEKGWQLLIQGENLTRTGLLREFKEDV----NSVLFGTDSFWTGVD 606 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 + G+ LS V + K+ F P++ ++ + F SLP A Q GRLIR Sbjct: 607 VPGEALSNVIVTKLPFAVPSHPLIAARMARIERQGKSSFAEYSLPEAVLKFRQGAGRLIR 666 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 S G +V+ DKR+++KNYG+ LD+LP Sbjct: 667 SRSDRGIIVLLDKRVISKNYGRIFLDSLP 695 >UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD62_RHOM4 Length = 673 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 208/712 (29%), Positives = 313/712 (43%), Gaps = 118/712 (16%) Query: 20 EQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 EQ P F R QRQM V + +A EG AIEA TG GKT YLIP + + + Sbjct: 21 EQQPGFELRPGQRQMAETVVRAIA--EGLPAAIEAGTGTGKTFGYLIPALCA----EARV 74 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQDL 137 +VST+ ALQ+Q+ KDLPLL K++ D + A +GR Y+C + + A E + + Sbjct: 75 LVSTSTKALQEQLVHKDLPLLGKLL-DRPISWALLKGRQNYLCRLKIESGAQEE---RPV 130 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 D+ E R + GDL+ + + L ++ D C R Sbjct: 131 FETRDEAEAFRRLLEWARRSDTDGDLEQFPGR---------VTPALRELVTMDADGCGGR 181 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMA-----AMESEAVLPDPKNLLLVLDEGHH 252 C +Y C ARR + +VVV NHAL++ A A+ P+ +LV+DE H Sbjct: 182 QCPFYDTCFLMEARRRAERVDVVVVNHALLLQDLMLRARSGGALYLLPEAEVLVIDEAHR 241 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 L ++A AL + +P YR +E+ R + + I R A E L Sbjct: 242 LEEMALGALSV---YISP-YR-------------VERLRRQALRLPGIDHRTRAELEALG 284 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 + L + + AG+ A A LTE L + L +L + Sbjct: 285 LVADELKRQADTAL-AGRPA--------------------APLTEAL----SVVLLNLRD 319 Query: 373 KTGS-HDIV-RLHRLILQMNRALGMFEAQSK----LWRLASLAQSSGAPVTKW------- 419 + G D+V + RL LQ E Q++ L L LA +G +W Sbjct: 320 RAGVLGDLVGQTMRLQLQRFGGSAQQELQARYEAVLRGLQRLAADAGVITERWRAQAAEH 379 Query: 420 ---ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL----------- 465 RE R H C + L+++L+ + P ++ TSATL +L Sbjct: 380 VLYVQRERR----HPVVICQPLDAGGTLQQVLFEAFPTVVCTSATLTTLAQPLRRRAAAG 435 Query: 466 ----NSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIP--RMRVEPS--IDNEEQH 517 F+ + +G E+ + V +PF++ Q + +P R++P+ D Q Sbjct: 436 EASDGPFAYFRRRTGFPEEGLELIVP--APFDYRRQALLYLPPDPARLDPTRIRDARTQQ 493 Query: 518 IAEMAAFFRKQVESKKHLG-MLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELH 576 E A Q G LVL S R M+R + + + +LVQG PR RLV Sbjct: 494 AYEEALIGEVQALVAASRGRALVLTTSLRMMERLAEALQECGYPVLVQGSAPRARLV--- 550 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 R + SVLV ++F EG+D+ G+ LS V I ++ FP + P + + ++ + + Sbjct: 551 --RQLKAQASVLVATRAFWEGVDVPGEALSLVVIDRLPFPGREDP--YWQARYEQAGDDW 606 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 FE+++LP A L Q GRLIR+ G V + D RL TK YG+ +LDALP Sbjct: 607 -FELEALPQALLTLKQGFGRLIRTRTDRGVVALLDGRLQTKYYGRWILDALP 657 >UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJC5_9DELT Length = 698 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 195/717 (27%), Positives = 299/717 (41%), Gaps = 92/717 (12%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLA------------- 51 AA +I A L +PD+ PR Q M VA TL E L Sbjct: 30 AARMGEIFAVGGLLARYLPDYEPREGQLSMAQAVAATLDPETAEELPPPETSGPERAPHP 89 Query: 52 -----IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-P 105 +EA TG GKTL+YL+P + R +VVST + LQ+QI +K++P +++ + P Sbjct: 90 TPRLLVEAGTGTGKTLAYLVPAVLSGRR----VVVSTNTINLQEQILAKEIPFIQRYLAP 145 Query: 106 DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDT 165 L+ GRG Y+C R Q L +L NQ + +L G ++ Sbjct: 146 WLQAMCVKGRGNYLCLRRW---------HQFLAKHRQGQLFTGNQGGAQ-LEQLAGWVEE 195 Query: 166 YKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHA 225 + +++A D LW L+ CL +C + EC RR+ A +++ NH Sbjct: 196 TDSGDKAELSELADDSPLWASLNAAGGHCLGSSCPHGAECFITTLRRKAARAHLLIVNHH 255 Query: 226 LVMAAM------ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLF 279 L + + +E + P+ +V DE HHL ++A +S Y+L LDL Sbjct: 256 LFFSDLAVRRFGHAEVL---PRYEAVVFDEAHHLENIATRHFGLSLS----HYQL-LDLV 307 Query: 280 TKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAM- 338 L + E+ R RL H L + LN + PA + RF + Sbjct: 308 RDLESMAEERLRENDR------ARLLQHARAL----GVEADRLNHFFPA---SRGRFPLP 354 Query: 339 ---GELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGM 395 E PD L E LRG DL G + + L+ R L Sbjct: 355 PLLAEHPD--------WPGLLEDLRGDFRALAGDLE---GLAQLAEIWNPPLRRVRELA- 402 Query: 396 FEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHI 455 L + + W R E+ ++ I ++ L L + Sbjct: 403 ----DTLEAICQPPEDDAGNDIYWYERLEKT----VFIGRSPIDIAPHLREHLHNQVKAT 454 Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 + TSATLR+ F ++ GL + + +AL++PF++ + + +P + P Sbjct: 455 VFTSATLRTGKDFRYVKNRLGLPADSPE--LALETPFDYAGRTLLYVPSQEMPPP--GAS 510 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVEL 575 H R+ V+ + +L+ + G Q + L LL+QGD PR L+E Sbjct: 511 GHPEASRRLMRELVQCSRGRALLLFTSLGAMRQAAAELAGTLPYPLLIQGDAPRQLLLEQ 570 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 R+R SVL+ + SF EG+D+ G+ LS V I K+ F PV++ E +K Sbjct: 571 FRRRTG----SVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMARVEKIKKDGG 626 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 PF +P A L Q VGRL+RS G + I D RL +K+YG+ L +LP P+ Sbjct: 627 NPFFDFQVPRAVLMLRQGVGRLLRSTADRGVLAILDGRLFSKSYGRIFLQSLPPSPV 683 >UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRY2_9GAMM Length = 646 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 207/712 (29%), Positives = 300/712 (42%), Gaps = 110/712 (15%) Query: 10 QIAAWYKALQEQ------IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 Q W+ AL +P F R Q++M A VA LA EG +EA TG GK+ + Sbjct: 3 QDGEWHAALGADSPLRRILPHFHVRRQQQEMAAQVAGWLA--EGGVGLVEAGTGTGKSFA 60 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPR 122 YL+P + R+ +++STA+ ALQDQI KD+P+L + + GR Y+CP Sbjct: 61 YLLPALLCERK----VLISTASRALQDQILDKDIPVLAQAWSSPRRVVRLKGRSNYLCPF 116 Query: 123 NLT-ALASTEPTQ--QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 L ALA + +DLL D A G+ D + L + + + Sbjct: 117 RLQRALAEGVAPRLARDLLVVAD-------------WAGRTGEGDIAELSALPESSPV-- 161 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA----MESEA 235 W +++ + +CL +C + CP AR+ EA+VVV NH L++A +ES Sbjct: 162 ----WPLVTSTRDNCLGSDCPEFARCPVIAARKRALEADVVVVNHHLLLADLALRVESRG 217 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDAL--EMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 L P+ +++DE H L D+A +S+ W R E Sbjct: 218 DL-LPRVDAVIIDEAHQLADLAGQYFGQHLSSHQLLEWARDSRQALLAAARDDAE----- 271 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQE---AEHRFAMGELPDEVL---- 346 L +P RL H E ++ GQ+ E R+ P +VL Sbjct: 272 ----LGLPARLEQHIEH--------------WLAQGQQLPGGESRWEWPSFPVQVLTASL 313 Query: 347 -EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRL 405 ++ A+L L+ L E F +L + G + Q+ L F Sbjct: 314 RQVASEAAQLESTLQSLRE-FSKELEQCAGRGE---------QLTGLLEFF--------- 354 Query: 406 ASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL 465 L S +W R R L H I + L L+ I+ SATLR Sbjct: 355 --LKPESEPSAVRWLERRGR----GLLLHASPIDLGPLLRGELFARNATTILVSATLRVG 408 Query: 466 NSFSRLQEMSGL--KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 F L+ GL E + FVA DSPF++ Q + +P EP+ E A Sbjct: 409 GDFGALEARLGLVEGEPSPQHFVA-DSPFDYTCQALLYLPPQMPEPASPQFTAACIEAAI 467 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQRF-LDYVTDLRLMLLVQGDQPRYRLVELHRKRVAN 582 + + LF S RA++ ++ L +LVQG PR RL++ R R N Sbjct: 468 PVIEASGGR----CFFLFTSHRALREAAVELPQRLDFPILVQGSMPRARLLDAFR-RAGN 522 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 +VL+G SF EG+D++G+ LS V I K+ F PV+ ++ PF Sbjct: 523 ---AVLLGAASFWEGVDVQGETLSCVIIDKLPFANPGDPVLRAHHRHCAAMGGDPFRDLQ 579 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 LP A L Q VGRLIRS G + I D RLL K YG+ L +LP P+ Q Sbjct: 580 LPQAVIALRQGVGRLIRSESDRGVLTICDPRLLNKGYGRIFLRSLPPIPVVQ 631 >UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7T8_GEMAT Length = 713 Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 198/714 (27%), Positives = 312/714 (43%), Gaps = 90/714 (12%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 I D+ R QR M V T EG +EA TGVGK+L YL+P + A + VV Sbjct: 19 IRDYEDRPSQRAMATAVTTTF--NEGGVALLEAGTGVGKSLGYLVPALRWAAANGERTVV 76 Query: 82 STANVALQDQIYSKDLPLLKKIIPD--LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 STA + LQ+Q+ +KDLP L++ + D ++F G Y+C L A A Sbjct: 77 STATITLQEQLVAKDLPFLQRALSDQPVRFALLKGWRNYLCLNRLAAAQGAG------AA 130 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 DD ++ + + ++ K DG A ++W +S + C C Sbjct: 131 LFDDNVSDDVAMIAEWASRTK--------DGSLADLPTAPRGEVWDEVSAEPDLCGRMKC 182 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAM---------ESEAVLPDPKNLLLVLDEG 250 +Y +C F AR+E A+VVV NH L+++ + E AVLP K LV+DEG Sbjct: 183 EHYNDCFLFKARKEAAAADVVVVNHHLLLSDVAVRRQVQNWEDSAVLPAYKR--LVIDEG 240 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA----------- 299 HHL + A + + IT R LF +L E+ +P LA Sbjct: 241 HHLEEAA--GSHLGSSIT---RRALSRLFNRL-----ERRGKGLLPTLAAKLSGKNDLLS 290 Query: 300 -----------IPERLNA--HCEELYELIASL-----NNILNLYMPAGQEAEHRFAMGEL 341 L A + L+EL+A++ +L L + R +G+ Sbjct: 291 VASMDLLREGLFSSVLTARDRTQLLFELLAAVLEQQGGGVLRLTESFQEHDLWRNGIGDT 350 Query: 342 PDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSK 401 E+L +AK M++ E + L E + + + +R LQ A Sbjct: 351 LKELLNEIDAIAKGLAMVQTRLESDQSRLEELSSTVNEIRGVTRRLQ--------NAGDA 402 Query: 402 LWRLASLAQSSGAPVTKWATREEREG--QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 L + + + G V +W + + + +L HCV + ++ L L+ + +VTS Sbjct: 403 LMK-GLMPPADGPAVVRWMEFQGKPTPHERNLAVHCVPLDLAPVLRDDLFGRVETAVVTS 461 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGD-RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 ATL + F L+ GL R SPF++ Q +V+P P+ + +H Sbjct: 462 ATLSTDGGFQFLERRLGLAGSTSPVRAAIFPSPFDYPRQALLVVPTDLPAPN-EQAREHF 520 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQGDQPRYRLVE 574 A + + G+ LF S R ++ +++ R LLV G++PR +L++ Sbjct: 521 AGVTRHLHDLAHASDG-GLFGLFTSHRDVREMAEWMRGQGLSGRWPLLVHGEEPRDQLLQ 579 Query: 575 LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN 634 R+ R++L+G +F EG+D+ GD L + I K+ F P+V + E + + Sbjct: 580 RFRE----SGRAILLGTATFWEGIDVPGDALRGLLIAKLPFRVPTEPIVAAQCEAIDARG 635 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 F LP AS L Q GRLIR+ G VV+ D R++TK YG+ LL+ LP Sbjct: 636 GNAFVEYMLPHASLRLKQGFGRLIRTATDAGVVVLSDPRVVTKRYGRALLNGLP 689 >UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivorax RepID=Q0VQH3_ALCBS Length = 668 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 197/677 (29%), Positives = 296/677 (43%), Gaps = 85/677 (12%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P + PR PQ +M AD + + G G L +EA TG GKTL+YL+P + E TLV Sbjct: 37 LPGYQPREPQLEM-ADAVEDVIGS-GATLLVEAETGTGKTLAYLVPALL---SEGPTLV- 90 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQDLLAF 140 ST +LQDQ++ KDLP++KK + + A GR Y+CP L E Q+D F Sbjct: 91 STGTKSLQDQLFFKDLPMVKKALNLPRKVALLKGRANYLCPYRL------ELHQEDA-RF 143 Query: 141 LDDELTPNNQEEQKRCAKLK-GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 L E Q A+ + GD+ + I D +W +++ +CL C Sbjct: 144 LTRETVGQMQIVSHWAARTRTGDIAELQ--------QIPEDAPVWPWVTSTADNCLGTEC 195 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVM--AAMESEAVLPD--PKNLLLVLDEGHHLPD 255 Y ECP AR+E QEA++VV NH L AA+ + P ++ DE H LP+ Sbjct: 196 PRYNECPLMKARKEAQEADLVVVNHHLFFADAALRGNGAASELLPTANTVIFDEAHQLPE 255 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 +A F ++T Q + L+ A EL L+ Sbjct: 256 IA------------------AAFFADTLST--RQIQELGRDSLSEAGHTAADLAELNRLV 295 Query: 316 ASLN-NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL--FLNDLSE 372 A+++ + ++L + G + E R E EV E + +L+ L EL FL L++ Sbjct: 296 AAVDKSSMDLRLSLG-DGERR----EPWTEVAENKAVIEAGEALLQALQELDAFLGPLAK 350 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 + D A ++ LA+ + W +R LH Sbjct: 351 ASRGMDACSRR--------------ASEQVDCLAAYLKGGQPNRVYWFETFKRSVVLH-- 394 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPF 492 + V+ QL R+ I+TSATL F +Q GL R + L+SPF Sbjct: 395 --STPLSVAAQLRAQRERNPCSWILTSATLSVGGRFEHIQHRLGLDSA---RTLRLESPF 449 Query: 493 NHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 + Q P P N+ ++ A++ A + + + LF S RA++ Sbjct: 450 DFKRQAVFYAPEGLPAP---NDSEYTAQLTAAMVPVINAARGR-TFFLFTSHRALREAAA 505 Query: 553 YV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 + L LLVQG+ R L++ R++ +VL+G SF EG+D++G+ LS V I Sbjct: 506 ILRQKLDYPLLVQGEAGRRELLDAFREK----GNAVLLGTSSFWEGIDVRGEALSCVIID 561 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 K+ F PV E + F LP A L Q GRLIR G +V+ D Sbjct: 562 KLPFGSPGDPVAAARIEHINRNGGNAFRDYQLPQAVLALRQGAGRLIRDPKDTGLLVVAD 621 Query: 672 KRLLTKNYGKRLLDALP 688 RLLT++YGK +++LP Sbjct: 622 PRLLTRSYGKLFVNSLP 638 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 193/729 (26%), Positives = 326/729 (44%), Gaps = 94/729 (12%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P F R Q+ M+ ++ L + R IEA TG GKTL+YL+P I A+++++ +++ Sbjct: 254 MPKFEKRESQQIMMKEIYTAL--RDSRFSLIEAGTGTGKTLAYLLPSIYFAKKKEEPVII 311 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQDLLA 139 ST V LQ QI K++PLL+KI+P F A +GR Y+C E D+ Sbjct: 312 STQTVQLQQQILEKEIPLLQKIMP-FSFEVALLKGRKHYLCLHKFEYALQEEEKNYDM-- 368 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL-WRRLSTDKASCLNRN 198 LT + L L T D RD +I L W R+ +D S Sbjct: 369 ----ALT--------KAKILVWLLQTETGD--RDELNIPEGGKLLWNRICSDVHSPGGMQ 414 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 ++ C + A+ + A++V+ NHAL+ SE L + + DE HH+ + A Sbjct: 415 SNWFSRCFYQRAKNKALFADIVITNHALLFQDFSSEEPLFASCEHI-IFDEAHHIEEAAS 473 Query: 259 DALEMSAEITAPWYRLQLD----LFTKLVATCMEQFRPKTIPPLAIPERLNAH------- 307 L + + +++L L L T V + + + K+ R+ +H Sbjct: 474 RTL--GEQFSCMYFQLVLSRLGTLETDDVLSKVYKMMKKSEQASRSTFRMVSHSLKELKF 531 Query: 308 -CEELYELIASL--------NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 +EL++++ + I N MP G+L D + E+ R Sbjct: 532 DADELFQMLRAFIFKQTKQEQGISN--MPLIYRYNTEVEKGKLWDSITELTNRFVYDIRK 589 Query: 359 LRGLAELFLNDLSEKTG------SHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 L E ++ L K + + + L L+ +M +AL + L Sbjct: 590 LLTTLEKQVDILQSKIEWEMHVVTGEFMHLIELLRKMAQALQL------------LILEK 637 Query: 413 GAPVTKWATREEREGQLH-LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 + VT W E + G +H + + ++++ +I TSATL +SF+ + Sbjct: 638 NSYVT-WMETETK-GTIHSTVLYGQPVHIAERFADEFLTEKKSVIFTSATLTVNDSFAYI 695 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIV-------IPRMRVEPSIDNEEQHIAEMAAF 524 +E GL + A + + + SPF EQ K++ I + E I++ HIA++A Sbjct: 696 KEELGLHDFAPNT-LQVPSPFRFEEQMKLMVSTDVPFIKKASNEEYIESVSTHIAKIAKA 754 Query: 525 FRKQVESKKHLGMLVLFASGRAMQR-FLDYVTDLRL---MLLVQ--GDQPRYRLVELHRK 578 + + MLVLF S ++ + + D L +LL Q ++ R RL+ + Sbjct: 755 TKGR--------MLVLFTSYEMLKEAYTNLKNDEELEGYLLLTQSVNNKSRSRLI----R 802 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 + ++S+L+G SF EG+D+ GD LS + I ++ F P P++ +GEWLK+ F Sbjct: 803 KFQEFDKSILLGTSSFWEGIDIPGDALSCLVIVRLPFTPPYQPMIEAKGEWLKNQGEDVF 862 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 +LP A Q GRLIR+ G V + D+RL + +YGK L ++P P+ + + Sbjct: 863 AKLALPQAILRFKQGFGRLIRTSTDTGTVFVLDRRLTSSSYGKYFLQSIPTVPLYEGPLE 922 Query: 699 EGIVKKKEK 707 E + + KE+ Sbjct: 923 ELLEQVKER 931 >UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteobacteria RepID=Q6AMF2_DESPS Length = 776 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 206/700 (29%), Positives = 309/700 (44%), Gaps = 103/700 (14%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEG----------RHLAIEAPTGVGKTLSYLIPGIAI 71 I + PR+ Q++M V+++L R L +EA TG+GKTL+YL+P + Sbjct: 134 IDHYQPRSGQQEMAQAVSRSLMDSNDPDPHAVSAPPRVLVVEAETGIGKTLAYLLPAVI- 192 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALAST 130 K +VVSTA LQDQI K++PLL+K+ + GR Y+C L Sbjct: 193 ---SGKRVVVSTATRNLQDQIIHKEIPLLEKMFGGRVSAQCVKGRQNYLC---LYKWYQH 246 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 + Q L DDE ++ EQ + + GD W +A D LW ++S+ Sbjct: 247 RSSAQLSLIAQDDE----DKIEQWLASTVTGDRAELHW--------LADDASLWHKISSQ 294 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA---VLPDPKNLLL 245 CL C C RR A +++ NH L + A++ E +LP + + Sbjct: 295 SDQCLGSECPEQENCFISRLRRRAAAARILIVNHHLFFSDLALKKEGYGEILP--RYQAV 352 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 + DE HHL D+A T A ++ + I L+ ERL Sbjct: 353 IFDEAHHLEDIA----------------------TTFFAKSFSSYQLRDI--LSDAERLG 388 Query: 306 AH---CEELYELIASLNNI---LNLYMPAGQEAEHRFAMGELPDEV-LEICQRLAKLTEM 358 +E L++ L+ + LN +M + + A+ EL E E Q+ +L + Sbjct: 389 DKILVSDEHKNLLSRLSGMRVRLNAFMHVFPKKRGKTALKELVTEYGQEAWQQEVEL--L 446 Query: 359 LRGLAELF--LNDLSEKT-GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ-SSGA 414 G+A+L L DL K G +VR + E L RL LA+ ++ + Sbjct: 447 ATGIAKLIVALTDLHFKGEGWQTLVRRCQ------------ECHDNL-RLTGLARDTTSS 493 Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEM 474 W E RE + L I V+ +L L+ + I+TSATL F L+E Sbjct: 494 NYVHWF--EHREKSIVL--SVTPISVAKELNEFLYAGVESTIMTSATLSIGEKFDYLRER 549 Query: 475 SGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV-EPSIDNEEQHIAEMAAFFRKQVESKK 533 GL A +++ SPF + EQ + IP E + + Q E +Q + Sbjct: 550 LGLP--ADTKYLRFASPFAYKEQALLYIPEGGFPETNAPDYGQKSCERILQILEQSRGRA 607 Query: 534 HLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 L+LF S AM+R ++TD + +LVQG R L+E + SVL+ + Sbjct: 608 ----LILFTSFSAMERAATWLTDKIDYRMLVQGRHSRKHLLEEFKA----DRDSVLLAVA 659 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF EG+D+ G+ LS V I K+ F PV+ E++K+ PF +P A L Q Sbjct: 660 SFWEGIDVAGEALSCVIIDKLPFEVPTDPVIQARMEYIKAAGGNPFMDFQVPRAVLTLRQ 719 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 VGRL+RS G + I D RL +K YGKR L +LP P+ Sbjct: 720 GVGRLMRSDRDRGLITILDIRLFSKFYGKRFLRSLPPAPV 759 >UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L5B4_MAGSM Length = 660 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 184/690 (26%), Positives = 303/690 (43%), Gaps = 95/690 (13%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 AL + + + PRA Q +M VA+ A + L +EA TG GKTL+Y++P +A+ Sbjct: 19 SALAQCLESYEPRAAQVRMAELVAR--AAHQQDLLIVEAGTGTGKTLAYMLPLLAMG--- 73 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTAL-ASTEP 132 K +VVSTA ALQDQI KDLPLL++++ +F+A GR Y+C LT + A+ Sbjct: 74 -KKVVVSTATKALQDQILEKDLPLLRQVVGS-RFSATLLKGRANYLCLHRLTQMRANRSL 131 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 + + A+L+ EQ ++GD D K ++ D+W LST+ Sbjct: 132 LRHEARAWLE-------AIEQWSSTTVQGDRDELK--------ELPERLDIWPELSTNGD 176 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE-----AVLPDPKNLLLVL 247 CL + C + C F AR +EA++VV NH L A + +LP+ + ++V Sbjct: 177 DCLGQECPDLQACYLFKARARAKEAQLVVVNHHLFFADLAVREGGFGEILPEYQ--VVVF 234 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFT--KLVATCMEQFRPKTIPPLAIPERLN 305 DE H +PDV ++ L++ F +L C + + L + L Sbjct: 235 DEAHQIPDV-----------VTRFFGLEVSNFQMLELARDCRREMDMVGMDDLDLLHHLT 283 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 EE L+ S + N+ ++A + E P L + + + L LAEL Sbjct: 284 V-IEERAALLRSAFPVENV-----RDALAPHHLQEEPGRALVMAE------QALHKLAEL 331 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 L G R +L + ++ + ++++ W R Sbjct: 332 LEPHLERSAGMASCGRRLEKLLIASGSIRTLDDPARVY---------------WYETRNR 376 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL---RSLNSFSRLQEMSGLKEKAG 482 ++ + V ++ +L+ + + TSATL + F + GL + Sbjct: 377 ----GVFLQASPLNVGLTMQEMLYPRVQCAVFTSATLATGQGEKGFHYFMQQLGLDAQVA 432 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG---MLV 539 L F++ Q ++ +PR EP+ A F +++ H L Sbjct: 433 T-CEQLPPVFDYGTQARLYLPRRLPEPTAPG-------FTAMFMEELVDLLHASRGRALC 484 Query: 540 LFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 LF S R M + + + + + VQG++P+ L+E+ + N E SVL+G +F EG+ Sbjct: 485 LFTSYRMMGQVQQLLPSRIPYPVYVQGERPKRALLEMFK----NHEASVLLGTSTFWEGV 540 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D+ G LS V I ++ F P D P+ + +S PF S+P A L Q GRL+ Sbjct: 541 DIPGAALSMVVIDRLPFTPPDDPISAARNRYCESEGGNPFMQLSVPQAILTLKQGAGRLL 600 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 R G + + D R+ + YGKR ++ LP Sbjct: 601 RRRSDRGVIAVLDTRISRRPYGKRFINGLP 630 >UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV0_ANADF Length = 635 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 194/663 (29%), Positives = 280/663 (42%), Gaps = 68/663 (10%) Query: 46 EGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP 105 E R+L EA TG GKTL+YL+P R ++VSTA LQ+QI+ KD+PLL++ Sbjct: 3 ERRYLVAEAGTGTGKTLAYLVPAALSGRR----VIVSTATKTLQEQIWGKDIPLLRERC- 57 Query: 106 DLKFTAAF--GRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDL 163 ++F AA+ GR Y C A PT A + L P + + A GD Sbjct: 58 GVEFAAAYLKGRSNYFCLARGAEFARA-PT---FAAREEAALWPRIEAWAR--ATETGD- 110 Query: 164 DTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVAN 223 R D+ W+ LS +C R C Y +C AR +++V++ N Sbjct: 111 --------RSEIDLPDQFHTWKDLSATAETCAGRECERYEDCFVTRARALAGQSDVLLVN 162 Query: 224 HALVMA--AMESE--AVLPDPKNLLLVLDEGHHLPDVARD--ALEMSAEITAPWYRLQL- 276 H L A AM + V P+ ++V DE H + +VA + L++S+ R L Sbjct: 163 HHLFFADLAMRTSRAGVEILPEYDVVVFDEAHAIEEVATEYFGLQISSYRVEELGRDALR 222 Query: 277 ------DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQ 330 DL + + E R A+ + L+A + + Sbjct: 223 AVGDRPDLASMMREATGELRRAGERFFQALADGLHASGAGAARGWGARAGGRGRGPRRRE 282 Query: 331 EAEHRFAMGELPDEVLEICQR-LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQM 389 E E L EVLE C+R A+L L L EL L D + R L +++ Sbjct: 283 EDES--VRAPLTSEVLEPCERDQARLDAALEALREL-LADAEAPPLAQIARRAGELRVEL 339 Query: 390 NRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 M E S+++ A+ G V + I V+++L+ L+ Sbjct: 340 AAVTAMKE-PSRVY----FAEVRGRGV---------------FLRAAPIDVAEELQARLY 379 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 R +I TSATL + F + GL + PF+ Q IV P EP Sbjct: 380 RRTDTVIFTSATLAAQGRFDYFRRQVGLAPEFDVDEARFPGPFDFPRQAAIVTPPTVPEP 439 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPR 569 N + A R E VL S R M + DL +L+QG++P+ Sbjct: 440 ---NAPGFLDAAAGTIRALAEVTGGRA-FVLCTSNRNMHALHGALRDLPYQVLLQGERPK 495 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 RL+E R E SVL SF EG+D+ GD LS V I ++ F P PVV Sbjct: 496 ARLLEAFR-----AEPSVLFATASFWEGVDVPGDALSLVVIDRLPFAPPGDPVVAARLRA 550 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 L++ R F +P+A+ L Q GRL+R+ G G V I D+RL+TK YG+ L LP Sbjct: 551 LEAEGRDGFSELQVPAAALALRQGFGRLVRTRGDRGLVAILDRRLVTKGYGRAFLATLPR 610 Query: 690 FPI 692 P+ Sbjct: 611 CPV 613 >UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CXN9_MYXXD Length = 662 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 195/692 (28%), Positives = 296/692 (42%), Gaps = 95/692 (13%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 AL+ +P + R Q QM V + A E +L EA TG GKTL+YL+P + R Sbjct: 20 ALEVALPAYEHRPEQLQMARAVERAFA--EHSYLLAEAGTGTGKTLAYLVPALLSGRR-- 75 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEPTQ 134 +VVSTA LQDQI+ KDLPL+++ + L+F AA+ GR Y+C A + Sbjct: 76 --VVVSTATKTLQDQIFFKDLPLMREKM-GLRFEAAYLKGRSNYLCLHRYDAFSKAPQF- 131 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKG---DLDTYKWDGLRDHTDIAIDDDLWRRLSTDK 191 ++EE + KLK + DT G R D+ W RLST Sbjct: 132 -------------GSREESRYWPKLKAWAEETDT----GDRSELDLPESFSAWSRLSTTS 174 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-------ESEAVLPDPKNLL 244 +C+ C Y C R+ ++A+++V NH L A + +E VLP + + Sbjct: 175 ETCVGTRCPQYETCFVTRMRKRAEQADLLVVNHHLFFADLALRSSGKRTEGVLPWYEAV- 233 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 + DE H L DA + YRL+ +L + + + Sbjct: 234 -IFDEAHAL----EDAASGHFGCSVSNYRLE-----ELARDAVASLKEDDARHAMLRALA 283 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 L A L L +G EA V + +AKL+ L G+ + Sbjct: 284 ARLRAGADALFAQAPRALGL---SGHEAS-----------VALRAEVMAKLSTPLEGVRD 329 Query: 365 LF--LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 L+ + ++ + R +M L E A+SS WA Sbjct: 330 ALAALSAFTVGEREPELAAITRRSDEMEEQLSFLEK----------AESSDH--VYWA-- 375 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 E+ G+ L+ I V+ +L ++ ++ ++ TSATL + + F GL + G Sbjct: 376 -EQRGK-GLFLRASPIDVAKELRERMYGALDTVVYTSATLAADSRFDFFANRMGLYGEDG 433 Query: 483 D-----RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 R +A+ SPF++ Q + +P +PS + AE + + Sbjct: 434 QPVTRVRTLAVPSPFDYPSQAALYLPTHLPDPSAPGFIEEAAEEIERLCEVTGGRA---- 489 Query: 538 LVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAE 596 VLF S R M R + V L L+QG++P+ +L+E R+ SVL SF E Sbjct: 490 FVLFTSLRNMVRAYELVAPRLPYQSLLQGERPKQQLLEAFRE-----TPSVLFAAHSFWE 544 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D+ GD LS V I ++ F P+V L+ PFE LP A+ L Q GR Sbjct: 545 GVDVPGDALSLVIIDRLPFASPGDPLVAARINQLQQRGEEPFEQYQLPHAALALRQGFGR 604 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 LIR+ G V + D+R++TK YG+ LD+LP Sbjct: 605 LIRTQSDRGIVAMLDRRIVTKAYGRVFLDSLP 636 >UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID=A6GN94_9BURK Length = 654 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 196/689 (28%), Positives = 292/689 (42%), Gaps = 85/689 (12%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 AL ++P F R Q +M V + E L +EA TG GKT +Y++P + R Sbjct: 17 ALARRLPGFSARESQIEMAQAVGNAI--ETQSALVVEAGTGTGKTFAYVVPALLSGRR-- 72 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVC----PRNLTALAST 130 +++STA LQDQ+++KDLPL+++ + + A +GR YVC R L Sbjct: 73 --VLLSTATKTLQDQLFNKDLPLVREAL-GVPVNVALLKGRQNYVCHFHLERALKEARLP 129 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 P + D L + ++ CA + D + W ++++ Sbjct: 130 SPREVDHLQKVKIFAGRTQSGDRADCAGVPEDSAVWSW------------------VTSN 171 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEAVLPD-PKNLLLVL 247 K +CL C EC ARR+ +AEVVV NH L +A A++ E + P ++V Sbjct: 172 KDNCLGGECPNASECFVNKARRDALDAEVVVVNHHLFLADLALKEEGIAELLPACDVIVF 231 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H LPD+A L + A C E R I Sbjct: 232 DEAHQLPDIATSLLGQAIS----------------TAQCQEFLRDVLIEGRTSSADAGDW 275 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 L + +L I + A A + V +C A L GL E+ + Sbjct: 276 DSVLRPMELALKEIRRIVGTEIDSARFTHAQFLALNGVAAVC---ADFENRLEGLIEM-I 331 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 + LS VR + M RA + + + W + AQ+ V +W + Sbjct: 332 SPLS--------VRNESWVKLMGRASELC-LRWQDWFSPATAQADEQSV-RWVSVSTHVV 381 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 Q F + VS+ +L + TSATL S GL E + + Sbjct: 382 Q----FCDSPLDVSNAFAKLYAEQPKAWVFTSATLSIKESLQHFTLQVGLDEC---QQLL 434 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 L SPF++ Q + +P P NE Q ++ + + + G+ L S RA+ Sbjct: 435 LPSPFDYESQALLCVPDNLPFP---NEPQFSKKLCDAVWPLLHASEG-GVFFLCTSHRAV 490 Query: 548 QRFLDYV------TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 ++ +Y+ +L LLVQG+ R L L + RV N VLVG SF EG+D++ Sbjct: 491 KQVGEYLRERIEKDELDWSLLVQGEASRAEL--LDQFRVLN--NPVLVGAASFWEGVDIR 546 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD L V I K+ F P D PV + E +K+ F+ SLP A+ L Q GRLIR Sbjct: 547 GDGLRLVIIDKLPFAPPDDPVFQAKSELIKNRGGNAFQDLSLPDAAIALKQGAGRLIRDE 606 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 WG ++I D+RL+ K YGK L +LP F Sbjct: 607 TDWGVLLIGDRRLVEKGYGKLLWRSLPPF 635 >UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1Z3_9DELT Length = 707 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 192/730 (26%), Positives = 307/730 (42%), Gaps = 84/730 (11%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE---------------GRHLAIEA 54 +I A L ++P F PR Q M VA TL G E GR + EA Sbjct: 3 EIFAAGGLLSRELPGFEPREGQLAMARAVAATLNGNEPSPGGAPEQPAAAHGGRLVLAEA 62 Query: 55 PTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAF 113 TG GKTL+YL+P + R+ +V+ST + LQ+QI +K++P +++ + P LK Sbjct: 63 GTGTGKTLAYLVPAVLSGRK----VVISTNTINLQEQILAKEIPFIRRHLAPGLKALCVK 118 Query: 114 GRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRD 173 GR Y+C L P + + D+ N E G D + GL D Sbjct: 119 GRQNYLCLYRWHQL-QINPQGRLFSKGVSDQ-DEQNLETIAAWLNETGTGDRGELRGLAD 176 Query: 174 HTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-- 231 D LW +S CL +C + +C R+ +++++ NH L + + Sbjct: 177 ------DSPLWAGISAAAGHCLGSSCPHGADCFITRLRQRAARSQLLIVNHHLFFSDLAV 230 Query: 232 ----ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCM 287 +E + P+ ++ DE HHL ++A ++ Y++ +DL L Sbjct: 231 RRFGHAEVL---PRYEAVIFDEAHHLENIATRHFGLALS----HYQI-IDLVRDLEGMAE 282 Query: 288 EQFRPKTIPPLAIPERLNAHCEELY--------------ELIAS-------LNNILNLYM 326 + R + + R A L+ ELIA+ + + + Sbjct: 283 ARLRERDRAGVVQAVRALAAEASLFLDFFPARRGRFPLRELIAAEPRWPELCSTLETAFA 342 Query: 327 PAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLI 386 + E E+ VL CQ L + + +L + + G HD + Sbjct: 343 AVIRPLEKLAGCEEIWGPVLRRCQDLLATFKTITSPPQLAVPSVGAAPGGHDA------M 396 Query: 387 LQMNR-ALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLE 445 Q R A G+ R + A + W R E+ QL + I V+ L+ Sbjct: 397 PQPPRDADGLATTAETPGRPSPPAPVAADSAIYWYERREKTVQLAV----SPIDVAGHLQ 452 Query: 446 RLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRM 505 L+R + + TSATLR+ N F ++ GL A + L +PF++ + + +P Sbjct: 453 EHLYRQVKAAVFTSATLRTGNDFRYVKARLGLP--ADCPALDLATPFDYAGRTLLYVPDQ 510 Query: 506 RVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM-QRFLDYVTDLRLMLLVQ 564 NE + A R+ + + +L LF S AM Q + + +LVQ Sbjct: 511 DF--PAPNEAAYPARARQLMREIIGHSRGRALL-LFTSVNAMHQAAAELAGKVPYPVLVQ 567 Query: 565 GDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI 624 G+ PR L+E R R RSVL+ + SF EG+D+ G+ LS V I K+ F PV++ Sbjct: 568 GEAPRSALLEEFRSRT----RSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIM 623 Query: 625 TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684 + +++ PF +P A L Q VGRL+RS+ G + I D RL +K YG+ L Sbjct: 624 ARVDKIRAEGGNPFFDFQVPRAVLTLRQGVGRLLRSNADQGVLAILDVRLFSKGYGRTFL 683 Query: 685 DALPVFPIEQ 694 +LP P+ + Sbjct: 684 KSLPPSPLSR 693 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 199/713 (27%), Positives = 311/713 (43%), Gaps = 87/713 (12%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 AL + R Q +M VA T +G L EA TG GK L+YL+P A Sbjct: 245 ALGRAFAGYEQRDQQVRMSEAVADTF--NQGGALIAEAGTGTGKGLAYLVPAALHAARRG 302 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPD----LKFTAAF--GRGRYVCPRNLTALAST 130 + +V+ST + LQDQ++ KD+P L++++ + FTAA GR Y+C + L Sbjct: 303 ERVVISTNTINLQDQLFFKDIPALQQVMSNGADEAPFTAALLKGRSNYLCLKRYKDLRRD 362 Query: 131 EP-TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 + D+ A L +L E R +L ++ + W R+S Sbjct: 363 QRLMSDDVRALLKVQLWLPTTESGDRA-----ELPLHEGENAS-----------WNRMSA 406 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 C C ++ C FF AR++ + A +V+ NHAL+MA + E + P + L++DE Sbjct: 407 AWEQCTGPRCSEFQRCFFFKARKQAEAAHLVIVNHALLMADLAVENDVIPPYD-YLIIDE 465 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTK--------LVATCMEQFRPKTIPPLAIP 301 H+L DVA D L + + L D+FT+ L++ FR I Sbjct: 466 AHNLEDVATDQLSFNVDREGLLAFLD-DIFTEGQAQVVGGLLSELPNHFRESMATRTDI- 523 Query: 302 ERLNAHCEELYELIA----SLNNILNLYMP-AGQEAEHRFAMGELPDEVLEICQRLAKLT 356 +R +A + L +A ++ N+ M +EAE L + + +R Sbjct: 524 DRADAIADTLRPAVARARDAVYGCFNVLMTFIKREAELTAYDSRL--RITDSLRRKPSWA 581 Query: 357 EMLRGLAEL--FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ---- 410 E+ R L L+ + E G RL L++ + A + E + + R+ +L + Sbjct: 582 EVERAWDALSVALHAVGEGLG-----RLETLLIDLKDA-ELLEYDALMLRVQALRRYATD 635 Query: 411 ---------SSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 + GA W T + L L + V+D L L+ + I+TSA Sbjct: 636 VRVNIGHILTGGAEEKVTWLTHDRMRDTLTL--SAAPLSVADVLRTNLFEAKTATILTSA 693 Query: 461 TLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAE 520 TL +F+ ++E GL + LDSPF++ Q + IP+ EP+ N Q E Sbjct: 694 TLSVGGNFAFIRERIGLDHAEE---LTLDSPFDYTRQALLYIPQDIPEPN-QNGYQRALE 749 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVEL 575 A + + MLVLF + A+++ + D + +L QG D R L+E Sbjct: 750 QAIIDLARATGGR---MLVLFTATNALRQTYRAIQEPLEDAGIAVLGQGIDGSRRSLLE- 805 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 R +VL+G SF EG+D+ GD LS + I K+ F P+ E Sbjct: 806 ---RFKEFPGTVLLGTSSFWEGVDVVGDALSVLVIAKLPFSVPTDPIFAARSEQFDD--- 859 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 PF ++P + Q GRLIRS G V + D+RLLTK YG+ L++LP Sbjct: 860 -PFNQYAVPQSILRFKQGFGRLIRSREDRGVVAVLDRRLLTKKYGQMFLESLP 911 >UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A8_9GAMM Length = 692 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/260 (38%), Positives = 151/260 (58%), Gaps = 10/260 (3%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAI-EAPTGVGKTLSYLIPGI 69 +A ++ + + + DF PR Q+QM +A ++ + + +A+ EAPTGVGKTL+YL I Sbjct: 2 VATIFERIGQVVADFKPRPQQQQMSEFIAASMQKKAQQRVAVVEAPTGVGKTLAYLSGTI 61 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALA 128 A +K LV+STA V LQ Q+ KDLPL + ++F GR RYVCP L+ LA Sbjct: 62 EAAINNKKVLVISTATVNLQQQLIQKDLPLFSSALEHPIRFVQVKGRRRYVCPSKLSQLA 121 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 T P QQ+L +DD+ +L + D +WDG RD ++ +LW+++S Sbjct: 122 -TAPEQQELGIDIDDKY--KRVLHMAHAKQLLSEWDQERWDGDRDSRSDKLEAELWQQIS 178 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM--AAMESEAVLPDPKNLLLV 246 TD C ++C +Y CP++ RRE+ A+V+VANH L++ A + VLP+P+ L V Sbjct: 179 TDSEGCAGKSCSFYLRCPYYKLRREMLSAQVIVANHDLILSDADLGGGLVLPNPEEALFV 238 Query: 247 LDEGHHLPDVARDALEMSAE 266 DE H+LP R AL+ +A+ Sbjct: 239 FDEAHNLP---RKALDHAAK 255 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 152/288 (52%), Gaps = 7/288 (2%) Query: 410 QSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 Q P +W ++E+ Q L H + + L+R LW +++TSATLR + F Sbjct: 409 QEDRPPNVRWLSQEQFAKQQTLVIHAGPMTAAYFLDRSLWTRAYSVVLTSATLRGMGLFH 468 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 R + GL + F+A+ SPFN+ +Q + +P M+ P+ + ++Q E+ + Sbjct: 469 RFRMDCGLHRFSEQHFLAVPSPFNYSDQATLNLPHMQFLPN-EQQQQWRQEVVKQLASII 527 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGD--QPRYRLVELHRKRVANGERS 586 + + LVLF S M+ + L +L+QGD P+ +V+ H +++ G+ S Sbjct: 528 DVDE--ATLVLFTSREVMEAVYRQLPQRLTTKILIQGDTLSPK-NMVQRHIRQIEAGKGS 584 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 ++ G+ FAEG+DL G+L + V I K+ FP P+ + EW+ PF SLP+ Sbjct: 585 IIFGMDRFAEGIDLPGNLCTHVIITKLPFPVFTRPIEQAKQEWIIRKGGQPFTALSLPAV 644 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 S LIQ GRL+R G + I D+RLL+K YGK+LL LP + ++Q Sbjct: 645 SVKLIQACGRLLRKETDTGRITILDRRLLSKGYGKQLLQHLPDYRLQQ 692 >UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V4E9_9PROT Length = 648 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 193/698 (27%), Positives = 306/698 (43%), Gaps = 116/698 (16%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L ++ F PR QR+M VA + + L EA TG GKT +YL+P + + Sbjct: 15 LATEVSSFRPREQQREMALAVADAI--KNNAILVAEAGTGTGKTFAYLVPALLGGGK--- 69 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNL--TALASTEPTQ 134 +++ST LQDQ++ KDLP+++ + + GR Y+C +L TA T+ Sbjct: 70 -VIISTGTKNLQDQLFQKDLPMVRDALKAPVSIALLKGRANYICHYHLERTAHDGRFATR 128 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 +D+ + + K+ AK+ D G+ D+ + +W ++++ + +C Sbjct: 129 EDI----------KHLGKIKKYAKITSTGDK---SGV---ADVPENAPIWLQVTSTRDNC 172 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD-------PKNLLLVL 247 L + C ++EC AR E +A++VV NH L A + +L D P ++ Sbjct: 173 LGQECPNHKECFVLHARTEAMKADIVVVNHHLFFA----DVMLKDDGVAELLPACNTVIF 228 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA-TCMEQFRPKTIPPLAIPERLNA 306 DE H LP+ A + T L L +++ A T + F P L Sbjct: 229 DEAHQLPETASLFFGENLSTT---QLLDLAQDSRIEALTSAKDFAP-----------LPK 274 Query: 307 HCEELYELIASLNNILNL--YMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 C+EL + L + MPA A G D +L L+E L+ + Sbjct: 275 ACDELDKAARDLRLVFKKEGRMPA-------IATGSFKD----FAPQLKNLSEKLKQI-- 321 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA--TR 422 ND+ E Q R+ G+ W+ A Q+ + W Sbjct: 322 ---NDMLES--------------QAARSEGL----ENCWQRA---QAFSLLLKNWQDDKA 357 Query: 423 EEREGQLHLWFHCVGIR-----VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ-EMSG 476 +++ L ++ H + + +++ E+ + + I TSATL FS Q EM Sbjct: 358 DDKVRWLEVYHHSLQLNATPLSIAEIFEKQIGSTARAWIFTSATLAVKQDFSHYQGEMGL 417 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 LK K DSPF++ +Q + +P EP+ + + + + A +E+ + Sbjct: 418 LKAKTA----CWDSPFDYEKQALLYVPSGLPEPNSEGYTEAVIQAAL---PMIEASRGRA 470 Query: 537 MLVLFASGRAMQRFLDYVT---DLR---LMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 L LF S RAMQR + +T DLR LL+QG+ R L+ R+ +VL+G Sbjct: 471 FL-LFTSLRAMQRAHEILTAEFDLRGWSYPLLLQGEGSRNELLGRFREH----GNAVLLG 525 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 QSF EG+D++G+ LS V I K+ F P D PV+ + R F LP L Sbjct: 526 SQSFWEGVDVRGEALSLVIIDKLPFAPPDDPVLAARIAQISKQGRNAFMEYQLPRTIITL 585 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 Q GRLIR G ++I D RL+TK YGKR+ +LP Sbjct: 586 KQGAGRLIRDENDRGVLMICDPRLITKQYGKRIWQSLP 623 >UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6D5_DESAS Length = 957 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 183/707 (25%), Positives = 313/707 (44%), Gaps = 74/707 (10%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L +Q P + R Q QM VA+TL + L EA TG GK+++YL+P + + + ++ Sbjct: 262 LAKQHPHYEHRPQQLQMSVAVAQTLNKQS--LLLTEAGTGTGKSMAYLVPAVLWSAQNRE 319 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQ 135 +VVST + LQ+Q++ KD+P+L+++ F AA +GR Y+C + + S+ Sbjct: 320 RVVVSTHTINLQEQLWFKDIPMLQQMFGK-SFRAALVKGRQNYLCLSRWSEVFSSTDNHS 378 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 A + + Q GD +G + D W ++S D C Sbjct: 379 RWEALFYSRILVWLTKTQT------GDRSEINLNG--------AEYDYWSKISADSDRCK 424 Query: 196 NRNCYYYRECPFFV-ARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDEGHHL 253 C+++++ F A++ + +++++ NH+L+ + ++ E +LP L V+DE HHL Sbjct: 425 GNQCHWFQKACFVSRAKKTAENSDLIIINHSLLCSDLQVENRILPSYGPL--VIDEAHHL 482 Query: 254 PDVARD--ALEMSAEITAPWY----RLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 +VA + +S W +L + L A F K E + H Sbjct: 483 ENVATEHFGYMISESSIKRWLESTDKLAIKLSHNPAAEANNNFDQKIYAVRKSVEDIR-H 541 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEIC-QRLAKLTEMLRGLAELF 366 +Y + + +N Y EA ++ A G +C RL K G +L Sbjct: 542 ASGVYFNLLRTEHSINDYAEEPVEAANQNAGG--------LCVSRLYKEA----GQEQLL 589 Query: 367 LNDLSEKTGSHDIV-RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV--------- 416 + + + TG ++ L +++L++ +E ++ SL + G + Sbjct: 590 VEEDNLLTGFKILMDNLKKIMLKLEIWAAQYEKWVNTAKIFSLHLNLGTQLFASIEFILT 649 Query: 417 ------TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 W + + ++ I + L L+ S +I+TSATL SF Sbjct: 650 HSDPNFVYWMEKNYFQSNTYITLRSSPIDIGKLLYEKLFASKKAVILTSATLSIAGSFDY 709 Query: 471 LQEMSGLK---EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 +E GL E+ + + +DSPFN+ +Q K+ + + E+ + E+A K Sbjct: 710 FKERVGLNLYTEEISE--LQIDSPFNYGKQAKLFLTSDLPSQNEVPEQFYHTELANIIEK 767 Query: 528 QVESKKHLGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQG-DQPRYRLVELHRKRVAN 582 V + LVLF S R+++ R + D ++LL D R L+E Sbjct: 768 LVNVSQG-KTLVLFTSHRSLKQTYLRLKPVLEDKEILLLGHNIDGSRSALIE----EFVR 822 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 +++VL G SF EG+D+ GD LS V I K+ F P++ E L + F S Sbjct: 823 NKKAVLFGTASFWEGIDIPGDSLSSVIIVKLPFWAPSIPIIEARLESLIKQGKNGFWEFS 882 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 LP A Q GRLIRS +G V++ DKR++ K YG+ L++LP+ Sbjct: 883 LPQAVIRFKQGFGRLIRSSRDYGAVIVLDKRIIQKKYGRYFLNSLPL 929 >UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4LDA1_TOLAT Length = 672 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 189/686 (27%), Positives = 291/686 (42%), Gaps = 90/686 (13%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + IP F PR Q M V+K + E L +EA TG GKT +YL+P + + K Sbjct: 27 LAKAIPGFAPRQAQVHMAEAVSKAI--ETAGRLLVEAGTGTGKTFAYLVPAL----DSGK 80 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQD 136 +++ST + ALQDQ+Y +DLP L + K A GR Y+C L L +Q+ Sbjct: 81 RVIISTGSKALQDQLYERDLPTLLLAMQYGKPVAQLKGRSNYLCTYRLALL------EQE 134 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + D + Q + + GD+ GL++ I +++ +CL Sbjct: 135 MHFLAADVFADLPKVRQFKARTVSGDVADIP--GLQEQAPI------LPFVTSTNDNCLG 186 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE-----AVLPDPKNLLLVLDEGH 251 R C Y C ARR+ +A+VVV NH L A M + +LPD + + DE H Sbjct: 187 RECPDYENCFLVKARRKALDAQVVVINHHLFFADMSVKDTGFGELLPDAD--VYIFDEAH 244 Query: 252 HLPDVARDAL-EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 LPD+A E + +L L +L A M Q +RL C+ Sbjct: 245 QLPDIASQYFGESLSSRQLSDVADELRLAYRLEAKDMAQLGKAA-------DRLVQDCQA 297 Query: 311 L---YELIASLNNILN-LYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 + + + S N+ + L P Q R E ++ C + KL + RG Sbjct: 298 MRLAFGVDPSRGNLRDVLVQPQMQRELQRLK------ESIKFCYDVCKLA-LGRGEQ--- 347 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 +N+ E RL + ++ + EA + W + T + Sbjct: 348 INNCFE--------RLAGFLTTVDHVTAITEAGAAYW---------------YETTKR-- 382 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 H + + ++++ + + R I TSATL F + G+ + Sbjct: 383 ---HFTLNVTPLSIAERFAQEVMRVGCSWIFTSATLTVGEEFDYFSQRMGVGDADT---C 436 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 LDSPF++ Q + +PR + SI +AE +QV G L S + Sbjct: 437 LLDSPFDYAHQSLLCVPRNLPDTSIYQRATQLAERLLPVIEQVPG----GCFFLCTSYNS 492 Query: 547 MQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 + + + D L +LVQGD + R++ VA+G +VLV SF EG+D++G L Sbjct: 493 VNQIAQVLRDKLDRTVLVQGDDNKQRILA---DFVADGH-AVLVATSSFWEGVDVRGAAL 548 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 S V I K+ F D P++ E + PF+ LP A L Q VGRLIR + G Sbjct: 549 SCVIIDKLPFTSPDEPLLKARMEDCRMQGGDPFQQLQLPEAVIVLKQGVGRLIRDYQDRG 608 Query: 666 EVVIYDKRLLTKNYGKRLLDALPVFP 691 +++ D RL+ K YG L +LP P Sbjct: 609 ILILCDPRLVNKPYGAAFLKSLPPIP 634 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 186/715 (26%), Positives = 316/715 (44%), Gaps = 80/715 (11%) Query: 14 WYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 W++ + E + RA Q +M+ + +T+ EE IEA TG GKTL+YL+P +A+ Sbjct: 250 WWQNVME---GYEVRAGQTEMMTYIYETM--EERAFGLIEAGTGTGKTLAYLLPAAFLAK 304 Query: 74 EEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEP 132 E+QK +++ST + LQ+Q+ K++P L++++P + GR Y+C + L Sbjct: 305 EKQKKVIISTQTIQLQEQLIKKEVPTLERLLPFPIHVVILKGRSHYLCLQKFARLL---- 360 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAK---LKGDLDTYKWD----GLRDHTDIAIDDDLWR 185 Q+D +N + +K L L+T D L H++ W Sbjct: 361 -QED-----------HNDAYDRTVSKAQILVWLLETKTGDVEELSLASHSN-----RFWN 403 Query: 186 RLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLL 245 +++D SC + C ++ C + AR + ++A++++ NH+L++A + + L PK Sbjct: 404 DIASDAYSCNSSKCAWFSRCFYQHARNDARKADLIITNHSLILADILTSNQLI-PKYDYA 462 Query: 246 VLDEGHHLPDVAR-------DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL 298 +LDE HHL D A D L ++ I + L ++ +R T+ Sbjct: 463 ILDEAHHLEDTATEQFGQQLDYLSLTHLINRMGSKRGEGLLRQVYDEIYNDYR-DTVEK- 520 Query: 299 AIPERLNAHCEELYELIASLNNIL---NLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 I E E YEL LN+ + N A + E V+E R KL Sbjct: 521 -IEETGTKVKFEWYELFLLLNDYVINSNTNFNERGRATVKINAKENSWYVIEEAARRCKL 579 Query: 356 T--EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 E L + + D+ E S+ I +R G++ + L L Sbjct: 580 YLEEWLANINRIV--DILETIESNYNDAFTSFI---DRVEGVYSS------LIKLLLEQD 628 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 + W + + + ++ I VS+ L L ++ +I+TSATL N F+ + Sbjct: 629 DHMIYWIEADTKGPKQAIYIKGRPINVSESLADLFFQKKDSVILTSATLTVNNKFNYMIR 688 Query: 474 MSGLKEKAGDRFVA---LDSPFNHCEQGKIVIPRMRVEPSI-DNEEQHIAEMAAFFRKQV 529 GL D +V +DSPF+ +Q K+++P P I D E+ AE ++ Sbjct: 689 RLGL----SDFYVKTKHIDSPFHWDKQVKLMVPTDM--PLIQDAGEKAYAEATVMQIYRI 742 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVTDL---RLMLLVQGDQP--RYRLVELHRKRVANGE 584 MLVLF S ++ +Y+ ++ ++ QG R +L K Sbjct: 743 AEITKGKMLVLFTSYDMLKNCYNYLKEMLDDEYAIIAQGVHSGNRTKLT----KNFQQFN 798 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 +++L+G SF EG+D+ G LS + I ++ F P D PV + +K PF +LP Sbjct: 799 QAILLGTSSFWEGVDIPGSDLSIIVIVRLPFTPPDDPVFQAKSTEMKREGLNPFMKLALP 858 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 A Q GRL+R+ G V++ D+R+ YGK + +LP P+ + + E Sbjct: 859 QAILRFKQGFGRLVRTTHDRGAVIVLDRRITNTKYGKLFIKSLPEIPLVEKSLDE 913 >UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2JIT4_BURP8 Length = 757 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 184/667 (27%), Positives = 290/667 (43%), Gaps = 92/667 (13%) Query: 50 LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKF 109 L +EA TG GKT +YL+P + + ++VST LQDQ++ +D+P ++ + Sbjct: 138 LIVEAGTGTGKTYAYLVPAMLWGGK----VIVSTGTKHLQDQLFLRDIPTVRDALAVPVS 193 Query: 110 TAAF-GRGRYVCPRNL--TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY 166 A GR Y+C L TA P++Q+ ++L D + R AK+ D Sbjct: 194 VAMLKGRANYLCHYYLQRTADNGRLPSRQET-SYLQDII---------RFAKITRTGDKA 243 Query: 167 KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHAL 226 + + + + W +++ + +CL + C +Y++C ARRE Q+A++VV NH L Sbjct: 244 ELASVPETAAV------WSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHL 297 Query: 227 VMA-AMESEAVLPD--PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLV 283 A M + + + P ++ DE H LP+ A L ++ + L+L V Sbjct: 298 FFADIMLRDTGMAELLPTANTVIFDEAHQLPETA--TLFFGETLSTTQF---LELARDSV 352 Query: 284 ATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 A + R + +L A+L A +E R ++G+LPD Sbjct: 353 AEGLGHAR---------------DAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPD 397 Query: 344 E-----VLEICQ-RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE 397 + LE + L L L G +E +E G+ L R ++ L + Sbjct: 398 DHPLFPALEAVETELDALASALAGQSER-----AESLGA-----LLRRARELQEVLAGWT 447 Query: 398 AQSKLWRLASLAQSSGAP-------VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR 450 A + + + AP +W QLH V + Q Sbjct: 448 APPTEAERDAASDAGAAPEKSDPNEKVRWIEVFSHTVQLHETPLSVAPIFAKQRA----- 502 Query: 451 SIPHI-IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 +P + TSATL F+ GL + R + L SPF++ QG + +PR +P Sbjct: 503 GVPRAWVFTSATLSVRGDFTHYAAQMGLNSR---RSMTLPSPFDYGTQGLLYVPRNLPQP 559 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL------RLMLLV 563 S + + A +E+ G+ +L + RA+ R + D+ + LLV Sbjct: 560 SSPMFTDAVFDAAL---PAIEASGG-GVFMLCTTLRAVDRIASKLRDVIESRGWNMPLLV 615 Query: 564 QGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 QGD R L++ R ++LVG QSF EG+D++GD LS V I K+ F P D PV+ Sbjct: 616 QGDASRTELLDRFRSY----GNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVL 671 Query: 624 ITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 + L PF V LP A L Q GRLIRS G ++I D RL+ K YG+R+ Sbjct: 672 SARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSETDRGVLMICDTRLVDKPYGRRI 731 Query: 684 LDALPVF 690 +LP F Sbjct: 732 WQSLPPF 738 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 196/714 (27%), Positives = 314/714 (43%), Gaps = 91/714 (12%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 P + PR Q +M+ V ++L E L +EA TG GK+L YL+P A E + ++V Sbjct: 252 FPGYEPRTGQLEMMRHVYQSLDQETP--LLVEAGTGTGKSLGYLVPAAHYAIEHETPIIV 309 Query: 82 STANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 ST + LQ+Q++++DLPLL+++ + T GR Y+ R F Sbjct: 310 STHTIQLQEQLFARDLPLLRQLFEAPVDITLLKGRSNYMDLRKFEF-------------F 356 Query: 141 LDDELTPNNQEEQKRCAKL------KGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 L + P N K + GDL+ G +IAI + + +D S Sbjct: 357 LSETEEPYNFTLAKAILLVWLTQTETGDLEEVSLPGGAAQGNIAIK----QLIQSDSQSQ 412 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDEGHHL 253 L R +Y F A R ++A ++V NHAL+ + ++ EA VLP K L+LDE H + Sbjct: 413 LGRFDPWYSRDFFHHAVRRAKQATIIVTNHALLFSDIQYEAGVLP--KGCPLILDEAHQI 470 Query: 254 PDVAR-------DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 +VA D + L T+L++ +Q+ + E + A Sbjct: 471 EEVASHHFGLVFDGHSFDRIFRQLGFSSDKKLLTRLISLS-DQY--------DLTELVEA 521 Query: 307 HCEELYELIASL----NNILNLYMPAGQEAEHRFAMGE--------LPDEVLEICQRLAK 354 H E + E + L + +L + G E R E D+ + Q AK Sbjct: 522 HSETIDETLTKLLEEADGLLTIIQAYGLELASRKERREGRVTVRFKRLDQSMRAVQESAK 581 Query: 355 LTEM-LRGLAELF--LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 E+ LR L + ++ L H R ++ + +G E + ++ ++ Sbjct: 582 RVELVLRRLRQAIRAIHKLFHDQREHMSYRERSVVADLKTVIGQLEEVEQ-----AIFET 636 Query: 412 SGAP---VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 AP W + +L + I +S++L R ++ S I+TSATL N F Sbjct: 637 MLAPHDETVSWIETTAKNRKL-TRIYTQPIDISNRLHREVF-SKRTCILTSATLTVSNKF 694 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR----MRVEPSIDNEEQHIAEMAAF 524 +++ GL E RF+ + SPF + E+ +++IP ++ P E IA+ Sbjct: 695 QFIEQRLGLSELETRRFI-VPSPFGYAEKVRLMIPTDLPLLQDVPQATYSEV-IADAIIR 752 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQG--DQPRYRLVELHRK 578 + E + MLVLF S +++ D T + R LL QG R RL+ K Sbjct: 753 IAEVTEGR----MLVLFTSNEMLRQTHD-ATKMALPERFTLLSQGITQGSRQRLM----K 803 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 + + +L G SF EG+D+ GD LS + I ++ F P D P+V E ++ + F Sbjct: 804 QFKQLDACILFGTASFWEGVDVPGDDLSCLVIVRLPFAPPDQPIVQARSEQIEQQGKSSF 863 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 SLP A Q GRLIR+ G V ++D+R+ T YGKR + +LP P+ Sbjct: 864 FEYSLPQAIIRFKQGFGRLIRTTNDRGVVFVFDRRIETTRYGKRFVTSLPNVPL 917 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 197/723 (27%), Positives = 313/723 (43%), Gaps = 103/723 (14%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L EQIP + R Q +M+ VA LAG +L +EA TG GK+L+YL+P I A ++K Sbjct: 240 LAEQIPGYEYRPQQVEMLRAVASALAGNH--YLTVEAGTGTGKSLAYLLPAIYWACSQRK 297 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEPTQQ 135 + ++T ++LQ+Q++ KDLP L++++P F AA GR Y+C R L + P + Sbjct: 298 RVAIATHTISLQEQLWQKDLPQLRELLP-FSFKAALVKGRSNYICRRKLRDYLANPPAGE 356 Query: 136 DLLAFLDDEL------TPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 F L T + E K + +G +K+ L+ Sbjct: 357 AERLFAMRVLRWLEVTTSGDWSEMKLTPEEEG----FKF-----------------ALAA 395 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-SEAVLPDPKNLLLVLD 248 D +C C + EC ARRE + A +++ NH+L+++ + + VLPD L++D Sbjct: 396 DTETCTGSACPFNDECFVNAARREAEAANILILNHSLLLSDIRLNNQVLPDYP--YLIID 453 Query: 249 EGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR--------PKTIPP--- 297 E HHL + A + L S + +LF + + + + + +PP Sbjct: 454 EAHHLEEAATEHLGSSVS------QASCELFFRRLGRGEQAYSFLGRVRNLARRLPPEGN 507 Query: 298 -----------LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP--DE 344 L + L A +E +E + L++ + AG + E P D Sbjct: 508 LELADFLEDMELTVTATL-AGWQEFWESLGRLSDAAR-WEEAGYTLRFTSRLKETPAWDN 565 Query: 345 VLEICQRLAKLTEMLRGLAELF--LNDLSEKTGSH----DIVRLHRLILQMNRALGMFEA 398 +L + L E L GLA L++L G+ D ++ Q + LG Sbjct: 566 LLSV---FGSLEENLSGLASRLERLSELLSAAGAGEFAADAGNFAAVVAQYSYDLG---- 618 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 + + A W + GQ L + + L LL+ +I+T Sbjct: 619 --------QILDADPATSVSWLEKNN-HGQYIL--RSAPLDIGPLLAELLFSRKQAVILT 667 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 SATL NSF + +GL+E DR V+ + SPF++ Q + R P + Sbjct: 668 SATLTVNNSFDYYHQQTGLQELPADRVVSCQVSSPFDYRSQALVCSIRGLPNPGQLKDAD 727 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLR---LMLLVQG-DQPRYR 571 + + + LVL S R ++ + ++ DL +L QG D R R Sbjct: 728 YARAITPVLTAICPAVGGRS-LVLCTSHRFLREVYELLSADLNGSGYRVLAQGIDGSRSR 786 Query: 572 LVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 L+E R+VL+G S+ EG+DL GDLL V I ++ FP P + E L Sbjct: 787 LLE----EFIQTPRAVLLGANSYWEGIDLPGDLLRCVIIPRLPFPSPGIPTLAARMEHLA 842 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 + + F SLP A Q GRLIR G +VI D+RLL++ YG+ + +LP Sbjct: 843 ARGQNAFATLSLPQAIIRFRQGFGRLIRRASDRGVLVILDQRLLSQRYGRLFIQSLPPVT 902 Query: 692 IEQ 694 +E+ Sbjct: 903 LEE 905 >UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLQ3_SYNFM Length = 646 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 186/686 (27%), Positives = 293/686 (42%), Gaps = 89/686 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L E + F R Q +M V + L L +EA TG GKT +YL+P I K Sbjct: 11 LAENVTHFEFRPSQLEMAEAVLEALGARSP--LVVEAGTGTGKTWAYLVPAILSG----K 64 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 VVST LQDQI +D+P LK+ + P L+ GRG Y+C R S +PT + Sbjct: 65 RTVVSTGTKTLQDQILDQDIPFLKRTVYPKLRAVCLKGRGNYLCHRRFKDF-SYQPTLWN 123 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 DE ++ ++ GD W + HT W + + CL Sbjct: 124 -----KDEAKLWSRFQKWATRTRTGDRAEISWLPDQFHT--------WNEVCSAGEHCLG 170 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA---VLPDPKNLLLVLDEGH 251 + C + C R E +A +VV NH L A A+ +A VLP+ + + DE H Sbjct: 171 QQCSDVQRCFVTRLRAEAAQAHLVVVNHHLFFADLALRDKADTGVLPEYDAV--IFDEAH 228 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLF--TKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 L DV ++ +Q + + +L +F+ +T R + Sbjct: 229 QLEDV-----------MGQYFGIQFNSYGLMELTRVLQREFKKET----GASHRFH-DAR 272 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFA--MGELPDEVLEICQRLA----KLTEMLRGLA 363 + + + LN +L+ ++ + ++ RF M + ++ C +L +L M+ Sbjct: 273 RIVQQLEVLNRLLHRHLFEVRGSQGRFPLDMSRMGKNFVQSCNQLIHALDELAPMIAPAE 332 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 +L L+ HR ++ A+ M LAQ + V + Sbjct: 333 DLPLS----------FEAYHRRASDLSGAVRML-----------LAQEDESLVYWYEV-- 369 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 GQ L+ + I V R + +I+TSATL SF +++ G+ + Sbjct: 370 ---GQNALFLNATPIEVCSIFRRRVLTPNRPVILTSATLSVAGSFDFVRQSLGIAPDS-- 424 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + + L SPF + EQ + IPR P+ + + IAE + ++ K L LF S Sbjct: 425 KSIRLPSPFAYAEQTMLYIPRRFPAPNEHDFCRQIAEQSV----EILLKTRGRALFLFTS 480 Query: 544 GRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 R M + D L +LVQG +P+ L+ ++ + SVL SF +G+D+ G Sbjct: 481 YRNMNEVHQLLRDRLPYPILVQGQKPKRALLAEFKESIG----SVLFATSSFRQGIDVPG 536 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + LS + I K+ F D P+ +++ + F +P A L Q VGRLIRS Sbjct: 537 EALSCLLIDKLPFEVPDDPLAAARMDFITRQGKSSFFGYQVPRAVIQLKQGVGRLIRSSS 596 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALP 688 G +VI+D RLL KNYG+ L +LP Sbjct: 597 DRGLIVIFDVRLLQKNYGQIFLKSLP 622 >UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium RepID=A5TWB3_FUSNP Length = 822 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 172/711 (24%), Positives = 300/711 (42%), Gaps = 80/711 (11%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L ++I F R Q +M + + E R + IEA TG GKTL+YLIP I A +K Sbjct: 134 LAKEIKGFEYRKEQEEMAHYIQDAI--NEDRKIIIEAGTGTGKTLAYLIPAIKWAVANKK 191 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 ++++T + LQ+Q+ KD+PL K II D + GR Y+C R L+ D Sbjct: 192 KVIIATNTINLQEQLLLKDIPLAKSIIKEDFSYVLVKGRSNYLCKRLFNELSIGRSI--D 249 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + F + +E+ + K T G + + D+W + + CL Sbjct: 250 IETF-----SMEAREQIEYILKWGNKTKT----GDKAELPFEVYPDVWELVQSTTELCLG 300 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-------VLPDPKNLLLVLDE 249 + C Y +EC + R E EA+++++NH + A + A L P+ +++ DE Sbjct: 301 KKCPYRKECFYMKTRIEKMEADILISNHHVFFADLNVRAETDFDSEYLILPRYDMVIFDE 360 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER------ 303 H++ VAR S E++ + L+ + ++ I E+ Sbjct: 361 AHNIESVARSYF--SVEVSKISFSRLLNRIYQKKNKRKKEKSALIRVEDTIDEKDLEDSQ 418 Query: 304 -----LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 LNA EE I+ L NI + Y ++ + + ++ E Sbjct: 419 QYIYLLNALKEE----ISVLQNIGDEYFEEIRKIYETNTEAPIRKSLNNFEMTKSRFLET 474 Query: 359 LRGLAELFLNDLSE----KTGSHDIVRLHR----LILQMNRALGMFEAQSKLWRLASLAQ 410 LR ++F + L++ ++++ + ++ N L MF+ ++ + + Sbjct: 475 LRDKKDIFQSKLADFLTLMMSFNNVIDEEKDKNPEVINFNNHLKMFKTYIDSFKFINSFE 534 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 W + + L + ++ +L +L+ ++ +I SAT+ + +F+ Sbjct: 535 DDN--YIYWLDINSKRTNVVL--TATPLNIAKKLSSVLFDNLDRLIFASATIVANGNFNY 590 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 ++ GL E+ + + SPFN+ EQ + IP + Q + AF + Sbjct: 591 FKKSLGLDEEDCIEAI-IKSPFNYDEQMSVYIP---------TDIQDSENINAFV---TD 637 Query: 531 SKKHLGMLVLFASGRAMQRFLDY-------------VTDLRLMLLVQGDQPRYRLVELHR 577 + K + ++L +G+A F Y + D + + GD+PR +L+ Sbjct: 638 ASKFILDILLKTNGKAFILFTSYTMLNQIYYSISKKLIDKGFEVFLHGDKPRSQLI---- 693 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 K E +L G SF EG+D++G+ LS V I K+ F PVV + ++ Sbjct: 694 KEFKEAENPILFGTTSFWEGVDVQGENLSNVIITKLPFLVPTDPVVSAISKKIEEDGGNS 753 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 F LP A Q VGRLIR G + I D R+L K YG ++ALP Sbjct: 754 FTDFQLPEAIIKFKQGVGRLIRKKTDSGNIFILDSRILKKRYGSLFINALP 804 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 189/720 (26%), Positives = 316/720 (43%), Gaps = 81/720 (11%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 +++ IP F R+ Q M+ V ++ +EA TG GKTL+YLIP + A + + Sbjct: 246 MKQSIPGFELRSTQMDMMKFVEDVFKHDQIG--LVEAGTGTGKTLAYLIPAVIHAVKHDQ 303 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +V+ST + LQ Q+ +K+ ++K I P + + GRG Y+C + L ++ Sbjct: 304 PVVISTETIQLQSQMLNKEWAVIKDIFPFPVHASLLKGRGHYLCLQKL----------EN 353 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI------AIDDDLWRRLSTD 190 LLA N + AK + W D D+ + + W +S+D Sbjct: 354 LLA------EDTNDHYDRAVAKAQ----LLIWILETDTGDVEEVNLASTNYRFWMDVSSD 403 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-SEAVLPDPKNLLLVLDE 249 SC C ++ + A+++ ++A+++V NH+L++ + S ++P +L +LDE Sbjct: 404 GISCTTPKCPWFTRDYYQRAKQQARDADIIVTNHSLLLTDIRLSHQIIPSYDSL--ILDE 461 Query: 250 GHHLPDVA-------RDALEMSAEITA-----PWYRLQLDLFTKLVATCMEQFRPKTIPP 297 HHL D A +D + + + A L L+ KL ++ E+++ Sbjct: 462 AHHLEDTATRQFGHQQDYISVIQLVNALANDEQQSFLSGALYKKLSSSLREKYQELQRIS 521 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQ----EAEHRFAMGELPDEVLEICQRLA 353 ++ ER N EL+E Y G+ + R + + D + Q Sbjct: 522 ESLHERWNQLFMELHE-----------YGTVGKAEKADTSRRSKVIAMDDHTWKPVQEAI 570 Query: 354 KLTE-MLRGLAELFLNDLSEKTGSHD----IVRLHRLILQMNRALGMFEAQSKLWRLASL 408 + T+ R L F L E D + L R I ++ A FE + + + L Sbjct: 571 QETDGAFRHLITSFRKLLFEIENEADEKGYLNSLERDIENLSTASQAFEDEYETFY--HL 628 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 S W EER + + + VS+ L L+ S +I+TSAT+ +SF Sbjct: 629 YHSQDEKQVIWMELEERGPRQSITIRSAPVDVSETLADQLFSSKKRVILTSATMTVKSSF 688 Query: 469 SRLQEMSGLKEKAGDRFVA-LDSPFNHCEQGKIVIPRMRVEPSID-NEEQHIAEMAAFFR 526 + E GL + D V L SPF + +Q + +P P I ++ AE A+ Sbjct: 689 DYVIERFGLTD--FDLAVKQLPSPFQYEKQVGLFVPEDM--PMIQGTSDRAYAEACAYHI 744 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYVTDL---RLMLLVQGDQ--PRYRLVELHRKRVA 581 ++ MLVLF S +++ V D+ ML+ QG Q R +L+ K Sbjct: 745 FRLSGATEGRMLVLFTSYDMLRKTYYAVRDMLDDTYMLIAQGVQTASRQKLI----KHFQ 800 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 +RS+L G SF EG+D+ GD LS + + ++ F P + PV E +K + F Sbjct: 801 QFDRSILFGTSSFWEGVDIPGDNLSAIVMVRLPFSPPNDPVFQARSEAVKEQGKNAFMHL 860 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 +LP A Q GRLIRS G V++ D+R++T YG +L + + ++ E I Sbjct: 861 ALPQAVLRFKQGFGRLIRSSTDRGAVIVLDRRMVTTRYGHFFAKSLQDVAVNRMDMDEII 920 >UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQY0_9GAMM Length = 664 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 191/686 (27%), Positives = 288/686 (41%), Gaps = 84/686 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L E + F PR PQ++M V L G+ L +EA TGVGKT +YL+P + + ++ Sbjct: 27 LAEALHGFRPREPQQRMAVAVESAL-GQAPTALLVEAATGVGKTFAYLVPAL----QARR 81 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQD 136 ++ST LQDQ++ +DLP + + + TA GR Y+C L A+ Q Sbjct: 82 KALISTGTKTLQDQLFERDLPTVCEALGYRPRTALLKGRANYLCHYRLELAAAEAGGQTQ 141 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 A +E L+ T+ L +A D LW ++++ +CL Sbjct: 142 RSA---------QRERMPVIEALRQFARTHPTGDLGQAGILAEDSPLWPQVTSTVDNCLG 192 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA---VLPDPKNLLLVLDEGH 251 C Y +C AR+ Q+A++VV NH L++A A++ E +LP+ +++DE H Sbjct: 193 GECPQYNDCFVVQARKRAQDADIVVVNHHLLLADMALKEEGFGELLPEVDA--VIVDEAH 250 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 LP++A +S A L + V EQ P+ + + Sbjct: 251 QLPEIAGAFFGVSVGSRA------LRDLARDVRREQEQAAPEMV--------------MI 290 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 E L ++ + A Q E R A ++ +E ++ L +L E LR L++ Sbjct: 291 REAAVELETVVKKLLEATQGMEPRAAW-DVVNEKGQVDPSLEELDEALRALSDALAPATE 349 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 G + R++L R G WR W ER Q L Sbjct: 350 RGPGLEQVQ--GRVLLMRERLQG--------WR------EDTPDTVAWV---ERFAQ-SL 389 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 H + + L + + TSATL F+ GL + L+SP Sbjct: 390 ILHRTPLDAARPLAQRRAARPAAWVFTSATLAVGEDFTHASRRLGLPVDVAQQ--RLESP 447 Query: 492 FNHCEQGKIVIPR--MRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 F+ Q +V P+ + S D +A R G LF S RA+Q Sbjct: 448 FDFARQACLVHPQPPLPNPNSPDYTRACVAWAWPLLRDNPG-----GGFFLFTSHRALQ- 501 Query: 550 FLDYVTDLRL-----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + LR LLVQG+QPR L+ R + L+G SF EG+D++G+ Sbjct: 502 --EAAALLRAELPDRELLVQGEQPRNDLL----ARFRESGNAWLLGAHSFWEGVDIRGEA 555 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 LS V I ++ F + PV+ + L++ R PF SLP A L Q GRLIR Sbjct: 556 LSVVIIDRLPFAAPNDPVLQARAQALEAEGRSPFMEFSLPQAVLALKQGAGRLIRDADDA 615 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVF 690 G + I D RL K YG+R L +LP F Sbjct: 616 GILAICDPRLTGKPYGRRFLASLPPF 641 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 205/721 (28%), Positives = 310/721 (42%), Gaps = 66/721 (9%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 AL + A+ E I + R Q ++ V ++ +G HL +EA TG GK+L+YL Sbjct: 240 ALVLSVLGSGGAISEAIAHYEHRPQQLELAEAVTRSF--NDGAHLLMEAGTGTGKSLAYL 297 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII---PDLKFTAAF--GRGRYVC 120 +P A AR + + +ST + LQ+Q++ KD+P L+ + P AA GR Y+C Sbjct: 298 VPAFAWARANGEKVAISTHTITLQEQLWEKDIPFLQSALAGTPLEGVEAALVKGRSNYIC 357 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 R A D L +P + R A + +T G R +++ + Sbjct: 358 LRKWEEAA----VGADFLT------SPEERRFLIRLAAWLAETET----GDRSELNLSGE 403 Query: 181 DD-LWRRLSTDKASCLNRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAMES-EAVL 237 ++ WR + ++ +CL C ++R C F ARR ++A+V+V NHAL+ A + + VL Sbjct: 404 EERFWRTVQSETETCLGPKCKWFRSHCFAFRARRRARDAQVLVLNHALLFADIAAGNQVL 463 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEM---SAEITAPWYRLQLDLFTKLVATCMEQF-RPK 293 P ++L ++DE HHL VA L + S +IT L L+ + R + Sbjct: 464 PPFRHL--IIDEAHHLEAVATQNLGVNLESWDITGALLLLYRAPGQGLLPQLRRRLGRGE 521 Query: 294 TIP---PLAIPER--------LNAHC----EELYELIASLNNILNLYMPAGQEAEHRFAM 338 IP P+ +P L HC +EL+ L A L G R Sbjct: 522 AIPARPPVGLPSEDLIDKLVGLVQHCRAATDELFRLCADLVEARGRSEEEGGARALRLTD 581 Query: 339 GELPDEVLE-ICQRLAKLTEMLRGLAELFLNDLSEKTGSHD-IVRLHRLILQMNRALGMF 396 + E + Q A LR LA + L++ + + G+ Sbjct: 582 AVRTGPLWEALEQARANAVHRLRTLAAGLALLAEALELQDPPLADADALLVDIQKQNGIL 641 Query: 397 EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 +K L + G W +R +L + I V D L L+ + +I Sbjct: 642 IQSTKAIDRVLLEPAEGE--VTWIESAQRGDRLRVALRAAPINVGDILRADLFGRMRSVI 699 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 +TSATL SF+ L+E GL DR L SPF + EQ +++P P + Sbjct: 700 MTSATLTVGESFAHLKERLGLSRLPPDRLREGVLSSPFAYREQALLLVPEDLPNPKEGDF 759 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-----LRLMLLVQGDQPR 569 Q + F Q + LVLF S R +++ + D L+L D R Sbjct: 760 TQAAVDFLRRFLIQAGGRT----LVLFTSHRQLRQVYQALKDDLEAEGLLLLGQGLDGSR 815 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 RLV R GER+VL G SF EG+D+ G+ LS V + ++ F P D PV+ E Sbjct: 816 SRLVAEFRA----GERTVLFGSASFWEGVDIPGEGLSAVVMVRLPFNPPDDPVMEARIED 871 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN--YGKRLLDAL 687 L+ F SLP A Q GRLIR+ G G V++ D RL + YG + L +L Sbjct: 872 LERRGLSSFAHLSLPQAVIRFKQGFGRLIRTRGDRGVVIVLDNRLSPRGSRYGLQFLRSL 931 Query: 688 P 688 P Sbjct: 932 P 932 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 186/700 (26%), Positives = 299/700 (42%), Gaps = 85/700 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q QM+ V +L G G HL +EA TGVGK+L+YL P + A E + +VVST Sbjct: 288 REQQLQMLRAVGDSLMG--GVHLVVEAGTGVGKSLAYLTPAVYFAVENGERVVVSTNTKN 345 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNL-----TALASTEPTQQDLLAF 140 LQ+Q++ KD+P L++++ D+ F+ A GRG Y+C L+S+E +Q +A Sbjct: 346 LQEQLFLKDVPFLERVL-DIDFSVALLKGRGNYICQARWRQVLEKGLSSSERSQLLPVAL 404 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + E + E + Y + +W R+S D CL + C Sbjct: 405 WEQETRSGDISENAAFRQ-------YGY--------------VWNRISADGGPCLGQKCP 443 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 C AR+ Q A +V+ NH+L+ + E++ + + L+ DE H++ VA + Sbjct: 444 MRETCYLLKARKASQAAHLVIVNHSLLFSDTEADNRILGEYS-YLICDEAHNMEQVATEH 502 Query: 261 LEMSAEITAPW-YRLQLDLFTKL----VATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 L + + W R LD + E + A+ E A E L + Sbjct: 503 LGKRSNV---WRARAMLDNLYRNEGGPSGDLGEVMGALSGTDGALLESATAGVERLASDV 559 Query: 316 ASLNNILNLYMPA----------GQEAEH---RFAMGELPDEVL---EICQRLAKLTEML 359 + + + + A G+E E R+ E P L E+ LA L+ + Sbjct: 560 TAASAAVETFFTALAARHIDLNDGREVEFGKLRYRQ-EAPVSALLEEELAGVLAALSTVA 618 Query: 360 RG---LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 RG +A+L + ++ S + L R + F A L +A+++ Sbjct: 619 RGAESVADLITDSELDRAESF----VQNLTFHAAR-VREFAAD-----LEYVAEAADPGS 668 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W + V++ + L+ + +I TSAT+ SF + E G Sbjct: 669 VFWLDVRTFRDVFECELRSAPVSVAEMMGDFLYSRVDSLIATSATMTVDGSFDFVMERMG 728 Query: 477 LKEKAGDRFVALD--SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 L + + LD SP+++ Q V+ +PS Q ++ + ++ + Sbjct: 729 LDLIPDWKVLTLDVGSPYDYDAQSIAVVAGYLPQPSSSGFNQTVSRLVV----KLAERAQ 784 Query: 535 LGMLVLFASGRAM----QRFLDYVTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLV 589 G LVLF + A+ + LD +T ++L QG L+E + V SVL+ Sbjct: 785 GGTLVLFTARSALDAVFKSVLDPLTSRGKLVLAQGHGGASSALLEQFAREV----DSVLL 840 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 SF EG+D+ G L Q+ I K+ FP PVV E ++ F +P + Sbjct: 841 ATSSFWEGVDVPGRSLEQLVIVKLPFPVPRDPVVEAHCERYEADGENSFGRYMIPRTAIR 900 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 L Q GRLIRS G V+ D RL T+ YG+RLL+ LP Sbjct: 901 LRQGFGRLIRSTTDSGAVIFLDSRLSTRAYGERLLEQLPT 940 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 182/697 (26%), Positives = 310/697 (44%), Gaps = 63/697 (9%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F R Q+QM+ +V A EE H IEA TG GKTL+YL+P A ++K +V+ST Sbjct: 260 FEDRPGQKQMMKEVYA--AFEEHAHALIEAGTGTGKTLAYLVPSAYFAYSKKKPVVLSTY 317 Query: 85 NVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 + LQ+Q+ +DL LL I+P TA GR Y+ R +Q L +D Sbjct: 318 TIPLQEQLLQRDLRLLASIVPFPLRTAVLKGRSHYLDLRKF---------EQALQQLEND 368 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 + Q L+ D + + + W + +D S L + ++ Sbjct: 369 SYDVCLTKAQLLVWLLETD-----YGDVEELNLTTGGRSFWPMVQSDPESDLGKYNPWFS 423 Query: 204 ECPFFVARREIQEAEVVVANHALVMA-AMESEAVLPDPKNLLLVLDEGHHLPDVARDALE 262 C + +RR+ ++A++++ NHAL++ +++ +VLP + V+DE HH + A Sbjct: 424 RCFYHRSRRQAKKADLIITNHALLLTDVVQTHSVLPSYSHA--VIDEAHHFQEAASAYFG 481 Query: 263 MSAEITAPWYRLQL---DLFTKLVATCMEQFRPKTIPPLAIPE------RLNAHCEELYE 313 ++A + + +Q D +E + PLA+ + R +EL+ Sbjct: 482 LTASFLSVSFAIQRIGDDHHEYGAIARLETLGEQMKQPLALDDAKEGLVRFREDTDELFR 541 Query: 314 LI------------ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRG 361 +I + I +Y +E G L +LE RL E + Sbjct: 542 MIHVFALDAQESNATDVGRISYVYKSFSEE-------GMLWQAILECAMRLQLHGEQVLA 594 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWAT 421 + + EK + R L+ A+ FE +L L W Sbjct: 595 ALKAAYQVVEEKVEAEYESR--SLLADTQGAIAAFEETVQLLYELLLEYDDN--YVYWIE 650 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA 481 E + + + + I VS++L + +++TSATL SF + GL + Sbjct: 651 VEPKGAKNATYLYAKPIEVSERLADQFFAKKKSVVLTSATLTVNQSFDYQIDRLGLVD-F 709 Query: 482 GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 G + ++SPF++ +Q K++IP + ++E ++A + E + LVLF Sbjct: 710 GVKTKQIESPFSYAQQAKLLIPYDIPDVRGPDDELFAQDIAIKIWRITEVMQRKA-LVLF 768 Query: 542 ASGRAMQRFLDYVTDL----RLMLLVQG--DQPRYRLVELHRKRVANGERSVLVGLQSFA 595 S +++ YV DL +L L+ QG R RL++L ++ +R+VL G SF Sbjct: 769 TSYDMLKKVFYYVKDLNDEGKLALIGQGVTSGSRMRLLKLFKQ---AEQRAVLFGTNSFW 825 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+DL G+ L + I ++ F P + P+ + E K+ + PF +LP A Q G Sbjct: 826 EGIDLPGNELECLIIVRLPFAPPNLPLNRAQMERAKAEGKNPFTDLALPQAVIRFKQGFG 885 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 RLIR+ G G + ++D+R++T YG+ +D+LP P+ Sbjct: 886 RLIRTKGDRGLIFVFDRRIVTTRYGRTFIDSLPDVPV 922 >UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G59_THICR Length = 636 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 190/683 (27%), Positives = 290/683 (42%), Gaps = 87/683 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + D+ R Q +M VA+ + +E + L EA TG GKT +YLIP + K Sbjct: 17 LSQNTSDYEVRHAQVEMAETVAEVI--DEDQTLLAEAGTGTGKTFAYLIPALLSG----K 70 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQ 135 ++VSTA LQDQ+ KD+PLL I + K TA +GR Y+CP+ L + E + Sbjct: 71 KVIVSTATKTLQDQLLRKDIPLLMDIC-NAKGTAKILKGRENYICPQRLEIAETAEQNTK 129 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 ++ L L + QE+ L GD + T + +D +W R+ C Sbjct: 130 EVWRKLS--LIHDWQEK-----TLIGDKS--------ELTTLDENDPIWSRVCARMEFCQ 174 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA---VLPDPKNLLLVLDEG 250 C C + +++ +AE+++ NH L A A+ + +LP+ + + DE Sbjct: 175 ANECTGDNGCFYPGVKQQATDAEILIVNHHLFCADLALREQGFGEILPEAD--IYIFDEA 232 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H LPD+A L S R QLD + V ++ P+TI E Sbjct: 233 HQLPDIAAQFLGFSVS------RFQLDELVRDVRLAYKKESPETI--------------E 272 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L + ++ + + ++ A + E R+ E E + L L L LAE+ Sbjct: 273 LSDQAKAVEDKIRIFNEALGKWEKRWTW-ESFSEAKTGHKTLEHLRNQLSLLAEVI---- 327 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 I +L+ + + FE Q + W AS +W + +L+ Sbjct: 328 ------KPITDRGKLLSALYKRTQEFEKQIETWLKASSENQ-----IRWVESSQARFKLN 376 Query: 431 LWFHCVGIRVSDQLERL--LWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL 488 L V S Q + L W I TSATL SF GL+ R Sbjct: 377 LTPLSVAAPFSRQRDALGGAW------IFTSATLSVNQSFDYFAHRLGLESA---RTHQW 427 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 +SPF++ +Q I P +P + + A + + L LF S +A+Q Sbjct: 428 ESPFDYEQQAVIYHPIGLPDPKHPDYIKICLRAAWPLLLASQGRAFL----LFTSHKALQ 483 Query: 549 RFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 ++ L+VQGD P+ L+ R E ++L+G SF EG+D+KGD L Sbjct: 484 EAKVILSQHWEGTLMVQGDGPKTTLL----ARFKETENAILLGTSSFWEGVDVKGDALKL 539 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 V I +I F P D PVV +LK F +P A+ L Q GRLIR G + Sbjct: 540 VLIDRIPFIPPDDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGAGRLIRDSSDKGVL 599 Query: 668 VIYDKRLLTKNYGKRLLDALPVF 690 ++ D RL K YGK + ++ P F Sbjct: 600 MLCDPRLTQKPYGKIITNSFPSF 622 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 197/699 (28%), Positives = 305/699 (43%), Gaps = 72/699 (10%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L DF R PQ Q+ V + L EE L +EA TG GK+ +YL+P A + + Sbjct: 246 LTRHFADFEYRRPQMQVALAVGRAL--EEQTVLTVEAGTGTGKSFAYLVPAALWALDGGR 303 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +VVST V LQDQ+ KDLPLL + + LK GRG Y+C R A + + Sbjct: 304 RVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRRWGAAVNEQ----- 358 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI---DDDLWRRLSTDKAS 193 +FL DE A++ L K D ++++ + W ++ Sbjct: 359 --SFLPDE--------GFLYARIAVWLARTKTG---DRAELSLRPEEKGFWDGVAAGDWG 405 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 C + C + C ARR ++A +V+ NH+L+++ ++ E L P LVLDE HHL Sbjct: 406 CAHAYCRFNSVCFLQRARRAAEQAHLVITNHSLLLSDLKMENRLL-PAYDALVLDEAHHL 464 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 VA + ++ ++ ++ +L E + L E L A + Sbjct: 465 EGVATE--QLGTTVSRGALERWVEGLNRLTGRIGEFYPDNRDEFLRDGEALLAAVRRFFA 522 Query: 314 LIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS-- 371 L+ + + +P E FA L L+ C A L G + ++ LS Sbjct: 523 LLGA--RLRRRELP-----EEDFAAERLGPRALDACPETAGSYLELAGSLKAYVQRLSRA 575 Query: 372 -EKTGSHDIVRLH---RLILQMNRALGMFEAQSKLWRLAS----LAQSSGAPVTKW---A 420 E+ + + R+ L+ A+G RLAS + +++ W Sbjct: 576 VERLTDSTVPAVQEELRVGLEQELAVGK--------RLASDLEFVYEAADPGYVFWLEGG 627 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 R+ EG L + V + L +RS +I+TSATL +SFS E GL+ Sbjct: 628 GRQTAEGVLR----AAPVHVGELLHDGFFRSGKPVILTSATLTVQSSFSFFDERVGLEHL 683 Query: 481 AGDRFVAL--DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 D +L SPF + EQ + + +P D + ++ ++ + V + L Sbjct: 684 PRDLRGSLIVGSPFAYAEQALLYVVTDLPDPG-DGDGAYLDAVSDALGRIVGVTRGR-TL 741 Query: 539 VLFASGRAMQ----RFLDYVTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQS 593 LF + +A++ R + L LL G D R RL++ R N ++VL G S Sbjct: 742 ALFTAHKALRTAYRRLKPVLEKQGLELLGHGLDGGRARLLQYFR----NTPQAVLFGASS 797 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D+ GD LS + I K+ F P + PV+ E ++ R F LP A L Q Sbjct: 798 FWEGVDVPGDALSCLVIVKLPFEPPNRPVLQARREEVRRRGRSDFNDLCLPQAVLRLKQG 857 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 GRLIR+ G V+I D RL+ K YG L++LP P+ Sbjct: 858 FGRLIRTTADRGVVIILDNRLVRKRYGALFLESLPAAPM 896 >UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVG8_DICNV Length = 645 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 196/717 (27%), Positives = 300/717 (41%), Gaps = 135/717 (18%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRH--LAIEAPTGVG 59 AL++ALK Y+ +EQ+ +A+T+A + R L EA TG+G Sbjct: 13 ALSSALKG-----YQVRKEQV--------------HLAETIARQIERKSVLCAEAGTGIG 53 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRY 118 KT +YL P + A K ++STA LQ+QI+ D+P ++KI+ + + A GR Y Sbjct: 54 KTFAYLFPLLLSA----KKALISTATKTLQEQIFYHDIPFVQKILGNSRKIALLKGRRNY 109 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C LA P N QE++ R +L D DG DI Sbjct: 110 LCYERYEHLAHKPPQ--------------NAQEQKYR--QLIDDFAVRSKDGDLAQLDIP 153 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA- 235 + D+ R +S CLN +C ++ +C AR++ ++A+++V NH L++A ++++ Sbjct: 154 ENHDILRAVSCTAEQCLNADCPFFAQCFVQKARQKAKDADLIVVNHYLLLADLVLKNDGF 213 Query: 236 --VLPDPKNLLLVLDEGHHLPDVAR--DALEMSAEITAPWYR-------------LQLDL 278 +LP+ + ++DE HHLP + R + +S W + L L Sbjct: 214 AEILPEIET--FIIDEAHHLPTITRHFSGITLSQRQCHLWLKEFDEAVIEHAPDALTLRH 271 Query: 279 FTKLVATCMEQFRPKTIP-----PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE 333 K M+QF P ++ L +P+ L AH + +E+IA+ L + A Q Sbjct: 272 AIKTAQNVMQQF-PSSLQIYDERILEMPD-LQAH-HDFWEIIAAWQQALMKLLSALQPQL 328 Query: 334 HRFAMGELPDEVLEICQRLAKLTEMLRGLAE-LFLNDLSEKTGSHDIVRLHRLILQMNRA 392 R A VL +R +L L L E L L D +E Sbjct: 329 PRAA-------VLHTFER--RLETALNSLDEFLALKDANES------------------- 360 Query: 393 LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSI 452 S P KW E Q HL + V + + Q + RS Sbjct: 361 ------------------SPETPEAKWV---EVRAQ-HLVLNRVPVNAALQFGTWIERSD 398 Query: 453 PHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSID 512 SATL SF+ GL + A SPF++ +Q + P P+ Sbjct: 399 AAWCFLSATLTINQSFTHFCHELGLNASVETLYCA--SPFDYPKQALMYQPPQLPNPNHP 456 Query: 513 N-EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYR 571 E IA + R+ +LF S RA++ + + L VQG P+ + Sbjct: 457 QYTESFIAAVLPILRRSQGRS-----FLLFTSYRALKIAEKLLANEEFALFVQGSAPKTK 511 Query: 572 LVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 L+ ++L+ SF EG+D++G L V I K+ F D PV L+ Sbjct: 512 LL----ADFCQTPNALLLATASFWEGVDVRGKQLVCVMIDKLPFAAPDDPVSRERHRLLE 567 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 PF +LP A +L Q VGRLIR +G +VI D RL K+YGK L++LP Sbjct: 568 EQGLSPFMYDTLPQAVISLKQGVGRLIRDQKDYGVLVIGDPRLRQKSYGKIFLESLP 624 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 190/706 (26%), Positives = 305/706 (43%), Gaps = 98/706 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ V + L E +H IEA TG+GK+L+YLIP A E+QK +V+ST + Sbjct: 257 RDGQWEMMKLVYEAL--ETSQHALIEAGTGIGKSLAYLIPSAFFAYEQQKRVVISTHTLQ 314 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 LQ Q+ +D+P LK+++P L+ G+ Y+ A D++ L Sbjct: 315 LQQQLLERDIPFLKEVVPFPLRVAVLKGKRNYLSLDKFIAFLQEHHQNYDVVLLKCQLLV 374 Query: 147 PNNQEEQKRCAKLKGDLDTYKWD-GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYREC 205 Q E GD+D G R W L D+ + +++R Sbjct: 375 WLTQTE-------TGDMDELNASSGARL---------FWPLLVMDEEDNGGKYNFFWR-- 416 Query: 206 PFFVARREIQEAEVVVANHALVMA-AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMS 264 A++ +EA +V+ NHA ++ S +LPD +++ ++DE HHL +VA Sbjct: 417 ----AKQRAEEAHIVITNHAFLLHDVTASTPLLPDYEHM--IMDEAHHLEEVASHYFGQQ 470 Query: 265 AEITAPWYRLQLDLFTKL-----VATCMEQFRPK-------TIPPLAIPERLNAHCEELY 312 + + RL L K+ +A M+ F + + E L C+EL+ Sbjct: 471 VDYVS--IRLILTRIGKVNENGSLAKLMKLFAGRHWNADDHFFRCGQLVEELQFECDELF 528 Query: 313 ELI---------ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 +I A + P + AM EL + I +A L + + L Sbjct: 529 RMIRRYALERKSAESGRCRYRFEPQKESGRQWSAMKEL---LWRIRGHVANLVDETKQLQ 585 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 F + E + S + +N+ + L L +S V +W E Sbjct: 586 TFFSENNMESSISAQPYSYFSDVSSLNQIIDT---------LYDLIESDDPMVVRWIEAE 636 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 E+ + I++ + L+ I++TSATL SF+ + GL + Sbjct: 637 EKGAANATAVYSQPIQLDEFFAERLFMPKKSIVLTSATLTMNGSFAYIISRFGLSD---- 692 Query: 484 RFV----ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH---IAEMAAFFRKQVESKKHLG 536 F + SPF++ EQ ++IP S + E++ +AE A K+++ K Sbjct: 693 -FYPICQTIPSPFSYKEQAMLMIPSDFPPISSVSLEEYAAVVAEGVAQIAKRIKGK---- 747 Query: 537 MLVLFAS-------GRAM---QRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 MLVLF S AM +R DYV L+ QG Q +L K +++ Sbjct: 748 MLVLFTSYELLKLTANAMKMEERNEDYV------LIAQGVQSG-SATKL-TKAFQQFDQA 799 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 +L G +F EG+DL GD LS V I ++ F P D PV+ + E++++ PF SLP A Sbjct: 800 ILFGTSNFWEGVDLPGDELSVVVIVRLPFAPPDDPVIEAKSEYIRAKGGNPFYELSLPEA 859 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 Q GRLIR+ G + ++D+RL + +YGK L++LP I Sbjct: 860 VLRFKQGFGRLIRTKKDKGAIFVFDRRLTSASYGKYFLNSLPSLTI 905 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 183/732 (25%), Positives = 311/732 (42%), Gaps = 100/732 (13%) Query: 10 QIAAWY----KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 +I +W KAL E +P + R Q M+ +VA A E H IEAP G+GKT+ YL Sbjct: 238 EIESWEAGNEKALSELMPGYEKRDGQMMMMREVADAFANRE--HALIEAPPGIGKTIGYL 295 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRN 123 IP A++ +K +++ST + LQ QI +KDLP+++ + P TAA G+ Y+C Sbjct: 296 IPAALFAKKSKKPVIISTYSTLLQQQILTKDLPIVQDLFP-FPVTAAILKGQSHYLCLYK 354 Query: 124 LTALASTEP-------TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 + E T+ LL +L + T + E G L WD L Sbjct: 355 FEQVLHEEDDNYDAVLTKAQLLVWLTETNTGDVAELNLPSG---GKL---LWDRL----- 403 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 A DDD ++R ++ +Y R A++ +++V+ NH+L++ E Sbjct: 404 -AYDDDSYKRSRSEHVIG-----FYER------AKQIAMRSDLVITNHSLLLTD-EGSHK 450 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKL--VATCMEQ----- 289 P++ ++DE HH A + L A ++L TKL + T EQ Sbjct: 451 KRLPESGTFIIDEAHHFERAASEHLGKRATY--------IELHTKLSRIGTLKEQGLLKK 502 Query: 290 ----FRPKTIPPLAIPE------RLNAHCEELYELIASL-------NNILNLYMPAGQEA 332 F+ ++P + E + A + + + S ++ L +E+ Sbjct: 503 MRQLFQRNSLPVDSFFELEEWLQHVQAESDAFFSSVHSFVKRRKPKEDLNRLVFKVNKES 562 Query: 333 EHRFAMGELPDEVLEICQRLAKLTEMLRG---LAELFLNDLSEKTGSHDIVRLHRLILQM 389 + + + L D +C L L ++ L E L + KT + L Sbjct: 563 QDK-SWSILTDGAERLCSMLTHLQQLFEAQSSLMEKHLKGMKSKT----------VFLAD 611 Query: 390 NRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 M Q L L S W + + + + + + + L + Sbjct: 612 EYQRSMKGLQHYCQTLQKLFFGSDDDEAVWIEIDAKGAKNAVAIYAQPLEPGELLADQFF 671 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 +++TSATL SF + E GL + R + ++SPF++ E+ +++IP+ ++ Sbjct: 672 ARKNSVVLTSATLTVEGSFQFMIERLGLSD-FFPRTMRIESPFSYDERMQVMIPK-EMKS 729 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS----GRAMQRFLDYVTDLRLMLLVQG 565 D + + A + + + +K +LVLF S + Q ++ + LL QG Sbjct: 730 IQDTGQPEFIQDTARYIELMAKEKQPKILVLFTSHDMLKKVHQELKHNMSASGIQLLAQG 789 Query: 566 ---DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 P + K +++L+G F EG+D GD L+ V I ++ F D P+ Sbjct: 790 ITGGSPGKLM-----KTFKTSNQAILLGTNHFWEGVDFPGDELTTVMIVRLPFRSPDHPL 844 Query: 623 VITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR 682 + E + + PF+ SLP A Q +GRL+RS G G ++I D+R+ T YG+ Sbjct: 845 HAAKCELARKKGKNPFQTVSLPEAVLTFRQGIGRLLRSAGDKGTIIILDRRIKTAGYGRL 904 Query: 683 LLDALPVFPIEQ 694 LDALP + + Sbjct: 905 FLDALPTTSVSE 916 >UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B4ST01_STRM5 Length = 681 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 193/687 (28%), Positives = 296/687 (43%), Gaps = 79/687 (11%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 AL + F+PR Q ++ +A L ++ L EA TG GKT +YL+P + Sbjct: 17 ALASHLDAFVPRPAQLRLTEAIADAL--QQRDLLLAEAGTGTGKTFAYLVP---VLLSGL 71 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 +T ++ST ALQDQ+Y +DLP +++ + L+ GR Y+C L A EP Sbjct: 72 RT-IISTGTRALQDQLYHRDLPRVRQALGVGLRSALLKGRANYLCRYRLQQ-ARGEPRFS 129 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDL---DTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 +P + +R G D + DGL D D L +++ Sbjct: 130 ----------SPEQAAQFQRILAWSGRSEFGDIAELDGLAD------DSPLLPMVTSTVD 173 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-----VLPDPKNLLLVL 247 +CL +C ++ +C AR+ Q A+VVV NH L++A + + +LP + V+ Sbjct: 174 NCLGTDCPFWDDCFVVRARQRAQAADVVVVNHHLLLADLALKQDGFGELLPGAQAF--VI 231 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H LP++A + PW L D C+ + R A+ E ++ Sbjct: 232 DEAHQLPELAAQFFGEGFGMR-PWQELGRD--------CLAEARGVGGAQSALQEPVDQL 282 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 + L L +++ +P+ AM ++ D + L L E L Sbjct: 283 QQALLALRSAMEG-----LPSRGTQWRALAMPQVRDGFDTVMAGLVML--------EQAL 329 Query: 368 NDLSEKTGSHDI--VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 L E D R + +++R LG + + L ++++ A W R Sbjct: 330 QPLREAAAGLDACHARAREAVSRLSRWLG--DDEPTLDFDTDPSEANSAADVLWYELTPR 387 Query: 426 EGQLHLWFHC--VGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 F C + VS L RS I TSATL F + GL + Sbjct: 388 G------FRCQRTPMDVSGPLREHRERSRAAWIFTSATLTVGGGFDHIATRLGLDDP--- 438 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + SPFN EQ +P +P+ + + R +++ + L LFAS Sbjct: 439 HTLVQPSPFNWPEQALCYMPEGLPDPAARGFGTALIQS---LRPVLQASQGRAFL-LFAS 494 Query: 544 GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 RA++ + + D L VQG+ PR L++ R+ NG VL+G SF EG+D+ G+ Sbjct: 495 HRALREAAEALRDGPWPLFVQGEAPRATLLQRFRES-GNG---VLLGSASFREGVDVVGE 550 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I K+ F D PV E ++S PF + LP A L Q VGRLIRS Sbjct: 551 ALSVVMIDKLPFAAPDDPVYEARLEAIRSQGGNPFRDEQLPQAVIALKQGVGRLIRSESD 610 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVF 690 G +V+ D RLL + YG+ LD+LP F Sbjct: 611 RGVLVLCDPRLLNRGYGRVFLDSLPPF 637 >UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS05_9BACT Length = 652 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 189/690 (27%), Positives = 300/690 (43%), Gaps = 83/690 (12%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F R Q ++ V L G GR LA EAP GVGKT + L P + A+ T++V T+ Sbjct: 18 FEYRPQQERLSQAVLGLLEGNSGRILAAEAPPGVGKTFALLAPAVTWAKTTGNTVLVLTS 77 Query: 85 NVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 ++ LQ+Q+ +KDLP L +++ D+ F GR Y C R + L + LL+F Sbjct: 78 SITLQEQLINKDLPTLSEVLGLDVPFGLLKGRSNYACMRKASELG-----DEGLLSF--- 129 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA-----IDDDLWRRLSTDKASCLNRN 198 N++ E +W L + D++ R+S CL Sbjct: 130 ----NDKGEASGV--------ILEWLALTEEGDLSEVPLPPGHPAVERISGSFRGCLGAR 177 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMA-AMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C Y C A R VVVAN+ L + A+ P P L+L DE H +P+ A Sbjct: 178 CPYRDRCFVQRALRNASRWTVVVANYHLYFSYALGRGGAFPVPARLVLC-DEAHRMPEAA 236 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 +S + W R ++ + + + KT+ ++ + + S Sbjct: 237 SSVSAVSTRMDD-WIR----HLRRVPSPGLNELGAKTV---------GYDQQKTLDDVKS 282 Query: 318 LNNILNLYMPAGQEAEHRFAM-----GELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 LN + L+ + + + EL E L++ A + R + +L+DL Sbjct: 283 LNRAVRLFFERLDSSGIKNGLFIEPPEELVREGLDVLDLAAPVIATGRRFSS-YLDDLGP 341 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 ++ R L + L Q+ W L S T W + +G L Sbjct: 342 S--GEEMARDGAEYLAWVQVLDEM-GQAFRW---CLDVSDYPDWTYW----KEDGAL--- 388 Query: 433 FHCVGIRVSDQLERLLWRSIP-HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 + D L R P +++ SAT+ F +GL+ D + LDSP Sbjct: 389 -SSAPSKCGDILPRAFGGDDPPYMVAVSATMAVDGRFDYWSRETGLEP---DEALLLDSP 444 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F EQ ++++ + + + +E++ + RK + LVL +S R ++R Sbjct: 445 FPLSEQMELLVVDLGIAVT---DEKYDDRVCRVVRKLCKENGG-ASLVLLSSTRLLKRVG 500 Query: 552 DYV---TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 Y+ + +L+QGD P+ L+ +R E SVLVG SF EG+D+ GD L+QV Sbjct: 501 GYLRRCSGDGYNVLIQGDLPKVELL----RRFREDESSVLVGTVSFREGVDVPGDSLTQV 556 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I +I FP D P+ + L+ + + V LP+A +L Q VGRLIRS+G G V Sbjct: 557 IIDRIPFPHPDDPIQRARRD-LEGPSSFVKSV--LPNAKMHLRQAVGRLIRSYGDRGRVA 613 Query: 669 IYDKRLLT-KNYGKRLLDALPVFPIEQPEV 697 + D RLL+ +N+ R+LD+LP PI + V Sbjct: 614 VLDGRLLSRRNW--RVLDSLPDVPIRKIRV 641 >UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA Length = 661 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 166/670 (24%), Positives = 290/670 (43%), Gaps = 63/670 (9%) Query: 31 QRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQD 90 + QM A A + G + IEA TGVGK+L+YLIP + E + T+VVST +LQD Sbjct: 22 KEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSALFSLENECTVVVSTETKSLQD 81 Query: 91 QIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL---ASTEPTQQDLLAFLDDELT 146 Q+ KD+PL+ + + + A G Y+C R + P + L + Sbjct: 82 QLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVMERGDFGPEMESSLPYF----- 136 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 N E+Q G+R D + + W ++ + +CL RNC + Sbjct: 137 -VNWEKQTES-------------GIRAEYDGFLSNSFWSSVARESDNCLGRNCPNFSSSY 182 Query: 207 FFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE 266 +F+ + + ++A +++ NH L+ + + + L P + LV+DE H P++ A +E Sbjct: 183 YFLEKDKWKKANILIVNHHLLASHLAGDFKLLPPFS-QLVIDEAHVFPEIVGKAF--GSE 239 Query: 267 ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH-CEELYELIASLNNILNLY 325 I Y L+L L + P+ L + + N +++ I+ N++ + Sbjct: 240 IR---YEFILNLLHYL-------YFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRML 289 Query: 326 MPA-----GQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 + A Q + +L + LE LA L+ L GL LS+ D + Sbjct: 290 LSAIPLQFNQFSSRHTERIKLDNGALE--DTLADLSSTLEGL-------LSKYKKDSDDM 340 Query: 381 RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRV 440 L L + G + S L + + W + + ++ + Sbjct: 341 EEKELALGLEMVAGNLKKVSSF--LTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKN 398 Query: 441 SDQ-LERLLWRSIPHIIVTSATLR-SLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 +D+ L L+ ++ +++TSATL + +F + G E + L+SPF + Sbjct: 399 TDEILANTLFPNMDSVVLTSATLSPTAGNFQYFLKEVGTSEV---KTKTLNSPFQYQTHS 455 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR 558 + +P+ +P D + I +++ ++ VLF S + + + + +L Sbjct: 456 LLFVPKQIADPVSDPKRNKID--LSYWITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLV 513 Query: 559 LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPI 618 + Q + R+ +AN + SVL G+ SF +G+D+KGD L V + K+ F Sbjct: 514 PYPIFA--QTEMGPIAAKREFLAN-KNSVLFGVSSFWQGVDIKGDKLRNVIVTKLPFQVP 570 Query: 619 DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 PV+ + E ++ + PF +P L Q GRLIRS G V I D R+ TK+ Sbjct: 571 TEPVLQAKMEDMEKKGKSPFWEMQVPKTCLLLRQGFGRLIRSQSDTGMVSILDPRIHTKS 630 Query: 679 YGKRLLDALP 688 YGK +L +LP Sbjct: 631 YGKNVLQSLP 640 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 178/707 (25%), Positives = 312/707 (44%), Gaps = 69/707 (9%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L+ PD+ R Q M+ V ++ E H +EA TG GKTL YL+P I AR+E Sbjct: 250 LKNAFPDYELRPGQLAMMDAVYQSFLNNE--HTLVEAGTGTGKTLGYLLPAIIFARQEGA 307 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 +++ST V LQ+Q+ SKDLPLL+K++ A +GR ++ +LA E + + Sbjct: 308 RVLISTYTVQLQEQLLSKDLPLLEKLL-GFPANAVLLKGR----KHYLSLARFEQSLNEA 362 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 D LT Q GD+D L + A+ W ++ + ++ Sbjct: 363 DDNYDTTLT-KMQILVWLTETATGDVDE-----LNLSSGGAV---FWNKIQNGDSKFISE 413 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 + + R+ + AR+ + A++++ NHA+++ ++ E + P V+DEGH A Sbjct: 414 SGWKSRDF-YNRARKSAENADLIITNHAMLLNSLSGENQIF-PSYDYAVIDEGHQFSKAA 471 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN--AHCEELYELI 315 S + + L+L L K+ +Q K L ++ AH EL L+ Sbjct: 472 GKHFGFSID----YLSLRL-LLGKIGLYDQKQLLYKLERLLEGRAAMDGAAHPFELNRLV 526 Query: 316 ASLN-------NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLN 368 A L ++ +Y +A ++A ++ + +I R K E + Sbjct: 527 ADLQYEMDEFFKLVGIYGKRKLKA-RKYASSKISFRLTDITPRDFKAVEASAERFSFLVL 585 Query: 369 DLSEKTGSHDIVRL------------HRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 DL + D ++L L+ +++ +G + R A + V Sbjct: 586 DLI--SALEDRLQLLVPLTGELAPGDQALLEEISACIGELRDVRESIRKTIFAGQTACAV 643 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W + R Q + I V+ L + ++TSATL SF + + G Sbjct: 644 --WVELDGRAMQNATTVYSQPITVAGNLRDGFFNQKKSAVITSATLSVGQSFDYIMDELG 701 Query: 477 LKEKAGDRFVA----LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 L DRF ++SPF++ Q ++ +P E + E++++ + E+ Sbjct: 702 L-----DRFSCQTELIESPFDYASQVRLAVPSDLPEINSVPLEEYVSAITEHIISLAEAA 756 Query: 533 KHLGMLVLFASGRAMQRFLDYVTDLRLM----LLVQG--DQPRYRLVELHRKRVANGERS 586 ML+LF S ++R + V + + L+ QG R RL + ++S Sbjct: 757 NGR-MLILFTSHDMLRRTYELVKESGFLEEYVLIAQGITSGSRTRLT----RNFQRFDKS 811 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 +L G SF EG+D+ G+ LS + + ++ F P D P+ E ++S PF +LP A Sbjct: 812 ILFGTSSFWEGVDIPGEDLSCLVMVRLPFSPPDEPLGEARKEAIQSRGGRPFSEHALPEA 871 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 Q VGRLIR+ G ++++D+R++T +YG+ LD++P P++ Sbjct: 872 VLRFKQGVGRLIRTKNDRGIIIVFDRRIVTASYGRAFLDSIPSIPVK 918 >UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYH8_HALNC Length = 668 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 187/681 (27%), Positives = 286/681 (41%), Gaps = 97/681 (14%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 + PRA Q QM + + + R + IEA TGVGKT YL P + R+ +VST Sbjct: 38 YQPRAGQLQMAEIIRDAIT--DSRTVVIEAGTGVGKTFGYLAPILLAGRKA----IVSTG 91 Query: 85 NVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLT-ALASTEPTQQDLLAFLD 142 LQDQI+S+DLP +K+++ TA GR Y+C L A+ D + L Sbjct: 92 TKHLQDQIFSRDLPQIKQLMGSTTRTALLKGRSNYLCLHRLERAMTEGRLKSPDWVTALH 151 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYY 202 T + R D D + D + + I W +++ +CL + C + Sbjct: 152 ---TIKGWSTRTR------DGDIARCDAVSEEHGI------WPLVTSTNENCLGKECPVF 196 Query: 203 RECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLLVLDEGHHLPDVARD 259 EC AR EA++VV NH L A + +S P+ ++VLDE H LP++A Sbjct: 197 DECFVVKAREAAHEADLVVINHHLFCADIAIRQSGFAQLLPEADVVVLDEAHQLPEIA-- 254 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 +L + +++ +DL +V EQ A ++ +L+ ++ Sbjct: 255 SLFFGSALSSGQM---IDLLRDIV---REQ---------------QAEAVDMSDLLGVVH 293 Query: 320 N----ILNLYMPAGQEAEHRFAMGEL-PDEVLEIC-----QRLAKLTEMLRGLAELFLND 369 I + R A EL D+ ++ RLA LT L + Sbjct: 294 QFELAIDPCVLALKNARTDRIAWQELREDKTIQAAFDTLETRLADLTAAL---------E 344 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 L+ G + H +QM ++L F ++ +W R E+ L Sbjct: 345 LAAPRGK-GLASCHERAIQMRQSLSHFRRSEEI-----------TTEVRWLERREKSFTL 392 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHI-IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL 488 ++ G SD +E S P + SATL + FS L + Sbjct: 393 NITPMDAGQTFSDVVE-----SQPRAWVFASATLAAGKDFSHFTRRLNLNLALCQQ---T 444 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SPF++ Q + +P +P D + A F + + +LF S R ++ Sbjct: 445 PSPFDYPNQAIMYLPPNPPDPKTDPDYTLKILRAVFPVLKASGGR---AFLLFTSHRELK 501 Query: 549 RFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 + D + L L VQG Q + L+E R+ NG VL+G QSF EG+D++G+ LS Sbjct: 502 KAADILEGKLPFPLFVQGTQAKAALLEQFRQS-GNG---VLLGTQSFWEGVDVRGEALSV 557 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 V I +I F D PV +K PF +LP A Q VGRLIR G + Sbjct: 558 VMIDRIPFASPDDPVRRAREAQIKESGHSPFAAMALPEAIITFKQGVGRLIRDVTDRGVL 617 Query: 668 VIYDKRLLTKNYGKRLLDALP 688 V+ D RL +G+++LDALP Sbjct: 618 VLCDPRLQRTGFGRQILDALP 638 >UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8P3_9BACT Length = 646 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 191/683 (27%), Positives = 291/683 (42%), Gaps = 61/683 (8%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L ++P+F R QR++ + L + R LA EAPTGVGKT + LIP + A Sbjct: 11 LNARLPNFEYRRQQRELAEKIENFLQSDR-RLLAAEAPTGVGKTYAMLIPAMRWAVANNS 69 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 T++V T+ + LQ+Q+ KD+P L ++ DL + GRG Y C R + E + Sbjct: 70 TVLVLTSGITLQEQLIYKDIPALLDVLGLDLPYGLLKGRGNYACIRK-----AREIGAEG 124 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD--LWRRLSTDKASC 194 L F D+ + A GDL +++++ D R+++ +C Sbjct: 125 FLDFGGDKGQASRDISGWLYATETGDL-----------SELSLGDTHPARERIASSYLTC 173 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVAN-HALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 L C ++ C + R + V+VAN H + P P LL + DE H + Sbjct: 174 LGPYCPHHERCFYNKVMRSLSHWRVIVANYHVYFSYVLGQRKPFPAPFGLL-ICDEAHKM 232 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 D AR ++ ++ W RL L +L R P +R +L Sbjct: 233 EDAARAVTQVGVDVR-DWQRL-LRRAPRLDKVEASLLRSVDCPA----DRFAEEVADLSR 286 Query: 314 LIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEK 373 + S+ + L +P G+ EL ++ E+ + ++ L L E + Sbjct: 287 VSESVFDQLAARLPDGKN--FTAYPPELKNDTAELLVKCDRIIGHLDELQEAAAGGGRDA 344 Query: 374 TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWF 433 D R I N L F S W + P +WA REG L Sbjct: 345 NALQDDGR----IAVWNGELTAFR-DSLRW----CCDTQNYP--EWAYW--REGG-SLKS 390 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFN 493 CV SD + +I SAT+ SF +GL A D LDSPF+ Sbjct: 391 SCV--NGSDLIPPAFDDDEIKVIALSATMTVDRSFEYWANETGL---APDETAVLDSPFD 445 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 +I + + ++ +A + + ++ L +L A+ +L Sbjct: 446 LPSLMEIDVVDLGLQVMSPGYADAVARVCRKYARE-NGGATLILLSSRRLLTAVSAYLKM 504 Query: 554 VTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 + RL +LVQGD PR L+EL ++ ERSVLVG+ SF EG+D+ G+ L+QV I + Sbjct: 505 NAEKDRLNILVQGDLPRTELLELFKEN----ERSVLVGMASFREGIDVPGEALTQVIIDR 560 Query: 613 IAFPPIDSPVVITEGEWLKSL-NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 I FP PV GE L R F LP A L Q GRL+R+ G VVI D Sbjct: 561 IPFPHPGDPV----GEARAKLEGRENFVKAVLPGAKMQLRQAAGRLVRTGSDRGRVVILD 616 Query: 672 KRLLTKNYGKRLLDALPVFPIEQ 694 R++T+ K +LD+LP P+++ Sbjct: 617 GRIVTRPDWK-ILDSLPAVPVKK 638 >UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus RepID=C2BW38_9ACTO Length = 711 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 200/706 (28%), Positives = 303/706 (42%), Gaps = 98/706 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M A V +TL G LA++A TG GK+L YL+P + E +V+STA +A Sbjct: 55 RPGQAAMAAAVERTL--HSGGKLAVQAGTGTGKSLGYLLPALLYCLHEDARVVISTATLA 112 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTA-----AFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ QI +KD PL + + ++ +A G YVC L E ++ DL + ++ Sbjct: 113 LQSQIITKDAPLAVEAVQNVTGSALRVEVLKGWQNYVCLHKLN--GGYEGSEDDLFSTME 170 Query: 143 D----------ELTPN-----NQEEQKRCAKLKGDLDTYKW-----DGLRDHTDIAIDDD 182 D E T ++ Q A+ K Y+W G RD I Sbjct: 171 DSPFSGIAGSGETTAGPGARTTRQMQGFAAETK---RLYEWARETTTGDRDEAPRGITAR 227 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL-PDPK 241 WR++S C+ C + EC AR + +A++VV NHA++ +E+ P P Sbjct: 228 SWRQVSLSSLECVGEKCPFRSECFQVSARDKAAQAQIVVTNHAMI--GLEAAGKQNPLPP 285 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 +++DE H L + R + S E +A ++A+C K L + Sbjct: 286 CEAIIIDEAHELSERVRS--QASTEFSA-----------NMLASCA-----KAAASLGV- 326 Query: 302 ERLNAHCEELYELIASLNNIL-NLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 + EEL + L L NL + RF E+P V E C+ LA L+ + Sbjct: 327 ----SGSEELAQQAIMLGVALQNLE-------DSRFT--EMPAAVAE-CRMLA-LSPLKT 371 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA--PVTK 418 L E LS K G+ + A+ S L L ++ S A Sbjct: 372 ALTE-----LSAKAGADTESTGGQRADAAKIAVAKAALTSLLDTLETMTPESVANGETIL 426 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W TR R+G + + V+ +L LW II TSATL+ +F+ L GL+ Sbjct: 427 WLTR-GRDGDQEPRLYTAPLDVAGKLANRLWNE-HAIIATSATLKLGGTFAPLMHKMGLQ 484 Query: 479 -EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE--SKKHL 535 + + + SPF H QG + + R P+ E + F+ + V+ Sbjct: 485 LDTPKPETLDVGSPFRHDRQGILYLARDLPAPT-RGEHPDV-----FWNRLVDLVEASGG 538 Query: 536 GMLVLFASGRAMQRFLDYV---TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 G L LF+S + +R + + TDL +M VQG+ LV+ R+ + + L+G Sbjct: 539 GALGLFSSRKMAERAGEVLRERTDLPIM--VQGEDSMAALVKDMREDAS----ACLMGTL 592 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 S +G+DL G+ V I +I FP PV+ + +K F SL A+ L Q Sbjct: 593 SLWQGVDLPGNTCRLVLIDRIPFPVPSDPVIEARCDAVKRAGGSDFMEVSLTHAALLLAQ 652 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL-PVFPIEQPEV 697 GRL+RS G V + D RL T YG L +L P++P E +V Sbjct: 653 GTGRLLRSATDRGVVAVLDSRLATARYGGFLRASLPPLWPTEDSQV 698 >UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP2_SALAI Length = 699 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 195/713 (27%), Positives = 295/713 (41%), Gaps = 105/713 (14%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P R Q++M + ++ E HL ++A TG GK+L+YL P + + +VV Sbjct: 58 VPGGAARPGQQEMTTAIEAAVSARE--HLLVQAGTGTGKSLAYLAPALTV----DGPVVV 111 Query: 82 STANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQD 136 STA +ALQ Q+ DLP L + L F GR Y+C L EP Sbjct: 112 STATLALQSQLVDHDLPRLADAVEPLLGRRPTFAVLKGRHHYLCLARLDNATEEEPGDT- 170 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYK-W-----DGLRDHTDIAIDDDLWRRLSTD 190 L D+ TP+ +L + + W G RD D +DD WR +S Sbjct: 171 ----LFDQPTPSGTTWLGEAGRLGRQVQRLRDWAEKTDTGDRDELDPGVDDQAWRLVSMP 226 Query: 191 KASCLNR-NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 C+ C + EC +R +EA++VV NH+L+ M + + P + LLV+DE Sbjct: 227 ARECVGAARCPFGAECFADASRARAREADIVVTNHSLLAVDMLAGRHIV-PPHQLLVVDE 285 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H L D A Q +L +L+ + RP P Sbjct: 286 AHELADRVSSA-------------AQAELVPELIDRSTRRARPLLRP------------- 319 Query: 310 ELYELIASLNNILNLYM---PAGQEAEHRFAMGELPDEVLEICQRLAKLTE-MLRGLAEL 365 E E + + + L + + PAG R G LP + E C L T L + E+ Sbjct: 320 ETAEALTTAGDALAVGLAEAPAG-----RLTAG-LPAPLQEACTLLDAATRAALDAIGEI 373 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 +D D VR ++ ++ G + RL A W R + Sbjct: 374 KADD-------PDPVRKQQVKAVLDELSGTAQ------RLLDEADHD----VAWVERNDV 416 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA---- 481 G+ L + V+ L L+ ++ TSATL F + GL+ A Sbjct: 417 TGRRALVV--APLSVAGTLATHLYEDR-TVVATSATLTLGGRFDSVARALGLEAPAEAPV 473 Query: 482 --GDRFVALD--SPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLG 536 G + +LD SPF++ QG + + PS + AE+ + + LG Sbjct: 474 TSGPGWQSLDVGSPFDYARQGILYVAAHLPRPSASGLPDAAGAELLGLV--EALGGRTLG 531 Query: 537 MLVLFASGRAMQR---FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 LF+S RA Q+ L TDL ++L QG+Q LV R+ + S L G+ S Sbjct: 532 ---LFSSRRAAQQAAELLRARTDLPVLL--QGEQALPLLVRRFREE----QSSCLFGVMS 582 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 +G+D+ GD V I ++ FP D P+ + + F S+P A+ L Q Sbjct: 583 LWQGVDVPGDACQLVVIDRLPFPRPDEPLAAARAAAVDADGGSGFAAVSVPIAAVRLAQG 642 Query: 654 VGRLIRSHGCWGEVVIYDKRLLT-KNYGKRLLDALPVF-PIEQPEVPEGIVKK 704 VGRLIR+ G G V + D RL T + YG L +LP F +P+V G +++ Sbjct: 643 VGRLIRATGDRGVVAVLDSRLETARGYGPFLRRSLPPFWYTTRPDVARGALER 695 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 178/712 (25%), Positives = 313/712 (43%), Gaps = 88/712 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + +P + R Q++MI V + L E ++L +EA TGVGK+L+YLIP + + ++ Sbjct: 253 LADVVPGYEYRPQQQEMIRLVTRAL--NEEKYLLMEAGTGVGKSLAYLIPSVLWSCLNRQ 310 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALAST--EPTQ 134 ++V+T + LQ+Q++ KD+PL K+ K + GR Y+C R ++ +P + Sbjct: 311 RVLVATRTINLQEQLWHKDIPLAAKVTGRPFKASLVKGRQNYICLRRWFSVLENPHQPQE 370 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 A + LT + K +L+ I ++D W + + C Sbjct: 371 AGFFARVLTWLTVTQTGD-------KSELNV-----------IPAEEDFWLSICGESDGC 412 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDEGHHL 253 + C Y + C A+RE +E+ +++ NH+L+ + ++ E +LP + L++DE HHL Sbjct: 413 MGSRCRYLKYCFVNAAKREAEESNLIITNHSLLFSDVKVENRILPAYEA--LIIDEAHHL 470 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR-PKTIPPLAIPERLNAHCEELY 312 + A + + ++T Q L L A FR + +PP + + + Sbjct: 471 EESA--TVHLGRQVT------QGALNRWLSAAGKALFRLAEKVPPEDVEKWSETIKDSRE 522 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 L+ + N+ + G+ A A+ + I RL+ E L + S Sbjct: 523 VLLEAQGNVHFFFQQLGELAS---ALSNDEGDSGRITLRLSN---------EKMLANTSY 570 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLA---------SLAQ--SSGAPVTK--- 418 R L L +N +G ++W + L Q +SG + Sbjct: 571 NAVLECGTRCIELFLSLNGKIGYIAKVLEMWGITEEVWAEAARDLFQIYNSGQTIIDDLQ 630 Query: 419 ------------WATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL 465 WA E R G + + + V L +++ +I +SAT+ Sbjct: 631 FILEGREQGFVYWAEFEYSRRGFKNYALYAAPVNVGTVLYEQFFKNRGTVIFSSATISVN 690 Query: 466 NSFSRLQEMSGLKEKAGDRFV--ALDSPFNHCEQGKIVIPR-MRVEPSIDNEEQHIAEMA 522 +F + +GL ++ + + DSPF Q + I + V+ ++ EE ++ + Sbjct: 691 GTFDHFIDRNGLNNFPPEKIIKASFDSPFAFERQALLCICHDLPVQGAV-AEEVYLDNLE 749 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQ---RFLDYVTDLR-LMLLVQG-DQPRYRLVELHR 577 K +E+ LVLF S + ++ R L + R + +L G D R L+E + Sbjct: 750 EAILKLLEAVGGR-TLVLFTSHKVLRETYRRLKPRMEARGICILGHGIDGNRLNLLEEFK 808 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 ++VL G SF EG+D+ G+ LS V + K+ F PV+ E L R Sbjct: 809 STA----QTVLFGASSFWEGVDVPGEALSCVIMVKLPFVSPSVPVIEARLEDLARRKRDG 864 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 F S+P A Q GRLIRS G V++ D+R+L+++YG+R L++LP+ Sbjct: 865 FRDLSVPQAVIRFKQGFGRLIRSGSDRGCVIVLDRRILSRSYGRRFLNSLPL 916 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 179/694 (25%), Positives = 300/694 (43%), Gaps = 74/694 (10%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ V + + EE H+A+EA TG+GK+L+YL+P A EQK +++ST VA Sbjct: 258 RPAQFEMMDHVREAFSVEE--HVALEAGTGIGKSLAYLVPAAFQAISEQKPVLISTYTVA 315 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 L+ Q+ +K++ L++++ T GR Y+ + EP +Q F ++ Sbjct: 316 LEHQLLNKEIKRLEQMLKTPVRTVLLKGRSHYLHLFKFEQ-SLKEPDRQYDAVFAKMQIL 374 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 E + GDLD G H W+R+ D ++ + R+ Sbjct: 375 VWLTETES------GDLDELHLSGGGKH--------FWQRIKQDGWHTDKKDPWKSRDF- 419 Query: 207 FFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE 266 + A+ A++ V NHA++ A +E + + D +++ DE H L AR+ + A Sbjct: 420 YLYAKACAASADIAVTNHAMLCAELERDQSVFDGFQYVII-DEAHRLEQAARETIGKRAS 478 Query: 267 ITAPWYRL-------QLDLFTKLVATCMEQFRPKT----IPPLAIPERLNAHCEELYELI 315 Y + Q LF KL ME++ K AI + L+A ++L+ ++ Sbjct: 479 YNQMKYMMARLGLYEQKQLFYKL-EKVMEKYGLKASLHAFECDAILQALDAELDDLFGML 537 Query: 316 AS----LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRL-AKLTEMLRGLAELFLNDL 370 A N N Y + + VL +R+ A + E+ + L E L Sbjct: 538 AQKVLRANRETNGYQKIKLRIKKENWKQKAWQAVLLCTERIRASMKEISQALEERLSQLL 597 Query: 371 SEKTGSHDIVRLHRLILQMN-RALGMFEAQSKL---WRLA--SLA----QSSGAPVTKWA 420 SEK QM +AL E WRL +LA Q+ G W Sbjct: 598 SEK--------------QMKEQALAFIEEMYSFLEDWRLLRDNLAIFAGQNGGDENVVWV 643 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 + R L +C + + L++ + +++TSATL SF + +GL Sbjct: 644 EGDLRALPNSLVIYCQPVHAGEILQKAFFSRKKSVVLTSATLTVGGSFRYFLDETGLAHT 703 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 + V + SPF Q + +IP + + E +MA + E+ K M++L Sbjct: 704 T--KTVRIPSPFRFDRQVQFIIPNDLPDIGSVSIEDFAEKMAGYLLAVAEATKG-RMMIL 760 Query: 541 FASGRAMQRFLDYVTDLRL----MLLVQG--DQPRYRLVELHRKRVANGERSVLVGLQSF 594 F S ++ + + + M + QG R RL + +K +++L GL SF Sbjct: 761 FTSFDLLKNVYHLMKESGMLEDYMFIAQGISSGSRSRLTKSFQKF----GKAILFGLSSF 816 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+ GD LS + + ++ F P D PV + ++ ++ + PF +LP A Q Sbjct: 817 WEGVDIPGDDLSCLVMARLPFLPPDEPVTEAKSDYFRAKGKNPFSAYALPEAVLRFKQGF 876 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 GRLIR+ G ++ D+R+ T YG +LP Sbjct: 877 GRLIRTRHDRGIFLVLDRRIETATYGPAFTKSLP 910 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 184/689 (26%), Positives = 306/689 (44%), Gaps = 86/689 (12%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F R Q+QM+ DV L + +H IEA TGVGKT++YL+P + A ++Q+ +VVST Sbjct: 251 FEYREGQKQMMDDVNYAL--QTCQHALIEAGTGVGKTMAYLLPTVFYAVKQQQPIVVSTY 308 Query: 85 NVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 + LQ Q+ K+LP + +++P FT A +G+ RN ++ T + + D Sbjct: 309 TLQLQKQMIEKELPRVAQLVP-FPFTTAVLKGK----RNYMSVRKFARTLKHIDTNYDIA 363 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL-WRRLSTDKASCLNRNCYYYR 203 LT +C L +T D D ++ L W + +D + Sbjct: 364 LT--------KCQLLVWLTETETGD--VDELNLTAGGALFWEDVHSDDTN---------E 404 Query: 204 ECPFFV-ARREIQEAEVVVANHALVMAAMES-EAVLPDPKNLLLVLDEGHHLPDVARDAL 261 E FFV A+ + + A V++ NH+ VM + + E LP + L ++DE HHL DVA A Sbjct: 405 EYDFFVRAKEKAKHAHVIITNHSFVMHDLTADEKWLPPYEQL--IIDEAHHLEDVA--AH 460 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE-ELYELIASLNN 320 ++ + RL L+T++ M I + L E EL +L SL + Sbjct: 461 FFGRHVSYEYIRL---LWTRMNDIAM-------IHKMGALRSLLGDLEYELNQLFQSLRH 510 Query: 321 ILNLYMPAGQEAEHRFA-MGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 + +RF E E + L ++ ++ L+++ +ND+ ++ D+ Sbjct: 511 YVLRRQKGDGRIRYRFVPWKEYGKEWSGTIELLMRIMNDVQQLSQM-INDIPKE----DV 565 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 I L L L S + +W + + + + Sbjct: 566 KPFTTFI-------------DTLRTLQHLLTSDDDDIVRWLEVDAKAAVNAVTVISQPLD 612 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD----SPFNHC 495 ++ L+ +I+TSATL + FS + GL D F SPF++ Sbjct: 613 LAHFFADQLFSRKRSVILTSATLTTNGRFSFIIARLGL-----DDFYPFTRIIPSPFSYE 667 Query: 496 EQGKIVIPR-MRVEPSIDNEE--QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 +Q +++P + PS+ E+ +H A+ + + + MLVLF S +++ Sbjct: 668 KQAALMVPTDLPTFPSVTVEQYAEHAAQQVIRIARHTKGR----MLVLFTSYELLKQTYA 723 Query: 553 Y---VTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 Y D + +LL QG +L R E+++L G SF EG+DL G ++ V Sbjct: 724 YAKQFNDDQFVLLAQGVSGG-NAAKLTR-HFQQFEQAILFGTSSFWEGIDLPGSEVTCVV 781 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I ++ F P D PV+ + +++++ PF SLP A Q GRLIR+ G + + Sbjct: 782 IVRLPFAPPDDPVMEAKSDYIRAKGGNPFYDLSLPQAILRFKQGFGRLIRTKEDRGIIFV 841 Query: 670 YDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 +D+RLLT +Y K L +LP PI P Sbjct: 842 FDQRLLTASYSKYFLQSLP--PIRVYHAP 868 >UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_ACIBL Length = 674 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 178/689 (25%), Positives = 289/689 (41%), Gaps = 89/689 (12%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P + R Q QM V + L E RHL +EA TG GKTL+YL+P I +++S Sbjct: 35 PAYEFRRGQLQMAQAVEQALT--EKRHLIVEAGTGTGKTLAYLVPVI----RSGLRVIIS 88 Query: 83 TANVALQDQIYSKDLPLLKKII----PDLKFTAAF--GRGRYVCPRNLTALASTEPTQQD 136 T LQ+Q++ KD+P L++ I D K + GR Y+C + L L S P Sbjct: 89 TGTKNLQEQLFYKDVPFLERAIFGAESDQKLKVCYMKGRNNYLCRKKLYDL-SDRPVLNG 147 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 L +E+ Q + GD + T + LW +L +C+ Sbjct: 148 L-----EEIDQFRQIREWEAVTTTGDR--------AELTAVPEASLLWPKLDARADACVG 194 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPD----PKNLLLVLDE 249 C + C RR E+++++ NH L A + ++ PD P+ ++ DE Sbjct: 195 SKCKDFERCFITEMRRTAMESDIIIVNHHLYFADLAIKQAADGAPDVGILPEAAAVIFDE 254 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H L DVA +SA +++D + V +++F + L +R + Sbjct: 255 AHELEDVAGSYFGVSAS------NVRVDDLVRDVEFAIKEFHIASPTLLQASQRARERSQ 308 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 + L+ P G E RFA E E LE + + + L L+ Sbjct: 309 LFFSLV-----------PQG---EGRFAF-ENRKEFLE--ENGEEFLALQNALGHLYSEI 351 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW------ATRE 423 + K ++ L R ++ +L+ L +S+ W + R Sbjct: 352 QALKEKPDELFNLARRTEELR------------VQLSFLLESNDKNTVYWVERRGESRRA 399 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 R+G +++ I VS L+R L+ ++ ++TSAT+ F + GL++ Sbjct: 400 GRQGH-NVFLQATPIDVSAILQRTLFANLNTAVLTSATIAVGGGFQYARGRLGLQDA--- 455 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSI-DNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 R + + S F++ Q +P P + D EQ + AA +Q+ LF Sbjct: 456 RELVVPSHFDYETQAVFYVP-----PDMPDPREQLFSRKAADRIRQLLEITRGRAFCLFT 510 Query: 543 SGRAMQRFLD-YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 S M D + +L +L QGD P+ L+E R +VL SF +G+D++ Sbjct: 511 SYAQMNDVYDRLLGELDYPMLKQGDAPKSALLEEFRTTPG----AVLFATSSFWQGVDVQ 566 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 G+ LS V I ++ F + PVV + + F +PSA L Q GRLIRS Sbjct: 567 GEQLSCVIIDRLPFAVPNDPVVAARIRAIDADGGNAFFDYQVPSAVIALKQGFGRLIRSL 626 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 G V + D R+L K YG+ +++LP + Sbjct: 627 HDRGVVCLLDNRILKKQYGRVFVESLPKY 655 >UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-terminal n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87EB6 Length = 643 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 170/717 (23%), Positives = 294/717 (41%), Gaps = 124/717 (17%) Query: 7 LKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +K+ I ++ L E I + R Q +M V + +E L +EA TG+GKT + Sbjct: 2 VKSTITEFFDVNGPLSEVIEGYQIRPSQVEMSQMVDAAIKNQE--PLVVEAGTGIGKTFA 59 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCP 121 YL P +A + +++STA LQDQ+++KD+P +++ IP +K GR YVC Sbjct: 60 YLAPALAAGGK----VIISTATKNLQDQLFNKDIPKIREALKIP-IKVNLLKGRANYVCQ 114 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPN---NQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 L DD + N+E+ K+K D + + ++ Sbjct: 115 LRL-----------------DDSIQGGQFVNKEDGAYLEKIKQFSDHSNSGEISEVENVP 157 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP 238 +W +++ +CL + C + + C AR+E AEVV+ NH L A + +L Sbjct: 158 EFSTIWPMVTSTADNCLGQGCEFAKSCFLLKARKEALNAEVVIVNHHLFFA----DFMLK 213 Query: 239 D-------PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 D PK ++ DE H +PD+A + Y +Q Sbjct: 214 DEDISEILPKADTVIFDEAHQVPDIASIFFGNNFSTNELIYLMQ---------------- 257 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH-RFAMGELPDEV-LEIC 349 + ++L + ++L ++ + + +E +H R G + V E Sbjct: 258 ----DAQLLYDKLGKNQKKLIDIASGVQ----------EEIKHLRLEFGSSSERVTFEKI 303 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS-KLWRLASL 408 + K TE L+ +H Q+ + + + QS + ++ Sbjct: 304 TNIDKFTEKLQS--------------------IHSSFEQLGKIFSLLDDQSPEQKKIMER 343 Query: 409 AQSSGAPVTKWATREEREGQLHLW---------FHCVGIRVSDQLERLLWRSIPHIIVTS 459 + ++ W +E+ Q W F+ +++ R ++ I TS Sbjct: 344 YEGILEKLSHWL--KEKNDQYVYWLDIFSKSIQFNMTPFSIAEGFGRFRKQNKISWIFTS 401 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 ATL +SF Q + GL + + L+SPF+ + +P +P+ I Sbjct: 402 ATLAVNDSFDFFQNLMGLSDATSKK---LNSPFDFKNNACLYVPNNMPDPNSSIFNLTII 458 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT------DLRLMLLVQGDQPRYRLV 573 + + + + +L S ++M+ + D+ +L QG+ + L+ Sbjct: 459 KKTYPLIQAAKGR----TFILSTSLKSMREISALLKSEFEEHDINFPILTQGEDSKRTLI 514 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 E R + +VL+G SF EG+D++G LS V I K+ F PV + LK+L Sbjct: 515 E----RFKSYGNAVLIGSMSFWEGIDVRGPSLSLVIIDKLPFHSPGDPVFESRINRLKAL 570 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 PF LP A +L Q GRLIR G ++I D R++ K YGKR+ +LP F Sbjct: 571 GENPFMSFQLPQAIISLKQGAGRLIRDEIDKGVLMICDPRIIDKPYGKRIWKSLPDF 627 >UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A0KWC1_SHESA Length = 674 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 184/690 (26%), Positives = 303/690 (43%), Gaps = 105/690 (15%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + I F R Q +M +++ +A +G L IEA TGVGKT +YLIP I ++ Sbjct: 52 LAKHIQGFSARQSQVEMAQIISEAIA-SKGNAL-IEAGTGVGKTFAYLIPAILSGKQ--- 106 Query: 78 TLVVSTANVALQDQIYSKDLPLLKK---IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ++VST + LQ+Q++ KDLP L I P L GR Y+C L Sbjct: 107 -VIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLK--GRNNYLCQHRL---------- 153 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDL-DTYKWDGLRDHTDI------AIDDDLWRRL 187 D ++ QE A+L DL +W G+ DI A + + Sbjct: 154 -------DKQM----QEASHIEARLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLV 202 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHAL-----VMAAMESEAVLPDPKN 242 + K +CL + C +Y C AR +A+++V NH L V+ +LPDP Sbjct: 203 VSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHHLFFADSVLKDTGFAELLPDPD- 261 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 +++ DE H LP +I ++ Q ++ + +++ L+ Sbjct: 262 -VVIFDEAHLLP-----------DICVSYFGQQSS--SRTIDDYLQKLLQIYQTELSDTG 307 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 ++ C+ ++ +N L +G E++ R +G L LA+LT + + L Sbjct: 308 QIAQFCQRCLTKLSDWHNAL---FSSG-ESDWRLQLGN-KSIALASWDLLAELTALQKLL 362 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 +V + R L + A+ + E KL + + A ++ +R Sbjct: 363 ----------------LVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYSVEFGSR 406 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL---RSLNSFSRLQEMSGLKE 479 + I ++ + ++L + I TSATL RSL+ F+ QE+ Sbjct: 407 -------FVMLRMSPINIARECQQLFVANTSWIF-TSATLQVNRSLDHFA--QELGISDA 456 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 KA LDSPF++ Q +PR ++ N++Q + ++ K +E+ + + Sbjct: 457 KAH----ILDSPFDYPRQALFCVPRQL--GNVTNQQQALKQLVDVCVKAIEAAQG-RTFI 509 Query: 540 LFASGRAM-QRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 LF S + + Q L T + LLVQG + L+ R+ + N +VL+G SF EG+ Sbjct: 510 LFTSHKMLEQTALALRTRTQYPLLVQGQAGKQSLLTKFRQ-LGN---AVLLGTSSFWEGV 565 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D++G LLS V I K+ F D P+ + + PF SLP A L Q VGRLI Sbjct: 566 DVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLI 625 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 R G +++ D R++ + YG+ L++LP Sbjct: 626 RDEKDCGVLILCDNRIVNRAYGQAFLNSLP 655 >UniRef50_Q840H8 Putative uncharacterized protein (Fragment) n=2 Tax=Pseudomonas RepID=Q840H8_PSECL Length = 386 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/368 (30%), Positives = 179/368 (48%), Gaps = 22/368 (5%) Query: 334 HRFAMGELPDEV----LEICQRLAKLTEMLRGLAELFLNDLSEKT----GSHDIVRLHRL 385 HRF G +P+ + +E+ + A+LT++ L +L + + S+ + L Sbjct: 25 HRFVGGVIPEHMREMGIELKKGFARLTDLFTRLTDLLKEGMDGEVNIGIASNQAEEWYPL 84 Query: 386 ILQM-NRALGMFEAQSKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQ 443 + +R+ G +E LW + P+ +W T E + + I + Sbjct: 85 FGSLLSRSQGNWE----LWTAFTAEDPEDNPPMARWLTLAESGSLFDIEVNASPILAEEM 140 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIP 503 L R LW +VTSATL +L +F R + +GL +KA V SPF+H + G + +P Sbjct: 141 LRRNLWNVAYGALVTSATLTALGTFDRFRMRAGLPKKAVTAVVP--SPFHHADAGVLRVP 198 Query: 504 RMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLL 562 ++ +P + H A + + VE + G LVLF+S + MQ D + D R + Sbjct: 199 DLKADPR--DAAAHTAAIIRDLPELVEGSR--GTLVLFSSRKQMQDVFDGLDRDWRKQVF 254 Query: 563 VQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 +QG+ + + H+ RV G+ SVL G + F +DL G V I KI F D PV Sbjct: 255 IQGNLSKQETLNKHKARVDGGDSSVLFGCE-FCRSVDLPGAYCEHVVIAKIPFSVPDDPV 313 Query: 623 VITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR 682 EW+++ PF S+P AS L+Q GRL+R+ G + + D+RL+T+ YGK Sbjct: 314 EAALAEWIEARGGNPFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGKA 373 Query: 683 LLDALPVF 690 +L+ALP F Sbjct: 374 ILNALPPF 381 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 176/720 (24%), Positives = 313/720 (43%), Gaps = 97/720 (13%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L E + + RA Q++M + H IEA TG GK+L+YL+P + A ++ + Sbjct: 250 LSEHLSMYEKRAGQQEMSETIYDAFTS--SNHALIEAGTGTGKSLAYLLPAVYYAVKQNQ 307 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEP--- 132 +++ST LQ Q+ +++PL+ I D+ F AA G+ Y+ + + Sbjct: 308 KVIISTHTTQLQSQLLEEEIPLIHAI-SDIPFQAALLKGKNHYISLEKFSIELYEQGQDN 366 Query: 133 -----TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 T+ LL ++ + T + +E Q + +R++ Sbjct: 367 YDIALTKAMLLIWITETNTGDVEEVQLPTSGYI----------------------FFRKI 404 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE-AVLPDPKNLLLV 246 S D +N +++ + AR++ Q A +++ NHAL+ M ++ A LP + + + Sbjct: 405 SADTEKAVNPQSPWFQYSYYQQARKKAQRANIIITNHALLCTDMFNDYAFLPSYQRV--I 462 Query: 247 LDEGHHLPDVA-------RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 +DE HH + A D + M + LF V Q IP Sbjct: 463 IDEAHHFEEQAAHHYGLKMDYMSMQFTCNQLGSSEEDKLFGNFVQAY--QLSNSDIPLYE 520 Query: 300 IPERLNAHCEELYELIASL------NNILNLYMPAGQEAEHRFAM-GELPDEVLEICQRL 352 + L + +E+ +L ++ ++ N + ++R E D I Sbjct: 521 WNDTLKSAKQEIEDLFQAIYYYVSKQHLSNQALSDVGRIQYRMDTEKETGDSWQVILDMS 580 Query: 353 AKLTEMLRGLAELFL--------NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 ++L+ R L + D SEK +++++ L + R + E Sbjct: 581 SRLSLYFRDLIHILFMVEQRINQEDNSEKNHREELLQMVEL---LQRYIDGLE------- 630 Query: 405 LASLAQSSGAPV--TKWATREEREGQLH-LWFHCVGIRVSDQLERLLWRSIPHIIVTSAT 461 L SG V KW +++GQ H ++ + V++ LE + +++TSAT Sbjct: 631 ---LMFYSGGEVEQIKW-IEIDKKGQNHSVFLYSEPADVAELLENEFFHEKESVVMTSAT 686 Query: 462 LRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVE---PSIDNEEQHI 518 L +SFS +Q+ GL + ++SPF + +Q ++ IP + +ID+ + Sbjct: 687 LTMNHSFSFMQKRLGLSSHSCIT-EQIESPFAYDQQVQMFIPNDFPDIKYGNIDDFVYAV 745 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQG--DQPRYRL 572 AE A ++ S + MLVLF S +++ + + + ML+ QG R RL Sbjct: 746 AE-AIISLAEITSGR---MLVLFTSYDMLRKAYYVLKEAMEKDKYMLIGQGITSGSRARL 801 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 +K + ++++L+G SF EG+D+ GD LS + I ++ F P + PV+ + LK Sbjct: 802 ----KKNFQSFDQAILLGTSSFWEGVDIPGDDLSSLVIVRLPFQPPNHPVIEAKSAMLKK 857 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 + PF SLP+A Q GRLIRS G V + D R++ YGK +++P PI Sbjct: 858 QKQNPFMELSLPNAVIKFKQGFGRLIRSSNDRGIVFVCDARIVNARYGKYFTESIPKVPI 917 >UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 RepID=B6BV17_9PROT Length = 640 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 174/694 (25%), Positives = 300/694 (43%), Gaps = 105/694 (15%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + ++ R Q QM + +++ + + + IEA TG+GKTL YL+P + R+ +K Sbjct: 18 LASHLSNYQKRDGQVQMAQFIDESVTLK--KTVVIEAGTGIGKTLGYLLP---LVRQNKK 72 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEPTQQ 135 +++STA LQ+Q+ KD P+L+K + L F + GR Y+C + + ++ Sbjct: 73 -IIISTATKNLQEQLLEKDFPILQKALK-LNFNVSILKGRSNYLCHHRINNHSKMFFSKA 130 Query: 136 DLLAFLDDE--LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 D F D E L N + A+LK + ++ +++ + Sbjct: 131 DASIFSDVEGLLKKTNTGD---VAELKKNFSG----------------NITHAVTSTSEN 171 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL-----LVLD 248 CL +C + +C ARR AEV+V NH L + +E D NLL +V D Sbjct: 172 CLFGDCKFSNDCFVNKARRRAHSAEVIVVNHHLFFSDFFNEN--DDANNLLPKSDVIVFD 229 Query: 249 EGHHLPDVARDALEMSAEITAPW--YRLQLDLFTKLVATC--MEQFRPKTIPPLAIPERL 304 E H+L D+A + S+++ + R+ DL L + +E F I R Sbjct: 230 EAHNLIDLA---MLYSSKVFSSLKLNRVLDDLINHLKNSVIGLENFS-------MIFNRY 279 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 N +L +L+ ++LY + + D ++EI L +L ++ Sbjct: 280 NFSISQLLDLVKDEPQKISLYKLS--------QLTTFKDHLIEIMNNLEELINAIKEPG- 330 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 F+N K I L+ I + + E ++ LW L S Sbjct: 331 -FIN----KDIDASIKELNNFIELLKNIINPSEKKNALW-LEKFNNS------------- 371 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + H + V + S ++ TSAT+ + N+F ++++GLK+ Sbjct: 372 ------ISIHITPVDVKGIFSKT-TASNDSMVFTSATMTTNNNFDYFKDLTGLKDIETRV 424 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 F +SPFN+ + + IP P NE+ + + + ++ K + + + Sbjct: 425 F---ESPFNYEKNALLHIPMGLPNP---NEKDFFSSLVDYAYPAIKLNKGRTLFLTTSLN 478 Query: 545 RAMQ-----RFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 Q F++ L +L QG P L+E N + VL+G SF EG+D Sbjct: 479 GVEQVANQFEFINNRNADTLNILRQGMLPNQLLIE----EFKNSQNCVLIGSFSFWEGID 534 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS-LPSASFNLIQQVGRLI 658 L GD L+ + I K+ F D P+V + + LN F ++S +P + + Q +GRLI Sbjct: 535 LIGDNLTLLIIDKLPFKSPDDPIVDAK---INLLNEKDFFMKSQIPMTTLLMKQGMGRLI 591 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 R+ G ++ D R+ K YGK++L +LP F + Sbjct: 592 RNFSDKGVAILGDNRIQKKYYGKQILKSLPPFQL 625 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 180/708 (25%), Positives = 303/708 (42%), Gaps = 90/708 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ V +E H AIEA TGVGKTL YL+P IA E +V+ST Sbjct: 259 RNQQIKMMDAVYDYFTSDETSHFAIEAATGVGKTLGYLLPLAYIASVENP-VVISTYTTL 317 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALAST--EPTQQDLLAFLDD 143 LQ Q+ KD+ L I+P AA + Y+ +LT EP Q + Sbjct: 318 LQKQLLDKDIVQLNTILP-FTVQAAILKSKNHYI---HLTKFEEVLKEPVDQKVEVIYQM 373 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 +L E + GDLD L ++ + W ++ +Y Sbjct: 374 KLLTWLTETET------GDLDEL---NLTNYNHL-----FWNKVRHRGWLTRPEEDRWYD 419 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAME-SEAVLPDPKNLLLVLDEGHHLPDVARDALE 262 E + A+ +I+ A V++ NH+ + + E LP L ++DE HLPDVA +E Sbjct: 420 EDFYVHAQHKIKHASVIITNHSFLCHDLNRKEKELPSIGKL--IVDEAQHLPDVA---ME 474 Query: 263 MSAEITAPWYRLQLDLFTKLVATCMEQ----------FRPKTIPPLAIPERLNAHCEELY 312 S+EI +YR+Q KL+ E+ + T ++ E + + L Sbjct: 475 ASSEIFG-YYRMQQ--IIKLIGRASEEKSFLGRITQLSQQLTKIEVSYIENMEMNIFSLE 531 Query: 313 ELIASLNNILNLY----------------MPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 + ++ N L LY + +E A+ + +VL + ++ L Sbjct: 532 DELSDFINQLLLYCKNTAGNKHSQQEQMDIQFNRETHWNLALKKASKKVLTLMNEISYLG 591 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQ-MNRALGMFEAQSKLWRLASLAQSSGAP 415 E+ L+E+ H + + R + + + FE+Q ++ A ++ Sbjct: 592 ------YEVVNQGLNEQ---HQLTQKERYLFEDFFDVISTFESQKDIF-YAVFQENEENE 641 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 VT W + +E+ + + S ++ L P+I+ T ATL SF+ + Sbjct: 642 VT-WFSYKEKSPKNSFTIKRSKVDSSKFIKEKLVDKTPYILYTGATLEINQSFNYFETQL 700 Query: 476 G---LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 G LKE + ++SP+++ +Q ++ +P+ ++P ++ M + Sbjct: 701 GEENLKE------LIIESPYDYKKQARLWVPK-ELKPIKGLSKKEYVHMVVEQVGNIIEN 753 Query: 533 KHLGMLVLFASGRAMQRFL-----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 +VLF S +Q + V R +L R R++ KR + Sbjct: 754 SVENTMVLFNSYEMLQEVYFSLQQNPVASGRELLAQGFSGSRDRML----KRFFRSTGGI 809 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L+G SF EG+DL G LS + I ++ F D P V + +L+ + PF + SLP A+ Sbjct: 810 LLGADSFWEGVDLPGKSLSIIVITRLPFESPDRPFVKAKHRYLEQKHLNPFTIDSLPKAT 869 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQ 694 L Q +GRLIRS G +++ D RL+ +YGK+++ +LP PIE+ Sbjct: 870 LRLKQGLGRLIRSEKDKGVMIVLDNRLIQTSYGKQIVSSLPKGLPIEE 917 >UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Treponema RepID=Q73L75_TREDE Length = 709 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 161/697 (23%), Positives = 286/697 (41%), Gaps = 88/697 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R PQ + + + EE + EA TGVGK+L+YL+P + A++ +K +V+ST + Sbjct: 42 REPQLALTKSICRCF-NEEAIGV-FEAGTGVGKSLAYLLPAMMWAKQNKKRVVISTGTIN 99 Query: 88 LQDQIYSKDLPLLKKII----PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 LQ Q+ KD+ KKI+ D+K GR ++C R +T A ++ Sbjct: 100 LQQQLIEKDVLTAKKILGKGFQDMKACLVKGRHNFLCLRRMTQ------------ALREN 147 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 + QEE + + T DG R D + +W + ++ +C C Y+ Sbjct: 148 DFFTEGQEELDKIKEWA----TETKDGSRSDLDFMPTEKVWSTVCSEPDNCPMNKCPYFS 203 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAM---------ESEAVLPDPKNLLLVLDEGHHLP 254 C +RE + + ++VANH ++ A + + AVLP N +++DE H + Sbjct: 204 GCFVMKLKREAENSSILVANHHILFADLSVRAEGFGYQGTAVLPSYDN--IIIDEAHGIE 261 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 D A+ S++I+ Q++L + R K L+ ++ E E+ Sbjct: 262 DAAQSFF--SSDISRFALHKQINLLYRFR-------RGKQAGILSGIVSISKKAELFTEI 312 Query: 315 I-------ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 I AS N + + Q + + DE ++ + + + L Sbjct: 313 INLLEVAAASFNILEEQALQVLQTYQSKSLAQTSSDEKEKLLSCVDNFFKNINNLNIKLE 372 Query: 368 NDLSEKTGSHD-----------IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 N ++ G D + RL ++ M L E + ++ + S G V Sbjct: 373 NLINAADGEEDEEGYIREGLVVLRRLKKMASVMENFLNSSEFPNDVFWFEKIKTSQGEAV 432 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 F + ++ + R ++ + +I SATL+ + F+ +G Sbjct: 433 R---------------FIQTPLNLAPIMRRSVFMPMATVICVSATLKIGDDFNFWLNRNG 477 Query: 477 LKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 L + + SPF + + IP P +N + + E + + K Sbjct: 478 LYNFTEKKIIKDFFPSPFPYEKNVVFNIPTDMPMPDENNFQDAVNETVLALLEITQGK-- 535 Query: 535 LGMLVLFASGRAMQRFLDYV---TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL 591 L+LF S ++Q+ +YV D ++ +L QG+ R +L+ + V S L Sbjct: 536 --TLILFTSYDSLQKTCEYVREHIDEKIKILKQGEADRMQLLYEFKDDVT----SCLFAT 589 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 SF G+D+ G+ LS V + K+ F P+ + ++ F S+P A Sbjct: 590 SSFWAGVDVPGESLSHVILVKLPFAVPTEPIFKARADLIEKSGGNSFMQLSVPEAVVQFR 649 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 Q GRL+RS+ G V + DKR+L K YG + ++P Sbjct: 650 QGFGRLMRSNTDRGIVTVLDKRILVKRYGSIFIQSIP 686 >UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3_GORB4 Length = 699 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 196/720 (27%), Positives = 297/720 (41%), Gaps = 122/720 (16%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M + VA + + G HLA++A TG GK+L+YL+P I A + +T+VVSTA +A Sbjct: 23 RDGQVTMASAVAHAI--DTGEHLAVQAGTGTGKSLAYLVPAIRHAVDSGRTVVVSTATIA 80 Query: 88 LQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ +DLP L + + F GRG Y+C + A + EP + F Sbjct: 81 LQRQLIERDLPRLAGALKGPLGREPTFAILKGRGNYLCLNKIHAGTADEPDTELFDPF-- 138 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYY 201 EL+ + E R + D +T G RD ++D WR++S CL NC Y Sbjct: 139 -ELSRTGR-EVTRLREWSSDTET----GDRDDLTPGVNDRAWRQVSVTARECLGAANCSY 192 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 +C VARR + +VVV NHAL+ S A + P++ ++++DE H L D R Sbjct: 193 GEDCFAEVARRRSAKVDVVVTNHALLSIDATSPASIL-PEHDVVIIDEAHELVD--RITS 249 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 +AE++A L L C + +T+ + L A E+ EL+A + Sbjct: 250 VSTAEVSAATIAL-------LARRCGKLVDEETV------DALEAAGEQFGELLADAPHR 296 Query: 322 LNLYMPAGQEA----------EHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 + +PA + + R ++G + A + L L EL Sbjct: 297 QWMSLPASAASVLVALRDRLWQTRTSIGPIRMSGAADESAAAARSAALTSLDEL------ 350 Query: 372 EKTGSHD-IVRLHRLILQMNRALGMFEA--QSKLWRLASLAQSSGAPVTKWATREEREGQ 428 HD IVRL LG F+ +SK + +A+ T + + Sbjct: 351 -----HDTIVRL----------LGAFDEPDESKRRDVVWVAEER----TSRSPSADTRPV 391 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA-GDRFVA 487 LH+ VG L R + +I+TSATL SF L GL G A Sbjct: 392 LHIAPLSVG-----GLLRATLFAQSTVILTSATLAIGGSFDALAATWGLPASGRGADTPA 446 Query: 488 LDSP-----------------------------------FNHCEQGKIVIPRMRVEPSID 512 +D+P F++ + + R P D Sbjct: 447 VDAPAGAGANPVSDVTASGKAVPRDEQRVRWTGLDAGSPFDYPRSAILYVARHLPRPGRD 506 Query: 513 N-EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRY 570 E+ + E+A + LG LF+S RA + + + + +L QG+ Sbjct: 507 GIAEKTMTELAELI--DAAGGRTLG---LFSSMRAAKEAAEAIRERCDHPVLCQGEDTTS 561 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 LV +R R+ L G S +G+D+ G LS V I +I FP D P++ + Sbjct: 562 SLV----RRFTEDPRTCLFGTLSLWQGVDVPGPSLSLVVIDRIPFPRPDDPLLTARQRAV 617 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 + F + A+ L Q GRL+RS G V + D RL T YG L+ +LP F Sbjct: 618 DARGGNGFLSVAANHAALLLAQGAGRLLRSVDDRGVVAVLDPRLATAGYGGYLMASLPPF 677 >UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M767_9BACT Length = 639 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 181/685 (26%), Positives = 287/685 (41%), Gaps = 73/685 (10%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L +P+F R Q ++ +++ L +E R A EAPTG GKT + ++P + A+ + Sbjct: 11 LSMGMPEFEVREGQGELADAISQFLLSDE-RVFAAEAPTGTGKTYAVMVPAMLWAQRYGR 69 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 L+V T++V LQ+Q+ KD+P L+ + +L+ GRG Y C R +L + Sbjct: 70 RLLVLTSSVTLQEQLADKDIPALQAALGLELRCCLLKGRGHYACLRKALSLG-----DEG 124 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA-----IDDDLWRRLSTDK 191 L+F D + Q Q+ A W G + D+A + + R+ + Sbjct: 125 FLSFDGD----DGQLSQRIVA----------WSGETETGDLAELSLSANHPVLARIVSSH 170 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGH 251 +CL + C C + A R E++VVV+N+ A P P +L+ V DE H Sbjct: 171 QTCLGKLCPCRDRCFYRRAMRRASESDVVVSNYHKYFAYRLDGEEFPIPCDLI-VCDEAH 229 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA-IPERLNAHCEE 310 + AR +S+ W + L V + +E + LA + L A EE Sbjct: 230 AMSASARSVAAVSSR-RGEWDHV-LRHVPPAVKSLLETSEGDSEKALADVLTSLRAQAEE 287 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L+ L L +P + + + D VL A E+ G + L L Sbjct: 288 LF---------LYLQLPQPENSPNN----PYSDRVL------ASGGELTGGASRLAERVL 328 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 S D L + ALG+ + RL +S P +WA + E Sbjct: 329 SHPPAEDDEGNLP----AVQWALGLSDMAR---RLNQCCDTSRWP--EWAYWHDHES--- 376 Query: 431 LWFHCVGIRVSDQLERLL-WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 C + + + +L P I+ SAT+ F+ +GL D + Sbjct: 377 --LKCSPVTGAPMISEVLDTPDAPKIVAVSATMTVDGKFNFWAAETGLWP---DETRIMP 431 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 SPFN EQ + + + V + +A++ + + + + + Sbjct: 432 SPFNLSEQMSVHVVDLGVRVMDREYGERVAKVCRRYCVRNKGATLVLLSSRRLLESVAGY 491 Query: 550 FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 + + +L QGD+P L+ RK +GE VLVGL SF EG+D+ GD L+QV Sbjct: 492 LKGHASADGYCVLAQGDKPSAELLAQFRKN--DGEAKVLVGLASFREGVDVAGDALTQVI 549 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I +I F D P+V + +Y F LP A L Q +GRLIRS G VVI Sbjct: 550 IDRIPFSHPDDPIV--QARRALEGGKY-FTAVELPGAKMRLRQAMGRLIRSKTDHGRVVI 606 Query: 670 YDKRLLTKNYGKRLLDALPVFPIEQ 694 D R+ K K +D+LP P+++ Sbjct: 607 LDSRITQKQQWK-FIDSLPPAPLKR 630 >UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW Length = 846 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 171/729 (23%), Positives = 289/729 (39%), Gaps = 102/729 (13%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 L + + + R Q +++ A A +HL EA TG+GK+ +YLIP + +E + Sbjct: 141 TLSQLLKKYEYRQEQTELVE--ATIEAFNNNKHLISEAGTGIGKSFAYLIPALLWLKENK 198 Query: 77 KTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 +V+ST + LQ+QI SKD+P ++ I P +K+ GR YVC + + Sbjct: 199 TRIVISTNTINLQEQIISKDIPSIIGGIAPSVKYALVKGRNNYVCIKKV----KEGLNDH 254 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD-------DLWRRLS 188 D F EEQ D+D W L D +I D +LW + Sbjct: 255 DKFDF----------EEQ---INFFEDID--HW--LNITKDGSITDLGYKPKGELWEMVC 297 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL---- 244 D +C +R C Y +C F+ R+++ A++++ NH ++ A + A +LL Sbjct: 298 CDTDTCTHRKCEYLEDCYFYKMRKQLNAAQLLIVNHHILCADLSLYAETAGRYSLLPRYT 357 Query: 245 -LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 +++DE H+ + A ++ R K L + E Sbjct: 358 KVLIDEAHNFENSASSYFGDEGSKNG------------ILKALFYLSRIKKNKRLGVIES 405 Query: 304 LNAHCEELYELIAS--LNNILNLYMPAGQ-EAEHRFAMGELPDEVLEICQRLAKLTEML- 359 +N E LI + IL+L A + R + + E + C + + E L Sbjct: 406 INNMLNEKRALIEKHEYDEILDLINKAHDLTSRVRNVVEDKSKEFITYCHKNIQTKEGLG 465 Query: 360 ---RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE---------AQSKLWRLAS 407 R EL + + G + L ++L M + + + A K + Sbjct: 466 YKFRISPELVMTSHWQNEG---LKPLREMVLSMTSLVNICDKLYKKFFDIAIEKDFDYEE 522 Query: 408 LAQSSGAPVTK---------------------WA-TREEREGQLHLWFHCVGIRVSDQLE 445 +AQ S A + + W TR ++G L L +H + V+ L Sbjct: 523 IAQMSNAYLERLKRQLVSLNAAIDYKKDEYIRWVETRLTKKGNLILNWHLTPVTVAKNLN 582 Query: 446 RLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK--EKAGDRFVALDSPFNHCEQGKIVIP 503 L+ + + SATL SF+ G EK + L+SPFN+ + ++ I Sbjct: 583 DFLYSRFDTVAMYSATLTVSKSFNFFSNRLGFDFIEKNKKIEIYLESPFNYEDNARLYIA 642 Query: 504 RMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLV 563 + + D +++ +V +LF S ++ + ++ L Sbjct: 643 TDMPDVASDTFNDFTSKVLL----KVCDVTGGRAFILFTSFSSLMNVYENTSE---KLKS 695 Query: 564 QGDQPRYRLVELHRKRVAN----GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPID 619 + + +HR + + +VL G+ SF EG+D+ G L V I K+ F Sbjct: 696 KNINALAQTASIHRHTLLDMFKASSNNVLYGVDSFWEGVDVAGKNLEVVIIPKLPFAVPT 755 Query: 620 SPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 P+ +++ F +LP A Q GRLIRS G V + DKRL TK Y Sbjct: 756 DPISEGRYRYIEENGGNAFLDYALPFAVIKFKQGFGRLIRSKDDRGVVFVLDKRLYTKTY 815 Query: 680 GKRLLDALP 688 G + + +LP Sbjct: 816 GTQFIQSLP 824 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 178/701 (25%), Positives = 308/701 (43%), Gaps = 88/701 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R+ Q +M+ V + + + G+H IEA TG+GK+L Y +P I A++ + +V+ST Sbjct: 261 RSGQFEMMNLVFQAM--KSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNL 318 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEPTQQD-------LL 138 LQ Q++ KD+PLL K+ K A+ GR Y+ L TQ D LL Sbjct: 319 LQAQLFEKDVPLLTKLT-GFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVVTKLKLL 377 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 +L + T + E G+L W+ ++ HT W LS L + Sbjct: 378 VWLTETTTGDIDEVNLSSG---GEL---FWNRMK-HTG-------WF-LSEKHDPWLAHD 422 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMES--EAVLPDPKNLLLVLDEGHHLPDV 256 Y + ++ + A++V+ NHAL++ S E + PK V+DE HH D Sbjct: 423 FYKFN-------IKQAKNADLVIVNHALLLNDHFSGRETL---PKYAFAVIDEAHHFADS 472 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE------------RL 304 AR M + +++ F + + +E++ T +A PE +L Sbjct: 473 AR----MQGSFVLSYRKIKY--FLNQLGS-LEKYSLLTRLAMAFPEADSLYDLDIAAMKL 525 Query: 305 NAHCEELYELIASLNNIL--NLYMPAGQEAEHRFAMGE----LPDEVLEICQRLAKLTEM 358 + EE + L+ N NL E + A + ++VL + + K E Sbjct: 526 SDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDAWNDQVYYAAEKVLYLLKESEKNMET 585 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 L + N+L E + + ++ +L + Q+ + +L + +T Sbjct: 586 LLEQGKREENELGEAESAF-LEEMYAFLL---------DWQNMVKQLEQMLHKKSPILTI 635 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 + ++ + V + V L + + +I+TSATL F L++ GL+ Sbjct: 636 YLQADKNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLE 695 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE-EQHIAEMAAFFRKQVESKKHLGM 537 E+ + SPF++ E +++IP + P D E++ +E+A + R + K + M Sbjct: 696 EEQIME-KRIPSPFDYKENARVMIPD-DMPPIKDTPIERYTSELAKYIR-HIAVKTNGRM 752 Query: 538 LVLFASGRAMQRFLDYVTDLR----LMLLVQGDQ--PRYRLVELHRKRVANGERSVLVGL 591 LVLF + +Q+ ++ + + +LL QG RL K+ ++++L+G Sbjct: 753 LVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLT----KQFQMFDKAILLGT 808 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 SF EG+D+ G+ LS + I ++ F P+D P + K F+ SLP A Sbjct: 809 TSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQTYSLPEAVLRFK 868 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 Q GRLIR G V ++D R+ T +GK L+++P PI Sbjct: 869 QGFGRLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAPI 909 >UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NN01_GLOVI Length = 719 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 188/681 (27%), Positives = 293/681 (43%), Gaps = 98/681 (14%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P + R PQ M V + A E + EA TG GK+ S L+P I K +V+ Sbjct: 83 LPGYEVRQPQLDMARAVERGFA--ERIAVVAEAGTGTGKSFSALVPAIL----SGKRVVI 136 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTALASTEPTQQDLLA 139 STA +ALQ+Q KD+PLL+K +P ++F A GR YV R + + LLA Sbjct: 137 STATIALQEQYLYKDIPLLQKALP-VRFEARLVKGRSHYVSKRRWS---------ESLLA 186 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 L EQ L DL T + ++W + +DK CL C Sbjct: 187 PGITWL--REWYEQTESGDL-ADLPT------------SPPSEIWDDIRSDKDDCLREKC 231 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDEGHHLPDVAR 258 ++ C +F +RR + +A++++ NHAL++ S +LPD LLV+DE H + A Sbjct: 232 PHFDSCFYFESRRSLGQAQILITNHALLLIDRASHGQILPDFD--LLVIDEAHQFAEYAT 289 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP-ERLNAHCEELYELIAS 317 AL ++ L + ++ +QF P L I R A +E++ + Sbjct: 290 RALTLT---------LSNFGMGRTLSRIKKQF-----PNLGIALARAEAEANAFFEVLLT 335 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 EA P ++ A + +L+ L EL L SE Sbjct: 336 -------------EAHQTRRYNLDPAMADDLS---AAVVRLLQSLKELNLG--SEDNLET 377 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 ++ R+ R ++ L +E ++ LA+ V + R G ++ +C Sbjct: 378 NVARMRR--DRLVETLTGYEGNLRV-----LAEPGENWVNWVEYQTTRGGGTNVALNCTP 430 Query: 438 IRVSDQLERLLWRSIPH---IIVTSATLRSLNS--FSRLQEMSGLKEKAGDRFVALDSPF 492 + V+ L + W S P + SATL + + F + GL + + SPF Sbjct: 431 LDVAPPLGQ--WFSHPDGPTAVWMSATLSTAGADPFDFFRRQVGLPAGTAEERI-FASPF 487 Query: 493 NHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 ++ QG + +P +P N+ + +AA K V + VLF S + M++ Sbjct: 488 DYPSQGLLYLPTHLPDP---NDASYANAIAAEIEKLVNFSEGRA-FVLFTSLQQMKQVYA 543 Query: 553 YVTDLRLMLLVQGDQ--PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 + + +L+ Q + P+ RLVE R V N VL SF EG+ ++G LS V I Sbjct: 544 LL-EAKLLWPAQHQEQMPKRRLVEWFRT-VKN---PVLFATASFWEGVSVEGPQLSLVVI 598 Query: 611 HKIAFPPIDSPVVITEGEWLK--SLNRYP-FEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 +I F V E L S +R+ F+ +LP A L Q GRL+R+ G V Sbjct: 599 DRIPFQSPGDIVYDARCELLSRTSGDRWAWFDRLALPYAQLRLKQGAGRLVRTRTDKGIV 658 Query: 668 VIYDKRLLTKNYGKRLLDALP 688 I D R+ K YGK +L +LP Sbjct: 659 AILDPRMHRKAYGKTILKSLP 679 >UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_ACISJ Length = 688 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 185/676 (27%), Positives = 285/676 (42%), Gaps = 102/676 (15%) Query: 50 LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKF 109 L +EA TG+GKT +YL+P + + +++STA LQDQ+ ++DLPLL++ + Sbjct: 47 LVVEAGTGIGKTFAYLVPALL----SGERVLISTATKTLQDQLLTRDLPLLQQALALPLR 102 Query: 110 TAAF-GRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW 168 AA GR Y+C L E ++D DE ++ +R A+ D + Sbjct: 103 VAALKGRANYLC------LYRLEQARRDGEGH--DEAVAHDLACVERWAQSTRSGDLAEV 154 Query: 169 DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM 228 GL +++ WR++++ +CL C R+C + AR + Q A+V++ NH L Sbjct: 155 PGLDEYSAA------WRQVTSTVDNCLGSMCPRLRQCHVYRARHDAQAADVLIINHHLFF 208 Query: 229 AAMESEA-----VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLV 283 A + ++ +LPD ++V DE H L AEI A + L T + Sbjct: 209 ADLGAQGAGAAQLLPDTG--VVVFDEAHRL-----------AEIAAQF------LGTHVS 249 Query: 284 ATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE---HRFAMGE 340 + + Q + A R A + L + + + L L + G++A+ R A Sbjct: 250 TSQLLQLGQDVVAAGARHARGAADWQGLLQHLRQCAHALRLAVAPGEDADAAGSRIAWTG 309 Query: 341 LPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS 400 + E L+ L + L + + D+ LH +R + + E Sbjct: 310 VTPEALDPSAWDGALEGAVAALRAVLAALDGVAQHAPDLAHLH------SRTVALLE--- 360 Query: 401 KLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHI----- 455 R+ + A +W E G L + + V+ L R LW+ P Sbjct: 361 ---RVLHFCSEADAGTVRWV---ESAGALRMVE--TPLDVAGAL-RTLWKGKPPTQGAWD 411 Query: 456 --------------IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIV 501 I TSATL + GL+ G R + + SPF++ Q + Sbjct: 412 ESDEPPAASAPRSWIYTSATLGDGKDLRWFTDACGLE---GARTLQVPSPFDYARQAALY 468 Query: 502 IPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG--MLVLFASGRAMQRFLD-----YV 554 +P PS + H ++A + V LG LVL S RA+ D + Sbjct: 469 VPPALPLPS---DAGHSVQLARWVGDAV---ARLGGHTLVLTTSLRALAVIADELCRRFA 522 Query: 555 TDLRLMLLVQGDQPRYRLVELHRKRVANGER---SVLVGLQSFAEGLDLKGDLLSQVHIH 611 + +LVQG R R+VE R ++ R VLVG SF EG+D+ G+ L V I Sbjct: 523 PGGGIEVLVQGHASRSRMVERFRAQLDASGRPAGHVLVGAASFWEGIDVPGEALQMVVID 582 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 K+ FP P + L F +LPSA+ L Q GRLIR+ G +VI D Sbjct: 583 KLPFPAPGDPWEQAQARRLADQGGNVFRRHALPSAAVALKQGAGRLIRNENDHGILVIAD 642 Query: 672 KRLLTKNYGKRLLDAL 687 RLL K YGK LL AL Sbjct: 643 TRLLHKGYGKPLLRAL 658 >UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23_CATAD Length = 706 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 193/719 (26%), Positives = 291/719 (40%), Gaps = 131/719 (18%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M VA +L ++ HL ++A TG GK+L+YL+P +A K ++V+TA +A Sbjct: 32 RPGQIAMAKAVAASL--DDRVHLLVQAGTGTGKSLAYLVPALA----HHKRVIVATATLA 85 Query: 88 LQDQIYSKDLP-LLKKIIPDLKFTAAF----GRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ + DLP L I P +K AF GR YVC + A+ +P Q L Sbjct: 86 LQRQLVAHDLPRLAAAITPLIKREPAFALLKGRNNYVCLNKVEGGAAEDPGQDVLF---- 141 Query: 143 DELTPNNQEEQKRCAKLKGD-LDTYKW-----DGLRDHTDIAIDDDLWRRLSTDKASCLN 196 D L KL + L +W G RD + D W ++S CL Sbjct: 142 DPLA---------VGKLGAEVLRVREWVEETESGDRDDLSPGVSDRAWAQVSVSARECLG 192 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALV-MAAMESEA-VLPDPKNLLLVLDEGHHLP 254 C ++ +C A+ + A+VVV NHAL+ +AAM+ + VLP+ + +++DE H L Sbjct: 193 SKCQFFEDCFAEQAKELARSADVVVTNHALLAIAAMDGDVQVLPE--HDAVIVDEAHEL- 249 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 V R + E+T T +E+ +T + N L + Sbjct: 250 -VNRVTSAATGELT---------------KTAVERAHHRTDKFVKEATAANLAVATL-DF 292 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 +L N E RF G LP+E L LR + L +LS+ Sbjct: 293 TEALENT----------PEGRFQRG-LPEE-------LGMALVALRDASRSALTELSKNK 334 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSK-LWRLASLAQSSGAPVTKWATREEREGQLHLWF 433 G L M+ A A ++ + ++A W R E +G + Sbjct: 335 GGD---------LDMDGARKQARAATEAVHQVAERVLEGAEQDVVWLERSEFKGIKNSTL 385 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL---------------- 477 + + + L ++ P +++TSATL+ F+ + GL Sbjct: 386 KIAPLGIENLLRYKMFARTP-VVLTSATLKLGGDFTGVAGSVGLHGTERVELDFKPELPE 444 Query: 478 ------------KEKAGDRFV-----------ALD--SPFNHCEQGKIVIPRMRVEPSID 512 + G+ F+ ALD SPF++ +QG + + R P D Sbjct: 445 EIYDAAVKLLREGDSDGEEFLDTVQNLPQYWRALDVGSPFDYPKQGILYVARHLDPPGRD 504 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYR 571 +M A + L LF+S RA Q + + T + L +L QG+ Sbjct: 505 GIRDDQLDMLADLMDNAGGR----TLGLFSSMRAAQTAAEKLRTKIDLPILCQGED---S 557 Query: 572 LVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 L EL RK A + L G S +G+++ G L V I +I FP D PV E + Sbjct: 558 LAELLRK-FAEDPETCLFGTLSLWQGVNVPGASLQLVVIDRIPFPRPDDPVSAARTEAVG 616 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 F S A+ L Q GRLIR+ G V + D RL TK YG L ++P F Sbjct: 617 RSGGNGFMAVSASHAALLLAQGAGRLIRAIDDKGVVAVLDSRLATKPYGSFLRASMPAF 675 >UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C098_XYLCX Length = 696 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 181/686 (26%), Positives = 275/686 (40%), Gaps = 78/686 (11%) Query: 31 QRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQD 90 Q M +V + + +EGRHL ++A TG GK+L YL+P + A + ++VSTA +ALQ Sbjct: 40 QHAMALEVVEAI--DEGRHLLVQAGTGTGKSLGYLVPAVRHAVVADERVIVSTATLALQR 97 Query: 91 QIYSKDLPLLKKII-PDL----KFTAAFGRGRYVC-PRNLTALASTEPTQQDLLAFLDDE 144 Q+ ++DLPL+ + P L + G Y+C + + T DL E Sbjct: 98 QVITRDLPLVADAVAPQLPRPPRIALLKGWHNYLCLHKTGGGYPVDDATLFDLPGITPGE 157 Query: 145 LT-------PNNQEEQKRCAKLKGDLD-TYKW-----DGLRDHTDIAIDDDLWRRLSTDK 191 P + A L + + W G RD + D WR++S Sbjct: 158 SATEHPAEAPGRARREDGAASLADQVRRLHAWAHETDSGDRDELVPGVPDRAWRQVSVTS 217 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVLDEG 250 CL + C EC AR +EA+VVV NHA++ +A S VLP ++ ++V+DE Sbjct: 218 LECLGQRCPLLAECFPERARAAAREADVVVTNHAMLGIAVSGSPGVLP--EHGVVVVDEA 275 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H L D A A + +T ++ E L+A +E Sbjct: 276 HELADRATSAATVDLSLTT----IEHAARLARRHAAAET------------TALDAAAQE 319 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L LIA P G + R A+G + D + E+ R K G A D Sbjct: 320 LGSLIAQAPAG---SFPLGLPEDLRTAVGAVRDALRELLTR-TKPDPPQGGAAP----DG 371 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 K +++++ + +M + LW ++ P W R Sbjct: 372 GAKMAQSAVLQVYEVAERMA---AEDSSSDVLW----CSRPGDGPGAGWGDGVSR----- 419 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD----RFV 486 H + V+ + L I TSATL F + GL D R V Sbjct: 420 --LHAAPLHVAGLIRAGLLAETTGIF-TSATLALGGQFDAVAGSLGLGRTDDDGGRWRGV 476 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSID-NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 + SPF++ QG + + R P D + + E+A + + LG LF+S R Sbjct: 477 DVGSPFDYPRQGILYVARHLPAPGRDPATDAQLDEIAGLI--EAAGGRTLG---LFSSRR 531 Query: 546 AMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 A + + + L + +L QGD LV ++ A + L G S +G+D+ G Sbjct: 532 AANAVAEAMRERLDVPVLAQGDDQLPTLV----RQFAQDPATCLFGTISLWQGVDVPGPA 587 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 V I +I FP D PV ++ F S A+ L Q GRLIR+ Sbjct: 588 CQLVIIDRIPFPRPDDPVKAARARAVEKAGGNGFMAVSATHAALLLAQGAGRLIRATEDR 647 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVF 690 G V + D RL T YG L ++P F Sbjct: 648 GVVAVLDPRLATARYGTFLTRSMPNF 673 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 190/719 (26%), Positives = 287/719 (39%), Gaps = 104/719 (14%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 +F PR Q M V K + E +L +EA TGVGK+++YL+P AR + V+T Sbjct: 276 EFEPRIEQVAMAEAVRKAFSSSE--NLLVEAGTGVGKSMAYLVPAALTARANNIAVGVAT 333 Query: 84 ANVALQDQIYSKDLPLLKKII-------PDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 L DQ+ +LP L+K + P L + G Y C R + + E Q Sbjct: 334 KTNTLLDQLVYHELPALEKALRLADPDRPSLTYAPLKGFSHYPCLRKIGHIVE-EGAQTK 392 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD-LWRRLSTDKAS-C 194 L +EQ + L L + D + ID L RRL T A+ C Sbjct: 393 LF----------GNKEQTQAPSLAALLSFIEQTEYDDMDSLKIDYRVLPRRLITTTANDC 442 Query: 195 LNRNC-YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 L R C Y+ C +RR + A++VV NH+L+ + ++ L P V+DE H Sbjct: 443 LRRKCPYFGTSCFVHGSRRRAEAADIVVTNHSLLFCDLVADGGLLPPIR-YWVVDEAHGA 501 Query: 254 PDVARDA--LEMSAE-ITAPWYRLQLD-----LFT----KLVATCMEQ-----------F 290 AR A L +SAE IT R+ D +F ++V ME+ Sbjct: 502 EAEARRAFSLSLSAEDITRLANRVGADEASRNVFVRAERRVVVPGMEEGSSLFYALTGKA 561 Query: 291 RPKTIPPLAIPERLNAHCEEL-----------YELIAS-LNNILNLYMPAGQEAEHRFAM 338 R +AH ++L YE++ +N+ + Q + AM Sbjct: 562 RSAGKAYADAAREFSAHLKDLLFFDQNKKGKGYEIVELWINSDVRSSATFAQVESYGRAM 621 Query: 339 GELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA 398 E ++++ +CQ L E L G AE+ S D QMN A + + Sbjct: 622 TEAAEKLVRVCQELVGYLEELEGAAEIQREIASTAMELKD---------QMNAADIILDR 672 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 + + A AT ++ ++ + I V + + L+ + Sbjct: 673 APETYAYA-------------ATLSRKKDRVAEKLEALLINVGEAMNETLFERTHSTVFA 719 Query: 459 SATLRSLNSFSRLQEMSGLK--EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 SATL + F + GL E + + LDS ++ + + EP NE Sbjct: 720 SATLAVDDKFDAFESALGLNASEHSTCQMCKLDSSYDFDAHMTVYVASDMPEP---NEAA 776 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD------YVTDLRLMLLVQGDQPRY 570 ++A + V ++ ML LF + R M+R D V DLR++ G Sbjct: 777 YLAALQRLL-VDVHRAQNGSMLTLFTNRREMERCFDEVQPQLKVDDLRVVCQKWGVS--- 832 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFP-PIDSPVVITEGEW 629 V+ R E L L+SF EG D G L V I K+ F P D Sbjct: 833 --VKGLRDDFLADEHLSLFALKSFWEGFDAPGATLKGVVIPKLPFAKPTDPLSCERAARD 890 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 ++ RY LP+A Q GRLIR G +++ D+RLLTK+YGK L++LP Sbjct: 891 DQAWRRY-----VLPAAVLETKQAAGRLIRKADDTGVLILADRRLLTKSYGKAFLNSLP 944 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 205/733 (27%), Positives = 306/733 (41%), Gaps = 129/733 (17%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P + PR+ Q QM +V LA H IEA TGVGK+++YL+P +AR + T+ ++ Sbjct: 299 PGYEPRSEQVQMAVEVRDALA--TSTHRVIEAGTGVGKSIAYLVPMAELARRNKVTVGIA 356 Query: 83 TANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTE--PTQQDLLA 139 T + L DQ+ +LP L +++ L + A G Y C R L LA + T +D Sbjct: 357 TKSNNLADQLIYHELPRLAREMDGGLTYCALKGYDHYPCLRKLDRLARAQEIKTNRDPA- 415 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR-----LSTDKASC 194 D LT C GD D G+R WR L+T C Sbjct: 416 ---DTLTAIAVLYAFACQSPTGDFDGL---GIR-----------WRSVNKADLTTSSREC 458 Query: 195 LNRNC-YYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDEGHH 252 R C +Y +C +RR +VVV NH+L+ + +E +LP ++ V+DE H Sbjct: 459 ARRLCPFYPDKCMVHGSRRRAARVDVVVTNHSLLFRNVAAEGKILPPIRH--WVVDEAHS 516 Query: 253 LPDVARD--ALEMSA-EITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 + AR A+++SA E A + RL D L K LA+ + Sbjct: 517 IESEARRQWAIKVSADESRAVFERLGGDRAGAL---------GKIARDLALSD------- 560 Query: 310 ELYELIASLNNILNLYMPAGQEAEH-RFAMGELPDEVLEICQRLAKLTEMLRGLAELFL- 367 A+L + L + A + AM EL D V E+ + A +E A +++ Sbjct: 561 -----AATL--FMGLTVKASSSTQRASLAMAELFDAVRELAR--AARSEGGYDNANMWIG 611 Query: 368 NDLSEK---TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP----VTKWA 420 NDL + TG ++ R AL + +K LASL ++ VT A Sbjct: 612 NDLRDSMVWTGFEEVGRT---------ALDALDEATK--NLASLVETVAEEKPDLVTDVA 660 Query: 421 -----TREEREG--------------------QLHLWFHCVGIRVSDQLERLLWRSIPHI 455 RE R+G +L C+ D E L +P + Sbjct: 661 DGQRRMRELRDGLRLILDGADDRYVYSCQVNRRLKAGGECLTAERLDVGEALAEEWLPEV 720 Query: 456 ---IVTSATLRSLNSFSRLQEMSGLKE--KAGDRFVALDSPFNHCEQGKIVIPRMRVEPS 510 I SAT+ +SF Q GL + R V LDS ++ +V+ +P Sbjct: 721 HTAIFASATVTVSDSFDHFQHAVGLDRISSSSSRSVHLDSSYDFERNMAVVVASDMPDPR 780 Query: 511 IDNEEQHIAEMAAFFRKQVESKKHLGM----LVLFASGRAMQRFLDYVT-DLRLMLLVQG 565 + + +++ + HL M L LF + R M+ D V L L Sbjct: 781 --SRDAYLSALETLL-----VDVHLAMGGSTLTLFTNRRDMEELYDRVEPRLAQRGLALD 833 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 Q R ++ R R + E+S L L++F EG D GD L V I K+ F P+ Sbjct: 834 CQRRTTSAKILRDRFLSNEKSSLFALKAFWEGFDAAGDTLRCVVIPKLPFASPSDPLSCE 893 Query: 626 EGEWL-KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684 G ++ RY SLP A + Q GRLIR+ G +V+ D RL++K YGK+ L Sbjct: 894 RGAREDRAWARY-----SLPEAVLEVKQAAGRLIRTSTDAGVLVLADSRLVSKGYGKKFL 948 Query: 685 DALPVFPIEQPEV 697 ++LP P ++ EV Sbjct: 949 NSLPA-PHQRIEV 960 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 184/734 (25%), Positives = 299/734 (40%), Gaps = 108/734 (14%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 PR Q++M VA + G LA+EAPTG GK+L+YL+P I A + +V++TA Sbjct: 333 PREAQQEMARAVADVF--DHGGRLAVEAPTGTGKSLAYLLPAIGRASRPGQPVVIATATK 390 Query: 87 ALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 LQ Q+ + L + F G YVC R L +D L+ D E + Sbjct: 391 TLQGQLRVEATRLHDDGLLGAPFRQIQGVANYVCTREL----------EDALS--DRESS 438 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWR---RLSTDKASCLNRNCYYYR 203 P R T WD + D D R RL T+ C C + + Sbjct: 439 PLALAVALRAIAAS---PTGTWDDVTDDVIRRRDTRYARTRARLRTNAGGCDRTKCVWAQ 495 Query: 204 ECPFFVARREIQEAEVVVA-NHALVMAAMESEAVLPDPKNLL------LVLDEGHHLPDV 256 CP + +A VV+ NHAL+ + ++++ P ++L LV DE H L D Sbjct: 496 VCPMTQQLNGLDKAPGVVSVNHALIASWVKTDHA---PGDVLTESRADLVFDEAHGLED- 551 Query: 257 ARDALEMSAEITAPWYR----LQLDLFTKLVA---TCMEQFRPKTIPPLAIPER---LNA 306 +TA W L+LD+ ++ M R + + E + Sbjct: 552 ---------SLTAAWTERVDALELDILVNSLSPRSKLMRGIRSRAGTDTSFTEASQAITT 602 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 ++ A L + Y+ H +A G+ VL T ++ E Sbjct: 603 SSTQVRSSGAELAQAIETYL-------HEYA-GKSDSVVLR--------TGVVNSRPEFR 646 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRAL-GMFEAQSKLWRLASLAQSSGAPVTKWAT-REE 424 + + + +++L + + ++++L G+ S RL ++ A + T RE Sbjct: 647 VLRQAATAVRYWLIQLAKAVTALSQSLAGVNGTGSARRRLRGYSERLDAAIELLDTMREL 706 Query: 425 REGQLHLW---------------FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 +G HLW + + + V + E+L+ ++ SATL + F Sbjct: 707 PDG--HLWVYRLAAEEDDPAAWTYERIPVHVFPEFEQLVVDRTHSTVLCSATLTVQHRFD 764 Query: 470 RLQEMSGLK-----EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 + G+ + AG R + L SPF++ +Q +++ P NE + EMAA Sbjct: 765 FIASRLGIGIAADPDGAGFRGLRLPSPFDYSKQSLVILTNHLPVPIPVNEREFCEEMAAD 824 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYV-------TDLRLMLLVQGDQPRYRLVELHR 577 + S L LFA+ M+ V + LLVQGDQ R ++ + Sbjct: 825 -QTGFLSLSGGKTLTLFAARTRMEAVAAGVRIRAAELAQRGVELLVQGDQGRSQI----Q 879 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +R + +VL GL+S+ EG D G+ LS + I K +P D P++ + P Sbjct: 880 RRFRDEPGTVLYGLRSYWEGFDAPGETLSYLFIEKPPYPHPDDPLISARQRAIADRGDDP 939 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR-LLDALPVFPIEQPE 696 F LP + Q GRLIRS G ++ D+RL + +R +LD+LP PE Sbjct: 940 FLDYVLPMTAMQFAQGFGRLIRSETDRGAALVCDRRLHSPTQAQRVILDSLP-----NPE 994 Query: 697 VPEGIVKKKEKTKS 710 + E + T++ Sbjct: 995 IHEAADRDDAWTRA 1008 >UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG21_KOSOT Length = 835 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 176/738 (23%), Positives = 320/738 (43%), Gaps = 95/738 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L++ + + R Q ++A+++ G++G + IEA TG GK+L+YLIP + + + Sbjct: 150 LEDILEGYEYRQEQFMTALEIAESIEGKQG--IMIEAGTGTGKSLAYLIPSAYYSISKGE 207 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 +VVST LQDQ+ KD+ ++KK+ + +L+ GR RY C + Sbjct: 208 QIVVSTRTRMLQDQLARKDVAIVKKLPNLEELRVWTLKGRERYFCLKKY----------- 256 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 F + E + + + R +L G L G D ++ + ++ R + + CL Sbjct: 257 ----FEELEYAVGSGKSKNR-TELFGVLLWSIKTGSGDLDELHLKEENRNRFTATRFECL 311 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD-------------PKN 242 + C ++ CP++ +R Q A++V+ NH+L+ + E+ L D PK Sbjct: 312 RKLCPFFNRCPYYNSRDNAQNADIVITNHSLLFS--EAHIRLEDSREGEDEPIGMLLPKF 369 Query: 243 LLLVLDEGHHLPDVARDALEMS--AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 +L++DE H L +A+ + R ++ + + F + L Sbjct: 370 KVLIVDEAHELEMSLTEAMSFNLVPHEAVSTIRKAINCSKDALRSIRNHFERSFLEELW- 428 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP------DEVLEICQRL-A 353 RL E+ ++ L I+ Y + +H EL E+ I QR A Sbjct: 429 -GRLRKFTAEIEKI---LKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQRFRA 484 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 L ++LR + E+ + + L +L +++ E + +L L++ Sbjct: 485 VLIQLLRMVEEVAEEEETPV--------LEKLNMELKSVTS--ELDGLIRQLLGLSREED 534 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL-----RSLNSF 468 V + R HL I+ +DQL ++ +P + SATL RS + F Sbjct: 535 GRVV-YVRRTVTNNGNHLIITSAPIK-NDQLMAAIFPDVPVKVFISATLWVYSGRS-DGF 591 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR--MRVEPSIDNEEQHIAEMAAFFR 526 + + + GL E + L S F+ EQ K I + + +P N +++ + A Sbjct: 592 NYARRILGLNESF--HAIKLGSSFDFQEQLKFYIVKDMAKYQP---NNREYLNQGANLIS 646 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 + ++ K M VLF S + M + +++ L + +Q +P + + V N E S Sbjct: 647 EMLKIVKGSAM-VLFTSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHV-NSENS 704 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV------ITEGEWLKSLNRYPFEV 640 V+ G++SF EG+DL G+ L + I K+ F D P++ +++ LN+Y + Sbjct: 705 VIFGVRSFWEGIDLPGEHLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYY-- 762 Query: 641 QSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN--YGKRLLDALPVFPIEQPEVP 698 P Q +GRLIR+ G +V+ D R++ N Y ++LL +L P+V Sbjct: 763 ---PKMITAFRQGIGRLIRTRNDRGVLVVLDNRIVDGNKIYSRKLLRSL------SPDVK 813 Query: 699 EGIVKKKEKTKSPRRRRR 716 ++ R+ RR Sbjct: 814 INVIDGSRVISELRKLRR 831 >UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3T0_9PROT Length = 620 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 181/690 (26%), Positives = 279/690 (40%), Gaps = 118/690 (17%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L EQ+P + R Q ++ ++A + G L EA TG GKTL+YLIP + R K Sbjct: 18 LDEQLPGYGRREEQIKLAGEIAGCIV--SGSRLLAEAETGTGKTLAYLIPAL---RSSDK 72 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPT--- 133 L+ ST +LQDQ+ +DLP ++K + + A GR Y+CP+ L S+ Sbjct: 73 VLI-STHTRSLQDQLVHRDLPAVQKALGAKRRVALLKGRSNYLCPQRLKTHISSPQVELW 131 Query: 134 -QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 Q+ +L LD + Q+ GDL +D I + Sbjct: 132 AQKTMLKVLD--WSRKTQD---------GDLAALPFDPFAKGIGAMI--------TATAD 172 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM--AAMES---EAVLPDPKNLLLVL 247 C C + CP AR++ Q A++VV NH+L++ AA++S VLP + VL Sbjct: 173 QCAGSKCAEFEHCPLMKARQKAQGADIVVTNHSLLLADAALKSGDFGEVLPAFD--VYVL 230 Query: 248 DEGHHLPDVARD--ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 DE H LP +A ++++ W D+ +L A E K I Sbjct: 231 DEAHSLPQLAGQHFGIQLTRMNFIQWLN---DMQAELEAMGDEPALKKDI---------- 277 Query: 306 AHCEELYELIASLNNILNLYMPAGQEA--EHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 + +L ++ +G EA E M +L D E + L +L E LA Sbjct: 278 ---------VEQGRVVLEAWLESGLEALEEAWGDMLKLSDLRRERSEPLTRLAERAEQLA 328 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 E + +K G + +G E + +L R +G + K Sbjct: 329 EEIA--MVKKPG--------------DGFVGWSEGEGELTRYTVAPVETGPVLAK----- 367 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 HLW R I++++ TLR SF + GL + A + Sbjct: 368 ------HLWS----------------RQAAFILLSA-TLRVSGSFDYARNRLGLAD-AEE 403 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 F SPF++ +Q I +PR + +A M + + + ++ A Sbjct: 404 CFHP--SPFDYAQQAMIYLPRHMPD---SRSPGAVATMTDEIETLLRASRGRAFVLFTAW 458 Query: 544 GRAMQRFLDYVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 Q + L +L+QG+ R +++ R SVL G +SF EG+D+ G Sbjct: 459 SMLKQVAPELARRLPWDVLIQGESGSRDAILDAFRADT----HSVLCGTRSFWEGVDVPG 514 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + LS V I K+ F P + P++ + F LP A L Q GRLIRS Sbjct: 515 ESLSMVIIDKMPFAPPNDPLLQARIRRCEEQGGSGFRDIQLPEAIATLRQGAGRLIRSED 574 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 G + + D RL K YG+ + LP PI Sbjct: 575 DRGVMALLDSRLYHKAYGREAVHNLPPAPI 604 >UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepID=C7NJ65_KYTSD Length = 765 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 172/685 (25%), Positives = 271/685 (39%), Gaps = 97/685 (14%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 PR Q +M A+VA+ + E HL ++A TG GK+L+YL+P +A A K +VV+TA + Sbjct: 30 PREGQARMTAEVARAVNTSE--HLLVQAGTGTGKSLAYLVPAVAHAVATGKPVVVATATL 87 Query: 87 ALQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 ALQ QI +DLP + + + + + GR Y+C L L F Sbjct: 88 ALQAQIVDRDLPRVAEALRSEMGRPITYALVKGRNNYLCQHKL------------LGGFP 135 Query: 142 DDE---LTPNNQEEQKRCAKLKGDLDTYKW-----DGLRDHTDIAIDDDLWRRLSTDKAS 193 DD+ L Q + R A + + +W G RD + WR++S Sbjct: 136 DDDADALVSMGQVDADRSALGEEVVRLREWAQITESGDRDELVPGVSHRAWRQVSVSARE 195 Query: 194 CLNRN-CYYYRECPFFVARREIQEAEVVVANHA-LVMAAMESEAVLPDPKNLLLVLDEGH 251 C + C EC ++R ++ +V+V NHA L + A+E ++L P++ LLV+DE H Sbjct: 196 CFGASRCPVASECFVELSREAAKDVDVIVTNHAFLAIDAIEGRSML--PEHDLLVVDEAH 253 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 L D ++ ++ P T+ A A + L Sbjct: 254 ELVD-------------------------RVTGVATDELTPGTVAIAARKAGKFADTDRL 288 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 E +L+ L+ +P G + LPD + L L + RG++ + Sbjct: 289 EEAEEALSQALD-PLPEGT-------LRSLPD---ALADALVVLRDAARGVSTDLKPEKG 337 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 EK Q RA + E RL + W + R Q Sbjct: 338 EKADGPQ---------QTARA-AVDEVGDVAQRLLEERELD----VVWVAPDGRSNQRRN 383 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD-- 489 + V+ L ++ ++ ++ TL SF L GL + +D Sbjct: 384 VLRVAPMSVAMLLREKVFTERTVVMTSA-TLELGGSFDALAGTLGLLGAGAPSWNGVDVG 442 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEE-QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SPF++ +Q + P D + + E+ A R + LG LF+S RA + Sbjct: 443 SPFDYPKQAMAYVAGHLPAPGRDGTAPEQVDEIEALIRAA--GGRTLG---LFSSMRAAR 497 Query: 549 RFLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 D + + +L QG+ LV +R A R+ L G S +G+D+ G Sbjct: 498 AAADEMRERLGDEFEVLCQGEDQLPTLV----RRFAADARTCLFGTLSLWQGVDVPGSAC 553 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 V I +I FP D P+ + + F S A+ L Q GRL+R G Sbjct: 554 QLVLIDRIPFPRPDDPLSSARSQAIARNGGNGFMAVSATHAALRLAQGSGRLVRRADDRG 613 Query: 666 EVVIYDKRLLTKNYGKRLLDALPVF 690 V D R++T Y L +LP F Sbjct: 614 VVAFLDPRMVTARYAGFLQKSLPPF 638 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 176/716 (24%), Positives = 292/716 (40%), Gaps = 126/716 (17%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 + D+ PR Q+ + + + + +G +EAPTG GKTLSYLI A ++ L + Sbjct: 240 VDDYKPRHNQQDFASVMERNMY--KGGLCVLEAPTGSGKTLSYLITAANKAITGERVL-I 296 Query: 82 STANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 STA LQ+Q++++ +P + KI +L+ GR Y+C R L P Q LL+ Sbjct: 297 STATRTLQEQLWTEAIPQIAKIYNGELRPAILKGRDNYLCLRKFEELL-MHP--QTLLS- 352 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD--LWRRLSTDKASCLNRN 198 +E A + L T D + + + + LW +LS + C N Sbjct: 353 --------AEERDSFMALIPWVLSTETGD-INECNSFSQSRNRVLWSKLSCSASCCNGEN 403 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESE-AVLPDPKNLLLVLDEGHHLPDVA 257 ++ CP +A+R+ A +V+ NH+L ++ ++ + A+LP ++ +V DE H LP+++ Sbjct: 404 HSHHENCPALIAKRKAMNANMVLVNHSLFLSDLQLDFALLPSYEH--IVFDEAHRLPEIS 461 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA-IPERLNAHCEELYELIA 316 S + +A +E + +A I R+ A EL+E+ Sbjct: 462 NQVFGRSISFFG----------FRNIAKTLEPSKAGGDGLIAEIASRIPAEKPELHEICD 511 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK--------------LTEM---- 358 L+ L ++A HRF M +I ++LAK L E Sbjct: 512 KLSEALG----EAEKALHRFFM--------KIGKKLAKQKNGRSGFTYTNSILAEYEADP 559 Query: 359 ---------LRGLAELFLNDLSEKTGSHDIVR-LHRLILQMNRALGMFEAQSKLWRLASL 408 RG AE + + G IV L + +++ + FE +K R Sbjct: 560 ATFLEQYNNARGFAEKLVAATANMDGLKGIVSDLDSRMTEISHFISDFEFVTKAGR---- 615 Query: 409 AQSSGAPVTKWATREEREGQLH-LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS 467 W E H + H + + + +WR + + SAT S + Sbjct: 616 --------NDWVFYMEEPFNPHTIKLHALPLHSGN-----VWREKFYPWIKSATFTSA-T 661 Query: 468 FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 S +++ +K G ++ GK R+ E S NE + + +A F K Sbjct: 662 LSVQADLTYFLQKMG---------MDNLRLGKQPFVRVYTEQSDVNERRSVM-VAKFLPK 711 Query: 528 ---------------QVESKKHLGMLVLFASGRAMQRFLDYVTDL-----RLMLLVQGDQ 567 +V +VLF S M + + +L+L D Sbjct: 712 PSAPEFGDALNDTLLKVLPNVEENTMVLFTSVATMMKAQAALAPAFAERNKLLLCQHVDG 771 Query: 568 PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 LV + RK + L+G QS EG+D GD L + I K+ FP P+V Sbjct: 772 SLDGLVAMFRKERG----ACLLGCQSLWEGVDFPGDALKLLVITKLPFPNPSDPLVAGLT 827 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 +K+ N+ F+ +P A L Q +GRL+RS G+V+I D R++ + YGK Sbjct: 828 NEMKAANKNFFKDYFIPEAYIELRQGMGRLLRSDSDSGKVLILDNRVVLERYGKTF 883 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 176/741 (23%), Positives = 289/741 (39%), Gaps = 126/741 (17%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ D+ + G+E + L ++APTG+GKTL YL+PG A+E T VVST+ A Sbjct: 289 RKEQAKMMNDIYEHFNGDE-KMLLVQAPTGMGKTLGYLVPGAYQAQEGAST-VVSTSTTA 346 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 L DQI + +PLLKKI+P D + G G Y+ DL F Sbjct: 347 LLDQIVKESVPLLKKIVPFDFTYEVMKGSGHYI----------------DLEKFSHTLKI 390 Query: 147 PNNQEEQKRCAKLK----------GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 P N Q R +++ GD+D + R L++ + L+ Sbjct: 391 PMNN--QTRLLQMRILSWLWQTTTGDMDELRLTTYRAQ--------LFKMIKHAGVGSLS 440 Query: 197 RNCYYYRECPFFVARRE--IQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 +Y FV R+ ++ A+ V NH+ ++ E K L+LDE ++P Sbjct: 441 DKSAFY--GLDFVRLRDVRVKFADFVFTNHSYLVRHAEEIG----KKKANLILDEAQNIP 494 Query: 255 DVA----------------RDALEMSAE---------------ITAPWYRL---QLDLFT 280 VA D L +S E +T YR + + Sbjct: 495 SVAMEQGGSVFDFDLVKIYSDTLLVSMESRISFSFEGLIRQHFLTKNEYRTILRNIQIID 554 Query: 281 KLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE 340 V E+F + + ++ E E + S N +L L + FA+ Sbjct: 555 HSVPFIREKFWERYVRTKGGSKK------EFVETLLSPNKVLGL-------LKENFAI-- 599 Query: 341 LPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS 400 L+ + +L + + + F L T H+ V L L + E+ Sbjct: 600 ----FLKTTKAYTELLGQMTEMKQRFFRALDAGTLDHEAVNL--LTDWFIDCEKLVESME 653 Query: 401 KLWRLASLAQSSGAPVTK--WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 K W L ++ T W + HL + LE ++ HI++ Sbjct: 654 K-WHLLEFSELEKMDETTLVWMKHSPNNPKTHLRLCFSRLEAGKYLEERVYGYFKHIVMC 712 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPS--IDNEEQ 516 A L + + ++ L + + S F++ Q + V + S + E Sbjct: 713 GALLFTKKTEDYTKDQLRLDDDVLTK--RYQSEFDYAHQARAVFATDSPDLSSMLSKAEY 770 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQG--DQPRY 570 H A + K L LVLF S ++ + ++ + + +L QG P Sbjct: 771 HAYLTDAL--SDIIEKTSLQTLVLFNSLEDIEAVYNGLSIRGLNKKREILAQGVNGTPE- 827 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 +L ++ V +S+L+G SF EG+DL D L + I ++ F DS + + Sbjct: 828 ---KLKKRFVLTSSKSILLGAGSFWEGIDLPEDKLELLVITRLPFQSPDSLINKVRYRNV 884 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP-- 688 ++ PF SLP A+ Q GRLIR+ G + + D R++ K Y D LP Sbjct: 885 QAKGHNPFSAVSLPEAALKFRQGFGRLIRTKDDHGILAVLDSRIVNKRYAHEFTDTLPKD 944 Query: 689 --VFPIEQPEVPEGIVKKKEK 707 + +E ++PE I++ EK Sbjct: 945 LRIDRVEMKDIPE-IIRDTEK 964 >UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1E9_NATTJ Length = 636 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 141/288 (48%), Gaps = 40/288 (13%) Query: 15 YKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE 74 ++ LQ I F R Q M V K L ++G H +EA TG GK+L+YL+P + +A++ Sbjct: 12 WEDLQHHIDKFETREGQIDMSLGVLKAL--QDGGHFVVEAGTGTGKSLAYLLPAVQLAQD 69 Query: 75 EQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA-LASTEP 132 E + +V+STA +ALQ+Q+ KD+PL++KII L+ GR Y+C + T Sbjct: 70 EFR-MVISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQHFGQT-- 126 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 +F+ N +++ + + +T D ++ ++W ++ + Sbjct: 127 ------SFV-------NSIQERELIEWVNETET------GDRNELQTMPEIWEKVCSQSE 167 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-------SEAVLPDPKNLLL 245 SCL C +Y EC R+ + AE++V NH L + + S ++ PD + + Sbjct: 168 SCLAMRCQFYSECFVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEG--V 225 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 + DE HH+PD A +L + Y + LF ++ + ++F+ + Sbjct: 226 IFDEAHHIPDTATKSLGREVK-----YSRVIKLFKEVTSYLKQKFQAQ 268 >UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR3_BURPP Length = 755 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 118/241 (48%), Gaps = 17/241 (7%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 I TSATL F+ GL K R + L SPF++ QG + +PR +PS Sbjct: 499 IFTSATLSVRGDFTHYAAQMGLNAK---RSMTLPSPFDYPTQGLLYVPRNLPQPSSPMFT 555 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL------RLMLLVQGDQPR 569 + + A +E+ G+ +L + RA+ R + D LLVQGD R Sbjct: 556 DAVFDAAL---PAIEASGG-GVFMLCTTLRAVDRISAKLRDTIEARGWDYPLLVQGDASR 611 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L++ R ++LVG QSF EG+D++GD LS V I K+ F P D PV+ E Sbjct: 612 TELLDRFRSY----GNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVLSARLEA 667 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 L PF V LP A L Q GRLIR+ G ++I D RL+ K YG+R+ +LP Sbjct: 668 LTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIWQSLPP 727 Query: 690 F 690 F Sbjct: 728 F 728 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 26/214 (12%) Query: 50 LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKF 109 L +EA TG GKT +YL+P + + ++VST LQDQ++ +D+P ++ + Sbjct: 126 LIVEAGTGTGKTYAYLVPAMLWGGK----VIVSTGTKHLQDQLFQRDIPTVRDALAVPVS 181 Query: 110 TAAF-GRGRYVCPRNL--TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY 166 A GR Y+C L TA P++Q+ ++L D + R AK+ D Sbjct: 182 VAMLKGRANYLCHYYLQRTADNGRLPSRQET-SYLQDIV---------RFAKITRTGDKA 231 Query: 167 KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHAL 226 + + + + W +++ + +CL + C +Y++C ARRE Q+A++VV NH L Sbjct: 232 ELASVPETAAV------WSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVNHHL 285 Query: 227 VMA-AMESEAVLPD--PKNLLLVLDEGHHLPDVA 257 A M + + + P ++ DE H LP+ A Sbjct: 286 FFADIMLRDTGMAELLPTANTVIFDEAHQLPETA 319 >UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 RepID=C7I1U8_THIIN Length = 676 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 148/319 (46%), Gaps = 32/319 (10%) Query: 389 MNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLL 448 M+R + +A S Q+ P +WA G HL + ++ L+ Sbjct: 356 MDRCTALHQAFSSWQAAPDPDQTDAPPQVRWAD----VGSAHLRLQAAPLSIAPAFAALV 411 Query: 449 WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD------------RFVALDSPFNHCE 496 + I TSATL SF + GL + G R + + SPF++ E Sbjct: 412 AQRSQAWIFTSATLSVGGSFRHARAALGLTSEQGGCAPVEGGVAPRCRELRVASPFDYAE 471 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 QG++++P+ P+ + + +AA Q+ + G VL + RA + Sbjct: 472 QGRLLVPQDLPLPNQPGHSESVGALAA----QLATGNTGGTFVLTTTLRAAKII---AQT 524 Query: 557 LRLML-----LVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 LR +L L Q D+ + L+ R A+ ++VLVG QSF EG+DL GD L+ V I Sbjct: 525 LRALLPGRAVLEQFDESKAALL----ARFASTSQAVLVGSQSFWEGVDLPGDRLTLVIID 580 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 K+ F P D P+ + +++ R F S+P A+ +L Q GRLIR+ G +V+ D Sbjct: 581 KLPFAPPDDPLTAARLKQIEAEGRSGFADYSMPQAALSLQQGAGRLIRTESDRGVLVVCD 640 Query: 672 KRLLTKNYGKRLLDALPVF 690 +RL +G++LL +LP F Sbjct: 641 RRLTATGWGRQLLTSLPPF 659 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 30/246 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 LQE++P + R QR++ VA +A L EA TG GKTL+YL+P + Sbjct: 33 LQEELPQWSVREGQRELAMAVAGAIADRA--ILMAEAGTGTGKTLAYLVPALL----HGG 86 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQD 136 +++STA LQDQ+Y+KDLP ++ + T GR YVC L Q Sbjct: 87 RVIISTATRNLQDQLYNKDLPAARRALGAAVSTCVLKGRSNYVCLYRL----------QR 136 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 ++ + AK D GL +++ + + +TD +CL Sbjct: 137 AAEWVHGRHAHAQLRRITQFAKSDARGDLSALSGLEENSAL----NFLVTSTTD--NCLG 190 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEAV---LPDPKNLLLVLDEGH 251 +C Y+ C ARRE ++VV+ NH L A A+ E V LP L+LDE H Sbjct: 191 ADCPDYKACFVMKARREALASDVVIINHHLFFADLALRGEGVAELLPTADT--LILDEAH 248 Query: 252 HLPDVA 257 L ++ Sbjct: 249 QLAEIG 254 >UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borrelia RepID=B2S179_BORHD Length = 685 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 11/261 (4%) Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD-RFVALDSP 491 F GI + +L +++++ + II TSATL SFS +GL D L Sbjct: 402 FKTSGIYLGPELNKIMYKRVKRIIFTSATLMINQSFSYFINQTGLNLINQDIEMEKLPYS 461 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ--- 548 F + E+ + + +P + E+ + + + ++ V K G L+L S ++++ Sbjct: 462 FPYKEKSILTVTSDIEDP--NKAEEFLNQSIQYIKELVILNKG-GTLILLTSFKSLEYIG 518 Query: 549 -RFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 D++ + + L +QG+ P++ L+ +K + ++SVL+G+++F EG+D+KGD L+ Sbjct: 519 KNIKDFLRENNINLFIQGELPKHELINSFKK---SPKKSVLIGMKNFWEGIDIKGDKLTM 575 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 V I K+ F P++I + N F ++LP A Q GRLIR +G + Sbjct: 576 VIIPKLPFQTPSDPILIAKNALATKSNENFFTQETLPQAIMKFKQGFGRLIRDSKDYGII 635 Query: 668 VIYDKRLLTKNYGKRLLDALP 688 V +DKR+ K YGK L +LP Sbjct: 636 VCFDKRIFEKTYGKLFLQSLP 656 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 44/261 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 I F+ R Q +MI ++K E L IEAPTG GK+L+YLI I ++ Q+ ++ Sbjct: 14 NIKGFVKRNTQLRMIKKISKAFENE--NFLVIEAPTGTGKSLAYLIAAIDFIQKTQEKVI 71 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 +STA++ LQ+Q+ KD+ L+K+IP ++F G Y+C R L E +++LL Sbjct: 72 ISTASINLQEQLIKKDIETLEKLIPFKMRFGVIKGMRNYLCLRRL------EELEKNLLT 125 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 + N++ + + T G RD ID+ +W +S +C C Sbjct: 126 Y------TFNKKHLEALIYWTQNTKT----GDRDELHF-IDEQIWEEVSASPETCSGITC 174 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAM----------------------ESEAVL 237 +C F AR++I E ++++ NH L++ + E +L Sbjct: 175 PDENKCFFKKARKKILECDIIITNHHLLLNDLYIKNEILTEKENYENGSEKNYEEINLIL 234 Query: 238 PDPKNLLLVLDEGHHLPDVAR 258 P+ KN +++DE H+L + AR Sbjct: 235 PNVKN--IIIDEAHYLEEAAR 253 >UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium RepID=C6JKU1_FUSVA Length = 832 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 129/257 (50%), Gaps = 16/257 (6%) Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 +++ ++L++ L+ ++ II TSAT+ + FS +E GL+E D+ + SPF++ +Q Sbjct: 560 LKIDNELQKNLYINLKQIIFTSATIAIGSDFSYFKESIGLEEDTLDK--VIHSPFDYDKQ 617 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV--T 555 K+ IP PS N I+E F K + K VLF S A+ ++ Y+ Sbjct: 618 MKVYIPDDIPNPSDRNFVDEISE----FLKALLIKSKGKTFVLFTSYSALN-YVYYLLRD 672 Query: 556 DLR---LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 DL + L + G PR LV ++ NG VL G SF EG+D+KG LS V I K Sbjct: 673 DLEANGIELYIHGMAPRTHLVNMY----INGRNPVLFGTDSFWEGVDIKGKQLSSVIIVK 728 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + F PV E + + + F +P A Q +GRLIRS G V I D Sbjct: 729 LPFKVPSDPVTEAIIENITAQGKNSFIEYQIPEAVIKFKQGIGRLIRSKTDHGTVTILDN 788 Query: 673 RLLTKNYGKRLLDALPV 689 R++ K YGK ++++P Sbjct: 789 RVINKRYGKYFMESIPT 805 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 132/272 (48%), Gaps = 28/272 (10%) Query: 7 LKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +K I +++ L + F R Q M + L E + + +EA TG GKTL+ Sbjct: 123 VKIDITPYFEKTGLLSQTFKGFEYRDEQLHMAKHIENGLNDE--KKVIVEAGTGTGKTLA 180 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPR 122 YLIP + A + +K +V+ST + LQ+Q+ +KD+P+ KK++ D ++ GRG Y+C R Sbjct: 181 YLIPSVEWAIKNKKRVVISTNTINLQEQLLNKDIPIAKKVVQGDFRYILVKGRGNYLCNR 240 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 LA E ++ E N+Q+ Q + + G T K D + +D+ Sbjct: 241 KYFNLALGEN--------VNFEEFSNSQKTQFKEIIIWGK-KTEKGD--KSELPFEVDNS 289 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESE------ 234 +W ++ C C Y EC F +R E + A++++ NH + + A+ E Sbjct: 290 VWELFQSETDICAGAKCPYKGECFFLKSREEKKNADILITNHHMYFSDLAIRKEIGFNTE 349 Query: 235 -AVLPDPKNLLLVLDEGHHLPDVARDALEMSA 265 ++LP+ L+V DE H++ VARD A Sbjct: 350 YSILPEYG--LVVFDEAHNIEKVARDYFSYEA 379 >UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUZ3_SYNAS Length = 917 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 166/691 (24%), Positives = 286/691 (41%), Gaps = 89/691 (12%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA-IAREEQKTLVVST 83 F R Q VA+ L +G L +EA TG GKT YLIP + + R + +++ST Sbjct: 265 FKFRKTQLDYAFHVAEAL--NDGAVLTLEAGTGTGKTQGYLIPVMEYLHRNPEARIMIST 322 Query: 84 ANVALQDQIYSKDLP---LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 +LQDQI+ +++ L++ + G+ Y+C L + + LLA+ Sbjct: 323 YTKSLQDQIFQQEINRTVALERGYSKISIAVLKGKSNYLCAEKLNSAFEEDLKGASLLAW 382 Query: 141 LD--DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 L + + Q + + + G ++D L+ R D+ S Sbjct: 383 LYFVNLIFLYRQVDGETVGEKIGRY---------------LNDGLYLRQLQDEISAKTGC 427 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 + CP VA E + A +V+ NH + E + +N ++DE +H R Sbjct: 428 AGNHTLCPAQVALAEARSARLVITNHHKLALIDHDEELSGLFRNC--IVDEANHFEQAVR 485 Query: 259 DALEMSA---EITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 +A +S EIT D+ L + R + + ++ + E ++ + Sbjct: 486 NAFSLSVHSREIT--------DIIAYLESVLQRVSRKVSGEVEMMLQQCHETINEFHQTV 537 Query: 316 ASLNNILNL---YMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 ++L Y G+ E G PD +E RL ++LRG+ + L+ L + Sbjct: 538 HEFGSMLQTIHPYFAKGEILELPVCHGAYPDGDIEKMLRL--FADLLRGIGK-GLSFLKD 594 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 S + L R ++ A+ ++L+ A Q+ + T + W Sbjct: 595 PDASRVLKILPRSQERVRNAI------ARLYTEADNFQTMEKTIRTENTVAACQLFFKHW 648 Query: 433 FHCV-GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG--------- 482 V + VS ++ ++ +I TSATLR N F+ + G+ + G Sbjct: 649 VITVSAVDVSSLIKAHVYNKRDCVIYTSATLRHRNRFNDFCRIVGMDDATGCDSISPAGK 708 Query: 483 -------------DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 RFVA+ SP++ E K+ +P V +N++ + + + + Sbjct: 709 EDRTFFTDQDGREFRFVAIPSPYS-LESMKVFLPDGAVNGGYENKQAWLKAVVDLLPELI 767 Query: 530 ESKKHLG-MLVLFAS-----GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANG 583 +K+ G LVLF+S A+Q + + D +L+ Q +P L++ R + Sbjct: 768 --RKNRGRTLVLFSSYSDLEAVALQTGDEIIADGYPLLIQQMGRPTGNLIDEFR----SI 821 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFP-PIDSPVVITEGEWLKSLNRYPFEVQS 642 SVL G+++F G+D +GD L+QV I +I FP P D +G SL++ F + Sbjct: 822 RESVLFGVETFWYGVDFRGDTLTQVIITRIPFPYPFDPLQTARKG----SLSKEEFWSRY 877 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 A L Q +GRLIRS G +V D R Sbjct: 878 YYEAIIKLKQGMGRLIRSETDKGRLVFLDSR 908 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 167/718 (23%), Positives = 290/718 (40%), Gaps = 91/718 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 + E + PR Q+ M ++V + + +L +EA TGVGK+++YL+P A Sbjct: 346 VGEMYAGYEPRMEQKIMASEVLRAFS--TSTNLVVEAGTGVGKSMAYLLPSAMAALRNGI 403 Query: 78 TLVVSTANVALQDQIYSKDLPLL-----KKIIPDLKFTAAFGRGRYVCPRNLTALASTEP 132 + V+T AL DQI K+LPLL K DL++ A G Y C L + Sbjct: 404 PVGVATKTNALLDQIVYKELPLLHDALAAKGFGDLQYVALKGFRHYPC------LLRIDS 457 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR--LSTD 190 +D D ++ + + A + ++ ++D D + ID + R ++T+ Sbjct: 458 VMRD--GVHDVNVSGRDISQAPSLAGMLSFIEQTEYD---DIDGLKIDYRVLPRYAVTTE 512 Query: 191 KASCLNRNC-YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 CL R C +Y C +R++ + + +VV NH+L S+ L PK V+DE Sbjct: 513 SRDCLRRKCPFYGTYCFVHGSRKKAERSHIVVTNHSLFFRDASSDGSLL-PKAPFWVVDE 571 Query: 250 GHHLPDVARDALEMS---AEITAPWYRLQLDLFTKLVATCMEQFRPK---TIPP-----L 298 H AR AL +S +E+ RL D + +E+ P+ +P Sbjct: 572 AHGAEAEARRALSVSLDASEMLRLSRRLASDEGARNPFVRLERRAPECEAVLPEASTLFF 631 Query: 299 AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGEL--------PDEVLEICQ 350 + E+ ++ AS + + + + R+ + +L D +E+ + Sbjct: 632 GLTEKAKKRGKDFAVAAASFAHGMKDLSACATQQDRRYDVFDLWINDDVRACDAFVELVK 691 Query: 351 RLAKLTEMLRGLAEL---FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS 407 + ++ E LA + L E G D+ Q + A + +S L + Sbjct: 692 KASQFREAAERLASSGSELVAFLEETDGLGDV--------QRDIATIAIDVKSMLQACEA 743 Query: 408 LAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS 467 + ++ A + + + I V +L++ L+ I+ SATL + Sbjct: 744 IMETPDRNYVYSAHVSRKPEHVAERLEAMLIDVGQELDQTLYERTRSIVYASATLSVGHG 803 Query: 468 FSRLQEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 FS GL R L S ++ ++ + +P + ++ + Sbjct: 804 FSSFNRAMGLGGDGPARVNECLLGSSYDFENHMRVFVLNDIPDP---RDPAYLPILEGLL 860 Query: 526 RKQVESKKHLG----MLVLFASGRAMQRFLDYVT------DLRLMLLVQGDQPRYRLVEL 575 ++ H+ ML LF + R M+ D + LR++ G + L Sbjct: 861 -----ARAHIAQGGSMLTLFTNRREMETCFDDINPRMKEEGLRVVCQKWGVSTK----GL 911 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV-----VITEGEWL 630 + +AN E L L+SF EG D G L V I ++ F + P+ +G W Sbjct: 912 RDEFIAN-ETLSLFALKSFWEGFDAPGSTLKGVIIPRLPFSSPNDPLSKERAAREKGAWS 970 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 K LP+A +L Q GRLIRS G +++ D+RL+T YG+ L +LP Sbjct: 971 K---------YCLPAAVIDLKQAAGRLIRSSTDTGILILADRRLVTMGYGRTFLRSLP 1019 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 171/714 (23%), Positives = 296/714 (41%), Gaps = 81/714 (11%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 + + +P+F R Q +M+ + + L E + IEA TG+GKT YL+P I AR K Sbjct: 240 MTKALPNFEERPAQFKMMDTIWQAL--HEQKECVIEASTGIGKTAGYLLPAIVYARTVHK 297 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYV-CPRNLTALASTEPTQQ 135 + +ST LQ+Q+ ++LP ++KI+ + G Y+ R ++A + + Sbjct: 298 KIAISTYTSYLQEQLVEEELPKIEKILGTKVNICVLKGMQHYIDLDRFEQSMAYADESYD 357 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW----RRLSTDK 191 D + L + E G+ +++ L+ R++ DK Sbjct: 358 DTFSILQILVWLTKTET-----------------GVLSELNVSGGGQLFLEKIRKIPNDK 400 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLL---VLD 248 S + +Y + A + A+ +V NHA+V+ S+ V P + V+D Sbjct: 401 PS---KGFDFYEQ-----ALKNSAFADCIVTNHAMVL----SDLVRQTPIFTQIDGWVID 448 Query: 249 EGHHLPDVARDALEMSAEITAPWYRL-QLDLF--TKLVATCMEQFRPKTIPPLAIPERLN 305 E H A E+ T Y Q+ T L E + K + +RL+ Sbjct: 449 EAHQFIQAAMQQDEIVFSYTQWKYIFGQIGTMEDTGLYQLFCEAAKKKQRVSMQSLQRLD 508 Query: 306 AHCEELY----ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL--EICQRLAKLTEML 359 AH L E I + M G+ A + + + D L E +++KLT+ Sbjct: 509 AHFIRLQRAFDETIQRAAQSMQQQMK-GKRASSKCTLF-IEDVTLAKESFLQVSKLTQQW 566 Query: 360 RGLA----ELFLNDLSE--KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 LA + F N++ + K + + H I ++ + W L+ G Sbjct: 567 LDLATEAAQGFENNIEQLDKNDRYILSEWHYWIREVKIKIAE-------WEDIFLSSHDG 619 Query: 414 APVTKWATREERE--GQLHLWFHCVGIRVSDQLERLL--WRSIPHIIVTSATLRSLNSFS 469 + V W + R G LH++ V+ +E++L R I+ TS TL + Sbjct: 620 SSV--WLEFDVRSVPGSLHVFKKPAN--VTPIIEQVLAPLRKQASIVWTSGTLMVPGNER 675 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 + G+ + + L +P + K I + ++E++I +A + V Sbjct: 676 FVTRQLGISDSV--EVIKLQAPPAYYAGAKAFIVTDMPDIQHVSQEEYIEAVAHAITRTV 733 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGER 585 + VLF + +++ ++ + D L ML QG R+ L K Sbjct: 734 RMTEG-RCFVLFTAQDMLRKTVELIQDSELLDDYMLFAQGVTGGSRMRIL--KSFQKFSH 790 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 +VL G SF EG+D+ GD L+ V + ++ F + PV + L + R F SLP Sbjct: 791 AVLFGTNSFWEGVDVPGDALASVIVVRLPFSSPEEPVFKARAKHLTAQGRNSFTELSLPE 850 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 A Q GRLIRS G ++ D+R+ +K+YGK + ALP +++ ++PE Sbjct: 851 AIMRFKQGFGRLIRSSQDKGAFIVLDRRITSKSYGKEFIKALPPIDVKKLQLPE 904 >UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMW6_HALO1 Length = 650 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 15/252 (5%) Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 I V++QL + IVTSATL + +SF +++ G+ R + +DSPF+ +Q Sbjct: 395 IEVNEQLRTAFFDQTQSTIVTSATLTTGDSFDYVRKDLGVPSP---RELVVDSPFDFRKQ 451 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 ++P ++P A+ +Q L LF S R + + D Sbjct: 452 VLFIVPDCVIDP----RGPGFPTCVAWTVEQAVRLAGGRTLGLFTSYRNLDTAYARIADC 507 Query: 558 RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPP 617 +L QGD+PR +LV+ R+ V +SVL+G +SF G+D++G+ LS V I ++ FPP Sbjct: 508 GYRVLRQGDKPRTQLVDEFRRDV----KSVLLGTESFWAGVDVQGEALSCVVIDRLPFPP 563 Query: 618 IDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK 677 + PV+ + LK F SLP A Q GRLIR+ G VV+ D+RL T Sbjct: 564 PNDPVI----DALKERGGNSFLSASLPRAIIAFKQGFGRLIRASDDRGVVVVLDERLYTT 619 Query: 678 NYGKRLLDALPV 689 YG+ L +LP Sbjct: 620 FYGRAFLRSLPA 631 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 21/247 (8%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L ++ P + PR Q + V +A +G HL EAPTG GK+L+Y +P A Sbjct: 15 LADRFPAYAPRPGQISLARAVDAAIA--DGEHLLAEAPTGTGKSLAYAVPASYHAAHNGL 72 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +V++T+++ LQ+Q+ +KDLP L+ I+P ++F G+ Y+C L+ + ++D Sbjct: 73 RVVLATSSINLQEQLAAKDLPFLEGILPWPVRFALLKGKRNYLC------LSRLQEAKKD 126 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 F ++ E KR + D + G + D +W ST C Sbjct: 127 GFVF-----DISSDIEMKRSIQ---DWASETKTGDKSELSFEPPDRIWENYSTSAEECKG 178 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-SEAVLPD---PKNLLLVLDEGHH 252 R+C YY EC AR E ++A+++V+N+ L+ ++ EA D PK + V DEGH Sbjct: 179 RDCRYYSECFATKARAEAEKADIIVSNYHLLCVHLQLREATGQDLVLPKFDVAVCDEGHK 238 Query: 253 LPDVARD 259 L D+ARD Sbjct: 239 LADIARD 245 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 170/686 (24%), Positives = 290/686 (42%), Gaps = 99/686 (14%) Query: 48 RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL 107 +H+ +EAPTG+GK+L YL+P +A + + +VVSTA LQ+Q+ + +PLL +I+P Sbjct: 281 KHMIVEAPTGIGKSLGYLLP-MAYLGQTGRPVVVSTATTLLQEQLLDQTIPLLNQIVP-F 338 Query: 108 KFTAAFGRG--RYV-CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD 164 A +G Y+ R T L E ++Q L + GDLD Sbjct: 339 TVNAVLVKGSRHYLDLQRFATTLNVAETSKQTQLL--------KLRLLVWLTMTTTGDLD 390 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARRE--IQEAEVVVA 222 R ++ + + A ++ N +Y + F+ RR+ + +A+V++ Sbjct: 391 ELHLATYRA--------PYFQEIVHEGAVTVD-NPFYDDD---FIRRRDHRMAQAQVIIV 438 Query: 223 NHALVMAAMESEAVLPDPKNL---LLVLDEGHHLPDVA---RDALEMSAEITAPWYRLQL 276 NHA + SE L + L LV+DE HL + R A++ + +Q Sbjct: 439 NHAYL-----SEHALALGEQLQQPYLVIDEAQHLTESTLKQRRTQVKFAQLLNELHHIQR 493 Query: 277 DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE---ELYELIASL------NNILNLYMP 327 D+ ++ + + F T L + L+A +L L+ L N LN + Sbjct: 494 DINREIGPSLLRLFAADTQATLTLHRLLSASQTLETQLTTLVDHLFLRFLANKRLNNHNQ 553 Query: 328 AGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL---FLNDLSEKTGSHDIVRLHR 384 +E A+ E D I + ++L GL L + ++ T + Sbjct: 554 VIEELVSAQALTEEIDRSRTIDRATMATDDLLAGLNALRQRYDQQQAQFTSAE-----RY 608 Query: 385 LILQMNRALGMFEAQ-SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQ 443 L Q+N + +F+ Q +L + W T + L + Sbjct: 609 LFEQVNTRVHLFDDQMGQLLEILRQVVDQAPASLFWLTMNHVGDRTSLQLASGLLATEGF 668 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA---------LDSPFNH 494 L + L+ +++T ATL S SG + D+F + S F++ Sbjct: 669 LSQHLYAGFQPVLLTGATLFS----------SGRSQYVLDQFDLQREQTVTHRMRSSFDY 718 Query: 495 CEQGKIVI----PRM-RVEPS--IDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 +Q ++++ P + RV P+ + I+++A KQ L+LF S + Sbjct: 719 GKQAQLLMADSGPNLSRVAPADYVTYLSAAISQIAGAVNKQT--------LILFNSLSVI 770 Query: 548 -QRFLDYVTD---LRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 Q + VT R + QG R R+ KR A ++L+G SF EG+DL Sbjct: 771 EQVYQQLVTQPEFARRDIFAQGVSGSRERIT----KRFATSHGAILLGAASFWEGIDLPS 826 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + L + + ++ F D V L++ + PF +LP+A+ L Q +GRLIR+ Sbjct: 827 EQLELLIVTRLPFDSPDRVFVKANYARLEAAGKNPFYNAALPAATLKLRQGIGRLIRTPH 886 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALP 688 +G VVI D+RL+ + YG+ +L ALP Sbjct: 887 DYGAVVILDQRLVERQYGQSILRALP 912 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 170/698 (24%), Positives = 288/698 (41%), Gaps = 77/698 (11%) Query: 30 PQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQ 89 P +Q +A V T G+ +E TGVGK+L+YL+P ++ A + + V+T AL Sbjct: 327 PTQQEMA-VRVTSLQNSGQCGVLEVGTGVGKSLAYLLPSVSRAVQNDIQIGVATKTNALA 385 Query: 90 DQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDEL-TP 147 +Q+ K+LP L ++ P D + G Y P + + + +E T Sbjct: 386 EQLIKKELPQLHEVYPKDFSYLIVKGAEHY-------------PYLEGIDTLMREEFDTS 432 Query: 148 NNQEEQKRCAKLKGDLDTYK---WDGLRDHTDIAIDD--DLWRRLSTDK--ASCLNRNCY 200 ++ + +K+K ++ T + + D+ +D W + AS + + Sbjct: 433 QFKDIRFSSSKIKAEILTTAAIIYSACCELVDVDVDSLGIRWNMIPKGDFVASHRTGSNH 492 Query: 201 YYREC-PFFVA---RREIQEAEVVVANHALVMAAMESEAVL-PDPKNLLLVLDEGHHLPD 255 C P ++ R Q A +VV NHAL+ + VL P N ++DE H D Sbjct: 493 TLSTCAPHYMLSELRERTQHAHIVVTNHALLATDIALGHVLFPLVSNW--IVDEAHGFAD 550 Query: 256 VARD--ALEMSAEITAPWYR--------LQLDLFTKLVATCMEQFRPKTIPPLAI-PERL 304 RD A E+S ++ + + L D+F+ + + K I A+ +L Sbjct: 551 QVRDQWAQELSQDVFSDLFYTLGGIKTGLLGDMFSSSSNSEQKPLLQKLISKAAVLVAQL 610 Query: 305 NAHCEELYELIASLNNILNLYMPAG------QEAEHRFAMGELPDEVLEICQRLAKLTEM 358 E+L++ + ++ + G Q + + + L+ AK + Sbjct: 611 RVKNEDLFDCLNTVVLDDRYHFSRGAHTHMIQRVDSSIVSQDAWNAFLDKMSEFAKTFDT 670 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS--GAPV 416 L+ + +S + H V R+ ++ LG+ + L Q S G Sbjct: 671 LKAVLIQLCKAISNEASLHRDVDFKRVCAYVSSYLGV---------ITRLTQGSEDGFVY 721 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 T ++++ Q +L C+ I +L + ++ TSATL SF G Sbjct: 722 TVERVKQKKAYQTYLKEMCLDI--GKRLYTDWYLDAQSVLYTSATLSIEQSFEYFDHSVG 779 Query: 477 LKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 L DR L SPF++ +++P V P E++I ++ + + Sbjct: 780 LDRLNSDRVETKTLPSPFDYENHMGVIVPNNLVLP---QHEKYIQCLSNLLF-DIHVAMN 835 Query: 535 LGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 +L LF + R M+ + + + L LL Q P ++ R + S LV Sbjct: 836 GSVLTLFTNRREMEAVSSKLVPRLESHGLTLLEQ--LPTTSAQQIMRGFKKDTTAS-LVA 892 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 L+SF EG+D GD L V I ++ F P P+V E L + + LP A + Sbjct: 893 LKSFWEGIDAPGDTLRCVVIPRLPFVPPTDPIV----EALTERDSSTWWNYVLPRAITEV 948 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 Q GRLIR+ G V+I D R+L+K YGK +L ALP Sbjct: 949 RQAAGRLIRTQHDSGLVIIADTRVLSKAYGKHVLHALP 986 >UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EML2_ACIF5 Length = 641 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 134/271 (49%), Gaps = 16/271 (5%) Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W ++ R QLH + V+ L+R L + +I+TSATLR +SF+ + GL Sbjct: 367 WQEKKSRTVQLH----ATPLDVAAPLQRHLLEPVESVILTSATLRVGDSFASTERALGLT 422 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + + SPF++ Q + +P + EP + + + AA + + Sbjct: 423 AVS---TLTAASPFDYARQSLLYLPPLMPEPGHPSYTRACLDAAAPVIEASGGRT----F 475 Query: 539 VLFASGRAMQRF-LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 LF S RA+Q + L +LVQG PR RL++ R + N +VL+G SF EG Sbjct: 476 FLFTSHRALQEAAVSLPQRLSFPILVQGSMPRPRLLDRFRS-LGN---AVLLGAASFWEG 531 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +D++G+ LS V I K+ F P++ E ++ PF +P A L Q VGRL Sbjct: 532 VDVQGEALSCVIIDKLPFANPSDPILRARTEQCQAEGGEPFRELQIPQAVIALRQGVGRL 591 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 IRS G +++ D RL +K YG+ LD+LP Sbjct: 592 IRSEMDRGVLMLCDPRLRSKGYGRIFLDSLP 622 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 122/245 (49%), Gaps = 26/245 (10%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 AL +P F R Q+ M A VA TL +G IEA TG GKT +YL+P + R+ Sbjct: 20 ALARALPQFRAREQQQAMAAQVAHTL--RDGGVALIEAGTGTGKTFAYLLPAMLSGRK-- 75 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 ++VST + ALQDQI KD+PLL + + L+ + GR Y+C L S E Sbjct: 76 --VLVSTGSKALQDQILEKDIPLLLRAMGKPLRVSRLKGRANYLCRHRLQRF-SAEGVAP 132 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 L+A L R A G T + D + + T + D +W +++ + +C Sbjct: 133 ALVAPL------------ARVADWAGR--TREGD-VSELTSVPEDSPIWPLVTSTRDNCP 177 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPD--PKNLLLVLDEGHH 252 C Y C ARR+ QEAE++V NH L+ + + +A + D P+ +VLDE H Sbjct: 178 GSECPEYGRCHVIEARRQAQEAEILVVNHHLLFSDLALKANGMGDLLPRVDAMVLDEAHQ 237 Query: 253 LPDVA 257 + D+A Sbjct: 238 VLDLA 242 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 46/279 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 + P+F R+ Q M +VA + ++ L +EA TGVGK+ +YL+P I + + ++ Sbjct: 268 KFPNFEFRSGQMTMAEEVADAFSKQD--FLVVEAGTGVGKSFAYLVPAIDFSNRNKSKVI 325 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQDLL 138 VST LQ+Q++ KDLP LKKI+P L F A +GR Y+C R Q+LL Sbjct: 326 VSTNTKNLQEQLFFKDLPQLKKILP-LPFQAVLVKGRENYICERRW----------QELL 374 Query: 139 AFLDDELTPNNQEEQKR---CAKLKGDLDTYKWDGLRDHTDIAIDDD--------LWRRL 187 +EQ R G L+ W + D++ + LW ++ Sbjct: 375 ------------QEQTRGITSYDAYGLLNLLVWKEHTNTGDVSENSSFDKNRFGVLWHKI 422 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA-AMESEAVLPDPKNLLLV 246 +D+ C R C ++ C R+ I+ A +VVANH+L++A A + L + + LV Sbjct: 423 CSDRYLCGGRKCPLFQSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTLGEYQ--YLV 480 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVAT 285 +DE H+L A L T + L LF +LV T Sbjct: 481 IDEAHNLMSAASKNLGF----TLSYVDLN-SLFNQLVYT 514 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 127/258 (49%), Gaps = 15/258 (5%) Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK--EKAGDRFVALDSPFNHC 495 + V + L RLL+++IP II TSATL SF SGL + R ++SPF++ Sbjct: 684 VEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKFFLNQSGLSLVTEKNVRQSIVESPFDYD 743 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 +Q ++I E +++ A +Q+ + ++G + LF S + + D+++ Sbjct: 744 KQSLLLIGSFLPEY----KDKFFQSQALGCLEQILTTTNVGTMALFTSYKDLDAVYDHLS 799 Query: 556 DLRLML----LVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 D L QG R L++ +K + +VL+G SF EG+D++GD LS + + Sbjct: 800 DTLFHLNRPFFAQGKGVSRNSLLDEFKK----SKNAVLLGTSSFWEGVDIQGDSLSLLIL 855 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 +KI F P+V + L+ N+ F LP+A L Q GRLIRS G V+I Sbjct: 856 YKIPFQVPSEPLVEALIDKLERENKDSFMHLMLPNALLRLRQGFGRLIRSKTDRGVVLIM 915 Query: 671 DKRLLTKNYGKRLLDALP 688 D R+ K YG LP Sbjct: 916 DSRVSKKKYGIYFKQILP 933 >UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N856_9GAMM Length = 662 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 137/256 (53%), Gaps = 30/256 (11%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 A +KA AA AL + + D+ PR Q+++ VA L+ ++G LA EA TG GKT +Y Sbjct: 2 ADIKALFAA-DGALAQAVRDYQPRPGQQELAEAVADNLS-DDGILLA-EAGTGTGKTFAY 58 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRN 123 L+P +A ++ +VSTA LQ+QI++KDLPL++K++ A GR Y+C Sbjct: 59 LLPLLASGKKG----LVSTATRNLQEQIFTKDLPLVRKVLRSTARVALLKGRRNYLC--- 111 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 +LD E P+ EE+ ++ D L T+I D + Sbjct: 112 ----------HHHYHQYLDSE--PHTAEEKAWRRAIERFFDKTADGDLVALTEIPEDAPV 159 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA---VLP 238 R+++ +CL R+C ++ EC AR++ +EA+V + NH L++A A++SE +LP Sbjct: 160 LARITSTAENCLGRDCAFFEECFVQQARQKAKEADVTIINHHLLLADFALKSEGFAEILP 219 Query: 239 DPKNLLLVLDEGHHLP 254 D + V+DE HHLP Sbjct: 220 DIQA--FVIDEAHHLP 233 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 117/253 (46%), Gaps = 12/253 (4%) Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SATL F GL E R + L SPF+ Q + P +P N+ ++ Sbjct: 420 SATLAVNGKFDHFSRELGLSEY---RSIQLQSPFDFRHQALLYHPPGLPDP---NDARYN 473 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRK 578 + + +E + L LF S +A+ + D LLVQG + L+ R+ Sbjct: 474 DALISAILPVLERSRGRAFL-LFTSYKALHAAERALRDTDYHLLVQGRAGKNILLADFRR 532 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 ER+VL+ SF EG+D++GD L V I K+ F + PV L+ PF Sbjct: 533 H----ERAVLLATSSFWEGVDVRGDRLVCVVIDKLPFAAPNDPVTRARHRLLEDKGLSPF 588 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL-PVFPIEQPEV 697 +LP A L Q VGRLIR G +G +V+ D RL KNYG+ L++L P+ + EV Sbjct: 589 MHDTLPQAIITLKQGVGRLIRDSGDYGVLVLADPRLTQKNYGQTFLNSLPPMSKTRKIEV 648 Query: 698 PEGIVKKKEKTKS 710 + E TK+ Sbjct: 649 IDRFFAYHETTKT 661 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 170/730 (23%), Positives = 303/730 (41%), Gaps = 95/730 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ + +E + + +EA TG GKTL YL+P +A A K +V+STA Sbjct: 276 RPTQSKMMNSIYNNYTHDEPKSMIVEAGTGTGKTLGYLLP-LAYAAYPDKKIVISTATNL 334 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD-EL 145 LQ QI + + L ++P +L G Y+ DL F+ + Sbjct: 335 LQQQIAQRTMKQLNHLLPFELNGVVIKGNSHYL----------------DLAKFVHSLSI 378 Query: 146 TPNNQEEQKRCAKL--------KGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 ++ Q AK+ GDLD + R + + L Sbjct: 379 VEDSDYIQLIKAKILVWLLKTTSGDLDELNLNAQRS--------PYFAEIRHQGVKTLRE 430 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV- 256 + +Y + ++++ A V++ NHA ++A ++ + + LV+DE HL + Sbjct: 431 DNEFYNDDFLIRRQKQLHTANVIITNHAYLVA--HAQELGDGTRRPYLVVDEAQHLSESI 488 Query: 257 ---ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 +R L+ + TA + + LV+ E+ A+ + + E L + Sbjct: 489 LRRSRQTLDFQSIRTA------IHVLENLVSDNQERNLANIFEEHALGK---YNVELLRD 539 Query: 314 LIASLNNILNLYMPAGQEAEHRFAM--------GELPDEVLEICQRLAKLT-------EM 358 + SL+ + A Q+A +R M EL ++ L+ Q + LT ++ Sbjct: 540 DLRSLSEATD----AFQQALYRQFMLNVQGNNSNELIEQPLDNQQLFSLLTPSNKPIMQL 595 Query: 359 LRGLAE-----LFLNDLSEKTGSHDIVRLHRLILQM-NRALGMFEAQSKLWRLASLAQSS 412 + LA + L L E+ + L+ Q ++ + + +A +KL + + Sbjct: 596 EQALASVQFHFMALRHLFEQQADRWLFSDRYLMSQFQSQWMVLADADNKLHQFIETLEER 655 Query: 413 GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ 472 G W T ++ + + V+ L ++ + ATL + + + L Sbjct: 656 GEAAAFWLTVQQSAEHSSMRLSGGLLAVNHFLTENVYPYFAQPLFVGATLFTSSRSNYLY 715 Query: 473 EMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 E L++ DR + SPFN+ E+ ++++ + P+ N E++ +A Q+ Sbjct: 716 EQLDLEK---DRTLQKRFASPFNYAERAELLVAKDAPIPNQTNNEEYTRYLAQTIY-QLC 771 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTDLRLM----LLVQGDQPRYRLVELHRKRVANGERS 586 ++LF S +++ + + L +L QG R E K+ A+G S Sbjct: 772 KNNQCQTMILFNSLVTIEQVYSQLKETDLFDQRDILAQGITGRR---EKLLKQFASGTSS 828 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI---TEGEWLKSLNRYPFEVQSL 643 +L+G SF EG+DL L + I ++ P DSP I LK + PF +L Sbjct: 829 ILLGASSFWEGIDLPKSSLELLIITRL---PFDSPNEIMTRAHNNLLKREGKNPFYHSAL 885 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIV 702 P A+ L Q +GRL+R+ +G VI D R+ T+ YG +L LP PI++ E + Sbjct: 886 PKATMRLQQGIGRLLRTPNDFGVGVILDSRISTRRYGSSILKNLPKDLPIKELPTTELVE 945 Query: 703 KKKEKTKSPR 712 K+ K R Sbjct: 946 SAKKFLKKYR 955 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 162/699 (23%), Positives = 293/699 (41%), Gaps = 80/699 (11%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ + +E +++ +EA TGVGKTL YL P +A ++K +VVSTA Sbjct: 270 RPVQAKMMNSIYNNYTHDEPKNMIVEAGTGVGKTLGYLFPLSYVAYPDKK-IVVSTATNI 328 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYV-CPRNLTALASTEPTQQDLLAFLDDE 144 LQ QI + L K++P K + G Y+ R + +L+ E ++ L+ L + Sbjct: 329 LQQQIIDTSIAQLNKVLP-FKMNSVIIKGNAHYIDIARFVHSLSVIEDSK--LVQLLKAK 385 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 + + GDLD + + I R L+ N +Y+ + Sbjct: 386 ILV------WLLSTQSGDLDELNLNSQQSPYFTEIRHQGIRSLNP-------VNAFYHDD 432 Query: 205 CPFFVARRE--IQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA----- 257 F+ RRE + +A++++ NHA ++A ++ + + LV+DE HL + Sbjct: 433 ---FLVRREKRLHQADIIITNHAYLVA--HAQELGDGTRRPYLVIDEAQHLSESILKRSR 487 Query: 258 --------RDALE-MSAEITAPWYRLQLDLFTK--LVATCMEQFRPKTIPPLAIPERLNA 306 R A+ MS + R D+F + L + +E R A+ E ++ Sbjct: 488 RTFNFQKLRTAVHVMSGLVNNGNDRNLTDIFAEQALGSYNVELLRGDLN---AVEEAVDL 544 Query: 307 HCEELYE--LIASLNNILNLYMPAGQEAEHRFAMGELPDEV-LEICQRLAKLTEMLRGLA 363 + LY + ++ +N N + + ++ ++ V +++ Q L+ + L+ Sbjct: 545 FQQALYRQYMASATSNPDNELIEQPLRNDQVMSLLDISGPVMMKLEQALSSVQLHFSALS 604 Query: 364 ELFLND-----LSEKTGSHDIVRLHRLILQMNRALG-MFEAQSKLWRLASLAQSSGAPVT 417 LF + LS++ L+ Q L + EA L Q G Sbjct: 605 HLFSSQPDRWLLSDR----------YLMSQFQSQLAKLIEADQTLNEFNETLQQQGEAAA 654 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 W T + Q L + + L + ++ + ATL + L L Sbjct: 655 FWITIRQSSEQSALQLSGGLLEATHYLTKNVYPYFAQPLFVGATLFTSPRSPYLYHQLDL 714 Query: 478 KEKA--GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 + RF + P+N+ + K++I PS N +I ++ + ++ + Sbjct: 715 ERNNTLTRRFAS---PYNYKQNAKLLIAEDAPVPSAQNNSDYIKYLSDTIYQLTKNADYQ 771 Query: 536 GMLVLFASGRAMQRFLDYVTDLRLM----LLVQG-DQPRYRLVELHRKRVANGERSVLVG 590 M +LF S +++ + + L +L QG R +++ K+ + G+ S+L+G Sbjct: 772 TM-ILFNSLVMIEQIYSQLRETDLFDQRDILAQGITGNRDKIL----KQFSGGKNSILLG 826 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 SF EG+DL L + I ++ F D + + L+ + PF LP A+ L Sbjct: 827 ASSFWEGIDLPESALELLIITRLPFDSPDEIMNRAHNKLLQQQGKNPFYHSELPKATMRL 886 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 Q +GRL+R+ G V+ D RL T+ YGK +L +LP Sbjct: 887 RQGIGRLLRTEDDHGVAVVLDPRLQTRRYGKTILSSLPT 925 >UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=Yersinia pestis RepID=C4HUU2_YERPE Length = 464 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 34/250 (13%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 AL + I F PR QRQM A +++ + ++ L +EA TG GKT +YL P + R + Sbjct: 10 ALAQAIKGFNPRESQRQMAAAISEAIDAKQ--QLVVEAGTGTGKTFAYLAPAL---RADC 64 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF----GRGRYVCPRNL--TALAST 130 K +++ST + ALQDQ+YS+DLP++ + LK+ GR Y+C L +LA Sbjct: 65 K-VIISTGSKALQDQLYSRDLPMM---VTALKYKGKLALLKGRSNYLCLERLEQQSLAGG 120 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 + + L+ + L + E + GD+ T +A D +W +++ Sbjct: 121 DLASETLVDLV--RLRGWSAE------TVDGDISTCGQ--------VAEDSFVWPLVTST 164 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLLVL 247 +CL +C Y++C ARR +A+VVV NH L +A M ES P +++ Sbjct: 165 NDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIF 224 Query: 248 DEGHHLPDVA 257 DE H +PD+A Sbjct: 225 DEAHQIPDIA 234 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/99 (41%), Positives = 53/99 (53%) Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF EG+D++GD LS V I K+ F D P++ E + PF LP A L Q Sbjct: 350 SFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLKQ 409 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 VGRLIR G +VI D RL+ + YG L++LP P Sbjct: 410 GVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAP 448 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 162/709 (22%), Positives = 308/709 (43%), Gaps = 106/709 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R+ Q +M+ D+ L ++ + +A TG+GKTL YL+P A EE+ +V+STA Sbjct: 256 RSSQIKMMDDINNDLNEKKSKIYIYDAATGIGKTLGYLMPIAYKATEEK--VVISTATTT 313 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV----CPRNLTALASTEPT--QQDLLAF 140 LQ+Q+ KD+ +LK++IP +L G Y+ ++L+ S + T Q LL + Sbjct: 314 LQNQLVDKDISILKEVIPFNLNIVNLKGSQHYIDIDKFYQSLSIPQSKKATQIQMTLLVW 373 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 L + T GD++ +++ D ++ ++ LN+ Sbjct: 374 LMETST--------------GDMEELNL--------LSMQDTIFAQIEHHGIRGLNKKSA 411 Query: 201 YYRECPFFVARREI--QEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPD--- 255 +Y F+ R+EI + A +++ NHA +++ ++ + +L++DE HL D Sbjct: 412 FY--SVDFLKRQEILRRHANIIITNHAYLLSHVDKLG----GNDTVLIVDEAQHLNDNLL 465 Query: 256 -------------VARDAL--EMSAEITAPWYRL-QLDLFTKLVATCMEQFRP-KTIPPL 298 + D+L +M ++++ + L +++ TK A E RP +TI Sbjct: 466 KENRKTIDFDQIKIISDSLLVKMESQLSFSFRDLVEINFITK--AQYTELIRPIQTID-- 521 Query: 299 AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 E +N + L +++N ++Y+ + + M + L I +++ K + Sbjct: 522 --YEIMNLREIFMTYLNSNMNKASDVYVEVPIKPLNLIGMIKAN---LFIFKKIEKALKN 576 Query: 359 LRGLAELFLNDLSEK--TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 L+ L F S TG + + +LI + L + ++ K W L + Sbjct: 577 LKRLQNKFSQKYSMAIVTGRLGLDEI-QLINDYQKLLNLLLSEMKSWSYLDLNRLEDELE 635 Query: 417 TK--WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEM 474 T+ W T R+ HL + + + + L +++ +++ A L Sbjct: 636 TEFIWLTYPYRQENGHLRLNFIMLDGENFLNDKVYQKFSTVLLVGANL------------ 683 Query: 475 SGLKEKAGDRFVAL-----------DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 +KE G F L D+ F++ +Q + I + + + +++++I ++ Sbjct: 684 -AMKETRGYMFRQLDLNGQVKIKKYDNIFDYSKQTRAYILKDTPDITSISKKEYIEYLSH 742 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQGDQPRYRLVELHRKR 579 K + S M +LF S ++ + + + R +L QG VE +KR Sbjct: 743 DLEKILLSNNRQTM-ILFNSLEIIESVYPKLVKKIGSKR-EILAQGITGS---VEKIKKR 797 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 GE +L+G +F EG+DL + L V + ++ F D+ + L+ F Sbjct: 798 FMLGEGKILLGAGAFWEGIDLPENNLEMVIVTRLPFQSPDTVLNKARYRKLEKKGINSFY 857 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 +LP A+ L Q GRLIR+ G V+ D R+ KNYG++ + + P Sbjct: 858 NLALPEATLRLQQGWGRLIRTPKDKGIFVLLDSRIANKNYGEKFISSFP 906 >UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibacterium acnes RepID=D1YCN3_PROAC Length = 683 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 166/680 (24%), Positives = 275/680 (40%), Gaps = 100/680 (14%) Query: 49 HLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL----KKII 104 HL ++A TG GK+L YL P + E+ ++V+TA +ALQ Q+ KD+P + +K++ Sbjct: 48 HLLVQAGTGTGKSLGYLAPALVYCVEKGAQVIVATATLALQAQLAYKDIPTILDASEKVL 107 Query: 105 PDLKFTAAF-GRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRC--AKLKG 161 A GR ++C + ++ Q L+ D + ++ E + + L Sbjct: 108 SRRPRVAVLKGRNNHICLHKVRGSSTRTKGQDALVPGADLVVAADDGREVEAAPESTLGA 167 Query: 162 DLDTYK-W-------DGLRDHTDIAIDDDL-WRRLSTDKASCLN-RNCYYYRECPFFVAR 211 ++ + W GL D D L W ++S CL + C + EC AR Sbjct: 168 EVVMLREWAEKQVEESGLGDRDDAPAHTPLAWAQVSVPANECLGVQRCPFGSECLSEAAR 227 Query: 212 REIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPW 271 + + A++VV NHA M A+++ L+ G LP+ ++ + E+ + Sbjct: 228 EQARNADLVVTNHA--MLAIDA-------------LNGGRVLPEHDTVIIDEAHELVNRF 272 Query: 272 YRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQE 331 R + + T M R T + + + A +L S+ + L P Sbjct: 273 TRAASKDLSPAIVT-MTAKRAMTW----LDDDVGA---DLLNQADSMAHALEAIAPG--- 321 Query: 332 AEHRFAMGELPD-EVLEICQRLAKLTEMLRGLAELFLNDLSEKT-GSHDIVRLHRLILQM 389 R PD +V++ C +LR LA + ++ L S + V R+ Q Sbjct: 322 ---RVTT---PDAQVIQTCA-------VLRDLARVAVSQLDRNDEDSREPVDAERVQAQA 368 Query: 390 NRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQL-ERLL 448 M E R+ LA + W + E+ + H + V L E + Sbjct: 369 ----AMREVFETAERMVGLAAAD----VVWVSESEKG---YRSIHVAPLSVGGLLRENVF 417 Query: 449 WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA---GD-----------RFVALDSPFNH 494 +S I+TSATL +F + GL + GD R V + SPF++ Sbjct: 418 AQST--TILTSATLCIGGNFLAIARDVGLSPRGQIEGDAPEVFETQMGWRGVDVGSPFDY 475 Query: 495 CEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR----AMQRF 550 +QG + + R P D + + A + L LF+S R A + Sbjct: 476 SKQGILYVGRSLPRPGRDGIAPEVLDDLAELVWAAGGRT----LGLFSSQRNAVAAAEHM 531 Query: 551 LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 + D+ ++ +G L +L R R A R+ L G S +G+D+ GD V I Sbjct: 532 RSAMPDIPVLCQGEG-----HLADLTR-RFAADPRTCLFGTVSLWQGVDIPGDTCRLVVI 585 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 ++ FP D P++ + ++ F S A+ L Q GRLIR G V + Sbjct: 586 DRVPFPRPDDPLMAARSKAVEDAGGNGFMTVSAGHAALLLAQGAGRLIRRADDRGVVAVL 645 Query: 671 DKRLLTKNYGKRLLDALPVF 690 D RL+T YG L ++P F Sbjct: 646 DPRLVTARYGNFLRASMPPF 665 >UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB18_KANKD Length = 653 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 129/264 (48%), Gaps = 27/264 (10%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 MA A+L+ +A L + F+ R+ Q QM + + +E + IEA TG GK Sbjct: 1 MATLASLEELFSA-DGLLADYFEGFVRRSEQEQMAQSIESAI--KEEASICIEAGTGTGK 57 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYV 119 T +YL+P + E+ ++VST LQDQ+Y +DLP + K + K GR Y+ Sbjct: 58 TFAYLVPALKSWYEQDSKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYL 117 Query: 120 CPRNL-TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 C L +L S + ++ D L+ N+ K + GDL TD+A Sbjct: 118 CQYRLQQSLESGRFQSRSMV----DTLSRVNEWSVKTTS---GDLTQC--------TDLA 162 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE---- 234 +D LW +++ +CL C Y EC AR+ A+VVV NH L++A M + Sbjct: 163 DNDPLWSYVTSTNENCLGAECPDYAECFVAKARQRAVTADVVVVNHHLLLADMVLKEDGF 222 Query: 235 -AVLPDPKNLLLVLDEGHHLPDVA 257 +LPD ++V+DEGH L D+A Sbjct: 223 GELLPDAD--IVVVDEGHQLADIA 244 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 120/238 (50%), Gaps = 21/238 (8%) Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPS----ID 512 +T A+ + + F +E GL E R + L SPF++ Q + IPR +P I+ Sbjct: 410 ITQASSKGTSDFKHFKERLGLDEA---RELELPSPFDYASQAILHIPRGLADPRSKDFIN 466 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD--LRLMLLVQGDQPRY 570 N +Q + + VE+ G VLF S AM + + D L +L+QG++P+ Sbjct: 467 NWQQAVLPI-------VEANPG-GTFVLFTSYSAMHQVQELWKDKLLDKTVLMQGEKPKN 518 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 +L+E R+ +VL+ SF EG+D+KG LS V I K+ F D P++ + + + Sbjct: 519 QLIEDFREE----GNAVLLATSSFWEGVDVKGLALSCVIIDKLPFAAPDEPLIEAKIQAM 574 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 + + PF +P A L Q GRLIR G +V+ D RL+ YGKR L +LP Sbjct: 575 RKSGKNPFFDLQIPEAIIALKQGAGRLIRDQKDRGVLVLCDPRLIANAYGKRFLRSLP 632 >UniRef50_UPI0001911979 ATP-dependent DNA helicase DinG n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI0001911979 Length = 57 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 50/57 (87%), Positives = 53/57 (92%) Query: 274 LQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQ 330 +QLDLF+KLVATCMEQFRPKT PPLA PERLNAHCEE+YELIASLN ILNLYMPA Q Sbjct: 1 MQLDLFSKLVATCMEQFRPKTTPPLANPERLNAHCEEVYELIASLNAILNLYMPAAQ 57 >UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XY97_LEPCP Length = 658 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 122/257 (47%), Gaps = 29/257 (11%) Query: 445 ERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR 504 ER W I TSATL + S +G+++ R SPF++ ++ +P Sbjct: 401 ERRAW------IFTSATLGDDPALSWFTRSAGVEDAHTLR---AGSPFDYGRNARLFVPA 451 Query: 505 MRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLML--- 561 PS ++++AA + + + VL + RA+Q DLR L Sbjct: 452 RFPRPSEATHPAAVSQLAARCAQALGGR----CFVLTTTLRALQ---GIGADLRARLATL 504 Query: 562 ------LVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF 615 LVQG+ P+ L+ R R+VLVG SF EG+D+ G L V I K+ F Sbjct: 505 PDPIDVLVQGEAPKRALM----ARFLATPRAVLVGSHSFWEGIDVPGSALQCVLIDKLPF 560 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 PP + P+ L++ PF+ +P A+ L Q GRLIRS G +VI D RLL Sbjct: 561 PPPNDPLAEARCRSLEAQGGKPFDDYFIPEAAVALKQGAGRLIRSETDRGLLVICDTRLL 620 Query: 676 TKNYGKRLLDALPVFPI 692 T NYG+RL+ ALP P+ Sbjct: 621 TMNYGRRLMGALPPMPL 637 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 117/263 (44%), Gaps = 33/263 (12%) Query: 1 MALTAALKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTG 57 M +AL+ ++A + A L F PR Q ++ VA L EE L EA TG Sbjct: 1 MTPVSALREEVALAFAATGVLARTEKQFRPREVQTRLADAVAHAL--EERSVLVAEAGTG 58 Query: 58 VGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GR 115 VGKT +YL+P + +VSTA +LQDQ+Y +DLP L +++ L A GR Sbjct: 59 VGKTYAYLVPLLLSGLRA----LVSTATKSLQDQLYLRDLPRLVQLL-GLPVQVALLKGR 113 Query: 116 GRYVCPRNLTALASTE--PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRD 173 Y+C L T P + L + EQ GDL + + D Sbjct: 114 ASYLCLHRLDHARHTAELPDRHSLRVL--------ARVEQWSKTTRSGDLAELE---VLD 162 Query: 174 HTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-- 231 I +++++ +CL +C +R+C ARRE +A++VV NH L A M Sbjct: 163 ERSPVIP-----LVTSNRENCLGSDCPQFRQCHLVQARREAMQADIVVVNHHLFFADMAL 217 Query: 232 -ESEAVLPDPKNLLLVLDEGHHL 253 ++ P +V DE H L Sbjct: 218 RDTGMAELLPSVDAVVFDEAHQL 240 >UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG Length = 876 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 123/258 (47%), Gaps = 29/258 (11%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 +I A L +P + R Q +M A T A + R IEA TG GK+L+YL+P + Sbjct: 162 RIFAPAGVLAANLPGYEHREEQLRMA--FAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAV 219 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVCPRNLTAL 127 A ++ +VVST + LQ+Q+ KD+P L++ ++F A GR Y+C R L + Sbjct: 220 LWAIRNKERIVVSTNTINLQEQLIKKDIPFLQR-HAGVQFRAVLVKGRSNYLCLRKLAGV 278 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 S EP+ F DD P E + A +G R + W + Sbjct: 279 KS-EPS-----LFADD---PAAGELEAIIA-----WSEKTAEGCRSDLSFIPKPETWEEV 324 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--------AMESEAVLPD 239 + + C C Y C F+ ARR+ A+V+V NHAL+MA S A+LP Sbjct: 325 ACEADQCGRIKCPLYARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRSTAILPP 384 Query: 240 PKNLLLVLDEGHHLPDVA 257 + L+ +DEGHHL DVA Sbjct: 385 FERLM--VDEGHHLEDVA 400 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 130/283 (45%), Gaps = 27/283 (9%) Query: 425 REGQLHLWFHC------VGIR-------VSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 R+G++ WF + +R V+ L+R ++ + ++VTSATL +F L Sbjct: 577 RDGEVCRWFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYL 636 Query: 472 QEMSG--LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 + +G L ++ + L SPF++ Q + IP EP+ ++ + A R Sbjct: 637 EGRTGIALLDRGRVTELLLASPFDYERQAFVGIPADLPEPTSRGFQEALE--VALHRGLA 694 Query: 530 ESKKHLGMLVLFAS----GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGER 585 S H VLF S R R + + L + QG+ R+ L+ RK Sbjct: 695 ISNGH--AFVLFTSYDLLSRIHGRMAEALRRRGLTPMRQGEINRHHLLARFRKE----PN 748 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 +VL G SF EG+D++G L V I ++ F P++ + + PF ++P Sbjct: 749 AVLFGTDSFWEGVDVQGKALELVVITRLPFRVPTEPILEARADHIALRGGDPFMEYTVPQ 808 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 A Q GRLIRS G V+I D R+L+KNYG+ L +LP Sbjct: 809 AVIKFKQGFGRLIRSREDRGAVLILDSRVLSKNYGRFFLRSLP 851 >UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSI7_9GAMM Length = 631 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 120/234 (51%), Gaps = 12/234 (5%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 + TSATL F + GL E R + L+SPF++ I +P EPS + Sbjct: 392 VFTSATLAVGEQFHHFTQSLGLWEP---RTLRLESPFDYANNSIICLPENLPEPSAFHFT 448 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVE 574 + + A K + +LF S RA+ + + +++ L VQG+ PR +L++ Sbjct: 449 DAVVDAA----KPILQASRGRAFMLFTSYRALNHAAERLKSEVAFPLFVQGEAPRTQLLD 504 Query: 575 LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN 634 R+ +G+ VL+G SF EG+D+KG+ LS V I K+ F + PV+ + +K Sbjct: 505 DFRE---SGD-GVLLGTSSFWEGVDIKGEALSCVIIDKLPFAAPNDPVLQARMDAMKEQG 560 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 + PF LP+A L Q VGRLIR G VVI D RL TK YGKR ++LP Sbjct: 561 QNPFMDYQLPNAVIALKQGVGRLIRDVHDRGVVVICDVRLKTKFYGKRFTNSLP 614 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 42/252 (16%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + I + PR Q+QM V K + E+ L +EA TGVGKT +YLIP I ++ Sbjct: 13 LAKVIEGYAPRDAQQQMAEAVEKAI--EDIDVLVVEAGTGVGKTYAYLIPAILSGQK--- 67 Query: 78 TLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +++ST LQDQ+Y +DLP LLK + LK GR Y+C + Sbjct: 68 -VIISTGTRTLQDQLYHRDLPMLLKTLGVPLKRALLKGRSNYLCLHRMGIA--------- 117 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI------DDDLWRRLSTD 190 ++ ++E+ ++ A++K +W H D+A + + ++++ Sbjct: 118 -------DVHHRDREQSEQLAEIK------RWSRETIHGDMAEVTLLPENAPILPKVTST 164 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-----VLPDPKNLLL 245 +CL +C +Y +C ARRE QEA++VV NH L MA M + VLP Sbjct: 165 ADNCLGVDCEFYNDCHVVKARREAQEADLVVVNHHLFMADMALKQDGFGEVLPTANA--F 222 Query: 246 VLDEGHHLPDVA 257 + DE H LP+VA Sbjct: 223 IFDEAHQLPEVA 234 >UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=Corynebacterium jeikeium RepID=C8RVT0_CORJE Length = 609 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 15/236 (6%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 PR Q++M VA+ + E HLA++A TG GK+L+YLIP IA A + ++VSTA + Sbjct: 20 PRPGQQKMAKAVAEAIDKEH--HLAVQAGTGTGKSLAYLIPSIAAAMDSDYPVIVSTATI 77 Query: 87 ALQDQIYSKDLPLLKKII-PD----LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 ALQ Q+ +DLP L K + P+ L+F GRG YVC + + ++ + L Sbjct: 78 ALQRQLVERDLPRLAKALEPELPRPLEFAIQKGRGNYVCLNKVQNAQTESGVEEAEESLL 137 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN-CY 200 D + R + G+ + DG RD+ + D WR++S CL C Sbjct: 138 DPSQLSATGAQVARLHEWAGETE----DGDRDNLPQGVSDRAWRQVSVSSRECLGATRCP 193 Query: 201 YYRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVLDEGHHLPD 255 + +C AR +A+VVV NHAL+ + A+ VLP+ +++DE H L D Sbjct: 194 FGEQCFAERARAHAADADVVVTNHALLAIDALVDAPVLPEHDT--VIVDEAHELED 247 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 22/191 (11%) Query: 438 IRVSDQL-ERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + V+D L +RL R+ +I+TSATL F+ + GL + + +PF+ Sbjct: 419 LSVADLLRQRLFGRNT--VILTSATLALGGKFTSMLSCWGLPKST--PTLDAGTPFDART 474 Query: 497 QGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 G + + R P D + + E A + LG LF+S RA + D Sbjct: 475 HGILYVARHLPPPGRDRASDASVDETARLI--NAAGGRTLG---LFSSRRAAE---DMAE 526 Query: 556 DLRLM----LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 LR + +L+QG+ LVE RK + + L G +G+D+ G LS V I Sbjct: 527 QLRTVVPYEILLQGEDSMSTLVEKFRKN----QSACLFGTLGLWQGVDVPGKSLSLVIID 582 Query: 612 KIAFPPIDSPV 622 +I FP D P+ Sbjct: 583 RIPFPRPDDPL 593 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 136/262 (51%), Gaps = 22/262 (8%) Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 II TS TL+ N+ L + GL E F L +P+N+ E ++ +P V +I N Sbjct: 676 IIYTSGTLKFGNNKKYLPQRLGLTEVT---FKTLPTPYNYAENARVYVPEEAV--AIQNA 730 Query: 515 EQHIAEMAAFFRKQVE---SKKHLGMLVLFASGRAMQRFLDYVTDLRLM-----LLVQG- 565 + EM + +E +++ MLVLF S + V RL+ +L QG Sbjct: 731 SSY--EMGQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQP-RLLEKGQEVLAQGI 787 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 R +++ KR +NG+ +VL+G SF EG+DL G L + + ++ F P+V Sbjct: 788 SGSREKIL----KRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQA 843 Query: 626 EGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLD 685 + +L++ PF +++P A+ L Q +GRLIRS G ++I D+RL+T YGKRL+ Sbjct: 844 KYAYLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIK 903 Query: 686 ALPV-FPIEQPEVPEGIVKKKE 706 A P +++ +PE + + KE Sbjct: 904 AFPKGLSVKEAPMPEILEELKE 925 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 103/234 (44%), Gaps = 18/234 (7%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F RA Q +M+ V + L IEA TG GKTL YL+P +A E K +++ST Sbjct: 261 FAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSYLATPE-KPVIISTV 319 Query: 85 NVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 ++ LQ+Q+ KDLPL +I R+ +PT Q A Sbjct: 320 SIVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQCFKATLNQPTPQKQYALYQMG 379 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 + E + GDLD + L +H W+ ++ L++ Y Sbjct: 380 VLVWLLETE------TGDLDELQLTNL-NHL-------FWKEVTHRGLDFLSKKDELYEV 425 Query: 205 CPFFVARREIQEAEVVVANHA-LVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 +++ ++ V++ NHA L ++ + +LP+ L++DE HHLPD+A Sbjct: 426 DFLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLLPESP--WLIIDEAHHLPDIA 477 >UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax=Gammaproteobacteria RepID=Y387_HAEIN Length = 640 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 118/257 (45%), Gaps = 32/257 (12%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 A I + L + I F PRA Q +M V K + + L IEA TG GKT +YL P Sbjct: 8 ANIFSLNGELSQNIKGFRPRAEQLEMAYAVGKAIQNKS--SLVIEAGTGTGKTFAYLAPA 65 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF----GRGRYVCPRNL 124 + K ++ST + LQDQ++++DLP +KK L FT GR Y+C L Sbjct: 66 LVFG----KKTIISTGSKNLQDQLFNRDLPAIKKA---LNFTGKIALLKGRANYLCLERL 118 Query: 125 -TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 +A + +LA L NN + GD + ++A D + Sbjct: 119 DQVIAQGVLGDKSVLAELSKVRKWNNSTK-------TGDF--------TECIELAEDSPI 163 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDP 240 +L++ SCL +C Y EC AR++ A++VV NH L A M ES P Sbjct: 164 IPQLTSTAESCLGTDCPNYSECYVASARKKALNADLVVVNHHLFFADMAVKESGFGELIP 223 Query: 241 KNLLLVLDEGHHLPDVA 257 +++ DE H LPD+A Sbjct: 224 NAEVIIFDEAHQLPDIA 240 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 134/288 (46%), Gaps = 20/288 (6%) Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLE--RLLWRSIPHIIVTSAT 461 +L L++++ W R+ LH+ V + QLE W I TSAT Sbjct: 352 QLKRLSETNIVGYCYWYEGNGRQFGLHITPLTVADKFGAQLEAKEAAW------IFTSAT 405 Query: 462 LRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEM 521 L +F+ + G+ E A + L SPFN+ EQ + +PR P+ N+ + + Sbjct: 406 LEVGGTFNHFCQRLGI-ENATQKI--LYSPFNYPEQSLLCVPRYL--PNT-NQMNTLNSL 459 Query: 522 AAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRV 580 +E+ K VL S M+ +Y + L +L+QG+ + +L+E K Sbjct: 460 GEILLPVIEANKGR-CFVLCTSYSMMRGLAEYFREKSHLSILLQGETSKGKLLEQFIKET 518 Query: 581 ANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV 640 SVLV SF EG+D++GD LS V I K+ F D P++ E + PF Sbjct: 519 ----HSVLVATSSFWEGVDVRGDALSLVIIDKLPFTAPDEPLLKARIEDCRLQGGDPFND 574 Query: 641 QSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 +P A L Q VGRLIR G V+I D RL+ +NYG+ L +LP Sbjct: 575 IQIPEAVITLKQGVGRLIRDVTDRGVVIICDNRLVMRNYGETFLKSLP 622 >UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6_THECD Length = 844 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 18/235 (7%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M VA+ +A G HLA +A TG GK+L+YL+P I A T+VVSTA +A Sbjct: 31 RPGQVRMAEAVARAIA--TGEHLAAQAGTGTGKSLAYLVPAIRHAVAADTTVVVSTATIA 88 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ +DLP L + + L +F GRG Y+C + A EP +D F Sbjct: 89 LQRQLVDRDLPRLAEALRPLLGQEPRFAILKGRGNYLCLHRVHTGAPDEP--EDAALFDP 146 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYY 201 +L+ + + KR + G T G RD + + WR++S CL + C + Sbjct: 147 QQLSALGR-QVKRLHEWAGQTVT----GDRDELVPGVSEQAWRQVSVSARECLGAQRCPH 201 Query: 202 YRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVLDEGHHLPD 255 C AR E +A +VV NHAL+ + A+E VLP+ + ++++DE H L D Sbjct: 202 GESCFAEQARAEAGQAHIVVTNHALLAIDALEGRQVLPE--HDVVIVDEAHELVD 254 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 13/211 (6%) Query: 484 RFVALD--SPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLGMLVL 540 R+ ALD SPF+H + G + + R +P D E ++ E+A + + LG L Sbjct: 620 RWSALDAGSPFDHAKAGILYVARHLPQPGRDGLPEAYLTEIAELI--EAAGGRTLG---L 674 Query: 541 FASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 F+S RA ++ + + L LL QG+ LV KR A ER+ L G S +G+D Sbjct: 675 FSSMRAARQAAEELRGRLGHPLLCQGEDATSLLV----KRFAEEERTCLFGTLSLWQGVD 730 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 + G L V + +I FP D P+ + + F + A+ L Q GRL+R Sbjct: 731 VPGPSLQLVIMDRIPFPRPDDPIASARQRAVAARGGNGFMAVAATQAALLLAQGAGRLLR 790 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 S G V I D RL T YG L +LP F Sbjct: 791 SATDRGVVAILDPRLATARYGGFLRSSLPPF 821 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 37/253 (14%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P + RA Q +M V L +G L +EA TG GK+L+YL+P + A +T+VV Sbjct: 265 LPGYEFRAGQVRMAQAVTNVL--NQGGQLLVEAGTGTGKSLAYLLPAVLHAVARGETVVV 322 Query: 82 STANVALQDQIYSKDLPLLKKII-------PDLKFTAAF------GRGRYVCPRNLTALA 128 ST +ALQDQ+++KDLPLL++ + P L A F GR Y+C R Sbjct: 323 STDTLALQDQLFAKDLPLLRRALEAAAEHDPRLADAARFRATVLKGRSNYLCLRRW---- 378 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL-WRRL 187 FL ++ E AK+ L + G R ++ ++ L W ++ Sbjct: 379 -----------FLRQREPFTSRAEALLAAKITAWLAQTE-TGDRAELHLSNEEQLAWAQV 426 Query: 188 STDKASCLNRNCYYYR--ECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLL 244 + + +CL C ++R +C + AR + A +V+ NHAL+++ + +E+ VLP ++ Sbjct: 427 AESEGACLPSRCLFHRRNQCFLYRARATAEGAHIVIVNHALLLSDLLAESRVLPSYRH-- 484 Query: 245 LVLDEGHHLPDVA 257 L++DE HHL D A Sbjct: 485 LIIDEAHHLVDEA 497 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 24/256 (9%) Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 V+ L+ +L+ + +++TSATL SF +++ GL + D V ++SPF++ Sbjct: 700 VAPLLQEMLFSRVDTLVLTSATLTVDRSFDYIRQQLGLAD--ADELV-VESPFDYASSTL 756 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF-------ASGRAMQRFLD 552 + + EP ++ + E + + LVLF A+ RA++R L+ Sbjct: 757 LCLAEDMAEPGEPGYQRQVNEALLALLRVTRGRA----LVLFTSHSALQAAYRAIKRPLE 812 Query: 553 YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 L L + G PR +LVE + R A +V++G + EG+D+ G+ LS + I K Sbjct: 813 QEGILVLGQRLDGS-PR-QLVERLKARPA----TVVLGTNAVWEGVDVPGEALSVLVIAK 866 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + F PV E PF+ ++P A Q GRLIRS +G V+ D+ Sbjct: 867 LPFAVPSDPVFAARCESYSD----PFQEYAVPQAVLRFKQGFGRLIRSTRDYGVCVVLDR 922 Query: 673 RLLTKNYGKRLLDALP 688 R+ T+ YG+ + +LP Sbjct: 923 RVTTRRYGQLFVQSLP 938 >UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_COMTE Length = 699 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 134/285 (47%), Gaps = 52/285 (18%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 AQ+ A AL P F PR Q +M VA+ + EEG L +EA TGVGKT +YL+P Sbjct: 16 AQVFAQQGALSLAEPAFTPRPGQTRMALAVAQAI--EEGGVLVVEAGTGVGKTYAYLVPA 73 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTAL 127 + + ++VSTA ALQDQ++++DLP L+ + L+ GR Y+C L Sbjct: 74 LLSGQR----VLVSTATKALQDQLFARDLPRLVHGLGLPLRMARLKGRSSYLCTERL--- 126 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR- 186 E +Q A D ++ L+ D +W + D+A L R Sbjct: 127 ---ERVRQGRTAPQDPQV-------------LRAVADVERWARVTRTGDLAELTALDERS 170 Query: 187 -----LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLP 238 +S+ K +C+ +C +++ C AR++ EA+VVV NH L+ A + +S Sbjct: 171 PVMPLVSSTKDNCMGSDCPHWQGCHVNQARQQALEADVVVVNHHLLFADLDVRDSGMAHL 230 Query: 239 DPKNLLLVLDEGHHLPDV-----------------ARDALEMSAE 266 P ++V+DE H L D+ ARDAL M+ E Sbjct: 231 LPNTGVVVIDEAHRLNDIGVQFAGEALSSQQLVGYARDALRMTQE 275 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 11/247 (4%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 I TSATL + S E GL+ G + + ++SPF++ Q + +P+ Sbjct: 431 IFTSATLGNDAQLSWFVESCGLR---GAQVLQVESPFDYHRQAGVYVPQPFAAAGSAQHS 487 Query: 516 QHIAEMAAFFRKQVESKKHL---GMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRL 572 Q +A++ +++ + + + L A +++ L DL + LVQG+ P+ L Sbjct: 488 QQVAQLVLDAAQRIGGRTLVLTTTLKALHAISASLRTSLGLFADLDV--LVQGEAPKLAL 545 Query: 573 VE-LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 ++ G +VLV +F EG+DL GD+L V I K+ FPP D P+V L+ Sbjct: 546 IQRFMAAGAVAGRGAVLVASATFWEGVDLPGDMLQLVVIDKLPFPPPDDPLVEARSRLLE 605 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 S+ R F LP A+ L Q GRLIRS G +VI D RL+T YG L+ ALP Sbjct: 606 SVGRGAFHDYMLPEAALALKQGAGRLIRSEADRGVLVICDSRLMTMGYGAELMSALPPMR 665 Query: 692 I--EQPE 696 + QPE Sbjct: 666 VLGSQPE 672 >UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_9ACTO Length = 713 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 103/363 (28%), Positives = 156/363 (42%), Gaps = 56/363 (15%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P R Q+QM + +++A G HL ++A TG GK+L+YL P + + +VV Sbjct: 34 VPGGAARPGQQQMAEAIERSIA--SGEHLLVQAGTGTGKSLAYLAPALTV----DGPVVV 87 Query: 82 STANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQD 136 STA +ALQ Q+ DLP L + + F GR Y+C L + EP Sbjct: 88 STATLALQSQLVEHDLPRLADAVEPVLGRRPTFAVLKGRHHYLCLARLDSSVEDEPDD-- 145 Query: 137 LLAFLDDELTPNNQEE--------QKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 A D + N + K+ +L+ D G RD D +DD +WR +S Sbjct: 146 --ALFDAPHSGNGGTKWLGEAGRLGKQVQRLR-DWAEETATGDRDELDPGVDDQVWRSVS 202 Query: 189 TDKASCLNRN-CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 C+ + C + +EC +R +EA++VV NH+L+ M + + P + LLV+ Sbjct: 203 MPARECVGASRCPFGQECFAEASRARAREADIVVTNHSLLAVDMLAGRHI-VPPHRLLVV 261 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H L D A Q +L +L+ + RP P +A ERL Sbjct: 262 DEAHELADRVSSA-------------AQAELVPELIDRSTRRARPLLRPDVA--ERLTEA 306 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE-MLRGLAELF 366 + L +A PAG R G LP + E C L T L G+ ++ Sbjct: 307 GDALAVGLAE--------APAG-----RLTAG-LPPALREACTLLDSATRAALEGIGDVK 352 Query: 367 LND 369 +D Sbjct: 353 ADD 355 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 15/226 (6%) Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 + SPF++ QG + + PS+ E + + + L LF+S RA Sbjct: 498 VGSPFDYARQGILYVAAHLPRPSVSGLPGPAGEELLALVEALGGR----TLGLFSSRRAA 553 Query: 548 QRFLDYV---TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 Q+ + V TDL ++L QG++ LV +R S L G+ S +G+D+ GD Sbjct: 554 QQAAELVRARTDLPVLL--QGEEALPLLV----RRFREVRESCLFGVMSLWQGVDVPGDA 607 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 V I ++ FP D P+ + + F S+P A+ L Q VGRLIR+ G Sbjct: 608 CQLVVIDRLPFPRPDEPLAAARAAAVDAGGGSGFAAVSVPIAAVRLAQGVGRLIRATGDR 667 Query: 665 GEVVIYDKRLLT-KNYGKRLLDALPVF-PIEQPEVPEGIVKKKEKT 708 G V + D RL T + YG L +LP F +PEV G +++ K+ Sbjct: 668 GVVAVLDSRLETARGYGPFLRRSLPPFWYTTRPEVARGALERLAKS 713 >UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL9_BEUC1 Length = 679 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 33/262 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 RA Q +M VA ++G L ++A TG GK+L+YL+P I A + ++VSTA +A Sbjct: 44 RAGQHEMALAVAHAF--DDGVPLLVQAGTGTGKSLAYLVPAIVRAVTSDERIIVSTATLA 101 Query: 88 LQDQIYSKDLPLLKKI----IPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ QI +KDLPL + + +P A G YVC +T P + + F Sbjct: 102 LQRQILTKDLPLARGVLEASLPRPPAVALLKGWHNYVCRHKVT---GGYPAEDEPGLFSL 158 Query: 143 DELTPNNQEEQKRCAKLKGDLDTY--------KW-----DGLRDHTDIAIDDDLWRRLST 189 D + +R A++ G+ +T +W G RD + + WR++S Sbjct: 159 D----GGADHPRRSAEV-GEFETLGEEVVRLREWAEETTTGDRDDLVPGVGERAWRQVSV 213 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVLD 248 CL + C EC ARR + A+VVV NHA++ +AA S VLP+ LV+D Sbjct: 214 TAMECLGQKCPMLAECFPEAARRASRSADVVVTNHAMLGIAAGGSPGVLPEHDG--LVVD 271 Query: 249 EGHHLPDVARDALEMSAEITAP 270 E H L D R + + E++AP Sbjct: 272 EAHELAD--RVTAQATVELSAP 291 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 112/245 (45%), Gaps = 13/245 (5%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 ++TSATL SF+ + GL A R + SPF++ QG + R P D Sbjct: 433 VLTSATLELGGSFAPVASSLGLATGA-YRAERVASPFDYARQGIRYVARHLPRPGSDGPS 491 Query: 516 QH-IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLV 573 Q +AE+A Q + LG LF+S RA + + D L +L QG+ LV Sbjct: 492 QEMLAELAELV--QAAGGRTLG---LFSSRRAAEVAAQEIRDRTGLDVLCQGEDVLPTLV 546 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 +R A E + L G S +G+D+ GD V I +I FP D PV E + + Sbjct: 547 ----RRFAEEEATSLFGTLSLWQGVDVPGDSCRLVTIDRIPFPRPDDPVGAARMEVVAAR 602 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL-PVFPI 692 PF + A+ L Q GRL+R G V I D RL T YG+ L +L P++P Sbjct: 603 GGNPFMTVAATHAALLLAQGAGRLLRRTTDRGVVAILDSRLATARYGEFLSRSLPPMWPT 662 Query: 693 EQPEV 697 P V Sbjct: 663 TDPAV 667 >UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXW2_SYNWW Length = 681 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 24/250 (9%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 +++ +PD+ R Q + V+ L+ +E L EA TGVGKT +YL+P + + +E + Sbjct: 19 MEQLLPDYKFRQEQVNLTVAVSAALSDQE--FLLAEAGTGVGKTFAYLLPAVLWSLQENE 76 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVC-PRNLTALASTEPTQQ 135 +V++T ALQ Q+ +DLP +K++I D A GR ++C + + LA + Q+ Sbjct: 77 KVVIATRTKALQQQLIERDLPDVKRVIKADFTCAEAKGRENFLCWNKYINILAGKKRLQE 136 Query: 136 DLLAFLDDELTPNNQEE--QKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 FL L Q E ++ +LK L H DI L+ D+ S Sbjct: 137 GEFEFLQSVLPWAEQSETGDRKELRLKS--------ALMKHWDI---------LAADRKS 179 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 C C Y+ +C + +++++++V NHAL+++ ++ + L P+ L++DE H L Sbjct: 180 CRKDKCLYHEKCFRLKMIKRLEKSQIIVTNHALLLSDVQVDNRLL-PEYHYLIIDEAHSL 238 Query: 254 PDVARDALEM 263 A D L M Sbjct: 239 DREAFDKLSM 248 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 123/257 (47%), Gaps = 16/257 (6%) Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE-KAGDRFVAL--DSPFNHCE 496 ++ +L+ L+ + +++ SATL F GL + + +R L SPF++ + Sbjct: 413 IASELQNRLYHKLESLVMVSATLAVEERFDYFLNKFGLSQLQEEERLKTLLEKSPFDYKK 472 Query: 497 Q-GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD--- 552 Q G I++ M P+ D E E A Q+ L+LF S + ++ Sbjct: 473 QAGYILLDDM---PARD--EPDYQEKLAGILSQIIDITGGRTLILFTSRQQLKDIAGIIR 527 Query: 553 -YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 Y ++ LLVQ + + E +++ RSV++GL +F EG+DLKGDLL + I Sbjct: 528 PYCEQRQVKLLVQNEDGGF---ETLKEQYTAHPRSVIMGLDTFWEGIDLKGDLLKCLVII 584 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 K+ F D P ++ + LN+ F LP A L Q VGRLIR G +VI D Sbjct: 585 KLPFRSPDEPFCQAWEKYYQQLNQSGFSRFLLPDAVIRLKQGVGRLIRGENDRGAIVILD 644 Query: 672 KRLLTKNYGKRLLDALP 688 RL +Y K L++LP Sbjct: 645 ARLGKSSYSKVFLNSLP 661 >UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax=Parachlamydiaceae RepID=Q6MEU9_PARUW Length = 753 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 39/257 (15%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + F R Q+QM+ ++ + + IEA TG+GK+L+YLIP + A + Sbjct: 26 LANSLKGFEFRPQQQQMMTNIIEAYNNDSIA--LIEAGTGIGKSLAYLIPALIWAARFNE 83 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCPRNLTALASTEPTQQD 136 V+ST + LQ+Q+ SKD+P L + K G Y+C R L E Q Sbjct: 84 RTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKL------EDVQM- 136 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW-----DGLRDHTDIAIDDDLWRRLSTDK 191 E++ + EE + K++ W DG R A +W ++ + Sbjct: 137 -------EMSIVSSEEAQEIEKIEA------WRQQTVDGSRSSLSFAPTHSVWEKVGAEN 183 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA---------VLPDPKN 242 +C + C +Y++C FF ARR+ Q+A +++ NH L+ A + A +LP + Sbjct: 184 EACSHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPTYRR 243 Query: 243 LLLVLDEGHHLPDVARD 259 ++LDE HH+ D+A + Sbjct: 244 --IILDEAHHVEDIATE 258 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 22/260 (8%) Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK-----AGDRFVALDSPFNH 494 +S L ++ P +I+ SATL S F +++ GL +K + ++ DSPF++ Sbjct: 472 ISKSLAEFVFSKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYI-YDSPFDY 530 Query: 495 CEQGKIVIPRMRVEPSIDNEEQHIAEMAAF--FRKQVESKKHLGMLVLFASGRAMQRFLD 552 +Q + +P PS + AF K +++ + VLF S +Q+ + Sbjct: 531 HKQALLAVPTDMPPPSHPD-----FNWIAFENIWKAIQASRGQA-FVLFTSYSMLQQCAE 584 Query: 553 YVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 ++ + +L QG++ R L LH+ + +R++L G SF EG+D+ GD L V Sbjct: 585 KLSARMHEHAYVLFKQGEEARQTL--LHKFKTT--DRAILFGTDSFWEGVDVAGDALRCV 640 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I K+ F P++ E + PF S+P A Q GRLIR+ G +V Sbjct: 641 IIVKLPFRVPTEPLIQARTEAIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIV 700 Query: 669 IYDKRLLTKNYGKRLLDALP 688 D RL+TK YGK+ L++LP Sbjct: 701 CLDTRLVTKGYGKQFLNSLP 720 >UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 Tax=Gammaproteobacteria RepID=A1SX28_PSYIN Length = 662 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 124/277 (44%), Gaps = 23/277 (8%) Query: 426 EGQLHLWFHCVG---------IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 E WF C + V+ + + + I TSATL F E+ G Sbjct: 382 ESGFSYWFECTKQHFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLG 441 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 L+E + + L SPF++ +Q V+PR+ EP + E A + + K G Sbjct: 442 LQE---SQCLQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLA---PVIRASK--G 493 Query: 537 MLVLFASGRAMQRFL--DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 + AM L + L +L+QG++ + L++ N ++LV SF Sbjct: 494 RCFFLCTSHAMMNQLAAGFRQTLTFPVLLQGEKSKQALLD----EFINHGNALLVATSSF 549 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D++G +LS V I KI F + P++ E + + PF LP A Q V Sbjct: 550 WEGVDVRGQVLSCVIIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGV 609 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 GRLIR+ G +++ D RL+T+ YG L++LP P Sbjct: 610 GRLIRAEKDKGVLIVCDTRLVTRKYGNLFLNSLPCMP 646 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 27/249 (10%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI-AIAREE 75 AL +Q+P FI R Q +M AD A T A + ++L +EA TG GKT +YL P + + Sbjct: 33 ALSKQLPFFISRDAQIEM-AD-AVTQAITKKQNLVVEAETGTGKTFAYLAPALLTFDKAS 90 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF----GRGRYVCPRNLTALASTE 131 + +++ST + ALQ+Q++ KDLPLL + FT + GR Y+C L Sbjct: 91 SEKIIISTGSKALQEQLFLKDLPLL---MAATNFTGSVTVLKGRSNYLCNERLARFMLET 147 Query: 132 PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK 191 ++ L Q K+K T K L + D+A D + ++++ Sbjct: 148 KQREKAL--------------QIELIKIKNWSLTSKTGDLAEIKDLAEDALIIPSITSNN 193 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-SEAVLPD--PKNLLLVLD 248 +CL R C + +C AR++ ++++VV NH L A + E + P+ + + D Sbjct: 194 DNCLGRECPSFDDCFIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPEAGVYIFD 253 Query: 249 EGHHLPDVA 257 E H LPD+A Sbjct: 254 EAHQLPDIA 262 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 164/698 (23%), Positives = 289/698 (41%), Gaps = 68/698 (9%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRH----LAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 P R Q +M+ + A + G H L IEAPTG+GK+L Y +P +A QK Sbjct: 257 PHLESRIEQNKMMNMIYNNYASD-GHHPAKPLVIEAPTGIGKSLGYSLPFSYLA-SAQKP 314 Query: 79 LVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYV---CPRNLTALAS---- 129 +V+STA LQ Q+ ++ LPLL + +P K + G Y+ R+L +A Sbjct: 315 VVISTATTYLQFQLQNQTLPLLNQSLP-FKINSVILKGASHYIDLNKFRHLLFVADSSVQ 373 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 T + +L +L T GDLD H ++ +W + Sbjct: 374 TAFIKAQILVWLTMTTT--------------GDLDEL-------HLNVEQTPFVWT-IQH 411 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 L+ N +Y E ++ Q A+ ++ NH+ ++ + + P LL+ DE Sbjct: 412 SGVKWLDANSPFYDEDFLRYNLKKAQNADFIIVNHSYLLKNWQFFSGFPVKPYLLI--DE 469 Query: 250 GHHLPDVA-RDALEMSAEIT--APWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 + A R+ + +T + R++ D+ + + F ++ + + L+ Sbjct: 470 TQQFAETAIRNNQKQINPLTVMSAVNRVRGDIQEGHYKSARDAFSGNSVLNNS-ADDLDE 528 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFA--------MGELPDEVLEICQRLAKLTEM 358 ++ L+ L + L M A Q+ H+ A + +L + E + + +L + Sbjct: 529 SLNQIKSLLKQLTHRLYSQMIANQQL-HKNASFFVRLIPISDLKAIINENRETITRLQDK 587 Query: 359 LRGLAELFLNDLSEKTGSHDIV--RLHRLILQMNRALGMF-EAQSKLWRLASLAQSSGAP 415 + +L + SE S D R + I F E + L + +S+ Sbjct: 588 QSEVEDLLIRLNSEIDHSTDAFTNRDYSSIYDFYEDFNEFAEKLTFLLSTIDMDESAINQ 647 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 W T + + ++ D L ++ S T AT+ S + + Sbjct: 648 NVVWVTVNHVKDINSFTINQGILKTEDYLNHRIYASFEPPTFTGATIFSSRRSQFIFNLL 707 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKI-VIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 G+ KA L S F+ Q +I +I + E I N + ++ ++A K ++ Sbjct: 708 GIDRKAAS-VRRLQSDFDPKNQARIYLIDKQSREHFITNSDDYLQQVAQSIEKIYQASPR 766 Query: 535 LGMLVLFASGRAMQR---FL--DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLV 589 LVLF S +A+++ FL D T L+L + RL K+ + E ++L+ Sbjct: 767 -QTLVLFNSLKAIKKTHQFLSKDGFTATHLVLAQGVNGTAARL----SKQFIHNEPAILL 821 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 G +F EG+D LL + I ++ F + P +S + PF +LP A+ Sbjct: 822 GANTFWEGVDFPAHLLENLIIAQLPFDTPEDPYNHALYSVERSKGKNPFYSLALPKATLR 881 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 L Q +GRL+R+ +G + + D RL TK YG+ +L L Sbjct: 882 LRQGMGRLLRTKADYGTIFVLDPRLTTKRYGQTILTNL 919 >UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH Length = 651 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 147/329 (44%), Gaps = 27/329 (8%) Query: 374 TGSHD--IVRLHRLILQMNRALGMFEAQSKLWRLAS------LAQSSGAPVT-KWATREE 424 TG+ D + RL L++ ++ A + + R A+ LA P T +W Sbjct: 313 TGAMDSLVARLETLVMWLDTAADRGKGLEQCARRANTLRARLLAFMKPEPDTVRWVETFT 372 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHI-IVTSATLRSLNSFSRLQEMSGLKEKAGD 483 R LH V R +++ R+ P I SATL F GL++ Sbjct: 373 RAFALHATPLNVAERFGERM-----RAYPSAWIFASATLSVGGRFEHFTGRLGLEQA--- 424 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + LDSPF++ ++ +P +P+ N + E A V G +LF S Sbjct: 425 ETLMLDSPFDYSRNARLYLPANMPQPNAPNHTAAVVEAAL----PVIEANPGGTFMLFTS 480 Query: 544 GRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 RA++ + L LLVQG PR L L R R A +VL+G SF EG+D++G Sbjct: 481 HRALREAAQLLEGRLERELLVQGTAPRDEL--LARFRAAGD--AVLLGAHSFWEGVDVRG 536 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 LS V I K+ F D P++ + ++ PF LP A +L Q VGRLIR Sbjct: 537 RALSCVIIDKLPFAAPDDPLLEARLQAIRDAGGNPFMDYQLPQAVLSLKQGVGRLIRDVT 596 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 G +++ D R+ TK YG+ + +LP P Sbjct: 597 DRGVLMLCDPRIRTKAYGRLFISSLPPIP 625 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 123/258 (47%), Gaps = 48/258 (18%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L E + +F PRA Q+QM A V + L E + L +EA TGVGKT YL+P + R Sbjct: 15 LAETLTNFRPRAAQQQMAAAVERAL--EARQALVVEAGTGVGKTFGYLVPVLMDGRRT-- 70 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKI--------IPDLKFTAAFGRGRYVCPRNLTALAS 129 ++ST LQDQ++ KDLP ++ +P + GR Y+C L Sbjct: 71 --ILSTGTKNLQDQLFQKDLPFVRDALVGAGLGRVPRVALLK--GRSNYLCRHRLD---- 122 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAK-----LKGDLDTYKWDGLRDHTDIAIDDDLW 184 LA D L ++ R + +GD+ + + I D LW Sbjct: 123 --------LAREDGRLGAAQTDQLLRVVRWVSRTTRGDIG--------ELSGIPEDSPLW 166 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA---VLPD 239 ++++ +CL ++C Y +C ARRE QEA++VV NH L+MA ++ E +LP Sbjct: 167 PQVTSTPDNCLGQDCPEYEDCFVVRARREAQEADLVVINHHLLMADLTLKEEGFGEILPS 226 Query: 240 PKNLLLVLDEGHHLPDVA 257 VLDE H LPDVA Sbjct: 227 ADA--FVLDEAHQLPDVA 242 >UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0F4_9ACTO Length = 640 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 142/293 (48%), Gaps = 23/293 (7%) Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W T+ + + + +CV + VS + L+ S +++TSATL+ SF L G+ Sbjct: 359 WVTQRDEDPAV---LNCVPLDVSAPIAFNLF-SEKAVVLTSATLKLGGSFGPLASEVGVY 414 Query: 479 EKAGD-RFVALDSPFNHCEQGKIVIPRMRVEP--SIDNEEQHIAEMAAFFRKQVESKKHL 535 + V + SPF+ +QG + + P S +EEQ + R S Sbjct: 415 RVESELEMVDVGSPFDPAKQGILYVAAELPAPPRSGVSEEQ----LQTLLRLTEASGG-- 468 Query: 536 GMLVLFASGRAMQRFLDYV---TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 GML LF+S RA Q+ DY+ TDL ++L QG+ LV+ R+ ++ LVG Sbjct: 469 GMLGLFSSKRAAQQAADYLRESTDLPVLL--QGEDQLSNLVQEFRED----SQTCLVGTM 522 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 S +G+D+KG V + +I FP PV+ + + PF+V SL AS + Q Sbjct: 523 SLWQGIDIKGPNCRLVVMDRIPFPVPSDPVIEARNDEAARKGQNPFQVVSLSHASLLMAQ 582 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKK 704 GRL+RS G V + D RL TK YG + +LP ++P EV G +K+ Sbjct: 583 GAGRLLRSVDDQGMVAVLDSRLATKPYGMFIRKSLPQLWPTTSIEVAVGAMKR 635 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 11/229 (4%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 RA Q+QM+ VA LA E + I+A TG GK+ YL+P + ++ ++V+TA +A Sbjct: 23 RAGQQQMVRTVASALA--EDKIALIQAGTGTGKSFGYLVPVMQRVANTKERVIVATATLA 80 Query: 88 LQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPT--QQDLLAFLDDE 144 LQ QI KD P + + +P +K A G Y+C + + E DL+ F + Sbjct: 81 LQRQILEKDAPCVNEHLPKPVKVAALKGWNNYLCLHKVEGGYAEEYALFPSDLVDFA-PK 139 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 + +E R + DT G RD + D +WR++S CL C E Sbjct: 140 TSSATGKEIVRVREWAKQTDT----GDRDDLKPGVSDQVWRQVSVPSNECLGSTCPLRDE 195 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 C +AR EA VV+ NHA++ SE + + LV+DE H L Sbjct: 196 CFPALARERATEANVVITNHAVLGIHATSENKMCGEFD-ALVVDEAHDL 243 >UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad3 n=6 Tax=Legionella RepID=Q5ZU85_LEGPH Length = 666 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 137/270 (50%), Gaps = 18/270 (6%) Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490 L FH V++ +LL I TSATL + F + GL + + + L S Sbjct: 392 LVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASVFDSFCKPLGLDKV---QTLLLSS 448 Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG--MLVLFASGRAMQ 548 PF++ +Q + +PR +P ++ H E A K + + G LF S +A++ Sbjct: 449 PFDYQQQALLYLPRGIPDP----KDAHYYE--ALLEKALPVIEACGGRCFFLFTSHKAVK 502 Query: 549 RFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 +++ L+ LL+QGD+ + L+ R+ + N +VL+G +F EG+D+KG+ LS Sbjct: 503 LVAQMMSNTLKYPLLIQGDEAKPILLSRFRQ-LGN---AVLLGTSTFWEGVDVKGEALSC 558 Query: 608 VHIHKIAFP-PIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I K+ F P+D PV+ +LK F+ SLP+A L Q VGRLIR G Sbjct: 559 VIIDKLPFANPVD-PVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGI 617 Query: 667 VVIYDKRLLTKNYGKRLLDALPVFPIEQPE 696 ++I D RL + YG+ +L +LP P + E Sbjct: 618 LMIADPRLTGREYGRTILASLPGLPKTRDE 647 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 40/254 (15%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L IP F+ RAPQ + +A + + L EA TG GKT +YL+P + K Sbjct: 35 LSTAIPGFVARAPQADLAVAIANAIV--QRSILVAEAGTGTGKTFAYLLPCLLSG----K 88 Query: 78 TLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 ++STA LQDQ++ KDLP L++ + ++ GR Y+C + A Sbjct: 89 KALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAE------- 141 Query: 137 LLAFLDDELTPNNQEEQKRCAK----LKGDLDTYKWDGLRDHT-DIAIDDDLWRRLSTDK 191 Q + +CA ++ L + +G+R +I D +W +++ Sbjct: 142 -----------EGQFQSPQCAHEILHVRDKLSQMQ-EGVRSELPEINEDSSVWHYVTSTT 189 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME------SEAVLPDPKNLLL 245 +CL C + C AR+ EA++VV NH L A + SE + P ++ Sbjct: 190 DNCLGAECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELL---PGVDVV 246 Query: 246 VLDEGHHLPDVARD 259 V DE H L D+A + Sbjct: 247 VFDEAHQLADIASN 260 >UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB00_9BURK Length = 667 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 117/242 (48%), Gaps = 18/242 (7%) Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 TSATL + + +GL G + ++SPFN+ Q + +P PS N Sbjct: 414 TSATLGPGSDLAWFVNSAGLH---GANVLKVESPFNYEHQAALYVPGAIPAPSHPNHGTR 470 Query: 518 IAEMAAFFRKQVESKKHLG--MLVLFASGRAMQRFLDYVTDL-----RLMLLVQGDQPRY 570 +A +AA E + LG +VL + RAM+ + + L + +LVQG+ + Sbjct: 471 VAALAA------EGAEILGGRTMVLTTTLRAMRLIGETIRKLLPPHLDMAVLVQGESSKR 524 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 L+E ++R G VLV SF EG+D+ G L + I KI F P D P++ + + Sbjct: 525 ELLERFQQR--EGLGCVLVASASFWEGVDIPGRSLLLLLIDKIPFAPPDDPLLQARCKQV 582 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 F LP A+ L Q VGRLIR G +V+ D RL + YG++LL ALPV Sbjct: 583 DEAGGSSFNEVQLPMAAVALRQGVGRLIRRESDRGVLVVCDVRLRSMGYGRKLLSALPVM 642 Query: 691 PI 692 I Sbjct: 643 RI 644 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 129/286 (45%), Gaps = 45/286 (15%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + +++PR Q+ M A VA + ++G L +EA TGVGKT +YL+P + QK Sbjct: 19 LAGAVAEYLPRKGQQDMAAAVAGNI--QDGGVLVVEAGTGVGKTFAYLVPALL---SGQK 73 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVC------PRNLTALAS 129 L +STA ALQDQ++++D+P L +I IP ++ GR YVC R+ L S Sbjct: 74 VL-LSTATKALQDQLFTRDIPELLEILKIP-VRVALLKGRSSYVCLHRLANARHSGILQS 131 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 P + LL ++ +T + L+ L +++ Sbjct: 132 AAPLR--LLGQVESWVTATRTGDVSEVPALEE------------------SQQLLPLVTS 171 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA---AMESEAVLPDPKNLLLV 246 + +C C Y+EC + ARR+ A+VVV NH L A ES P +V Sbjct: 172 TRENCTTSKCPRYQECHLYKARRDAMAADVVVINHHLFFADSNVRESGVAELLPTVNAVV 231 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQ-LDLFTKLVATCMEQFR 291 DE H L D+ L W LQ L+L +V C++ R Sbjct: 232 FDEAHQLNDIGVQFLGRQ------WSTLQLLNLGRDVVFVCLQWAR 271 >UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=11 Tax=Mycobacterium tuberculosis complex RepID=DING_MYCBO Length = 664 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 130/268 (48%), Gaps = 25/268 (9%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q++M A VA E G HL ++A TG GK+L+YL+P I A + +VVSTA +A Sbjct: 25 RRGQQEMAAAVAHAF--ETGEHLVVQAGTGTGKSLAYLVPAIIRALCDDAPVVVSTATIA 82 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNL--TALAS---TEPTQQDL 137 LQ Q+ +DLP L + + KF GR Y+C + + AS E Q++L Sbjct: 83 LQRQLVDRDLPQLVDSLTNALPRRPKFALLKGRRNYLCLNKIHNSVTASDHDDERPQEEL 142 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN- 196 F +T ++ Q+ A + G RD + D W ++S CL Sbjct: 143 --FDPVAVTALGRDVQRLTA-----WASTTVSGDRDDLKPGVGDRSWSQVSVSARECLGV 195 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVLDEGHHLPD 255 C + EC AR A+VVV NHAL+ + A+ AVLP+ + LLV+DE H L D Sbjct: 196 ARCPFGSECFSERARGAAGLADVVVTNHALLAIDAVAESAVLPEHR--LLVVDEAHELAD 253 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLV 283 R +AE+T+ + T+LV Sbjct: 254 --RVTSVAAAELTSATLGMAARRITRLV 279 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 12/238 (5%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE- 514 ++TSATL SF + GL R + + SPF H + G + + P D Sbjct: 412 VLTSATLTIGGSFDAMATAWGLTADTPWRGLDVGSPFQHAKSGILYVAAHLPPPGRDGSG 471 Query: 515 -EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRL 572 + + E+A + LG LF+S RA + + + + L +L QGD L Sbjct: 472 SAEQLTEIAELI--TAAGGRTLG---LFSSMRAARAATEAMRERLSTPVLCQGDDSTSTL 526 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 VE K A+ S L G S +G+D+ G LS V I +I FP D P++ + + Sbjct: 527 VE---KFTADAATS-LFGTLSLWQGVDVPGPSLSLVLIDRIPFPRPDDPLLSARQRAVAA 582 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 F + A+ L Q GRL+R G V + D R+ T YG+ L +LP F Sbjct: 583 RGGNGFMTVAASHAALLLAQGSGRLLRRVTDRGVVAVLDSRMATARYGEFLRASLPPF 640 >UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=Bacillales RepID=YPVA_BACSU Length = 641 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 169/683 (24%), Positives = 291/683 (42%), Gaps = 130/683 (19%) Query: 43 AGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSK--DLPLL 100 A +E + + EA G GKTL YL+ I+ AR K +++ A+ L +Q+ K D+ L Sbjct: 53 AFKEKKVMFAEAGVGTGKTLVYLLFAISYARYVGKPAIIACADETLIEQLVKKEGDISKL 112 Query: 101 KKIIPDLKFTAAFGRG--RYVCPRNL--TALASTEPTQQDLLAFLDDELTPNNQEEQKRC 156 + + DLK + +Y+C + L T S + DL E P+ E + Sbjct: 113 AEHL-DLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLY-----ESLPSFVHESQAM 166 Query: 157 AKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK-ASCLNRNCYYYRECPFFVARREIQ 215 + Y + + + +++ ++ W +S D CL C C ++R + Sbjct: 167 QRF------YPYGDRKQYANLSNEE--WSDVSYDSFQDCL--TCDMRHRCGLTLSRDYYR 216 Query: 216 EA-EVVVANHALVMAAMESEA---------VLPDPKNLLLVLDEGHHLPDVARDALEMSA 265 ++ ++++ +H M + +E +LPD + +V DEGH L A+ AL Sbjct: 217 KSTDLIICSHDFYMEHVWTEESRKREGQLPLLPD--HSAVVFDEGHLLEFAAQKALT--- 271 Query: 266 EITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI--ASLNNILN 323 YR++ + +E F + + N EE ELI A L N Sbjct: 272 ------YRVK--------QSTLELFLERLLQ--------NDIREEFAELIEDALLANDEF 309 Query: 324 LYMPAGQEAE----HRFAMGE---LPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 Y+ + + E HR + + E+C+ L K+ E L +E++ D Sbjct: 310 FYVLSEESKEVAGSHRLEIKNDHRVKKAADELCRLLDKIGEALVFESEMYTID------Q 363 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 +++ + + QM +L +++ + W A+S+ F + Sbjct: 364 YELSVVEEYVEQMAYSLSLYQKDAISWLEKKEAEST--------------------FVVM 403 Query: 437 GIRVSDQL-ERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHC 495 V++ L E++ + IP+I +SATL SF + + G+ + + +DSP+++ Sbjct: 404 PRTVAEVLGEKVFSKKIPYIF-SSATLSEGGSFDYIADSLGIHDYLS---LTVDSPYDYD 459 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES-KKHLG-MLVLFASGRAMQRF--L 551 EQ I + + +D EQ AE +E+ K++ G LVLF S + F L Sbjct: 460 EQMSI---NLYAKTDMDA-EQKTAET-------IETIKRYKGRTLVLFPSFEELNEFKEL 508 Query: 552 DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 +L + +GD+ LVE + E +VL + + EGLD+ GD L V I Sbjct: 509 SAAWELPYPIFFEGDEEISSLVE----KFQEEEETVLCSVHLW-EGLDIPGDALKNVTIW 563 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 + FPP D PV + K + PFE LP + Q +GRLIRS+ G + IY Sbjct: 564 SLPFPPHD-PVFTAKRNGAK---KDPFEEVDLPYMLLRVRQGIGRLIRSNQDSGSIHIY- 618 Query: 672 KRLLTKNYGKRLLDAL-PVFPIE 693 +R++D + V P+E Sbjct: 619 ----AGGENERIIDEVKKVLPVE 637 >UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FSD6_9FIRM Length = 669 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 172/705 (24%), Positives = 292/705 (41%), Gaps = 100/705 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA--IAREEQKTLVVSTAN 85 R Q+++ ++ + L +E + EA G GKT +Y++ I +++ V+ST+ Sbjct: 25 RVKQKELSLEMLRAL--QENKLALCEAEVGTGKTHAYILALTVHNIYSDKKIPAVISTST 82 Query: 86 VALQDQIYSKDLPLLKKIIPD-------LKFTAAFGRGRYVCPRNLTAL-ASTEPTQQDL 137 +ALQ + + +P + I+ + L F G+ YVC L S + Q+++ Sbjct: 83 IALQKALTEEYIPQISGILLEHHVIDKPLSFVVRKGKRHYVCDSRLKIYETSLKNLQREV 142 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 A L EL ++E R DLD D + + R++ + N+ Sbjct: 143 DANLILELARLGEQEFDRI-----DLD-----------DAVLTPYVKGRINVFRC---NK 183 Query: 198 NCYYYRECPFFVARRE--IQEAEVVVANHALVMAAM--ESEAVLP-DPKNLLLVLDEGHH 252 +C Y C F +++ + + NH ++A + + + P P +V DE H Sbjct: 184 SCPYSLLCRFMNFKKKCMTDNFDFQITNHNYILADLIGQKQGRKPLFPGYGAMVFDESHK 243 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 L D AR ++ +T ++ + I L+ R +EL Sbjct: 244 LIDAAR----------------------QMYSTVWDEQDAEFIVGLSEVNRRTTGMDELT 281 Query: 313 ELIASLN--NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L + L N AG A + G + V+ +++ + M + L +L L+ Sbjct: 282 VLRSQLAEYNRQIFDRLAGDLAGNHTREGSRIEIVIGSMEKIY-IRHMAKALEQLPLS-Y 339 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 E +G Q R G+ + +L ++ +SG + W + E G+L Sbjct: 340 QENSG------------QKMRLQGLKKRCQELTDKLTIFLNSGNSIC-WMEKRE-NGRLA 385 Query: 431 LWFHCVGIRVSDQLERLLW-RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 L V + + L R +W R IP +I+TS T+ FS + M+GL A R + Sbjct: 386 LC--AVPMELEQVLFRDIWSRPIP-VIITSGTMSVRGDFSHFKRMTGLSFAALSRIMETS 442 Query: 490 --SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 SPF+ G + IP P+I ++ A M Q+ S H L+LF S M Sbjct: 443 KPSPFDFQSNGLLYIPERMPFPNIRDDRYIQAIMEEIV--QIVSATHGHTLILFTSYWLM 500 Query: 548 QRFL----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 +R + ++D L L+ +G R ++ R R NG VL S EG+DL GD Sbjct: 501 ERVFYGLKEQLSDYPLFLMGRG---RLDVISSFR-RSGNG---VLFASDSAGEGIDLAGD 553 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 +LS + + K+ FP D PV+ + + Y ++ +P L Q GR IR Sbjct: 554 ILSSLIVVKLPFPVPD-PVMEYQRNQYDDFDLYRRDI-IIPEMLIKLRQWFGRGIRREKD 611 Query: 664 WGEVVIYDKRL-LTKNYGKRLLDALPVFPIEQP--EVPEGIVKKK 705 I D R L Y +L+ +P P+ +V + I++KK Sbjct: 612 TAVFSILDSRASLRGRYRAEILNTMPTMPVTDRLMDVADFIIRKK 656 >UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP Length = 698 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 36/256 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q QM VA + L EA TGVGK+L+YL+PGI A ++ + L+VST ++ Sbjct: 43 RPEQEQMGRAVAAAF--RDDAPLLFEAGTGVGKSLAYLVPGILHAIDQSRQLIVSTHTIS 100 Query: 88 LQDQIYSKDLPLLKKII---------PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 LQ+Q+ +KDLP+ +++ D K T G+ Y+C L + T Sbjct: 101 LQEQLETKDLPICRRLFRSNPALARYADFKATVLVGKSNYLCTTRLAHALADRAT----- 155 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 F D E +E +R A G +T GLR ++W ++ D +SC ++ Sbjct: 156 LFADAEY-----DELQRIAAWAGKTET----GLRHELRPPPRPEVWDVVNADSSSCSRKH 206 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMA-----AMESEAVLPDPKNLL-----LVLD 248 C +C + AR ++ A V+V NHAL+ A ++ D + +L +VLD Sbjct: 207 C-DCEKCFYQRARARLRAANVIVVNHALLFALINAGGAQAHGATTDARGVLFPDDFVVLD 265 Query: 249 EGHHLPDVARDALEMS 264 E H +PDVA + +S Sbjct: 266 EAHTVPDVATENFGLS 281 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 137/324 (42%), Gaps = 21/324 (6%) Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR--------EEREG--Q 428 + LHRL+ ++ L + +L +S A VT+W T ER G Q Sbjct: 357 LTALHRLLGKLADKLDEGRERDELLEQKLRIKSLQAGVTEWLTLGDPGHVYWAERSGRKQ 416 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL 488 + I V+ +L + L+ ++ TSATL + G + R VA+ Sbjct: 417 TIVTLRSAPIDVAPELRQHLFGCNTSVVCTSATLAMGGEIAPFAARIGADDA---RAVAV 473 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SPF+ ++ + PS + + + R E + G LVLF S M+ Sbjct: 474 KSPFDFEHHMRVYVATDVPLPSPQEARLALDALTDYIRFCTERVRG-GSLVLFTSYADMR 532 Query: 549 RFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGER----SVLVGLQSFAEGLDLKGDL 604 T L + G + EL R +A R +VL G SF G+D+ GD Sbjct: 533 AI---ATTLEPVYRAAGRPFMMQGAELSRTELAQQMRHLGNAVLFGTDSFWTGVDVPGDA 589 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L+QV I ++ F P P+ + ++ PF +LP A Q VGRLIR+ Sbjct: 590 LAQVIITRLPFDPPTHPITEARCDHIRDRGGNPFNELTLPDALIKFRQGVGRLIRTATDR 649 Query: 665 GEVVIYDKRLLTKNYGKRLLDALP 688 G + I D R+L K+YG+ ++ LP Sbjct: 650 GLITILDSRVLAKSYGRLFVECLP 673 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 142/664 (21%), Positives = 281/664 (42%), Gaps = 109/664 (16%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA 111 IEA G GK+L+YL+ + E K +++ST LQ Q+ KD+P + + + + K A Sbjct: 274 IEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAMNEAL-NFKINA 332 Query: 112 AFGRGR--YVCPRNLTALASTEPTQQD-------LLAFLDDELTPNNQEEQKRCAKLKGD 162 + + Y+ ++ + + + + LL ++ + + + QE LKG Sbjct: 333 LLIKSKSDYISLGLISQILKDDTSNYEVNILKMQLLIWITETPSGDIQE-----LNLKG- 386 Query: 163 LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVA 222 G + + D I+ + R + +YY +R Q ++ + Sbjct: 387 -------GQKMYFDQKIETYVPAR----------HDVHYYN-----FIKRNAQNIQIGIT 424 Query: 223 NHA-LVMAAMESEAV-LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFT 280 NHA L+ + +E+ L D ++DE H LPD A + +++ E++ + QL L Sbjct: 425 NHAHLIHSDVENSIYQLFDD----CIVDEAHRLPDYALN--QVTNELSYADIKYQLGLIG 478 Query: 281 K----LVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRF 336 K + ++Q + I E+L+ +++ L AS+N I Sbjct: 479 KNENEKLLKAIDQLEKQ-----RILEKLDIAPIDIFGLKASMNEI--------------- 518 Query: 337 AMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR-LHRLILQMNRALGM 395 EL +++ + +++ F N + +T DI++ LH +I ++N+ L + Sbjct: 519 --HELNEQLFSTIFTIINDSDVYDDDIHRFHNVFTFETK--DILKDLHAIIDKLNKTLEI 574 Query: 396 FEAQSK----------LW---RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSD 442 F S L+ + ++ QS A T + + + + + + V D Sbjct: 575 FNGISHKTVKSLRKQLLYLKDKFKNIEQSLKAGHTSFISIKNLSQKSTIRLYVKDYAVKD 634 Query: 443 QLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI 502 L + + +I S TL+ +SF +++ K+ + F +++ + + I Sbjct: 635 VLTKQVLEKFKSLIFISGTLKFNHSFDAFKQLFN-KDVHFNTF-EVNTSLQSAKNTSVFI 692 Query: 503 PRMRVEPSIDNEEQHIAEMAAFF--RKQVESKKHLGMLVLFASGRAMQRFLDYVTDL--- 557 P N ++++A + ++ + S K LVLF S + M D + +L Sbjct: 693 PSDVASYQYKNIDEYVASIVSYIIEYTTITSSK---CLVLFTSYKMMHMVQDMLNELPEF 749 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF- 615 ++L Q Y++V+ + N ++++L+G +F EG D + + + V I K+ F Sbjct: 750 EDYVVLTQQQNQNYKIVQ----QFNNFDKAILLGTSTFFEGFDFQANGIKCVMIAKLPFM 805 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 ++ + + E+ + Y LP A Q +GRLIR+ G +V +D RL+ Sbjct: 806 NKHNAKYWLMDSEFTSTFKEYV-----LPDAVTRFRQGLGRLIRNENDRGIIVSFDDRLI 860 Query: 676 TKNY 679 NY Sbjct: 861 NSNY 864 >UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_DELAS Length = 724 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 120/253 (47%), Gaps = 34/253 (13%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 I TSATL S E GL+E + + +DSPF++ Q + +PR + Sbjct: 450 IFTSATLGDDERLSWFTEPCGLREA---QVLRVDSPFDYARQAALYVPRPFAQAGSATHS 506 Query: 516 QHIAEMAAFFRKQVESKKHLG---------MLVLFASGRAMQRFLDYVTDLRLMLLVQGD 566 +A +A +++ + LG + L A G A+Q+ L +L + LVQG Sbjct: 507 TEVARLA------LDAAQRLGGRTLVLTTTLRALHAIGDALQQSLGLFGELDV--LVQGQ 558 Query: 567 QPRYRLVELHRKRVANGER-----------SVLVGLQSFAEGLDLKGDLLSQVHIHKIAF 615 P+ L+E + +A GE +LV +F EG+DL GD L V I K+ F Sbjct: 559 APKLALIE---RFIAAGEGREGTGASPGRGCILVASATFWEGVDLPGDALQLVVIDKLPF 615 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 PP D P+V L+S+ R F LP A+ L Q GRLIR G +V+ D RL Sbjct: 616 PPPDDPLVEARSRSLESVGRQAFADYMLPEAAMALKQGAGRLIRRETDRGVLVVCDSRLA 675 Query: 676 TKNYGKRLLDALP 688 T YG+RL ALP Sbjct: 676 TMGYGRRLRAALP 688 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 24/260 (9%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 +LTAA++A A L F+PR Q +M VA+ + E+ + L +EA TGVGKT Sbjct: 3 SLTAAVQAAFAP-QGLLSRAEALFLPREGQTRMALAVAQAI--EQRQTLVVEAGTGVGKT 59 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVC 120 +YL+P + + ++VSTA ALQDQ+Y++DLP L+ + L+ GR Y+C Sbjct: 60 YAYLVPALL----SGQRVLVSTATRALQDQLYARDLPRLVAALGMPLRMARLKGRSAYLC 115 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 L + QD L E R + GDL D A+ Sbjct: 116 MERLERVRQGRTAPQDPQVLRSVALV----ERWARTTR-TGDLGELP---ALDERSPALP 167 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVL 237 +++ + +CL +C ++++C VARR EA+VVV NH L+ A + ES Sbjct: 168 -----LVTSTRDNCLGSDCPHWQDCHVNVARRAALEADVVVINHHLMFADLDVRESGVAQ 222 Query: 238 PDPKNLLLVLDEGHHLPDVA 257 P ++V+DE H L D Sbjct: 223 LLPSVGVVVVDEAHQLNDTG 242 >UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM22_9BACT Length = 850 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 34/251 (13%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 LQ+ + + R Q ++A+++ E +L IE TG GK+++YL P Sbjct: 167 LQDSMKGYEFRQEQFMTALEIAESI--ERDSNLMIEVGTGTGKSIAYLAPVAYACISTMN 224 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 VVST LQDQ++ KD+ +LK + DL+ + GR RY+C R L E Sbjct: 225 QAVVSTRTRILQDQLFKKDVEILKTFPNLDDLRVSVMKGRERYLCARKL-----FEVVNL 279 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 L LD+E++ +L G L G D + I +++ R +S ++ C Sbjct: 280 ALNKMLDEEMS----------KELSGILIWSMITGEGDLDPLPIKEEMRRMISGNRFDCT 329 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD-------------PKN 242 R C ++ CP++V R + +++V+ NH+ + + E+ L D P+ Sbjct: 330 RRLCPFFEICPYYVQRENAKSSDIVITNHSFLFS--EANIRLSDGDAEEREDIGTLLPRF 387 Query: 243 LLLVLDEGHHL 253 LV+DE H L Sbjct: 388 KYLVVDEAHEL 398 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 125/264 (47%), Gaps = 30/264 (11%) Query: 441 SDQLERLLWRSIPHIIVTSATL----RSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 +D L ++ + I SATL R + F+ + + G + + V L + F++ + Sbjct: 575 NDTLMASIFPDVSVKIFISATLWVYSRGSDGFNYARRILG--TSSNNEAVRLGTSFDYTQ 632 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT- 555 Q K +P + + N ++ E A+ + G +VLF S M+ L ++ Sbjct: 633 QLKFFVP-VDLPDYFPNSLTYL-ESASDITLNALNIVGGGSMVLFTSYEDMKWTLSRISG 690 Query: 556 ---DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 D+ + + + D P L + H N E+SV+ G ++F EG+DL G+ L + ++K Sbjct: 691 RLGDMSIHIQDREDSPTTILAD-H----VNSEKSVIFGARAFWEGVDLPGEQLRLLIVYK 745 Query: 613 IAFPPIDSPVV------ITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 + F D P++ + +++ +N+Y + P Q +GRLIR+ G Sbjct: 746 LPFERPDEPLIEARIKHYGKRSFVEGMNKYYY-----PKMITAFRQGLGRLIRTRNDHGV 800 Query: 667 VVIYDKRLLTKN--YGKRLLDALP 688 V++ DKR++ N Y K+LL +LP Sbjct: 801 VIVIDKRIVDPNRVYSKKLLASLP 824 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 165/694 (23%), Positives = 282/694 (40%), Gaps = 68/694 (9%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP-GIAIAREEQKTLVVSTANV 86 R Q M+ + E L IEA TG+GKT+ YL+P ++R+ + LVV+T+ Sbjct: 261 RKAQATMMDLIHDNFESETPEPLLIEAATGLGKTIGYLLPYSYRMSRDHK--LVVATSTT 318 Query: 87 ALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 LQ+QI ++ PLL++++ A + + L+ P + ++ L ++ Sbjct: 319 LLQEQILTQAKPLLERLVGRQINAAVVKSASHYIDLHRFELSLRLPHKNRMIRLLQMKIL 378 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 GDLD + ++I R L++ LN +Y E Sbjct: 379 V------WLTQTTTGDLDELNLTSYKTPFFVSIQH---RGLAS-----LNPQAPFYHEDF 424 Query: 207 FFVARREIQEAEVVVANHALVMAAMESEAVL-PDPKNLLLVLDEGHHL----PDVARDAL 261 Q+AE++V NHA + + + + + P P LVLDE ++ ++++ Sbjct: 425 LRRLTHRQQQAELLVTNHAYLASHADEQQIWGPKP---YLVLDEAQNMVFNVQTISQETW 481 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 +S+ W + L T + + P P + L+ +L +A L Sbjct: 482 SLSS--WQFWAQKGLQYTTGAQTNNLVRLFPAETPQNRSLKLLHKTLGKLTRTLAHLETY 539 Query: 322 LN-LYMPA----GQEAEHRFAMGELPDEVLEIC----QRLAKLTEMLRGLAELFL----- 367 L + P GQ R+ PDEV++ + +L L + + FL Sbjct: 540 LTEQFEPDEPTDGQTFSERYLN---PDEVIQFVNASQREFGQLNRELLTIQDHFLALRYA 596 Query: 368 --NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRL--ASLAQSSGAPVTKWATRE 423 + L+ T S D+ ++N L + + +L A+ Q A + TR Sbjct: 597 LEDQLARYTES-DLAIWQSFENELNLLLADVDHYQRFEQLFIATKPQERHALAIQ-ITRP 654 Query: 424 EREGQL-HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 + QL H + Q++++L P + +T ATL F L+ G E+ Sbjct: 655 SQPSQLPQFKLHWQLLSAGPQMQQVLSHFEP-VTLTGATLAVNGHFDYLKREFGFTEEQA 713 Query: 483 DRFVALDSPFNHCEQGKIVIPR-MRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 + L SPF +Q + I V+ + + H ++AA + + H L+LF Sbjct: 714 LQTKKLRSPFRFKQQARFYIAEDGPVQKELTPSDYH-QQVAAQVMTLIANNPH-QTLILF 771 Query: 542 ASGRAMQRFLDYVTDLRLML----LVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 + + +++ + L L L QG E KR G SVL+ SF G Sbjct: 772 NANQTLEQVYYALGRAGLSLDREVLAQGITGS---AEKITKRFMLGHDSVLLATSSFVSG 828 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVI---TEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 +D L V + ++ P D+P + L + PF+ ++LP A+ L Q Sbjct: 829 VDFPEAALEMVILVQL---PFDAPNALQTRVRYAQLAAQGINPFKAEALPKATIRLRQSF 885 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 GRLIR+ G + D RLLT YG+++ ALP Sbjct: 886 GRLIRTPNDHGLFICLDPRLLTTQYGQQMRRALP 919 >UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCJ4_9GAMM Length = 643 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 128/249 (51%), Gaps = 26/249 (10%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 + Q P+F+ R Q+QM V +++ ++ L +EAP+G GKTL+YL+P + A+ Sbjct: 17 IDRQWPEFVAREGQQQMAIRVQQSI--DDQVSLLVEAPSGSGKTLAYLVPIVMTAQRA-- 72 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQD 136 ++STA+ LQ Q++ DLPL++ ++ + A GR Y+CP L ++Q+ Sbjct: 73 --IISTASRYLQSQLFKHDLPLIQGLLGSHRKVALLQGRSNYLCPYYLDKNTLRLRSEQE 130 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA--IDDDLWRRLSTDKASC 194 D ++ ++ +L ++ G+ + + +A + L +++ + C Sbjct: 131 SSGGYD-------RQSYQQLTRLS---QRFRNTGIGELSLLAPELAPGLLPHVTSSRDDC 180 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHAL-----VMAAMESEAVLPDPKNLLLVLDE 249 L+ C + CP AR++ + A++V+ NH+L VM + ++LP ++V+DE Sbjct: 181 LSTQCPDFSRCPLMAARQQAEGADIVIVNHSLLFSDQVMRKEQLGSLLPSAG--VVVVDE 238 Query: 250 GHHLPDVAR 258 H + D A+ Sbjct: 239 AHRISDFAQ 247 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 17/262 (6%) Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPF 492 + + +S ++ L +S I TSATL +S R + + GL F S Sbjct: 372 IQTIPLTISLLIKELFQQSPCSWIFTSATLTVNSSPDRFKRVLGLDAV---NFYQASSDI 428 Query: 493 NHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 + Q + P++ V+P D + E + + +L LF+S R + Sbjct: 429 DFQRQAMLYTPKIPVDPRKDEFYDYYVEQLLPLLAAAKGR----VLCLFSSYRGLNATAS 484 Query: 553 YVTDLRLMLLVQGD--QPR----YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + +L+Q PR Y+LV ++ N + +L+ SF EG+DL G LS Sbjct: 485 RLRRKGKAVLIQRSPRDPRRVDNYKLV----AQLKNQPQGILLATGSFWEGVDLSGFPLS 540 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I K+ F D P++ + L F LP A L Q GRL+R G Sbjct: 541 AVAIDKLPFAHRDDPLIQLRSQELSGHGVDSFSEYLLPDAIVRLRQGCGRLLRRVSDRGV 600 Query: 667 VVIYDKRLLTKNYGKRLLDALP 688 ++I D RL ++ YG+ + +LP Sbjct: 601 IMIADPRLQSQAYGQDFMASLP 622 >UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD43_9ACTO Length = 646 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 PR Q M A+ A L E+ +HL ++A TG GK++ YL+P + VVSTA + Sbjct: 24 PREGQASMCAEGAAAL--EDRQHLLVQAGTGTGKSVGYLVPLLTHCAMNGVRGVVSTATL 81 Query: 87 ALQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 ALQ QI KD P++ + LK G Y C L L PT+ L Sbjct: 82 ALQRQILVKDAPVVVDAVASATGARLKVAVLKGWSNYAC---LHKLDGGYPTEGTLFEDH 138 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 D + P E K +++ + + G RD + D WR S K CL ++C Sbjct: 139 DMSVGPTG-ELGKEILRIR-EWISETTTGDRDDLVPGVSDRAWRHASVAKPECLGKHCPL 196 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 EC AR E +A+VVV NH+L E L + +V+DE H L D R Sbjct: 197 IDECFAQAARLEAADADVVVTNHSLFGINACGEGELFGEYD-AVVIDEAHELADRVRS-- 253 Query: 262 EMSAEIT 268 + +A++T Sbjct: 254 QAAADLT 260 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 122/259 (47%), Gaps = 19/259 (7%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD--SPFNHCEQGKIVIPRMRVEPSIDN 513 I+TSATL +F + G+ +G + +D SPF+H QG + P D Sbjct: 396 ILTSATLAIGGNFDFMAAQVGMA-VSGVPWHGIDVGSPFDHGRQGIRYVATHLPLPGRDG 454 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGR---AMQRFLDYVTDLRLMLLVQGDQPRY 570 + + + + GML LFAS R A + L TDL + L QG++ Sbjct: 455 PSEELLDELVELAQASGG----GMLALFASRRGAMAGGQALRERTDLTVYL--QGEETLA 508 Query: 571 RLVELHRKRVANGER-SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 +L++ R+ ER S LVG S +G+D+ G V I KI FP D PV Sbjct: 509 QLIQRFRE-----ERDSCLVGTMSLWQGVDVAGAACRLVVIDKIPFPRPDDPVSRARSMD 563 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP- 688 ++ F SL A+ + Q VGRL+RS G V I D R++TK YG ++ +LP Sbjct: 564 VERRGGNGFVSVSLTHAALMMAQGVGRLLRSTDDRGVVAILDPRVVTKRYGGFIMRSLPA 623 Query: 689 VFPIEQPEVPEGIVKKKEK 707 ++P PEV G +++ K Sbjct: 624 MWPTTDPEVVRGALRRLAK 642 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 143/671 (21%), Positives = 263/671 (39%), Gaps = 101/671 (15%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA 111 IEAP G GK+L+YL+ E + +++ST LQ Q+ KD+PLL ++ D K A Sbjct: 274 IEAPLGSGKSLAYLLAATMYNIETGRHVMISTNTKLLQSQLLEKDIPLLNDVL-DFKINA 332 Query: 112 AF--GRGRYVCPRNLTALASTEPTQQD-------LLAFLDDELTPNNQEEQKRCAKLKGD 162 + + Y+ ++ + + + LL ++ + T + QE LKG Sbjct: 333 SLIKSKNDYISLGLISQILKDDTNNYEVSILKMQLLIWITETNTGDIQE-----LNLKG- 386 Query: 163 LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVA 222 G + + D I+ + R + +YY +R Q ++ + Sbjct: 387 -------GQKMYVDQKIETYVPVR----------HDIHYYNYI-----KRNAQNIQIGIT 424 Query: 223 NHALVMAAMESEAV--LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL---D 277 NHA ++ + + L D ++DE H LPD A + + + Y+L L + Sbjct: 425 NHAHLIHSDSENTIYQLFDD----CIIDEAHRLPDYALNQVTNDLNYSDVKYQLGLIGKN 480 Query: 278 LFTKLVATC--MEQFR--------PKTIPPLAIP-ERLNAHCEELYELIASLNNILNLYM 326 KL+ +EQ R P + L I L+ E+L+ I ++ ++Y Sbjct: 481 ENEKLLKAVDKLEQQRILEKLDIAPIDVFGLKININELHDLNEQLFTTIYNIIQTSDVYD 540 Query: 327 PAGQEAEH--RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHR 384 + + F GE+ ++ I +L K E+ G+ N + K+ ++ LH Sbjct: 541 DDIHKYHYVYDFETGEILKDLRAIIDKLNKTIEIFNGM-----NHKTIKSVRKQLLYLHD 595 Query: 385 LILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQL 444 + +++ + + + +LAQ S + V D L Sbjct: 596 KFKLIEQSIK--DHHTSFISIKNLAQKSTIRLL-----------------VKDYDVKDIL 636 Query: 445 ERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR 504 + + + S TL +SF Q + E + +P + +P Sbjct: 637 TKQVLEKFKSLTFISGTLTFNHSFKAFQ--NWFNEDIDFNTFEISTPLTSSNHTNVFVPN 694 Query: 505 MRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLM 560 + N + ++A + + + + + LVLF S + M D + +L + Sbjct: 695 DVETYNYKNLDDYVASIVDYIVEYITVTQS-KCLVLFTSYKMMHMVQDLLNELPELEDYV 753 Query: 561 LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF-PPID 619 +L Q Y++V+ + N ++S+L+G +F EG D + + L V I K+ F + Sbjct: 754 ILTQQQNQNYKIVQ----QFNNFDKSILLGTSTFFEGFDFQANGLKCVMIAKLPFMNKHN 809 Query: 620 SPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 + + E+ + Y LP A Q +GRLIR G +V +D RL+ Y Sbjct: 810 IKYWLMDSEFTSTFKDYV-----LPDAVTRFRQGLGRLIRHEDDKGLIVSFDDRLVNSTY 864 Query: 680 GKRLLDALPVF 690 +L F Sbjct: 865 KSFFAQSLEHF 875 >UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepID=A9GFB8_SORC5 Length = 697 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 130/301 (43%), Gaps = 40/301 (13%) Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS----FSR 470 P T T E G+ + F + + D L ++ I +++TSATL + S F Sbjct: 377 PATNQVTWVEVRGR-AVSFGASPVDLGDMLREHVFERIGAVVLTSATLTTGGSAGAGFRF 435 Query: 471 LQEMSGLKEKAGDRFVALD-----SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 L+ GL E D V +D SPF++ + PR E + + E AA Sbjct: 436 LRSRMGLDE---DVSVPVDELEVPSPFDYPTAALLYTPRDLPEAT----DAAFVERAADR 488 Query: 526 RKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLM------------------LLVQGDQ 567 ++ G +L S RAM L +RL LLVQGD Sbjct: 489 AAELIGITGGGAFLLCTSIRAMN-ALAAALRVRLGRAAAVARADGGAPGRQAPLLVQGDA 547 Query: 568 PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 P+ L+ R +VLV SF EG+D+ G+ L V I K+ F PVV Sbjct: 548 PKGALLRRFRAE----RHAVLVATMSFWEGVDVPGEALRLVIIEKLPFAVPTDPVVAARC 603 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 ++ PF S+P A+ L Q GRLIR+ G V I D+R+ T+ YG+ LLD+L Sbjct: 604 TAIEQGGGNPFIAYSVPQAAITLKQGFGRLIRARTDRGIVAILDRRIRTRGYGRVLLDSL 663 Query: 688 P 688 P Sbjct: 664 P 664 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 34/242 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M + V + LA E R L EA TG GKTL+YL+P I R+ +VVSTA A Sbjct: 26 RQGQVAMASAVERALA--EDRILLCEAGTGTGKTLAYLVPAILSGRK----VVVSTATKA 79 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 L+DQIY+KDLPL+ + + D + G G Y+C R + L T P +A L Sbjct: 80 LEDQIYTKDLPLVAEHLRLDPRAALVKGLGNYLCLRRFSEL-RTSPGAGAGIAGRSLPLI 138 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 +E + GD + + +A D LWR +++ + L +C Y+ C Sbjct: 139 EAWAQETE-----MGD--------VAELAHLAEGDPLWREVASSSETRLGASCEYFERCF 185 Query: 207 FFVARREIQEAEVVVANHALVMA-----------AMESEAVLPDPKNLLLVLDEGHHLPD 255 +R+ + A ++V NH L A LP P + ++ DE H L D Sbjct: 186 VTRMKRDSEAARLLVVNHHLFFADLALKMAGARRGFAGAGALP-PYD-AVIFDEAHQLED 243 Query: 256 VA 257 +A Sbjct: 244 IA 245 >UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2 Tax=Aquificaceae RepID=A8URH3_9AQUI Length = 644 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 165/675 (24%), Positives = 273/675 (40%), Gaps = 109/675 (16%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q + IA V L +EG +EAPTG GKT +YLIP I ++ ++ST Sbjct: 18 RESQEKFIALVRDLL--DEGGVKLVEAPTGTGKTFAYLIPLITSGQK----AIISTGTKI 71 Query: 88 LQDQIYSKDLPLLK---KIIP--DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQDQ+ +D+ L K++ D+ + G+G Y+C + L P ++L Sbjct: 72 LQDQL-KRDIEFLTGHYKLLTGEDVSYAVIKGKGNYLC---IDRLHKERPPAEELGD--- 124 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN-CYY 201 P+ E Q +GDL T + I +DDD + ++ C R+ CYY Sbjct: 125 ---VPDLMETQ-----WEGDL-TLSSCTPEAVSKINVDDDYC--TPSYRSVCPYRSECYY 173 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL---LLVLDEGHHLPDVAR 258 + + AR ++++V NHAL+ L D +N +LV+DE H L Sbjct: 174 WEKVKLREAR-----SQILVVNHALL--------ALKDFENTEERVLVIDEAHELDRYL- 219 Query: 259 DALEMSAEITAPWYRLQLDLFTKL----VATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 L ++ ++ W+R + + KL V E F + L E+ E L Sbjct: 220 -TLASTSALSVYWFRELIGVLEKLSGQEVKLSPEDFFRDRLESLFTEEKHEVVLESLSPY 278 Query: 315 IASLNNILN-----LYMPAGQ----EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 + L + L+ +Y + EAE E + L + +L E Sbjct: 279 VLDLKDKLSEPIKKVYSDIKERLIAEAE------EFLEGRLMVSFKLKGFLESTLLFPPE 332 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ-SKLWRLASLAQSS----GAPVTK-W 419 FL+ K G D +++ + L E + KL + L + G V+K W Sbjct: 333 FLDRF--KAGYEDPDEEENRLIEKIKKLDYIERKLQKLSQFIRLCEEDKEEFGYKVSKSW 390 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 + + + F + D S +++TSAT+ + ++ +G+ Sbjct: 391 SKKLQTYNYKMEIFPVFPRGIIDP------HSYKGVLLTSATIDPED----IEFTTGI-- 438 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 G F L F++ K+ P + E+ + E R H +LV Sbjct: 439 --GGEFYRLGHNFDYS---KVTFIITNTNPKREGWEEKLKESYEDIRNL-----HEKVLV 488 Query: 540 LFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 L + R ++ F D + QG+ L+E R+ G+ VL+GL S G+D Sbjct: 489 LLTNRRHLKLF-----DGEGDIAKQGEDSLNSLIE----RIREGKIKVLIGLDSLWTGID 539 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 ++G+ + + K+ F + PV +L+S+ PFE Q A Q VGRL+R Sbjct: 540 VRGE--KGILMSKLPFESPEDPVTYHRIRYLRSVGEDPFEYQR-RKAFIKFRQGVGRLVR 596 Query: 660 SHGCWGEVVIYDKRL 674 G +V+ D R+ Sbjct: 597 QKTDSGTIVLCDNRI 611 >UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0X6_DEIDV Length = 1683 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 177/766 (23%), Positives = 308/766 (40%), Gaps = 144/766 (18%) Query: 4 TAALKAQIAAWYKA-LQEQIPDFIP--RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 AL A W + L +Q+ D +P R Q +M V+ TL+G GR L +EAPTG GK Sbjct: 219 AGALTEVSAVWSEGRLPQQVSDMLPSPRPGQLKMAESVSATLSGP-GR-LVVEAPTGTGK 276 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 T +YL P + + E K +V+ST LQ+QI K+ LK ++ A G+ Y+C Sbjct: 277 TRAYLYPAL-LRGEPGKPVVISTHTKQLQNQIV-KEAQHLKDAGFKVRVVALKGQSNYIC 334 Query: 121 PRNLTALAS-------------TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGD----- 162 P L L + E ++DL A ++ + R L G Sbjct: 335 PERLQLLLTRRFRPDEVPEADQYEANEKDLSAGVETASDVAEDQRPGRLIMLPGQARAVA 394 Query: 163 -----LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN-CYYYRECPFFVARREIQE 216 ++ L + L ++ T + R+ C + C + + + + Sbjct: 395 LLTLHAQAGEYGALPPSALTRSPEYLQAKIVTSTVAKRCRDACPFSTCCSYHRTQALVPQ 454 Query: 217 AEVVVANHALV----MAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWY 272 A+VVV NHAL+ + +E E + D +V+DE H L D A AL Sbjct: 455 ADVVVVNHALLLRNQLGGLEQENLPFD----RVVVDEAHDLQDAAESALRQ--------- 501 Query: 273 RLQLDLFTKLVATCMEQFRPKT-------IPPLAIPERL--NAHCEELYELIASLNNILN 323 ++ + + + +F +T +P + R+ +A+ L + A+ ++L Sbjct: 502 ----EIGSDAILSVAREFLRRTHGESAGLLPSIEKAARVAQDANLATLSQKAATAFDVLV 557 Query: 324 LYMPAGQEAEHRFAM---------------GELPDEVLE---ICQRLAKLTEMLRGLAEL 365 + Q A FAM LP + E + + +LT L+ A Sbjct: 558 ARVDTWQAALQAFAMQFGQGSEAFGFQAAVDPLPMQSAEWRAVTRASEELTSSLKYCAG- 616 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMN---RALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 F+ L++++ + L L+ ++N LG+ A+S ++G + WA Sbjct: 617 FIPSLAQRSSYQ--MDLEALLARLNDQIDTLGVLLARSLPGAHVYAVTANGDSASIWA-- 672 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 + LW V LE LW+ ++ TSATLR ++ + +G Sbjct: 673 ------VPLWLSSV-------LEE-LWKKTSSLVFTSATLRVPGTWD--------AKGSG 710 Query: 483 D--RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI-----------AEMAAFFRKQV 529 D F + E +V+P P + ++ ++ + + +++ Sbjct: 711 DVADFGVFERDLALPESSYMVLP-----PVLPYDKGYVLLTSHLPLVHHPDFSGLVGQEI 765 Query: 530 E---SKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 + ++ L +F + ++R ++ L + G Q + +LH +GE Sbjct: 766 DNLVTQTPNQALHIFTANERLRRASRHIKKRHLNSVRDGTQ--RTVQDLH----GDGEWH 819 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 L G F +G+D++ L+ V + K F PI V+ + + Y + LP A Sbjct: 820 AL-GSAGFLQGVDIRD--LTLVSLDKTPF-PIPDLVLEAQRRDVNDFETY-WNTLYLPRA 874 Query: 647 SFNLIQQVGRLIRS--HGC-WGEVVIYDKRLLTKNYGKRLLDALPV 689 +Q GRL+R+ G G V++DKRL +Y R L ALP+ Sbjct: 875 VLKFVQGFGRLVRNDREGLPAGAFVVWDKRLAFAHYQDRFLGALPI 920 >UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355EC Length = 765 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 163/708 (23%), Positives = 279/708 (39%), Gaps = 129/708 (18%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA--IAREEQKTLVVSTAN 85 R Q+++ + + L +E + EA G GKT +Y++ + + + ++ST+ Sbjct: 122 RKSQKELALSMLRAL--QENKLALCEAEVGTGKTHAYILAVTIHNLFSQSKTPTMISTST 179 Query: 86 VALQDQIYSKDLPLLKKIIPD-------LKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 +ALQ+ I + +P + +I+ + L F G+ +VC L S+ Q Sbjct: 180 IALQEAITKEYIPQISRILLEHRIIDKPLSFVVRKGKSHFVCDSRLKTYESSIRNQ---- 235 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI---AIDDDLWRRLSTDKASCL 195 N E+Q A+L G+L W + D+ + + R++ + S Sbjct: 236 ---------NRPEDQGLLAQL-GEL----WREQEHYLDLDGFPLTPYVKERINVSQCSEF 281 Query: 196 NRNCYYYRECPFFVARREIQEA-EVVVANHALVMAAM----ESEAVLPDPKNLLLVLDEG 250 + Y R F +RR + E+ + ++NH ++A + E + L P + V DE Sbjct: 282 CPHSSYCRFASF--SRRWLSESYDFQISNHNYILADVVNRREGKKKLL-PYYNIAVFDEA 338 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H L D AR +C Sbjct: 339 HKLIDAAR----------------------------------------------QIYCTR 352 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA-KLTEMLRGLAELFLND 369 L E + +++L P RF +++E+C L+ K T + + F+ Sbjct: 353 LSE--NEIPKLIHLISP------ERFVDKSSQRQMMELCTGLSEKNTRLFQKTGGAFIQS 404 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 + S I L + +GM E +++ + S G T T + E +L Sbjct: 405 NQMENISRTIEEDRSTRLWIRDLIGMLEKLGRIFVTVKM-DSCGRVKTIRNTAQSIEDRL 463 Query: 430 HLWF----HCVGIRVSD-----------QLERLL----WRSIPHIIVTSATLRSLNSFSR 470 +++ + I SD +LER+L W + H I+TS T+ +F Sbjct: 464 NVFLSAKQNISWIEKSDSGGLEFCSLPRELERILYHDLWHTGVHSIITSGTISVGGNFDH 523 Query: 471 LQEMSG--LKEKAGDRFVALD--SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 + M+G L + R + + SPFN+ + + IP P I +E+ A Sbjct: 524 FKRMTGIDLLQPQNRRVMEVSKLSPFNYSQNAILYIPEELPFPDIHDEKYIEAISREIIH 583 Query: 527 KQVESKKHLGMLVLFASGRAMQR-FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGER 585 + H L+LF+S M+R F + +++ L + R ++E R R NG Sbjct: 584 LICATFGH--TLILFSSYWLMERIFYEVKQEIQSFPLFIMKRGRMDMIEKFR-RSGNG-- 638 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 VL S EG+DL GD+LS V I K+ F P+ SP++ E ++Y E+ + P Sbjct: 639 -VLFASDSAGEGIDLPGDILSSVIIVKLPF-PVPSPILEYERTKYDDFSQYVKEIIT-PG 695 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRL-LTKNYGKRLLDALPVFPI 692 L Q GR IR I D R+ + Y +L ALP P+ Sbjct: 696 MIIKLRQWFGRGIRRETDTAVFSILDSRVGIHGRYRDDVLKALPDMPV 743 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 175/722 (24%), Positives = 287/722 (39%), Gaps = 124/722 (17%) Query: 23 PDFIP--RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 PD +P R QR+M V + L+ EE L +EAPTG GKT YL P + ++K Sbjct: 238 PDLLPKPRPAQRRMFQLVEEALSREE--ILLLEAPTGTGKTKGYLYPVL----HQRKPTW 291 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRG--RYVCPRNLTALASTEPTQQDLL 138 V+T LQ Q + + +K + AA + +CP L L Sbjct: 292 VATHTKVLQAQAMEELRAVAQK---GYQVRAALVKSPQDTLCPDRL------------LE 336 Query: 139 AFLDDELTPNNQEEQ--------KRCAKLKGDLDTYK--WDGLRDHTDIAIDDDLWRRLS 188 AFL + + E+ A+ DL+ W L ++ R+ Sbjct: 337 AFLREARSGKPGEDVGAAIAVLLHYAAQRGHDLEALPAYWHFLEGFREVR------GRVG 390 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLD 248 T+ C R C + C + R +EA+++V N A ++ ++ E LP+ + L VLD Sbjct: 391 TNPDRC-RRECPFASACAYQAILRRREEAQILVTNQAYLLHSLLGEKALPEARPAL-VLD 448 Query: 249 EGHHLPDVARDALEMSAE----------ITAPWYRLQLDLFTKLVATCMEQFRP--KTIP 296 E HHL DVA +AL + + + P R L + + + R +T+ Sbjct: 449 EAHHLEDVATEALTLKVDGEGLRHLLEALANPSKRSGLLQERDYLKSLEDDLRASAETLA 508 Query: 297 PLAIP---ERLNAHCEELYEL-----IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI 348 A+P E L A+ E + + S + L L + + + + L E + Sbjct: 509 EEAVPKALEALKAYSERMERFLKRRGVGSPEHGLTLPLEPSWTRDEEYPL--LDREERHL 566 Query: 349 CQRLAKLTEMLRGLAE-------LFLNDLSEKTGSHDIVRLHRLILQMNRAL-GMFEAQS 400 Q L L + L GL + L L ++ + ++ + RL L+ R L G + Sbjct: 567 IQSLEALAKGLEGLLDAHPPPWPLLLREI--RPLLQELRQAIRLFLRRKRVLKGEADEAL 624 Query: 401 KLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV-GIRVSDQLERLLWRSIPHIIVTS 459 L RL PVT W H I V+ +LE LW + +++TS Sbjct: 625 HLTRLD--------PVTG------------TWSHLAEPIEVAAELEEKLWPAFRGVVLTS 664 Query: 460 ATL-----RSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 ATL F+ LQ GL +A + P++ + +++PR E Sbjct: 665 ATLAVPTETDPEGFAFLQRALGLPPQARAERLPPSLPYH---RAHLLVPRHLPE----AR 717 Query: 515 EQHIAEMAAFFRKQV-----ESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPR 569 E + +++ + + L + + A ++ L+ + LR L + + Sbjct: 718 ESTLPRFQRLLHRELRLVLGQVPRTLTLFTSLSRLEAAKKALEDLPHLRAPLTRREREDT 777 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 R R E +G +SF EG+DL L V++ ++ F P SP++ Sbjct: 778 VRFA-----RSNPTEPLAALGSRSFMEGVDLPH--LRVVNLERLPF-PYPSPLLKRRMAL 829 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH---GCWGEVVIYDKRLLTKNYGKRLLDA 686 P+E LP A + +Q GRLIR G +++DK+LL +Y + A Sbjct: 830 AYERGLDPWEDYYLPKAVLSFVQAFGRLIRDDRQVAGDGAFILWDKKLLHADYQELFYRA 889 Query: 687 LP 688 LP Sbjct: 890 LP 891 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 17/248 (6%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P+F R Q M V + G++LA+EA TGVGK+++YL+P + A++ T+ V+ Sbjct: 318 PEFEARDEQVTMAEAVNDAFS--TGKNLAVEAGTGVGKSMAYLVPAVFTAQKNGITVGVA 375 Query: 83 TANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 T AL DQ+ +LP L + + + + G Y+C R + L T P + + Sbjct: 376 TKTNALLDQLMHHELPRLSSAVGGISYCSLKGFSHYLCLRKVERLMQTGPHMKTV----- 430 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR--LSTDKASCLNRNC- 199 E + L G L + D + +D L R ++T CL + C Sbjct: 431 ------QDRELSQAPALAGVLSFIEQSEYEDIDGMRVDYRLMPRYEITTTSHDCLRKKCP 484 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 +Y + C +R + + A++VV N L+ + ++ L P V+DE H+ AR Sbjct: 485 FYGQRCYVHGSRFKAEAADIVVTNQTLLFCDVAADGGLL-PSIRYWVIDEAHNAEGEARR 543 Query: 260 ALEMSAEI 267 AL S E+ Sbjct: 544 ALGSSIEL 551 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 147/361 (40%), Gaps = 42/361 (11%) Query: 337 AMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF 396 A+ + +++++ CQ + L E ++G A + + S D++ LI+ F Sbjct: 696 ALVDASEKLIKACQEMVGLMEDVKGAAAIQRDIASMALYLKDVINSIELIV--------F 747 Query: 397 EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 E LA+ ++ R E+ L L V ++L L+ I+ Sbjct: 748 EGSDTFAYSVQLARKK----NTYSRRSEKLDALML-------NVGNELAERLYARTHSIV 796 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDR---FVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 TSAT+ N+F GL E+ G+R + L S ++ E KI + EP N Sbjct: 797 FTSATMTIANAFDSFFTALGLSEE-GERATVHLQLGSSYDFDENMKIYVVEDMPEP---N 852 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRL- 572 + +++A + + L LF + R M+R V ++GD R Sbjct: 853 DARYLAALEQLL-IDIHRASAGSTLSLFTNRREMERAHSTV-----QAALKGDGLRVVCQ 906 Query: 573 -----VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 V+ R E L L+SF EG D G L V I K+ F P+ Sbjct: 907 KWGVSVKGLRDEFIADEHLSLFALKSFWEGFDAPGATLKTVVIPKLPFSKPTDPLSCARA 966 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 + ++ + LP A Q GRLIRS G +++ D+RL+TK YGK L ++ Sbjct: 967 Q----MDAQAWSHYVLPQAVIETKQAAGRLIRSAHDTGSLILADRRLVTKGYGKVFLKSM 1022 Query: 688 P 688 P Sbjct: 1023 P 1023 >UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPR9_9CLOT Length = 998 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 146/661 (22%), Positives = 291/661 (44%), Gaps = 82/661 (12%) Query: 45 EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII 104 E+G+ +EAPTG+GK+++YL+P +Q+ +++ST LQ+Q+ KD+P L + + Sbjct: 255 EKGKITIMEAPTGLGKSMAYLLPAAIYTHLKQQKVIISTNTKGLQNQLVDKDIPNLLEAL 314 Query: 105 P---DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKG 161 D+ +T G+ Y+C + + L+ ++ KR KG Sbjct: 315 NLKRDVSYTLIKGKSNYLCFDRFGDI-EYPVDMKTLVGYV----------YLKRLMMEKG 363 Query: 162 DLDTYKWD-GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVV 220 + + + + ++ L + + D C C Y C + ++EA+++ Sbjct: 364 IGEIEEISPAIMEKFNLGF---LINQCNCDSELCDVGACRYKDRCYYAAKVEALKEAQLI 420 Query: 221 VANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFT 280 V NH+L++ ++++P +V+DE H+L A DA E +A ++ + + +++ Sbjct: 421 VVNHSLLL-KWPYKSIVPLEN---IVVDEAHNLTQEAYDAFE-NALVSYEFEKYLKEIYN 475 Query: 281 K-----LVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHR 335 + + + T+P + + ++ + AS N + +G ++ Sbjct: 476 SPEKSGYLYYLSRRAKKDTLPLSEVESCIEQCIRQMANIKASFENYIT---QSGISKDYN 532 Query: 336 FAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS------EKTGS--HDIVRLH---R 384 + L I AK++ ++R L E DLS EK S DI L R Sbjct: 533 IK------DHLNINN--AKMSFIIRYL-EYLKEDLSSLNISLEKAVSVLKDISNLQKDKR 583 Query: 385 LILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW-FHCVGIRVSDQ 443 L + M + G+ + S+L A + QS + E + W + + VS Sbjct: 584 LKILMEKVEGI-NSYSRLLE-AVINQSEEG----YCFYFEVDKFFKWWKISSIPLDVSGA 637 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP-----FNHCEQG 498 + S+ + SATL + + ++ L+ G+ ++ P F++ +G Sbjct: 638 FYEKVLSSVKSCLFISATLSTDSGYNSLRNTLGINIAKSQNKEIVEVPPIKPVFDY--KG 695 Query: 499 KIVIPRM-RVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD- 556 K VI M ++P ++ EM F K + + + +++LF S + + F + T+ Sbjct: 696 KSVIYAMENIDP--NDIGAFSEEMKKFVIKLLHNVEG-NIIILFTSRKRLDAFKEEATES 752 Query: 557 LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFP 616 LR + G + Y ++ + + + ER +L+G + + EG+D+ GD ++ V + K+ P Sbjct: 753 LRTL----GIKVVYGKKDIEKLK-SRDERYILLGSKGYFEGIDIPGDAMTTVILDKV--P 805 Query: 617 PIDS--PVV--ITEGEWLKSLNRY-PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 I+S P + E + + N + + + P S +L Q GR+IR+ +G++ I Sbjct: 806 NINSKEPFYKSLIENQVERGKNYWQAYAKVNFPIVSIDLKQIYGRIIRTEYDYGDLFIMS 865 Query: 672 K 672 K Sbjct: 866 K 866 >UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI55_9BACT Length = 257 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 15/238 (6%) Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 +TSA+L +F ++ GL + R + +DSPF+ Q +++P EP ++ E Sbjct: 1 MTSASLAVDKNFDFQRKNIGLSDNERFRGLIVDSPFDFRTQSLLLVPSDMPEPGREDYED 60 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR-------FLDYVTDLRLMLLVQGDQPR 569 +A + + S + LVLF S ++ R L+ + + + L QG+ PR Sbjct: 61 SLARILS----DSISVTNGNALVLFTSYSSLNRVYEKTGKILERIGAVPVSLFKQGEMPR 116 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L+E K + N SVL SF EG+D+ GD L V I ++ F PV + E+ Sbjct: 117 SLLLEKF-KTLGN---SVLFATDSFWEGVDIPGDSLRMVVICRLPFKVPTDPVTEAKIEY 172 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 ++ + F LP A Q GRLIR+ G V++ DKR+++K YGK ++++ Sbjct: 173 MERQDIDSFREYILPHAVLRFKQGFGRLIRTKTDRGVVMVLDKRIVSKYYGKFFINSV 230 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 114/248 (45%), Gaps = 35/248 (14%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P + PR Q M +V L G H IEA TGVGK+++YL+P AR T+ ++ Sbjct: 285 PTYEPRDEQIAMALEVRDALV--TGTHRVIEAGTGVGKSMAYLVPFAEAARRNNITVGIA 342 Query: 83 TANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTE---PTQQDLL 138 T + L DQ+ +LP L +++ L F A G Y C R L ++ + T++D Sbjct: 343 TKSNNLADQLMYHELPKLAEQLDGGLSFCALKGYDHYPCLRKLERMSRGQVEITTKRDPA 402 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 D LT C GDLD+ G+R WR ++ + +R Sbjct: 403 ----DTLTAVAVIMAYVCQSADGDLDSL---GIR-----------WRSVNRPDFTTASRE 444 Query: 199 CYYYRECPFF-------VARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDEG 250 C R CPFF ARR A+VVV NH+L+ + +E +LP ++ V+DE Sbjct: 445 C-ARRLCPFFPDKCLVHGARRRAAHADVVVTNHSLLFRNVAAEGRILPPIRH--WVIDEA 501 Query: 251 HHLPDVAR 258 H + AR Sbjct: 502 HSIEREAR 509 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 101/252 (40%), Gaps = 26/252 (10%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 I SAT+ SF GL DR A S H + M V + D + Sbjct: 709 IFASATMTVSKSFEHFNHAVGL-----DRIGASTSSSLHLDSSYDFDSNMAVVVAGDIPD 763 Query: 516 QHIAEMAAFFRKQVESKKHLGM----LVLFASGRAMQRFLDYV------TDLRLMLLVQG 565 E ++V HL M L LF + R M+ V L L + Sbjct: 764 PRDRESYLTALERVLFDAHLAMGGSVLTLFTNRRDMEDLYARVEPKMARAGLELNCQQRN 823 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 PR RL R R N S L L++F EG D G+ L V I K+ F P+ Sbjct: 824 SSPR-RL----RDRFINEPTSSLFALKAFWEGFDASGETLRCVIIPKLPFSSPTDPLSCE 878 Query: 626 EG-EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684 ++ RY SLP A + Q GRLIRS G +++ D RL+TK YGK+ L Sbjct: 879 RNLREDRAWARY-----SLPEAVLEVKQAAGRLIRSSTDCGVLILADPRLVTKGYGKKFL 933 Query: 685 DALPVFPIEQPE 696 +LP ++ E Sbjct: 934 TSLPTSSYQRIE 945 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 123/265 (46%), Gaps = 13/265 (4%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 + ATL + SF L G E F+ L SPF++ +Q K+++ + D + Sbjct: 673 VFVGATLTAERSFDFLTAQLGYHELPESSFLKLRSPFHYRDQAKVLVA-TDAPHAADVSD 731 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAM----QRFLDYVTDLRLMLLVQGDQPRYR 571 A+ A +Q+ ++ +VLF S + QR + LL QG Sbjct: 732 DAYADYLAMAIEQLADNQY-QTIVLFNSLSVIEAVYQRLIHRPIAGHKELLAQGVTGSAE 790 Query: 572 LVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 + KR A GE+S+L+G SF EG+D LL V + ++ F ++P+ ++ Sbjct: 791 KIA---KRFAVGEQSLLLGAASFFEGIDYPDRLLEIVILTRLPFDAPEAPITKARYRQIQ 847 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP-VF 690 PF +LP A L Q GRLIR+ G +I D R +T YGK++ +LP + Sbjct: 848 LSGGDPFTEDALPRAILRLRQSFGRLIRTETDRGAFIILDPRFITTAYGKKMQKSLPNIK 907 Query: 691 PIEQP--EVPEGIVKKKEKTKSPRR 713 P+ P ++P G ++ ++KS R Sbjct: 908 PMTLPLTDIP-GYIRMWLRSKSANR 931 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 105/247 (42%), Gaps = 48/247 (19%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P + R Q +M+ D T A + L IEA TG+GKTL YL+P +A EQK LVV+ Sbjct: 248 PRYRFRKAQAKMM-DAIFTHAQKTEIPLFIEAGTGLGKTLGYLLPYAYLATPEQK-LVVA 305 Query: 83 TANVALQDQIYSKDLP----LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTE-PTQQD- 136 T+ + LQ Q+ ++ +P LL + +P ++ + Y+ A E PT+Q Sbjct: 306 TSTLVLQTQLITQAIPELDALLGRTLPTVELKSP---QHYLDLNKFAASLHQEGPTRQTQ 362 Query: 137 -----LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK 191 LL +L T GDLD R I R S D Sbjct: 363 LLQMKLLVWLTQTTT--------------GDLDELHLTTYRAPLFAEI------RHSGDV 402 Query: 192 ASCLNRNCY---YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLD 248 + Y +YR + ++ +A VVV NHA + ++ LP K LV+D Sbjct: 403 GTPFINPFYTFDFYRRL-----QAKLADAVVVVTNHAFLSRHADT---LPF-KRPFLVVD 453 Query: 249 EGHHLPD 255 E H D Sbjct: 454 EAQHFAD 460 >UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Clostridium RepID=A6LV05_CLOB8 Length = 976 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 157/682 (23%), Positives = 283/682 (41%), Gaps = 101/682 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY-LIPGIAIAREEQK------TLV 80 R Q++ + + E+G + IEAPTG GKT +Y +I I +QK + + Sbjct: 262 RKDQKEFAKKIRENF--EKGERIFIEAPTGSGKTFAYVIIAAIETYLNKQKNRKDDASFI 319 Query: 81 VSTANVALQDQIYSKDLP-LLKKIIPD--LKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 +ST LQ+Q+ +D+P +LKK+ D L + A G+G Y+C + + ++ Sbjct: 320 ISTNTKELQNQLIERDIPTILKKLRLDDKLNYGAMKGKGNYLCIERINRCEEFQMDEKGN 379 Query: 138 LAFLDDELTPNNQEEQKRCAKLK-GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 LA L ++ C GD++ + ++ H ++ D R ++ D C Sbjct: 380 LALL---------FLRRLCESGNYGDIENINY-LVQKHLEL---DKYIREVNCDSEQCKL 426 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV 256 C R C E+ E + V NH+L+ +E K +++DEGH+L + Sbjct: 427 DKC--TRACFLRKRYNELPEENITVINHSLLACWPYTEK----KKINHIIIDEGHNLMEK 480 Query: 257 ARDALEMSAEITAPWYRLQLDLFTK-------LVATCMEQFRPK-TIPPLAIPERLNAHC 308 D + E ++ + LDL K ++ T F + TI I N Sbjct: 481 CYDFF--AEEFSSAEFIQLLDLIEKGHPSIIAMLLTLNASFGYRETIEKDKIVYLAN--- 535 Query: 309 EELYELIASLNNILN----LYMPAGQEAEHRFAMG-ELPDEVLE-----ICQRLAKLTEM 358 ++I ++N +LN L + +G E+ F +P E L+ I ++ L E Sbjct: 536 ----DIIVNINILLNDFRSLRLISG---EYNFTTEFFIPREDLQGITNAIGSEISVLKES 588 Query: 359 LRGLAELFLNDL-------SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 + L ++ LND E G D L I ++ A + L +S Sbjct: 589 IYPLYKM-LNDYIYNITLDDEIDGDIDHKNLSDYIAKLKSAFDV---------LDKFLES 638 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 S E + + V + V + + + + + SATLR NSF+++ Sbjct: 639 SVFYAKILEVDSEYKSFI---LKNVPLNVGEMVNEHMLKDVKSTTFLSATLRIENSFNKI 695 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF-FRKQVE 530 ++ G +EKA + + F+ ++ KI + + +E +I ++ F + ++ Sbjct: 696 KKHLG-QEKAKEFIIP--PTFDLKKRTKIFALK---DVGRYDEPSYIKNVSKFIYNTALK 749 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLV- 589 H+ LVLF + L LL +G + + + + + + R V++ Sbjct: 750 INGHI--LVLFNNNARRT-----AVSEELELLTRGTKIEVHMSKKSVRALNDKNRQVIIL 802 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 G + F EG+D+ GD LS V + KI + P++ + + + ++ + P Sbjct: 803 GSKGFFEGIDVPGDALSCVMLDKIPNYSPEYPIL----RAITTYQKKGYQDVNYPQVCIK 858 Query: 650 LIQQVGRLIRSHGCWGEVVIYD 671 Q GRLIRS +G +I D Sbjct: 859 AKQIYGRLIRSTFDYGYFIILD 880 >UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n=12 Tax=Actinomycetales RepID=Q47MW9_THEFY Length = 706 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 19/235 (8%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M VA + E HL ++A TG GK+L YL+P + A T+VVSTA +A Sbjct: 51 RDGQATMARSVAAAIDSRE--HLVVQAGTGTGKSLGYLVPALRHAVAANATVVVSTATIA 108 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ+Q+ +DLP L + + L + GR Y+C R + A+T P + +L D Sbjct: 109 LQNQLIGRDLPRLTEALEPLLGRRPVYAILKGRRNYLC-RYRLSQAATGPEEAEL---FD 164 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYY 201 L + + +R + + T G RD + D WR++S C+ + C Sbjct: 165 PHLLSSLGRQVRRLHEWAEETLT----GDRDDLTPGVSDLAWRQVSVGANECIGPQMCPV 220 Query: 202 YRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVLDEGHHLPD 255 +C +AR E A++VV NHAL+ + A++ +LPD + LL++DE H L D Sbjct: 221 SDDCFAELARAETIGADLVVTNHALLAIDAVQGYRLLPD--HDLLIVDEAHELVD 273 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 12/230 (5%) Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 R + + SPFNH G + I P ++ +++ EMA + LG LF+ Sbjct: 483 RAIDVGSPFNHARSGILYIATHLPPPGRESLHPEYLDEMAELI--DAAGGRTLG---LFS 537 Query: 543 SGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 S RA + + + L +L QGD LV+ + A E + L G S +G+D+ Sbjct: 538 STRAAVHAAEELRERLPYPILCQGDDSTGHLVQ----QFAADEATCLFGTLSLWQGVDVP 593 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 G L V + +I FP D P+ + + F + A+ L Q GRL+RS Sbjct: 594 GPALQLVIVDRIPFPRPDDPLASARQRAIGAQGGNGFLEVAATHAALLLAQGTGRLLRSV 653 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVPEGIVKKKEKTKS 710 G V + D RL T YG L +LP + P+V +++ + S Sbjct: 654 HDKGVVAVLDPRLATARYGAFLRASLPPYWGTTDPQVARAALRRLHEAAS 703 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 117/263 (44%), Gaps = 43/263 (16%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F R+ Q M +V L R L EA TG+GK+++YL+P A++ T+ ++T Sbjct: 294 FETRSEQVSMSVEVRNALVTSSHREL--EAGTGIGKSIAYLLPEALFAQKNDVTVGIATK 351 Query: 85 NVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 AL DQ+ + DLP L + +P+ L F + G Y C + A E L +D Sbjct: 352 TNALTDQLVTHDLPALARALPNGLSFCSLKGYEHYPCLHRVDRAALEELP----LTLIDQ 407 Query: 144 ELTPNNQEEQK-----------RCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR-----L 187 E +N C GDLD G+R WR + Sbjct: 408 EGRSSNSVASDMLTAIAVIYAYACQSADGDLDAL---GIR-----------WRSVPREMV 453 Query: 188 STDKASCLNRNC-YYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLL 245 + A CL C YY EC AR+ ++VVV NH+L++ + ++ +LP ++ Sbjct: 454 TIKAAECLRSKCPYYPHECFVHGARKRAGSSDVVVTNHSLLLRNVAADGKILPPIRH--W 511 Query: 246 VLDEGHHLPDVARD--ALEMSAE 266 V+DE H AR A+E+SA+ Sbjct: 512 VIDEAHGFEAEARHQWAIEISAK 534 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 18/240 (7%) Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGD-RFVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 ++ TSAT+ + FS + GL + + + + LDS F++ + + P+ Sbjct: 726 VVFTSATIAVGDDFSHFEHAVGLDRGSFEHKSLHLDSSFDYENHMGVFVAEDMPTPTDPG 785 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQGDQPR 569 + ++ F V+ +L LF + R M+R + + ++ L L Q Sbjct: 786 YLDALEKL--LFDVHVQMGG--SVLTLFTNRRDMERLYEALEPRLSEYGLTLACQERSSS 841 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT-EGE 628 R + R++ + L L+SF EG D GD L V I K+ F + P+V E Sbjct: 842 ARRI---REKFLAEKNLSLFALKSFWEGFDAAGDTLRCVVIPKLPFASPNEPLVKEREVR 898 Query: 629 WLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 ++ RY SLP A Q GRLIRS G +V+ D RL++K YG L +LP Sbjct: 899 EDRAWWRY-----SLPEAVIATKQAAGRLIRSAEDKGVLVLADSRLVSKRYGSSFLKSLP 953 >UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGW8_9BACT Length = 591 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 44/248 (17%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRH--LAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 + D +PR QR D A + + +EAPTG GKT +YLIP + R Sbjct: 11 LSDILPRYRQRDAQLDAANFIFDSMKTYQPAVVEAPTGSGKTFAYLIPAFELGRR----T 66 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF-GRGRYVCPRNLTALASTEPTQQDLL 138 ++ST L QI KD+ + +I D +F A GR Y C +L P Sbjct: 67 IISTKTKQLMSQIAGKDIEAVNRIFGDDRFVAVLKGRRNYFC--HLRFFRFVYP------ 118 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW-----RRLSTDKAS 193 NQ +R + G + D I + ++ +STD Sbjct: 119 ----------NQGRFERVVEWYG--------SVVDQEIIDVPIGVFSPHEIEHISTDSWQ 160 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESE---AVLPDPKNLLLVLD 248 C C +Y C F+ A+ + A++V+ NH L+M+ A++SE A + D + +++D Sbjct: 161 CTASKCEFYDICSFYRAKEQANSADIVITNHYLLMSDFALKSENEHASIFDFAD-HIIMD 219 Query: 249 EGHHLPDV 256 E H +PD+ Sbjct: 220 EAHSIPDI 227 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 26/269 (9%) Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 E+ G + L + + + +D+L + + + SATL +FS +G +E+ Sbjct: 328 EQERGDILLQY--IPLNAADKLREGMKNACLSPVFVSATLSGKGNFSYFLSETGYEEEEI 385 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + ++L+ F+ +QG++++ D +E AF+ + K +++ + Sbjct: 386 GK-MSLEPVFDMAQQGRLLVQ--------DCDE-------AFYEELALKAKGSVLIICNS 429 Query: 543 SGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 GR ++ L ML Y ++ K + ++ VG F EG+D Sbjct: 430 VGRMLK--------LTKMLKELCPGRVYSQRDIDIKDTEGLKDTIFVGCAVFREGMDFAH 481 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 +S V + K+ F D V+ + E ++ + PF LP A Q VGRL+R Sbjct: 482 TGISYVVLDKLPFEYPDDLVLKEQAESVRKKGQEPFMDYFLPRAVIYYRQAVGRLLRHED 541 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 G V+ D+R+ TKNYGK L P Sbjct: 542 DKGVWVVLDRRIDTKNYGKYFATVLKDVP 570 >UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=A6BD56_9FIRM Length = 658 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 121/266 (45%), Gaps = 9/266 (3%) Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 +++ + HL F V + L+ LW I+TS TL++ N F+R ++M+GL+++ G Sbjct: 376 QQDSRGHLTFMAVNREIPKYLDTTLWSQGFPAILTSGTLKAGNGFARTRQMTGLEKETGV 435 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 R +SPF + E + IP ++P + ++A R V S + LVLF S Sbjct: 436 RECVAESPFCYQENCLLYIPE-HLKPRKKGSREEAEQLAGQIRDLVCS-TYGHTLVLFTS 493 Query: 544 GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 M + D +VQ +R + R E +VL S EG+D GD Sbjct: 494 YTLMGNVQQLLRDQIPFPMVQ----VWRNSQEEIARFKKMENAVLFAAGSCWEGVDFPGD 549 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 ++S + I K+ F D P+ + E +SL Y + +P L Q GR IR+ Sbjct: 550 MVSSLIIVKLPFSVPD-PIHEAQREQYRSLKSY-IQTIVVPDMQKKLRQGFGRAIRTEQD 607 Query: 664 WGEVVIYDKRLLTKN-YGKRLLDALP 688 V I D R K Y +L+ALP Sbjct: 608 TCVVSILDHRATKKGRYRSDVLEALP 633 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 20/182 (10%) Query: 520 EMAAFFRKQ---VESKKHLGMLVLFASGRAMQRFLDYVTDLR------LMLLVQG-DQPR 569 + + + KQ V + + LVLF S +Q+ +++ + L LL QG R Sbjct: 768 DFSNYLAKQLVDVTTSVNQNTLVLFNSLDTIQQVYNHIQSNKKFQQSSLTLLAQGVTGTR 827 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI---TE 626 ++ +KR+ + + V++G SF EG+DL GD Q+ + IA P D P + E Sbjct: 828 GKI----KKRMQSEDGLVVLGAASFWEGIDLPGD---QLRLLIIARLPFDRPNTVLQKAE 880 Query: 627 GEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDA 686 + S + PF +LP A L Q +GRLIR+ +G V+IYD R+LTK+YGK L Sbjct: 881 EAVINSEGKQPFYQSTLPKAVLRLRQGIGRLIRTPTDYGAVIIYDARILTKSYGKTLRKM 940 Query: 687 LP 688 +P Sbjct: 941 MP 942 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 26/207 (12%) Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTA 111 EAPTG+GKTL +L+P + + QK ++V+ + LQ Q+ +L I+P +++ + Sbjct: 315 EAPTGMGKTLGFLLPYAYLTNQNQKKVIVTEPTITLQTQVTETVNTVLHDILPFEVRAVS 374 Query: 112 AFGRGRYVCPRNLT-ALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 GR +Y+ ++ +L E T L F+ ++ E ++GD D Sbjct: 375 LKGRHQYLNLQSFKRSLQIDEGTTS--LQFIKAQILVWLTE------TMRGDFDELHL-- 424 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREI--QEAEVVVANHALVM 228 + +LS + + Y Y F R+ + Q A+ ++ NH+ + Sbjct: 425 ------MNAQQKFIAKLSQNANNPAGSPFYGYE----FFERQYVLAQNAQFLIVNHS-YL 473 Query: 229 AAMESEAVLPDPKNLLLVLDEGHHLPD 255 A +E + K LV+DE +LPD Sbjct: 474 AEYANELGTSENKP-YLVIDEAQNLPD 499 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 27/253 (10%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 AL++ F+ RA Q + VA+ L+ +G LA+EA TG GK+L+YL P A Sbjct: 284 ALEQAGEGFMSRAAQLDVAQAVARALS--DGGQLAMEAGTGTGKSLAYLAPAALFAARNG 341 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEP--- 132 + + V+ LQDQ+ KDLP L + + G+ Y+C R EP Sbjct: 342 RKVGVAPHTKTLQDQLLEKDLPRLHRATKGAFGYALLKGQTNYLCRRRALEATRVEPGMG 401 Query: 133 -TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYK-WDGLRDHTDIAIDDDLWRRLSTD 190 + + A+L L + + GDLD W R+ + + L + ++ Sbjct: 402 HSARAPRAYLRAYLRRSGE----------GDLDRLSHW--FRERFPVLM--ALVPAVRSE 447 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG 250 ++ L C ++ C + A + +EA+V++ N +L A PK LVLDE Sbjct: 448 ASTTLGEKCPHFHRCFYHSAVAQAREADVLIINQSLAFAWPARY-----PKLDHLVLDEA 502 Query: 251 HHLPDVARDALEM 263 H + DVA AL + Sbjct: 503 HEVEDVATTALTL 515 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 109/252 (43%), Gaps = 27/252 (10%) Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAG---DRFVALDSPFNHCEQGKIVI----PRMRV 507 +++ SATL + + F + GL + G R V +PF EQ +V+ PR Sbjct: 720 LVLASATLGTGDGFPFVLRRLGLDGRGGRPAPRLVRAATPFKLHEQALVVLVTDAPRAHE 779 Query: 508 EPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD----LRLMLLV 563 E ++ I+ +A +V L LFAS R M+R V L + +L Sbjct: 780 EAFVEWASLRISGLAQTMGGRV--------LGLFASTRRMERVGTSVRGRLDPLGIEVLR 831 Query: 564 QGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 Q L K +VL+G +SF +G+D+ G + V I K+ P P+V Sbjct: 832 QSRGHSRSLAARQEKDTG----TVLLGTKSFWQGVDIPGRGVGCVFIDKLPLEPAMRPLV 887 Query: 624 ITEGEWL-KSLNRY-PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGK 681 E L +S Y F LP A L Q VGRLIR+ G V+I D +Y Sbjct: 888 AAREEPLSRSGGEYMGFLHYRLPRALLQLRQGVGRLIRATTDRGVVIISDPG--HPSYRG 945 Query: 682 RLLDALPVFPIE 693 L++AL + +E Sbjct: 946 HLMNALEGYRVE 957 >UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIV9_ARTCA Length = 749 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 180/746 (24%), Positives = 289/746 (38%), Gaps = 144/746 (19%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG-IAIAREEQ 76 L IP R Q ++ D+ + H+ APTGVGK+ S L P +A A+ +Q Sbjct: 12 LSTGIPTADARPGQVALLDDIEAAI--RATGHVCGVAPTGVGKSFSLLAPAMVAAAKYDQ 69 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRN-------L 124 +T ++ST ++AL QI KD P+ + K G YVC ++ L Sbjct: 70 RT-IISTESLALLSQILLKDAPVAAAACEKVTGTRPKVAVLKGFSNYVCSQSARDAAEQL 128 Query: 125 TALASTEPTQQDLLA-----------FLDD------ELTPNNQEEQKRCAKLKGDLDTYK 167 T P+ L + FLD P A GD +Y Sbjct: 129 TDTVGQRPSLPSLRSKLKRLANQKNVFLDGRPFDAANGVPLLLWALSLAADQAGDKQSY- 187 Query: 168 WDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHA-L 226 +G+ +LW +S + C+ C + C AR + EA++VV NH+ L Sbjct: 188 -EGV-------TTPELWDAVSVGPSECIGDTCPIFDLCKPRAARAKAAEADIVVTNHSML 239 Query: 227 VMAAMESEAVLPDPKNL----LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKL 282 + A + V+ K L ++++DE H LP R A ++E++A + TK Sbjct: 240 AVQAAKGVPVIIGNKTLGEFHIIMIDEAHALPANVRSA--GASEVSA----AAVMSLTKS 293 Query: 283 VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 V+ +++ P + + NA EL + +A + Y G+ Sbjct: 294 VSRTLDESDPAV---GRLIKEGNALAIELEDELAEMAK----YTKPGEVC---------- 336 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI---VRLHRLILQMNRALGMFEAQ 399 ++ E + +M+ G A N L + S +I ++ RL +++ +G Q Sbjct: 337 -KIKETADPVETTGDMMIGWARSVKNALDGVSKSKNIQSKLKAKRLAGRLDAFIGAV-GQ 394 Query: 400 SKLWRLAS---LAQSSGAPVTK-----WATREEREG-----QLHLWFHCVGIRVSDQLER 446 KL R+ + + Q + K W Q +LW V + D++ + Sbjct: 395 VKLHRIGTARWIEQKTPPANAKVQTPYWCANASPVNISGLLQANLWTAPVMVDEEDEMVQ 454 Query: 447 LL----------WRSIP-HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHC 495 + + P +I SATL SR GL + VA SPF+ Sbjct: 455 AMKEAGEPIEEETETYPMTVIAVSATLP-----SRFGYQVGLTAEN----VAYPSPFDKA 505 Query: 496 -EQGKIVIPRMRVE----------PSIDNEEQHIAEMAAFFRKQVE-SKKHLGMLVLFA- 542 + + IP++ E P + A +K VE + ++G ++ + Sbjct: 506 YDDSLLYIPKLTPEEIPEMFPGWRPGTKGKFNGALHQAWATKKNVELVEANMGSALILSA 565 Query: 543 ---SGRAMQRFLDYVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 +G+A L R + Q D +L L R V +SVLVG +SF G+ Sbjct: 566 NSTAGKAYAAALRRAAKGRWNVYSQWDGLSTQQLTNLWRDDV----KSVLVGTKSFMTGV 621 Query: 599 DLKGDLLSQVHIHKI---AFPPIDSPVV------ITEGEWLKSLNRYPFEVQSLPSASFN 649 D KG S V I +I A P+D V + G+W Y + A+ Sbjct: 622 DAKGRTCSLVTIDRIPRAAGNPVDDARVEAIMDALQIGKWAADTYVY------VSDAALL 675 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLL 675 L Q +GRLIRS +G I D R+L Sbjct: 676 LEQALGRLIRSVSDFGMAAILDPRML 701 >UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2RPW4_RHORT Length = 927 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 169/722 (23%), Positives = 276/722 (38%), Gaps = 106/722 (14%) Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-----L 107 EA TGVGKTL Y+ P A + T+ +ST LQ Q+ + L ++ PD Sbjct: 252 EAGTGVGKTLGYIAPASLWAERNEGTVWISTYTRNLQRQLDGE----LDRLYPDPAEKMR 307 Query: 108 KFTAAFGRGRYVCPRNLT-ALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY 166 K GR Y+C N A+ T Q+ +A L + + + GD + Sbjct: 308 KVVIRKGRENYLCLLNYEEAVGRLGATPQEAVAL---GLMARWIKATRDGDMVGGDFPGW 364 Query: 167 KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHAL 226 D L +A+ D + C+ +C +Y C A R + A +VVANHAL Sbjct: 365 MVDILGRERSLALADR--------RGECVFSSCDHYDRCFIERAVRRARRARLVVANHAL 416 Query: 227 VMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALE--MSAEITAPWYRLQL-------- 276 V+ + D + +LDEGHH+ D A A +S A R L Sbjct: 417 VLIQAALGGIDDDSRPTRYILDEGHHVFDAADSAFSAHLSGFEGAELRRWLLGAEEGHRS 476 Query: 277 -------------DLFTKLVATCMEQF-RPKTIPPLAIPERLNAHCEE--LYELIASLNN 320 D L A E + +P +RL + +A+ Sbjct: 477 RARGLRRRVDGLYDQAGPLAADLEEALDGARALPGPGWAQRLAGGTGRGAIERFLATART 536 Query: 321 ILNLYMPA-----GQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTG 375 + PA G E + R + EL D+ + L L L+ + L E+ Sbjct: 537 QVLARAPASESAHGLETDLRPPLPELLDDARAVVAALTDLVVPLKAFVRALVKRLDEEAD 596 Query: 376 SHDI---VRLHRLILQMN-RALGMFEAQSKLWR--LASLAQSSGAPVTKWATREEREG-Q 428 D R+ + + RALG +++WR AS+A+ A W E EG + Sbjct: 597 ELDTPTRARIESVARSIERRALG----PAQVWRDMAASIAEDPPADFVDWLELERSEGRE 652 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV-- 486 + + H I + L ++VTSATLR + +S + +AG + Sbjct: 653 VDIGMHRHWIDPTRPFAATLAARAHGLVVTSATLRDGSGDGEADWLSA-EARAGAPHLGT 711 Query: 487 -----ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 ++ SPF++ ++++ D + + +++A +R+ + G+ + Sbjct: 712 PAIRASVPSPFDYPATTRVLV-------ITDVKRDDLDQVSAAYRELFRAAGGGGLGLFT 764 Query: 542 ASGR---AMQRFLDYVTDLRLMLLVQGDQPR--YRLVELHRKRVANGERSVLVGLQSFAE 596 A GR R + L L LL Q L+E+ R E + L+G + + Sbjct: 765 AIGRLRAVHARIAPALDALGLPLLAQHVDAMDISTLIEIFRAE----EDACLLGTDAVRD 820 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D+ G L + ++ +P D I K++ ++ + A L Q GR Sbjct: 821 GVDVPGRSLRLIVFDRVPWPRPD----ILHKARRKAMGGSLYDDR---IARLRLKQAFGR 873 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP----IEQPEVPEGIVKKKEKTKSPR 712 L+R G G V+ D RL ++ G FP IE+ + + + SPR Sbjct: 874 LVRRAGDRGVFVMLDSRLPSRLGG--------AFPEGVVIERVGLASAVAIVAQSVGSPR 925 Query: 713 RR 714 R Sbjct: 926 GR 927 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 24/250 (9%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 ++ PR Q+ M +V + +L +EA TGVGK+++YL+P A + ++T Sbjct: 294 NYEPRIEQKIMAEEVLSAFS--TSNNLVVEAGTGVGKSMAYLVPAAVTALRNNIPIGIAT 351 Query: 84 ANVALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 AL DQ+ K+LP+L K + +LK A G Y C R ++ + S Sbjct: 352 KTNALLDQLVYKELPMLAKALEAEGAGELKHVALKGFSHYPCLRRISHVVSDGAHMV--- 408 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR--LSTDKASCLN 196 E+ + A + ++ ++D D + +D R ++T CL Sbjct: 409 -----EIAGQQYSQATSIAAILSYIEQTEYD---DIDALKLDYRTLPRYAITTSSRECLR 460 Query: 197 RNC-YYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLLVLDEGHHLP 254 + C ++ C ARR+ + A VVV NHAL + ++ +LP K ++DE H Sbjct: 461 KRCPFFGTYCFVHGARRQAEHAHVVVTNHALFFRDLAADGNLLPHAK--FWIVDEAHGAE 518 Query: 255 DVARDALEMS 264 AR AL ++ Sbjct: 519 AEARKALAIN 528 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 21/272 (7%) Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK--EKAGDRFVALDSPFNHC 495 + + +L+ L+ ++ SAT+ + F + GL E + + L S +++ Sbjct: 717 VDIGQELDETLYERTQSVVYASATISISDDFQAFNQALGLNASEASRSKECLLGSSYDYN 776 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 ++ + EP N +++A + + +++ ML LF + R M++ D V Sbjct: 777 HHMRVFVLNDMPEP---NNARYMARLQDMLLRAHLAQQG-SMLTLFTNRREMEQCFDAVN 832 Query: 556 ------DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 DLRL+ G V+ R + L L+SF EG D G L V Sbjct: 833 PELKANDLRLVCQKWGVS-----VKGLRDDFLADKHLSLFALKSFWEGFDAPGATLRGVI 887 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I K+ F P+ + +R + LP A + Q GRLIR+ G +++ Sbjct: 888 IPKLPFAKPSDPLSCERS----ARDRSAWAHYVLPKAVIEVKQAAGRLIRTATDEGVLIL 943 Query: 670 YDKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 D+RLLTK YGK L++LP I + E I Sbjct: 944 ADRRLLTKGYGKSFLNSLPSTNITMCSIDELI 975 >UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73F47_BACC1 Length = 915 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 23/244 (9%) Query: 26 IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE----EQKTLVV 81 I RA Q QM D+ + L + R + IEAP G GK+L L+P + + R+ +++ ++ Sbjct: 24 IIRASQLQMALDIGEFLESSK-RVMIIEAPVGTGKSLGALVP-VLVDRKYNTFDKRNVMY 81 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 +TA + LQ Q+ ++PLL+K+ A G+ Y C + S++ + +L + Sbjct: 82 ATATINLQGQLMRSEIPLLRKLGLVNNPIVAKGKSHYYC--HFRMKNSSQKIENELFSRT 139 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS-TDKASCLNRNCY 200 D + E+ R +K T + L + I+D W+R+ ++K++C R C Sbjct: 140 DQHVL----EKFFRLSK------TGQRSELEEEHGFNIEDKKWKRVELSNKSNC--RACQ 187 Query: 201 YYRECPFFVARREIQ--EAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 + CP + RR + E +VV+ NH ++ + + + +L D G + D A Sbjct: 188 FSMVCPTIIHRRRFKAIENDVVITNHDQLINSFLNAMDMDSIYEPVLKTDMGLVIIDEAH 247 Query: 259 DALE 262 D LE Sbjct: 248 DFLE 251 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 89/303 (29%), Positives = 133/303 (43%), Gaps = 30/303 (9%) Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLL--WRSIPHIIVTSATLRSLNSFSRLQEM 474 T W + E+ E FH + + ++L ++ II S TL FS ++ Sbjct: 355 TSWISLEDNE------FHVIENNYKEVFRQMLDYIKNSNKIIFMSGTLTVNKDFSYIKNQ 408 Query: 475 SGLKEKAGDRFV-ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 +K +G+ L+SPF++ Q I IP+ P N+++ I RK + Sbjct: 409 WNIK--SGEAVTKVLNSPFDYKNQALIYIPKKLGNP---NKDEFIENALKEIRKLLRLTG 463 Query: 534 HLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRL----VELHRKRVANGERSVLV 589 +L L S M F + + + L + P Y+ VE KR E SVLV Sbjct: 464 GRTLL-LNTSKDHMDEFYNGIK----VELATSNVPLYKQGESGVENLTKRFKELEESVLV 518 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 G SF G + G L+ V I+K+ FP + P++ +K +R F+ S P Sbjct: 519 GSGSFFSGFSIAGTSLTSVIINKLPFPAFNDPIIELMSMGIKKEDR--FKKVSYPMMINK 576 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLT-KNYGKRLLDALP----VFPIEQPEVPEGIVKK 704 L Q VGRLIRS +G V I D+R+ T + YGK + + L V EV +KK Sbjct: 577 LDQAVGRLIRSIEDYGIVTILDERIYTSQGYGKDVRELLKEQGYVLTRSWEEVESFYIKK 636 Query: 705 KEK 707 EK Sbjct: 637 LEK 639 >UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E7F Length = 633 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 32/238 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M ++A+ +A + + LA+EA G+GK+++YL+P + E+K ++++T+ +A Sbjct: 27 RPGQIAMSQEIAQAIA--DNKSLAVEAEVGIGKSIAYLVPLVIQYFRERKQMIIATSTIA 84 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTP 147 LQDQ+ S L +L+ + A G YVC Sbjct: 85 LQDQLESDILNVLELLGVRADVEIAKGMKNYVCLERFHRFT------------------- 125 Query: 148 NNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPF 207 E K + D K+ GL+ D+ + D++W ++ + C + +C + Sbjct: 126 ---REHKDYTR---QFDRAKY-GLQLRQDVYVPDEVWDKICINSFGDKCSECSFRHKCEY 178 Query: 208 FVARREIQEA-EVVVANHALVMAAM---ESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 + R I+ E+V+ N ++++ ES + P LV+DE H+L + RDA Sbjct: 179 SLMRERIRNKDEIVICNQNMLVSHFIKEESGEGIFKPDFSTLVVDEAHNLENNFRDAF 236 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 118/275 (42%), Gaps = 35/275 (12%) Query: 437 GIRVS-------DQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG-DRFVAL 488 G+RV+ ++ RLL+ I+TSAT+ S NS + ++ G V + Sbjct: 349 GVRVNICKKDIRREIGRLLFTESRRTILTSATITSQNSGTLSEKYRYFLNNLGCPNNVCV 408 Query: 489 D----SPFNHCEQG------KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 SP+N+ + K+ IP R + N I E+ E K L Sbjct: 409 SEPKKSPYNYDKHSIMYVSDKLPIPNKRNRTAYRN--AAIKEIVKLL-NITEGK----AL 461 Query: 539 VLFASGRAMQRFLDYVTDLRL--MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAE 596 +LF + MQ ++++ L ++VQ + E ++ N SVL+G ++ E Sbjct: 462 ILFTAKDDMQYVFKKLSNMGLPYKIMVQDESTTQ---ERRLEKFQNNVNSVLLGTGTYWE 518 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+++KG+ LSQV I K+ FP D P+V E+ P ++P L Q VGR Sbjct: 519 GINIKGESLSQVIIFKLPFPVPD-PIV----EYKMRKTECPLMDVAVPEMIIKLKQGVGR 573 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 LIRS G V I D R+ D L P Sbjct: 574 LIRSSEDKGIVSILDPRVSKSQNTAYREDTLASLP 608 >UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium perfringens RepID=Q8XL45_CLOPE Length = 781 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 158/691 (22%), Positives = 266/691 (38%), Gaps = 130/691 (18%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI--AREEQKTLVVSTAN 85 R QR++ V K++ EG+ EAPTG+GKT+S L P + A+E QK ++ Sbjct: 193 RKGQRELAIRVYKSIT--EGKKCFAEAPTGIGKTMSTLFPAVKALGAKETQKIFYITAKT 250 Query: 86 VALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDEL 145 +I + L ++++ +G + N+TA Sbjct: 251 TT--REIANNTLRIMRE------------KGLNLRSVNITA------------------- 277 Query: 146 TPNNQEEQKRCAKL--KGDLDTY--KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 +++C K+ K + Y +G D +IA+ + L + D +N+ Sbjct: 278 -------KEKCCKMEEKKCIPEYCPYANGYFDRVNIALKEALRHKEEYD-LEYINKLSKE 329 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMES-EAVLP-DPKNLLLVLDEGHHLPDVARD 259 Y CPF + +VV+ ++ + S + +L K+ +++DE H+L D R Sbjct: 330 YNICPFEFSLELSNFCDVVICDYNYIFDPQASLKGILEGKAKDYTILIDEAHNLLDRGRS 389 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 S++I D F KL +F+ K +R N + LI Sbjct: 390 M--YSSKIFK-------DDFLKL----KREFKSKDKGIYNSLDRANKY------LIEKRK 430 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 + NL + E E P ++ I LRG E D+ E S + Sbjct: 431 VLENLETKSLVEKEE-------PSDLYGI----------LRGFLEKV--DIYESKSSEEN 471 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQ-LHLWFHCVGI 438 L L + L + G + T + +G L L +C+ Sbjct: 472 SNLLELYFNVYEFLNI----------------CGYYGEDFTTLYKLDGNNLELSINCLD- 514 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 ++ + + +I+ SATL + F +E+ G +E GD V L SPF++ + Sbjct: 515 --PSRILKSIMNRFKSVIIFSATLLPMEYF---KELYGAQE--GDYSVNLTSPFDY--KN 565 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT--D 556 K+ I V + N ++ + ++ + + +SK+ LV F S M + + + Sbjct: 566 KLTIVGKDVSTTYSNRKRTLPKIVNYIIECAKSKRG-NYLVFFPSYEYMWMVHEEIKKRE 624 Query: 557 LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ----SFAEGLDLKGDLLSQVHIHK 612 + L+ QGD E G +GL F+EG+DL D L V I Sbjct: 625 VDFSLVAQGDHMNEEEKEEFLSLFKEGGEKTHLGLAVLGGHFSEGIDLTLDKLIGVIIIG 684 Query: 613 IAFPPIDSPVVITEG--EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 + P I + E E+ S+ + F+ + ++Q GR IR+ G V++ Sbjct: 685 VGMPKI---CLERESIKEYYNSIGKNGFDYAYVYPGIIKVLQAAGRCIRTEKDKGVVLLL 741 Query: 671 DKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 D R T Y K LL F I E EGI Sbjct: 742 DDRYFTNKY-KSLLPREWFFNI-LVESEEGI 770 >UniRef50_C0ABZ5 Helicase C2 n=2 Tax=Verrucomicrobia RepID=C0ABZ5_9BACT Length = 163 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 58/111 (52%) Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +R + +L G SF G+D+ G LSQV I ++ F PV+ EW++ P Sbjct: 33 QRFRDAGNGILFGTDSFWTGIDVPGPSLSQVIITRLPFEVPTHPVLEARTEWVRERGGNP 92 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 F +LP A Q VGRLIRS G + + D R+L K YG+ +++LP Sbjct: 93 FNEITLPEALMTFRQGVGRLIRSARDRGIITLLDPRILHKTYGRLFIESLP 143 >UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2NCB3_ERYLH Length = 916 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 100/242 (41%), Gaps = 30/242 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRH----LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R QR DV A E R L +A TG+GKTL YL P A + Q T+ VST Sbjct: 198 RDGQRAYAKDVGGVFAPREKRKQPHVLLAQAGTGIGKTLGYLAPASLWADKAQGTVWVST 257 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAF------GRGRYVCPRNL-TALASTEPTQQD 136 LQ Q+ + ++ P + + GR Y+C NL AL + Sbjct: 258 YTKNLQRQLRGES----RRAWPSRRADGSRPVVVRKGRENYLCLLNLEDALQGGFAGRPA 313 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDT-YKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 +LA L + + L G L T ++ G+ TD + C+ Sbjct: 314 VLAQLVARWAAYSADGDMIGGDLPGWLGTLFRKRGITALTD-------------QRGECI 360 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPD 255 C +YR+C A R +A++V+ANHALVM P +L DEGHH+ D Sbjct: 361 YAGCPHYRKCFIERATRASAQADLVIANHALVMINAARGRHHGQPPTRIL-FDEGHHVFD 419 Query: 256 VA 257 A Sbjct: 420 AA 421 >UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=33 Tax=Streptococcus RepID=B5XKK7_STRPZ Length = 833 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 23/172 (13%) Query: 527 KQVESKKHLG--MLVLFASGRAMQRFLDYVTDLRLMLLVQ-GDQPRYRLVELHRKRVANG 583 K++ES K G +LVLF S + + DY+ ++ L Q + Y + +KR G Sbjct: 651 KRIESLKQEGSPILVLFNSKKHLLLVSDYLDQWQVPHLAQEKNGTAYNI----KKRFDQG 706 Query: 584 ERSVLVGLQSFAEGLD-LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY------ 636 E+++L+GL SF EG+D ++ D + I IA P D+P E ++K ++ Y Sbjct: 707 EQTILLGLGSFWEGVDFIQADRM----ITLIARLPFDNP----EDFFVKKMSHYLLEKGK 758 Query: 637 -PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 PF LP L Q +GR +R V+I D+RLLTK+YG+ +L+ L Sbjct: 759 NPFRDYFLPMTILRLKQAIGRTMRRQDQKSVVIILDRRLLTKSYGQVILEGL 810 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 48/215 (22%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA 111 IEA TG+GKT YL+P +A+E+Q ++VS LQDQ+ + ++ +++ +F Sbjct: 283 IEAQTGIGKTYGYLLP--LLAKEDQNQIIVSVPTKLLQDQLMAGEVAAIQE-----QFHI 335 Query: 112 AFGRGRYVCPRNLTALASTEPT--QQD-----------LLAFLDDELTPNNQEEQKRCAK 158 A + P N L S + Q D LL +L E + +E K+ + Sbjct: 336 ACHSLK--GPANYLKLDSFADSLDQNDQNRLVNRYKMQLLVWL-LETKTGDLDEIKQKQR 392 Query: 159 LKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE 218 + K DG + D D WR V+ + + A Sbjct: 393 FAAYFEQLKHDGDIKQSSEFYDYDFWR-----------------------VSYEKAKTAR 429 Query: 219 VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 +++ NHA + ++ + +N +LV DE L Sbjct: 430 LLITNHAYFLHRVQDDKDF--ARNKVLVFDEAQKL 462 >UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C9XQW7_CLODC Length = 1039 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 34/245 (13%) Query: 43 AGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLK 101 + +E + IEAPTG+GK++ YL+P I AR +K L++ST LQ Q+ +KD+P +L Sbjct: 284 SEDEEKIACIEAPTGIGKSVGYLLPAILEARINKKRLLISTDTKELQIQLINKDIPNVLD 343 Query: 102 KIIPDLKFTAAF--GRGRYVCPRNLTA----LASTEPTQQDLLA--FLDDELTPNNQEEQ 153 + + K + + G+ Y+C L A S PT+ ++L+ FL Sbjct: 344 SLGLNGKVSYGYIKGKNNYICIDRLEAYIDDYESQNPTKGEILSLIFL------------ 391 Query: 154 KRCAK--LKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVAR 211 KR + GD++ + + +I+ R +S D C + C ++C + Sbjct: 392 KRLVEGGKYGDIEEINYLVFDNFKEISTH---LRNVSCDPNMCRPKKC--KKDCLYKNRI 446 Query: 212 REIQEAEVVVANHALVMA-AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP 270 E++E + V NH+L+ + E L + +++DE H+L + D + Sbjct: 447 EELKEEHITVVNHSLLAKWPYKDEKPLEN-----IIVDEAHNLTEKGYDFFSSIINSKSL 501 Query: 271 WYRLQ 275 Y LQ Sbjct: 502 RYLLQ 506 >UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7HQ70_PARL1 Length = 970 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 96/243 (39%), Gaps = 48/243 (19%) Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL----- 107 EA TG+GKT+ Y+ P A + T+ +ST LQ Q+ + L ++ PD Sbjct: 261 EAGTGIGKTIGYIAPASLWAARNKGTVWLSTYTKNLQRQLDQE----LSRLYPDPAEKAE 316 Query: 108 KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY- 166 K GR Y+C N LA +A L + + + GD + Sbjct: 317 KAVIRKGRENYLCMLNFAELADRAAMGGGAVAI---GLVARWAKASRDGDMVGGDFPAWL 373 Query: 167 --KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + G+ T L+ + C+ C YY++C A R+ + AE+VVANH Sbjct: 374 AARLGGVTGRTG----------LTDRRGECVYTACPYYKKCFIERAIRKARRAEIVVANH 423 Query: 225 ALVM---------------------AAMESEAVLPDPKNLL--LVLDEGHHLPDVARDAL 261 ALVM AA +E P + L V DEGHH+ D A A Sbjct: 424 ALVMRQAALDQAMGPVAHRPVKAAEAAGNAEDEAPSGREALARFVFDEGHHIFDAADGAF 483 Query: 262 EMS 264 + Sbjct: 484 SAT 486 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 28/218 (12%) Query: 48 RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD- 106 +H+ IEAPTG GKTL YL P IARE+Q+ +VVS LQ+Q+ + L I+ Sbjct: 280 KHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVSVPTTILQNQVLAVGRQQLNAILETP 339 Query: 107 LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK-----G 161 ++F G Y+ NL A + +T + R +K Sbjct: 340 MQFAILKGSSNYL---NLEAFMKS--------------ITHQTLSKDSRLVAMKILVWLT 382 Query: 162 DLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVV 221 DT +D + H + + D R + LN ++ + A ++++ A+ ++ Sbjct: 383 KTDTGDFDEINHHINFSNFVDGIRHHG---KTVLNPKSKFFEYDFYRRAMKKLKYADFII 439 Query: 222 ANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 NH + A+ ++ + + LLV+DE H P + + Sbjct: 440 TNHRYL--ALHADEIGESDQQPLLVIDEAQHFPTIVSN 475 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF-PPIDSPVVITEGEWLKSLNRYPFEVQS 642 E ++L G SF EG+D GD L + + ++ F P D V ++ + R F Sbjct: 804 ENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPEDRMV-----QFARKNKRSSFMSFV 858 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 LP A Q +GRLIR+ G V+ D R++ K+YGK + LP Sbjct: 859 LPDALLTFKQGIGRLIRNSDDTGVAVMLDNRIINKDYGKLFIKQLP 904 >UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK23_9CAUL Length = 986 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 25/249 (10%) Query: 39 AKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP 98 A A E+ L +EA TG GKTL YL P A + Q + +ST ALQ QIY+ Sbjct: 257 APKWASEQPNMLLLEAGTGTGKTLGYLSPSRLWAEKAQGRVWISTYTKALQKQIYNDTRA 316 Query: 99 LL-KKIIPDLKFTAAFGRGRYVCPRNLT---ALASTEPTQQDLLAFLDDELTPNNQEEQK 154 L + + K GR Y+C N A + P + + A + + + + Sbjct: 317 LFDTEGERENKVAIRKGRENYLCLLNWQERLAPLTQGPGEAIVAALVARWIVYSRDGD-- 374 Query: 155 RCAKLKGDLDTYKWDGLRDHTDIAIDDDLW-RRLSTDKASCLNRNCYYYRECPFFVARRE 213 + GD T+ L + A+ L L + C+ C +YR C + R+ Sbjct: 375 ---IVGGDFPTWLPSLLPAGSAAAMFGALNPANLVDRRGECIYSACPHYRTCFVEKSIRK 431 Query: 214 IQEAEVVVANHALVMA-----------AMESEAVL-PDPKNLL-LVLDEGHHLPDVARDA 260 + A++++ANHALVMA A + EA + P+ L LV DEGHH+ + A A Sbjct: 432 AKSAQIIIANHALVMAQAAYDLREAAKAEQGEATMEPEAPGLSRLVFDEGHHVFEAADGA 491 Query: 261 LEMSAEITA 269 S+E++ Sbjct: 492 F--SSELSG 498 >UniRef50_UPI000186CB9B regulator of telomere elongation helicase 1 rtel1, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB9B Length = 1016 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 150/728 (20%), Positives = 288/728 (39%), Gaps = 100/728 (13%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P IP Q+ + V L +E H +E+PTG GKTL P A A+ ++K V Sbjct: 12 SFPYPIPYDIQKSYMNKVLTCL--DEKTHAVLESPTGTGKTLCLFAPVTAWAKRKKKNAV 69 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALAST--EPTQQDLL 138 V QD + P + + + R + +A T E + D+ Sbjct: 70 VHVT----QDSNKELNSPHFESTEHQGPWGVKSKSKVWYTARTHSQIAQTVSEVRKCDIE 125 Query: 139 AF------LDDELTPNNQ--EEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR---- 186 D+L N EE+ K + K + +T ++ + D R Sbjct: 126 GLHVRVMGARDQLCINELVLEEKDSYIKTVKCKELVKSKKCKYYTKLSYEKDFKRFYQSG 185 Query: 187 --LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL 244 L + + ++C CP+F+A+R + A++++ + ++ E+ +N + Sbjct: 186 EVLDIEDLVSIGKSCGI---CPYFLAKRASETADILLLPYNYIIDRESRESNGLQLQNDV 242 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKL-VATCMEQFRPKTIPPLAIPER 303 ++ DEGH++P ++ E S FT L VA ++ + + + E Sbjct: 243 IIFDEGHNVPSTCEESYEFS--------------FTSLDVAIGIKNIQDVMLSLSKLTED 288 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE--MLRG 361 L +E ++ ++N + + + Q+ E + +E+L + + L+ ++ G Sbjct: 289 LIE--DEEIDVSKHVSNSM-MMVEMLQKLESALSEMNASNELLPVSELYNFLSSAVLIDG 345 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWAT 421 ++ F +D + + + + L+ +M M+ + + + + + +S +T T Sbjct: 346 ISS-FKSDSEKLSLTGSTLETFNLLEKMMSV--MYGSTVRSFDKSIVDRSFKCVIT---T 399 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR--------LQE 473 ER +C S ++ LL II+TS TL L +F E Sbjct: 400 DPERHFAKKFSLYC--FNPSFGIKSLLALGSQSIIITSGTLSPLRTFIYELGLPKPVTLE 457 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 + +K FV L + N+ + R N+ ++++ + + S Sbjct: 458 NKHIAKKCQVPFVILGTGVNNVKMDGAYKNR--------NDPKYVSSLGMSLTNLIASIP 509 Query: 534 HLGMLVLFASGRAMQRFLD-YVTDL----------RLMLLVQGDQPRYRLVELHRKRVAN 582 G+L+LF+S MQ + + DL R+ + + +E +R+ + + Sbjct: 510 D-GILLLFSSYTMMQSLKESWEKDLGIWTRLNSLKRVFVEPRNKNEFINCMENYRRAIDS 568 Query: 583 GERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV 640 G ++L+G+ +EG+D K V I + FPPI VI + ++ +SL Y + Sbjct: 569 GNGAILMGVLRGKISEGMDFKDQYCRGVFIIGVPFPPIQDLRVIGKQKYSESLMIYNEKT 628 Query: 641 QS------LPSASFNLI----QQVGRLIRSHGCWGEVVIYDKRL----LTKNYGKRLLDA 686 ++ P S + Q +GR+IR +G +++ D R L N L D Sbjct: 629 KTEEKLYNQPYLSIEAMKATNQAIGRVIRHGKDYGVIILVDYRFAWPRLFYNISSWLRDD 688 Query: 687 LPV---FP 691 P FP Sbjct: 689 FPTESNFP 696 >UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillus gasseri JV-V03 RepID=C0XBA8_9LACO Length = 773 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 40/257 (15%) Query: 27 PRAPQRQMIADVAKTLAGEEGRH--LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 PR Q QM D+A L ++ R + +EAP G GKTL LIP I + K + T Sbjct: 23 PRVSQVQMSLDIADFLYNKKIRSKIMFVEAPVGTGKTLGALIPTILYSSNFHKRITYVTG 82 Query: 85 NVALQDQIYSKDLPLLKKI---IPDLKFTAAFGRGRYVCPRNL-TALASTEPTQQ-DLLA 139 LQ Q++ +DL +LK I +P + A G+ Y C NL + +P Q+ D+L Sbjct: 83 TKNLQRQVFYEDLEMLKGINLMLPSSETVLAMGKDNYACIDNLHNNRSKFQPAQRFDMLK 142 Query: 140 FLDDELTPNNQEE--QKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 + D+ T + E K A+ + L ++WD + ++ + +C Sbjct: 143 KILDQTTTGLRVEIDNKLKARDQDPLSDFEWDLI--------------KIKGKQKACKIY 188 Query: 198 NC--YYYREC----PFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGH 251 NC + YRE PF + Q + +L+ E +++ ++V+DE Sbjct: 189 NCPGHRYRETFNKKPFLTVTNQNQMIQ------SLINVIEEKNSIVSVTPG-IIVVDEAQ 241 Query: 252 HLPD----VARDALEMS 264 + V +++L +S Sbjct: 242 LFDNSFLGVVKNSLNIS 258 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 118/238 (49%), Gaps = 15/238 (6%) Query: 455 IIVTSATLRSLNS-FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 II S TL + N+ ++ G+K+ ++ +SPF+ +Q +++P +++N Sbjct: 384 IIFLSGTLTNTNNPIQEIENEWGIKDFIYKKY---NSPFSPKDQVYLMLPEKGFN-NLNN 439 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL---MLLVQGDQPRY 570 + +H EM + + ++ H G+L+L ++ ++ L + ++L QG Sbjct: 440 KSKHATEMVERTIRPLCNRIHGGILIL-SNSLELKDHLSIKMKSKFENRLVLTQGQMSNN 498 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV-ITEGEW 629 L +L +K + S+L+G SF G + G+ L V + + F D P + + + Sbjct: 499 SLTKLFKKE----KDSILIGSGSFKTGFSIPGEALQAVVLSSLPFSVPDDPYIKLKIQTF 554 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 K ++ P ++ SL L Q +GRLIRS +G +V+ D RL +K YGK++ + L Sbjct: 555 AKRYHKSPNDI-SLQLMLKELEQSMGRLIRSIDDYGVIVVTDSRLYSKPYGKKVRNWL 611 >UniRef50_B4U7P2 Helicase c2 n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7P2_HYDS0 Length = 730 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 39/242 (16%) Query: 28 RAPQRQMIADVAKTLA-----GEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 R Q +M + V + + EE + IEAPTGVGK+ YL+P I E K ++S Sbjct: 15 RKSQEKMFSIVEECINKEDFDDEEQNVVLIEAPTGVGKSFGYLLPII----EHGKQAIIS 70 Query: 83 TANVALQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 T LQ+Q+ +DL L I + + + G+ Y+C L E + Sbjct: 71 TKTKILQEQL-RRDLEHLSSIRKNYFGKGINYLILKGKANYLC---LDRFYDKENELKQT 126 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC--- 194 F L +E +++ WDG + T+I + ++W ++ D+ C Sbjct: 127 TIFGKVSLANTIREL----------IESSGWDGDIEFTNIPL--EVWTDINIDENYCDSN 174 Query: 195 LNRNCYYYRECPFFVARREIQE-AEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 ++C Y ++C ++ ++ ++ A+++V NH+L++ D + +LV+DE H L Sbjct: 175 YRKSCPYLKDCFYYKKLKDKEKLADILVINHSLLVLKN-----FDDTEEKILVIDEAHEL 229 Query: 254 PD 255 + Sbjct: 230 DE 231 >UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=A8MJA6_ALKOO Length = 800 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 161/677 (23%), Positives = 264/677 (38%), Gaps = 130/677 (19%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 Q P R QR++ V +T+ +E + L +APTG+GKT+S L P + Sbjct: 195 QFPFSNYRKGQRELAVAVYRTI--KEEKKLFAQAPTGIGKTISTLFPTVK---------- 242 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 A+ + I SK L K I AF R + + R + T +D + F Sbjct: 243 ------AIGEGITSKVFYLTAKTITRQVAEEAFSRMKSMGLR----FKTVTLTAKDKICF 292 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 ++ N EE C+ KG D K GL D+ ++D + R + Sbjct: 293 --EKGKQCNPEE---CSFAKGHFDRVK-SGL---ADLFQNEDSFTR------EIIEFYAQ 337 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAA-MESEAVLPDPK-NLLLVLDEGHHLPDVAR 258 ++ CPF + A+ V+ ++ V + + D K + ++DE H+L D +R Sbjct: 338 RHQICPFEFSLDIAIWADGVICDYNYVFDPRVYLKRFFADEKGDYTFLIDEAHNLVDRSR 397 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 SAEI + +EQ R + +++Y+ + L Sbjct: 398 GMF--SAEINKKIF--------------LEQKRV-----------MKHQSQKVYKTLDKL 430 Query: 319 NNILNLYMPAGQE-AEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 N + + A ++ EH F + + +E EI LA +R ELF K G Sbjct: 431 NAFM---IEARKKCGEHSFYIQK--EENTEIYHLLASF---VRETDELF------KEG-- 474 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 QM+ + E + +A+ + E+R+G + C+ Sbjct: 475 ---------YQMDENKDLLELYFNAFAFLKIAEFYDERYRTYI--EKRQGDVFFKIFCLD 523 Query: 438 IRVSDQLERLLWRSIPH---IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNH 494 LL +I I SATL L F + + G +E D + L SPF Sbjct: 524 PSY------LLGEAIKRGRTAIFFSATLTPLPYFKEI--LGGAEE---DYAIRLGSPFES 572 Query: 495 CEQGKIVIPRMRVEP-SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD- 552 G +V + + + D HIA++ A +V K V F S + M+R LD Sbjct: 573 ENLGLMVADYISTKYRNRDRSYIHIADVIA----KVSEGKTGNYFVFFPSYQYMRRVLDV 628 Query: 553 YVTDLRLMLLVQGDQPRYRLVELHRKRVANG-----ERS-----VLVGLQSFAEGLDLKG 602 +V + + ++Q Q + E R+ N ER+ VL G+ F+EG+DL G Sbjct: 629 FVEEYPHINVLQQQQT---MTEEEREEFLNKFEDQPERTSIAFGVLGGI--FSEGVDLVG 683 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + L V I + P + V + E+ N +E + ++Q GR+IR+ Sbjct: 684 ERLIGVIIIGVGLPQLSLEVNLI-MEYFNQKNNKGYEYAYMFPGMNKVLQGAGRVIRTET 742 Query: 663 CWGEVVIYDKRLLTKNY 679 G V + D R + Y Sbjct: 743 DRGIVCLVDDRFTSYGY 759 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL--NR 635 KR E+++L+G SF EG+D K + + + ++ F D P V E LK Sbjct: 804 KRFGIAEKAILLGANSFWEGIDFKHNGVDLAIVTRLPFESPDQPEVKLRTECLKKQVGAD 863 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 FEV +LP A Q GRLIR+ G V+ D+R+ K+YG++ L LPV Sbjct: 864 KIFEVDTLPRAILRFRQGCGRLIRNERDHGVFVVLDQRVWNKSYGEQFLSGLPV 917 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 27/248 (10%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +I + + + L +EAP G GKT SYL+ A + LVV+T Sbjct: 262 RRGQVSLINRLHDFVYSDSDNSLVVEAPNGSGKTFSYLM-AYAYELYSGRKLVVATPTKV 320 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL-TALASTE-PTQQDLLAFLDDE 144 LQ+QI +++P L ++ DL Y+ +L T+ P QQ L+ + Sbjct: 321 LQEQILKQEIPQLLRVTRLDLDAQIVKSSSHYLDLDGFYNSLYQTDNPIQQTLILQMGIL 380 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 + E GDLD + + AI+ R+ T + E Sbjct: 381 IWLTETE--------TGDLDELQLTNYQAPLFAAIEHPGDARIGTS-----------FAE 421 Query: 205 CPFF-VARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEM 263 F+ +AR ++A++++ NHA +A +++ +N LV+DE H + + Sbjct: 422 YDFWNLARSRQEQADILITNHA-YLANHYMDSIW--GQNPFLVVDESHRFVENVASSRND 478 Query: 264 SAEITAPW 271 S + + W Sbjct: 479 SLQFESFW 486 >UniRef50_B5ZKV6 Helicase c2 n=11 Tax=Rhodospirillales RepID=B5ZKV6_GLUDA Length = 1002 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 98/235 (41%), Gaps = 52/235 (22%) Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAA 112 EA TG GKTL Y+ P A + +ST LQ QI + L ++ PD Sbjct: 247 EAGTGTGKTLGYVAPASLWAERNGGAVWISTYTRHLQRQIEGE----LSRLYPDPAV--- 299 Query: 113 FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD-------- 164 R R+V R +++ L L N EE A +G Sbjct: 300 --RRRHVVLRK---------GRENYLCLL-------NMEEAVNMAGSRGGPSGAIIGLSL 341 Query: 165 TYKWDGLRDHTDIAIDD------DLWRR-----LSTDKASCLNRNCYYYRECPFFVARRE 213 +W G D+ D DL+ R ++ + C++ C +Y+ C + R Sbjct: 342 VARWAGATADGDLLGGDLPGWFGDLFGRGLLAGIADRRGECIHGACPHYQRCFVEHSIRR 401 Query: 214 IQEAEVVVANHALVMA-----AMESEAVLPDPKNL--LLVLDEGHHLPDVARDAL 261 +EA++V+ANHALVMA AM+ E+ D N+ V DEGHH+ D A A Sbjct: 402 AREADLVIANHALVMAQAAWHAMDGESGA-DEDNIPTRYVFDEGHHVMDAADSAF 455 >UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUZ2_ACIC1 Length = 710 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 126/301 (41%), Gaps = 30/301 (9%) Query: 395 MFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPH 454 +F+ S+ LA SG +W R++R G + + V+ L ++ S Sbjct: 407 LFDTASRF-----LAGDSGD--VRWLDRDDRGGAV---LRAAPLDVAPLLRNAIFASRIA 456 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI-----PRMRVEP 509 ++ TSATL SF + E GL R + + SPF++ QG + + P R Sbjct: 457 VL-TSATLTVGGSFHPMIERLGLHHDV--RTLDVGSPFSYQRQGILYVASHLPPPGRDGI 513 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPR 569 S D E+ +A M A + LG+ + + F D +L QGD Sbjct: 514 SADALEELVALMTA------AGGRTLGLFSSMRAAQEAAAFARERVDF--PVLCQGDDAT 565 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L+ +R A ++ L G S +G+D+ G V + +I FP D P++ + Sbjct: 566 AELI----RRFAADAQTCLFGTLSLWQGVDVPGAACQLVVVDRIPFPRPDDPLMAARQQA 621 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 + F + A+ L Q GRL+RS G V + D RL T Y + L +LP Sbjct: 622 VTEAGGNGFLQVAAGHAALLLAQGCGRLLRSPHDRGVVAVLDSRLATARYARFLRSSLPP 681 Query: 690 F 690 F Sbjct: 682 F 682 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 11/90 (12%) Query: 42 LAGEEGRHLAIEAPTGVGKTLSYLIPGI--AIAR----EEQKTLVVSTANVALQDQIYSK 95 L+G + RHL ++A TG GK+L+YL+P + AR +E++ ++V+TA +ALQ Q+ + Sbjct: 41 LSGGDKRHLLVQAGTGTGKSLAYLVPAMWHVTARDDADDERRPVIVATATLALQRQLVER 100 Query: 96 DLPLLKKIIPDL-----KFTAAFGRGRYVC 120 DLP L +++ L F GR Y+C Sbjct: 101 DLPRLVEVLSPLLPRRPTFAILKGRRNYLC 130 >UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUD5_9CLOT Length = 678 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 26/251 (10%) Query: 449 WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVE 508 W I+TS TL++ F R ++++GL+ +AG + +SPF++ + + +P+ Sbjct: 421 WEEGMSAILTSGTLKAGTGFLRTRQITGLEGRAGVQEYVAESPFSYEKNCLLYLPK---- 476 Query: 509 PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQP 568 ++D+ + E A V H+ L+ G + F Y + +++ P Sbjct: 477 -TLDHCRRGSREEA------VMVANHIHSLICSTYGHTLVLFTSYTLMGSVYQILRDSLP 529 Query: 569 RYRLVELHRK------RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 + +VE+ R R E VL S EG+D GD++S + I K+ F D P+ Sbjct: 530 -FPMVEVWRHSQEEILRFKTMENGVLFAAGSCWEGVDFPGDMVSSLIIVKLPFAVPD-PI 587 Query: 623 VITEGEWLKSLNRYPFEVQSL--PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYG 680 E E SL Y +QS+ P L Q+ GR IR+ V I D R + G Sbjct: 588 SEAEKETYDSLETY---IQSIIVPDMQKKLRQEFGRAIRTETDTCVVSILDIRAVKG--G 642 Query: 681 KRLLDALPVFP 691 K DA+ P Sbjct: 643 KYHEDAMCALP 653 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 68/264 (25%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAI-EAPTGVGKTLSYLIPGIAIARE----------EQ 76 R Q ++ ++ TL GE+ +A+ +A G+GKT +YL+ + + + EQ Sbjct: 52 REEQIRLCHEMLDTLLGEQ---IALCDAGVGIGKTYAYLVACVLLRKYSMLTGRGNPLEQ 108 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPD-------LKFTAAFGRGRYVCPRNLTALAS 129 + +VVST+++ALQ I ++ +P L +++ + L+ G+ +VC L Sbjct: 109 RPVVVSTSSIALQKAILTEYIPFLSRVLLEQGIIQSPLRAVVRKGKEHFVCDNRL----- 163 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS- 188 +Q + A + +QK + L LR H D+ D + LS Sbjct: 164 ----EQRIEAI---------RHKQKNAVQKAALL------SLRKHYDM----DSVKNLSG 200 Query: 189 -TDKASCLNRNCYYYRECPF--------FVARREIQEAEVVVANHALVMAAMESEA---- 235 + C+ + C RECP ++ Q+ + + NH ++A A Sbjct: 201 FDRRLVCVPKFC--PRECPGRQMCRYQRYLEESRKQDVFIQICNHNYLLADAYHRAEGYK 258 Query: 236 -VLPDPKNLLLVLDEGHHLPDVAR 258 +L D + L++DE H LP+ AR Sbjct: 259 PLLSDYRT--LIVDEAHKLPEAAR 280 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 41/226 (18%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA 111 IEAPTG+GKT YL+P +A K LVVSTA LQ Q+ + P L K LK Sbjct: 272 IEAPTGLGKTYGYLLPILASG----KGLVVSTATKVLQKQLVNDVAPKLGKTF-GLKMAK 326 Query: 112 AFGRGRYVCPRNLTAL-------ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD 164 G Y+ R + L + E + +L +L + T G+LD Sbjct: 327 IVGTKNYISLRKFSELLLNNTDGKNFEIFKMKILIWLTETRT--------------GELD 372 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + + + +DD + + D +N +Y + + A++E ++AE+ V NH Sbjct: 373 --------EVSKVMTNDDYFEVIRHD--GYVNTKQLHYEQDFWLKAQKEAEQAEIKVVNH 422 Query: 225 ALVMAAMESEAVLPDP--KNLLLVLDEGHHLPDVARDALEMSAEIT 268 A + +E A P+ +N +LV+DE L + +A + S +IT Sbjct: 423 AYL---IERLADYPETFLENRVLVVDEAQQLFPIMENAGQKSLKIT 465 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 11/163 (6%) Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 SK +L M+VLF S A+ + ++ +L Q + +K+ GE +L+G Sbjct: 622 SKLNLPMVVLFTSKMALTFVAEKLSAEGFDILAQDINGSPAQI---KKKFDKGEGKILLG 678 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 L SF EG+D D +QV I I P +P I ++ + PF ++P A+ L Sbjct: 679 LGSFWEGVDF--DKQNQV-ILVIPRLPFATPDDILTKKYAQKFEN-PFYDFNVPMATLKL 734 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR----LLDALPV 689 Q +GR+ R + +V+ DKRL K+Y KR L + LPV Sbjct: 735 RQAIGRVNRRKNQYSSIVVLDKRLAGKSYAKRMRKNLSETLPV 777 >UniRef50_UPI0001699456 Helicase c2 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699456 Length = 198 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 9/105 (8%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L I F R Q++M VA L E G L EA TG GKT +YL+P + R+ Sbjct: 14 LARCIDGFSQRPQQQEMAEAVAAVL--ERGGTLICEAGTGTGKTFAYLVPALMSGRK--- 68 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF--GRGRYVC 120 ++VST LQDQ++ +DLPL++K + + F A GR Y+C Sbjct: 69 -VIVSTGTKNLQDQLFHRDLPLVRKSL-AVPFAVALLKGRANYLC 111 >UniRef50_Q9Z9N9 Unknown (Fragment) n=1 Tax=Bacillus halodurans RepID=Q9Z9N9_BACHD Length = 154 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ V + + E H+ IEA TG GK+L+YL+P A E+ +V+ST + Sbjct: 63 RQGQLKMMEVVHEAFSNNE--HVLIEAGTGTGKSLAYLLPAAYFAHMEKAPVVISTQTIP 120 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAFGRGR 117 LQ Q+ +D+PLL+KI+P A +GR Sbjct: 121 LQSQLLERDIPLLQKILP-FPINVALLKGR 149 >UniRef50_A6UVN5 Helicase domain protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVN5_META3 Length = 706 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 62/100 (62%), Gaps = 7/100 (7%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P + PR Q++M+ + ++ + ++L +EAPTGVGKTLSYL+P + A++ ++ ++ Sbjct: 18 NFPYYEPRPQQKKMMESIFYSIVNK--KNLVVEAPTGVGKTLSYLLPSLYFAKQGKRVMI 75 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 + T + Q++I+ +DL LK +LK + G+G + C Sbjct: 76 L-TETIDQQERIF-EDLNSLKH---NLKVSFMMGKGNFYC 110 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 30/256 (11%) Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD-RFVALDSPFN 493 C + VS+ L+ L + +I SATL +L ++ LK G + + LDSPF+ Sbjct: 425 CEPVAVSNYLKNLYNGAT--VIHCSATLGNL-------KIHALKTGMGSSQTLTLDSPFS 475 Query: 494 HCEQGKIVIPRMRVEPSID-NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 + KI+ R E D N+E+ + K ++S K LVLF S + Sbjct: 476 E-HRRKIIALRDGEEMKYDSNKEKKRNKANNNILKLLKSAK-CNSLVLFKSFEDLNSCYA 533 Query: 553 YVTDL-----RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 ++ + + + + + EL K NG +L+ FAEG+D+ + L+ Sbjct: 534 HLLNNNNLLNQKIYIYEAGMDGKEAKELKEKFERNG--GILLATGRFAEGVDIPREALTM 591 Query: 608 VHIHKIAFPPIDSPVV------ITEGEWLKSLNR---YPFEVQSLPSASFNLIQQVGRLI 658 V I + FP + +P++ I +G K +N F + S S +IQ +GRLI Sbjct: 592 VIIDSLPFP-VPTPLINREQKMIEDGLKRKKVNNANWTAFLMTSFHIMSRTIIQMIGRLI 650 Query: 659 RSHGCWGEVVIYDKRL 674 R+ +G VVI DKR Sbjct: 651 RTEEDYGVVVIQDKRF 666 >UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_ALKMQ Length = 657 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 20/265 (7%) Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 Q+ F V +S L+ L++ ++ TSATL + FS GLK+ + Sbjct: 393 QMDGSFWVVPRELSKMLDIHLFQKGLPVVFTSATLSNEGDFSYFTRTLGLKKTSCS---T 449 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 ++SPF+ EQ + +P +PS ++ E + + G LVL +S + Sbjct: 450 VESPFDIEEQVVVHLP----QPSSNSHEDIGFSLGIEGLVSLLKLNGGGALVLTSSLDEV 505 Query: 548 QR----FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 ++ F DY ++ +G+ R LV R+ V+ SVL+G SF EG+D+ G+ Sbjct: 506 RKIRKGFKDYQLPFEVLWEDKGE--RGYLVRKFREEVS----SVLIG-TSFWEGIDIPGE 558 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V + ++ FP +D P++ + E K P P L Q GRLIR+ Sbjct: 559 ALSLVVVWQLPFPSLD-PLIEVQREEAKKEGLDPKVTVDYPEMGLKLKQGCGRLIRTKDD 617 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALP 688 G +VI + ++ + + + ++ ALP Sbjct: 618 RGAIVIMES-IIGEPWEEVVMGALP 641 >UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhodospirillales RepID=Q0BQ29_GRABC Length = 968 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 27/224 (12%) Query: 49 HLAI-EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD- 106 HL + EA TG GKTL Y+ P A ++ +ST LQ QI + L ++ PD Sbjct: 244 HLVLAEAGTGTGKTLGYIAPASLWAERNHGSVWISTYTRHLQRQIEGE----LARLFPDP 299 Query: 107 ----LKFTAAFGRGRYVCPRN----LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAK 158 K GR Y+C N + ++A T+ LA L R A Sbjct: 300 VIRRQKTVLRKGRENYLCLLNFEDAVASVAGLAHTRTIPLALL------------ARWAL 347 Query: 159 LKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE 218 + D D D L L L+ + C++ C ++++C + R + A+ Sbjct: 348 VTEDGDLQGGD-LPGWLPELFGGGLLPALADRRGECIHAGCGHWKKCFVEHSIRRARGAD 406 Query: 219 VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALE 262 +VVANHALVMA + V DEGHH+ D A A Sbjct: 407 LVVANHALVMAQAVWGGLDDTTVPTRYVFDEGHHVFDAADGAFS 450 >UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWJ8_RHOCS Length = 946 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 33/213 (15%) Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-----L 107 EA TGVGKTL YL P A + + + +ST LQ QI + L ++ PD Sbjct: 258 EAGTGVGKTLGYLAPATLWAEKNKGPVWISTYTRQLQHQIDKE----LDRLHPDPEKKAR 313 Query: 108 KFTAAFGRGRYVCPRNL---TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD 164 K GR Y+C NL + A T P + + + + GD Sbjct: 314 KVVIRKGRENYLCLLNLEEASLAAQTMPQVAVAMGLMARWAAVTRDGDMQ-----GGDFP 368 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + D L + + D + C+ C +Y++C + R + A++VVANH Sbjct: 369 GWLVDLLGRGRTLGLADR--------RGECVFSACPHYQKCFIEKSVRRARRADIVVANH 420 Query: 225 ALVM--AAMES--EAVLPDPKNLLLVLDEGHHL 253 ALVM AA+ +A +P V DEGHH+ Sbjct: 421 ALVMVQAALGGGDDAYVPS----RFVFDEGHHV 449 >UniRef50_UPI0001850E3B bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850E3B Length = 305 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 +++ + R Q +M+ V + + +E + IEA TG+GKT+ YL+P A E K Sbjct: 1 MKKAYSSYDNRIDQLKMMDHVYEQFSQKES--MVIEAGTGMGKTMGYLLPSAYYALEHNK 58 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV-CPRNLTALASTEP--- 132 +++ST LQ QI ++P L ++ + + GR Y+ R +L E Sbjct: 59 RVIISTYTNQLQAQILYNEIPKLNNMLSFPIHVSILKGRTHYLDLFRFEQSLYENEKQFD 118 Query: 133 ---TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 T+ +L +L + T + +E G L W R+ + Sbjct: 119 VVLTKLQILVWLTETETGDVEELNLTSG---GYL-------------------FWNRVKS 156 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE-AVLPDPKNLLLVLD 248 ++ +Y + A+++ +A +V+ NH +++ ++ E + D + V+D Sbjct: 157 SSYMIDEKSNPWYSYDYYEHAKKQATKANIVITNHHMLIQSLSQEDSFFADCSH--YVID 214 Query: 249 EGHHLPDVAR 258 E HHL +V + Sbjct: 215 EAHHLEEVTQ 224 >UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environmental samples RepID=Q64EP0_9ARCH Length = 644 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 155/695 (22%), Positives = 277/695 (39%), Gaps = 115/695 (16%) Query: 18 LQEQIPDFIP----RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 ++E P F P R QR+ + DV + + G G LA APTG+GKT++ L+P + A Sbjct: 1 MEEDKPFFFPFPSIREGQREFMEDVKQAVEG--GNILAAHAPTGIGKTVAVLVPALQYAI 58 Query: 74 EEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAA-FGRGRYVCPRNLTALASTEP 132 + KT+ T+ + Q +I L L+K+ L F + +CPR A Sbjct: 59 QNDKTVFFLTSKRS-QHKIAIDTLRLIKE-RAKLNFVVVDIISKQSMCPR-----AKAGS 111 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 ++ + + ++++ +RC + + D +RD I ++L+ Sbjct: 112 IYREFYSLFSE--FCRSEQKNRRC-RYFVNRDEEAQQRIRDK--IMHVEELYEW------ 160 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP----KNLLLVLD 248 C + CP+ A + A+V+V ++ + ++ +E VL +++++++D Sbjct: 161 ------CSFRGVCPYKAALEVGESADVLVCDYNYLFSSDIAETVLEKIGKGLEDVIVIVD 214 Query: 249 EGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHC 308 E H+LPD R+ L S+E+ R TI A L Sbjct: 215 EAHNLPDRIRNNL--SSEL-----------------------RMSTITEAA--HGLRRTN 247 Query: 309 EELYELIASLNNIL-NLYMPAGQEAEHRFAMGE--LPDEVLEICQR------LAKLTEML 359 E+Y+ + L I L M A + + + L D + ++ +R L Sbjct: 248 REIYDNLMELETIFAKLAMAARKNKKEEMNVDRDFLVDGMEKVLRRKIVAMSYDDFVNSL 307 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 R +AE +++ + L R +L + L + K R+ S++Q + P Sbjct: 308 RNIAERSGTSETDENTKYKDEALQRNVLNIADFLDEWRTNEKCLRIFSVSQHNENP---- 363 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 LH I VS+ + I+ S TL ++ + S + Sbjct: 364 --------SLHFKLLDPSI-VSEP----AFAGAHSTIMMSGTLCPAEMYAEILGASSDRI 410 Query: 480 KAGDRFV-ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL--G 536 K + + SPF E IV+ R E+ +++A K E +++ G Sbjct: 411 KGKEIVLREYKSPFPE-ENRLIVVTRGLTTKYTKRGEEMYSKIAG---KIAEVAEYVQGG 466 Query: 537 MLVLFASGRAMQRFLDYV--TDLRLMLLVQGDQPR----YRLVELHRKRVANGERSVLVG 590 M V F S A+QR + ++R +V+ + R RL EL R+ +L+ Sbjct: 467 MAVFFPS-YALQRDIAVYLPEEVRRKAIVERREMRKEEKNRLYELLREDSG----GILLA 521 Query: 591 LQ--SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 +Q SF+EG+D + ++L + + + P V EG + +Y E L + Sbjct: 522 VQGGSFSEGMDFESNMLKAIIVVGLPLSPPTLEVKTIEGYY---AGKYGAEKGKLYGYYY 578 Query: 649 ----NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 ++Q GR IRS +V+ D R Y Sbjct: 579 PAITKVLQAAGRGIRSEHDRCIIVLMDYRFAKYPY 613 >UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococcus infernus ME RepID=C5U5Q1_9EURY Length = 630 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 + ++ P R PQ++M+ + ++ +HL +EAPTGVGKTL+YL+P I A E+ K Sbjct: 7 VSKKFPYSTIREPQKKMMLSIYNSIINR--KHLIVEAPTGVGKTLAYLLPAIYFA-EQGK 63 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 +++ T + Q +I+ + L ++ +LK + G Y C Sbjct: 64 RILILTETIDQQKRIFDE----LNRLNHNLKVSYLMGIRNYTC 102 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 23/152 (15%) Query: 538 LVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELH-RKRVANGERS---------- 586 L+LF S ++ F +Y+ LR+ D+ R ++H +R +GE + Sbjct: 448 LILFKSFEDLENFYNYLK-LRI------DKLNLRNKKIHVYERGMSGEEAKELQERFKKE 500 Query: 587 --VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL-KSLNRY-PFEVQS 642 +L+ F+EG+D G+ L V I + FP + +P++ E E L K + + F + S Sbjct: 501 GGILLATGRFSEGVDFPGETLVGVIIDSLPFP-VPTPLLKKEREILMKRVGSWEAFLLTS 559 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 + L+Q +GRLIR+ +G VVI DKR Sbjct: 560 FDRMAKTLVQMIGRLIRTEKDYGVVVIQDKRF 591 >UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=Methanococcales RepID=Y942_METJA Length = 651 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 7/103 (6%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 ++E+ P R PQ++M+ + + + + R+L +EAPTGVGKTL YLIP + A E +K Sbjct: 7 IKEKFPYPKVREPQKRMMLKIYECIKNK--RNLIVEAPTGVGKTLGYLIPALYFA-ERRK 63 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 +++ T + Q +IY +DL L+ +LK G+ ++C Sbjct: 64 RVLILTETIDQQVRIY-EDLSSLRH---NLKVAFLMGKSNFIC 102 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 40/261 (15%) Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK---EKAGDRFVALDSP 491 C + VS L+ L ++ +I SAT+ +L +M LK +KA F+ L+SP Sbjct: 371 CEPVFVSSHLKELYGNAV--VIHCSATIGNL-------KMHALKTGLDKA--EFLILESP 419 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F + KI+ + V+ + +++ A ++ + LVLF S + F Sbjct: 420 FPK-NRKKIIALKDGVDMKYERKDREKANKNLL---KILEAINGNSLVLFKSFEDLDSFY 475 Query: 552 DY---------VTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 Y + + + + QG + EL + G +L+ FAEG+D+ G Sbjct: 476 KYLKREITKTNIKNKNIHVYEQGMDGK-EAKELKERFEKIG--GILLATGRFAEGVDIPG 532 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY---------PFEVQSLPSASFNLIQQ 653 + L V I + FP + +P+++ E + L+ + F + S + L+Q Sbjct: 533 EALVGVVIDSLPFP-VPTPLILREQKILEERFKIRGVRDAHWRAFLMTSFDRMARTLVQM 591 Query: 654 VGRLIRSHGCWGEVVIYDKRL 674 +GRLIR+ +G VVI DKR Sbjct: 592 IGRLIRTENDYGVVVIQDKRF 612 >UniRef50_D2MHS9 Helicase c2 (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MHS9_9BACT Length = 150 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%) Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE-AVLPD 239 DD+W R+S + SC C +Y C FF +RRE+ A V+VANH ++ + + + A PD Sbjct: 25 DDVWDRVSAESESCPGTKCPHYSSCFFFKSRRELSRASVLVANHHMLFSDIAIKGAAGPD 84 Query: 240 ------PKNLLLVLDEGHHLPDVA 257 P+ +V DE H++ + A Sbjct: 85 SDFGIIPRYAKVVFDEAHNIAEAA 108 >UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus RepID=A4VTT3_STRSY Length = 837 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 148/678 (21%), Positives = 250/678 (36%), Gaps = 153/678 (22%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q V K L EE H I+A G+GKT YL+P +A + + L+V+ Sbjct: 266 RKKQTAFAQVVEKRLVDEEKVHF-IQAQAGLGKTYGYLLPLLA---KSDQPLLVTVPTKL 321 Query: 88 LQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ---------- 135 LQ+QI K+ LK+I IP + + P++ L + T Q Sbjct: 322 LQEQIMEKEGSKLKEIFRIPIVSLKS---------PKHFIKLDNYWKTLQRQDDNRLVNQ 372 Query: 136 ---DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 +L +L E T + +E K+ + + D DG + + D W+RL+ Sbjct: 373 FKMQVLVWLC-ETTTGDLDELKQKQRYQAYFDEIAHDGKLEPESLFWGLDFWQRLNQQAL 431 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 S + +++ NHA ++ ++ + P ++V+DE Sbjct: 432 S-----------------------SRLLITNHAYFLSHLKDQD--PHMDKRMVVIDEAQK 466 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 A + S ++T+ LQ K + +RL C+ Sbjct: 467 FLLAAENLATASQDLTSMLQVLQ---------------SKKDRATAILDQRLYESCQ--- 508 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 LN+ L+ + GQ + L +L + L L ++ LNDL + Sbjct: 509 ---FELNHFLSRFRQHGQREVQK--------------AELHQLGQNLEELGDVDLNDLHQ 551 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 +D L L+ R + ++ L L ++ P TK Sbjct: 552 LIDYYDTFWLEEKNLEEKRLAYLRSSKDSL-----LNATNYLPDTK-------------- 592 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD-SP 491 I SATL +++ L ++ G ++ V LD P Sbjct: 593 ----------------------IFCISATL-TISKKVSLADLLGFEQ------VTLDLIP 623 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG--MLVLFASGRAMQR 549 +++ P + +E+H A +A + E LG +LVLF S + + Sbjct: 624 TQTVTNQRLLFPTHLPDILAWTKEEHAAYLATTLGEIAE----LGRPILVLFTSISMLLQ 679 Query: 550 FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 D + D + L Q + + +++ GE +L+G F EG+D +Q+ Sbjct: 680 VSDLLEDNNIPHLAQHKHGQEMTL---KRKFERGECQILLGTGVFWEGVDFASQ--NQL- 733 Query: 610 IHKIAFPPIDSP---VVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 I I P D+P V L+ + PF SLP L Q +GR R Sbjct: 734 IQVITRLPFDNPKDRFVQKINHHLREEGKNPFYDYSLPMMMIKLKQAIGRTNRHDKQDSL 793 Query: 667 VVIYDKRLLTKNYGKRLL 684 V++ D R+ TK YG+++L Sbjct: 794 VLVLDPRVHTKRYGQQIL 811 >UniRef50_C4M6T8 DNA repair helicase, putative n=2 Tax=Entamoeba RepID=C4M6T8_ENTHI Length = 1033 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 114/549 (20%), Positives = 219/549 (39%), Gaps = 112/549 (20%) Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDP-----KNLLLVLDEG 250 C + CP++ AR +++++ + V + S+ L D + +LV+DE Sbjct: 243 CQKHNLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFVLVMDEA 302 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H++ D D+L + L + + T QF K I PE L Sbjct: 303 HNVEDAFMDSLT---------FNFTESLLNQTIETI--QFHKKRIK--QTPENL-LTISL 348 Query: 311 LYELIASLNN----ILNLYMPAGQEAEHRFAMGELPDEV-LEICQRLAKLTEMLRGLAEL 365 L ELI+++ + + N +P +++EH + G D+ L +R + +L ++E Sbjct: 349 LTELISTVESFSIWMKNRSLPY-KDSEH-YLYGVFEDQAFLPFVERSPSSSRLLEAISEY 406 Query: 366 F-----LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 L+DL T ++R + +F Q ++R +L + +T + Sbjct: 407 IKVVDNLDDLDIFTREPHVIRYINSFTTQYIEMILFYIQ--VFRTPTLTKFFKIVITDY- 463 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 G + F C+ + L +++ RS+ I S TL + + + QE+ +KE Sbjct: 464 -----NGLREMLFRCLSPSLPMSLLQIVVRSV---IFASGTLSPMKAMA--QEL-DIKEH 512 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRV------------------EPSIDNEEQHIAEMA 522 F+ SP + V+P RV + S DNE + E A Sbjct: 513 VYKDFII--SPGYRMLSTEHVVPPSRVFGRIIISSSLGKSFIFTKKTSQDNE---MIEQA 567 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDY---------VTDLRLMLLVQGDQPRYRLV 573 +V SK G LV F+S + R ++ + L+ + + D+ ++ Sbjct: 568 GDTMFRVLSKSPGGALVFFSSYNMLNRIVELWKQHGIYTQLNKLKAIFIESKDKSEFK-K 626 Query: 574 ELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPI------------- 618 + ++ + + +V +G+ +EG+D D+ V + I +P + Sbjct: 627 DFKEYQIQSKKGAVFLGVFRGKLSEGIDFGDDMARLVIVVGIPYPSLGDINVNLKREYNS 686 Query: 619 ----DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 +P ++ EW + +Q+L + + Q VGR+IR +G +++DKR Sbjct: 687 HENLKNPDCLSGSEW--------YSIQALRAVN----QAVGRVIRHINDYGAFLLFDKRY 734 Query: 675 LTKNYGKRL 683 T + + L Sbjct: 735 STNSVKEML 743 >UniRef50_C8X8L4 Helicase c2 n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8L4_NAKMY Length = 778 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 111/275 (40%), Gaps = 49/275 (17%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F PRA Q + V + E+ A+EAPTG GKTL+YL A + V+ST Sbjct: 23 FRPRAAQLDLSCRVLAAM--EQTGQCAVEAPTGTGKTLAYLASAALRAARCDERTVISTE 80 Query: 85 NVALQDQIYSKDLPLLKKIIPDL---KFTAAFGRG--RYVCP----RNLTAL-----AST 130 +++LQ QI KD P++ + + + + A +G C R L AL A Sbjct: 81 SLSLQQQIADKDAPVITEAVESVTGQSVSVAVYKGWQNTACAMSAVRVLQALLDDFHAPV 140 Query: 131 EPTQQDLLAFLD------------DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 T+ LL D +T + Q R A L W LR + Sbjct: 141 PVTRDGLLDLADAAEEAVSGMPTRTRITVDGQLTDPRDA-----LGPAAW-ALRASATVG 194 Query: 179 ----------IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALV- 227 I + W+ +S CL C C A++ A++VV NH L+ Sbjct: 195 PADRPSYPHPITERQWQSVSVSATDCLRNRCPLLEFCRPLAAKQRASTADLVVTNHTLLG 254 Query: 228 MAAMESEAVLPDPKNLL----LVLDEGHHLPDVAR 258 + A + V+ ++L +V+DE H LPD R Sbjct: 255 IQAAKKVPVVLSSRSLGRFHHIVVDEAHGLPDAVR 289 >UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NXQ7_9BACE Length = 684 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 38/266 (14%) Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK----AGDRFVALD---SPFNHCE 496 + RL + I+TSATL + S S ++ S AGDR + SP+ + E Sbjct: 415 VSRLYFNGDERTILTSATLTNATSGSLEEQYSYFISNTGFPAGDRGCLSEPKPSPYPYDE 474 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE------SKKHLGMLVLFASGRAMQRF 550 I D+ E AF K VE S + LVLF + M+ Sbjct: 475 HAMIYY--------CDDLPHPTREHDAFIEKGVERLLEILSISNGKALVLFTAKTDMEEV 526 Query: 551 LDYVTDLRLMLLVQGDQPRYRLVELHRKRVAN----GERSVLVGLQSFAEGLDLKGDLLS 606 +++ L + QP + +V N SVL+G ++ EG+ ++G LS Sbjct: 527 YSILSEKNLPYKILMQQPGS-----SQDKVLNEFKEDTNSVLLGTGAYWEGISIEGKSLS 581 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I ++ FP D P++ E+ S+ + +P L Q +GRLIR+ G Sbjct: 582 NVIIFRLPFPVPD-PII----EYKCSVAKDALMDVRVPEMIIKLKQGIGRLIRNFTDTGI 636 Query: 667 VVIYDKRLL---TKNYGKRLLDALPV 689 V I D+RL ++ Y D+LP+ Sbjct: 637 VCIIDRRLRDEPSERYHDITWDSLPI 662 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 32/239 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q+ M ++ L ++ H AIEA G+GK+ YL+P + ++ K ++++T+ +A Sbjct: 48 REGQQDMSFEIVDALINDQ--HFAIEAGVGIGKSFGYLVPVLLYSKRMNKPVIIATSTIA 105 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC-PRNLTALASTEPTQQDLLAFLDDELT 146 LQ+Q++ ++ + + A G+ Y+C R + + D L E Sbjct: 106 LQEQLWRDVHTVMPLLGLNRDVILAKGQTHYLCNKRADEYMCDPKADPPDALK----EGI 161 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 EE+K ++ L WD + +R S + C YY+ Sbjct: 162 KQGYEERKVFPEV---LPQGVWDKVN-----------VQRFSMKNCGSCEKKCKYYK--- 204 Query: 207 FFVARREIQEAE-VVVANHAL----VMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 R ++ + VV+ N +M + L + LLV+DE H+L D R A Sbjct: 205 ---VRAALKFTDGVVLCNQDFLTQHLMKLRRGQDGLINAAADLLVVDEAHNLDDKVRSA 260 >UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF23_9LACT Length = 875 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 11/214 (5%) Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 KA + +DS N I IP V + + Q+ E A+ +Q+ + MLV Sbjct: 645 KAQENLTIMDSKVN-SHAHHIFIPNDLVSVTAASSNQY-HEQIAYCIQQIYERNGGRMLV 702 Query: 540 LFASGRAM----QRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 L S A+ + ++Y + LL Q R ++ +R S+L+G+ SF Sbjct: 703 LMHSIEALMAVEELMVNYCKRNHIELLAQKGSQLGRKIQ---RRFQEKSDSILLGVYSFW 759 Query: 596 EGLDLKGDLLSQVHIHKIAFP-PIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG D G ++ + I K+ FP P+ + I + E +K NR F S+ L Q + Sbjct: 760 EGFDSGGVSINSLVITKLPFPNPVTTHQQIVQLE-MKEQNRSYFAQYSIKMMLLQLYQGL 818 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 GR R E+ I D R Y ++ + P Sbjct: 819 GRFSRPTQKNAEIWILDVRASISKYSDKVKNIFP 852 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 46/230 (20%) Query: 31 QRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQD 90 QR++I + +TL EE H IEAP G GKT +YL+ + A + +V T+N+ LQ Sbjct: 255 QRKIIKKILETLEEEEPIHF-IEAPPGSGKTYAYLLAALEKATNQNPIWIV-TSNLLLQQ 312 Query: 91 QIYSKD-LPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNN 149 Q+Y LP++ + + G+ Y+ DL AF Sbjct: 313 QLYEDSVLPIVSALKIKNPIVSIKGQRNYI----------------DLEAF--------- 347 Query: 150 QEEQKRCAKLKGD---------LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + ++LK D + W + D++ + + + S K C+ N Sbjct: 348 ---SYKISQLKNDKSPRVSLSVMGLVVWITETETGDLSECNQVLYQSSLWKDICVKENSK 404 Query: 201 YYRECPFFV-ARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 +E ++ A + +Q++ +VV NHA ++ + + P +++LDE Sbjct: 405 --KESLYWTKAVQSVQKSNIVVTNHAFLIHYASTMSYQTKP---IVLLDE 449 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 10/169 (5%) Query: 537 MLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAE 596 +LVLF + + D +T L GD V +KR GE+ +L+G SF E Sbjct: 647 ILVLFTAKDMLLAVSDLLTVSHLAQYKNGD------VHQLKKRFEKGEQQILLGAASFWE 700 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D + ++ F P+ + L + F LP A L Q +GR Sbjct: 701 GVDFSSHPFVIQVVPRLPFQNPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGR 760 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL----PVFPIEQPEVPEGI 701 +R +I D+R++ K YGK+++ +L V I + EV E I Sbjct: 761 SMRREYQRSLTLILDRRIIGKRYGKQIVASLAEEATVKTISRSEVDEAI 809 Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 2/53 (3%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII 104 I+APTG+GKT YL+P ++ ++E Q +V+S LQ+QI ++ LK++ Sbjct: 268 IQAPTGIGKTYGYLLPALSQSKERQ--IVLSVPTKILQNQIMEEEGKRLKEVF 318 >UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei RepID=Q57ZK3_9TRYP Length = 963 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 25/247 (10%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F P Q + + V L G + +E+PTG GKTL L+ G+ +E++ +++ Sbjct: 15 FAPYPVQEEYMRSVIYALKGSH--NALLESPTGTGKTLC-LLCGVLAWLDERRICFLNSG 71 Query: 85 ---NVALQDQIY-SKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 +L +Y S+ L ++I + K R RY ++ L S +D + Sbjct: 72 ISDRTSLLRVVYCSRTHAQLSQVIREFK------RTRYSSIFSMAVLGS-----RDHMCL 120 Query: 141 LDDELT-PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID--DDLWRRLSTDKASCLNR 197 L P++ ++K C++L+ D + + G D D+LW D S R Sbjct: 121 NSQVLQLPSSHAQRKLCSQLREDRNCRFYRGYEARAAGRKDFPDELWIHDMEDLVS-EGR 179 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C + CP++ R ++A+VV + V + + + +L++DE H+LP V Sbjct: 180 KCGF---CPYYYERDAAKDADVVFLPYNYVFDVSFRKQLPFELSGSVLIVDEAHNLPSVL 236 Query: 258 RDALEMS 264 A M+ Sbjct: 237 GSASCMN 243 >UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=B8I7B6_CLOCE Length = 790 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 16/235 (6%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 + SATL +N F + + G KE D + L SPF+ + +I + + + Sbjct: 532 VFFSATLTPVNYFMDI--LGGDKE---DYNINLASPFD--KDNLCLIVNDNISTRYKSRD 584 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQGDQPRYR 571 + ++ + SK+ +V F S + M RF + + ++ R Sbjct: 585 KSYDKIVDIIWSSI-SKRTGNYVVFFPSYKYMNEVYTRFTEQYPETNTIIQETSMTEEER 643 Query: 572 LVELHRKRVANGERSVLVGLQS--FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L+R + + V G+ F+EG+DLKGD L I + P + SP ++ Sbjct: 644 ESFLNRFQSGTEKSLVSFGVLGGIFSEGIDLKGDRLIGAIIVGVGLPQV-SPEQNIIMDY 702 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684 K+ NR FE + ++Q GR+IRS G V++ D+R NY +RL Sbjct: 703 FKNKNRMGFENAYMYPGMNKVLQAAGRVIRSEHDVGTVILLDERFSNGNY-RRLF 756 >UniRef50_C4XCX5 Putative uncharacterized protein n=2 Tax=Klebsiella pneumoniae NTUH-K2044 RepID=C4XCX5_KLEPN Length = 331 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 100/244 (40%), Gaps = 40/244 (16%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI-AREEQKTLVVSTANV 86 R Q+ I A L + L I A TGVGKTL YL+P + I + + V++T + Sbjct: 26 RKVQQDYIEAAAGALTQDHKVAL-ISAETGVGKTLGYLVPALLILLKNPEAKFVIATNSH 84 Query: 87 ALQDQIYSKDLPLLKKIIPD----LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 AL QI+ D PLL++I + F+ G+ YV + L L Sbjct: 85 ALMHQIFRSDRPLLEQIAEQCGIKVTFSRLMGKVNYVSLEKVRGL------------LLM 132 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYK-WDGLRDHTDIAID-DDLWRRLSTDKASCLNRNCY 200 DE T DLDT K + L + + ++ ++ + L + Sbjct: 133 DEFT---------------DLDTVKVLEKLANWSKPLVEFEEEYGELPAQITPEMVTYSI 177 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMA-AMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 + R A +V HA+VM M + +L D +N+ L++DE D+ D Sbjct: 178 WDDIQDIDDIRLNALSANFIVTTHAMVMVDCMCNHRILGDKENMYLIIDEA----DIFVD 233 Query: 260 ALEM 263 LE+ Sbjct: 234 MLEV 237 >UniRef50_B5IHH7 DEAD_2 domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IHH7_9EURY Length = 619 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 34/250 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q+ ++ D+ + L E H+ EAPTG GKT++ L P + A + K ++ + Sbjct: 8 RKGQKDIVKDIEEVL--ENRMHMVFEAPTGSGKTIATLYPAVKYAIKNDKKVIYLVHTNS 65 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP--RNLTALASTEPTQQDLLAFLDDEL 145 + Q+ + L +++ A GR +CP R L P D LA L ++L Sbjct: 66 QERQVIKEAKKL------EIRAIALQGRAN-LCPLARERNELQHGSP---DELALLCNKL 115 Query: 146 TPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI--AIDDDLWRRLSTDKASCLNRNCYYYR 203 + +E + Y + L++ DI I+++ +KA L + Sbjct: 116 KKDVKEGNENAC-------IYYANYLKNGNDIRKIIEENPTAEEFFEKAMNL-------K 161 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD----PKNLLLVLDEGHHLPDVARD 259 C + + + +A V+V + ++ +++L++DE H++PD AR+ Sbjct: 162 ICAYEAIKDALPDATVIVFPYIYFFFPFIRRGIMDKIGVPMGDIILIVDEAHNIPDFARE 221 Query: 260 ALEMSAEITA 269 M + + Sbjct: 222 LKSMELSVNS 231 >UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lactobacillus RepID=Q1WV23_LACS1 Length = 788 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 21/235 (8%) Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 ++ SATL LN + QEM GL + + L SPF+ ++ + V + + Sbjct: 534 VLFSATLSPLNYY---QEMFGLIDNS--LLYQLSSPFDESNLNLLITSYIPV--TYQQRQ 586 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL----MLLVQGDQPRYR 571 Q + ++ + +K+ G ++F + + + ++ + D R + Sbjct: 587 QSLGKIIDAIHTMIATKQ--GNYLIFLPSYTFLKQVVVAFNQAYPHIDTVIQENDMTREQ 644 Query: 572 LVELHRKRVANGERSVLVGLQ----SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 + V N + +LVG SF+EG+DLKG+ LS V I + P + + Sbjct: 645 QEDFLNYFVENPTK-ILVGFAVLGGSFSEGIDLKGNRLSGVAIVSVGLPKLSKETNELQS 703 Query: 628 EWL-KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGK 681 + K + + + Q LP + N+ Q GR+IRS G V++ D R T Y K Sbjct: 704 YFNNKQKDGFQYAYQ-LPGLN-NIFQAAGRVIRSSTDVGVVLLIDNRFATSRYAK 756 >UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67KS2_SYMTH Length = 656 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 89/224 (39%), Gaps = 36/224 (16%) Query: 46 EGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYS--KDLPLLKKI 103 EG L EA G GKT +YL+P + AR + +VV++A+ L+ Q+ D+ L ++ Sbjct: 58 EGSTLLAEAGPGTGKTFAYLLPAVCHARMRGRPVVVASASSVLKAQLTGPDGDIQTLSRL 117 Query: 104 IP-DLKFTAAFGRGRYVCPRNLTA--LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK 160 + D+ A YVC + A S E P E A+ Sbjct: 118 LNLDIDVRVAGNPADYVCEMKVEAGDFGSGE--------------EPEGWSELIHWARRT 163 Query: 161 GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFF-VARREIQEAEV 219 G G R + DDLW +S D + + C C R+ A++ Sbjct: 164 G-------TGARSEVP-GVPDDLWELVSWDPSLNCD-TCPRRGHCLMVAARRQHRAAADL 214 Query: 220 VVANHALVMAAMESE------AVLPD-PKNLLLVLDEGHHLPDV 256 VV +H L + + +LP P ++ DEGHH P+ Sbjct: 215 VVCDHRLFAQDLLTRNDLLEGGMLPILPSYSAVIFDEGHHFPET 258 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 6/128 (4%) Query: 561 LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDS 620 ++ +GD R +E R V SVLVG F EG+D++G+ LS V + + FP D Sbjct: 513 VIYEGDGDRGAQLERFRAEV----DSVLVG-AGFWEGVDVRGEALSCVILPYLPFPEHDP 567 Query: 621 PVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYG 680 + G+ ++ + PF LP L Q +GRLIR+ G + + D+ ++ Sbjct: 568 LIRERRGQ-AQAAGQDPFRAVDLPEMLIKLKQGMGRLIRTAEDRGVIALLDRSYRGADWA 626 Query: 681 KRLLDALP 688 + +A P Sbjct: 627 GAVEEAFP 634 >UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C6D1G2_PAESJ Length = 773 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 120/532 (22%), Positives = 209/532 (39%), Gaps = 86/532 (16%) Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 G D + AI D L S + + R Y + CPF + A+ V+ ++ + Sbjct: 298 GYYDRINGAILDMLGNEASMTR-EVIERYAYKHHVCPFEFSLDAAYAADAVICDYNYIFD 356 Query: 230 AMESEAVLPD--PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCM 287 + L + + L++DE H+L D AR+ SAE+ + L+L Sbjct: 357 PRVNLKRLFEEQKRKTALLVDEAHNLVDRAREMY--SAELRKADF-LEL----------- 402 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE 347 Q KTI PL + + A + L S+ +G+EA LP++++E Sbjct: 403 -QRASKTIRPL-VYQSAKAVNQYFIALRKSIEE-------SGKEATGTNMERYLPEQLIE 453 Query: 348 ICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS 407 + L + E LA+ G D + L ++ R+A Sbjct: 454 QLETLVQAAE--EQLAQ----------GDQDPL-----------LLDVYFGCQHFLRIAK 490 Query: 408 LAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS 467 L +A +E + ++ L+ C+ L R + I+ SATL L+ Sbjct: 491 LYDER---YVTYAEKERNDVRMKLF--CLD---PSYLLRQYAKGYKAQILFSATLSPLHY 542 Query: 468 FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 F + + G E D VA+ SPF+ EQ + I ++ + E+ + +A R Sbjct: 543 F--MDMLGGDAET--DYAVAIPSPFS-SEQLDVRIEKLSTR--YQDRERTMDRVAGLLRS 595 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGER-- 585 VE +H G +++F A +L+ V + + L + ++ + R + ER Sbjct: 596 TVE--RHQGNILVFFPSYA---YLNGVYERFMELPLSEEESATFTAMVQRPNMPEEERDA 650 Query: 586 ----------SVLVGLQS----FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 + LVG F+EG+DL GD L+ V + + P + I + ++ Sbjct: 651 FLAAFAPDNNNTLVGFAVMGGIFSEGIDLVGDRLTGVAVVGVGLPQVGLERNIIK-DYFD 709 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 + FE + ++Q GRLIRS G +++ D R Y + L Sbjct: 710 RQGKNGFEYAYVFPGMNKVLQAGGRLIRSESDRGMLLLIDDRYAHPQYARLL 761 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 RA QR++ A +T+A +GR L +APTG+GKT+S L P + EE+ Sbjct: 192 RAGQRKLAASAYQTIA--DGRKLFAKAPTGIGKTMSTLFPAVKAIGEER 238 >UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BJL1_9LACT Length = 873 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 561 LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDS 620 LLVQ R V+ ++ E +L+G+ SF EG D + Q+ I K+ FP + Sbjct: 729 LLVQRTNQSSRKVQ---RKFQQQESVLLLGVYSFWEGFDSGEVSIDQLIIPKLPFP---N 782 Query: 621 PVVITE---GEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK 677 P + + E +K NR+ F+ +L Q +GR+ R H E+ I D R + Sbjct: 783 PTQLQQRVIAEEMKLQNRHYFQDYALEKMLQQFYQGLGRMNRPHQEKAEIWILDTRSINS 842 Query: 678 NYGKRLLDALP 688 Y R++ +P Sbjct: 843 PYANRVMQCIP 853 >UniRef50_A0CAB5 Chromosome undetermined scaffold_161, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CAB5_PARTE Length = 722 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 110/520 (21%), Positives = 220/520 (42%), Gaps = 61/520 (11%) Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLLVLDEGHHL 253 L +N Y +CP+F AR +++A +VV N+ ++ S + D K ++V DE H++ Sbjct: 174 LRKNGAYSIQCPYFTAREMVKKANIVVYNYLYLIDPTVSSQLTKDQIKESVVVFDEAHNI 233 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 DV +A + + P ++ K+V T Q + +T I RLN EE + Sbjct: 234 DDVCIEA--YTVRLNKPILAEAINNL-KVVET---QIQSETNE---IQNRLN---EEYKK 281 Query: 314 LIASLNNI----LNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 LI +L LN + GQ + R + + + + ++L +E L+ + N Sbjct: 282 LIKNLEKKPEGELNQLVIPGQIRKARNFIDFMKRVINSLRKKLKDNSEALKTSHAILHNT 341 Query: 370 LS-----EKTGSHDIVRLHRLILQMNRALGMFE-AQSKLWR-LASLAQ--------SSGA 414 +K G+ DI L + ++N L + A++ +R L+S+AQ G Sbjct: 342 KGFTEEIQKEGNLDIDSLKQCGERLNLLLNTLQIAETDKFRPLSSVAQFVMYLVQYQEGF 401 Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEM 474 V + EG L+ + S + ++ +I+TS T+ + + ++ + Sbjct: 402 KVIFQSNN--YEGTLNEKLMTLACFDSSLAMKNIFAQFQSVILTSGTMSPIEIYPKILDF 459 Query: 475 SGLKEKAGDRFVALDS----PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 + K+ D + +S E G + E ++ N E F + E Sbjct: 460 KPVVAKSIDIELTRNSIQPIIVTMSEDG----TELTSEFTLRNNEDVSRNYGNFLLELSE 515 Query: 531 SKKHLGMLVLFASGRAMQRFL---DYVTDLRLMLLVQGDQPRY-RLVELHRKRVANGERS 586 + G++V S M+ + + + +++ + D + ++ +RK G + Sbjct: 516 NVPD-GLIVFMPSYSRMEEWASIWNKFSKNKVLFIESKDVAETSQKLQQYRKCCDVGRGA 574 Query: 587 VLVGLQ--SFAEGLDLKGDLLSQVHIHKIAFPPIDS--PVVITEGEWLKSLNRYPFEVQS 642 L + AEG+D +G V + I FP ++S +++ ++L+ F++ Sbjct: 575 ALFSIARGKIAEGIDFEGHYGRCVAV--IGFPALNSKDTLILERCKFLEE----KFKITK 628 Query: 643 LPSASFNLIQQ----VGRLIRSHGCWGEVVIYDKRLLTKN 678 F+ ++Q +GR++R +G +++ DKR K+ Sbjct: 629 NDFIEFDAMRQTCQCLGRVLRGKQDYGIMIMADKRFAQKS 668 >UniRef50_Q6MR44 Similar to ATP dependent helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MR44_BDEBA Length = 792 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 28/255 (10%) Query: 441 SDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK-EKAGDRFVALDSPFNHCEQGK 499 S+QL ++ ++ +++ SATL+ F+ QE+ G EK+ + + SPF + Sbjct: 521 SEQL-KIAYKQFKNVVAFSATLKP---FTYYQELLGFDLEKS--KTLEFQSPFKPENRQL 574 Query: 500 IVIPRMRVEPSIDN--EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 ++IP++ + S D +AE+ + +V K + LF S + + + Sbjct: 575 MIIPQISTKLS-DRVVSSGKVAEVIS----RVTRVKAGNYIALFPSFEFLAQVEKQLQVP 629 Query: 558 RLMLLVQGDQPRYRLVELHRKRV-ANGERSVLVGLQS--FAEGLDLKGDLLSQVHIHKIA 614 L +L Q + V+++ + + A E +L+G+Q F+EG+D GD+L + A Sbjct: 630 HLRVLRQERDMKQLDVQIYLEELKAANEPILLLGVQGGVFSEGVDFPGDMLIGAFVIGPA 689 Query: 615 FPPIDSPVVITEGEWLKSL--NRYP----FEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 P D E E +++ RY F + A IQ GR+IRS G ++ Sbjct: 690 LPSFD-----FEREQIRTYFDGRYGKENGFNYTYVYPAMAKAIQSAGRVIRSETDKGVII 744 Query: 669 IYDKRLLTKNYGKRL 683 + D R L Y + + Sbjct: 745 LMDSRFLNPVYAEAM 759 >UniRef50_Q4FXD6 Helicase, putative n=5 Tax=Trypanosomatidae RepID=Q4FXD6_LEIMA Length = 953 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 51/255 (20%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F P Q + + V K L + G + +E+PTG GKTL L + + V+ A Sbjct: 16 FDPYPAQVEFMRSVVKCL--QNGFNGLLESPTGTGKTLCLLCSTLGWLSATSQGAVLRHA 73 Query: 85 NVALQDQ----------IY-SKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPT 133 + QDQ +Y S+ L +++ +LK R Y + L S E Sbjct: 74 SD--QDQKGRGKHNHKVVYCSRTHAQLTQVVRELK------RTSYAQRFTMAVLGSREHM 125 Query: 134 QQDLLAFLDDELT--PNNQEEQKRCAKLKGDLDTYKWDGLRDHT--------DIAIDD-- 181 L+ E+T P++Q + C+ L+ + + + GL+ + A+ D Sbjct: 126 ------CLNKEVTRLPSSQAQHAMCSALRLERNCRFFSGLQSAAAGASLLPPECAVHDME 179 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK 241 DL R S R+ + CP+F R ++A+VV+ + V+ + + + Sbjct: 180 DLMREGS--------RSGF----CPYFHERDAAKDADVVLMPYNYVLDPSLHKQLPFELA 227 Query: 242 NLLLVLDEGHHLPDV 256 N +L++DE H+LP V Sbjct: 228 NCILIVDEAHNLPSV 242 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 22/267 (8%) Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 I++++ L ++ + S T+++L+ + + D F ++ F+ Sbjct: 590 SIKLNEILTNRIFDRFTSKVFVSGTMQTLSFLEQFH-------PSLDHFYKYENTFSKY- 641 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 + + +P ++Q+I + +E+ +L+L S R ++ Y+ + Sbjct: 642 KATLFVPSDIQNYHYMKQDQYIESCLQYIHYYLENMSS-KVLILMNSYRQIEILRSYLVE 700 Query: 557 L---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKI 613 L L++ D +L E + NG + + Q+F EG+D K D V I + Sbjct: 701 LYDPSLIITQTSDVNTLKLNE-QFNTLDNG---IFLATQTFYEGVDFKYDGFKTVMIISL 756 Query: 614 AF-PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 F P D +++ E +N + Q LP A L Q GRLIR+ G ++ +D+ Sbjct: 757 PFMHPDDLNIMLMRDE----VNDVFMDYQ-LPGAVNKLHQATGRLIRNEQDKGMLICFDR 811 Query: 673 RLLTKNYGKRLLDALPVFPIEQPEVPE 699 RLL Y L F ++ + + Sbjct: 812 RLLEGRYASYFSHILKSFDVKSGTIED 838 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 50 LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDL 97 L IEA G GKT+SYL+ + +K+L++ST+ + LQ+Q+ +DL Sbjct: 268 LTIEADLGGGKTISYLLAAVYYLSTYRKSLLISTSTIFLQNQLIDEDL 315 >UniRef50_C6NY64 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NY64_9GAMM Length = 726 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 39/223 (17%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII---PDLK 108 IEA TGVGKT+ YL+P + A + +K + +ST Q Q+ +KDL L+++ I DL+ Sbjct: 60 IEAGTGVGKTIGYLVPLLEYASQHKKRVGISTYTRFQQRQV-AKDLALVQQRIFDGLDLQ 118 Query: 109 FTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW 168 GR +V ++ +AF + L + K D + W Sbjct: 119 VAIRLGRQNFVS--------------RERVAFWRERLKGTDLP--------KAWEDFFAW 156 Query: 169 DGLRDHTDIAIDDDL--WRRLSTD--KASCLNRNCYYYRE----CPFFVARREIQEAEVV 220 D + +D WR + D + S L + RE + + Q A+VV Sbjct: 157 VDRWDESTDPLDTTFLAWREIYPDMPEFSGLAEEDFALREDEPHAWYEAHAKAAQSADVV 216 Query: 221 VANHA--LVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 + NHA L+ A+++ +L D +V+DE L A+ L Sbjct: 217 ITNHATLLIHGALKT-GLLGDLDA--VVVDEADQLISAAQSLL 256 >UniRef50_D1PKE8 ATP-dependent helicase DinG n=3 Tax=Bacteria RepID=D1PKE8_9FIRM Length = 184 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%) Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS----LNRYPFEVQ 641 +VL + EG+D GD++S + I ++ F P+ P+ GE L++ L+ Y + + Sbjct: 34 AVLFASGACWEGVDFPGDMVSLLVIPRLPF-PVPDPL----GEALRTQYGDLHSY-IQTE 87 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN-YGKRLLDALPVFPI 692 +P L Q GR IR+ G V I D R Y + +LDALP P+ Sbjct: 88 IVPEMQIKLRQGFGRAIRTETDSGVVAILDPRAAPGGRYHRAVLDALPEMPV 139 >UniRef50_Q9BX63 Fanconi anemia group J protein n=28 Tax=Euteleostomi RepID=FANCJ_HUMAN Length = 1249 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 203 RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALE 262 + CP++ AR IQ+A+++ + ++ A E++ + K +++LDE H++ D AR++ Sbjct: 348 KACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESAS 407 Query: 263 MS-AEITAPWYRLQLD 277 S E+ + R +LD Sbjct: 408 YSVTEVQLRFARDELD 423 >UniRef50_D1PKE7 Putative helicase c2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKE7_9FIRM Length = 494 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 95/232 (40%), Gaps = 44/232 (18%) Query: 47 GRHLAI-EAPTGVGKTLSYLIPGI----AIAREEQKTLVVSTANVALQDQIYSKDLPLLK 101 GR +A+ +A G+GKT +YL+ + R Q+ +V+STA++ LQ+ I + +P L Sbjct: 50 GRDVALCDAGVGLGKTYAYLVACVLWQLQRPRPMQRPVVISTASITLQNAILEEYIPFLS 109 Query: 102 KIIPDLKFTAA-------FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQK 154 + + A G+ R+VC L ++T + +K Sbjct: 110 DALIQNGYIQAPVCAVLRKGKERFVCDVRLL--------------IRQKQITARGKRFRK 155 Query: 155 RCAKL---KGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPF--FV 209 R L + LD + L H RRL + C R+C + +C + ++ Sbjct: 156 RAPALQEARQCLDLDRLPNLPRHE---------RRLICVPSRC-ARSCIAHTDCRYRQYL 205 Query: 210 ARREIQEAEVVVANHALVMA--AMESEAVLPDPKNL-LLVLDEGHHLPDVAR 258 + V NH ++A A P K+ LV+DE H LP+ R Sbjct: 206 KASNGPSVTIQVCNHNYLLADAAHRKNGWTPLLKDYQALVIDEAHKLPETVR 257 >UniRef50_UPI0001796C3E PREDICTED: similar to BRCA1 interacting protein C-terminal helicase 1, partial n=1 Tax=Equus caballus RepID=UPI0001796C3E Length = 1218 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 203 RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALE 262 + CP++ AR I++A++V + ++ A E++ + K +++LDE H++ D AR++ Sbjct: 346 KACPYYTARELIEDADIVFCPYNYLLDAQIRESMDINLKEQIVILDEAHNIVDCARESAS 405 Query: 263 MS-AEITAPWYRLQLD 277 S E+ + R +LD Sbjct: 406 YSITEVRLRFARDELD 421 >UniRef50_Q12VQ5 DEAD/DEAH box helicase domain protein n=2 Tax=Euryarchaeota RepID=Q12VQ5_METBU Length = 726 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 55/250 (22%), Positives = 101/250 (40%), Gaps = 46/250 (18%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA 111 E G GKTLS L+P + + + KT++++T NV Q + + +KK + D+K Sbjct: 39 FEGACGTGKTLSALVPALHVGKMLGKTVIIAT-NVHQQMVQFINEARDIKK-VQDVKVAV 96 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYK---- 167 G+ +CP+ + + EL +E + +L D+YK Sbjct: 97 IKGKTA-MCPQEADYEECSVKRENTF------ELMETEREIYLKRQELNSARDSYKKSHD 149 Query: 168 --WDGLRDHTDIAID--------------DDLWRRLSTDKASC-------------LNRN 198 + LRD ID +DL+ L +D +N + Sbjct: 150 PAFVTLRDELSKEIDAVEEKARGLRDRACNDLYEVLRSDSEKFREWLYKEVRSPEEINDH 209 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL----PDPKNLLLVLDEGHHLP 254 C + + +RE++ A++++ N+ V+ VL +P+ +++ DE H+L Sbjct: 210 AIKDGMCGYELVKRELKHADLLICNYHHVLNPDIFSTVLGWIEKEPQETIVIFDEAHNLE 269 Query: 255 DVARDALEMS 264 AR +S Sbjct: 270 SAARSHSSLS 279 >UniRef50_D0NXC2 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NXC2_PHYIN Length = 988 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 +REC +F AR + A +V A + ++ AV K+ ++VLDE H++ D R + Sbjct: 339 HRECAYFHAREALDHANIVFAPYNYLLDPTIRGAVGITLKDAIIVLDEAHNVEDTCRSS- 397 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 S E+T + FT ++ RPKT A+ + LN L + ++ N I Sbjct: 398 -ASVEVTTDALAASIKAFTIVIK---HGNRPKTYN--ALLKLLNGINRWLQSVDSNANAI 451 Query: 322 LNLYMPAGQEAEHRFAMG 339 L P+G E + + G Sbjct: 452 L---QPSGYEEKSKVWDG 466 >UniRef50_B3GAM9 AMDV4_8 n=1 Tax=uncultured virus RepID=B3GAM9_9VIRU Length = 479 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 28/230 (12%) Query: 448 LWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIV------ 501 LW +I+++SAT + S+ L ++ EK + + + SPFN E G I+ Sbjct: 230 LWNMFDYILLSSATFFDVPSY--LSDLGLSNEKW--KLIDVPSPFN-PENGPIIKASDLH 284 Query: 502 IPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLML 561 + + + +ID Q I E+ + GM+ ++ RA + + T + + Sbjct: 285 LSKKNFDSTIDQVVQKIDEILD------QHPHERGMIHCYS--RAYKNAIWERTQRKNRM 336 Query: 562 LVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSP 621 + R +++ V G+ SVL+ + + EG+ L DL I K F P+ P Sbjct: 337 VTHESNNRSEVLKNFTTDVPEGDNSVLLSM-NMGEGVSLDDDLARFQIIVKAPFLPLGDP 395 Query: 622 VVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 + E +S N Y Q++ + L+Q GR++RS +G I D Sbjct: 396 WIALHKE--RSANWY--RNQTIIT----LMQMAGRIVRSKDDFGFTYIID 437 >UniRef50_Q17978 Mutator protein 14 n=4 Tax=Caenorhabditis RepID=Q17978_CAEEL Length = 528 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 11/61 (18%) Query: 46 EGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK-----------TLVVSTANVALQDQIYS 94 EGR L +EAPTG+GKT ++LIP I A + ++ ++++ + AL DQ+++ Sbjct: 129 EGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSILIMASTSALVDQLFN 188 Query: 95 K 95 + Sbjct: 189 R 189 >UniRef50_D1YWT2 DNA repair helicase n=1 Tax=Methanocella paludicola SANAE RepID=D1YWT2_METPS Length = 726 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 47 GRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD 106 GR + E G GKTLS L P +AI RE+ K ++++T NV Q + + ++ +K I D Sbjct: 32 GRLVLFEGACGTGKTLSALAPSLAIGREKNKKVIIAT-NVHQQMEQFIQEAREIKA-IAD 89 Query: 107 LKFTAAFGRGRYVCP 121 +K G+ ++CP Sbjct: 90 IKVAVVKGK-THMCP 103 >UniRef50_B7S0W4 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0W4_9GAMM Length = 756 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 42/234 (17%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI-AIAREEQKTLVVSTANV 86 R+ QR + V K + ++G L +EAPTG+GKT + L P + A+A ++ + +V T+ Sbjct: 189 RSGQRDIAELVYKCV--DQGGELMVEAPTGIGKTAAVLYPALKAMASQKHEAIVFVTSRT 246 Query: 87 ALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 + + L L+ + RG +C +LTA S + F + Sbjct: 247 -VGRRTAEDCLSLMSE------------RGLQLCSLSLTAKES--------ICF-----S 280 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 P C KG +D L A+ D + RR + S R + CP Sbjct: 281 PGKACHGDDCPFAKG-----YYDRLPAAMTEAVQDGILRRQEIE--SIARR----HEVCP 329 Query: 207 FFVARREIQEAEVVVANHALVMA--AMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 + +A + +V++A+ V + A + D + +++DE H+LP+ AR Sbjct: 330 YQLAIDLMPWVDVLIADAHYVFSFYAGVGRMMEQDQRRWTVLVDEAHNLPERAR 383 >UniRef50_A0DE87 Chromosome undetermined scaffold_47, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0DE87_PARTE Length = 913 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 25/211 (11%) Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA 111 +E+PTG GKTLS L + + +K S A+ L+ S+ LK++ +LK Sbjct: 73 LESPTGTGKTLSLLCSTMGWLHKHRKEQQKSGASSNLKIIYASRTHAQLKQVAQELK--- 129 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKL--KGDLDTYKWD 169 R V N++ + S +D LD N Q C +L + Y D Sbjct: 130 -----RTVYAPNISMVGS-----RDQYCLLDFSNLKGNALIQA-CRRLVKRNKCQFYNKD 178 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 L + A + L L K N N CP++ R + A++++ + ++ Sbjct: 179 SLPNIA--AQNSKLINTLEESKQFGHNNNV-----CPYYFERERLTNADLILLPYNYLLD 231 Query: 230 AMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 S V + +N +++ DE H++P A + Sbjct: 232 REFSNIV--NTENSIIIFDEAHNVPSAAENG 260 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=E... 934 0.0 UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B... 611 e-173 UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6... 602 e-170 UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella m... 601 e-170 UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=5... 597 e-169 UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Lept... 595 e-168 UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteob... 595 e-168 UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB... 594 e-168 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 590 e-167 UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacteriu... 588 e-166 UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 588 e-166 UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q... 588 e-166 UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 T... 586 e-165 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 586 e-165 UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassifie... 585 e-165 UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans D... 583 e-165 UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1... 581 e-164 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 581 e-164 UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejue... 578 e-163 UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae Rep... 577 e-163 UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV 576 e-162 UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damag... 575 e-162 UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0... 572 e-161 UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3... 571 e-161 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 570 e-161 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 570 e-161 UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium Rep... 569 e-160 UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 ... 568 e-160 UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9X... 567 e-160 UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1... 567 e-160 UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesar... 566 e-159 UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylo... 565 e-159 UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivoran... 565 e-159 UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium Re... 565 e-159 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 565 e-159 UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 ... 565 e-159 UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteo... 564 e-159 UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V... 564 e-159 UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2... 560 e-158 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 560 e-158 UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168... 560 e-157 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 559 e-157 UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 143... 559 e-157 UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=... 558 e-157 UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus... 557 e-157 UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococc... 555 e-156 UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC50... 553 e-156 UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG 553 e-156 UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1... 552 e-155 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 552 e-155 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 552 e-155 UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZ... 549 e-154 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 549 e-154 UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax... 548 e-154 UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_A... 548 e-154 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 548 e-154 UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivo... 548 e-154 UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammapro... 548 e-154 UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphi... 547 e-154 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 547 e-154 UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BA... 546 e-154 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 546 e-153 UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae... 545 e-153 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 545 e-153 UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4... 544 e-153 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 544 e-153 UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax... 544 e-153 UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans... 543 e-152 UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylo... 542 e-152 UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID... 541 e-152 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 537 e-151 UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID... 536 e-151 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 536 e-150 UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-ter... 534 e-150 UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Trep... 534 e-150 UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4... 534 e-150 UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 ... 532 e-149 UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteoba... 532 e-149 UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomic... 530 e-149 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 530 e-149 UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemm... 530 e-149 UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium h... 530 e-148 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 529 e-148 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 529 e-148 UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus ... 529 e-148 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 528 e-148 UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR... 528 e-148 UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 ... 527 e-148 UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteo... 527 e-148 UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH 527 e-148 UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 1606... 526 e-147 UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC... 524 e-147 UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B... 524 e-147 UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix ... 523 e-147 UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=... 522 e-146 UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 143... 522 e-146 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 521 e-146 UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad... 521 e-146 UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanu... 520 e-146 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 520 e-146 UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2... 519 e-145 UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxida... 518 e-145 UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A... 515 e-144 UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis... 515 e-144 UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterinea... 514 e-144 UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW 513 e-144 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 513 e-143 UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 Rep... 510 e-142 UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter no... 508 e-142 UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA 508 e-142 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 506 e-141 UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepI... 504 e-141 UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV... 498 e-139 UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP... 496 e-138 UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus Re... 494 e-138 UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3... 491 e-137 UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C09... 489 e-136 UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 425... 487 e-136 UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curviba... 487 e-136 UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus R... 486 e-135 UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP 486 e-135 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 485 e-135 UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_... 485 e-135 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 484 e-135 UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=1... 484 e-135 UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus fer... 483 e-134 UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepI... 482 e-134 UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23... 481 e-134 UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incer... 480 e-133 UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces c... 479 e-133 UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibact... 479 e-133 UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 Re... 478 e-133 UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_... 477 e-133 UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borr... 475 e-132 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 473 e-131 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 473 e-131 UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1W... 470 e-131 UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinom... 469 e-130 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 467 e-130 UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL... 464 e-129 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 463 e-129 UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1... 462 e-128 UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_... 462 e-128 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 461 e-128 UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio pep... 461 e-128 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 458 e-127 UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrop... 455 e-126 UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquete... 452 e-125 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 451 e-125 UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n... 451 e-125 UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_... 449 e-124 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 443 e-122 UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyra... 441 e-122 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 438 e-121 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 433 e-120 UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium... 433 e-119 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 430 e-119 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 426 e-117 UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus ... 425 e-117 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 423 e-116 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 423 e-116 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 422 e-116 UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=C... 421 e-116 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 419 e-115 UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured T... 416 e-114 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 414 e-114 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 406 e-111 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 402 e-110 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 399 e-109 UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Synt... 394 e-108 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 384 e-105 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 377 e-102 UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Rosebur... 373 e-101 UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteri... 368 e-100 UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi... 367 e-99 UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefac... 366 1e-99 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 365 3e-99 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 365 4e-99 UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostri... 364 8e-99 UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiph... 363 2e-98 UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=... 357 6e-97 UniRef50_UPI0001BC908D ATP-dependent DNA helicase DinG n=1 Tax=P... 354 9e-96 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 350 1e-94 UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=B... 343 2e-92 UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_A... 341 6e-92 UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostri... 339 2e-91 UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 T... 337 9e-91 UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 ... 334 9e-90 UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2... 332 3e-89 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 332 4e-89 UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Dein... 329 3e-88 UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2N... 328 4e-88 UniRef50_Q840H8 Putative uncharacterized protein (Fragment) n=2 ... 328 6e-88 UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium t... 327 7e-88 UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum ce... 324 6e-87 UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C... 323 1e-86 UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2... 322 3e-86 UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus ... 312 3e-83 UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7... 310 9e-83 UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK2... 308 3e-82 UniRef50_B4U7P2 Helicase c2 n=1 Tax=Hydrogenobaculum sp. Y04AAS1... 305 3e-81 UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=... 304 7e-81 UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhod... 296 2e-78 UniRef50_A6UVN5 Helicase domain protein n=1 Tax=Methanococcus ae... 291 6e-77 UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium pe... 289 2e-76 UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environ... 289 3e-76 UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicu... 288 4e-76 UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6... 288 5e-76 UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillu... 288 7e-76 UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. ... 281 8e-74 UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococc... 280 1e-73 UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1... 270 1e-70 UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=... 263 2e-68 UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1... 258 4e-67 UniRef50_C8X8L4 Helicase c2 n=1 Tax=Nakamurella multipartita DSM... 255 6e-66 UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=... 253 3e-65 UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=... 251 6e-65 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 251 8e-65 UniRef50_B5IHH7 DEAD_2 domain protein n=2 Tax=Aciduliprofundum b... 249 3e-64 UniRef50_UPI000186CB9B regulator of telomere elongation helicase... 248 5e-64 UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C... 238 4e-61 UniRef50_A0CAB5 Chromosome undetermined scaffold_161, whole geno... 234 6e-60 UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lact... 230 2e-58 UniRef50_C4M6T8 DNA repair helicase, putative n=2 Tax=Entamoeba ... 219 4e-55 UniRef50_UPI0001850E3B bifunctional ATP-dependent DNA helicase/D... 214 8e-54 UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei Re... 213 2e-53 Sequences not found previously or not previously below threshold: UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 321 5e-86 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 268 4e-70 UniRef50_Q5UF23 Predicted Rad3-related DNA helicases n=1 Tax=unc... 240 1e-61 UniRef50_Q6MR44 Similar to ATP dependent helicase n=1 Tax=Bdello... 237 1e-60 UniRef50_A0AE01 Putative DEAD/DEAH box helicase n=1 Tax=Streptom... 236 3e-60 UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9X... 236 3e-60 UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales... 229 3e-58 UniRef50_B8FYP7 DEAD_2 domain protein n=2 Tax=Desulfitobacterium... 226 4e-57 UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine ... 225 4e-57 UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium praus... 222 4e-56 UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit ... 221 1e-55 UniRef50_D1PKE7 Putative helicase c2 n=1 Tax=Subdoligranulum var... 221 1e-55 UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B22... 220 2e-55 UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacter... 219 2e-55 UniRef50_A0C5Z5 Chromosome undetermined scaffold_151, whole geno... 219 3e-55 UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID... 217 1e-54 UniRef50_D1YWT2 DNA repair helicase n=1 Tax=Methanocella paludic... 217 1e-54 UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=... 216 3e-54 UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostri... 216 3e-54 UniRef50_C6LHG2 Putative helicase n=1 Tax=Bryantella formatexige... 215 4e-54 UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variab... 214 9e-54 UniRef50_C7P046 DEAD_2 domain protein n=2 Tax=Halobacteriaceae R... 214 1e-53 UniRef50_C0ESD4 Putative uncharacterized protein n=1 Tax=Eubacte... 213 2e-53 UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacte... 212 3e-53 >UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=Enterobacteriaceae RepID=DING_ECOLI Length = 716 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 716/716 (100%), Positives = 716/716 (100%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK Sbjct: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC Sbjct: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID Sbjct: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP Sbjct: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI Sbjct: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR Sbjct: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA Sbjct: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK Sbjct: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL Sbjct: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 Query: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL Sbjct: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS Sbjct: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR Sbjct: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 >UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B8CRB2_SHEPW Length = 701 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 234/701 (33%), Positives = 359/701 (51%), Gaps = 28/701 (3%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L+A +K QI YK + +P+F R Q ++A+++KTLAGE + R + +EA TG+G Sbjct: 13 LSADVKTQIRTIYKGIASSLPNFRSRREQNYIVAEISKTLAGEYDKQRRIIVVEAGTGIG 72 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPL-LKKIIPDLKFTAAFGRGRY 118 K+L+Y++ I +A +K + ++TA VALQ+Q+ KDLP L+ D F GR RY Sbjct: 73 KSLAYILGTIPLALASKKKVCIATATVALQEQLLHKDLPFFLQHSGLDFTFGLVKGRQRY 132 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC L L + + Q + + +Q + L D +W+G RD Sbjct: 133 VCLSKLEMLVGPDNSSQ-----MAMWQSKPDQSQVDMLEGLLKDFKESRWNGERDTLTKP 187 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--SEAV 236 + D LW++++ DK SC ++ +R CPF AR +I +V++ANH+L+ A +E + Sbjct: 188 LPDHLWQQIACDKHSC-HKQLASHRNCPFHKAREDIDTWDVLIANHSLLFADLELGGGVI 246 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 LPDP++L V+DE HHLP VARD A I L+ TK + Q + I Sbjct: 247 LPDPEDLYYVIDEAHHLPIVARDFSSAQATIRGA--SDWLEKLTKTTSKLQNQIKSNYI- 303 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRF--AMGELPDEVLEICQRLAK 354 +A + + H ++ L+ + + + E+RF G+LP +L + + LA Sbjct: 304 -IAPAQAMLDHIGDISGLLNQVAHFCDAQAKQFDNPENRFRFEHGKLPPALLILAENLAT 362 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRL--HRLILQMNRALGMFEAQSKLWRL-ASLAQS 411 + + L L+E DI + L+ + L E KLWR+ A Sbjct: 363 ASNVALKQFNKMLALLNEAIKDGDIPKHLSEALLSETGFMLQRIENLQKLWRMMAKQDNP 422 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 GAP+ +W + Q F I V LE LLW +++ SATLR+LN+F+ Sbjct: 423 KGAPMARWIE-QLTGKQSDYLFSASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHF 481 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 GL G R++ALDSPF+ + + +P+M EP+ DN + E+A VE Sbjct: 482 THQVGLSINDGSRYLALDSPFDFEQNATLFLPQMDTEPTHDN---YTDELAKQIIALVED 538 Query: 532 KKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 + + LVLFAS M++ D V ++ LL+QG PR +++ H+ + + S++ G Sbjct: 539 E--MASLVLFASYWQMEKVADLVENKIKTNLLIQGTLPRQEILKRHKALCDDTKPSIIFG 596 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 SF+EGLDL GD L+ + I K+ F SPV E++K PF ++P AS L Sbjct: 597 TGSFSEGLDLPGDYLTNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPDASRKL 656 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 +Q GRL+R +G + I D+RL+TK YGK LLDALP F Sbjct: 657 VQSCGRLLRKEQDYGRISILDRRLVTKRYGKSLLDALPPFR 697 >UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6VX61_MARMS Length = 707 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 247/714 (34%), Positives = 359/714 (50%), Gaps = 31/714 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 L+ LK QI Y+A + PRA QRQMI +A+TL EE I Sbjct: 2 LSDELKKQIQLAYRASLDAKSH-KPRAGQRQMIGAIARTLGNIKQGSEGERLEEKHVAVI 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKTLSY + I IA+ L++STA VALQ+QI K+LP LL+ K+T Sbjct: 61 EAGTGTGKTLSYCLAAIPIAKARGLKLIISTATVALQEQILHKELPDLLEHTELTFKYTL 120 Query: 112 AFGRGRYVCPRNLTA-LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 A GRGRY+C NL L+S E D+ A L ++ ++ ++ L WDG Sbjct: 121 AKGRGRYLCLNNLEGFLSSEEQAMDDMFAGLFEQHLHSDDINTVLYQEMDTALQKGDWDG 180 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 +D+ + D WRRL+TD C NRNC Y CPFF AR EI+ A+V+VANH LV+A Sbjct: 181 DKDNWAGIVRDQDWRRLTTDHQQCTNRNCANYSACPFFKARAEIEVADVIVANHDLVLAD 240 Query: 231 M--ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATC 286 + A+L PK + + DEGHHLPD A + W R L Sbjct: 241 LSLGGGAILTPPKETIYIFDEGHHLPDKAIGHFRHEVRLQQSITWLRQLEKNLVNLKQEL 300 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL 346 + L IP+++ + + L + + +HRF G++PDE+ Sbjct: 301 TDDVSVTGQLLLKIPQQIQSIVNFIQYAQQGLAPYIQGLGLDQENNQHRFEFGQIPDELR 360 Query: 347 EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQ-----MNRALGMFEAQSK 401 ++ L + L E + D +KT ++ + + + + LG E Sbjct: 361 QLAYSLQTSYQKLFNNIES-IQDECKKTKQNEGMGVTPETAETWQPILGVILGRLEQCIG 419 Query: 402 LWRLASLAQSSG-APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 LW L S P +W + + + I ++ L + LW +VTSA Sbjct: 420 LWCLYSTVDDQNFPPNARWLVLSGQGMEQDIELGGSPILAANTLRQQLWDKCFGAVVTSA 479 Query: 461 TLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAE 520 TL +LN F R SG+ ++ ++ + SPFN E G +V+P M EP+ EQH AE Sbjct: 480 TLTALNQFHRFNMRSGVPRES--EYLRVISPFNFQENGLLVVPDMEHEPNRV--EQHTAE 535 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKR 579 + + K V ++K G LVLF+S R M+ V+ L+ +LL+QG+Q + +++ H+ R Sbjct: 536 IVTYLDKHVNTEK--GSLVLFSSRRQMEEVAQSVSVGLQEILLMQGEQSKRVILDSHKSR 593 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 + G+ S+L+GL SFAEG+DL GD L+ V+I KI F D PV T EW++ PF Sbjct: 594 IDEGKGSLLLGLASFAEGVDLPGDYLTCVYIAKIPFAVPDDPVEATLAEWIQKRGGNPFM 653 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 ++P AS L+Q GRL+RS GE+ I DKRL TK YG +L+++LP + + Sbjct: 654 EITIPDASLRLVQATGRLLRSEKDSGEIHILDKRLRTKRYGSQLINSLPPYKYQ 707 >UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella marisrubri RepID=Q1MXU1_9GAMM Length = 707 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 223/715 (31%), Positives = 342/715 (47%), Gaps = 41/715 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 L++ K I Y E PR Q+QMIA +AKTL G + + + Sbjct: 2 LSSHAKETIQRAYSQFLEA-RSLKPRYGQKQMIAAIAKTLGGIQSDDEGKRVNDKQVCVV 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTA 111 EA TG GKTL+YL+ I +A + K ++VSTA VALQ+Q+ SKDLP + K + ++ Sbjct: 61 EAGTGTGKTLAYLLSTIPLAEDLNKKIIVSTATVALQEQLISKDLPDVAKYSGLEFRYAL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L + Q + ++Q + K + T +WDG Sbjct: 121 AKGRGRYLCVHKLDQELKDQRMQDASMDMFGGADATDDQ--KGLFQKFLDEFLTGRWDGD 178 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA- 230 RD+ I+ + W ++ C NR C ++ CPFF AR+ +++AEV+VANH LVMA Sbjct: 179 RDNWPETIEYEDWSMVTATHRECSNRRCPHFNACPFFTARKSLEDAEVIVANHDLVMADI 238 Query: 231 -MESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 + A+LP+P + V DEGHHLPD A ++ + K ++ ++ Sbjct: 239 SLGGGAILPEPAQSIYVFDEGHHLPDKAISHFAGQVKLNQE------ENLLKQISKAVDT 292 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLN-------NILNLYMPAGQEAEHRFAMGELP 342 + P+ + + + E++ E+ + L + L + HRF MG +P Sbjct: 293 LGKQCGTPMGLLQIVTQFPEKIGEIHSQLGFARHIILDYLGDQAEVEGISTHRFRMGVVP 352 Query: 343 DEVLEICQRLAK----LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA 398 D ++E+ L K L + + + E L++ G + R M L E Sbjct: 353 DALIELAGELNKTHNSLYQYIDKIVEALKASLNKDDGEYRQADAERWFPIMGMLLARLEM 412 Query: 399 QSKLW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 LW A P +W R E + + + I ++ L + LW +V Sbjct: 413 AGLLWLSFAQQDHEDNVPTARWLQRLITEYEDDIALYSSPILAAELLAKNLWSRCYGAVV 472 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 TSATL +L F RL+ +G+ + F + SPF++ G+I++P VEP + + Sbjct: 473 TSATLTALGRFDRLRMKAGIAKDN--YFERIQSPFDYPNLGEILVPNDAVEPGHGD--DY 528 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELH 576 +++ ++ + LVLF S R M + D+ ++ Q + + +++ H Sbjct: 529 TQQVSDLLESHLDENE--STLVLFTSRRLMNDVKFQLPFDVSDHVITQDEFSKQEVLKQH 586 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 R ++ G S L GL SFAEG+DL GDLL V I ++ F D PV T EWL+S R Sbjct: 587 RDKIEAGLPSYLFGLASFAEGIDLPGDLLQHVIIVRLPFSVPDDPVDATLAEWLESKGRN 646 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 PF S+P AS LIQ VGRLIR+ G + + DKRL++K YG LLD LP F Sbjct: 647 PFMEISVPDASVRLIQAVGRLIRTEQDTGRITVLDKRLVSKRYGSLLLDGLPPFR 701 >UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=50 Tax=Gammaproteobacteria RepID=DING_PHOPR Length = 692 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 229/703 (32%), Positives = 361/703 (51%), Gaps = 34/703 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L + +K+ I Y+ L Q+ +FIPR Q ++A++AKTLAGE + R L EA TG+G Sbjct: 2 LHSQIKSDIKQCYENLGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHRMLVGEAGTGIG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRY 118 K+L+YL+ GI A K L++STA VALQ+Q+ +KDLPL +I P + F A GR RY Sbjct: 62 KSLAYLLGGIPFALFNNKKLLISTATVALQEQLINKDLPLFNRIYPKEFSFILAKGRQRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 C L A +T QQ + +++ ++ + +R K D KWDG RD Sbjct: 122 CCNHKLEACCATNNDQQ--VTLWEEKPKKSDLDLLRRMLKATRD---GKWDGDRDSWPTT 176 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA--MESEAV 236 I D +W ++ DK SC + +R CPF AR + +A+V++ANHAL+MA + + Sbjct: 177 IPDRVWPQIMADKHSC-HAGLPQHRSCPFAKAREHLDKADVIIANHALLMADIELGGGVI 235 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCMEQFRPKT 294 LP+P+ + V+DE HHLP VARD ++ + W KL + +++ Sbjct: 236 LPEPEQTIYVIDEAHHLPKVARDFSSAASSLKGAATWLEKLNQTIGKLAE--LAEYKKAA 293 Query: 295 IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK 354 AI E + L ++ +++ + ++ +RF GELP + + + Sbjct: 294 RFQDAILENIQHLIPTLRQVANNVDVGM-----FSKDGIYRFEHGELPAWLEQEAKGCKD 348 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRL--HRLILQMNRALGMFEAQSKLWRLASLAQSS 412 ++ + +SE+ ++I + + + + L E K+W L + + Sbjct: 349 ASKKALQSLGKIHDLISERLKDNEIQQRLGEQALAESGVYLQRLENLEKVWALMAQPKKD 408 Query: 413 -GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 GAP+ +W + + + + V +L++LLW I+ SATLR+LN F+ Sbjct: 409 KGAPLARWIEKNP-DNEGDYIIQVSPLEVGYRLDQLLWSRAAGAILVSATLRALNQFTYF 467 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 G+ E RF+AL SPF++ ++VIP + +EP D + + + +E Sbjct: 468 CRQVGIYEMDSTRFLALASPFDYQNNARLVIPALSLEPQAD---KFTDLLIKTLPEYLEG 524 Query: 532 KKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 + LVLF+S M + D + + LLVQG++ R+ ++ H+ +G+ S+ Sbjct: 525 ET--ASLVLFSSYWQMNKVADELRPLAKKNKWELLVQGEESRHITLKKHKDNCKSGKPSI 582 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L G SF+EGLDL GDLL + I KI F SPV E+++S PF S+P AS Sbjct: 583 LFGTGSFSEGLDLPGDLLKNLIITKIPFGVPTSPVEEAHAEYIESCGGNPFMQISVPEAS 642 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 LIQ VGRLIR G VV+ D+R++ + YGK LLD+LP F Sbjct: 643 KKLIQSVGRLIRKEDDMGRVVLLDRRIINRRYGKALLDSLPPF 685 >UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EQ06_9BACT Length = 738 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 249/727 (34%), Positives = 359/727 (49%), Gaps = 44/727 (6%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA--------GEEGRHL-AI 52 L K +I L +P F R QR MIA+VA+T + ++G++L I Sbjct: 17 TLFEEEKQEIRVLLDRLSRTLPGFAARPGQRAMIAEVARTFSRCREEGEPSKDGQNLSVI 76 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLK-FTA 111 + PTG GKT++YL+ GI +AR +KTL+VSTA V+LQ+Q+ +KD+P L +++ + + Sbjct: 77 QGPTGTGKTMAYLLAGIVLARSRKKTLLVSTATVSLQEQLVTKDIPQLARVLDNPPVYEL 136 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C RNL +L DL A P + E +L+GD WDG Sbjct: 137 AKGRGRYLCERNLLSLT-------DLQAGNAFWKHPPSASELDLLDRLRGDFPD-SWDGD 188 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RDH +++ D LW + SC + C Y CPFF+ + A++VVANH LV++ + Sbjct: 189 RDHLPVSVPDSLWSLIQNQGTSCTGKRCPLYSRCPFFLKKEAFSRADIVVANHDLVLSDL 248 Query: 232 --ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVATCM 287 +LP P+ LLV DE HHLP + S ++ APW L ++ A Sbjct: 249 VLGGGILLPSPEKSLLVFDEAHHLPGKSLSHFRESLDLEGLAPWIERIPGLLERISAFFD 308 Query: 288 EQFRPKTIPP--LAIPERLNAHCEELYELIA-----------SLNNILNLYMPAGQEAEH 334 + R KT+ A+ L L E + ++ + +++ Sbjct: 309 VRERDKTVQAQAEALTNSLMTLGTWLEEHWEGKPAGSFSSETEQDGANGIFRGSREQSLW 368 Query: 335 RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG 394 RF G+ PD +++ + A +L +L + L+E T D+ R Sbjct: 369 RFPGGKFPDAMIDPSRIGASAARVLAERLQLERDKLAEATTGSDVRRNRERDAFFLDVGV 428 Query: 395 MFEAQSKLWRLASLAQ----SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR 450 E RL SL + AP +WAT + G + + LE +LWR Sbjct: 429 HLEKTLDAVRLLSLYEKVDPEGKAPFARWATMWKESGTFSHRLEASPVWPATLLEEVLWR 488 Query: 451 SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPS 510 + +TSATL SL SF GL G F++LDSPF QG + +P MR +P+ Sbjct: 489 RVSACCLTSATLMSLGSFKSFSSRCGLSMLTGVSFLSLDSPFPLDRQGVLSLPVMRSDPT 548 Query: 511 IDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPR 569 + E H E+ + G LVLF+S R M+ ++ + + +LVQG++ R Sbjct: 549 --DFESHTREIVESLPAVL--SPTGGALVLFSSRRQMEAVRKGLSPEWQNRVLVQGERSR 604 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 ++ LH +RV GE SVL GL SF+EGLDLKGDL + V I KI FP PV T EW Sbjct: 605 KDILALHEQRVRAGEASVLFGLSSFSEGLDLKGDLCTHVVIAKIPFPVPTEPVEETLSEW 664 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 ++S PF +LP A L+Q GRLIRS G V I+DKRLL KNYG LL +LP Sbjct: 665 IRSRGGDPFREIALPEAGLRLVQAAGRLIRSETDRGIVTIFDKRLLEKNYGVHLLRSLPP 724 Query: 690 FPIEQPE 696 F +E+P+ Sbjct: 725 FRLERPD 731 >UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteobacteria RepID=Q482M5_COLP3 Length = 712 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 225/713 (31%), Positives = 350/713 (49%), Gaps = 33/713 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L+ LK I YKA+ E + F PR Q +IA++AKTLAGE + + + IEA TG G Sbjct: 2 LSDKLKQAIRQAYKAIGENLTHFNPRKQQTLLIAEIAKTLAGEYSKDRKIITIEAGTGTG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRY 118 K+L+Y + I +A K + +STA VALQ+Q+ KDLP LKK + FT A GR RY Sbjct: 62 KSLAYSLGAIPLALARDKKVCISTATVALQEQLVDKDLPFLKKYAGLNFDFTLAKGRQRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC + LT +T + A P+ ++ + K LD W G D + Sbjct: 122 VCRQKLTLAVTTGSGNEPAQAGFTFAEKPDAKDIRTLNKMHKALLD-GSWLGDIDSWETH 180 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--SEAV 236 + +W ++ +DK SCL +N + CPF AR + +A V+V NH+L++A +E + Sbjct: 181 LPQHIWHQVQSDKHSCL-KNLSEHTHCPFHKARETMDQAHVLVVNHSLLLADLELGGGKI 239 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 L P++ ++DE HHLP V RD S + L T + + + P Sbjct: 240 LSPPEDTFYIIDEAHHLPKVTRDFSSASITLKGSIEWLTKLRDTGDKMAKLIKSKNAISP 299 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQ---------------EAEHRFAMGEL 341 L + + E+ +++ + N+Y + E +RF G + Sbjct: 300 ALKLGDDCQDLLVEMQKVLNFIEANANVYFLENESSAQNNNFTKNSKNDEQVYRFENGII 359 Query: 342 PDEVLEICQRLAKLTEMLRGLAELFLNDLSE--KTGSHDIVRLHRLILQMNRALGMFEAQ 399 P + + L L++ N L E K G + L+ + L E Sbjct: 360 PQTLKNWAEDLQSLSKKSLSHLNKLYNGLIEAVKDGDTQMYVAEPLLAEAGFMLQRLENL 419 Query: 400 SKLWRLASLAQSS-GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 LW + + + S GAP+ +W + + Q +L I V LE +LW ++ Sbjct: 420 QSLWFMYAKSDSDKGAPMARWLEKITLKRQDYL-LSASPIEVGFTLENMLWSQCEGAVLC 478 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SATLR+LNSF + GLK G ++ +DSPF++ ++VI +M E S + Sbjct: 479 SATLRALNSFDHFRFQVGLKNNDGSQYQQVDSPFDYQNNSQLVIAKMDNEASAP---EFT 535 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHR 577 E+ A K + K+ LVLF+S M + + D +L ++VQG+ R +++ LH+ Sbjct: 536 DEVIAKLPKYL--KQGNASLVLFSSYWQMNKVALALREDHKLEIMVQGELSRQQIIALHK 593 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 KR + + S++ G QSF+EGLDL GD L+ + I K+ F SPV + E++ + P Sbjct: 594 KRCDDNKESIIFGTQSFSEGLDLPGDYLNNLIITKLPFSVPTSPVEQAQAEYVTAKGGNP 653 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 F S+P S L+Q GRL+R+ G + + DKR++TK YGK+LLD+LP F Sbjct: 654 FMTLSVPDTSKKLVQACGRLLRNEMDEGVITLLDKRVVTKRYGKQLLDSLPPF 706 >UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB0_SEBTE Length = 832 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 205/748 (27%), Positives = 342/748 (45%), Gaps = 75/748 (10%) Query: 1 MALTAALKAQIAAWYKALQ---EQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTG 57 ++L +K I ++ L ++ PDF R Q +M D+ K+L E + IEA TG Sbjct: 109 VSLKKHIKIDIDKYFGDLGIIRKKYPDFEIRDEQYKMSKDIEKSL--NENKKALIEAGTG 166 Query: 58 VGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRG 116 GKTL+YLIP + A E ++ST + LQ+Q+ +KD+PL+K++I D K+T GRG Sbjct: 167 TGKTLAYLIPTLEYALENNLKAIISTNTINLQEQLINKDIPLVKELIGQDFKYTLVKGRG 226 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 Y+C R L E ++ E+++ L+ +T K+ G R+ Sbjct: 227 NYLCKRKLQNAIMEE---------------SDDSEDKEILLNLQKWNETTKY-GDRNELR 270 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 I ++W +++ + C N C Y+ C FF AR+EI +++++V NH + A + + Sbjct: 271 YGISFEIWEKVNCELDLCTNVKCPYFSSCYFFNARKEIGKSDLLVLNHHMFFADLSIRSE 330 Query: 237 L-------PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 + P +L+ DE H++ D AR + +L +++ K V Sbjct: 331 IGFNTDYSILPNYDILIFDEAHNIEDTARSYFTSEVS-KYSFGKLMGNIYNKRV----RN 385 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLNN-----ILNLYMPAGQEAEHRFAMGELPD- 343 + I A+ + EE YE+I + LN Y E RF +G D Sbjct: 386 YNKSGIFVRALIYLKDNLSEEEYEIIDKVKEEEIIENLNKYYDKIIEIFDRFLLGFSKDS 445 Query: 344 --------------EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHR---LI 386 + + + + KL + L + + L++ T D RL +I Sbjct: 446 EQMEIKKRFDKDYIKSSSLWKEIMKLRKESVHLYSIMIKGLTKLTNEIDKFRLEDENGII 505 Query: 387 LQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLER 446 + + + K L + S W R+G + + V+D LE Sbjct: 506 FDFKKYIERVKVFMK--DLLYILDSDQEDHVYWTNINLRKG--SIRIYATPFEVADDLEH 561 Query: 447 LLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMR 506 L+ + I+ TSATL F ++ GL EK G +DSPF++ +Q K+ IP Sbjct: 562 NLFNKMDRILFTSATLAVEQKFDYYKKNIGL-EKKGIIEEIIDSPFDYEKQMKVYIPDDT 620 Query: 507 VEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLL 562 +P N + +++ F +K V + K +LF S ++ + + + LL Sbjct: 621 KDP---NSLEFFSDVYDFIKKLVINTKGR-CFLLFTSYSSLNFIYNKIRGELEKMGYTLL 676 Query: 563 VQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 QG+ PR+ ++EL + R ++++L G SF EG+D++GD L V I K+ F + PV Sbjct: 677 KQGELPRHEMIELFKIR----DKAILFGTDSFWEGIDVQGDSLKSVVIVKLPFKSPEDPV 732 Query: 623 VITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR 682 E+++ N+ PF +P A Q VGRLIRS G V I D R++ K YG++ Sbjct: 733 TEAIIEYMRKNNQNPFMNYQIPQAVIKFKQGVGRLIRSKTDTGIVTILDNRVIKKAYGEK 792 Query: 683 LLDALPVFPIEQPEVPEGIVKKKEKTKS 710 L +LP I + E I+K++++ KS Sbjct: 793 FLKSLPKTSIIRGN-REYILKEEKRVKS 819 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 590 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 181/718 (25%), Positives = 307/718 (42%), Gaps = 43/718 (5%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + L+E +P + R Q M +V + L ++ +HL IEA TG GK+L YL+P I + ++ Sbjct: 252 ERLKETLPHYESRDAQDMMFQEVMQAL--DDNKHLLIEAGTGTGKSLGYLLPSIYQSVKQ 309 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ++ ++VST + LQ+Q+ +D+PLL +++P K GRG Y+C R + + Sbjct: 310 EQKVMVSTHTINLQEQLRDRDIPLLTQVVPFPFKAAIFKGRGHYLCLRKFEH----KINR 365 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 +D + +D +T Q GD + G D W +S+D SC Sbjct: 366 RDFHSPKEDVITA-AQMLVWLTQTENGDDEELNLGGR--------GGDFWETISSDSDSC 416 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 L R C ++R+C + A+ E A+VV+ NH+ + +++ L P LV+DE HHL Sbjct: 417 LGRACPWFRKCYYHRAKHEAGIADVVITNHSKLFTDVKANHQLL-PSYERLVIDEAHHLE 475 Query: 255 DVARDALEMSAE-------ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DVA L + + +T + + L K + ++ +RL Sbjct: 476 DVAGKHLGLQMKYFSVVHTLTRLYKDSRSGQLPALRQLLQASPHEKAVEWSSVIDRLYPD 535 Query: 308 CEELYELIASLNNILNLYMPAGQEAE--------HRFAMGELPDEVLEICQRLAKLTEML 359 + E L++ L +P +A R + + P + + + ++ L Sbjct: 536 LITVKENWDRLSDQLFGLLPERGDASPGDAGQFSLRLSPLKKPKDWDSMAELEHQIHLTL 595 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + ++E D L+ ++ + + L S + W Sbjct: 596 GDVVRKGDKLIAEMKEDLDDYSADSLLTDLSGLFK--DLAAHREDLRSFMALNDEGTVYW 653 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 L + V + VS L+ L + +I+TSATL SF + E GL+E Sbjct: 654 MEANGNFRSKSLQLYAVPVDVSSHLKELFFDKKQSVILTSATLSVDKSFQFMIENLGLQE 713 Query: 480 KAGD---RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 A V L SPFN+ EQ +V+PR + H Sbjct: 714 AAEAGNLNTVQLPSPFNYREQALLVVPRDFPSVKGSVGDALFVNTLVKSLADTAVATHGR 773 Query: 537 MLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 MLVLF S R +++ + + + + +L QG R +R + SVL+G Sbjct: 774 MLVLFTSYRMLRQVHEPLKEALASSDITVLGQGMDGTSRT--KLIRRFQDSSASVLLGTS 831 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF EG+D+ G+ L+ + I ++ F P + P+V + E L+ + PF S+P A Q Sbjct: 832 SFWEGVDIPGEALTCLAIVRLPFQPPNHPLVEAKSELLQQQKKNPFMKLSVPQAVIRFKQ 891 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 GRL+R+ G V++YD R++ YGK L +LP +E + + E + Sbjct: 892 GFGRLVRTAQDKGIVIVYDTRVIESYYGKYFLYSLPGPKMEHMPTEGIVPRISEWLQE 949 >UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacterium RepID=C3WBH3_FUSMR Length = 823 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 179/735 (24%), Positives = 304/735 (41%), Gaps = 60/735 (8%) Query: 5 AALKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 +K IA +++ L + F R Q M + K L E + +EA TG GKT Sbjct: 116 ENIKIDIAPYFEKTGLLSQAFKGFEYRDEQLHMATHIEKGLNSETP--VIVEAGTGTGKT 173 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVC 120 L+YLIP I A + +K +V+ST + LQ+Q+ +KD+P+ K++I D K+ GRG Y+C Sbjct: 174 LAYLIPSIEWAIKNKKRVVISTNTINLQEQLLNKDIPIAKRVIQGDFKYILVKGRGNYLC 233 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 R + + + L ++LT + + + K +T G + D Sbjct: 234 NRKYHNVVMGDKS-------LLEDLTTSQKNQFAEIIKWGNQTET----GDKAELTFEAD 282 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL--- 237 + +W ++ C C Y EC F +R E ++A++++ NH + + + + Sbjct: 283 NTIWELFQSETDMCSGNKCPYKNECFFLKSRDEKKKADILITNHHMYFSDLAIRKEIGFN 342 Query: 238 ----PDPKNLLLVLDEGHHLPDVARDALEMSAE-------ITAPWYRLQLDLFTKLVATC 286 P+ L+V DE H++ VARD A + + T + + Sbjct: 343 TEYSILPEYGLVVFDEAHNIEKVARDYFSYEASKYSFTKTMNQIFITEGKKKNTGALDSV 402 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL 346 ++ + + + I ER EE+ SL Y E + MG Sbjct: 403 LKHIKSEELDNHGILER---EIEEIKLKHKSLYIAGREYFNHIIEVFSKGEMGTFTFRAR 459 Query: 347 EICQRLAKLTEMLRGLAELFLNDLSEKT--------GSHDIVRLHRLILQMNRALGMFEA 398 + + L + FL++ + D I ++ + + Sbjct: 460 KEEIENSPFLNTLNDFKDKFLSEYNSYNRKVRELIKELKDEEDRAGYINDFSKYIDRIDG 519 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 +R S W R+ L +++ +L++ L+ ++ II T Sbjct: 520 FINNFRFIH--DFSDEEFIYWIEVNSRKSNSKLV--ATPLKIDGELQKNLYLNLNQIIFT 575 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SAT+ N F+ +E GL + D+ + SPF++ Q K+ IP PS N I Sbjct: 576 SATIAIGNDFTYFKESIGLDKNTLDKV--IHSPFDYDNQMKVYIPNDIPNPSDKN---FI 630 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQPRYRLVE 574 E++ + + Q+ + VLF S + + D + + L + G PR +LV Sbjct: 631 DEISEYLKTQLIVSRG-KAFVLFTSYQTLNYVYYMIRDELEANGIELFIHGMAPRSQLVN 689 Query: 575 LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN 634 ++ NG+ VL G SF EG+D+KG LS V + K+ F PV E + + Sbjct: 690 MYI----NGKNPVLFGTDSFWEGVDIKGHQLSNVILIKLPFKVPSDPVTEAIIEHITAQG 745 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 + F +P A Q +GRLIRS G + I D R++TK YGK +D++P I Sbjct: 746 KNSFTEYQIPEAVIKFKQGIGRLIRSKTDSGTITILDNRVITKKYGKYFMDSIPTKNINI 805 Query: 695 PEVPEGIVKKKEKTK 709 E + + K Sbjct: 806 LSKSEILKDISKSVK 820 >UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 Length = 744 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 234/717 (32%), Positives = 353/717 (49%), Gaps = 35/717 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVA----KTLAGEEGR---------H 49 LT K I Y+ + + +P F PRA QR+MIA VA +TL EEG Sbjct: 30 LTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGEPPKREGESI 89 Query: 50 LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL-KKIIPDLK 108 IE PTGVGK+L+YL+ G +A+ K L+VS+A VALQ+Q+ +DLP L +K +L Sbjct: 90 AVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELT 149 Query: 109 FTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQ---EEQKRCAKLKGDLDT 165 F A GRGRY+CP L L + QQ+LL F + +++ EE K + + Sbjct: 150 FALAKGRGRYLCPYKLYQLTQSN-AQQNLLGFEAPAVLWDSKPKPEELKLLRDIADEFSA 208 Query: 166 YKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHA 225 +++G RD IDD +W +++ D+ CL C ECPF++AR ++ +VVVANH Sbjct: 209 RRFNGDRDAWPEKIDDAIWLKVTNDRHGCLKAACPNRPECPFYLARDMLETVDVVVANHD 268 Query: 226 LVMAA--MESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEIT-APWYRLQLDLFTKL 282 L++A M +LP P+N +DE HHLP A A W +L T Sbjct: 269 LLLADISMGGGVILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQLTGK 328 Query: 283 VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQ---EAEHRFAMG 339 +A ++ + A L++ E + L + + L + E + G Sbjct: 329 IAALTDKAELANLADEAAASLLDSLHEWQFHLAEEPSLSMGLSENDRRTNSEPTWLWEDG 388 Query: 340 ELPDEVLEICQRLA----KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGM 395 ++P+ + A L + + GL + EK D + RL + + Sbjct: 389 KIPEGLETTVSNTAIAARSLLKHVVGLNDALSATRREK--EQDGALIDRLTGEFGLFIAR 446 Query: 396 FEAQSKLWRLASLAQ-SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPH 454 E S +W L S P+ KW R + + F+ I + L LWR Sbjct: 447 IEQISAVWDLLSTVSIEGEEPLAKWIARRA-DDKNDYIFNASPISSASHLANSLWRRAAG 505 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 ++TSATL+SL SF+ + +GL +AL SPF+ +QG++ IP + P + Sbjct: 506 AVLTSATLQSLGSFNLILRQTGLLWLPETTTLALKSPFDFEKQGELYIPSIYASP--KDP 563 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLV 573 E H A + + K + + +G LVLF+S + MQ ++ D +LLVQG+ P+ L+ Sbjct: 564 EAHTAAVIEWLPKLISPTEAIGTLVLFSSRKQMQDVALHLPGDYLPLLLVQGELPKAVLL 623 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 + H + + G+ S++ GL SFAEGLDL G QV I K+ F D+P+ T+ W++ Sbjct: 624 QKHHQAIEEGKASIIFGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQR 683 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 PF ++P A LIQ VGRLIR+ +G V I D R+ T+ YG++LL LP F Sbjct: 684 GGNPFIEITVPEAGIKLIQAVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPPF 740 >UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q21I38_SACD2 Length = 720 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 223/725 (30%), Positives = 341/725 (47%), Gaps = 42/725 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 L +K +I Y E + PR Q+ MIA++AKTL EG I Sbjct: 2 LNKDVKKEIQQAYSKFLEA-RELKPRYGQKLMIAEIAKTLGSIQLNADGERQTEGHLCVI 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKT+SYL+ + +A+ K +V++TA VALQ+Q+ KDLP L++ F Sbjct: 61 EAGTGTGKTVSYLLAALPVAKALGKKVVLATATVALQEQVVLKDLPDLIRYADLKFNFCL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L + ++ Q + +DE + ++ + K + L KWDG Sbjct: 121 AKGRGRYMCLSKLDKILTSSDDTQ-FIPLYEDEHSEISEFDTKLYTSMMEKLGEGKWDGD 179 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RD+ ID +W+R++TD C RNC + R+C FF AR + EA+ +VANH LV+A + Sbjct: 180 RDNWHDEIDQPVWQRVTTDHRQCTGRNCKFVRQCAFFNARELLDEADCIVANHDLVLADL 239 Query: 232 E--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVATCM 287 A+LP P+ + + DEGHHLPD A + T W ++ L+ Sbjct: 240 ALGGGAILPAPEETIYIFDEGHHLPDKALNHFASHTRYKSTIRWLGQSEGQWSNLIEPLT 299 Query: 288 EQ--FRPKTIPPLAIPER----LNAHCEELYELIASLNNILNLYMPAGQ-------EAEH 334 + F P A+ + + AH + E + +L + + Sbjct: 300 DASYFTQIAAPTEAVFKNVRSLMEAHLPHMQEWVYALEASNEKDNDRFRRDDRQESSRQL 359 Query: 335 RFAMGELPDEV----LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMN 390 RF G +P + E+ L+ L L + + + V + + + Sbjct: 360 RFEQGVVPAAMEYLARELVDAFLDLSMHLGKLHKELETLIEDDYPLVPRVDIETVHGAVG 419 Query: 391 RALGMFEAQSKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 L + LW+ A P+ +W T + I S LE+ LW Sbjct: 420 TWLARADGNLSLWKSYADTKVIENWPIARWITVTTFNDVMDYEIVSSPILASKALEKDLW 479 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 +VTSATL +LNSF R + SG + + + + SPF++ + + IP VE Sbjct: 480 SRCCGAVVTSATLTALNSFDRFKIRSGTYDDS--HYSVVPSPFDYPNRAVLRIPSFAVEA 537 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQP 568 + H M + + ++ K G LVLF+S + M D + D R+++L+QG Q Sbjct: 538 NF--AADHTDSMIEYLPEIIDKKA--GTLVLFSSRKQMLEVFDQLPADFRMLILMQGSQS 593 Query: 569 RYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGE 628 + LV H+KR+ G S++ GL SFAEG+DL G + V I KI F D P+ + E Sbjct: 594 KQVLVSDHKKRIDEGSGSIIFGLASFAEGVDLPGKYCTHVIIAKIPFAVPDDPLEASLAE 653 Query: 629 WLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 W++S F ++P A+ L+Q GRL+R+ G V I DKRL+TK YG+ LL++LP Sbjct: 654 WVESRGGNSFMQITVPDAAMRLVQACGRLLRTESDKGVVTIMDKRLITKRYGQALLNSLP 713 Query: 689 VFPIE 693 F E Sbjct: 714 PFKRE 718 >UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6D5_DESAS Length = 957 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 170/722 (23%), Positives = 309/722 (42%), Gaps = 42/722 (5%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 I L +Q P + R Q QM VA+TL + L EA TG GK+++YL+P + Sbjct: 254 DILGPEGELAKQHPHYEHRPQQLQMSVAVAQTL--NKQSLLLTEAGTGTGKSMAYLVPAV 311 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALA 128 + + ++ +VVST + LQ+Q++ KD+P+L+++ + GR Y+C + + Sbjct: 312 LWSAQNRERVVVSTHTINLQEQLWFKDIPMLQQMFGKSFRAALVKGRQNYLCLSRWSEVF 371 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 S+ A + + Q GD +G + D W ++S Sbjct: 372 SSTDNHSRWEALFYSRILVWLTKTQ------TGDRSEINLNG--------AEYDYWSKIS 417 Query: 189 TDKASCLNRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 D C C+++++ C A++ + +++++ NH+L+ + ++ E + P LV+ Sbjct: 418 ADSDRCKGNQCHWFQKACFVSRAKKTAENSDLIIINHSLLCSDLQVENRIL-PSYGPLVI 476 Query: 248 DEGHHLPDVARDALE--MSAEITAPWY----RLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 DE HHL +VA + +S W +L + L A F K Sbjct: 477 DEAHHLENVATEHFGYMISESSIKRWLESTDKLAIKLSHNPAAEANNNFDQKIYAVRKSV 536 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM--L 359 E + + L+ + + +N Y EA ++ A G + + + L E L Sbjct: 537 EDIRHASGVYFNLLRT-EHSINDYAEEPVEAANQNAGGLCVSRLYKEAGQEQLLVEEDNL 595 Query: 360 RGLAELFLNDLSEKTGSHDI--VRLHRLILQMNRA-LGMFEAQSKLWRLASLAQSSGAPV 416 ++ +++L + +I + + + L + + + S Sbjct: 596 LTGFKILMDNLKKIMLKLEIWAAQYEKWVNTAKIFSLHLNLGTQLFASIEFILTHSDPNF 655 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W + + ++ I + L L+ S +I+TSATL SF +E G Sbjct: 656 VYWMEKNYFQSNTYITLRSSPIDIGKLLYEKLFASKKAVILTSATLSIAGSFDYFKERVG 715 Query: 477 LKEKAGDR-FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 L + + +DSPFN+ +Q K+ + + E+ + E+A K V + Sbjct: 716 LNLYTEEISELQIDSPFNYGKQAKLFLTSDLPSQNEVPEQFYHTELANIIEKLVNVSQG- 774 Query: 536 GMLVLFASGRAMQRFL----DYVTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVG 590 LVLF S R++++ + D ++LL D R L+E + +++VL G Sbjct: 775 KTLVLFTSHRSLKQTYLRLKPVLEDKEILLLGHNIDGSRSALIEEFVR----NKKAVLFG 830 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 SF EG+D+ GD LS V I K+ F P++ E L + F SLP A Sbjct: 831 TASFWEGIDIPGDSLSSVIIVKLPFWAPSIPIIEARLESLIKQGKNGFWEFSLPQAVIRF 890 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 Q GRLIRS +G V++ DKR++ K YG+ L++LP+ ++ ++ + + + Sbjct: 891 KQGFGRLIRSSRDYGAVIVLDKRIIQKKYGRYFLNSLPLKHHQRGDMENLLTQMTDWLGK 950 Query: 711 PR 712 + Sbjct: 951 KK 952 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 186/735 (25%), Positives = 326/735 (44%), Gaps = 51/735 (6%) Query: 5 AALKAQIAAWY-----KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVG 59 LK Y + E+ P++ R Q M +V +L + RHL IEA TG G Sbjct: 235 DPLKDVSFEQYLDGIRQRFMEKYPNYEEREAQTTMFREVYDSLCSD--RHLLIEAGTGTG 292 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRY 118 K+L YLIP + +++ +VVST + LQ+Q+ +D+PLL++I+P D + + GRG Y Sbjct: 293 KSLGYLIPALYYGIQQESKIVVSTHTINLQEQLRQRDVPLLREILPFDFRASIFKGRGNY 352 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C R + + +DL+A +DD +T +++ L + + Sbjct: 353 LCLRKFES----KINAKDLVAPIDDAIT---------ASQMVVWLSETETGDQEELNFGN 399 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP 238 D W +++D SCLNR C +++ C + A+ E A+V + NH+++ ++++ L Sbjct: 400 KGSDFWSTVASDADSCLNRQCPWFKRCYYHRAKHESNIADVCITNHSMLFTDVQADHRLL 459 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSA---EITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 P L++DE HH+ +VA L M +T RL D + L+ + + + Sbjct: 460 -PSYSHLIIDEAHHVEEVAGKHLGMQLNYFSLTHQTTRLFKDARSGLLPALRLRLQQEDD 518 Query: 296 PPLA-----------IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 + + + + H ++L+EL+ + +A R P Sbjct: 519 ERVQAWTETIDTVIPVFQDVKEHWDKLFELLYAFVGESGEAGNDNGQAVCRLRSDTPPKG 578 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRAL-GMFEAQSKLW 403 ++ + L + + ++ D + LI +N + + + L Sbjct: 579 WDDVLTIENNVHTELSRVVKTVDKMATDIKDRLDDQSIQGLITDLNGVVRDLTRVKDDLR 638 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 + Q+S W + + V + VS QL++ + II+TSATL Sbjct: 639 TFLKMEQNSE---VYWIEASTTYRYRSVHLYAVPVDVSKQLQQYFFDVKDSIILTSATLS 695 Query: 464 SLNSFSRLQEMSGLK---EKAGDRFVALDSPFNHCEQGKIVIPRMRVE-PSIDNEEQHIA 519 SF +E GL+ E + V L SPFN+ EQ ++IPR + Q I+ Sbjct: 696 VHKSFQYAEEQLGLEGFEENNRLKTVQLPSPFNYREQALVIIPRNFPTLKGSAGDPQFIS 755 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVEL 575 + + K MLVLF S R +++ + + + + +L QG R Sbjct: 756 MLVSSLADSAVETKGR-MLVLFTSYRMLKQVYEPLKEALMGSGIQVLGQGIDSGNRT--K 812 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 +R +VL+G SF EG+D+ G+ L+ + I ++ F P + P+V + E L+ + Sbjct: 813 LTRRFTQQPETVLLGTSSFWEGVDIPGEALTCLAIVRLPFQPPNHPLVEAKSELLQKQKQ 872 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP 695 PF S+P A Q GRL+R+ G V+IYD R++ YGK L +LP IE Sbjct: 873 NPFMKLSIPQAVIRFKQGFGRLVRTAKDKGIVIIYDTRVIDTYYGKHFLYSLPGPKIETM 932 Query: 696 EVPEGIVKKKEKTKS 710 + + + + +E ++ Sbjct: 933 HIDQMVPRMREWLQT 947 >UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassified Gammaproteobacteria RepID=A4A9L6_9GAMM Length = 707 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 224/713 (31%), Positives = 343/713 (48%), Gaps = 37/713 (5%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLA 51 AL+ A K I Y A+ + PR QRQMIA+VA TLA E Sbjct: 3 ALSPADKDAIREAYTAITDA-RGLTPRWGQRQMIAEVANTLARLSPSMGAADTEGSPIAV 61 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFT 110 IEA TG GKT++Y+IP + +AR K LV++TA VALQ+Q+ KDLP +KK D F Sbjct: 62 IEAGTGTGKTIAYVIPALVMARALNKRLVIATATVALQEQLVHKDLPDIKKGSGLDFSFQ 121 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGD-LDTYKWD 169 A GR RY+C L L + E + DE++P + L D L WD Sbjct: 122 LAKGRRRYLCLSQLDRLMARESGGGQTMGLYPDEVSPALARDALESYGLMLDALARGDWD 181 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 G RD+ I+D W ++ D+ C R C R C F+ AR +QEA+VVV NH LV++ Sbjct: 182 GDRDNWSAPINDADWFPVTADQGQCTGRRCPNIRNCSFYRARDGLQEADVVVTNHDLVLS 241 Query: 230 AME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVA- 284 + A+L P++ + + DEGHHLPD A + + T W K Sbjct: 242 DLALGGGAILTPPEDTIYIFDEGHHLPDKALNHFASFCRLPSTLSWLGDSRKALAKGAPL 301 Query: 285 -TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 + P A+ + L +++ E A++ + E + RF G +P Sbjct: 302 LATLPGLSTVLEPLPALFDDLQLRLQQIAEKAAAIMASAGDF-----EEQLRFEGGVVPP 356 Query: 344 EVLE----ICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 ++ + + + A+LT L L + L +++ + L + + L E Sbjct: 357 DLQQATASLASQWARLTGRLITLEAGIDDALEDESFASVRDELEAWQMAVGGMLVRAEGV 416 Query: 400 SKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 L++ A+ A P +W R + +L + HC I +D L LW +I+T Sbjct: 417 LSLFQDFAADAAEESPPRARWLKRRADDEELAIDLHCSHILAADILREQLWDRAAGVILT 476 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SAT+ +L SF R + SG+ E R+ + SPF++ + + +P M+ EP + H Sbjct: 477 SATMTALGSFDRFRARSGVPEDG--RYKIVASPFDYGK-ATLHVPAMKSEPG--DAPAHT 531 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHR 577 E+ +++ G LVLF+S R M D + + R +L Q D + ++ HR Sbjct: 532 RELIELLPDLLDA--GEGSLVLFSSRRQMNDVYDGLPVEWRSRILRQDDYSKQEILRRHR 589 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 + + +G +V+ GL SFAEG+DL G V I K+ F D+PV EWL++ R Sbjct: 590 ETIDDGRGAVIFGLASFAEGVDLPGGYCQHVVIAKLPFAVPDNPVDAALAEWLEAQGRNA 649 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 F S+P A+ L+Q GRL+R+ G V + D+R++T+ YG+ +LD+LP F Sbjct: 650 FMEISVPDAALKLVQASGRLLRTETDVGRVTLMDRRVITRRYGRAILDSLPPF 702 >UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3T5_DESAC Length = 850 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 178/730 (24%), Positives = 282/730 (38%), Gaps = 87/730 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 A + A + L + + R Q +M VA+ + IEA TG GK+L+YLIP Sbjct: 131 AHVLAAHGPLASHLGSYEERPEQLRMALAVAEAF--NQNGLATIEAGTGTGKSLAYLIPA 188 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTAL 127 I A + ++ + +ST + LQ+Q+ SKDLPLLK+++ + GR Y+C R L + Sbjct: 189 IMWALDNEQPVAISTNTINLQEQLISKDLPLLKEVMDREFHSVLVKGRNNYLCLRRLDSA 248 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 Q+ + +L G RD +W + Sbjct: 249 HREPDLFQNEQSGELAQLHEWAAATNV---------------GSRDELTFIPSSAVWMEV 293 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD-------P 240 + C C +Y C F ARR A+++V NHAL+++ + A + P Sbjct: 294 CCEMDQCPRTRCPHYSRCFFHKARRRAAHADLLVVNHALLLSDLSLRAETENYSAAAVLP 353 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL-------------DLFTKLVATCM 287 +V DE HHL D A + + Y L L + L Sbjct: 354 PYSRIVFDEAHHLEDAATRNFSIRLSHLSFAYSLNRLVHPRKPEKGLLPRLLSTLARELP 413 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELI-----------------ASLNNILNLYMPAGQ 330 + E C +L + + AS N P Sbjct: 414 DTLSALYDSLYRRIETAALDCRQLRDDLGETFTGQRDKLLQTDESASANGFCWRITPQCT 473 Query: 331 EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH--DIVRLHRLILQ 388 E E + + +++ C+ L+ + L E L E+ DI + I Sbjct: 474 ETERWLVLQKGFAPLIKQCESLSNHLDQLIKACEQLPEKLFEQVSGQLTDIRAMSGRIQC 533 Query: 389 MNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH---LWFHCVGIRVSDQLE 445 M L + S+G W E G+ LW + I V+ L+ Sbjct: 534 MGSELA-------------IVLSAGDSACTWIEINESRGRKRDKILWLNSAPISVAATLK 580 Query: 446 RLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIP 503 + ++ I+ TSATL F + +GL R + LDSPF+ Q ++VIP Sbjct: 581 QAVYDRFRSIVFTSATLTVNRQFHYFHQRTGLNLCPEKRRQQLCLDSPFDFASQARVVIP 640 Query: 504 RMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRL 559 V P+ N +AE +Q VLF + +++ + + Sbjct: 641 TDIVPPTHQNYAAMLAEQV----EQAVIASEGRSFVLFTAYSLLKKLYNELEPPLHARGF 696 Query: 560 MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPID 619 L QG R+ L++ R ++ +L G SF EG+D+ G L QV I ++ F Sbjct: 697 NCLYQGQSARHLLLKKFRL----DQKHILFGTDSFWEGVDVPGQALQQVIITRLPFRVPT 752 Query: 620 SPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 P+ I E L+ + PF ++P A L Q GRLIR G V+I D+R+++K Y Sbjct: 753 EPIQIARSEHLEQMGVDPFMHYTVPQAVLRLKQGFGRLIRHRQDRGVVLILDQRVISKGY 812 Query: 680 GKRLLDALPV 689 G+ L++LP Sbjct: 813 GRIFLNSLPP 822 >UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1QX31_CHRSD Length = 721 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 241/718 (33%), Positives = 349/718 (48%), Gaps = 36/718 (5%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE----------GRHLA 51 L + LKA I Y+ + + + + PR QR MIA++A+TL G E Sbjct: 8 GLDSELKATIQTAYRRVLDSL-ELTPRYGQRLMIAEIARTLGGIESDDAGRRLSNEHVCV 66 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 +EA TG GKTL+YL+ + IA+ K LV+STA VALQ+Q+ DLP LK D +F Sbjct: 67 LEAGTGTGKTLAYLLAALPIAQARGKRLVISTATVALQEQVLHHDLPALKAHSGLDFEFA 126 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 A GRGRY+C L L F + + + + Q ++ +W+G Sbjct: 127 LAKGRGRYLCVARLDQALEGGEDNPTLSLFEEAMSSGDGDDFQALAQEMADAYSAGRWEG 186 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 RD IDD WRRL+ D C NR C ++ C FF ARR + +A+V+VANH LV+A Sbjct: 187 DRDSWPTGIDDADWRRLTIDHRQCTNRRCGHFGACAFFRARRGLDQADVIVANHDLVLAD 246 Query: 231 M--ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITA--PWYRLQLDLFTKLVATC 286 + VLP PK+ + V DEGHHLPD A D + W R +L Sbjct: 247 LSLGGGLVLPSPKDCIYVFDEGHHLPDKALDHFYHRLPVNGTLRWLRTLKKSLAELNTAL 306 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIAS----LNNILNLYMPAGQEAEHRFAMGELP 342 Q +PE + A L E A L A HRF MG +P Sbjct: 307 GVQ-PTLARLLATLPEAIAALEPRLGEAFAMGHRLAEREEGLPDDATDAVHHRFPMGRVP 365 Query: 343 DEVLEICQ----RLAKLTEMLRGLAELFLNDLS-EKTGSHDIVRLHRLILQMNRALGMFE 397 + + E Q A+L+ L +A++ L EK + + + G Sbjct: 366 EALSEQAQSMVTAFAELSRTLESMADILRESLDPEKATGLPREQAESWLPLVALLHGRAL 425 Query: 398 AQSKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 LW+ +A+ + G P +W T E G L F + ++ L R LW + + Sbjct: 426 EAHALWQAMATPDPAEGIPQARWLTFERIAGDAELTFSASPVSAAETLARHLWGTCHGAV 485 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 VTSATL +LN F RLQE +GL + R+ L SPF++ + +P V+PS N E Sbjct: 486 VTSATLTALNRFERLQERAGLANRY--RYQRLPSPFDYSR-AVLSVPPEAVDPS--NREA 540 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVEL 575 H + F + + +L+LF+S + ++ L+ + + +R ++ Q P+ L++ Sbjct: 541 HERALIDFTKAL---DEREAVLMLFSSRKQLRAVLEALPETVRERVVAQNHLPKRELLQR 597 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 HR RV GE S++ GL SFAEG+DL G+ L+ V I ++ F D PV T EW++S Sbjct: 598 HRARVDAGEGSIIFGLASFAEGIDLPGEYLTHVVITRLPFSVPDDPVGATLAEWIESRGG 657 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 PF S+P AS L+Q GRLIR G + + D+R+LT+ YG+ LLD+LP F E Sbjct: 658 NPFMRISVPDASIRLVQACGRLIRKEADQGRITLLDRRVLTRRYGRALLDSLPPFRRE 715 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 177/700 (25%), Positives = 292/700 (41%), Gaps = 49/700 (7%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + L +P F R+ Q M+ V K L G+ + + +EA TG GK+L+YL+P I Sbjct: 237 AVLGPEGILATTLPRFRYRSQQCDMMEQVTKGLNGD--KTVLVEAGTGTGKSLAYLVPAI 294 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 A A++ + +++ST + LQ+Q+++KD+PLL K+ + K GRG Y+C R + Sbjct: 295 AWAKQNHERVLISTHTINLQEQLWNKDIPLLAKLPEYEFKSAIMKGRGNYICLRRWHSFM 354 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + D AFL L GD + D + W R+ Sbjct: 355 KEDNHTPDEAAFLAKILI-------WIYQTNTGDKGELVLNYS--------DFEYWYRVC 399 Query: 189 TDKASCLNRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 ++ CL C Y++E C F A+R+ + A++V+ NH+L+++ ++ + P L++ Sbjct: 400 SESDGCLGNRCQYFKEKCYFMAAKRKAERADIVIVNHSLLLSDANADN-MILPSYGPLII 458 Query: 248 DEGHHLPDVARDALEMSAEITA--PWYRLQLDLFTKLVA----TCMEQFRPKTIPPLAIP 301 DE HHL + A D L + W + L +KL T ++ + Sbjct: 459 DEAHHLENCATDHLGRAVTRVGVLRWLAVATKLLSKLEKIAFLTIDGRWEKLLLQSSETK 518 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE----LPDEVLEICQRLAKLTE 357 +R +E+ S ++ RF G +P + + L L Sbjct: 519 QRTREAATSFFEMALSWIKSIDRNGE--GRCSMRFDRGGNIDGIPSIPVAVDAELDNLLV 576 Query: 358 MLRGLAELFLNDLSE-KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 LR L + + + + G+ +I + + Q L + + Sbjct: 577 NLRTLCQALVKISDQLEEGTVITGGGPGIIRDLAAWASV--GQELSDNLEWICRHQEESQ 634 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W + F I V L L+ +++TSATL +F G Sbjct: 635 VYWVE--GGGDSPEVVFRSAPIDVGPLLYEKLFSENRPVVLTSATLSVDGNFKHYINSVG 692 Query: 477 LKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 L + + L+SPFN+ EQ + + R + P + +++ E++ + Sbjct: 693 LDFLPQENILEKHLNSPFNYNEQAILCVARDILPPGQVSNKEYHDELSKAIF-HISMAAE 751 Query: 535 LGMLVLFASGRAMQRFLDYVTDL----RLMLLVQG-DQPRYRLVELHRKRVANGERSVLV 589 LVLF S R+++ + D + LL D R RLVE + G R+VL Sbjct: 752 GRSLVLFTSHRSLRETYQRLKDQYENEDICLLGHELDGSRRRLVE----QFMEGRRTVLF 807 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 G SF EG+D+ G+ LS V I K+ F P + PV + L R F +P A Sbjct: 808 GASSFWEGVDIPGEALSCVIIVKLPFAPPNHPVTEARLQKLSRQGRNGFMEHQIPQAVIK 867 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 Q GRLIR G VV+ D RL+ K YG + ++LP+ Sbjct: 868 FKQGFGRLIRGPEDRGVVVVLDGRLVEKRYGYKFFNSLPI 907 >UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT1_HAHCH Length = 718 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 201/722 (27%), Positives = 338/722 (46%), Gaps = 36/722 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 ++ +K QI + Y+ + PR+ QR MIA++A+ L+ + + Sbjct: 2 VSEGIKEQIQSAYRKYIAA-RNIKPRSGQRHMIAEIARYLSSIELDGEFRRSNDATTCVV 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTA 111 EA TG GKTL+YL+ I A +K +V+STA V LQ Q+ ++LPLL + + K Sbjct: 61 EAGTGTGKTLAYLMASIPFAAALRKKIVISTATVTLQQQVVQRELPLLAEHTDLEFKVAL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L + + + +Q +L + + + + + + W G Sbjct: 121 AKGRGRYICLHKLDSYLAGQ--EQGILLLDGPQESSGPDVDAEAYQRFMNWMVDKGWSGD 178 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 D I++ LW ++TD CLN+ C ++ +C ++ A+ E ++AE++VANH LV A + Sbjct: 179 WDSAPEPIEESLWSTVTTDHRQCLNKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFADL 238 Query: 232 E--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFT----KLVAT 285 VLP P+ + + DE HH+ D A + SA + + L+ + V Sbjct: 239 ALGGGFVLPPPEETIYIFDEAHHMADKALNHFAFSAGLKSSQKMLRGLSRALVEGQSVFA 298 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEV 345 EQ + P A+ + ++ H + + + I ++R+ MG +P+E+ Sbjct: 299 YDEQITNRVSPMAALSQEVHHHLDAVARFLNE--TIEWEENDERATFQYRYPMGVIPEEL 356 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSE-----KTGSHDIVRLHRLILQMNRALGMFEAQS 400 ++ +A + E L L E + G + ++ ++ E Sbjct: 357 RKLSAAMADKVGEMTKELEAVLKRLRELAEKEQPGGAQRQAYDQAVMALSVYQSQVENLE 416 Query: 401 KLWRLA-SLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 +WR+ Q P +W T +E + H + L + LW ++TS Sbjct: 417 DVWRIMGEEVQEGHTPTARWLTTWAKETDSDVVVHVSPTNAAHLLRKRLWSRAFGCVLTS 476 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 ATL F RL GL + G F SPF+ + + + +P + E ++ Sbjct: 477 ATLSVAGRFDRLAGQVGLPD--GSTFAIHHSPFDFNNNCTLELCDLGRDP--QDSESYLE 532 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL--MLLVQGDQPRYRLVELHR 577 ++ + ++ K+ LVLF++ + MQ + D +L +++ Q + +L++ HR Sbjct: 533 MLSQALLRIIDEKQ--ATLVLFSARKHMQFAARALADTKLGSLIITQDSGNKGQLIDTHR 590 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 RV + SVL GL SFAEGLDL GD L V I K+ F D PV T EWLKS P Sbjct: 591 SRVDENKGSVLFGLASFAEGLDLPGDYLKHVIIAKLPFAVPDDPVEATYAEWLKSKGGNP 650 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEV 697 F LP A L+Q GRL+RS G++ I D+RL T++YG+ +L+ALP + + ++ Sbjct: 651 FNQVVLPDAITRLLQACGRLLRSERDSGKISIMDRRLWTRSYGRIILNALPPYKVVSADI 710 Query: 698 PE 699 + Sbjct: 711 RQ 712 >UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae RepID=C1ZB20_PLALI Length = 659 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 185/713 (25%), Positives = 300/713 (42%), Gaps = 78/713 (10%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M LTA + L ++P + R Q +M A T A G HL +EA TG GK Sbjct: 1 MELTAE---NVLGQEGLLARRLPHYEVRGEQLEMAR--AVTAAIAAGEHLVVEAGTGTGK 55 Query: 61 TLSYLIPGIAIAREE---------QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 + +YL+P I A ++ +++ST ++LQ+Q+ S+DLPLL I+P + Sbjct: 56 SYAYLVPAILAATANQGSTVDGGAKRRVIISTHTISLQEQLISRDLPLLNSILPVEFSAV 115 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 GR YV R L A E + + L G DG Sbjct: 116 LVKGRSNYVSLRRLKG------------ALEKSRSLFPTSEAEDQVRSLAGWARETN-DG 162 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 D +W + ++ +CL +NC Y +C ++ ARR + A+V++ NHAL A Sbjct: 163 SLASLDFKPLPQVWDEVRSEHGNCLGKNCPTYSDCHYYKARRRVWNADVLIVNHALFCAD 222 Query: 231 M----ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATC 286 + E +VLPD + +V DE H L VA D L + Y + +L Sbjct: 223 LALRREGASVLPDYQ--TVVFDEAHTLEQVAADHLGLGISSGQIEY-----MLNRLFNEK 275 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE-LPDEV 345 ++ P + ++YE + + ++ + PA A+ L ++ Sbjct: 276 TQKGLIAGYPLEPQRALITRLKHDVYEFFDEIRHRVHDHGPANGRVREPLAIENTLSGDL 335 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRL 405 ++ LA+ L+ E ++V ++ + ++ + Sbjct: 336 RKLATSLAEYAAKLKQEEEKI-----------ELVSASERLISLAGSISQW--------- 375 Query: 406 ASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL 465 + W + L + C I V L L+ +P +I+TSATL Sbjct: 376 ---VEQGRGDSVYWVETTGAQRNLKVKLCCSPIEVGSVLREELFNKVPTVILTSATLAVG 432 Query: 466 N-SFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 SF ++ GL + + L SPFN+ EQ K+V+P +P+ D+ + Sbjct: 433 QQSFDFIRSRLGLTR---SQSLRLGSPFNYREQMKLVLPDGMPDPT-DSPADFEFAVCEK 488 Query: 525 FRKQVESKKHLGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQ-GDQPRYRLVELHRKR 579 ++ V S+ VLF S + +Q R +++ L Q G+ PR +++E RK Sbjct: 489 IQEYV-SQTSGRAFVLFTSYKMLQSCERRLTNWLIRKNFSLYSQSGELPRSQMLERFRK- 546 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 +VL G SF +G+D+ GD L V I K+ F D P++ E +++ PF Sbjct: 547 ---DPAAVLFGTDSFWQGVDVPGDALQNVIITKLPFSVPDHPLLEARVEAIRARGGNPFM 603 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 +P A+ L Q GRLIR+ G VVI D R+ TK YG+ L++LP I Sbjct: 604 EYQVPEAAIKLKQGFGRLIRTKTDRGMVVILDPRIRTKPYGRVFLESLPECRI 656 >UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV Length = 725 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 224/730 (30%), Positives = 342/730 (46%), Gaps = 49/730 (6%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKT---LAGEEGRH------LA 51 MALT +K QI Y+ + D R QR MIA++A+ + +G+ Sbjct: 1 MALTEDVKQQIQQAYRDVLAG-KDIRARYGQRLMIAEIARYMGEITDNDGQRTSPPATCV 59 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFT 110 +EA TG GKTL+YLI I +A+ KTLV+STA VALQDQI KDLP L+K D +T Sbjct: 60 VEAGTGTGKTLAYLIAAIPVAKALGKTLVISTATVALQDQIVLKDLPDLRKHSKLDFSWT 119 Query: 111 AAFGRGRYVCPRNLTALASTEPT--QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW 168 A GRGRY+C L A E + FL D+ + + + + W Sbjct: 120 LAKGRGRYLCMSRLEARLHDEGHGDSDTMPLFLLDQPVDDEARSRATFENMLASYGSRDW 179 Query: 169 DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM 228 DG RDH I D++WR+++TD C NR+C Y+ C FF AR+++ +A+VVVANH LV+ Sbjct: 180 DGDRDHWPEQIPDEIWRQVTTDHRQCTNRHCAYFDSCAFFDARKDLDDADVVVANHDLVL 239 Query: 229 AAME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITA--PWYRLQLDLFTKLVA 284 A + A+LP+P+N L + DE HHLPD A + S + + W + K+ Sbjct: 240 ADLALGGGAILPEPENALFIFDEAHHLPDKALNHFAASVPLNSTRQWLKQLSQALVKMQP 299 Query: 285 TCME--QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 Q L+ +YE + N + + A+ R+ G LP Sbjct: 300 WLPAGSQAAKAVEKISTAGRDLDLALTRVYEEVEQ--NTGWEFNEERRSAQWRYPDGALP 357 Query: 343 DEVLEI-----------CQRLAKLTEMLRGLAELFLNDLSEKT---------GSHDIVRL 382 +++ E+ C+ L L + L+ + + ++ GS Sbjct: 358 EKLAELAGETRIATAGLCRHLGTLVDELQSAFDERKDPELDRDTADSWYPVVGSFHARAE 417 Query: 383 HRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSD 442 +L L + + G+ + + G P +WA R+ + + + + Sbjct: 418 DQLRLWIAWSEGVAIVSDEEEPVVEAPARKGPPAARWAVRQRWDHAEDITLFSSPVLADN 477 Query: 443 QLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI 502 L LW ++TSATL +L F RL+ +GL E + R++ + S F + E + + Sbjct: 478 LLYSRLWSRAYGAVLTSATLTALGRFDRLRSRAGLPEAS--RYLVVPSSFRYAEMATVEV 535 Query: 503 PRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLML 561 P M P+ D + + LVLF S R MQ+ D + + ++ Sbjct: 536 PAMVAMPTDDGFADALVKRLPELW-----AGEKATLVLFTSRRQMQQVRDALAPEYPELI 590 Query: 562 LVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSP 621 L Q D + ++ +H RV G+ SVL G+ SFAEG+DL G L V I ++ F D P Sbjct: 591 LTQDDMAKNEVLRVHCSRVDEGKPSVLFGVASFAEGIDLPGRYLHHVVITRLPFSVPDDP 650 Query: 622 VVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGK 681 + + EW+ PF ++P AS L+Q VGRL+R+ G V I D+R++ + YG+ Sbjct: 651 IEASLAEWVTQRGGNPFMEITVPDASVKLVQAVGRLLRTEQDTGRVTILDRRIVARRYGQ 710 Query: 682 RLLDALPVFP 691 LLDALP F Sbjct: 711 LLLDALPPFR 720 >UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damage-inducible protein G) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXS1_9BACT Length = 847 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 178/715 (24%), Positives = 307/715 (42%), Gaps = 70/715 (9%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L IP + R Q M+ V+ + IEA TG GK+L+YL+P I + + Sbjct: 138 GILSVTIPGYEYRESQVDMLTSVSDAFNNDT--VATIEAGTGTGKSLAYLLPAIFWSVKN 195 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ++ +V+ST + LQ+Q+ KD+P LK + IP+ K GR Y+C R L Sbjct: 196 KERVVISTNTINLQEQLMYKDIPTLKIENIPNFKSVLVKGRNNYICLRKAQNLQ------ 249 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 + ++ +E+++ L DG + ++ ++D++W + ++ C Sbjct: 250 ------FEGDMLIEEREKKQLIHILS--WAEKTRDGSKADLNLLVNDNVWEMVQSEADQC 301 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---------ESEAVLPDPKNLLL 245 C +Y +C F+ ARR A+++V NH L+MA + +S A+LP K + Sbjct: 302 TRLKCNFYNKCFFYSARRNASSADILVINHHLLMADLVLRKETRGYDSTAILPPFKR--I 359 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRL-----QLDLFTKLVATCMEQFRPKT------ 294 ++DE H+L VA + +S L Q D L+ + + Sbjct: 360 IIDEAHNLESVATSNIGLSFSRMRILKPLGKLVNQKDNKKGLLPFLKNKIKDVDFQCNKD 419 Query: 295 ----IPPLAIPERLNAHCE-------ELYELIASLNNILN-LYMPAGQEAEHRFAMGELP 342 I P+ L+ E ++ S+N+ +N ++ G E + R L Sbjct: 420 ITVDITEGIYPQLLDMRIEIYTCVTNTFSDIFESVNSYINNKFLENGVELKLRITDELLS 479 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 + + K L F+ L++ + + + + + + + +++L Sbjct: 480 TPLW--SDSIEKKIRHLCTEIHNFVILLNKLIAAIERLDKESRDILSSLFIDITSCKTRL 537 Query: 403 WRLASLAQS---SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 + S S + +W + F I +S+ L+ L+ + II+TS Sbjct: 538 NTAKNDLFSFIRSEENLCRWIELRRYNDNFFIKFCNAPIDISNALKAYLFDNYRTIILTS 597 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 ATL N+F+ Q+ +GL R + L SPF++ Q I IP +P ++ + Sbjct: 598 ATLTIDNTFTFYQKNTGLHLLPEKRITELILSSPFDYKSQSMICIPTDISDP---DDSYY 654 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQPRYRLV 573 ++ K + + LVLF S R + D + L QG+ R+ L+ Sbjct: 655 KKDLVENLSKLI-AITDGRSLVLFTSYRLLNDIFDMLKPYFTGQGYTCLKQGEDNRHNLL 713 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 E + N + S+L SF EG+D+KGD L V I ++ F + P++ E ++ Sbjct: 714 ETFK----NDKTSILFATDSFWEGIDVKGDALECVIITRLPFKVPNEPIIEARTEAIEMK 769 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 F SLP A L Q GRLIRS G V I+D+R+ TK+YGK + +LP Sbjct: 770 GGNSFYDYSLPVAVLKLKQGFGRLIRSKEDRGVVFIFDRRIATKSYGKVFIKSLP 824 >UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0A9Y9_ALHEH Length = 708 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 237/707 (33%), Positives = 349/707 (49%), Gaps = 28/707 (3%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE-EGRHLA-IEAPTGVGK 60 L ++K +I + + + +P F R+ QRQMIA+VA+TLAGE EGR L IE PTG GK Sbjct: 2 LEESVKQEIREALRQVGQNVPGFRSRSQQRQMIAEVARTLAGECEGRRLLAIEGPTGTGK 61 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYV 119 +L+YL+ GI +AR E + L++STA VALQ+QI +DLP L+ + GR RYV Sbjct: 62 SLAYLLAGIPVARAEGRQLIISTATVALQEQIVDRDLPALQANSGLTFSYGLIKGRRRYV 121 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQE----EQKRCAKLKGDLDTYKWDGLRDHT 175 C RNL L + L ++ E + L DL WDG D Sbjct: 122 CTRNLEQLVGGAAQGEMDLGGPSAGPAHWPRKPQTGELEHLQALYRDLQAGDWDGDLDRR 181 Query: 176 DIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--S 233 D L ++TD+ C R C + +CPF ARR ++E +V+VANH LV+A + Sbjct: 182 PPPAAD-LQGPMTTDRHGCTGRGCPHVSDCPFHRARRGMEEQDVLVANHDLVLADLAMGG 240 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 +LP P+ + V DE HHL A DA + + A L+ +L + + Sbjct: 241 GVILPPPEQVFYVFDEAHHLAARATDAFRAESPLLASV--QWLERLPRLAGQAISLLPEE 298 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNL-YMPAGQEAEHRFAMGELPDEVLEICQRL 352 L ER EL ++ ++ ++ + ++ RF GELP + E+ L Sbjct: 299 AGRHLEALER---AVNELSAMLNEMHGMIRRDWQRMNRDGVWRFPAGELPAPLGELVPGL 355 Query: 353 ----AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASL 408 A++ + + + F +E+ + V RL ++ A E + WRL + Sbjct: 356 RDASAEVEKHYGRIGQAFAKVTAEEGVTPGSVA-ERLAPELGEAASRVEHLADTWRLVAR 414 Query: 409 AQ-SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS 467 Q S PV +W T G+ + + L LW ++TSATL +L Sbjct: 415 EQPSEAPPVARWITALG-SGRPDYLVAASPVSAAAMLRNGLWSRAAGAVLTSATLTALGR 473 Query: 468 FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 F R++ GL+E G R+++L SPF++ + + +PRM +P + E H E+ Sbjct: 474 FDRMRLACGLEEDDGTRYLSLASPFDYRNRAVLHVPRMASDPR--DPEAHTGELIRVLPG 531 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 +E G LVLFAS R + + + + + +L Q ++PR L+ H + V GE S Sbjct: 532 ILE--PEGGALVLFASARQLDAVYEGLPAEWQGRILRQRERPRVELLAAHARAVEAGEPS 589 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 V+ GL FAEG+DL GDL V I K+ F DSPV T EWL+S R PF ++P A Sbjct: 590 VIFGLAGFAEGVDLPGDLCRHVVIAKLPFAVPDSPVEATLAEWLESRGRNPFMDITVPDA 649 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 L+Q GRL+RS G V + D+RLLT YG+ LL+ LP F E Sbjct: 650 GMKLVQACGRLLRSEADSGRVTVLDRRLLTHRYGQALLNGLPPFGRE 696 >UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3_9BACT Length = 661 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 197/698 (28%), Positives = 306/698 (43%), Gaps = 71/698 (10%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 +I + L + +F R Q++M VA L+ E RH+ IEA TGVGK+L+YL+P + Sbjct: 19 EIFSETGMLAKA-KNFEYRREQQEMAVSVATALS--EQRHVVIEAGTGVGKSLAYLVPAV 75 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 A E +K VVST + LQ+Q+ KD+P+++K++P + + GR Y+CP L Sbjct: 76 LWALEHKKKAVVSTYTINLQEQLVYKDIPIVQKVLPVEFEAMLWKGRANYICPLRLERA- 134 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 +A + T Q E +R + DG + D +W ++ Sbjct: 135 ---------IAHAQELFTSPEQAELQRI----WEWAQTTQDGTLSDFSVEPDSSVWAQVC 181 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK------N 242 +++ C ++C +C + AR+ + A+VVV NH L + A + + N Sbjct: 182 SEQHICTTKSCGNNPKCFYQRARKRLLTADVVVMNHTLFFLNLGGIAEQEENESGYLFAN 241 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 ++ DE H + VA + + Y LQ + PKT L Sbjct: 242 DFVIFDEAHTVEQVAAKQIGLGVSQYGLRYALQ------------RLYNPKTKKGLFQVH 289 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE-ICQRLAKLTEMLRG 361 R +E LI +++ + G + R PD V++ + LAKL +M+ Sbjct: 290 RNPNAVKETATLIEEVDSFFDKLGERGDFKKGREYRVRQPDIVMDSLTAPLAKLQQMVVE 349 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWAT 421 +DL G ++ L R I A+ F Q W Sbjct: 350 TLRGIEDDL----GKAELQDLGRRIRDARSAIATFLKQ------------EAEDHVYWIE 393 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN-SFSRLQEMSGLKEK 480 + + Q H H + V+ L LL+ I+TSATL N + + + G E Sbjct: 394 KTGKTQQYH-ALHAAPVDVAAYLRALLFPEGKCCIMTSATLSVGNEALTYFRNRVGADEV 452 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 + + SPF++ Q KI + R +P E +AE F + + VL Sbjct: 453 EARQ---IGSPFDYERQMKIYVTRKMPDPRDSGYEAALAEQIEHFVGMSKGR----AFVL 505 Query: 541 FASGRAMQRFL----DYVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFA 595 F S +AM + + DL LLVQG+ PR+RL+ +K ER VL G +SF Sbjct: 506 FTSYKAMTNLASALRERLDDLDYKLLVQGEGLPRHRLISEFKK----DERHVLFGTESFW 561 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 G+D+ G+ LS V I ++ F D P++ E +++ F SLP A L Q VG Sbjct: 562 SGVDVPGEALSNVIITRLPFAVPDHPLIEARLELIEANGGDAFAEYSLPEAILKLRQGVG 621 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 RLIR+ G VVI D R+LTK+YG+ + ALP P+E Sbjct: 622 RLIRTKQDQGIVVILDNRVLTKSYGQAFMRALPKCPVE 659 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 164/700 (23%), Positives = 292/700 (41%), Gaps = 48/700 (6%) Query: 14 WYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 W++ + E + RA Q +M+ + +T+ EE IEA TG GKTL+YL+P +A+ Sbjct: 250 WWQNVME---GYEVRAGQTEMMTYIYETM--EERAFGLIEAGTGTGKTLAYLLPAAFLAK 304 Query: 74 EEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEP 132 E+QK +++ST + LQ+Q+ K++P L++++P + GR Y+C + L + Sbjct: 305 EKQKKVIISTQTIQLQEQLIKKEVPTLERLLPFPIHVVILKGRSHYLCLQKFARLLQEDH 364 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 D Q GD++ + + W +++D Sbjct: 365 ND------AYDRTVSKAQILVWLLETKTGDVEELSL--------ASHSNRFWNDIASDAY 410 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 SC + C ++ C + AR + ++A++++ NH+L++A + + L PK +LDE HH Sbjct: 411 SCNSSKCAWFSRCFYQHARNDARKADLIITNHSLILADILTSNQLI-PKYDYAILDEAHH 469 Query: 253 LPDVAR-------DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 L D A D L ++ I + L ++ +R ++ Sbjct: 470 LEDTATEQFGQQLDYLSLTHLINRMGSKRGEGLLRQVYDEIYNDYRDTVEKIEETGTKVK 529 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT--EMLRGLA 363 EL+ L+ N A + E V+E R KL E L + Sbjct: 530 FEWYELFLLLNDYVINSNTNFNERGRATVKINAKENSWYVIEEAARRCKLYLEEWLANIN 589 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 + + ++ +D + E L L + W + Sbjct: 590 RIVDILETIESNYNDA---------FTSFIDRVEGVYS--SLIKLLLEQDDHMIYWIEAD 638 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 + + ++ I VS+ L L ++ +I+TSATL N F+ + GL + Sbjct: 639 TKGPKQAIYIKGRPINVSESLADLFFQKKDSVILTSATLTVNNKFNYMIRRLGLSDFY-V 697 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + +DSPF+ +Q K+++P E+ + + E K MLVLF S Sbjct: 698 KTKHIDSPFHWDKQVKLMVPTDMPLIQDAGEKAYAEATVMQIYRIAEITKG-KMLVLFTS 756 Query: 544 GRAMQRFLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 ++ +Y+ ++ ++ QG R K +++L+G SF EG+D+ Sbjct: 757 YDMLKNCYNYLKEMLDDEYAIIAQGVHSGNRT--KLTKNFQQFNQAILLGTSSFWEGVDI 814 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 G LS + I ++ F P D PV + +K PF +LP A Q GRL+R+ Sbjct: 815 PGSDLSIIVIVRLPFTPPDDPVFQAKSTEMKREGLNPFMKLALPQAILRFKQGFGRLVRT 874 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 G V++ D+R+ YGK + +LP P+ + + E Sbjct: 875 THDRGAVIVLDRRITNTKYGKLFIKSLPEIPLVEKSLDEL 914 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 570 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 176/721 (24%), Positives = 301/721 (41%), Gaps = 51/721 (7%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 I + +++ IP F R+ Q M+ V ++ +EA TG GKTL+YLIP Sbjct: 237 TDIIENEELMKQSIPGFELRSTQMDMMKFVEDVFKHDQIG--LVEAGTGTGKTLAYLIPA 294 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + A + + +V+ST + LQ Q+ +K+ ++K I P + + GRG Y+C + L L Sbjct: 295 VIHAVKHDQPVVISTETIQLQSQMLNKEWAVIKDIFPFPVHASLLKGRGHYLCLQKLENL 354 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + + A +L E GD++ + + W + Sbjct: 355 LAEDTNDHYDRAVAKAQLLIWILETD------TGDVEEVNL--------ASTNYRFWMDV 400 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 S+D SC C ++ + A+++ ++A+++V NH+L++ + + P L+L Sbjct: 401 SSDGISCTTPKCPWFTRDYYQRAKQQARDADIIVTNHSLLLTDIRLSHQII-PSYDSLIL 459 Query: 248 DEGHHLPDVARDALEMSAEITAPWYR------------LQLDLFTKLVATCMEQFRPKTI 295 DE HHL D A + + L L+ KL ++ E+++ Sbjct: 460 DEAHHLEDTATRQFGHQQDYISVIQLVNALANDEQQSFLSGALYKKLSSSLREKYQELQR 519 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 ++ ER N +L L+ + + R + + D + Q + Sbjct: 520 ISESLHERWN-------QLFMELHEYGTVGKAEKADTSRRSKVIAMDDHTWKPVQEAIQE 572 Query: 356 TE-MLRGLAELFLNDLSEKTGSHD----IVRLHRLILQMNRALGMFEAQSKLWRLASLAQ 410 T+ R L F L E D + L R I ++ A FE + + L Sbjct: 573 TDGAFRHLITSFRKLLFEIENEADEKGYLNSLERDIENLSTASQAFEDEYE--TFYHLYH 630 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 S W EER + + + VS+ L L+ S +I+TSAT+ +SF Sbjct: 631 SQDEKQVIWMELEERGPRQSITIRSAPVDVSETLADQLFSSKKRVILTSATMTVKSSFDY 690 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 + E GL + L SPF + +Q + +P ++ + AE A+ ++ Sbjct: 691 VIERFGLTDFDLA-VKQLPSPFQYEKQVGLFVPEDMPMIQGTSDRAY-AEACAYHIFRLS 748 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERSV 587 MLVLF S +++ V D+ ML+ QG Q R + K +RS+ Sbjct: 749 GATEGRMLVLFTSYDMLRKTYYAVRDMLDDTYMLIAQGVQTASR--QKLIKHFQQFDRSI 806 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L G SF EG+D+ GD LS + + ++ F P + PV E +K + F +LP A Sbjct: 807 LFGTSSFWEGVDIPGDNLSAIVMVRLPFSPPNDPVFQARSEAVKEQGKNAFMHLALPQAV 866 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEK 707 Q GRLIRS G V++ D+R++T YG +L + + ++ E I + Sbjct: 867 LRFKQGFGRLIRSSTDRGAVIVLDRRMVTTRYGHFFAKSLQDVAVNRMDMDEIIKELPSW 926 Query: 708 T 708 Sbjct: 927 L 927 >UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium RepID=C6JKU1_FUSVA Length = 832 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 177/728 (24%), Positives = 289/728 (39%), Gaps = 57/728 (7%) Query: 7 LKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +K I +++ L + F R Q M + L E + + +EA TG GKTL+ Sbjct: 123 VKIDITPYFEKTGLLSQTFKGFEYRDEQLHMAKHIENGLNDE--KKVIVEAGTGTGKTLA 180 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPR 122 YLIP + A + +K +V+ST + LQ+Q+ +KD+P+ KK++ D ++ GRG Y+C R Sbjct: 181 YLIPSVEWAIKNKKRVVISTNTINLQEQLLNKDIPIAKKVVQGDFRYILVKGRGNYLCNR 240 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 LA E +E + + + + K + G + +D+ Sbjct: 241 KYFNLALGENVN-------FEEFSNSQKTQFKEIIIWGKKTE----KGDKSELPFEVDNS 289 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL----- 237 +W ++ C C Y EC F +R E + A++++ NH + + + + Sbjct: 290 VWELFQSETDICAGAKCPYKGECFFLKSREEKKNADILITNHHMYFSDLAIRKEIGFNTE 349 Query: 238 --PDPKNLLLVLDEGHHLPDVARDALEMSAE-------ITAPWYRLQLDLFTKLVATCME 288 P+ L+V DE H++ VARD A + + T + + Sbjct: 350 YSILPEYGLVVFDEAHNIEKVARDYFSYEASKYSFTKIMNQIFATEGKKKNTGSLDILLN 409 Query: 289 -----QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 + I I E H E N+I+ ++ GQ F + Sbjct: 410 YIKNTSLDSRNILEKEIKEIKIKHKSLFLEGREYFNHIIEVFSK-GQMGTFTFRAKKEEM 468 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS-HDIVRLHRLILQMNRALGMFEAQSKL 402 E L E ++ + D I + E Sbjct: 469 EHSPFLSSLIDFREKFTSEYNSYMRKVRSLIKEIRDEEDEQGTINDFIKYTDRLENFFN- 527 Query: 403 WRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 + W R+ L +++ ++L++ L+ ++ II TSAT+ Sbjct: 528 -NFRFINDFDDEEFIYWIEVNSRKSNSKLV--ATPLKIDNELQKNLYINLKQIIFTSATI 584 Query: 463 RSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMA 522 + FS +E GL+E D+ + SPF++ +Q K+ IP PS N I+E Sbjct: 585 AIGSDFSYFKESIGLEEDTLDKV--IHSPFDYDKQMKVYIPDDIPNPSDRNFVDEISE-- 640 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVELHRK 578 F K + K VLF S A+ + D + L + G PR LV ++ Sbjct: 641 --FLKALLIKSKGKTFVLFTSYSALNYVYYLLRDDLEANGIELYIHGMAPRTHLVNMYI- 697 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 NG VL G SF EG+D+KG LS V I K+ F PV E + + + F Sbjct: 698 ---NGRNPVLFGTDSFWEGVDIKGKQLSSVIIVKLPFKVPSDPVTEAIIENITAQGKNSF 754 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 +P A Q +GRLIRS G V I D R++ K YGK ++++P I Sbjct: 755 IEYQIPEAVIKFKQGIGRLIRSKTDHGTVTILDNRVINKRYGKYFMESIPTRNIRIVG-K 813 Query: 699 EGIVKKKE 706 ++K E Sbjct: 814 SAVLKDIE 821 >UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6H8_9PLAN Length = 666 Score = 568 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 181/718 (25%), Positives = 311/718 (43%), Gaps = 75/718 (10%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 ALT + I + +++ + R Q +M VAK + ++ +HL +EA TGVGK+ Sbjct: 4 ALTTDV-LSILGSDGKIAQRLEKYEHRPEQLEMAEAVAKAI--DQKQHLLVEAGTGVGKS 60 Query: 62 LSYLIPGIAI--------AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAA 112 +YL+P I + +++K L+VST ++LQ+Q+ +D+P L ++P + Sbjct: 61 FAYLVPAILATCKQNETRSGKDRKRLIVSTNTISLQEQLIHRDIPFLNAVLPVEFSAVLV 120 Query: 113 FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 GR Y+ R L + T + +EE + ++ DG R Sbjct: 121 KGRSNYISLRRLKGAVERAGS------------TFSKEEELSQLDQIV-QWSHKTTDGSR 167 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME 232 + +W + ++ +CL + C Y +C ++ ARR + A+V+V NHAL + + Sbjct: 168 ADLEFRPIPKIWDEIQSEHGNCLGKRCATYNDCFYYRARRRVWNADVLVVNHALFFSDLA 227 Query: 233 --SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQF 290 E P ++LDE H + VA D L +S + Y LF KL + Sbjct: 228 IRREGSSILPDYDTVILDEAHTIEAVAGDHLGLSITNSQFDY-----LFNKL-------Y 275 Query: 291 RPKTIPPLAIPERL---NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE 347 +T L + L H L ++ L + L + + A R ++ Sbjct: 276 NDRTQKGLLLHHNLVDCQQHVTRLRFMVEDLFDHLLEWQDSSGLANRRIR------QLPP 329 Query: 348 ICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS 407 I +++ +L + L + ++ + +L + Sbjct: 330 IENCVSQEMRLLAARIAEYAFTLKNEEEKIELSAAAERCTALGDSLNSW----------- 378 Query: 408 LAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN- 466 L Q + A W R + + V L L+ +I+TSATL + Sbjct: 379 LTQQAEADSVYWVE-ATRGRHQRVKMVNAPVDVGPVLRDELFNQAQTVILTSATLAVGDQ 437 Query: 467 SFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 FS + GL + + L SPFN+ EQ ++++P +P +N + A +A + Sbjct: 438 DFSFTRSRLGLTQ---SEELKLGSPFNYQEQVRLILPAAMPDPG-ENPAAYEAAVAEKLK 493 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQ-PRYRLVELHRKRVA 581 + +E + LF S + MQ+ D ++++ L L +QGD PR ++E R Sbjct: 494 QYIE-QTDGHAFALFTSYKMMQQCADRISGWLSEHNLALYLQGDGLPRSLMLERFR---- 548 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 N R VL G SF +G+D+ GD L+ V I K+ F D P++ E +++ PF Sbjct: 549 NNPRGVLFGTDSFWQGIDVPGDALTNVIITKLPFSVPDHPLLEARVEAIRNRGGNPFMDY 608 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 +P A L Q GRLIR+ +G+VVI D R+ TK YG++ L++LP + E + Sbjct: 609 QIPEAIIKLKQGFGRLIRTASDYGQVVILDPRVRTKRYGEKFLESLPDCTLIIDEQDD 666 >UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9XI74_9BACT Length = 719 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 189/749 (25%), Positives = 296/749 (39%), Gaps = 99/749 (13%) Query: 2 ALTAALKAQIAAWYK--ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVG 59 A + L AQ+ + + + + +F R Q++M VAK L ++ HL +EA TGVG Sbjct: 11 AAGSDLVAQVESIFSPTGILSRASNFEYRPQQQRMAVAVAKALENKD--HLVVEAGTGVG 68 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRY 118 K+L+YLIP I A K V+ST + LQ+Q+ KDLP+L++++P +T GRG Y Sbjct: 69 KSLAYLIPSILYAIASSKKAVISTHTINLQEQLTQKDLPMLEQVLPIKFSYTMLKGRGNY 128 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C R L + T +EE KR + DG +I Sbjct: 129 LCSRRLFKAMQQSNSL----------FTSPEEEELKRIHEWSK----TTKDGSLSDFEIE 174 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRE-------CPFFVARREIQEAEVVVANHALVMAAM 231 D +W + +++ C + C + E C F AR+ I A+V+V NH L + Sbjct: 175 PDPKVWSHVCSERGLCSPKMCGHQSEFGQQNGVCFFQRARQRILSADVLVVNHTLFFTLL 234 Query: 232 ESEAVLPD----PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCM 287 + KN +V DE H + VA + +S Y LQ + + Sbjct: 235 GGIEEENEGGVLFKNDFVVFDEAHQMESVASKHIGLSVSSGQMRYALQRLWNPRTEKGIL 294 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH-----RFAMGELP 342 R + + L + + + + L E + A EL Sbjct: 295 ATLRQG--KTVTLVADLLREADHFFGEVETACEELRKAQSDQNAGESNAARAKRAWTELR 352 Query: 343 DEVLEICQRLAKL-TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSK 401 E+ Q L + LR + +K ++V +R + + + MF Sbjct: 353 IRKPELVQDNVTLPIQRLREAVSELIKMTEDKDTGQELVECNRRLADLREEVAMF----- 407 Query: 402 LWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSAT 461 S W R + Q + + + V++ L R L+ II+TSAT Sbjct: 408 -------LNQSEEDYVYWVERSGKT-QKNFALNAAPVDVAEFLRRRLFGCDTSIIMTSAT 459 Query: 462 LRSLNS--------------------------------FSRLQEMSGLKEKAGDRFVALD 489 L + G +E + + Sbjct: 460 LSVSEKDLESAKAKAAAAEKKSEPERPARFQKRNEFPGLNYFVRRVGAQEAT---LLQVG 516 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 +PF++ EQ K+ + +P + F K H VLF S MQ Sbjct: 517 TPFHYEEQMKLFVVNKMPDPRDQGYRDALIHWIEHFIKM----THGKAFVLFTSYSLMQD 572 Query: 550 FLDYVT----DLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 D + L+L + VQG PR ++E ++ V SVL G SF +G+D+ G+ Sbjct: 573 VADRMQPFFDKLKLEVYVQGTGTPRSVMLEKFKENVD----SVLFGTDSFWQGVDVPGEA 628 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 LS V I ++ F D P++ E +++ PF SLP A Q VGRLIR+ Sbjct: 629 LSNVIITRLPFAVPDHPLIEARIENIEAHGGNPFSEFSLPEAILKFRQGVGRLIRTKTDK 688 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 G VV+ D R+L K YG+ LDA+P P+E Sbjct: 689 GIVVVLDNRVLVKRYGQAFLDAMPKCPVE 717 >UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTY2_HALHL Length = 711 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 235/715 (32%), Positives = 350/715 (48%), Gaps = 35/715 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEG-RHLAIEAPTGVGKT 61 + IA Y+ +++++P F R Q++MI +VAK + R LAIEAPTG GK+ Sbjct: 2 PEPDITDTIATAYRRVRDEMPGFREREAQKRMIWEVAKAFDADHPHRLLAIEAPTGTGKS 61 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYVC 120 LSYL+ G+ +AR LV++TA V LQ+QI +DLP L + ++ T A GRGRY+C Sbjct: 62 LSYLLGGVPVARSRDLPLVIATATVGLQEQILHQDLPKLARYAGIEVDATVAKGRGRYLC 121 Query: 121 PRNLTAL----ASTEPTQQDLLAF----LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 PRNL L E Q LA P E ++ + LD +W G Sbjct: 122 PRNLNELVGQSGQAESGAQQALAGEVLGTARWPRPPQPGEPEQLQAMAEALDGERWGGDL 181 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME 232 D + DDL +++ SC R C ++ CP + AR + AEVV+ NH L++A ++ Sbjct: 182 DEWADGVADDLRPMITSTSHSCSGRRCAHFEGCPVYAARDRVARAEVVITNHDLLLADLQ 241 Query: 233 -----SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVAT 285 +LP P+ L V+DEGHHL A SA + A W + T A Sbjct: 242 LGEEQGGVLLPPPEQALYVIDEGHHLAAKAVQRFAASARVQAARTWLEEGEGVATDTAAV 301 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNIL-NLYMPAGQEAEHRFAMGELPDE 344 + + PP A +RL E+ + + L + Y + RF G+ PD Sbjct: 302 LPDDTAGE--PPDAEAQRLQERLSEVAAALQEADTFLQHNYRADAEGERWRFRAGQAPDP 359 Query: 345 VLEICQRLAK----LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS 400 V E+ R+A L E L+ + + L + G D L R + ++ + Sbjct: 360 VRELAGRVADPARGLHEALQAFTDRVYSALEAQRG--DTQELERQLPRLGFLRERAANLA 417 Query: 401 KLWRLASLAQSSG-APVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 W+L +++G PV +W R+ E +G + + V+ +L R LW ++T Sbjct: 418 TTWQLLGEQEAAGVPPVARWVERQAESDGAVDHRVSVSPVSVAGELARRLWDRCAGAVIT 477 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVA-LDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 SATLR+L F L+ GL E L SPF++ + +P +R +P N E H Sbjct: 478 SATLRALGRFDHLRSDLGLPEDDALISQGWLPSPFDYSR-SLLHVPALRSDPR--NAEAH 534 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELH 576 +AE+ + + ++ + LVLF S + M+R + + LR L QG++ R ++E H Sbjct: 535 LAEVCQWLPELLD--PYEAALVLFTSRQRMERVAQALPETLREQLQCQGERSREAMLERH 592 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 R+ V G+ S+L GL AEG+DL G V I +I F PV+ T GEWL+ R Sbjct: 593 REAVDAGQGSILFGLAGMAEGVDLPGRYCDHVVIERIPFGVPTEPVIATLGEWLEDQQRS 652 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 F SLP AS LIQ GRL+RS G + I D+R++T+ YG++LLDALP F Sbjct: 653 SFHTLSLPRASLRLIQACGRLVRSEDDRGRITILDRRVVTQRYGRQLLDALPPFR 707 >UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMS2_9GAMM Length = 707 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 209/716 (29%), Positives = 343/716 (47%), Gaps = 37/716 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRH----------LAI 52 L ++ I Y + + R Q+ MIA+VA+TL H Sbjct: 2 LDKQIQKTIQQAYSSFLDN-RGLKARYGQKMMIAEVARTLGSINSNHEGVREGGNHICVT 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL-KKIIPDLKFTA 111 EA TG GKT++YL+ + IA+ K +VVSTA VALQ+Q+ KDLP L + +L + Sbjct: 61 EAGTGTGKTMAYLLASVPIAQARNKKVVVSTATVALQEQLILKDLPQLVTEAGINLTYGL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY C N + + + + D+ +QE L + +WDG Sbjct: 121 AKGRGRYFCISNAEKVLEQQNELGQIALYEDEVAQKLDQEVILEVKGLLSQYASGEWDGD 180 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RD + D +W+ ++D C NR C + CPFF+AR+++ + +++VANH LV+A + Sbjct: 181 RDSLVDTVPDPIWQLSTSDHVRCTNRRCSNFSSCPFFLARQQLDKWDLIVANHDLVLADL 240 Query: 232 --ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCM 287 A+L P++ + + DEGHHL S I + W KL+ Sbjct: 241 SLGGGAILSPPEDTIYIFDEGHHLSTKTTGHFAYSLRIKSSIRWLSTVTRTLNKLLNEAS 300 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMP---AGQEAEHRFAMGELPDE 344 E + ++ ++L ++ + + +LN+ + +G +RFA G +P+ Sbjct: 301 EH-----VVLISYIDKLATPFSDMERSLQEMQTLLNMLLEDKLSGPSDRYRFAQGIIPES 355 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH--DIVRL--HRLILQMNRALGMFEAQS 400 + LA+ E + E ++ L E D+ R + Q+ ++ Sbjct: 356 LQLSALNLAQAAERVVLKFEQIVDLLKEGMDGELADLPREMGEKWFPQIGAFHSRVQSIY 415 Query: 401 KLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 L R S + +GA P +W + + + L H + +D LE LW +VTS Sbjct: 416 GLARSYSASDQTGALPTARWIQKVDGNEGIDLACHSSPVSAADNLEEHLWSQCYGAVVTS 475 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 ATL +L F RL G+ + +SPF+ ++ +P M+ +P N + H Sbjct: 476 ATLTALGRFDRLYTDLGIP--SDSPCAVFNSPFDFQNAAQLRVPAMKTDPG--NPDLHNQ 531 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL--MLLVQGDQPRYRLVELHR 577 E++ + + + ++ LVLF+S R M+ LD + + +LVQGD ++ ++ HR Sbjct: 532 EISDYLIQLLPTET--SALVLFSSWRQMRYVLDAMPATIVADSILVQGDLAKHEILRQHR 589 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +++ + S++ GL SFAEG+DL G L+ V I K+ F D PV T EW++S R P Sbjct: 590 EKIDQQKASIIFGLASFAEGVDLPGKYLTHVIITKLPFGVPDDPVDATYSEWIESQGRNP 649 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 FE +P AS L Q GRL+R+ G++ + D+R +T+ YGK+LL ALP + + Sbjct: 650 FEEWVIPMASMRLTQATGRLLRTEEDKGDITLLDRRFITRRYGKQLLAALPPYRRK 705 >UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N252_9GAMM Length = 639 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 173/699 (24%), Positives = 281/699 (40%), Gaps = 77/699 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 Q+ A L + + R Q +M V++ LA E L EA TG GKT +YL P Sbjct: 6 EQLFAEGGLLSNHVEGYSARTQQIEMAEKVSEALANNE--VLIAEAGTGTGKTFAYLAPA 63 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + + + +ST LQDQ++ KDLP L++++ LK GR Y+C L Sbjct: 64 ML----SGQKVFISTGTKNLQDQLFKKDLPKLREVLSVPLKAALLKGRSNYLCHHRLALA 119 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 S P+ +Q L+ + L + + LW ++ Sbjct: 120 ESE----------------PSAVYQQHTLQTLREWMGKTSSGDLSETDLLEEQSPLWPKV 163 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPKNLL 244 ++ +CL + C Y +C ARR+ QEA++V+ NH L+M+ M S P Sbjct: 164 TSTIDNCLGQQCPDYDDCFIVEARRKAQEADIVIINHHLLMSDMALKASGQGEVLPDADA 223 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 ++DE H LP +A L Q+ ++ ME E++ Sbjct: 224 FIIDEAHQLPAIASQFLGHRVS------SHQIQELSRDSIREMELDATDMEDIRQSAEKI 277 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 + + + L Y Q+ + A+ L + ++ Q L +E RGL + Sbjct: 278 DNRLHQFKLTLGDKEQRLPWYQVVQQQTTTQDALDSLIMAIEKLEQSLEPASERGRGLEQ 337 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 + R +I ++N + + W Sbjct: 338 CY-------------QRCQEIIKKLNVFSD---------------NETDDNLILWLDVRG 369 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 H +S ++ + + TSATL F+ + G+ + Sbjct: 370 ----ASFILHATPQEISQHFQQWIADKPSAWVFTSATLTVAGKFNNFIQQLGIDDPVTKS 425 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + SPF++ Q + +P + VEPS ++ HIA +A + + +LF S Sbjct: 426 W---QSPFDYASQSLLYMPSIPVEPSNNSYNSHIANIAKAVIEY----SQGRIFLLFTSY 478 Query: 545 RAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 RA+ D + D+ +LVQG + +L+ R+ +VL+G SF EG+D++G+ Sbjct: 479 RALHEVADALQDMEYPILVQGAGAKSQLLAEFREH----GNAVLLGTNSFWEGVDVRGEA 534 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 LS V I KI F PV+ L+ PF +PSA L Q +GRLIR + Sbjct: 535 LSCVLIDKIPFASPGDPVLEARINHLRERGGNPFRSIQIPSAVIQLKQGIGRLIRDKRDY 594 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQ--PEVPEGI 701 G +V+ D R L+K YGK + +LP PI Q +V E Sbjct: 595 GVLVLCDPRFLSKPYGKIFMRSLPPMPITQQLDDVAEFF 633 >UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJJ6_POLNA Length = 750 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 213/717 (29%), Positives = 313/717 (43%), Gaps = 38/717 (5%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG--------EEGRHLA-IEAP 55 A + ++ Y + P FI R Q QM+ T G HLA +EA Sbjct: 41 EAARIRLELLYGEVAADWPGFIARPGQYQMMQACLLTFLSAKAPEDEVRTGSHLAQLEAG 100 Query: 56 TGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGR 115 TG GKT++Y + I + +KT++VSTA VALQ+Q++ KDLP L +IIPDL++ GR Sbjct: 101 TGTGKTVAYCLAAIVASEVLKKTVIVSTATVALQEQLFQKDLPRLAEIIPDLRYDILKGR 160 Query: 116 GRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEE-----------QKRCAKLKGDLD 164 RYVC L + + L L + + + + + L+ Sbjct: 161 ARYVCESRLEGVINDVAQDGLLTGELFQDSFGDARRQAAGIVRDRTQAMRWFKSSAKKLN 220 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + WDG D D WR++ + +C C ++R C FF ARR+ A + VANH Sbjct: 221 SGTWDGDIDSLAQPPDPQDWRQVQANAHACNGGQCEHFRNCAFFKARRQAASATLQVANH 280 Query: 225 ALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 ALV+A +++++ L D N L V DE HHLP +A + A + L T L Sbjct: 281 ALVLATLQTDSSLIDAGNTLFVFDEAHHLPGIAAEQFSYRARLGTSS-----KLLTSLRT 335 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNIL-NLYMPAGQEAEHRFAMGELPD 343 + + P + +A L + + + + HRFA G +P+ Sbjct: 336 VALRHGKALPASTRPDPVAFAQLVTGCTDKLAMLERYWQDAQLVSADQPVHRFAQGRIPE 395 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLI---LQMNRALGMFEAQS 400 ++ CQ LA L + + L E S + +++ L Sbjct: 396 ALVLECQELATLIRAIASVVSSIAAALKEPDESKSPTQREEQTHAGVELGVYLSRLGTLD 455 Query: 401 KLWRLASLAQSSGAPVTKWATREERE--GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 KL L++ A P KW E W + + L + LW + + T Sbjct: 456 KL--LSAWATHDRVPWAKWIEWAEDGAGSAPDAWLCASPMTAAQVLSKNLWNKVSAAVCT 513 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SATL + SF +SG+ R + +DSPF++ QG++ I M P Sbjct: 514 SATLTACGSFDFFDRLSGMNRFPERRSLVVDSPFDYATQGELRIAPMTHSPKSPGFSD-- 571 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHR 577 E+ + H LVLF S R MQ + DL +LVQG + R L+ H Sbjct: 572 -ELCDKLPGLLREHPHGQ-LVLFTSRRQMQACHAALPQDLLDQVLVQGVRSRTELLREHG 629 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +RV GERS++ GLQSF EG+DL G L V I K+ F P SPV EWL R P Sbjct: 630 RRVKAGERSIIFGLQSFGEGIDLPGRLCEHVVIDKLPFTPPSSPVEEALAEWLSGQGRDP 689 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 F S+P A L Q GR +R+ + + D RL+T YG+ +L LP FP+ + Sbjct: 690 FAELSVPRAGMKLAQWAGRGVRTVTDRAVITVCDTRLVTMRYGQAILAGLPAFPLVR 746 >UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium RepID=A5TWB3_FUSNP Length = 822 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 167/720 (23%), Positives = 300/720 (41%), Gaps = 55/720 (7%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 A L ++I F R Q +M + + E R + IEA TG GKTL+YLIP I Sbjct: 128 FAKDGILAKEIKGFEYRKEQEEMAHYIQDAI--NEDRKIIIEAGTGTGKTLAYLIPAIKW 185 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALAST 130 A +K ++++T + LQ+Q+ KD+PL K II D + GR Y+C R L+ Sbjct: 186 AVANKKKVIIATNTINLQEQLLLKDIPLAKSIIKEDFSYVLVKGRSNYLCKRLFNELSIG 245 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 + + +E+ + K T G + + D+W + + Sbjct: 246 RSID-------IETFSMEAREQIEYILKWGNKTKT----GDKAELPFEVYPDVWELVQST 294 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-------VLPDPKNL 243 CL + C Y +EC + R E EA+++++NH + A + A L P+ Sbjct: 295 TELCLGKKCPYRKECFYMKTRIEKMEADILISNHHVFFADLNVRAETDFDSEYLILPRYD 354 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 +++ DE H++ VAR S E++ + L+ + ++ I E+ Sbjct: 355 MVIFDEAHNIESVARSYF--SVEVSKISFSRLLNRIYQKKNKRKKEKSALIRVEDTIDEK 412 Query: 304 LNAHCEE-------LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 ++ L E I+ L NI + Y ++ + + ++ Sbjct: 413 DLEDSQQYIYLLNALKEEISVLQNIGDEYFEEIRKIYETNTEAPIRKSLNNFEMTKSRFL 472 Query: 357 EMLRGLAELFLNDLSE--------KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASL 408 E LR ++F + L++ + + ++ N L MF+ ++ + Sbjct: 473 ETLRDKKDIFQSKLADFLTLMMSFNNVIDEEKDKNPEVINFNNHLKMFKTYIDSFKFINS 532 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 + W + + ++ + ++ +L +L+ ++ +I SAT+ + +F Sbjct: 533 FEDDN--YIYWLDINSK--RTNVVLTATPLNIAKKLSSVLFDNLDRLIFASATIVANGNF 588 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 + ++ GL E+ + + SPFN+ EQ + IP + +N + + + F Sbjct: 589 NYFKKSLGLDEEDCIEAI-IKSPFNYDEQMSVYIPTDIQD--SENINAFVTDASKFILDI 645 Query: 529 VESKKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGE 584 + K + +LF S + + + D + + GD+PR +L+ K E Sbjct: 646 LL-KTNGKAFILFTSYTMLNQIYYSISKKLIDKGFEVFLHGDKPRSQLI----KEFKEAE 700 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 +L G SF EG+D++G+ LS V I K+ F PVV + ++ F LP Sbjct: 701 NPILFGTTSFWEGVDVQGENLSNVIITKLPFLVPTDPVVSAISKKIEEDGGNSFTDFQLP 760 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVK 703 A Q VGRLIR G + I D R+L K YG ++ALP I+ E + I + Sbjct: 761 EAIIKFKQGVGRLIRKKTDSGNIFILDSRILKKRYGSLFINALPSQKNIKILEKDDIIEE 820 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 169/714 (23%), Positives = 299/714 (41%), Gaps = 52/714 (7%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L +P F R Q+ M+ ++ L + R IEA TG GKTL+YL+P I A+++ Sbjct: 248 DKLALNMPKFEKRESQQIMMKEIYTAL--RDSRFSLIEAGTGTGKTLAYLLPSIYFAKKK 305 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ++ +++ST V LQ QI K++PLL+KI+P + GR Y+C E Sbjct: 306 EEPVIISTQTVQLQQQILEKEIPLLQKIMPFSFEVALLKGRKHYLCLHKFEYALQEEEKN 365 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL-WRRLSTDKAS 193 D+ A ++ + + G RD +I L W R+ +D S Sbjct: 366 YDM-ALTKAKILVWLLQTE---------------TGDRDELNIPEGGKLLWNRICSDVHS 409 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 ++ C + A+ + A++V+ NHAL+ SE L ++ DE HH+ Sbjct: 410 PGGMQSNWFSRCFYQRAKNKALFADIVITNHALLFQDFSSEEPLF-ASCEHIIFDEAHHI 468 Query: 254 PDVARDALEMS----------AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 + A L + + L K++ + R + Sbjct: 469 EEAASRTLGEQFSCMYFQLVLSRLGTLETDDVLSKVYKMMKKSEQASRSTFRMVSHSLKE 528 Query: 304 LNAHCEELYELIASL------NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 L +EL++++ + MP G+L D + E+ R Sbjct: 529 LKFDADELFQMLRAFIFKQTKQEQGISNMPLIYRYNTEVEKGKLWDSITELTNRFVYDIR 588 Query: 358 MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 L E ++ L K +H + + + + ++ +L L ++S Sbjct: 589 KLLTTLEKQVDILQSKIEW----EMHVVTGEFMHLIELLRKMAQALQLLILEKNS---YV 641 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 W E + + + ++++ +I TSATL +SF+ ++E GL Sbjct: 642 TWMETETKGTIHSTVLYGQPVHIAERFADEFLTEKKSVIFTSATLTVNDSFAYIKEELGL 701 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 + A + + SPF EQ K+++ + E++I ++ K ++ K M Sbjct: 702 HDFAP-NTLQVPSPFRFEEQMKLMVSTDVPFIKKASNEEYIESVSTHIAKIAKATKGR-M 759 Query: 538 LVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 LVLF S ++ + + +LL Q + R ++ ++S+L+G S Sbjct: 760 LVLFTSYEMLKEAYTNLKNDEELEGYLLLTQSVNNKSR--SRLIRKFQEFDKSILLGTSS 817 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D+ GD LS + I ++ F P P++ +GEWLK+ F +LP A Q Sbjct: 818 FWEGIDIPGDALSCLVIVRLPFTPPYQPMIEAKGEWLKNQGEDVFAKLALPQAILRFKQG 877 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEK 707 GRLIR+ G V + D+RL + +YGK L ++P P+ + + E + + KE+ Sbjct: 878 FGRLIRTSTDTGTVFVLDRRLTSSSYGKYFLQSIPTVPLYEGPLEELLEQVKER 931 >UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BE15_9GAMM Length = 704 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 213/717 (29%), Positives = 331/717 (46%), Gaps = 46/717 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA----GEEGRHL------AI 52 L+ LK I + Y D R Q+ M+A VA+T EEG + I Sbjct: 2 LSDDLKQSIQSAYTTYLNA-RDLKARHGQKHMLAQVARTFGTIELDEEGVRVSETPVGVI 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKT+ Y + I IA+ K LV++TA VALQ+Q+ SKDLP +L Sbjct: 61 EAGTGTGKTIGYALSAIPIAQSLDKKLVIATATVALQEQVVSKDLPDILSNTDLQFNAVL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L L ++ ++ + + + + ++ + +W G Sbjct: 121 AKGRGRYLCTHKLEQLIQFYSGTVVAMSLFEETMEAD-EATLNQYNEMMTSFGSGEWSGD 179 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RD +DD LWR L++ CLNR C +Y+ CPFF AR+ + +A+V++ANH LV+A + Sbjct: 180 RDQWPDKLDDSLWRTLTSSHRECLNRRCPHYQNCPFFEARKALDDADVIIANHDLVLADL 239 Query: 232 --ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 A+LP P++ L V DEGHHLPD A + ++T + Q D + K + Sbjct: 240 SLGGGAILPAPEDTLYVFDEGHHLPDKALMHF--ANQMTVKYLLNQFDNWKKQL------ 291 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE------LPD 343 PK LA + ++ + + + + L+ A Q HR P+ Sbjct: 292 --PKLRLELAYGDSSEFLIDQFSDQLNAAHEQLSFAWSALQPWFHRLEETNDQLTLHQPE 349 Query: 344 EVLEICQRLAKLTE-------MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF 396 +++ + L L L + E LS T + RL + + R L Sbjct: 350 QLVPVSSILEPLLSPMTGVYTSLTAIEESIRKRLSNTTDLDEKERLQNAMPLIGRWLSRT 409 Query: 397 E-AQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHI 455 E A+ + AP +W R L + + + L+ LW Sbjct: 410 EPAKDLVSSWLQTDSPDYAPTARWMERINTPDVQDLSLNTSPVTANAVLKAYLWNRCCGA 469 Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 IVTSATL F R +G+ + A + + SPF++ ++P VE E Sbjct: 470 IVTSATLTVEARFDRFLAQAGISDAA--HLLQVPSPFDYPNLVTAIVPEFAVEGGA--RE 525 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVE 574 H + Q+ K G L+LF+S M + + D + ++ +Q D P+ L+ Sbjct: 526 AHSESIVRLIESQL--PKETGNLILFSSRAQMYEVYEALPVDWQDVITLQDDLPKTALIA 583 Query: 575 LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN 634 HR+R+ G S L GL S AEG+DL G+ L+ + I K+ F D P+ T WL+S Sbjct: 584 HHRERLEEGAGSTLFGLASLAEGVDLPGNYLTHLVIAKLPFGVPDDPISSTLSLWLESKQ 643 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 PF+V +LP+A+ ++Q GRLIR G + + D+RL+TK YGK ++++LP + Sbjct: 644 LNPFQVVTLPAATIRMVQACGRLIRHENDRGTIWVMDRRLVTKRYGKTIINSLPNYR 700 >UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS96_9GAMM Length = 668 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 215/675 (31%), Positives = 331/675 (49%), Gaps = 24/675 (3%) Query: 34 MIADVAKTLAGEE--GRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQ 91 MIA VA L+ + R +EA TG GKT+ YLI + IAR +KT+VV+T +ALQ+Q Sbjct: 1 MIATVANALSDNDPDKRLAVVEAGTGTGKTVGYLIAALPIARALKKTVVVATGTIALQEQ 60 Query: 92 IYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPN-N 149 + KDLP L + D GRGRY C + ++ L +DE+ N N Sbjct: 61 LIHKDLPELLEACGWDHSCALVKGRGRYACNLKMEQCLDAIKSKDAGLFLFEDEVAFNPN 120 Query: 150 QEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFV 209 + + ++ L WDG RD + I D WR L+ D+ C R C + +C FF Sbjct: 121 VQTEDLYREMSDALAEGTWDGDRDSWESRIQDVEWRALTIDRRQCSGRRCRFVNQCAFFN 180 Query: 210 ARREIQEAEVVVANHALVMAAME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI 267 AR E++E+E +VANH LVMA + A+LP P++ + + DEGH + D A + Sbjct: 181 ARNELEESECIVANHDLVMADLALGGGAILPPPEDCIYIFDEGHRIGDTAIRHFGAECRV 240 Query: 268 TAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMP 327 L+ K + F T +P RL ++ EL+ IL + Sbjct: 241 NNS--ITWLERLQKQCKGQVPVFEKDTALAEQLP-RLEKGATKIIELLNVAYPILQQALE 297 Query: 328 A---GQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD----IV 380 + ++ +R+A G++ + + +I +LAK T G E+ ++ L++ G Sbjct: 298 SADYPEDGRYRYANGDIGEGLRDIASQLAKQTSAWLGRLEVLVDTLNDALGDKQYPIPAP 357 Query: 381 RLHRLILQMNRALGMFEAQSKLW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + Q E LW RL ++ P+ W ++ + + + I+ Sbjct: 358 DVELFYQQAGSWQSRAEQLLALWDRLQREIKTGDMPLACWLRLDDSGNNVDISVNASPIQ 417 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 ++ L +LW S +VTSATLR+L SF LQ +G+ + A F+ + F++ + Sbjct: 418 AAELLRDVLWGSCYASVVTSATLRALGSFQTLQRETGIPDFA--HFMTVAGAFDYQQAAV 475 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLR 558 I +P VE + + H + F + + H G LVLF+S R M++ D ++ +L+ Sbjct: 476 IRVPADAVEGNQTD--AHTRYIIDHFAE--YEEPHCGTLVLFSSRRQMEQVYDDLSSELQ 531 Query: 559 LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPI 618 +L+QG +V LH++R+ G SVL+GL SFAEG+DL GD V I K+ F Sbjct: 532 KNILIQGQLSNREMVRLHKERIDQGRTSVLMGLASFAEGVDLPGDYCRHVVIAKLPFAVP 591 Query: 619 DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 D P+ EW+++ F SLP AS L+Q GRL+R+ G V I DKRL+TK Sbjct: 592 DDPLHEALSEWIEAGGGNSFFDISLPIASLRLVQACGRLLRTEKDTGTVTILDKRLITKR 651 Query: 679 YGKRLLDALPVFPIE 693 YG +LL+ LP F E Sbjct: 652 YGTQLLNGLPPFRRE 666 >UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V4E9_9PROT Length = 648 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 168/714 (23%), Positives = 280/714 (39%), Gaps = 82/714 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 A+ + L ++ F PR QR+M VA + L EA TG GKT +YL+P Sbjct: 6 ARFFSEQSPLATEVSSFRPREQQREMALAVADAIKNN--AILVAEAGTGTGKTFAYLVPA 63 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTAL 127 + +++ST LQDQ++ KDLP+++ + + GR Y+C +L Sbjct: 64 LL----GGGKVIISTGTKNLQDQLFQKDLPMVRDALKAPVSIALLKGRANYICHYHLERT 119 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 A +E+ K K+K D+ + +W ++ Sbjct: 120 AHDGR--------------FATREDIKHLGKIKKYAKITSTGDKSGVADVPENAPIWLQV 165 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLL 244 ++ + +CL + C ++EC AR E +A++VV NH L A + + P Sbjct: 166 TSTRDNCLGQECPNHKECFVLHARTEAMKADIVVVNHHLFFADVMLKDDGVAELLPACNT 225 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 ++ DE H LP+ A + T + + R + + L Sbjct: 226 VIFDEAHQLPETASLFFGENLSTTQ-------------LLDLAQDSRIEALTSAKDFAPL 272 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 C+EL + L + + E R + +L L+E L+ + + Sbjct: 273 PKACDELDKAARDLRLVF--------KKEGRMPAI-ATGSFKDFAPQLKNLSEKLKQIND 323 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 + + + G + + + + L + +W Sbjct: 324 MLESQAARSEGLENCWQRAQAFSLL---------------LKNWQDDKADDKVRWLEVYH 368 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 L + + +++ E+ + + I TSATL FS Q GL + + Sbjct: 369 HS----LQLNATPLSIAEIFEKQIGSTARAWIFTSATLAVKQDFSHYQGEMGLLKA---K 421 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 DSPF++ +Q + +P EP N E + + +E+ + +LF S Sbjct: 422 TACWDSPFDYEKQALLYVPSGLPEP---NSEGYTEAVIQAALPMIEASRGR-AFLLFTSL 477 Query: 545 RAMQRFLDYVTD------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 RAMQR + +T LL+QG+ R L+ R+ +VL+G QSF EG+ Sbjct: 478 RAMQRAHEILTAEFDLRGWSYPLLLQGEGSRNELLGRFREH----GNAVLLGSQSFWEGV 533 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D++G+ LS V I K+ F P D PV+ + R F LP L Q GRLI Sbjct: 534 DVRGEALSLVIIDKLPFAPPDDPVLAARIAQISKQGRNAFMEYQLPRTIITLKQGAGRLI 593 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPR 712 R G ++I D RL+TK YGKR+ +LP + E + +PR Sbjct: 594 RDENDRGVLMICDPRLITKQYGKRIWQSLPPMKRTRVETEAVAFFTAQSEATPR 647 >UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2A4_PROVU Length = 688 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 206/700 (29%), Positives = 331/700 (47%), Gaps = 49/700 (7%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVA---KTLAGEEGRH-------LAIEAPTGVGK 60 IA Y++ ++ R Q++M+ ++ ++ + IEA TG GK Sbjct: 12 IAKAYQSFLDK-KGVTARMGQKRMMNLCYGLVNSIKVDDSGNRTSAPAVCVIEAGTGTGK 70 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYV 119 TL Y IP I +A+ ++KTL++STA VALQ+Q+ KDLP ++ D F A GRGRY Sbjct: 71 TLGYSIPLIPLAQAKEKTLILSTATVALQEQVVHKDLPDIRASAGLDFTFAMAKGRGRYF 130 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C A + +L F D+ + L + D W+G RD + I Sbjct: 131 CKLR---AAREAEKEMELFGFQDETIKI-----------LTDEFDDDLWNGDRDTYPVEI 176 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM--ESEAVL 237 D +W++ + C +C +++ CPF+ AR E+ +V++ANH +VMA + VL Sbjct: 177 TDKIWQKANAVAGQCPAHHCPHFKSCPFYKARDEMDSVDVIIANHDIVMADLSLGGGVVL 236 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCMEQFRPKTI 295 P+PKN + V DEGHHL A + + A W D+ LV + + Sbjct: 237 PEPKNCIYVFDEGHHLTSKAISHFSSTCSLDAAIKWSDEIFDMVIPLVDSYDDNM----- 291 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHR----FAMGELPDEVLEICQR 351 LN+ EL + + L +P E ++R F GE P EV+ + Sbjct: 292 --ERYATTLNSLASELKKELVLTKEFLLRNLPFKGEYDNRQTCIFPRGETPHEVIHYAKT 349 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 + K+ E L+ + +K + ++ +++ L + + Sbjct: 350 VGKVLEELKNTNGKMTAIIEDKAKGPEGGEHKMIVGELDNKLSTLVTAWAQFVNVNKRDK 409 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 G P +W R+ + + + + + L+ ++W+ I+TSAT+RSL F Sbjct: 410 QGIPFARWVDVN-RDKKNEIVINSSPVHAGEMLKSIVWKDAHAAIITSATIRSLGKFDAY 468 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 + +GL + SPF++ G + IP+M+ P + H E+ + V Sbjct: 469 LDQAGLPADTP--TLLAQSPFDYENNGVLFIPKMKFSP--KDSAAHTTEVGSLLPTLVLR 524 Query: 532 KKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 K+ G LVLFAS + M + + D ++ +L+QG P+ +V H+ R+ G+ S++ G Sbjct: 525 KR--GCLVLFASKKQMTEVFEMMPDDIQDKILMQGSIPKSEIVSRHKLRIDRGDDSIIFG 582 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 + SF+EG+DL GD + V I K+ F PV +T EW++S+ R FE S+P A L Sbjct: 583 MSSFSEGVDLPGDYCNNVIIAKLPFMVPTDPVSLTLAEWMESVGRNTFEEISVPDACIKL 642 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 IQ VGRLIR+ G V I D RL+TK YG +LD+LP F Sbjct: 643 IQSVGRLIRTEQDTGAVTILDNRLVTKRYGAGILDSLPPF 682 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 176/720 (24%), Positives = 311/720 (43%), Gaps = 49/720 (6%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 ++ ++ + A+ F R Q+QM+ +V EE H IEA TG GKTL+YL Sbjct: 241 EVEDELFSSSGAIARVFDSFEDRPGQKQMMKEVYAAF--EEHAHALIEAGTGTGKTLAYL 298 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 +P A ++K +V+ST + LQ+Q+ +DL LL I+P L+ GR Y+ R Sbjct: 299 VPSAYFAYSKKKPVVLSTYTIPLQEQLLQRDLRLLASIVPFPLRTAVLKGRSHYLDLRKF 358 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + +L E GD++ W Sbjct: 359 EQALQQLENDSYDVCLTKAQLLVWLLETD------YGDVEELNLTT--------GGRSFW 404 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-ESEAVLPDPKNL 243 + +D S L + ++ C + +RR+ ++A++++ NHAL++ + ++ +VLP + Sbjct: 405 PMVQSDPESDLGKYNPWFSRCFYHRSRRQAKKADLIITNHALLLTDVVQTHSVLPSYSHA 464 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWY---RLQLDLFTKLVATCMEQFRPKTIPPLAI 300 V+DE HH + A ++A + + R+ D +E + PLA+ Sbjct: 465 --VIDEAHHFQEAASAYFGLTASFLSVSFAIQRIGDDHHEYGAIARLETLGEQMKQPLAL 522 Query: 301 PE------RLNAHCEELYELIASLN-NILNLYMPAGQEAEHRF----AMGELPDEVLEIC 349 + R +EL+ +I + + + G L +LE Sbjct: 523 DDAKEGLVRFREDTDELFRMIHVFALDAQESNATDVGRISYVYKSFSEEGMLWQAILECA 582 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 RL E + + + EK + R L+ A+ FE + L L Sbjct: 583 MRLQLHGEQVLAALKAAYQVVEEKVEAEYESR--SLLADTQGAIAAFE--ETVQLLYELL 638 Query: 410 QSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 W E + + + + I VS++L + +++TSATL SF Sbjct: 639 LEYDDNYVYWIEVEPKGAKNATYLYAKPIEVSERLADQFFAKKKSVVLTSATLTVNQSFD 698 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 + GL + G + ++SPF++ +Q K++IP + ++E ++A + Sbjct: 699 YQIDRLGLVDF-GVKTKQIESPFSYAQQAKLLIPYDIPDVRGPDDELFAQDIAIKIWRIT 757 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQG--DQPRYRLVELHRKRVANG 583 E + LVLF S +++ YV DL +L L+ QG R RL++L + Sbjct: 758 EVMQ-RKALVLFTSYDMLKKVFYYVKDLNDEGKLALIGQGVTSGSRMRLLKLFK---QAE 813 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 +R+VL G SF EG+DL G+ L + I ++ F P + P+ + E K+ + PF +L Sbjct: 814 QRAVLFGTNSFWEGIDLPGNELECLIIVRLPFAPPNLPLNRAQMERAKAEGKNPFTDLAL 873 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVK 703 P A Q GRLIR+ G G + ++D+R++T YG+ +D+LP P+ + ++ + Sbjct: 874 PQAVIRFKQGFGRLIRTKGDRGLIFVFDRRIVTTRYGRTFIDSLPDVPVYEGKLERLLED 933 >UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW80_HALOH Length = 822 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 172/711 (24%), Positives = 320/711 (45%), Gaps = 54/711 (7%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + +L + + D+ R Q +++ +V + E IEA TG GK+ +YL+P + Sbjct: 128 EFFEPGGSLSQFLNDYEYREQQLEVVREVINSFNNHEFT--LIEAGTGTGKSFAYLVPAL 185 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 A++ +KT+VVST + LQ+Q+ KDL LLKK + D K GR Y+C R + L Sbjct: 186 FWAKKNEKTVVVSTNTINLQEQLIYKDLVLLKKALSFDFKAVMVKGRSNYICKRKIKHLE 245 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 D ++ E+Q + K+ L+ K G + + +D+++W ++ Sbjct: 246 QELNNYFD-----------DDPEKQVQFYKVLDWLEESK-SGSKSELNFVVDNEIWNEIA 293 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD------PKN 242 ++ CL NC ++ C F AR+E+ A++++ NH L+++ + ++ + P+ Sbjct: 294 SETDLCLRTNCPFFDTCYFMKARKEVFSADILIVNHHLLLSDIMLKSEYSERDGGILPRY 353 Query: 243 LLLVLDEGHHLPDVARDALE-------MSAEITAPWY-RLQLDLFTKLVATCMEQFRPKT 294 L++DE H+ ++A L + + +Y + +L L ++ Sbjct: 354 SNLIIDEAHNFDEIASRHLGRPFYYKLLHKYLNKVYYPKNRLSLIPRIRNRFSATNLKNK 413 Query: 295 IPPLAIPE-RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL-EICQRL 352 L I + + + + E LN ++ E R + E +I Sbjct: 414 KEVLKIIDTEIVPQVKRVEEQSHEYFQKLNEFVNQDGEGVIRLTQDIIEGEAYSKIVDSG 473 Query: 353 AKLTEMLRGLAELFLNDLSEKT--GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ 410 L L L N E S DI LI+++ + + +K A+ Sbjct: 474 DTLLGNLNNLGIYLNNLYEEFMTLNSSDISNFEELIIELEAYINRCQHFAKSLEFNIKAE 533 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 W ++ L++ ++VS+ ++++LW ++ ++I+TSATL ++F+ Sbjct: 534 EEN--YVFWIE---KDYNLNVKQENAPLKVSNIIDKILWETMDNVILTSATLTVNDNFNY 588 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 + + G+ + + + ++SPFN+ EQ ++I N ++++ +A K++ Sbjct: 589 FKTILGINKCSQ---LKIESPFNYSEQATLIISDDIPP---ANSKKYLP-VATDILKEML 641 Query: 531 SKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 LVLF S + + D +++L QG PR ++E + Sbjct: 642 LLLRGSTLVLFTSYSMLNYCTKKIEPVLKDDGIVILPQGRYPRKYILETFKA----NSNQ 697 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 V+ G SF EG+D+KGD L + + K+ FP PV E LK + PF SLP+A Sbjct: 698 VIFGTMSFWEGVDIKGDDLRYLVMMKLPFPVPTEPVSAARMEQLKEEGKNPFTNFSLPNA 757 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPE 696 Q GRLIRS G+++ D R+ TK+YG+ L+++P P++ + Sbjct: 758 VIRFKQGFGRLIRSSKDTGKIICLDSRIKTKSYGRVFLNSIPSGCPVKVMD 808 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 182/745 (24%), Positives = 304/745 (40%), Gaps = 69/745 (9%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L + I + L + P + R Q M +V +++ +HL +EA TG GK+L Sbjct: 247 LDESYIESIFSPGGELSKTFPGYEVRDQQIDMALEVVRSINNS--KHLVVEAGTGTGKSL 304 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP----DLKFTAAFGRGRY 118 +YLIP A + + +V+ST + LQDQ+Y+KD+P ++K++ DL+ + GR Y Sbjct: 305 AYLIPSAIFALKNNQRVVISTDTINLQDQLYNKDIPAVRKLLGGKGKDLRVSLVKGRNNY 364 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C + + F L + GD+ Sbjct: 365 LCLNRWERFLRSGINTPEEAKFAVKVLL-------WLQTTITGDVSELPLTSD------- 410 Query: 179 IDDDLWRRLSTDKASCLNRNCYYY--RECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 + W+R+S + +C R C R+C F AR E + + +VV NHAL+++ + S Sbjct: 411 -EKQFWQRVSATEETCTTRVCRNRKGRQCFLFRARVEAESSHLVVINHALLLSDLASNNS 469 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL-------------------- 276 + P L++DE H L D A + L + A L Sbjct: 470 VL-PNYDYLIIDEAHRLEDQATNHLGFEVDSRALHELLNRVMDNSNPVRPEGISARLPVH 528 Query: 277 DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRF 336 ++ +EQ + ER A +E + + L E Sbjct: 529 MQGSRASNASVEQVTNIAMRLAQRTERTRARVDEFFASLGRLLPASMGMQNGYDEHLRLT 588 Query: 337 AMGELPDEVLEICQRLAKLTEMLRGLAELFLN--DLSEKTGSHDIVRLHRLILQMNRALG 394 A ++ + L LR L + + +L E I L+ ++ +A+ Sbjct: 589 AEVRGGEQWEGVLLAWENLKLTLRELVDEVHHCGELLEGLEGLHIAEYEELLAEV-QAIE 647 Query: 395 MFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPH 454 +F Q + + S+ + W + R G + H + V L+ L+ Sbjct: 648 VF-LQDYIHEMNSIITAPTENDVTWISYSHRYGT--ITLHKAPLDVGGILQEELYSKKKA 704 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 +I+TSATL + +F + GL E + + L SPFN+ E +++P EP Sbjct: 705 VILTSATLTTDRNFDYVTGRLGLYEF---QQLMLGSPFNYQETALLLVPTDIPEPGTAGY 761 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR----FLDYVTDLRLMLLVQGDQPRY 570 + + + A E + +VLF S A+Q + +++L QG+ R+ Sbjct: 762 QDAVESLVAELVLAAEGR----TMVLFTSHSAVQATQKAIYRELARHDILVLSQGEGSRH 817 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 RL++ + + R+VL+G +SF EG+D+ GD LS + I K+ F + PV + E Sbjct: 818 RLLQ----QFKSNPRTVLIGTRSFWEGVDVVGDALSLLIIAKLPFEVPNEPVFVARSETF 873 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 F ++P A L Q GRLIRS G VVI DKR+LTK YG + L +LP Sbjct: 874 A----DAFNDYAIPQAILRLKQGFGRLIRSKTDRGVVVILDKRVLTKRYGVKFLTSLPNC 929 Query: 691 PIEQPEVPEGIVKKKEKTKSPRRRR 715 +++ + K R Sbjct: 930 KMQKGPARLLAPEVKRWLGQNSEER 954 >UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRT5_HALO1 Length = 729 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 190/732 (25%), Positives = 295/732 (40%), Gaps = 65/732 (8%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 ++ L+ P + R QR M VA+ LA L +EA TG GKTL+YL+P Sbjct: 14 ERVLGPSGILRACTPHYEDRPEQRHMAHAVAEALA--HQGALLVEAGTGTGKTLAYLVPA 71 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + K +V+ST ALQDQI D+PLL++I+P G YVC R L + Sbjct: 72 LL----SGKRVVISTGTRALQDQITRNDIPLLEEILPRQFTAVTLKGVSNYVCVRKLWDV 127 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD-DLWRR 186 + + P + + + A+ D T G R DD +W Sbjct: 128 S------------ARLAMAPEARRDYQTVAEWARDSPT----GDRAELTAVADDAPIWAA 171 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP----DPKN 242 L+ + + C ++ +C ARR ++A++++ NH L A + + P P+ Sbjct: 172 LTNTPDTRIGPRCPFFEQCFITRARRRAEKADLIIVNHHLFFADLSLRSSYPGARVLPEY 231 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQ---------------LDLFTKLVATCM 287 +V DE H L DV + + + ++ + Sbjct: 232 EAVVFDEAHQLEDVMTEHFGVQVSTVRLAQLARDARHSSAGRNGPLFPNAQSSEKASDDD 291 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEA-----EHRFAMGELP 342 + +P T P ER+ AH E E PAG + FA + Sbjct: 292 DSPKPSTRPMETSTERIIAHLERCAEGFFISVRAALRESPAGDGGRVPLDDSLFADSDRQ 351 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 + + L +L A+ +D +E + AL ++++ Sbjct: 352 EAWFRLDSALDELAAHATLRADELASDSAEAAAYAIGEDNPGNADERAEALAAVAVRAEM 411 Query: 403 WR--LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 R LA LA+ S W + + VS L + L P I TSA Sbjct: 412 LRGDLALLAERSERAFVYWGEAR----ATSVGLCAAPVDVSAYLRKYLLPIAPAAIFTSA 467 Query: 461 TLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAE 520 TLR+ SF L++ GL + D +A+ SPF++ Q + +PR +P Sbjct: 468 TLRAAGSFDYLRQRLGLDSEIADE-LAVPSPFDYARQAILYLPRDLPDPRDAGFTAAACA 526 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLD-YVTDLRLMLLVQGDQPRYRLVELHRKR 579 + VLF S RA++ + L +LVQG PR LVE R R Sbjct: 527 RVVEL----CAITGGRAFVLFTSHRALREAARRLLGTLPHEVLVQGQMPRAALVEQFRAR 582 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 +VL+G +F EG+D+ GD LS V + K+ F P P+V + ++S PFE Sbjct: 583 ----PGAVLLGTGTFWEGVDVPGDALSLVIVDKLPFAPHTDPLVRARVQRIESRGGAPFE 638 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 +P A+ L Q GRLIR G V + D R++T+ YG+ LD LP I + V E Sbjct: 639 GYQVPQAALALKQGFGRLIRRSDDRGIVAVLDPRIVTRRYGRAFLDTLPA-DITRTSVLE 697 Query: 700 GIVKKKEKTKSP 711 + + ++ +P Sbjct: 698 QVRRWWQRGPAP 709 >UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEF3_9ENTR Length = 690 Score = 558 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 210/688 (30%), Positives = 312/688 (45%), Gaps = 41/688 (5%) Query: 23 PDFIPRAPQRQMI----ADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 PRA Q M+ V T + E+ R IEA TG GKTL Y +P I +A E+ KT Sbjct: 25 KGLSPRAGQVDMMAFCSEVVNATPSEEQYRVGVIEAGTGTGKTLGYCLPLIPLAMEKHKT 84 Query: 79 LVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 L++STA VALQ+QI SKDLP ++ + + A GR RY C +E Sbjct: 85 LIISTATVALQEQIISKDLPEIQARAGLSFSYAMAKGRSRYFCQMRCDVHMESEMNAYGY 144 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 + + + W G RD I + +W R++ + C + Sbjct: 145 I--------------RDDVEDISKAFAGGHWTGERDSYPDEISEAVWGRVNAIGSQCPKK 190 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAM--ESEAVLPDPKNLLLVLDEGHHLPD 255 C +Y CPFF+AR + +VV+ANH +V++ + +LP + + V DEGHH+P Sbjct: 191 RCPHYHRCPFFLARALLDSVDVVIANHDIVLSDLSLGGGIILPPQEESIYVFDEGHHVPQ 250 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHC-EELYEL 314 A + SA + A R + +V T E + + H EL +L Sbjct: 251 KAINHFATSASLDAS--RHFMAEIFDMVMTMPESYGGTMEQHVQQLVEFAGHAGNELGDL 308 Query: 315 IASLNNILNLY----MPAGQEAE-HRFAMGELPDEVLEICQRLAKLTEMLRGL---AELF 366 +L LN MP G E++ +RF G +P+ + + K ++ + Sbjct: 309 RGTLLRSLNWRSDHDMPNGVESDIYRFPEGFVPEAIAALFSPALKTVNEMQNIVVKMTAI 368 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 +++ D+ + ++ L L SG P+ +W + Sbjct: 369 VDEAGRDISEDDLALQKMAVGELANRLA--GMHQALASYCGNKTVSGMPMARWINVRRTK 426 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + +C + + L+ LW IVTSAT+RSL+ F E +GL + Sbjct: 427 RSTEVVINCSPVYAGEHLKSELWSKAYATIVTSATIRSLSKFDAFLEQAGLP--VDTPTL 484 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 SPF++ G + IPRMR P+ N E+H AE+ K V + G LVLFAS R Sbjct: 485 LARSPFDYQNNGVLFIPRMRSVPT--NHEEHTAEIIELLPKLVL--RLQGCLVLFASRRQ 540 Query: 547 MQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 M+ + + +LL+QG P+ ++ H+ R+ GE S++ G+ SF+EG+DL G Sbjct: 541 MEEVSKAMPQHISPLLLIQGALPKREILLRHKLRIDRGEPSIIFGMASFSEGVDLPGVYC 600 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 + V I K+ F PV T EWL+ R F S+P A L Q VGRLIR+ G Sbjct: 601 NNVIIAKLPFSVPTDPVGQTLTEWLEKNGRDAFREISIPEACLKLTQSVGRLIRTESDTG 660 Query: 666 EVVIYDKRLLTKNYGKRLLDALPVFPIE 693 V I DKRL TK YGK +L +LP F E Sbjct: 661 AVTILDKRLKTKAYGKDILASLPPFRRE 688 >UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1Z3_9DELT Length = 707 Score = 557 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 183/729 (25%), Positives = 294/729 (40%), Gaps = 78/729 (10%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE---------------GRHLAI 52 +I A L ++P F PR Q M VA TL G E GR + Sbjct: 1 MEEIFAAGGLLSRELPGFEPREGQLAMARAVAATLNGNEPSPGGAPEQPAAAHGGRLVLA 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTA 111 EA TG GKTL+YL+P + + +V+ST + LQ+QI +K++P +++ + P LK Sbjct: 61 EAGTGTGKTLAYLVPAVL----SGRKVVISTNTINLQEQILAKEIPFIRRHLAPGLKALC 116 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 GR Y+C L + L + + N E G D + GL Sbjct: 117 VKGRQNYLCLYRWHQLQINPQGR--LFSKGVSDQDEQNLETIAAWLNETGTGDRGELRGL 174 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 D D LW +S CL +C + +C R+ +++++ NH L + + Sbjct: 175 AD------DSPLWAGISAAAGHCLGSSCPHGADCFITRLRQRAARSQLLIVNHHLFFSDL 228 Query: 232 ES---EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME 288 P+ ++ DE HHL ++A ++ + +DL L Sbjct: 229 AVRRFGHAEVLPRYEAVIFDEAHHLENIATRHFGLALS-----HYQIIDLVRDLEGMAEA 283 Query: 289 QFRPKTIPPLAIPERLNAHCEELY--------------ELIAS-------LNNILNLYMP 327 + R + + R A L+ ELIA+ + + + Sbjct: 284 RLRERDRAGVVQAVRALAAEASLFLDFFPARRGRFPLRELIAAEPRWPELCSTLETAFAA 343 Query: 328 AGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLIL 387 + E E+ VL CQ L + + +L + + G HD + Sbjct: 344 VIRPLEKLAGCEEIWGPVLRRCQDLLATFKTITSPPQLAVPSVGAAPGGHDAMPQPPR-- 401 Query: 388 QMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERL 447 A G+ R + A + W R E+ Q I V+ L+ Sbjct: 402 ---DADGLATTAETPGRPSPPAPVAADSAIYWYERREKTVQ----LAVSPIDVAGHLQEH 454 Query: 448 LWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR-MR 506 L+R + + TSATLR+ N F ++ GL + L +PF++ + + +P Sbjct: 455 LYRQVKAAVFTSATLRTGNDFRYVKARLGLPADCP--ALDLATPFDYAGRTLLYVPDQDF 512 Query: 507 VEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM-QRFLDYVTDLRLMLLVQG 565 P+ E A +++ L+LF S AM Q + + +LVQG Sbjct: 513 PAPN----EAAYPARARQLMREIIGHSRGRALLLFTSVNAMHQAAAELAGKVPYPVLVQG 568 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 + PR L+E R R RSVL+ + SF EG+D+ G+ LS V I K+ F PV++ Sbjct: 569 EAPRSALLEEFRSR----TRSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMA 624 Query: 626 EGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLD 685 + +++ PF +P A L Q VGRL+RS+ G + I D RL +K YG+ L Sbjct: 625 RVDKIRAEGGNPFFDFQVPRAVLTLRQGVGRLLRSNADQGVLAILDVRLFSKGYGRTFLK 684 Query: 686 ALPVFPIEQ 694 +LP P+ + Sbjct: 685 SLPPSPLSR 693 >UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CXN9_MYXXD Length = 662 Score = 555 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 180/690 (26%), Positives = 274/690 (39%), Gaps = 83/690 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 AL+ +P + R Q QM V + A E +L EA TG GKTL+YL+P + Sbjct: 19 GALEVALPAYEHRPEQLQMARAVERAFA--EHSYLLAEAGTGTGKTLAYLVPALL----S 72 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 + +VVSTA LQDQI+ KDLPL++ K+ + GR Y+C A + Sbjct: 73 GRRVVVSTATKTLQDQIFFKDLPLMREKMGLRFEAAYLKGRSNYLCLHRYDAFSKAP--- 129 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 ++EE + KLK + G R D+ W RLST +C Sbjct: 130 -----------QFGSREESRYWPKLKAWAEETD-TGDRSELDLPESFSAWSRLSTTSETC 177 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-------SEAVLPDPKNLLLVL 247 + C Y C R+ ++A+++V NH L A + +E VLP + ++ Sbjct: 178 VGTRCPQYETCFVTRMRKRAEQADLLVVNHHLFFADLALRSSGKRTEGVLPWYE--AVIF 235 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H L D A S +L + + + Sbjct: 236 DEAHALEDAASGHFGCSVSNYR---------LEELARDAVASLKEDDARHAMLRALAARL 286 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 L A L L A M +L + + LA L+ G E Sbjct: 287 RAGADALFAQAPRALGLSGHEASVALRAEVMAKLSTPLEGVRDALAALSAFTVGERE--- 343 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 ++ + R +M L E + + WA + + Sbjct: 344 ---------PELAAITRRSDEMEEQLSFLEK------------AESSDHVYWAEQRGKG- 381 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD---- 483 L+ I V+ +L ++ ++ ++ TSATL + + F GL + G Sbjct: 382 ---LFLRASPIDVAKELRERMYGALDTVVYTSATLAADSRFDFFANRMGLYGEDGQPVTR 438 Query: 484 -RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 R +A+ SPF++ Q + +P +PS + AE + VLF Sbjct: 439 VRTLAVPSPFDYPSQAALYLPTHLPDPSAPGFIEEAAEEIERLCEV----TGGRAFVLFT 494 Query: 543 SGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 S R M R + V L L+QG++P+ +L+E R+ SVL SF EG+D+ Sbjct: 495 SLRNMVRAYELVAPRLPYQSLLQGERPKQQLLEAFRE-----TPSVLFAAHSFWEGVDVP 549 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD LS V I ++ F P+V L+ PFE LP A+ L Q GRLIR+ Sbjct: 550 GDALSLVIIDRLPFASPGDPLVAARINQLQQRGEEPFEQYQLPHAALALRQGFGRLIRTQ 609 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 G V + D+R++TK YG+ LD+LP Sbjct: 610 SDRGIVAMLDRRIVTKAYGRVFLDSLPPAR 639 >UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSI7_9GAMM Length = 631 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 172/691 (24%), Positives = 285/691 (41%), Gaps = 79/691 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + + L + I + PR Q+QM V K + E+ L +EA TGVGKT +YLIP Sbjct: 4 SDLLGAEGPLAKVIEGYAPRDAQQQMAEAVEKAI--EDIDVLVVEAGTGVGKTYAYLIPA 61 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 I + +++ST LQDQ+Y +DLP+L K + LK GR Y+C + Sbjct: 62 IL----SGQKVIISTGTRTLQDQLYHRDLPMLLKTLGVPLKRALLKGRSNYLCLHRMGIA 117 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 ++ ++E+ ++ A++K + + T + + + ++ Sbjct: 118 ----------------DVHHRDREQSEQLAEIKRWSRETIHGDMAEVTLLPENAPILPKV 161 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLL 244 ++ +CL +C +Y +C ARRE QEA++VV NH L MA M + P Sbjct: 162 TSTADNCLGVDCEFYNDCHVVKARREAQEADLVVVNHHLFMADMALKQDGFGEVLPTANA 221 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 + DE H LP+VA + ++ + ++ R ++ Sbjct: 222 FIFDEAHQLPEVASLFFGQAV-------------GSRQLLEFVKDIRAVYHTEIS----- 263 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 + L +L + L + + + E R A L + ++ R A L + L Sbjct: 264 --EADSLIDLSSRLEMSVRDFRLSLGAKEQRQAWQPLLSQA-DVRHRFADLAAAMSTLRA 320 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 + + G + + ++ + +L W Sbjct: 321 ELVEWEEQGPGVE----------------NLLKRCTEFEQRLTLFDHLDEDYIYWLETT- 363 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 +L + + V+ + R + TSATL F + GL E R Sbjct: 364 ---RLGFVLNMTPLSVAKTFRAHMSRYEASWVFTSATLAVGEQFHHFTQSLGLWE---PR 417 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + L+SPF++ I +P EPS + + + A + +LF S Sbjct: 418 TLRLESPFDYANNSIICLPENLPEPSAFHFTDAVVDAAKPILQ----ASRGRAFMLFTSY 473 Query: 545 RAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 RA+ + + ++ L VQG+ PR +L++ R+ VL+G SF EG+D+KG+ Sbjct: 474 RALNHAAERLKSEVAFPLFVQGEAPRTQLLDDFRE----SGDGVLLGTSSFWEGVDIKGE 529 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I K+ F + PV+ + +K + PF LP+A L Q VGRLIR Sbjct: 530 ALSCVIIDKLPFAAPNDPVLQARMDAMKEQGQNPFMDYQLPNAVIALKQGVGRLIRDVHD 589 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G VVI D RL TK YGKR ++LP + Sbjct: 590 RGVVVICDVRLKTKFYGKRFTNSLPPMKRTR 620 >UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG Length = 876 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 183/753 (24%), Positives = 294/753 (39%), Gaps = 79/753 (10%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L+ +I A L +P + R Q +M V + + R IEA TG GK+L Sbjct: 155 LSFPEIERIFAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDD--RVAVIEAGTGTGKSL 212 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCP 121 +YL+P + A ++ +VVST + LQ+Q+ KD+P L++ + GR Y+C Sbjct: 213 AYLVPAVLWAIRNKERIVVSTNTINLQEQLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCL 272 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L + S + D+ E ++ + G R Sbjct: 273 RKLAGVKSEP-------SLFADDPAAGELEAIIAWSEKTAE-------GCRSDLSFIPKP 318 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--------S 233 + W ++ + C C Y C F+ ARR+ A+V+V NHAL+MA + S Sbjct: 319 ETWEEVACEADQCGRIKCPLYARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRS 378 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK-----LVATCME 288 A+LP + L++DEGHHL DVA L L + L+ Sbjct: 379 TAILPPFER--LMVDEGHHLEDVATGHLSSQVSRQGILKLLGRLQNPRKAQRGLLPQLSA 436 Query: 289 QFRPKTIPPL---------AIPERLNAHCEELYELIASLNNILNLYM--------PAGQE 331 Q + L + E+L + +EL + + L + P E Sbjct: 437 QLSREVPVELDDLYRDLAERLEEKLISRTQELAAGAVRAMDAIGLALLSHLKGKGPENGE 496 Query: 332 AEHRFA--------MGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLH 383 + R E DE E+ L L+ L E L Sbjct: 497 KKLRVTPSLFGSKLWQETDDEARELAADLNTFVRELKEFLTG-CGRLPEAVQEK----LS 551 Query: 384 RLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQ 443 L++ + G EA L V +W ++ + + + V+ Sbjct: 552 GLLVDLRGVTGRLEA---LAADLLFFIGRDGEVCRWFEVKKGAKGIAVRLCASPLEVAAS 608 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG--LKEKAGDRFVALDSPFNHCEQGKIV 501 L+R ++ + ++VTSATL +F L+ +G L ++ + L SPF++ Q + Sbjct: 609 LKRTVFDAFRTVVVTSATLAVGETFDYLEGRTGIALLDRGRVTELLLASPFDYERQAFVG 668 Query: 502 IPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF----LDYVTDL 557 IP EP+ ++ + A R S H VLF S + R + + Sbjct: 669 IPADLPEPTSRGFQEALE--VALHRGLAISNGH--AFVLFTSYDLLSRIHGRMAEALRRR 724 Query: 558 RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPP 617 L + QG+ R+ L+ RK +VL G SF EG+D++G L V I ++ F Sbjct: 725 GLTPMRQGEINRHHLLARFRKE----PNAVLFGTDSFWEGVDVQGKALELVVITRLPFRV 780 Query: 618 IDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK 677 P++ + + PF ++P A Q GRLIRS G V+I D R+L+K Sbjct: 781 PTEPILEARADHIALRGGDPFMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRVLSK 840 Query: 678 NYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 NYG+ L +LP + E + + S Sbjct: 841 NYGRFFLRSLPPVRLADGGSGEVFGEMERFFSS 873 >UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJC5_9DELT Length = 698 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 183/717 (25%), Positives = 290/717 (40%), Gaps = 82/717 (11%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGR------------- 48 + AA +I A L +PD+ PR Q M VA TL E Sbjct: 27 SALAARMGEIFAVGGLLARYLPDYEPREGQLSMAQAVAATLDPETAEELPPPETSGPERA 86 Query: 49 -----HLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKI 103 L +EA TG GKTL+YL+P + + +VVST + LQ+QI +K++P +++ Sbjct: 87 PHPTPRLLVEAGTGTGKTLAYLVPAVL----SGRRVVVSTNTINLQEQILAKEIPFIQRY 142 Query: 104 I-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGD 162 + P L+ GRG Y+C R LA + + +L G Sbjct: 143 LAPWLQAMCVKGRGNYLCLRRWHQF----------LAKHRQGQLFTGNQGGAQLEQLAGW 192 Query: 163 LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVA 222 ++ + +++A D LW L+ CL +C + EC RR+ A +++ Sbjct: 193 VEETDSGDKAELSELADDSPLWASLNAAGGHCLGSSCPHGAECFITTLRRKAARAHLLIV 252 Query: 223 NHALVMAAMES---EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLF 279 NH L + + P+ +V DE HHL ++A +S + LDL Sbjct: 253 NHHLFFSDLAVRRFGHAEVLPRYEAVVFDEAHHLENIATRHFGLSLS-----HYQLLDLV 307 Query: 280 TKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG 339 L + E+ R L R + + LN + PA + RF + Sbjct: 308 RDLESMAEERLRENDRARLLQHARA----------LGVEADRLNHFFPA---SRGRFPLP 354 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 L E + L L R LA + G + + L+ R L Sbjct: 355 PLLAEHPDWPGLLEDLRGDFRALA-------GDLEGLAQLAEIWNPPLRRVRELA----- 402 Query: 400 SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 L + + W R E+ ++ I ++ L L + + TS Sbjct: 403 DTLEAICQPPEDDAGNDIYWYERLEKT----VFIGRSPIDIAPHLREHLHNQVKATVFTS 458 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRM-RVEPSIDNEEQHI 518 ATLR+ F ++ GL + + +AL++PF++ + + +P P + Sbjct: 459 ATLRTGKDFRYVKNRLGLPADSPE--LALETPFDYAGRTLLYVPSQEMPPPGASGHPEAS 516 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHR 577 + + L+LF S AM++ + L LL+QGD PR L+E R Sbjct: 517 RRLMRELVQC----SRGRALLLFTSLGAMRQAAAELAGTLPYPLLIQGDAPRQLLLEQFR 572 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +R SVL+ + SF EG+D+ G+ LS V I K+ F PV++ E +K P Sbjct: 573 RR----TGSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMARVEKIKKDGGNP 628 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 F +P A L Q VGRL+RS G + I D RL +K+YG+ L +LP P+ + Sbjct: 629 FFDFQVPRAVLMLRQGVGRLLRSTADRGVLAILDGRLFSKSYGRIFLQSLPPSPVCR 685 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 158/723 (21%), Positives = 298/723 (41%), Gaps = 51/723 (7%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 I L E + + RA Q++M + H IEA TG GK+L+YL+P + Sbjct: 242 TIYEDGGKLSEHLSMYEKRAGQQEMSETIYDAFTSS--NHALIEAGTGTGKSLAYLLPAV 299 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 A ++ + +++ST LQ Q+ +++PL+ I + G+ Y+ + Sbjct: 300 YYAVKQNQKVIISTHTTQLQSQLLEEEIPLIHAISDIPFQAALLKGKNHYISLEKFSIEL 359 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + +A L E GD++ + +R++S Sbjct: 360 YEQGQDNYDIALTKAMLLIWITETN------TGDVEEVQL--------PTSGYIFFRKIS 405 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLD 248 D +N +++ + AR++ Q A +++ NHAL+ M ++ P +++D Sbjct: 406 ADTEKAVNPQSPWFQYSYYQQARKKAQRANIIITNHALLCTDMFNDYAFL-PSYQRVIID 464 Query: 249 EGHHLPDVARDALEMSAEITAPWY-------RLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 E HH + A + + + + + LF V Q IP Sbjct: 465 EAHHFEEQAAHHYGLKMDYMSMQFTCNQLGSSEEDKLFGNFVQAY--QLSNSDIPLYEWN 522 Query: 302 ERLNAHCEELYELIASL------NNILNLYMPAGQEAEHRF----AMGELPDEVLEICQR 351 + L + +E+ +L ++ ++ N + ++R G+ +L++ R Sbjct: 523 DTLKSAKQEIEDLFQAIYYYVSKQHLSNQALSDVGRIQYRMDTEKETGDSWQVILDMSSR 582 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 L+ L + + ++++ S R +LQM L + +L + Sbjct: 583 LSLYFRDLIHILFMVEQRINQEDNSEKNHREE--LLQMVELLQRYIDGLELMFYSG---- 636 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 KW +++ ++ + V++ LE + +++TSATL +SFS + Sbjct: 637 GEVEQIKWIEIDKKGQNHSVFLYSEPADVAELLENEFFHEKESVVMTSATLTMNHSFSFM 696 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 Q+ GL + ++SPF + +Q ++ IP + N + + +A E Sbjct: 697 QKRLGLSSHSC-ITEQIESPFAYDQQVQMFIPNDFPDIKYGNIDDFVYAVAEAIISLAEI 755 Query: 532 KKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 MLVLF S +++ + + + ML+ QG R +K + ++++ Sbjct: 756 TSGR-MLVLFTSYDMLRKAYYVLKEAMEKDKYMLIGQGITSGSR--ARLKKNFQSFDQAI 812 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L+G SF EG+D+ GD LS + I ++ F P + PV+ + LK + PF SLP+A Sbjct: 813 LLGTSSFWEGVDIPGDDLSSLVIVRLPFQPPNHPVIEAKSAMLKKQKQNPFMELSLPNAV 872 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEK 707 Q GRLIRS G V + D R++ YGK +++P PI + I K ++ Sbjct: 873 IKFKQGFGRLIRSSNDRGIVFVCDARIVNARYGKYFTESIPKVPIHYDSTHKLIDKAEQW 932 Query: 708 TKS 710 K Sbjct: 933 YKK 935 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 186/694 (26%), Positives = 286/694 (41%), Gaps = 44/694 (6%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 L DF R PQ Q+ V + L EE L +EA TG GK+ +YL+P Sbjct: 237 EAFLGPGGVLTRHFADFEYRRPQMQVALAVGRAL--EEQTVLTVEAGTGTGKSFAYLVPA 294 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTAL 127 A + + +VVST V LQDQ+ KDLPLL + + LK GRG Y+C R A Sbjct: 295 ALWALDGGRRVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRRWGAA 354 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + + +FL DE + GD + W + Sbjct: 355 VNEQ-------SFLPDEGFLYARIAVWLARTKTGDRAELSLR--------PEEKGFWDGV 399 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 + C + C + C ARR ++A +V+ NH+L+++ ++ E L P LVL Sbjct: 400 AAGDWGCAHAYCRFNSVCFLQRARRAAEQAHLVITNHSLLLSDLKMENRLL-PAYDALVL 458 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE HHL VA + L + A ++ +L E + L E L A Sbjct: 459 DEAHHLEGVATEQLGTTVSRGA--LERWVEGLNRLTGRIGEFYPDNRDEFLRDGEALLAA 516 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 + L+ + + + E FA L L+ C A L G + ++ Sbjct: 517 VRRFFALLGA-------RLRRRELPEEDFAAERLGPRALDACPETAGSYLELAGSLKAYV 569 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW--RLASLAQSSGAPVTKWATREER 425 LS + + ++ L A K L + +++ W R Sbjct: 570 QRLSRAVERLTDSTVPAVQEELRVGLEQELAVGKRLASDLEFVYEAADPGYVFWLEGGGR 629 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR- 484 + + + V + L +RS +I+TSATL +SFS E GL+ D Sbjct: 630 QTAEGV-LRAAPVHVGELLHDGFFRSGKPVILTSATLTVQSSFSFFDERVGLEHLPRDLR 688 Query: 485 -FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + + SPF + EQ + + +P D + ++ ++ + V + L LF + Sbjct: 689 GSLIVGSPFAYAEQALLYVVTDLPDPG-DGDGAYLDAVSDALGRIVGVTRGR-TLALFTA 746 Query: 544 GRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 +A++ + L LL G D R RL++ R N ++VL G SF EG+ Sbjct: 747 HKALRTAYRRLKPVLEKQGLELLGHGLDGGRARLLQYFR----NTPQAVLFGASSFWEGV 802 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D+ GD LS + I K+ F P + PV+ E ++ R F LP A L Q GRLI Sbjct: 803 DVPGDALSCLVIVKLPFEPPNRPVLQARREEVRRRGRSDFNDLCLPQAVLRLKQGFGRLI 862 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 R+ G V+I D RL+ K YG L++LP P+ Sbjct: 863 RTTADRGVVIILDNRLVRKRYGALFLESLPAAPM 896 >UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZI1_9PLAN Length = 666 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 186/710 (26%), Positives = 299/710 (42%), Gaps = 82/710 (11%) Query: 7 LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 L +I + ++P + R Q + +AK LA GRHL EA TGVGK+ +YL+ Sbjct: 2 LPEEILGPAGRIAARLPGYEHRPQQLDLSGGIAKALAA--GRHLVAEAGTGVGKSFAYLV 59 Query: 67 PGIAIAREEQ---------------KTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 P I A +Q K +V+ST ++LQ+Q+ +KDLPLL+ +IP + Sbjct: 60 PAILHATSDQAENAQASEGDEEGPRKRIVISTHTISLQEQLLAKDLPLLRSVIPREFTAV 119 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 GRG YV R L A T + +EE ++ L G Sbjct: 120 LVKGRGNYVSLRRLQYAAERART------------LFSTEEEFEQVRDLVAWSKE-TGGG 166 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 I +W +++D +CL RNC Y EC ++ ARR + A+++V NHAL + Sbjct: 167 SLSDMTIKPKSTVWDEVASDSGNCLGRNCPTYSECFYYRARRRVHHAQILVVNHALFFSD 226 Query: 231 ME----SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATC 286 + ++LPD +LDE H + VA D L +S Y L Sbjct: 227 LALRRVGASILPDYDAA--ILDEAHTIEQVAGDHLGLSITSGQIQYLLS----------- 273 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL 346 + +T L + +L + + + ++ + Q+ +H+ PD+V Sbjct: 274 -RLYNDRTNKGLLVSRKLTTAQQLVMQCYLRADDFFHDCATLAQQRDHKNGRIREPDQVD 332 Query: 347 EICQRLAKLT-EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRL 405 + +R E ++ + RL + +++ + Sbjct: 333 NLLSPSLLKLSREVRRCGEQIDDESERQNFLSAADRLQLISGEISHWIS----------- 381 Query: 406 ASLAQSSGAPVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 A W +++ R G+ + I V L L+ +I+TSATL + Sbjct: 382 -----QDTAGSVYWISQQASRAGKPRVELSAAPIDVGPALREHLFEKTRSVILTSATLAT 436 Query: 465 L-NSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 SF + GL + + + SPFN+ EQ ++++ +P + ++ +A AA Sbjct: 437 GKGSFDYYKSRIGLTQSDA---IRVGSPFNYREQAQLILVSGLPDPGSEKDKFEVA--AA 491 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQ-GDQPRYRLVELHRK 578 K+ + VLF S ++R +T + L L Q G +PR +++ Sbjct: 492 EQMKRYIERTDGHAFVLFTSYAHLERTASLLTRFLAENNLALYSQAGHEPRTQML----A 547 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 R R VL+G SF +G+D+ GD L V I K+ F D P++ E ++ PF Sbjct: 548 RFKENPRGVLLGTDSFWQGVDVPGDALQNVIIPKLPFSVPDQPLLEARLEAIRESGGNPF 607 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 LP A L Q GRLIRS G VVI D R+ TK YG+ L++LP Sbjct: 608 RDYQLPEAVIKLRQGFGRLIRSSRDSGMVVILDPRMQTKAYGRTFLESLP 657 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 186/716 (25%), Positives = 294/716 (41%), Gaps = 59/716 (8%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L EQIP + R Q +M+ VA LAG +L +EA TG GK+L+YL+P I A + Sbjct: 238 GLLAEQIPGYEYRPQQVEMLRAVASALAGNH--YLTVEAGTGTGKSLAYLLPAIYWACSQ 295 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 +K + ++T ++LQ+Q++ KDLP L++++P K GR Y+C R L + P Sbjct: 296 RKRVAIATHTISLQEQLWQKDLPQLRELLPFSFKAALVKGRSNYICRRKLRDYLANPPAG 355 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 + F L + GD K + A L+ D +C Sbjct: 356 EAERLFAMRVL-------RWLEVTTSGDWSEMKLTPEEEGFKFA--------LAADTETC 400 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-SEAVLPDPKNLLLVLDEGHHL 253 C + EC ARRE + A +++ NH+L+++ + + VLPD L++DE HHL Sbjct: 401 TGSACPFNDECFVNAARREAEAANILILNHSLLLSDIRLNNQVLPDYPY--LIIDEAHHL 458 Query: 254 PDVARDALEMSAEITA--PWYRLQLD-----LFTKLVATCMEQFRPKTIPPLA-IPERLN 305 + A + L S + ++R F V + P+ LA E + Sbjct: 459 EEAATEHLGSSVSQASCELFFRRLGRGEQAYSFLGRVRNLARRLPPEGNLELADFLEDME 518 Query: 306 -------AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 A +E +E + L++ + AG + E P + L E Sbjct: 519 LTVTATLAGWQEFWESLGRLSDAAR-WEEAGYTLRFTSRLKETP-AWDNLLSVFGSLEEN 576 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 L GLA LSE + + + + L + + A Sbjct: 577 LSGLASRL-ERLSELLSAAGAGEFAADAGNFAAVVAQYS-----YDLGQILDADPATSVS 630 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W + + + L LL+ +I+TSATL NSF + +GL+ Sbjct: 631 WLE---KNNHGQYILRSAPLDIGPLLAELLFSRKQAVILTSATLTVNNSFDYYHQQTGLQ 687 Query: 479 EKAGDRFV--ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 E DR V + SPF++ Q + R P + + + + Sbjct: 688 ELPADRVVSCQVSSPFDYRSQALVCSIRGLPNPGQLKDADYARAITPVL-TAICPAVGGR 746 Query: 537 MLVLFASGRAMQRFLDYVTD----LRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGL 591 LVL S R ++ + ++ +L QG D R RL+E R+VL+G Sbjct: 747 SLVLCTSHRFLREVYELLSADLNGSGYRVLAQGIDGSRSRLLE----EFIQTPRAVLLGA 802 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 S+ EG+DL GDLL V I ++ FP P + E L + + F SLP A Sbjct: 803 NSYWEGIDLPGDLLRCVIIPRLPFPSPGIPTLAARMEHLAARGQNAFATLSLPQAIIRFR 862 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEK 707 Q GRLIR G +VI D+RLL++ YG+ + +LP +E+ + + K Sbjct: 863 QGFGRLIRRASDRGVLVILDQRLLSQRYGRLFIQSLPPVTLEEVDPAGAPSRIKTW 918 >UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax=Gammaproteobacteria RepID=Y387_HAEIN Length = 640 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 171/691 (24%), Positives = 285/691 (41%), Gaps = 75/691 (10%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 A I + L + I F PRA Q +M V K + + L IEA TG GKT +YL P Sbjct: 8 ANIFSLNGELSQNIKGFRPRAEQLEMAYAVGKAIQNKSS--LVIEAGTGTGKTFAYLAPA 65 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + K ++ST + LQDQ++++DLP +KK + K GR Y+C L + Sbjct: 66 LVF----GKKTIISTGSKNLQDQLFNRDLPAIKKALNFTGKIALLKGRANYLCLERLDQV 121 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + + ++ +K++ ++ K + ++A D + +L Sbjct: 122 IA--------------QGVLGDKSVLAELSKVRKWNNSTKTGDFTECIELAEDSPIIPQL 167 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLL 244 ++ SCL +C Y EC AR++ A++VV NH L A M ES P + Sbjct: 168 TSTAESCLGTDCPNYSECYVASARKKALNADLVVVNHHLFFADMAVKESGFGELIPNAEV 227 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 ++ DE H LPD+A S L ++ + + L ++L Sbjct: 228 IIFDEAHQLPDIASQYFGQS-------------LTSRQLFDLCKDINIVYRTELKDMQQL 274 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 + L +++ +L + + + +++ L+E+++ Sbjct: 275 GTTSDTLLKVVQDFRLLLGNGSNVRGNWRELYTQSAVKKAFELLQEKIDFLSEVIK---- 330 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 L +T R+ + +Q+ R L++++ W Sbjct: 331 --LALGRSQTLDSIFERVESIKIQLKR----------------LSETNIVGYCYWYEGNG 372 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 R+ LH+ + V+D+ L I TSATL +F+ + G++ Sbjct: 373 RQFGLHI----TPLTVADKFGAQLEAKEAAWIFTSATLEVGGTFNHFCQRLGIENATQK- 427 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 L SPFN+ EQ + +PR + N + + +E+ K VL S Sbjct: 428 --ILYSPFNYPEQSLLCVPRYLPNTNQMN---TLNSLGEILLPVIEANKGR-CFVLCTSY 481 Query: 545 RAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 M+ +Y + L +L+QG+ + +L+E K SVLV SF EG+D++GD Sbjct: 482 SMMRGLAEYFREKSHLSILLQGETSKGKLLEQFIKE----THSVLVATSSFWEGVDVRGD 537 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I K+ F D P++ E + PF +P A L Q VGRLIR Sbjct: 538 ALSLVIIDKLPFTAPDEPLLKARIEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIRDVTD 597 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G V+I D RL+ +NYG+ L +LP + Sbjct: 598 RGVVIICDNRLVMRNYGETFLKSLPNSSRTR 628 >UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_ACIBL Length = 674 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 171/701 (24%), Positives = 280/701 (39%), Gaps = 85/701 (12%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 +Q L + P + R Q QM V + L E RHL +EA TG GKTL+YL+P Sbjct: 21 SQFFGPGGVLAKSHPAYEFRRGQLQMAQAVEQALT--EKRHLIVEAGTGTGKTLAYLVPV 78 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII------PDLKFTAAFGRGRYVCPR 122 I +++ST LQ+Q++ KD+P L++ I LK GR Y+C + Sbjct: 79 I----RSGLRVIISTGTKNLQEQLFYKDVPFLERAIFGAESDQKLKVCYMKGRNNYLCRK 134 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L L S P L +E+ Q + GD + Sbjct: 135 KLYDL-SDRPVLNGL-----EEIDQFRQIREWEAVTTTGDRAELT--------AVPEASL 180 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA------- 235 LW +L +C+ C + C RR E+++++ NH L A + + Sbjct: 181 LWPKLDARADACVGSKCKDFERCFITEMRRTAMESDIIIVNHHLYFADLAIKQAADGAPD 240 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 V P+ ++ DE H L DVA +SA +++D + V +++F + Sbjct: 241 VGILPEAAAVIFDEAHELEDVAGSYFGVSAS------NVRVDDLVRDVEFAIKEFHIASP 294 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 L +R + + L+ E RFA + + E + L Sbjct: 295 TLLQASQRARERSQLFFSLVPQ--------------GEGRFAFENRKEFLEENGEEFLAL 340 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 L L+ + K ++ L R ++ +L+ L +S+ Sbjct: 341 QNAL---GHLYSEIQALKEKPDELFNLARRTEELRV------------QLSFLLESNDKN 385 Query: 416 VTKWATREEREGQL-----HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 W R + +++ I VS L+R L+ ++ ++TSAT+ F Sbjct: 386 TVYWVERRGESRRAGRQGHNVFLQATPIDVSAILQRTLFANLNTAVLTSATIAVGGGFQY 445 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 + GL++ R + + S F++ Q +P +P EQ + AA +Q+ Sbjct: 446 ARGRLGLQDA---RELVVPSHFDYETQAVFYVPPDMPDP----REQLFSRKAADRIRQLL 498 Query: 531 SKKHLGMLVLFASGRAMQRFLD-YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLV 589 LF S M D + +L +L QGD P+ L+E R +VL Sbjct: 499 EITRGRAFCLFTSYAQMNDVYDRLLGELDYPMLKQGDAPKSALLEEFR----TTPGAVLF 554 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 SF +G+D++G+ LS V I ++ F + PVV + + F +PSA Sbjct: 555 ATSSFWQGVDVQGEQLSCVIIDRLPFAVPNDPVVAARIRAIDADGGNAFFDYQVPSAVIA 614 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 L Q GRLIRS G V + D R+L K YG+ +++LP + Sbjct: 615 LKQGFGRLIRSLHDRGVVCLLDNRILKKQYGRVFVESLPKY 655 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 159/715 (22%), Positives = 287/715 (40%), Gaps = 53/715 (7%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L+ PD+ R Q M+ V ++ E H +EA TG GKTL YL+P I AR+E Sbjct: 250 LKNAFPDYELRPGQLAMMDAVYQSFLNNE--HTLVEAGTGTGKTLGYLLPAIIFARQEGA 307 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +++ST V LQ+Q+ SKDLPLL+K++ GR Y+ + D Sbjct: 308 RVLISTYTVQLQEQLLSKDLPLLEKLLGFPANAVLLKGRKHYLSLARFEQSLNEADDNYD 367 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 Q GD+D + W ++ + S Sbjct: 368 -------TTLTKMQILVWLTETATGDVDELNLS--------SGGAVFWNKIQ-NGDSKFI 411 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV 256 + + AR+ + A++++ NHA+++ ++ E + P V+DEGH Sbjct: 412 SESGWKSRDFYNRARKSAENADLIITNHAMLLNSLSGENQIF-PSYDYAVIDEGHQFSKA 470 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN--AHCEELYEL 314 A S + + L K+ +Q K L ++ AH EL L Sbjct: 471 AGKHFGFSIDYLSLRL-----LLGKIGLYDQKQLLYKLERLLEGRAAMDGAAHPFELNRL 525 Query: 315 IASLNNILNLYMP------AGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLN 368 +A L ++ + + ++A ++ + +I R K E + Sbjct: 526 VADLQYEMDEFFKLVGIYGKRKLKARKYASSKISFRLTDITPRDFKAVEASAERFSFLVL 585 Query: 369 DLSEKTGS----------HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 DL L+ +++ +G + R A + Sbjct: 586 DLISALEDRLQLLVPLTGELAPGDQALLEEISACIGELRDVRESIRKTIFAGQTAC--AV 643 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W + R Q + I V+ L + ++TSATL SF + + GL Sbjct: 644 WVELDGRAMQNATTVYSQPITVAGNLRDGFFNQKKSAVITSATLSVGQSFDYIMDELGLD 703 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + + ++SPF++ Q ++ +P E + E++++ + E+ ML Sbjct: 704 RFSCQTEL-IESPFDYASQVRLAVPSDLPEINSVPLEEYVSAITEHIISLAEAANGR-ML 761 Query: 539 VLFASGRAMQRFLDYVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 +LF S ++R + V + +L+ QG R + ++S+L G SF Sbjct: 762 ILFTSHDMLRRTYELVKESGFLEEYVLIAQGITSGSRT--RLTRNFQRFDKSILFGTSSF 819 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+ G+ LS + + ++ F P D P+ E ++S PF +LP A Q V Sbjct: 820 WEGVDIPGEDLSCLVMVRLPFSPPDEPLGEARKEAIQSRGGRPFSEHALPEAVLRFKQGV 879 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTK 709 GRLIR+ G ++++D+R++T +YG+ LD++P P++ + + ++ + Sbjct: 880 GRLIRTKNDRGIIIVFDRRIVTASYGRAFLDSIPSIPVKVSPLDAIVDLVEDWLQ 934 >UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivorax RepID=Q0VQH3_ALCBS Length = 668 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 178/679 (26%), Positives = 277/679 (40%), Gaps = 77/679 (11%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P + PR PQ +M V + G L +EA TG GKTL+YL+P + + +V Sbjct: 37 LPGYQPREPQLEMADAVEDVIGS--GATLLVEAETGTGKTLAYLVPALL----SEGPTLV 90 Query: 82 STANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 ST +LQDQ++ KDLP++KK + K GR Y+CP L E Q+D Sbjct: 91 STGTKSLQDQLFFKDLPMVKKALNLPRKVALLKGRANYLCPYRL------ELHQEDARFL 144 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + + GD+ + I D +W +++ +CL C Sbjct: 145 TRETVGQMQIVSHWAARTRTGDIAELQQ--------IPEDAPVWPWVTSTADNCLGTECP 196 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAME----SEAVLPDPKNLLLVLDEGHHLPDV 256 Y ECP AR+E QEA++VV NH L A A P ++ DE H LP++ Sbjct: 197 RYNECPLMKARKEAQEADLVVVNHHLFFADAALRGNGAASELLPTANTVIFDEAHQLPEI 256 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 A + Q + L+ A EL L+A Sbjct: 257 AAAFFADTLS--------------------TRQIQELGRDSLSEAGHTAADLAELNRLVA 296 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 +++ + + E R E+ + + + L + L+ L + FL L++ + Sbjct: 297 AVDKSSMDLRLSLGDGERREPWTEVAEN-KAVIEAGEALLQALQEL-DAFLGPLAKASRG 354 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 D A ++ LA+ + W +R + H Sbjct: 355 MDACSRR--------------ASEQVDCLAAYLKGGQPNRVYWFETFKRS----VVLHST 396 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + V+ QL R+ I+TSATL F +Q GL R + L+SPF+ Sbjct: 397 PLSVAAQLRAQRERNPCSWILTSATLSVGGRFEHIQHRLGLD---SARTLRLESPFDFKR 453 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT- 555 Q P P N+ ++ A++ A + + + LF S RA++ + Sbjct: 454 QAVFYAPEGLPAP---NDSEYTAQLTAAMVPVINAARGR-TFFLFTSHRALREAAAILRQ 509 Query: 556 DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF 615 L LLVQG+ R L++ R++ +VL+G SF EG+D++G+ LS V I K+ F Sbjct: 510 KLDYPLLVQGEAGRRELLDAFREK----GNAVLLGTSSFWEGIDVRGEALSCVIIDKLPF 565 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 PV E + F LP A L Q GRLIR G +V+ D RLL Sbjct: 566 GSPGDPVAAARIEHINRNGGNAFRDYQLPQAVLALRQGAGRLIRDPKDTGLLVVADPRLL 625 Query: 676 TKNYGKRLLDALPVFPIEQ 694 T++YGK +++LP + Sbjct: 626 TRSYGKLFVNSLPNMTRTR 644 >UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammaproteobacteria RepID=A5CX48_VESOH Length = 686 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 216/701 (30%), Positives = 366/701 (52%), Gaps = 30/701 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L+ LK +I +K L+E + FI R Q +MIA+++KTL+GE L +EAPTG+G Sbjct: 2 LSNELKTKIHQSFKNLKENMNGFITRQAQNKMIAEISKTLSGEYKNSHNILCVEAPTGIG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRY 118 KT +YL+ I IA+ +K L++S+ANVALQ+Q++ KD+P ++ D ++T GR RY Sbjct: 62 KTFAYLLGSIHIAKANKKKLIISSANVALQEQLFFKDIPQAQQYCCVDFEYTLIKGRSRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC RNL + L + P + ++ +K+ + T KW+G D Sbjct: 122 VCIRNLINICEDNKNDNPLFESMPLFDKPPEEYPLEQLSKMLYNYSTKKWNGEIDDLIPT 181 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-SEAVL 237 + +W++++ ++ +C +NC +Y++C FF R++I +A+V+VANH LV+A + VL Sbjct: 182 TNHSIWQQIACNRFTCTVKNCEFYKDCAFFKTRQKITKADVIVANHDLVLADLSTGNTVL 241 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 PD + + DE HHL A ++ T+ + TK V+ + + + IP Sbjct: 242 PDVSKSIFIFDEAHHLNSKALSHFSLT---TSTEFIKTSVKQTKEVSETLCKISKQNIPN 298 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 + I + ++ + +L +L+ L N+Y+ F G + + + +I + + L E Sbjct: 299 INIKQ-IDNYITDLIQLLEQLKFNENIYL---------FNQGVIDEPIKQISRNILTLIE 348 Query: 358 MLRG---LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 +++ L + F +D +KT + + + + + + + + Sbjct: 349 IIQTKFTLLKEFWSDYLKKTVINKSIHGPINNMAGQCEQHLLSIIALFSSFLQIDEPNKI 408 Query: 415 PVTKWATRE--EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ 472 P ++W + + + + +S+ L+ L+W I+TSATL SL SF RL Sbjct: 409 PNSRWIKKSILTTSKRTNYLLNSAQTDISENLDHLIWSKASGAILTSATLTSLGSFERLN 468 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 + GL ++++ L SPF Q ++I +++ P+ +H E K+++S Sbjct: 469 KQLGLLRN-ENQYLRLPSPF-MFNQVDLIIAKLKASPTQVY--EHTQETTLQLLKRLDSD 524 Query: 533 KHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL 591 + G LVLF S + MQ + + L L +QG+ P+ +++ H G+ S++ GL Sbjct: 525 E--GSLVLFTSNKQMQIVANLIDKKLNCTLFIQGEYPKKNILKKHINLRKQGKGSIIFGL 582 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 SF+EG+DLKG+ L+ V I K+ F SP+ T +LKS NR PF SLP AS LI Sbjct: 583 DSFSEGIDLKGNNLTHVIITKLRFSVPTSPIDRTLATYLKSQNRNPFMEISLPDASLKLI 642 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 Q GRLIR+ G++ I+D RL++K YGK LL+ALP + I Sbjct: 643 QACGRLIRTETDVGKITIFDNRLISKFYGKLLLNALPNYNI 683 >UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY63_METI4 Length = 673 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 182/707 (25%), Positives = 295/707 (41%), Gaps = 79/707 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 A + L + + R Q +M ++ +L +E HL IEAPTG GK+L+YL+P Sbjct: 27 AAFFSPSGPLAQA-AHYEYRPQQEKMAEEIYSSLEKKE--HLIIEAPTGTGKSLAYLVPS 83 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTAL 127 + ++ + V+ST + LQDQ+ KD+PLLKK D GR Y CP+ L + Sbjct: 84 LLYCKQFSQRGVISTHTLNLQDQLLHKDIPLLKKTFFQDFSAVLLKGRQNYFCPKRLEKV 143 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 DL + + D G + D LW ++ Sbjct: 144 MK---HASDLFSHFEINDLMRIY-----------DWSVRTTTGDVEELDPLPSASLWSQI 189 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM--------ESEAVLPD 239 ++ C +R+C + C + R + ++++ + NHA + + + E LP Sbjct: 190 CSEPGLCNSRSCSHNPRCFYQKFREKSAQSDLTIVNHAFYFSLLGQSVDPEFQKETGLPF 249 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 + ++ DE H L VA L S +L+ F P T L Sbjct: 250 GE-SFVIFDEAHTLEKVASIQLGFSVSK------------YRLLNNLARLFNPSTRKGLL 296 Query: 300 I---PERLNAHCEELYELIASLNNILNLYMPAGQEAEHR-FAMGELPDEVLEICQRLAKL 355 + +L E YE SL L + +E R A LP + + +RL K Sbjct: 297 LCLKESKLLTKNIEAYEQAQSLFQALGRMLVQNSLSEQRILAPLSLPHPLPDTLERLVK- 355 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 ++ + +N ++ L ++ L+ L E + Sbjct: 356 -----EISSVLINLEDKEIKEEIENCLEKISLERRALLEFVEMKI-------------PE 397 Query: 416 VTKWATREE-REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEM 474 W + + ++ + V L+ LL+ +I+TSATL+ + FS Q+ Sbjct: 398 HVYWVELSDPSNPEGNVQLLAAPLEVGPLLQTLLYEKEISVIMTSATLQVASHFSYFQDR 457 Query: 475 SGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 GL R L SPF++ Q KI+IP+ +PS E A++ +++ Sbjct: 458 VGL----YSRTFQLQSPFDYGRQMKIIIPKNMPDPSQ---SPQYEEALAYWIERLVRYTK 510 Query: 535 LGMLVLFASGRAMQRFLDYV----TDLRLMLLVQ-GDQPRYRLVELHRKRVANGERSVLV 589 LVLF + + + + + T L VQ G PR++L+ L ++ + +VL Sbjct: 511 GSALVLFTNRKTLLTMTEALGQKLTALNFPFFVQDGKTPRHKLLNLFKE----AQHAVLF 566 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 G+ SF +G+D+ G+ L V I K+ F D P V + E L+ + F SLP A Sbjct: 567 GMDSFWQGIDVPGESLRNVIITKLPFSAPDHPQVQAKCEKLEQQGKNAFTHYSLPEAVLK 626 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPE 696 Q VGRLIRS G + I D R+L+K+YGK L+++P PIE E Sbjct: 627 FRQGVGRLIRSKEDKGIIAILDSRILSKSYGKVFLNSIPPAPIEIME 673 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 196/743 (26%), Positives = 305/743 (41%), Gaps = 64/743 (8%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + AL + A+ E I + R Q ++ V ++ +G HL +EA TG GK+L Sbjct: 237 IDPALVLSVLGSGGAISEAIAHYEHRPQQLELAEAVTRSF--NDGAHLLMEAGTGTGKSL 294 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRGR 117 +YL+P A AR + + +ST + LQ+Q++ KD+P L+ + ++ GR Sbjct: 295 AYLVPAFAWARANGEKVAISTHTITLQEQLWEKDIPFLQSALAGTPLEGVEAALVKGRSN 354 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y+C R A + EE++ +L L + G R ++ Sbjct: 355 YICLRKWEEAAVGAD-------------FLTSPEERRFLIRLAAWLAETE-TGDRSELNL 400 Query: 178 A-IDDDLWRRLSTDKASCLNRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAMESEA 235 + ++ WR + ++ +CL C ++R C F ARR ++A+V+V NHAL+ A + + Sbjct: 401 SGEEERFWRTVQSETETCLGPKCKWFRSHCFAFRARRRARDAQVLVLNHALLFADIAAGN 460 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEM---SAEITAPWYRLQLDLFTKLVATCMEQFR- 291 + P L++DE HHL VA L + S +IT L L+ + Sbjct: 461 QVLPP-FRHLIIDEAHHLEAVATQNLGVNLESWDITGALLLLYRAPGQGLLPQLRRRLGR 519 Query: 292 --------PKTIPPLAIPERL-------NAHCEELYELIASLNNILNLYMPAGQEAEHRF 336 P +P + ++L A +EL+ L A L G R Sbjct: 520 GEAIPARPPVGLPSEDLIDKLVGLVQHCRAATDELFRLCADLVEARGRSEEEGGARALRL 579 Query: 337 AMGELPDEVLE-ICQRLAKLTEMLRGLAELFLNDLSEKTG-SHDIVRLHRLILQMNRALG 394 + E + Q A LR LA + L++ + + G Sbjct: 580 TDAVRTGPLWEALEQARANAVHRLRTLAAGLALLAEALELQDPPLADADALLVDIQKQNG 639 Query: 395 MFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPH 454 + +K L + G W +R +L + I V D L L+ + Sbjct: 640 ILIQSTKAIDRVLLEPAEGE--VTWIESAQRGDRLRVALRAAPINVGDILRADLFGRMRS 697 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV--ALDSPFNHCEQGKIVIPRMRVEPSID 512 +I+TSATL SF+ L+E GL DR L SPF + EQ +++P P Sbjct: 698 VIMTSATLTVGESFAHLKERLGLSRLPPDRLREGVLSSPFAYREQALLLVPEDLPNPKEG 757 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-----LRLMLLVQGDQ 567 + Q + F Q LVLF S R +++ + D L+L D Sbjct: 758 DFTQAAVDFLRRFLIQA----GGRTLVLFTSHRQLRQVYQALKDDLEAEGLLLLGQGLDG 813 Query: 568 PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 R RLV R GER+VL G SF EG+D+ G+ LS V + ++ F P D PV+ Sbjct: 814 SRSRLVAEFRA----GERTVLFGSASFWEGVDIPGEGLSAVVMVRLPFNPPDDPVMEARI 869 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL--TKNYGKRLLD 685 E L+ F SLP A Q GRLIR+ G G V++ D RL YG + L Sbjct: 870 EDLERRGLSSFAHLSLPQAVIRFKQGFGRLIRTRGDRGVVIVLDNRLSPRGSRYGLQFLR 929 Query: 686 ALPVFPIEQPEVPEGIVKKKEKT 708 +LP + + E I + Sbjct: 930 SLPGPAVFRGRTDEVINRAMAWL 952 >UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Q3_9BACT Length = 701 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 178/700 (25%), Positives = 294/700 (42%), Gaps = 78/700 (11%) Query: 9 AQIAAWYKALQEQIPD----FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 + A L++ + R Q +M +A L G +L IEAPTGVGK+ +Y Sbjct: 54 EEFFAPGGPLKQAAEYGGRPYEFRPQQLEMSTAIADALTA--GENLCIEAPTGVGKSFAY 111 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRN 123 L+P I A + VVST + LQ+Q+ KDLPLLK++ + K A GR Y+C R Sbjct: 112 LVPLIYRAVHSGRPAVVSTETINLQEQLIDKDLPLLKQLTGINFKAALAKGRHNYLCRRR 171 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L+ + A L ++T G DG RD D ++ + Sbjct: 172 FAMLSGEQRDTLLPAAGLAVDVTR------------LGKWMQRTTDGERDSIDFRLEPTV 219 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--------SEA 235 W + ++ +CL C ++R C ++ AR+ ++A++VVANHAL + A Sbjct: 220 WSMVCSEGINCLGPKCEFFRNCFYYKARQAWEDADIVVANHALFFTDLGMRLASGGNGAA 279 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 P +++DE H L D A + L + +V+T + P+ Sbjct: 280 GSLLPNYGAVLIDEAHTLEDNAAEHLGLHLSRIG------------IVSTLNRLYNPEAA 327 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQE--AEHRFAMGELPDEVLEICQRLA 353 L + + + EL ++A + + ++ A+HR E+ + RL+ Sbjct: 328 RGLLMRKGAD---PELRGIVADARDEAYGFFKHFEDFLADHRETALEI-QQPDRFPDRLS 383 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 L L +L+D+ + + ++ + + L + + Sbjct: 384 PHLLKLSKLLTDYLDDIDDASFRTELDA------------QLVRCREFLNGIDHFTHKTL 431 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 +A + + H + V+D L +L+ +++ SATL SF Sbjct: 432 PDAVYYAE----SDRNSISLHAAPLNVADILADVLFNQDFPVMLCSATLTVRRSFDYFVN 487 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 +G R + LDSPF +Q I I R +P DN +A+ F + + K Sbjct: 488 RTGF---CNGRTLLLDSPFG-SDQAHIYISRGMPDPKDDNFNAALADEIPRFVEVTQGK- 542 Query: 534 HLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVL 588 VLF S ++ D + + LL+QG+ R L+ ++ V SVL Sbjct: 543 ---AFVLFTSYGTLRYCADALRGYFQEKGWQLLIQGENLTRTGLLREFKEDV----NSVL 595 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 G SF G+D+ G+ LS V + K+ F P++ ++ + F SLP A Sbjct: 596 FGTDSFWTGVDVPGEALSNVIVTKLPFAVPSHPLIAARMARIERQGKSSFAEYSLPEAVL 655 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 Q GRLIRS G +V+ DKR+++KNYG+ LD+LP Sbjct: 656 KFRQGAGRLIRSRSDRGIIVLLDKRVISKNYGRIFLDSLP 695 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 167/729 (22%), Positives = 297/729 (40%), Gaps = 50/729 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L A + L + +P + R Q++MI V + L E ++L +EA TGVGK+L Sbjct: 238 LAEDEVAVLVGKDGPLADVVPGYEYRPQQQEMIRLVTRAL--NEEKYLLMEAGTGVGKSL 295 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCP 121 +YLIP + + ++ ++V+T + LQ+Q++ KD+PL K+ K + GR Y+C Sbjct: 296 AYLIPSVLWSCLNRQRVLVATRTINLQEQLWHKDIPLAAKVTGRPFKASLVKGRQNYICL 355 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R ++ P Q F LT GD I ++ Sbjct: 356 RRWFSVLE-NPHQPQEAGFFARVLT-------WLTVTQTGDKSELNV--------IPAEE 399 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK 241 D W + + C+ C Y + C A+RE +E+ +++ NH+L+ + ++ E + P Sbjct: 400 DFWLSICGESDGCMGSRCRYLKYCFVNAAKREAEESNLIITNHSLLFSDVKVENRIL-PA 458 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVATCM----EQFRPKTI 295 L++DE HHL + A L W +L E++ Sbjct: 459 YEALIIDEAHHLEESATVHLGRQVTQGALNRWLSAAGKALFRLAEKVPPEDVEKWSETIK 518 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP-----DEVLEICQ 350 + + ++ + L + L+ R + ++ + VLE Sbjct: 519 DSREVLLEAQGNVHFFFQQLGELASALSNDEGDSGRITLRLSNEKMLANTSYNAVLECGT 578 Query: 351 RLAKLTEMLRGLAELFLNDLSEKTGSHDI-VRLHRLILQMNRALGMFEAQSKLWRLASLA 409 R +L L G L + ++ R + Q+ + Q+ + L + Sbjct: 579 RCIELFLSLNGKIGYIAKVLEMWGITEEVWAEAARDLFQIYNS-----GQTIIDDLQFIL 633 Query: 410 QSSGAPVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 + WA E R G + + + V L +++ +I +SAT+ +F Sbjct: 634 EGREQGFVYWAEFEYSRRGFKNYALYAAPVNVGTVLYEQFFKNRGTVIFSSATISVNGTF 693 Query: 469 SRLQEMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 + +GL ++ + DSPF Q + I EE ++ + Sbjct: 694 DHFIDRNGLNNFPPEKIIKASFDSPFAFERQALLCICHDLPVQGAVAEEVYLDNLEEAIL 753 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVELHRKRVA 581 K +E+ LVLF S + ++ + + +L G D R L+E + Sbjct: 754 KLLEAV-GGRTLVLFTSHKVLRETYRRLKPRMEARGICILGHGIDGNRLNLLEEFK---- 808 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 + ++VL G SF EG+D+ G+ LS V + K+ F PV+ E L R F Sbjct: 809 STAQTVLFGASSFWEGVDVPGEALSCVIMVKLPFVSPSVPVIEARLEDLARRKRDGFRDL 868 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 S+P A Q GRLIRS G V++ D+R+L+++YG+R L++LP+ + ++ + Sbjct: 869 SVPQAVIRFKQGFGRLIRSGSDRGCVIVLDRRILSRSYGRRFLNSLPLKKHFRGDIETIV 928 Query: 702 VKKKEKTKS 710 K + K Sbjct: 929 RKISDWMKE 937 >UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae RepID=B2SSY1_XANOP Length = 710 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 227/703 (32%), Positives = 331/703 (47%), Gaps = 30/703 (4%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 +LT +KA I Y LQ P F R Q QMI V++ LA G EAPTGVGK+ Sbjct: 19 SLTDPIKASIRDAYARLQANTPGFATRRAQSQMIGLVSRALATS-GGIGIAEAPTGVGKS 77 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVC 120 L YL G+ IA +K LV+ST VALQ Q+ +D+P LK + A GR RY+C Sbjct: 78 LGYLTAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKATGLEASVALAKGRTRYLC 137 Query: 121 PRN---LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 RN L S +D A D L+P + + KR AK W+G D Sbjct: 138 TRNAAELEGDTSQNAMFEDEQALYDRPLSPVDADLAKRLAKAYA---ARTWNGDLDDAPE 194 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM------AAM 231 + L R++T + C R C Y +CP AR +++EA++VV NHAL++ A Sbjct: 195 QVSVPLRMRITTPASGCAGRRCSYAAQCPVLKARTDVREAQIVVTNHALLLSSLSLGDAE 254 Query: 232 ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 + ++ P ++LLVLDEGHH+ VA D + + R L+A Sbjct: 255 NGQPLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTGRMQI--LIAAAYRAVD 312 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE--HRFAMGELPDEVLEIC 349 + L E + L A ++ ++ P E + R A G+LP + Sbjct: 313 KDKLGNLLPNEAIEVAARVSRLLKAFHADVERVWKPEPGERDPLWRAANGKLPPQWGPAI 372 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 + L + T L + +++ G D L + AL M E Q LW Sbjct: 373 EELGEETRALFNWVHAAHSAIAK--GKQDDSAREGLQRSLGLALEMAEQQHNLWSGWRRE 430 Query: 410 QSSG-APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 G P+ +W T L HC + + L ++W + +++TSATL F Sbjct: 431 DKEGQPPMARWITLSRDG---DLICHCSPVSAAQVLRTMIWNEVDSVVMTSATLTGGGDF 487 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 +GL + A +L SPF+ Q ++++P V P D+ E H E+A + ++ Sbjct: 488 QSFAIDNGLPDHA--EMASLASPFDLPNQAELIVPNFPVTP--DDREGHPKEVANYLVRE 543 Query: 529 VESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 ++ G +VLF S M++ D + R +LVQG+ + +L+ H +R+A GE SV Sbjct: 544 LDWTA-KGSIVLFTSRWKMEKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIAAGEGSV 602 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L GL SF EGLDL G+ + V I ++ F P T EWL+S F + ++P A Sbjct: 603 LFGLNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTSTLSEWLESRGHNAFNLIAIPHAL 662 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 L Q GRLIRS G V+I D RLLT+ YGKR++DA+P F Sbjct: 663 RTLTQFSGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDAMPPF 705 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 176/735 (23%), Positives = 289/735 (39%), Gaps = 69/735 (9%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 + AL + R Q +M VA T +G L EA TG GK L+YL+P Sbjct: 239 FFSPDGALGRAFAGYEQRDQQVRMSEAVADTF--NQGGALIAEAGTGTGKGLAYLVPAAL 296 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD------LKFTAAFGRGRYVCPRNL 124 A + +V+ST + LQDQ++ KD+P L++++ + GR Y+C + Sbjct: 297 HAARRGERVVISTNTINLQDQLFFKDIPALQQVMSNGADEAPFTAALLKGRSNYLCLKRY 356 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL- 183 L + D + + K++ L T + G R + ++ Sbjct: 357 KDLRRDQRLMSD---------------DVRALLKVQLWLPTTE-SGDRAELPLHEGENAS 400 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL 243 W R+S C C ++ C FF AR++ + A +V+ NHAL+MA + E + P Sbjct: 401 WNRMSAAWEQCTGPRCSEFQRCFFFKARKQAEAAHLVIVNHALLMADLAVENDVIPP-YD 459 Query: 244 LLVLDEGHHLPDVARDALEMSAE-------ITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 L++DE H+L DVA D L + + + + Q + L++ FR Sbjct: 460 YLIIDEAHNLEDVATDQLSFNVDREGLLAFLDDIFTEGQAQVVGGLLSELPNHFRESM-A 518 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPA-----GQEAEHRFAMGEL--------PD 343 +R +A + L +A + + +EAE L Sbjct: 519 TRTDIDRADAIADTLRPAVARARDAVYGCFNVLMTFIKREAELTAYDSRLRITDSLRRKP 578 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW 403 E+ + L+ L + E + D L L + A Sbjct: 579 SWAEVERAWDALSVALHAVGEGLGRLETLLIDLKDAELLEYDALMLRVQALRRYATDVRV 638 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 + + W T + L + V+D L L+ + I+TSATL Sbjct: 639 NIGHILTGGAEEKVTWLTHDRMRDT--LTLSAAPLSVADVLRTNLFEAKTATILTSATLS 696 Query: 464 SLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 +F+ ++E GL + LDSPF++ Q + IP+ EP+ + ++ + + Sbjct: 697 VGGNFAFIRERIGLDHA---EELTLDSPFDYTRQALLYIPQDIPEPNQNGYQRALEQAII 753 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQG-DQPRYRLVELHRK 578 + MLVLF + A+++ + + D + +L QG D R L+E Sbjct: 754 DLAR----ATGGRMLVLFTATNALRQTYRAIQEPLEDAGIAVLGQGIDGSRRSLLE---- 805 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 R +VL+G SF EG+D+ GD LS + I K+ F P+ E PF Sbjct: 806 RFKEFPGTVLLGTSSFWEGVDVVGDALSVLVIAKLPFSVPTDPIFAARSEQFD----DPF 861 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 ++P + Q GRLIRS G V + D+RLLTK YG+ L++LP + + Sbjct: 862 NQYAVPQSILRFKQGFGRLIRSREDRGVVAVLDRRLLTKKYGQMFLESLPHTTVRSGPLQ 921 Query: 699 EGIVKKKEKTKSPRR 713 K Sbjct: 922 RLPDLAKRFLAVGNG 936 >UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4_ACISJ Length = 758 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 221/726 (30%), Positives = 346/726 (47%), Gaps = 48/726 (6%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL------------AIEAPT 56 AQ ++A+ + F R QR+M VA+T + + L ++A T Sbjct: 37 AQALQSFEAVVQSTAGFRVREGQRRMAEQVAQTFSQAQLGKLEDDDALPQRAIAVVQAGT 96 Query: 57 GVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGR 115 GVGK+L+Y +P IA+A +++STA VALQ+Q+ KDLP L ++ +F A GR Sbjct: 97 GVGKSLAYSVPAIAMALARGTRVLISTATVALQEQLVHKDLPALAARMEQPFQFALAKGR 156 Query: 116 GRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKR--------------CAKLKG 161 GRYVC L LA L D+ ++E ++R A + Sbjct: 157 GRYVCKLKLERLAGGGAAGPGGDGDLPDDDLFADEEAEQRGKRPRHESEARMKFYASMAD 216 Query: 162 DLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVV 221 L T +WDG RD + + W ++ + +SC ++C + +C ++ R+++ A+V+V Sbjct: 217 ALATSEWDGDRDTLATPPEPEAWSPVAAEASSCTGKHCPVFNQCTYYERRKQLVAAQVIV 276 Query: 222 ANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK 281 ANH L+++++ + +LP+ N LLV+DE HHLP A D A+++ + +L Sbjct: 277 ANHDLLLSSLGAR-LLPELDNCLLVIDEAHHLPATALDQFACEADLSRLTWIDRLASRAL 335 Query: 282 LVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL-NNILNLYMPAGQE------AEH 334 + +E IP A RL A ++ L+ + L +P ++ Sbjct: 336 RIGQLVEVEEIADIPNHA--ARLRAALQDAARLVMDVYGEQLRAPVPGRRQFASSLPTRA 393 Query: 335 RFAMGELPDEVLEICQRLAKLTE----MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMN 390 R A G LP+ ++E + A E LR +++ +++ +K + RL +L Q+ Sbjct: 394 RVAGGVLPEALVEPFSQAAHHAEGFLNALRAISKALRSEMRDKP--DEARRLSQLYAQIG 451 Query: 391 RALGMFEAQSKLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 EA +L GA P KW T E + + H + + L LW Sbjct: 452 VLAPRLEAVHAAAQLLLQDAPEGAVPAAKWFTLEVEGDFIVVRAHASPVLPGNTLRNHLW 511 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 ++ ++TSATL S F SGL +A+ SPF++ QG +V R EP Sbjct: 512 SAVRGAVLTSATLTSCGQFDFFLRESGLFGDEAVTTLAVPSPFDYALQGTLVATETRAEP 571 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQP 568 + + AEM + + G LVLF S M++ +D + T +R +LVQ P Sbjct: 572 R--DAQAFTAEMVDALLSDLALVE-AGALVLFTSREQMRQAVDMLPTAMRSAVLVQNTLP 628 Query: 569 RYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGE 628 R +L+ HR+RVA G+ S++ G+QSF EGLDL G L + I K+ F P D PV E Sbjct: 629 RPQLLARHRERVAEGQPSIIFGMQSFGEGLDLPGRLCESLFITKLPFAPPDDPVGEARAE 688 Query: 629 WLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 WL+ R PF +P+ + L Q VGR IR+ V YDKRL+ YG+RLL LP Sbjct: 689 WLRGAGRDPFSELVVPATAIRLAQWVGRAIRTEEDRAHVYCYDKRLVRTGYGQRLLQGLP 748 Query: 689 VFPIEQ 694 F + + Sbjct: 749 PFALAR 754 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 180/714 (25%), Positives = 310/714 (43%), Gaps = 53/714 (7%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 + L+ ++ + R Q QM V ++L G H+ IEA TG GK+ +YLIPG+ Sbjct: 240 FSSGGILENKLKSYESRLGQLQMAKAVGESLTGST--HIVIEAGTGTGKSYAYLIPGLWW 297 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALAST 130 +++ K +VV+T + LQ+QI+ KDLPLL +++P + G+ Y+C + + Sbjct: 298 SKKTGKKVVVATHTIPLQEQIFKKDLPLLAQVLPFSFRGALLKGKSNYICLKRWSFTLG- 356 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 + EL P + + T W ++ + I + LW L+ + Sbjct: 357 ----------VTAELAPGERLALLSVMVWLRETTTGDW---QEVSQIPSLNKLWGSLNCE 403 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG 250 + SC+ C + C +R+ +EA++++ NH+L+ + +++E + P+ L++DE Sbjct: 404 EESCIPGKCSHANRCYMLQSRKRAEEADLIIVNHSLLFSDIKTEKNIL-PEYHELIIDEA 462 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFT---------KLVATCMEQFRPKTI--PPLA 299 HHL A + L + L L + K A E+ + Sbjct: 463 HHLHQAALEQLGNEISLEQISRVLNLLSRSMAGSFYGNVKARAQVWERLLSVALWERFRG 522 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL-EICQRLAKLTEM 358 E+L C+ELY+ L G E +R + + + ++ L Sbjct: 523 YLEKLPEACDELYQQAEEL--FATFAQIVGNELSYRLTVHCHQESWWPTVAVQIENLLGR 580 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 L+ + +L L+ + D L +++ + E + + LA Q Sbjct: 581 LKIITDLLKAMLN-LLDAQDDEDSAALAHEISGRIRNLEEMRECFVLAQ--QVDQPTRVS 637 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W + R + + VS+ L+ L+ + ++TSAT+ NSF GL Sbjct: 638 WLEQSNR-----ILLKTSPVDVSNLLKEKLFAPLDCAVLTSATISIANSFQHFLREIGLD 692 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 E + +DSPF++ Q ++++ + V+ + E A F +V + L Sbjct: 693 ESTPS--LLVDSPFDYERQMQLLVVKDLVDVKH--CDLFNTEEVALFISEVTERMQGRTL 748 Query: 539 VLFASGRAMQRFL----DYVTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQS 593 VLF S R ++ Y+ + LL QG D R ++E N RSVL+G S Sbjct: 749 VLFTSHRFLREIHLPLSRYLGGSGIELLAQGIDGGRQAILEA----FLNNSRSVLLGASS 804 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D+ GD LS V + K+ F P + P++ E+L++ R PF LP A Q Sbjct: 805 FWEGIDIPGDALSCVILVKLPFGPPNRPLIAARSEYLEAQGRNPFYEFLLPEAVLRFKQG 864 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEK 707 GRLIRS G V++ D R++ K YG+ L +LPV + + + K Sbjct: 865 FGRLIRSKSDRGLVILCDGRVIHKRYGRHFLSSLPVKTHIRTSRSQILDKIDLW 918 >UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax=Parachlamydiaceae RepID=Q6MEU9_PARUW Length = 753 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 169/727 (23%), Positives = 298/727 (40%), Gaps = 82/727 (11%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L + F R Q+QM+ ++ + + IEA TG+GK+L+YLIP + A Sbjct: 24 GLLANSLKGFEFRPQQQQMMTNIIEAYNND--SIALIEAGTGIGKSLAYLIPALIWAARF 81 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCPRNLTALASTEPTQ 134 + V+ST + LQ+Q+ SKD+P L + K G Y+C R L + Sbjct: 82 NERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKLEDV------- 134 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 E++ + EE + K++ DG R A +W ++ + +C Sbjct: 135 -------QMEMSIVSSEEAQEIEKIEAWRQQ-TVDGSRSSLSFAPTHSVWEKVGAENEAC 186 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA---------VLPDPKNLLL 245 + C +Y++C FF ARR+ Q+A +++ NH L+ A + A +LP + + Sbjct: 187 SHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPTYRR--I 244 Query: 246 VLDEGHHLPDVARDALEMSA-------------EITAPWYRLQLDLFTKLVATCMEQFRP 292 +LDE HH+ D+A + +L + + + + P Sbjct: 245 ILDEAHHVEDIATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYNKTPP 304 Query: 293 KTIPP--LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP--DEVLEI 348 + I + + L A ++E I + ++ A + R E+ ++ L I Sbjct: 305 REISQIVMRLTIDLPALRHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQKLRI 364 Query: 349 CQR--------------LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHR----LILQMN 390 ++L + L+ L + +L + + RL + L + Sbjct: 365 LNEHMNHTKWKEEIHPSASQLIDSLKN-YRLNITNLEAELKLIENERLQEQTKSIRLDIQ 423 Query: 391 RALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR 450 E L L SS +W + + +++ + +S L ++ Sbjct: 424 GLANRLETSISLLNHFILPPSS-PNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFVFS 482 Query: 451 SIPHIIVTSATLRSLNSFSRLQEMSGLKEKA----GDRFVALDSPFNHCEQGKIVIPRMR 506 P +I+ SATL S F +++ GL +K DSPF++ +Q + +P Sbjct: 483 KFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPTDM 542 Query: 507 VEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLL 562 PS + E K +++ + VLF S +Q+ + ++ + +L Sbjct: 543 PPPSHPDFNWIAFE---NIWKAIQASRGQ-AFVLFTSYSMLQQCAEKLSARMHEHAYVLF 598 Query: 563 VQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 QG++ R L+ + +R++L G SF EG+D+ GD L V I K+ F P+ Sbjct: 599 KQGEEARQTLLH----KFKTTDRAILFGTDSFWEGVDVAGDALRCVIIVKLPFRVPTEPL 654 Query: 623 VITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR 682 + E + PF S+P A Q GRLIR+ G +V D RL+TK YGK+ Sbjct: 655 IQARTEAIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQ 714 Query: 683 LLDALPV 689 L++LP Sbjct: 715 FLNSLPA 721 >UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLQ3_SYNFM Length = 646 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 172/686 (25%), Positives = 270/686 (39%), Gaps = 69/686 (10%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 L E + F R Q +M V + L L +EA TG GKT +YL+P I Sbjct: 5 FGPDGLLAENVTHFEFRPSQLEMAEAVLEALGARSP--LVVEAGTGTGKTWAYLVPAIL- 61 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYVCPRNLTALAST 130 K VVST LQDQI +D+P LK+ + P L+ GRG Y+C R + Sbjct: 62 ---SGKRTVVSTGTKTLQDQILDQDIPFLKRTVYPKLRAVCLKGRGNYLCHRRFKDFS-- 116 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 + DE ++ ++ GD W + W + + Sbjct: 117 ----YQPTLWNKDEAKLWSRFQKWATRTRTGDRAEISW--------LPDQFHTWNEVCSA 164 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLLLVL 247 CL + C + C R E +A +VV NH L A + P+ ++ Sbjct: 165 GEHCLGQQCSDVQRCFVTRLRAEAAQAHLVVVNHHLFFADLALRDKADTGVLPEYDAVIF 224 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H L DV + +L +F+ +T + Sbjct: 225 DEAHQLEDVMGQYFGIQFNSYG---------LMELTRVLQREFKKETGASHRFHD----- 270 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 + + + LN +L+ ++ + ++ RF + ++ Q +L L LA + Sbjct: 271 ARRIVQQLEVLNRLLHRHLFEVRGSQGRFPL-DMSRMGKNFVQSCNQLIHALDELAPMIA 329 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 HR ++ A+ M AQ + W G Sbjct: 330 PAEDLPLSFE---AYHRRASDLSGAVRMLLAQ------------EDESLVYWYEV----G 370 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 Q L+ + I V R + +I+TSATL SF +++ G+ + + Sbjct: 371 QNALFLNATPIEVCSIFRRRVLTPNRPVILTSATLSVAGSFDFVRQSLGI--APDSKSIR 428 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 L SPF + EQ + IPR P+ + + IAE + ++ K L LF S R M Sbjct: 429 LPSPFAYAEQTMLYIPRRFPAPNEHDFCRQIAEQSV----EILLKTRGRALFLFTSYRNM 484 Query: 548 QRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + D L +LVQG +P+ L+ ++ + SVL SF +G+D+ G+ LS Sbjct: 485 NEVHQLLRDRLPYPILVQGQKPKRALLAEFKESI----GSVLFATSSFRQGIDVPGEALS 540 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 + I K+ F D P+ +++ + F +P A L Q VGRLIRS G Sbjct: 541 CLLIDKLPFEVPDDPLAAARMDFITRQGKSSFFGYQVPRAVIQLKQGVGRLIRSSSDRGL 600 Query: 667 VVIYDKRLLTKNYGKRLLDALPVFPI 692 +VI+D RLL KNYG+ L +LP + Sbjct: 601 IVIFDVRLLQKNYGQIFLKSLPPCRL 626 >UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A8_9GAMM Length = 692 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 207/698 (29%), Positives = 334/698 (47%), Gaps = 21/698 (3%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE-EGRHLAIEAPTGVGKTLSYLIPGI 69 +A ++ + + + DF PR Q+QM +A ++ + + R +EAPTGVGKTL+YL I Sbjct: 2 VATIFERIGQVVADFKPRPQQQQMSEFIAASMQKKAQQRVAVVEAPTGVGKTLAYLSGTI 61 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALA 128 A +K LV+STA V LQ Q+ KDLPL + ++F GR RYVCP L+ LA Sbjct: 62 EAAINNKKVLVISTATVNLQQQLIQKDLPLFSSALEHPIRFVQVKGRRRYVCPSKLSQLA 121 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + P QQ+L +DD+ +L + D +WDG RD ++ +LW+++S Sbjct: 122 TA-PEQQELGIDIDDKYKRVLH--MAHAKQLLSEWDQERWDGDRDSRSDKLEAELWQQIS 178 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM--AAMESEAVLPDPKNLLLV 246 TD C ++C +Y CP++ RRE+ A+V+VANH L++ A + VLP+P+ L V Sbjct: 179 TDSEGCAGKSCSFYLRCPYYKLRREMLSAQVIVANHDLILSDADLGGGLVLPNPEEALFV 238 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQ-----LDLFTKLVATCMEQFRPKTIPPLAIP 301 DE H+LP A D + + + L +A F Sbjct: 239 FDEAHNLPRKALDHAAKALNFVQLYQTTETADSVLKKIPSALAFRQHDFGYMLSELRRDL 298 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRG 361 + +H ++L E+I + ++ + F L + +L CQ L + + Sbjct: 299 PAVISHLQQL-EMILQSDGLVQDVLEKRISEPRIFWNSPLVNALLIPCQNLLQRANNIYK 357 Query: 362 LAELFLNDLSEKTGSHDIVRL--HRLILQMNRALGMFE-AQSKLWRLASLAQSSGAPVTK 418 + + E + L+ Q+ +F + Q P + Sbjct: 358 HYSVLAKWIKEGLEKTQLSNKVGEALLPQVGTVQNIFGYLIDFMGLFLEPDQEDRPPNVR 417 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W ++E+ Q L H + + L+R LW +++TSATLR + F R + GL Sbjct: 418 WLSQEQFAKQQTLVIHAGPMTAAYFLDRSLWTRAYSVVLTSATLRGMGLFHRFRMDCGLH 477 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + F+A+ SPFN+ +Q + +P M+ P+ +Q E+ ++ + L Sbjct: 478 RFSEQHFLAVPSPFNYSDQATLNLPHMQFLPNEQQ-QQWRQEVVKQLASIIDVDE--ATL 534 Query: 539 VLFASGRAMQRFLDYV-TDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAE 596 VLF S M+ + L +L+QGD +V+ H +++ G+ S++ G+ FAE Sbjct: 535 VLFTSREVMEAVYRQLPQRLTTKILIQGDTLSPKNMVQRHIRQIEAGKGSIIFGMDRFAE 594 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+DL G+L + V I K+ FP P+ + EW+ PF SLP+ S LIQ GR Sbjct: 595 GIDLPGNLCTHVIITKLPFPVFTRPIEQAKQEWIIRKGGQPFTALSLPAVSVKLIQACGR 654 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 L+R G + I D+RLL+K YGK+LL LP + ++Q Sbjct: 655 LLRKETDTGRITILDRRLLSKGYGKQLLQHLPDYRLQQ 692 >UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID=A6GN94_9BURK Length = 654 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 188/709 (26%), Positives = 286/709 (40%), Gaps = 76/709 (10%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + A AL ++P F R Q +M V + E L +EA TG GKT +Y++P + Sbjct: 10 EAFAPGGALARRLPGFSARESQIEMAQAVGNAI--ETQSALVVEAGTGTGKTFAYVVPAL 67 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 + +++STA LQDQ+++KDLPL+++ + + GR YVC +L Sbjct: 68 L----SGRRVLLSTATKTLQDQLFNKDLPLVREALGVPVNVALLKGRQNYVCHFHLERAL 123 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 E + E K+K + D + D +W ++ Sbjct: 124 K--------------EARLPSPREVDHLQKVKIFAGRTQSGDRADCAGVPEDSAVWSWVT 169 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLL 245 ++K +CL C EC ARR+ +AEVVV NH L +A + E P ++ Sbjct: 170 SNKDNCLGGECPNASECFVNKARRDALDAEVVVVNHHLFLADLALKEEGIAELLPACDVI 229 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 V DE H LPD+A L + A C E R I Sbjct: 230 VFDEAHQLPDIATSLLGQAIS----------------TAQCQEFLRDVLIEGRTSSADAG 273 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 L + +L I + A A + V +C A L GL E+ Sbjct: 274 DWDSVLRPMELALKEIRRIVGTEIDSARFTHAQFLALNGVAAVC---ADFENRLEGLIEM 330 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 S VR + M RA + + A+ + +W + Sbjct: 331 I---------SPLSVRNESWVKLMGRASELCLRWQDWFSPATA--QADEQSVRWVSVSTH 379 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 Q F + VS+ +L + TSATL S GL E + Sbjct: 380 VVQ----FCDSPLDVSNAFAKLYAEQPKAWVFTSATLSIKESLQHFTLQVGLDEC---QQ 432 Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 + L SPF++ Q + +P P NE Q ++ + + + G+ L S R Sbjct: 433 LLLPSPFDYESQALLCVPDNLPFP---NEPQFSKKLCDAVWPLLHASEG-GVFFLCTSHR 488 Query: 546 AMQRFLDYVTD------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 A+++ +Y+ + L LLVQG+ R L++ R VLVG SF EG+D Sbjct: 489 AVKQVGEYLRERIEKDELDWSLLVQGEASRAELLDQFR----VLNNPVLVGAASFWEGVD 544 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 ++GD L V I K+ F P D PV + E +K+ F+ SLP A+ L Q GRLIR Sbjct: 545 IRGDGLRLVIIDKLPFAPPDDPVFQAKSELIKNRGGNAFQDLSLPDAAIALKQGAGRLIR 604 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ-PEVPEGIVKKKEK 707 WG ++I D+RL+ K YGK L +LP F + +V ++ K + Sbjct: 605 DETDWGVLLIGDRRLVEKGYGKLLWRSLPPFKRTRELKVAIEFMRDKRQ 653 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 181/712 (25%), Positives = 302/712 (42%), Gaps = 46/712 (6%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L + F R Q M+ VA+ LA EG+H +EA TG GK+L+YL+P IA Sbjct: 253 GPLAASLRGFEARPGQLAMVEAVAQALA--EGKHAMVEAGTGTGKSLAYLVPAALIAMAT 310 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQ 134 + +VVST ++LQDQI +D PLL++I D L+ GR YVC R + + A Sbjct: 311 GEPVVVSTHTLSLQDQIAERDFPLLRRIFGDELRLVVQKGRNNYVCLRKVRSEARL---- 366 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 E+ + L L + ++ LW R+ ++ SC Sbjct: 367 ---------STMATPVEDIQGIMALLVWLTETPDGTRETLSKSSVGPGLWARVQSESESC 417 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 +NR C +++ C +F ++ Q A ++V NH+LVM+ + S+ + PK LV+DE HHL Sbjct: 418 INRRCPFFQPCYYFRTKQAAQAAHLIVTNHSLVMSDLASDHRVL-PKYEHLVVDEAHHLE 476 Query: 255 DVARDALEMSAE---ITAPWYRLQLDLFT-KLVATCMEQFRPKTIPP--LAIPERLNAHC 308 + A + L + + A +RL D ++A + I L E Sbjct: 477 EQATNHLGFEVQSGVMAALAHRLVRDRGRAGVLAEVVRMLEELDIRGTTLESLEEGKEWV 536 Query: 309 EELYELIASLNNILNLYMPAGQ---EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 L + + + Y+PAGQ + + E E R + L+ L Sbjct: 537 GTLGAEVDAAFQAIAAYVPAGQSEARLDGAWRQTESFHAYREALDRTQAGVKRLQDLRAR 596 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 ++ + + R+ + L ++ WA + Sbjct: 597 LVDLVKSLPSDDHVGRVVDAAGFLGSWLDGIARMQEVL-------DEHPDDVTWAEVQTG 649 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 ++ + H + V+ L++ L+ + +++TSATL F GL+E A + Sbjct: 650 GSRVRVSVHRAPVDVARVLKQHLFDPLRSVVLTSATLAVNGEFGFAIRKLGLEEHAREDR 709 Query: 486 V---ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 V + SPF +Q ++ +P + + E+ + A E+ + MLVLF Sbjct: 710 VIARTVPSPFAMDKQARLFVPSDVPDIAAAPPEEAATWLTASITDLAEASRGR-MLVLFT 768 Query: 543 SGRAMQRFLDY----VTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 S ++ + + L LL Q D R L+E R SV+ G Q+F EG Sbjct: 769 SHALLRETARLARAPLAERGLSLLAQDLDGSRAALLEAFRAH----PESVMFGAQTFWEG 824 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +DL GD L+ + I ++ F P PV E L++ + F SLP A Q VGRL Sbjct: 825 IDLPGDQLTSLVIVRLPFAPPTHPVTAARLERLEASGQNAFRALSLPEAVVRFRQGVGRL 884 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTK 709 IR+ G +V++DKR++T+ YG ++P + + + ++ + Sbjct: 885 IRTQQDRGVIVVFDKRIVTQRYGSMFWKSIPGLRPRVVPERDLVAEVRKFLR 936 >UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L5B4_MAGSM Length = 660 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 175/689 (25%), Positives = 280/689 (40%), Gaps = 79/689 (11%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + AL + + + PRA Q +M VA+ + L +EA TG GKTL+Y++P + Sbjct: 13 ALFGPQSALAQCLESYEPRAAQVRMAELVARA--AHQQDLLIVEAGTGTGKTLAYMLPLL 70 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 A+ K +VVSTA ALQDQI KDLPLL++++ T GR Y+C LT + Sbjct: 71 AM----GKKVVVSTATKALQDQILEKDLPLLRQVVGSRFSATLLKGRANYLCLHRLTQMR 126 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + + EQ ++GD D K ++ D+W LS Sbjct: 127 ANRSL------LRHEARAWLEAIEQWSSTTVQGDRDELK--------ELPERLDIWPELS 172 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLL 245 T+ CL + C + C F AR +EA++VV NH L A + E P+ ++ Sbjct: 173 TNGDDCLGQECPDLQACYLFKARARAKEAQLVVVNHHLFFADLAVREGGFGEILPEYQVV 232 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 V DE H +PDV + +L C + + L + L Sbjct: 233 VFDEAHQIPDVVTRFFGLEVSNFQML---------ELARDCRREMDMVGMDDLDLLHHLT 283 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 EE L+ S + N+ ++A + E P L + + + L LAEL Sbjct: 284 V-IEERAALLRSAFPVENV-----RDALAPHHLQEEPGRALVMAE------QALHKLAEL 331 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 L G R +L + ++ + W R Sbjct: 332 LEPHLERSAGMASCGRRLEKLLIASGSIRTLD---------------DPARVYWYETRNR 376 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL---NSFSRLQEMSGLKEKAG 482 ++ + V ++ +L+ + + TSATL + F + GL + Sbjct: 377 G----VFLQASPLNVGLTMQEMLYPRVQCAVFTSATLATGQGEKGFHYFMQQLGLDAQVA 432 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ-HIAEMAAFFRKQVESKKHLGMLVLF 541 L F++ Q ++ +PR EP+ + E+ L LF Sbjct: 433 T-CEQLPPVFDYGTQARLYLPRRLPEPTAPGFTAMFMEELVDLLH-----ASRGRALCLF 486 Query: 542 ASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 S R M + + + + + VQG++P+ L+E+ + N E SVL+G +F EG+D+ Sbjct: 487 TSYRMMGQVQQLLPSRIPYPVYVQGERPKRALLEMFK----NHEASVLLGTSTFWEGVDI 542 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 G LS V I ++ F P D P+ + +S PF S+P A L Q GRL+R Sbjct: 543 PGAALSMVVIDRLPFTPPDDPISAARNRYCESEGGNPFMQLSVPQAILTLKQGAGRLLRR 602 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 G + + D R+ + YGKR ++ LP Sbjct: 603 RSDRGVIAVLDTRISRRPYGKRFINGLPP 631 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 164/705 (23%), Positives = 289/705 (40%), Gaps = 48/705 (6%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R Q +M+ V + + EE H+A+EA TG+GK+L+YL+P A EQK +++ST Sbjct: 254 GMEARPAQFEMMDHVREAFSVEE--HVALEAGTGIGKSLAYLVPAAFQAISEQKPVLIST 311 Query: 84 ANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 VAL+ Q+ +K++ L++++ ++ GR Y+ Q D + F Sbjct: 312 YTVALEHQLLNKEIKRLEQMLKTPVRTVLLKGRSHYLHLFKFEQSLKEPDRQYDAV-FAK 370 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYY 202 ++ E + GDLD G H W+R+ D ++ + Sbjct: 371 MQILVWLTETE------SGDLDELHLSGGGKH--------FWQRIKQDGWH-TDKKDPWK 415 Query: 203 RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALE 262 + A+ A++ V NHA++ A +E + + D +++DE H L AR+ + Sbjct: 416 SRDFYLYAKACAASADIAVTNHAMLCAELERDQSVFD-GFQYVIIDEAHRLEQAARETIG 474 Query: 263 MSAEITAPWYRLQL------DLFTKLVATCMEQFRPKT----IPPLAIPERLNAHCEELY 312 A Y + + ME++ K AI + L+A ++L+ Sbjct: 475 KRASYNQMKYMMARLGLYEQKQLFYKLEKVMEKYGLKASLHAFECDAILQALDAELDDLF 534 Query: 313 ELIAS----LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRL-AKLTEMLRGLAELFL 367 ++A N N Y + + VL +R+ A + E+ + L E Sbjct: 535 GMLAQKVLRANRETNGYQKIKLRIKKENWKQKAWQAVLLCTERIRASMKEISQALEERLS 594 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 LSEK + I +M L + + + Q+ G W + R Sbjct: 595 QLLSEKQMKEQALA---FIEEMYSFLEDWRLLRDNLAIFA-GQNGGDENVVWVEGDLRAL 650 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 L +C + + L++ + +++TSATL SF + +GL + V Sbjct: 651 PNSLVIYCQPVHAGEILQKAFFSRKKSVVLTSATLTVGGSFRYFLDETGL--AHTTKTVR 708 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 + SPF Q + +IP + + E +MA + E+ K M++LF S + Sbjct: 709 IPSPFRFDRQVQFIIPNDLPDIGSVSIEDFAEKMAGYLLAVAEATKGR-MMILFTSFDLL 767 Query: 548 QRFLDYVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 + + + M + QG R K +++L GL SF EG+D+ GD Sbjct: 768 KNVYHLMKESGMLEDYMFIAQGISSGSR--SRLTKSFQKFGKAILFGLSSFWEGVDIPGD 825 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS + + ++ F P D PV + ++ ++ + PF +LP A Q GRLIR+ Sbjct: 826 DLSCLVMARLPFLPPDEPVTEAKSDYFRAKGKNPFSAYALPEAVLRFKQGFGRLIRTRHD 885 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 G ++ D+R+ T YG +LP I + E + + Sbjct: 886 RGIFLVLDRRIETATYGPAFTKSLPPVRIRHLNLNETLEVIESWL 930 >UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-terminal n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87EB6 Length = 643 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 156/705 (22%), Positives = 284/705 (40%), Gaps = 84/705 (11%) Query: 7 LKAQIAAWY---KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +K+ I ++ L E I + R Q +M V + +E L +EA TG+GKT + Sbjct: 2 VKSTITEFFDVNGPLSEVIEGYQIRPSQVEMSQMVDAAIKNQEP--LVVEAGTGIGKTFA 59 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPR 122 YL P +A +++STA LQDQ+++KD+P +++ + +K GR YVC Sbjct: 60 YLAPALAA----GGKVIISTATKNLQDQLFNKDIPKIREALKIPIKVNLLKGRANYVCQL 115 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L N+E+ K+K D + + ++ Sbjct: 116 RLDDSIQGG--------------QFVNKEDGAYLEKIKQFSDHSNSGEISEVENVPEFST 161 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPD 239 +W +++ +CL + C + + C AR+E AEVV+ NH L A + + Sbjct: 162 IWPMVTSTADNCLGQGCEFAKSCFLLKARKEALNAEVVIVNHHLFFADFMLKDEDISEIL 221 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 PK ++ DE H +PD+A + Y +Q Sbjct: 222 PKADTVIFDEAHQVPDIASIFFGNNFSTNELIYLMQDAQL-------------------- 261 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + ++L + ++L ++ + + + + R ++ + + + ++L + Sbjct: 262 LYDKLGKNQKKLIDIASGVQEEIKHLRLEFGSSSERVTFEKITN-IDKFTEKLQSIHSSF 320 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 L ++F + I+ + IL+ +L+ + W Sbjct: 321 EQLGKIFSLLDDQSPEQKKIMERYEGILE---------------KLSHWLKEKNDQYVYW 365 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 + + F+ +++ R ++ I TSATL +SF Q + GL + Sbjct: 366 LDIFSKS----IQFNMTPFSIAEGFGRFRKQNKISWIFTSATLAVNDSFDFFQNLMGLSD 421 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + L+SPF+ + +P +P+ I + + + + + Sbjct: 422 ATSKK---LNSPFDFKNNACLYVPNNMPDPNSSIFNLTIIKKTYPLIQAAKGR----TFI 474 Query: 540 LFASGRAMQRFLDYVT------DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 L S ++M+ + D+ +L QG+ + L+E R + +VL+G S Sbjct: 475 LSTSLKSMREISALLKSEFEEHDINFPILTQGEDSKRTLIE----RFKSYGNAVLIGSMS 530 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D++G LS V I K+ F PV + LK+L PF LP A +L Q Sbjct: 531 FWEGIDVRGPSLSLVIIDKLPFHSPGDPVFESRINRLKALGENPFMSFQLPQAIISLKQG 590 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 GRLIR G ++I D R++ K YGKR+ +LP F + E+ Sbjct: 591 AGRLIRDEIDKGVLMICDPRIIDKPYGKRIWKSLPDFKRTRNELD 635 >UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Treponema RepID=Q73L75_TREDE Length = 709 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 157/704 (22%), Positives = 281/704 (39%), Gaps = 52/704 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L + + L + R PQ + + + E EA TGVGK+L Sbjct: 17 LDPKTVSSLLEEDGPLASFFERYEAREPQLALTKSICRCF--NEEAIGVFEAGTGVGKSL 74 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP----DLKFTAAFGRGRY 118 +YL+P + A++ +K +V+ST + LQ Q+ KD+ KKI+ D+K GR + Sbjct: 75 AYLLPAMMWAKQNKKRVVISTGTINLQQQLIEKDVLTAKKILGKGFQDMKACLVKGRHNF 134 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C R +T A +++ QEE + + T DG R D Sbjct: 135 LCLRRMTQ------------ALRENDFFTEGQEELDKIKEWA----TETKDGSRSDLDFM 178 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM------- 231 + +W + ++ +C C Y+ C +RE + + ++VANH ++ A + Sbjct: 179 PTEKVWSTVCSEPDNCPMNKCPYFSGCFVMKLKREAENSSILVANHHILFADLSVRAEGF 238 Query: 232 --ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 + AVLP N +++DE H + D A+ S++I+ Q++L + Sbjct: 239 GYQGTAVLPSYDN--IIIDEAHGIEDAAQSFF--SSDISRFALHKQINLLYRFRRGKQAG 294 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEIC 349 + E L AS N + + Q + + DE ++ Sbjct: 295 ILSGIVSISKKAELFTEIINLLEVAAASFNILEEQALQVLQTYQSKSLAQTSSDEKEKLL 354 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 + + + L N ++ G D R L + R L + + + L Sbjct: 355 SCVDNFFKNINNLNIKLENLINAADGEEDEEGYIREGLVVLRRLKKMASVMENF----LN 410 Query: 410 QSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 S W + + + F + ++ + R ++ + +I SATL+ + F+ Sbjct: 411 SSEFPNDVFWFEKIKTSQGEAVRFIQTPLNLAPIMRRSVFMPMATVICVSATLKIGDDFN 470 Query: 470 RLQEMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 +GL + + SPF + + IP P +N + + E + Sbjct: 471 FWLNRNGLYNFTEKKIIKDFFPSPFPYEKNVVFNIPTDMPMPDENNFQDAVNETVLALLE 530 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVT---DLRLMLLVQGDQPRYRLVELHRKRVANGE 584 + K L+LF S ++Q+ +YV D ++ +L QG+ R +L+ + V Sbjct: 531 ITQGK----TLILFTSYDSLQKTCEYVREHIDEKIKILKQGEADRMQLLYEFKDDVT--- 583 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 S L SF G+D+ G+ LS V + K+ F P+ + ++ F S+P Sbjct: 584 -SCLFATSSFWAGVDVPGESLSHVILVKLPFAVPTEPIFKARADLIEKSGGNSFMQLSVP 642 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 A Q GRL+RS+ G V + DKR+L K YG + ++P Sbjct: 643 EAVVQFRQGFGRLMRSNTDRGIVTVLDKRILVKRYGSIFIQSIP 686 >UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4LDA1_TOLAT Length = 672 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 172/691 (24%), Positives = 275/691 (39%), Gaps = 78/691 (11%) Query: 7 LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 L A L + IP F PR Q M V+K + E L +EA TG GKT +YL+ Sbjct: 16 LNNDYFAENGLLAKAIPGFAPRQAQVHMAEAVSKAI--ETAGRLLVEAGTGTGKTFAYLV 73 Query: 67 PGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLT 125 P + + K +++ST + ALQDQ+Y +DLP L + GR Y+C L Sbjct: 74 PAL----DSGKRVIISTGSKALQDQLYERDLPTLLLAMQYGKPVAQLKGRSNYLCTYRLA 129 Query: 126 ALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWR 185 L +Q++ D + Q + + GD + D + + Sbjct: 130 LL------EQEMHFLAADVFADLPKVRQFKARTVSGD--------VADIPGLQEQAPILP 175 Query: 186 RLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKN 242 +++ +CL R C Y C ARR+ +A+VVV NH L A M ++ P Sbjct: 176 FVTSTNDNCLGRECPDYENCFLVKARRKALDAQVVVINHHLFFADMSVKDTGFGELLPDA 235 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITA-PWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 + + DE H LPD+A S +L L +L A M Q Sbjct: 236 DVYIFDEAHQLPDIASQYFGESLSSRQLSDVADELRLAYRLEAKDMAQLGK-------AA 288 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRG 361 +RL C+ + + G + L ++ + L +L E ++ Sbjct: 289 DRLVQDCQAMR-------------LAFGVDPSRGNLRDVLVQPQMQ--RELQRLKESIKF 333 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWAT 421 ++ L +++ ++ L + + + + A W Sbjct: 334 CYDVCKLALGRGE------QINNCFERLAGFLTTVDHVTAI---------TEAGAAYWYE 378 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA 481 +R H + + ++++ + + R I TSATL F + G+ + Sbjct: 379 TTKR----HFTLNVTPLSIAERFAQEVMRVGCSWIFTSATLTVGEEFDYFSQRMGVGDAD 434 Query: 482 GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 LDSPF++ Q + +PR + SI +AE +QV G L Sbjct: 435 ---TCLLDSPFDYAHQSLLCVPRNLPDTSIYQRATQLAERLLPVIEQV----PGGCFFLC 487 Query: 542 ASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 S ++ + + D L +LVQGD + R++ +VLV SF EG+D+ Sbjct: 488 TSYNSVNQIAQVLRDKLDRTVLVQGDDNKQRIL----ADFVADGHAVLVATSSFWEGVDV 543 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 +G LS V I K+ F D P++ E + PF+ LP A L Q VGRLIR Sbjct: 544 RGAALSCVIIDKLPFTSPDEPLLKARMEDCRMQGGDPFQQLQLPEAVIVLKQGVGRLIRD 603 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 + G +++ D RL+ K YG L +LP P Sbjct: 604 YQDRGILILCDPRLVNKPYGAAFLKSLPPIP 634 >UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIX1_9BACT Length = 644 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 181/679 (26%), Positives = 290/679 (42%), Gaps = 71/679 (10%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ--KTLVV 81 DF R Q M + V L+ EG +L +EAPTGVGK+++YL+P + R + K +++ Sbjct: 15 DFERRPQQETMASKVYYALS--EGLNLCVEAPTGVGKSIAYLLPAVKWHRNTEQTKPIII 72 Query: 82 STANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 +T LQ+Q+ KD+P ++ ++ D GRG Y+C R + A A+ P F Sbjct: 73 TTHTKHLQEQLLKKDVPAVQLMLGEDFNAVIGMGRGNYICMRRMNAAAAGSPD------F 126 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 L DE K + +G + A+D+ W ++ ++ +CLN+ C Sbjct: 127 LPDESMIPEVFRIKSWSATSE-------NGCKTELPFAVDNGAWGTVNAEEGNCLNQRCP 179 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAME------SEAVLPDPKNLLLVLDEGHHLP 254 +++ C F +RR + A+V++ NHAL A + E P +++DE H + Sbjct: 180 HFKPCFFQKSRRSLYGADVIIVNHALFFADLAIKAETGDEQAGILPSASAIIVDECHTVE 239 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 DVA L + RL F + + + R ++++ Sbjct: 240 DVAAVHLGI---------RLSAGTFLYQLRRIYNKRSKRGAISTVSDNRGRHLAAKMHDE 290 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 + L+ ++P + HR +P+ LA+ L GL EL+ ++ Sbjct: 291 VRDFFQSLHAWLPD-ENKTHRIHEPVVPE------NPLAEGLTQLCGLLELYADEEEGNP 343 Query: 375 GSHDIVR-LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWF 433 R L R +L++ +L F ++S W + + HL Sbjct: 344 EKETEYRSLSRRLLKLTDSLSFF------------LRASSEEHVFWFEKSTK----HLSM 387 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFN 493 H I V+ L LL+RS ++ TSATL S + G+ E + LDSPF+ Sbjct: 388 HAAAIDVAPILNDLLFRSKTPVVTTSATLAVSEKLSYYRSRVGMSESLD---MILDSPFD 444 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 Q K+ + P ++ E+ +F G VLF S M+R D Sbjct: 445 FKNQMKVFAAQTLPSPKENDYEKEALTWLRYFIHM----STGGAFVLFTSFSQMKRIADA 500 Query: 554 VT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 V ++ L LLVQG+ L+ + SVL G +F G+D+ G+ L V Sbjct: 501 VRPFMNEMGLKLLVQGEAASSALL---LQAFKEDNNSVLFGTDTFWTGVDVPGESLRNVI 557 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I +I F D P++ E L+ F S+P A L Q +GRLIRS G VV+ Sbjct: 558 IMRIPFAVPDHPLIAARCEHLEKTGGRAFFDFSVPEAQLKLRQGIGRLIRSAKDRGIVVL 617 Query: 670 YDKRLLTKNYGKRLLDALP 688 D R+ NYG + L A+P Sbjct: 618 MDSRVSNTNYGAKFLRAMP 636 >UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteobacteria RepID=A9IIW5_BORPD Length = 693 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 195/721 (27%), Positives = 301/721 (41%), Gaps = 59/721 (8%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 ++ A L +P + PR Q ++ + + + + L EA TG+GKT +YL+P Sbjct: 7 SEFFAADGPLASALPGYAPRPAQVELAQAIGRAIT--DRATLVAEAGTGIGKTWAYLVPA 64 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAA-FGRGRYVCPRNLTAL 127 +++ST LQDQ+Y++DLP ++ + A GR YVC +L L Sbjct: 65 FVA----GGKVIISTGTRTLQDQLYTRDLPRVRAALAAPVTAALLKGRANYVCHYHLDRL 120 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 E + E++ Q + GD D + D D+W+R+ Sbjct: 121 QGDERALKS-----RTEISQLRQIQVFAGISKTGDRA--------DLGKVPEDADIWQRV 167 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLL 244 ++ + +CL ++C R+C ARR+ QEA+VVV NHAL MA + E P+ Sbjct: 168 TSTRENCLGQDCPRIRDCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLLPEADT 227 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPW-YRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 ++ DE H LPD A L S + L+ A ++ + Sbjct: 228 VIFDEAHQLPDTATRFLGSSVSTHQLLDFGRALEAAGLAYAREAAKWSDVSRQVETAARE 287 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEH---RFAMGELPDEVLEICQRLAKLTEMLR 360 L C L +L + PA +A R A+ + + ++ L R Sbjct: 288 LRLACAPLDQLPGRKATFEAIPEPAQFDAALAALRQAVDAATRALGAVAEKHPDLAAAAR 347 Query: 361 GLAELFLNDL-----SEKTGSHDIVRLHRLILQMNRAL--GMFEAQSKLWRLASLAQSSG 413 G AE+ L + + +HD R + + G Q+ L L++ A +G Sbjct: 348 GGAEISLRLARWALPAREGAAHDDEGWGRDTHALTQPADDGPAVPQAVLQGLSAAADYTG 407 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 P +W GQ H+ H + V+ R + I+TSATL F Sbjct: 408 -PAVRWVE----HGQHHVRLHSAPLSVAQAFSR-FRKPGQAWILTSATLSVHGDFHHYTS 461 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 GL + R+ +SPF++ QG + +PR EP + + + Sbjct: 462 QLGLNDARTGRW---ESPFDYTGQGLLFVPRDMPEPQSPRFAERFVQTLMPLLQ----AS 514 Query: 534 HLGMLVLFASGRAMQRFLDYVTD------LRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 G LVL + RA+ R + + LL QGD R L+E R E V Sbjct: 515 PGGTLVLCTTLRAVDRVAGLLAEAFEDHGHEWPLLKQGDATRRDLLE----RFCKLEHPV 570 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 LVG SF EG+DL GD+L+ V I K+ F P D PV+ + PF LP A+ Sbjct: 571 LVGSASFWEGIDLPGDVLTLVAIDKLPFAPPDDPVIEARLRACRVRGGNPFAEYQLPEAA 630 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEGIVKKK 705 +L Q GRLIR+ WG +++ D RL+ K YGKRL LP F + EV +++ Sbjct: 631 ISLKQGAGRLIRTESDWGVLMVGDARLVEKPYGKRLWRGLPPFSRTRDLNEVLAFYARRQ 690 Query: 706 E 706 + Sbjct: 691 Q 691 >UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G59_THICR Length = 636 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 181/694 (26%), Positives = 275/694 (39%), Gaps = 82/694 (11%) Query: 6 ALKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 +LK QI + L + D+ R Q +M VA+ + +E + L EA TG GKT Sbjct: 2 SLKIQIQSILGKDGQLSQNTSDYEVRHAQVEMAETVAEVI--DEDQTLLAEAGTGTGKTF 59 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCP 121 +YLIP + K ++VSTA LQDQ+ KD+PLL I GR Y+CP Sbjct: 60 AYLIPALL----SGKKVIVSTATKTLQDQLLRKDIPLLMDICNAKGTAKILKGRENYICP 115 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD-IAID 180 + L + E N +E R L D G + + + Sbjct: 116 QRLEIAETAE----------------QNTKEVWRKLSLIHDWQEKTLIGDKSELTTLDEN 159 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP-- 238 D +W R+ C C C + +++ +AE+++ NH L A + Sbjct: 160 DPIWSRVCARMEFCQANECTGDNGCFYPGVKQQATDAEILIVNHHLFCADLALREQGFGE 219 Query: 239 -DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 P+ + + DE H LPD+A L S R QLD + V ++ P+TI Sbjct: 220 ILPEADIYIFDEAHQLPDIAAQFLGFSVS------RFQLDELVRDVRLAYKKESPETI-- 271 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 EL + ++ + + ++ A + E R+ E E + L L Sbjct: 272 ------------ELSDQAKAVEDKIRIFNEALGKWEKRWTW-ESFSEAKTGHKTLEHLRN 318 Query: 358 MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 L LAE+ I +L+ + + FE Q + W ++S Sbjct: 319 QLSLLAEVIKP----------ITDRGKLLSALYKRTQEFEKQIETW-----LKASSENQI 363 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 +W Q + + V+ R I TSATL SF GL Sbjct: 364 RWVE----SSQARFKLNLTPLSVAAPFSRQRDALGGAWIFTSATLSVNQSFDYFAHRLGL 419 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 + R +SPF++ +Q I P +P + + A Sbjct: 420 E---SARTHQWESPFDYEQQAVIYHPIGLPDPKHPDYIKICLRAAWPLL----LASQGRA 472 Query: 538 LVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAE 596 +LF S +A+Q ++ L+VQGD P+ L+ R E ++L+G SF E Sbjct: 473 FLLFTSHKALQEAKVILSQHWEGTLMVQGDGPKTTLL----ARFKETENAILLGTSSFWE 528 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D+KGD L V I +I F P D PVV +LK F +P A+ L Q GR Sbjct: 529 GVDVKGDALKLVLIDRIPFIPPDDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGAGR 588 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 LIR G +++ D RL K YGK + ++ P F Sbjct: 589 LIRDSSDKGVLMLCDPRLTQKPYGKIITNSFPSF 622 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 180/699 (25%), Positives = 296/699 (42%), Gaps = 41/699 (5%) Query: 20 EQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 + P + PR Q +M+ V ++L ++ L +EA TG GK+L YL+P A E + + Sbjct: 250 QLFPGYEPRTGQLEMMRHVYQSL--DQETPLLVEAGTGTGKSLGYLVPAAHYAIEHETPI 307 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 +VST + LQ+Q++++DLPLL+++ + T GR Y+ R S + Sbjct: 308 IVSTHTIQLQEQLFARDLPLLRQLFEAPVDITLLKGRSNYMDLRKFEFFLSETEEPYNF- 366 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 GDL+ G +IAI + + +D S L R Sbjct: 367 ------TLAKAILLVWLTQTETGDLEEVSLPGGAAQGNIAIK----QLIQSDSQSQLGRF 416 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 +Y F A R ++A ++V NHAL+ + ++ EA + PK L+LDE H + +VA Sbjct: 417 DPWYSRDFFHHAVRRAKQATIIVTNHALLFSDIQYEAGVL-PKGCPLILDEAHQIEEVAS 475 Query: 259 DALEM---SAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 + + +L KL+ + + L + E L +L+ Sbjct: 476 HHFGLVFDGHSFDRIFRQLGFSSDKKLLTRLISLSDQYDLTEL-VEAHSETIDETLTKLL 534 Query: 316 ASLNNILNLYMPAGQEAEHRFAMGELP--------DEVLEICQRLAKLTEM-LRGLAELF 366 + +L + G E R E D+ + Q AK E+ LR L + Sbjct: 535 EEADGLLTIIQAYGLELASRKERREGRVTVRFKRLDQSMRAVQESAKRVELVLRRLRQAI 594 Query: 367 --LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 ++ L H R ++ + +G E + LA W Sbjct: 595 RAIHKLFHDQREHMSYRERSVVADLKTVIGQLEEVEQAIFETMLAPHDE--TVSWIETTA 652 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + +L + I +S++L R ++ I+TSATL N F +++ GL E R Sbjct: 653 KNRKLT-RIYTQPIDISNRLHREVFSK-RTCILTSATLTVSNKFQFIEQRLGLSELETRR 710 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 F+ + SPF + E+ +++IP D + +E+ A ++ MLVLF S Sbjct: 711 FI-VPSPFGYAEKVRLMIPTDLPL-LQDVPQATYSEVIADAIIRIAEVTEGRMLVLFTSN 768 Query: 545 RAMQRFLDYVT---DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 +++ D R LL QG R + K+ + +L G SF EG+D+ Sbjct: 769 EMLRQTHDATKMALPERFTLLSQGITQGSR--QRLMKQFKQLDACILFGTASFWEGVDVP 826 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD LS + I ++ F P D P+V E ++ + F SLP A Q GRLIR+ Sbjct: 827 GDDLSCLVIVRLPFAPPDQPIVQARSEQIEQQGKSSFFEYSLPQAIIRFKQGFGRLIRTT 886 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 G V ++D+R+ T YGKR + +LP P+ + E Sbjct: 887 NDRGVVFVFDRRIETTRYGKRFVTSLPNVPLLAKPLDEL 925 >UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7T8_GEMAT Length = 713 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 187/718 (26%), Positives = 303/718 (42%), Gaps = 76/718 (10%) Query: 15 YKALQEQIPD------FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 Y + + + + R QR M V T EG +EA TGVGK+L YL+P Sbjct: 6 YGLVAQAMRGMYGIRDYEDRPSQRAMATAVTTTF--NEGGVALLEAGTGVGKSLGYLVPA 63 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD--LKFTAAFGRGRYVCPRNLTA 126 + A + VVSTA + LQ+Q+ +KDLP L++ + D ++F G Y+C L A Sbjct: 64 LRWAAANGERTVVSTATITLQEQLVAKDLPFLQRALSDQPVRFALLKGWRNYLCLNRLAA 123 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 A DD ++ + + + + DG A ++W Sbjct: 124 AQGA------GAALFDDNVSDD--------VAMIAEWASRTKDGSLADLPTAPRGEVWDE 169 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---------ESEAVL 237 +S + C C +Y +C F AR+E A+VVV NH L+++ + E AVL Sbjct: 170 VSAEPDLCGRMKCEHYNDCFLFKARKEAAAADVVVVNHHLLLSDVAVRRQVQNWEDSAVL 229 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMS------AEITAPWYRLQLDLFTKLVATCMEQFR 291 P K LV+DEGHHL + A L S + + R L L A + Sbjct: 230 PAYKR--LVIDEGHHLEEAAGSHLGSSITRRALSRLFNRLERRGKGLLPTLAAKLSGKND 287 Query: 292 PKTIPPLAIPER--------LNAHCEELYELIASL-----NNILNLYMPAGQEAEHRFAM 338 ++ + + + L+EL+A++ +L L + R + Sbjct: 288 LLSVASMDLLREGLFSSVLTARDRTQLLFELLAAVLEQQGGGVLRLTESFQEHDLWRNGI 347 Query: 339 GELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA 398 G+ E+L +AK M++ E + L E L + ++ + Sbjct: 348 GDTLKELLNEIDAIAKGLAMVQTRLESDQSRLEE---------LSSTVNEIRGVTRRLQN 398 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREG--QLHLWFHCVGIRVSDQLERLLWRSIPHII 456 + + G V +W + + + +L HCV + ++ L L+ + + Sbjct: 399 AGDALMKGLMPPADGPAVVRWMEFQGKPTPHERNLAVHCVPLDLAPVLRDDLFGRVETAV 458 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGD-RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 VTSATL + F L+ GL R SPF++ Q +V+P P+ E Sbjct: 459 VTSATLSTDGGFQFLERRLGLAGSTSPVRAAIFPSPFDYPRQALLVVPTDLPAPNEQARE 518 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYR 571 H A + + G+ LF S R ++ +++ R LLV G++PR + Sbjct: 519 -HFAGVTRHLHDLAHAS-DGGLFGLFTSHRDVREMAEWMRGQGLSGRWPLLVHGEEPRDQ 576 Query: 572 LVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 L++ R+ R++L+G +F EG+D+ GD L + I K+ F P+V + E + Sbjct: 577 LLQRFRE----SGRAILLGTATFWEGIDVPGDALRGLLIAKLPFRVPTEPIVAAQCEAID 632 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 + F LP AS L Q GRLIR+ G VV+ D R++TK YG+ LL+ LP Sbjct: 633 ARGGNAFVEYMLPHASLRLKQGFGRLIRTATDAGVVVLSDPRVVTKRYGRALLNGLPP 690 >UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N856_9GAMM Length = 662 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 180/712 (25%), Positives = 287/712 (40%), Gaps = 56/712 (7%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 A +KA + A AL + + D+ PR Q+++ VA L+ + L EA TG GKT +Y Sbjct: 2 ADIKA-LFAADGALAQAVRDYQPRPGQQELAEAVADNLSDD--GILLAEAGTGTGKTFAY 58 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRN 123 L+P + K +VSTA LQ+QI++KDLPL++K++ + GR Y+C + Sbjct: 59 LLPLL----ASGKKGLVSTATRNLQEQIFTKDLPLVRKVLRSTARVALLKGRRNYLCHHH 114 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 +EP + A+ ++ D L T+I D + Sbjct: 115 YHQYLDSEPHTAEEKAWRR---------------AIERFFDKTADGDLVALTEIPEDAPV 159 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DP 240 R+++ +CL R+C ++ EC AR++ +EA+V + NH L++A ++ P Sbjct: 160 LARITSTAENCLGRDCAFFEECFVQQARQKAKEADVTIINHHLLLADFALKSEGFAEILP 219 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 V+DE HHLP A L RL ++ + L + Sbjct: 220 DIQAFVIDEAHHLPLTAIHFLG---------DRLSARQLLGFISDGEAAALAEAPDALEL 270 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 E L + +++ ++ + Q HR EL + L +L + Sbjct: 271 RETLRELKLQHSKILLAVRQPTETRLDEEQLFAHRAFWTEL-----QALAALFELLHIQL 325 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 + L+ G ++ + A K A P W Sbjct: 326 APQKARGKLLAHLDGRCQDLQKLLAAFLAEDRAALPAATEKTGNDAENNDKPPVPRAIWL 385 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 R H V + + + + S SATL F GL E Sbjct: 386 DVGPR----HYTLCSVPVNAAGRFASWIANSNASWAFLSATLAVNGKFDHFSRELGLSEY 441 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 R + L SPF+ Q + P +P N+ ++ + + +E + +L Sbjct: 442 ---RSIQLQSPFDFRHQALLYHPPGLPDP---NDARYNDALISAILPVLERSRGR-AFLL 494 Query: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 F S +A+ + D LLVQG + L+ R+ ER+VL+ SF EG+D+ Sbjct: 495 FTSYKALHAAERALRDTDYHLLVQGRAGKNILLADFRRH----ERAVLLATSSFWEGVDV 550 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 +GD L V I K+ F + PV L+ PF +LP A L Q VGRLIR Sbjct: 551 RGDRLVCVVIDKLPFAAPNDPVTRARHRLLEDKGLSPFMHDTLPQAIITLKQGVGRLIRD 610 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ-PEVPEGIVKKKEKTKSP 711 G +G +V+ D RL KNYG+ L++LP + EV + E TK+ Sbjct: 611 SGDYGVLVLADPRLTQKNYGQTFLNSLPPMSKTRKIEVIDRFFAYHETTKTA 662 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 176/727 (24%), Positives = 301/727 (41%), Gaps = 66/727 (9%) Query: 8 KAQIAAWYKALQEQIP--DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 K A + A +P + R Q +M+ V + L E +H IEA TG+GK+L+YL Sbjct: 235 KDASFAAFFAGPHTLPLDHYERRDGQWEMMKLVYEAL--ETSQHALIEAGTGIGKSLAYL 292 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 IP A E+QK +V+ST + LQ Q+ +D+P LK+++P L+ G+ Y+ Sbjct: 293 IPSAFFAYEQQKRVVISTHTLQLQQQLLERDIPFLKEVVPFPLRVAVLKGKRNYLSLDKF 352 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 A D++ L GD+D + W Sbjct: 353 IAFLQEHHQNYDVVLLKCQLLV-------WLTQTETGDMDELNAS--------SGARLFW 397 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL 244 L D+ + F+ A++ +EA +V+ NHA ++ + + L P Sbjct: 398 PLLVMDEEDNGGKYN------FFWRAKQRAEEAHIVITNHAFLLHDVTASTPLL-PDYEH 450 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWY---RLQLDLFTKLVATCMEQFRPK-------T 294 +++DE HHL +VA + + R+ +A M+ F + Sbjct: 451 MIMDEAHHLEEVASHYFGQQVDYVSIRLILTRIGKVNENGSLAKLMKLFAGRHWNADDHF 510 Query: 295 IPPLAIPERLNAHCEELYELI---------ASLNNILNLYMPAGQEAEHRFAMGELPDEV 345 + E L C+EL+ +I A + P + AM EL + Sbjct: 511 FRCGQLVEELQFECDELFRMIRRYALERKSAESGRCRYRFEPQKESGRQWSAMKEL---L 567 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRL 405 I +A L + + L F + E + S + +N+ + L Sbjct: 568 WRIRGHVANLVDETKQLQTFFSENNMESSISAQPYSYFSDVSSLNQIIDT---------L 618 Query: 406 ASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL 465 L +S V +W EE+ + I++ + L+ I++TSATL Sbjct: 619 YDLIESDDPMVVRWIEAEEKGAANATAVYSQPIQLDEFFAERLFMPKKSIVLTSATLTMN 678 Query: 466 NSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 SF+ + GL + + SPF++ EQ ++IP S + E++ A + A Sbjct: 679 GSFAYIISRFGLSDFYP-ICQTIPSPFSYKEQAMLMIPSDFPPISSVSLEEYAA-VVAEG 736 Query: 526 RKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQGDQPRYRLVELHRKRVA 581 Q+ + MLVLF S ++ + + + +L+ QG Q K Sbjct: 737 VAQIAKRIKGKMLVLFTSYELLKLTANAMKMEERNEDYVLIAQGVQSGSAT--KLTKAFQ 794 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 ++++L G +F EG+DL GD LS V I ++ F P D PV+ + E++++ PF Sbjct: 795 QFDQAILFGTSNFWEGVDLPGDELSVVVIVRLPFAPPDDPVIEAKSEYIRAKGGNPFYEL 854 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 SLP A Q GRLIR+ G + ++D+RL + +YGK L++LP I + + + + Sbjct: 855 SLPEAVLRFKQGFGRLIRTKKDKGAIFVFDRRLTSASYGKYFLNSLPSLTICEESLDQLL 914 Query: 702 VKKKEKT 708 K ++ Sbjct: 915 QKLEKWL 921 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 170/713 (23%), Positives = 297/713 (41%), Gaps = 54/713 (7%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 ++ A + P+F R+ Q M +VA + ++ L +EA TGVGK+ +YL+P I Sbjct: 257 EVFAEDGIFASKFPNFEFRSGQMTMAEEVADAFSKQD--FLVVEAGTGVGKSFAYLVPAI 314 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 + + ++VST LQ+Q++ KDLP LKKI+P + GR Y+C R L Sbjct: 315 DFSNRNKSKVIVSTNTKNLQEQLFFKDLPQLKKILPLPFQAVLVKGRENYICERRWQELL 374 Query: 129 STEP---TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWR 185 + T D L+ + + GD+ D LW Sbjct: 375 QEQTRGITSYDAYGLLNLLV--------WKEHTNTGDVSE------NSSFDKNRFGVLWH 420 Query: 186 RLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLL 245 ++ +D+ C R C ++ C R+ I+ A +VVANH+L++A + + + L Sbjct: 421 KICSDRYLCGGRKCPLFQSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTLG-EYQYL 479 Query: 246 VLDEGHHLPDVARDALEMSAE------ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 V+DE H+L A L + + ++ ++ + + Sbjct: 480 VIDEAHNLMSAASKNLGFTLSYVDLNSLFNQLVYTSRKYSGGFLSQIIQTLQKSMLTTDQ 539 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQE-----AEHRFAMGELPDEVLEICQRLAK 354 + C +L I S ++ ++ + + + +I L + Sbjct: 540 KTH-IETLCTKLTGEIDSQRQVITKLFSLAEDHCVEAKSYNKLRIKDINAFEDIYTLLKE 598 Query: 355 LTEMLRGLAELF--LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 L+ + + + L+++ S+ + L L + L + ++ + L Sbjct: 599 LSLAFKDIMKDLTALDNVFSTLNSNQVKDLDVLKDNLKGYLSRYMETEEI--ILQLLNPD 656 Query: 413 GAPVTKWATREEREGQL--HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 W + + F + V + L RLL+++IP II TSATL SF Sbjct: 657 LDNYALWIENDPNSERNVPISTFCYAPVEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKF 716 Query: 471 LQEMSGLK--EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 SGL + R ++SPF++ +Q ++I E +++ A +Q Sbjct: 717 FLNQSGLSLVTEKNVRQSIVESPFDYDKQSLLLIGSFLPEY----KDKFFQSQALGCLEQ 772 Query: 529 VESKKHLGMLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQ-PRYRLVELHRKRVANG 583 + + ++G + LF S + + D+++D L QG R L++ +K Sbjct: 773 ILTTTNVGTMALFTSYKDLDAVYDHLSDTLFHLNRPFFAQGKGVSRNSLLDEFKK----S 828 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 + +VL+G SF EG+D++GD LS + ++KI F P+V + L+ N+ F L Sbjct: 829 KNAVLLGTSSFWEGVDIQGDSLSLLILYKIPFQVPSEPLVEALIDKLERENKDSFMHLML 888 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPE 696 P+A L Q GRLIRS G V+I D R+ K YG LP IE + Sbjct: 889 PNALLRLRQGFGRLIRSKTDRGVVLIMDSRVSKKKYGIYFKQILPGRCIELKD 941 >UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1E9_NATTJ Length = 636 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 163/693 (23%), Positives = 302/693 (43%), Gaps = 86/693 (12%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 ++ ++ LQ I F R Q M V K L ++G H +EA TG GK+L+YL+P Sbjct: 6 EELDQIWEDLQHHIDKFETREGQIDMSLGVLKAL--QDGGHFVVEAGTGTGKSLAYLLPA 63 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTAL 127 + +A++E +V+STA +ALQ+Q+ KD+PL++KII L+ GR Y+C + Sbjct: 64 VQLAQDEF-RMVISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQH 122 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + + N +++ + + +T D ++ ++W ++ Sbjct: 123 FG--------------QTSFVNSIQERELIEWVNETETG------DRNELQTMPEIWEKV 162 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-------ESEAVLPDP 240 + SCL C +Y EC R+ + AE++V NH L + + S ++ PD Sbjct: 163 CSQSESCLAMRCQFYSECFVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDY 222 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 + ++ DE HH+PD A +L + Y + LF ++ + ++F+ + + + Sbjct: 223 EG--VIFDEAHHIPDTATKSLGREVK-----YSRVIKLFKEVTSYLKQKFQAQ----VNL 271 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 + A + + ++ +E+++ + + E ++L+KL + + Sbjct: 272 VQEAEASAVKAFNKLSDF-----------RESDYLLRELDSFISLKEFRKKLSKLAQHVE 320 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 A L E L + + L + W Sbjct: 321 ECA------LEEMDRPEQPRMLASRLNKTKLD------------LDLILDLEEEDYISWV 362 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 ++ + + + V QL L+ ++ II+TSATL F+ + GL + Sbjct: 363 NQQSSD----ISLSTNPVFVHKQLREFLFDNVDRIIMTSATLSINGKFAYFKNRVGLSQD 418 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 A + ++SPFN+ EQ I IP+ EP ++ ++A + +++ LVL Sbjct: 419 A--QTYQIESPFNYQEQSNIYIPKNFPEPR---SGEYNRQLADTIEQIIDAA-GGRTLVL 472 Query: 541 FASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 F S + + + D + + QG P+ +++ N SVL+ SF EG+D Sbjct: 473 FTSYSTLNSIYNQLKDKVPYEIYCQGIHPKNKILSW----FQNDASSVLMATNSFREGVD 528 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 + G L V + K+ F D+P++ + E L+ + F LP A + Q GRLIR Sbjct: 529 VPGSSLQVVIMDKLPFAVPDNPLIKAKIEKLQQEGQNSFMNYQLPEAVLAVKQGFGRLIR 588 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 + G + D R+ TK+YG+ +++LP P+ Sbjct: 589 HNNDCGIFALLDPRVFTKSYGRHFINSLPNAPL 621 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 160/689 (23%), Positives = 267/689 (38%), Gaps = 64/689 (9%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F R Q+QM+ DV L + +H IEA TGVGKT++YL+P + A ++Q+ +VVST Sbjct: 251 FEYREGQKQMMDDVNYAL--QTCQHALIEAGTGVGKTMAYLLPTVFYAVKQQQPIVVSTY 308 Query: 85 NVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 + LQ Q+ K+LP + +++P G+ Y+ R T D+ Sbjct: 309 TLQLQKQMIEKELPRVAQLVPFPFTTAVLKGKRNYMSVRKFARTLKHIDTNYDIALTKCQ 368 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 L GD+D W + +D + Sbjct: 369 LLV-------WLTETETGDVDELNLTAGGAL--------FWEDVHSDDTNE--------E 405 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEM 263 F A+ + + A V++ NH+ VM + ++ P L++DE HHL DVA Sbjct: 406 YDFFVRAKEKAKHAHVIITNHSFVMHDLTADEKWLPPYEQ-LIIDEAHHLEDVAAHFFGR 464 Query: 264 SAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILN 323 Y L+T++ M L E EL +L SL + + Sbjct: 465 HVS-----YEYIRLLWTRMNDIAMIHKMGALRSLLGDLEY------ELNQLFQSLRHYVL 513 Query: 324 LYMPAGQEAEHRF-AMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRL 382 +RF E E + L ++ ++ L+++ + E Sbjct: 514 RRQKGDGRIRYRFVPWKEYGKEWSGTIELLMRIMNDVQQLSQMINDIPKEDVKPFTTF-- 571 Query: 383 HRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSD 442 L L L S + +W + + + + ++ Sbjct: 572 ----------------IDTLRTLQHLLTSDDDDIVRWLEVDAKAAVNAVTVISQPLDLAH 615 Query: 443 QLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI 502 L+ +I+TSATL + FS + GL + + SPF++ +Q +++ Sbjct: 616 FFADQLFSRKRSVILTSATLTTNGRFSFIIARLGLDDFYPF-TRIIPSPFSYEKQAALMV 674 Query: 503 PRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT---DLRL 559 P EQ+ A + K MLVLF S +++ Y D + Sbjct: 675 PTDLPTFPSVTVEQYAEHAAQQVIRIARHTKGR-MLVLFTSYELLKQTYAYAKQFNDDQF 733 Query: 560 MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPID 619 +LL QG + E+++L G SF EG+DL G ++ V I ++ F P D Sbjct: 734 VLLAQGVSGGNA--AKLTRHFQQFEQAILFGTSSFWEGIDLPGSEVTCVVIVRLPFAPPD 791 Query: 620 SPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 PV+ + +++++ PF SLP A Q GRLIR+ G + ++D+RLLT +Y Sbjct: 792 DPVMEAKSDYIRAKGGNPFYDLSLPQAILRFKQGFGRLIRTKEDRGIIFVFDQRLLTASY 851 Query: 680 GKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 K L +LP + + E + E Sbjct: 852 SKYFLQSLPPIRVYHAPLSELLQHVNEWL 880 >UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR3_BURPP Length = 755 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 183/762 (24%), Positives = 285/762 (37%), Gaps = 119/762 (15%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE------------------------ 45 +I A L QI + RA Q +M VA + Sbjct: 45 EIFAANGLLARQIDGYRSRASQIEMSRAVAAAMEASGRAMPEPAMFEAQKRPARRLQGAA 104 Query: 46 -----------------EGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVAL 88 L +EA TG GKT +YL+P + ++VST L Sbjct: 105 DTAAEAAEGVEAGGLDGSENTLIVEAGTGTGKTYAYLVPAMLW----GGKVIVSTGTKHL 160 Query: 89 QDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTP 147 QDQ++ +D+P ++ + + GR Y+C L A E + Sbjct: 161 QDQLFQRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPS------RQETSY 214 Query: 148 NNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPF 207 + GD + +W +++ + +CL + C +Y++C Sbjct: 215 LQDIVRFAKITRTGDKAEL--------ASVPETAAVWSMVTSTRENCLGQECPHYKDCFV 266 Query: 208 FVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMS 264 ARRE Q+A++VV NH L A + ++ P ++ DE H LP+ A + Sbjct: 267 MQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGET 326 Query: 265 AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNL 324 T L+L VA + R + +L A+L Sbjct: 327 LSTTQF-----LELARDSVAEGLGHARETV---------------DWVKLGATLERAARD 366 Query: 325 YMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHR 384 A +E R ++G+L D+ + L L L LA + + I R Sbjct: 367 VRLAFKEDSVRLSIGQLADDH-PLFPALETLETELDALASALA---GQAERAESIGACLR 422 Query: 385 LILQMNRALGMF---------EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHC 435 ++ L + EA ++ +W QLH Sbjct: 423 RARELQGVLAGWTTPPTPTEREAADVASTDGKTERADPNEKVRWIEVFSHTVQLHE---- 478 Query: 436 VGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHC 495 + V+ + I TSATL F+ GL K R + L SPF++ Sbjct: 479 TPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNAK---RSMTLPSPFDYP 535 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 QG + +PR +PS + + A + G+ +L + RA+ R + Sbjct: 536 TQGLLYVPRNLPQPSSPMFTDAVFDAALPAIE----ASGGGVFMLCTTLRAVDRISAKLR 591 Query: 556 D------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 D LLVQGD R L++ R + ++LVG QSF EG+D++GD LS V Sbjct: 592 DTIEARGWDYPLLVQGDASRTELLD----RFRSYGNAILVGSQSFWEGVDVRGDALSLVV 647 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I K+ F P D PV+ E L PF V LP A L Q GRLIR+ G ++I Sbjct: 648 IDKLPFAPPDDPVLSARLEALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMI 707 Query: 670 YDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSP 711 D RL+ K YG+R+ +LP F + E + + E++ +P Sbjct: 708 CDTRLVDKPYGRRIWQSLPPFKRTRE--IEVVREFFEESATP 747 >UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 Tax=Gammaproteobacteria RepID=A1SX28_PSYIN Length = 662 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 156/694 (22%), Positives = 280/694 (40%), Gaps = 73/694 (10%) Query: 7 LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 L + + AL +Q+P FI R Q +M V + + ++ +L +EA TG GKT +YL Sbjct: 23 LISSFFSASGALSKQLPFFISRDAQIEMADAVTQAITKKQ--NLVVEAETGTGKTFAYLA 80 Query: 67 PGIA-IAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 P + + + +++ST + ALQ+Q++ KDLPLL T GR Y+C L Sbjct: 81 PALLTFDKASSEKIIISTGSKALQEQLFLKDLPLLMAATNFTGSVTVLKGRSNYLCNERL 140 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 ++ L ++ + GDL K D+A D + Sbjct: 141 ARFMLETKQREKALQIELIKI------KNWSLTSKTGDLAEIK--------DLAEDALII 186 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPK 241 ++++ +CL R C + +C AR++ ++++VV NH L A + E+ P+ Sbjct: 187 PSITSNNDNCLGRECPSFDDCFIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPE 246 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 + + DE H LPD+A S ++ + ++ L Sbjct: 247 AGVYIFDEAHQLPDIASLYFGESLS-------------SRQLIELAKEIEFVYRTELREA 293 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRG 361 ++++ ++L S + + R E ++ + ++ +++ Sbjct: 294 KQMSKAADQLR---LSALDFRMAFAIDKGTGSWRDKSKERVMQL-----HVDRILQVMDF 345 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWAT 421 L E+ L L + + + L + + + W Sbjct: 346 LKEVILERLGKSDVLDHCFERLTQFTLLFKKLNSV---------------NESGFSYWFE 390 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA 481 ++ H + + V+ + + + I TSATL F E+ GL+E Sbjct: 391 CTKQ----HFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLGLQE-- 444 Query: 482 GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 + + L SPF++ +Q V+PR+ EP + E A + L Sbjct: 445 -SQCLQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLAPVIR----ASKGRCFFLC 499 Query: 542 ASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 S M + L +L+QG++ + L++ N ++LV SF EG+D+ Sbjct: 500 TSHAMMNQLAAGFRQTLTFPVLLQGEKSKQALLD----EFINHGNALLVATSSFWEGVDV 555 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 +G +LS V I KI F + P++ E + + PF LP A Q VGRLIR+ Sbjct: 556 RGQVLSCVIIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGVGRLIRA 615 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G +++ D RL+T+ YG L++LP P + Sbjct: 616 EKDKGVLIVCDTRLVTRKYGNLFLNSLPCMPRTR 649 >UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteobacteria RepID=Q6AMF2_DESPS Length = 776 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 178/701 (25%), Positives = 285/701 (40%), Gaps = 75/701 (10%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE----------GRHLAIEAPTGV 58 L I + PR+ Q++M V+++L R L +EA TG+ Sbjct: 121 EDFFGENGRLAGLIDHYQPRSGQQEMAQAVSRSLMDSNDPDPHAVSAPPRVLVVEAETGI 180 Query: 59 GKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGR 117 GKTL+YL+P + K +VVSTA LQDQI K++PLL+K+ + GR Sbjct: 181 GKTLAYLLPAVI----SGKRVVVSTATRNLQDQIIHKEIPLLEKMFGGRVSAQCVKGRQN 236 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y+C S+ Q L+A D+ ++ EQ + + GD W + Sbjct: 237 YLCLYKWYQHRSS--AQLSLIAQDDE-----DKIEQWLASTVTGDRAELHW--------L 281 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL 237 A D LW ++S+ CL C C RR A +++ NH L + + + Sbjct: 282 ADDASLWHKISSQSDQCLGSECPEQENCFISRLRRRAAAARILIVNHHLFFSDLALKKEG 341 Query: 238 ---PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKT 294 P+ ++ DE HHL D+A S ++ R L +L + Sbjct: 342 YGEILPRYQAVIFDEAHHLEDIATTFFAKS--FSSYQLRDILSDAERLGDKIL------- 392 Query: 295 IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK 354 + + L + LN ++++ + + + E E + Q + Sbjct: 393 -----VSDEHKNLLSRLSGMRVRLNAFMHVFPKKRGKTALKELVTEYGQEAWQ--QEVEL 445 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 L + L + + G +VR + E L ++ + Sbjct: 446 LATGIAKLIVALTDLHFKGEGWQTLVRRCQ------------ECHDNLRLTGLARDTTSS 493 Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEM 474 W E+ + I V+ +L L+ + I+TSATL F L+E Sbjct: 494 NYVHWFEHREKS----IVLSVTPISVAKELNEFLYAGVESTIMTSATLSIGEKFDYLRER 549 Query: 475 SGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 GL +++ SPF + EQ + IP N + + + +E + Sbjct: 550 LGLPADT--KYLRFASPFAYKEQALLYIPEGGFP--ETNAPDYGQKSCERILQILEQSRG 605 Query: 535 LGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 L+LF S AM+R ++TD + +LVQG R L+E + SVL+ + S Sbjct: 606 R-ALILFTSFSAMERAATWLTDKIDYRMLVQGRHSRKHLLEEFKA----DRDSVLLAVAS 660 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D+ G+ LS V I K+ F PV+ E++K+ PF +P A L Q Sbjct: 661 FWEGIDVAGEALSCVIIDKLPFEVPTDPVIQARMEYIKAAGGNPFMDFQVPRAVLTLRQG 720 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 VGRL+RS G + I D RL +K YGKR L +LP P+ + Sbjct: 721 VGRLMRSDRDRGLITILDIRLFSKFYGKRFLRSLPPAPVTR 761 >UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH Length = 651 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 172/693 (24%), Positives = 269/693 (38%), Gaps = 83/693 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 +++ L E + +F PRA Q+QM A V + L E + L +EA TGVGKT YL+P Sbjct: 6 SEVLGPDGPLAETLTNFRPRAAQQQMAAAVERAL--EARQALVVEAGTGVGKTFGYLVPV 63 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD------LKFTAAFGRGRYVCPR 122 + + + ++ST LQDQ++ KDLP ++ + + GR Y+C Sbjct: 64 LM----DGRRTILSTGTKNLQDQLFQKDLPFVRDALVGAGLGRVPRVALLKGRSNYLCRH 119 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L + + ++ + + + + I D Sbjct: 120 RLDLAREDGR---------------LGAAQTDQLLRVVRWVSRTTRGDIGELSGIPEDSP 164 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPD 239 LW ++++ +CL ++C Y +C ARRE QEA++VV NH L+MA + E Sbjct: 165 LWPQVTSTPDNCLGQDCPEYEDCFVVRARREAQEADLVVINHHLLMADLTLKEEGFGEIL 224 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P VLDE H LPDVA S R LDL VA + + Sbjct: 225 PSADAFVLDEAHQLPDVASAFFGRSVGS-----RQLLDLARDAVAEQLREAS-------- 271 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 +L + +L+ + R ++ I + L L Sbjct: 272 -------DMGDLRDAADALSMAVAALRSELGATSGRSPWTRH-EQDARITGAMDSLVARL 323 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 L G R A + RL + + +W Sbjct: 324 ETLVMWLDTAADRGKGLEQCAR---------------RANTLRARLLAFMKPE-PDTVRW 367 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 R H + V+++ + I SATL F GL++ Sbjct: 368 VETFTRA----FALHATPLNVAERFGERMRAYPSAWIFASATLSVGGRFEHFTGRLGLEQ 423 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + LDSPF++ ++ +P +P+ N + E A + G + Sbjct: 424 A---ETLMLDSPFDYSRNARLYLPANMPQPNAPNHTAAVVEAALPVIE----ANPGGTFM 476 Query: 540 LFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 LF S RA++ + L LLVQG PR L+ R +VL+G SF EG+ Sbjct: 477 LFTSHRALREAAQLLEGRLERELLVQGTAPRDELL----ARFRAAGDAVLLGAHSFWEGV 532 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D++G LS V I K+ F D P++ + ++ PF LP A +L Q VGRLI Sbjct: 533 DVRGRALSCVIIDKLPFAAPDDPLLEARLQAIRDAGGNPFMDYQLPQAVLSLKQGVGRLI 592 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 R G +++ D R+ TK YG+ + +LP P Sbjct: 593 RDVTDRGVLMLCDPRIRTKAYGRLFISSLPPIP 625 >UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB18_KANKD Length = 653 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 178/708 (25%), Positives = 284/708 (40%), Gaps = 80/708 (11%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 MA A+L ++ + L + F+ R+ Q QM + + +E + IEA TG GK Sbjct: 1 MATLASL-EELFSADGLLADYFEGFVRRSEQEQMAQSIESAI--KEEASICIEAGTGTGK 57 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 T +YL+P + E+ ++VST LQDQ+Y +DLP + K + K GR Y+ Sbjct: 58 TFAYLVPALKSWYEQDSKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYL 117 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L + Q + + ++ + GDL TD+A Sbjct: 118 CQYRLQQSLESGRFQSRSM------VDTLSRVNEWSVKTTSGDL--------TQCTDLAD 163 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAV 236 +D LW +++ +CL C Y EC AR+ A+VVV NH L++A M E Sbjct: 164 NDPLWSYVTSTNENCLGAECPDYAECFVAKARQRAVTADVVVVNHHLLLADMVLKEDGFG 223 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P ++V+DEGH L D+A ME R + Sbjct: 224 ELLPDADIVVVDEGHQLADIAHSFYGRRL----------------TSRQLMEICRDTELE 267 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L + + + ++N I +GQ+ + + ++ LA+L Sbjct: 268 ALTNAKDDRQLSVAVRRVEGAVNEIRLSLGESGQKKNWQQIVNPQRKQL------LAELK 321 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 + L L S G + H+ + L F + Sbjct: 322 KELGALHSRLERHASRSKG---LDSCHKRAEECLHTLAFFSDKD-----------QELTA 367 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERL-LWRSIPHIIVTSATLR-----SLNSFSR 470 +W + + + VS + +S + TSAT+ + F Sbjct: 368 VRWVETYRQGFAMME----TPLDVSKAFAQSCREQSTRSWVFTSATITQASSKGTSDFKH 423 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 +E GL E R + L SPF++ Q + IPR +P + I VE Sbjct: 424 FKERLGLDEA---RELELPSPFDYASQAILHIPRGLADPRSKD---FINNWQQAVLPIVE 477 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTD--LRLMLLVQGDQPRYRLVELHRKRVANGERSVL 588 + G VLF S AM + + D L +L+QG++P+ +L+E R+ +VL Sbjct: 478 ANPG-GTFVLFTSYSAMHQVQELWKDKLLDKTVLMQGEKPKNQLIEDFREE----GNAVL 532 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 + SF EG+D+KG LS V I K+ F D P++ + + ++ + PF +P A Sbjct: 533 LATSSFWEGVDVKGLALSCVIIDKLPFAAPDEPLIEAKIQAMRKSGKNPFFDLQIPEAII 592 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPE 696 L Q GRLIR G +V+ D RL+ YGKR L +LP + + Sbjct: 593 ALKQGAGRLIRDQKDRGVLVLCDPRLIANAYGKRFLRSLPPMRRTREQ 640 >UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URD7_AKKM8 Length = 661 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 187/706 (26%), Positives = 301/706 (42%), Gaps = 68/706 (9%) Query: 1 MALTAALKAQIAAWY--KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGV 58 M +A +A + + L + DF RA Q+ M VA+ L + L +EA TGV Sbjct: 9 MEGVSAFEAYVHRAFAPDGLFSRARDFEYRAEQQSMALAVARALQVDAP--LLVEAGTGV 66 Query: 59 GKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGR 117 GK+L YL+P + A + + V+ST + LQ+Q+++KD+PLL+ + D GR Sbjct: 67 GKSLGYLLPAVKFALDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQN 126 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y+C L LA +D T E KR D DG Sbjct: 127 YLCHTRLRRA----------LAQMDSLFTQGEAAELKRIQ----DWALRTQDGTLSDMAF 172 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM----AAMES 233 +W + ++ +C R+C CP+ AR+ + EA+VVV NH L A +S Sbjct: 173 RPSSKVWAMVCSEPHACSMRHC--GPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDS 230 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 E ++LDE H + ++A L + L + + P+ Sbjct: 231 EEAGFVFPGDFVILDEAHMIENIAARQLGVQLSE------------PHLNYELLRMYNPR 278 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 T L P + L++ + + + L+ ++ G++ + I Q Sbjct: 279 THKGLLKP----LNNPSLFQRVQDVMDASGLFFQNARDDLGFAGSGKI----VRILQPEW 330 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 + + L EL +E+ + + + M + +A K+ L + Sbjct: 331 SQDILSQPLMELIGELKTEREKQEENAAVKDELADMAARMEEAQASLKV-----LMDMTE 385 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN-SFSRLQ 472 WA R +G+ ++ + V D L L+ + I+TSATL + + S Sbjct: 386 EGHVYWAERSGPDGR-NMSVCSAPVEVGDILRERLFSAGRSAILTSATLGTGDADMSYFA 444 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 G + R + + SPFN+ EQ ++++ R EP ++ AE+ + K+ ++ Sbjct: 445 GRVGAERI---RKLQIGSPFNYREQMRLIVARSMPEP----DQPEYAEVLPEWIKRYLAE 497 Query: 533 KHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVELHRKRVANGERSV 587 VLF S R M + + V + L VQG D R+ ++E RK V SV Sbjct: 498 SRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVD----SV 553 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L G SF G+D+ G+ LS V + ++ F D P+V + E ++ PF S+P A Sbjct: 554 LFGTDSFWTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAI 613 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 L Q VGRLIR+ G VVI D R+ TK YG R L +LP +E Sbjct: 614 LKLRQGVGRLIRTRSDSGMVVILDPRVATKRYGMRFLKSLPEARLE 659 >UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B4ST01_STRM5 Length = 681 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 173/683 (25%), Positives = 283/683 (41%), Gaps = 61/683 (8%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 AL + F+PR Q ++ +A L ++ L EA TG GKT +YL+P + Sbjct: 16 GALASHLDAFVPRPAQLRLTEAIADAL--QQRDLLLAEAGTGTGKTFAYLVPVLLSGLRT 73 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ++ST ALQDQ+Y +DLP +++ + L+ GR Y+C L Sbjct: 74 ----IISTGTRALQDQLYHRDLPRVRQALGVGLRSALLKGRANYLCRYRLQQARG----- 124 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 E ++ E+ + ++ ++ + + +A D L +++ +C Sbjct: 125 ---------EPRFSSPEQAAQFQRILAWSGRSEFGDIAELDGLADDSPLLPMVTSTVDNC 175 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLLLVLDEGH 251 L +C ++ +C AR+ Q A+VVV NH L++A + + P V+DE H Sbjct: 176 LGTDCPFWDDCFVVRARQRAQAADVVVVNHHLLLADLALKQDGFGELLPGAQAFVIDEAH 235 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 LP++A + + +L C+ + R A+ E ++ + L Sbjct: 236 QLPELAAQFFGEG---------FGMRPWQELGRDCLAEARGVGGAQSALQEPVDQLQQAL 286 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 L +++ +P+ AM ++ D + L L + L+ L E Sbjct: 287 LALRSAMEG-----LPSRGTQWRALAMPQVRDGFDTVMAGLVMLEQALQPLREAAAGL-- 339 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 R + +++R LG + + L ++++ A W R Sbjct: 340 ----DACHARAREAVSRLSRWLG--DDEPTLDFDTDPSEANSAADVLWYELTPRG----F 389 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 + VS L RS I TSATL F + GL + + SP Sbjct: 390 RCQRTPMDVSGPLREHRERSRAAWIFTSATLTVGGGFDHIATRLGLDD---PHTLVQPSP 446 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 FN EQ +P +P+ + + + V +LFAS RA++ Sbjct: 447 FNWPEQALCYMPEGLPDPAARGFGTALIQS----LRPVLQASQGRAFLLFASHRALREAA 502 Query: 552 DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 + + D L VQG+ PR L++ R+ VL+G SF EG+D+ G+ LS V I Sbjct: 503 EALRDGPWPLFVQGEAPRATLLQRFRE----SGNGVLLGSASFREGVDVVGEALSVVMID 558 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 K+ F D PV E ++S PF + LP A L Q VGRLIRS G +V+ D Sbjct: 559 KLPFAAPDDPVYEARLEAIRSQGGNPFRDEQLPQAVIALKQGVGRLIRSESDRGVLVLCD 618 Query: 672 KRLLTKNYGKRLLDALPVFPIEQ 694 RLL + YG+ LD+LP F + Sbjct: 619 PRLLNRGYGRVFLDSLPPFRRTR 641 >UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQY0_9GAMM Length = 664 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 186/717 (25%), Positives = 294/717 (41%), Gaps = 77/717 (10%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +AA++A + L E + F PR PQ++M V L G+ L +EA TGVGKT + Sbjct: 15 SAAVRA--LSPGGDLAEALHGFRPREPQQRMAVAVESAL-GQAPTALLVEAATGVGKTFA 71 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPR 122 YL+P + + ++ ++ST LQDQ++ +DLP + + + + GR Y+C Sbjct: 72 YLVPAL----QARRKALISTGTKTLQDQLFERDLPTVCEALGYRPRTALLKGRANYLCHY 127 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L LA+ E Q + + + Q GDL +A D Sbjct: 128 RLE-LAAAEAGGQTQRSAQRERMPVIEALRQFARTHPTGDLGQA--------GILAEDSP 178 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPD 239 LW ++++ +CL C Y +C AR+ Q+A++VV NH L++A M E Sbjct: 179 LWPQVTSTVDNCLGGECPQYNDCFVVQARKRAQDADIVVVNHHLLLADMALKEEGFGELL 238 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P+ +++DE H LP++A +S A L + V EQ P+ + Sbjct: 239 PEVDAVIVDEAHQLPEIAGAFFGVSVGSRA------LRDLARDVRREQEQAAPEMVM--- 289 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + E L ++ + A Q E R A ++ +E ++ L +L E L Sbjct: 290 -----------IREAAVELETVVKKLLEATQGMEPRAAW-DVVNEKGQVDPSLEELDEAL 337 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 R L++ G + ++ +L M L + + W Sbjct: 338 RALSDALAPATERGPG---LEQVQGRVLLMRERLQGW-------------REDTPDTVAW 381 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 R L H + + L + + TSATL F+ GL Sbjct: 382 VER----FAQSLILHRTPLDAARPLAQRRAARPAAWVFTSATLAVGEDFTHASRRLGLPV 437 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + L+SPF+ Q +V P+ P+ N + A+ + G Sbjct: 438 DVAQQ--RLESPFDFARQACLVHPQ-PPLPN-PNSPDYTRACVAWAWPLLRDNPGGG-FF 492 Query: 540 LFASGRAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 LF S RA+Q + LLVQG+QPR L+ R + L+G SF EG Sbjct: 493 LFTSHRALQEAAALLRAELPDRELLVQGEQPRNDLL----ARFRESGNAWLLGAHSFWEG 548 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +D++G+ LS V I ++ F + PV+ + L++ R PF SLP A L Q GRL Sbjct: 549 VDIRGEALSVVIIDRLPFAAPNDPVLQARAQALEAEGRSPFMEFSLPQAVLALKQGAGRL 608 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRR 714 IR G + I D RL K YG+R L +LP F + + + + R R Sbjct: 609 IRDADDAGILAICDPRLTGKPYGRRFLASLPPFYRTRDPIA-----ALQFLATARER 660 >UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRY2_9GAMM Length = 646 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 185/690 (26%), Positives = 279/690 (40%), Gaps = 80/690 (11%) Query: 14 WYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 L+ +P F R Q++M A VA LA EG +EA TG GK+ +YL+P + Sbjct: 13 ADSPLRRILPHFHVRRQQQEMAAQVAGWLA--EGGVGLVEAGTGTGKSFAYLLPALL--- 67 Query: 74 EEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA-AFGRGRYVCPRNLTALASTEP 132 ++ +++STA+ ALQDQI KD+P+L + + GR Y+CP L Sbjct: 68 -CERKVLISTASRALQDQILDKDIPVLAQAWSSPRRVVRLKGRSNYLCPFRLQRA----- 121 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 L + + P + A G + + + + +W +++ + Sbjct: 122 --------LAEGVAPRLARDLLVVADWAGRTGEGD---IAELSALPESSPVWPLVTSTRD 170 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA----MESEAVLPDPKNLLLVLD 248 +CL +C + CP AR+ EA+VVV NH L++A +ES L P+ +++D Sbjct: 171 NCLGSDCPEFARCPVIAARKRALEADVVVVNHHLLLADLALRVESRGDLL-PRVDAVIID 229 Query: 249 EGHHLPDVARDALE--MSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 E H L D+A +S+ W R E L +P RL Sbjct: 230 EAHQLADLAGQYFGQHLSSHQLLEWARDSRQALLAAARDDAE---------LGLPARLEQ 280 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 H E L + + F + L + ++ A+L L+ L E Sbjct: 281 HIEHWLAQGQQLPGGESRWE------WPSFPVQVLTASLRQVASEAAQLESTLQSLREF- 333 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 S ++ + Q+ L F L S +W R R Sbjct: 334 ---------SKELEQCAGRGEQLTGLLEFF-----------LKPESEPSAVRWLERRGRG 373 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE-KAGDRF 485 L H I + L L+ I+ SATLR F L+ GL E + + Sbjct: 374 ----LLLHASPIDLGPLLRGELFARNATTILVSATLRVGGDFGALEARLGLVEGEPSPQH 429 Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 DSPF++ Q + +P EP+ E A + LF S R Sbjct: 430 FVADSPFDYTCQALLYLPPQMPEPASPQFTAACIEAAIPVIE----ASGGRCFFLFTSHR 485 Query: 546 AMQRFL-DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 A++ + L +LVQG PR RL++ R+ +VL+G SF EG+D++G+ Sbjct: 486 ALREAAVELPQRLDFPILVQGSMPRARLLDAFRR----AGNAVLLGAASFWEGVDVQGET 541 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 LS V I K+ F PV+ ++ PF LP A L Q VGRLIRS Sbjct: 542 LSCVIIDKLPFANPGDPVLRAHHRHCAAMGGDPFRDLQLPQAVIALRQGVGRLIRSESDR 601 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G + I D RLL K YG+ L +LP P+ Q Sbjct: 602 GVLTICDPRLLNKGYGRIFLRSLPPIPVVQ 631 >UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMW6_HALO1 Length = 650 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 173/691 (25%), Positives = 282/691 (40%), Gaps = 67/691 (9%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + L ++ P + PR Q + V +A +G HL EAPTG GK+L+Y +P Sbjct: 7 TVFGPEGLLADRFPAYAPRPGQISLARAVDAAIA--DGEHLLAEAPTGTGKSLAYAVPAS 64 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 A +V++T+++ LQ+Q+ +KDLP L+ I+P ++F G+ Y+C L Sbjct: 65 YHAAHNGLRVVLATSSINLQEQLAAKDLPFLEGILPWPVRFALLKGKRNYLCLSRLQEAK 124 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 ++ E KR + D + G + D +W S Sbjct: 125 KDGFV-----------FDISSDIEMKRSIQ---DWASETKTGDKSELSFEPPDRIWENYS 170 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME----SEAVLPDPKNLL 244 T C R+C YY EC AR E ++A+++V+N+ L+ ++ + L PK + Sbjct: 171 TSAEECKGRDCRYYSECFATKARAEAEKADIIVSNYHLLCVHLQLREATGQDLVLPKFDV 230 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 V DEGH L D+ARD +R+ L ++ ++ L Sbjct: 231 AVCDEGHKLADIARDFFG---------FRVTPGSLRWLAKRIQDR------DHASLALAL 275 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML-RGLA 363 + + +E + + R E P L + L ++ + + Sbjct: 276 DVESRDFFEALHRYQRS--------DAYKCRLRQIE-PVPYLNLHGLLREIADFFGQTRN 326 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 + R+ L A L LA + Sbjct: 327 SAPDPGMDGFDAETQAARIDDLAEAQRTAARAALLADNLSAAMELANKD---FVYYLEEL 383 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 + G + I V++QL + IVTSATL + +SF +++ G+ Sbjct: 384 PKGG---VALCGKPIEVNEQLRTAFFDQTQSTIVTSATLTTGDSFDYVRKDLGVP---SP 437 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 R + +DSPF+ +Q ++P ++P +A + +Q L LF S Sbjct: 438 RELVVDSPFDFRKQVLFIVPDCVIDPRGPGFPTCVA----WTVEQAVRLAGGRTLGLFTS 493 Query: 544 GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 R + + D +L QGD+PR +LV+ R+ V SVL+G +SF G+D++G+ Sbjct: 494 YRNLDTAYARIADCGYRVLRQGDKPRTQLVDEFRRDVK----SVLLGTESFWAGVDVQGE 549 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I ++ FPP + PV+ LK F SLP A Q GRLIR+ Sbjct: 550 ALSCVVIDRLPFPPPNDPVIDA----LKERGGNSFLSASLPRAIIAFKQGFGRLIRASDD 605 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G VV+ D+RL T YG+ L +LP + Sbjct: 606 RGVVVVLDERLYTTFYGRAFLRSLPAMRKSR 636 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 166/704 (23%), Positives = 275/704 (39%), Gaps = 49/704 (6%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + + ++ + R Q QM+ V +L G G HL +EA TGVGK+L+YL P Sbjct: 269 ESLFGTDGPIGRELRGYEVREQQLQMLRAVGDSLMG--GVHLVVEAGTGVGKSLAYLTPA 326 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + A E + +VVST LQ+Q++ KD+P L++++ D GRG Y+C + Sbjct: 327 VYFAVENGERVVVSTNTKNLQEQLFLKDVPFLERVLDIDFSVALLKGRGNYICQARWRQV 386 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + + L L + + ++ +W R+ Sbjct: 387 LEKGLSSSERSQLLPVALWE----------------QETRSGDISENAAFRQYGYVWNRI 430 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 S D CL + C C AR+ Q A +V+ NH+L+ + E++ + + L+ Sbjct: 431 SADGGPCLGQKCPMRETCYLLKARKASQAAHLVIVNHSLLFSDTEADNRILG-EYSYLIC 489 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKL----VATCMEQFRPKTIPPLAIPER 303 DE H++ VA + L + + R LD + E + A+ E Sbjct: 490 DEAHNMEQVATEHLGKRSNVWRA--RAMLDNLYRNEGGPSGDLGEVMGALSGTDGALLES 547 Query: 304 LNAHCEELYELIASLNNILNLYMPA--------GQEAEHRFAMGELPDEVLEICQRLAKL 355 A E L + + + + + A E F E +L Sbjct: 548 ATAGVERLASDVTAASAAVETFFTALAARHIDLNDGREVEFGKLRYRQEAPVSALLEEEL 607 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 +L L+ + S D N + L +A+++ Sbjct: 608 AGVLAALSTVARGAESVADLITDSELDRAESFVQNLTFHAARVREFAADLEYVAEAADPG 667 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 W + V++ + L+ + +I TSAT+ SF + E Sbjct: 668 SVFWLDVRTFRDVFECELRSAPVSVAEMMGDFLYSRVDSLIATSATMTVDGSFDFVMERM 727 Query: 476 GLKEKAGDRFVALD--SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 GL + + LD SP+++ Q V+ +PS Q ++ + ++ + Sbjct: 728 GLDLIPDWKVLTLDVGSPYDYDAQSIAVVAGYLPQPSSSGFNQTVSRLVVKLAERAQ--- 784 Query: 534 HLGMLVLFASGRAM----QRFLDYVTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVL 588 G LVLF + A+ + LD +T ++L QG L+E + V SVL Sbjct: 785 -GGTLVLFTARSALDAVFKSVLDPLTSRGKLVLAQGHGGASSALLEQFAREVD----SVL 839 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 + SF EG+D+ G L Q+ I K+ FP PVV E ++ F +P + Sbjct: 840 LATSSFWEGVDVPGRSLEQLVIVKLPFPVPRDPVVEAHCERYEADGENSFGRYMIPRTAI 899 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 L Q GRLIRS G V+ D RL T+ YG+RLL+ LP + Sbjct: 900 RLRQGFGRLIRSTTDSGAVIFLDSRLSTRAYGERLLEQLPTRTV 943 >UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad3 n=6 Tax=Legionella RepID=Q5ZU85_LEGPH Length = 666 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 168/687 (24%), Positives = 280/687 (40%), Gaps = 78/687 (11%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L IP F+ RAPQ + +A + + L EA TG GKT +YL+P + Sbjct: 33 GRLSTAIPGFVARAPQADLAVAIANAIV--QRSILVAEAGTGTGKTFAYLLPCLL----S 86 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 K ++STA LQDQ++ KDLP L + + ++ GR Y+C + A Sbjct: 87 GKKALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEG--- 143 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD-IAIDDDLWRRLSTDKAS 193 F + + + ++++ +G+R I D +W +++ + Sbjct: 144 ----QFQSPQCAHEILHVRDKLSQMQ--------EGVRSELPEINEDSSVWHYVTSTTDN 191 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD---PKNLLLVLDEG 250 CL C + C AR+ EA++VV NH L A + + P ++V DE Sbjct: 192 CLGAECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEA 251 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H L D+A + RL F LV + ++ L+ + Sbjct: 252 HQLADIASNFNGE---------RLGTRQFKDLVDDMLNEWPI-----------LDLANQP 291 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L + + +++ + A E R + ++ +R + E ++L Sbjct: 292 LKSISHKADKLVDQLLNALPTREERISW--------DLVKRNKEFMEAWNTWLS-LKDEL 342 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 + S D + L R L L + +W R + Sbjct: 343 IQCLESKDTADIPGLKRCKERLLD-------LETVLLSFTEENNHKIRWIERFKHT---- 391 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490 L FH V++ +LL I TSATL + F + GL + + + L S Sbjct: 392 LVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASVFDSFCKPLGLDK---VQTLLLSS 448 Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550 PF++ +Q + +PR +P + + + E A + LF S +A++ Sbjct: 449 PFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEAC----GGRCFFLFTSHKAVKLV 504 Query: 551 LDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 +++ L+ LL+QGD+ + L+ R +VL+G +F EG+D+KG+ LS V Sbjct: 505 AQMMSNTLKYPLLIQGDEAKPILL----SRFRQLGNAVLLGTSTFWEGVDVKGEALSCVI 560 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I K+ F PV+ +LK F+ SLP+A L Q VGRLIR G ++I Sbjct: 561 IDKLPFANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMI 620 Query: 670 YDKRLLTKNYGKRLLDALPVFPIEQPE 696 D RL + YG+ +L +LP P + E Sbjct: 621 ADPRLTGREYGRTILASLPGLPKTRDE 647 >UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYH8_HALNC Length = 668 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 159/690 (23%), Positives = 262/690 (37%), Gaps = 73/690 (10%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + L + PRA Q QM + + + R + IEA TGVGKT YL P Sbjct: 22 QDVFGESGVLAAAFSGYQPRAGQLQMAEIIRDAIT--DSRTVVIEAGTGVGKTFGYLAPI 79 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCPRNLTAL 127 + + +VST LQDQI+S+DLP +K+++ + GR Y+C L Sbjct: 80 LLA----GRKAIVSTGTKHLQDQIFSRDLPQIKQLMGSTTRTALLKGRSNYLCLHRLERA 135 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + + D +T + + GD+ ++ + +W + Sbjct: 136 MTEGRLKS------PDWVTALHTIKGWSTRTRDGDIARCD--------AVSEEHGIWPLV 181 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLL 244 ++ +CL + C + EC AR EA++VV NH L A + +S P+ + Sbjct: 182 TSTNENCLGKECPVFDECFVVKAREAAHEADLVVINHHLFCADIAIRQSGFAQLLPEADV 241 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 +VLDE H LP++A + +DL +V Sbjct: 242 VVLDEAHQLPEIASLFFGSALSSGQ-----MIDLLRDIVREQ------------------ 278 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 A ++ +L+ ++ P ++ E+ E A + LA+ Sbjct: 279 QAEAVDMSDLLGVVHQFELAIDPCVLALKNARTDRIAWQELREDKTIQAAFDTLETRLAD 338 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 L + H +QM ++L F ++ +W R E Sbjct: 339 LTAALELAAPRGKGLASCHERAIQMRQSLSHFRRSEEITT-----------EVRWLERRE 387 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + + + ++ + SATL + FS L + Sbjct: 388 KS----FTLNITPMDAGQTFSDVVESQPRAWVFASATLAAGKDFSHFTRRLNLNLALCQQ 443 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 SPF++ Q + +P +P D + ++ +++ +LF S Sbjct: 444 T---PSPFDYPNQAIMYLPPNPPDPKTD--PDYTLKILRAVFPVLKAS-GGRAFLLFTSH 497 Query: 545 RAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 R +++ D + L L VQG Q + L+E R VL+G QSF EG+D++G+ Sbjct: 498 RELKKAADILEGKLPFPLFVQGTQAKAALLEQFR----QSGNGVLLGTQSFWEGVDVRGE 553 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I +I F D PV +K PF +LP A Q VGRLIR Sbjct: 554 ALSVVMIDRIPFASPDDPVRRAREAQIKESGHSPFAAMALPEAIITFKQGVGRLIRDVTD 613 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 G +V+ D RL +G+++LDALP Sbjct: 614 RGVLVLCDPRLQRTGFGRQILDALPPMRRS 643 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 162/711 (22%), Positives = 289/711 (40%), Gaps = 56/711 (7%) Query: 10 QIAAWY----KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 +I +W KAL E +P + R Q M+ +VA A E H IEAP G+GKT+ YL Sbjct: 238 EIESWEAGNEKALSELMPGYEKRDGQMMMMREVADAFANRE--HALIEAPPGIGKTIGYL 295 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 IP A++ +K +++ST + LQ QI +KDLP+++ + P + G+ Y+C Sbjct: 296 IPAALFAKKSKKPVIISTYSTLLQQQILTKDLPIVQDLFPFPVTAAILKGQSHYLCLYKF 355 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + E D + Q GD+ + LW Sbjct: 356 EQVLHEEDDNYDA-------VLTKAQLLVWLTETNTGDVAELNL--------PSGGKLLW 400 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL 244 RL+ D S + + A++ +++V+ NH+L++ S P++ Sbjct: 401 DRLAYDDDSYKRSRSEHV-IGFYERAKQIAMRSDLVITNHSLLLTDEGSHKKRL-PESGT 458 Query: 245 LVLDEGHHLPDVARDALEMSA---EITAPWYRLQLDLFTKLVATCMEQFRPKTIP----- 296 ++DE HH A + L A E+ R+ L+ + F+ ++P Sbjct: 459 FIIDEAHHFERAASEHLGKRATYIELHTKLSRIGTLKEQGLLKKMRQLFQRNSLPVDSFF 518 Query: 297 -PLAIPERLNAHCEELYELIASL-------NNILNLYMPAGQEAEHRFAMGELPDEVLEI 348 + + A + + + S ++ L +E++ + + L D + Sbjct: 519 ELEEWLQHVQAESDAFFSSVHSFVKRRKPKEDLNRLVFKVNKESQDK-SWSILTDGAERL 577 Query: 349 CQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASL 408 C L L ++ + L L + S + M Q L L Sbjct: 578 CSMLTHLQQLFEAQSSLMEKHL-KGMKSKTVFLADEYQRSMKGL------QHYCQTLQKL 630 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 S W + + + + + + + L + +++TSATL SF Sbjct: 631 FFGSDDDEAVWIEIDAKGAKNAVAIYAQPLEPGELLADQFFARKNSVVLTSATLTVEGSF 690 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 + E GL + R + ++SPF++ E+ +++IP+ + + I + A + + Sbjct: 691 QFMIERLGLSDFFP-RTMRIESPFSYDERMQVMIPKEMKSIQDTGQPEFIQDTARYI-EL 748 Query: 529 VESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYRLVELHRKRVANGE 584 + +K +LVLF S +++ + + LL QG K Sbjct: 749 MAKEKQPKILVLFTSHDMLKKVHQELKHNMSASGIQLLAQGITGGSP--GKLMKTFKTSN 806 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 +++L+G F EG+D GD L+ V I ++ F D P+ + E + + PF+ SLP Sbjct: 807 QAILLGTNHFWEGVDFPGDELTTVMIVRLPFRSPDHPLHAAKCELARKKGKNPFQTVSLP 866 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP 695 A Q +GRL+RS G G ++I D+R+ T YG+ LDALP + + Sbjct: 867 EAVLTFRQGIGRLLRSAGDKGTIIILDRRIKTAGYGRLFLDALPTTSVSEM 917 >UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2JIT4_BURP8 Length = 757 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 182/749 (24%), Positives = 282/749 (37%), Gaps = 121/749 (16%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQR--------------------QMIADVAK-------- 40 A I A L QI + PRA Q M + Sbjct: 52 ADIFAADGLLARQIDGYRPRASQIEMARAVAAAMEASGRAMPEPAMFEAQKRPARRLQHT 111 Query: 41 ------------------TLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 L G E L +EA TG GKT +YL+P + ++VS Sbjct: 112 SSASATDAPADQASSPEGALEGGENT-LIVEAGTGTGKTYAYLVPAMLW----GGKVIVS 166 Query: 83 TANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 T LQDQ++ +D+P ++ + + GR Y+C L A Sbjct: 167 TGTKHLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPS------ 220 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 E + + GD + +W +++ + +CL + C + Sbjct: 221 RQETSYLQDIIRFAKITRTGDKAEL--------ASVPETAAVWSMVTSTRDNCLGQECPH 272 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLLVLDEGHHLPDVAR 258 Y++C ARRE Q+A++VV NH L A + ++ P ++ DE H LP+ A Sbjct: 273 YKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETAT 332 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 + T L+L VA + R + +L A+L Sbjct: 333 LFFGETLSTTQF-----LELARDSVAEGLGHAR---------------DAVDWVKLGAAL 372 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 A +E R ++G+LPD+ + L + L LA + + Sbjct: 373 ERSARDVRLAFKEDSVRLSIGQLPDDH-PLFPALEAVETELDALASALA---GQSERAES 428 Query: 379 IVRLHRLILQMNRALGMF-------EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 + L R ++ L + E + A+ +S +W QLH Sbjct: 429 LGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDPNEKVRWIEVFSHTVQLHE 488 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 + V+ + + TSATL F+ GL R + L SP Sbjct: 489 ----TPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLN---SRRSMTLPSP 541 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F++ QG + +PR +PS + + A + G+ +L + RA+ R Sbjct: 542 FDYGTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIE----ASGGGVFMLCTTLRAVDRIA 597 Query: 552 DYVTD------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 + D + LLVQGD R L++ R + ++LVG QSF EG+D++GD L Sbjct: 598 SKLRDVIESRGWNMPLLVQGDASRTELLDRFR----SYGNAILVGSQSFWEGVDVRGDAL 653 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 S V I K+ F P D PV+ + L PF V LP A L Q GRLIRS G Sbjct: 654 SLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSETDRG 713 Query: 666 EVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 ++I D RL+ K YG+R+ +LP F + Sbjct: 714 VLMICDTRLVDKPYGRRIWQSLPPFKRTR 742 >UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EML2_ACIF5 Length = 641 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 175/681 (25%), Positives = 272/681 (39%), Gaps = 79/681 (11%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 AL +P F R Q+ M A VA TL +G IEA TG GKT +YL+P + Sbjct: 19 GALARALPQFRAREQQQAMAAQVAHTL--RDGGVALIEAGTGTGKTFAYLLPAML----S 72 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 + ++VST + ALQDQI KD+PLL + + L+ + GR Y+C L ++ Sbjct: 73 GRKVLVSTGSKALQDQILEKDIPLLLRAMGKPLRVSRLKGRANYLCRHRLQRFSA----- 127 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 + + P R A G L + D +W +++ + +C Sbjct: 128 --------EGVAPALVAPLARVADWAGRTREGDVSELTS---VPEDSPIWPLVTSTRDNC 176 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPKNLLLVLDEGH 251 C Y C ARR+ QEAE++V NH L+ + + + P+ +VLDE H Sbjct: 177 PGSECPEYGRCHVIEARRQAQEAEILVVNHHLLFSDLALKANGMGDLLPRVDAMVLDEAH 236 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 + D+A W R +T+ E L A Sbjct: 237 QVLDLAGRYFGQHLSSHQLW-------------DWGRDSRAETLAEAGDDEGLLAAA--- 280 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 A + + + R + PD A+L + + L + + Sbjct: 281 ----AQVETQTTAWRTVLGPGDERGSWALNPDSAE--GSAFARLRQAVAELGQALNAAAA 334 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 G L + A + + W ++ R Q Sbjct: 335 RGKGLEQCAA---------------RGVVLLATVDFFAAHNAPNMVFWQEKKSRTVQ--- 376 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 H + V+ L+R L + +I+TSATLR +SF+ + GL + + SP Sbjct: 377 -LHATPLDVAAPLQRHLLEPVESVILTSATLRVGDSFASTERALGLTAVS---TLTAASP 432 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F++ Q + +P + EP + + + AA + LF S RA+Q Sbjct: 433 FDYARQSLLYLPPLMPEPGHPSYTRACLDAAAPVIE----ASGGRTFFLFTSHRALQEAA 488 Query: 552 -DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 L +LVQG PR RL++ R + +VL+G SF EG+D++G+ LS V I Sbjct: 489 VSLPQRLSFPILVQGSMPRPRLLDRFR----SLGNAVLLGAASFWEGVDVQGEALSCVII 544 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 K+ F P++ E ++ PF +P A L Q VGRLIRS G +++ Sbjct: 545 DKLPFANPSDPILRARTEQCQAEGGEPFRELQIPQAVIALRQGVGRLIRSEMDRGVLMLC 604 Query: 671 DKRLLTKNYGKRLLDALPVFP 691 D RL +K YG+ LD+LP Sbjct: 605 DPRLRSKGYGRIFLDSLPPMR 625 >UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A0KWC1_SHESA Length = 674 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 162/699 (23%), Positives = 284/699 (40%), Gaps = 77/699 (11%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+ A+ + A L + I F R Q +M +++ +A + + IEA TGVGK Sbjct: 35 MSRLASEVLRAFASDGVLAKHIQGFSARQSQVEMAQIISEAIASK--GNALIEAGTGVGK 92 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 T +YLIP I K ++VST + LQ+Q++ KDLP L ++ K GR Y+ Sbjct: 93 TFAYLIPAIL----SGKQVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYL 148 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L + ++ + + G GL +A Sbjct: 149 CQHRLDKQMQEASH-----------IEARLLDDLLKINQWAGMSKDGDIGGLTS---VAE 194 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAV 236 + + + K +CL + C +Y C AR +A+++V NH L A ++ Sbjct: 195 NSPALPLVVSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHHLFFADSVLKDTGFA 254 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P +++ DE H LPD+ + ++ + +++ Sbjct: 255 ELLPDPDVVIFDEAHLLPDICVSYFGQQSS-------------SRTIDDYLQKLLQIYQT 301 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L+ ++ C+ ++ +N L + E++ R +G I L Sbjct: 302 ELSDTGQIAQFCQRCLTKLSDWHNALF----SSGESDWRLQLGNKS-----IALASWDLL 352 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 L L +L L + DI A+ + E KL + + A Sbjct: 353 AELTALQKLLLVHVGRSELLDDI------------AVKLTELNHKLNQFFNCDNPQAAYS 400 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 ++ G + I ++ + ++ L+ + I TSATL+ S + G Sbjct: 401 VEF-------GSRFVMLRMSPINIARECQQ-LFVANTSWIFTSATLQVNRSLDHFAQELG 452 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 + + + LDSPF++ Q +PR ++ N++Q + ++ K +E+ + Sbjct: 453 ISDA---KAHILDSPFDYPRQALFCVPRQL--GNVTNQQQALKQLVDVCVKAIEAAQGR- 506 Query: 537 MLVLFASGRAMQR-FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 +LF S + +++ L T + LLVQG + L+ R +VL+G SF Sbjct: 507 TFILFTSHKMLEQTALALRTRTQYPLLVQGQAGKQSLLTKFR----QLGNAVLLGTSSFW 562 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+D++G LLS V I K+ F D P+ + + PF SLP A L Q VG Sbjct: 563 EGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVG 622 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 RLIR G +++ D R++ + YG+ L++LP + Sbjct: 623 RLIRDEKDCGVLILCDNRIVNRAYGQAFLNSLPPMSRTR 661 >UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXI2_STRM9 Length = 667 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 188/716 (26%), Positives = 313/716 (43%), Gaps = 73/716 (10%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 I Y L DF R Q M + K + + + +EA TG GKTL YLIP I Sbjct: 2 IEKIYNRLYSDY-DFEKRENQINMSKIIKKGIDND--MPVLLEAETGSGKTLGYLIPAID 58 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALAS 129 A E K +V+ST + LQDQI +K+LPLLKK+ + +K+T GR YVC R L Sbjct: 59 FALTEMKNIVISTNTLNLQDQILNKELPLLKKLFGEKMKYTLIKGRNNYVCKRKL----- 113 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 QDL+ DDE + E K G R I +DLW + + Sbjct: 114 -----QDLVMKSDDEKYMDLIEAVKAS-----------LTGDRSDIKYKISNDLWNEIKS 157 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLLV 246 DK S C YY+ C F+++R + + + + NH +++ ++ V PK L+V Sbjct: 158 DKDSTFANKCPYYKSCYFYLSRSKNEHCNIFIVNHHILLLDHIIKQNNNVGLIPKYDLIV 217 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 +DE H+L +V R +S +++ L++ V I + Sbjct: 218 IDEAHNLENVVRKYYSLSFSF-KEVFKIIGMLYSNNVKDIENAGLIGKIIINISENSNHF 276 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 +EL E+ +NI N+Y +A+ EL +++ L + + + + +L Sbjct: 277 LIDELKEIF--FSNINNIY----------YALVELRKKIVRKYTDLNQNGILTKDICDLN 324 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEA----------------QSKLWRLASLAQ 410 +NDL EK S +++ + +N E + L L + + Sbjct: 325 VNDLLEKIFSSNLILKKEVYRLINFLEERDELDKDNLRLFLSSSYNNLEEHLNTLQEIFE 384 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 + W + + + +S + I +I+ SATL NSF Sbjct: 385 LNYEKYIYWMNLDI--DNVFPIINATPYSISKEFGENFIEKIRKVILISATLTVGNSFRY 442 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 ++ G+ + + + S F++ I +P P+ + + + + + Sbjct: 443 IKNSLGIIDSVEEN---IPSEFDYLNNMNIYLPDNLPLPNEIDFNERATKFILDYAE--- 496 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTDLR--LMLLVQGDQPRYRLVELHRKRVANGERSVL 588 K + VLF S + ++ +Y+ L +L+QG+ L+++ +++ E S+L Sbjct: 497 -KNNGKCFVLFTSYKDLKFVANYLNKYSSSLNVLIQGEYEIIELIKMFKEK----ENSIL 551 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY-PFEVQSLPSAS 647 +G SF EG+D++G+ LS V I K+ F D P+V + L LN F+ LP A Sbjct: 552 LGTYSFWEGVDVQGEALSNVIIFKLPFQVPDDPIVSSICYRLNELNSNSAFKEFQLPYAV 611 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVK 703 + Q VGRLIRS G ++I DKR+ K+YGK +L +LP IE + + ++K Sbjct: 612 LKMKQGVGRLIRSKEDKGNIIILDKRIHKKSYGKIILKSLPKGNIEILSIEDILLK 667 >UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterineae RepID=C5VAL7_9CORY Length = 681 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 192/729 (26%), Positives = 299/729 (41%), Gaps = 74/729 (10%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M T L A + A A R Q M VA L E RHLA++A TG GK Sbjct: 1 MTATELLAAAVTALGGA---------TRPGQVAMTEAVATALESE--RHLAVQAGTGTGK 49 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGR 115 +L+YL+P +A A+E + T++VSTA +ALQ Q+ +DLP L + + L F GR Sbjct: 50 SLAYLVPAVAHAQETESTVIVSTATIALQRQLVDRDLPRLAESLEPLLDHKPSFAIMKGR 109 Query: 116 GRYVCPRNL---TALASTEPTQQDLL--------AFLDDELTPNNQEEQKRCAKLKGDLD 164 Y+C + TAL + +P D A +D+ R + + + Sbjct: 110 QNYLCQNKVAQATALEADDPNSGDADGNAGGAQTALVDESELSWLGRHMARIYEWANETE 169 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYYYRECPFFVARREIQEAEVVVAN 223 T G RD + + D WR++S C+ C + C +ARR+ ++ +VVV N Sbjct: 170 T----GDRDSLEPGVPDLAWRQVSVGAKECIGANRCPFGDSCFAELARRKARDVDVVVTN 225 Query: 224 HALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITA---PWYRLQLDLFT 280 HAL+ + + P + ++++DE H L D +TA R Sbjct: 226 HALLAVDAMLDINVL-PDHDVVIIDEAHELDDRITSMATTEIGVTALNMSARRAGKLGAE 284 Query: 281 KLVATCMEQFRPKTIPPLAI-PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG 339 ++ R ++I P RL E L + +L + L Q+ R G Sbjct: 285 GRDEKLIDVAREWEQVMMSIDPGRLTTLPEVLRPTLVALQDGLWQL----QQTIGRAPEG 340 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 E +E +RL+ L L + LS + + Sbjct: 341 EAANEPERHAERLS-LANHLTEQHDAVARILSAFPAHPSLSP---------------DDA 384 Query: 400 SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 + + WA +ER G + + VSD L L+ +++TS Sbjct: 385 TSPEPATPPGSADAPEDVVWAVVDERRGTM---LKVAPLSVSDLLRSRLFD-HNTVVLTS 440 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHI 518 ATL +F+ + GL + D + +PF+ + G + +PR P D E+ + Sbjct: 441 ATLTIGGNFNAMAASWGLPAGSWDH-LDAGTPFDPAKSGILYVPRHVPFPGRDGLHEKTL 499 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHR 577 +EM L LF+S RA ++ + + L +L QGD LV+ Sbjct: 500 SEMYELIM-----AAGGRTLGLFSSRRAAEQATESLRRRLPFDVLCQGDDSMGALVD--- 551 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 R A E + L G + +G+D+ G S V + KI FP D P++ E + R Sbjct: 552 -RFAKQENTCLFGTLTLWQGVDVPGKSCSLVIMDKIPFPRPDDPLLQARKEAADAAGRNG 610 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPE 696 F + A+ + Q GRL+R G V I DKRL+ K YG LL++LP F P+ Sbjct: 611 FMEVAATHAALLMAQGAGRLLRHTTDRGVVAIMDKRLIEKRYGGFLLNSLPPFWRTTDPK 670 Query: 697 VPEGIVKKK 705 V G +K+ Sbjct: 671 VVTGALKRL 679 >UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW Length = 846 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 164/737 (22%), Positives = 284/737 (38%), Gaps = 90/737 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L + + + R Q +++ + +HL EA TG+GK+ +YLIP + +E Sbjct: 140 GTLSQLLKKYEYRQEQTELVEATIEAFNNN--KHLISEAGTGIGKSFAYLIPALLWLKEN 197 Query: 76 QKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 + +V+ST + LQ+QI SKD+P ++ I P +K+ GR YVC + + Sbjct: 198 KTRIVISTNTINLQEQIISKDIPSIIGGIAPSVKYALVKGRNNYVCIKKV----KEGLND 253 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 D F EEQ + DG +LW + D +C Sbjct: 254 HDKFDF----------EEQINFFEDIDHWLNITKDGSITDLGYKPKGELWEMVCCDTDTC 303 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-----SEAVLPDPKNLLLVLDE 249 +R C Y +C F+ R+++ A++++ NH ++ A + + P+ +++DE Sbjct: 304 THRKCEYLEDCYFYKMRKQLNAAQLLIVNHHILCADLSLYAETAGRYSLLPRYTKVLIDE 363 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H+ + A ++ R K L + E +N Sbjct: 364 AHNFENSASSYFGDEGSKNG------------ILKALFYLSRIKKNKRLGVIESINNMLN 411 Query: 310 ELYELIA--SLNNILNLYMPAGQ-EAEHRFAMGELPDEVLEICQRLAKLTEML----RGL 362 E LI + IL+L A + R + + E + C + + E L R Sbjct: 412 EKRALIEKHEYDEILDLINKAHDLTSRVRNVVEDKSKEFITYCHKNIQTKEGLGYKFRIS 471 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE---------AQSKLWRLASLAQSSG 413 EL + + G + L ++L M + + + A K + +AQ S Sbjct: 472 PELVMTSHWQNEG---LKPLREMVLSMTSLVNICDKLYKKFFDIAIEKDFDYEEIAQMSN 528 Query: 414 AP---------------------VTKWAT-REEREGQLHLWFHCVGIRVSDQLERLLWRS 451 A +W R ++G L L +H + V+ L L+ Sbjct: 529 AYLERLKRQLVSLNAAIDYKKDEYIRWVETRLTKKGNLILNWHLTPVTVAKNLNDFLYSR 588 Query: 452 IPHIIVTSATLRSLNSFSRLQEMSGLK--EKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 + + SATL SF+ G EK + L+SPFN+ + ++ I + Sbjct: 589 FDTVAMYSATLTVSKSFNFFSNRLGFDFIEKNKKIEIYLESPFNYEDNARLYIATDMPDV 648 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQ- 564 + D +++ +V +LF S ++ + + + L Q Sbjct: 649 ASDTFNDFTSKVLL----KVCDVTGGRAFILFTSFSSLMNVYENTSEKLKSKNINALAQT 704 Query: 565 GDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI 624 R+ L+++ + N VL G+ SF EG+D+ G L V I K+ F P+ Sbjct: 705 ASIHRHTLLDMFKASSNN----VLYGVDSFWEGVDVAGKNLEVVIIPKLPFAVPTDPISE 760 Query: 625 TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684 +++ F +LP A Q GRLIRS G V + DKRL TK YG + + Sbjct: 761 GRYRYIEENGGNAFLDYALPFAVIKFKQGFGRLIRSKDDRGVVFVLDKRLYTKTYGTQFI 820 Query: 685 DALPVFPIEQPEVPEGI 701 +LP + + + E Sbjct: 821 QSLPNAKVLRGSMREIF 837 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 169/733 (23%), Positives = 299/733 (40%), Gaps = 89/733 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 +P + RA Q +M V L +G L +EA TG GK+L+YL+P + A Sbjct: 259 GPFARSLPGYEFRAGQVRMAQAVTNVL--NQGGQLLVEAGTGTGKSLAYLLPAVLHAVAR 316 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-------------DLKFTAAFGRGRYVCPR 122 +T+VVST +ALQDQ+++KDLPLL++ + + T GR Y+C R Sbjct: 317 GETVVVSTDTLALQDQLFAKDLPLLRRALEAAAEHDPRLADAARFRATVLKGRSNYLCLR 376 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 FL ++ E AK+ L + G R ++ ++ Sbjct: 377 RW---------------FLRQREPFTSRAEALLAAKITAWLAQTE-TGDRAELHLSNEEQ 420 Query: 183 L-WRRLSTDKASCLNRNCYYYRE--CPFFVARREIQEAEVVVANHALVMAAMESEAVLPD 239 L W +++ + +CL C ++R C + AR + A +V+ NHAL+++ + +E+ + Sbjct: 421 LAWAQVAESEGACLPSRCLFHRRNQCFLYRARATAEGAHIVIVNHALLLSDLLAESRVL- 479 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSA---EITAPWYR-LQLDLFTKLVATCMEQFRPKTI 295 P L++DE HHL D A ++ R L LD + E + Sbjct: 480 PSYRHLIIDEAHHLVDEATQQFGFQIAHEDMRELVRRVLGLDHLGRYTGVLGELWSVLAQ 539 Query: 296 PPLAIP------------------ERLNAHCEELYELIASLNN---ILNLYMPAGQEAEH 334 P E L+ H E L+ L+A + + N Sbjct: 540 RPDGSARAVARELGQRLTDLWPRVETLHQHTEMLFHLLAEVAQRHPVENGGYDRQIRITG 599 Query: 335 RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG 394 + V E+ Q + + + + L + + + ++ L Sbjct: 600 ALRQETIWGTVEELGQTVTSHLRTVLSALQWVSHRLEDLP-----AAIRDELSELVTELD 654 Query: 395 MFEAQSKLW--RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSI 452 + E +++ RL + S W T R L + + + V+ L+ +L+ + Sbjct: 655 VLERRARELHGRLQEILFSPRVERVYWLTW--RAQPLSVSLNMAPLDVAPLLQEMLFSRV 712 Query: 453 PHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSID 512 +++TSATL SF +++ GL + + ++SPF++ + + EP Sbjct: 713 DTLVLTSATLTVDRSFDYIRQQLGLADADE---LVVESPFDYASSTLLCLAEDMAEPGEP 769 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQG-DQ 567 ++ + E + LVLF S A+Q + +++L Q D Sbjct: 770 GYQRQVNEALLALLRV----TRGRALVLFTSHSALQAAYRAIKRPLEQEGILVLGQRLDG 825 Query: 568 PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 +LVE + R +V++G + EG+D+ G+ LS + I K+ F PV Sbjct: 826 SPRQLVERLKAR----PATVVLGTNAVWEGVDVPGEALSVLVIAKLPFAVPSDPVFAARC 881 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 E PF+ ++P A Q GRLIRS +G V+ D+R+ T+ YG+ + +L Sbjct: 882 ESYS----DPFQEYAVPQAVLRFKQGFGRLIRSTRDYGVCVVLDRRVTTRRYGQLFVQSL 937 Query: 688 PVFPIEQPEVPEG 700 P +++ V + Sbjct: 938 PPCTVKRVPVAQI 950 >UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 RepID=C7I1U8_THIIN Length = 676 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 175/700 (25%), Positives = 286/700 (40%), Gaps = 82/700 (11%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + + LQE++P + R QR++ VA +A + L EA TG GKTL+YL+P + Sbjct: 25 ALFSPGSPLQEELPQWSVREGQRELAMAVAGAIA--DRAILMAEAGTGTGKTLAYLVPAL 82 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALA 128 +++STA LQDQ+Y+KDLP ++ + + GR YVC L A Sbjct: 83 LH----GGRVIISTATRNLQDQLYNKDLPAARRALGAAVSTCVLKGRSNYVCLYRLQRAA 138 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 ++ + AK D GL +++ + ++ Sbjct: 139 E----------WVHGRHAHAQLRRITQFAKSDARGDLSALSGLEENSALNF------LVT 182 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---PDPKNLLL 245 + +CL +C Y+ C ARRE ++VV+ NH L A + P L Sbjct: 183 STTDNCLGADCPDYKACFVMKARREALASDVVIINHHLFFADLALRGEGVAELLPTADTL 242 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 +LDE H L ++ L +DL ++A ++ + Sbjct: 243 ILDEAHQLAEIGVQFLGARC-----GTAQVVDLSRDVLAGGLQHAKGL------------ 285 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 A + L + L L P + + +LP L L L AE+ Sbjct: 286 ADWQTLSGALERAARDLRLAAPQNPGRLSQPQVLDLPG----WDVALHDLQAQLAHTAEV 341 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 + + M+R + +A S Q+ P +WA Sbjct: 342 LSAHVEAAAEFERL---------MDRCTALHQAFSSWQAAPDPDQTDAPPQVRWADV--- 389 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD-- 483 G HL + ++ L+ + I TSATL SF + GL + G Sbjct: 390 -GSAHLRLQAAPLSIAPAFAALVAQRSQAWIFTSATLSVGGSFRHARAALGLTSEQGGCA 448 Query: 484 ----------RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 R + + SPF++ EQG++++P+ P+ + + +AA Q+ + Sbjct: 449 PVEGGVAPRCRELRVASPFDYAEQGRLLVPQDLPLPNQPGHSESVGALAA----QLATGN 504 Query: 534 HLGMLVLFASGRAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL 591 G VL + RA + + L +L Q D+ + L+ R A+ ++VLVG Sbjct: 505 TGGTFVLTTTLRAAKIIAQTLRALLPGRAVLEQFDESKAALL----ARFASTSQAVLVGS 560 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 QSF EG+DL GD L+ V I K+ F P D P+ + +++ R F S+P A+ +L Sbjct: 561 QSFWEGVDLPGDRLTLVIIDKLPFAPPDDPLTAARLKQIEAEGRSGFADYSMPQAALSLQ 620 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 Q GRLIR+ G +V+ D+RL +G++LL +LP F Sbjct: 621 QGAGRLIRTESDRGVLVVCDRRLTATGWGRQLLTSLPPFT 660 >UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVG8_DICNV Length = 645 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 167/689 (24%), Positives = 272/689 (39%), Gaps = 70/689 (10%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + AL + + R Q + +A+ + E L EA TG+GKT +YL P + Sbjct: 6 SFFSEQGALSSALKGYQVRKEQVHLAETIARQI--ERKSVLCAEAGTGIGKTFAYLFPLL 63 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALA 128 A K ++STA LQ+QI+ D+P ++KI+ + K GR Y+C LA Sbjct: 64 LSA----KKALISTATKTLQEQIFYHDIPFVQKILGNSRKIALLKGRRNYLCYERYEHLA 119 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 P ++++ +L D DG DI + D+ R +S Sbjct: 120 HKPPQNA----------------QEQKYRQLIDDFAVRSKDGDLAQLDIPENHDILRAVS 163 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLLL 245 CLN +C ++ +C AR++ ++A+++V NH L++A + + P+ Sbjct: 164 CTAEQCLNADCPFFAQCFVQKARQKAKDADLIVVNHYLLLADLVLKNDGFAEILPEIETF 223 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 ++DE HHLP + R ++ +++F I L Sbjct: 224 IIDEAHHLPTITRHFSGITLSQRQCHL-------------WLKEFDEAVIEHAPDALTLR 270 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR-GLAE 364 + ++ + L +Y E A + + + Q L KL L+ L Sbjct: 271 HAIKTAQNVMQQFPSSLQIYDERILEMPDLQAHHDFWEIIAAWQQALMKLLSALQPQLPR 330 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 + E+ RL + ++ L + +A S P KW Sbjct: 331 AAVLHTFER-------RLETALNSLDEFLALKDANES---------SPETPEAKWVEVRA 374 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + HL + V + + Q + RS SATL SF+ GL Sbjct: 375 Q----HLVLNRVPVNAALQFGTWIERSDAAWCFLSATLTINQSFTHFCHELGLNASVETL 430 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + A SPF++ +Q + P P N Q+ A + + +LF S Sbjct: 431 YCA--SPFDYPKQALMYQPPQLPNP---NHPQYTESFIAAVLPILRRSQGR-SFLLFTSY 484 Query: 545 RAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 RA++ + + L VQG P+ +L+ ++L+ SF EG+D++G Sbjct: 485 RALKIAEKLLANEEFALFVQGSAPKTKLL----ADFCQTPNALLLATASFWEGVDVRGKQ 540 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L V I K+ F D PV L+ PF +LP A +L Q VGRLIR + Sbjct: 541 LVCVMIDKLPFAAPDDPVSRERHRLLEEQGLSPFMYDTLPQAVISLKQGVGRLIRDQKDY 600 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 G +VI D RL K+YGK L++LP Sbjct: 601 GVLVIGDPRLRQKSYGKIFLESLPRMTRT 629 >UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA Length = 661 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 155/677 (22%), Positives = 276/677 (40%), Gaps = 49/677 (7%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 K L + D+ R Q +M + + G + IEA TGVGK+L+YLIP + E Sbjct: 9 KQLPKLWKDYEVRKEQMEMSQAIESAF--QTGSNWVIEAGTGVGKSLAYLIPSALFSLEN 66 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 + T+VVST +LQDQ+ KD+PL+ + + + A G Y+C R + Sbjct: 67 ECTVVVSTETKSLQDQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVMERGDFG 126 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 ++ + L + Q E G+R D + + W ++ + +C Sbjct: 127 PEMESSLPYFVNWEKQTE----------------SGIRAEYDGFLSNSFWSSVARESDNC 170 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 L RNC + +F+ + + ++A +++ NH L+ + + + L P LV+DE H P Sbjct: 171 LGRNCPNFSSSYYFLEKDKWKKANILIVNHHLLASHLAGDFKLLPP-FSQLVIDEAHVFP 229 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 ++ A L F + + + + I + ++ +L+ + Sbjct: 230 EIVGKAFGSEIRYEFILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASI-SYANDLFRM 288 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 + S + + Q + +L + LE LA L+ L GL LS+ Sbjct: 289 LLSA-----IPLQFNQFSSRHTERIKLDNGALE--DTLADLSSTLEGL-------LSKYK 334 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER-EGQLHLWF 433 D + L L + G + S L + + W + + Sbjct: 335 KDSDDMEEKELALGLEMVAGNLKKVSSF--LTDFRLKTNPNLVFWIEPPPQMAKDPFYYL 392 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRS-LNSFSRLQEMSGLKEKAGDRFVALDSPF 492 + L L+ ++ +++TSATL +F + G E + L+SPF Sbjct: 393 FSQPKNTDEILANTLFPNMDSVVLTSATLSPTAGNFQYFLKEVGTSE---VKTKTLNSPF 449 Query: 493 NHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 + + +P+ +P D + I +++ ++ VLF S + + + Sbjct: 450 QYQTHSLLFVPKQIADPVSDPKRNKID--LSYWITRLLKLSEGDAFVLFTSNKLLSELYE 507 Query: 553 YVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 + +L + Q + ++ + SVL G+ SF +G+D+KGD L V + Sbjct: 508 EIRNLVPYPIFAQTEMGPIAA----KREFLANKNSVLFGVSSFWQGVDIKGDKLRNVIVT 563 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 K+ F PV+ + E ++ + PF +P L Q GRLIRS G V I D Sbjct: 564 KLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCLLLRQGFGRLIRSQSDTGMVSILD 623 Query: 672 KRLLTKNYGKRLLDALP 688 R+ TK+YGK +L +LP Sbjct: 624 PRIHTKSYGKNVLQSLP 640 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 156/702 (22%), Positives = 292/702 (41%), Gaps = 52/702 (7%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 R+ Q +M+ V + + + G+H IEA TG+GK+L Y +P I A++ + +V+ST Sbjct: 260 ARSGQFEMMNLVFQAM--KSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTN 317 Query: 87 ALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDEL 145 LQ Q++ KD+PLL K+ +K + GR Y+ L TQ D++ Sbjct: 318 LLQAQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVV------ 371 Query: 146 TPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYREC 205 + GD+D + + W R+ ++ + Sbjct: 372 -TKLKLLVWLTETTTGDIDEVNLS--------SGGELFWNRMKHTGWFLSEKHDPWLAHD 422 Query: 206 PFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSA 265 + ++ + A++V+ NHAL++ S PK V+DE HH D AR ++ S Sbjct: 423 FYKFNIKQAKNADLVIVNHALLLNDHFSGRETL-PKYAFAVIDEAHHFADSAR--MQGSF 479 Query: 266 EITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLY 325 ++ + L+ L + P L+ +L + + +L + Sbjct: 480 VLSYRKIKYFLNQLGSLEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQ 539 Query: 326 MPAGQEAEHRFAMGELPDE-------------VLEICQRLAKLTEMLRGLAELFLNDLSE 372 + ++ + E ++ VL + + K E L + N+L E Sbjct: 540 LNFARKNLQEVVLVENSEKDAWNDQVYYAAEKVLYLLKESEKNMETLLEQGKREENELGE 599 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 + + +M L + Q+ + +L + +T + ++ + Sbjct: 600 AESA--------FLEEMYAFL--LDWQNMVKQLEQMLHKKSPILTIYLQADKNHSISSIR 649 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPF 492 V + V L + + +I+TSATL F L++ GL+E+ + SPF Sbjct: 650 LKAVLMEVEPTLGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLEEEQIME-KRIPSPF 708 Query: 493 NHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 ++ E +++IP E++ +E+A + + + K + MLVLF + +Q+ Sbjct: 709 DYKENARVMIPDDMPPIKDTPIERYTSELAKYI-RHIAVKTNGRMLVLFTASDMLQKTYY 767 Query: 553 YVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 ++ + + +LL QG K+ ++++L+G SF EG+D+ G+ LS + Sbjct: 768 HMKNEKSLEEYVLLAQGVSAGSA--ARLTKQFQMFDKAILLGTTSFWEGIDIPGEDLSCL 825 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I ++ F P+D P + K F+ SLP A Q GRLIR G V Sbjct: 826 VIVRLPFAPMDDPYTKAQISLRKERGENAFQTYSLPEAVLRFKQGFGRLIRRESDRGIVF 885 Query: 669 IYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 ++D R+ T +GK L+++P PI + + + + + E K Sbjct: 886 VFDNRVDTTKFGKAFLESIPSAPILKGKQADLLEEVSEFFKE 927 >UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepID=A9GFB8_SORC5 Length = 697 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 170/712 (23%), Positives = 267/712 (37%), Gaps = 88/712 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + + R Q M + V + LA E R L EA TG GKTL+YL+P I Sbjct: 14 GPFARGLDGYEDRQGQVAMASAVERALA--EDRILLCEAGTGTGKTLAYLVPAIL----S 67 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 + +VVSTA AL+DQIY+KDLPL+ + + D + G G Y+C R + L ++ Sbjct: 68 GRKVVVSTATKALEDQIYTKDLPLVAEHLRLDPRAALVKGLGNYLCLRRFSELRTSPGAG 127 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 + + ++ + + + +A D LWR +++ + Sbjct: 128 AGIAG--------------RSLPLIEAWAQETEMGDVAELAHLAEGDPLWREVASSSETR 173 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE---------AVLPDPKNLLL 245 L +C Y+ C +R+ + A ++V NH L A + + P + Sbjct: 174 LGASCEYFERCFVTRMKRDSEAARLLVVNHHLFFADLALKMAGARRGFAGAGALPPYDAV 233 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 + DE H L D+A + A + D +A+ + AI + Sbjct: 234 IFDEAHQLEDIATGFFGVRVS-RARVDSMLRDADRAFIASGLADRILGRGEGTAITAVVR 292 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 + L++ +ASL EA A E+L+ RL E Sbjct: 293 ESADALFDRLASL--GGAAGGGDRGEARSPLARDAWSGELLDAYHRLDDHL-------EA 343 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 S S + + Q+ + W R Sbjct: 344 LAAYASANAISEAVQLVGNRAAQLRDDAARIVDPAT-------------NQVTWVEVRGR 390 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS----FSRLQEMSGLKEKA 481 + F + + D L ++ I +++TSATL + S F L+ GL E Sbjct: 391 A----VSFGASPVDLGDMLREHVFERIGAVVLTSATLTTGGSAGAGFRFLRSRMGLDEDV 446 Query: 482 GDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + + SPF++ + PR E + + A+ AA G + Sbjct: 447 SVPVDELEVPSPFDYPTAALLYTPRDLPEATDAAFVERAADRAAELI----GITGGGAFL 502 Query: 540 LFASGRAMQRFLDYVT-----------------DLRLMLLVQGDQPRYRLVELHRKRVAN 582 L S RAM + + LLVQGD P+ L+ +R Sbjct: 503 LCTSIRAMNALAAALRVRLGRAAAVARADGGAPGRQAPLLVQGDAPKGALL----RRFRA 558 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 +VLV SF EG+D+ G+ L V I K+ F PVV ++ PF S Sbjct: 559 ERHAVLVATMSFWEGVDVPGEALRLVIIEKLPFAVPTDPVVAARCTAIEQGGGNPFIAYS 618 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 +P A+ L Q GRLIR+ G V I D+R+ T+ YG+ LLD+LP Sbjct: 619 VPQAAITLKQGFGRLIRARTDRGIVAILDRRIRTRGYGRVLLDSLPDARRTD 670 >UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV0_ANADF Length = 635 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 175/665 (26%), Positives = 262/665 (39%), Gaps = 66/665 (9%) Query: 45 EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII 104 E R+L EA TG GKTL+YL+P + ++VSTA LQ+QI+ KD+PLL++ Sbjct: 2 SERRYLVAEAGTGTGKTLAYLVPAAL----SGRRVIVSTATKTLQEQIWGKDIPLLRERC 57 Query: 105 P-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDL 163 + GR Y C A T +EE +++ Sbjct: 58 GVEFAAAYLKGRSNYFCLARGAEFARAP--------------TFAAREEAALWPRIEAWA 103 Query: 164 DTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVAN 223 + G R D+ W+ LS +C R C Y +C AR +++V++ N Sbjct: 104 RATE-TGDRSEIDLPDQFHTWKDLSATAETCAGRECERYEDCFVTRARALAGQSDVLLVN 162 Query: 224 HALVMAAME----SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYR------ 273 H L A + V P+ ++V DE H + +VA + + Sbjct: 163 HHLFFADLAMRTSRAGVEILPEYDVVVFDEAHAIEEVATEYFGLQISSYRVEELGRDALR 222 Query: 274 ---LQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQ 330 + DL + + E R A+ + L+A + + Sbjct: 223 AVGDRPDLASMMREATGELRRAGERFFQALADGLHASGAGAARGWGARAGGRGRGPRRRE 282 Query: 331 EAEHRFAMGELPDEVLEICQRL-AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQM 389 E E L EVLE C+R A+L L L EL D + R L +++ Sbjct: 283 EDES--VRAPLTSEVLEPCERDQARLDAALEALRELLA-DAEAPPLAQIARRAGELRVEL 339 Query: 390 NRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 M E +A R ++ I V+++L+ L+ Sbjct: 340 AAVTAMKE----------------PSRVYFAEVRGRG----VFLRAAPIDVAEELQARLY 379 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 R +I TSATL + F + GL + PF+ Q IV P EP Sbjct: 380 RRTDTVIFTSATLAAQGRFDYFRRQVGLAPEFDVDEARFPGPFDFPRQAAIVTPPTVPEP 439 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPR 569 + AA + + VL S R M + DL +L+QG++P+ Sbjct: 440 NAPGFLDA----AAGTIRALAEVTGGRAFVLCTSNRNMHALHGALRDLPYQVLLQGERPK 495 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 RL+E R E SVL SF EG+D+ GD LS V I ++ F P PVV Sbjct: 496 ARLLEAFRA-----EPSVLFATASFWEGVDVPGDALSLVVIDRLPFAPPGDPVVAARLRA 550 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 L++ R F +P+A+ L Q GRL+R+ G G V I D+RL+TK YG+ L LP Sbjct: 551 LEAEGRDGFSELQVPAAALALRQGFGRLVRTRGDRGLVAILDRRLVTKGYGRAFLATLPR 610 Query: 690 FPIEQ 694 P+ + Sbjct: 611 CPVLR 615 >UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP2_SALAI Length = 699 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 186/709 (26%), Positives = 283/709 (39%), Gaps = 85/709 (11%) Query: 20 EQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 +P R Q++M + ++ E HL ++A TG GK+L+YL P + + + Sbjct: 56 NAVPGGAARPGQQEMTTAIEAAVSARE--HLLVQAGTGTGKSLAYLAPALTV----DGPV 109 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQ 134 VVSTA +ALQ Q+ DLP L + L F GR Y+C L EP Sbjct: 110 VVSTATLALQSQLVDHDLPRLADAVEPLLGRRPTFAVLKGRHHYLCLARLDNATEEEPG- 168 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKG--DLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 L T E + +++ D G RD D +DD WR +S Sbjct: 169 DTLFDQPTPSGTTWLGEAGRLGRQVQRLRDWAEKTDTGDRDELDPGVDDQAWRLVSMPAR 228 Query: 193 SCLNR-NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGH 251 C+ C + EC +R +EA++VV NH+L+ M + + P + LLV+DE H Sbjct: 229 ECVGAARCPFGAECFADASRARAREADIVVTNHSLLAVDMLAGRHI-VPPHQLLVVDEAH 287 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 L D A Q +L +L+ + RP P A E L + L Sbjct: 288 ELADRVSSA-------------AQAELVPELIDRSTRRARPLLRPETA--EALTTAGDAL 332 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM-LRGLAELFLNDL 370 +A PAG R G LP + E C L T L + E+ +D Sbjct: 333 AVGLAEA--------PAG-----RLTAG-LPAPLQEACTLLDAATRAALDAIGEIKADD- 377 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 D VR ++ ++ G + RL A W R + G+ Sbjct: 378 ------PDPVRKQQVKAVLDELSGTAQ------RLLDEADHD----VAWVERNDVTGRRA 421 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK--------AG 482 L + V+ L L+ ++ TSATL F + GL+ G Sbjct: 422 LV--VAPLSVAGTLATHLYED-RTVVATSATLTLGGRFDSVARALGLEAPAEAPVTSGPG 478 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + + + SPF++ QG + + PS + + L LF+ Sbjct: 479 WQSLDVGSPFDYARQGILYVAAHLPRPSASGLPDAAGAELLGLVEAL----GGRTLGLFS 534 Query: 543 SGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 S RA Q+ + + L +L+QG+Q LV +R + S L G+ S +G+D+ Sbjct: 535 SRRAAQQAAELLRARTDLPVLLQGEQALPLLV----RRFREEQSSCLFGVMSLWQGVDVP 590 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD V I ++ FP D P+ + + F S+P A+ L Q VGRLIR+ Sbjct: 591 GDACQLVVIDRLPFPRPDEPLAAARAAAVDADGGSGFAAVSVPIAAVRLAQGVGRLIRAT 650 Query: 662 GCWGEVVIYDKRLLTKN-YGKRLLDALPVF-PIEQPEVPEGIVKKKEKT 708 G G V + D RL T YG L +LP F +P+V G +++ + Sbjct: 651 GDRGVVAVLDSRLETARGYGPFLRRSLPPFWYTTRPDVARGALERLARA 699 >UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NN01_GLOVI Length = 719 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 163/703 (23%), Positives = 272/703 (38%), Gaps = 88/703 (12%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+ ++ ++ + +P + R PQ M V + A E + EA TG GK Sbjct: 62 MSPYTRQMISLSDAFEDVARVLPGYEVRQPQLDMARAVERGFA--ERIAVVAEAGTGTGK 119 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 + S L+P I K +V+STA +ALQ+Q KD+PLL+K +P + GR YV Sbjct: 120 SFSALVPAIL----SGKRVVISTATIALQEQYLYKDIPLLQKALPVRFEARLVKGRSHYV 175 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 R + + G + Sbjct: 176 SKRRWSESLLAPG------------------------ITWLREWYEQTESGDLADLPTSP 211 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD 239 ++W + +DK CL C ++ C +F +RR + +A++++ NHAL++ S + Sbjct: 212 PSEIWDDIRSDKDDCLREKCPHFDSCFYFESRRSLGQAQILITNHALLLIDRASHGQIL- 270 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P LLV+DE H + A AL ++ + ++ +QF I Sbjct: 271 PDFDLLVIDEAHQFAEYATRALTLTLSNFG---------MGRTLSRIKKQFPNLGIA--- 318 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 R A +E++ + + Y P ++ + +L + L Sbjct: 319 -LARAEAEANAFFEVLLTEAHQTRRYNLD-------------PAMADDLSAAVVRLLQSL 364 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + L N SE ++ R+ R ++ L +E ++ G W Sbjct: 365 KEL-----NLGSEDNLETNVARMRR--DRLVETLTGYEGNLRVLA------EPGENWVNW 411 Query: 420 ATREE-REGQLHLWFHCVGIRVSDQLERLL-WRSIPHIIVTSATLRSLNS--FSRLQEMS 475 + R G ++ +C + V+ L + P + SATL + + F + Sbjct: 412 VEYQTTRGGGTNVALNCTPLDVAPPLGQWFSHPDGPTAVWMSATLSTAGADPFDFFRRQV 471 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 GL + + SPF++ QG + +P +P N+ + +AA K V + Sbjct: 472 GLPAGTAEERI-FASPFDYPSQGLLYLPTHLPDP---NDASYANAIAAEIEKLVNFSEGR 527 Query: 536 GMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 VLF S + M++ + L Q P+ RLVE R + VL SF Sbjct: 528 -AFVLFTSLQQMKQVYALLEAKLLWPAQHQEQMPKRRLVEWFR----TVKNPVLFATASF 582 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP---FEVQSLPSASFNLI 651 EG+ ++G LS V I +I F V E L + F+ +LP A L Sbjct: 583 WEGVSVEGPQLSLVVIDRIPFQSPGDIVYDARCELLSRTSGDRWAWFDRLALPYAQLRLK 642 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 Q GRL+R+ G V I D R+ K YGK +L +LP + + Sbjct: 643 QGAGRLVRTRTDKGIVAILDPRMHRKAYGKTILKSLPPMQVSR 685 >UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3_GORB4 Length = 699 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 186/733 (25%), Positives = 285/733 (38%), Gaps = 105/733 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M + VA + + G HLA++A TG GK+L+YL+P I A + +T+VVSTA +A Sbjct: 23 RDGQVTMASAVAHAI--DTGEHLAVQAGTGTGKSLAYLVPAIRHAVDSGRTVVVSTATIA 80 Query: 88 LQDQIYSKDLPLLKKII-----PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ +DLP L + + F GRG Y+C + A + EP + D Sbjct: 81 LQRQLIERDLPRLAGALKGPLGREPTFAILKGRGNYLCLNKIHAGTADEPDTE----LFD 136 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYY 201 E R + D +T G RD ++D WR++S CL NC Y Sbjct: 137 PFELSRTGREVTRLREWSSDTET----GDRDDLTPGVNDRAWRQVSVTARECLGAANCSY 192 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 +C VARR + +VVV NHAL+ S A + P++ ++++DE H L D Sbjct: 193 GEDCFAEVARRRSAKVDVVVTNHALLSIDATSPASIL-PEHDVVIIDEAHELVDRITSV- 250 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 +AE++A L KLV + L A E+ EL+A + Sbjct: 251 -STAEVSAATIALLARRCGKLVD-------------EETVDALEAAGEQFGELLADAPHR 296 Query: 322 LNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR 381 + +PA + + L D + + + + ++ + S + Sbjct: 297 QWMSLPASAAS----VLVALRDRLWQTRTSIGPIR------MSGAADESAAAARSAALTS 346 Query: 382 LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA----TREEREGQLHLWFHCVG 437 L L + R LG F+ + R W T H Sbjct: 347 LDELHDTIVRLLGAFDEPDESKR----------RDVVWVAEERTSRSPSADTRPVLHIAP 396 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK------------------- 478 + V L L+ +I+TSATL SF L GL Sbjct: 397 LSVGGLLRATLFAQ-STVILTSATLAIGGSFDALAATWGLPASGRGADTPAVDAPAGAGA 455 Query: 479 ---------------EKAGDRFVALD--SPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAE 520 ++ R+ LD SPF++ + + R P D E+ + E Sbjct: 456 NPVSDVTASGKAVPRDEQRVRWTGLDAGSPFDYPRSAILYVARHLPRPGRDGIAEKTMTE 515 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKR 579 +A L LF+S RA + + + + +L QG+ LV +R Sbjct: 516 LAELI-----DAAGGRTLGLFSSMRAAKEAAEAIRERCDHPVLCQGEDTTSSLV----RR 566 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 R+ L G S +G+D+ G LS V I +I FP D P++ + + F Sbjct: 567 FTEDPRTCLFGTLSLWQGVDVPGPSLSLVVIDRIPFPRPDDPLLTARQRAVDARGGNGFL 626 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVP 698 + A+ L Q GRL+RS G V + D RL T YG L+ +LP F P Sbjct: 627 SVAANHAALLLAQGAGRLLRSVDDRGVVAVLDPRLATAGYGGYLMASLPPFWRTTDPATV 686 Query: 699 EGIVKKKEKTKSP 711 + + KT + Sbjct: 687 RSALARLTKTTTA 699 >UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C098_XYLCX Length = 696 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 169/707 (23%), Positives = 265/707 (37%), Gaps = 85/707 (12%) Query: 31 QRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQD 90 Q M +V + + +EGRHL ++A TG GK+L YL+P + A + ++VSTA +ALQ Sbjct: 40 QHAMALEVVEAI--DEGRHLLVQAGTGTGKSLGYLVPAVRHAVVADERVIVSTATLALQR 97 Query: 91 QIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRN-----------LTALASTEPTQ 134 Q+ ++DLPL+ + + G Y+C L L P + Sbjct: 98 QVITRDLPLVADAVAPQLPRPPRIALLKGWHNYLCLHKTGGGYPVDDATLFDLPGITPGE 157 Query: 135 QDLLAFLD-------DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + ++ + ++ +R + D G RD + D WR++ Sbjct: 158 SATEHPAEAPGRARREDGAASLADQVRRLHAWAHETD----SGDRDELVPGVPDRAWRQV 213 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 S CL + C EC AR +EA+VVV NHA++ A+ + P++ ++V+ Sbjct: 214 SVTSLECLGQRCPLLAECFPERARAAAREADVVVTNHAMLGIAVSGSPGVL-PEHGVVVV 272 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H L D A A + +T T R A L+A Sbjct: 273 DEAHELADRATSAATVDLSLT----------------TIEHAARLARRHAAAETTALDAA 316 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 +EL LIA P G + R A+G + D + E+ R Sbjct: 317 AQELGSLIAQAPAGS---FPLGLPEDLRTAVGAVRDALRELLTR------------TKPD 361 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 +LQ+ A+ + ++ P W G Sbjct: 362 PPQGGAAPDGGAKMAQSAVLQVYEVAERMAAEDSSSDVLWCSRPGDGPGAGW-------G 414 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL----KEKAGD 483 H + V+ + L I TSATL F + GL + Sbjct: 415 DGVSRLHAAPLHVAGLIRAGLLAETTG-IFTSATLALGGQFDAVAGSLGLGRTDDDGGRW 473 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNE-EQHIAEMAAFFRKQVESKKHLGMLVLFA 542 R V + SPF++ QG + + R P D + + E+A L LF+ Sbjct: 474 RGVDVGSPFDYPRQGILYVARHLPAPGRDPATDAQLDEIAGLI-----EAAGGRTLGLFS 528 Query: 543 SGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 S RA + + + L + +L QGD LV ++ A + L G S +G+D+ Sbjct: 529 SRRAANAVAEAMRERLDVPVLAQGDDQLPTLV----RQFAQDPATCLFGTISLWQGVDVP 584 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 G V I +I FP D PV ++ F S A+ L Q GRLIR+ Sbjct: 585 GPACQLVIIDRIPFPRPDDPVKAARARAVEKAGGNGFMAVSATHAALLLAQGAGRLIRAT 644 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVPEGIVKKKEK 707 G V + D RL T YG L ++P F P + +++ Sbjct: 645 EDRGVVAVLDPRLATARYGTFLTRSMPNFWPTTDGRIVREALRRLAT 691 >UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD62_RHOM4 Length = 673 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 181/718 (25%), Positives = 297/718 (41%), Gaps = 86/718 (11%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 AL ++ L++Q P F R QRQM V + +A EG AIEA TG GKT YL Sbjct: 8 ALWGRVRELLARLEQQ-PGFELRPGQRQMAETVVRAIA--EGLPAAIEAGTGTGKTFGYL 64 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNL 124 IP + + ++VST+ ALQ+Q+ KDLPLL K++ + + GR Y+C + Sbjct: 65 IPALCA----EARVLVSTSTKALQEQLVHKDLPLLGKLLDRPISWALLKGRQNYLCRLKI 120 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + A E ++E + +L DG + + L Sbjct: 121 ESGAQEERP------------VFETRDEAEAFRRLLEWARRSDTDGDLEQFPGRVTPALR 168 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-----ESEAVLPD 239 ++ D C R C +Y C ARR + +VVV NHAL++ + A+ Sbjct: 169 ELVTMDADGCGGRQCPFYDTCFLMEARRRAERVDVVVVNHALLLQDLMLRARSGGALYLL 228 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P+ +LV+DE H L ++A AL + +E+ R + + Sbjct: 229 PEAEVLVIDEAHRLEEMALGALSVYIS-----------------PYRVERLRRQALRLPG 271 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 I R A E L + L + + A A+ + +L + R L +++ Sbjct: 272 IDHRTRAELEALGLVADELKRQADTALAGRPAAPLTEALSVV---LLNLRDRAGVLGDLV 328 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 L L R ++ + R ++ WR + A + Sbjct: 329 GQTMRLQLQRFGGSAQQELQARYEAVLRGLQRLAADAGVITERWR------AQAAEHVLY 382 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS--------------- 464 RE R H C + L+++L+ + P ++ TSATL + Sbjct: 383 VQRERR----HPVVICQPLDAGGTLQQVLFEAFPTVVCTSATLTTLAQPLRRRAAAGEAS 438 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV--EPSIDNEEQHIAEMA 522 F+ + +G E+ + + + +PF++ Q + +P +P+ + + Sbjct: 439 DGPFAYFRRRTGFPEEGLE--LIVPAPFDYRRQALLYLPPDPARLDPTRIRDARTQQAYE 496 Query: 523 AFFRKQVES---KKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKR 579 +V++ LVL S R M+R + + + +LVQG PR RLV + + Sbjct: 497 EALIGEVQALVAASRGRALVLTTSLRMMERLAEALQECGYPVLVQGSAPRARLVRQLKAQ 556 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 SVLV ++F EG+D+ G+ LS V I ++ FP + P E FE Sbjct: 557 -----ASVLVATRAFWEGVDVPGEALSLVVIDRLPFPGREDPYWQARYE---QAGDDWFE 608 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPE 696 +++LP A L Q GRLIR+ G V + D RL TK YG+ +LDALP +++ + Sbjct: 609 LEALPQALLTLKQGFGRLIRTRTDRGVVALLDGRLQTKYYGRWILDALPPARRVQRID 666 >UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB00_9BURK Length = 667 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 180/716 (25%), Positives = 288/716 (40%), Gaps = 78/716 (10%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 A++ + L + +++PR Q+ M A VA + ++G L +EA TGVGKT +YL+P Sbjct: 10 AEVFSPRGLLAGAVAEYLPRKGQQDMAAAVAGNI--QDGGVLVVEAGTGVGKTFAYLVPA 67 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + + +++STA ALQDQ++++D+P L +I+ ++ GR YVC L Sbjct: 68 LL----SGQKVLLSTATKALQDQLFTRDIPELLEILKIPVRVALLKGRSSYVCLHRLANA 123 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + Q L Q E A GD+ + L + Sbjct: 124 RHSGILQSAA------PLRLLGQVESWVTATRTGDVSEVP--------ALEESQQLLPLV 169 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA---MESEAVLPDPKNLL 244 ++ + +C C Y+EC + ARR+ A+VVV NH L A ES P Sbjct: 170 TSTRENCTTSKCPRYQECHLYKARRDAMAADVVVINHHLFFADSNVRESGVAELLPTVNA 229 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 +V DE H L D+ L L+L +V C++ R Sbjct: 230 VVFDEAHQLNDIGVQFLGRQWS-----TLQLLNLGRDVVFVCLQWARGM----------- 273 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 A+ + L E + + L R L E L +L +L+ A Sbjct: 274 -ANWQLLVEQLEMAVVDMQLVCQESAANTPRLPWQALVPEGLSPGLWERRLRRLLQAHAT 332 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 L ++ L + L A + + +W Sbjct: 333 LLQALQGVADAHPELAALAERASVLKDHLDRA------------ALPAEDGLIRWM---- 376 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIP-----HIIVTSATLRSLNSFSRLQEMSGLKE 479 + L F + +SD + + ++ TSATL + + +GL Sbjct: 377 -DNGTRLRFVESPMDISDAMRSKVTGALEAGSRVSWTFTSATLGPGSDLAWFVNSAGLH- 434 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 G + ++SPFN+ Q + +P PS N +A +AA + + +V Sbjct: 435 --GANVLKVESPFNYEHQAALYVPGAIPAPSHPNHGTRVAALAAEGAEIL----GGRTMV 488 Query: 540 LFASGRAMQRFLDYVTDL-----RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 L + RAM+ + + L + +LVQG+ + L+E ++R G VLV SF Sbjct: 489 LTTTLRAMRLIGETIRKLLPPHLDMAVLVQGESSKRELLERFQQR--EGLGCVLVASASF 546 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+ G L + I KI F P D P++ + + F LP A+ L Q V Sbjct: 547 WEGVDIPGRSLLLLLIDKIPFAPPDDPLLQARCKQVDEAGGSSFNEVQLPMAAVALRQGV 606 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 GRLIR G +V+ D RL + YG++LL ALPV I + + + + K TKS Sbjct: 607 GRLIRRESDRGVLVVCDVRLRSMGYGRKLLSALPVMRIVKDDT-QFQAELKALTKS 661 >UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus RepID=C2BW38_9ACTO Length = 711 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 275/707 (38%), Gaps = 80/707 (11%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M A V +TL G LA++A TG GK+L YL+P + E +V+STA +A Sbjct: 55 RPGQAAMAAAVERTL--HSGGKLAVQAGTGTGKSLGYLLPALLYCLHEDARVVISTATLA 112 Query: 88 LQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ QI +KD PL + + + L+ G YVC L E ++ DL + ++ Sbjct: 113 LQSQIITKDAPLAVEAVQNVTGSALRVEVLKGWQNYVCLHKLN--GGYEGSEDDLFSTME 170 Query: 143 DELTPNNQEEQKRCA--------KLKG---------DLDTYKWDGLRDHTDIAIDDDLWR 185 D + A +++G + G RD I WR Sbjct: 171 DSPFSGIAGSGETTAGPGARTTRQMQGFAAETKRLYEWARETTTGDRDEAPRGITARSWR 230 Query: 186 RLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLL 245 ++S C+ C + EC AR + +A++VV NHA++ + P P + Sbjct: 231 QVSLSSLECVGEKCPFRSECFQVSARDKAAQAQIVVTNHAMIGLEAAGKQN-PLPPCEAI 289 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 ++DE H L + R + S E +A L + E+ + I + L Sbjct: 290 IIDEAHELSERVRS--QASTEFSANMLASCAKAAASLGVSGSEELAQQAIMLGVALQNLE 347 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI-CQRLAKLTEMLRGLAE 364 + RF E+P V E L+ L L L+ Sbjct: 348 ---------------------------DSRFT--EMPAAVAECRMLALSPLKTALTELSA 378 Query: 365 LFLNDLSEKTG-SHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 D G D ++ + L E + + W TR Sbjct: 379 KAGADTESTGGQRADAAKIAVAKAALTSLLDTLETMT-------PESVANGETILWLTR- 430 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK-EKAG 482 R+G + + V+ +L LW II TSATL+ +F+ L GL+ + Sbjct: 431 GRDGDQEPRLYTAPLDVAGKLANRLWNE-HAIIATSATLKLGGTFAPLMHKMGLQLDTPK 489 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + + SPF H QG + + R P+ + G L LF+ Sbjct: 490 PETLDVGSPFRHDRQGILYLARDLPAPTRGEHPDVFWNRLVDLVE----ASGGGALGLFS 545 Query: 543 SGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 S + +R + + + L ++VQG+ LV+ R+ + L+G S +G+DL Sbjct: 546 SRKMAERAGEVLRERTDLPIMVQGEDSMAALVKDMRE----DASACLMGTLSLWQGVDLP 601 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 G+ V I +I FP PV+ + +K F SL A+ L Q GRL+RS Sbjct: 602 GNTCRLVLIDRIPFPVPSDPVIEARCDAVKRAGGSDFMEVSLTHAALLLAQGTGRLLRSA 661 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEK 707 G V + D RL T YG L +LP +P E +V +++ +K Sbjct: 662 TDRGVVAVLDSRLATARYGGFLRASLPPLWPTEDSQVVLDALRRLQK 708 >UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP Length = 698 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 176/726 (24%), Positives = 289/726 (39%), Gaps = 82/726 (11%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 L A++ A LQ+ + R Q QM VA + L EA TGVGK+L+ Sbjct: 20 APELVARVFAEGGWLQDAL-QLEHRPEQEQMGRAVAAAFRDDAP--LLFEAGTGVGKSLA 76 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII---------PDLKFTAAFG 114 YL+PGI A ++ + L+VST ++LQ+Q+ +KDLP+ +++ D K T G Sbjct: 77 YLVPGILHAIDQSRQLIVSTHTISLQEQLETKDLPICRRLFRSNPALARYADFKATVLVG 136 Query: 115 RGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDH 174 + Y+C L + T +E +R A G +T GLR Sbjct: 137 KSNYLCTTRLAHALADRATL----------FADAEYDELQRIAAWAGKTET----GLRHE 182 Query: 175 TDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE 234 ++W ++ D +SC ++C +C + AR ++ A V+V NHAL+ A + + Sbjct: 183 LRPPPRPEVWDVVNADSSSCSRKHCD-CEKCFYQRARARLRAANVIVVNHALLFALINAG 241 Query: 235 AVLP----------DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 + +VLDE H +PDVA + +S + R L+ Sbjct: 242 GAQAHGATTDARGVLFPDDFVVLDEAHTVPDVATENFGLSLS-SYGVERALKYLYNPRTQ 300 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 + + R + + L+A + ++ IA N L P R E + Sbjct: 301 RGLLRKRGGAEAQQLVLDALDA-SRQFFDFIA---NSLLTPRPV-----VRVREPEAAEP 351 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 +L+ L L +L LA+ +R+ L + L + Sbjct: 352 LLD--GPLTALHRLLGKLADKLDEGRERDELLEQKLRIKSLQAGVTEWLTL--------- 400 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 WA R R+ Q + I V+ +L + L+ ++ TSATL Sbjct: 401 -------GDPGHVYWAERSGRK-QTIVTLRSAPIDVAPELRQHLFGCNTSVVCTSATLAM 452 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 + G + R VA+ SPF+ ++ + PS + + + Sbjct: 453 GGEIAPFAARIGADDA---RAVAVKSPFDFEHHMRVYVATDVPLPSPQEARLALDALTDY 509 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQG-DQPRYRLVELHRKR 579 R E + G LVLF S M+ + ++QG + R L + R Sbjct: 510 IRFCTERVRG-GSLVLFTSYADMRAIATTLEPVYRAAGRPFMMQGAELSRTELAQQMRH- 567 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 +VL G SF G+D+ GD L+QV I ++ F P P+ + ++ PF Sbjct: 568 ---LGNAVLFGTDSFWTGVDVPGDALAQVIITRLPFDPPTHPITEARCDHIRDRGGNPFN 624 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP---VFPIEQPE 696 +LP A Q VGRLIR+ G + I D R+L K+YG+ ++ LP + + + Sbjct: 625 ELTLPDALIKFRQGVGRLIRTATDRGLITILDSRVLAKSYGRLFVECLPNPNFMRLSRRD 684 Query: 697 VPEGIV 702 E + Sbjct: 685 REERFL 690 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 166/714 (23%), Positives = 294/714 (41%), Gaps = 70/714 (9%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ V +E H AIEA TGVGKTL YL+P IA E +V+ST Sbjct: 259 RNQQIKMMDAVYDYFTSDETSHFAIEAATGVGKTLGYLLPLAYIASVEN-PVVISTYTTL 317 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 LQ Q+ KD+ L I+P ++ + Y+ + EP Q + +L Sbjct: 318 LQKQLLDKDIVQLNTILPFTVQAAILKSKNHYIHLTKFEEVLK-EPVDQKVEVIYQMKLL 376 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 E + GDLD + W ++ +Y E Sbjct: 377 TWLTETE------TGDLDELNLTNY--------NHLFWNKVRHRGWLTRPEEDRWYDEDF 422 Query: 207 FFVARREIQEAEVVVANHALVMAAM-ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSA 265 + A+ +I+ A V++ NH+ + + E LP L++DE HLPDVA +A S+ Sbjct: 423 YVHAQHKIKHASVIITNHSFLCHDLNRKEKELPSIGK--LIVDEAQHLPDVAMEA---SS 477 Query: 266 EITAPWYRLQLDLFTKL-------VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 EI + Q+ + + + T ++ E + + L + ++ Sbjct: 478 EIFGYYRMQQIIKLIGRASEEKSFLGRITQLSQQLTKIEVSYIENMEMNIFSLEDELSDF 537 Query: 319 NNILNLY----------------MPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 N L LY + +E A+ + +VL + ++ L Sbjct: 538 INQLLLYCKNTAGNKHSQQEQMDIQFNRETHWNLALKKASKKVLTLMNEISYLG------ 591 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 E+ L+E+ R L + FE+Q ++ ++ Q + W + Sbjct: 592 YEVVNQGLNEQHQLTQKER--YLFEDFFDVISTFESQKDIF--YAVFQENEENEVTWFSY 647 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 +E+ + + S ++ L P+I+ T ATL SF+ + G + Sbjct: 648 KEKSPKNSFTIKRSKVDSSKFIKEKLVDKTPYILYTGATLEINQSFNYFETQLG---EEN 704 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + + ++SP+++ +Q ++ +P+ ++++++ + +E+ +VLF Sbjct: 705 LKELIIESPYDYKKQARLWVPKELKPIKGLSKKEYVHMVVEQVGNIIENSV-ENTMVLFN 763 Query: 543 SGRAMQRFLDYVTDLRL----MLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 S +Q + + LL QG R R++ KR +L+G SF EG Sbjct: 764 SYEMLQEVYFSLQQNPVASGRELLAQGFSGSRDRML----KRFFRSTGGILLGADSFWEG 819 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +DL G LS + I ++ F D P V + +L+ + PF + SLP A+ L Q +GRL Sbjct: 820 VDLPGKSLSIIVITRLPFESPDRPFVKAKHRYLEQKHLNPFTIDSLPKATLRLKQGLGRL 879 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKS 710 IRS G +++ D RL+ +YGK+++ +LP PIE+ K + + Sbjct: 880 IRSEKDKGVMIVLDNRLIQTSYGKQIVSSLPKGLPIEEVATKNMGEKLRHFLNT 933 >UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_9ACTO Length = 713 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 191/745 (25%), Positives = 287/745 (38%), Gaps = 121/745 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 +P R Q+QM + +++A G HL ++A TG GK+L+YL P + + +V Sbjct: 33 AVPGGAARPGQQQMAEAIERSIAS--GEHLLVQAGTGTGKSLAYLAPALTV----DGPVV 86 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQ 135 VSTA +ALQ Q+ DLP L + + F GR Y+C L + EP Sbjct: 87 VSTATLALQSQLVEHDLPRLADAVEPVLGRRPTFAVLKGRHHYLCLARLDSSVEDEPDDA 146 Query: 136 DLLAFLDDELTPNNQEEQKRCAK---LKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 A E R K D G RD D +DD +WR +S Sbjct: 147 LFDAPHSGNGGTKWLGEAGRLGKQVQRLRDWAEETATGDRDELDPGVDDQVWRSVSMPAR 206 Query: 193 SCLN-RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGH 251 C+ C + +EC +R +EA++VV NH+L+ M + + P + LLV+DE H Sbjct: 207 ECVGASRCPFGQECFAEASRARAREADIVVTNHSLLAVDMLAGRHI-VPPHRLLVVDEAH 265 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 L D A Q +L +L+ + RP P +A ERL + L Sbjct: 266 ELADRVSSA-------------AQAELVPELIDRSTRRARPLLRPDVA--ERLTEAGDAL 310 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM-LRGLAELFLNDL 370 +A PAG R G LP + E C L T L G+ ++ +D Sbjct: 311 AVGLAEA--------PAG-----RLTAG-LPPALREACTLLDSATRAALEGIGDVKADD- 355 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 D VR + ++ E + RL A W + + + Sbjct: 356 ------PDPVRKQQAKAVLD------ELSTTAQRLLEEADHD----VAWVEKPDNGSRRA 399 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK------------ 478 L + V+ L L+ ++ TSATL F + GL Sbjct: 400 LV--VAPLSVAGTLATHLYDE-RTVVATSATLALGGRFDTVARALGLDAPPPAPPSPAAA 456 Query: 479 --------------------------------EKAGDRFVALDSPFNHCEQGKIVIPRMR 506 E G + + SPF++ QG + + Sbjct: 457 AIATAAAAGRSPVTPVAAAEGSRASVGTVPATEGPGWSSLDVGSPFDYARQGILYVAAHL 516 Query: 507 VEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQG 565 PS+ E + + L LF+S RA Q+ + V L +L+QG Sbjct: 517 PRPSVSGLPGPAGEELLALVEAL----GGRTLGLFSSRRAAQQAAELVRARTDLPVLLQG 572 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 ++ LV +R S L G+ S +G+D+ GD V I ++ FP D P+ Sbjct: 573 EEALPLLV----RRFREVRESCLFGVMSLWQGVDVPGDACQLVVIDRLPFPRPDEPLAAA 628 Query: 626 EGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN-YGKRLL 684 + + F S+P A+ L Q VGRLIR+ G G V + D RL T YG L Sbjct: 629 RAAAVDAGGGSGFAAVSVPIAAVRLAQGVGRLIRATGDRGVVAVLDSRLETARGYGPFLR 688 Query: 685 DALPVF-PIEQPEVPEGIVKKKEKT 708 +LP F +PEV G +++ K+ Sbjct: 689 RSLPPFWYTTRPEVARGALERLAKS 713 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 160/730 (21%), Positives = 281/730 (38%), Gaps = 69/730 (9%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 + E + PR Q+ M ++V + + +L +EA TGVGK+++YL+P Sbjct: 340 FDARGVVGEMYAGYEPRMEQKIMASEVLRAFS--TSTNLVVEAGTGVGKSMAYLLPSAMA 397 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRGRYVCPRNLTA 126 A + V+T AL DQI K+LPLL + DL++ A G Y C + + Sbjct: 398 ALRNGIPVGVATKTNALLDQIVYKELPLLHDALAAKGFGDLQYVALKGFRHYPCLLRIDS 457 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + ++ + + + L G L + D + ID + R Sbjct: 458 VMRDGVHDVNV-----------SGRDISQAPSLAGMLSFIEQTEYDDIDGLKIDYRVLPR 506 Query: 187 --LSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL 243 ++T+ CL R C +Y C +R++ + + +VV NH+L S+ L PK Sbjct: 507 YAVTTESRDCLRRKCPFYGTYCFVHGSRKKAERSHIVVTNHSLFFRDASSDGSLL-PKAP 565 Query: 244 LLVLDEGHHLPDVARDALEMS---AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL-- 298 V+DE H AR AL +S +E+ RL D + +E+ P+ L Sbjct: 566 FWVVDEAHGAEAEARRALSVSLDASEMLRLSRRLASDEGARNPFVRLERRAPECEAVLPE 625 Query: 299 ------AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP--------DE 344 + E+ ++ AS + + + + R+ + +L D Sbjct: 626 ASTLFFGLTEKAKKRGKDFAVAAASFAHGMKDLSACATQQDRRYDVFDLWINDDVRACDA 685 Query: 345 VLEICQRLAKLTEMLRGLAEL---FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSK 401 +E+ ++ ++ E LA + L E G D+ R + A + +S Sbjct: 686 FVELVKKASQFREAAERLASSGSELVAFLEETDGLGDVQR--------DIATIAIDVKSM 737 Query: 402 LWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSAT 461 L ++ ++ A + + + I V +L++ L+ I+ SAT Sbjct: 738 LQACEAIMETPDRNYVYSAHVSRKPEHVAERLEAMLIDVGQELDQTLYERTRSIVYASAT 797 Query: 462 LRSLNSFSRLQEMSGL--KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 L + FS GL A L S ++ ++ + +P + ++ Sbjct: 798 LSVGHGFSSFNRAMGLGGDGPARVNECLLGSSYDFENHMRVFVLNDIPDPR---DPAYLP 854 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRLVEL 575 + + + ML LF + R M+ D + + L ++ Q + Sbjct: 855 -ILEGLLARAHIAQGGSMLTLFTNRREMETCFDDINPRMKEEGLRVVCQKWGVST---KG 910 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 R E L L+SF EG D G L V I ++ F + P+ + + Sbjct: 911 LRDEFIANETLSLFALKSFWEGFDAPGSTLKGVIIPRLPFSSPNDPLSKERA----AREK 966 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP 695 + LP+A +L Q GRLIRS G +++ D+RL+T YG+ L +LP I Sbjct: 967 GAWSKYCLPAAVIDLKQAAGRLIRSSTDTGILILADRRLVTMGYGRTFLRSLPSQNITVC 1026 Query: 696 EVPEGIVKKK 705 E I Sbjct: 1027 STDELIEAMT 1036 >UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=11 Tax=Mycobacterium tuberculosis complex RepID=DING_MYCBO Length = 664 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 161/672 (23%), Positives = 250/672 (37%), Gaps = 65/672 (9%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q++M A VA E G HL ++A TG GK+L+YL+P I A + +VVSTA +A Sbjct: 25 RRGQQEMAAAVAHAF--ETGEHLVVQAGTGTGKSLAYLVPAIIRALCDDAPVVVSTATIA 82 Query: 88 LQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRNLTAL--ASTEPTQQDLLAF 140 LQ Q+ +DLP L + + KF GR Y+C + AS ++ Sbjct: 83 LQRQLVDRDLPQLVDSLTNALPRRPKFALLKGRRNYLCLNKIHNSVTASDHDDERPQEEL 142 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNC 199 D + +R + G RD + D W ++S CL C Sbjct: 143 FDPVAVTALGRDVQRLTAWA----STTVSGDRDDLKPGVGDRSWSQVSVSARECLGVARC 198 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 + EC AR A+VVV NHAL+ +E+ + P++ LLV+DE H L D Sbjct: 199 PFGSECFSERARGAAGLADVVVTNHALLAIDAVAESAVL-PEHRLLVVDEAHELADRVTS 257 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 +AE+T+ + T+LV + +RL A I Sbjct: 258 V--AAAELTSATLGMAARRITRLVDP-------------KVTQRLQAASATFSSAIHDAR 302 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 P + + +A LR + + Sbjct: 303 ----------------------PGRIDCLDDEMATYLSALR----DAASAARSAIDTGSD 336 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + + L + + W E+ + Sbjct: 337 TTTASVRAEAGAVLTEISDTASRILASFAPAIPDRSDVVWLEHEDNHESARAVLRVAPLS 396 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 V++ L ++ ++TSATL SF + GL R + + SPF H + G Sbjct: 397 VAELLATQVFARA-TTVLTSATLTIGGSFDAMATAWGLTADTPWRGLDVGSPFQHAKSGI 455 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LR 558 + + P D AE + + + L LF+S RA + + + + L Sbjct: 456 LYVAAHLPPPGRDGSG--SAEQLTEIAELI-TAAGGRTLGLFSSMRAARAATEAMRERLS 512 Query: 559 LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPI 618 +L QGD LVE + + L G S +G+D+ G LS V I +I FP Sbjct: 513 TPVLCQGDDSTSTLVE----KFTADAATSLFGTLSLWQGVDVPGPSLSLVLIDRIPFPRP 568 Query: 619 DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 D P++ + + F + A+ L Q GRL+R G V + D R+ T Sbjct: 569 DDPLLSARQRAVAARGGNGFMTVAASHAALLLAQGSGRLLRRVTDRGVVAVLDSRMATAR 628 Query: 679 YGKRLLDALPVF 690 YG+ L +LP F Sbjct: 629 YGEFLRASLPPF 640 >UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3T0_9PROT Length = 620 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 158/692 (22%), Positives = 261/692 (37%), Gaps = 106/692 (15%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 L EQ+P + R Q ++ ++A + G L EA TG GKTL+YLIP + Sbjct: 12 FERGGLLDEQLPGYGRREEQIKLAGEIAGCIVS--GSRLLAEAETGTGKTLAYLIPAL-- 67 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALAST 130 +++ST +LQDQ+ +DLP ++K + + GR Y+CP+ L Sbjct: 68 --RSSDKVLISTHTRSLQDQLVHRDLPAVQKALGAKRRVALLKGRSNYLCPQRLK----- 120 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD---DLWRRL 187 + Q E + LD + D + D + + Sbjct: 121 -------------THISSPQVELWAQKTMLKVLDWSRKTQDGDLAALPFDPFAKGIGAMI 167 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLL 244 + C C + CP AR++ Q A++VV NH+L++A ++ P + Sbjct: 168 TATADQCAGSKCAEFEHCPLMKARQKAQGADIVVTNHSLLLADAALKSGDFGEVLPAFDV 227 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 VLDE H LP +A + + + D+ +L A E K Sbjct: 228 YVLDEAHSLPQLAGQHFGIQLTRMN-FIQWLNDMQAELEAMGDEPALKK----------- 275 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 +++ +L ++ +G E A+ E ++L++ + +E L LAE Sbjct: 276 --------DIVEQGRVVLEAWLESGLE-----ALEEAWGDMLKLSDLRRERSEPLTRLAE 322 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 E ++ + G W+ E Sbjct: 323 RAEQLAEE---------------------------------IAMVKKPGDGFVGWSEGEG 349 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + + + L + LW I+ SATLR SF + GL + Sbjct: 350 ELTRYTV----APVETGPVLAKHLWSRQAAFILLSATLRVSGSFDYARNRLGLADAEECF 405 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 SPF++ +Q I +PR + +A M + + + VLF + Sbjct: 406 H---PSPFDYAQQAMIYLPRHMPDSRSPG---AVATMTDEIETLLRASRGR-AFVLFTAW 458 Query: 545 RAMQRFL-DYVTDLRLMLLVQGD-QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 +++ + L +L+QG+ R +++ R SVL G +SF EG+D+ G Sbjct: 459 SMLKQVAPELARRLPWDVLIQGESGSRDAILDAFRA----DTHSVLCGTRSFWEGVDVPG 514 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + LS V I K+ F P + P++ + F LP A L Q GRLIRS Sbjct: 515 ESLSMVIIDKMPFAPPNDPLLQARIRRCEEQGGSGFRDIQLPEAIATLRQGAGRLIRSED 574 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G + + D RL K YG+ + LP PI Sbjct: 575 DRGVMALLDSRLYHKAYGREAVHNLPPAPIRD 606 >UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepID=C7NJ65_KYTSD Length = 765 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 164/696 (23%), Positives = 263/696 (37%), Gaps = 80/696 (11%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 PR Q +M A+VA+ + E HL ++A TG GK+L+YL+P +A A K +VV+TA + Sbjct: 30 PREGQARMTAEVARAVNTSE--HLLVQAGTGTGKSLAYLVPAVAHAVATGKPVVVATATL 87 Query: 87 ALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 ALQ QI +DLP + + + + + GR Y+C L + + Sbjct: 88 ALQAQIVDRDLPRVAEALRSEMGRPITYALVKGRNNYLCQHKLLGGFPDDDADALVSMGQ 147 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCY 200 D EE R + + G RD + WR++S C C Sbjct: 148 VDADRSALGEEVVRLREWAQITE----SGDRDELVPGVSHRAWRQVSVSARECFGASRCP 203 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 EC ++R ++ +V+V NHA + + P++ LLV+DE H L D Sbjct: 204 VASECFVELSREAAKDVDVIVTNHAFLAIDAIEGRSML-PEHDLLVVDEAHELVD----- 257 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN 320 ++ ++ P T+ A A + L E +L+ Sbjct: 258 --------------------RVTGVATDELTPGTVAIAARKAGKFADTDRLEEAEEALSQ 297 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 L+ +P G + LPD + L L + RG++ + EK Sbjct: 298 ALD-PLPEG-------TLRSLPDAL---ADALVVLRDAARGVSTDLKPEKGEKADGPQQT 346 Query: 381 RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRV 440 A ++ +A W + R Q + V Sbjct: 347 ARA--------------AVDEVGDVAQRLLEERELDVVWVAPDGRSNQRRNVLRVAPMSV 392 Query: 441 SDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL--KEKAGDRFVALDSPFNHCEQG 498 + L ++ +++TSATL SF L GL V + SPF++ +Q Sbjct: 393 AMLLREKVFTE-RTVVMTSATLELGGSFDALAGTLGLLGAGAPSWNGVDVGSPFDYPKQA 451 Query: 499 KIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 + P D + + E+ A R L LF+S RA + D + + Sbjct: 452 MAYVAGHLPAPGRDGTAPEQVDEIEALIR-----AAGGRTLGLFSSMRAARAAADEMRER 506 Query: 558 ---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIA 614 +L QG+ LV +R A R+ L G S +G+D+ G V I +I Sbjct: 507 LGDEFEVLCQGEDQLPTLV----RRFAADARTCLFGTLSLWQGVDVPGSACQLVLIDRIP 562 Query: 615 FPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 FP D P+ + + F S A+ L Q GRL+R G V D R+ Sbjct: 563 FPRPDDPLSSARSQAIARNGGNGFMAVSATHAALRLAQGSGRLVRRADDRGVVAFLDPRM 622 Query: 675 LTKNYGKRLLDALPVF-PIEQPEVPEGIVKKKEKTK 709 +T Y L +LP F P + + G +++ + T Sbjct: 623 VTARYAGFLQKSLPPFWPTQDRALVLGALQRLDATA 658 >UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23_CATAD Length = 706 Score = 481 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 174/736 (23%), Positives = 272/736 (36%), Gaps = 118/736 (16%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 T L + A +AL Q R Q M VA +L ++ HL ++A TG GK+ Sbjct: 11 TPTDDLTPLLDAAVEALGGQT-----RPGQIAMAKAVAASL--DDRVHLLVQAGTGTGKS 63 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRG 116 L+YL+P +A K ++V+TA +ALQ Q+ + DLP L I L F GR Sbjct: 64 LAYLVPALAH----HKRVIVATATLALQRQLVAHDLPRLAAAITPLIKREPAFALLKGRN 119 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 YVC + A+ +P Q D E R + + + G RD Sbjct: 120 NYVCLNKVEGGAAEDPGQD---VLFDPLAVGKLGAEVLRVREWVEETE----SGDRDDLS 172 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 + D W ++S CL C ++ +C A+ + A+VVV NHAL+ A V Sbjct: 173 PGVSDRAWAQVSVSARECLGSKCQFFEDCFAEQAKELARSADVVVTNHALLAIAAMDGDV 232 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P++ +++DE H L + A +L T +E+ +T Sbjct: 233 QVLPEHDAVIVDEAHELVNRVTSAAT-----------------GELTKTAVERAHHRTDK 275 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 + N L + +L N E RF G + + L Sbjct: 276 FVKEATAANLAVATL-DFTEALEN----------TPEGRFQRG--------LPEELGMAL 316 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 LR + L +LS+ G + R + A + ++A Sbjct: 317 VALRDASRSALTELSKNKGGDLDMDGARKQARA--------ATEAVHQVAERVLEGAEQD 368 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W R E +G + + + + L ++ P +++TSATL+ F+ + G Sbjct: 369 VVWLERSEFKGIKNSTLKIAPLGIENLLRYKMFARTP-VVLTSATLKLGGDFTGVAGSVG 427 Query: 477 LKEKAGD-----------------------------------------RFVALDSPFNHC 495 L R + + SPF++ Sbjct: 428 LHGTERVELDFKPELPEEIYDAAVKLLREGDSDGEEFLDTVQNLPQYWRALDVGSPFDYP 487 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 +QG + + R P D +M A L LF+S RA Q + + Sbjct: 488 KQGILYVARHLDPPGRDGIRDDQLDMLADLMD----NAGGRTLGLFSSMRAAQTAAEKLR 543 Query: 556 -DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIA 614 + L +L QG+ L+ ++ A + L G S +G+++ G L V I +I Sbjct: 544 TKIDLPILCQGEDSLAELL----RKFAEDPETCLFGTLSLWQGVNVPGASLQLVVIDRIP 599 Query: 615 FPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 FP D PV E + F S A+ L Q GRLIR+ G V + D RL Sbjct: 600 FPRPDDPVSAARTEAVGRSGGNGFMAVSASHAALLLAQGAGRLIRAIDDKGVVAVLDSRL 659 Query: 675 LTKNYGKRLLDALPVF 690 TK YG L ++P F Sbjct: 660 ATKPYGSFLRASMPAF 675 >UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XY97_LEPCP Length = 658 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/712 (24%), Positives = 273/712 (38%), Gaps = 83/712 (11%) Query: 1 MALTAALKAQIAAWYKA---LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTG 57 M +AL+ ++A + A L F PR Q ++ VA L EE L EA TG Sbjct: 1 MTPVSALREEVALAFAATGVLARTEKQFRPREVQTRLADAVAHAL--EERSVLVAEAGTG 58 Query: 58 VGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRG 116 VGKT +YL+P + +VSTA +LQDQ+Y +DLP L +++ ++ GR Sbjct: 59 VGKTYAYLVPLLLSGL----RALVSTATKSLQDQLYLRDLPRLVQLLGLPVQVALLKGRA 114 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 Y+C L T L + EQ GDL + R Sbjct: 115 SYLCLHRLDHARHTAELPD------RHSLRVLARVEQWSKTTRSGDLAELEVLDERS--- 165 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---S 233 + +++++ +CL +C +R+C ARRE +A++VV NH L A M + Sbjct: 166 -----PVIPLVTSNRENCLGSDCPQFRQCHLVQARREAMQADIVVVNHHLFFADMALRDT 220 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 P +V DE H L + L LD+ L+A + R Sbjct: 221 GMAELLPSVDAVVFDEAHQLNEAGVQFLG-----RHIGTGQLLDIGRDLLAAGLAHARGL 275 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 + L + L L A R E + + Sbjct: 276 ------------QDWQALAGAVEQGARRLRLACAGTLRAAGRLRWDE-----RGLSEDFV 318 Query: 354 KLTEMLRGLAELFLNDLSE-KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 R + L + D+ +L + L F + Sbjct: 319 AALTDARAACVAASDALGVVADAAPDLAKLQERAQALAAQLAAFLGPVE----------- 367 Query: 413 GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ 472 +W + +L + + + L + I TSATL + S Sbjct: 368 -HGHVRWIDLTLHQARLAE----SPLDIRETLREQIEGERRAWIFTSATLGDDPALSWFT 422 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 +G+++ + SPF++ ++ +P PS ++++AA + + Sbjct: 423 RSAGVEDA---HTLRAGSPFDYGRNARLFVPARFPRPSEATHPAAVSQLAARCAQAL--- 476 Query: 533 KHLGMLVLFASGRAMQRFLDYVTDL------RLMLLVQGDQPRYRLVELHRKRVANGERS 586 VL + RA+Q + + +LVQG+ P+ L+ R R+ Sbjct: 477 -GGRCFVLTTTLRALQGIGADLRARLATLPDPIDVLVQGEAPKRALM----ARFLATPRA 531 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 VLVG SF EG+D+ G L V I K+ FPP + P+ L++ PF+ +P A Sbjct: 532 VLVGSHSFWEGIDVPGSALQCVLIDKLPFPPPNDPLAEARCRSLEAQGGKPFDDYFIPEA 591 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 + L Q GRLIRS G +VI D RLLT NYG+RL+ ALP P+ E Sbjct: 592 AVALKQGAGRLIRSETDRGLLVICDTRLLTMNYGRRLMGALPPMPLVGDEAE 643 >UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0F4_9ACTO Length = 640 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 174/698 (24%), Positives = 284/698 (40%), Gaps = 78/698 (11%) Query: 18 LQEQIPDF--IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L E + F RA Q+QM+ VA LA E + I+A TG GK+ YL+P + Sbjct: 11 LDEVVSSFGGSARAGQQQMVRTVASALA--EDKIALIQAGTGTGKSFGYLVPVMQRVANT 68 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPT- 133 ++ ++V+TA +ALQ QI KD P + + +P +K A G Y+C + + E Sbjct: 69 KERVIVATATLALQRQILEKDAPCVNEHLPKPVKVAALKGWNNYLCLHKVEGGYAEEYAL 128 Query: 134 -QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 DL+ F + +E R + DT G RD + D +WR++S Sbjct: 129 FPSDLVDFAPKTSSATGKEIV-RVREWAKQTDT----GDRDDLKPGVSDQVWRQVSVPSN 183 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 CL C EC +AR EA VV+ NHA++ SE + + LV+DE H Sbjct: 184 ECLGSTCPLRDECFPALARERATEANVVITNHAVLGIHATSENKMCG-EFDALVVDEAHD 242 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 L + + A ++ +L T + L E Sbjct: 243 LMRIVHSQATLRLHPGAAVTKM--RWAGRLAGVA-------TTAVETSLQGLEKVLEGFS 293 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 E + P+E+ + + L ++ D +E Sbjct: 294 EGLLRTR----------------------PEELQDAMRLLDTEVRLVLSSINTSDKDAAE 331 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 K + + + ++ L ++ + W T+ + + + Sbjct: 332 KKLATGV------VAELAEFLDAWDRPV-------------ESMITWVTQRDEDPAV--- 369 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD-RFVALDSP 491 +CV + VS + L+ +++TSATL+ SF L G+ + V + SP Sbjct: 370 LNCVPLDVSAPIAFNLFSE-KAVVLTSATLKLGGSFGPLASEVGVYRVESELEMVDVGSP 428 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F+ +QG + + P ++E ++ GML LF+S RA Q+ Sbjct: 429 FDPAKQGILYVAAELPAPPRSG----VSEEQLQTLLRLTEASGGGMLGLFSSKRAAQQAA 484 Query: 552 DYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 DY+ + L +L+QG+ LV+ R+ + LVG S +G+D+KG V + Sbjct: 485 DYLRESTDLPVLLQGEDQLSNLVQEFREDSQ----TCLVGTMSLWQGIDIKGPNCRLVVM 540 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 +I FP PV+ + + PF+V SL AS + Q GRL+RS G V + Sbjct: 541 DRIPFPVPSDPVIEARNDEAARKGQNPFQVVSLSHASLLMAQGAGRLLRSVDDQGMVAVL 600 Query: 671 DKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEK 707 D RL TK YG + +LP ++P EV G +K+ + Sbjct: 601 DSRLATKPYGMFIRKSLPQLWPTTSIEVAVGAMKRLAE 638 >UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibacterium acnes RepID=D1YCN3_PROAC Length = 683 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 153/712 (21%), Positives = 266/712 (37%), Gaps = 93/712 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M V + + + HL ++A TG GK+L YL P + E+ ++V+TA +A Sbjct: 29 RPGQVAMAKAVDQAM--RDKLHLLVQAGTGTGKSLGYLAPALVYCVEKGAQVIVATATLA 86 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ KD+P + + + GR ++C + ++ Q L+ D Sbjct: 87 LQAQLAYKDIPTILDASEKVLSRRPRVAVLKGRNNHICLHKVRGSSTRTKGQDALVPGAD 146 Query: 143 DELTPNNQEEQKRCAKLK----------GDLDTYKWDGLRDHTDIAIDDDL-WRRLSTDK 191 + ++ E + + + GL D D L W ++S Sbjct: 147 LVVAADDGREVEAAPESTLGAEVVMLREWAEKQVEESGLGDRDDAPAHTPLAWAQVSVPA 206 Query: 192 ASCLN-RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG 250 CL + C + EC AR + + A++VV NHA++ + + P++ +++DE Sbjct: 207 NECLGVQRCPFGSECLSEAAREQARNADLVVTNHAMLAIDALNGGRVL-PEHDTVIIDEA 265 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H L + A DL +V + R T + L + Sbjct: 266 HELVNRFTRAASK-------------DLSPAIVTMTAK--RAMTWLDDDVGADLLNQADS 310 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 + + ++ P V ++ + +LR LA + ++ L Sbjct: 311 MAHALEAIA----------------------PGRVTTPDAQVIQTCAVLRDLARVAVSQL 348 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 + R ++ M E R+ LA + W + E+ + Sbjct: 349 DRND---EDSREPVDAERVQAQAAMREVFETAERMVGLAAAD----VVWVSESEKGYR-- 399 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK---------- 480 H + V L ++ I+TSATL +F + GL + Sbjct: 400 -SIHVAPLSVGGLLRENVFAQ-STTILTSATLCIGGNFLAIARDVGLSPRGQIEGDAPEV 457 Query: 481 ----AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 G R V + SPF++ +QG + + R P D E+ + V Sbjct: 458 FETQMGWRGVDVGSPFDYSKQGILYVGRSLPRPGRDGI---APEVLDDLAELV-WAAGGR 513 Query: 537 MLVLFASGRAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 L LF+S R +++ + +L QG+ L +R A R+ L G S Sbjct: 514 TLGLFSSQRNAVAAAEHMRSAMPDIPVLCQGEGHLADLT----RRFAADPRTCLFGTVSL 569 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 +G+D+ GD V I ++ FP D P++ + ++ F S A+ L Q Sbjct: 570 WQGVDIPGDTCRLVVIDRVPFPRPDDPLMAARSKAVEDAGGNGFMTVSAGHAALLLAQGA 629 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVPEGIVKKK 705 GRLIR G V + D RL+T YG L ++P F E+ G +++ Sbjct: 630 GRLIRRADDRGVVAVLDPRLVTARYGNFLRASMPPFWTTTDREMAVGALRRL 681 >UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 RepID=B6BV17_9PROT Length = 640 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 157/689 (22%), Positives = 277/689 (40%), Gaps = 87/689 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L + ++ R Q QM + +++ + + + IEA TG+GKTL YL+P + + Sbjct: 16 GPLASHLSNYQKRDGQVQMAQFIDESVTLK--KTVVIEAGTGIGKTLGYLLPLV----RQ 69 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 K +++STA LQ+Q+ KD P+L+K + + + GR Y+C + + ++ Sbjct: 70 NKKIIISTATKNLQEQLLEKDFPILQKALKLNFNVSILKGRSNYLCHHRINNHSKMFFSK 129 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 D F D E L G ++ +++ +C Sbjct: 130 ADASIFSDVEG-----------------LLKKTNTGDVAELKKNFSGNITHAVTSTSENC 172 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---PDPKNLLLVLDEGH 251 L +C + +C ARR AEV+V NH L + +E PK+ ++V DE H Sbjct: 173 LFGDCKFSNDCFVNKARRRAHSAEVIVVNHHLFFSDFFNENDDANNLLPKSDVIVFDEAH 232 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 +L D+A L S ++ LD + + I R N +L Sbjct: 233 NLIDLA--MLYSSKVFSSLKLNRVLDDLINHLKNSV----IGLENFSMIFNRYNFSISQL 286 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 +L+ ++LY + + D ++EI L +L ++ Sbjct: 287 LDLVKDEPQKISLYKLSQ--------LTTFKDHLIEIMNNLEELINAIKE------PGFI 332 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 K I L+ I + + E ++ LW + + Sbjct: 333 NKDIDASIKELNNFIELLKNIINPSEKKNALW--------------------LEKFNNSI 372 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 H + V + S ++ TSAT+ + N+F ++++GLK+ +SP Sbjct: 373 SIHITPVDVKGIFSKT-TASNDSMVFTSATMTTNNNFDYFKDLTGLKDI---ETRVFESP 428 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 FN+ + + IP P NE+ + + + ++ K L L S +++ Sbjct: 429 FNYEKNALLHIPMGLPNP---NEKDFFSSLVDYAYPAIKLNKGR-TLFLTTSLNGVEQVA 484 Query: 552 DYVT------DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 + L +L QG P L+E + N + VL+G SF EG+DL GD L Sbjct: 485 NQFEFINNRNADTLNILRQGMLPNQLLIEEFK----NSQNCVLIGSFSFWEGIDLIGDNL 540 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 + + I K+ F D P+V + L + F +P + + Q +GRLIR+ G Sbjct: 541 TLLIIDKLPFKSPDDPIVDAKINLLNE--KDFFMKSQIPMTTLLMKQGMGRLIRNFSDKG 598 Query: 666 EVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 ++ D R+ K YGK++L +LP F + + Sbjct: 599 VAILGDNRIQKKYYGKQILKSLPPFQLVE 627 >UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_ACISJ Length = 688 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 181/747 (24%), Positives = 279/747 (37%), Gaps = 97/747 (12%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+L+ L + A L P R Q M VA+ + E L +EA TG+GK Sbjct: 1 MSLSD-LVLPVFAPDGPLARVRPHLRSRPGQAAMALAVAQAINARES--LVVEAGTGIGK 57 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYV 119 T +YL+P + + +++STA LQDQ+ ++DLPLL++ + + A GR Y+ Sbjct: 58 TFAYLVPALL----SGERVLISTATKTLQDQLLTRDLPLLQQALALPLRVAALKGRANYL 113 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L + +A + E+ + GDL + Sbjct: 114 CLYRLEQARRDGEGHDEAVAHDLACV------ERWAQSTRSGDLAEVP--------GLDE 159 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV--- 236 WR++++ +CL C R+C + AR + Q A+V++ NH L A + ++ Sbjct: 160 YSAAWRQVTSTVDNCLGSMCPRLRQCHVYRARHDAQAADVLIINHHLFFADLGAQGAGAA 219 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P ++V DE H L ++A L + Q + Sbjct: 220 QLLPDTGVVVFDEAHRLAEIAAQFLGTHVSTSQLL-----------------QLGQDVVA 262 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE---HRFAMGELPDEVLEICQRLA 353 A R A + L + + + L L + G++A+ R A + E L+ Sbjct: 263 AGARHARGAADWQGLLQHLRQCAHALRLAVAPGEDADAAGSRIAWTGVTPEALDPSAWDG 322 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 L + L + + D+ LH + + L R+ + Sbjct: 323 ALEGAVAALRAVLAALDGVAQHAPDLAHLHSRTVAL------------LERVLHFCSEAD 370 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP-------------------H 454 A +W L + V+ L LW+ P Sbjct: 371 AGTVRWVESAG-----ALRMVETPLDVAGALR-TLWKGKPPTQGAWDESDEPPAASAPRS 424 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 I TSATL + GL+ G R + + SPF++ Q + +P PS Sbjct: 425 WIYTSATLGDGKDLRWFTDACGLE---GARTLQVPSPFDYARQAALYVPPALPLPSDAGH 481 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-----TDLRLMLLVQGDQPR 569 +A ++ LVL S RA+ D + + +LVQG R Sbjct: 482 SVQLARWVGDAVARL----GGHTLVLTTSLRALAVIADELCRRFAPGGGIEVLVQGHASR 537 Query: 570 YRLVELHRKRVANGER---SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITE 626 R+VE R ++ R VLVG SF EG+D+ G+ L V I K+ FP P + Sbjct: 538 SRMVERFRAQLDASGRPAGHVLVGAASFWEGIDVPGEALQMVVIDKLPFPAPGDPWEQAQ 597 Query: 627 GEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDA 686 L F +LPSA+ L Q GRLIR+ G +VI D RLL K YGK LL A Sbjct: 598 ARRLADQGGNVFRRHALPSAAVALKQGAGRLIRNENDHGILVIADTRLLHKGYGKPLLRA 657 Query: 687 LPVFPIEQPEVPEGIVKKKEKTKSPRR 713 L + G S R Sbjct: 658 LAPMRRLHTQEEFGAALDALTRTSTRG 684 >UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borrelia RepID=B2S179_BORHD Length = 685 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 163/694 (23%), Positives = 293/694 (42%), Gaps = 77/694 (11%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 I F+ R Q +MI ++K E L IEAPTG GK+L+YLI I ++ Q+ ++ Sbjct: 14 NIKGFVKRNTQLRMIKKISKAFENE--NFLVIEAPTGTGKSLAYLIAAIDFIQKTQEKVI 71 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 +STA++ LQ+Q+ KD+ L+K+IP ++F G Y+C R L L Sbjct: 72 ISTASINLQEQLIKKDIETLEKLIPFKMRFGVIKGMRNYLCLRRLEELEKN--------- 122 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 L + E + G RD ID+ +W +S +C C Sbjct: 123 LLTYTFNKKHLEALIYWTQNTK-------TGDRDELHF-IDEQIWEEVSASPETCSGITC 174 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAME--------------------SEAVLPD 239 +C F AR++I E ++++ NH L++ + E L Sbjct: 175 PDENKCFFKKARKKILECDIIITNHHLLLNDLYIKNEILTEKENYENGSEKNYEEINLIL 234 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P +++DE H+L + AR + + K + T +++ K A Sbjct: 235 PNVKNIIIDEAHYLEEAARTLFSKNFS----------RIGIKQIFTKIDKIIKKQNINGA 284 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + +E + + I + P+ + + + Q + E Sbjct: 285 YKKNFEIETMLSFENVEYIIKIQKDF-PSIYRITNDTHKTDFYIRIKTHLQNIIYNLENY 343 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + + ++ KT ++ RL + I + F ++++ W Sbjct: 344 KVSITSIIQNMENKTAKIELERLIKNIEYKESLIKNF-----------ISENQYDNFCFW 392 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 + F GI + +L +++++ + II TSATL SFS +GL Sbjct: 393 IE----NKKNIPIFKTSGIYLGPELNKIMYKRVKRIIFTSATLMINQSFSYFINQTGLNL 448 Query: 480 KAGDRFV-ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 D + L F + E+ + + +P+ E+ + + + ++ V K G L Sbjct: 449 INQDIEMEKLPYSFPYKEKSILTVTSDIEDPNK--AEEFLNQSIQYIKELVILNKG-GTL 505 Query: 539 VLFASGRAMQ----RFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 +L S ++++ D++ + + L +QG+ P++ L+ +K + ++SVL+G+++F Sbjct: 506 ILLTSFKSLEYIGKNIKDFLRENNINLFIQGELPKHELINSFKK---SPKKSVLIGMKNF 562 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+KGD L+ V I K+ F P++I + N F ++LP A Q Sbjct: 563 WEGIDIKGDKLTMVIIPKLPFQTPSDPILIAKNALATKSNENFFTQETLPQAIMKFKQGF 622 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 GRLIR +G +V +DKR+ K YGK L +LP Sbjct: 623 GRLIRDSKDYGIIVCFDKRIFEKTYGKLFLQSLP 656 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 161/771 (20%), Positives = 279/771 (36%), Gaps = 93/771 (12%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 A +A ++ ++ + + P+F R Q M V + G++LA+EA TGVGK+ Sbjct: 298 ASSAEIREAFSSA-GPVGKIYPEFEARDEQVTMAEAVNDAFS--TGKNLAVEAGTGVGKS 354 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP 121 ++YL+P + A++ T+ V+T AL DQ+ +LP L + + + + G Y+C Sbjct: 355 MAYLVPAVFTAQKNGITVGVATKTNALLDQLMHHELPRLSSAVGGISYCSLKGFSHYLCL 414 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R + L T P + + E + L G L + D + +D Sbjct: 415 RKVERLMQTGPHMKTV-----------QDRELSQAPALAGVLSFIEQSEYEDIDGMRVDY 463 Query: 182 DLWRR--LSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEAVLP 238 L R ++T CL + C +Y + C +R + + A++VV N L+ + ++ L Sbjct: 464 RLMPRYEITTTSHDCLRKKCPFYGQRCYVHGSRFKAEAADIVVTNQTLLFCDVAADGGLL 523 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL-------------DLFTKLVAT 285 P V+DE H+ AR AL S E+ R Q KLV Sbjct: 524 -PSIRYWVIDEAHNAEGEARRALGSSIELDELARRAQRVSPSSAMGQTIFDQAERKLVGK 582 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELY--------------------------------- 312 A + ++L Sbjct: 583 IDANEDAFASTVTADLDETALLRDDLTLKSQNDPISGQTGLSGGDTLLFALSGKAKRAGD 642 Query: 313 ------ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL--EICQRLAKLTEMLRGLAE 364 + L + + + + + D+V E+ Q L+ L +E Sbjct: 643 AFACAVDEFTQAAESLLYFDTSSRSKSYDLVDIWINDQVRSSEVFQSLSTAGHALVDASE 702 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 + E G + V+ +Q + A + + + + Sbjct: 703 KLIKACQEMVGLMEDVK-GAAAIQRDIASMALYLKDVINSIELIVFEGSDTFAYSVQLAR 761 Query: 425 REG---QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA 481 ++ + + + V ++L L+ I+ TSAT+ N+F GL E+ Sbjct: 762 KKNTYSRRSEKLDALMLNVGNELAERLYARTHSIVFTSATMTIANAFDSFFTALGLSEEG 821 Query: 482 GDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + L S ++ E KI + EP N+ +++A + + L Sbjct: 822 ERATVHLQLGSSYDFDENMKIYVVEDMPEP---NDARYLAALEQLLID-IHRASAGSTLS 877 Query: 540 LFASGRAMQR----FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 LF + R M+R + L ++ Q V+ R E L L+SF Sbjct: 878 LFTNRREMERAHSTVQAALKGDGLRVVCQKWGVS---VKGLRDEFIADEHLSLFALKSFW 934 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG D G L V I K+ F P+ + ++ + LP A Q G Sbjct: 935 EGFDAPGATLKTVVIPKLPFSKPTDPLSCARAQ----MDAQAWSHYVLPQAVIETKQAAG 990 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKE 706 RLIRS G +++ D+RL+TK YGK L ++P I E + + Sbjct: 991 RLIRSAHDTGSLILADRRLVTKGYGKVFLKSMPSRNITILSAREVVAALSQ 1041 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 153/733 (20%), Positives = 283/733 (38%), Gaps = 58/733 (7%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 Q + + ++ PR Q+ M +V + +L +EA TGVGK+++YL+P Sbjct: 280 QAFSVDGLIGSMYENYEPRIEQKIMAEEVLSAFS--TSNNLVVEAGTGVGKSMAYLVPAA 337 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRGRYVCPRNL 124 A + ++T AL DQ+ K+LP+L K + +LK A G Y C R + Sbjct: 338 VTALRNNIPIGIATKTNALLDQLVYKELPMLAKALEAEGAGELKHVALKGFSHYPCLRRI 397 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + + S ++ ++ + + L + D + +D Sbjct: 398 SHVVSDGAHMVEIAG-----------QQYSQATSIAAILSYIEQTEYDDIDALKLDYRTL 446 Query: 185 RR--LSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK 241 R ++T CL + C ++ C ARR+ + A VVV NHAL + ++ L P Sbjct: 447 PRYAITTSSRECLRKRCPFFGTYCFVHGARRQAEHAHVVVTNHALFFRDLAADGNLL-PH 505 Query: 242 NLLLVLDEGHHLPDVARDALEM---SAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL 298 ++DE H AR AL + + E+ RL + + +E+ +P Sbjct: 506 AKFWIVDEAHGAEAEARKALAINLDAQEMLRLAGRLTTEDAKRNAFVRLERRKPVDSGTQ 565 Query: 299 --------AIPERLNAHCEELYELIASLNNILNLYMP-AGQEAEHRFAMGELP-DEVLEI 348 ++ E+ + E L + + A +E + E+ ++ + + Sbjct: 566 PEASTLFYSLTEKAKKRGRDFGEKAEILAKRMKDLVKVAPKENNKNYDTFEVWINDDIRL 625 Query: 349 CQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG--MFEAQSKLWRLA 406 L R + +S + + + R + + +A++ L Sbjct: 626 TPEFKGLQGYGRDFVDAAEKLISSGNEIIAFLDDMDGVAENQREIASIVIDAKNMLQACE 685 Query: 407 SLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN 466 ++ + A + ++ + + +L+ L+ ++ SAT+ + Sbjct: 686 TILGPADLRYVYSARVCRKPERVAESLEAQIVDIGQELDETLYERTQSVVYASATISISD 745 Query: 467 SFSRLQEMSGLK--EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 F + GL E + + L S +++ ++ + EP N +++A + Sbjct: 746 DFQAFNQALGLNASEASRSKECLLGSSYDYNHHMRVFVLNDMPEP---NNARYMARLQDM 802 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVT------DLRLMLLVQGDQPRYRLVELHRK 578 + + ML LF + R M++ D V DLRL+ G V+ R Sbjct: 803 LLR-AHLAQQGSMLTLFTNRREMEQCFDAVNPELKANDLRLVCQKWGVS-----VKGLRD 856 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 + L L+SF EG D G L V I K+ F P+ + +R + Sbjct: 857 DFLADKHLSLFALKSFWEGFDAPGATLRGVIIPKLPFAKPSDPLSCERS----ARDRSAW 912 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 LP A + Q GRLIR+ G +++ D+RLLTK YGK L++LP I + Sbjct: 913 AHYVLPKAVIEVKQAAGRLIRTATDEGVLILADRRLLTKGYGKSFLNSLPSTNITMCSID 972 Query: 699 EGIVKKKEKTKSP 711 E I +++ Sbjct: 973 ELIEHLLDESTQA 985 >UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1WP29_VEREI Length = 664 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 198/694 (28%), Positives = 320/694 (46%), Gaps = 60/694 (8%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL-AIEAPTGVGKTLSYLIPGI 69 +A Y+AL +P F+ RA Q+ M +++TL + L IEAPTG+GK++ YLI GI Sbjct: 20 VAQVYRALTSVMPGFVARAQQKTM---ISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGI 76 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNL 124 A A E K LVVSTA +LQDQ+ SKDLPL + + A GR R+ CP + Sbjct: 77 ASAVTEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKM 136 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 A A QDL A DD + R +W G+RD + + W Sbjct: 137 HAFAGGT---QDLFAAGDDHTALTQAVDLWR---------QGQWAGVRDDLPVRLHQRAW 184 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMES--EAVLPDPKN 242 R++ ASC + C + CP++ + ++ A V++ NH +++ + + +V D Sbjct: 185 MRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFSDGHK 244 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 L V DE HHL D +A RL L F V + Q P + E Sbjct: 245 CLFVFDEAHHLSDKLLNAFA---------RRLDLAAFPSEVIEAIAQLCPGMVGLDFAAE 295 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 R+ + ++ G ++HRF + E+P + + L +R Sbjct: 296 RVRGIWRACEDAALTM---------LGDGSQHRFTLNEVPPQFRRLLLDLKAQLSGMRAT 346 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 L E S+ R + + + +G + + V +W R Sbjct: 347 -------LKEVKESNARFRNKAVAMLADSRIGQLSGDVQEAIDCIEEFTGDDLVARWLAR 399 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 G+ + +C + + + LW + ++TSATL +L SF ++ GL + Sbjct: 400 ----GRNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATLTTLGSFEPMRIALGLPAETS 455 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK-KHLGMLVLF 541 + LDSPF++ ++++PR+ VE S + H +AAF + KH G+LV F Sbjct: 456 --TLKLDSPFDYGR-ARLIVPRLCVEAS---DPAHSRMVAAFLKDHALGAAKHRGVLVYF 509 Query: 542 ASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 S + M + + T R +L+QG + ++E H++R+ G RS++ GL S EG+DL Sbjct: 510 TSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVRSIIFGLDSIGEGVDL 569 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 G+ ++V + ++ FP D PV+ T E+L+S + PF + ++P Q GRL+R Sbjct: 570 PGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPKVGLKFAQVAGRLMRR 629 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 WGE + DKRL +K YG +++ + P +E Sbjct: 630 EQDWGEFYVLDKRLRSKRYGAQIVKSTPFRTMEM 663 >UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD43_9ACTO Length = 646 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 182/713 (25%), Positives = 273/713 (38%), Gaps = 79/713 (11%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 ++A L A+ Q+ PR Q M A+ A L E+ +HL ++A TG GK++ Sbjct: 1 MSADLVEASGRVLDAVVAQMGG-SPREGQASMCAEGAAAL--EDRQHLLVQAGTGTGKSV 57 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGR 117 YL+P + VVSTA +ALQ QI KD P++ + LK G Sbjct: 58 GYLVPLLTHCAMNGVRGVVSTATLALQRQILVKDAPVVVDAVASATGARLKVAVLKGWSN 117 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y C L PT+ L D + P E K +++ + G RD Sbjct: 118 YACLHKLD---GGYPTEGTLFEDHDMSVGPTG-ELGKEILRIREWISETT-TGDRDDLVP 172 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL 237 + D WR S K CL ++C EC AR E +A+VVV NH+L E L Sbjct: 173 GVSDRAWRHASVAKPECLGKHCPLIDECFAQAARLEAADADVVVTNHSLFGINACGEGEL 232 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 + +V+DE H L D R + DL V+ R Sbjct: 233 FG-EYDAVVIDEAHELADRVRS-------------QAAADLTVARVSRVARSLRSN---- 274 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 L+ +L E A L ++ E L Sbjct: 275 ------LSIDSTDLEEAGAGLGAAMSPLEEGLLEYRP---------------SALVDAMI 313 Query: 358 MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 +L G A +++SE G L R ++ +G +A + Sbjct: 314 VLDGAARRASHEVSEAQGEPAAKLLAR--AAIDELIGALDAWGR----------DPDQSI 361 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 + T++E + + + VS + P I+TSATL +F + G+ Sbjct: 362 AYITKDESD---NARLTVGPLDVSAAIGGNGIGERPA-ILTSATLAIGGNFDFMAAQVGM 417 Query: 478 K-EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 + + SPF+H QG + P D + + + + G Sbjct: 418 AVSGVPWHGIDVGSPFDHGRQGIRYVATHLPLPGRDGPSEELLDELVELAQ----ASGGG 473 Query: 537 MLVLFASGR-AMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 ML LFAS R AM L + +QG++ +L++ R+ S LVG S Sbjct: 474 MLALFASRRGAMAGGQALRERTDLTVYLQGEETLAQLIQRFREE----RDSCLVGTMSLW 529 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 +G+D+ G V I KI FP D PV ++ F SL A+ + Q VG Sbjct: 530 QGVDVAGAACRLVVIDKIPFPRPDDPVSRARSMDVERRGGNGFVSVSLTHAALMMAQGVG 589 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEK 707 RL+RS G V I D R++TK YG ++ +LP +P PEV G +++ K Sbjct: 590 RLLRSTDDRGVVAILDPRVVTKRYGGFIMRSLPAMWPTTDPEVVRGALRRLAK 642 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 170/737 (23%), Positives = 276/737 (37%), Gaps = 60/737 (8%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + A Q + + +F PR Q M V K + E +L +EA TGVGK++ Sbjct: 255 PSDADIVQAFSETGLVGSLYEEFEPRIEQVAMAEAVRKAFSSSE--NLLVEAGTGVGKSM 312 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-------PDLKFTAAFGR 115 +YL+P AR + V+T L DQ+ +LP L+K + P L + G Sbjct: 313 AYLVPAALTARANNIAVGVATKTNTLLDQLVYHELPALEKALRLADPDRPSLTYAPLKGF 372 Query: 116 GRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHT 175 Y C R + + + +EQ + L L + D Sbjct: 373 SHYPCLRKIGHIVEEGA-----------QTKLFGNKEQTQAPSLAALLSFIEQTEYDDMD 421 Query: 176 DIAIDDDLWRR--LSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAME 232 + ID + R ++T CL R C Y+ C +RR + A++VV NH+L+ + Sbjct: 422 SLKIDYRVLPRRLITTTANDCLRRKCPYFGTSCFVHGSRRRAEAADIVVTNHSLLFCDLV 481 Query: 233 SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE---ITAPWYRLQLDLFTKLVATCMEQ 289 ++ L P V+DE H AR A +S IT R+ D ++ V E+ Sbjct: 482 ADGGLLPP-IRYWVVDEAHGAEAEARRAFSLSLSAEDITRLANRVGADEASRNVFVRAER 540 Query: 290 FR--PKTIPPLAIPERLN--------AHCEELYELIASLNNILNL-YMPAGQEAEHRFAM 338 P ++ L A+ + E A L ++L G+ E Sbjct: 541 RVVVPGMEEGSSLFYALTGKARSAGKAYADAAREFSAHLKDLLFFDQNKKGKGYEIVELW 600 Query: 339 GELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA 398 ++ + AE + E G + + I Q A E Sbjct: 601 INSDVRSSATFAQVESYGRAMTEAAEKLVRVCQELVGYLEELEGAAEI-QREIASTAMEL 659 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 + ++ + + AT ++ ++ + I V + + L+ + Sbjct: 660 KDQMNAADIILDRAPETYAYAATLSRKKDRVAEKLEALLINVGEAMNETLFERTHSTVFA 719 Query: 459 SATLRSLNSFSRLQEMSGLK--EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 SATL + F + GL E + + LDS ++ + + EP NE Sbjct: 720 SATLAVDDKFDAFESALGLNASEHSTCQMCKLDSSYDFDAHMTVYVASDMPEP---NEAA 776 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT------DLRLMLLVQGDQPRY 570 ++A + V ++ ML LF + R M+R D V DLR++ G Sbjct: 777 YLAALQRLLVD-VHRAQNGSMLTLFTNRREMERCFDEVQPQLKVDDLRVVCQKWGVS--- 832 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 V+ R E L L+SF EG D G L V I K+ F P+ Sbjct: 833 --VKGLRDDFLADEHLSLFALKSFWEGFDAPGATLKGVVIPKLPFAKPTDPLSCERA--- 887 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 + + + LP+A Q GRLIR G +++ D+RLLTK+YGK L++LP Sbjct: 888 -ARDDQAWRRYVLPAAVLETKQAAGRLIRKADDTGVLILADRRLLTKSYGKAFLNSLPSR 946 Query: 691 PIEQPEVPEGIVKKKEK 707 I+ E + + Sbjct: 947 TIKVMTAAEIVADLERS 963 >UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL9_BEUC1 Length = 679 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 179/690 (25%), Positives = 264/690 (38%), Gaps = 70/690 (10%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 RA Q +M VA ++G L ++A TG GK+L+YL+P I A + ++VSTA +A Sbjct: 44 RAGQHEMALAVAHAF--DDGVPLLVQAGTGTGKSLAYLVPAIVRAVTSDERIIVSTATLA 101 Query: 88 LQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNLTA--LASTEPTQQDLLAF 140 LQ QI +KDLPL + ++ G YVC +T A EP L Sbjct: 102 LQRQILTKDLPLARGVLEASLPRPPAVALLKGWHNYVCRHKVTGGYPAEDEPGLFSLDGG 161 Query: 141 LDDELTPNNQEEQKRCAKLK---GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 D E + + + G RD + + WR++S CL + Sbjct: 162 ADHPRRSAEVGEFETLGEEVVRLREWAEETTTGDRDDLVPGVGERAWRQVSVTAMECLGQ 221 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C EC ARR + A+VVV NHA++ A + P++ LV+DE H L D Sbjct: 222 KCPMLAECFPEAARRASRSADVVVTNHAMLGIAAGGSPGVL-PEHDGLVVDEAHELAD-- 278 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 R + + E++AP + + + + Sbjct: 279 RVTAQATVELSAPAVERAARIARRHAGAALAGLDDAA---------------------QA 317 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 L L L G LPD + E L LR A ++ L Sbjct: 318 LRTGLGLV-----------PEGRLPDGLPE---SLVGTVTTLRAAAHEGMSALGPNPPGS 363 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 L++ + L + E +L A + W R Sbjct: 364 TDGA-GALVMARSALLVLVEIADRLLSDAVAQRRD----VLWCERGRDGAS---RLRVAP 415 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + V+ + L ++TSATL SF+ + GL R + SPF++ Q Sbjct: 416 LDVAGLVATHLVAD-RAAVLTSATLELGGSFAPVASSLGL-ATGAYRAERVASPFDYARQ 473 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 G + R P D Q EM A + V++ L LF+S RA + + D Sbjct: 474 GIRYVARHLPRPGSDGPSQ---EMLAELAELVQAA-GGRTLGLFSSRRAAEVAAQEIRDR 529 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFP 616 L +L QG+ LV +R A E + L G S +G+D+ GD V I +I FP Sbjct: 530 TGLDVLCQGEDVLPTLV----RRFAEEEATSLFGTLSLWQGVDVPGDSCRLVTIDRIPFP 585 Query: 617 PIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLT 676 D PV E + + PF + A+ L Q GRL+R G V I D RL T Sbjct: 586 RPDDPVGAARMEVVAARGGNPFMTVAATHAALLLAQGAGRLLRRTTDRGVVAILDSRLAT 645 Query: 677 KNYGKRLLDALPV-FPIEQPEVPEGIVKKK 705 YG+ L +LP +P P V + + Sbjct: 646 ARYGEFLSRSLPPMWPTTDPAVARAALVRL 675 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 150/707 (21%), Positives = 277/707 (39%), Gaps = 45/707 (6%) Query: 26 IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTAN 85 R Q +M+ + +E + + +EA TG GKTL YL+P +A A K +V+STA Sbjct: 274 EFRPTQSKMMNSIYNNYTHDEPKSMIVEAGTGTGKTLGYLLP-LAYAAYPDKKIVISTAT 332 Query: 86 VALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 LQ QI + + L ++P +L G Y+ S D + + + Sbjct: 333 NLLQQQIAQRTMKQLNHLLPFELNGVVIKGNSHYLDLAKFVHSLSI-VEDSDYIQLIKAK 391 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 + GDLD + R + + L + +Y + Sbjct: 392 ILV------WLLKTTSGDLDELNLNAQRS--------PYFAEIRHQGVKTLREDNEFYND 437 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMS 264 ++++ A V++ NHA ++A ++ + + LV+DE HL + + Sbjct: 438 DFLIRRQKQLHTANVIITNHAYLVAH--AQELGDGTRRPYLVVDEAQHLSESILRRSRQT 495 Query: 265 AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI----PERLNAHCEELYELIASLNN 320 + + R + + LV+ E+ A+ E L L E + Sbjct: 496 LDFQS--IRTAIHVLENLVSDNQERNLANIFEEHALGKYNVELLRDDLRSLSEATDAFQQ 553 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF---------LNDLS 371 L + + + E P + ++ L + + L + L L Sbjct: 554 ALYRQFMLNVQGNNSNELIEQPLDNQQLFSLLTPSNKPIMQLEQALASVQFHFMALRHLF 613 Query: 372 EKTGSHDIVRLHRLILQMN-RALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 E+ + L+ Q + + + +A +KL + + G W T ++ Sbjct: 614 EQQADRWLFSDRYLMSQFQSQWMVLADADNKLHQFIETLEERGEAAAFWLTVQQSAEHSS 673 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490 + + V+ L ++ + ATL + + + L E L EK S Sbjct: 674 MRLSGGLLAVNHFLTENVYPYFAQPLFVGATLFTSSRSNYLYEQLDL-EKDRTLQKRFAS 732 Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550 PFN+ E+ ++++ + P+ N E++ +A + ++ + ++LF S +++ Sbjct: 733 PFNYAERAELLVAKDAPIPNQTNNEEYTRYLAQTIYQLCKNNQ-CQTMILFNSLVTIEQV 791 Query: 551 LDYVTDLRLM----LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + + L +L QG R E K+ A+G S+L+G SF EG+DL L Sbjct: 792 YSQLKETDLFDQRDILAQGITGRR---EKLLKQFASGTSSILLGASSFWEGIDLPKSSLE 848 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 + I ++ F + + LK + PF +LP A+ L Q +GRL+R+ +G Sbjct: 849 LLIITRLPFDSPNEIMTRAHNNLLKREGKNPFYHSALPKATMRLQQGIGRLLRTPNDFGV 908 Query: 667 VVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEKTKSPR 712 VI D R+ T+ YG +L LP PI++ E + K+ K R Sbjct: 909 GVILDSRISTRRYGSSILKNLPKDLPIKELPTTELVESAKKFLKKYR 955 >UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG21_KOSOT Length = 835 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 160/728 (21%), Positives = 304/728 (41%), Gaps = 61/728 (8%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 + + L++ + + R Q ++A+++ G++G + IEA TG GK+L+YLIP Sbjct: 143 VFSEGGLLEDILEGYEYRQEQFMTALEIAESIEGKQG--IMIEAGTGTGKSLAYLIPSAY 200 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCPRNLTALA 128 + + + +VVST LQDQ+ KD+ ++KK+ + +L+ GR RY C + Sbjct: 201 YSISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELRVWTLKGRERYFCLKK----- 255 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + ++ + K +L G L G D ++ + ++ R + Sbjct: 256 -----------YFEELEYAVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENRNRFT 304 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE-----------AVL 237 + CL + C ++ CP++ +R Q A++V+ NH+L+ + + Sbjct: 305 ATRFECLRKLCPFFNRCPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGM 364 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSA--EITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 PK +L++DE H L +A+ + R ++ + + F + Sbjct: 365 LLPKFKVLIVDEAHELEMSLTEAMSFNLVPHEAVSTIRKAINCSKDALRSIRNHFERSFL 424 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 L RL E+ ++ L I+ Y + +H EL + + + L + Sbjct: 425 EELW--GRLRKFTAEIEKI---LKTIVVSYNNCSTDEKHSIDNEEL-EALKKDIGELYTI 478 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 + R + L + E + L +L +++ + + +L L++ Sbjct: 479 IQRFRAVLIQLLRMVEEVAEEEETPVLEKLNMELKSVTSELDGL--IRQLLGLSREEDGR 536 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS----LNSFSRL 471 V + R HL I+ +DQL ++ +P + SATL + F+ Sbjct: 537 VV-YVRRTVTNNGNHLIITSAPIK-NDQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYA 594 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 + + GL E + L S F+ EQ K I + + N +++ + A + ++ Sbjct: 595 RRILGLNESF--HAIKLGSSFDFQEQLKFYIVKDMAKY-QPNNREYLNQGANLISEMLKI 651 Query: 532 KKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL 591 K M VLF S + M + +++ L + +Q +P + + V N E SV+ G+ Sbjct: 652 VKGSAM-VLFTSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHV-NSENSVIFGV 709 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR-YPFEVQSLPSASFNL 650 +SF EG+DL G+ L + I K+ F D P++ + + N P Sbjct: 710 RSFWEGIDLPGEHLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYYPKMITAF 769 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLL--TKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 Q +GRLIR+ G +V+ D R++ K Y ++LL +L P+V ++ Sbjct: 770 RQGIGRLIRTRNDRGVLVVLDNRIVDGNKIYSRKLLRSL------SPDVKINVIDGSRVI 823 Query: 709 KSPRRRRR 716 R+ RR Sbjct: 824 SELRKLRR 831 >UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_COMTE Length = 699 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 188/728 (25%), Positives = 296/728 (40%), Gaps = 89/728 (12%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 AQ+ A AL P F PR Q +M VA+ + EEG L +EA TGVGKT +YL+P Sbjct: 16 AQVFAQQGALSLAEPAFTPRPGQTRMALAVAQAI--EEGGVLVVEAGTGVGKTYAYLVPA 73 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + + ++VSTA ALQDQ++++DLP L + L+ GR Y+C L + Sbjct: 74 LL----SGQRVLVSTATKALQDQLFARDLPRLVHGLGLPLRMARLKGRSSYLCTERLERV 129 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 QD L E+ GDL R + + Sbjct: 130 RQGRTAPQD-----PQVLRAVADVERWARVTRTGDLAELTALDERS--------PVMPLV 176 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPKNLL 244 S+ K +C+ +C +++ C AR++ EA+VVV NH L+ A ++ S P + Sbjct: 177 SSTKDNCMGSDCPHWQGCHVNQARQQALEADVVVVNHHLLFADLDVRDSGMAHLLPNTGV 236 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 +V+DE H L D+ + +LV + R + + L Sbjct: 237 VVIDEAHRLNDIGVQFAGEALSS------------QQLVGYARDALRMTQEHARGMADWL 284 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 C L + + L G R A + + L+ + A L + + L Sbjct: 285 -VLCATLEQAMRELRLQAGKPPVGG-----RLAWQAVTPQGLDAVKWRAALVRLGQSLRA 338 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 L + S + ++ RL+ ++ L RLA A + +W Sbjct: 339 LLIPLSSLEGAGAELQRLYERGAEL------------LARLARFAAPADDECVRWLEV-- 384 Query: 425 REGQLHLWFHCVGIRVSDQLERLLW-----------------RSIPHIIVTSATLRSLNS 467 G +L + ++ +++ L I TSATL + Sbjct: 385 --GAQYLRMLESPLSIARIMQQRLLQRSLEDAGTDQGEEPDSSRKKAWIFTSATLGNDAQ 442 Query: 468 FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 S E GL G + + ++SPF++ Q + +P+ Q +A++ + Sbjct: 443 LSWFVESCGL---RGAQVLQVESPFDYHRQAGVYVPQPFAAAGSAQHSQQVAQLVLDAAQ 499 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVTDL-----RLMLLVQGDQPRYRLVELH-RKRVA 581 ++ LVL + +A+ + L +LVQG+ P+ L++ Sbjct: 500 RI----GGRTLVLTTTLKALHAISASLRTSLGLFADLDVLVQGEAPKLALIQRFMAAGAV 555 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 G +VLV +F EG+DL GD+L V I K+ FPP D P+V L+S+ R F Sbjct: 556 AGRGAVLVASATFWEGVDLPGDMLQLVVIDKLPFPPPDDPLVEARSRLLESVGRGAFHDY 615 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI--EQPEVPE 699 LP A+ L Q GRLIRS G +VI D RL+T YG L+ ALP + QPE Sbjct: 616 MLPEAALALKQGAGRLIRSEADRGVLVICDSRLMTMGYGAELMSALPPMRVLGSQPEFEA 675 Query: 700 GIVKKKEK 707 + + K Sbjct: 676 ALEQLSAK 683 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 153/721 (21%), Positives = 274/721 (38%), Gaps = 57/721 (7%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 +A + + +P+F R Q +M+ + + L E + IEA TG+GKT YL+P Sbjct: 231 QTVADKTALMTKALPNFEERPAQFKMMDTIWQAL--HEQKECVIEASTGIGKTAGYLLPA 288 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 I AR K + +ST LQ+Q+ ++LP ++KI+ + G Y+ Sbjct: 289 IVYARTVHKKIAISTYTSYLQEQLVEEELPKIEKILGTKVNICVLKGMQHYIDLDRFEQS 348 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + D + Q G L G I R++ Sbjct: 349 MAYADESYD-------DTFSILQILVWLTKTETGVLSELNVSGGGQLFLEKI-----RKI 396 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 DK + A + A+ +V NHA+V++ + + + + V+ Sbjct: 397 PNDK--------PSKGFDFYEQALKNSAFADCIVTNHAMVLSDLVRQTPIF-TQIDGWVI 447 Query: 248 DEGHHLPDVARDALEMSAEITAPWY---RLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 DE H A E+ T Y ++ T L E + K + +RL Sbjct: 448 DEAHQFIQAAMQQDEIVFSYTQWKYIFGQIGTMEDTGLYQLFCEAAKKKQRVSMQSLQRL 507 Query: 305 NAHCEELYELIASLNNILNLYMPA---GQEAEHRFAM-----GELPDEVLEICQRLAKLT 356 +AH L M G+ A + + + L++ + + Sbjct: 508 DAHFIRLQRAFDETIQRAAQSMQQQMKGKRASSKCTLFIEDVTLAKESFLQVSKLTQQWL 567 Query: 357 EMLRGLAELFLNDLS--EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 ++ A+ F N++ +K + + H I ++ + +E + SS Sbjct: 568 DLATEAAQGFENNIEQLDKNDRYILSEWHYWIREVKIKIAEWE---------DIFLSSHD 618 Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLL--WRSIPHIIVTSATLRSLNSFSRLQ 472 + W + R L V+ +E++L R I+ TS TL + + Sbjct: 619 GSSVWLEFDVRSVPGSLHVFKKPANVTPIIEQVLAPLRKQASIVWTSGTLMVPGNERFVT 678 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 G+ + + L +P + K I + ++E++I +A + V Sbjct: 679 RQLGISDSV--EVIKLQAPPAYYAGAKAFIVTDMPDIQHVSQEEYIEAVAHAITRTVRMT 736 Query: 533 KHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYRLVELHRKRVANGERSVL 588 + VLF + +++ ++ + D ML QG R+ K +VL Sbjct: 737 EGR-CFVLFTAQDMLRKTVELIQDSELLDDYMLFAQGVTGGSRM--RILKSFQKFSHAVL 793 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 G SF EG+D+ GD L+ V + ++ F + PV + L + R F SLP A Sbjct: 794 FGTNSFWEGVDVPGDALASVIVVRLPFSSPEEPVFKARAKHLTAQGRNSFTELSLPEAIM 853 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 Q GRLIRS G ++ D+R+ +K+YGK + ALP +++ ++PE + + Sbjct: 854 RFKQGFGRLIRSSQDKGAFIVLDRRITSKSYGKEFIKALPPIDVKKLQLPELLKELNHWQ 913 Query: 709 K 709 K Sbjct: 914 K 914 >UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS05_9BACT Length = 652 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 170/698 (24%), Positives = 285/698 (40%), Gaps = 61/698 (8%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 + + F R Q ++ V L G GR LA EAP GVGKT + L P Sbjct: 1 MTDLFGPDGLFCNNLSGFEYRPQQERLSQAVLGLLEGNSGRILAAEAPPGVGKTFALLAP 60 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + A+ T++V T+++ LQ+Q+ +KDLP L +++ D+ F GR Y C R Sbjct: 61 AVTWAKTTGNTVLVLTSSITLQEQLINKDLPTLSEVLGLDVPFGLLKGRSNYACMRK--- 117 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 ++E + LL+F +D+ + + +GDL + R Sbjct: 118 --ASELGDEGLLSF-NDKGEASGVILEWLALTEEGDLSEV---------PLPPGHPAVER 165 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 +S CL C Y C A R VVVAN+ L + L++ Sbjct: 166 ISGSFRGCLGARCPYRDRCFVQRALRNASRWTVVVANYHLYFSYALGRGGAFPVPARLVL 225 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 DE H +P+ A +S + + ++ + + + KT+ Sbjct: 226 CDEAHRMPEAASSVSAVSTRM-----DDWIRHLRRVPSPGLNELGAKTVGY--------- 271 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAM-GELPDEVLEICQRLAKLTEMLRGLAEL 365 ++ + + SLN + L+ + + + E P+E++ + L + Sbjct: 272 DQQKTLDDVKSLNRAVRLFFERLDSSGIKNGLFIEPPEELVREGLDVLDLAAPVIATGRR 331 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 F + L + S + + R + + + + + +R L S T W Sbjct: 332 FSSYLDDLGPSGE--EMARDGAEYLAWVQVLDEMGQAFRWC-LDVSDYPDWTYWKE---- 384 Query: 426 EGQLHLWFHCVGIRVSDQLERLL-WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + D L R P+++ SAT+ F +GL+ D Sbjct: 385 ----DGALSSAPSKCGDILPRAFGGDDPPYMVAVSATMAVDGRFDYWSRETGLE---PDE 437 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + LDSPF EQ ++++ + + + + + + + K+ LVL +S Sbjct: 438 ALLLDSPFPLSEQMELLVVDLGIAVTDEKYDDRVCRVVRKLCKE----NGGASLVLLSST 493 Query: 545 RAMQRFLDYVTD---LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 R ++R Y+ +L+QGD P+ L+ +R E SVLVG SF EG+D+ Sbjct: 494 RLLKRVGGYLRRCSGDGYNVLIQGDLPKVELL----RRFREDESSVLVGTVSFREGVDVP 549 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD L+QV I +I FP D P+ + F LP+A +L Q VGRLIRS+ Sbjct: 550 GDSLTQVIIDRIPFPHPDDPIQRARRDL---EGPSSFVKSVLPNAKMHLRQAVGRLIRSY 606 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 G G V + D RLL++ + +LD+LP PI + V + Sbjct: 607 GDRGRVAVLDGRLLSRRNWR-VLDSLPDVPIRKIRVVD 643 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 157/704 (22%), Positives = 267/704 (37%), Gaps = 47/704 (6%) Query: 8 KAQIAAWY---KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 K +I + + + F R+ Q M +V L R L EA TG+GK+++Y Sbjct: 274 KDEIHRAFAKPGVVSQMYDKFETRSEQVSMSVEVRNALVTSSHREL--EAGTGIGKSIAY 331 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRN 123 L+P A++ T+ ++T AL DQ+ + DLP L + +P+ L F + G Y C Sbjct: 332 LLPEALFAQKNDVTVGIATKTNALTDQLVTHDLPALARALPNGLSFCSLKGYEHYPCLHR 391 Query: 124 LTALASTEPTQQDLLAFLDDELTPNN--QEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 + A E L +D E +N + + DG D I Sbjct: 392 VDRAALEEL----PLTLIDQEGRSSNSVASDMLTAIAVIYAYACQSADGDLDALGIRWRS 447 Query: 182 DLWRRLSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPD 239 ++ A CL C YY EC AR+ ++VVV NH+L++ + ++ +LP Sbjct: 448 VPREMVTIKAAECLRSKCPYYPHECFVHGARKRAGSSDVVVTNHSLLLRNVAADGKILPP 507 Query: 240 PKNLLLVLDEGHHLPDVARD--ALEMSAEITAPWYRLQLDLFTKLVATCM------EQFR 291 ++ V+DE H AR A+E+SA+ + L + + + M E Sbjct: 508 IRH--WVIDEAHGFEAEARHQWAIEISAKEMRNGFELLGGIKSGAIHAAMVGAANLEDST 565 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 T + + L+ +++ + L G + + + E E + Sbjct: 566 LLTGLLTRSAAAVQRAMAAMGNLMVAVHELAPLAKSDGGYNSLQLWINDEVRETKEWKEF 625 Query: 352 LAKLTEMLRGLAELFLN-DLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ 410 L + L L E L + + + L + + L L L + Sbjct: 626 LETASVALSALEEAALRIGKTTEALTASAPNLASNLSESGMFLSTL-----LESLKLICD 680 Query: 411 SSGAPVTKWATREE-REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 + A + + + +L ++ TSAT+ + FS Sbjct: 681 GTDKSYVYSAKLTRLKRDIGSEALVAEKLDIGAELAEKWLPETHSVVFTSATIAVGDDFS 740 Query: 470 RLQEMSGLKEKAGD-RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 + GL + + + + LDS F++ + + P+ + + Sbjct: 741 HFEHAVGLDRGSFEHKSLHLDSSFDYENHMGVFVAEDMPTPTDPGYLDALEK----LLFD 796 Query: 529 VESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQGDQPRYRLVELHRKRVANGE 584 V + +L LF + R M+R + + ++ L L Q R R++ + Sbjct: 797 VHVQMGGSVLTLFTNRRDMERLYEALEPRLSEYGLTLACQERSSSAR---RIREKFLAEK 853 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 L L+SF EG D GD L V I K+ F + P+V + + SLP Sbjct: 854 NLSLFALKSFWEGFDAAGDTLRCVVIPKLPFASPNEPLVKER----EVREDRAWWRYSLP 909 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 A Q GRLIRS G +V+ D RL++K YG L +LP Sbjct: 910 EAVIATKQAAGRLIRSAEDKGVLVLADSRLVSKRYGSSFLKSLP 953 >UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXW2_SYNWW Length = 681 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 156/706 (22%), Positives = 289/706 (40%), Gaps = 46/706 (6%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 +++ +PD+ R Q + V+ L+ +E L EA TGVGKT +YL+P + Sbjct: 13 FESSGPMEQLLPDYKFRQEQVNLTVAVSAALSDQE--FLLAEAGTGVGKTFAYLLPAVLW 70 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRN-LTALAS 129 + +E + +V++T ALQ Q+ +DLP +K++I D A GR ++C + LA Sbjct: 71 SLQENEKVVIATRTKALQQQLIERDLPDVKRVIKADFTCAEAKGRENFLCWNKYINILAG 130 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 + Q+ FL L Q E GD + W L+ Sbjct: 131 KKRLQEGEFEFLQSVLPWAEQSE-------TGDRKELRLKSALMKH--------WDILAA 175 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 D+ SC C Y+ +C + +++++++V NHAL+++ ++ + L P+ L++DE Sbjct: 176 DRKSCRKDKCLYHEKCFRLKMIKRLEKSQIIVTNHALLLSDVQVDNRLL-PEYHYLIIDE 234 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H L A D L M +DL L + + + + H Sbjct: 235 AHSLDREAFDKLSMRFSS-----GDSMDLLEYLQKAYLPHIKELSSVDRELLGECLTHIS 289 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 +L+ + LN + + E + E + L E+ + + Sbjct: 290 MAVKLLKEYFSALNRPLSSKNGYEATLVIKAADLEKTWFLEAL----EIHQDWQDSINLL 345 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 L + + +++R + + ++ + S + + W E + + Sbjct: 346 LKNLKKLEECMGGVEESEELSRVIISLQEEADHAYQINEEHSFQSDMLVWLDCERGKVK- 404 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL- 488 + ++ +L+ L+ + +++ SATL F GL + + + Sbjct: 405 --AVSSSPVCIASELQNRLYHKLESLVMVSATLAVEERFDYFLNKFGLSQLQEEERLKTL 462 Query: 489 --DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 SPF++ +Q ++ +E + ++A + ++ L+LF S + Sbjct: 463 LEKSPFDYKKQAGYILLDDMP---ARDEPDYQEKLAGILSQIID-ITGGRTLILFTSRQQ 518 Query: 547 MQRFL----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 ++ Y ++ LLVQ + + + +++ RSV++GL +F EG+DLKG Sbjct: 519 LKDIAGIIRPYCEQRQVKLLVQNEDGGFETL---KEQYTAHPRSVIMGLDTFWEGIDLKG 575 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 DLL + I K+ F D P ++ + LN+ F LP A L Q VGRLIR Sbjct: 576 DLLKCLVIIKLPFRSPDEPFCQAWEKYYQQLNQSGFSRFLLPDAVIRLKQGVGRLIRGEN 635 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 G +VI D RL +Y K L++LP + + K+ Sbjct: 636 DRGAIVILDARLGKSSYSKVFLNSLPFKNPRVLSCMQFTQELKKWV 681 >UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M767_9BACT Length = 639 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 170/696 (24%), Positives = 276/696 (39%), Gaps = 63/696 (9%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 I L +P+F R Q ++ +++ L +E R A EAPTG GKT + ++P Sbjct: 1 MEDIFGSDGLLSMGMPEFEVREGQGELADAISQFLLSDE-RVFAAEAPTGTGKTYAVMVP 59 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + A+ + L+V T++V LQ+Q+ KD+P L+ + +L+ GRG Y C R Sbjct: 60 AMLWAQRYGRRLLVLTSSVTLQEQLADKDIPALQAALGLELRCCLLKGRGHYACLRK--- 116 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 L+ D+ + ++ + ++ + G ++ + + R Sbjct: 117 ----------ALSLGDEGFLSFDGDDGQLSQRIVAWSGETE-TGDLAELSLSANHPVLAR 165 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 + + +CL + C C + A R E++VVV+N+ A P P + L+V Sbjct: 166 IVSSHQTCLGKLCPCRDRCFYRRAMRRASESDVVVSNYHKYFAYRLDGEEFPIPCD-LIV 224 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA-IPERLN 305 DE H + AR +S+ + L V + +E + LA + L Sbjct: 225 CDEAHAMSASARSVAAVSSRRGEWDH--VLRHVPPAVKSLLETSEGDSEKALADVLTSLR 282 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 A EEL+ L L +P + + D V LA E+ G + L Sbjct: 283 AQAEELF---------LYLQLPQPENS----PNNPYSDRV------LASGGELTGGASRL 323 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 LS D L + ALG+ + +L + S W Sbjct: 324 AERVLSHPPAEDDEGNLPAV----QWALGLSDMARRLNQC--CDTSRWPEWAYW------ 371 Query: 426 EGQLHLWFHCVGIRVSDQLERLL-WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 H C + + + +L P I+ SAT+ F+ +GL D Sbjct: 372 --HDHESLKCSPVTGAPMISEVLDTPDAPKIVAVSATMTVDGKFNFWAAETGLW---PDE 426 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + SPFN EQ + + + V + +A++ + + + + + Sbjct: 427 TRIMPSPFNLSEQMSVHVVDLGVRVMDREYGERVAKVCRRYCVRNKGATLVLLSSRRLLE 486 Query: 545 RAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + + +L QGD+P L+ RK +GE VLVGL SF EG+D+ GD Sbjct: 487 SVAGYLKGHASADGYCVLAQGDKPSAELLAQFRK--NDGEAKVLVGLASFREGVDVAGDA 544 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L+QV I +I F D P+V F LP A L Q +GRLIRS Sbjct: 545 LTQVIIDRIPFSHPDDPIVQARRAL---EGGKYFTAVELPGAKMRLRQAMGRLIRSKTDH 601 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 G VVI D R+ K K +D+LP P+++ V Sbjct: 602 GRVVILDSRITQKQQWK-FIDSLPPAPLKRVVVKTA 636 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 169/734 (23%), Positives = 277/734 (37%), Gaps = 68/734 (9%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + A + P + PR+ Q QM +V LA H IEA TGVGK+++YL+P Sbjct: 285 EERFAPGGLVNRMYPGYEPRSEQVQMAVEVRDALA--TSTHRVIEAGTGVGKSIAYLVPM 342 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLL-KKIIPDLKFTAAFGRGRYVCPRNLTAL 127 +AR + T+ ++T + L DQ+ +LP L +++ L + A G Y C R L L Sbjct: 343 AELARRNKVTVGIATKSNNLADQLIYHELPRLAREMDGGLTYCALKGYDHYPCLRKLDRL 402 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 A + + + D LT C GD D I L Sbjct: 403 ARAQEIKTNRDP--ADTLTAIAVLYAFACQSPTGDF---------DGLGIRWRSVNKADL 451 Query: 188 STDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPKNLLL 245 +T C R C +Y +C +RR +VVV NH+L+ + +E +LP ++ Sbjct: 452 TTSSRECARRLCPFYPDKCMVHGSRRRAARVDVVVTNHSLLFRNVAAEGKILPPIRH--W 509 Query: 246 VLDEGHHLPDVARD--ALEMSAEITAPWYRLQLDLFTKLVATCMEQ---------FRPKT 294 V+DE H + AR A+++SA+ + + + F T Sbjct: 510 VVDEAHSIESEARRQWAIKVSADESRAVFERLGGDRAGALGKIARDLALSDAATLFMGLT 569 Query: 295 IPPLAIPERLNAHCEELYELIASLNNIL-------NLYMPAGQEAEHRFAMGELPDEVLE 347 + + +R + EL++ + L N M G + + Sbjct: 570 VKASSSTQRASLAMAELFDAVRELARAARSEGGYDNANMWIGNDLRDSMVWTGFEEVGRT 629 Query: 348 ICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS 407 L + T+ L L E + D+ R + ++ L + Sbjct: 630 ALDALDEATKNLASLVETVAE--EKPDLVTDVADGQRRMRELRDGLRL------------ 675 Query: 408 LAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS 467 + + R + V + L + I SAT+ +S Sbjct: 676 ILDGADDRYVYSCQVNRRLKAGGECLTAERLDVGEALAEEWLPEVHTAIFASATVTVSDS 735 Query: 468 FSRLQEMSGLKE--KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 F Q GL + R V LDS ++ +V+ +P + +++ + Sbjct: 736 FDHFQHAVGLDRISSSSSRSVHLDSSYDFERNMAVVVASDMPDPRS--RDAYLSALETLL 793 Query: 526 RKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPRYRLVELHRKRVA 581 V L LF + R M+ D + L L Q +++ R R Sbjct: 794 VD-VHLAMGGSTLTLFTNRRDMEELYDRVEPRLAQRGLALDCQRRTTSAKIL---RDRFL 849 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 + E+S L L++F EG D GD L V I K+ F P+ G + Sbjct: 850 SNEKSSLFALKAFWEGFDAAGDTLRCVVIPKLPFASPSDPLSCERGAREDR----AWARY 905 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 SLP A + Q GRLIR+ G +V+ D RL++K YGK+ L++LP P ++ EV + + Sbjct: 906 SLPEAVLEVKQAAGRLIRTSTDAGVLVLADSRLVSKGYGKKFLNSLPA-PHQRIEVRQ-V 963 Query: 702 VKKKEKTKSPRRRR 715 + E + RR Sbjct: 964 GRYLEMWRESHERR 977 >UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n=12 Tax=Actinomycetales RepID=Q47MW9_THEFY Length = 706 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 171/718 (23%), Positives = 261/718 (36%), Gaps = 100/718 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M VA + E HL ++A TG GK+L YL+P + A T+VVSTA +A Sbjct: 51 RDGQATMARSVAAAIDSRE--HLVVQAGTGTGKSLGYLVPALRHAVAANATVVVSTATIA 108 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ+Q+ +DLP L + + L + GR Y+C L+ A T + D Sbjct: 109 LQNQLIGRDLPRLTEALEPLLGRRPVYAILKGRRNYLCRYRLSQAA----TGPEEAELFD 164 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN-CYY 201 L + + +R + G RD + D WR++S C+ C Sbjct: 165 PHLLSSLGRQVRRLHEWA----EETLTGDRDDLTPGVSDLAWRQVSVGANECIGPQMCPV 220 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 +C +AR E A++VV NHAL+ L P + LL++DE H L D Sbjct: 221 SDDCFAELARAETIGADLVVTNHALLAIDAVQGYRLL-PDHDLLIVDEAHELVDRVTSVA 279 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 T + L K A + + + ERL + L ++A Sbjct: 280 ------TGVLSDRSISLAAKRAAPVCD---------VELTERLAETADGLALMLADTP-- 322 Query: 322 LNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR 381 P + + LA +R A L+ L E Sbjct: 323 --------------------PGRLDHLPDPLATAVAAVRDAAHACLSALPEPPRD----D 358 Query: 382 LHRLILQMNRALGMFEAQSKLWRLASLAQS--SGAPVTKWATREEREGQLHLWFHCVGIR 439 H + G+ E R+ Q W R + + Sbjct: 359 PHAASARRLALAGLEEVHCTAERILLCVQQPLRDRQDVVWF---ARGARQTPGLRIAPLA 415 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL---------------------- 477 V+ L + L+ ++TSATL SF + GL Sbjct: 416 VNRTLRQALFTE-RTTVLTSATLALGGSFDLMARQWGLGPLPDHDPAEAAEPAETTATPS 474 Query: 478 --KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKH 534 R + + SPFNH G + I P ++ +++ EMA Sbjct: 475 AEPSPLRWRAIDVGSPFNHARSGILYIATHLPPPGRESLHPEYLDEMAELI-----DAAG 529 Query: 535 LGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 L LF+S RA + + + L +L QGD LV+ + A E + L G S Sbjct: 530 GRTLGLFSSTRAAVHAAEELRERLPYPILCQGDDSTGHLVQ----QFAADEATCLFGTLS 585 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 +G+D+ G L V + +I FP D P+ + + F + A+ L Q Sbjct: 586 LWQGVDVPGPALQLVIVDRIPFPRPDDPLASARQRAIGAQGGNGFLEVAATHAALLLAQG 645 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVPEGIVKKKEKTKS 710 GRL+RS G V + D RL T YG L +LP + P+V +++ + S Sbjct: 646 TGRLLRSVHDKGVVAVLDPRLATARYGAFLRASLPPYWGTTDPQVARAALRRLHEAAS 703 >UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_DELAS Length = 724 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 195/725 (26%), Positives = 285/725 (39%), Gaps = 69/725 (9%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 +LTAA++A A L F+PR Q +M VA+ + E+ + L +EA TGVGKT Sbjct: 3 SLTAAVQAAFAP-QGLLSRAEALFLPREGQTRMALAVAQAI--EQRQTLVVEAGTGVGKT 59 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVC 120 +YL+P + + ++VSTA ALQDQ+Y++DLP L + L+ GR Y+C Sbjct: 60 YAYLVPALL----SGQRVLVSTATRALQDQLYARDLPRLVAALGMPLRMARLKGRSAYLC 115 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 L + QD L E+ GDL R Sbjct: 116 MERLERVRQGRTAPQDPQVLRSVALV-----ERWARTTRTGDLGELPALDERS------- 163 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVL 237 +++ + +CL +C ++++C VARR EA+VVV NH L+ A + ES Sbjct: 164 -PALPLVTSTRDNCLGSDCPHWQDCHVNVARRAALEADVVVINHHLMFADLDVRESGVAQ 222 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 P ++V+DE H L D S QL + + V ++ Sbjct: 223 LLPSVGVVVVDEAHQLNDTGVQFAGQSLS------GQQLTGYARDVLRAGQELARGMADW 276 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPA-----GQEAEHRFAMGELPDEVLEICQRL 352 + + R+ EL L R A+ L + + + L Sbjct: 277 MQLSARVEQALRELRLAAGKPPAGGRLPWQGVTPQGLDAQRWRTALVTLGRSLRALLEPL 336 Query: 353 AKL---TEMLRGLAELFLNDLS-----EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 +L LR L E L D VR L Q R L + + R Sbjct: 337 VQLQVSDPELRRLFERGNELLRRLATFAAAAVQDTVRWLELGSQQMRMLESPLTIAHIMR 396 Query: 405 L----ASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 + Q + + E E Q + + L R S I TSA Sbjct: 397 TRLLGLTQEQEGSEDQEREDAQPEPEPQEQEEGAPAPVHEAAGLPRQ--PSGTAWIFTSA 454 Query: 461 TLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAE 520 TL S E GL+E + + +DSPF++ Q + +PR + +A Sbjct: 455 TLGDDERLSWFTEPCGLREA---QVLRVDSPFDYARQAALYVPRPFAQAGSATHSTEVAR 511 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-----LRLMLLVQGDQPRYRLVEL 575 +A +++ LVL + RA+ D + L +LVQG P+ L+E Sbjct: 512 LALDAAQRL----GGRTLVLTTTLRALHAIGDALQQSLGLFGELDVLVQGQAPKLALIER 567 Query: 576 HRKRVAN--------GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 G +LV +F EG+DL GD L V I K+ FPP D P+V Sbjct: 568 FIAAGEGREGTGASPGRGCILVASATFWEGVDLPGDALQLVVIDKLPFPPPDDPLVEARS 627 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 L+S+ R F LP A+ L Q GRLIR G +V+ D RL T YG+RL AL Sbjct: 628 RSLESVGRQAFADYMLPEAAMALKQGAGRLIRRETDRGVLVVCDSRLATMGYGRRLRAAL 687 Query: 688 PVFPI 692 P Sbjct: 688 PPMRT 692 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 156/736 (21%), Positives = 258/736 (35%), Gaps = 66/736 (8%) Query: 8 KAQIAAWY---KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 + +I A Y + P + PR Q M +V L G H IEA TGVGK+++Y Sbjct: 267 REEIEADYAPGGLVNRMYPTYEPRDEQIAMALEVRDALV--TGTHRVIEAGTGVGKSMAY 324 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRN 123 L+P AR T+ ++T + L DQ+ +LP L + + L F A G Y C R Sbjct: 325 LVPFAEAARRNNITVGIATKSNNLADQLMYHELPKLAEQLDGGLSFCALKGYDHYPCLRK 384 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L ++ + + T + + + DG D I Sbjct: 385 LERMSRGQV----------EITTKRDPADTLTAVAVIMAYVCQSADGDLDSLGIRWRSVN 434 Query: 184 WRRLSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEA-VLPDPK 241 +T C R C ++ +C ARR A+VVV NH+L+ + +E +LP + Sbjct: 435 RPDFTTASRECARRLCPFFPDKCLVHGARRRAAHADVVVTNHSLLFRNVAAEGRILPPIR 494 Query: 242 NLLLVLDEGHHLPDVARDALE--MSAEITAPWYRLQLDLFTKLVATCMEQ---------F 290 + V+DE H + AR +SA+ + + T ++ + Sbjct: 495 H--WVIDEAHSIEREARRQWARVVSADESRVLFERLGGSSTGALSQVSRDLATSEGSTLY 552 Query: 291 RPKTIPPLAIPERLNAHCEELYELIASLNNIL-----NLYMPAGQEAEHRFAMGELPDEV 345 T + R + ++++ + L N + G E + Sbjct: 553 LGLTAKATSTVARASMAIADVFDGVRELGRRARGGYDNANLWIGPELRESDDWHDFLPSA 612 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRL 405 L + + + L + D E D+ + R + ++ L + Sbjct: 613 YAAIDVLEQADKSVDALVQAVAADKPEVVV--DLGDISRRLHELAENLKL---------- 660 Query: 406 ASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL 465 + + R I + + L + I SAT+ Sbjct: 661 --IIDGTDEHYVYSLQVNRRLRAGGESMTAERIDIGEALATEWLPEVHTAIFASATMTVS 718 Query: 466 NSFSRLQEMSGLKE--KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 SF GL + + LDS ++ +V+ +P + E ++ + Sbjct: 719 KSFEHFNHAVGLDRIGASTSSSLHLDSSYDFDSNMAVVVAGDIPDPR--DRESYLTALER 776 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRLVELHRKR 579 +L LF + R M+ + L L Q R R R Sbjct: 777 VLFD-AHLAMGGSVLTLFTNRRDMEDLYARVEPKMARAGLELNCQQRNSSPR---RLRDR 832 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 N S L L++F EG D G+ L V I K+ F P+ + Sbjct: 833 FINEPTSSLFALKAFWEGFDASGETLRCVIIPKLPFSSPTDPLSCERNLREDR----AWA 888 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 SLP A + Q GRLIRS G +++ D RL+TK YGK+ L +LP ++ E + Sbjct: 889 RYSLPEAVLEVKQAAGRLIRSSTDCGVLILADPRLVTKGYGKKFLTSLPTSSYQRIESAQ 948 Query: 700 GIVKKKEKTKSPRRRR 715 + RRR Sbjct: 949 IGHYLQLWRARHERRR 964 >UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8P3_9BACT Length = 646 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 171/695 (24%), Positives = 274/695 (39%), Gaps = 65/695 (9%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 L ++P+F R QR++ + L + R LA EAPTGVGKT + LIP Sbjct: 1 MEDFFGPEGILNARLPNFEYRRQQRELAEKIENFLQSD-RRLLAAEAPTGVGKTYAMLIP 59 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + A T++V T+ + LQ+Q+ KD+P L ++ DL + GRG Y C R Sbjct: 60 AMRWAVANNSTVLVLTSGITLQEQLIYKDIPALLDVLGLDLPYGLLKGRGNYACIRK--- 116 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + E + L F D+ + A GDL + R Sbjct: 117 --AREIGAEGFLDFGGDKGQASRDISGWLYATETGDLSE---------LSLGDTHPARER 165 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 +++ +CL C ++ C + R + V+VAN+ + + + + LL+ Sbjct: 166 IASSYLTCLGPYCPHHERCFYNKVMRSLSHWRVIVANYHVYFSYVLGQRKPFPAPFGLLI 225 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 DE H + D AR ++ ++ + L +L R P +R Sbjct: 226 CDEAHKMEDAARAVTQVGVDVRDW--QRLLRRAPRLDKVEASLLRSVDCP----ADRFAE 279 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 +L + S+ + L +P G+ EL ++ E+ + ++ L L E Sbjct: 280 EVADLSRVSESVFDQLAARLPDGKN--FTAYPPELKNDTAELLVKCDRIIGHLDELQEAA 337 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 + D R+ ++ L + P +WA E Sbjct: 338 AGGGRDANALQDDGRIAVWNGELTAFRD---------SLRWCCDTQNYP--EWAYWREGG 386 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + SD + +I SAT+ SF +GL A D Sbjct: 387 -----SLKSSCVNGSDLIPPAFDDDEIKVIALSATMTVDRSFEYWANETGL---APDETA 438 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK-------HLGMLV 539 LDSPF+ +I + + ++ +A + + ++ L V Sbjct: 439 VLDSPFDLPSLMEIDVVDLGLQVMSPGYADAVARVCRKYARENGGATLILLSSRRLLTAV 498 Query: 540 LFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 ++ M RL +LVQGD PR L+EL ++ ERSVLVG+ SF EG+D Sbjct: 499 --SAYLKMNA-----EKDRLNILVQGDLPRTELLELFKE----NERSVLVGMASFREGID 547 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 + G+ L+QV I +I FP PV K R F LP A L Q GRL+R Sbjct: 548 VPGEALTQVIIDRIPFPHPGDPVGEARA---KLEGRENFVKAVLPGAKMQLRQAAGRLVR 604 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 + G VVI D R++T+ K +LD+LP P+++ Sbjct: 605 TGSDRGRVVILDGRIVTRPDWK-ILDSLPAVPVKK 638 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 144/702 (20%), Positives = 262/702 (37%), Gaps = 45/702 (6%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ + +E +++ +EA TGVGKTL YL P +A K +VVSTA Sbjct: 270 RPVQAKMMNSIYNNYTHDEPKNMIVEAGTGVGKTLGYLFPLSYVA-YPDKKIVVSTATNI 328 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 LQ QI + L K++P + G Y+ S + L+ L ++ Sbjct: 329 LQQQIIDTSIAQLNKVLPFKMNSVIIKGNAHYIDIARFVHSLSVIEDSK-LVQLLKAKIL 387 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 + GDLD + + + + LN +Y + Sbjct: 388 V------WLLSTQSGDLDELNLN--------SQQSPYFTEIRHQGIRSLNPVNAFYHDDF 433 Query: 207 FFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE 266 + + +A++++ NHA ++A ++ + + LV+DE HL + Sbjct: 434 LVRREKRLHQADIIITNHAYLVAH--AQELGDGTRRPYLVIDEAQHLSESILK--RSRRT 489 Query: 267 ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI----PERLNAHCEELYELIASLNNIL 322 R + + + LV ++ A+ E L + E + L Sbjct: 490 FNFQKLRTAVHVMSGLVNNGNDRNLTDIFAEQALGSYNVELLRGDLNAVEEAVDLFQQAL 549 Query: 323 NLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF---------LNDLSEK 373 A + + E P ++ L ++ L + L+ L Sbjct: 550 YRQYMASATSNPDNELIEQPLRNDQVMSLLDISGPVMMKLEQALSSVQLHFSALSHLFSS 609 Query: 374 TGSHDIVRLHRLILQMNRALG-MFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 ++ L+ Q L + EA L Q G W T + Q L Sbjct: 610 QPDRWLLSDRYLMSQFQSQLAKLIEADQTLNEFNETLQQQGEAAAFWITIRQSSEQSALQ 669 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPF 492 + + L + ++ + ATL + L L E+ SP+ Sbjct: 670 LSGGLLEATHYLTKNVYPYFAQPLFVGATLFTSPRSPYLYHQLDL-ERNNTLTRRFASPY 728 Query: 493 NHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD 552 N+ + K++I PS N +I ++ + ++ + ++LF S +++ Sbjct: 729 NYKQNAKLLIAEDAPVPSAQNNSDYIKYLSDTIYQLTKNADYQ-TMILFNSLVMIEQIYS 787 Query: 553 YVTDLRLM----LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 + + L +L QG + K+ + G+ S+L+G SF EG+DL L + Sbjct: 788 QLRETDLFDQRDILAQGITGNRDKI---LKQFSGGKNSILLGASSFWEGIDLPESALELL 844 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I ++ F D + + L+ + PF LP A+ L Q +GRL+R+ G V Sbjct: 845 IITRLPFDSPDEIMNRAHNKLLQQQGKNPFYHSELPKATMRLRQGIGRLLRTEDDHGVAV 904 Query: 669 IYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTK 709 + D RL T+ YGK +L +LP P+ + + I ++ + Sbjct: 905 VLDPRLQTRRYGKTILSSLPTDLPVNSKKTADLISITQKFLR 946 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 161/698 (23%), Positives = 289/698 (41%), Gaps = 41/698 (5%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F RA Q +M+ V + L IEA TG GKTL YL+P +A +K +++ST Sbjct: 261 FAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSYLAT-PEKPVIISTV 319 Query: 85 NVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 ++ LQ+Q+ KDLPL +I L+ Y+ + A + +PT Q A Sbjct: 320 SIVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQCFKATLN-QPTPQKQYALYQM 378 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 + E + GDLD + L + W+ ++ L++ Y Sbjct: 379 GVLVWLLETE------TGDLDELQLTNL--------NHLFWKEVTHRGLDFLSKKDELYE 424 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEM 263 +++ ++ V++ NHA + + L P++ L++DE HHLPD+A Sbjct: 425 VDFLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLL-PESPWLIIDEAHHLPDIASRM--A 481 Query: 264 SAEITAPWYRLQLDLFTK------LVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 S + + + Q+ F + + +QF + + L +E + + Sbjct: 482 SERVNSVILKKQVTHFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFE 541 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 L+ + + E + D + ++ ++ ++L + L + S Sbjct: 542 LHRLFSKTQKRIDHQELLLTKERI-DYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQ 600 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 + R F+ ++ S+ P +W + + H Sbjct: 601 LETFSLADRIVFVRLFQFFDEIERIHHCFSIYLDDWRP--RWVKEYLPQNEDHGLIEIHD 658 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + S E + II TS TL+ N+ L + GL E F L +P+N+ E Sbjct: 659 LEASLLPETKWYPRYERIIYTSGTLKFGNNKKYLPQRLGLTEVT---FKTLPTPYNYAEN 715 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-- 555 ++ +P V + + ++ K + +++ MLVLF S + V Sbjct: 716 ARVYVPEEAVAIQNASSYEMGQYISDTIEKLM-AQEERSMLVLFTSHELLSTVYHQVQPR 774 Query: 556 --DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKI 613 + +L QG + KR +NG+ +VL+G SF EG+DL G L + + ++ Sbjct: 775 LLEKGQEVLAQGISGSREKI---LKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRL 831 Query: 614 AFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 F P+V + +L++ PF +++P A+ L Q +GRLIRS G ++I D+R Sbjct: 832 PFENPKRPLVQAKYAYLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRR 891 Query: 674 LLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKS 710 L+T YGKRL+ A P +++ +PE + + KE Sbjct: 892 LVTAKYGKRLIKAFPKGLSVKEAPMPEILEELKEFLNK 929 >UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCJ4_9GAMM Length = 643 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 154/704 (21%), Positives = 276/704 (39%), Gaps = 79/704 (11%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 ++ A + Q P+F+ R Q+QM V +++ ++ L +EAP+G GKTL+YL+P + Sbjct: 9 ELLAAGGPIDRQWPEFVAREGQQQMAIRVQQSI--DDQVSLLVEAPSGSGKTLAYLVPIV 66 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALA 128 A + ++STA+ LQ Q++ DLPL++ ++ K GR Y+CP L Sbjct: 67 MTA----QRAIISTASRYLQSQLFKHDLPLIQGLLGSHRKVALLQGRSNYLCPYYLDKNT 122 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 ++Q+ D + +R G + L ++ Sbjct: 123 LRLRSEQESSGGYDRQSYQQLTRLSQRFRNTG--------IGELSLLAPELAPGLLPHVT 174 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA--MESEAVL-PDPKNLLL 245 + + CL+ C + CP AR++ + A++V+ NH+L+ + M E + P ++ Sbjct: 175 SSRDDCLSTQCPDFSRCPLMAARQQAEGADIVIVNHSLLFSDQVMRKEQLGSLLPSAGVV 234 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 V+DE H + D A+ + + L + V+ ++ P+ L+ E+L Sbjct: 235 VVDEAHRISDFAQTIVGLRLS------SGTLKSLCRDVSRAIQVGAPEQRLILSRLEKLQ 288 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 + +L I S + +++ +L+ LR + Sbjct: 289 SGLSKLDAHIPSAKPYHRQ-------------------QHVDVINQLSIALRQLRRDLNI 329 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 K H V+L + L + L W E Sbjct: 330 V------KQRDHSFVQLEIRTGLIVDRLNEIVSYKGL---------------CWVQGREN 368 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 + + +S ++ L +S I TSATL +S R + + GL F Sbjct: 369 G----FVIQTIPLTISLLIKELFQQSPCSWIFTSATLTVNSSPDRFKRVLGLDA---VNF 421 Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 S + Q + P++ V+P D + E + + +L LF+S R Sbjct: 422 YQASSDIDFQRQAMLYTPKIPVDPRKDEFYDYYVEQLLPLLAAAKGR----VLCLFSSYR 477 Query: 546 AMQRFLDYVTDLRLMLLVQGDQPRYRLVELHR--KRVANGERSVLVGLQSFAEGLDLKGD 603 + + +L+Q R V+ ++ ++ N + +L+ SF EG+DL G Sbjct: 478 GLNATASRLRRKGKAVLIQRSPRDPRRVDNYKLVAQLKNQPQGILLATGSFWEGVDLSGF 537 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I K+ F D P++ + L F LP A L Q GRL+R Sbjct: 538 PLSAVAIDKLPFAHRDDPLIQLRSQELSGHGVDSFSEYLLPDAIVRLRQGCGRLLRRVSD 597 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFP--IEQPEVPEGIVKKK 705 G ++I D RL ++ YG+ + +LP + E+ + K Sbjct: 598 RGVIMIADPRLQSQAYGQDFMASLPSMRRAVTVSEIESFFSESK 641 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 156/702 (22%), Positives = 270/702 (38%), Gaps = 62/702 (8%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 A ++ + + D+ PR Q+ + + + + +G +EAPTG GKTLS Sbjct: 222 KAPRVSEFFKEGGFISFVVDDYKPRHNQQDFASVMERNMY--KGGLCVLEAPTGSGKTLS 279 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPR 122 YLI A + +++STA LQ+Q++++ +P + KI +L+ GR Y+C R Sbjct: 280 YLITAANKAI-TGERVLISTATRTLQEQLWTEAIPQIAKIYNGELRPAILKGRDNYLCLR 338 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWD-GLRDHTDIAIDD 181 L + + + +E A + L T D + + + Sbjct: 339 KFEEL------------LMHPQTLLSAEERDSFMALIPWVLSTETGDINECNSFSQSRNR 386 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK 241 LW +LS + C N ++ CP +A+R+ A +V+ NH+L ++ ++ + L P Sbjct: 387 VLWSKLSCSASCCNGENHSHHENCPALIAKRKAMNANMVLVNHSLFLSDLQLDFALL-PS 445 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 +V DE H LP+++ S +R A A Sbjct: 446 YEHIVFDEAHRLPEISNQVFGRSISFFG--FRNIAKTLEPSKAGGDGLIAEIASRIPAEK 503 Query: 302 ERLNAHCEELYELIASLNNILNLYM-----PAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L+ C++L E + L+ + ++ R + E A Sbjct: 504 PELHEICDKLSEALGEAEKALHRFFMKIGKKLAKQKNGRSGFTYTNSILAEYEADPATFL 563 Query: 357 EM---LRGLAELFLNDLSEKTGSHDIV-RLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 E RG AE + + G IV L + +++ + FE +K R Sbjct: 564 EQYNNARGFAEKLVAATANMDGLKGIVSDLDSRMTEISHFISDFEFVTKAGR-------- 615 Query: 413 GAPVTKWATREEREGQLH-LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 W E H + H + + + + I TSATL + Sbjct: 616 ----NDWVFYMEEPFNPHTIKLHALPLHSGNVWREKFYPWIKSATFTSATLSVQADLTYF 671 Query: 472 QEMSGLK-----EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 + G+ ++ R S + E+ +++ + +PS + + Sbjct: 672 LQKMGMDNLRLGKQPFVRVYTEQS--DVNERRSVMVAKFLPKPSAPEFGDALNDTLLKVL 729 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVELHRKRVA 581 VE +VLF S M + + + +LL Q D LV + RK Sbjct: 730 PNVEE----NTMVLFTSVATMMKAQAALAPAFAERNKLLLCQHVDGSLDGLVAMFRKE-- 783 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 + L+G QS EG+D GD L + I K+ FP P+V +K+ N+ F+ Sbjct: 784 --RGACLLGCQSLWEGVDFPGDALKLLVITKLPFPNPSDPLVAGLTNEMKAANKNFFKDY 841 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 +P A L Q +GRL+RS G+V+I D R++ + YGK Sbjct: 842 FIPEAYIELRQGMGRLLRSDSDSGKVLILDNRVVLERYGKTF 883 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 149/713 (20%), Positives = 277/713 (38%), Gaps = 47/713 (6%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEG---RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 P R Q +M+ + A + + L IEAPTG+GK+L Y +P +A QK + Sbjct: 257 PHLESRIEQNKMMNMIYNNYASDGHHPAKPLVIEAPTGIGKSLGYSLPFSYLASA-QKPV 315 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 V+STA LQ Q+ ++ LPLL + +P + G Y+ L + Sbjct: 316 VISTATTYLQFQLQNQTLPLLNQSLPFKINSVILKGASHYIDLNKFRHLLFVADSS---- 371 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 Q GDLD H ++ +W + L+ N Sbjct: 372 ---VQTAFIKAQILVWLTMTTTGDLDEL-------HLNVEQTPFVWT-IQHSGVKWLDAN 420 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 +Y E ++ Q A+ ++ NH+ ++ + + P L++DE + A Sbjct: 421 SPFYDEDFLRYNLKKAQNADFIIVNHSYLLKNWQFFSGFPVKPY--LLIDETQQFAETAI 478 Query: 259 DALEMSAE---ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 + + + R++ D+ + + F ++ + + L+ ++ L+ Sbjct: 479 RNNQKQINPLTVMSAVNRVRGDIQEGHYKSARDAFSGNSVLNNS-ADDLDESLNQIKSLL 537 Query: 316 ASLNNILNLYMPAGQEAEHR-------FAMGELPDEVLEICQRLAKLTEMLRGLAELFLN 368 L + L M A Q+ + +L + E + + +L + + +L + Sbjct: 538 KQLTHRLYSQMIANQQLHKNASFFVRLIPISDLKAIINENRETITRLQDKQSEVEDLLIR 597 Query: 369 DLSEKTGSHDIV--RLHRLILQMNRALGMF-EAQSKLWRLASLAQSSGAPVTKWATREER 425 SE S D R + I F E + L + +S+ W T Sbjct: 598 LNSEIDHSTDAFTNRDYSSIYDFYEDFNEFAEKLTFLLSTIDMDESAINQNVVWVTVNHV 657 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 + + ++ D L ++ S T AT+ S + + G+ KA Sbjct: 658 KDINSFTINQGILKTEDYLNHRIYASFEPPTFTGATIFSSRRSQFIFNLLGIDRKAAS-V 716 Query: 486 VALDSPFNHCEQGKIV-IPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 L S F+ Q +I I + E I N + ++ ++A K + LVLF S Sbjct: 717 RRLQSDFDPKNQARIYLIDKQSREHFITNSDDYLQQVAQSIEK-IYQASPRQTLVLFNSL 775 Query: 545 RAMQRFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 +A+++ +++ ++L QG K+ + E ++L+G +F EG+D Sbjct: 776 KAIKKTHQFLSKDGFTATHLVLAQGVNGTAA---RLSKQFIHNEPAILLGANTFWEGVDF 832 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 LL + I ++ F + P +S + PF +LP A+ L Q +GRL+R+ Sbjct: 833 PAHLLENLIIAQLPFDTPEDPYNHALYSVERSKGKNPFYSLALPKATLRLRQGMGRLLRT 892 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKSPR 712 +G + + D RL TK YG+ +L L P+ ++ + I + +S Sbjct: 893 KADYGTIFVLDPRLTTKRYGQTILTNLKNEIPVMTGQLDDCINDMVKFFESRN 945 >UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUZ2_ACIC1 Length = 710 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 149/708 (21%), Positives = 253/708 (35%), Gaps = 125/708 (17%) Query: 42 LAGEEGRHLAIEAPTGVGKTLSYLIPGIAI------AREEQKTLVVSTANVALQDQIYSK 95 L+G + RHL ++A TG GK+L+YL+P + A +E++ ++V+TA +ALQ Q+ + Sbjct: 41 LSGGDKRHLLVQAGTGTGKSLAYLVPAMWHVTARDDADDERRPVIVATATLALQRQLVER 100 Query: 96 DLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQ 150 DLP L +++ L F GR Y+C L + DL D L + Sbjct: 101 DLPRLVEVLSPLLPRRPTFAILKGRRNYLCRLRLGGSDQPDLLADDLDVLPMDALPMDVA 160 Query: 151 EEQKRCAKLKG---------------------------------------------DLDT 165 A+ K Sbjct: 161 RAGAAPAREKTGGAGVIAAGLPGTANVRQGTGESPDAPAAGFLAWSALGREVARITSWAN 220 Query: 166 YKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYYYRECPFFVARREIQEAEVVVANH 224 G RD + + W + + C+ C + C +AR +A++VV NH Sbjct: 221 ETSTGDRDELVPGVSERAWGQFAVTARECVGASRCPHGSRCFSELARIRAGQADIVVTNH 280 Query: 225 ALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 A++ + +A + P++ ++++DE H L D Sbjct: 281 AMLAVDVLGDAPVL-PEHDVVIVDEAHELVDRVT-------------------------- 313 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 + L + L + A ++G L D Sbjct: 314 --------AAATAELGAADVVRVANRLRTFASVAAGRLERAVGEFDAALRDVSVGRLIDL 365 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 + L+ + + R L +++ R A +L+ Sbjct: 366 PERLVTVLSGIRDAAREGVSALLGEITVD----------------GRRAQARAAAEELFD 409 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 AS + + +W R++R G + + V+ L ++ S ++TSATL Sbjct: 410 TASRFLAGDSGDVRWLDRDDRGGAV---LRAAPLDVAPLLRNAIFASRI-AVLTSATLTV 465 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMAA 523 SF + E GL R + + SPF++ QG + + P D + E+ A Sbjct: 466 GGSFHPMIERLGLH--HDVRTLDVGSPFSYQRQGILYVASHLPPPGRDGISADALEELVA 523 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVAN 582 + L LF+S RA Q + + +L QGD L+ +R A Sbjct: 524 LM-----TAAGGRTLGLFSSMRAAQEAAAFARERVDFPVLCQGDDATAELI----RRFAA 574 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 ++ L G S +G+D+ G V + +I FP D P++ + + F + Sbjct: 575 DAQTCLFGTLSLWQGVDVPGAACQLVVVDRIPFPRPDDPLMAARQQAVTEAGGNGFLQVA 634 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 A+ L Q GRL+RS G V + D RL T Y + L +LP F Sbjct: 635 AGHAALLLAQGCGRLLRSPHDRGVVAVLDSRLATARYARFLRSSLPPF 682 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 160/724 (22%), Positives = 274/724 (37%), Gaps = 92/724 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ D+ + G+E + L ++APTG+GKTL YL+PG A +E + VVST+ A Sbjct: 289 RKEQAKMMNDIYEHFNGDE-KMLLVQAPTGMGKTLGYLVPGAYQA-QEGASTVVSTSTTA 346 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 L DQI + +PLLKKI+P D + G G Y+ + Q L + Sbjct: 347 LLDQIVKESVPLLKKIVPFDFTYEVMKGSGHYIDLEKFSHTLKIPMNNQTRLLQM----- 401 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 + GD+D + R L++ + L+ +Y Sbjct: 402 ---RILSWLWQTTTGDMDELRLTTYRA--------QLFKMIKHAGVGSLSDKSAFYGLDF 450 Query: 207 FFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA--------- 257 + ++ A+ V NH+ ++ E K L+LDE ++P VA Sbjct: 451 VRLRDVRVKFADFVFTNHSYLVRHAEEIG----KKKANLILDEAQNIPSVAMEQGGSVFD 506 Query: 258 -------RDALEMSAE---------------ITAPWYR---LQLDLFTKLVATCMEQFRP 292 D L +S E +T YR + + V E+F Sbjct: 507 FDLVKIYSDTLLVSMESRISFSFEGLIRQHFLTKNEYRTILRNIQIIDHSVPFIREKFWE 566 Query: 293 KTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRL 352 + + ++ E E + S N +L L + E L+ + Sbjct: 567 RYVRTKGGSKK------EFVETLLSPNKVLGL-------------LKENFAIFLKTTKAY 607 Query: 353 AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 +L + + + F L T H+ V L L + E+ K W L ++ Sbjct: 608 TELLGQMTEMKQRFFRALDAGTLDHEAVNL--LTDWFIDCEKLVESMEK-WHLLEFSELE 664 Query: 413 GAPVTK--WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 T W + HL + LE ++ HI++ A L + + Sbjct: 665 KMDETTLVWMKHSPNNPKTHLRLCFSRLEAGKYLEERVYGYFKHIVMCGALLFTKKTEDY 724 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 ++ L + + S F++ Q + V + S + + Sbjct: 725 TKDQLRLDDDVLTK--RYQSEFDYAHQARAVFATDSPDLSSMLSKAEYHAYLTDALSDII 782 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 K L LVLF S ++ + ++ + + +L QG ++ ++ V +S Sbjct: 783 EKTSLQTLVLFNSLEDIEAVYNGLSIRGLNKKREILAQGVNGTPEKLK--KRFVLTSSKS 840 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 +L+G SF EG+DL D L + I ++ F DS + +++ PF SLP A Sbjct: 841 ILLGAGSFWEGIDLPEDKLELLVITRLPFQSPDSLINKVRYRNVQAKGHNPFSAVSLPEA 900 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEG--IVK 703 + Q GRLIR+ G + + D R++ K Y D LP I++ E+ + I++ Sbjct: 901 ALKFRQGFGRLIRTKDDHGILAVLDSRIVNKRYAHEFTDTLPKDLRIDRVEMKDIPEIIR 960 Query: 704 KKEK 707 EK Sbjct: 961 DTEK 964 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 172/745 (23%), Positives = 279/745 (37%), Gaps = 81/745 (10%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 + A + + LQ + PR Q++M VA + G LA+EAPTG GK+ Sbjct: 309 SPAADAFSAARDAFAVLQTRH-QLRPREAQQEMARAVADVF--DHGGRLAVEAPTGTGKS 365 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP 121 L+YL+P I A + +V++TA LQ Q+ + L + F G YVC Sbjct: 366 LAYLLPAIGRASRPGQPVVIATATKTLQGQLRVEATRLHDDGLLGAPFRQIQGVANYVCT 425 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L S + LA + + T WD + D D Sbjct: 426 RELEDALSDRESSPLALAVALRAIAAS---------------PTGTWDDVTDDVIRRRDT 470 Query: 182 DL---WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVV-ANHALVMAAMESEAVL 237 RL T+ C C + + CP + +A VV NHAL+ + ++++ Sbjct: 471 RYARTRARLRTNAGGCDRTKCVWAQVCPMTQQLNGLDKAPGVVSVNHALIASWVKTDHAP 530 Query: 238 PD---PKNLLLVLDEGHHLPDVAR-------DALEMSAEITAPWYRLQLDLFTKLVATCM 287 D LV DE H L D DALE+ + + R +L + A Sbjct: 531 GDVLTESRADLVFDEAHGLEDSLTAAWTERVDALELDILVNSLSPRSKLMRGIRSRAGTD 590 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE 347 F + ++ + EL + I + L+ Y R + E Sbjct: 591 TSFTEASQAITTSSTQVRSSGAELAQAIET---YLHEYAGKSDSVVLRTGVVNSRPEFRV 647 Query: 348 ICQR-------LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA-- 398 + Q L +L + + L++ + + + L Sbjct: 648 LRQAATAVRYWLIQLAKAVTALSQSLAGVNGTGSARRRLRGYSERLDAAIELLDTMRELP 707 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 LW A+ W + + + V + E+L+ ++ Sbjct: 708 DGHLWVYRLAAEEDDPAA--W------------TYERIPVHVFPEFEQLVVDRTHSTVLC 753 Query: 459 SATLRSLNSFSRLQEMSGL-----KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 SATL + F + G+ + AG R + L SPF++ +Q +++ P N Sbjct: 754 SATLTVQHRFDFIASRLGIGIAADPDGAGFRGLRLPSPFDYSKQSLVILTNHLPVPIPVN 813 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD-------YVTDLRLMLLVQGD 566 E + EMAA + S L LFA+ M+ + + LLVQGD Sbjct: 814 EREFCEEMAAD-QTGFLSLSGGKTLTLFAARTRMEAVAAGVRIRAAELAQRGVELLVQGD 872 Query: 567 QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITE 626 Q R ++ ++R + +VL GL+S+ EG D G+ LS + I K +P D P++ Sbjct: 873 QGRSQI----QRRFRDEPGTVLYGLRSYWEGFDAPGETLSYLFIEKPPYPHPDDPLISAR 928 Query: 627 GEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR-LLD 685 + PF LP + Q GRLIRS G ++ D+RL + +R +LD Sbjct: 929 QRAIADRGDDPFLDYVLPMTAMQFAQGFGRLIRSETDRGAALVCDRRLHSPTQAQRVILD 988 Query: 686 ALPVFPIEQPEVPEGIVKKKEKTKS 710 +LP PE+ E + T++ Sbjct: 989 SLP-----NPEIHEAADRDDAWTRA 1008 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 157/713 (22%), Positives = 269/713 (37%), Gaps = 54/713 (7%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 ++ R Q++M V T G+ +E TGVGK+L+YL+P ++ A + + V+T Sbjct: 322 NYEVRPTQQEMAVRV--TSLQNSGQCGVLEVGTGVGKSLAYLLPSVSRAVQNDIQIGVAT 379 Query: 84 ANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDL--LAF 140 AL +Q+ K+LP L ++ P D + G Y + L E + F Sbjct: 380 KTNALAEQLIKKELPQLHEVYPKDFSYLIVKGAEHYPYLEGIDTLMREEFDTSQFKDIRF 439 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 ++ +L D L ++ D T L+ Sbjct: 440 SSSKIKAEILTTAAIIYSACCELVDVDVDSLGIRWNMIPKGDFVASHRTGSNHTLSTCAP 499 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD- 259 +Y R Q A +VV NHAL+ + VL P ++DE H D RD Sbjct: 500 HYM---LSELRERTQHAHIVVTNHALLATDIALGHVLF-PLVSNWIVDEAHGFADQVRDQ 555 Query: 260 -ALEMSAEITAPWYRLQLDLFTKLVATC--------MEQFRPKTIPPLA-IPERLNAHCE 309 A E+S ++ + + + T L+ + K I A + +L E Sbjct: 556 WAQELSQDVFSDLFYTLGGIKTGLLGDMFSSSSNSEQKPLLQKLISKAAVLVAQLRVKNE 615 Query: 310 ELYELIASLNNILNLYMPAG------QEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 +L++ + ++ + G Q + + + L+ AK + L+ + Sbjct: 616 DLFDCLNTVVLDDRYHFSRGAHTHMIQRVDSSIVSQDAWNAFLDKMSEFAKTFDTLKAVL 675 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 +S + H V R+ ++ LG+ + L Q S R Sbjct: 676 IQLCKAISNEASLHRDVDFKRVCAYVSSYLGV---------ITRLTQGSEDGFVYTVERV 726 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 +++ + + + + +L + ++ TSATL SF GL D Sbjct: 727 KQKKAYQTYLKEMCLDIGKRLYTDWYLDAQSVLYTSATLSIEQSFEYFDHSVGLDRLNSD 786 Query: 484 R--FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 R L SPF++ +++P V P E++I ++ + + +L LF Sbjct: 787 RVETKTLPSPFDYENHMGVIVPNNLVLP---QHEKYIQCLSNLLFD-IHVAMNGSVLTLF 842 Query: 542 ASGRAMQRFLDYV----TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 + R M+ + L LL Q + + + + LV L+SF EG Sbjct: 843 TNRREMEAVSSKLVPRLESHGLTLLEQLPTTSAQQIM---RGFKKDTTASLVALKSFWEG 899 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +D GD L V I ++ F P P+V L + + LP A + Q GRL Sbjct: 900 IDAPGDTLRCVVIPRLPFVPPTDPIVEA----LTERDSSTWWNYVLPRAITEVRQAAGRL 955 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG--IVKKKEKT 708 IR+ G V+I D R+L+K YGK +L ALP ++ ++ K Sbjct: 956 IRTQHDSGLVIIADTRVLSKAYGKHVLHALPNVHHQEISCENMKSYIQMWRKA 1008 >UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=Corynebacterium jeikeium RepID=C8RVT0_CORJE Length = 609 Score = 421 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 148/621 (23%), Positives = 243/621 (39%), Gaps = 38/621 (6%) Query: 26 IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTAN 85 PR Q++M VA+ + E HLA++A TG GK+L+YLIP IA A + ++VSTA Sbjct: 19 APRPGQQKMAKAVAEAIDKEH--HLAVQAGTGTGKSLAYLIPSIAAAMDSDYPVIVSTAT 76 Query: 86 VALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 +ALQ Q+ +DLP L K + L+F GRG YVC + + ++ + Sbjct: 77 IALQRQLVERDLPRLAKALEPELPRPLEFAIQKGRGNYVCLNKVQNAQTESGVEEAEESL 136 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNC 199 LD + R + G+ + DG RD+ + D WR++S CL C Sbjct: 137 LDPSQLSATGAQVARLHEWAGETE----DGDRDNLPQGVSDRAWRQVSVSSRECLGATRC 192 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 + +C AR +A+VVV NHAL+ +A + P++ +++DE H L D Sbjct: 193 PFGEQCFAERARAHAADADVVVTNHALLAIDALVDAPVL-PEHDTVIVDEAHELEDRITS 251 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 +AE++ + KL + + + + E + E L + Sbjct: 252 V--ATAELSPTAIAVLAKRAAKLAVSGADAAGDE------LAEAGDRWTEALK--AEAAA 301 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 + N G E L + + K + G+ + S+K Sbjct: 302 SRNNDRFGTGIEGRWTGVPEALQVPLAALRDAAWKTNRQVSGIPASEFANDSKKVAERLA 361 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSS-GAPVTKWATREEREGQLHLWFHCVGI 438 V + ++N S++ S W T + + Sbjct: 362 VIVA--TEELNDTCVRILNASRVGEGTSADDEDLLGEDVIWYTADSGPRAPKHVVRVAPL 419 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 V+D L + L+ +I+TSATL F+ + GL + + +PF+ G Sbjct: 420 SVADLLRQRLFGR-NTVILTSATLALGGKFTSMLSCWGLPKSTP--TLDAGTPFDARTHG 476 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-L 557 + + R P D + A + L LF+S RA + + + + Sbjct: 477 ILYVARHLPPPGRDRASDASVDETARLI----NAAGGRTLGLFSSRRAAEDMAEQLRTVV 532 Query: 558 RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPP 617 +L+QG+ LVE RK + + L G +G+D+ G LS V I +I FP Sbjct: 533 PYEILLQGEDSMSTLVEKFRK----NQSACLFGTLGLWQGVDVPGKSLSLVIIDRIPFPR 588 Query: 618 IDSPVVITEGEWLKSLNRYPF 638 D P+ E F Sbjct: 589 PDDPLQQARQEAADQRGGSGF 609 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 148/696 (21%), Positives = 276/696 (39%), Gaps = 49/696 (7%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEG---RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 + R Q +M+ + A + +H+ +EAPTG+GK+L YL+P + + + +V Sbjct: 254 NLEWRPEQAKMMNYIYNNYAEADRHPVKHMIVEAPTGIGKSLGYLLPMAYLG-QTGRPVV 312 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 VSTA LQ+Q+ + +PLL +I+P + G Y+ + + T + Sbjct: 313 VSTATTLLQEQLLDQTIPLLNQIVPFTVNAVLVKGSRHYLDLQRFATTLNVAETSK---- 368 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 + GDLD R ++ + + A + + Sbjct: 369 ---QTQLLKLRLLVWLTMTTTGDLDELHLATYRA--------PYFQEIVHEGAVTV--DN 415 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA-- 257 +Y + + +A+V++ NHA + + + LV+DE HL + Sbjct: 416 PFYDDDFIRRRDHRMAQAQVIIVNHAYLSEHALALGEQL--QQPYLVIDEAQHLTESTLK 473 Query: 258 -RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE---ELYE 313 R A++ + +Q D+ ++ + + F T L + L+A +L Sbjct: 474 QRRTQVKFAQLLNELHHIQRDINREIGPSLLRLFAADTQATLTLHRLLSASQTLETQLTT 533 Query: 314 LIASL------NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 L+ L N LN + +E A+ E D I + ++L GL L Sbjct: 534 LVDHLFLRFLANKRLNNHNQVIEELVSAQALTEEIDRSRTIDRATMATDDLLAGLNALRQ 593 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS-KLWRLASLAQSSGAPVTKWATREERE 426 ++ R L Q+N + +F+ Q +L + W T Sbjct: 594 RYDQQQAQFTSAER--YLFEQVNTRVHLFDDQMGQLLEILRQVVDQAPASLFWLTMNHVG 651 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + L + L + L+ +++T ATL S + + L+ + Sbjct: 652 DRTSLQLASGLLATEGFLSQHLYAGFQPVLLTGATLFSSGRSQYVLDQFDLQREQTV-TH 710 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 + S F++ +Q ++++ S ++ ++A Q+ + L+LF S Sbjct: 711 RMRSSFDYGKQAQLLMADSGPNLSRVAPADYVTYLSAAI-SQIAGAVNKQTLILFNSLSV 769 Query: 547 MQRFLDYVTDL----RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 +++ + R + QG E KR A ++L+G SF EG+DL Sbjct: 770 IEQVYQQLVTQPEFARRDIFAQGVSGSR---ERITKRFATSHGAILLGAASFWEGIDLPS 826 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + L + + ++ F D V L++ + PF +LP+A+ L Q +GRLIR+ Sbjct: 827 EQLELLIVTRLPFDSPDRVFVKANYARLEAAGKNPFYNAALPAATLKLRQGIGRLIRTPH 886 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEV 697 +G VVI D+RL+ + YG+ +L ALP P ++ Sbjct: 887 DYGAVVILDQRLVERQYGQSILRALPAELPKTTGDI 922 >UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM22_9BACT Length = 850 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 159/730 (21%), Positives = 291/730 (39%), Gaps = 75/730 (10%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 + + LQ+ + + R Q ++A+++ + +L IE TG GK+++YL P Sbjct: 160 VFSEGGLLQDSMKGYEFRQEQFMTALEIAESIERD--SNLMIEVGTGTGKSIAYLAPVAY 217 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCPRNLTALA 128 VVST LQDQ++ KD+ +LK + DL+ + GR RY+C R L Sbjct: 218 ACISTMNQAVVSTRTRILQDQLFKKDVEILKTFPNLDDLRVSVMKGRERYLCARKL---- 273 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 E L LD+E++ +L G L G D + I +++ R +S Sbjct: 274 -FEVVNLALNKMLDEEMSK----------ELSGILIWSMITGEGDLDPLPIKEEMRRMIS 322 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-----------ESEAVL 237 ++ C R C ++ CP++V R + +++V+ NH+ + + + Sbjct: 323 GNRFDCTRRLCPFFEICPYYVQRENAKSSDIVITNHSFLFSEANIRLSDGDAEEREDIGT 382 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAE--ITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 P+ LV+DE H L A+ E A R + F Sbjct: 383 LLPRFKYLVVDEAHELEASLTQAMSYRFEPYELAGTVRRLIKTVRDSFGFLKRHFDEGF- 441 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 L +L E A+L+ + E + E+ + L K+ Sbjct: 442 --------LRKLWAKLKEATANLDKQSTELVRVTGSPESGSRITFTGKELEVMIPLLTKI 493 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW--RLASLAQSSG 413 ++ L+ + + D+ + I + + +++ W ++A + S Sbjct: 494 SDTLQTHVYIGTQTMQMLD---DVEDRNEKIDGLEAEVSRILTETREWMKQIAGITSSQE 550 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL----RSLNSFS 469 + V E R +L + +D L ++ + I SATL R + F+ Sbjct: 551 SRVIYVNRLERRPD--NLSIISSPVE-NDTLMASIFPDVSVKIFISATLWVYSRGSDGFN 607 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 + + G + + V L + F++ +Q K +P + N ++ E A+ Sbjct: 608 YARRILG--TSSNNEAVRLGTSFDYTQQLKFFVPVDLPDY-FPNSLTYL-ESASDITLNA 663 Query: 530 ESKKHLGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGER 585 + G +VLF S M+ R + D+ + + + D P L + N E+ Sbjct: 664 LNIVGGGSMVLFTSYEDMKWTLSRISGRLGDMSIHIQDREDSPTTILADH-----VNSEK 718 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV----Q 641 SV+ G ++F EG+DL G+ L + ++K+ F D P++ +K + F Sbjct: 719 SVIFGARAFWEGVDLPGEQLRLLIVYKLPFERPDEPLIEAR---IKHYGKRSFVEGMNKY 775 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL--TKNYGKRLLDALPVFPIEQPEVPE 699 P Q +GRLIR+ G V++ DKR++ + Y K+LL +LP Q Sbjct: 776 YYPKMITAFRQGLGRLIRTRNDHGVVIVIDKRIVDPNRVYSKKLLASLPAGTNVQAIASN 835 Query: 700 GIVKKKEKTK 709 I+++ + K Sbjct: 836 RILRELRRLK 845 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 133/698 (19%), Positives = 285/698 (40%), Gaps = 53/698 (7%) Query: 26 IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTAN 85 R+ Q +M+ D+ L ++ + +A TG+GKTL YL+P A EE +V+STA Sbjct: 254 EWRSSQIKMMDDINNDLNEKKSKIYIYDAATGIGKTLGYLMPIAYKATEE--KVVISTAT 311 Query: 86 VALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 LQ+Q+ KD+ +LK++IP +L G Y+ S +++ Sbjct: 312 TTLQNQLVDKDISILKEVIPFNLNIVNLKGSQHYIDIDKFYQSLSIPQSKK--------A 363 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 GD++ +++ D ++ ++ LN+ +Y Sbjct: 364 TQIQMTLLVWLMETSTGDMEELNL--------LSMQDTIFAQIEHHGIRGLNKKSAFYSV 415 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPD--------- 255 + A +++ NHA +++ ++ + +L++DE HL D Sbjct: 416 DFLKRQEILRRHANIIITNHAYLLSHVDKLGG----NDTVLIVDEAQHLNDNLLKENRKT 471 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 + D +++ ++ QL + + + + + + ++ L E+ Sbjct: 472 IDFDQIKIISDSLLVKMESQLSFSFRDLVEINFITKAQYTELIRPIQTIDYEIMNLREIF 531 Query: 316 -----ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 +++N ++Y+ + + M + L I +++ K + L+ L F Sbjct: 532 MTYLNSNMNKASDVYVEVPIKPLNLIGMIKAN---LFIFKKIEKALKNLKRLQNKFSQKY 588 Query: 371 SEKTGSHDI-VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK--WATREEREG 427 S + + + +LI + L + ++ K W L + T+ W T R+ Sbjct: 589 SMAIVTGRLGLDEIQLINDYQKLLNLLLSEMKSWSYLDLNRLEDELETEFIWLTYPYRQE 648 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 HL + + + + L +++ +++ A L + + L + + Sbjct: 649 NGHLRLNFIMLDGENFLNDKVYQKFSTVLLVGANLAMKETRGYMFRQLDLNGQV--KIKK 706 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 D+ F++ +Q + I + + + +++++I ++ K + S + ++LF S + Sbjct: 707 YDNIFDYSKQTRAYILKDTPDITSISKKEYIEYLSHDLEKILLSN-NRQTMILFNSLEII 765 Query: 548 QRFLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + + + +L QG VE +KR GE +L+G +F EG+DL + Sbjct: 766 ESVYPKLVKKIGSKREILAQGITGS---VEKIKKRFMLGEGKILLGAGAFWEGIDLPENN 822 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L V + ++ F D+ + L+ F +LP A+ L Q GRLIR+ Sbjct: 823 LEMVIVTRLPFQSPDTVLNKARYRKLEKKGINSFYNLALPEATLRLQQGWGRLIRTPKDK 882 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGI 701 G V+ D R+ KNYG++ + + P ++ ++ + + Sbjct: 883 GIFVLLDSRIANKNYGEKFISSFPDGVNLKSLKIDDLL 920 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 169/733 (23%), Positives = 267/733 (36%), Gaps = 57/733 (7%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 + + AL++ F+ RA Q + VA+ L+ +G LA+EA TG GK+L+Y Sbjct: 272 PDEVSALLGVGGALEQAGEGFMSRAAQLDVAQAVARALS--DGGQLAMEAGTGTGKSLAY 329 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRN 123 L P A + + V+ LQDQ+ KDLP L + + G+ Y+C R Sbjct: 330 LAPAALFAARNGRKVGVAPHTKTLQDQLLEKDLPRLHRATKGAFGYALLKGQTNYLCRRR 389 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY-KWDGLRDHTDIAIDDD 182 EP P +GDLD W R + Sbjct: 390 ALEATRVEPGMG------HSARAPRAYLRAYLRRSGEGDLDRLSHWFRER----FPVLMA 439 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKN 242 L + ++ ++ L C ++ C + A + +EA+V++ N +L A PK Sbjct: 440 LVPAVRSEASTTLGEKCPHFHRCFYHSAVAQAREADVLIINQSLAFAWPARY-----PKL 494 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 LVLDE H + DVA AL + A ++ + R Sbjct: 495 DHLVLDEAHEVEDVATTALTLELSDLAFLRLIERLHGRDGRRGLFAELRKALSASRRTET 554 Query: 303 R--LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE--------------VL 346 R + + L L+ ++ + A+GE PDE L Sbjct: 555 RSLMGEVEDGLRRLLDDARDLGARVTELCEPTA--TAVGEDPDEGAYSPELRITATVRTL 612 Query: 347 EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLA 406 + + + E +RG + LS + + R G +L LA Sbjct: 613 PAWEPVREGLEGVRGALQALHVLLSVRVLAALPELAARQPALERELSGATTELGELAVLA 672 Query: 407 SLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN 466 AP +A E + Q + VS + + S +++ SATL + + Sbjct: 673 GELSGEAAPGRCYAATAEPKRQ-RWSLSAQPVDVSAYVSKDFAESKRTLVLASATLGTGD 731 Query: 467 SFSRLQEMSGLKEKAG---DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 F + GL + G R V +PF EQ +V+ E+ E A+ Sbjct: 732 GFPFVLRRLGLDGRGGRPAPRLVRAATPFKLHEQALVVLVTDAP----RAHEEAFVEWAS 787 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQR----FLDYVTDLRLMLLVQGDQPRYRLVELHRKR 579 + +L LFAS R M+R + L + +L Q L K Sbjct: 788 LRISGLAQTMGGRVLGLFASTRRMERVGTSVRGRLDPLGIEVLRQSRGHSRSLAARQEK- 846 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY--P 637 +VL+G +SF +G+D+ G + V I K+ P P+V E L Sbjct: 847 ---DTGTVLLGTKSFWQGVDIPGRGVGCVFIDKLPLEPAMRPLVAAREEPLSRSGGEYMG 903 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEV 697 F LP A L Q VGRLIR+ G V+I D +Y L++AL + +E Sbjct: 904 FLHYRLPRALLQLRQGVGRLIRATTDRGVVIISDP--GHPSYRGHLMNALEGYRVEALPW 961 Query: 698 PEGIVKKKEKTKS 710 + ++ K Sbjct: 962 AQARLRIHAMLKE 974 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 144/688 (20%), Positives = 257/688 (37%), Gaps = 44/688 (6%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P R Q M+ + E L IEA TG+GKT+ YL+P + K LVV+ Sbjct: 256 PHLKWRKAQATMMDLIHDNFESETPEPLLIEAATGLGKTIGYLLPYSYRMSRDHK-LVVA 314 Query: 83 TANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 T+ LQ+QI ++ PLL++++ + Y+ L+ P + ++ L Sbjct: 315 TSTTLLQEQILTQAKPLLERLVGRQINAAVVKSASHYIDLHRFE-LSLRLPHKNRMIRLL 373 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 ++ GDLD + + + + LN + Sbjct: 374 QMKILV------WLTQTTTGDLDELNLTSYK--------TPFFVSIQHRGLASLNPQAPF 419 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 Y E Q+AE++V NHA + + + + + LVLDE ++ + Sbjct: 420 YHEDFLRRLTHRQQQAELLVTNHAYLASHADEQQIWGPKPY--LVLDEAQNMVFNVQTIS 477 Query: 262 EMSAEITAP--WYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 + + +++ W + L T + + P P + L+ +L +A L Sbjct: 478 QETWSLSSWQFWAQKGLQYTTGAQTNNLVRLFPAETPQNRSLKLLHKTLGKLTRTLAHLE 537 Query: 320 NILNLYMPAGQEAEHRFAMGEL--PDEVLEIC----QRLAKLTEMLRGLAELFL------ 367 L + + + PDEV++ + +L L + + FL Sbjct: 538 TYLTEQFEPDEPTDGQTFSERYLNPDEVIQFVNASQREFGQLNRELLTIQDHFLALRYAL 597 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG-APVTKWATREERE 426 D + D+ ++N L + + +L + + TR + Sbjct: 598 EDQLARYTESDLAIWQSFENELNLLLADVDHYQRFEQLFIATKPQERHALAIQITRPSQP 657 Query: 427 GQL-HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 QL H + Q++++L + +T ATL F L+ G E+ + Sbjct: 658 SQLPQFKLHWQLLSAGPQMQQVL-SHFEPVTLTGATLAVNGHFDYLKREFGFTEEQALQT 716 Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 L SPF +Q + I + ++AA + + H L+LF + + Sbjct: 717 KKLRSPFRFKQQARFYIAEDGPVQKELTPSDYHQQVAAQVMTLIANNPHQ-TLILFNANQ 775 Query: 546 AMQRFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 +++ + L +L QG + KR G SVL+ SF G+D Sbjct: 776 TLEQVYYALGRAGLSLDREVLAQGITGSAEKI---TKRFMLGHDSVLLATSSFVSGVDFP 832 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 L V + ++ F ++ L + PF+ ++LP A+ L Q GRLIR+ Sbjct: 833 EAALEMVILVQLPFDAPNALQTRVRYAQLAAQGINPFKAEALPKATIRLRQSFGRLIRTP 892 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPV 689 G + D RLLT YG+++ ALP Sbjct: 893 NDHGLFICLDPRLLTTQYGQQMRRALPA 920 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 149/712 (20%), Positives = 261/712 (36%), Gaps = 49/712 (6%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P + R Q +M+ + T A + L IEA TG+GKTL YL+P +A EQK LVV+ Sbjct: 248 PRYRFRKAQAKMMDAIF-THAQKTEIPLFIEAGTGLGKTLGYLLPYAYLATPEQK-LVVA 305 Query: 83 TANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 T+ + LQ Q+ ++ +P L ++ L Y+ A E + Sbjct: 306 TSTLVLQTQLITQAIPELDALLGRTLPTVELKSPQHYLDLNKFAASLHQEGPTRQTQLLQ 365 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 L GDLD R L+ + + Sbjct: 366 MKLLV-------WLTQTTTGDLDELHLTTYRA--------PLFAEIRHSGDVGTPFINPF 410 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPD--VARD 259 Y + + ++ +A VVV NHA + A K LV+DE H D A Sbjct: 411 YTFDFYRRLQAKLADAVVVVTNHAFL----SRHADTLPFKRPFLVVDEAQHFADNTAAAF 466 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 A ++ + L + L + ++LN + +L Sbjct: 467 ARRVALDHLNHQLHRVWQLSEPDERHSLTAIYQSEPAMLTVLQQLNQQAATAETAVNTLQ 526 Query: 320 NILNLYMPAGQEAEH----RFAMGELPDEVLE-----ICQRLAKLTEMLRGLAELFLNDL 370 ++ + G+ ++ + LE + L K+ L + D Sbjct: 527 RQIHRHFFFGKTTAASGFVNLSLDSAAAKWLEQTQTATIKSLIKVLGRLTVTTDKLTADF 586 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 + + + + + + + L L S A + R+ Sbjct: 587 NRRPHFFLKSDGQQFQALAALRIALADHRQLLQELLSRLPDLIAGQAVIMSVNLRQITDV 646 Query: 431 LWFHCVG--IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL 488 +V +++L+ + ATL + SF L G E F+ L Sbjct: 647 ASLELSWDVFQVGSAVQQLI-HHFEAPVFVGATLTAERSFDFLTAQLGYHELPESSFLKL 705 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SPF++ +Q K+++ + +++ + +A + ++ +VLF S ++ Sbjct: 706 RSPFHYRDQAKVLVATDAPHAADVSDDAYADYLAMAIEQLADN--QYQTIVLFNSLSVIE 763 Query: 549 RFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + + LL QG + KR A GE+S+L+G SF EG+D L Sbjct: 764 AVYQRLIHRPIAGHKELLAQGVTGSAEKIA---KRFAVGEQSLLLGAASFFEGIDYPDRL 820 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L V + ++ F ++P+ ++ PF +LP A L Q GRLIR+ Sbjct: 821 LEIVILTRLPFDAPEAPITKARYRQIQLSGGDPFTEDALPRAILRLRQSFGRLIRTETDR 880 Query: 665 GEVVIYDKRLLTKNYGKRLLDALP---VFPIEQPEVPEGIVKKKEKTKSPRR 713 G +I D R +T YGK++ +LP + ++P G ++ ++KS R Sbjct: 881 GAFIILDPRFITTAYGKKMQKSLPNIKPMTLPLTDIP-GYIRMWLRSKSANR 931 >UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUZ3_SYNAS Length = 917 Score = 394 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 153/691 (22%), Positives = 264/691 (38%), Gaps = 73/691 (10%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE- 75 L F R Q VA+ L +G L +EA TG GKT YLIP + Sbjct: 257 GLAGAAQGFKFRKTQLDYAFHVAEAL--NDGAVLTLEAGTGTGKTQGYLIPVMEYLHRNP 314 Query: 76 QKTLVVSTANVALQDQIYSKDLPL---LKKIIPDLKFTAAFGRGRYVCPRNLTALASTEP 132 + +++ST +LQDQI+ +++ L++ + G+ Y+C L + + Sbjct: 315 EARIMISTYTKSLQDQIFQQEINRTVALERGYSKISIAVLKGKSNYLCAEKLNSAFEEDL 374 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 LLA+L + D +T R D L +S K Sbjct: 375 KGASLLAWLYFVNLIFLYRQV--------DGETVGEKIGRYLNDGLYLRQLQDEISA-KT 425 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 C + CP VA E + A +V+ NH + E + +N ++DE +H Sbjct: 426 GCAGN----HTLCPAQVALAEARSARLVITNHHKLALIDHDEELSGLFRNC--IVDEANH 479 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 R+A +S R D+ L + R + + ++ + E + Sbjct: 480 FEQAVRNAFSLSVHS-----REITDIIAYLESVLQRVSRKVSGEVEMMLQQCHETINEFH 534 Query: 313 ELIASLNNILNL---YMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 + + ++L Y G+ E G PD +E RL ++LRG+ + + Sbjct: 535 QTVHEFGSMLQTIHPYFAKGEILELPVCHGAYPDGDIEKMLRL--FADLLRGIGKGL-SF 591 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 L + S + L R ++ A+ ++ ++ + V + Sbjct: 592 LKDPDASRVLKILPRSQERVRNAIARLYTEADNFQTMEKTIRTENTVA-----ACQLFFK 646 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG------- 482 H + VS ++ ++ +I TSATLR N F+ + G+ + G Sbjct: 647 HWVITVSAVDVSSLIKAHVYNKRDCVIYTSATLRHRNRFNDFCRIVGMDDATGCDSISPA 706 Query: 483 ---------------DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 RFVA+ SP++ E K+ +P V +N++ + + + Sbjct: 707 GKEDRTFFTDQDGREFRFVAIPSPYSL-ESMKVFLPDGAVNGGYENKQAWLKAVVDLLPE 765 Query: 528 QVESKKHLGMLVLFASGRAMQRFL-----DYVTDLRLMLLVQGDQPRYRLVELHRKRVAN 582 + + LVLF+S ++ + + D +L+ Q +P L++ R + Sbjct: 766 LIRKNRGR-TLVLFSSYSDLEAVALQTGDEIIADGYPLLIQQMGRPTGNLIDEFR----S 820 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 SVL G+++F G+D +GD L+QV I +I FP P+ L F + Sbjct: 821 IRESVLFGVETFWYGVDFRGDTLTQVIITRIPFPYPFDPLQTARKGSLSKEE---FWSRY 877 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 A L Q +GRLIRS G +V D R Sbjct: 878 YYEAIIKLKQGMGRLIRSETDKGRLVFLDSR 908 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 139/687 (20%), Positives = 258/687 (37%), Gaps = 52/687 (7%) Query: 27 PRAPQRQMIADVAK-----TLAGEEGRHLAI-EAPTGVGKTLSYLIPGIAIAREEQKTLV 80 R Q +++ + +L+ + G I EAPTG+GKTL +L+P + + QK ++ Sbjct: 283 YREQQAKLMNAINNHYSGSSLSEKPGESAFIAEAPTGMGKTLGFLLPYAYLTNQNQKKVI 342 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 V+ + LQ Q+ +L I+P +++ + GR +Y+ ++ + L Sbjct: 343 VTEPTITLQTQVTETVNTVLHDILPFEVRAVSLKGRHQYLNLQSFKRSLQIDEGT-TSLQ 401 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 F+ ++ E ++GD D + +LS + + Sbjct: 402 FIKAQILVWLTE------TMRGDFDELHL--------MNAQQKFIAKLSQNANNPAGS-- 445 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 +Y F Q A+ ++ NH+ + A + + LV+DE +LPD + Sbjct: 446 PFYGYEFFERQYVLAQNAQFLIVNHSYL--AEYANELGTSENKPYLVIDEAQNLPDAVLN 503 Query: 260 ALEMSAEITAPWYRLQ--LDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 I R+Q ++L + + + +L E L I Sbjct: 504 QSRHQLPIQTWLARVQTAINLILQDAKPAVGDILRNIFGGNQLKNKLLRALEMLSVEIPQ 563 Query: 318 LNNILNLYMPAGQEA-------EHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L L Q+A E A + ++ + + L + L Sbjct: 564 LQVSLYRRFLLNQKAPATQGTYEIALANNDFAQFWIDQSNHVQSIHTGASDLEDALQELL 623 Query: 371 SEKTGSHDIVRLHRL--ILQMNRALGMFEAQSK-LWRLASLAQSSGAPVTKWATREEREG 427 ++ + + L + R L K L W T + Sbjct: 624 TQFSDTKGAFSLGERQQLADFRRLLDNISQYEKQLTTFQQDLVDFPEASIFWLTETQSHD 683 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 +L + + + ++ V ATL + L + L ++ Sbjct: 684 SSNLQLSGGLLHTLNYFKEKVYPHFMAPTVIGATLFTSTKSGYLYDRLNLDKETAT-VRH 742 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 F+ Q +++ + P+ + ++A+ V + LVLF S + Sbjct: 743 YPDIFDFKNQADLIMVKNAPLPTEKDFSNYLAKQLVDVTTSV----NQNTLVLFNSLDTI 798 Query: 548 QRFLDYVTDLR------LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 Q+ +++ + L LL QG + +KR+ + + V++G SF EG+DL Sbjct: 799 QQVYNHIQSNKKFQQSSLTLLAQGVTGTRGKI---KKRMQSEDGLVVLGAASFWEGIDLP 855 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD L + I ++ F ++ + E + S + PF +LP A L Q +GRLIR+ Sbjct: 856 GDQLRLLIIARLPFDRPNTVLQKAEEAVINSEGKQPFYQSTLPKAVLRLRQGIGRLIRTP 915 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALP 688 +G V+IYD R+LTK+YGK L +P Sbjct: 916 TDYGAVIIYDARILTKSYGKTLRKMMP 942 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 133/709 (18%), Positives = 266/709 (37%), Gaps = 86/709 (12%) Query: 15 YKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE 74 YK + + + + R Q + + L + IEAP G GK+L+YL+ E Sbjct: 240 YKNVTQSL-NLTYRPQQLYLAEIILDQLMHSDK--AMIEAPLGSGKSLAYLLAATMYNIE 296 Query: 75 EQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPT 133 + +++ST LQ Q+ KD+PLL ++ + + + Y+ ++ + + Sbjct: 297 TGRHVMISTNTKLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISLGLISQILKDDTN 356 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW-DGLRDHTDIAIDDDLWRRLSTDKA 192 + ++ L +L E GD+ G + + D I+ + R Sbjct: 357 NYE-VSILKMQLLIWITETN------TGDIQELNLKGGQKMYVDQKIETYVPVR------ 403 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 + + +R Q ++ + NHA ++ + + + ++DE H Sbjct: 404 ---------HDIHYYNYIKRNAQNIQIGITNHAHLIHSDSENTIYQLFDDC--IIDEAHR 452 Query: 253 LPDVARDALEMSAEITAPWYRLQL---DLFTKLVATCMEQFRPKTIPPLAIP-------- 301 LPD A + + + Y+L L + KL+ + + + + L I Sbjct: 453 LPDYALNQVTNDLNYSDVKYQLGLIGKNENEKLLKAVDKLEQQRILEKLDIAPIDVFGLK 512 Query: 302 ---ERLNAHCEELYELIASLNNILNLYMPAGQEAE--HRFAMGELPDEVLEICQRLAKLT 356 L+ E+L+ I ++ ++Y + + F GE+ ++ I +L K Sbjct: 513 ININELHDLNEQLFTTIYNIIQTSDVYDDDIHKYHYVYDFETGEILKDLRAIIDKLNKTI 572 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 E+ G+ + K+ ++ LH + +++ + + + +LAQ S Sbjct: 573 EIFNGMNHKTI-----KSVRKQLLYLHDKFKLIEQSIK--DHHTSFISIKNLAQKS---- 621 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 + V D L + + + S TL +SF Q Sbjct: 622 -------------TIRLLVKDYDVKDILTKQVLEKFKSLTFISGTLTFNHSFKAFQN--W 666 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 E + +P + +P + N + ++A + + + + + Sbjct: 667 FNEDIDFNTFEISTPLTSSNHTNVFVPNDVETYNYKNLDDYVASIVDYIVEYI-TVTQSK 725 Query: 537 MLVLFASGRAMQRFLDYVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 LVLF S + M D + +L ++L Q Y++V+ + N ++S+L+G Sbjct: 726 CLVLFTSYKMMHMVQDLLNELPELEDYVILTQQQNQNYKIVQ----QFNNFDKSILLGTS 781 Query: 593 SFAEGLDLKGDLLSQVHIHKIAF-PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 +F EG D + + L V I K+ F + + + E+ F+ LP A Sbjct: 782 TFFEGFDFQANGLKCVMIAKLPFMNKHNIKYWLMDSEFT-----STFKDYVLPDAVTRFR 836 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 Q +GRLIR G +V +D RL+ Y +L F + + + Sbjct: 837 QGLGRLIRHEDDKGLIVSFDDRLVNSTYKSFFAQSLEHFKQRKGNIKQF 885 >UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FSD6_9FIRM Length = 669 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 151/701 (21%), Positives = 260/701 (37%), Gaps = 90/701 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL--VVSTAN 85 R Q+++ ++ + L +E + EA G GKT +Y++ K + V+ST+ Sbjct: 25 RVKQKELSLEMLRAL--QENKLALCEAEVGTGKTHAYILALTVHNIYSDKKIPAVISTST 82 Query: 86 VALQDQIYSKDLPLLKKIIPD-------LKFTAAFGRGRYVCPRNLTALASTEPT-QQDL 137 +ALQ + + +P + I+ + L F G+ YVC L ++ Q+++ Sbjct: 83 IALQKALTEEYIPQISGILLEHHVIDKPLSFVVRKGKRHYVCDSRLKIYETSLKNLQREV 142 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 A L EL ++E R D D + + R++ + + + Sbjct: 143 DANLILELARLGEQEFDRI----------------DLDDAVLTPYVKGRINVFRCN---K 183 Query: 198 NCYYYRECPFFVARRE--IQEAEVVVANHALVMAAMESEAVL---PDPKNLLLVLDEGHH 252 +C Y C F +++ + + NH ++A + + P +V DE H Sbjct: 184 SCPYSLLCRFMNFKKKCMTDNFDFQITNHNYILADLIGQKQGRKPLFPGYGAMVFDESHK 243 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 L D AR T ++ + I L+ R +EL Sbjct: 244 LIDAARQMYS----------------------TVWDEQDAEFIVGLSEVNRRTTGMDELT 281 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 L + L R A + E + E++ G E Sbjct: 282 VLRSQLAEYNRQIFD-------RLAGDLAGNHTREGSR-----IEIVIGSMEKIYIRHMA 329 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 K + Q R G+ + +L ++ +SG + W + E L Sbjct: 330 KALEQLPLSYQENSGQKMRLQGLKKRCQELTDKLTIFLNSGNSIC-WMEKRENG---RLA 385 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL--DS 490 V + + L R +W +I+TS T+ FS + M+GL A R + S Sbjct: 386 LCAVPMELEQVLFRDIWSRPIPVIITSGTMSVRGDFSHFKRMTGLSFAALSRIMETSKPS 445 Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550 PF+ G + IP P+I + +++I + + V S H L+LF S M+R Sbjct: 446 PFDFQSNGLLYIPERMPFPNIRD-DRYIQAIMEEIVQIV-SATHGHTLILFTSYWLMERV 503 Query: 551 LDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 + + L + G R ++ R+ VL S EG+DL GD+LS + Sbjct: 504 FYGLKEQLSDYPLFLMGRG-RLDVISSFRR----SGNGVLFASDSAGEGIDLAGDILSSL 558 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 + K+ FP D PV+ + + Y +P L Q GR IR Sbjct: 559 IVVKLPFPVPD-PVMEYQRNQYDDFDLYR-RDIIIPEMLIKLRQWFGRGIRREKDTAVFS 616 Query: 669 IYDKRL-LTKNYGKRLLDALPVFPIEQ--PEVPEGIVKKKE 706 I D R L Y +L+ +P P+ +V + I++KK Sbjct: 617 ILDSRASLRGRYRAEILNTMPTMPVTDRLMDVADFIIRKKA 657 >UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NXQ7_9BACE Length = 684 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 132/690 (19%), Positives = 255/690 (36%), Gaps = 87/690 (12%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R Q+ M ++ L ++ H AIEA G+GK+ YL+P + ++ K ++++T Sbjct: 44 GLEMREGQQDMSFEIVDALINDQ--HFAIEAGVGIGKSFGYLVPVLLYSKRMNKPVIIAT 101 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 + +ALQ+Q++ ++ + + A G+ Y+C + + D L + Sbjct: 102 STIALQEQLWRDVHTVMPLLGLNRDVILAKGQTHYLCNKRADEYMCDP--KADPPDALKE 159 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 + +E R + +W +++ + S +NC Sbjct: 160 GIKQGYEE--------------------RKVFPEVLPQGVWDKVNVQRFS--MKNCGSCE 197 Query: 204 -ECPFFVARREIQEAE-VVVANHALVMAAM----ESEAVLPDPKNLLLVLDEGHHLPDVA 257 +C ++ R ++ + VV+ N + + + L + LLV+DE H+L D Sbjct: 198 KKCKYYKVRAALKFTDGVVLCNQDFLTQHLMKLRRGQDGLINAAADLLVVDEAHNLDDKV 257 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER-LNAHCEELYELI- 315 R A R + ++ + + R ++ +R + Y + Sbjct: 258 RSATTE---------RFGQGMLFGMIKSAFYELRSSDQSSVSGEKREAESAIIAFYNCLK 308 Query: 316 ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTG 375 A + +N E + R+A D + L ++ + L+ + Sbjct: 309 AQVQKQINEA-----EQDMRYADRFFFDNNGSAIELLTEMNAAIHNLSSSI------QIY 357 Query: 376 SHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHC 435 S R +R + + E+ S+L + W + G +C Sbjct: 358 SSMDFRNNRSFAASDDLDAVSESLSELLDRID-------DMLIWIE---QHGSNTELVYC 407 Query: 436 VGIRVSDQLERLLWRSIPHIIVTSATLRSLNS------FSRLQEMSGLKEKA-GDRFVAL 488 + + RL + I+TSATL + S +S +G G Sbjct: 408 -PKNTKEIVSRLYFNGDERTILTSATLTNATSGSLEEQYSYFISNTGFPAGDRGCLSEPK 466 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SP+ + E I P+ + + I + + + S + LVLF + M+ Sbjct: 467 PSPYPYDEHAMIYYCDDLPHPTRE-HDAFIEKGVERLLE-ILSISNGKALVLFTAKTDME 524 Query: 549 RFLDYVTD--LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 +++ L +L+Q V SVL+G ++ EG+ ++G LS Sbjct: 525 EVYSILSEKNLPYKILMQQPGSSQDKV---LNEFKEDTNSVLLGTGAYWEGISIEGKSLS 581 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I ++ FP D P++ + S+ + +P L Q +GRLIR+ G Sbjct: 582 NVIIFRLPFPVPD-PIIEYKC----SVAKDALMDVRVPEMIIKLKQGIGRLIRNFTDTGI 636 Query: 667 VVIYDKRLL---TKNYGKRLLDALPVFPIE 693 V I D+RL ++ Y D+LP+ Sbjct: 637 VCIIDRRLRDEPSERYHDITWDSLPIKNRT 666 >UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355EC Length = 765 Score = 367 bits (942), Expect = e-99, Method: Composition-based stats. Identities = 143/704 (20%), Positives = 259/704 (36%), Gaps = 85/704 (12%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR--EEQKTLVV 81 R Q+++ + + L +E + EA G GKT +Y++ + + ++ Sbjct: 118 GMAKRKSQKELALSMLRAL--QENKLALCEAEVGTGKTHAYILAVTIHNLFSQSKTPTMI 175 Query: 82 STANVALQDQIYSKDLPLLKKIIPD-------LKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ST+ +ALQ+ I + +P + +I+ + L F G+ +VC L S+ Q Sbjct: 176 STSTIALQEAITKEYIPQISRILLEHRIIDKPLSFVVRKGKSHFVCDSRLKTYESSIRNQ 235 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 N E+Q A+L + D + + R++ + S Sbjct: 236 -------------NRPEDQGLLAQLGELWREQEH--YLDLDGFPLTPYVKERINVSQCS- 279 Query: 195 LNRNCYYYREC-PFFVARREIQEA-EVVVANHALVMAAM---ESEAVLPDPKNLLLVLDE 249 C + C +RR + E+ + ++NH ++A + P + V DE Sbjct: 280 --EFCPHSSYCRFASFSRRWLSESYDFQISNHNYILADVVNRREGKKKLLPYYNIAVFDE 337 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H L D AR ++ + L + R + E+ + Sbjct: 338 AHKLIDAARQIYC--TRLSENEIPKLIHLISPERFVDKSSQRQMMELCTGLSEKNTRLFQ 395 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 + N + N+ ++ R + + L ML L +F+ Sbjct: 396 KTGGAFIQSNQMENISRTIEEDRSTRLWIRD--------------LIGMLEKLGRIFVTV 441 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 + G + + + L +F + + W + + G Sbjct: 442 KMDSCGR--VKTIRNTAQSIEDRLNVFLSAKQ--------------NISWIEKSDSGG-- 483 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 L F + + L LW + H I+TS T+ +F + M+G+ ++ Sbjct: 484 -LEFCSLPRELERILYHDLWHTGVHSIITSGTISVGGNFDHFKRMTGIDLLQPQNRRVME 542 Query: 490 ----SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 SPFN+ + + IP P I + E++I ++ + L+LF+S Sbjct: 543 VSKLSPFNYSQNAILYIPEELPFPDIHD-EKYIEAISREIIHLIC-ATFGHTLILFSSYW 600 Query: 546 AMQR-FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 M+R F + +++ L + R ++E R+ VL S EG+DL GD+ Sbjct: 601 LMERIFYEVKQEIQSFPLFIMKRGRMDMIEKFRR----SGNGVLFASDSAGEGIDLPGDI 656 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 LS V I K+ FP SP++ E ++Y E+ + P L Q GR IR Sbjct: 657 LSSVIIVKLPFPVP-SPILEYERTKYDDFSQYVKEIIT-PGMIIKLRQWFGRGIRRETDT 714 Query: 665 GEVVIYDKRL-LTKNYGKRLLDALPVFPIE--QPEVPEGIVKKK 705 I D R+ + Y +L ALP P+ E+ I +KK Sbjct: 715 AVFSILDSRVGIHGRYRDDVLKALPDMPVTGRIEEIRRFIAEKK 758 >UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E7F Length = 633 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 140/705 (19%), Positives = 256/705 (36%), Gaps = 121/705 (17%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R Q M ++A+ +A + LA+EA G+GK+++YL+P + E+K ++++T Sbjct: 23 GLQRRPGQIAMSQEIAQAIADN--KSLAVEAEVGIGKSIAYLVPLVIQYFRERKQMIIAT 80 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 + +ALQDQ+ S L +L+ + A G YVC Sbjct: 81 STIALQDQLESDILNVLELLGVRADVEIAKGMKNYVCLERFHRFTREHKD---------- 130 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 D K+ GL+ D+ + D++W ++ + C + Sbjct: 131 ---------------YTRQFDRAKY-GLQLRQDVYVPDEVWDKICINSFGDKCSECSFRH 174 Query: 204 ECPFFVARREIQEAE-VVVANHALVMAAM---ESEAVLPDPKNLLLVLDEGHHLPDVARD 259 +C + + R I+ + +V+ N ++++ ES + P LV+DE Sbjct: 175 KCEYSLMRERIRNKDEIVICNQNMLVSHFIKEESGEGIFKPDFSTLVVDEA--------- 225 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 L + + + S Sbjct: 226 ------------------------------------------HNLENNFRDAFTTAYSQK 243 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR-GLAELFLNDLSEKTGSHD 378 I N + A + ++ L ++EI Q + + L+ + + + + + Sbjct: 244 EISNEVLKATENRKN-----ILSSRIVEIIQMVDDFFKYLKYDIHQQQSKSIDDMRTYYY 298 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQS----SGAPVTKWATREEREGQLHLWFH 434 L + M E + + R + Q W T E+ + + Sbjct: 299 RPIREVRKLVLRIRSAMLEIEMRTNRRLNCLQMFRNLENKDCLVWLTTEKG-----VRVN 353 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS------FSRLQEMSGLKEKAGDRFVAL 488 + ++ RLL+ I+TSAT+ S NS + G Sbjct: 354 ICKKDIRREIGRLLFTESRRTILTSATITSQNSGTLSEKYRYFLNNLGCPNNVCVSEPK- 412 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SP+N+ + + + P+ N + K + + L+LF + MQ Sbjct: 413 KSPYNYDKHSIMYVSDKLPIPNKRNRTAYRNAAIKEIVKLL-NITEGKALILFTAKDDMQ 471 Query: 549 RFLDYVTDLRLM--LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 ++++ L ++VQ + E ++ N SVL+G ++ EG+++KG+ LS Sbjct: 472 YVFKKLSNMGLPYKIMVQDESTTQ---ERRLEKFQNNVNSVLLGTGTYWEGINIKGESLS 528 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 QV I K+ FP D P+V + + P ++P L Q VGRLIRS G Sbjct: 529 QVIIFKLPFPVPD-PIVEYKMRKTE----CPLMDVAVPEMIIKLKQGVGRLIRSSEDKGI 583 Query: 667 VVIYDKRLL---TKNYGKRLLDALPVFPIEQP--EVPEGIVKKKE 706 V I D R+ Y + L +LP + E+ E + KE Sbjct: 584 VSILDPRVSKSQNTAYREDTLASLPEKNTTEDITELEEFWNRIKE 628 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 365 bits (938), Expect = 3e-99, Method: Composition-based stats. Identities = 123/711 (17%), Positives = 265/711 (37%), Gaps = 85/711 (11%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R Q + + L E IEA G GK+L+YL+ + E K +++ST Sbjct: 248 GLTYRPQQLYLAETILDQLMHSEK--AMIEASLGSGKSLAYLLAALMYNIETGKHVMIST 305 Query: 84 ANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ KD+P + + + + + Y+ ++ + + + ++ Sbjct: 306 NTKLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNILKM 365 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKW-DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 L GD+ G + + D I+ + R Sbjct: 366 QLLI-------WITETPSGDIQELNLKGGQKMYFDQKIETYVPAR--------------- 403 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 + + +R Q ++ + NHA ++ + ++ + ++DE H LPD A + + Sbjct: 404 HDVHYYNFIKRNAQNIQIGITNHAHLIHSDVENSIYQLFDDC--IVDEAHRLPDYALNQV 461 Query: 262 EMSAEITAPWYRLQL---DLFTKLVATCMEQFRPKTIPPLAIP-----------ERLNAH 307 Y+L L + KL+ + + + + L I ++ Sbjct: 462 TNELSYADIKYQLGLIGKNENEKLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHEL 521 Query: 308 CEELYELIASLNNILNLYMPAGQEAEH--RFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 E+L+ I ++ N ++Y + F ++ ++ I +L K E+ G++ Sbjct: 522 NEQLFSTIFTIINDSDVYDDDIHRFHNVFTFETKDILKDLHAIIDKLNKTLEIFNGISHK 581 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 + L ++ + ++ QS A T + + + Sbjct: 582 TVKSLRKQLLYLKD------------------------KFKNIEQSLKAGHTSFISIKNL 617 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 + + + V D L + + +I S TL+ +SF +++ + Sbjct: 618 SQKSTIRLYVKDYAVKDVLTKQVLEKFKSLIFISGTLKFNHSFDAFKQL--FNKDVHFNT 675 Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 +++ + + IP N ++++A + ++ + + LVLF S + Sbjct: 676 FEVNTSLQSAKNTSVFIPSDVASYQYKNIDEYVASIVSYIIEYT-TITSSKCLVLFTSYK 734 Query: 546 AMQRFLDYVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 M D + +L ++L Q Y++V+ + N ++++L+G +F EG D + Sbjct: 735 MMHMVQDMLNELPEFEDYVVLTQQQNQNYKIVQ----QFNNFDKAILLGTSTFFEGFDFQ 790 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 + + V I K+ F + + S F+ LP A Q +GRLIR+ Sbjct: 791 ANGIKCVMIAKLPFMN----KHNAKYWLMDSEFTSTFKEYVLPDAVTRFRQGLGRLIRNE 846 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG--IVKKKEKTKS 710 G +V +D RL+ NY L + ++ ++ + ++++ +K K Sbjct: 847 NDRGIIVSFDDRLINSNYKNIFEQTLENYRQKKGDIQQFGKLLRQIQKKKK 897 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 365 bits (936), Expect = 4e-99, Method: Composition-based stats. Identities = 124/674 (18%), Positives = 244/674 (36%), Gaps = 40/674 (5%) Query: 28 RAPQRQMIADVAKTLAGEEG--RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTAN 85 R Q ++ + + EG +H+ IEAPTG GKTL YL P IARE+Q+ +VVS Sbjct: 258 RKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVSVPT 317 Query: 86 VALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 LQ+Q+ + L I+ ++F G Y+ NL A + Sbjct: 318 TILQNQVLAVGRQQLNAILETPMQFAILKGSSNYL---NLEAFMK---------SITHQT 365 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 L+ +++ + DT +D + H + + + + + LN ++ Sbjct: 366 LSKDSRLVAMKILVWLTKTDTGDFDEINHHINFS---NFVDGIRHHGKTVLNPKSKFFEY 422 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMS 264 + A ++++ A+ ++ NH + A+ ++ + + LLV+DE H P + + + Sbjct: 423 DFYRRAMKKLKYADFIITNHRYL--ALHADEIGESDQQPLLVIDEAQHFPTIVSNMNQKF 480 Query: 265 AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNL 324 ++ L ++LV T + L + + I Sbjct: 481 LDLN-ELMMETHRLVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQK 539 Query: 325 YMPAGQEAEHRFAMGELPDEVL---EICQRLAK--LTEMLRGLAELFLNDLSEKTGSHDI 379 + P E++ + ++AK ++++ LA F+ + D Sbjct: 540 LFDKFVAPRKKNLYENQPAEIVIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQ 599 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + + +K + W T + + Sbjct: 600 ELTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWITLGPNHDPGSIRIGKEILD 659 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD-RFVALDSPFNHCEQG 498 + + + +++ TL + S + GL + R + Q Sbjct: 660 TGEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRG--VDFENQL 717 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR 558 + + ++ + A+ A + + + LVLF S ++ + + D Sbjct: 718 DFEVLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSD 777 Query: 559 LM----LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIA 614 L ++ QG + + + E ++L G SF EG+D GD L + + ++ Sbjct: 778 LNESRRIIAQGIHGSKAKI---IREFNDEENAILFGAASFWEGVDFPGDRLEYLIVTRLP 834 Query: 615 FPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 F + ++ + R F LP A Q +GRLIR+ G V+ D R+ Sbjct: 835 FRSPED----RMVQFARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDTGVAVMLDNRI 890 Query: 675 LTKNYGKRLLDALP 688 + K+YGK + LP Sbjct: 891 INKDYGKLFIKQLP 904 >UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=A6BD56_9FIRM Length = 658 Score = 364 bits (934), Expect = 8e-99, Method: Composition-based stats. Identities = 147/732 (20%), Positives = 261/732 (35%), Gaps = 114/732 (15%) Query: 9 AQIAAWYKALQEQIP--DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 ++ ++ L +P R Q ++ ++ L E +A G+GKT +YL Sbjct: 13 GEVEQIFREL---LPEAGLHVREEQIRLCHEMLDALMKNEIT--LCDAGVGIGKTYAYLT 67 Query: 67 PGIAIAREE----------QKTLVVSTANVALQDQIYSKDLPLLKKII-------PDLKF 109 I + + ++++VVST+++ALQ I + +P L ++ +LK Sbjct: 68 ACILMRKYSVLHSGYSGCDRRSVVVSTSSIALQKAIIEEYVPFLSDVLLKADLLQGELKA 127 Query: 110 TAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWD 169 G+ +VC L + A ++ + + + L G Sbjct: 128 VVRKGKEHFVCDYRLAQRLEAVRDKNKNQAQMEALKSLRHNFDLDSVHNLSG-------- 179 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEV--VVANHALV 227 RRL C R C C + ++ ++ + NH + Sbjct: 180 -------------FDRRLVCVPKFCP-RECPGKAGCRYQKHLDISRKEDIFLQICNHNYL 225 Query: 228 MAAM---ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 +A + LV+DE H LP+ A S + Sbjct: 226 LADAMHRANGYRPLLADYRALVVDEAHKLPEAASQMYGRSIGREDVQEIAYFLVREHKGT 285 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 + + I + E++ + Y P G Sbjct: 286 DGKRLLEGVSALQMEIRKHRKDGIEDMA-------GKESFYFPPG--------------- 323 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 LA++ E L+ + + ++ R + +M G F K Sbjct: 324 ---AGTALAQMQERLQLMIKRLAGNI--------PYWTFRRLEEMEELFGWFLKNDK--- 369 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 ++ +++ + HL F V + L+ LW I+TS TL++ Sbjct: 370 -------------RYILFLQQDSRGHLTFMAVNREIPKYLDTTLWSQGFPAILTSGTLKA 416 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 N F+R ++M+GL+++ G R +SPF + E + IP +P + ++A Sbjct: 417 GNGFARTRQMTGLEKETGVRECVAESPFCYQENCLLYIPEHL-KPRKKGSREEAEQLAGQ 475 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGE 584 R V S + LVLF S M + D +VQ +R + R E Sbjct: 476 IRDLVCS-TYGHTLVLFTSYTLMGNVQQLLRDQIPFPMVQ----VWRNSQEEIARFKKME 530 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 +VL S EG+D GD++S + I K+ F D P+ + E +SL + + +P Sbjct: 531 NAVLFAAGSCWEGVDFPGDMVSSLIIVKLPFSVPD-PIHEAQREQYRSL-KSYIQTIVVP 588 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK-NYGKRLLDALPVFPIEQPEVPEGIVK 703 L Q GR IR+ V I D R K Y +L+ALP + ++ E I + Sbjct: 589 DMQKKLRQGFGRAIRTEQDTCVVSILDHRATKKGRYRSDVLEALP-----KCQMAERIEE 643 Query: 704 KKEKTKSPRRRR 715 ++ +S + R Sbjct: 644 VEDFIRSRKVER 655 >UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGW8_9BACT Length = 591 Score = 363 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 139/685 (20%), Positives = 244/685 (35%), Gaps = 132/685 (19%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 +L + +P + R Q + ++ + + +EAPTG GKT +YLIP E Sbjct: 9 GSLSDILPRYRQRDAQLDAANFIFDSM--KTYQPAVVEAPTGSGKTFAYLIPAF----EL 62 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFT-AAFGRGRYVCPRNLTALASTEPTQ 134 + ++ST L QI KD+ + +I D +F GR Y C Sbjct: 63 GRRTIISTKTKQLMSQIAGKDIEAVNRIFGDDRFVAVLKGRRNYFCHLRFFRF------- 115 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI---DDDLWRRLSTDK 191 NQ +R + G + ++ D+ I +STD Sbjct: 116 -----------VYPNQGRFERVVEWYGSVV------DQEIIDVPIGVFSPHEIEHISTDS 158 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM----ESEAVLPDPKNLLLVL 247 C C +Y C F+ A+ + A++V+ NH L+M+ E+E +++ Sbjct: 159 WQCTASKCEFYDICSFYRAKEQANSADIVITNHYLLMSDFALKSENEHASIFDFADHIIM 218 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H +PD+ + + F KL+ + F P+ I A Sbjct: 219 DEAHSIPDIFPRFAGTELSLRS---------FLKLMNENRQAFDPREIELAA-------- 261 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 +L+ + + + L E Sbjct: 262 ------------GMLSGLLETIKTRTYTN-----------------DFRGALLPYIEFVN 292 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 + EK RL+ + LG E ++ +E Sbjct: 293 KAIGEKDFEEMKNVHKRLVEKAVSVLGDSEG------------------VRFVEQE---- 330 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 + + + + +D+L + + + SATL +FS +G +E+ + ++ Sbjct: 331 RGDILLQYIPLNAADKLREGMKNACLSPVFVSATLSGKGNFSYFLSETGYEEEEIGK-MS 389 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 L+ F+ +QG++++ D +E E+A K +L++ S M Sbjct: 390 LEPVFDMAQQGRLLV--------QDCDEAFYEELAL--------KAKGSVLIICNSVGRM 433 Query: 548 QRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + + +L + Q D + K + ++ VG F EG+D +S Sbjct: 434 LKLTKMLKELCPGRVYSQRD--------IDIKDTEGLKDTIFVGCAVFREGMDFAHTGIS 485 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V + K+ F D V+ + E ++ + PF LP A Q VGRL+R G Sbjct: 486 YVVLDKLPFEYPDDLVLKEQAESVRKKGQEPFMDYFLPRAVIYYRQAVGRLLRHEDDKGV 545 Query: 667 VVIYDKRLLTKNYGKRLLDALPVFP 691 V+ D+R+ TKNYGK L P Sbjct: 546 WVVLDRRIDTKNYGKYFATVLKDVP 570 >UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73F47_BACC1 Length = 915 Score = 357 bits (917), Expect = 6e-97, Method: Composition-based stats. Identities = 175/730 (23%), Positives = 286/730 (39%), Gaps = 106/730 (14%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M A + I + L + I RA Q QM D+ + L R + IEAP G GK Sbjct: 1 MNSKADVILDIFE--EKLIKHYGTSIIRASQLQMALDIGEFLESS-KRVMIIEAPVGTGK 57 Query: 61 TLSYLIPGIAIAREE---QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR 117 +L L+P + + ++ ++ +TA + LQ Q+ ++PLL+K+ A G+ Sbjct: 58 SLGALVPVLVDRKYNTFDKRNVMYATATINLQGQLMRSEIPLLRKLGLVNNPIVAKGKSH 117 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y C + S++ + +L + D + E+ R +K T + L + Sbjct: 118 YYCHFRMKN--SSQKIENELFSRTDQHVL----EKFFRLSK------TGQRSELEEEHGF 165 Query: 178 AIDDDLWRRLS-TDKASCLNRNCYYYRECPFFVARRE--IQEAEVVVANHALVMAAMESE 234 I+D W+R+ ++K++C R C + CP + RR E +VV+ NH ++ + + Sbjct: 166 NIEDKKWKRVELSNKSNC--RACQFSMVCPTIIHRRRFKAIENDVVITNHDQLINSFLNA 223 Query: 235 AVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKT 294 + +L D G + D A D LE + + F Sbjct: 224 MDMDSIYEPVLKTDMGLVIIDEAHDFLET------------------FIGRLEKTF---- 261 Query: 295 IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE--LPDEVLEICQRL 352 L+ L + E + L ++ +E + G L D V I Sbjct: 262 --TLSYLRNLEKYIERDNYKWKKAVDRLGAWVKRNKEYNKKSDAGRYLLTDFVFSI---- 315 Query: 353 AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 L+ L ++ +L + R ++ +++ L F + K Sbjct: 316 ------LKTLQKILNENLFQAK-----YRRAEILDELSGILHRFLQKEK----------- 353 Query: 413 GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLL--WRSIPHIIVTSATLRSLNSFSR 470 T W + E+ E FH + + ++L ++ II S TL FS Sbjct: 354 ---YTSWISLEDNE------FHVIENNYKEVFRQMLDYIKNSNKIIFMSGTLTVNKDFSY 404 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 ++ +K L+SPF++ Q I IP+ P N+++ I RK + Sbjct: 405 IKNQWNIKSGEAV-TKVLNSPFDYKNQALIYIPKKLGNP---NKDEFIENALKEIRKLLR 460 Query: 531 SKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERS 586 L+L S M F + + + L QG+ VE KR E S Sbjct: 461 -LTGGRTLLLNTSKDHMDEFYNGIKVELATSNVPLYKQGESG----VENLTKRFKELEES 515 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 VLVG SF G + G L+ V I+K+ FP + P++ +K +R F+ S P Sbjct: 516 VLVGSGSFFSGFSIAGTSLTSVIINKLPFPAFNDPIIELMSMGIKKEDR--FKKVSYPMM 573 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK-NYGKRLLDALP----VFPIEQPEVPEGI 701 L Q VGRLIRS +G V I D+R+ T YGK + + L V EV Sbjct: 574 INKLDQAVGRLIRSIEDYGIVTILDERIYTSQGYGKDVRELLKEQGYVLTRSWEEVESFY 633 Query: 702 VKKKEKTKSP 711 +KK EK Sbjct: 634 IKKLEKGAEA 643 >UniRef50_UPI0001BC908D ATP-dependent DNA helicase DinG n=1 Tax=Pseudomonas syringae pv. tabaci ATCC 11528 RepID=UPI0001BC908D Length = 508 Score = 354 bits (907), Expect = 9e-96, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 221/503 (43%), Gaps = 27/503 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTL----AGEEGRH------LAI 52 ++ LK QI Y E PR QR MIA+VAK L EEGR +A+ Sbjct: 2 ISTELKTQIQGAYSRFLEA-KSLKPRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAV 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKT++Y I I A+ K LV++TA VALQ+QI KDLP L++ + F Sbjct: 61 EAGTGTGKTVAYAIASIPTAKAAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFTFAL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEE--QKRCAKLKGDLDTYKWD 169 A GRGRY+C L AL ++E +E QK + L KWD Sbjct: 121 AKGRGRYMCLSKLDALLQESDATNATAQLFEEEGFKIEVDEASQKLFTSMLQKLAGNKWD 180 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 G RD + D W RL+TD + C NR+C +++C F+ AR + + +V+V NH +V+A Sbjct: 181 GDRDSWPQELADQDWARLTTDHSQCTNRHCPNFQQCAFYKAREGMGKVDVIVTNHDMVLA 240 Query: 230 AME--SEAVLPDPKNLLLVLDEGHHLPDVARDALE--MSAEITAPWYRLQLDLFTKLVAT 285 + AVLPDP++ L V DEGHHLPD A + TA W KL+A Sbjct: 241 DLALGGGAVLPDPRDTLYVFDEGHHLPDKAIGHFAHYTRLKSTADWLEQTAKNLAKLLAQ 300 Query: 286 --CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNIL-NLYMPAGQEAEHRFAMGELP 342 + + H + ++ L + M + HRF G +P Sbjct: 301 HPLPGDLGKLIEQVPELAREIKGHQQFMFGACEQLADFRAGEDMQGRERPRHRFVGGVIP 360 Query: 343 DEV----LEICQRLAKLTEMLRGLAELFLNDLS-EKTGSHDIVRLHRLILQMNRALGMFE 397 + + +E+ + A+L ++ L EL + E + L Sbjct: 361 EHIREMGIELKKGFARLDDLFTRLTELLKEGMDGEVNIGIASHQAEEWYPLFGSLLARAH 420 Query: 398 AQSKLW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 +LW + P+ +W T + + + I ++ L R LW + Sbjct: 421 GNWELWTAFTAEDPEDSPPMARWLTLADSGAMFDIEVNASPILAAEMLRRNLWNIAYGAL 480 Query: 457 VTSATLRSLNSFSRLQEMSGLKE 479 VTSATL +L F R + +GL + Sbjct: 481 VTSATLTALGKFDRYRMRAGLPK 503 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 132/693 (19%), Positives = 247/693 (35%), Gaps = 58/693 (8%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 + R Q +I + + + L +EAP G GKT SYL+ A + LVV+ Sbjct: 257 KNLRFRRGQVSLINRLHDFVYSDSDNSLVVEAPNGSGKTFSYLM-AYAYELYSGRKLVVA 315 Query: 83 TANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 T LQ+QI +++P L ++ DL Y+ L + + Sbjct: 316 TPTKVLQEQILKQEIPQLLRVTRLDLDAQIVKSSSHYL------DLDGFYNSLYQTDNPI 369 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 L GDLD + + AI+ R+ T + Sbjct: 370 QQTLILQMGILIWLTETETGDLDELQLTNYQAPLFAAIEHPGDARIGTS----------F 419 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 + +AR ++A++++ NHA + +P LV+DE H + + Sbjct: 420 AEYDFWNLARSRQEQADILITNHAYLANHYMDSIWGQNP---FLVVDESHRFVENVASSR 476 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA---IPERLNAHCEELYELIASL 318 S + + W L+ + + + L I ++L +L I + Sbjct: 477 NDSLQFESFW--GMCSHLRNLLFYAEDSAKARFGNNLEFKLILDKLEKDTNDLIHSINKI 534 Query: 319 NNILNLYMPAGQEAEHR----FAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEK- 373 E + +G ++ + L +++ E+ + ++ Sbjct: 535 QQAFYDNRKFATSWEEKRQNAITLGFQGQDLFNNIKHFKHLLNLMQDNIEIVRQETNQLL 594 Query: 374 -----TGSHDIVRLHRLILQMNRALGMFEAQSK-----LWRLASLAQSSGAPVTKWATRE 423 + + LI + + + S+ L +L+ + Sbjct: 595 FLLYHQQKNLLTNDDVLIRDLQEEIDQLDYYSEQNYLLLDQLSDPKKLDHEGFV--LEIS 652 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 + L + + +++++ L+ + SATL + FS + L K Sbjct: 653 NEDDPLSTNLTWLTLDPEEEVKQ-LYHYFDKKLFISATLAEQDDFSYTIKNLYLDPKKTL 711 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + A S F + K+ P N ++ ++ + K + +LVLF + Sbjct: 712 TYRAKPS-FKVEKHLKVYALSDNNAPEDPNSPEYETFISNLLTQI---KDYRHVLVLFTN 767 Query: 544 GRAMQRFLDYVTDL-----RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 ++ +++ +L QG + KR E+++L+G SF EG+ Sbjct: 768 LDVIRDVFSRLSENSNALKDYEILAQGLTGSNEKIA---KRFGIAEKAILLGANSFWEGI 824 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR--YPFEVQSLPSASFNLIQQVGR 656 D K + + + ++ F D P V E LK FEV +LP A Q GR Sbjct: 825 DFKHNGVDLAIVTRLPFESPDQPEVKLRTECLKKQVGADKIFEVDTLPRAILRFRQGCGR 884 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 LIR+ G V+ D+R+ K+YG++ L LPV Sbjct: 885 LIRNERDHGVFVVLDQRVWNKSYGEQFLSGLPV 917 >UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=Bacillales RepID=YPVA_BACSU Length = 641 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 145/663 (21%), Positives = 260/663 (39%), Gaps = 94/663 (14%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 F R Q M + + +E + + EA G GKTL YL+ I+ AR K +++ Sbjct: 35 KGFDLRDEQVFMAFQLERAF--KEKKVMFAEAGVGTGKTLVYLLFAISYARYVGKPAIIA 92 Query: 83 TANVALQDQIYSK--DLPLLKKIIPDLKFTAAFGRGR--YVCPRNLTALASTEPTQQDLL 138 A+ L +Q+ K D+ L + + DLK + Y+C + L + L Sbjct: 93 CADETLIEQLVKKEGDISKLAEHL-DLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLD 151 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK-ASCLNR 197 + E P+ E + + D ++ L + W +S D CL Sbjct: 152 LY---ESLPSFVHESQAMQRFYPYGDRKQYANLSNEE--------WSDVSYDSFQDCL-- 198 Query: 198 NCYYYRECPFFVARREIQEA-EVVVANHALVMAAM------ESEAVLP-DPKNLLLVLDE 249 C C ++R +++ ++++ +H M + + E LP P + +V DE Sbjct: 199 TCDMRHRCGLTLSRDYYRKSTDLIICSHDFYMEHVWTEESRKREGQLPLLPDHSAVVFDE 258 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 GH L A+ AL + + +L+ + + + I + + Sbjct: 259 GHLLEFAAQKALTYRVKQSTLEL-----FLERLLQNDIREEFAELIEDALLAN------D 307 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 E + +++ + + + +HR + E+C+ L K+ E L +E++ D Sbjct: 308 EFFYVLSEESKEVAGSHRLEIKNDHR-----VKKAADELCRLLDKIGEALVFESEMYTID 362 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 +++ + + QM +L +++ + W ++E E Sbjct: 363 ------QYELSVVEEYVEQMAYSLSLYQKDA----------------ISWLEKKEAES-- 398 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 F + V++ L ++ I +SATL SF + + G+ + + +D Sbjct: 399 --TFVVMPRTVAEVLGEKVFSKKIPYIFSSATLSEGGSFDYIADSLGIHDYLS---LTVD 453 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 SP+++ EQ I + + EQ AE ++ LVLF S + Sbjct: 454 SPYDYDEQMSI----NLYAKTDMDAEQKTAETIETIKRY-----KGRTLVLFPSFEELNE 504 Query: 550 FLDY--VTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 F + +L + +GD+ LVE + E +VL + EGLD+ GD L Sbjct: 505 FKELSAAWELPYPIFFEGDEEISSLVE----KFQEEEETVLCSVH-LWEGLDIPGDALKN 559 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 V I + FPP D PV + K + PFE LP + Q +GRLIRS+ G + Sbjct: 560 VTIWSLPFPPHD-PVFTAKRNGAK---KDPFEEVDLPYMLLRVRQGIGRLIRSNQDSGSI 615 Query: 668 VIY 670 IY Sbjct: 616 HIY 618 >UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_ALKMQ Length = 657 Score = 341 bits (874), Expect = 6e-92, Method: Composition-based stats. Identities = 143/692 (20%), Positives = 263/692 (38%), Gaps = 90/692 (13%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 +Y L E + R Q +A + + + EA G GKT +YL+ IA Sbjct: 27 EVFYDILPEH--GYEVREEQIFTAFQLADAVCNK--KVHLAEAGLGTGKTFAYLLTAIAY 82 Query: 72 AREEQKTLVVSTANVALQDQIY--SKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 AR K +V++ A+ ALQ+Q+ D+ L I+ ++ A +Y+C + Sbjct: 83 ARFSGKPVVIACASTALQEQLAGPKGDIQTLSDILGLEIDARMAKDPRQYICDARVDESR 142 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 F + +N+ Q +G+ + D +W+++ Sbjct: 143 GL---------FTEKSNAMSNEINQWLAKTNRGERSEMPL----------VPDRVWKQIG 183 Query: 189 TDKA-SCLNRNCYYYRECPFFVARREIQEA-EVVVANHALVMAAMESEAVLPD------- 239 D++ SC C C AR + A ++++A+H + + + D Sbjct: 184 WDESMSC--DMCSSRGFCKLVKAREHYRPARDLIIADHEVFFDDLWTRDEQIDGGKSPIL 241 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P ++ DEGH + L + + +D + +E+ + ++ Sbjct: 242 PSYSAVIFDEGHKV------MLPAAMRAGKQIIKEDIDN----IILSLEEIQGARDSLIS 291 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 I L + + LN + P+ + A +L + L +L + Sbjct: 292 IAVDLEQTSSDFF---IKLNRCVIADEPSDRLALR--VDDKLFKAADTFYKDLDRLLFEI 346 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + EL+ L ++ R ++ ++R ++ V W Sbjct: 347 QVEQELYTESLPASLLHTYETQIERSMMALDR----------------FCRNKSRDVITW 390 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 Q+ F V +S L+ L++ ++ TSATL + FS GLK+ Sbjct: 391 V------DQMDGSFWVVPRELSKMLDIHLFQKGLPVVFTSATLSNEGDFSYFTRTLGLKK 444 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + ++SPF+ EQ + +PS ++ E + + G LV Sbjct: 445 TSCS---TVESPFDIEEQVVV----HLPQPSSNSHEDIGFSLGIEGLVSLLKLNGGGALV 497 Query: 540 LFASGRAMQRFLDYVTD--LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 L +S +++ D L +L + R LV R+ V SVL+G SF EG Sbjct: 498 LTSSLDEVRKIRKGFKDYQLPFEVLWEDKGERGYLVRKFREEV----SSVLIGT-SFWEG 552 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +D+ G+ LS V + ++ FP +D P++ + E K P P L Q GRL Sbjct: 553 IDIPGEALSLVVVWQLPFPSLD-PLIEVQREEAKKEGLDPKVTVDYPEMGLKLKQGCGRL 611 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 IR+ G +VI + ++ + + + ++ ALP Sbjct: 612 IRTKDDRGAIVIMES-IIGEPWEEVVMGALPP 642 >UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUD5_9CLOT Length = 678 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 147/727 (20%), Positives = 258/727 (35%), Gaps = 118/727 (16%) Query: 9 AQIAAWYKALQEQIP--DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 ++ ++ L P R Q ++ ++ TL GE+ +A G+GKT +YL+ Sbjct: 34 QEVEKIFRVL---FPEQGLAVREEQIRLCHEMLDTLLGEQ--IALCDAGVGIGKTYAYLV 88 Query: 67 PGIAIARE----------EQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-------LKF 109 + + + EQ+ +VVST+++ALQ I ++ +P L +++ + L+ Sbjct: 89 ACVLLRKYSMLTGRGNPLEQRPVVVSTSSIALQKAILTEYIPFLSRVLLEQGIIQSPLRA 148 Query: 110 TAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWD 169 G+ +VC L +Q L+ + L G Sbjct: 149 VVRKGKEHFVCDNRLEQRIEAIRHKQKNAVQKAALLSLRKHYDMDSVKNLSG-------- 200 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE--VVVANHALV 227 RRL C R C + C + E ++ + + + NH + Sbjct: 201 -------------FDRRLVCVPKFCP-RECPGRQMCRYQRYLEESRKQDVFIQICNHNYL 246 Query: 228 MAAMESEAVLPDP---KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 +A A P L++DE H LP+ AR Sbjct: 247 LADAYHRAEGYKPLLSDYRTLIVDEAHKLPEAARQMFG---------------------- 284 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 + I +A EE L +++ L++ AEHR G + + Sbjct: 285 ---KNLCMDDIREIAYYLEREHQKEEAKILRTVMHDALHVVG-----AEHRIGKG-IRET 335 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 + L E + L L EK + + + L Sbjct: 336 FRNTTNSVVSLWEGVE-----MLEFLLEKLERSVPKWIWNRLEEAKDVL----------- 379 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP--HIIVTSATL 462 SS ++ + + + + L ++LW I+TS TL Sbjct: 380 --ECFCSSDEKYVRYLHLDTEQLPV---LCAASREIPGLLRKMLWNWEEGMSAILTSGTL 434 Query: 463 RSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMA 522 ++ F R ++++GL+ +AG + +SPF++ + + +P+ + + +A Sbjct: 435 KAGTGFLRTRQITGLEGRAGVQEYVAESPFSYEKNCLLYLPKTL-DHCRRGSREEAVMVA 493 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVA 581 + S + LVLF S M + D L ++ + ++ R Sbjct: 494 NHIHSLICS-TYGHTLVLFTSYTLMGSVYQILRDSLPFPMVEVWRHSQEEIL-----RFK 547 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 E VL S EG+D GD++S + I K+ F D P+ E E SL Y + Sbjct: 548 TMENGVLFAAGSCWEGVDFPGDMVSSLIIVKLPFAVPD-PISEAEKETYDSLETY-IQSI 605 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN-YGKRLLDALPVFPI--EQPEVP 698 +P L Q+ GR IR+ V I D R + Y + + ALP I E EV Sbjct: 606 IVPDMQKKLRQEFGRAIRTETDTCVVSILDIRAVKGGKYHEDAMCALPSCRIAEELKEVQ 665 Query: 699 EGIVKKK 705 + I +K Sbjct: 666 DFIRSRK 672 >UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPR9_9CLOT Length = 998 Score = 337 bits (864), Expect = 9e-91, Method: Composition-based stats. Identities = 126/666 (18%), Positives = 263/666 (39%), Gaps = 54/666 (8%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 + R QR + + L E+G+ +EAPTG+GK+++YL+P +Q+ +++ST Sbjct: 237 YTLRPQQRDASKFIREGL--EKGKITIMEAPTGLGKSMAYLLPAAIYTHLKQQKVIISTN 294 Query: 85 NVALQDQIYSKDLPLLKKII---PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 LQ+Q+ KD+P L + + D+ +T G+ Y+C + + Sbjct: 295 TKGLQNQLVDKDIPNLLEALNLKRDVSYTLIKGKSNYLCFDRFGDIE-----------YP 343 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWD-GLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 D T KR KG + + + + ++ L + + D C C Sbjct: 344 VDMKTLVGYVYLKRLMMEKGIGEIEEISPAIMEKFNLGF---LINQCNCDSELCDVGACR 400 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 Y C + ++EA+++V NH+L++ V + +V+DE H+L A DA Sbjct: 401 YKDRCYYAAKVEALKEAQLIVVNHSLLLKWPYKSIVPLEN----IVVDEAHNLTQEAYDA 456 Query: 261 LEMSAEITAPWYRLQLDLFT-----KLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 E + ++ + + +++ + + + T+P + + ++ + Sbjct: 457 FENAL-VSYEFEKYLKEIYNSPEKSGYLYYLSRRAKKDTLPLSEVESCIEQCIRQMANIK 515 Query: 316 ASLNNILNLYMPAGQ-EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 AS N + + + + I + L L E L L +S Sbjct: 516 ASFENYITQSGISKDYNIKDHLNINNAKMSF--IIRYLEYLKEDLSSLNISLEKAVSVLK 573 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFH 434 ++ + RL + M + G+ S L ++ S + + + Sbjct: 574 DISNLQKDKRLKILMEKVEGI---NSYSRLLEAVINQSEEGYCFYFEVD--KFFKWWKIS 628 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP--- 491 + + VS + S+ + SATL + + ++ L+ G+ ++ P Sbjct: 629 SIPLDVSGAFYEKVLSSVKSCLFISATLSTDSGYNSLRNTLGINIAKSQNKEIVEVPPIK 688 Query: 492 --FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 F++ + I ++ EM F K + + + +++LF S + + Sbjct: 689 PVFDYKGKSVIYA---MENIDPNDIGAFSEEMKKFVIKLLHNVEG-NIIILFTSRKRLDA 744 Query: 550 FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 F + T+ L G + Y ++ + + + ER +L+G + + EG+D+ GD ++ V Sbjct: 745 FKEEATESLRTL---GIKVVYGKKDIEKLK-SRDERYILLGSKGYFEGIDIPGDAMTTVI 800 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS---LPSASFNLIQQVGRLIRSHGCWGE 666 + K+ P + E + ++ + P S +L Q GR+IR+ +G+ Sbjct: 801 LDKVPNINSKEPFYKSLIENQVERGKNYWQAYAKVNFPIVSIDLKQIYGRIIRTEYDYGD 860 Query: 667 VVIYDK 672 + I K Sbjct: 861 LFIMSK 866 >UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Clostridium RepID=A6LV05_CLOB8 Length = 976 Score = 334 bits (856), Expect = 9e-90, Method: Composition-based stats. Identities = 136/674 (20%), Positives = 257/674 (38%), Gaps = 75/674 (11%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY-LIPGIAIAREEQKT---- 78 + R Q++ + + E+G + IEAPTG GKT +Y +I I +QK Sbjct: 258 GYQYRKDQKEFAKKIRENF--EKGERIFIEAPTGSGKTFAYVIIAAIETYLNKQKNRKDD 315 Query: 79 --LVVSTANVALQDQIYSKDLP-LLKKIIPD--LKFTAAFGRGRYVCPRNLTALASTEPT 133 ++ST LQ+Q+ +D+P +LKK+ D L + A G+G Y+C + + Sbjct: 316 ASFIISTNTKELQNQLIERDIPTILKKLRLDDKLNYGAMKGKGNYLCIERINRCEEFQMD 375 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 ++ LA L + GD++ + ++ H ++ D R ++ D Sbjct: 376 EKGNLALLFLRRLCESGN--------YGDIENINY-LVQKHLEL---DKYIREVNCDSEQ 423 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 C C R C E+ E + V NH+L+ +E K +++DEGH+L Sbjct: 424 CKLDKC--TRACFLRKRYNELPEENITVINHSLLACWPYTEK----KKINHIIIDEGHNL 477 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR--------PKTIPPLAIPERLN 305 + D + E ++ + LDL K + + +TI I N Sbjct: 478 MEKCYDFF--AEEFSSAEFIQLLDLIEKGHPSIIAMLLTLNASFGYRETIEKDKIVYLAN 535 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 + L+ ++ + E +L I ++ L E + L ++ Sbjct: 536 DIIVNINILLNDFRSLRLISGEYNFTTEFFIPREDLQGITNAIGSEISVLKESIYPLYKM 595 Query: 366 FLNDL------SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + + E G D L I ++ A + + + + + Sbjct: 596 LNDYIYNITLDDEIDGDIDHKNLSDYIAKLKSAFDVLDKFLESSVFYAKILEVDSEY--- 652 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 V + V + + + + + SATLR NSF+++++ G Sbjct: 653 ---------KSFILKNVPLNVGEMVNEHMLKDVKSTTFLSATLRIENSFNKIKKHLG--- 700 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + + + F+ ++ KI + +E +I ++ F K + +LV Sbjct: 701 QEKAKEFIIPPTFDLKKRTKIFALKDV---GRYDEPSYIKNVSKFIYNTAL-KINGHILV 756 Query: 540 LFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVL-VGLQSFAEGL 598 LF + + + LL +G + + + + + + R V+ +G + F EG+ Sbjct: 757 LFNNNARRTAVSEEL-----ELLTRGTKIEVHMSKKSVRALNDKNRQVIILGSKGFFEGI 811 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D+ GD LS V + KI + P++ + K ++ + P Q GRLI Sbjct: 812 DVPGDALSCVMLDKIPNYSPEYPILRAITTYQKK----GYQDVNYPQVCIKAKQIYGRLI 867 Query: 659 RSHGCWGEVVIYDK 672 RS +G +I D Sbjct: 868 RSTFDYGYFIILDP 881 >UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2RPW4_RHORT Length = 927 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 163/749 (21%), Positives = 264/749 (35%), Gaps = 98/749 (13%) Query: 24 DFIPRAPQRQMIADVAKTL----AGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 R Q + + + + EA TGVGKTL Y+ P A + T+ Sbjct: 219 GAEARPQQADYASALCVAFQPRATPDWPTLVLAEAGTGVGKTLGYIAPASLWAERNEGTV 278 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALAST-EPT 133 +ST LQ Q+ + L ++ PD K GR Y+C N T Sbjct: 279 WISTYTRNLQRQLDGE----LDRLYPDPAEKMRKVVIRKGRENYLCLLNYEEAVGRLGAT 334 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 Q+ +A + + GD + D L +A+ D + Sbjct: 335 PQEAVALGLMARWIKATRDGD---MVGGDFPGWMVDILGRERSLALADR--------RGE 383 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 C+ +C +Y C A R + A +VVANHALV+ + D + +LDEGHH+ Sbjct: 384 CVFSSCDHYDRCFIERAVRRARRARLVVANHALVLIQAALGGIDDDSRPTRYILDEGHHV 443 Query: 254 PDVARDALEMSAE-ITAPWYRLQL----------------------DLFTKLVATCMEQF 290 D A A R L D L A E Sbjct: 444 FDAADSAFSAHLSGFEGAELRRWLLGAEEGHRSRARGLRRRVDGLYDQAGPLAADLEEAL 503 Query: 291 -RPKTIPPLAIPERLNAHCEE--LYELIASLNNILNLYMPA-----GQEAEHRFAMGELP 342 + +P +RL + +A+ + PA G E + R + EL Sbjct: 504 DGARALPGPGWAQRLAGGTGRGAIERFLATARTQVLARAPASESAHGLETDLRPPLPELL 563 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 D+ + L L L+ + L E+ D R+ +++ Sbjct: 564 DDARAVVAALTDLVVPLKAFVRALVKRLDEEADELDTPTRARIESVARSIERRALGPAQV 623 Query: 403 WR--LASLAQSSGAPVTKWATREEREGQ-LHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 WR AS+A+ A W E EG+ + + H I + L ++VTS Sbjct: 624 WRDMAASIAEDPPADFVDWLELERSEGREVDIGMHRHWIDPTRPFAATLAARAHGLVVTS 683 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFV-------ALDSPFNHCEQGKIVIPRMRVEPSID 512 ATLR S + + +AG + ++ SPF++ ++++ + D Sbjct: 684 ATLR-DGSGDGEADWLSAEARAGAPHLGTPAIRASVPSPFDYPATTRVLV---ITDVKRD 739 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ----RFLDYVTDLRLMLLVQGDQP 568 + +Q A FR L F + ++ R + L L LL Q Sbjct: 740 DLDQVSAAYRELFRAAGGGGLGL-----FTAIGRLRAVHARIAPALDALGLPLLAQHVDA 794 Query: 569 R--YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITE 626 L+E+ R E + L+G + +G+D+ G L + ++ +P D I Sbjct: 795 MDISTLIEIFRAE----EDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRPD----ILH 846 Query: 627 GEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDA 686 K++ ++ + A L Q GRL+R G G V+ D RL ++ G A Sbjct: 847 KARRKAMGGSLYDDR---IARLRLKQAFGRLVRRAGDRGVFVMLDSRLPSRLGG-----A 898 Query: 687 LP-VFPIEQPEVPEGIVKKKEKTKSPRRR 714 P IE+ + + + SPR R Sbjct: 899 FPEGVVIERVGLASAVAIVAQSVGSPRGR 927 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 332 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 156/694 (22%), Positives = 259/694 (37%), Gaps = 74/694 (10%) Query: 26 IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTAN 85 PR QR+M V + L+ EE L +EAPTG GKT YL P + ++K V+T Sbjct: 243 KPRPAQRRMFQLVEEALSREE--ILLLEAPTGTGKTKGYLYPVL----HQRKPTWVATHT 296 Query: 86 VALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDEL 145 LQ Q + L + + ++ +CP L E +++ Sbjct: 297 KVLQAQAMEE-LRAVAQKGYQVRAALVKSPQDTLCPDRLLEAFLREARSGKP----GEDV 351 Query: 146 TPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYREC 205 A+ DL+ + ++ R+ T+ C R C + C Sbjct: 352 GAAIAVLLHYAAQRGHDLEALP----AYWHFLEGFREVRGRVGTNPDRC-RRECPFASAC 406 Query: 206 PFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSA 265 + R +EA+++V N A ++ ++ E LP+ + LVLDE HHL DVA +AL + Sbjct: 407 AYQAILRRREEAQILVTNQAYLLHSLLGEKALPEAR-PALVLDEAHHLEDVATEALTLKV 465 Query: 266 E----------ITAPWYRLQLDLFTKLVATCMEQFR--PKTIPPLAIP---ERLNAHCEE 310 + + P R L + + + R +T+ A+P E L A+ E Sbjct: 466 DGEGLRHLLEALANPSKRSGLLQERDYLKSLEDDLRASAETLAEEAVPKALEALKAYSER 525 Query: 311 LYELIA-----SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 + + S + L L + + + + L E + Q L L + L GL + Sbjct: 526 MERFLKRRGVGSPEHGLTLPLEPSWTRDEEYPL--LDREERHLIQSLEALAKGLEGLLDA 583 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 L+ ++ L +L+ A TR + Sbjct: 584 ------------HPPPWPLLLREIRPLLQELRQAIRLFLRRKRVLKGEADEALHLTRLD- 630 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS-----LNSFSRLQEMSGLKEK 480 I V+ +LE LW + +++TSATL F+ LQ GL + Sbjct: 631 PVTGTWSHLAEPIEVAAELEEKLWPAFRGVVLTSATLAVPTETDPEGFAFLQRALGLPPQ 690 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 A + P+ + +++PR E + + R + L L Sbjct: 691 ARAERLPPSLPY---HRAHLLVPRHLPEARESTLPRFQRLLHRELRLVLGQVP--RTLTL 745 Query: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 F S ++ + DL + + R V R E +G +SF EG+DL Sbjct: 746 FTSLSRLEAAKKALEDLPHLRAPLTRREREDTVRF--ARSNPTEPLAALGSRSFMEGVDL 803 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 L V++ ++ FP SP++ P+E LP A + +Q GRLIR Sbjct: 804 PH--LRVVNLERLPFPYP-SPLLKRRMALAYERGLDPWEDYYLPKAVLSFVQAFGRLIR- 859 Query: 661 HGCW-----GEVVIYDKRLLTKNYGKRLLDALPV 689 G +++DK+LL +Y + ALP Sbjct: 860 -DDRQVAGDGAFILWDKKLLHADYQELFYRALPD 892 Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 67/419 (15%), Positives = 123/419 (29%), Gaps = 52/419 (12%) Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 HH P + EI + + ++ ++ + L ER E Sbjct: 895 AHHFPGDRQAFYRKLEEILGLAFPGAEEELSEEAWAKVKAILAEA--GLGPLERARRLAE 952 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE---------ICQRLAKLTEMLR 360 E++ ++ E R + LP + + L + L Sbjct: 953 EVHGVLVDEARWAKQREAVRAALEGRHLLALLPTGFGKSLAFQIPAWMSPGLTLVISPLV 1012 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 L + ++ L E + LH L+ +A + E ++ RL LA Sbjct: 1013 ALMKDQVDRLQE--LGLPALALHGLMSWGEQASVLDEVRAGQVRLLYLAPERINRSEA-V 1069 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII--------------VTSATLRSLN 466 + RE + V + L + P + +ATL Sbjct: 1070 RKALRELREAGKLVRVVFDEAHCLLEWGYDFRPDYLKVLEWLRELGLPMSFFTATLTPEE 1129 Query: 467 SFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 +RL+E++G+ E L F+ + R P + +A+ + Sbjct: 1130 R-ARLKEVAGIPEAVE----VLPETFHRPN--LRFVVRQA--PGEVGKFDRLAQALLWVE 1180 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQ--GDQPRYRLVELHRKRVANGE 584 K +V S +R + L L V+ L + ++R GE Sbjct: 1181 K-----TGGSAIVYATSRAETERLAWALDRLFPSLGVEAYHAGLGPVLRKEVQERFMRGE 1235 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 V+V +F G+D L V + + + R E +L Sbjct: 1236 SRVVVATTAFGMGVDKPDVRL--VVHWRPPLS------LEEYAQQAGRAGRDGKEAYAL 1286 >UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0X6_DEIDV Length = 1683 Score = 329 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 156/743 (20%), Positives = 264/743 (35%), Gaps = 98/743 (13%) Query: 4 TAALKAQIAAW-YKALQEQIPD--FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 AL A W L +Q+ D PR Q +M V+ TL+G L +EAPTG GK Sbjct: 219 AGALTEVSAVWSEGRLPQQVSDMLPSPRPGQLKMAESVSATLSG--PGRLVVEAPTGTGK 276 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 T +YL P + E K +V+ST LQ+QI K+ LK ++ A G+ Y+C Sbjct: 277 TRAYLYPALLRG-EPGKPVVISTHTKQLQNQIV-KEAQHLKDAGFKVRVVALKGQSNYIC 334 Query: 121 PRNLTALA-------------STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDL---- 163 P L L E ++DL A ++ + R L G Sbjct: 335 PERLQLLLTRRFRPDEVPEADQYEANEKDLSAGVETASDVAEDQRPGRLIMLPGQARAVA 394 Query: 164 ------DTYKWDGLRDHTDIAIDDDLWRR-LSTDKASCLNRNCYYYRECPFFVARREIQE 216 ++ L + L + +++ A C + C + + + + Sbjct: 395 LLTLHAQAGEYGALPPSALTRSPEYLQAKIVTSTVAKRCRDACPFSTCCSYHRTQALVPQ 454 Query: 217 AEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSA------EITAP 270 A+VVV NHAL++ + +V+DE H L D A AL + Sbjct: 455 ADVVVVNHALLLRNQLGGLEQENLPFDRVVVDEAHDLQDAAESALRQEIGSDAILSVARE 514 Query: 271 WYRLQLDLFTKLVATCMEQFRPKTIPPLA-IPERLNAHCEELYELIASLNNILNLYMPAG 329 + R L+ + + R LA + ++ + L + + L + Sbjct: 515 FLRRTHGESAGLLPSIEKAARVAQDANLATLSQKAATAFDVLVARVDTWQAALQAFAMQF 574 Query: 330 QEAEHRFAMGELPD-------EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRL 382 + F D E + + +LT L+ A + + D+ L Sbjct: 575 GQGSEAFGFQAAVDPLPMQSAEWRAVTRASEELTSSLKYCAGFIPSLAQRSSYQMDLEAL 634 Query: 383 HRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSD 442 + LG+ A+S ++G + W V + +S Sbjct: 635 LARLNDQIDTLGVLLARSLPGAHVYAVTANGDSASIW---------------AVPLWLSS 679 Query: 443 QLERLLWRSIPHIIVTSATLRSLN-----------SFSRLQEMSGLKEKAGDRFVALDSP 491 LE LW+ ++ TSATLR F + L E + ++ L Sbjct: 680 VLEE-LWKKTSSLVFTSATLRVPGTWDAKGSGDVADFGVFERDLALPESS---YMVLPPV 735 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 + + G +++ + + + Q L +F + ++R Sbjct: 736 LPYDK-GYVLLTSHLPLVHHPDFSGLVGQEIDNLVTQ----TPNQALHIFTANERLRRAS 790 Query: 552 DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 ++ L + G Q + + +GE L G F +G+D++ L+ V + Sbjct: 791 RHIKKRHLNSVRDGTQRTVQDLH------GDGEWHAL-GSAGFLQGVDIRD--LTLVSLD 841 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW-----GE 666 K FP D V+ + + Y + LP A +Q GRL+R G Sbjct: 842 KTPFPIPD-LVLEAQRRDVNDFETY-WNTLYLPRAVLKFVQGFGRLVR--NDREGLPAGA 897 Query: 667 VVIYDKRLLTKNYGKRLLDALPV 689 V++DKRL +Y R L ALP+ Sbjct: 898 FVVWDKRLAFAHYQDRFLGALPI 920 >UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2NCB3_ERYLH Length = 916 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 145/738 (19%), Positives = 246/738 (33%), Gaps = 93/738 (12%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRH----LAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 R QR DV A E R L +A TG+GKTL YL P A + Q T+ Sbjct: 194 GAEKRDGQRAYAKDVGGVFAPREKRKQPHVLLAQAGTGIGKTLGYLAPASLWADKAQGTV 253 Query: 80 VVSTANVALQDQIYSKDLPL--LKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 VST LQ Q+ + ++ GR Y+C NL + Sbjct: 254 WVSTYTKNLQRQLRGESRRAWPSRRADGSRPVVVRKGRENYLCLLNLEDALQGGFAGRPA 313 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 + +L + GDL + R A+ D + C+ Sbjct: 314 VL---AQLVARWAAYSADGDMIGGDLPGWLGTLFRKRGITALTDQ--------RGECIYA 362 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C +YR+C A R +A++V+ANHALVM P +L DEGHH+ D A Sbjct: 363 GCPHYRKCFIERATRASAQADLVIANHALVMINAARGRHHGQPPTRIL-FDEGHHVFDAA 421 Query: 258 RDALEMSA---------------EITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 + E R L VA+ + + + Sbjct: 422 DSTFAAALTGQEAIELRRWIIGPEKGNRGRRRGLAARLADVASYDDAGGEAVEAAVEAAQ 481 Query: 303 RLNAH--------------CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI 348 L + E L + +L + + LP ++E Sbjct: 482 NLPSDGWIARLVEGTPFGPVEALLGQVRALTYARDESGAQDAGYGIETEVASLPGPLIEA 541 Query: 349 CQRLAKLTEMLR-------GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSK 401 Q +R G E L D + R+ + + + A Sbjct: 542 AQDAQVALAAIRSPLMTLGGRLEAVLEDAPDWLDGQGRARIEGARHSLRWRIDLLAAWES 601 Query: 402 LWRLASLAQSSGAPVTKWATREEREGQ-LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 L LA L + W + E + + H + ++ +++TSA Sbjct: 602 L--LARLGGPADPDFVDWFAVDRNEAREFDIGIHRHWLDPMKPFAHVVLEPAHGVMLTSA 659 Query: 461 TLR----SLNSFSRLQEMSGLKE-KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 TL + + SG + + + SPF++ + +++I + Sbjct: 660 TLTDRGETGEDWQGAIAASGAPHIELQPKTSSAQSPFDYASRAEVLIVTDI-------KR 712 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQP--R 569 +A +A + + VE+ G+L LF + + ++ D + L L Q P Sbjct: 713 GDLAALAGGYARIVEAA-GGGVLGLFTAIKRLRAVYGRIADRLARAGLPLYAQHVDPIDT 771 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L ++ R + ++ L+G + +G+D+ G+ L V + + +P Sbjct: 772 GTLTDIFR----DDRKASLLGTDALRDGVDVPGESLRCVVLEAVPWPRPT-----ILHRA 822 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 ++ N L A L Q GRLIRS G ++ + + RLL A P Sbjct: 823 RRAANGGGAYDDRLIRA--RLAQAFGRLIRSREDAGHFIVL-----SSAFPSRLLSAFPP 875 Query: 690 -FPIEQPEVPEGIVKKKE 706 P+ + + + + Sbjct: 876 GTPVTRLTLDGALERVAA 893 >UniRef50_Q840H8 Putative uncharacterized protein (Fragment) n=2 Tax=Pseudomonas RepID=Q840H8_PSECL Length = 386 Score = 328 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 109/375 (29%), Positives = 175/375 (46%), Gaps = 14/375 (3%) Query: 326 MPAGQEAEHRFAMGELPDEV----LEICQRLAKLTEMLRGLAELFLNDLS-EKTGSHDIV 380 + + HRF G +P+ + +E+ + A+LT++ L +L + E Sbjct: 17 VEGRERPRHRFVGGVIPEHMREMGIELKKGFARLTDLFTRLTDLLKEGMDGEVNIGIASN 76 Query: 381 RLHRLILQMNRALGMFEAQSKLW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + L + +LW + P+ +W T E + + I Sbjct: 77 QAEEWYPLFGSLLSRSQGNWELWTAFTAEDPEDNPPMARWLTLAESGSLFDIEVNASPIL 136 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 + L R LW +VTSATL +L +F R + +GL +KA + SPF+H + G Sbjct: 137 AEEMLRRNLWNVAYGALVTSATLTALGTFDRFRMRAGLPKKAV--TAVVPSPFHHADAGV 194 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLR 558 + +P ++ +P + H A + + VE + G LVLF+S + MQ D + D R Sbjct: 195 LRVPDLKADPR--DAAAHTAAIIRDLPELVEGSR--GTLVLFSSRKQMQDVFDGLDRDWR 250 Query: 559 LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPI 618 + +QG+ + + H+ RV G+ SVL G + F +DL G V I KI F Sbjct: 251 KQVFIQGNLSKQETLNKHKARVDGGDSSVLFGCE-FCRSVDLPGAYCEHVVIAKIPFSVP 309 Query: 619 DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 D PV EW+++ PF S+P AS L+Q GRL+R+ G + + D+RL+T+ Sbjct: 310 DDPVEAALAEWIEARGGNPFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQR 369 Query: 679 YGKRLLDALPVFPIE 693 YGK +L+ALP F E Sbjct: 370 YGKAILNALPPFRRE 384 >UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67KS2_SYMTH Length = 656 Score = 327 bits (839), Expect = 7e-88, Method: Composition-based stats. Identities = 141/702 (20%), Positives = 241/702 (34%), Gaps = 98/702 (13%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 +Y L E F R Q +A+ L EG L EA G GKT +YL+P + Sbjct: 28 RVFYDVLPEH--GFEVREEQIYTAFRIARALT--EGSTLLAEAGPGTGKTFAYLLPAVCH 83 Query: 72 AREEQKTLVVSTANVALQDQIY--SKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALA 128 AR + +VV++A+ L+ Q+ D+ L +++ D+ A YVC + A Sbjct: 84 ARMRGRPVVVASASSVLKAQLTGPDGDIQTLSRLLNLDIDVRVAGNPADYVCEMKVEAGD 143 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + P E A+ G G R + DDLW +S Sbjct: 144 FGSGEE------------PEGWSELIHWARRTG-------TGARSEVP-GVPDDLWELVS 183 Query: 189 TDKA-SCLNRNCYYYRECP-FFVARREIQEAEVVVANHALVMAAMESEAVLPD------- 239 D + +C C C R+ A++VV +H L + + L + Sbjct: 184 WDPSLNC--DTCPRRGHCLMVAARRQHRAAADLVVCDHRLFAQDLLTRNDLLEGGMLPIL 241 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P ++ DEGHH P+ + A S L+ + + + + Sbjct: 242 PSYSAVIFDEGHHFPETWQRAQGWSLSQRRLRRTLERLEYWHAREQVAWRLEAALVAADS 301 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + L+ H E + EL +L+ RL + ++L Sbjct: 302 FMQALDVHTR-------------------PGEGKRDVDRSEL---LLKAAARLDQALDLL 339 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + ++ ++ I ++ AL +F W Sbjct: 340 QTELVTEEAMSEGQSSETELQAYQNRIDELRAALRLFRR---------------PESVVW 384 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 +E V R L + ++ +SATL + GL Sbjct: 385 REGDE--------LWVVPRRPKPLFGGDLLKPGTPVVFSSATLEP----DYQARVLGLSR 432 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 R + PF+ Q + +P + +V L+ Sbjct: 433 FDQSR---VGVPFDLGRQSLVYLPPDEGSGMNAAGPDAAVDAVVDEAVRVLHATGGRALI 489 Query: 540 LFASGRAMQRFLDYVTD--LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 L S ++R+ + L ++ +GD R +E R V SVLVG F EG Sbjct: 490 LVRSLAEVRRWRQALAAHHLPWPVIYEGDGDRGAQLERFRAEVD----SVLVGAG-FWEG 544 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +D++G+ LS V + + FP D P++ ++ + PF LP L Q +GRL Sbjct: 545 VDVRGEALSCVILPYLPFPEHD-PLIRERRGQAQAAGQDPFRAVDLPEMLIKLKQGMGRL 603 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 IR+ G + + D+ ++ + +A P ++ E Sbjct: 604 IRTAEDRGVIALLDRSYRGADWAGAVEEAFPEGARRVTDLAE 645 >UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWJ8_RHOCS Length = 946 Score = 324 bits (831), Expect = 6e-87, Method: Composition-based stats. Identities = 133/702 (18%), Positives = 236/702 (33%), Gaps = 84/702 (11%) Query: 26 IPRAPQRQMIADVAKTLAGEE----GRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 PR Q + V + + EA TGVGKTL YL P A + + + + Sbjct: 227 EPRPQQSDYASAVTHAFTPRDLPGAPNLVLAEAGTGVGKTLGYLAPATLWAEKNKGPVWI 286 Query: 82 STANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQD 136 ST LQ QI + L ++ PD K GR Y+C NL + T Sbjct: 287 STYTRQLQHQIDKE----LDRLHPDPEKKARKVVIRKGRENYLCLLNLEEASLAAQTMPQ 342 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + L + GD + D L + + D + C+ Sbjct: 343 VAV--AMGLMARWAAVTRDGDMQGGDFPGWLVDLLGRGRTLGLADR--------RGECVF 392 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH---- 252 C +Y++C + R + A++VVANHALVM V DEGHH Sbjct: 393 SACPHYQKCFIEKSVRRARRADIVVANHALVMVQAALGGGDDAYVPSRFVFDEGHHVFDA 452 Query: 253 -----------LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQF---------RP 292 + + AE++ L + + E+ Sbjct: 453 ADNAFAAHLTAVETAELRRWLLGAEVSGRSRARGLRRRVEDLIGGDEEAVQLLDHIAHAA 512 Query: 293 KTIPPLAIPERLNAHCEE--LYELIASLNNILNLYM-----PAGQEAEHRFAMGELPDEV 345 + +P A +R++ + + +A + + P E E R + L D Sbjct: 513 RQLPGEAWGQRVHGGEPQGPVERFLALVRQQVYARAAGADGPYSLETEARPPVEGLLDAA 572 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR- 404 E+ L KL L L+ L E + RL + WR Sbjct: 573 AELDSALQKLVRPLEALSARLAEMLDEGADELEAETRRRLDAVSRSLKRRAAMEVAGWRQ 632 Query: 405 -LASLAQSSGAPVTKWATREEREGQ-LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 L L + W E +G+ + + + + + + ++VTSATL Sbjct: 633 MLQELGGETPPAFVDWFGIERIDGRDVDVGMYRHWVDPTVPFAASVGAQAHGMVVTSATL 692 Query: 463 R-----SLNSFSRLQEMSG-LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 + Q+ +G + + SPF++ Q ++++ + Sbjct: 693 TDGTGDVEQDWQAAQQRTGAVHLGKPALRATVPSPFDYARQTRVLVVTDV-------RKD 745 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPR--Y 570 ++++AA +R+ + G+ + + ++ + + + LL Q Sbjct: 746 DLSQVAAAYRELFLAAGGGGLGLF-TAISRLKAVHEKIALPLEQAGIPLLAQHLDGMDVP 804 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 LV++ R + L+G + +G+D+ G L + ++ +P D + E+ Sbjct: 805 TLVDIFR----GEHDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRPDI-LHRARREYF 859 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 R + L Q GRL+R G V+ D Sbjct: 860 DRKARARRHDDMITR--LRLRQAFGRLVRRADDTGVFVLLDP 899 >UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C9XQW7_CLODC Length = 1039 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 128/699 (18%), Positives = 258/699 (36%), Gaps = 74/699 (10%) Query: 15 YKALQEQIPDF--IPRAPQRQMIADVAKTL--AGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 YK + E F R Q ++ + + + +E + IEAPTG+GK++ YL+P I Sbjct: 252 YKTIWENKEGFTYEYRPGQYELTKTIRELFRNSEDEEKIACIEAPTGIGKSVGYLLPAIL 311 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKII---PDLKFTAAFGRGRYVCPRNLTAL 127 AR +K L++ST LQ Q+ +KD+P + + + + G+ Y+C L A Sbjct: 312 EARINKKRLLISTDTKELQIQLINKDIPNVLDSLGLNGKVSYGYIKGKNNYICIDRLEAY 371 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 +Q + + E + GD++ + + +I+ R + Sbjct: 372 IDDYESQNPTKGEILSLIFLKRLVEGGKY----GDIEEINYLVFDNFKEISTH---LRNV 424 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 S D C + C ++C + E++E + V NH+L+ + + +++ Sbjct: 425 SCDPNMCRPKKCK--KDCLYKNRIEELKEEHITVVNHSLLAKWPYKD----EKPLENIIV 478 Query: 248 DEGHHLPDVARDALEM---SAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA----- 299 DE H+L + D S + + F + + +++ A Sbjct: 479 DEAHNLTEKGYDFFSSIINSKSLRYLLQEIYPYEFIQNSSFIYKKYSRNMRKIKAFDKFY 538 Query: 300 -IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG-----ELPDEVLEICQRLA 353 + + +++ I + ++ + G E+ EL ++ EI +L Sbjct: 539 NVLKIGREDKQKIARSINLIIEEIDSILKFGNCNEYNNVSNYNLRWELNLQIDEIVGKLK 598 Query: 354 K-----------LTEMLRGLAELFLNDL------SEKTGSHDIVRLHRLILQMNRALGMF 396 K +E ++ E + +L + D + I + +A Sbjct: 599 KDGIDTEISYRAYSEKIKLSCEKIIKNLVSIIIIIYRNIDDDSIDKEADIYKFGKAKTRD 658 Query: 397 EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 K+ L + ++ F V ++++D E + + I Sbjct: 659 LEDIKIIFEIFLEYDEKDDYARIVEIDKNYN--DFEFRVVPLKIADLFEENILSQLEKGI 716 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 SATL S S + G+ + ++ F++ + +V E Sbjct: 717 FLSATLSLSESMSYFKNTLGIDRVKNVEKI-IEPIFDYKNRVSVVGFSDICEYRNSEFPN 775 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYRL 572 ++++ + K E L LF S ++ + + L + R+ L Sbjct: 776 EMSKIISNISKITE----GHTLALFNSKDRQEKTYEILKKYLHSFNLEIYADKKGIRH-L 830 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 +L+RK V++G + EG+D+ GD L V + K+ P+ T +K Sbjct: 831 NDLNRKC-------VVLGSKGCFEGVDIPGDGLVCVTLDKLPNLNPKDPLYFTI---MKK 880 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 + + P + + Q +GR++RS +G VI+D Sbjct: 881 YGID-YYTINYPQMTIKVKQAMGRILRSKYDYGCFVIFD 918 >UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2 Tax=Aquificaceae RepID=A8URH3_9AQUI Length = 644 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 145/683 (21%), Positives = 256/683 (37%), Gaps = 99/683 (14%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 + R Q + IA V L +EG +EAPTG GKT +YLIP I + ++S Sbjct: 13 KGYDRRESQEKFIALVRDLL--DEGGVKLVEAPTGTGKTFAYLIPLI----TSGQKAIIS 66 Query: 83 TANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 T LQDQ+ +D+ L D+ + G+G Y+C L P ++L Sbjct: 67 TGTKILQDQL-KRDIEFLTGHYKLLTGEDVSYAVIKGKGNYLCIDRLH---KERPPAEEL 122 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 DL +W+G + + + +++ D C Sbjct: 123 GDVP--------------------DLMETQWEGDLTLS--SCTPEAVSKINVDDDYCTPS 160 Query: 198 N---CYYYRECPF-FVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHL 253 C Y EC + + ++++V NHAL+ + + + +LV+DE H L Sbjct: 161 YRSVCPYRSECYYWEKVKLREARSQILVVNHALL-----ALKDFENTEERVLVIDEAHEL 215 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKL----VATCMEQFRPKTIPPLAIPERLNAHCE 309 L ++ ++ W+R + + KL V E F + L E+ E Sbjct: 216 DRYLT--LASTSALSVYWFRELIGVLEKLSGQEVKLSPEDFFRDRLESLFTEEKHEVVLE 273 Query: 310 ELYELIASLNNILNLYMP-AGQEAEHRF--AMGELPDEVLEICQRLAKLTEMLRGLAELF 366 L + L + L+ + + + R E + L + +L E F Sbjct: 274 SLSPYVLDLKDKLSEPIKKVYSDIKERLIAEAEEFLEGRLMVSFKLKGFLESTLLFPPEF 333 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ-SKLWRLASLAQSSGAPVTK-----WA 420 L+ K G D +++ + L E + KL + L + W+ Sbjct: 334 LDRF--KAGYEDPDEEENRLIEKIKKLDYIERKLQKLSQFIRLCEEDKEEFGYKVSKSWS 391 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 + + F + D S +++TSAT+ + ++ +G+ Sbjct: 392 KKLQTYNYKMEIFPVFPRGIIDP------HSYKGVLLTSATIDPED----IEFTTGI--- 438 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 G F L F++ + +I P + E+ + E R H +LVL Sbjct: 439 -GGEFYRLGHNFDYSK-VTFIITN--TNPKREGWEEKLKESYEDIRNL-----HEKVLVL 489 Query: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 + R ++ + D + QG+ L+E R+ G+ VL+GL S G+D+ Sbjct: 490 LTNRRHLK-----LFDGEGDIAKQGEDSLNSLIE----RIREGKIKVLIGLDSLWTGIDV 540 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 +G+ + + K+ F + PV +L+S+ PF A Q VGRL+R Sbjct: 541 RGE--KGILMSKLPFESPEDPVTYHRIRYLRSVGEDPF-EYQRRKAFIKFRQGVGRLVRQ 597 Query: 661 HGCWGEVVIYDKRLLTKNYGKRL 683 G +V+ D R+ Y + + Sbjct: 598 KTDSGTIVLCDNRIW--RYKEFI 618 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 139/711 (19%), Positives = 256/711 (36%), Gaps = 83/711 (11%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ V + L EG+ L +EAPTG GKT YL P + + + + + ++T Sbjct: 250 RPAQEEMLRLVDEAL--REGKRLFLEAPTGTGKTKGYLYPALRLGK--DQRVWIATHTKV 305 Query: 88 LQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTP 147 LQ Q+ + L L + + +CP L L +D +EL Sbjct: 306 LQAQLLEE-LKGLARAGYAVSAALVKSSRDTLCPEALLELFLDARKSED------EELRA 358 Query: 148 NNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID-DDLWRRLSTDKASCLNRNCYYYRECP 206 A + DL+ L + + + + T+ C C +++ C Sbjct: 359 AVGVLIHYAALGESDLE-----ALPAYWHFSRGFREAREHVGTNPRRC-RPVCPFFQTCA 412 Query: 207 FFVARREIQEAEVVVANHALVMAAMESEAVLPD----------PKNLLLVLDEGHHLPDV 256 + + A+++V N A ++A E L P + LV+DE HHL DV Sbjct: 413 YQKLLAHRKGAQILVTNQAYLLAHFLREEPLDAPEEEEAEPKTPPDPHLVVDEAHHLEDV 472 Query: 257 ARDALE--------------MSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL-AIP 301 A +AL ++ +L + E+ + L + Sbjct: 473 ATEALTWVLNHEELTHKLNRLAHPSKESGLLRDSRRLKELSSGARERAKEVREELLHRLR 532 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP---DEVLEICQRLAKLTEM 358 ERL + + + L++ L Y + H + + P E + + L +L E Sbjct: 533 ERLEGYTKRMVALVSQLGTGDPQYGLTLGLSPHWKRLEDWPYLDREERGLMEDLRELREA 592 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 L+ +AE L + + L + ++ + + L Sbjct: 593 LKTIAED-PRTLMARDLAPIGEYLRGALDLLHERRRVLFGKEALNSNLLHVTKLDPVTKS 651 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL-----NSFSRLQE 473 W + V+ L+ LW +++TSATL F+ L++ Sbjct: 652 WMHL------------AQPVEVASDLKAGLWPRFQSVVLTSATLSVPTEKDPEGFALLKK 699 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 + G++ G R L + + +++PR E + + + + Sbjct: 700 VLGIEGAEGQR---LPPSLPYEK-AHLIVPRHLPEARESTLPRFQRMLHQELHTLLGHTR 755 Query: 534 HLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 L LF S + ++ + +L + R + + + +G +S Sbjct: 756 --RSLTLFTSLKRLEAAKKALEGHPHLLAPLTRREREDVAGRIKANPQEPVAA--LGSRS 811 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 + EG+D L+ V++ +I F SP++ +W+ P+ LP ++ Q Sbjct: 812 YMEGVDFP--ALNLVNLERIPFELP-SPLLSRRMDWVYEQGLDPWWDYYLPKSALAFAQA 868 Query: 654 VGRLIRSHGC---WGEVVIYDKRLLTKNYGKRLLDALPV-----FPIEQPE 696 GRLIR G V++DK+LL Y + LP FP+ + E Sbjct: 869 FGRLIRDQREGVGDGAFVLWDKKLLNAPYQEVFYRVLPPGVHRHFPLTRKE 919 >UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus RepID=A4VTT3_STRSY Length = 837 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 134/689 (19%), Positives = 237/689 (34%), Gaps = 132/689 (19%) Query: 9 AQIAAWYKALQEQIP------DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 +I + Y+ L E R Q V K L EE H I+A G+GKT Sbjct: 242 EEIKSAYR-LSEDFSTNIALLGLHERKKQTAFAQVVEKRLVDEEKVH-FIQAQAGLGKTY 299 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPR 122 YL+P +A + + L+V+ LQ+QI K+ LK+I + + ++ Sbjct: 300 GYLLPLLA---KSDQPLLVTVPTKLLQEQIMEKEGSKLKEIF-RIPIVSLKSPKHFIKLD 355 Query: 123 NLTALASTEPTQQ-------DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHT 175 N + + +L +L + T + +E K+ + + D DG + Sbjct: 356 NYWKTLQRQDDNRLVNQFKMQVLVWLCETTTGDL-DELKQKQRYQAYFDEIAHDGKLEPE 414 Query: 176 DIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA 235 + D W+RL+ ++ + +++ NHA ++ ++ + Sbjct: 415 SLFWGLDFWQRLN-----------------------QQALSSRLLITNHAYFLSHLKDQD 451 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 P ++V+DE A + S ++T+ LQ K Sbjct: 452 --PHMDKRMVVIDEAQKFLLAAENLATASQDLTSMLQVLQ---------------SKKDR 494 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 + +RL C+ LN+ L+ + GQ + L +L Sbjct: 495 ATAILDQRLYESCQ------FELNHFLSRFRQHGQREVQK--------------AELHQL 534 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 + L L ++ LNDL + +D Sbjct: 535 GQNLEELGDVDLNDLHQLIDYYD------------------------------------- 557 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 T W + E + + L + I SATL S L ++ Sbjct: 558 -TFWLEEKNLEEKRLAYLRSSK---DSLLNATNYLPDTKIFCISATLTISKKVS-LADLL 612 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 G ++ D P +++ P + +E+H A +A + E Sbjct: 613 GFEQVTLDLI-----PTQTVTNQRLLFPTHLPDILAWTKEEHAAYLATTLGEIAEL--GR 665 Query: 536 GMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 +LVLF S + + D + D + L Q + + +++ GE +L+G F Sbjct: 666 PILVLFTSISMLLQVSDLLEDNNIPHLAQHKHGQEMTL---KRKFERGECQILLGTGVFW 722 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+D I ++ F V L+ + PF SLP L Q +G Sbjct: 723 EGVDFASQNQLIQVITRLPFDNPKDRFVQKINHHLREEGKNPFYDYSLPMMMIKLKQAIG 782 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684 R R V++ D R+ TK YG+++L Sbjct: 783 RTNRHDKQDSLVLVLDPRVHTKRYGQQIL 811 >UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7HQ70_PARL1 Length = 970 Score = 310 bits (795), Expect = 9e-83, Method: Composition-based stats. Identities = 141/768 (18%), Positives = 241/768 (31%), Gaps = 124/768 (16%) Query: 26 IPRAPQRQMIADVAKTLAGEE----GRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 R Q + A + + EA TG+GKT+ Y+ P A + T+ + Sbjct: 230 ERRTGQADFAGAASLAFAPRDAAGAPNVVIAEAGTGIGKTIGYIAPASLWAARNKGTVWL 289 Query: 82 STANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQD 136 ST LQ Q+ + L ++ PD K GR Y+C N LA Sbjct: 290 STYTKNLQRQLDQE----LSRLYPDPAEKAEKAVIRKGRENYLCMLNFAELADRAAMGGG 345 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 +A + + G+ T + + + C+ Sbjct: 346 AVAIGLVARWAKASRDGDMVGGDFPAWLAARLGGVTGRTGL----------TDRRGECVY 395 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLL----------- 245 C YY++C A R+ + AE+VVANHALVM + + + + Sbjct: 396 TACPYYKKCFIERAIRKARRAEIVVANHALVMRQAALDQAMGPVAHRPVKAAEAAGNAED 455 Query: 246 ------------VLDEGHHLPDVARDALEMSAE-ITAPWYRLQLDLFTKLVATCMEQFRP 292 V DEGHH+ D A A + + R + Sbjct: 456 EAPSGREALARFVFDEGHHIFDAADGAFSATLSGLETAELRRWIRGAEGQRGRRGRGIEE 515 Query: 293 KTIPPLA-----------------------IPERLNAHC-----EELYELIASL--NNIL 322 + +A R++ E+ L+ Sbjct: 516 RVGDLIAEDKLAEEALAAALSAAAALPAPGWTARIHDGAPRGAGEKFLALVRQQVHARAE 575 Query: 323 NLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRL 382 + P EAE + L + + L +L L+ +A+ L ++ D Sbjct: 576 DNDSPFSLEAETMPPVPGLMEAAAALDDALKRLAAPLQLIADRLRARLDDEAEDLDTSTR 635 Query: 383 HRLILQMNRALGMFEAQSKLWR--LASLAQSSGAPVTKWATREEREGQ-LHLWFHCVGIR 439 R+ WR LASL ++ W + E G+ + + H Sbjct: 636 IRMDAAARGLDRRVRILIPSWRSMLASLNAATPEAFVDWFSVERLYGREIDMGMHRHWRD 695 Query: 440 VSDQLERLLWRSIPHIIVTSATLR--------SLNSFSRLQEMSGLKE-KAGDRFVALDS 490 + + +++TSATLR + + +G R + S Sbjct: 696 PTIPFADAVLEPAHGVLITSATLRDRLVEEAEDDEGWETAEIRTGASHLAVPARRAFMAS 755 Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550 PF++ +Q +I + R I+ E+ G L LF + ++ Sbjct: 756 PFDYEKQVRIFVVRDVSRTDINQVASAYRELFR--------AAGGGALGLFTAIHRLRAV 807 Query: 551 LDY----VTDLRLMLLVQGDQP--RYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + + + L L Q LV++ R + L+G + +G+D+ GD Sbjct: 808 HERIVTPLEEAGLELYAQHVDALDTATLVDIFRAE----RHACLLGTDAVRDGVDVPGDS 863 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS--FNLIQQVGRLIRSHG 662 L + ++ +P D + E F L Q GRLIR Sbjct: 864 LRMIVFDRVPWPRPDI-LHKARREQ--------FGKARYDDMLTRLRLKQAFGRLIRRAT 914 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEKTK 709 G + D RL T+ L A P + + + E I + + Sbjct: 915 DRGVFIALDARLPTR-----LTSAFPRGVTVHRVGLAEAIDESRRFLS 957 >UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK23_9CAUL Length = 986 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 146/762 (19%), Positives = 251/762 (32%), Gaps = 111/762 (14%) Query: 26 IPRAPQRQMIADVAKTLA----GEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 R Q+ + A E+ L +EA TG GKTL YL P A + Q + + Sbjct: 240 EGRPEQQAFALKTREMFAPKWASEQPNMLLLEAGTGTGKTLGYLSPSRLWAEKAQGRVWI 299 Query: 82 STANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 ST ALQ QIY+ L + + K GR Y+C N P Q Sbjct: 300 STYTKALQKQIYNDTRALFDTEGERENKVAIRKGRENYLCLLNWQE--RLAPLTQGPGEA 357 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL-WRRLSTDKASCLNRNC 199 + L + + GD T+ L + A+ L L + C+ C Sbjct: 358 IVAALVARWIVYSRDGDIVGGDFPTWLPSLLPAGSAAAMFGALNPANLVDRRGECIYSAC 417 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMA-----------AMESEAVLPD--PKNLLLV 246 +YR C + R+ + A++++ANHALVMA A + EA + P LV Sbjct: 418 PHYRTCFVEKSIRKAKSAQIIIANHALVMAQAAYDLREAAKAEQGEATMEPEAPGLSRLV 477 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 DEGHH+ + A A + + + + LA E Sbjct: 478 FDEGHHVFEAADGAFSSELSGFEAYELRRWIRGNEGRGRRSRGLEQRLGDLLATREVAQN 537 Query: 307 HCEELYE---------------------------------LIASLNNILNLYMPAGQEAE 333 ++L L A+L I + ++ Sbjct: 538 ALKDLIRAAHLLPSEGWSQRLTTRTQSGEMMAPSGPIEALLAAALKQIEVRGQESASKSR 597 Query: 334 HRFA-----------MGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRL 382 +R + E+ + + L + L L + L+ + D+ Sbjct: 598 YRPEADNAECEAHPCLPEVSEAASAAAKALQAIEAPLLALVRAIEDILTGEE-EIDLAER 656 Query: 383 HRLILQMNRALGMFEAQSKLWRL----ASLAQSSGA----PVTKWATREEREGQL-HLWF 433 RL + WR + A+ P W G+L + Sbjct: 657 TRLDGALRGLERRARMTLPAWRSLLQQLAYAEDEDPMQPSPYVDWFATISHGGRLVDVGL 716 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSL--------NSFSRLQEMSGLKE-KAGDR 484 H + S L + + +++ SATL + F+ ++ +G G + Sbjct: 717 HRHFVDPSVPLADYVLKPAHGVLMASATLSDKALAEHPDEDPFALARQRTGAAHLSMGAK 776 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + + SPF++ Q ++ + D+ + M A F L + Sbjct: 777 SLRIASPFDYEAQARLFVVTDVP---RDDPRAVASAMKALFLAAGGGGLGLF-----TAI 828 Query: 545 RAMQRFLDY----VTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 R ++ + + + + L Q P V + S L+G + +G+D+ Sbjct: 829 RRLKAVYEQLFRPLGEAGISLYAQHVDPLD--VSDLISVFRSERHSCLLGTDAVRDGVDV 886 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 G L + +I +P D + ++ +L A L Q GRLIR Sbjct: 887 PGQALRLIAFDRIPWPRPD-----ALHKARRAHFGAKLYDDALVRA--KLAQAFGRLIRR 939 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGI 701 G V+ D T+ L +LP +++ + E + Sbjct: 940 ADDRGVFVMLDSAAPTR-----LFASLPDGVVVQRCTLAEAL 976 >UniRef50_B4U7P2 Helicase c2 n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7P2_HYDS0 Length = 730 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 139/765 (18%), Positives = 271/765 (35%), Gaps = 158/765 (20%) Query: 24 DFIPRAPQRQMIADVAKTLA-----GEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 + R Q +M + V + + EE + IEAPTGVGK+ YL+P I E K Sbjct: 11 GYERRKSQEKMFSIVEECINKEDFDDEEQNVVLIEAPTGVGKSFGYLLPII----EHGKQ 66 Query: 79 LVVSTANVALQDQIYSKDLPLLKKI-----IPDLKFTAAFGRGRYVCPRNLTALASTEPT 133 ++ST LQ+Q+ +DL L I + + G+ Y+C E Sbjct: 67 AIISTKTKILQEQL-RRDLEHLSSIRKNYFGKGINYLILKGKANYLCLDRFYD-KENELK 124 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 Q + + ++ +++ WDG + T+I ++ +W ++ D+ Sbjct: 125 QTTIFG------------KVSLANTIRELIESSGWDGDIEFTNIPLE--VWTDINIDENY 170 Query: 194 CL---NRNCYYYRECPFFVARREIQE-AEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 C ++C Y ++C ++ ++ ++ A+++V NH+L++ D + +LV+DE Sbjct: 171 CDSNYRKSCPYLKDCFYYKKLKDKEKLADILVINHSLLVL-----KNFDDTEEKILVIDE 225 Query: 250 GHHLPDVARDALEMSAEITA--PWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN-- 305 H L + +L + + D+ ++ I L Sbjct: 226 AHELDEALVKSLTSGFSVISLMRLVASIRDMLPNDNKNMLDNVDILEIERWNRVSELRSV 285 Query: 306 AHCEELYELIASLNNIL--NLYMPAGQEAEHRFAMGELPDEV------------------ 345 E++++L L ++ Q+ ++ +G+ P + Sbjct: 286 NGMSSFQEMLSTLFKRLFEGIFENKKQKPTNKSTIGKAPSSIPLDKPFFVEPLISMVYEP 345 Query: 346 -----------------------LEICQRLAKLTEMLRGLAELFLN----DLSEKTGSHD 378 I ++ E FLN D SE Sbjct: 346 LNQAVNVIKNYVINIVKERLEYKNTISRKFKAFLESSLLFENEFLNRFSIDTSELQDDFA 405 Query: 379 IVRLHRLILQMNRALGMFEAQSKL-----WRLASLAQSSGAPVTKWA---TREEREGQLH 430 RL ++ R + F++ S L + + + ++ G + Sbjct: 406 DGSADRLEREIMRLIAKFKSISNRVSNIYNTLKYMEDEENKDIIGFVVSREFSKKLGDFN 465 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490 I D ++ + ++I+TSATL ++ +G+ + +L+ Sbjct: 466 YKIEAFPIFPRDAID---LSNYKYVILTSATL----DKDLIELTTGISG----EYHSLEH 514 Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550 FN+ + I + V + D ++ + + R + +LVL S M+ Sbjct: 515 VFNYED--VSFIIKNIVPKNKDLWKEELINSLRYLRTF-----YSKVLVLLTSYEQMEYI 567 Query: 551 LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 ++ Q + +E+ V NG+++VLVG+ S G+DLKGD + + Sbjct: 568 -----PKDEDIIFQNTTTLRKAIEM----VENGDKNVLVGVDSVWTGIDLKGD--KGLLM 616 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNR--------------------------YPFEVQSLP 644 K+ F + P+ + K N+ F + Sbjct: 617 AKLPFDSPEDPINYHRMRYFKKHNKATTSHFGSMEQAMAHSSSEKCLKHTMDGF-IYMRK 675 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR--LLDAL 687 A Q GRL+RS G ++I D R+ Y + + +L Sbjct: 676 KAFLQFKQGFGRLVRSKKDKGTIIICDSRIW--RYEEFINFIKSL 718 >UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=Methanococcales RepID=Y942_METJA Length = 651 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 141/684 (20%), Positives = 251/684 (36%), Gaps = 99/684 (14%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 ++E+ P R PQ++M+ + + + + R+L +EAPTGVGKTL YLIP + A Sbjct: 5 GYIKEKFPYPKVREPQKRMMLKIYECIKNK--RNLIVEAPTGVGKTLGYLIPALYFAER- 61 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 +K +++ T + Q +IY L + +LK G+ ++C Sbjct: 62 RKRVLILTETIDQQVRIYED----LSSLRHNLKVAFLMGKSNFICKSKGGKANR------ 111 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 KR G G + + Sbjct: 112 ----LYCQLNKKCLYRPNKRPICYCGTKKQPVNLGDK----------------------V 145 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPD 255 C Y C + A+ E A++VV N+++ E + +++ DE H L Sbjct: 146 IYYCPYCT-CEYQKAKIESILADIVVMNNSMF--YYAKEDIEAKRDIDIIICDEAHKLES 202 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 R+ + P RL ++ P + +RL+ E +E+I Sbjct: 203 SIRNTSTIIINPELPINRL--------------KYMAIHYAPNILKKRLDIGDENFWEII 248 Query: 316 ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL--FLNDLSEK 373 + + +E F L + LA L +L ++ N + Sbjct: 249 EKYLTSRGINIDICKETII-FDGENLSS--WKYKTELAVLGAILDAYYQINNIKNKILRF 305 Query: 374 TGSHDIVRLHRLILQMNRALGMFE----AQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 + +I R N+AL E + KL L L ++ + Sbjct: 306 NENEEIDREELRFEIDNKALIAIELDFIHKKKLSDLYLLEFIENIKNLRYINENYVVYRS 365 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 C + VS L+ L ++ +I SAT+ + +GL + F+ L+ Sbjct: 366 GNSLLCEPVFVSSHLKELYGNAV--VIHCSATI---GNLKMHALKTGLDKA---EFLILE 417 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 SPF + KI+ + V+ + +++ E A ++ + LVLF S + Sbjct: 418 SPFP-KNRKKIIALKDGVDMKYERKDR---EKANKNLLKILEAINGNSLVLFKSFEDLDS 473 Query: 550 FLDYVT---------DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 F Y+ + + + QG + + ++R +L+ FAEG+D+ Sbjct: 474 FYKYLKREITKTNIKNKNIHVYEQGMDGKEA--KELKERFEKI-GGILLATGRFAEGVDI 530 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR---------YPFEVQSLPSASFNLI 651 G+ L V I + FP P+++ E + L+ + F + S + L+ Sbjct: 531 PGEALVGVVIDSLPFPVPT-PLILREQKILEERFKIRGVRDAHWRAFLMTSFDRMARTLV 589 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLL 675 Q +GRLIR+ +G VVI DKR Sbjct: 590 QMIGRLIRTENDYGVVVIQDKRFA 613 >UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhodospirillales RepID=Q0BQ29_GRABC Length = 968 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 137/770 (17%), Positives = 239/770 (31%), Gaps = 111/770 (14%) Query: 26 IPRAPQRQMIADVAKTLAGEEGR----HLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 R Q + A + R + EA TG GKTL Y+ P A ++ + Sbjct: 218 EQRPGQADYAGAASAAFAPRQSRGDPHLVLAEAGTGTGKTLGYIAPASLWAERNHGSVWI 277 Query: 82 STANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 ST LQ QI + L +I K GR Y+C N ++ + Sbjct: 278 STYTRHLQRQIEGELARLFPDPVIRRQKTVLRKGRENYLCLLNFEDAVAS------VAGL 331 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 P + GDL G L L+ + C++ C Sbjct: 332 AHTRTIPLALLARWALVTEDGDLQGGDLPG---WLPELFGGGLLPALADRRGECIHAGCG 388 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 ++++C + R + A++VVANHALVMA + V DEGHH+ D A A Sbjct: 389 HWKKCFVEHSIRRARGADLVVANHALVMAQAVWGGLDDTTVPTRYVFDEGHHVFDAADGA 448 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE------------------ 302 SA ++ + + + Sbjct: 449 F--SAILSGMETAELRRWLRGAEGGRSRARGLRRRLEELVADDPDLQAPLEAALTAATAL 506 Query: 303 -------RLNAHCEELYEL-----------------------IASLNNILNLYMPAGQ-- 330 RL ++ E +L ++L A Sbjct: 507 PPQGWQMRLAEAAQDAQEHPDSSPGNILLPDLGGIEAGRQNPAEALLHLLRRQALARSND 566 Query: 331 ---------EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR 381 EA+ + ELPD + + L ++ + L+ L + + L ++ + D Sbjct: 567 KTELPRTAIEADLHPVLPELPDAAAVLDRALDRILQPLKTLRQRLADRLESESDTLDQPT 626 Query: 382 LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP-------VTKWATREERE-GQLHLWF 433 R+ WR LA S P + + + G + Sbjct: 627 RSRIEATCRSLGRRAIDPLSAWRTMLLAIQSPPPEAGLRPEHVHFIRLQRGDTGDRDVGL 686 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV------- 486 H + + L +++TSATLR + + + G + Sbjct: 687 HRHWLDPTIPFTATLASPAHGLLITSATLRDGGMEDQAAAWEAAEAQVGAPHLPSPAIRA 746 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 AL SPF++ Q + I + A + + L Sbjct: 747 ALASPFDYATQTRAFIITDVGYELAALAAAYRTLFLAAGGGGLGLFTAITRL-----RAV 801 Query: 547 MQRFLDYVTDLRLMLLVQGDQP--RYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 R + + +L Q LV++ R + S L+G + +G+D+ G Sbjct: 802 HARIAPTLEAEGIQVLAQHVDAMDNTTLVDVFRTEID----SCLLGTDAMRDGVDVPGRA 857 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L V ++ +P D ++ + P L Q GRL+RS Sbjct: 858 LRLVAFERVPWPRPD---ILHRERRIHLSGGMP-SAYDERITRMRLRQAFGRLVRSASDR 913 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKSPRR 713 G ++ D+R ++ LL A P + + + E + + ++ + Sbjct: 914 GVFILLDRRTPSR-----LLSAFPPGVTVRRVGLAEAAAETADFLRTEHK 958 >UniRef50_A6UVN5 Helicase domain protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVN5_META3 Length = 706 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 127/706 (17%), Positives = 264/706 (37%), Gaps = 105/706 (14%) Query: 19 QEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 P + PR Q++M+ + ++ + ++L +EAPTGVGKTLSYL+P + A++ K Sbjct: 16 SSNFPYYEPRPQQKKMMESIFYSIVNK--KNLVVEAPTGVGKTLSYLLPSLYFAKQ-GKR 72 Query: 79 LVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 +++ T + Q++I+ L + +LK + G+G + C Sbjct: 73 VMILTETIDQQERIFED----LNSLKHNLKVSFMMGKGNFYCKAKEDKANRLYCQYNKKC 128 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 + ++ N +K KL D Y Sbjct: 129 SHRPNKKPYCNCGTKKEIIKLNDDEPKY-------------------------------Y 157 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 C + C + A+ + +A+++V N+++ + + +++ DE H L R Sbjct: 158 CPFC-ICDYQKAKIQGLDADIIVMNNSIY--YYIKDEIDVKRNTDIIICDEAHKLEGSIR 214 Query: 259 DALEMSAEITAPWYRLQL---DLFTKLVATCMEQFRPKTIPPLAIPERL----NAHCEEL 311 ++ +S RL++ + + +++ + RL ++ EE Sbjct: 215 NSATISINPDNALNRLRIMAYNYAPNTIKKYIKRLNDEYEQYDENYNRLGYFNQSYNEEF 274 Query: 312 YELI-------ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE------M 358 + +I A +++ N + G+ F + E + + ++ + + Sbjct: 275 WNIINNFVSKYADISDCKNTLIFDGERITS-FGLKEDVAILGTLLDGYNQIIKIKNKINL 333 Query: 359 LRGLAELFLNDLSEKTGSHDIV--RLHRLILQMNRALGMFEAQSKLWRLASLAQS----- 411 EL +L K + +V + + + + E + L ++ + Sbjct: 334 FEENRELRKKELDFKIDNKALVPIEFQYIFDRRVSDMPLMEFLDSIKDLKTINSNFVIYK 393 Query: 412 --------SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 + + + + + C + VS+ L+ L + +I SATL Sbjct: 394 SGNSNNNNNNNNNSNNNSNNNSGSRSNSNLLCEPVAVSNYLKNLY--NGATVIHCSATL- 450 Query: 464 SLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAA 523 + +G+ + + LDSPF+ + KI+ R E D+ ++ A Sbjct: 451 --GNLKIHALKTGM---GSSQTLTLDSPFS-EHRRKIIALRDGEEMKYDSNKEKKRNKAN 504 Query: 524 FFRKQVESKKHLGMLVLFASGRAMQRFLDY------VTDLRLMLLVQGDQPRYRLVELHR 577 ++ LVLF S + + + + ++ + G + + + Sbjct: 505 NNILKLLKSAKCNSLVLFKSFEDLNSCYAHLLNNNNLLNQKIYIYEAGMDGKEA--KELK 562 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS----- 632 ++ +L+ FAEG+D+ + L+ V I + FP P++ E + ++ Sbjct: 563 EKFERN-GGILLATGRFAEGVDIPREALTMVIIDSLPFPVPT-PLINREQKMIEDGLKRK 620 Query: 633 ----LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 N F + S S +IQ +GRLIR+ +G VVI DKR Sbjct: 621 KVNNANWTAFLMTSFHIMSRTIIQMIGRLIRTEEDYGVVVIQDKRF 666 >UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium perfringens RepID=Q8XL45_CLOPE Length = 781 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 143/691 (20%), Positives = 246/691 (35%), Gaps = 116/691 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI--AREEQKT 78 P R QR++ V K++ EG+ EAPTG+GKT+S L P + A+E QK Sbjct: 186 NFPFKSYRKGQRELAIRVYKSIT--EGKKCFAEAPTGIGKTMSTLFPAVKALGAKETQKI 243 Query: 79 LVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 ++ +I + L ++++ G + R++ A Sbjct: 244 FYITAKTTT--REIANNTLRIMRE----------KG----LNLRSVNITAKE-------- 279 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 EE+K + +G D +IA+ + L + D +N+ Sbjct: 280 -------KCCKMEEKKCIPEY-----CPYANGYFDRVNIALKEALRHKEEYD-LEYINKL 326 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD--PKNLLLVLDEGHHLPDV 256 Y CPF + +VV+ ++ + S + + K+ +++DE H+L D Sbjct: 327 SKEYNICPFEFSLELSNFCDVVICDYNYIFDPQASLKGILEGKAKDYTILIDEAHNLLDR 386 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 R +F +F+ K +R N + E +++ Sbjct: 387 GRSMYSS-------------KIFKDDFLKLKREFKSKDKGIYNSLDRANKYLIEKRKVLE 433 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 +L + + L +LRG E D+ E S Sbjct: 434 NLETKSLVEKEEP-----------------------SDLYGILRGFLEKV--DIYESKSS 468 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 + L L + L + + + L L +C Sbjct: 469 EENSNLLELYFNVYEFLNICGYYGEDFTTLYKLD---------------GNNLELSINC- 512 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + S L + + +I+ SATL + +E+ G +E GD V L SPF++ Sbjct: 513 -LDPSRIL-KSIMNRFKSVIIFSATLLPME---YFKELYGAQE--GDYSVNLTSPFDYKN 565 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-- 554 K+ I V + N ++ + ++ + + +SK+ LV F S M + + Sbjct: 566 --KLTIVGKDVSTTYSNRKRTLPKIVNYIIECAKSKRG-NYLVFFPSYEYMWMVHEEIKK 622 Query: 555 TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ----SFAEGLDLKGDLLSQVHI 610 ++ L+ QGD E G +GL F+EG+DL D L V I Sbjct: 623 REVDFSLVAQGDHMNEEEKEEFLSLFKEGGEKTHLGLAVLGGHFSEGIDLTLDKLIGVII 682 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 + P I + E+ S+ + F+ + ++Q GR IR+ G V++ Sbjct: 683 IGVGMPKICLER-ESIKEYYNSIGKNGFDYAYVYPGIIKVLQAAGRCIRTEKDKGVVLLL 741 Query: 671 DKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 D R T Y K LL F I E EGI Sbjct: 742 DDRYFTNKY-KSLLPREWFFNI-LVESEEGI 770 >UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environmental samples RepID=Q64EP0_9ARCH Length = 644 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 134/702 (19%), Positives = 252/702 (35%), Gaps = 84/702 (11%) Query: 18 LQEQIPDFIP----RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 ++E P F P R QR+ + DV + + G G LA APTG+GKT++ L+P + A Sbjct: 1 MEEDKPFFFPFPSIREGQREFMEDVKQAVEG--GNILAAHAPTGIGKTVAVLVPALQYAI 58 Query: 74 EEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPT 133 + KT+ T+ + Q +I L L+K+ + +CPR A Sbjct: 59 QNDKTVFFLTSKRS-QHKIAIDTLRLIKERAKLNFVVVDIISKQSMCPR-----AKAGSI 112 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 ++ + + E++ R + + D +RD + W Sbjct: 113 YREFYSLFSE---FCRSEQKNRRCRYFVNRDEEAQQRIRDKIMHVEELYEW--------- 160 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP----KNLLLVLDE 249 C + CP+ A + A+V+V ++ + ++ +E VL +++++++DE Sbjct: 161 -----CSFRGVCPYKAALEVGESADVLVCDYNYLFSSDIAETVLEKIGKGLEDVIVIVDE 215 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H+LPD R+ L ++ T E I + L Sbjct: 216 AHNLPDRIRNNLSSELRMS----------------TITEAAHGLRRTNREIYDNL----M 255 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE--ICQRLAKLTEMLRGLAELFL 367 EL + A L + F + + + + LR +AE Sbjct: 256 ELETIFAKLAMAARKNKKEEMNVDRDFLVDGMEKVLRRKIVAMSYDDFVNSLRNIAERSG 315 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 +++ + L R +L + L + K R+ S++Q + P Sbjct: 316 TSETDENTKYKDEALQRNVLNIADFLDEWRTNEKCLRIFSVSQHNENP------------ 363 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 H + S + + I+ S TL ++ + S + K + + Sbjct: 364 ----SLHFKLLDPS-IVSEPAFAGAHSTIMMSGTLCPAEMYAEILGASSDRIKGKEIVLR 418 Query: 488 -LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 SPF E IV+ R E+ +++A + E + GM V F S Sbjct: 419 EYKSPFP-EENRLIVVTRGLTTKYTKRGEEMYSKIAGKIAEVAEYVQG-GMAVFFPSYAL 476 Query: 547 MQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGD 603 + Y+ ++R +V+ + R + + +L+ + SF+EG+D + + Sbjct: 477 QRDIAVYLPEEVRRKAIVERREMRKEEKNRLYELLREDSGGILLAVQGGSFSEGMDFESN 536 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLN-RYPFEVQSLPSASFNLIQQVGRLIRSHG 662 +L + + + P V EG + A ++Q GR IRS Sbjct: 537 MLKAIIVVGLPLSPPTLEVKTIEGYYAGKYGAEKGKLYGYYYPAITKVLQAAGRGIRSEH 596 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVK 703 +V+ D R Y + LP + ++ + E K Sbjct: 597 DRCIIVLMDYRFAKYPYK----NCLPSDYNVKLTDRAEEFAK 634 >UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIV9_ARTCA Length = 749 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 157/749 (20%), Positives = 261/749 (34%), Gaps = 142/749 (18%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 L IP R Q ++ D+ + H+ APTGVGK+ S L P + A + Sbjct: 11 RLSTGIPTADARPGQVALLDDIEAAI--RATGHVCGVAPTGVGKSFSLLAPAMVAAAKYD 68 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTE 131 + ++ST ++AL QI KD P+ + K G YVC + ++ + Sbjct: 69 QRTIISTESLALLSQILLKDAPVAAAACEKVTGTRPKVAVLKGFSNYVC-----SQSARD 123 Query: 132 PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYK--------------------WDGL 171 +Q P+ + + KR A K + G Sbjct: 124 AAEQLTDTVGQRPSLPSLRSKLKRLANQKNVFLDGRPFDAANGVPLLLWALSLAADQAGD 183 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 + + +LW +S + C+ C + C AR + EA++VV NH+++ Sbjct: 184 KQSYEGVTTPELWDAVSVGPSECIGDTCPIFDLCKPRAARAKAAEADIVVTNHSMLAVQA 243 Query: 232 ESEAVLP-----DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATC 286 + + ++++DE H LP R A + TK V+ Sbjct: 244 AKGVPVIIGNKTLGEFHIIMIDEAHALPANVRSAGASEVS------AAAVMSLTKSVSRT 297 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL 346 +++ P + + NA EL + +A + Y G+ + + Sbjct: 298 LDESDP---AVGRLIKEGNALAIELEDELAEMAK----YTKPGEVCK-----------IK 339 Query: 347 EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR---LHRLILQMNRALGMFEAQSKLW 403 E + +M+ G A N L + S +I RL +++ +G Q KL Sbjct: 340 ETADPVETTGDMMIGWARSVKNALDGVSKSKNIQSKLKAKRLAGRLDAFIGAV-GQVKLH 398 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWF-----HCVGIRVSDQLERLLWR-------- 450 R+ +W ++ + + + +S L+ LW Sbjct: 399 RI---------GTARWIEQKTPPANAKVQTPYWCANASPVNISGLLQANLWTAPVMVDEE 449 Query: 451 --------------------SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490 +I SATL + F GL + VA S Sbjct: 450 DEMVQAMKEAGEPIEEETETYPMTVIAVSATL--PSRFGY---QVGLTAEN----VAYPS 500 Query: 491 PFNHC-EQGKIVIPRMRVE----------PSIDNEEQHIAEMAAFFRKQVE--SKKHLGM 537 PF+ + + IP++ E P + A +K VE Sbjct: 501 PFDKAYDDSLLYIPKLTPEEIPEMFPGWRPGTKGKFNGALHQAWATKKNVELVEANMGSA 560 Query: 538 LVLF---ASGRAMQRFLDYVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQS 593 L+L +G+A L R + Q D +L L R V SVLVG +S Sbjct: 561 LILSANSTAGKAYAAALRRAAKGRWNVYSQWDGLSTQQLTNLWRDDVK----SVLVGTKS 616 Query: 594 FAEGLDLKGDLLSQVHIHKIAFP---PIDSPVVITEGEWLKSLNRYPFEVQ-SLPSASFN 649 F G+D KG S V I +I P+D V + L+ + ++ + + A+ Sbjct: 617 FMTGVDAKGRTCSLVTIDRIPRAAGNPVDDARVEAIMDALQ-IGKWAADTYVYVSDAALL 675 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 L Q +GRLIRS +G I D R+L Sbjct: 676 LEQALGRLIRSVSDFGMAAILDPRMLKTG 704 >UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6_THECD Length = 844 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 115/470 (24%), Positives = 175/470 (37%), Gaps = 64/470 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M VA+ +A G HLA +A TG GK+L+YL+P I A T+VVSTA +A Sbjct: 31 RPGQVRMAEAVARAIA--TGEHLAAQAGTGTGKSLAYLVPAIRHAVAADTTVVVSTATIA 88 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ +DLP L + + L +F GRG Y+C + A EP + A D Sbjct: 89 LQRQLVDRDLPRLAEALRPLLGQEPRFAILKGRGNYLCLHRVHTGAPDEP---EDAALFD 145 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYY 201 + + KR + G T G RD + + WR++S CL + C + Sbjct: 146 PQQLSALGRQVKRLHEWAGQTVT----GDRDELVPGVSEQAWRQVSVSARECLGAQRCPH 201 Query: 202 YRECPFFVARREIQEAEVVVANHALV-MAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 C AR E +A +VV NHAL+ + A+E VLP ++ ++++DE H L D A Sbjct: 202 GESCFAEQARAEAGQAHIVVTNHALLAIDALEGRQVLP--EHDVVIVDEAHELVDRVTAA 259 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN 320 S ++ P +L+ + +RL E+L L+ L+ Sbjct: 260 --GSGALSGPAAETAARRCGRLI-------------EEGVADRLKEAAEKLAALLEDLSA 304 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 +P + + + + + Sbjct: 305 GRLDVLPEPLGRALAALRDAAHACLTALGS-------------DRADDPAALAARRAVRS 351 Query: 381 RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER------EGQLHLWFH 434 + L R L FE Q + W + + H Sbjct: 352 TVEELHDTAVRMLESFE-----------PQLAARSDVVWLDKPLTGPAAPDGPRRPPTLH 400 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 I V L L+ I+TSATL SF L GL + + Sbjct: 401 IAPISVGGLLRTALFG-TRTTILTSATLTLGGSFEPLARQWGLPPLSSAQ 449 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 100/229 (43%), Gaps = 12/229 (5%) Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + SPF+H + G + + R +P D E ++ E+A L LF+S Sbjct: 624 LDAGSPFDHAKAGILYVARHLPQPGRDGLPEAYLTEIAELI-----EAAGGRTLGLFSSM 678 Query: 545 RAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 RA ++ + + L LL QG+ LV KR A ER+ L G S +G+D+ G Sbjct: 679 RAARQAAEELRGRLGHPLLCQGEDATSLLV----KRFAEEERTCLFGTLSLWQGVDVPGP 734 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 L V + +I FP D P+ + + F + A+ L Q GRL+RS Sbjct: 735 SLQLVIMDRIPFPRPDDPIASARQRAVAARGGNGFMAVAATQAALLLAQGAGRLLRSATD 794 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVPEGIVKKKEKTKSP 711 G V I D RL T YG L +LP F P V G +++ + S Sbjct: 795 RGVVAILDPRLATARYGGFLRSSLPPFWTTTDPAVVRGALRRLDAAVSA 843 >UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillus gasseri JV-V03 RepID=C0XBA8_9LACO Length = 773 Score = 288 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 140/683 (20%), Positives = 261/683 (38%), Gaps = 114/683 (16%) Query: 26 IPRAPQRQMIADVAKTLAGEE--GRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 PR Q QM D+A L ++ + + +EAP G GKTL LIP I + K + T Sbjct: 22 KPRVSQVQMSLDIADFLYNKKIRSKIMFVEAPVGTGKTLGALIPTILYSSNFHKRITYVT 81 Query: 84 ANVALQDQIYSKDLPLLKKI---IPDLKFTAAFGRGRYVCPRNLTA-LASTEPTQQ-DLL 138 LQ Q++ +DL +LK I +P + A G+ Y C NL + +P Q+ D+L Sbjct: 82 GTKNLQRQVFYEDLEMLKGINLMLPSSETVLAMGKDNYACIDNLHNNRSKFQPAQRFDML 141 Query: 139 AFLDDELTPNNQEE--QKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + D+ T + E K A+ + L ++WD + ++ + +C Sbjct: 142 KKILDQTTTGLRVEIDNKLKARDQDPLSDFEWDLI--------------KIKGKQKACKI 187 Query: 197 RNCY--YYRECPFFVARREIQEAEVVVANH-----ALVMAAMESEAVLPDPKNLLLVLDE 249 NC YRE ++ + V N +L+ E +++ ++V+DE Sbjct: 188 YNCPGHRYRETF-------NKKPFLTVTNQNQMIQSLINVIEEKNSIVSVTPG-IIVVDE 239 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 + ++ S I+ + K ++ + + + LN Sbjct: 240 AQLFDNSFLGVVKNSLNISELKKLTVKTKYIKKFNDNLKIIQKEFLKIKNKDYGLNT--- 296 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 R+ + + + L Q + +E + L N Sbjct: 297 -------------------------RYPVPKTVFQSLHNIQECLQSSENIELFGILNKNP 331 Query: 370 LSEKTGS-HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQ 428 ++ +I+ I M+ A K + + ++ + +W + + Sbjct: 332 YAKYEDLIFNILNTKDSISWMSIA--------KENEITFIPKNFYKKIKEWIQKLSVYNK 383 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS-FSRLQEMSGLKEKAGDRFVA 487 II S TL + N+ ++ G+K+ ++ Sbjct: 384 --------------------------IIFLSGTLTNTNNPIQEIENEWGIKDFIYKKY-- 415 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 +SPF+ +Q +++P +++N+ +H EM + + ++ H G+L+L S + Sbjct: 416 -NSPFSPKDQVYLMLPEKGFN-NLNNKSKHATEMVERTIRPLCNRIHGGILILSNSLE-L 472 Query: 548 QRFLDYVTDLRLM---LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + L + +L QG L +L +K + S+L+G SF G + G+ Sbjct: 473 KDHLSIKMKSKFENRLVLTQGQMSNNSLTKLFKKE----KDSILIGSGSFKTGFSIPGEA 528 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L V + + F D P + + + SL L Q +GRLIRS + Sbjct: 529 LQAVVLSSLPFSVPDDPYIKLKIQTFAKRYHKSPNDISLQLMLKELEQSMGRLIRSIDDY 588 Query: 665 GEVVIYDKRLLTKNYGKRLLDAL 687 G +V+ D RL +K YGK++ + L Sbjct: 589 GVIVVTDSRLYSKPYGKKVRNWL 611 >UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI55_9BACT Length = 257 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 15/237 (6%) Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 +TSA+L +F ++ GL + R + +DSPF+ Q +++P EP ++ E Sbjct: 1 MTSASLAVDKNFDFQRKNIGLSDNERFRGLIVDSPFDFRTQSLLLVPSDMPEPGREDYED 60 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY-------VTDLRLMLLVQGDQPR 569 +A S + LVLF S ++ R + + + + L QG+ PR Sbjct: 61 SLAR----ILSDSISVTNGNALVLFTSYSSLNRVYEKTGKILERIGAVPVSLFKQGEMPR 116 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L+E + SVL SF EG+D+ GD L V I ++ F PV + E+ Sbjct: 117 SLLLE----KFKTLGNSVLFATDSFWEGVDIPGDSLRMVVICRLPFKVPTDPVTEAKIEY 172 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDA 686 ++ + F LP A Q GRLIR+ G V++ DKR+++K YGK +++ Sbjct: 173 MERQDIDSFREYILPHAVLRFKQGFGRLIRTKTDRGVVMVLDKRIVSKYYGKFFINS 229 >UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococcus infernus ME RepID=C5U5Q1_9EURY Length = 630 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 123/668 (18%), Positives = 242/668 (36%), Gaps = 92/668 (13%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 + ++ P R PQ++M+ + ++ +HL +EAPTGVGKTL+YL+P I A E+ K Sbjct: 7 VSKKFPYSTIREPQKKMMLSIYNSIINR--KHLIVEAPTGVGKTLAYLLPAIYFA-EQGK 63 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 +++ T + Q +I+ + L ++ +LK + G RN T + Sbjct: 64 RILILTETIDQQKRIFDE----LNRLNHNLKVSYLMG------IRNYTCKTLNRKANRIF 113 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 N++ C K + + + Sbjct: 114 CKINYRCRYRPNKKPICFCGMRKIKVGSLYY----------------------------- 144 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C C + + E + +VV N+ + + E ++++DE H L D Sbjct: 145 -CPLC-VCEYKKCKLESLVSNIVVMNNTMFFYSKEDCR-----DFDIIIVDEAHKLEDSI 197 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 R AL + RL+ F + ++ + L L + Sbjct: 198 RRALTIEINPDTLIERLKYMAFHYSPSVLRKRMTHDNVFDL------------LKNYLDG 245 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 ++ L + E + I KL ++ + E N+ ++ Sbjct: 246 VDIDLYRRALIYDDGELDSFYNLTKSILSSILNAYYKLIKLKEKILEFEENEEIKEEIKF 305 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 D+ ++++N + + R Sbjct: 306 DLDFKDICLVELNFINKVKSSDLLFNEFFENISKLRLSDNYVLYRSGNS------LIYEP 359 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + V++ L+ L ++ +I SAT+ SF +GL++ F+ L+SPF + Sbjct: 360 VFVNNYLKTLYGNAV--VIHCSATI---GSFKSHAHRTGLEDA---NFLRLESPFPMDRR 411 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV--- 554 +I+ + + +++ E A ++ + L+LF S ++ F +Y+ Sbjct: 412 -EIIALKDGANMKYEVKDR---EKANEIILKMLEAINDNTLILFKSFEDLENFYNYLKLR 467 Query: 555 ------TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 + ++ + +G + ++R E +L+ F+EG+D G+ L V Sbjct: 468 IDKLNLRNKKIHVYERGMSGEEA--KELQERFKK-EGGILLATGRFSEGVDFPGETLVGV 524 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRY-PFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 I + FP + +K + + F + S + L+Q +GRLIR+ +G V Sbjct: 525 IIDSLPFPVPTPLLKKEREILMKRVGSWEAFLLTSFDRMAKTLVQMIGRLIRTEKDYGVV 584 Query: 668 VIYDKRLL 675 VI DKR Sbjct: 585 VIQDKRFY 592 >UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF23_9LACT Length = 875 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 137/665 (20%), Positives = 244/665 (36%), Gaps = 70/665 (10%) Query: 29 APQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVAL 88 QR++I + +TL EE H IEAP G GKT +YL+ + A Q + + T+N+ L Sbjct: 253 DSQRKIIKKILETLEEEEPIH-FIEAPPGSGKTYAYLLAALEKAT-NQNPIWIVTSNLLL 310 Query: 89 QDQIYSK-DLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTP 147 Q Q+Y LP++ + + G+ Y+ DL AF Sbjct: 311 QQQLYEDSVLPIVSALKIKNPIVSIKGQRNYI----------------DLEAFSYKISQL 354 Query: 148 NNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPF 207 N + + + G W + D++ + + + S K C+ N + Sbjct: 355 KNDKSPRVSLSVMG---LVVWITETETGDLSECNQVLYQSSLWKDICVKENSKK-ESLYW 410 Query: 208 FVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI 267 A + +Q++ +VV NHA ++ + + P +++LDE +S + Sbjct: 411 TKAVQSVQKSNIVVTNHAFLIHYASTMSYQTKP---IVLLDEVQQFEHSLEQYGTVSIKF 467 Query: 268 TAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMP 327 + + QL ++ M F R +LYE N N Sbjct: 468 SNLFLLQQL--WSDYYLNSMTNFSKDEEHLSRTINRKLLEICDLYETWFEELNRGNYLKE 525 Query: 328 AGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLIL 387 + + + + + + +L L+ + SEKT + +L+ Sbjct: 526 SIVFTNEEWIETIHHEMIRAFTKSIIQLMNYLQ--------ENSEKTSLFE--NSIQLLQ 575 Query: 388 QMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERL 447 +M +L F+ + + + G + + H++ Sbjct: 576 EMKDSLLKFQESNHSYFVIERKDQYGQEM---IEVLRVDSVTHVF-------------NH 619 Query: 448 LWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV 507 ++I +I SAT+ +F+ L KA + +DS N I IP V Sbjct: 620 FKKTIKKLIGISATI---PTFTPLFYDL----KAQENLTIMDSKVN-SHAHHIFIPNDLV 671 Query: 508 EPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF----LDYVTDLRLMLLV 563 + + Q+ E A+ +Q+ + MLVL S A+ ++Y + LL Sbjct: 672 SVTAASSNQY-HEQIAYCIQQIYERNGGRMLVLMHSIEALMAVEELMVNYCKRNHIELLA 730 Query: 564 QGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 Q R ++ +R S+L+G+ SF EG D G ++ + I K+ FP + Sbjct: 731 QKGSQLGRKIQ---RRFQEKSDSILLGVYSFWEGFDSGGVSINSLVITKLPFPNPVTTHQ 787 Query: 624 ITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 +K NR F S+ L Q +GR R E+ I D R Y ++ Sbjct: 788 QIVQLEMKEQNRSYFAQYSIKMMLLQLYQGLGRFSRPTQKNAEIWILDVRASISKYSDKV 847 Query: 684 LDALP 688 + P Sbjct: 848 KNIFP 852 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 249/694 (35%), Gaps = 84/694 (12%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 + +++ Q+ + R Q ++ + + L E L IEA G GKT+SYL+ Sbjct: 229 EEDYRTYFERAISQL-GYTFREKQCELSEHIYRQL--REDSVLTIEADLGGGKTISYLLA 285 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + +K+L++ST+ + LQ+Q+ +DL ++ + + F R Y+ ++ Sbjct: 286 AVYYLSTYRKSLLISTSTIFLQNQLIDEDLRRIEHALKIKVPFQIIKSRRHYLSLEFVSF 345 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + + D+L L +L E GD+D +G R + Sbjct: 346 ILNDPKENHDIL-LLKMQLIVYMLEPH------GGDIDRLNLNGGRKIYFELMTSMF--- 395 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 + +Y + + + + NHA ++ + V ++ L+ Sbjct: 396 --------DSAQHQHYSY------QDSSETLHIGITNHAHLLN-RRKDNVFNHYEH--LI 438 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 +DE H L D A + + + + + K V + +LN Sbjct: 439 VDEAHQLLDYALNNSYDA--LNYQTIKYIIGQTIKSVPDNTSNTLDTLVDMDFEISQLNH 496 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 +++++ + + ++ +E + + L + + + + Sbjct: 497 KIDDMFDHLLENYSSKSVVKVKVEEND-----------------DIYILFKEIHSMMSVL 539 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 L+ + + + L R L + + +++ + Sbjct: 540 LSYEMDVSIRTKLETLQRYFLSVWIQIKVYKEL--------------------YIHMKNN 579 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + + I++++ L ++ + S T+++L+ E + D F Sbjct: 580 SKSGMSLISKSIKLNEILTNRIFDRFTSKVFVSGTMQTLS----FLEQF---HPSLDHFY 632 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 ++ F+ + + +P ++Q+I + +E+ +L+L S R Sbjct: 633 KYENTFSKYK-ATLFVPSDIQNYHYMKQDQYIESCLQYIHYYLENMS-SKVLILMNSYRQ 690 Query: 547 MQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 ++ Y+ +L L+ ++L ++ + + + Q+F EG+D K D Sbjct: 691 IEILRSYLVELYDPSLIITQTSDVNTLKL-NEQFNTLDNGIFLATQTFYEGVDFKYDGFK 749 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I + F D ++ + + F LP A L Q GRLIR+ G Sbjct: 750 TVMIISLPFMHPDDLNIMLMRDEVN----DVFMDYQLPGAVNKLHQATGRLIRNEQDKGM 805 Query: 667 VVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 ++ +D+RLL Y L F ++ + + Sbjct: 806 LICFDRRLLEGRYASYFSHILKSFDVKSGTIEDF 839 >UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=A8MJA6_ALKOO Length = 800 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 141/671 (21%), Positives = 232/671 (34%), Gaps = 110/671 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 Q P R QR++ V +T+ +E + L +APTG+GKT+S L P + Sbjct: 195 QFPFSNYRKGQRELAVAVYRTI--KEEKKLFAQAPTGIGKTISTLFPTV----------- 241 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 A+ + I SK L K I AF R + + R + T +D + F Sbjct: 242 -----KAIGEGITSKVFYLTAKTITRQVAEEAFSRMKSMGLR----FKTVTLTAKDKICF 292 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 ++ N EE C+ KG D K GL D +D R + + Sbjct: 293 --EKGKQCNPEE---CSFAKGHFDRVK-SGLADL--FQNEDSFTREI-------IEFYAQ 337 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP--DPKNLLLVLDEGHHLPDVAR 258 ++ CPF + A+ V+ ++ V + + ++DE H+L D +R Sbjct: 338 RHQICPFEFSLDIAIWADGVICDYNYVFDPRVYLKRFFADEKGDYTFLIDEAHNLVDRSR 397 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 SAEI + Q + + ++LNA E + Sbjct: 398 GMF--SAEINKKIFLEQKRVMKHQSQKVYKTL-----------DKLNAFMIEARKKCG-- 442 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 EH F + + +E EI LA + Sbjct: 443 --------------EHSFYIQK--EENTEIYHLLASFVR--------------------E 466 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L + QM+ + E + +A+ + + R+G + C + Sbjct: 467 TDELFKEGYQMDENKDLLELYFNAFAFLKIAEFYDERYRTYIEK--RQGDVFFKIFC--L 522 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L + + I SATL L +E+ G D + L SPF G Sbjct: 523 DPSYLLGEAI-KRGRTAIFFSATLTPL---PYFKEILG--GAEEDYAIRLGSPFESENLG 576 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL- 557 +V + N ++ +A K E K V F S + M+R LD + Sbjct: 577 LMV--ADYISTKYRNRDRSYIHIADVIAKVSEGKTG-NYFVFFPSYQYMRRVLDVFVEEY 633 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGER--SVLVGLQS--FAEGLDLKGDLLSQVHIHK 612 + +L Q E + + S+ G+ F+EG+DL G+ L V I Sbjct: 634 PHINVLQQQQTMTEEEREEFLNKFEDQPERTSIAFGVLGGIFSEGVDLVGERLIGVIIIG 693 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + P + V + E+ N +E + ++Q GR+IR+ G V + D Sbjct: 694 VGLPQLSLEVNL-IMEYFNQKNNKGYEYAYMFPGMNKVLQGAGRVIRTETDRGIVCLVDD 752 Query: 673 RLLTKNYGKRL 683 R + Y Sbjct: 753 RFTSYGYQALF 763 >UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BJL1_9LACT Length = 873 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 119/665 (17%), Positives = 246/665 (36%), Gaps = 64/665 (9%) Query: 26 IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTAN 85 + Q Q+I + + L + + +EA G+GKTL+YL+ + + + ++T+ Sbjct: 251 EYQPLQVQLIEFMLERLNFGDSINW-VEAEPGIGKTLAYLL-VSLQLQSQNHPIWIATST 308 Query: 86 VALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 + LQ Q+ +++ L++ + L G+ Y+ L + Q Sbjct: 309 ILLQQQLVDQEIKTLEESLGISLPIATVKGQEHYLSLSGLAEVLEKYEQYQ--------- 359 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 NQ+ L L L + + ++W +++ + + + Sbjct: 360 ----NQKSSLTVIGLLKWLAHTTSGDLSECNSLFYHREIWEKIT-------RKERQFSKM 408 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMS 264 + A R +++++V+ N A ++ ++ ++++DE L V + Sbjct: 409 DFYRRAIRHARKSKMVITNQAFLVQYLKQTPQRDHFDKPIVIIDEVQQLEHVLESQEQKL 468 Query: 265 AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNL 324 E A W ++Q++ + + +E + I RL C+ E Sbjct: 469 LEFDALW-QIQMEWNEYHLESYLEMSSTQEHQSRQINRRLLEICDLYEE----------- 516 Query: 325 YMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHR 384 +M ++ + ++ L E E L + +L K + + H Sbjct: 517 WMQMIRKESYPTSVILLSAEEWEKSIHHQTLAAVKSACIDLLKRTFDFKCNDELVQKTHA 576 Query: 385 LILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQL 444 + ++ + + + L Q G + ++GQ L ++ + ++ Sbjct: 577 CLQKLVQEMVLL-----------LKQEEGYVAVSYV---LKKGQYSLQLES--MKSALKM 620 Query: 445 ERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR 504 R ++ + I SAT+ F+ L + + L + + E + IP Sbjct: 621 WREIYGYMYQFIGISATIPI---FTPLFHSI----VKQEDGLFLPKTYQNFEHT-VFIPT 672 Query: 505 MRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR-LMLLV 563 PSI + + +A + +K LVL S ++ + + + LLV Sbjct: 673 DLPTPSIIVTPERVELLARQLLD-IYQRKQGRCLVLVHSIEMLEELEQVLLEHPDIPLLV 731 Query: 564 QGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 Q R V+ ++ E +L+G+ SF EG D + Q+ I K+ FP Sbjct: 732 QRTNQSSRKVQ---RKFQQQESVLLLGVYSFWEGFDSGEVSIDQLIIPKLPFPNPTQLQQ 788 Query: 624 ITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 E +K NR+ F+ +L Q +GR+ R H E+ I D R + Y R+ Sbjct: 789 RVIAEEMKLQNRHYFQDYALEKMLQQFYQGLGRMNRPHQEKAEIWILDTRSINSPYANRV 848 Query: 684 LDALP 688 + +P Sbjct: 849 MQCIP 853 >UniRef50_C8X8L4 Helicase c2 n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8L4_NAKMY Length = 778 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 148/732 (20%), Positives = 238/732 (32%), Gaps = 99/732 (13%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F PRA Q + V + E+ A+EAPTG GKTL+YL A + V+ST Sbjct: 23 FRPRAAQLDLSCRVLAAM--EQTGQCAVEAPTGTGKTLAYLASAALRAARCDERTVISTE 80 Query: 85 NVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCP----RNLTALAST----- 130 +++LQ QI KD P++ + + + G C R L AL Sbjct: 81 SLSLQQQIADKDAPVITEAVESVTGQSVSVAVYKGWQNTACAMSAVRVLQALLDDFHAPV 140 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDL----------------DTYKWDGLRDH 174 T+ LL D + + + G L R Sbjct: 141 PVTRDGLLDLADAAEEAVSGMPTRTRITVDGQLTDPRDALGPAAWALRASATVGPADRPS 200 Query: 175 TDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALV-MAAMES 233 I + W+ +S CL C C A++ A++VV NH L+ + A + Sbjct: 201 YPHPITERQWQSVSVSATDCLRNRCPLLEFCRPLAAKQRASTADLVVTNHTLLGIQAAKK 260 Query: 234 EAVLPDPKNL----LLVLDEGHHLPDVARDALEMSAEITAPWY---------RLQLDLFT 280 V+ ++L +V+DE H LPD R E + D Sbjct: 261 VPVVLSSRSLGRFHHIVVDEAHGLPDAVRKQGESTMSGRRLLNLVRDVEQGVDQWSDGSG 320 Query: 281 KLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE 340 KL + + + A+ RL+ + + P G A+ A Sbjct: 321 KLDSDTAVALKARLGGAGALASRLDVALTAAAGTAKEQVRLGDGVSPFGDAADDLVAFTT 380 Query: 341 LPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS 400 V+ + L +N LS + D V HR + R L E +S Sbjct: 381 GVGGVIRALGLPEDGDTDRQRLHLRLVNRLSAFRSAVDAVSTHR--TGVARWLEQQEDRS 438 Query: 401 KLWRLASLAQSSGAPVTKWAT---------REEREGQLHLWFHCVGIRVSDQLERLLWRS 451 + + + + W T ++ G + I S + Sbjct: 439 WVVKASPAQVADALRHQVWVTEPVDRADQLAQQNRGTVDFDPDPADISASTGAADVAGSR 498 Query: 452 IP---HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP----FNHCEQGKIVIPR 504 + + + SATL G+ + L SP F + +P Sbjct: 499 VVEPLSVCLVSATLPVG-----FAREVGVSARPA----VLKSPLLAAF---GASAVHVPT 546 Query: 505 ----MRVEPSID--------NEEQHIAEMAAFFRKQVESKKHLGMLVLFASG--RAMQRF 550 + N +H A + V++ ++++ + R Sbjct: 547 LTDTDLPALTERGPGGRVRLNTAEHPQWAARRITELVDANGGSALILVATARTGRLYADA 606 Query: 551 LDYVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 L R ++ Q D P L R+ +VLVG +SF GLD G + V Sbjct: 607 LRLAAKGRWRVMSQWDGRPAGATATLWRE----DHSAVLVGTRSFMTGLDAPGLTCTLVV 662 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEV---QSLPSASFNLIQQVGRLIRSHGCWGE 666 + +I +P+ E L++ ++ A+ Q VGRLIR G Sbjct: 663 LDRIPRA-PQNPLGQARVEQLEADGLNRWQADRRVYAGDAAVLTHQAVGRLIRRETDIGM 721 Query: 667 VVIYDKRLLTKN 678 V + D RLL Sbjct: 722 VAVLDPRLLKNK 733 >UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=Yersinia pestis RepID=C4HUU2_YERPE Length = 464 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 132/332 (39%), Gaps = 30/332 (9%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 A AL + I F PR QRQM A +++ + + + L +EA TG GKT +YL P Sbjct: 1 MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAI--DAKQQLVVEAGTGTGKTFAYLAP 58 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + +++ST + ALQDQ+YS+DLP++ + K GR Y+C L Sbjct: 59 AL----RADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQ 114 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + + L + + GD+ T +A D +W Sbjct: 115 QSLAGGD------LASETLVDLVRLRGWSAETVDGDISTCGQ--------VAEDSFVWPL 160 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNL 243 +++ +CL +C Y++C ARR +A+VVV NH L +A M ES P Sbjct: 161 VTSTNDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTAD 220 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 +++ DE H +PD+A QL K + + +R Sbjct: 221 VMIFDEAHQIPDIASQYFG------QQLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADR 274 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEHR 335 L ++ ++ NL Q R Sbjct: 275 LTQSTQDFRLVLGDPGYRGNLRDVMEQPTVQR 306 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 SF EG+D++GD LS V I K+ F D P++ E + PF LP A L Sbjct: 349 SSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLK 408 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEK 707 Q VGRLIR G +VI D RL+ + YG L++LP P + ++ + I K++ Sbjct: 409 QGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTR-DLAKAIAFLKQR 463 >UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=B8I7B6_CLOCE Length = 790 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 125/671 (18%), Positives = 219/671 (32%), Gaps = 108/671 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 Q P R QR++ V KT+ +G+ L +APTG+GKT+S L P + Sbjct: 186 QFPFKSYRRGQRELAVAVYKTIM--QGKKLFAQAPTGIGKTISTLFPAV----------- 232 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 AL +Q SK L K I AF + R + L F Sbjct: 233 -----KALGEQHISKIFYLTAKTITRQVAEEAFSKMR-----------------ECGLVF 270 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 LT ++ + D Y + +D+ + Sbjct: 271 RTITLTAKDKICFNKGGSCNPDFCEYAKGHYNRVNNAM--EDVLNTSQNLSREVIEEYAL 328 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAA--MESEAVLPDPKNLLLVLDEGHHLPDVAR 258 ++ CPF + A+ +V ++ L + + ++DE H+L D AR Sbjct: 329 KHKVCPFEFSLDLSLWADCIVCDYNYAFDPRVYLKRFFLNNTGDYAFLVDEAHNLVDRAR 388 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 + +A + + K I ++N++ L + A Sbjct: 389 EMFSAQIHKSAYL-------------EAKKLMKSKVPKVAKILNKINSYMVTLRKQCAEE 435 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 I++ L+ L L N +SE Sbjct: 436 GFIISKTE--------------------------------LKDLYRLLNNFISESEEW-- 461 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L + + E +A + + + ++ L+ + Sbjct: 462 --ILKNQNNNIEGFEQLLEVYFDSIAFTRMADFYDERYVTFIETKSMDVRVKLFC----L 515 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L + + + SATL +N ++ G D + L SPF+ + Sbjct: 516 DPSYLLSDAV-KRGKTAVFFSATLTPVN---YFMDILG--GDKEDYNINLASPFD--KDN 567 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL- 557 +I + + ++ ++ + SK+ +V F S + M T+ Sbjct: 568 LCLIVNDNISTRYKSRDKSYDKIVDIIWSSI-SKRTGNYVVFFPSYKYMNEVYTRFTEQY 626 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGERSVL--VGLQS--FAEGLDLKGDLLSQVHIHK 612 ++Q E R +G L G+ F+EG+DLKGD L I Sbjct: 627 PETNTIIQETSMTEEERESFLNRFQSGTEKSLVSFGVLGGIFSEGIDLKGDRLIGAIIVG 686 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + P + SP ++ K+ NR FE + ++Q GR+IRS G V++ D+ Sbjct: 687 VGLPQV-SPEQNIIMDYFKNKNRMGFENAYMYPGMNKVLQAAGRVIRSEHDVGTVILLDE 745 Query: 673 RLLTKNYGKRL 683 R NY + Sbjct: 746 RFSNGNYRRLF 756 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 251 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 129/685 (18%), Positives = 230/685 (33%), Gaps = 120/685 (17%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 + R Q +V L ++ I+APTG+GKT YL+P + ++ +++ +V+S Sbjct: 242 NLEVREEQESFAKEVG--LLLKDEPVSLIQAPTGIGKTYGYLLPAL--SQSKERQIVLSV 297 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 LQ+QI ++ LK++ + G Y+ L A + + F Sbjct: 298 PTKILQNQIMEEEGKRLKEVFHT-DIHSLKGPQNYL---KLDAFYHSLQENDENRLFRRF 353 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 ++ Q GDLD H + L+ + Sbjct: 354 KM----QVLVWLTETETGDLDEIGQLYRYQHFLADL----------RHNGNLSSQSLFVT 399 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEM 263 E + ++ + L + LV L D Sbjct: 400 EDFWKRSQERAETC------------------KLLVTNHAYLVT----RLED-------- 429 Query: 264 SAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILN 323 +F + + +++ E L + + +I++ Sbjct: 430 -----------------------NPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIID 466 Query: 324 LYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLH 383 L A E+R L E L E F + S K + LH Sbjct: 467 LIDKALVGEENRVQQRILESIRFECL-----------YLIEQFQSGKSRKNILDSLDNLH 515 Query: 384 RLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQ 443 + ++ E +L R + W E + + Sbjct: 516 QYFSELE-----VEGFDELVRYFTAEGD------YWLEVTETSQK---KIQISSTKSGRT 561 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ-GKIVI 502 L L ++ SATL S L ++ G E +FV ++S +Q ++V+ Sbjct: 562 LLSSLLPESCQVLGVSATLEISQRVS-LADLLGYPEA---KFVKIES---RGKQEQEVVM 614 Query: 503 PRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLL 562 + + + E + E+AA + ++ +LVLF + + D +T L Sbjct: 615 VKDFPLVTETSLEVYAREVAALLVEIQAFQQP--ILVLFTAKDMLLAVSDLLTVSHLAQY 672 Query: 563 VQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 GD V +KR GE+ +L+G SF EG+D + ++ F P+ Sbjct: 673 KNGD------VHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQNPQEPL 726 Query: 623 VITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR 682 + L + F LP A L Q +GR +R +I D+R++ K YGK+ Sbjct: 727 TKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIGKRYGKQ 786 Query: 683 LLDAL----PVFPIEQPEVPEGIVK 703 ++ +L V I + EV E I + Sbjct: 787 IVASLAEEATVKTISRSEVDEAIDR 811 >UniRef50_B5IHH7 DEAD_2 domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IHH7_9EURY Length = 619 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 113/659 (17%), Positives = 226/659 (34%), Gaps = 86/659 (13%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 + R Q+ ++ D+ + L E H+ EAPTG GKT++ L P + A + K ++ Sbjct: 5 YKYRKGQKDIVKDIEEVL--ENRMHMVFEAPTGSGKTIATLYPAVKYAIKNDKKVIYLVH 62 Query: 85 NVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 + + Q+ + L +++ A GR +CP + D LA L ++ Sbjct: 63 TNSQERQVIKEAKKL------EIRAIALQGRAN-LCPLARER-NELQHGSPDELALLCNK 114 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 L + +E + + D + + ++ + + + Sbjct: 115 LKKDVKEGNENACIYYANYLKNGNDIRKIIEENPTAEEFFEKAM------------NLKI 162 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLP----DPKNLLLVLDEGHHLPDVARDA 260 C + + + +A V+V + ++ +++L++DE H++PD AR+ Sbjct: 163 CAYEAIKDALPDATVIVFPYIYFFFPFIRRGIMDKIGVPMGDIILIVDEAHNIPDFAREL 222 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN 320 M + + + ++ P+ + +I + E +Y++ + + Sbjct: 223 KSMELSVNS---------LENMEKEALDYGNPQVL-GHSIADIAEFLKEAIYKMQKFVED 272 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 + E E +G ++ + + L EM+R ++ L H Sbjct: 273 EEGIIPHYAFEEEVSNVLGISINDFDTLAKDLIYYGEMVRE-NKVKHRKLPRSYMYHTGS 331 Query: 381 RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV-GIR 439 L+ WR A ++ + L L +C+ Sbjct: 332 FLY------------------FWR--------EAYSYEYIRLIKWGKTLSLEVYCLDPAT 365 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 V+D L + I S TL + + L + + SPF Sbjct: 366 VTDALLN-----VHSSIHLSGTLVPNE----YKNIVALPDNTITK--RYPSPFPKENLKI 414 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL 559 + + V ++++ +A K + + F S + + + + Sbjct: 415 LYV--DDVTTKYGEVDENLPRIAEHLTKII--SIGKNTAIFFPSYSLLSKIKELLDS--- 467 Query: 560 MLLVQGDQPRYRLVELHRKRVANGERSVL--VGLQSFAEGLDLKGDLLSQVHIHKIAFPP 617 +L + + + + S+L +G EGLD G LL V I I +P Sbjct: 468 KILSEERGMKTYSLFQMIENFKEKGGSILSVIG-GRIFEGLDFPGKLLEIVVIVGIPYPK 526 Query: 618 IDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLT 676 P V + S +E A + Q +GRLIRS G +I DKR + Sbjct: 527 PT-PKVKALQRYYDSKFGNGWEYAFRMPALIKMRQAIGRLIRSEEDRGIAIILDKRAAS 584 >UniRef50_UPI000186CB9B regulator of telomere elongation helicase 1 rtel1, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB9B Length = 1016 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 141/736 (19%), Positives = 278/736 (37%), Gaps = 96/736 (13%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P IP Q+ + V L +E H +E+PTG GKTL P A A+ ++K V Sbjct: 12 SFPYPIPYDIQKSYMNKVLTCL--DEKTHAVLESPTGTGKTLCLFAPVTAWAKRKKKNAV 69 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALAST--EPTQQDLL 138 V QD + P + + + R + +A T E + D+ Sbjct: 70 VHVT----QDSNKELNSPHFESTEHQGPWGVKSKSKVWYTARTHSQIAQTVSEVRKCDIE 125 Query: 139 AFLDDELTPNNQ--------EEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST- 189 + +Q EE+ K + K + +T ++ + D R + Sbjct: 126 GLHVRVMGARDQLCINELVLEEKDSYIKTVKCKELVKSKKCKYYTKLSYEKDFKRFYQSG 185 Query: 190 -----DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL 244 + + ++C CP+F+A+R + A++++ + ++ E+ +N + Sbjct: 186 EVLDIEDLVSIGKSCG---ICPYFLAKRASETADILLLPYNYIIDRESRESNGLQLQNDV 242 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 ++ DEGH++P ++ E S VA ++ + + + E L Sbjct: 243 IIFDEGHNVPSTCEESYEFSFTSLD-------------VAIGIKNIQDVMLSLSKLTEDL 289 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM-LRGLA 363 +E ++ ++N + + + Q+ E + +E+L + + L+ L Sbjct: 290 IE--DEEIDVSKHVSNSM-MMVEMLQKLESALSEMNASNELLPVSELYNFLSSAVLIDGI 346 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 F +D + + + + L+ +M M+ + + + + + +S +T T Sbjct: 347 SSFKSDSEKLSLTGSTLETFNLLEKMMSV--MYGSTVRSFDKSIVDRSFKCVIT---TDP 401 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR--------LQEMS 475 ER +C S ++ LL II+TS TL L +F E Sbjct: 402 ERHFAKKFSLYC--FNPSFGIKSLLALGSQSIIITSGTLSPLRTFIYELGLPKPVTLENK 459 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 + +K FV L + N+ + N+ ++++ + + S Sbjct: 460 HIAKKCQVPFVILGTGVNNVKMDGAY--------KNRNDPKYVSSLGMSLTNLIASIPD- 510 Query: 536 GMLVLFASGRAMQRFLDYVTD-----------LRLMLLVQGDQPRYRLVELHRKRVANGE 584 G+L+LF+S MQ + R+ + + +E +R+ + +G Sbjct: 511 GILLLFSSYTMMQSLKESWEKDLGIWTRLNSLKRVFVEPRNKNEFINCMENYRRAIDSGN 570 Query: 585 RSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV-- 640 ++L+G+ +EG+D K V I + FPPI VI + ++ +SL Y + Sbjct: 571 GAILMGVLRGKISEGMDFKDQYCRGVFIIGVPFPPIQDLRVIGKQKYSESLMIYNEKTKT 630 Query: 641 ----QSLPSASFNLI----QQVGRLIRSHGCWGEVVIYDKRL----LTKNYGKRLLDALP 688 + P S + Q +GR+IR +G +++ D R L N L D P Sbjct: 631 EEKLYNQPYLSIEAMKATNQAIGRVIRHGKDYGVIILVDYRFAWPRLFYNISSWLRDDFP 690 Query: 689 V---FPIEQPEVPEGI 701 FP + + + Sbjct: 691 TESNFPTAKKLISDFF 706 >UniRef50_Q5UF23 Predicted Rad3-related DNA helicases n=1 Tax=uncultured alpha proteobacterium EBAC2C11 RepID=Q5UF23_9PROT Length = 575 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 108/597 (18%), Positives = 185/597 (30%), Gaps = 98/597 (16%) Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 L+ + C++ C +Y C + R + A++V+ NHALVM V Sbjct: 3 LADRRGECIHAACPHYDRCFVEKSIRGAKRADIVITNHALVMVQAAYGNKDDRRTPTRYV 62 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 DEGHH+ D A A SA ++ + + R + +A Sbjct: 63 FDEGHHVFDAADSAF--SAYLSGRETAELRNWVRGAEDGRRGRARGLKRRIEDLVAGDDA 120 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGEL------------------------- 341 + E + + + A GE+ Sbjct: 121 ALAHIEEALEAARALPTQGWENRISAAQPLGAGEIFFMHLRSSLYLRASVPDSLYDLQCE 180 Query: 342 ----PDEVL----EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRAL 393 PDE+L E LA L L L L L + G D + R+ + Sbjct: 181 LYPAPDELLAAAREFANSLATLAAPLTRLVSCLLKFLDDHVGDIDSSQRARIEGAVRGLE 240 Query: 394 GMFEAQSKLWR--LASLAQSSGAPVTKWATREEREGQ-LHLWFHCVGIRVSDQLERLLWR 450 W+ LA +A + W + +GQ + + + + Sbjct: 241 LRAIGPLGAWQTMLADVAGGARDGFVDWMQIDRLDGQDRDVGLARHWLDPTIPFADNVLD 300 Query: 451 SIPHIIVTSATL------------RSLNSFSRL-----QEMSGLKEKAGDRFV------- 486 + + VTSATL + + + G G + Sbjct: 301 NAHGVTVTSATLQDYTNPKNARVKATRDDSDEFASTSLKSDIGKAPHDGWQSALALTGAA 360 Query: 487 ---------ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 + SPF++ Q +I++ + E + MAA G Sbjct: 361 HLDHAAMRASFSSPFDYGNQTRILVVNDL---DRNRPEATASAMAALMI-----AAGGGS 412 Query: 538 LVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 L LF + R ++ + L L Q ++ S L+G + Sbjct: 413 LGLFTAIRRLRAVYPALAAHLDIAGLPLYAQHIDKMN--LQTLLAMFREDPESCLLGTDA 470 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 +G+D+ G L + ++ +P + +W R + + L Q Sbjct: 471 VRDGIDVPGAALRLIVFDRMPWPR-SDILFSARAKW---QGRDTWTER---QTRLRLRQA 523 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTK 709 GRLIR G V+ D RL T+ L A P I++ + + I + +E K Sbjct: 524 FGRLIRRDDDRGVFVMLDSRLPTR-----LTSAFPADVDIQRVGLADAIGQTREFLK 575 >UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C6D1G2_PAESJ Length = 773 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 142/685 (20%), Positives = 243/685 (35%), Gaps = 122/685 (17%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P RA QR++ A +T+A +GR L +APTG+GKT+S L P + EE+ Sbjct: 185 AFPFSSYRAGQRKLAASAYQTIA--DGRKLFAKAPTGIGKTMSTLFPAVKAIGEER---- 238 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 L+++ Y+ R T A+ E + Sbjct: 239 -------------------LERLF-------------YLTARTTTRTAAEEALKMLGDGG 266 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTY--KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 L +E+ Y G D + AI D L S + + R Sbjct: 267 LHLHAVTLTAKEKVCLKDEVRCSPEYCEFAKGYYDRINGAILDMLGNEASMTREV-IERY 325 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD--PKNLLLVLDEGHHLPDV 256 Y + CPF + A+ V+ ++ + + L + + L++DE H+L D Sbjct: 326 AYKHHVCPFEFSLDAAYAADAVICDYNYIFDPRVNLKRLFEEQKRKTALLVDEAHNLVDR 385 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 AR+ SAE+ + +E R + + A + L Sbjct: 386 AREMY--SAELRKADF--------------LELQRASKTIRPLVYQSAKAVNQYFIALRK 429 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 S+ +G+EA LP++++E + L + E G Sbjct: 430 SIE-------ESGKEATGTNMERYLPEQLIEQLETLVQAAEEQLA------------QGD 470 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 D + L ++ R+A L +A +E + ++ L+ Sbjct: 471 QDPL-----------LLDVYFGCQHFLRIAKLYDER---YVTYAEKERNDVRMKLFC--- 513 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + S L + + I+ SATL L+ +M G + D VA+ SPF+ E Sbjct: 514 -LDPSYLLRQ-YAKGYKAQILFSATLSPLH---YFMDMLG-GDAETDYAVAIPSPFS-SE 566 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 Q + I ++ + E+ + +A R VE + +LV F S + + + Sbjct: 567 QLDVRIEKL--STRYQDRERTMDRVAGLLRSTVE-RHQGNILVFFPSYAYLNGVYERFME 623 Query: 557 LRL--------MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS----FAEGLDLKGDL 604 L L +VQ + A + LVG F+EG+DL GD Sbjct: 624 LPLSEEESATFTAMVQRPNMPEEERDAFLAAFAPDNNNTLVGFAVMGGIFSEGIDLVGDR 683 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L+ V + + P + I + ++ + FE + ++Q GRLIRS Sbjct: 684 LTGVAVVGVGLPQVGLERNIIK-DYFDRQGKNGFEYAYVFPGMNKVLQAGGRLIRSESDR 742 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPV 689 G +++ D R Y + LP Sbjct: 743 GMLLLIDDRYAHPQYARL----LPP 763 >UniRef50_Q6MR44 Similar to ATP dependent helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MR44_BDEBA Length = 792 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 124/688 (18%), Positives = 247/688 (35%), Gaps = 110/688 (15%) Query: 7 LKAQIAAWYKALQE--QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 +K ++ + + E P PR QR++I + +A E L ++APTG+GKT+ Sbjct: 171 VKEKLFKARQKMAEEMSFPFATPRPGQRELIEGIEAQVADEHP--LLVQAPTGLGKTVGV 228 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNL 124 L P + + + V T Q + + + L++ ++ + + +C + Sbjct: 229 LYPNLKDSLSRGQKTVYVTP-KNSQHIVAEEAVEKLQEQGSKIRSLTLTAKSK-MCLK-- 284 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + C + + L +H D+ Sbjct: 285 ---------------------------AETLCNPGYCEFARDYYTKLAEH-DLVNKLSKK 316 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP---- 240 R+L+ +K + + + CPF ++ I+ A+VV+ ++ A L +P Sbjct: 317 RKLTQEKLVEMGKE---FEVCPFELSVEAIERADVVIGDYNYAFAPRSLLGRLSEPLLEA 373 Query: 241 -KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 + LV+DE H+LP A+D S + +LD+ F + + Sbjct: 374 GEKPNLVIDEAHNLPSRAQDYFSPSLSV------QELDILEGDFTKLPPTFSLQAGSLIR 427 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + L G++ R ++ + + + Sbjct: 428 KAKSL--------------------IQEYGEDGGSRKVDIDI--------EPFLEHERSI 459 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 R L +L+ +E ++RL L + AL + G + Sbjct: 460 RALTTEYLDSDTEIITRDPMLRLMNLWSEFIAAL----------------EYRGPE--FF 501 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 T + L C S+QL ++ ++ +++ SATL+ F+ QE+ G + Sbjct: 502 TTYQNSRFTEMLKVTC--CDASEQL-KIAYKQFKNVVAFSATLKP---FTYYQELLGF-D 554 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + + SPF + ++IP++ + ++ + A +V K + Sbjct: 555 LEKSKTLEFQSPFKPENRQLMIIPQIS---TKLSDRVVSSGKVAEVISRVTRVKAGNYIA 611 Query: 540 LFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLV-GLQS--FAE 596 LF S + + + L +L Q + V+++ + + +L+ G+Q F+E Sbjct: 612 LFPSFEFLAQVEKQLQVPHLRVLRQERDMKQLDVQIYLEELKAANEPILLLGVQGGVFSE 671 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR-YPFEVQSLPSASFNLIQQVG 655 G+D GD+L + A P D + + F + A IQ G Sbjct: 672 GVDFPGDMLIGAFVIGPALPSFDFEREQIRTYFDGRYGKENGFNYTYVYPAMAKAIQSAG 731 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 R+IRS G +++ D R L Y + + Sbjct: 732 RVIRSETDKGVIILMDSRFLNPVYAEAM 759 >UniRef50_A0AE01 Putative DEAD/DEAH box helicase n=1 Tax=Streptomyces ambofaciens ATCC 23877 RepID=A0AE01_STRAM Length = 1992 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 141/764 (18%), Positives = 249/764 (32%), Gaps = 76/764 (9%) Query: 17 ALQEQIPDF--IPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI-AR 73 AL + + PR Q+ M + + G +EAPTG GK+ + L + A Sbjct: 372 ALAQVVHGSRVEPRPAQQTMTTTLHD--WTDRGVSGLLEAPTGTGKSYAVLAAALDWLAG 429 Query: 74 EEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL--KFTAAFGRGRYVCPRNLTALASTE 131 + +T V++T LQ Q +KD+ L++ +P + G+ + LT + Sbjct: 430 GDSRTAVIATYTKQLQSQ-MAKDIQDLERALPGILGVADLVKGKSNRLSLAALTKTLAEA 488 Query: 132 PTQQ----DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG-LRDHTDIAI------- 179 P ++ A L W D D+ Sbjct: 489 PRRRRSAGTARARFSQRSRFRELAVFLALRLLAAKEPPQSWTARSVDPVDLPAFFTDYIG 548 Query: 180 -DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP 238 LW + + R I +++ANHALV++ + + + Sbjct: 549 RGLPLWLESLSQRDGDYGPAAGNPLTVHTDTVRESIDSHRLILANHALVLSHL--DDLRA 606 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSA-----EITAPWYRLQLDLFTKLVATCMEQFRPK 293 +LLV+DE H L + A AL ++ E P Y+ + A Sbjct: 607 VGPEVLLVIDEAHELENAATSALTVTVDHQDLEALLPEYQAWIADAHPGTAKEQAAAAIA 666 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 + L ERL + ++ A + +A + L Sbjct: 667 DLERLLDDERLPRLAAQAFD--AQAKGVGVRIGSRATTLASPYAGTSGTRHTRRLSLVLE 724 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGM--------FEAQSKLWRL 405 + + L + + D + RL + + ++ L Sbjct: 725 SIAKALLSCRITLERYVVQHAAGIDPLVRERLTALAEHTDSLTTALDRITADIRAFLDPA 784 Query: 406 ASLAQSSGAPVTKWATREEREGQLH---LWFHCVGIRVSDQLE-RLLWRSIPHIIVTSAT 461 +L Q+ + V +E + +L + + E R S + SAT Sbjct: 785 LTLDQAPPSRVIHLEELDEPKAELRSYCFRVATSPVDLPAAPEWRRYLESFDRVHYVSAT 844 Query: 462 LRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNE---EQHI 518 LR + ++ GL + +AL SPF Q ++V + E Sbjct: 845 LRVAGEWDFMRTRLGLPDDLP--TLALPSPFALRSQAEVVCFSDFPSWAEQEEGALRTVA 902 Query: 519 AEMAAFFRKQVESKKHLGML-----VLFASGRAMQRFLDYV------TDLRLMLLVQGDQ 567 ++A F + + +L + ++ L ++ Sbjct: 903 HQVAGFATEMTRVRADGNGFDGGGAILTTARSTAAGIGFHLVRELRSRTLDPPVVEALTL 962 Query: 568 PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG-DLLSQVHIHKIAFPPIDSPVVITE 626 R + R G LVG + +G+D+ + L V I+K+ F P +P+V Sbjct: 963 GNGRAYQAFTDRRDGG--GFLVGTKGLWQGVDVSDAERLRLVWINKLPFAPFAAPIVEAR 1020 Query: 627 GEWLKSL---------NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL--- 674 + E LP A+ L Q VGRLIRS G VVI D++L Sbjct: 1021 RAAVAERAEQAGHPDPEGAATEHYYLPLAALQLRQAVGRLIRSDRHRGVVVISDRKLAGA 1080 Query: 675 --LTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 L ++Y + L +L +++P+ G + RR Sbjct: 1081 SSLRRSYRRAFLGSL-DDGLQRPDPETGDIGGGNVATMAEGWRR 1123 >UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9XAU8_9BACT Length = 824 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 131/678 (19%), Positives = 231/678 (34%), Gaps = 88/678 (12%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI-AIAREEQKTL 79 P R QR++ K +A G L IEAPTG+GKT+S + P I A+A + + + Sbjct: 193 AFPFSNYRTGQREIAVAAYKIMAR--GGRLFIEAPTGIGKTISVIFPAIKAMAERKLERI 250 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 TA + + K L+ L+ R + +C R Sbjct: 251 FYLTA-RTIGRAVAEKAFADLRGKGLQLRVVTLTAREK-LCIR----------------- 291 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 E C +G D YK I+ + ++ Sbjct: 292 -------DGKACELSTCPLAQGYYDRYKPAMREALGRQEINRRVLEEVA----------- 333 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAA--MESEAVLPDPKNLLLVLDEGHHLPDVA 257 ++ CPF ++ + ++ ++ V + + ++DE H+L D A Sbjct: 334 QRHQVCPFELSLDISSWVDGIICDYNYVFDPKVYLRRHFADEAGDFAFLVDEAHNLVDRA 393 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR------PKTIPPLAIPERLNAHCEEL 311 R+ SA+I + V C + K I + +A + Sbjct: 394 REMF--SADINTRELVEVKQAIKREVPGCAKAITRLNVGIKKLIGKVGAEAESSADFPDE 451 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 +L ++ +P+ A G++ E L L E + AE +L Sbjct: 452 MDLFSAGAVTKTKNIPSATTRTLPQARGDM-GIFKEFPSSLTMLVEDVLETAETWLTRNE 510 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 D+++L+ +RL S +++ ++ T E + + Sbjct: 511 AAEFRDDLLQLY-------------------FRLLSFRRTAELYDERYVTLVEAAESVRV 551 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 C + S L++ L + SATL +N +E+ G D + L+SP Sbjct: 552 RLFC--LDPSFLLQQAL-SRGKAAVFFSATLTPIN---YYRELLG--GNQEDPVLQLNSP 603 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F+ +V R+R + Q ++E+ V+ + LV F S + L Sbjct: 604 FDSEHLALLVHGRIRTDFKA--RRQTLSEVVHAIATLVQERSG-NYLVYFPSFLYLNAVL 660 Query: 552 DYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS----FAEGLDLKGDLL 605 + L + +L Q E + LVG F EG+DL GD L Sbjct: 661 ELFQSLYPTVPVLTQRPGMAESERETFLAAFSVEHGQTLVGFAVLGGIFGEGIDLVGDRL 720 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 I + P + + + ++ + F+ ++Q GR+IRS G Sbjct: 721 IGAVIIGVGLPQLCAERDLIR-DYFQEKTGAGFDYAYTFPGMNRVLQATGRVIRSETDRG 779 Query: 666 EVVIYDKRLLTKNYGKRL 683 V++ D R Y K Sbjct: 780 IVLLIDSRFDEWRYRKLF 797 >UniRef50_A0CAB5 Chromosome undetermined scaffold_161, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CAB5_PARTE Length = 722 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 130/699 (18%), Positives = 260/699 (37%), Gaps = 72/699 (10%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT---LSYLIPGIAIA 72 L+ P Q + + + +TL +E H +E PTG GKT L+ +I +A Sbjct: 6 DDLEVIFPYKFLYKEQLEYMQALKQTL--DEKGHGILEMPTGTGKTVSLLALIIAYLAQR 63 Query: 73 REEQKTLVVSTANVALQDQIYSKDLPLLKK-----IIPDLKFTAAFGRGRYVCPRNLTAL 127 K L+ T V ++ + +LK + + R +C Sbjct: 64 PNTVKKLIYCTRTVVEMEKTLEEVRLVLKARKAEGLNDNFTAVGLSSRKN-LCIN----- 117 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDL-DTYKWDGLRDHTDIAIDDDLWRR 186 P + +D E E KR D Y+ G ++ D Sbjct: 118 ----PDVINQKDRVDAECRKRTAEWVKRGQNETCIFYDNYEKSGKETIANLPHDVY---- 169 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD-PKNLLL 245 + L +N Y +CP+F AR +++A +VV N+ ++ S + D K ++ Sbjct: 170 ----SLNDLRKNGAYSIQCPYFTAREMVKKANIVVYNYLYLIDPTVSSQLTKDQIKESVV 225 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 V DE H++ DV +A + RL + + + I RLN Sbjct: 226 VFDEAHNIDDVCIEAYTV---------RLNKPILAEAINNLKVVETQIQSETNEIQNRLN 276 Query: 306 AHCEELYELIAS-LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 ++L + + LN + GQ + R + + + + ++L +E L+ Sbjct: 277 EEYKKLIKNLEKKPEGELNQLVIPGQIRKARNFIDFMKRVINSLRKKLKDNSEALKTSHA 336 Query: 365 LFLN-----DLSEKTGSHDIVRLHRLILQMNRALGMFE-AQSKLWRLASLAQSSGAPVTK 418 + N + +K G+ DI L + ++N L + A++ +R S + + Sbjct: 337 ILHNTKGFTEEIQKEGNLDIDSLKQCGERLNLLLNTLQIAETDKFRPLSSVAQFVMYLVQ 396 Query: 419 WAT-------REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 + EG L+ + S + ++ +I+TS T+ + + ++ Sbjct: 397 YQEGFKVIFQSNNYEGTLNEKLMTLACFDSSLAMKNIFAQFQSVILTSGTMSPIEIYPKI 456 Query: 472 QEMSGLKEKAGDRFVALDSP----FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 + + K+ D + +S E G + E ++ N E F + Sbjct: 457 LDFKPVVAKSIDIELTRNSIQPIIVTMSEDG----TELTSEFTLRNNEDVSRNYGNFLLE 512 Query: 528 QVESKKHLGMLVLFASGRAMQRFL---DYVTDLRLMLLVQGD-QPRYRLVELHRKRVANG 583 E+ G++V S M+ + + + +++ + D + ++ +RK G Sbjct: 513 LSENVPD-GLIVFMPSYSRMEEWASIWNKFSKNKVLFIESKDVAETSQKLQQYRKCCDVG 571 Query: 584 ERSVLVGLQ--SFAEGLDLKGDLLSQVHIHKIAFPPID--SPVVITEGEWLKSLNRYPFE 639 + L + AEG+D +G V + I FP ++ +++ ++L+ + Sbjct: 572 RGAALFSIARGKIAEGIDFEGHYGRCVAV--IGFPALNSKDTLILERCKFLEEKFKITKN 629 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 A Q +GR++R +G +++ DKR K+ Sbjct: 630 DFIEFDAMRQTCQCLGRVLRGKQDYGIMIMADKRFAQKS 668 >UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lactobacillus RepID=Q1WV23_LACS1 Length = 788 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 123/676 (18%), Positives = 227/676 (33%), Gaps = 114/676 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI-AIAREEQKTL 79 P R Q + A V KT+A + L +EAPTG GKT+S + P + A+ ++ + + Sbjct: 184 DFPFSSYRKNQHEFAAAVYKTIALN--KKLLVEAPTGTGKTISTIFPAVKALGTKKCQKI 241 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 TA ++ + L LL K + + + T + L Sbjct: 242 FYLTA-KQSTRKVAEETLQLLVKHGLSITAITLTSK--------------EQITFPEELD 286 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 DDE + G D A+ D L + + Sbjct: 287 LADDENP--------------------YYLGYYDRLRPALIDILTNEKVITRKI-VENYA 325 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL--LLVLDEGHHLPDVA 257 + PF + +VV+ ++ + + +N +LDE H+L + Sbjct: 326 KKHMLDPFEFSLDISNSCDVVICDYNYLFDPLVKLQRFFTERNYDYTFLLDEAHNLVSRS 385 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 RD ++ + +++ + PP I ++LN + + Sbjct: 386 RDMYTKEIS-------------SQQIKDLLDKLQTLPHPPQKIVDKLNTLLNDFDLIKEP 432 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 L N D ++E ++LA LT+ + + + L+E Sbjct: 433 LVNYQQA------------------DVIIE--EKLASLTKKIMYFCDFTTDWLAENPHFS 472 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 L + + + + +R + + + Sbjct: 473 LKDDLLEFFFAAYAFVKISDYYNNSFRTHLFITENSELLIRVFC---------------- 516 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + S+ + L ++ SATL LN QEM GL + + L SPF+ Sbjct: 517 LDFSELIANSL-NLGGSAVLFSATLSPLN---YYQEMFGLIDNSL--LYQLSSPFDESNL 570 Query: 498 GKI---VIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV 554 + IP + +Q + ++ + +K+ L+ S +++ + Sbjct: 571 NLLITSYIP-----VTYQQRQQSLGKIIDAIHTMIATKQG-NYLIFLPSYTFLKQVVVAF 624 Query: 555 TDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ----SFAEGLDLKGDLLSQV 608 + ++Q + E +LVG SF+EG+DLKG+ LS V Sbjct: 625 NQAYPHIDTVIQENDMTREQQEDFLNYFVENPTKILVGFAVLGGSFSEGIDLKGNRLSGV 684 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV-QSLPSASFNLIQQVGRLIRSHGCWGEV 667 I + P + + + + + F+ LP N+ Q GR+IRS G V Sbjct: 685 AIVSVGLPKLSKETNELQS-YFNNKQKDGFQYAYQLP-GLNNIFQAAGRVIRSSTDVGVV 742 Query: 668 VIYDKRLLTKNYGKRL 683 ++ D R T Y K Sbjct: 743 LLIDNRFATSRYAKFF 758 >UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales RepID=A1AQ39_PELPD Length = 807 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 129/672 (19%), Positives = 237/672 (35%), Gaps = 105/672 (15%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 P PR+ Q ++ + + + EGR + ++A TG+GKT+ L P + A + +V Sbjct: 189 FPFATPRSGQVDLMRTIQEGMG--EGRAMLLQAATGLGKTVGVLFPVLKEAFSRGQRVVY 246 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 T Q + + ++ ++ S T + + F Sbjct: 247 VTP-KNSQHAVAEDAVDRFQQAGSKIR--------------------SLTITAKGKICFK 285 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 D+ L E R + DI RRL + L Sbjct: 286 DEPLCDPGYCEYAR-----------DYYEKLHENDILAILARKRRLKSRTFRQLGEQ--- 331 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK-----NLLLVLDEGHHLPDV 256 Y+ CPF + +EA++V+ ++ V A + + D LV+DE H+LP Sbjct: 332 YQVCPFELQLDASREADLVICDYNYVFAPRSALGRMTDMSIDQEGKPSLVIDEAHNLPGR 391 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 A + + L++ + F + + L + +A Sbjct: 392 AMEY------YSPVLSSQHLEMLRHAMGDIHPPFNKE-------------AQQLLDDCLA 432 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 +L + A G P + + + E LR L +L+ +E G Sbjct: 433 TLTSCGG-------------AGGSRPLRITPPLEPFLEQDERLRALLNRYLDSGAE-MGR 478 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 D + LG+ + S+ RL A + + T + C Sbjct: 479 QDPI------------LGLCFSWSEFTRLLEYA-ADPERQEFFTTWHPHGSGGAVKITC- 524 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 S+ L+ + ++ SATL+ F +SGL + R SPF Sbjct: 525 -CDASEMLKE-CYADYGQVVAFSATLKP---FDYYARLSGL-DPESVRTAEFPSPFPPEL 578 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 + ++IP+ V E + ++A R+ + + LV S ++R L+ Sbjct: 579 RKLLLIPQ--VSTRYSRREANYGKIADAVRR-IAGGRRGNYLVFLPSFPFLERVLELFRP 635 Query: 557 -LRLMLLVQGDQPRYRLVELHRKRVANGE-RSVLVGL--QSFAEGLDLKGDLLSQVHIHK 612 ++L Q + R VE +R+ G ++L + SF+EG+D G+++ + Sbjct: 636 PEGFVVLRQERDMKARQVEEVLERLRAGNSPTILFAVQGGSFSEGVDYAGEMVIGAFVVG 695 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPF-EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 P D E+ + F ++P+ + +Q GR+IRS G +V+ D Sbjct: 696 PPLPNYDFQREQMR-EYYQKRYGAGFPYAYTIPAMA-RAVQAAGRVIRSETDRGLIVLMD 753 Query: 672 KRLLTKNYGKRL 683 R + Y + Sbjct: 754 DRFMDPEYSSAM 765 >UniRef50_B8FYP7 DEAD_2 domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FYP7_DESHD Length = 774 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 121/675 (17%), Positives = 226/675 (33%), Gaps = 126/675 (18%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE-QKTLV 80 P R QR+++ V KT+ +E L ++APTG+GKTL + P + E + + Sbjct: 186 FPYPAYRKGQRELVVAVYKTI--KEKHKLYVQAPTGIGKTLGTIFPALKCLLEGLETPIF 243 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 TA + + L +L++ LK T +D + F Sbjct: 244 YLTA-KTITRTVAEGSLLMLQQQGLSLKRVTL--------------------TAKDKVCF 282 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL----WRRLSTDKASCLN 196 + D G D A++D W R + +C Sbjct: 283 CPECECTPE--------------DCSYAKGYYDRLGPALEDIFERDHWNREQIE--NCAR 326 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAA-MESEAVLPDPKNLLLVLDEGHHLPD 255 + CPF + A++V+ ++ V + + + + ++DE H+L + Sbjct: 327 N----HGVCPFEFSLELTNWADLVICDYNYVFDPRVFLKRFFLEGGDYAFLIDEAHNLVE 382 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER-LNAHCEELYEL 314 AR+ SA++ + +L ++ + L + ++ L + L Sbjct: 383 RAREMF--SAQLNKEEFLHLKNLVEDQEPVLGKRLQTVNKNFLKLKKQGLEVEKDAPTAL 440 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 +SL ++N EAE F E P Sbjct: 441 YSSLERVVN-------EAEKFFKKEETPP------------------------------- 462 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFH 434 + E + A+S + E++ ++ L+ Sbjct: 463 ----------------WKEKLTELYFNIQAFLHTAESYDEHYLTYYQYPEQDVRVKLFC- 505 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNH 494 + S QL ++L + SATL L ++ G + + L SPF H Sbjct: 506 ---VDPSQQLAQVL-NKGRAAVFFSATLSPLE---YFIQVLG--GEKESYKLQLPSPFPH 556 Query: 495 CEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV 554 ++ + ++ + + + + V+ K LV F S ++R + + Sbjct: 557 ENLCLML--QKQISTKYNQRSLSLDPIVEGITQLVQGKTG-NYLVYFPSYEYLERVRERL 613 Query: 555 TDLR--LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS----FAEGLDLKGDLLSQV 608 +L Q E + R LVGL F EG+DL G+ LS Sbjct: 614 LQAHPEFKVLTQTMGMTEADREEFLEAFQEEPRESLVGLALLGGIFGEGIDLTGERLSGA 673 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I + P I + I + + + FE + ++Q GR+IR+ G ++ Sbjct: 674 VIIGVGLPQIGTERDIIRAHFQERYGQ-GFEFAYMYPGMNKVLQACGRVIRTEQDRGAIL 732 Query: 669 IYDKRLLTKNYGKRL 683 + D+R +Y + Sbjct: 733 LIDERFARLSYRRLF 747 >UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBF9_9GAMM Length = 804 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 126/682 (18%), Positives = 228/682 (33%), Gaps = 112/682 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI-AIAREEQKTL 79 P R QR + +A L ++APTG+GKT+ L P I AIA + + Sbjct: 193 AFPYGEFRDGQRSFSVSSYRAMAS--AGQLFVQAPTGIGKTIGSLFPAIKAIAEGHHEKV 250 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 TA + K L +++ LK + + +C Sbjct: 251 FFLTA-KTSGRAVAEKSLADMQEKGLLLKTVTLTAKEK-ICFN----------------- 291 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 +P + E + L++ L DD ++ + Sbjct: 292 ----PGSPCDPEHCEYAVGYYDKLNSVIESSLEATNYFKRDD--IEHIARENTM------ 339 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP---KNLLLVLDEGHHLPDV 256 CPF ++ ++ +VV+ ++ V + L D ++ LV DE H+L D Sbjct: 340 -----CPFELSLDLLEWVDVVICDYNYVFDPVVYLRRLFDDPLVEHCFLV-DEAHNLVDR 393 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 RD E +L++ + R ++ + +++ + Sbjct: 394 GRDMFSAQIEKD------------RLLSVKRQVKRSSSVEVGGVLRKIDGINRAFLSIRK 441 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 ++ L +H F++ + P V L LR E Sbjct: 442 EHSHSLE---------QHGFSVVDEPPTV---------LISKLRSFCEHL---------Q 474 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 H + R + L ++ + R A + K +++ L + +C Sbjct: 475 HWLAEHERDGRDYDLLLDLYFDALRFTRTADYFDDHYVCLIK----TDKKKLLSINLYC- 529 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + S L + L + SATL +N Q++ G+ +FV L SPF H Sbjct: 530 -VDPSRLLGKGL-ERSKSSLFFSATLAPIN---YYQQLLGVS--PTSQFVDLPSPFPHEN 582 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 QG + + + + E ++A + +ES + +V F S + M++ D Sbjct: 583 QG-VFVVKDIA-TNFKQREGSYNKIAVLIQTMIESHRG-NYIVYFPSYQYMEKVYDVFGQ 639 Query: 557 LR--LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS----FAEGLDLKGDLLSQVHI 610 +++Q Q + R LVG F EG+DLKG L V I Sbjct: 640 QNSATDIIIQQRQMNEESRQCFLNRFDAAYEHDLVGFAVMGGIFGEGIDLKGLRLIGVII 699 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRY---------PFEVQSLPSASFNLIQQVGRLIRSH 661 + P + + + + + F ++Q GR+IRS Sbjct: 700 IGVGLPQMGIERDLIKQHFRDTRVDDVVDQHRTNEGFNYAYQYPGMNRVLQTAGRVIRSE 759 Query: 662 GCWGEVVIYDKRLLTKNYGKRL 683 G V + D+R + Y + Sbjct: 760 QDRGIVCLVDERFASARYRQLF 781 >UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4L4_9FIRM Length = 834 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 123/676 (18%), Positives = 213/676 (31%), Gaps = 67/676 (9%) Query: 21 QIPDFIPRAPQRQMIADVAKTLA-----GEEGRHLAIEAPTGVGKTLSYLIPGI-AIARE 74 Q P R QR + +V + A + G L +APTG+GKT+S L P + A+ Sbjct: 185 QFPFPAYRPGQRALAGEVYRACAAGKAEQKGGTRLFCQAPTGIGKTMSALFPALKAMGEG 244 Query: 75 EQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 + + + TA Q L L+ P + R++T A + Sbjct: 245 KGEKIFYLTARNTTQAA-AEDALARLRAADPA------------LSLRSVTLSAKEKACL 291 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 D E P E A +G + A+ D L + D+A+ Sbjct: 292 CK-----DAEGRPACLPEACPYA-----------NGYYERLKDALADLLDSAVPYDRAA- 334 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA-MESEAVLPDPKNLLLVLDEGHHL 253 L +R CPF + + +VV+ ++ + + + + ++DE H+L Sbjct: 335 LTETARRHRVCPFELGLDLSEWCDVVIGDYNYLFDPTVHLRRFFDAAGDYIFLIDEAHNL 394 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 PD AR SA K + L + Sbjct: 395 PDRARAMY--SARFCKSSLTDARRAIGKGKSALKTALTKADRGFLEARRAVTKLAPRRGP 452 Query: 314 LIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEK 373 + + E A LP+ +L T L+ L + L L Sbjct: 453 APTESPAEDLTQQTSLLDTEPAEAAFPLPEPLLA-----QDGTVFLQELPKELLRLLF-- 505 Query: 374 TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWF 433 + + + + + E + + A+ A T R +L Sbjct: 506 SLQAPLQDWLEANPEADAHAQLLELYFAVQDITRAAERYDAHFVTQLT--ARGSELEWEL 563 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFN 493 C + + ++ L + SATL + + G R VAL+SPF Sbjct: 564 LC--LDPAPFVDASLAAGRAAALF-SATLTPPG---YYRSVLG---CPDARAVALESPFP 614 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 G +P + + E + ++ +K L F S +++ + Sbjct: 615 PEHLGLYCLP--GISTRYRDREASVQAVSDALAALARAKVG-NYLAFFPSYAYLRQVHED 671 Query: 554 VTDLRLML--LVQGDQPRYRLVELHRKRVANGERSVLVGLQS----FAEGLDLKGDLLSQ 607 T + L Q ++ L+G F EG+DL GD L Sbjct: 672 FTARYPDIGTLAQESGLDDAARAAFLEQFGPSPAKTLLGFGVMGGIFGEGVDLVGDRLIG 731 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 I + P ++ P + F+ ++Q GR+IR+ G V Sbjct: 732 CAIVGVGLPQVN-PRQEILRRYYDEAGGTGFDYAYRFPGMNKVLQAAGRVIRTQEDRGVV 790 Query: 668 VIYDKRLLTKNYGKRL 683 ++ D R Y + Sbjct: 791 LLLDDRFARGEYTRLF 806 >UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit n=37 Tax=Bacilli RepID=C0X4L0_ENTFA Length = 820 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 113/674 (16%), Positives = 215/674 (31%), Gaps = 112/674 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI-AIAREEQKTL 79 P R QR++ V KT+ ++ L +EAPTG GKT+S L P + AI EE + + Sbjct: 213 SFPYGEYRKGQRELAVAVYKTILSKQR--LFVEAPTGTGKTMSTLFPAMKAIGEEEGERI 270 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 TA + Q+ + L + S T +D + Sbjct: 271 FYLTA-KTITRQVAEDAVKALSE--------------------KQAQTKSITLTAKDKIC 309 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 FL + E L+ WD L+ + + R Sbjct: 310 FLTERNCT--PEHCPFADGYYDRLNEGLWDLLQHENHL-------------TREVIERYA 354 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD----PKNLLLVLDEGHHLPD 255 ++ CPF ++ ++++ ++ + + + + ++DE H+L + Sbjct: 355 QKHQLCPFELSLDASLWCDLIIGDYNYLFDPTVYLRRFFEEPQSAEENIFLVDETHNLVN 414 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 +R+ + A L I +RL +L Sbjct: 415 RSREMYSAAISRNAV---------------------------LQIQKRLQKESVQLKRAC 447 Query: 316 ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTG 375 + + +E + F P + L + + L E+ L E Sbjct: 448 QKVLTTFDDIEAICEEKDTDFFAQRAP---------IDSLVKQIHRLTEVIAEWLPENQH 498 Query: 376 SHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHC 435 I ++ L + R++ + + + R + C Sbjct: 499 ----------IEELASILSFYFDCLSYLRISEYYDNG-----FYTSISLRNYDCVVKQFC 543 Query: 436 VGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHC 495 + + L + L I+ SA+L LN QE+ G + PF Sbjct: 544 --VDPAYLLSQRL-DKGKASILFSASLTPLN---YYQEVLG--GGEESLRYRIPYPFPEE 595 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 Q ++I + + N E+ +++ K E+K L+ F S M + Sbjct: 596 NQ-LLMIGSHL-QTTYKNREKSYPQISELLGKLSETKTG-NYLIFFPSYAYMDDVYQVFS 652 Query: 556 DLRLML--LVQGDQPRYRLVELHRKRVANGERSVLVGL----QSFAEGLDLKGDLLSQVH 609 + +QG + E + +G F+EG+DLKG L Sbjct: 653 QRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETFIGFCVLGGIFSEGIDLKGTRLIGTI 712 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I + P ++ + + + + +P ++Q GR+IR G V++ Sbjct: 713 IVSVGLPQMNPEQELIRTFYQEERGQGFQFAYQIPGM-NKVLQAAGRVIRDARDKGFVLL 771 Query: 670 YDKRLLTKNYGKRL 683 D+R + + Sbjct: 772 LDERFELPSVQRFF 785 >UniRef50_D1PKE7 Putative helicase c2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKE7_9FIRM Length = 494 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 104/546 (19%), Positives = 174/546 (31%), Gaps = 100/546 (18%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE----QKTL 79 R Q ++ + TL G + +A G+GKT +YL+ + + Q+ + Sbjct: 30 GMNVREGQIRLCHAMLDTLFGRD--VALCDAGVGLGKTYAYLVACVLWQLQRPRPMQRPV 87 Query: 80 VVSTANVALQDQIYSKDLPLLKKII-------PDLKFTAAFGRGRYVCPRNLTALASTEP 132 V+STA++ LQ+ I + +P L + + G+ R+VC L Sbjct: 88 VISTASITLQNAILEEYIPFLSDALIQNGYIQAPVCAVLRKGKERFVCDVRLLIRQK--- 144 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 KR K L + D + RRL + Sbjct: 145 ---------------QITARGKRFRKRAPALQEARQCLDLDRLPNLPRHE--RRLICVPS 187 Query: 193 SCLNRNCYYYRECPFFVARREIQEAE-----VVVANHALVMAAMESEAVLPDP---KNLL 244 C R+C + +C + R+ ++ + + V NH ++A P Sbjct: 188 RC-ARSCIAHTDCRY---RQYLKASNGPSVTIQVCNHNYLLADAAHRKNGWTPLLKDYQA 243 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 LV+DE H LP+ R T +L + KL+ ++L Sbjct: 244 LVIDEAHKLPETVRQM------NTRRICSAELLAYEKLLTAG---------HCGLSAQKL 288 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 A E A +P Q A+ L + EI L+ E Sbjct: 289 RAVTREFLAAFAPPETKAERAIPLKQTKAGTAALQHLDKAIGEI----------LKQRPE 338 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 L K S + +L L + + ++ T + Sbjct: 339 AMPRGLRGK-------------------------LSAVQQLIPLFLGTDSTFVRYLTWQR 373 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 G + V + L LW I+TS TL + FS ++ GL R Sbjct: 374 ESGGTGVDLCAVPFDLPKCLTSALWNEQKPAILTSGTLAAGEDFSHTEKRMGLDRGTPLR 433 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + + SPF++ + + P E +A + V + + LVLF S Sbjct: 434 TLKVLSPFDYEKNCMLYFPES----RRRKSEPEEERIARQIEELVCAA-NGHTLVLFTSY 488 Query: 545 RAMQRF 550 M R Sbjct: 489 DQMGRV 494 >UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B220_ENTCA Length = 832 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 121/692 (17%), Positives = 217/692 (31%), Gaps = 133/692 (19%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK-TL 79 P R QR++ A KTL + G+ L EAPTG GKT+S L P + + EE + Sbjct: 217 SFPFETFRKGQRELAAAAYKTL--KNGKRLFAEAPTGTGKTMSTLFPALKVLGEEGADRV 274 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 TA + Q+ L L + K T +D + Sbjct: 275 FYLTA-KTITRQVAEDALSKLADNGSETKSVTI--------------------TAKDKIC 313 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 FLD+ E ++ WD L +++ + Sbjct: 314 FLDERNCT--PEHCPYAQGYYNRINEALWDLLHHE----------NQITREVIETYGMK- 360 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAA---MESEAVLPDPKNLLLVLDEGHHLPDV 256 + CPF ++ +V++ ++ + + PD + LV DE H+L + Sbjct: 361 --HTVCPFELSLDVSVFCDVIIGDYNYLFDPTVYLRRFFEEPDEEYFFLV-DEAHNLVNR 417 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 +++ + P + ++L ++L + Sbjct: 418 SKEMYSATI---------------------------LRQPFKELKKKLPKDQQKLKRALN 450 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 ++ +E + P E + L LAEL L Sbjct: 451 RVDKEFAALAQLAKEEGWSYHHQAAPHETM---------VNQLYKLAELMKEWLPANPEH 501 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 + ++ + N L + E + + + Sbjct: 502 ELQEEVLQVYFEANHYLKISEFYDDHY-----------------ETTVEIDRYDIKLRQF 544 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 I + LE +L ++ SA+ L S QE+ G L SPF+ Sbjct: 545 CIEPAPFLESVL-DKGKASLLFSASFTPL---SYYQEVLG--GGDEALRYRLPSPFDPKN 598 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 QG + ++ + E I + +Q+ + K +V F S R + + Sbjct: 599 QGIFI--ADYIQTTYRQREASIPAIVDAI-QQMTAAKAGNYMVFFPSYRYLDDVAAAFSQ 655 Query: 557 L--RLMLLVQGDQPRYRLVELHRKRVANGERS-----------------------VLVGL 591 + +L+QG E + + + VL G+ Sbjct: 656 QAPEVEVLIQGTAMNEAEREAFLAQFQSFDSQQSSLLDKSQDEPKSQPKTLVAFCVLGGI 715 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 F+EG+DLKGD L + + P I+ + + + LP ++ Sbjct: 716 --FSEGIDLKGDRLIGAAVVGVGLPQINHEQELIREYYDEKKAAGFAYAYQLPGM-NKVL 772 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 Q GR+IR G V++ D+R T Y + Sbjct: 773 QAAGRVIRDVSDRGVVLLLDQRFRTPRYQELF 804 >UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacteria RepID=B0G3G8_9FIRM Length = 805 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 113/684 (16%), Positives = 223/684 (32%), Gaps = 132/684 (19%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE-QKTLVVST 83 F R Q+ ++ V +T+ + + L I+APTGVGKT++ L P + E + T Sbjct: 192 FAYREGQKNLVTSVYRTILRK--KKLFIQAPTGVGKTIATLFPAVKAVGEGLGDKIFYLT 249 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 A + + + L++ +K T +D + F ++ Sbjct: 250 A-KTITRTVAWQAFETLREQALRMKVIVL--------------------TAKDKICFCEE 288 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA---SCLNRNCY 200 + C KG D ++D ++ L++ L Sbjct: 289 TNCNPD-----YCPYAKGHFD-------------RVNDAVYELLTSSDELNREILEEQAR 330 Query: 201 YYRECPFFVARREIQEAEVVVANHALVM---AAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 ++ CP+ ++ + ++ ++ V A + + + L ++DE H+L + Sbjct: 331 KWKVCPYEMSLDVAVWVDAIICDYNYVFDPQAHLRRFFGEGNKGDYLFLIDEAHNLVERG 390 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 R S C E F L I +++ E+L E + Sbjct: 391 RQMYSASI--------------------CKEDF-------LGIKKKVRYEDEKLTERLED 423 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 N L +E + ++ + ++L + L + E E D+ E+ Sbjct: 424 CNRGLLAMKRECEEYKVLNSVSHIYLKLLNLVTELERFLE------ECEKEDIREE---- 473 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 + E + + + ++ + EG+ + C Sbjct: 474 -----------------VLEFYFHIRSFMDIHERLDENYVIYSELDG-EGKFRVHLFC-- 513 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + + L L + I SATL + + +L L D + +SPF+ E Sbjct: 514 VNPAGNLGEFL-QKGNSTIFFSATLLPITYYKKL-----LSTGKEDYAIYAESPFD-VEH 566 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 +++ E+ A + K KK LV F S R ++ + + Sbjct: 567 RLLMVGGDVSTKYTRRNEEMYQRYARYLWKLANGKKG-NYLVFFPSYRFLEDVYEAFEKI 625 Query: 558 --------------RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL----QSFAEGLD 599 R+ + Q + E + L+G F+EG+D Sbjct: 626 QEKEELEAFPALGHRITCVTQSQSMSEKGREEFLNTFEEERKESLLGFCVMGGIFSEGID 685 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 L D L I P + ++ + F+ L ++Q GR+IR Sbjct: 686 LTEDKLIGAVIVGTGLPQVCRER-EILKDYFDQHGQRGFDYAYLYPGMNKVLQAAGRVIR 744 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRL 683 + G +++ D R + Y + Sbjct: 745 TDEDRGVILLLDDRFFDRRYQETF 768 >UniRef50_A0C5Z5 Chromosome undetermined scaffold_151, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0C5Z5_PARTE Length = 702 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 117/688 (17%), Positives = 259/688 (37%), Gaps = 82/688 (11%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT---LSYLIPGIAIAREEQKT 78 P Q + + + +TL +E H +E PTG GKT L++++ +A K Sbjct: 12 FPYKFLYKEQLEYMQALKQTL--DEKGHGILEMPTGTGKTVSLLAFILAYLAQRPNTIKK 69 Query: 79 LVVSTAN-----VALQD-QIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEP 132 L+ T L++ ++ K + + + R +C Sbjct: 70 LIYCTRTVVEMEKTLEEVRLVMK-ARKAEGLNDNFTAVGLSSRRN-LCI----------- 116 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 D++ D + + + + + ++ + + + D + L + + Sbjct: 117 -NPDVVNQKDRVDSECRKRTAEWVKRGQSEICIFYDNFEKSAKDFIAN--LPNDVYSLSD 173 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLLVLDEGH 251 L +N + +CP++ AR +++A +VV N+ ++ S + D K ++V DE H Sbjct: 174 --LRKNGGFSMQCPYYTAREMVKKANIVVYNYLYLIDPGISSLLSKDYIKESVVVFDEAH 231 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 ++ DV +A + RL + + + I RLN ++L Sbjct: 232 NIDDVCIEAYTV---------RLNKPILAEAINNLKVVETQIQSETNEIQNRLNEEYKKL 282 Query: 312 YELIA-SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 + + LN + GQ + R + + + + + L + + L + + Sbjct: 283 IKNLEKKPEGELNQLVIPGQIRKARNFIDFMKRIIQKHQKHLMLFYIIPKALLKRY---- 338 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFE--AQSKLWRLASLAQSSGAPVTKWATREEREGQ 428 ++ G+ DI L + ++N L + K L+++AQ + Sbjct: 339 -KRKGNLDIDSLKQCGERLNLLLNTLQIAETDKFRPLSTVAQ----------FVIRIQRT 387 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL 488 L+ + S + ++ S +I+TS T+ ++ + ++ + + K+ D + Sbjct: 388 LNEKLMTLACFDSSLAMKNIFASFQSVILTSGTMSPIDIYPKILDFKPVVAKSIDIELTR 447 Query: 489 DS----PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 +S E G + E + N E F + E+ G++V S Sbjct: 448 NSIQPIIVTMSEDG----TELTSEFTFRNNEDVSRNYGNFLLELSENVPD-GLIVFMPSY 502 Query: 545 RAMQRFL---------DYVTDLRLMLLVQGD-QPRYRLVELHRKRVANGERSVLVGLQ-- 592 M+ + + ++ +++L+ D + ++ +RK G + L + Sbjct: 503 SRMEEWARQWQKDKYLEQISKNKVLLIESKDVNETSQKLQQYRKCCDVGRGAALFSIARG 562 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPID--SPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 AEG+D +G V + I FP ++ +++ ++L+ + A Sbjct: 563 KIAEGIDFEGHYGRCVAV--IGFPALNSKDTLILERCKFLEEKFKITKNDFIEFDAMRQT 620 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 Q +GR++R +G +++ DKR K+ Sbjct: 621 CQCLGRVLRGKQDYGIMIMADKRFAQKS 648 >UniRef50_C4M6T8 DNA repair helicase, putative n=2 Tax=Entamoeba RepID=C4M6T8_ENTHI Length = 1033 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 134/713 (18%), Positives = 264/713 (37%), Gaps = 98/713 (13%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + P + P PQ +M+ + + + +EG+HL +E+PTG GKTL L + Sbjct: 82 LAQSFP-YQPYQPQIEMMNSIQQAV--KEGKHLLMESPTGTGKTLVLLHSTLTF---PDM 135 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 +V ++ Q+ ++ K I ++K R Y C N + Sbjct: 136 RVVYASRTHNQLAQVVNET-----KKIGNIKGIVLASRDLY-CIYNPIKTCDDKNYWCTA 189 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST--DKASCL 195 L +L N + DG + +++ L+ L Sbjct: 190 KPNLLLKLKHINPCPYRPFGD----------DGKILPHVVMACQAVYKELNGIIIPQEEL 239 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPD-----PKNLLLVL 247 + C + CP++ AR +++++ + V + S+ L D + +LV+ Sbjct: 240 VKVCQKHNLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFVLVM 299 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H++ D D+L + L + + T QF K I + Sbjct: 300 DEAHNVEDAFMDSLT---------FNFTESLLNQTIETI--QFHKKRIKQTPENLLTISL 348 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF- 366 EL + S + + +++EH L +R + +L ++E Sbjct: 349 LTELISTVESFSIWMKNRSLPYKDSEHYLYGVFEDQAFLPFVERSPSSSRLLEAISEYIK 408 Query: 367 ----LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 L+DL T ++R + + M +++R +L + +T + Sbjct: 409 VVDNLDDLDIFTREPHVIRYINSFT--TQYIEMILFYIQVFRTPTLTKFFKIVITDY--- 463 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 G + F C+ + L +++ + +I S TL + + + +KE Sbjct: 464 ---NGLREMLFRCLSPSLPMSLLQIV---VRSVIFASGTLSPMK---AMAQELDIKEHVY 514 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRV---------------EPSIDNEEQHIAEMAAFFRK 527 F+ SP + V+P RV +++ + E A Sbjct: 515 KDFII--SPGYRMLSTEHVVPPSRVFGRIIISSSLGKSFIFTKKTSQDNEMIEQAGDTMF 572 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDY---------VTDLRLMLLVQGDQPRYRLVELHRK 578 +V SK G LV F+S + R ++ + L+ + + D+ ++ + Sbjct: 573 RVLSKSPGGALVFFSSYNMLNRIVELWKQHGIYTQLNKLKAIFIESKDKSEFKK-DFKEY 631 Query: 579 RVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN-R 635 ++ + + +V +G+ +EG+D D+ V + I +P + V + E+ N + Sbjct: 632 QIQSKKGAVFLGVFRGKLSEGIDFGDDMARLVIVVGIPYPSLGDINVNLKREYNSHENLK 691 Query: 636 YP-----FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 P E S+ A + Q VGR+IR +G +++DKR T + + L Sbjct: 692 NPDCLSGSEWYSI-QALRAVNQAVGRVIRHINDYGAFLLFDKRYSTNSVKEML 743 >UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID=C7RHR2_ANAPD Length = 777 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 119/672 (17%), Positives = 213/672 (31%), Gaps = 114/672 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE--EQKT 78 P R QR+M V + E ++L ++APTG+GKT+S + P I E K Sbjct: 182 NFPYGEYRKGQRKMAVAVYTAILKE--KNLFVDAPTGIGKTISSIFPSIKSIGEDLSDKI 239 Query: 79 LVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 ++ ++ I K L LL++ +K + R +C ++ Sbjct: 240 FYLTAKTTTGKEAI--KSLKLLEENGLKIKAVQITSKER-ICL------------NDEVR 284 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 DD C KG D D L+D D + Sbjct: 285 CNPDD------------CPFAKGHFDRVN-DALKDILTKETIMDY---------DIITSY 322 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL--DEGHHLPDV 256 YR CP ++ ++ ++ V + + + DE H+L D Sbjct: 323 AERYRVCPLEFEFDIASYSDFIICDYNYVFDPTVFLRRFFEEISSRYIFLIDEAHNLLDR 382 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 ARD S F+ L +N H + + L Sbjct: 383 ARDMYSFS-------------------------FKDSDFKELRACFDINKHKKIIKVLDE 417 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 ++ N N Y G++ + + L ++L LA+ L E+ Sbjct: 418 AILNFENNYEKYGKKLHY------------YTKNHIDSLDKILLELAKKMEKFLIEEKDD 465 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 + + + +N L + + G + +E C Sbjct: 466 RNYDYVLEMYFNINSYLKISD-----------YFMDGFYNV--ISFDEENEDKIFEIKC- 511 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + S L++ + I SATL + M G ++ + LD PF+ Sbjct: 512 -VDPSHILKKK-YDYARSTIFFSATLSPM---PFFMNMLGARDSLK---LRLDMPFSSEN 563 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL-DYVT 555 ++I + + + ++++ ++ + + SK+ + F S ++ DY Sbjct: 564 ---LIILQKSISTRYRDRSRNVSLISDLINEFINSKEG-NYFIFFPSFSYLEAVAGDYTV 619 Query: 556 DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS--FAEGLDLKGDLLSQVHIHKI 613 +L+Q K+ V + F+EG+DL GD L I + Sbjct: 620 RYSDDILIQDRSMSQLDRSKFIKKFTEESNEVAFVVLGGIFSEGVDLIGDRLIGSMIISV 679 Query: 614 AFP--PIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 P D ++ E F+ + Q GR+IRS G + + D Sbjct: 680 GMPGVSFDRNLIK---EHFDREGLSGFDYSYTFPGINKVFQAAGRVIRSEDDRGIIYLVD 736 Query: 672 KRLLTKNYGKRL 683 R Y Sbjct: 737 DRYSWNQYQMLF 748 >UniRef50_D1YWT2 DNA repair helicase n=1 Tax=Methanocella paludicola SANAE RepID=D1YWT2_METPS Length = 726 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 238/704 (33%), Gaps = 83/704 (11%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 A ++ P Q + + + L GR + E G GKTLS L P +AI RE+ Sbjct: 3 SAYEKFFPKPSFYPNQEEAMDKIYGALLA--GRLVLFEGACGTGKTLSALAPSLAIGREK 60 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 K ++++T +Q + + K I D+K G+ +CP + Sbjct: 61 NKKVIIATNVHQQMEQFIQEAREI--KAIADIKVAVVKGKTH-MCPLEKDYDECNLLREN 117 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGD--------------------------LDTYKWD 169 + +++ AK++GD Sbjct: 118 TFELLELERDIVKLKQKDGEAAKMRGDPGYADLRRSIAGEVMAGQDKIALLKKRSCPYLM 177 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 + + + D L++ + + + + ++C + + +R ++EAE+++ N+ ++ Sbjct: 178 AVMKEDNTSFRDWLFKGVRSPED--ITEEALKKKQCGYELLKRNLKEAELIICNYHHLLD 235 Query: 230 AMESEAVLP----DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVAT 285 +L +++L+ DE H+L AR ++ ++ + + Sbjct: 236 PDIRMRMLTWMGCSLSDVILIFDEAHNLEAQARSHSSITLS---------ENIVERALME 286 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEV 345 P L+ + Y+ + + R L ++ Sbjct: 287 ASSVKSPSKEGIEYFLMLLHKTIRDAYQSKIGFGEAMTYSWFDVTIRDPRGTEDMLSQKI 346 Query: 346 --------LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE 397 ++I L ++ + E + N+ K G + R L+ + + Sbjct: 347 KAEMQKRGIDIMTVLGDAIDIGLDIDEAYRNEY--KNGKSETKRSSSLLAVGVFMMTYLK 404 Query: 398 AQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 K+ L + E F C+ V+ + + +++ Sbjct: 405 EAGKVDYYPVLQARRSRDGMIYGRIE--------LFSCIPTDVTKPIMEGAY----SVVL 452 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 SATL+ F ++ G+ + + ++ + F + + + + + + + Sbjct: 453 MSATLKP---FDMVRSTLGILRETAE--LSYGTTFPPERRRTLAV-DVPPQFAKNRYMPD 506 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQ-GDQPRYRLVELH 576 + + + V + +L+ F S R + + + + V Sbjct: 507 MVKSLTQLLEDVINGSDGNVLIFFPSAAEASR-YSKLLKVDVPVFVDLAGVSAQDTKNEF 565 Query: 577 RKRVANGERSVLV----GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 K G ++VL+ G + EG+D K D V I + FP ++ ++ + + Sbjct: 566 FKHGDGGGKAVLISYLWGTLT--EGVDYKFDRCRTVVIVGVGFPSLNDRMMAVQNAYDTK 623 Query: 633 LN-RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 + +E L + Q GR++RS +G ++ D+R Sbjct: 624 FGVKKGWEYGVLFPTIRRIRQANGRVVRSPEDYGLRILADRRFT 667 >UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=A6M309_CLOB8 Length = 761 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 115/670 (17%), Positives = 228/670 (34%), Gaps = 121/670 (18%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE-QKTL 79 P R QR++I +T+ EE L ++APTG+GKT+S + P + E + + Sbjct: 188 NFPFEKYREGQRKLINVSYQTIKEEE--ILFVQAPTGIGKTISTIFPAVKAISEGIGEKI 245 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 + TA + ++ + L++ + + + + +D Sbjct: 246 IYLTA-KTINREVAEETFERLRQEGLKFRTITITAKEKTCINDDFDCNPEKCIYAKDYYG 304 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 + +T + E++ ++ + Sbjct: 305 KVKKVITNVIEREERISTEILKEYAE---------------------------------- 330 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 Y+ CPF ++ + ++ ++ + S + + + K ++++DE H+L D +R+ Sbjct: 331 -KYQVCPFELSLDISTYCDGIIGDYNYIFDPRVSLSRVLESKGNIVLVDEAHNLIDRSRN 389 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 S L+ + C + + K ++ ++N + Sbjct: 390 MYSAS-------------LYKSQILNCKKITKGKLNKLHSLLGKINDY------------ 424 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 +NL F E P E+ + Q K +E + F G DI Sbjct: 425 -FINLRNECDHREVKSFYEEEHPKELSKYLQLYLKESEEVLVRGNRF-------DGYEDI 476 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + +L MN + + +R S + L +C + Sbjct: 477 L---KLYFDMNAFTSTTQLYDENYRTCIEKDSQE---------------IKLTLYC--VN 516 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 + L L +I SAT+ + M G + + L SPFN E K Sbjct: 517 PAKNLREYL-GKCYSVIFFSATISPIK---YYVNMLGGDDNT--YRLKLPSPFN-KENLK 569 Query: 500 IVIPRMRVEPSIDNEEQHI--AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 + I + + S ++ F ++Q+ ++ S M+ ++ + Sbjct: 570 VHISPINIRYSYRKRTLSSVKDKICGFIKQQI-----GNYMIFSPSYAYMEELYSHMEES 624 Query: 558 RLM---LLVQGDQPRYRLVELHRKRVANGER----SVLVGLQSFAEGLDLKGDLLSQVHI 610 +L L+ Q +R N VL G+ F+EG+DL GD L I Sbjct: 625 KLEEFNLMKQKPNMTEEEKSEFLRRFKNSNNLLMFCVLGGM--FSEGIDLPGDQLIGSII 682 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNR-YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 + +P +D E +K + ++ + + Q VGR+IR+ G V++ Sbjct: 683 IGVGYPMVD-----MTNEVIKDFYKEDGYDYAYVFPGINKIQQAVGRVIRTETDKGRVLL 737 Query: 670 YDKRLLTKNY 679 D R + Y Sbjct: 738 IDDRYINNKY 747 >UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A7VIR7_9CLOT Length = 856 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 118/713 (16%), Positives = 241/713 (33%), Gaps = 134/713 (18%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI-AIAREEQKTLVVST 83 + R Q+QM A V K + GE R L ++APTG+GKT++ + P + A A + T Sbjct: 251 YEYRKGQKQMAACVYKAIEGE--RRLFVQAPTGIGKTMAAMFPSVKAFATGLVSKIFYLT 308 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 A + + + L LL++ + + +C Sbjct: 309 A-KTIAGTVPDQALTLLREHGLKFSSVMLTAKEK-ICLN--------------------- 345 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD---KASCLNRNCY 200 + + + C KG D ++ L+ ++ + + Sbjct: 346 ---ETMECDAEHCPYAKGHFD-------------RVNAALFEMITQEERMDREVIRSYAE 389 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP-----DPKNLLLVLDEGHHLPD 255 YR CPF + A+ ++ ++ V + D + ++DE H+L D Sbjct: 390 KYRVCPFELGLDASLFADTIIGDYNYVFDPRVNLKRFFSQTAYDTGRYVFLVDEAHNLVD 449 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 A SA + + L + L + +R H ++ Sbjct: 450 RASSMY--SATLYKEDFLAVKKLVKPYSKKLVRGLESCNRELLELKKRCPEHGYQI---- 503 Query: 316 ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTG 375 LN+I LY+ Q L E FL D + Sbjct: 504 --LNDIGVLYLKLLQ----------------------------LHTTMETFLEDYKQIPE 533 Query: 376 SHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHC 435 +I E L ++A + +G+ + +C Sbjct: 534 RKEI----------------LEFYFALTTFLNIADLIDDSYVIYDEL-TSDGRFMVRLYC 576 Query: 436 VGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHC 495 + ++ L +L + SAT+ + + + L + D+ + + SPF+ Sbjct: 577 --VHPANNL-KLCLDKGVSTVFFSATILPVKYYMEM-----LSDTDTDQAIYIPSPFDQK 628 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 ++ +V + + + + +++ + A + + + +V S + ++ + +T Sbjct: 629 KRQIMVGVDVSTKYTRRSVKEY--KRVAEYIRHLFKVHPGNYMVFLPSYKMLREVYEQMT 686 Query: 556 DLR---LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS--FAEGLDLKGDLLSQVHI 610 + LL Q + E + ++ + V + F+EG+DL GD L + Sbjct: 687 AEDCSVMELLCQEQNMKEADREAFLEHFSSQKNVVAFCIMGGIFSEGIDLTGDRLIGSVV 746 Query: 611 HKIAFPPIDSPVVI--------TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 P + + I + + F+ L + Q GR+IR+ Sbjct: 747 VGPGLPQVCNERKIMMDYFNTGKRTDTNADSSVDGFKYAYLYPGINKVFQSAGRVIRTED 806 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG-IVKKKEKTKSPRRR 714 G +++ D+R T Y ++L FP+E + G + +K ++ +R Sbjct: 807 DTGVILLLDERFGTGEY-----NSL--FPVEWQDAVFGNFDRLAQKVENFWKR 852 >UniRef50_C6LHG2 Putative helicase n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHG2_9FIRM Length = 915 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 112/732 (15%), Positives = 235/732 (32%), Gaps = 80/732 (10%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE-QKTLVVST 83 + R Q+ + A V +T+A E + L I+APTGVGKT++ + P + E + T Sbjct: 189 YPYREGQKDLAAAVYRTIARE--KKLFIQAPTGVGKTIATVFPAVKAVGEGLGDKIFYLT 246 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP--------RNL-TALASTEPTQ 134 A + + + LLK K + + +C A + Sbjct: 247 A-KTITRTVAQEAFSLLKAQGLQYKVLTLTAKEK-ICLCGEPDCNPEKCPYAQGHFDRVN 304 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW----------DGLRDHTDIAIDDDLW 184 + L P+ E+ +R + + + G + A ++ Sbjct: 305 DAVYELLTGWGKPDAGEQAERGKQKPEEPECGPEIPEGMRMPAEHGTEKTEEPACGPEIP 364 Query: 185 RRLSTDKA----------------SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM 228 + T L + ++ CPF ++ + V+ ++ V Sbjct: 365 EGVRTPAERPEEQEISGLRDSYTRENLIAHAKKWQVCPFEMSLDLSLWVDAVICDYNYVF 424 Query: 229 AAMESEAVLPDPK---NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVAT 285 + + ++DE H+L + R+ SA + + L + Sbjct: 425 DPQARLKRFFADGGRGDYIFLIDEAHNLVERGREMY--SAALYKEDFLEMKRLLAPVSRK 482 Query: 286 CMEQFRPKTIPPLAIPER-----LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGE 340 L L + + +++ L + G +R+ Sbjct: 483 AARALDKCNKYMLEWKRDCEGYSLCSDIAVFALALLNVSTQLETLLEDGDSPLNRYQTQP 542 Query: 341 LP--DEVLEICQRLAKLTEMLRGLAE-LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE 397 QR A+ + R + + + ++ + ++ + + E Sbjct: 543 ESVYGAGTHRQQRSARGAQAHRQPEDGSYAQEYLPGMQPEELPQAPETGAELRK--KVLE 600 Query: 398 AQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 ++ ++ + + E +G+ L C I + ++ L + Sbjct: 601 FYFQVRSFLAIYEELDESYEIYTEHEA-DGRFKLKLFC--IDTAGKIGECL-DRGRAAVF 656 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 SATL + + L L D + SPF+ ++ +V + + E++ Sbjct: 657 FSATLLPIRYYMDL-----LSGTQEDYAIYAHSPFDLKKKKVLVGTDVSSRYTRRGPEEY 711 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD--LRLMLLVQGDQPRYRLVEL 575 ++AA+ VE++ LV F S + ++ + ++ Q + E Sbjct: 712 -QKIAAYIHCAVEARAG-NYLVFFPSYKMLEDIRAVFEAAYTDVRVIAQNPRMTEEEREE 769 Query: 576 HRKRVANGERSVLVGL----QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 + L G F EG+DLK L I P I + ++ Sbjct: 770 FLACFSENNTQTLAGFCVLGGIFGEGIDLKRKKLIGAVIVGTGLPQICNER-EILKQYYD 828 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 + F ++Q GR+IR+ G +++ D+R + Y L +FP Sbjct: 829 RRSMDGFAHAYQYPGMNKVMQSAGRVIRTDEDTGVILLLDERFCRRQY-------LDIFP 881 Query: 692 IEQPEVPEGIVK 703 E + ++ Sbjct: 882 REWADYETCSLR 893 >UniRef50_UPI0001850E3B bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850E3B Length = 305 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 114/310 (36%), Gaps = 22/310 (7%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 +++ + R Q +M+ V + + +E + IEA TG+GKT+ YL+P A E K Sbjct: 1 MKKAYSSYDNRIDQLKMMDHVYEQFSQKES--MVIEAGTGMGKTMGYLLPSAYYALEHNK 58 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 +++ST LQ QI ++P L ++ + + GR Y+ Q D Sbjct: 59 RVIISTYTNQLQAQILYNEIPKLNNMLSFPIHVSILKGRTHYLDLFRFEQSLYENEKQFD 118 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + + Q GD++ + W R+ + Sbjct: 119 V-------VLTKLQILVWLTETETGDVEELNLT--------SGGYLFWNRVKSSSYMIDE 163 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV 256 ++ +Y + A+++ +A +V+ NH +++ ++ E V+DE HHL +V Sbjct: 164 KSNPWYSYDYYEHAKKQATKANIVITNHHMLIQSLSQEDSFF-ADCSHYVIDEAHHLEEV 222 Query: 257 ARDALEMSAEI---TAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 + L + + L L + + + + L+ Y Sbjct: 223 TQRFLGANLSYIGFKSSMNTLGTLDSPGLYSKLVHLLEKLGLHSIRESYELDMALSSCYG 282 Query: 314 LIASLNNILN 323 +I + Sbjct: 283 VIEDWFGFIG 292 >UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL53_9FIRM Length = 794 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 126/668 (18%), Positives = 211/668 (31%), Gaps = 113/668 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P RA QR +I V T +G L +APTG+GKT+S L P + A E+ + Sbjct: 192 TFPFPEYRAGQRALIKAVYGT--CRDGGQLLCQAPTGIGKTMSVLFPALK-ALEKGGPIF 248 Query: 81 VSTA---NVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 TA L +L+ DL L S T +D Sbjct: 249 YLTARGTTRT----AAETALAILRSHDADLS------------------LRSVTLTAKDK 286 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 + + + C KG D K ++ + + L+ Sbjct: 287 ICLQETRECTPDA-----CPYAKGYYDRIKNALWNALDTPSLTAEGLQHLAHQ------- 334 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLL-VLDEGHHLPDV 256 Y CPF + ++VV+ ++ + + A + + L ++DE H+LP Sbjct: 335 ----YEVCPFELGLDLSLWSDVVIGDYNYLFDPVVHLARFFESRGDYLFLIDEAHNLPSR 390 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 AR+ S ++ W + L + L + Sbjct: 391 AREMHSASLCKSSFW---------------------------DAKKCLGSGKSSLKNALN 423 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 +N I + +E G+ + +R L L L E N L E Sbjct: 424 KVNQIFISWRHRCEEESSDSRSGK----TFFVKERAELLDRALLKLCEPLENWLDEH--- 476 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 D H +LQ+ + + ++ + E + + Sbjct: 477 RDPSETHDALLQLYFDVRAW---------LRISDTFDDHFVLQIASHGSEVRAAMLC--- 524 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + S L + ++ SATL N +++ GL E R VAL SPF Sbjct: 525 -LDPSAFLAND-FSKGRAAVLFSATLAPAN---YYKDLCGLPEA---RAVALRSPFP-AR 575 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 + R V + I +++ + + L F S +Q L+ + Sbjct: 576 NLGLWCARH-VSTRYKDRSASIPQVSDLIA-CLAGARTGNYLAFFPSYSYLQSVLEDFSA 633 Query: 557 L--RLMLLVQGDQPRYRLVELHRKRVANGER------SVLVGLQSFAEGLDLKGDLLSQV 608 L Q + +VL G+ F EG+DL GD L V Sbjct: 634 RYPNFSTLCQQSSMDEAQRTVFLSHFKPNPPQTQIGFAVLGGV--FGEGVDLTGDRLIGV 691 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I P + P + + F+ ++Q GR+IR+ G V+ Sbjct: 692 AIVGPGLPQVG-PRQEQLRQHFEETCGSGFDYAYRYPGMNKVLQAAGRVIRTPQDKGVVL 750 Query: 669 IYDKRLLT 676 + D R + Sbjct: 751 LIDDRFAS 758 >UniRef50_C7P046 DEAD_2 domain protein n=2 Tax=Halobacteriaceae RepID=C7P046_HALMD Length = 739 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 115/709 (16%), Positives = 231/709 (32%), Gaps = 89/709 (12%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 P P QR+ + + L +GR + E G GKTL+ L+P + AR+ KT+V+ Sbjct: 12 FPYEEPYDHQREAMGGIYDALT--DGRDVLFEGACGTGKTLASLVPALEYARQADKTVVI 69 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP-------------------R 122 +T Q + + ++ G+G +C Sbjct: 70 TTNVHQQMRQFVEDARAITAQ--ESIRAVVFRGKG-SMCHIDVDYEECQALRDTTRDLVD 126 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAK--LKGDLDTYKWDGLRDHTDIAID 180 A E + +LL + + +E A+ + +L + D TD I Sbjct: 127 KERERAELERQESELLDQATEGPSDGENQENALEARNAVMDELQAVEEDLEELQTDATIC 186 Query: 181 DDLWRRLSTDKASC-------------LNRNCYYYRECPFFVARREIQEAEVVVANHALV 227 D +R L+ D + + C + + + ++ ++VV N+ + Sbjct: 187 DHYYRNLTVDTTEFYAWLYEDVRTPDDVYEYAHDRGLCGYELLKEGVEGVDLVVCNYHHL 246 Query: 228 MAAMESEAVL----PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLV 283 + M E DP++++ V DE H++ + ARD + +T +D + Sbjct: 247 LDPMIREQFFRWLGRDPEDVVAVFDEAHNVENAARDHARRT--LTETTVESAIDELAES- 303 Query: 284 ATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 E+ + A E + + + + + Q +H + + D Sbjct: 304 ----EETAAGSGGEGARSEAAHNVLATFLRALRTTYDEAFGFGEREQVEDHWYDLSIAND 359 Query: 344 EVLEIC--------------QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQM 389 + + + L + E+ R L + + K G D + + + Sbjct: 360 DRRDELTLAFLQEYSGPGFHEELDQALELGRELDQQYEEAF--KEGDLDTRKECQTLQAA 417 Query: 390 NRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 E L + ++ + + C+ V+ L + Sbjct: 418 QFLSAWLEESDDLGQYPVVS-------VRRREESGDIYGRAELYTCIPSNVTGDL----F 466 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 + ++ SATLR F Q++ GL + +A F E+ + Sbjct: 467 SDLHASVLMSATLRP---FDVTQDVLGLTDA---EAMAYGEQFP-EERRRTYAVDGPALF 519 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPR 569 S + ++ + A + L F S +R+ + V L + Sbjct: 520 SSERDDPSTQDAVAGVLEDAAQMTPGNTLAFFPSYAEAERYHERVDVDGKQYLDEPGTQA 579 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 L + R + L G EG+ GD V + + +P +D + + + Sbjct: 580 RDLRDSFVDRDDALLCTSLWGT--LGEGVSYDGDDARTVVVVGVPYPHLDDRMDAVQNAY 637 Query: 630 LKSLNRY---PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 S + Q +GR++RS +G ++ D+R Sbjct: 638 AMSFGDDEEAGWHYAVEIPTIRKTRQALGRVVRSPEDFGVRILLDRRYT 686 >UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei RepID=Q57ZK3_9TRYP Length = 963 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 125/726 (17%), Positives = 247/726 (34%), Gaps = 94/726 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 ++ P F P Q + + V L G + +E+PTG GKTL L+ G+ +E Sbjct: 7 DGVEVSFP-FAPYPVQEEYMRSVIYALKGSH--NALLESPTGTGKTLC-LLCGVLAWLDE 62 Query: 76 QKTLV----VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTE 131 ++ +S L+ S+ L ++I + K R RY ++ L S Sbjct: 63 RRICFLNSGISDRTSLLRVVYCSRTHAQLSQVIREFK------RTRYSSIFSMAVLGS-- 114 Query: 132 PTQQDLLAFLDDEL-TPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID--DDLWRRLS 188 +D + L P++ ++K C++L+ D + + G D D+LW Sbjct: 115 ---RDHMCLNSQVLQLPSSHAQRKLCSQLREDRNCRFYRGYEARAAGRKDFPDELWIH-D 170 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLD 248 + R C + CP++ R ++A+VV + V + + + +L++D Sbjct: 171 MEDLVSEGRKCGF---CPYYYERDAAKDADVVFLPYNYVFDVSFRKQLPFELSGSVLIVD 227 Query: 249 EGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHC 308 E H+LP V L ++ + L + A M++ K + + Sbjct: 228 EAHNLPSV----LGSASCMNLQPLDLANAICECSRAMAMQRILSKDEDNNDDTSAVTSE- 282 Query: 309 EELYEL------IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 +E L + + +P+ +EAE + + C+ + + M+ L Sbjct: 283 QEFASLKVILCGLEACIVNEPRELPSKEEAETHAGRLDTSGSL-TGCEIVRSGSYMISFL 341 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA--------QSKLWRLASLAQSSGA 414 + + + ++ +I + L E+ Q L + Sbjct: 342 RKAAITHDIFFGDGGEGGFINEVISKALTVLSQSESTGVGLSKVQQFLSFVFERCGEGDD 401 Query: 415 PVTKWATREEREGQLHLWFHCVG---IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 + + + + H + + +S + + L + +++TS TL L S Sbjct: 402 DSSYFILTDGKNTNGHANPRTLSYWCLDISRVV-QSLVCDLHSLLLTSGTLSPL---SHF 457 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ--- 528 G+ S +Q + N + Sbjct: 458 AMELGVS----FEVCLKGSHVIEEKQVIGSVLCRGPGGERLNGGYAFRNGVDYRIGLGMA 513 Query: 529 ---VESKKHLGMLVLFASGRAMQRFLDYVT---------DLRLMLLVQGD---------Q 567 + G+LV F S A+ +D + +L Q Sbjct: 514 LVNISRITPGGILVFFPSYVALNAAVDLWRTGGGRANETETVWAMLEQVKPVFVEPAAAA 573 Query: 568 PRYRLVELHRKRVANG--ERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 +V ++ V + L+ + +EG+D V I I F V Sbjct: 574 DAQTIVTSFQREVDANSTRGAFLLAVCRGRISEGIDFADQHGRCVVIAGIPFANHTDLFV 633 Query: 624 ITEGEWLK-------SLNRYPF--EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 + E++ ++ PF + A ++ Q VGR+IR +G VV+ D+R Sbjct: 634 RLKREYITRVSTKRPAVGGKPFTGNEWYMNEAMRSVNQCVGRVIRHKDDYGAVVLADERF 693 Query: 675 LTKNYG 680 + + +G Sbjct: 694 VDRLHG 699 >UniRef50_C0ESD4 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ESD4_9FIRM Length = 816 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 124/668 (18%), Positives = 227/668 (33%), Gaps = 115/668 (17%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA-IAREEQKTL 79 Q P F R Q++M A + + E +H+ ++APTGVGKT+S L P + + E+ + + Sbjct: 211 QFP-FSFRPGQKKMTAIAYQAM--ENKKHIFLQAPTGVGKTISTLYPALKELGAEKAENI 267 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 TA + + + LLKK L + + +C Sbjct: 268 FYLTA-KTITRTVAEDTIKLLKKQGLFLSAVTITAKEK-ICI------------------ 307 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 E N E +R ++ + L +I+ ++ L Sbjct: 308 ---QEEMQCNPESCERAKGHFDRINEALYALLTAECEISRENILL-------------FA 351 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP--KNLLLVLDEGHHLPDVA 257 Y+ CP+ ++ A+ ++ ++ V + L + + + ++DE H+L D A Sbjct: 352 EKYKVCPYELSFEAAVWADCIICDYNYVFDPHVNRKSLIEGSLRQNIYLIDEAHNLLDRA 411 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 R+ SA+I +++ F L++ + + Sbjct: 412 REMY--SADIAKSDFKVPKKYFKDRNRF-------------------------LFKKLGN 444 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 L Q+ RF + E D + L + L E H Sbjct: 445 CVMALRKLEKQAQDGT-RFRLHENVDAMYFPIFHL--------------IGPLEEYLADH 489 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 D I++ KL + S + ++ + R+ L L+ Sbjct: 490 DNFSEREEIVEFYF---------KLTHFYMMLDSMDSGYEIYSEKRGRDFLLRLFC---- 536 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + SD+LE + S I SATL + +++ G + SPF E Sbjct: 537 VNPSDKLEEYIENSRSS-IFFSATLLPV---QYYRQLLG---GNRFEAYQIASPFA-KEN 588 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 + I E +M + + KK ++ F S + Sbjct: 589 RLLAITEDVTSRYTRRGEWEYGKMIRYL-ELCLEKKAGNYMIFFPSYEMLTSVYGMAEQS 647 Query: 558 RL----MLLVQGDQPRYRLVELHRKRVANGERSVLVG---LQS-FAEGLDLKGDLLSQVH 609 L ++VQ R E ++ L+G L S F+EG+DL G+ L V Sbjct: 648 NLALVSEIIVQEPSMEERSREAFLEKFREQSGKPLIGFCVLGSIFSEGIDLTGNSLIGVL 707 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I P I + + + + + P ++Q GR+IR+ G +++ Sbjct: 708 IVGTGLPQICNEREVIRAYFDRQQKKGYDYAYRYPGM-NKVLQAAGRVIRTAEDVGTILL 766 Query: 670 YDKRLLTK 677 D+R L + Sbjct: 767 MDERFLER 774 >UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REN5_9FIRM Length = 806 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 127/679 (18%), Positives = 227/679 (33%), Gaps = 110/679 (16%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 P R QR++ V KT+ + L +APTG+GKT+S L PG+ E + + Sbjct: 209 FPFPEYRKGQRKLAIAVYKTILDHD--ILFAQAPTGIGKTISTLFPGLKAIGEGKIEKIF 266 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 + Q+ L L K K A T +D + L Sbjct: 267 YVCAKNITAQVAYDALQQLYKQNLHFKSVAI--------------------TAKDKICLL 306 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 + + + C KG + K ++ D + ++ + Sbjct: 307 AERNC-----DPQNCPYAKGYYNRNK----NALYELITQHDF---IDYERLVEYGKK--- 351 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAA-MESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 Y CPF + + ++V++ ++ V + + D N L ++DE H+L D AR+ Sbjct: 352 YVVCPFELGLDACEYSDVIIGDYNYVFDPRVYLKRFFIDKGNYLFLVDEAHNLVDRAREM 411 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN 320 SAE++ +++ K A L++ LN Sbjct: 412 Y--SAELSKQDFQIIKAYIPKSFAK-------------------------LHKAHHHLNK 444 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 +E + F + + + Q L KLT L E + E Sbjct: 445 QFISLRKQCEEKQLDFLAQK--EAMPFFLQCLEKLTNELNEYLEGIHENEMED------- 495 Query: 381 RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRV 440 + E K +A+ T R++++ +W + Sbjct: 496 -------------ALRELYFKALHYQRIAEFYDEHFTTCIQRQKQD----VWIRQYCMNP 538 Query: 441 SDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI 500 S ++ +L R I SATL + + G + ++L SPF E + Sbjct: 539 SQPIKNIL-RKGRATIFFSATLSPI---DYYLTLLG--GNHDSKRLSLPSPFP-KEHVHV 591 Query: 501 VIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF-ASGRAMQRFLDYVTDL-- 557 +I Q I + + + G +LF S M++ ++ Sbjct: 592 MIANQI-STRYRQRSQSIDAICELLYATITQRN--GNYILFAPSYAYMKQLYEHFIKSYP 648 Query: 558 RLMLLVQGDQPRYRLVELHRKRVANGERS----VLVGLQSFAEGLDLKGDLLSQVHIHKI 613 + + Q + + + + G F+EG+DLKGD L V + + Sbjct: 649 DIDVFYQQQDMTEEEKQTFLAQFQISKHLRLYFCVCG-GMFSEGIDLKGDALIGVILVGV 707 Query: 614 AFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 P I+ P + N+ + ++Q GRLIRSH G ++ D+R Sbjct: 708 GLPQIN-PYSDLIRQHFDEENQQGYAYAYQYPGMNKILQSAGRLIRSHEDKGILLFIDER 766 Query: 674 LLTKNYGKRLLDALPVFPI 692 + +Y L L + I Sbjct: 767 YTSLHYRGALPSHLHPYTI 785 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=E... 680 0.0 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 510 e-142 UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacteriu... 509 e-142 UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Lept... 509 e-142 UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 T... 508 e-142 UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 507 e-142 UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans D... 507 e-142 UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B... 502 e-140 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 502 e-140 UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=5... 502 e-140 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 502 e-140 UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG 501 e-140 UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damag... 499 e-139 UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6... 499 e-139 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 498 e-139 UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassifie... 497 e-139 UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteob... 497 e-139 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 496 e-138 UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella m... 495 e-138 UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium Rep... 494 e-138 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 494 e-138 UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB... 493 e-138 UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168... 491 e-137 UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejue... 490 e-137 UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae Rep... 489 e-136 UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylo... 488 e-136 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 487 e-136 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 486 e-135 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 485 e-135 UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q... 485 e-135 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 483 e-135 UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 ... 483 e-134 UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V... 482 e-134 UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC50... 480 e-134 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 480 e-134 UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0... 480 e-134 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 479 e-133 UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BA... 478 e-133 UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 143... 478 e-133 UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium Re... 478 e-133 UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivo... 478 e-133 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 477 e-133 UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1... 477 e-133 UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 ... 475 e-132 UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3... 475 e-132 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 474 e-132 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 474 e-132 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 474 e-132 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 473 e-132 UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax... 473 e-131 UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococc... 473 e-131 UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans... 472 e-131 UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2... 472 e-131 UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV 471 e-131 UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1... 471 e-131 UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_A... 471 e-131 UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=... 470 e-131 UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteo... 470 e-131 UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus... 470 e-131 UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9X... 470 e-131 UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID... 470 e-131 UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphi... 470 e-130 UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesar... 469 e-130 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 468 e-130 UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax... 468 e-130 UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1... 468 e-130 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 468 e-130 UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivoran... 468 e-130 UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 1606... 467 e-130 UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteoba... 467 e-130 UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZ... 467 e-129 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 465 e-129 UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Trep... 465 e-129 UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanu... 464 e-129 UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae... 464 e-129 UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylo... 463 e-128 UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 143... 461 e-128 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 460 e-128 UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemm... 460 e-127 UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW 458 e-127 UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium h... 458 e-127 UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH 458 e-127 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 458 e-127 UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID... 456 e-126 UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR... 455 e-126 UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4... 454 e-126 UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 ... 453 e-126 UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteo... 453 e-125 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 452 e-125 UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix ... 452 e-125 UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad... 451 e-125 UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-ter... 450 e-125 UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammapro... 450 e-124 UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2... 450 e-124 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 449 e-124 UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC... 448 e-124 UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B... 448 e-124 UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 Rep... 447 e-124 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 447 e-124 UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A... 446 e-123 UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterinea... 445 e-123 UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4... 445 e-123 UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus ... 444 e-123 UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxida... 444 e-123 UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomic... 443 e-122 UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=... 442 e-122 UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 ... 441 e-122 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 438 e-121 UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter no... 434 e-120 UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curviba... 432 e-119 UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepI... 431 e-119 UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA 431 e-119 UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis... 431 e-119 UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_... 429 e-118 UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV... 426 e-117 UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP 425 e-117 UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus Re... 424 e-117 UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus fer... 423 e-116 UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP... 422 e-116 UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 425... 420 e-116 UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incer... 420 e-115 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 420 e-115 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 419 e-115 UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3... 417 e-115 UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=1... 417 e-115 UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepI... 414 e-114 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 413 e-114 UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus R... 413 e-113 UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_... 411 e-113 UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibact... 411 e-113 UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrop... 410 e-113 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 410 e-112 UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces c... 409 e-112 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 408 e-112 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 408 e-112 UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_... 408 e-112 UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 Re... 407 e-112 UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23... 407 e-112 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 407 e-112 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 407 e-112 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 406 e-111 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 406 e-111 UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C09... 405 e-111 UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1... 404 e-111 UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borr... 403 e-110 UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio pep... 401 e-110 UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n... 399 e-109 UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinom... 398 e-109 UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquete... 394 e-108 UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_... 394 e-108 UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL... 391 e-107 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 389 e-106 UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium... 388 e-106 UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyra... 383 e-104 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 382 e-104 UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1W... 380 e-103 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 377 e-102 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 374 e-102 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 374 e-102 UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured T... 370 e-100 UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=C... 368 e-100 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 367 e-100 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 366 2e-99 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 363 1e-98 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 363 2e-98 UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus ... 361 5e-98 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 357 7e-97 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 356 1e-96 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 354 8e-96 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 350 9e-95 UniRef50_Q29FS3 Regulator of telomere elongation helicase 1 homo... 349 3e-94 UniRef50_Q9W484 Regulator of telomere elongation helicase 1 homo... 341 5e-92 UniRef50_UPI00017937E6 PREDICTED: similar to regulator of telome... 341 5e-92 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 341 8e-92 UniRef50_B3S2Q7 Putative uncharacterized protein n=1 Tax=Trichop... 340 1e-91 UniRef50_B4L1Z2 Regulator of telomere elongation helicase 1 homo... 339 3e-91 UniRef50_UPI000180C89E PREDICTED: similar to BRIP1 n=1 Tax=Ciona... 336 1e-90 UniRef50_UPI0000D55CB6 PREDICTED: similar to fanconi anemia grou... 336 2e-90 UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=... 335 4e-90 UniRef50_D0N844 Putative uncharacterized protein n=1 Tax=Phytoph... 332 3e-89 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 332 3e-89 UniRef50_Q7QEI1 Regulator of telomere elongation helicase 1 homo... 331 5e-89 UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Synt... 330 1e-88 UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environ... 330 1e-88 UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium pe... 329 2e-88 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 329 2e-88 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 328 4e-88 UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostri... 328 5e-88 UniRef50_Q0VGM9 Regulator of telomere elongation helicase 1 n=22... 328 5e-88 UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefac... 326 1e-87 UniRef50_Q9NZ71 Regulator of telomere elongation helicase 1 n=42... 326 2e-87 UniRef50_Q8SSE9 ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD sub... 326 3e-87 UniRef50_UPI000186CB9B regulator of telomere elongation helicase... 325 3e-87 UniRef50_A9CS00 DNA repair helicase n=1 Tax=Enterocytozoon biene... 325 3e-87 UniRef50_UPI00015B5E86 PREDICTED: similar to regulator of telome... 325 3e-87 UniRef50_A7SA32 Predicted protein n=3 Tax=Eumetazoa RepID=A7SA32... 325 4e-87 UniRef50_UPI0000DB6B80 PREDICTED: similar to CG4078-PA n=1 Tax=A... 324 5e-87 UniRef50_A0CAB5 Chromosome undetermined scaffold_161, whole geno... 324 8e-87 UniRef50_B8BYI1 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 322 4e-86 UniRef50_A4RVJ2 Predicted protein n=1 Tax=Ostreococcus lucimarin... 321 5e-86 UniRef50_B9SQD1 Regulator of telomere elongation helicase 1 rtel... 321 5e-86 UniRef50_B9GEL6 Predicted protein (Fragment) n=2 Tax=rosids RepI... 321 8e-86 UniRef50_C4V9F4 Putative uncharacterized protein n=1 Tax=Nosema ... 321 8e-86 UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei Re... 320 1e-85 UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=... 319 2e-85 UniRef50_UPI000180BD56 PREDICTED: similar to predicted protein n... 319 3e-85 UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9X... 319 4e-85 UniRef50_Q4FXD6 Helicase, putative n=5 Tax=Trypanosomatidae RepI... 317 7e-85 UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiph... 316 3e-84 UniRef50_D1ISD7 Whole genome shotgun sequence of line PN40024, s... 315 3e-84 UniRef50_Q8SRT4 DNA REPAIR HELICASE OF THE RAD3/XPD SUBFAMILY n=... 315 3e-84 UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=... 315 4e-84 UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Rosebur... 314 1e-83 UniRef50_P06839 DNA repair helicase RAD3 n=85 Tax=Fungi/Metazoa ... 313 1e-83 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 312 2e-83 UniRef50_C6LHG2 Putative helicase n=1 Tax=Bryantella formatexige... 312 4e-83 UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium praus... 311 5e-83 UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteri... 311 5e-83 UniRef50_A0C5Z5 Chromosome undetermined scaffold_151, whole geno... 311 6e-83 UniRef50_Q9BX63 Fanconi anemia group J protein n=28 Tax=Euteleos... 311 7e-83 UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi... 311 8e-83 UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacte... 309 3e-82 UniRef50_Q01BG6 Helicase of the DEAD superfamily (ISS) n=2 Tax=M... 308 4e-82 UniRef50_A4S0W9 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 308 5e-82 UniRef50_P18074 TFIIH basal transcription factor complex helicas... 308 5e-82 UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacter... 308 6e-82 UniRef50_C4Z491 Putative uncharacterized protein n=1 Tax=Eubacte... 307 1e-81 UniRef50_B7FQG3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 304 8e-81 UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit ... 304 9e-81 UniRef50_A4S895 Predicted protein (Fragment) n=2 Tax=Ostreococcu... 304 1e-80 UniRef50_A2E1B9 Helicase, putative n=1 Tax=Trichomonas vaginalis... 303 1e-80 UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B22... 303 1e-80 UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variab... 303 1e-80 UniRef50_Q8W4M7 DNA repair helicase UVH6 n=6 Tax=Eukaryota RepID... 303 1e-80 UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 302 3e-80 UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium t... 302 3e-80 UniRef50_B8DGR4 Helicase c2 domain protein n=17 Tax=Listeria Rep... 302 4e-80 UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lact... 301 8e-80 UniRef50_A2E4I6 Helicase, putative n=1 Tax=Trichomonas vaginalis... 301 9e-80 UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostri... 301 9e-80 UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=... 301 9e-80 UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_A... 300 1e-79 UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C... 300 1e-79 UniRef50_A0DE87 Chromosome undetermined scaffold_47, whole genom... 300 2e-79 UniRef50_C1DZL6 Predicted protein n=4 Tax=Eukaryota RepID=C1DZL6... 299 3e-79 UniRef50_C4M6T8 DNA repair helicase, putative n=2 Tax=Entamoeba ... 299 3e-79 UniRef50_C1FYI3 DNA repair helicase RAD3 n=2 Tax=Onygenales RepI... 299 3e-79 UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2N... 299 4e-79 UniRef50_Q4T770 Chromosome undetermined SCAF8259, whole genome s... 297 8e-79 UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine ... 297 8e-79 Sequences not found previously or not previously below threshold: >UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=Enterobacteriaceae RepID=DING_ECOLI Length = 716 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 716/716 (100%), Positives = 716/716 (100%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK Sbjct: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC Sbjct: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID Sbjct: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP Sbjct: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI Sbjct: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR Sbjct: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA Sbjct: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK Sbjct: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL Sbjct: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 Query: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL Sbjct: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS Sbjct: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR Sbjct: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 179/718 (24%), Positives = 302/718 (42%), Gaps = 43/718 (5%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + L+E +P + R Q M +V + L ++ +HL IEA TG GK+L YL+P I + ++ Sbjct: 252 ERLKETLPHYESRDAQDMMFQEVMQAL--DDNKHLLIEAGTGTGKSLGYLLPSIYQSVKQ 309 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ++ ++VST + LQ+Q+ +D+PLL +++P K GRG Y+C R Sbjct: 310 EQKVMVSTHTINLQEQLRDRDIPLLTQVVPFPFKAAIFKGRGHYLCLRKFEH-----KIN 364 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 + +++ Q GD + G D W +S+D SC Sbjct: 365 RRDFHSPKEDVITAAQMLVWLTQTENGDDEELNLGGR--------GGDFWETISSDSDSC 416 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 L R C ++R+C + A+ E A+VV+ NH+ + +++ L P LV+DE HHL Sbjct: 417 LGRACPWFRKCYYHRAKHEAGIADVVITNHSKLFTDVKANHQLL-PSYERLVIDEAHHLE 475 Query: 255 DVARDALEMSAE-------ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DVA L + + +T + + L K + ++ +RL Sbjct: 476 DVAGKHLGLQMKYFSVVHTLTRLYKDSRSGQLPALRQLLQASPHEKAVEWSSVIDRLYPD 535 Query: 308 CEELYELIASLNNILNLYMPAGQEAE--------HRFAMGELPDEVLEICQRLAKLTEML 359 + E L++ L +P +A R + + P + + + ++ L Sbjct: 536 LITVKENWDRLSDQLFGLLPERGDASPGDAGQFSLRLSPLKKPKDWDSMAELEHQIHLTL 595 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + ++E D L+ ++ A + L S + W Sbjct: 596 GDVVRKGDKLIAEMKEDLDDYSADSLLTDLSGLFKDLAAHRE--DLRSFMALNDEGTVYW 653 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 L + V + VS L+ L + +I+TSATL SF + E GL+E Sbjct: 654 MEANGNFRSKSLQLYAVPVDVSSHLKELFFDKKQSVILTSATLSVDKSFQFMIENLGLQE 713 Query: 480 KAGD---RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 A V L SPFN+ EQ +V+PR + H Sbjct: 714 AAEAGNLNTVQLPSPFNYREQALLVVPRDFPSVKGSVGDALFVNTLVKSLADTAVATHGR 773 Query: 537 MLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 MLVLF S R +++ + + + + +L QG R +R + SVL+G Sbjct: 774 MLVLFTSYRMLRQVHEPLKEALASSDITVLGQGMDGTSRT--KLIRRFQDSSASVLLGTS 831 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF EG+D+ G+ L+ + I ++ F P + P+V + E L+ + PF S+P A Q Sbjct: 832 SFWEGVDIPGEALTCLAIVRLPFQPPNHPLVEAKSELLQQQKKNPFMKLSVPQAVIRFKQ 891 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 GRL+R+ G V++YD R++ YGK L +LP +E + + E + Sbjct: 892 GFGRLVRTAQDKGIVIVYDTRVIESYYGKYFLYSLPGPKMEHMPTEGIVPRISEWLQE 949 >UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacterium RepID=C3WBH3_FUSMR Length = 823 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 176/736 (23%), Positives = 297/736 (40%), Gaps = 60/736 (8%) Query: 4 TAALKAQI---AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 +K I L + F R Q M + K L E + +EA TG GK Sbjct: 115 DENIKIDIAPYFEKTGLLSQAFKGFEYRDEQLHMATHIEKGLNSETP--VIVEAGTGTGK 172 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYV 119 TL+YLIP I A + +K +V+ST + LQ+Q+ +KD+P+ K++I D K+ GRG Y+ Sbjct: 173 TLAYLIPSIEWAIKNKKRVVISTNTINLQEQLLNKDIPIAKRVIQGDFKYILVKGRGNYL 232 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C R + + + L ++LT + + + K + G + Sbjct: 233 CNRKYHNVVMGDKS-------LLEDLTTSQKNQFAEIIKWGNQTE----TGDKAELTFEA 281 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME------- 232 D+ +W ++ C C Y EC F +R E ++A++++ NH + + + Sbjct: 282 DNTIWELFQSETDMCSGNKCPYKNECFFLKSRDEKKKADILITNHHMYFSDLAIRKEIGF 341 Query: 233 SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE-------ITAPWYRLQLDLFTKLVAT 285 + P+ L+V DE H++ VARD A + + T + + Sbjct: 342 NTEYSILPEYGLVVFDEAHNIEKVARDYFSYEASKYSFTKTMNQIFITEGKKKNTGALDS 401 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEV 345 ++ + + + I ER EE+ SL Y E + MG Sbjct: 402 VLKHIKSEELDNHGILER---EIEEIKLKHKSLYIAGREYFNHIIEVFSKGEMGTFTFRA 458 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSEK--------TGSHDIVRLHRLILQMNRALGMFE 397 + + L + FL++ + D I ++ + + Sbjct: 459 RKEEIENSPFLNTLNDFKDKFLSEYNSYNRKVRELIKELKDEEDRAGYINDFSKYIDRID 518 Query: 398 AQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 +R S W R+ +++ +L++ L+ ++ II Sbjct: 519 GFINNFRFIH--DFSDEEFIYWIEVNSRKSNS--KLVATPLKIDGELQKNLYLNLNQIIF 574 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 TSAT+ N F+ +E GL + D+ + SPF++ Q K+ IP PS N Sbjct: 575 TSATIAIGNDFTYFKESIGLDKNTLDKVIH--SPFDYDNQMKVYIPNDIPNPSDKNF--- 629 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQPRYRLV 573 I E++ + + Q+ VLF S + + D + + L + G PR +LV Sbjct: 630 IDEISEYLKTQL-IVSRGKAFVLFTSYQTLNYVYYMIRDELEANGIELFIHGMAPRSQLV 688 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 ++ NG+ VL G SF EG+D+KG LS V + K+ F PV E + + Sbjct: 689 NMYI----NGKNPVLFGTDSFWEGVDIKGHQLSNVILIKLPFKVPSDPVTEAIIEHITAQ 744 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 + F +P A Q +GRLIRS G + I D R++TK YGK +D++P I Sbjct: 745 GKNSFTEYQIPEAVIKFKQGIGRLIRSKTDSGTITILDNRVITKKYGKYFMDSIPTKNIN 804 Query: 694 QPEVPEGIVKKKEKTK 709 E + + K Sbjct: 805 ILSKSEILKDISKSVK 820 >UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EQ06_9BACT Length = 738 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 246/727 (33%), Positives = 356/727 (48%), Gaps = 44/727 (6%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA--------GEEGRHL-AI 52 L K +I L +P F R QR MIA+VA+T + ++G++L I Sbjct: 17 TLFEEEKQEIRVLLDRLSRTLPGFAARPGQRAMIAEVARTFSRCREEGEPSKDGQNLSVI 76 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLK-FTA 111 + PTG GKT++YL+ GI +AR +KTL+VSTA V+LQ+Q+ +KD+P L +++ + + Sbjct: 77 QGPTGTGKTMAYLLAGIVLARSRKKTLLVSTATVSLQEQLVTKDIPQLARVLDNPPVYEL 136 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C RNL +L DL A P + E +L+GD WDG Sbjct: 137 AKGRGRYLCERNLLSLT-------DLQAGNAFWKHPPSASELDLLDRLRGDFPD-SWDGD 188 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RDH +++ D LW + SC + C Y CPFF+ + A++VVANH LV++ + Sbjct: 189 RDHLPVSVPDSLWSLIQNQGTSCTGKRCPLYSRCPFFLKKEAFSRADIVVANHDLVLSDL 248 Query: 232 E--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCM 287 +LP P+ LLV DE HHLP + S ++ W L ++ A Sbjct: 249 VLGGGILLPSPEKSLLVFDEAHHLPGKSLSHFRESLDLEGLAPWIERIPGLLERISAFFD 308 Query: 288 EQFRPKTIPP--LAIPERLNAHCEELYELIA-----------SLNNILNLYMPAGQEAEH 334 + R KT+ A+ L L E + ++ + +++ Sbjct: 309 VRERDKTVQAQAEALTNSLMTLGTWLEEHWEGKPAGSFSSETEQDGANGIFRGSREQSLW 368 Query: 335 RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG 394 RF G+ PD +++ + A +L +L + L+E T D+ R Sbjct: 369 RFPGGKFPDAMIDPSRIGASAARVLAERLQLERDKLAEATTGSDVRRNRERDAFFLDVGV 428 Query: 395 MFEAQSKLWRLASLAQSSGA----PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR 450 E RL SL + P +WAT + G + + LE +LWR Sbjct: 429 HLEKTLDAVRLLSLYEKVDPEGKAPFARWATMWKESGTFSHRLEASPVWPATLLEEVLWR 488 Query: 451 SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPS 510 + +TSATL SL SF GL G F++LDSPF QG + +P MR +P+ Sbjct: 489 RVSACCLTSATLMSLGSFKSFSSRCGLSMLTGVSFLSLDSPFPLDRQGVLSLPVMRSDPT 548 Query: 511 IDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPR 569 + E H E+ + G LVLF+S R M+ ++ + + +LVQG++ R Sbjct: 549 --DFESHTREIVESLPAVL--SPTGGALVLFSSRRQMEAVRKGLSPEWQNRVLVQGERSR 604 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 ++ LH +RV GE SVL GL SF+EGLDLKGDL + V I KI FP PV T EW Sbjct: 605 KDILALHEQRVRAGEASVLFGLSSFSEGLDLKGDLCTHVVIAKIPFPVPTEPVEETLSEW 664 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 ++S PF +LP A L+Q GRLIRS G V I+DKRLL KNYG LL +LP Sbjct: 665 IRSRGGDPFREIALPEAGLRLVQAAGRLIRSETDRGIVTIFDKRLLEKNYGVHLLRSLPP 724 Query: 690 FPIEQPE 696 F +E+P+ Sbjct: 725 FRLERPD 731 >UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6D5_DESAS Length = 957 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 166/730 (22%), Positives = 307/730 (42%), Gaps = 42/730 (5%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 L I L +Q P + R Q QM VA+TL + L EA TG GK+ Sbjct: 246 NLNQKQVVDILGPEGELAKQHPHYEHRPQQLQMSVAVAQTL--NKQSLLLTEAGTGTGKS 303 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVC 120 ++YL+P + + + ++ +VVST + LQ+Q++ KD+P+L+++ + GR Y+C Sbjct: 304 MAYLVPAVLWSAQNRERVVVSTHTINLQEQLWFKDIPMLQQMFGKSFRAALVKGRQNYLC 363 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 + + S+ A ++ GD +G + Sbjct: 364 LSRWSEVFSSTDNHSRWEALFY------SRILVWLTKTQTGDRSEINLNG--------AE 409 Query: 181 DDLWRRLSTDKASCLNRNCYYYR-ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD 239 D W ++S D C C++++ C A++ + +++++ NH+L+ + ++ E Sbjct: 410 YDYWSKISADSDRCKGNQCHWFQKACFVSRAKKTAENSDLIIINHSLLCSDLQVENR-IL 468 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWY------RLQLDLFTKLVATCMEQFRPK 293 P LV+DE HHL +VA + ++ +L + L A F K Sbjct: 469 PSYGPLVIDEAHHLENVATEHFGYMISESSIKRWLESTDKLAIKLSHNPAAEANNNFDQK 528 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 E + + L+ + + +N Y EA ++ A G + + + Sbjct: 529 IYAVRKSVEDIRHASGVYFNLLRT-EHSINDYAEEPVEAANQNAGGLCVSRLYKEAGQEQ 587 Query: 354 KLTE--MLRGLAELFLNDLSEKTGSHDI--VRLHRLILQMNRA-LGMFEAQSKLWRLASL 408 L E L ++ +++L + +I + + + L + + + Sbjct: 588 LLVEEDNLLTGFKILMDNLKKIMLKLEIWAAQYEKWVNTAKIFSLHLNLGTQLFASIEFI 647 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 S W + + ++ I + L L+ S +I+TSATL SF Sbjct: 648 LTHSDPNFVYWMEKNYFQSNTYITLRSSPIDIGKLLYEKLFASKKAVILTSATLSIAGSF 707 Query: 469 SRLQEMSGLKEKAGDRF-VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 +E GL + + +DSPFN+ +Q K+ + + E+ + E+A + Sbjct: 708 DYFKERVGLNLYTEEISELQIDSPFNYGKQAKLFLTSDLPSQNEVPEQFYHTELAN-IIE 766 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVELHRKRVAN 582 ++ + LVLF S R++++ + D ++LL D R L+E + Sbjct: 767 KLVNVSQGKTLVLFTSHRSLKQTYLRLKPVLEDKEILLLGHNIDGSRSALIEEFVR---- 822 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 +++VL G SF EG+D+ GD LS V I K+ F P++ E L + F S Sbjct: 823 NKKAVLFGTASFWEGIDIPGDSLSSVIIVKLPFWAPSIPIIEARLESLIKQGKNGFWEFS 882 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIV 702 LP A Q GRLIRS +G V++ DKR++ K YG+ L++LP+ ++ ++ + Sbjct: 883 LPQAVIRFKQGFGRLIRSSRDYGAVIVLDKRIIQKKYGRYFLNSLPLKHHQRGDMENLLT 942 Query: 703 KKKEKTKSPR 712 + + + Sbjct: 943 QMTDWLGKKK 952 >UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 Length = 744 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 228/716 (31%), Positives = 341/716 (47%), Gaps = 29/716 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVA----KTLAGEEGR---------H 49 LT K I Y+ + + +P F PRA QR+MIA VA +TL EEG Sbjct: 30 LTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGEPPKREGESI 89 Query: 50 LAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL-KKIIPDLK 108 IE PTGVGK+L+YL+ G +A+ K L+VS+A VALQ+Q+ +DLP L +K +L Sbjct: 90 AVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELT 149 Query: 109 FTAAFGRGRYVCPRNLTALASTEPTQQDL--LAFLDDELTPNNQEEQKRCAKLKGDLDTY 166 F A GRGRY+CP L L + Q L A + EE K + + Sbjct: 150 FALAKGRGRYLCPYKLYQLTQSNAQQNLLGFEAPAVLWDSKPKPEELKLLRDIADEFSAR 209 Query: 167 KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHAL 226 +++G RD IDD +W +++ D+ CL C ECPF++AR ++ +VVVANH L Sbjct: 210 RFNGDRDAWPEKIDDAIWLKVTNDRHGCLKAACPNRPECPFYLARDMLETVDVVVANHDL 269 Query: 227 VMAAMESEA--VLPDPKNLLLVLDEGHHLPDVARDALEMSAEIT-APWYRLQLDLFTKLV 283 ++A + +LP P+N +DE HHLP A A W +L T + Sbjct: 270 LLADISMGGGVILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQLTGKI 329 Query: 284 ATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQ---EAEHRFAMGE 340 A ++ + A L++ E + L + + L + E + G+ Sbjct: 330 AALTDKAELANLADEAAASLLDSLHEWQFHLAEEPSLSMGLSENDRRTNSEPTWLWEDGK 389 Query: 341 LPDEVLEICQRLAKLTEMLRGLAELFLNDLS--EKTGSHDIVRLHRLILQMNRALGMFEA 398 +P+ + A L + LS + D + RL + + E Sbjct: 390 IPEGLETTVSNTAIAARSLLKHVVGLNDALSATRREKEQDGALIDRLTGEFGLFIARIEQ 449 Query: 399 QSKLWRLASLAQ-SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 S +W L S P+ KW + + F+ I + L LWR ++ Sbjct: 450 ISAVWDLLSTVSIEGEEPLAKWI-ARRADDKNDYIFNASPISSASHLANSLWRRAAGAVL 508 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 TSATL+SL SF+ + +GL +AL SPF+ +QG++ IP + P E H Sbjct: 509 TSATLQSLGSFNLILRQTGLLWLPETTTLALKSPFDFEKQGELYIPSIYASPKDP--EAH 566 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLL-VQGDQPRYRLVELH 576 A + + K + + +G LVLF+S + MQ ++ L LL VQG+ P+ L++ H Sbjct: 567 TAAVIEWLPKLISPTEAIGTLVLFSSRKQMQDVALHLPGDYLPLLLVQGELPKAVLLQKH 626 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 + + G+ S++ GL SFAEGLDL G QV I K+ F D+P+ T+ W++ Sbjct: 627 HQAIEEGKASIIFGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGN 686 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 PF ++P A LIQ VGRLIR+ +G V I D R+ T+ YG++LL LP F Sbjct: 687 PFIEITVPEAGIKLIQAVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPPFKR 742 >UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3T5_DESAC Length = 850 Score = 507 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 171/742 (23%), Positives = 286/742 (38%), Gaps = 61/742 (8%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 A + A + L + + R Q +M VA+ + IEA TG GK+L+YL Sbjct: 128 DAVAHVLAAHGPLASHLGSYEERPEQLRMALAVAEAF--NQNGLATIEAGTGTGKSLAYL 185 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNL 124 IP I A + ++ + +ST + LQ+Q+ SKDLPLLK+++ + GR Y+C R L Sbjct: 186 IPAIMWALDNEQPVAISTNTINLQEQLISKDLPLLKEVMDREFHSVLVKGRNNYLCLRRL 245 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + Q+ + +L G RD +W Sbjct: 246 DSAHREPDLFQNEQSGELAQLHEWAAATNV---------------GSRDELTFIPSSAVW 290 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL------- 237 + + C C +Y C F ARR A+++V NHAL+++ + A Sbjct: 291 MEVCCEMDQCPRTRCPHYSRCFFHKARRRAAHADLLVVNHALLLSDLSLRAETENYSAAA 350 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL---------DLFTKLVATCME 288 P +V DE HHL D A + + Y L L +L++T Sbjct: 351 VLPPYSRIVFDEAHHLEDAATRNFSIRLSHLSFAYSLNRLVHPRKPEKGLLPRLLSTLAR 410 Query: 289 QF-RPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE 347 + + ++ R+ + +L L + + + + Sbjct: 411 ELPDTLSALYDSLYRRIETAALDCRQLRDDLGETFTGQRDKLLQTDESASANGFCWRITP 470 Query: 348 ICQRLAKLTEMLRGLAELF---------LNDLSEKTGSHDIVRLHRLILQMNRALGMFEA 398 C + + +G A L L+ L + ++ Q+ M Sbjct: 471 QCTETERWLVLQKGFAPLIKQCESLSNHLDQLIKACEQLPEKLFEQVSGQLTDIRAMSGR 530 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREGQLH---LWFHCVGIRVSDQLERLLWRSIPHI 455 + ++ S+G W E G+ LW + I V+ L++ ++ I Sbjct: 531 IQCMGSELAIVLSAGDSACTWIEINESRGRKRDKILWLNSAPISVAATLKQAVYDRFRSI 590 Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDN 513 + TSATL F + +GL R + LDSPF+ Q ++VIP V P+ N Sbjct: 591 VFTSATLTVNRQFHYFHQRTGLNLCPEKRRQQLCLDSPFDFASQARVVIPTDIVPPTHQN 650 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQPR 569 +AE +Q VLF + +++ + + L QG R Sbjct: 651 YAAMLAEQV----EQAVIASEGRSFVLFTAYSLLKKLYNELEPPLHARGFNCLYQGQSAR 706 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 + L+ K+ ++ +L G SF EG+D+ G L QV I ++ F P+ I E Sbjct: 707 HLLL----KKFRLDQKHILFGTDSFWEGVDVPGQALQQVIITRLPFRVPTEPIQIARSEH 762 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 L+ + PF ++P A L Q GRLIR G V+I D+R+++K YG+ L++LP Sbjct: 763 LEQMGVDPFMHYTVPQAVLRLKQGFGRLIRHRQDRGVVLILDQRVISKGYGRIFLNSLPP 822 Query: 690 FPIEQPEVPEGIVKKKEKTKSP 711 + ++ S Sbjct: 823 AQRLTGPAQTIQQQLRQFFCSA 844 >UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B8CRB2_SHEPW Length = 701 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 232/702 (33%), Positives = 356/702 (50%), Gaps = 28/702 (3%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L+A +K QI YK + +P+F R Q ++A+++KTLAGE + R + +EA TG+G Sbjct: 13 LSADVKTQIRTIYKGIASSLPNFRSRREQNYIVAEISKTLAGEYDKQRRIIVVEAGTGIG 72 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPL-LKKIIPDLKFTAAFGRGRY 118 K+L+Y++ I +A +K + ++TA VALQ+Q+ KDLP L+ D F GR RY Sbjct: 73 KSLAYILGTIPLALASKKKVCIATATVALQEQLLHKDLPFFLQHSGLDFTFGLVKGRQRY 132 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC L L + + Q + +Q + L D +W+G RD Sbjct: 133 VCLSKLEMLVGPDNSSQMA-----MWQSKPDQSQVDMLEGLLKDFKESRWNGERDTLTKP 187 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--SEAV 236 + D LW++++ DK SC + + CPF AR +I +V++ANH+L+ A +E + Sbjct: 188 LPDHLWQQIACDKHSCHKQLASHRN-CPFHKAREDIDTWDVLIANHSLLFADLELGGGVI 246 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 LPDP++L V+DE HHLP VARD A I L+ TK + Q + I Sbjct: 247 LPDPEDLYYVIDEAHHLPIVARDFSSAQATIRGAS--DWLEKLTKTTSKLQNQIKSNYI- 303 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAM--GELPDEVLEICQRLAK 354 +A + + H ++ L+ + + + E+RF G+LP +L + + LA Sbjct: 304 -IAPAQAMLDHIGDISGLLNQVAHFCDAQAKQFDNPENRFRFEHGKLPPALLILAENLAT 362 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRL--HRLILQMNRALGMFEAQSKLWRLASLAQS- 411 + + L L+E DI + L+ + L E KLWR+ + + Sbjct: 363 ASNVALKQFNKMLALLNEAIKDGDIPKHLSEALLSETGFMLQRIENLQKLWRMMAKQDNP 422 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 GAP+ +W + Q F I V LE LLW +++ SATLR+LN+F+ Sbjct: 423 KGAPMARWIEQLT-GKQSDYLFSASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHF 481 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 GL G R++ALDSPF+ + + +P+M EP+ DN + E+A VE Sbjct: 482 THQVGLSINDGSRYLALDSPFDFEQNATLFLPQMDTEPTHDN---YTDELAKQIIALVED 538 Query: 532 KKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 + LVLFAS M++ D V ++ LL+QG PR +++ H+ + + S++ G Sbjct: 539 EM--ASLVLFASYWQMEKVADLVENKIKTNLLIQGTLPRQEILKRHKALCDDTKPSIIFG 596 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 SF+EGLDL GD L+ + I K+ F SPV E++K PF ++P AS L Sbjct: 597 TGSFSEGLDLPGDYLTNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPDASRKL 656 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 +Q GRL+R +G + I D+RL+TK YGK LLDALP F Sbjct: 657 VQSCGRLLRKEQDYGRISILDRRLVTKRYGKSLLDALPPFRR 698 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 184/738 (24%), Positives = 318/738 (43%), Gaps = 47/738 (6%) Query: 4 TAALKAQIAAWY-----KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGV 58 LK Y + E+ P++ R Q M +V +L + RHL IEA TG Sbjct: 234 DDPLKDVSFEQYLDGIRQRFMEKYPNYEEREAQTTMFREVYDSLCSD--RHLLIEAGTGT 291 Query: 59 GKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGR 117 GK+L YLIP + +++ +VVST + LQ+Q+ +D+PLL++I+P D + + GRG Sbjct: 292 GKSLGYLIPALYYGIQQESKIVVSTHTINLQEQLRQRDVPLLREILPFDFRASIFKGRGN 351 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y+C R + + +DL+A +DD +T +Q GD + + Sbjct: 352 YLCLRKFES----KINAKDLVAPIDDAITA-SQMVVWLSETETGDQEELNFG-------- 398 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL 237 D W +++D SCLNR C +++ C + A+ E A+V + NH+++ ++++ L Sbjct: 399 NKGSDFWSTVASDADSCLNRQCPWFKRCYYHRAKHESNIADVCITNHSMLFTDVQADHRL 458 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSA---EITAPWYRLQLDLFTKLVATCMEQFRPKT 294 P L++DE HH+ +VA L M +T RL D + L+ + + + Sbjct: 459 L-PSYSHLIIDEAHHVEEVAGKHLGMQLNYFSLTHQTTRLFKDARSGLLPALRLRLQQED 517 Query: 295 IPPLA-----------IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 + + + + H ++L+EL+ + +A R P Sbjct: 518 DERVQAWTETIDTVIPVFQDVKEHWDKLFELLYAFVGESGEAGNDNGQAVCRLRSDTPPK 577 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW 403 ++ + L + + ++ D + LI +N + Sbjct: 578 GWDDVLTIENNVHTELSRVVKTVDKMATDIKDRLDDQSIQGLITDLNGVVRDLTRVKDDL 637 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 R + + W + + V + VS QL++ + II+TSATL Sbjct: 638 RTFLKMEQNSE--VYWIEASTTYRYRSVHLYAVPVDVSKQLQQYFFDVKDSIILTSATLS 695 Query: 464 SLNSFSRLQEMSGLK---EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAE 520 SF +E GL+ E + V L SPFN+ EQ ++IPR + Sbjct: 696 VHKSFQYAEEQLGLEGFEENNRLKTVQLPSPFNYREQALVIIPRNFPTLKGSAGDPQFIS 755 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVELH 576 M + MLVLF S R +++ + + + + +L QG R Sbjct: 756 MLVSSLADSAVETKGRMLVLFTSYRMLKQVYEPLKEALMGSGIQVLGQGIDSGNRT--KL 813 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 +R +VL+G SF EG+D+ G+ L+ + I ++ F P + P+V + E L+ + Sbjct: 814 TRRFTQQPETVLLGTSSFWEGVDIPGEALTCLAIVRLPFQPPNHPLVEAKSELLQKQKQN 873 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPE 696 PF S+P A Q GRL+R+ G V+IYD R++ YGK L +LP IE Sbjct: 874 PFMKLSIPQAVIRFKQGFGRLVRTAKDKGIVIIYDTRVIDTYYGKHFLYSLPGPKIETMH 933 Query: 697 VPEGIVKKKEKTKSPRRR 714 + + + + +E ++ Sbjct: 934 IDQMVPRMREWLQTEEEE 951 >UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=50 Tax=Gammaproteobacteria RepID=DING_PHOPR Length = 692 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 227/705 (32%), Positives = 359/705 (50%), Gaps = 34/705 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L + +K+ I Y+ L Q+ +FIPR Q ++A++AKTLAGE + R L EA TG+G Sbjct: 2 LHSQIKSDIKQCYENLGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHRMLVGEAGTGIG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRY 118 K+L+YL+ GI A K L++STA VALQ+Q+ +KDLPL +I P + F A GR RY Sbjct: 62 KSLAYLLGGIPFALFNNKKLLISTATVALQEQLINKDLPLFNRIYPKEFSFILAKGRQRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 C L A +T QQ + +++ ++ + +R K D KWDG RD Sbjct: 122 CCNHKLEACCATNNDQQ--VTLWEEKPKKSDLDLLRRMLKATRD---GKWDGDRDSWPTT 176 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA--MESEAV 236 I D +W ++ DK SC + +R CPF AR + +A+V++ANHAL+MA + + Sbjct: 177 IPDRVWPQIMADKHSC-HAGLPQHRSCPFAKAREHLDKADVIIANHALLMADIELGGGVI 235 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME--QFRPKT 294 LP+P+ + V+DE HHLP VARD ++ + L+ + + E +++ Sbjct: 236 LPEPEQTIYVIDEAHHLPKVARDFSSAASSLKGA--ATWLEKLNQTIGKLAELAEYKKAA 293 Query: 295 IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK 354 AI E + L ++ ++ ++ +RF GELP + + + Sbjct: 294 RFQDAILENIQHLIPTLRQVANNV-----DVGMFSKDGIYRFEHGELPAWLEQEAKGCKD 348 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRL--HRLILQMNRALGMFEAQSKLWRLASLAQSS 412 ++ + +SE+ ++I + + + + L E K+W L + + Sbjct: 349 ASKKALQSLGKIHDLISERLKDNEIQQRLGEQALAESGVYLQRLENLEKVWALMAQPKKD 408 Query: 413 -GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 GAP+ +W + + + + V +L++LLW I+ SATLR+LN F+ Sbjct: 409 KGAPLARWIEKNP-DNEGDYIIQVSPLEVGYRLDQLLWSRAAGAILVSATLRALNQFTYF 467 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 G+ E RF+AL SPF++ ++VIP + +EP D + + + + + Sbjct: 468 CRQVGIYEMDSTRFLALASPFDYQNNARLVIPALSLEPQADKFTDLLIKTLPEYLEGETA 527 Query: 532 KKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 LVLF+S M + D + + LLVQG++ R+ ++ H+ +G+ S+ Sbjct: 528 S-----LVLFSSYWQMNKVADELRPLAKKNKWELLVQGEESRHITLKKHKDNCKSGKPSI 582 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L G SF+EGLDL GDLL + I KI F SPV E+++S PF S+P AS Sbjct: 583 LFGTGSFSEGLDLPGDLLKNLIITKIPFGVPTSPVEEAHAEYIESCGGNPFMQISVPEAS 642 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 LIQ VGRLIR G VV+ D+R++ + YGK LLD+LP F Sbjct: 643 KKLIQSVGRLIRKEDDMGRVVLLDRRIINRRYGKALLDSLPPFKR 687 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 152/694 (21%), Positives = 282/694 (40%), Gaps = 27/694 (3%) Query: 19 QEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 Q + + RA Q +M+ + +T+ EE IEA TG GKTL+YL+P +A+E+QK Sbjct: 252 QNVMEGYEVRAGQTEMMTYIYETM--EERAFGLIEAGTGTGKTLAYLLPAAFLAKEKQKK 309 Query: 79 LVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 +++ST + LQ+Q+ K++P L++++P + GR Y+C + L + Sbjct: 310 VIISTQTIQLQEQLIKKEVPTLERLLPFPIHVVILKGRSHYLCLQKFARLLQEDHND--- 366 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 D Q GD++ + + W +++D SC + Sbjct: 367 ---AYDRTVSKAQILVWLLETKTGDVEELSLA--------SHSNRFWNDIASDAYSCNSS 415 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C ++ C + AR + ++A++++ NH+L++A + + L PK +LDE HHL D A Sbjct: 416 KCAWFSRCFYQHARNDARKADLIITNHSLILADILTSNQLI-PKYDYAILDEAHHLEDTA 474 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 + + + + + + + + E++ ++ Sbjct: 475 TEQFGQQLDYLSLTHLINRMGSKRGEGLLRQVYDEIYNDYRDTVEKIEETGTKVKFEWYE 534 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 L +LN Y+ + G ++ + E R L+ Sbjct: 535 LFLLLNDYV--INSNTNFNERGRATVKINAKENSWYVIEEAARRCKLYLEEWLANINRIV 592 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 DI+ + + L L + W + + + ++ Sbjct: 593 DILETIESNYNDAFTSFIDRVEGVYSSLIKLLLEQDDHMIYWIEADTKGPKQAIYIKGRP 652 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 I VS+ L L ++ +I+TSATL N F+ + GL + + +DSPF+ +Q Sbjct: 653 INVSESLADLFFQKKDSVILTSATLTVNNKFNYMIRRLGLSDF-YVKTKHIDSPFHWDKQ 711 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 K+++P E+ + + + MLVLF S ++ +Y+ ++ Sbjct: 712 VKLMVPTDMPLIQDAGEKAYAEATVMQIYR-IAEITKGKMLVLFTSYDMLKNCYNYLKEM 770 Query: 558 ---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIA 614 ++ QG R K +++L+G SF EG+D+ G LS + I ++ Sbjct: 771 LDDEYAIIAQGVHSGNRT--KLTKNFQQFNQAILLGTSSFWEGVDIPGSDLSIIVIVRLP 828 Query: 615 FPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 F P D PV + +K PF +LP A Q GRL+R+ G V++ D+R+ Sbjct: 829 FTPPDDPVFQAKSTEMKREGLNPFMKLALPQAILRFKQGFGRLVRTTHDRGAVIVLDRRI 888 Query: 675 LTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 YGK + +LP P+ + + E Sbjct: 889 TNTKYGKLFIKSLPEIPLVEKSLDELEDDILSTL 922 >UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG Length = 876 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 169/743 (22%), Positives = 281/743 (37%), Gaps = 59/743 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L+ +I A L +P + R Q +M V + + R IEA TG GK+L Sbjct: 155 LSFPEIERIFAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDD--RVAVIEAGTGTGKSL 212 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCP 121 +YL+P + A ++ +VVST + LQ+Q+ KD+P L++ + GR Y+C Sbjct: 213 AYLVPAVLWAIRNKERIVVSTNTINLQEQLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCL 272 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L + S D A + E +G R Sbjct: 273 RKLAGVKSEPSLFADDPAAGELEAIIA--------------WSEKTAEGCRSDLSFIPKP 318 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---- 237 + W ++ + C C Y C F+ ARR+ A+V+V NHAL+MA + Sbjct: 319 ETWEEVACEADQCGRIKCPLYARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRS 378 Query: 238 --PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK-----LVATCMEQF 290 P L++DEGHHL DVA L L + L+ Q Sbjct: 379 TAILPPFERLMVDEGHHLEDVATGHLSSQVSRQGILKLLGRLQNPRKAQRGLLPQLSAQL 438 Query: 291 RPKTIPPL---------AIPERLNAHCEELYELIASLNNILNLYM--------PAGQEAE 333 + L + E+L + +EL + + L + P E + Sbjct: 439 SREVPVELDDLYRDLAERLEEKLISRTQELAAGAVRAMDAIGLALLSHLKGKGPENGEKK 498 Query: 334 HRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRAL 393 R ++ + A+ L + G +L + Sbjct: 499 LRVTPSLFGSKLWQETDDEARELAADLNTFVRELKEFLTGCGRLPEAVQEKLSGLLVDLR 558 Query: 394 GMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP 453 G+ L V +W ++ + + + V+ L+R ++ + Sbjct: 559 GVTGRLEALAADLLFFIGRDGEVCRWFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFR 618 Query: 454 HIIVTSATLRSLNSFSRLQEMSG--LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSI 511 ++VTSATL +F L+ +G L ++ + L SPF++ Q + IP EP+ Sbjct: 619 TVVVTSATLAVGETFDYLEGRTGIALLDRGRVTELLLASPFDYERQAFVGIPADLPEPTS 678 Query: 512 DNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQ 567 ++ + + + + VLF S + R + + L + QG+ Sbjct: 679 RGFQEAL----EVALHRGLAISNGHAFVLFTSYDLLSRIHGRMAEALRRRGLTPMRQGEI 734 Query: 568 PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 R+ L+ RK +VL G SF EG+D++G L V I ++ F P++ Sbjct: 735 NRHHLLARFRKE----PNAVLFGTDSFWEGVDVQGKALELVVITRLPFRVPTEPILEARA 790 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 + + PF ++P A Q GRLIRS G V+I D R+L+KNYG+ L +L Sbjct: 791 DHIALRGGDPFMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRVLSKNYGRFFLRSL 850 Query: 688 PVFPIEQPEVPEGIVKKKEKTKS 710 P + E + + S Sbjct: 851 PPVRLADGGSGEVFGEMERFFSS 873 >UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damage-inducible protein G) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXS1_9BACT Length = 847 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 173/741 (23%), Positives = 295/741 (39%), Gaps = 62/741 (8%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + + L IP + R Q M+ V+ + IEA TG GK+L+YL+P Sbjct: 131 SNLLRPGGILSVTIPGYEYRESQVDMLTSVSDAFNNDT--VATIEAGTGTGKSLAYLLPA 188 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTAL 127 I + + ++ +V+ST + LQ+Q+ KD+P LK + IP+ K GR Y+C R L Sbjct: 189 IFWSVKNKERVVISTNTINLQEQLMYKDIPTLKIENIPNFKSVLVKGRNNYICLRKAQNL 248 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + E+K+ + DG + ++ ++D++W + Sbjct: 249 QFEGDM-------------LIEEREKKQLIHILSW-AEKTRDGSKADLNLLVNDNVWEMV 294 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-------SEAVLPDP 240 ++ C C +Y +C F+ ARR A+++V NH L+MA + ++ P Sbjct: 295 QSEADQCTRLKCNFYNKCFFYSARRNASSADILVINHHLLMADLVLRKETRGYDSTAILP 354 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA- 299 +++DE H+L VA + +S L + K + F I + Sbjct: 355 PFKRIIIDEAHNLESVATSNIGLSFSRMRILKPLGKLVNQKDNKKGLLPFLKNKIKDVDF 414 Query: 300 --------------IPERLNAHCE-------ELYELIASLNNILN-LYMPAGQEAEHRFA 337 P+ L+ E ++ S+N+ +N ++ G E + R Sbjct: 415 QCNKDITVDITEGIYPQLLDMRIEIYTCVTNTFSDIFESVNSYINNKFLENGVELKLRIT 474 Query: 338 MGELPDEVL-EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF 396 L + + ++ + + LN L D L Sbjct: 475 DELLSTPLWSDSIEKKIRHLCTEIHNFVILLNKLIAAIERLDKESRDILSSLFIDITSCK 534 Query: 397 EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 + S + +W + F I +S+ L+ L+ + II Sbjct: 535 TRLNTAKNDLFSFIRSEENLCRWIELRRYNDNFFIKFCNAPIDISNALKAYLFDNYRTII 594 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNE 514 +TSATL N+F+ Q+ +GL R + L SPF++ Q I IP +P ++ Sbjct: 595 LTSATLTIDNTFTFYQKNTGLHLLPEKRITELILSSPFDYKSQSMICIPTDISDP---DD 651 Query: 515 EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRY 570 + ++ K + + LVLF S R + D + L QG+ R+ Sbjct: 652 SYYKKDLVENLSKLI-AITDGRSLVLFTSYRLLNDIFDMLKPYFTGQGYTCLKQGEDNRH 710 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 L+E + N + S+L SF EG+D+KGD L V I ++ F + P++ E + Sbjct: 711 NLLETFK----NDKTSILFATDSFWEGIDVKGDALECVIITRLPFKVPNEPIIEARTEAI 766 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 + F SLP A L Q GRLIRS G V I+D+R+ TK+YGK + +LP Sbjct: 767 EMKGGNSFYDYSLPVAVLKLKQGFGRLIRSKEDRGVVFIFDRRIATKSYGKVFIKSLPKA 826 Query: 691 PIEQPEVPEGIVKKKEKTKSP 711 + + + K Sbjct: 827 KCIKKNTEHVFKELENFFKRR 847 >UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6VX61_MARMS Length = 707 Score = 499 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 241/715 (33%), Positives = 350/715 (48%), Gaps = 33/715 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 L+ LK QI Y+A + PRA QRQMI +A+TL EE I Sbjct: 2 LSDELKKQIQLAYRASLDAKSH-KPRAGQRQMIGAIARTLGNIKQGSEGERLEEKHVAVI 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKTLSY + I IA+ L++STA VALQ+QI K+LP LL+ K+T Sbjct: 61 EAGTGTGKTLSYCLAAIPIAKARGLKLIISTATVALQEQILHKELPDLLEHTELTFKYTL 120 Query: 112 AFGRGRYVCPRNLT-ALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 A GRGRY+C NL L+S E D+ A L ++ ++ ++ L WDG Sbjct: 121 AKGRGRYLCLNNLEGFLSSEEQAMDDMFAGLFEQHLHSDDINTVLYQEMDTALQKGDWDG 180 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 +D+ + D WRRL+TD C NRNC Y CPFF AR EI+ A+V+VANH LV+A Sbjct: 181 DKDNWAGIVRDQDWRRLTTDHQQCTNRNCANYSACPFFKARAEIEVADVIVANHDLVLAD 240 Query: 231 ME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME 288 + A+L PK + + DEGHHLPD A + L K + + Sbjct: 241 LSLGGGAILTPPKETIYIFDEGHHLPDKAIGHFRHEVRLQQSI--TWLRQLEKNLVNLKQ 298 Query: 289 QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMP----AGQEAEHRFAMGELPDE 344 + + ++ + + I L Y+ + +HRF G++PDE Sbjct: 299 ELTDDVSVTGQLLLKIPQQIQSIVNFIQYAQQGLAPYIQGLGLDQENNQHRFEFGQIPDE 358 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD----IVRLHRLILQMNRALGMFEAQS 400 + ++ L + L E ++ + + + LG E Sbjct: 359 LRQLAYSLQTSYQKLFNNIESIQDECKKTKQNEGMGVTPETAETWQPILGVILGRLEQCI 418 Query: 401 KLWRLASLAQSSG-APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 LW L S P +W + + + I ++ L + LW +VTS Sbjct: 419 GLWCLYSTVDDQNFPPNARWLVLSGQGMEQDIELGGSPILAANTLRQQLWDKCFGAVVTS 478 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 ATL +LN F R SG+ ++ ++ + SPFN E G +V+P M EP+ EQH A Sbjct: 479 ATLTALNQFHRFNMRSGVPRES--EYLRVISPFNFQENGLLVVPDMEHEPNRV--EQHTA 534 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRK 578 E+ + K V G LVLF+S R M+ V+ L+ +LL+QG+Q + +++ H+ Sbjct: 535 EIVTYLDKHV--NTEKGSLVLFSSRRQMEEVAQSVSVGLQEILLMQGEQSKRVILDSHKS 592 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 R+ G+ S+L+GL SFAEG+DL GD L+ V+I KI F D PV T EW++ PF Sbjct: 593 RIDEGKGSLLLGLASFAEGVDLPGDYLTCVYIAKIPFAVPDDPVEATLAEWIQKRGGNPF 652 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 ++P AS L+Q GRL+RS GE+ I DKRL TK YG +L+++LP + + Sbjct: 653 MEITIPDASLRLVQATGRLLRSEKDSGEIHILDKRLRTKRYGSQLINSLPPYKYQ 707 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 498 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 175/743 (23%), Positives = 291/743 (39%), Gaps = 65/743 (8%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L + I + L + P + R Q M +V +++ +HL +EA TG GK+L Sbjct: 247 LDESYIESIFSPGGELSKTFPGYEVRDQQIDMALEVVRSINN--SKHLVVEAGTGTGKSL 304 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP----DLKFTAAFGRGRY 118 +YLIP A + + +V+ST + LQDQ+Y+KD+P ++K++ DL+ + GR Y Sbjct: 305 AYLIPSAIFALKNNQRVVISTDTINLQDQLYNKDIPAVRKLLGGKGKDLRVSLVKGRNNY 364 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C + + F + + GD+ Sbjct: 365 LCLNRWERFLRSGINTPEEAKFA-------VKVLLWLQTTITGDVSELPLTSD------- 410 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYR--ECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 + W+R+S + +C R C + +C F AR E + + +VV NHAL+++ + S Sbjct: 411 -EKQFWQRVSATEETCTTRVCRNRKGRQCFLFRARVEAESSHLVVINHALLLSDLASNNS 469 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL-------------------- 276 + P L++DE H L D A + L + A L Sbjct: 470 VL-PNYDYLIIDEAHRLEDQATNHLGFEVDSRALHELLNRVMDNSNPVRPEGISARLPVH 528 Query: 277 DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRF 336 ++ +EQ + ER A +E + + L E Sbjct: 529 MQGSRASNASVEQVTNIAMRLAQRTERTRARVDEFFASLGRLLPASMGMQNGYDEHLRLT 588 Query: 337 AMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF 396 A ++ + L LR L + + G + L Sbjct: 589 AEVRGGEQWEGVLLAWENLKLTLRELVDEVHHCGELLEGLEGLHIAEYEELLAEVQAIEV 648 Query: 397 EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 Q + + S+ + W + R G + H + V L+ L+ +I Sbjct: 649 FLQDYIHEMNSIITAPTENDVTWISYSHRYG--TITLHKAPLDVGGILQEELYSKKKAVI 706 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 +TSATL + +F + GL E + L SPFN+ E +++P EP + Sbjct: 707 LTSATLTTDRNFDYVTGRLGLYEFQQ---LMLGSPFNYQETALLLVPTDIPEPGTAGYQD 763 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRA----MQRFLDYVTDLRLMLLVQGDQPRYRL 572 + + A E +VLF S A + + +++L QG+ R+RL Sbjct: 764 AVESLVAELVLAAE----GRTMVLFTSHSAVQATQKAIYRELARHDILVLSQGEGSRHRL 819 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 ++ + + R+VL+G +SF EG+D+ GD LS + I K+ F + PV + E Sbjct: 820 LQQFK----SNPRTVLIGTRSFWEGVDVVGDALSLLIIAKLPFEVPNEPVFVARSETFA- 874 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 F ++P A L Q GRLIRS G VVI DKR+LTK YG + L +LP + Sbjct: 875 ---DAFNDYAIPQAILRLKQGFGRLIRSKTDRGVVVILDKRVLTKRYGVKFLTSLPNCKM 931 Query: 693 EQPEVPEGIVKKKEKTKSPRRRR 715 ++ + K R Sbjct: 932 QKGPARLLAPEVKRWLGQNSEER 954 >UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassified Gammaproteobacteria RepID=A4A9L6_9GAMM Length = 707 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 222/716 (31%), Positives = 342/716 (47%), Gaps = 37/716 (5%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLA 51 AL+ A K I Y A+ + PR QRQMIA+VA TLA E Sbjct: 3 ALSPADKDAIREAYTAITDA-RGLTPRWGQRQMIAEVANTLARLSPSMGAADTEGSPIAV 61 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFT 110 IEA TG GKT++Y+IP + +AR K LV++TA VALQ+Q+ KDLP +KK D F Sbjct: 62 IEAGTGTGKTIAYVIPALVMARALNKRLVIATATVALQEQLVHKDLPDIKKGSGLDFSFQ 121 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQ-KRCAKLKGDLDTYKWD 169 A GR RY+C L L + E + DE++P + + + L WD Sbjct: 122 LAKGRRRYLCLSQLDRLMARESGGGQTMGLYPDEVSPALARDALESYGLMLDALARGDWD 181 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 G RD+ I+D W ++ D+ C R C R C F+ AR +QEA+VVV NH LV++ Sbjct: 182 GDRDNWSAPINDADWFPVTADQGQCTGRRCPNIRNCSFYRARDGLQEADVVVTNHDLVLS 241 Query: 230 AME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVAT 285 + A+L P++ + + DEGHHLPD A + + T W K Sbjct: 242 DLALGGGAILTPPEDTIYIFDEGHHLPDKALNHFASFCRLPSTLSWLGDSRKALAKGAPL 301 Query: 286 CMEQ--FRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 P A+ + L +++ E A++ + E + RF G +P Sbjct: 302 LATLPGLSTVLEPLPALFDDLQLRLQQIAEKAAAIMASAGDF-----EEQLRFEGGVVPP 356 Query: 344 EVLE----ICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 ++ + + + A+LT L L + L +++ + L + + L E Sbjct: 357 DLQQATASLASQWARLTGRLITLEAGIDDALEDESFASVRDELEAWQMAVGGMLVRAEGV 416 Query: 400 SKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 L++ A+ A P +W R + +L + HC I +D L LW +I+T Sbjct: 417 LSLFQDFAADAAEESPPRARWLKRRADDEELAIDLHCSHILAADILREQLWDRAAGVILT 476 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SAT+ +L SF R + SG+ E R+ + SPF++ + + +P M+ EP + H Sbjct: 477 SATMTALGSFDRFRARSGVPEDG--RYKIVASPFDYGK-ATLHVPAMKSEPG--DAPAHT 531 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHR 577 E+ +++ G LVLF+S R M D + + R +L Q D + ++ HR Sbjct: 532 RELIELLPDLLDA--GEGSLVLFSSRRQMNDVYDGLPVEWRSRILRQDDYSKQEILRRHR 589 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 + + +G +V+ GL SFAEG+DL G V I K+ F D+PV EWL++ R Sbjct: 590 ETIDDGRGAVIFGLASFAEGVDLPGGYCQHVVIAKLPFAVPDNPVDAALAEWLEAQGRNA 649 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 F S+P A+ L+Q GRL+R+ G V + D+R++T+ YG+ +LD+LP F Sbjct: 650 FMEISVPDAALKLVQASGRLLRTETDVGRVTLMDRRVITRRYGRAILDSLPPFQRR 705 >UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteobacteria RepID=Q482M5_COLP3 Length = 712 Score = 497 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 218/715 (30%), Positives = 344/715 (48%), Gaps = 33/715 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L+ LK I YKA+ E + F PR Q +IA++AKTLAGE + + + IEA TG G Sbjct: 2 LSDKLKQAIRQAYKAIGENLTHFNPRKQQTLLIAEIAKTLAGEYSKDRKIITIEAGTGTG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRY 118 K+L+Y + I +A K + +STA VALQ+Q+ KDLP LKK + FT A GR RY Sbjct: 62 KSLAYSLGAIPLALARDKKVCISTATVALQEQLVDKDLPFLKKYAGLNFDFTLAKGRQRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC + LT +T + A P+ + + + K+ L W G D + Sbjct: 122 VCRQKLTLAVTTGSGNEPAQAGFTFAEKPDAK-DIRTLNKMHKALLDGSWLGDIDSWETH 180 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME--SEAV 236 + +W ++ +DK SCL + CPF AR + +A V+V NH+L++A +E + Sbjct: 181 LPQHIWHQVQSDKHSCLKNLSE-HTHCPFHKARETMDQAHVLVVNHSLLLADLELGGGKI 239 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 L P++ ++DE HHLP V RD S + L T + + + P Sbjct: 240 LSPPEDTFYIIDEAHHLPKVTRDFSSASITLKGSIEWLTKLRDTGDKMAKLIKSKNAISP 299 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYM---------------PAGQEAEHRFAMGEL 341 L + + E+ +++ + N+Y E +RF G + Sbjct: 300 ALKLGDDCQDLLVEMQKVLNFIEANANVYFLENESSAQNNNFTKNSKNDEQVYRFENGII 359 Query: 342 PDEVLEICQRLAKLTEMLRGLAELFLNDLSE--KTGSHDIVRLHRLILQMNRALGMFEAQ 399 P + + L L++ N L E K G + L+ + L E Sbjct: 360 PQTLKNWAEDLQSLSKKSLSHLNKLYNGLIEAVKDGDTQMYVAEPLLAEAGFMLQRLENL 419 Query: 400 SKLWRLASLAQSS-GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 LW + + + S GAP+ +W + + + I V LE +LW ++ Sbjct: 420 QSLWFMYAKSDSDKGAPMARWLEKITLK-RQDYLLSASPIEVGFTLENMLWSQCEGAVLC 478 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SATLR+LNSF + GLK G ++ +DSPF++ ++VI +M + + + Sbjct: 479 SATLRALNSFDHFRFQVGLKNNDGSQYQQVDSPFDYQNNSQLVIAKMD---NEASAPEFT 535 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHR 577 E+ A K ++ LVLF+S M + + D +L ++VQG+ R +++ LH+ Sbjct: 536 DEVIAKLPKYLKQ--GNASLVLFSSYWQMNKVALALREDHKLEIMVQGELSRQQIIALHK 593 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 KR + + S++ G QSF+EGLDL GD L+ + I K+ F SPV + E++ + P Sbjct: 594 KRCDDNKESIIFGTQSFSEGLDLPGDYLNNLIITKLPFSVPTSPVEQAQAEYVTAKGGNP 653 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 F S+P S L+Q GRL+R+ G + + DKR++TK YGK+LLD+LP F Sbjct: 654 FMTLSVPDTSKKLVQACGRLLRNEMDEGVITLLDKRVVTKRYGKQLLDSLPPFSR 708 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 169/714 (23%), Positives = 288/714 (40%), Gaps = 37/714 (5%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 I + +++ IP F R+ Q M+ V ++ +EA TG GKTL+YLIP Sbjct: 237 TDIIENEELMKQSIPGFELRSTQMDMMKFVEDVFKHDQ--IGLVEAGTGTGKTLAYLIPA 294 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + A + + +V+ST + LQ Q+ +K+ ++K I P + + GRG Y+C + L L Sbjct: 295 VIHAVKHDQPVVISTETIQLQSQMLNKEWAVIKDIFPFPVHASLLKGRGHYLCLQKLENL 354 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + + D Q GD++ + + W + Sbjct: 355 LAEDTND------HYDRAVAKAQLLIWILETDTGDVEEVNLA--------STNYRFWMDV 400 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 S+D SC C ++ + A+++ ++A+++V NH+L++ + P L+L Sbjct: 401 SSDGISCTTPKCPWFTRDYYQRAKQQARDADIIVTNHSLLLTD-IRLSHQIIPSYDSLIL 459 Query: 248 DEGHHLPDVARDALEMSAEITAPWY--------RLQLDLFTKLVATCMEQFRPKTIPPLA 299 DE HHL D A + + Q L L R K Sbjct: 460 DEAHHLEDTATRQFGHQQDYISVIQLVNALANDEQQSFLSGALYKKLSSSLREKYQELQR 519 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE--ICQRLAKLTE 357 I E L+ +L+ + + AM + + ++ I + Sbjct: 520 ISESLHERWNQLFMELHEYGTVGKAEKADTSRRSKVIAMDDHTWKPVQEAIQETDGAFRH 579 Query: 358 MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 ++ +L +E + L R I ++ A FE + L S Sbjct: 580 LITSFRKLLFEIENEADEKGYLNSLERDIENLSTASQAFE--DEYETFYHLYHSQDEKQV 637 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 W EER + + + VS+ L L+ S +I+TSAT+ +SF + E GL Sbjct: 638 IWMELEERGPRQSITIRSAPVDVSETLADQLFSSKKRVILTSATMTVKSSFDYVIERFGL 697 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 + L SPF + +Q + +P ++ + AE A+ ++ M Sbjct: 698 TDFDLA-VKQLPSPFQYEKQVGLFVPEDMPMIQGTSDRAY-AEACAYHIFRLSGATEGRM 755 Query: 538 LVLFASGRAMQRFLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 LVLF S +++ V D+ ML+ QG Q R + K +RS+L G SF Sbjct: 756 LVLFTSYDMLRKTYYAVRDMLDDTYMLIAQGVQTASR--QKLIKHFQQFDRSILFGTSSF 813 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+ GD LS + + ++ F P + PV E +K + F +LP A Q Sbjct: 814 WEGVDIPGDNLSAIVMVRLPFSPPNDPVFQARSEAVKEQGKNAFMHLALPQAVLRFKQGF 873 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 GRLIRS G V++ D+R++T YG +L + + ++ E I + Sbjct: 874 GRLIRSSTDRGAVIVLDRRMVTTRYGHFFAKSLQDVAVNRMDMDEIIKELPSWL 927 >UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella marisrubri RepID=Q1MXU1_9GAMM Length = 707 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 219/716 (30%), Positives = 339/716 (47%), Gaps = 41/716 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 L++ K I Y E PR Q+QMIA +AKTL G + + + Sbjct: 2 LSSHAKETIQRAYSQFLEA-RSLKPRYGQKQMIAAIAKTLGGIQSDDEGKRVNDKQVCVV 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTA 111 EA TG GKTL+YL+ I +A + K ++VSTA VALQ+Q+ SKDLP + K + ++ Sbjct: 61 EAGTGTGKTLAYLLSTIPLAEDLNKKIIVSTATVALQEQLISKDLPDVAKYSGLEFRYAL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L + Q + ++ ++ K + T +WDG Sbjct: 121 AKGRGRYLCVHKLDQELKDQRMQDASMDMFGGADATDD--QKGLFQKFLDEFLTGRWDGD 178 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA- 230 RD+ I+ + W ++ C NR C ++ CPFF AR+ +++AEV+VANH LVMA Sbjct: 179 RDNWPETIEYEDWSMVTATHRECSNRRCPHFNACPFFTARKSLEDAEVIVANHDLVMADI 238 Query: 231 -MESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 + A+LP+P + V DEGHHLPD A ++ K ++ ++ Sbjct: 239 SLGGGAILPEPAQSIYVFDEGHHLPDKAISHFAGQVKLNQEE------NLLKQISKAVDT 292 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLN-------NILNLYMPAGQEAEHRFAMGELP 342 + P+ + + + E++ E+ + L + L + HRF MG +P Sbjct: 293 LGKQCGTPMGLLQIVTQFPEKIGEIHSQLGFARHIILDYLGDQAEVEGISTHRFRMGVVP 352 Query: 343 DEVLEIC----QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA 398 D ++E+ + L + + + E L++ G + R M L E Sbjct: 353 DALIELAGELNKTHNSLYQYIDKIVEALKASLNKDDGEYRQADAERWFPIMGMLLARLEM 412 Query: 399 QSKLW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 LW A P +W R E + + + I ++ L + LW +V Sbjct: 413 AGLLWLSFAQQDHEDNVPTARWLQRLITEYEDDIALYSSPILAAELLAKNLWSRCYGAVV 472 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 TSATL +L F RL+ +G+ + + SPF++ G+I++P VEP + + Sbjct: 473 TSATLTALGRFDRLRMKAGIAKDNYFE--RIQSPFDYPNLGEILVPNDAVEPGH--GDDY 528 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELH 576 +++ ++ + LVLF S R M + D+ ++ Q + + +++ H Sbjct: 529 TQQVSDLLESHLDE--NESTLVLFTSRRLMNDVKFQLPFDVSDHVITQDEFSKQEVLKQH 586 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 R ++ G S L GL SFAEG+DL GDLL V I ++ F D PV T EWL+S R Sbjct: 587 RDKIEAGLPSYLFGLASFAEGIDLPGDLLQHVIIVRLPFSVPDDPVDATLAEWLESKGRN 646 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 PF S+P AS LIQ VGRLIR+ G + + DKRL++K YG LLD LP F Sbjct: 647 PFMEISVPDASVRLIQAVGRLIRTEQDTGRITVLDKRLVSKRYGSLLLDGLPPFRR 702 >UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium RepID=C6JKU1_FUSVA Length = 832 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 170/721 (23%), Positives = 275/721 (38%), Gaps = 47/721 (6%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 L + F R Q M + L E+ + +EA TG GKTL+YLIP + Sbjct: 130 YFEKTGLLSQTFKGFEYRDEQLHMAKHIENGLNDEKK--VIVEAGTGTGKTLAYLIPSVE 187 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALAS 129 A + +K +V+ST + LQ+Q+ +KD+P+ KK++ D ++ GRG Y+C R LA Sbjct: 188 WAIKNKKRVVISTNTINLQEQLLNKDIPIAKKVVQGDFRYILVKGRGNYLCNRKYFNLAL 247 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 E + + K+ K G + +D+ +W + Sbjct: 248 GENVNFEEFSNSQKTQFKEIIIWGKKTEK-----------GDKSELPFEVDNSVWELFQS 296 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME-------SEAVLPDPKN 242 + C C Y EC F +R E + A++++ NH + + + + P+ Sbjct: 297 ETDICAGAKCPYKGECFFLKSREEKKNADILITNHHMYFSDLAIRKEIGFNTEYSILPEY 356 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFT----KLVATCMEQFRPKTIPPL 298 L+V DE H++ VARD A + + T K + L Sbjct: 357 GLVVFDEAHNIEKVARDYFSYEASKYSFTKIMNQIFATEGKKKNTGSLDILLNYIKNTSL 416 Query: 299 AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 L +E+ SL Y E + MG + + Sbjct: 417 DSRNILEKEIKEIKIKHKSLFLEGREYFNHIIEVFSKGQMGTFTFRAKKEEMEHSPFLSS 476 Query: 359 LRGLAELFLNDLSEKTGS-----HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS-S 412 L E F ++ + +I +N + + + Sbjct: 477 LIDFREKFTSEYNSYMRKVRSLIKEIRDEEDEQGTINDFIKYTDRLENFFNNFRFINDFD 536 Query: 413 GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ 472 W R+ +++ ++L++ L+ ++ II TSAT+ + FS + Sbjct: 537 DEEFIYWIEVNSRKSNS--KLVATPLKIDNELQKNLYINLKQIIFTSATIAIGSDFSYFK 594 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 E GL+E D+ + SPF++ +Q K+ IP PS N I+E K Sbjct: 595 ESIGLEEDTLDKVIH--SPFDYDKQMKVYIPDDIPNPSDRNFVDEISEFLKALL----IK 648 Query: 533 KHLGMLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVELHRKRVANGERSVL 588 VLF S A+ + D + L + G PR LV ++ NG VL Sbjct: 649 SKGKTFVLFTSYSALNYVYYLLRDDLEANGIELYIHGMAPRTHLVNMYI----NGRNPVL 704 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 G SF EG+D+KG LS V I K+ F PV E + + + F +P A Sbjct: 705 FGTDSFWEGVDIKGKQLSSVIIVKLPFKVPSDPVTEAIIENITAQGKNSFIEYQIPEAVI 764 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 Q +GRLIRS G V I D R++ K YGK ++++P I + + Sbjct: 765 KFKQGIGRLIRSKTDHGTVTILDNRVINKRYGKYFMESIPTRNIRIVGKSAVLKDIEADI 824 Query: 709 K 709 K Sbjct: 825 K 825 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 178/719 (24%), Positives = 295/719 (41%), Gaps = 45/719 (6%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + L +P F R+ Q M+ V K L G+ + + +EA TG GK+L+YL+P I Sbjct: 237 AVLGPEGILATTLPRFRYRSQQCDMMEQVTKGLNGD--KTVLVEAGTGTGKSLAYLVPAI 294 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKI-IPDLKFTAAFGRGRYVCPRNLTALA 128 A A++ + +++ST + LQ+Q+++KD+PLL K+ + K GRG Y+C R + Sbjct: 295 AWAKQNHERVLISTHTINLQEQLWNKDIPLLAKLPEYEFKSAIMKGRGNYICLRRWHSFM 354 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + D AFL + GD + D + W R+ Sbjct: 355 KEDNHTPDEAAFL-------AKILIWIYQTNTGDKGELVLNYS--------DFEYWYRVC 399 Query: 189 TDKASCLNRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 ++ CL C Y++E C F A+R+ + A++V+ NH+L+++ ++ + P L++ Sbjct: 400 SESDGCLGNRCQYFKEKCYFMAAKRKAERADIVIVNHSLLLSDANADN-MILPSYGPLII 458 Query: 248 DEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVA----TCMEQFRPKTIPPLAIP 301 DE HHL + A D L + W + L +KL T ++ + Sbjct: 459 DEAHHLENCATDHLGRAVTRVGVLRWLAVATKLLSKLEKIAFLTIDGRWEKLLLQSSETK 518 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI-CQRLAKLTEMLR 360 +R +E+ S ++ RF G D + I A+L +L Sbjct: 519 QRTREAATSFFEMALSWIKSIDRNGE--GRCSMRFDRGGNIDGIPSIPVAVDAELDNLLV 576 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA--QSKLWRLASLAQSSGAPVTK 418 L L + + + + R L + + Q L + + Sbjct: 577 NLRTLCQALVKISDQLEEGTVITGGGPGIIRDLAAWASVGQELSDNLEWICRHQEESQVY 636 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W + F I V L L+ +++TSATL +F GL Sbjct: 637 WVE--GGGDSPEVVFRSAPIDVGPLLYEKLFSENRPVVLTSATLSVDGNFKHYINSVGLD 694 Query: 479 EKAGDRFV--ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 + + L+SPFN+ EQ + + R + P + +++ E++ + Sbjct: 695 FLPQENILEKHLNSPFNYNEQAILCVARDILPPGQVSNKEYHDELSKAIF-HISMAAEGR 753 Query: 537 MLVLFASGRAMQRFLDYVTDL----RLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGL 591 LVLF S R+++ + D + LL D R RLVE + G R+VL G Sbjct: 754 SLVLFTSHRSLRETYQRLKDQYENEDICLLGHELDGSRRRLVEQFME----GRRTVLFGA 809 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 SF EG+D+ G+ LS V I K+ F P + PV + L R F +P A Sbjct: 810 SSFWEGVDIPGEALSCVIIVKLPFAPPNHPVTEARLQKLSRQGRNGFMEHQIPQAVIKFK 869 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 Q GRLIR G VV+ D RL+ K YG + ++LP+ + K + + Sbjct: 870 QGFGRLIRGPEDRGVVVVLDGRLVEKRYGYKFFNSLPIAQHIRDSWLGISKKARFWLTT 928 >UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB0_SEBTE Length = 832 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 186/741 (25%), Positives = 325/741 (43%), Gaps = 61/741 (8%) Query: 1 MALTAALKAQIAAWYKALQ---EQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTG 57 ++L +K I ++ L ++ PDF R Q +M D+ K+L E + IEA TG Sbjct: 109 VSLKKHIKIDIDKYFGDLGIIRKKYPDFEIRDEQYKMSKDIEKSL--NENKKALIEAGTG 166 Query: 58 VGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRG 116 GKTL+YLIP + A E ++ST + LQ+Q+ +KD+PL+K++I D K+T GRG Sbjct: 167 TGKTLAYLIPTLEYALENNLKAIISTNTINLQEQLINKDIPLVKELIGQDFKYTLVKGRG 226 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 Y+C R L E + L + + G R+ Sbjct: 227 NYLCKRKLQNAIMEESDDSEDKEILLNLQK----------------WNETTKYGDRNELR 270 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 I ++W +++ + C N C Y+ C FF AR+EI +++++V NH + A + + Sbjct: 271 YGISFEIWEKVNCELDLCTNVKCPYFSSCYFFNARKEIGKSDLLVLNHHMFFADLSIRSE 330 Query: 237 L-------PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK-------- 281 + P +L+ DE H++ D AR + + + Sbjct: 331 IGFNTDYSILPNYDILIFDEAHNIEDTARSYFTSEVSKYSFGKLMGNIYNKRVRNYNKSG 390 Query: 282 -------LVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH 334 + + + + I + E + + ++I + L + ++ E Sbjct: 391 IFVRALIYLKDNLSEEEYEIIDKVKEEEIIENLNKYYDKIIEIFDRFLLGFSKDSEQMEI 450 Query: 335 RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG 394 + + + + + + KL + L + + L++ T D RL + Sbjct: 451 KKRFDKDYIKSSSLWKEIMKLRKESVHLYSIMIKGLTKLTNEIDKFRLEDENGIIFDFKK 510 Query: 395 MFEAQSKLW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP 453 E L + S W R+G + + V+D LE L+ + Sbjct: 511 YIERVKVFMKDLLYILDSDQEDHVYWTNINLRKG--SIRIYATPFEVADDLEHNLFNKMD 568 Query: 454 HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 I+ TSATL F ++ GL++K + +DSPF++ +Q K+ IP +P N Sbjct: 569 RILFTSATLAVEQKFDYYKKNIGLEKKGIIEEI-IDSPFDYEKQMKVYIPDDTKDP---N 624 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPR 569 + +++ F +K V + K +LF S ++ + + + LL QG+ PR Sbjct: 625 SLEFFSDVYDFIKKLVINTK-GRCFLLFTSYSSLNFIYNKIRGELEKMGYTLLKQGELPR 683 Query: 570 YRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 + ++EL + R ++++L G SF EG+D++GD L V I K+ F + PV E+ Sbjct: 684 HEMIELFKIR----DKAILFGTDSFWEGIDVQGDSLKSVVIVKLPFKSPEDPVTEAIIEY 739 Query: 630 LKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 ++ N+ PF +P A Q VGRLIRS G V I D R++ K YG++ L +LP Sbjct: 740 MRKNNQNPFMNYQIPQAVIKFKQGVGRLIRSKTDTGIVTILDNRVIKKAYGEKFLKSLPK 799 Query: 690 FPIEQPEVPEGIVKKKEKTKS 710 I + E I+K++++ KS Sbjct: 800 TSIIRGN-REYILKEEKRVKS 819 >UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW80_HALOH Length = 822 Score = 491 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 167/729 (22%), Positives = 312/729 (42%), Gaps = 54/729 (7%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 + L + +L + + D+ R Q +++ +V + E IEA TG GK Sbjct: 119 VQLDIDEIIEFFEPGGSLSQFLNDYEYREQQLEVVREVINSFNNHE--FTLIEAGTGTGK 176 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 + +YL+P + A++ +KT+VVST + LQ+Q+ KDL LLKK + D K GR Y+ Sbjct: 177 SFAYLVPALFWAKKNEKTVVVSTNTINLQEQLIYKDLVLLKKALSFDFKAVMVKGRSNYI 236 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C R + L D ++ E+Q + K+ L+ G + + + Sbjct: 237 CKRKIKHLEQELNNYFD-----------DDPEKQVQFYKVLDWLEE-SKSGSKSELNFVV 284 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA---- 235 D+++W ++++ CL NC ++ C F AR+E+ A++++ NH L+++ + ++ Sbjct: 285 DNEIWNEIASETDLCLRTNCPFFDTCYFMKARKEVFSADILIVNHHLLLSDIMLKSEYSE 344 Query: 236 --VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK----LVATCMEQ 289 P+ L++DE H+ ++A L L + K L+ + Sbjct: 345 RDGGILPRYSNLIIDEAHNFDEIASRHLGRPFYYKLLHKYLNKVYYPKNRLSLIPRIRNR 404 Query: 290 FRPKTIPPLAIPERLNAH-----CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 F + ++ + + E LN ++ E R + E Sbjct: 405 FSATNLKNKKEVLKIIDTEIVPQVKRVEEQSHEYFQKLNEFVNQDGEGVIRLTQDIIEGE 464 Query: 345 VL-EICQRLAKLTEMLRGLAELFLNDLSEKTG--SHDIVRLHRLILQMNRALGMFEAQSK 401 +I L L L N E S DI LI+++ + + +K Sbjct: 465 AYSKIVDSGDTLLGNLNNLGIYLNNLYEEFMTLNSSDISNFEELIIELEAYINRCQHFAK 524 Query: 402 LWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSAT 461 ++ W ++ L++ ++VS+ ++++LW ++ ++I+TSAT Sbjct: 525 SLEF--NIKAEEENYVFWIE---KDYNLNVKQENAPLKVSNIIDKILWETMDNVILTSAT 579 Query: 462 LRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEM 521 L ++F+ + + G+ + + + ++SPFN+ EQ ++I + ++ Sbjct: 580 LTVNDNFNYFKTILGINKCSQ---LKIESPFNYSEQATLIISDDIPPANSKKYLPVATDI 636 Query: 522 AAFFRKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPRYRLVELHR 577 + LVLF S + + D +++L QG PR ++E + Sbjct: 637 LKEMLLLLR----GSTLVLFTSYSMLNYCTKKIEPVLKDDGIVILPQGRYPRKYILETFK 692 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 V+ G SF EG+D+KGD L + + K+ FP PV E LK + P Sbjct: 693 A----NSNQVIFGTMSFWEGVDIKGDDLRYLVMMKLPFPVPTEPVSAARMEQLKEEGKNP 748 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPE 696 F SLP+A Q GRLIRS G+++ D R+ TK+YG+ L+++P P++ + Sbjct: 749 FTNFSLPNAVIRFKQGFGRLIRSSKDTGKIICLDSRIKTKSYGRVFLNSIPSGCPVKVMD 808 Query: 697 VPEGIVKKK 705 + + Sbjct: 809 KTVLLQELH 817 >UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT1_HAHCH Length = 718 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 199/721 (27%), Positives = 336/721 (46%), Gaps = 36/721 (4%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAIE 53 + +K QI + Y+ + PR+ QR MIA++A+ L+ + +E Sbjct: 3 SEGIKEQIQSAYRKYIAA-RNIKPRSGQRHMIAEIARYLSSIELDGEFRRSNDATTCVVE 61 Query: 54 APTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAA 112 A TG GKTL+YL+ I A +K +V+STA V LQ Q+ ++LPLL + + K A Sbjct: 62 AGTGTGKTLAYLMASIPFAAALRKKIVISTATVTLQQQVVQRELPLLAEHTDLEFKVALA 121 Query: 113 FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 GRGRY+C L + + + +Q +L + + + + + + W G Sbjct: 122 KGRGRYICLHKLDSYLAGQ--EQGILLLDGPQESSGPDVDAEAYQRFMNWMVDKGWSGDW 179 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME 232 D I++ LW ++TD CLN+ C ++ +C ++ A+ E ++AE++VANH LV A + Sbjct: 180 DSAPEPIEESLWSTVTTDHRQCLNKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFADLA 239 Query: 233 --SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFT----KLVATC 286 VLP P+ + + DE HH+ D A + SA + + L+ + V Sbjct: 240 LGGGFVLPPPEETIYIFDEAHHMADKALNHFAFSAGLKSSQKMLRGLSRALVEGQSVFAY 299 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL 346 EQ + P A+ + ++ H + + + I ++R+ MG +P+E+ Sbjct: 300 DEQITNRVSPMAALSQEVHHHLDAVARFLNE--TIEWEENDERATFQYRYPMGVIPEELR 357 Query: 347 EICQRLAKLTEMLRGLAELFLNDL-----SEKTGSHDIVRLHRLILQMNRALGMFEAQSK 401 ++ +A + E L L E+ G + ++ ++ E Sbjct: 358 KLSAAMADKVGEMTKELEAVLKRLRELAEKEQPGGAQRQAYDQAVMALSVYQSQVENLED 417 Query: 402 LWRLA-SLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 +WR+ Q P +W T +E + H + L + LW ++TSA Sbjct: 418 VWRIMGEEVQEGHTPTARWLTTWAKETDSDVVVHVSPTNAAHLLRKRLWSRAFGCVLTSA 477 Query: 461 TLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAE 520 TL F RL GL + + SPF+ + + + +P + E ++ Sbjct: 478 TLSVAGRFDRLAGQVGLPDGSTFAIHH--SPFDFNNNCTLELCDLGRDP--QDSESYLEM 533 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL--MLLVQGDQPRYRLVELHRK 578 ++ + ++ K+ LVLF++ + MQ + D +L +++ Q + +L++ HR Sbjct: 534 LSQALLRIIDEKQ--ATLVLFSARKHMQFAARALADTKLGSLIITQDSGNKGQLIDTHRS 591 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 RV + SVL GL SFAEGLDL GD L V I K+ F D PV T EWLKS PF Sbjct: 592 RVDENKGSVLFGLASFAEGLDLPGDYLKHVIIAKLPFAVPDDPVEATYAEWLKSKGGNPF 651 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 LP A L+Q GRL+RS G++ I D+RL T++YG+ +L+ALP + + ++ Sbjct: 652 NQVVLPDAITRLLQACGRLLRSERDSGKISIMDRRLWTRSYGRIILNALPPYKVVSADIR 711 Query: 699 E 699 + Sbjct: 712 Q 712 >UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae RepID=C1ZB20_PLALI Length = 659 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 180/712 (25%), Positives = 283/712 (39%), Gaps = 72/712 (10%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M LTA + L ++P + R Q +M V A G HL +EA TG GK Sbjct: 1 MELTA---ENVLGQEGLLARRLPHYEVRGEQLEMARAVTA--AIAAGEHLVVEAGTGTGK 55 Query: 61 TLSYLIPGIAIAREE---------QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 + +YL+P I A ++ +++ST ++LQ+Q+ S+DLPLL I+P + Sbjct: 56 SYAYLVPAILAATANQGSTVDGGAKRRVIISTHTISLQEQLISRDLPLLNSILPVEFSAV 115 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 GR YV R L E + + L G DG Sbjct: 116 LVKGRSNYVSLRRLKGALE------------KSRSLFPTSEAEDQVRSLAGWARETN-DG 162 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 D +W + ++ +CL +NC Y +C ++ ARR + A+V++ NHAL A Sbjct: 163 SLASLDFKPLPQVWDEVRSEHGNCLGKNCPTYSDCHYYKARRRVWNADVLIVNHALFCAD 222 Query: 231 ME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME 288 + E P +V DE H L VA D L + Y + +L + Sbjct: 223 LALRREGASVLPDYQTVVFDEAHTLEQVAADHLGLGISSGQIEY-----MLNRLFNEKTQ 277 Query: 289 QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI 348 + P + ++YE + + ++ + PA A+ Sbjct: 278 KGLIAGYPLEPQRALITRLKHDVYEFFDEIRHRVHDHGPANGRVREPLAIEN-------- 329 Query: 349 CQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASL 408 L+ LR LA ++ + + L ++ G Sbjct: 330 -----TLSGDLRKLATSLAEYAAKLKQEEEKIELVSASERLISLAGSISQW--------- 375 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN-S 467 + W + L + C I V L L+ +P +I+TSATL S Sbjct: 376 VEQGRGDSVYWVETTGAQRNLKVKLCCSPIEVGSVLREELFNKVPTVILTSATLAVGQQS 435 Query: 468 FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 F ++ GL + + L SPFN+ EQ K+V+P +P+ D+ + ++ Sbjct: 436 FDFIRSRLGL---TRSQSLRLGSPFNYREQMKLVLPDGMPDPT-DSPADFEFAVCEKIQE 491 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQ-GDQPRYRLVELHRKRVAN 582 V VLF S + +Q +T L Q G+ PR +++E RK Sbjct: 492 YVSQTS-GRAFVLFTSYKMLQSCERRLTNWLIRKNFSLYSQSGELPRSQMLERFRK---- 546 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 +VL G SF +G+D+ GD L V I K+ F D P++ E +++ PF Sbjct: 547 DPAAVLFGTDSFWQGVDVPGDALQNVIITKLPFSVPDHPLLEARVEAIRARGGNPFMEYQ 606 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 +P A+ L Q GRLIR+ G VVI D R+ TK YG+ L++LP I Sbjct: 607 VPEAAIKLKQGFGRLIRTKTDRGMVVILDPRIRTKPYGRVFLESLPECRIVH 658 >UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N252_9GAMM Length = 639 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 173/700 (24%), Positives = 281/700 (40%), Gaps = 77/700 (11%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 Q+ A L + + R Q +M V++ LA E L EA TG GKT +YL P Sbjct: 5 IEQLFAEGGLLSNHVEGYSARTQQIEMAEKVSEALANNE--VLIAEAGTGTGKTFAYLAP 62 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + + + +ST LQDQ++ KDLP L++++ LK GR Y+C L Sbjct: 63 AML----SGQKVFISTGTKNLQDQLFKKDLPKLREVLSVPLKAALLKGRSNYLCHHRLAL 118 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 S P+ +Q L+ + L + + LW + Sbjct: 119 AESE----------------PSAVYQQHTLQTLREWMGKTSSGDLSETDLLEEQSPLWPK 162 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPKNL 243 +++ +CL + C Y +C ARR+ QEA++V+ NH L+M+ M S P Sbjct: 163 VTSTIDNCLGQQCPDYDDCFIVEARRKAQEADIVIINHHLLMSDMALKASGQGEVLPDAD 222 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 ++DE H LP +A L Q+ ++ ME E+ Sbjct: 223 AFIIDEAHQLPAIASQFLGHRVSS------HQIQELSRDSIREMELDATDMEDIRQSAEK 276 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 ++ + + L Y Q+ + A+ L + ++ Q L +E RGL Sbjct: 277 IDNRLHQFKLTLGDKEQRLPWYQVVQQQTTTQDALDSLIMAIEKLEQSLEPASERGRGLE 336 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 + + R +I ++N + + W Sbjct: 337 QCY-------------QRCQEIIKKLNVFSD---------------NETDDNLILWLDVR 368 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 H +S ++ + + TSATL F+ + G+ + Sbjct: 369 G----ASFILHATPQEISQHFQQWIADKPSAWVFTSATLTVAGKFNNFIQQLGIDDPV-- 422 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + SPF++ Q + +P + VEPS ++ HIA +A + + +LF S Sbjct: 423 -TKSWQSPFDYASQSLLYMPSIPVEPSNNSYNSHIANIAKAVIEY----SQGRIFLLFTS 477 Query: 544 GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 RA+ D + D+ +LVQG + +L+ R+ +VL+G SF EG+D++G+ Sbjct: 478 YRALHEVADALQDMEYPILVQGAGAKSQLLAEFREH----GNAVLLGTNSFWEGVDVRGE 533 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I KI F PV+ L+ PF +PSA L Q +GRLIR Sbjct: 534 ALSCVLIDKIPFASPGDPVLEARINHLRERGGNPFRSIQIPSAVIQLKQGIGRLIRDKRD 593 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ--PEVPEGI 701 +G +V+ D R L+K YGK + +LP PI Q +V E Sbjct: 594 YGVLVLCDPRFLSKPYGKIFMRSLPPMPITQQLDDVAEFF 633 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 165/716 (23%), Positives = 288/716 (40%), Gaps = 50/716 (6%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L +P F R Q+ M+ ++ L + R IEA TG GKTL+YL+P I A+++ Sbjct: 248 DKLALNMPKFEKRESQQIMMKEIYTAL--RDSRFSLIEAGTGTGKTLAYLLPSIYFAKKK 305 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 ++ +++ST V LQ QI K++PLL+KI+P + GR Y+C E Sbjct: 306 EEPVIISTQTVQLQQQILEKEIPLLQKIMPFSFEVALLKGRKHYLCLHKFEYALQEEEKN 365 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 D+ + GD D LW R+ +D S Sbjct: 366 YDMA-------LTKAKILVWLLQTETGDRDELNI--------PEGGKLLWNRICSDVHSP 410 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 ++ C + A+ + A++V+ NHAL+ SE L ++ DE HH+ Sbjct: 411 GGMQSNWFSRCFYQRAKNKALFADIVITNHALLFQDFSSEEPLF-ASCEHIIFDEAHHIE 469 Query: 255 DVARDALEMSAE----------ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 + A L + L K++ + R + L Sbjct: 470 EAASRTLGEQFSCMYFQLVLSRLGTLETDDVLSKVYKMMKKSEQASRSTFRMVSHSLKEL 529 Query: 305 NAHCEELYELIASL------NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 +EL++++ + MP G+L D + E+ R Sbjct: 530 KFDADELFQMLRAFIFKQTKQEQGISNMPLIYRYNTEVEKGKLWDSITELTNRFVYDIRK 589 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 L E ++ L K +H + + + + ++ +L L Sbjct: 590 LLTTLEKQVDILQSKIEWE----MHVVTGEFMHLIELLRKMAQALQLLIL---EKNSYVT 642 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W E + + + ++++ +I TSATL +SF+ ++E GL Sbjct: 643 WMETETKGTIHSTVLYGQPVHIAERFADEFLTEKKSVIFTSATLTVNDSFAYIKEELGLH 702 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + A + + + SPF EQ K+++ + E++I ++ K + ML Sbjct: 703 DFAPN-TLQVPSPFRFEEQMKLMVSTDVPFIKKASNEEYIESVSTHIAK-IAKATKGRML 760 Query: 539 VLFASGRAMQRFLDYVTD----LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 VLF S ++ + + +LL Q + R ++ ++S+L+G SF Sbjct: 761 VLFTSYEMLKEAYTNLKNDEELEGYLLLTQSVNNKSR--SRLIRKFQEFDKSILLGTSSF 818 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+ GD LS + I ++ F P P++ +GEWLK+ F +LP A Q Sbjct: 819 WEGIDIPGDALSCLVIVRLPFTPPYQPMIEAKGEWLKNQGEDVFAKLALPQAILRFKQGF 878 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 GRLIR+ G V + D+RL + +YGK L ++P P+ + + E + + KE+ Sbjct: 879 GRLIRTSTDTGTVFVLDRRLTSSSYGKYFLQSIPTVPLYEGPLEELLEQVKERPTE 934 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 187/714 (26%), Positives = 288/714 (40%), Gaps = 45/714 (6%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 L DF R PQ Q+ V + L EE L +EA TG GK+ +Y Sbjct: 233 PQAVEAFLGPGGVLTRHFADFEYRRPQMQVALAVGRAL--EEQTVLTVEAGTGTGKSFAY 290 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRN 123 L+P A + + +VVST V LQDQ+ KDLPLL + + LK GRG Y+C R Sbjct: 291 LVPAALWALDGGRRVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRR 350 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 A + + +FL DE + GD + Sbjct: 351 WGAAVNEQ-------SFLPDEGFLYARIAVWLARTKTGDRAELSLR--------PEEKGF 395 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL 243 W ++ C + C + C ARR ++A +V+ NH+L+++ ++ E L P Sbjct: 396 WDGVAAGDWGCAHAYCRFNSVCFLQRARRAAEQAHLVITNHSLLLSDLKMENRLL-PAYD 454 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 LVLDE HHL VA + L + A ++ +L E + L E Sbjct: 455 ALVLDEAHHLEGVATEQLGTTVSRGA--LERWVEGLNRLTGRIGEFYPDNRDEFLRDGEA 512 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 L A + L+ + + + E FA L L+ C A L G Sbjct: 513 LLAAVRRFFALLGA-------RLRRRELPEEDFAAERLGPRALDACPETAGSYLELAGSL 565 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW--RLASLAQSSGAPVTKWAT 421 + ++ LS + + ++ L A K L + +++ W Sbjct: 566 KAYVQRLSRAVERLTDSTVPAVQEELRVGLEQELAVGKRLASDLEFVYEAADPGYVFWLE 625 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA 481 R+ + + V + L +RS +I+TSATL +SFS E GL+ Sbjct: 626 GGGRQTAEGV-LRAAPVHVGELLHDGFFRSGKPVILTSATLTVQSSFSFFDERVGLEHLP 684 Query: 482 GDR--FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 D + + SPF + EQ + + +P D + ++ ++ + V L Sbjct: 685 RDLRGSLIVGSPFAYAEQALLYVVTDLPDPG-DGDGAYLDAVSDALGRIV-GVTRGRTLA 742 Query: 540 LFASGRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSF 594 LF + +A++ + L LL G D R RL++ R N ++VL G SF Sbjct: 743 LFTAHKALRTAYRRLKPVLEKQGLELLGHGLDGGRARLLQYFR----NTPQAVLFGASSF 798 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+ GD LS + I K+ F P + PV+ E ++ R F LP A L Q Sbjct: 799 WEGVDVPGDALSCLVIVKLPFEPPNRPVLQARREEVRRRGRSDFNDLCLPQAVLRLKQGF 858 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 GRLIR+ G V+I D RL+ K YG L++LP P+ + G+ Sbjct: 859 GRLIRTTADRGVVIILDNRLVRKRYGALFLESLPAAPM-HGSLEAGLEATAAFL 911 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 162/729 (22%), Positives = 290/729 (39%), Gaps = 50/729 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L A + L + +P + R Q++MI V + L E ++L +EA TGVGK+L Sbjct: 238 LAEDEVAVLVGKDGPLADVVPGYEYRPQQQEMIRLVTRAL--NEEKYLLMEAGTGVGKSL 295 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYVCP 121 +YLIP + + ++ ++V+T + LQ+Q++ KD+PL K K + GR Y+C Sbjct: 296 AYLIPSVLWSCLNRQRVLVATRTINLQEQLWHKDIPLAAKVTGRPFKASLVKGRQNYICL 355 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R ++ Q+ F + GD I ++ Sbjct: 356 RRWFSVLENPHQPQEAGFF--------ARVLTWLTVTQTGDKSELNV--------IPAEE 399 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK 241 D W + + C+ C Y + C A+RE +E+ +++ NH+L+ + ++ E P Sbjct: 400 DFWLSICGESDGCMGSRCRYLKYCFVNAAKREAEESNLIITNHSLLFSDVKVENR-ILPA 458 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVATCM----EQFRPKTI 295 L++DE HHL + A L W +L E++ Sbjct: 459 YEALIIDEAHHLEESATVHLGRQVTQGALNRWLSAAGKALFRLAEKVPPEDVEKWSETIK 518 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP-----DEVLEICQ 350 + + ++ + L + L+ R + ++ + VLE Sbjct: 519 DSREVLLEAQGNVHFFFQQLGELASALSNDEGDSGRITLRLSNEKMLANTSYNAVLECGT 578 Query: 351 RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF-EAQSKLWRLASLA 409 R +L L G L + ++ ++ Q+ + L + Sbjct: 579 RCIELFLSLNGKIGYIAKVLEMWGITEEV-----WAEAARDLFQIYNSGQTIIDDLQFIL 633 Query: 410 QSSGAPVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 + WA E R G + + + V L +++ +I +SAT+ +F Sbjct: 634 EGREQGFVYWAEFEYSRRGFKNYALYAAPVNVGTVLYEQFFKNRGTVIFSSATISVNGTF 693 Query: 469 SRLQEMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 + +GL ++ + DSPF Q + I EE ++ + Sbjct: 694 DHFIDRNGLNNFPPEKIIKASFDSPFAFERQALLCICHDLPVQGAVAEEVYLDNLEEAIL 753 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQG-DQPRYRLVELHRKRVA 581 K +E LVLF S + ++ + + +L G D R L+E + Sbjct: 754 KLLE-AVGGRTLVLFTSHKVLRETYRRLKPRMEARGICILGHGIDGNRLNLLEEFK---- 808 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 + ++VL G SF EG+D+ G+ LS V + K+ F PV+ E L R F Sbjct: 809 STAQTVLFGASSFWEGVDVPGEALSCVIMVKLPFVSPSVPVIEARLEDLARRKRDGFRDL 868 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGI 701 S+P A Q GRLIRS G V++ D+R+L+++YG+R L++LP+ + ++ + Sbjct: 869 SVPQAVIRFKQGFGRLIRSGSDRGCVIVLDRRILSRSYGRRFLNSLPLKKHFRGDIETIV 928 Query: 702 VKKKEKTKS 710 K + K Sbjct: 929 RKISDWMKE 937 >UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q21I38_SACD2 Length = 720 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 222/725 (30%), Positives = 340/725 (46%), Gaps = 42/725 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 L +K +I Y E + PR Q+ MIA++AKTL EG I Sbjct: 2 LNKDVKKEIQQAYSKFLEA-RELKPRYGQKLMIAEIAKTLGSIQLNADGERQTEGHLCVI 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTA 111 EA TG GKT+SYL+ + +A+ K +V++TA VALQ+Q+ KDLP L + F Sbjct: 61 EAGTGTGKTVSYLLAALPVAKALGKKVVLATATVALQEQVVLKDLPDLIRYADLKFNFCL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L + ++ Q + +DE + ++ + K + L KWDG Sbjct: 121 AKGRGRYMCLSKLDKILTSSDDTQ-FIPLYEDEHSEISEFDTKLYTSMMEKLGEGKWDGD 179 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RD+ ID +W+R++TD C RNC + R+C FF AR + EA+ +VANH LV+A + Sbjct: 180 RDNWHDEIDQPVWQRVTTDHRQCTGRNCKFVRQCAFFNARELLDEADCIVANHDLVLADL 239 Query: 232 E--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITA--PWYRLQLDLFTKLVATCM 287 A+LP P+ + + DEGHHLPD A + + W ++ L+ Sbjct: 240 ALGGGAILPAPEETIYIFDEGHHLPDKALNHFASHTRYKSTIRWLGQSEGQWSNLIEPLT 299 Query: 288 EQ--FRPKTIPPLAIPER----LNAHCEELYELIASLNNILNLYMPAGQ-------EAEH 334 + F P A+ + + AH + E + +L + + Sbjct: 300 DASYFTQIAAPTEAVFKNVRSLMEAHLPHMQEWVYALEASNEKDNDRFRRDDRQESSRQL 359 Query: 335 RFAMGELPDEV----LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMN 390 RF G +P + E+ L+ L L + + + V + + + Sbjct: 360 RFEQGVVPAAMEYLARELVDAFLDLSMHLGKLHKELETLIEDDYPLVPRVDIETVHGAVG 419 Query: 391 RALGMFEAQSKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLW 449 L + LW+ A P+ +W T + I S LE+ LW Sbjct: 420 TWLARADGNLSLWKSYADTKVIENWPIARWITVTTFNDVMDYEIVSSPILASKALEKDLW 479 Query: 450 RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 +VTSATL +LNSF R + SG + + + + SPF++ + + IP VE Sbjct: 480 SRCCGAVVTSATLTALNSFDRFKIRSGTYDDS--HYSVVPSPFDYPNRAVLRIPSFAVEA 537 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQP 568 + H M + + ++ K G LVLF+S + M D + D R+++L+QG Q Sbjct: 538 NFA--ADHTDSMIEYLPEIIDKKA--GTLVLFSSRKQMLEVFDQLPADFRMLILMQGSQS 593 Query: 569 RYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGE 628 + LV H+KR+ G S++ GL SFAEG+DL G + V I KI F D P+ + E Sbjct: 594 KQVLVSDHKKRIDEGSGSIIFGLASFAEGVDLPGKYCTHVIIAKIPFAVPDDPLEASLAE 653 Query: 629 WLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 W++S F ++P A+ L+Q GRL+R+ G V I DKRL+TK YG+ LL++LP Sbjct: 654 WVESRGGNSFMQITVPDAAMRLVQACGRLLRTESDKGVVTIMDKRLITKRYGQALLNSLP 713 Query: 689 VFPIE 693 F E Sbjct: 714 PFKRE 718 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 173/716 (24%), Positives = 280/716 (39%), Gaps = 57/716 (7%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L EQIP + R Q +M+ VA LAG +L +EA TG GK+L+YL+P I A + Sbjct: 238 GLLAEQIPGYEYRPQQVEMLRAVASALAGNH--YLTVEAGTGTGKSLAYLLPAIYWACSQ 295 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 +K + ++T ++LQ+Q++ KDLP L++++P K GR Y+C R L + P Sbjct: 296 RKRVAIATHTISLQEQLWQKDLPQLRELLPFSFKAALVKGRSNYICRRKLRDYLANPPAG 355 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 + F + + GD K ++ L+ D +C Sbjct: 356 EAERLFAM-------RVLRWLEVTTSGDWSEMKLT--------PEEEGFKFALAADTETC 400 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 C + EC ARRE + A +++ NH+L+++ P L++DE HHL Sbjct: 401 TGSACPFNDECFVNAARREAEAANILILNHSLLLSD-IRLNNQVLPDYPYLIIDEAHHLE 459 Query: 255 DVARDALEMSAEITA---------------PWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 + A + L S + + +L +L + Sbjct: 460 EAATEHLGSSVSQASCELFFRRLGRGEQAYSFLGRVRNLARRLPPEGNLELADFLEDMEL 519 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 A +E +E + L++ + AG + E P + L E L Sbjct: 520 TVTATLAGWQEFWESLGRLSDAAR-WEEAGYTLRFTSRLKETP-AWDNLLSVFGSLEENL 577 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 G + L + + S + L + + A W Sbjct: 578 SG----LASRLERLSELLSAAGAGEFAADAGNFAAVVAQYS--YDLGQILDADPATSVSW 631 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 + + + L LL+ +I+TSATL NSF + +GL+E Sbjct: 632 LEKNNHG---QYILRSAPLDIGPLLAELLFSRKQAVILTSATLTVNNSFDYYHQQTGLQE 688 Query: 480 KAGDRFV--ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 DR V + SPF++ Q + R P + + + + Sbjct: 689 LPADRVVSCQVSSPFDYRSQALVCSIRGLPNPGQLKDADYARAIT-PVLTAICPAVGGRS 747 Query: 538 LVLFASGRAMQRFLDYVTD----LRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQ 592 LVL S R ++ + ++ +L QG D R RL+E R+VL+G Sbjct: 748 LVLCTSHRFLREVYELLSADLNGSGYRVLAQGIDGSRSRLLEEFI----QTPRAVLLGAN 803 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 S+ EG+DL GDLL V I ++ FP P + E L + + F SLP A Q Sbjct: 804 SYWEGIDLPGDLLRCVIIPRLPFPSPGIPTLAARMEHLAARGQNAFATLSLPQAIIRFRQ 863 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 GRLIR G +VI D+RLL++ YG+ + +LP +E+ + + K Sbjct: 864 GFGRLIRRASDRGVLVILDQRLLSQRYGRLFIQSLPPVTLEEVDPAGAPSRIKTWF 919 >UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6H8_9PLAN Length = 666 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 174/714 (24%), Positives = 300/714 (42%), Gaps = 67/714 (9%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 ALT + + I + +++ + R Q +M VAK + ++ +HL +EA TGVGK+ Sbjct: 4 ALTTDVLS-ILGSDGKIAQRLEKYEHRPEQLEMAEAVAKAI--DQKQHLLVEAGTGVGKS 60 Query: 62 LSYLIPGIAI--------AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAA 112 +YL+P I + +++K L+VST ++LQ+Q+ +D+P L ++P + Sbjct: 61 FAYLVPAILATCKQNETRSGKDRKRLIVSTNTISLQEQLIHRDIPFLNAVLPVEFSAVLV 120 Query: 113 FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 GR Y+ R L + T + +EE + ++ DG R Sbjct: 121 KGRSNYISLRRLKGAVERAGS------------TFSKEEELSQLDQIV-QWSHKTTDGSR 167 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME 232 + +W + ++ +CL + C Y +C ++ ARR + A+V+V NHAL + + Sbjct: 168 ADLEFRPIPKIWDEIQSEHGNCLGKRCATYNDCFYYRARRRVWNADVLVVNHALFFSDLA 227 Query: 233 --SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQF 290 E P ++LDE H + VA D L +S + Y L Sbjct: 228 IRREGSSILPDYDTVILDEAHTIEAVAGDHLGLSITNSQFDY---------LFNKLYNDR 278 Query: 291 RPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQ 350 K + H L ++ L + L + + A R ++ I Sbjct: 279 TQKGLLLHHNLVDCQQHVTRLRFMVEDLFDHLLEWQDSSGLANRRIR------QLPPIEN 332 Query: 351 RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ 410 +++ +L + L + ++ + +L + L Q Sbjct: 333 CVSQEMRLLAARIAEYAFTLKNEEEKIELSAAAERCTALGDSLNSW-----------LTQ 381 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN-SFS 469 + A W R + + V L L+ +I+TSATL + FS Sbjct: 382 QAEADSVYWVEA-TRGRHQRVKMVNAPVDVGPVLRDELFNQAQTVILTSATLAVGDQDFS 440 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 + GL + L SPFN+ EQ ++++P +P +N + A +A ++ + Sbjct: 441 FTRSRLGL---TQSEELKLGSPFNYQEQVRLILPAAMPDPG-ENPAAYEAAVAEKLKQYI 496 Query: 530 ESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPRYRLVELHRKRVANGER 585 E LF S + MQ+ D +++ L L +QGD L+ +R N R Sbjct: 497 EQ-TDGHAFALFTSYKMMQQCADRISGWLSEHNLALYLQGDGLPRSLM---LERFRNNPR 552 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 VL G SF +G+D+ GD L+ V I K+ F D P++ E +++ PF +P Sbjct: 553 GVLFGTDSFWQGIDVPGDALTNVIITKLPFSVPDHPLLEARVEAIRNRGGNPFMDYQIPE 612 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 A L Q GRLIR+ +G+VVI D R+ TK YG++ L++LP + E + Sbjct: 613 AIIKLKQGFGRLIRTASDYGQVVILDPRVRTKRYGEKFLESLPDCTLIIDEQDD 666 >UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V4E9_9PROT Length = 648 Score = 482 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 165/717 (23%), Positives = 276/717 (38%), Gaps = 82/717 (11%) Query: 7 LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 A+ + L ++ F PR QR+M VA + L EA TG GKT +YL+ Sbjct: 4 EVARFFSEQSPLATEVSSFRPREQQREMALAVADAIKNN--AILVAEAGTGTGKTFAYLV 61 Query: 67 PGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLT 125 P + +++ST LQDQ++ KDLP+++ + + GR Y+C +L Sbjct: 62 PALL----GGGKVIISTGTKNLQDQLFQKDLPMVRDALKAPVSIALLKGRANYICHYHLE 117 Query: 126 ALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWR 185 A +E+ K K+K D+ + +W Sbjct: 118 RTAHDGR--------------FATREDIKHLGKIKKYAKITSTGDKSGVADVPENAPIWL 163 Query: 186 RLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---PDPKN 242 ++++ + +CL + C ++EC AR E +A++VV NH L A + + P Sbjct: 164 QVTSTRDNCLGQECPNHKECFVLHARTEAMKADIVVVNHHLFFADVMLKDDGVAELLPAC 223 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 ++ DE H LP+ A + T + R + + Sbjct: 224 NTVIFDEAHQLPETASLFFGENLSTTQLL-------------DLAQDSRIEALTSAKDFA 270 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 L C+EL + L + A F + +L L+E L+ + Sbjct: 271 PLPKACDELDKAARDLRLVFKKEGRMPAIATGSFK---------DFAPQLKNLSEKLKQI 321 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 ++ + + G + + + + L + +W Sbjct: 322 NDMLESQAARSEGLENCWQRAQAFSLL---------------LKNWQDDKADDKVRWLEV 366 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 L + + +++ E+ + + I TSATL FS Q GL + Sbjct: 367 YHH----SLQLNATPLSIAEIFEKQIGSTARAWIFTSATLAVKQDFSHYQGEMGLLKAKT 422 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + DSPF++ +Q + +P EP+ + + + + A + +LF Sbjct: 423 ACW---DSPFDYEKQALLYVPSGLPEPNSEGYTEAVIQAALPMIE----ASRGRAFLLFT 475 Query: 543 SGRAMQRFLDYV------TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAE 596 S RAMQR + + LL+QG+ R L+ R+ +VL+G QSF E Sbjct: 476 SLRAMQRAHEILTAEFDLRGWSYPLLLQGEGSRNELLGRFREH----GNAVLLGSQSFWE 531 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D++G+ LS V I K+ F P D PV+ + R F LP L Q GR Sbjct: 532 GVDVRGEALSLVIIDKLPFAPPDDPVLAARIAQISKQGRNAFMEYQLPRTIITLKQGAGR 591 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRR 713 LIR G ++I D RL+TK YGKR+ +LP + E + +PR Sbjct: 592 LIRDENDRGVLMICDPRLITKQYGKRIWQSLPPMKRTRVETEAVAFFTAQSEATPRE 648 >UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSI7_9GAMM Length = 631 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 173/702 (24%), Positives = 285/702 (40%), Gaps = 81/702 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + + L + I + PR Q+QM V K + E+ L +EA TGVGKT +YLIP Sbjct: 4 SDLLGAEGPLAKVIEGYAPRDAQQQMAEAVEKAI--EDIDVLVVEAGTGVGKTYAYLIPA 61 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 I + +++ST LQDQ+Y +DLP+L K + LK GR Y+C + Sbjct: 62 IL----SGQKVIISTGTRTLQDQLYHRDLPMLLKTLGVPLKRALLKGRSNYLCLHRMGIA 117 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 ++ ++E+ ++ A++K + + T + + + ++ Sbjct: 118 ----------------DVHHRDREQSEQLAEIKRWSRETIHGDMAEVTLLPENAPILPKV 161 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLL 244 ++ +CL +C +Y +C ARRE QEA++VV NH L MA M + P Sbjct: 162 TSTADNCLGVDCEFYNDCHVVKARREAQEADLVVVNHHLFMADMALKQDGFGEVLPTANA 221 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 + DE H LP+VA + ++ + ++ R ++ + L Sbjct: 222 FIFDEAHQLPEVASLFFGQAV-------------GSRQLLEFVKDIRAVYHTEISEADSL 268 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 L + L E R A L + ++ R A L + L Sbjct: 269 IDLSSRLEMSVRDFRLSLGA-------KEQRQAWQPLLSQA-DVRHRFADLAAAMSTLRA 320 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 + + G + + ++ + +L W Sbjct: 321 ELVEWEEQGPGVE----------------NLLKRCTEFEQRLTLFDHLDEDYIYWLETT- 363 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 +L + + V+ + R + TSATL F + GL E R Sbjct: 364 ---RLGFVLNMTPLSVAKTFRAHMSRYEASWVFTSATLAVGEQFHHFTQSLGLWEP---R 417 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + L+SPF++ I +P EPS + + + A + +LF S Sbjct: 418 TLRLESPFDYANNSIICLPENLPEPSAFHFTDAVVDAAKPILQ----ASRGRAFMLFTSY 473 Query: 545 RAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 RA+ + + ++ L VQG+ PR +L++ R+ VL+G SF EG+D+KG+ Sbjct: 474 RALNHAAERLKSEVAFPLFVQGEAPRTQLLDDFRE----SGDGVLLGTSSFWEGVDIKGE 529 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I K+ F + PV+ + +K + PF LP+A L Q VGRLIR Sbjct: 530 ALSCVIIDKLPFAAPNDPVLQARMDAMKEQGQNPFMDYQLPNAVIALKQGVGRLIRDVHD 589 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEGIVK 703 G VVI D RL TK YGKR ++LP + ++ + K Sbjct: 590 RGVVVICDVRLKTKFYGKRFTNSLPPMKRTRKLSDIQQFFAK 631 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 147/715 (20%), Positives = 274/715 (38%), Gaps = 43/715 (6%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 L+ PD+ R Q M+ V ++ E H +EA TG GKTL YL+P I Sbjct: 244 REKEDMLKNAFPDYELRPGQLAMMDAVYQSFLNNE--HTLVEAGTGTGKTLGYLLPAIIF 301 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALAST 130 AR+E +++ST V LQ+Q+ SKDLPLL+K++ GR Y+ + Sbjct: 302 ARQEGARVLISTYTVQLQEQLLSKDLPLLEKLLGFPANAVLLKGRKHYLSLARFEQSLNE 361 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 D Q GD+D + W ++ Sbjct: 362 ADDNYD-------TTLTKMQILVWLTETATGDVDELNLS--------SGGAVFWNKIQNG 406 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG 250 + + + + AR+ + A++++ NHA+++ ++ E P V+DEG Sbjct: 407 DSKFI-SESGWKSRDFYNRARKSAENADLIITNHAMLLNSLSGENQ-IFPSYDYAVIDEG 464 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLF---TKLVATCMEQFRPKTI--------PPLA 299 H A S + + L +L+ + Sbjct: 465 HQFSKAAGKHFGFSIDYLSLRLLLGKIGLYDQKQLLYKLERLLEGRAAMDGAAHPFELNR 524 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + L +E ++L+ P + + + + ++ Sbjct: 525 LVADLQYEMDEFFKLVGIYGKRKLKARKYASSKISFRLTDITPRDFKAVEASAERFSFLV 584 Query: 360 RGLAELFLNDLS--EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 L + L L+ +++ +G + R A + Sbjct: 585 LDLISALEDRLQLLVPLTGELAPGDQALLEEISACIGELRDVRESIRKTIFAGQTAC--A 642 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 W + R Q + I V+ L + ++TSATL SF + + GL Sbjct: 643 VWVELDGRAMQNATTVYSQPITVAGNLRDGFFNQKKSAVITSATLSVGQSFDYIMDELGL 702 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGM 537 + + ++SPF++ Q ++ +P E + E++++ + E+ + M Sbjct: 703 DRFSCQTEL-IESPFDYASQVRLAVPSDLPEINSVPLEEYVSAITEHIISLAEAA-NGRM 760 Query: 538 LVLFASGRAMQRFLDYVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 L+LF S ++R + V + +L+ QG R + ++S+L G S Sbjct: 761 LILFTSHDMLRRTYELVKESGFLEEYVLIAQGITSGSRT--RLTRNFQRFDKSILFGTSS 818 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D+ G+ LS + + ++ F P D P+ E ++S PF +LP A Q Sbjct: 819 FWEGVDIPGEDLSCLVMVRLPFSPPDEPLGEARKEAIQSRGGRPFSEHALPEAVLRFKQG 878 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 VGRLIR+ G ++++D+R++T +YG+ LD++P P++ + + ++ Sbjct: 879 VGRLIRTKNDRGIIIVFDRRIVTASYGRAFLDSIPSIPVKVSPLDAIVDLVEDWL 933 >UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0A9Y9_ALHEH Length = 708 Score = 480 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 233/706 (33%), Positives = 342/706 (48%), Gaps = 26/706 (3%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE--EGRHLAIEAPTGVGK 60 L ++K +I + + + +P F R+ QRQMIA+VA+TLAGE R LAIE PTG GK Sbjct: 2 LEESVKQEIREALRQVGQNVPGFRSRSQQRQMIAEVARTLAGECEGRRLLAIEGPTGTGK 61 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYV 119 +L+YL+ GI +AR E + L++STA VALQ+QI +DLP L+ + GR RYV Sbjct: 62 SLAYLLAGIPVARAEGRQLIISTATVALQEQIVDRDLPALQANSGLTFSYGLIKGRRRYV 121 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQE----EQKRCAKLKGDLDTYKWDGLRDHT 175 C RNL L + L ++ E + L DL WDG D Sbjct: 122 CTRNLEQLVGGAAQGEMDLGGPSAGPAHWPRKPQTGELEHLQALYRDLQAGDWDGDLDRR 181 Query: 176 DIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA 235 D L ++TD+ C R C + +CPF ARR ++E +V+VANH LV+A + Sbjct: 182 PPPAAD-LQGPMTTDRHGCTGRGCPHVSDCPFHRARRGMEEQDVLVANHDLVLADLAMGG 240 Query: 236 --VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 +LP P+ + V DE HHL A DA + + A L+ +L + + Sbjct: 241 GVILPPPEQVFYVFDEAHHLAARATDAFRAESPLLASV--QWLERLPRLAGQAISLLPEE 298 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNL-YMPAGQEAEHRFAMGELPDEVLEICQRL 352 L E L EL ++ ++ ++ + ++ RF GELP + E+ L Sbjct: 299 AGRHL---EALERAVNELSAMLNEMHGMIRRDWQRMNRDGVWRFPAGELPAPLGELVPGL 355 Query: 353 AKLTEMLRGLAELFLNDLSEKTGSHDI---VRLHRLILQMNRALGMFEAQSKLWRLASLA 409 + + ++ T + RL ++ A E + WRL + Sbjct: 356 RDASAEVEKHYGRIGQAFAKVTAEEGVTPGSVAERLAPELGEAASRVEHLADTWRLVARE 415 Query: 410 Q-SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 Q S PV +W T G+ + + L LW ++TSATL +L F Sbjct: 416 QPSEAPPVARWITALG-SGRPDYLVAASPVSAAAMLRNGLWSRAAGAVLTSATLTALGRF 474 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 R++ GL+E G R+++L SPF++ + + +PRM +P + E H E+ Sbjct: 475 DRMRLACGLEEDDGTRYLSLASPFDYRNRAVLHVPRMASDP--RDPEAHTGELIRVLPGI 532 Query: 529 VESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 +E G LVLFAS R + + + + + +L Q ++PR L+ H + V GE SV Sbjct: 533 LE--PEGGALVLFASARQLDAVYEGLPAEWQGRILRQRERPRVELLAAHARAVEAGEPSV 590 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 + GL FAEG+DL GDL V I K+ F DSPV T EWL+S R PF ++P A Sbjct: 591 IFGLAGFAEGVDLPGDLCRHVVIAKLPFAVPDSPVEATLAEWLESRGRNPFMDITVPDAG 650 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 L+Q GRL+RS G V + D+RLLT YG+ LL+ LP F E Sbjct: 651 MKLVQACGRLLRSEADSGRVTVLDRRLLTHRYGQALLNGLPPFGRE 696 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 171/726 (23%), Positives = 306/726 (42%), Gaps = 47/726 (6%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 ++ ++ + A+ F R Q+QM+ +V EE H IEA TG GKTL+YL Sbjct: 241 EVEDELFSSSGAIARVFDSFEDRPGQKQMMKEVYAAF--EEHAHALIEAGTGTGKTLAYL 298 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 +P A ++K +V+ST + LQ+Q+ +DL LL I+P L+ GR Y+ R Sbjct: 299 VPSAYFAYSKKKPVVLSTYTIPLQEQLLQRDLRLLASIVPFPLRTAVLKGRSHYLDLRKF 358 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + +L GD++ W Sbjct: 359 EQALQQLENDSYDVCLTKAQLL------VWLLETDYGDVEELNLT--------TGGRSFW 404 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL 244 + +D S L + ++ C + +RR+ ++A++++ NHAL++ + + P Sbjct: 405 PMVQSDPESDLGKYNPWFSRCFYHRSRRQAKKADLIITNHALLLTDVVQTHSVL-PSYSH 463 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQL---DLFTKLVATCMEQFRPKTIPPLAIP 301 V+DE HH + A ++A + + +Q D +E + PLA+ Sbjct: 464 AVIDEAHHFQEAASAYFGLTASFLSVSFAIQRIGDDHHEYGAIARLETLGEQMKQPLALD 523 Query: 302 E------RLNAHCEELYEL-----IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQ 350 + R +EL+ + + + + + G L +LE Sbjct: 524 DAKEGLVRFREDTDELFRMIHVFALDAQESNATDVGRISYVYKSFSEEGMLWQAILECAM 583 Query: 351 RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ 410 RL E + + + EK + R L+ A+ FE + L L Sbjct: 584 RLQLHGEQVLAALKAAYQVVEEKVEAEYESR--SLLADTQGAIAAFE--ETVQLLYELLL 639 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 W E + + + + I VS++L + +++TSATL SF Sbjct: 640 EYDDNYVYWIEVEPKGAKNATYLYAKPIEVSERLADQFFAKKKSVVLTSATLTVNQSFDY 699 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 + GL + G + ++SPF++ +Q K++IP + ++E ++A + + Sbjct: 700 QIDRLGLVDF-GVKTKQIESPFSYAQQAKLLIPYDIPDVRGPDDELFAQDIAIKIWR-IT 757 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQG--DQPRYRLVELHRKRVANGE 584 LVLF S +++ YV DL +L L+ QG R RL++L + + Sbjct: 758 EVMQRKALVLFTSYDMLKKVFYYVKDLNDEGKLALIGQGVTSGSRMRLLKLFK---QAEQ 814 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 R+VL G SF EG+DL G+ L + I ++ F P + P+ + E K+ + PF +LP Sbjct: 815 RAVLFGTNSFWEGIDLPGNELECLIIVRLPFAPPNLPLNRAQMERAKAEGKNPFTDLALP 874 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKK 704 A Q GRLIR+ G G + ++D+R++T YG+ +D+LP P+ + ++ + Sbjct: 875 QAVIRFKQGFGRLIRTKGDRGLIFVFDRRIVTTRYGRTFIDSLPDVPVYEGKLERLLEDH 934 Query: 705 KEKTKS 710 + + Sbjct: 935 LDFREE 940 >UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Q3_9BACT Length = 701 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 168/697 (24%), Positives = 278/697 (39%), Gaps = 72/697 (10%) Query: 9 AQIAAWYKALQEQIPD----FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 + A L++ + R Q +M +A L G +L IEAPTGVGK+ +Y Sbjct: 54 EEFFAPGGPLKQAAEYGGRPYEFRPQQLEMSTAIADALTA--GENLCIEAPTGVGKSFAY 111 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRN 123 L+P I A + VVST + LQ+Q+ KDLPLLK++ + K A GR Y+C R Sbjct: 112 LVPLIYRAVHSGRPAVVSTETINLQEQLIDKDLPLLKQLTGINFKAALAKGRHNYLCRRR 171 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L+ + A L ++ G DG RD D ++ + Sbjct: 172 FAMLSGEQRDTLLPAAGLAVDV------------TRLGKWMQRTTDGERDSIDFRLEPTV 219 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE--------A 235 W + ++ +CL C ++R C ++ AR+ ++A++VVANHAL + A Sbjct: 220 WSMVCSEGINCLGPKCEFFRNCFYYKARQAWEDADIVVANHALFFTDLGMRLASGGNGAA 279 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 P +++DE H L D A + L + L + + + Sbjct: 280 GSLLPNYGAVLIDEAHTLEDNAAEHLGLHLSRIGIVSTLNRLYNPEAARGLLMRKGAD-- 337 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 EL ++A + + ++ L E+ + + +L Sbjct: 338 -------------PELRGIVADARDEAYGFFKHFEDFLADHRETAL--EIQQPDRFPDRL 382 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 + L L++L + L + + L +++ L + + Sbjct: 383 SPHLLKLSKLLTDYLDDIDDASFRTELDAQLVRCREFLNGIDH---------FTHKTLPD 433 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 +A + + H + V+D L +L+ +++ SATL SF + Sbjct: 434 AVYYAESDRN----SISLHAAPLNVADILADVLFNQDFPVMLCSATLTVRRSFDYFVNRT 489 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 G R + LDSPF +Q I I R +P DN +A+ F + Sbjct: 490 GF---CNGRTLLLDSPFG-SDQAHIYISRGMPDPKDDNFNAALADEIPRFVE----VTQG 541 Query: 536 GMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL 591 VLF S ++ D + + LL+QG+ + + SVL G Sbjct: 542 KAFVLFTSYGTLRYCADALRGYFQEKGWQLLIQGENLTRTGL---LREFKEDVNSVLFGT 598 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 SF G+D+ G+ LS V + K+ F P++ ++ + F SLP A Sbjct: 599 DSFWTGVDVPGEALSNVIVTKLPFAVPSHPLIAARMARIERQGKSSFAEYSLPEAVLKFR 658 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 Q GRLIRS G +V+ DKR+++KNYG+ LD+LP Sbjct: 659 QGAGRLIRSRSDRGIIVLLDKRVISKNYGRIFLDSLP 695 >UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRT5_HALO1 Length = 729 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 187/728 (25%), Positives = 291/728 (39%), Gaps = 63/728 (8%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 ++ L+ P + R QR M VA+ LA + L +EA TG GKTL+YL+P Sbjct: 13 VERVLGPSGILRACTPHYEDRPEQRHMAHAVAEALAHQ--GALLVEAGTGTGKTLAYLVP 70 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTA 126 + K +V+ST ALQDQI D+PLL++I+P G YVC R L Sbjct: 71 ALL----SGKRVVISTGTRALQDQITRNDIPLLEEILPRQFTAVTLKGVSNYVCVRKLWD 126 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 +++ LA + + GD +A D +W Sbjct: 127 VSAR-------LAMAPEARRDYQTVAEWARDSPTGDRAELT--------AVADDAPIWAA 171 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP----DPKN 242 L+ + + C ++ +C ARR ++A++++ NH L A + + P P+ Sbjct: 172 LTNTPDTRIGPRCPFFEQCFITRARRRAEKADLIIVNHHLFFADLSLRSSYPGARVLPEY 231 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQ---------------LDLFTKLVATCM 287 +V DE H L DV + + + ++ + Sbjct: 232 EAVVFDEAHQLEDVMTEHFGVQVSTVRLAQLARDARHSSAGRNGPLFPNAQSSEKASDDD 291 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEA-----EHRFAMGELP 342 + +P T P ER+ AH E E PAG + FA + Sbjct: 292 DSPKPSTRPMETSTERIIAHLERCAEGFFISVRAALRESPAGDGGRVPLDDSLFADSDRQ 351 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 + + L +L A+ +D +E + AL ++++ Sbjct: 352 EAWFRLDSALDELAAHATLRADELASDSAEAAAYAIGEDNPGNADERAEALAAVAVRAEM 411 Query: 403 WR--LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 R LA LA+ S W + + VS L + L P I TSA Sbjct: 412 LRGDLALLAERSERAFVYWGEAR----ATSVGLCAAPVDVSAYLRKYLLPIAPAAIFTSA 467 Query: 461 TLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAE 520 TLR+ SF L++ GL + D +A+ SPF++ Q + +PR +P Sbjct: 468 TLRAAGSFDYLRQRLGLDSEIADE-LAVPSPFDYARQAILYLPRDLPDPRDAGFTAAACA 526 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKR 579 + VLF S RA++ + L +LVQG PR LVE R R Sbjct: 527 RVVEL----CAITGGRAFVLFTSHRALREAARRLLGTLPHEVLVQGQMPRAALVEQFRAR 582 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 +VL+G +F EG+D+ GD LS V + K+ F P P+V + ++S PFE Sbjct: 583 ----PGAVLLGTGTFWEGVDVPGDALSLVIVDKLPFAPHTDPLVRARVQRIESRGGAPFE 638 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 +P A+ L Q GRLIR G V + D R++T+ YG+ LD LP I + V E Sbjct: 639 GYQVPQAALALKQGFGRLIRRSDDRGIVAVLDPRIVTRRYGRAFLDTLPA-DITRTSVLE 697 Query: 700 GIVKKKEK 707 + + ++ Sbjct: 698 QVRRWWQR 705 >UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium RepID=A5TWB3_FUSNP Length = 822 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 163/729 (22%), Positives = 299/729 (41%), Gaps = 51/729 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L A L ++I F R Q +M + + E R + IEA TG GKTL Sbjct: 119 LEEVDIKNYFAKDGILAKEIKGFEYRKEQEEMAHYIQDAI--NEDRKIIIEAGTGTGKTL 176 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCP 121 +YLIP I A +K ++++T + LQ+Q+ KD+PL K II + + GR Y+C Sbjct: 177 AYLIPAIKWAVANKKKVIIATNTINLQEQLLLKDIPLAKSIIKEDFSYVLVKGRSNYLCK 236 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L+ + + + +E+ + K G + + Sbjct: 237 RLFNELSIG-------RSIDIETFSMEAREQIEYILKWGNK----TKTGDKAELPFEVYP 285 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA------ 235 D+W + + CL + C Y +EC + R E EA+++++NH + A + A Sbjct: 286 DVWELVQSTTELCLGKKCPYRKECFYMKTRIEKMEADILISNHHVFFADLNVRAETDFDS 345 Query: 236 -VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL-----DLFTKLVATCMEQ 289 L P+ +++ DE H++ VAR + + L + K + + Sbjct: 346 EYLILPRYDMVIFDEAHNIESVARSYFSVEVSKISFSRLLNRIYQKKNKRKKEKSALIRV 405 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEIC 349 L ++ L E I+ L NI + Y ++ + + Sbjct: 406 EDTIDEKDLEDSQQYIYLLNALKEEISVLQNIGDEYFEEIRKIYETNTEAPIRKSLNNFE 465 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGS--------HDIVRLHRLILQMNRALGMFEAQSK 401 ++ E LR ++F + L++ + + ++ N L MF+ Sbjct: 466 MTKSRFLETLRDKKDIFQSKLADFLTLMMSFNNVIDEEKDKNPEVINFNNHLKMFKTYID 525 Query: 402 LWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSAT 461 ++ + + W + + ++ + ++ +L +L+ ++ +I SAT Sbjct: 526 SFKFINSFE--DDNYIYWLDINSK--RTNVVLTATPLNIAKKLSSVLFDNLDRLIFASAT 581 Query: 462 LRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEM 521 + + +F+ ++ GL E+ + + SPFN+ EQ + IP + +N + + Sbjct: 582 IVANGNFNYFKKSLGLDEEDCIEAI-IKSPFNYDEQMSVYIPTDIQD--SENINAFVTDA 638 Query: 522 AAFFRKQVESKKHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQPRYRLVELHR 577 + F + K + +LF S + + + D + + GD+PR +L++ + Sbjct: 639 SKFILDILL-KTNGKAFILFTSYTMLNQIYYSISKKLIDKGFEVFLHGDKPRSQLIKEFK 697 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 + E +L G SF EG+D++G+ LS V I K+ F PVV + ++ Sbjct: 698 EA----ENPILFGTTSFWEGVDVQGENLSNVIITKLPFLVPTDPVVSAISKKIEEDGGNS 753 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPE 696 F LP A Q VGRLIR G + I D R+L K YG ++ALP I+ E Sbjct: 754 FTDFQLPEAIIKFKQGVGRLIRKKTDSGNIFILDSRILKKRYGSLFINALPSQKNIKILE 813 Query: 697 VPEGIVKKK 705 + I + + Sbjct: 814 KDDIIEEIE 822 >UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivorax RepID=Q0VQH3_ALCBS Length = 668 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 179/692 (25%), Positives = 279/692 (40%), Gaps = 78/692 (11%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 +P + PR PQ +M V + G L +EA TG GKTL+YL+P + + +V Sbjct: 37 LPGYQPREPQLEMADAVEDVIGS--GATLLVEAETGTGKTLAYLVPALL----SEGPTLV 90 Query: 82 STANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 ST +LQDQ++ KDLP++KK + K GR Y+CP L E Q+D Sbjct: 91 STGTKSLQDQLFFKDLPMVKKALNLPRKVALLKGRANYLCPYRL------ELHQEDARFL 144 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + + GD+ + I D +W +++ +CL C Sbjct: 145 TRETVGQMQIVSHWAARTRTGDIAELQQ--------IPEDAPVWPWVTSTADNCLGTECP 196 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL----PDPKNLLLVLDEGHHLPDV 256 Y ECP AR+E QEA++VV NH L A P ++ DE H LP++ Sbjct: 197 RYNECPLMKARKEAQEADLVVVNHHLFFADAALRGNGAASELLPTANTVIFDEAHQLPEI 256 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 A + Q + L+ A EL L+A Sbjct: 257 AAAFFADTLS--------------------TRQIQELGRDSLSEAGHTAADLAELNRLVA 296 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 +++ + + E R E+ E + + L + L+ L + FL L++ + Sbjct: 297 AVDKSSMDLRLSLGDGERREPWTEV-AENKAVIEAGEALLQALQEL-DAFLGPLAKASRG 354 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 D A ++ LA+ + W +R + H Sbjct: 355 MDACSR--------------RASEQVDCLAAYLKGGQPNRVYWFETFKR----SVVLHST 396 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + V+ QL R+ I+TSATL F +Q GL R + L+SPF+ Sbjct: 397 PLSVAAQLRAQRERNPCSWILTSATLSVGGRFEHIQHRLGLD---SARTLRLESPFDFKR 453 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT- 555 Q P P N+ ++ A++ A + + + LF S RA++ + Sbjct: 454 QAVFYAPEGLPAP---NDSEYTAQLTAAMVPVINAAR-GRTFFLFTSHRALREAAAILRQ 509 Query: 556 DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF 615 L LLVQG+ R L++ R++ +VL+G SF EG+D++G+ LS V I K+ F Sbjct: 510 KLDYPLLVQGEAGRRELLDAFREK----GNAVLLGTSSFWEGIDVRGEALSCVIIDKLPF 565 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 PV E + F LP A L Q GRLIR G +V+ D RLL Sbjct: 566 GSPGDPVAAARIEHINRNGGNAFRDYQLPQAVLALRQGAGRLIRDPKDTGLLVVADPRLL 625 Query: 676 TKNYGKRLLDALPVFPIEQ-PEVPEGIVKKKE 706 T++YGK +++LP + +V + Sbjct: 626 TRSYGKLFVNSLPNMTRTRKLDVVQRFFDYLA 657 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 176/714 (24%), Positives = 296/714 (41%), Gaps = 46/714 (6%) Query: 14 WYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 L + F R Q M+ VA+ LA EG+H +EA TG GK+L+YL+P IA Sbjct: 251 PGGPLAASLRGFEARPGQLAMVEAVAQALA--EGKHAMVEAGTGTGKSLAYLVPAALIAM 308 Query: 74 EEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEP 132 + +VVST ++LQDQI +D PLL++I +L+ GR YVC R + + A Sbjct: 309 ATGEPVVVSTHTLSLQDQIAERDFPLLRRIFGDELRLVVQKGRNNYVCLRKVRSEARL-- 366 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 E+ + L L + ++ LW R+ ++ Sbjct: 367 -----------STMATPVEDIQGIMALLVWLTETPDGTRETLSKSSVGPGLWARVQSESE 415 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 SC+NR C +++ C +F ++ Q A ++V NH+LVM+ + S+ + PK LV+DE HH Sbjct: 416 SCINRRCPFFQPCYYFRTKQAAQAAHLIVTNHSLVMSDLASDHRVL-PKYEHLVVDEAHH 474 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTK----LVATCMEQFRPKTIP--PLAIPERLNA 306 L + A + L + + + ++A + I L E Sbjct: 475 LEEQATNHLGFEVQSGVMAALAHRLVRDRGRAGVLAEVVRMLEELDIRGTTLESLEEGKE 534 Query: 307 HCEELYELIASLNNILNLYMPAGQ---EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 L + + + Y+PAGQ + + E E R + L+ L Sbjct: 535 WVGTLGAEVDAAFQAIAAYVPAGQSEARLDGAWRQTESFHAYREALDRTQAGVKRLQDLR 594 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 ++ + + R+ + L ++ WA + Sbjct: 595 ARLVDLVKSLPSDDHVGRVVDAAGFLGSWLDGIARMQEVL-------DEHPDDVTWAEVQ 647 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 ++ + H + V+ L++ L+ + +++TSATL F GL+E A + Sbjct: 648 TGGSRVRVSVHRAPVDVARVLKQHLFDPLRSVVLTSATLAVNGEFGFAIRKLGLEEHARE 707 Query: 484 RFVA---LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 V + SPF +Q ++ +P + + E+ + A E MLVL Sbjct: 708 DRVIARTVPSPFAMDKQARLFVPSDVPDIAAAPPEEAATWLTASITDLAE-ASRGRMLVL 766 Query: 541 FASGRAMQRFLDY----VTDLRLMLLVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFA 595 F S ++ + + L LL Q D R L+E R SV+ G Q+F Sbjct: 767 FTSHALLRETARLARAPLAERGLSLLAQDLDGSRAALLEAFRAH----PESVMFGAQTFW 822 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+DL GD L+ + I ++ F P PV E L++ + F SLP A Q VG Sbjct: 823 EGIDLPGDQLTSLVIVRLPFAPPTHPVTAARLERLEASGQNAFRALSLPEAVVRFRQGVG 882 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTK 709 RLIR+ G +V++DKR++T+ YG ++P + + + ++ + Sbjct: 883 RLIRTQQDRGVIVVFDKRIVTQRYGSMFWKSIPGLRPRVVPERDLVAEVRKFLR 936 >UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1QX31_CHRSD Length = 721 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 238/718 (33%), Positives = 341/718 (47%), Gaps = 38/718 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEG----------RHLAI 52 L + LKA I Y+ + + + PR QR MIA++A+TL G E + Sbjct: 9 LDSELKATIQTAYRRVLDSLE-LTPRYGQRLMIAEIARTLGGIESDDAGRRLSNEHVCVL 67 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTA 111 EA TG GKTL+YL+ + IA+ K LV+STA VALQ+Q+ DLP LK D +F Sbjct: 68 EAGTGTGKTLAYLLAALPIAQARGKRLVISTATVALQEQVLHHDLPALKAHSGLDFEFAL 127 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L L F + + + + Q ++ +W+G Sbjct: 128 AKGRGRYLCVARLDQALEGGEDNPTLSLFEEAMSSGDGDDFQALAQEMADAYSAGRWEGD 187 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RD IDD WRRL+ D C NR C ++ C FF ARR + +A+V+VANH LV+A + Sbjct: 188 RDSWPTGIDDADWRRLTIDHRQCTNRRCGHFGACAFFRARRGLDQADVIVANHDLVLADL 247 Query: 232 ESEA--VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 VLP PK+ + V DEGHHLPD A D + L K +A Sbjct: 248 SLGGGLVLPSPKDCIYVFDEGHHLPDKALDHFYHRLPVNGTL--RWLRTLKKSLAELNTA 305 Query: 290 FR---PKTIPPLAIPERLNAHCEELYELIAS----LNNILNLYMPAGQEAEHRFAMGELP 342 +PE + A L E A L A HRF MG +P Sbjct: 306 LGVQPTLARLLATLPEAIAALEPRLGEAFAMGHRLAEREEGLPDDATDAVHHRFPMGRVP 365 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI-----VRLHRLILQMNRALGMFE 397 + + E Q + L E + L E + + + G Sbjct: 366 EALSEQAQSMVTAFAELSRTLESMADILRESLDPEKATGLPREQAESWLPLVALLHGRAL 425 Query: 398 AQSKLWR-LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHII 456 LW+ +A+ + G P +W T E G L F + ++ L R LW + + Sbjct: 426 EAHALWQAMATPDPAEGIPQARWLTFERIAGDAELTFSASPVSAAETLARHLWGTCHGAV 485 Query: 457 VTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 VTSATL +LN F RLQE +GL R+ L SPF++ + + +P V+PS N E Sbjct: 486 VTSATLTALNRFERLQERAGLAN--RYRYQRLPSPFDYS-RAVLSVPPEAVDPS--NREA 540 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVEL 575 H + F + E + +L+LF+S + ++ L+ + + R ++ Q P+ L++ Sbjct: 541 HERALIDFTKALDEREA---VLMLFSSRKQLRAVLEALPETVRERVVAQNHLPKRELLQR 597 Query: 576 HRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR 635 HR RV GE S++ GL SFAEG+DL G+ L+ V I ++ F D PV T EW++S Sbjct: 598 HRARVDAGEGSIIFGLASFAEGIDLPGEYLTHVVITRLPFSVPDDPVGATLAEWIESRGG 657 Query: 636 YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 PF S+P AS L+Q GRLIR G + + D+R+LT+ YG+ LLD+LP F E Sbjct: 658 NPFMRISVPDASIRLVQACGRLIRKEADQGRITLLDRRVLTRRYGRALLDSLPPFRRE 715 >UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BE15_9GAMM Length = 704 Score = 475 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 202/708 (28%), Positives = 316/708 (44%), Gaps = 28/708 (3%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----------EEGRHLAI 52 L+ LK I + Y D R Q+ M+A VA+T E I Sbjct: 2 LSDDLKQSIQSAYTTYLNA-RDLKARHGQKHMLAQVARTFGTIELDEEGVRVSETPVGVI 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111 EA TG GKT+ Y + I IA+ K LV++TA VALQ+Q+ SKDLP +L Sbjct: 61 EAGTGTGKTIGYALSAIPIAQSLDKKLVIATATVALQEQVVSKDLPDILSNTDLQFNAVL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY+C L L ++ ++ + + + + + +W G Sbjct: 121 AKGRGRYLCTHKLEQLIQFYSGTVVAMSLFEETMEADEATLNQYNEMMTS-FGSGEWSGD 179 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RD +DD LWR L++ CLNR C +Y+ CPFF AR+ + +A+V++ANH LV+A + Sbjct: 180 RDQWPDKLDDSLWRTLTSSHRECLNRRCPHYQNCPFFEARKALDDADVIIANHDLVLADL 239 Query: 232 E--SEAVLPDPKNLLLVLDEGHHLPDVARDALE--MSAEITAPWYRLQLDLFTKLVATCM 287 A+LP P++ L V DEGHHLPD A M+ + + KL Sbjct: 240 SLGGGAILPAPEDTLYVFDEGHHLPDKALMHFANQMTVKYLLNQFDNWKKQLPKLRLELA 299 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD--EV 345 + + ++LNA E+L ++L + + +P + Sbjct: 300 YGDSSEFL-IDQFSDQLNAAHEQLSFAWSALQPWFHRLEETNDQLTLHQPEQLVPVSSIL 358 Query: 346 LEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE-AQSKLWR 404 + + + L + E LS T + RL + + R L E A+ + Sbjct: 359 EPLLSPMTGVYTSLTAIEESIRKRLSNTTDLDEKERLQNAMPLIGRWLSRTEPAKDLVSS 418 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 AP +W R L + + + L+ LW IVTSATL Sbjct: 419 WLQTDSPDYAPTARWMERINTPDVQDLSLNTSPVTANAVLKAYLWNRCCGAIVTSATLTV 478 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 F R +G+ + + + SPF++ ++P VE E H + Sbjct: 479 EARFDRFLAQAGISDA--AHLLQVPSPFDYPNLVTAIVPEFAVEGGAR--EAHSESIVRL 534 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANG 583 Q+ + L+LF+S M + + D + ++ +Q D P+ L+ HR+R+ G Sbjct: 535 IESQLPKETGN--LILFSSRAQMYEVYEALPVDWQDVITLQDDLPKTALIAHHRERLEEG 592 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 S L GL S AEG+DL G+ L+ + I K+ F D P+ T WL+S PF+V +L Sbjct: 593 AGSTLFGLASLAEGVDLPGNYLTHLVIAKLPFGVPDDPISSTLSLWLESKQLNPFQVVTL 652 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 P+A+ ++Q GRLIR G + + D+RL+TK YGK ++++LP + Sbjct: 653 PAATIRMVQACGRLIRHENDRGTIWVMDRRLVTKRYGKTIINSLPNYR 700 >UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3_9BACT Length = 661 Score = 475 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 193/702 (27%), Positives = 296/702 (42%), Gaps = 69/702 (9%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 +I + L + +F R Q++M VA L+ E RH+ IEA TGVGK+L+Y Sbjct: 14 PERVREIFSETGMLAKA-KNFEYRREQQEMAVSVATALS--EQRHVVIEAGTGVGKSLAY 70 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRN 123 L+P + A E +K VVST + LQ+Q+ KD+P+++K++P + + GR Y+CP Sbjct: 71 LVPAVLWALEHKKKAVVSTYTINLQEQLVYKDIPIVQKVLPVEFEAMLWKGRANYICPLR 130 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L +A + T Q E +R + DG + D + Sbjct: 131 LERA----------IAHAQELFTSPEQAELQRI----WEWAQTTQDGTLSDFSVEPDSSV 176 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM------AAMESEAVL 237 W ++ +++ C ++C +C + AR+ + A+VVV NH L A E Sbjct: 177 WAQVCSEQHICTTKSCGNNPKCFYQRARKRLLTADVVVMNHTLFFLNLGGIAEQEENESG 236 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 N ++ DE H + VA + + Y LQ + PKT Sbjct: 237 YLFANDFVIFDEAHTVEQVAAKQIGLGVSQYGLRYALQ------------RLYNPKTKKG 284 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 L R +E LI +++ + G + R PD V++ LT Sbjct: 285 LFQVHRNPNAVKETATLIEEVDSFFDKLGERGDFKKGREYRVRQPDIVMD------SLTA 338 Query: 358 MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 L L ++ + L L L ++ A +A+ + Sbjct: 339 PLAKLQQMVVETLRGIEDDLGKAELQDLGRRIRDA---------RSAIATFLKQEAEDHV 389 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS-FSRLQEMSG 476 W + + Q H H + V+ L LL+ I+TSATL N + + G Sbjct: 390 YWIEKTGKTQQYH-ALHAAPVDVAAYLRALLFPEGKCCIMTSATLSVGNEALTYFRNRVG 448 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 E + SPF++ Q KI + R +P E +AE F Sbjct: 449 ADE---VEARQIGSPFDYERQMKIYVTRKMPDPRDSGYEAALAEQIEHFV----GMSKGR 501 Query: 537 MLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGL 591 VLF S +AM + + DL LLVQG+ PR+RL+ +K ER VL G Sbjct: 502 AFVLFTSYKAMTNLASALRERLDDLDYKLLVQGEGLPRHRLISEFKK----DERHVLFGT 557 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 +SF G+D+ G+ LS V I ++ F D P++ E +++ F SLP A L Sbjct: 558 ESFWSGVDVPGEALSNVIITRLPFAVPDHPLIEARLELIEANGGDAFAEYSLPEAILKLR 617 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 Q VGRLIR+ G VVI D R+LTK+YG+ + ALP P+E Sbjct: 618 QGVGRLIRTKQDQGIVVILDNRVLTKSYGQAFMRALPKCPVE 659 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 188/740 (25%), Positives = 289/740 (39%), Gaps = 58/740 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + AL + A+ E I + R Q ++ V ++ +G HL +EA TG GK+L Sbjct: 237 IDPALVLSVLGSGGAISEAIAHYEHRPQQLELAEAVTRSF--NDGAHLLMEAGTGTGKSL 294 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRGR 117 +YL+P A AR + + +ST + LQ+Q++ KD+P L+ + ++ GR Sbjct: 295 AYLVPAFAWARANGEKVAISTHTITLQEQLWEKDIPFLQSALAGTPLEGVEAALVKGRSN 354 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y+C R A +E + GD G + Sbjct: 355 YICLRKWEEAAVGAD-----FLTSPEERRFLIRLAAWLAETETGDRSELNLSGEEE---- 405 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAMESEAV 236 WR + ++ +CL C ++R C F ARR ++A+V+V NHAL+ A + + Sbjct: 406 ----RFWRTVQSETETCLGPKCKWFRSHCFAFRARRRARDAQVLVLNHALLFADIAAGNQ 461 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEM---SAEITAPWYRLQLDLFTKLVATCMEQFR-- 291 + P L++DE HHL VA L + S +IT L L+ + Sbjct: 462 VLPP-FRHLIIDEAHHLEAVATQNLGVNLESWDITGALLLLYRAPGQGLLPQLRRRLGRG 520 Query: 292 -------PKTIPPLAIPERL-------NAHCEELYELIASLNNILNLYMPAGQEAEHRFA 337 P +P + ++L A +EL+ L A L G R Sbjct: 521 EAIPARPPVGLPSEDLIDKLVGLVQHCRAATDELFRLCADLVEARGRSEEEGGARALRLT 580 Query: 338 MGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE 397 + E ++ L L+E D L ++ Sbjct: 581 DAVRTGPLWEALEQARANAVHRLRTLAAGLALLAEALELQDPPLADADALLVDIQKQNGI 640 Query: 398 AQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIV 457 + + W +R +L + I V D L L+ + +I+ Sbjct: 641 LIQSTKAIDRVLLEPAEGEVTWIESAQRGDRLRVALRAAPINVGDILRADLFGRMRSVIM 700 Query: 458 TSATLRSLNSFSRLQEMSGLKEKAGDRFV--ALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 TSATL SF+ L+E GL DR L SPF + EQ +++P P E Sbjct: 701 TSATLTVGESFAHLKERLGLSRLPPDRLREGVLSSPFAYREQALLLVPEDLPNPK---EG 757 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-----LRLMLLVQGDQPRY 570 F R+ + LVLF S R +++ + D L+L D R Sbjct: 758 DFTQAAVDFLRRFLIQA-GGRTLVLFTSHRQLRQVYQALKDDLEAEGLLLLGQGLDGSRS 816 Query: 571 RLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL 630 RLV R GER+VL G SF EG+D+ G+ LS V + ++ F P D PV+ E L Sbjct: 817 RLVAEFRA----GERTVLFGSASFWEGVDIPGEGLSAVVMVRLPFNPPDDPVMEARIEDL 872 Query: 631 KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK--NYGKRLLDALP 688 + F SLP A Q GRLIR+ G G V++ D RL + YG + L +LP Sbjct: 873 ERRGLSSFAHLSLPQAVIRFKQGFGRLIRTRGDRGVVIVLDNRLSPRGSRYGLQFLRSLP 932 Query: 689 VFPIEQPEVPEGIVKKKEKT 708 + + E I + Sbjct: 933 GPAVFRGRTDEVINRAMAWL 952 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 171/724 (23%), Positives = 293/724 (40%), Gaps = 49/724 (6%) Query: 7 LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 + L+ ++ + R Q QM V ++L G H+ IEA TG GK+ +YLI Sbjct: 235 WIESCFSSGGILENKLKSYESRLGQLQMAKAVGESLTGST--HIVIEAGTGTGKSYAYLI 292 Query: 67 PGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLT 125 PG+ +++ K +VV+T + LQ+QI+ KDLPLL +++P + G+ Y+C + + Sbjct: 293 PGLWWSKKTGKKVVVATHTIPLQEQIFKKDLPLLAQVLPFSFRGALLKGKSNYICLKRWS 352 Query: 126 ALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWR 185 E GD I + LW Sbjct: 353 FTLGVTAE------LAPGERLALLSVMVWLRETTTGDWQEVSQ--------IPSLNKLWG 398 Query: 186 RLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLL 245 L+ ++ SC+ C + C +R+ +EA++++ NH+L+ + +++E P+ L Sbjct: 399 SLNCEEESCIPGKCSHANRCYMLQSRKRAEEADLIIVNHSLLFSDIKTEKN-ILPEYHEL 457 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFT---------KLVATCMEQFRPKT-- 294 ++DE HHL A + L + L L + K A E+ Sbjct: 458 IIDEAHHLHQAALEQLGNEISLEQISRVLNLLSRSMAGSFYGNVKARAQVWERLLSVALW 517 Query: 295 IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK 354 E+L C+ELY+ L + G E +R + + + Sbjct: 518 ERFRGYLEKLPEACDELYQQAEELFATFAQIV--GNELSYRLTVHCHQESWWPTVAVQIE 575 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 + L + + D L +++ + E + + LA Sbjct: 576 NLLGRLKIITDLLKAMLNLLDAQDDEDSAALAHEISGRIRNLEEMRECFVLAQQVDQ--P 633 Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEM 474 W + R + + VS+ L+ L+ + ++TSAT+ NSF Sbjct: 634 TRVSWLEQSNR-----ILLKTSPVDVSNLLKEKLFAPLDCAVLTSATISIANSFQHFLRE 688 Query: 475 SGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 GL E + +DSPF++ Q ++++ + V+ + E A F +V + Sbjct: 689 IGLDESTPS--LLVDSPFDYERQMQLLVVKDLVDVKHCDL--FNTEEVALFISEVTERMQ 744 Query: 535 LGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 LVLF S R ++ Y+ + LL QG + + + N RSVL+G Sbjct: 745 GRTLVLFTSHRFLREIHLPLSRYLGGSGIELLAQGIDGGRQAI---LEAFLNNSRSVLLG 801 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 SF EG+D+ GD LS V + K+ F P + P++ E+L++ R PF LP A Sbjct: 802 ASSFWEGIDIPGDALSCVILVKLPFGPPNRPLIAARSEYLEAQGRNPFYEFLLPEAVLRF 861 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 Q GRLIRS G V++ D R++ K YG+ L +LPV + + + K Sbjct: 862 KQGFGRLIRSKSDRGLVILCDGRVIHKRYGRHFLSSLPVKTHIRTSRSQILDKIDLWFDE 921 Query: 711 PRRR 714 ++ Sbjct: 922 EYQK 925 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 168/729 (23%), Positives = 284/729 (38%), Gaps = 63/729 (8%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + + AL + R Q +M VA T +G L EA TG GK L+YL+P Sbjct: 238 RFFSPDGALGRAFAGYEQRDQQVRMSEAVADTF--NQGGALIAEAGTGTGKGLAYLVPAA 295 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD------LKFTAAFGRGRYVCPRN 123 A + +V+ST + LQDQ++ KD+P L++++ + GR Y+C + Sbjct: 296 LHAARRGERVVISTNTINLQDQLFFKDIPALQQVMSNGADEAPFTAALLKGRSNYLCLKR 355 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L + + D++ + + GD ++ Sbjct: 356 YKDLRRDQR-------LMSDDVRALLKVQLWLPTTESGDRAELPL--------HEGENAS 400 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL 243 W R+S C C ++ C FF AR++ + A +V+ NHAL+MA + E + P Sbjct: 401 WNRMSAAWEQCTGPRCSEFQRCFFFKARKQAEAAHLVIVNHALLMADLAVENDVIPP-YD 459 Query: 244 LLVLDEGHHLPDVARDALEMSAE-------ITAPWYRLQLDLFTKLVATCMEQFRPKTI- 295 L++DE H+L DVA D L + + + + Q + L++ FR Sbjct: 460 YLIIDEAHNLEDVATDQLSFNVDREGLLAFLDDIFTEGQAQVVGGLLSELPNHFRESMAT 519 Query: 296 -----PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQE---AEHRFAMGEL---PDE 344 AI + L + + N+L ++ E + R + + Sbjct: 520 RTDIDRADAIADTLRPAVARARDAVYGCFNVLMTFIKREAELTAYDSRLRITDSLRRKPS 579 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 E+ + L+ L + E + D L L + A Sbjct: 580 WAEVERAWDALSVALHAVGEGLGRLETLLIDLKDAELLEYDALMLRVQALRRYATDVRVN 639 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 + + W T + + L + V+D L L+ + I+TSATL Sbjct: 640 IGHILTGGAEEKVTWLTHDRM--RDTLTLSAAPLSVADVLRTNLFEAKTATILTSATLSV 697 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 +F+ ++E GL + LDSPF++ Q + IP+ EP+ + ++ + + Sbjct: 698 GGNFAFIRERIGLDHAEE---LTLDSPFDYTRQALLYIPQDIPEPNQNGYQRALEQAIID 754 Query: 525 FRKQVESKKHLGMLVLFAS----GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRV 580 + MLVLF + + + + + D + +L QG R + +R Sbjct: 755 LAR----ATGGRMLVLFTATNALRQTYRAIQEPLEDAGIAVLGQGIDGSRRSL---LERF 807 Query: 581 ANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV 640 +VL+G SF EG+D+ GD LS + I K+ F P+ E PF Sbjct: 808 KEFPGTVLLGTSSFWEGVDVVGDALSVLVIAKLPFSVPTDPIFAARSEQFD----DPFNQ 863 Query: 641 QSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 ++P + Q GRLIRS G V + D+RLLTK YG+ L++LP + + Sbjct: 864 YAVPQSILRFKQGFGRLIRSREDRGVVAVLDRRLLTKKYGQMFLESLPHTTVRSGPLQRL 923 Query: 701 IVKKKEKTK 709 K Sbjct: 924 PDLAKRFLA 932 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 473 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 158/722 (21%), Positives = 296/722 (40%), Gaps = 47/722 (6%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 I L E + + RA Q++M + H IEA TG GK+L+YL+P Sbjct: 241 DTIYEDGGKLSEHLSMYEKRAGQQEMSETIYDAFTS--SNHALIEAGTGTGKSLAYLLPA 298 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 + A ++ + +++ST LQ Q+ +++PL+ I + G+ Y+ + Sbjct: 299 VYYAVKQNQKVIISTHTTQLQSQLLEEEIPLIHAISDIPFQAALLKGKNHYISLEKFSIE 358 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + +A L E GD++ + +R++ Sbjct: 359 LYEQGQDNYDIALTKAMLLIWITETN------TGDVEEVQL--------PTSGYIFFRKI 404 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 S D +N +++ + AR++ Q A +++ NHAL+ M ++ P +++ Sbjct: 405 SADTEKAVNPQSPWFQYSYYQQARKKAQRANIIITNHALLCTDMFNDYAFL-PSYQRVII 463 Query: 248 DEGHHLPDVARDALEMSAEITAPWY---RLQLDLFTKLVATCME--QFRPKTIPPLAIPE 302 DE HH + A + + + + +L KL ++ Q IP + Sbjct: 464 DEAHHFEEQAAHHYGLKMDYMSMQFTCNQLGSSEEDKLFGNFVQAYQLSNSDIPLYEWND 523 Query: 303 RLNAHCEELYELIASL----------NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRL 352 L + +E+ +L ++ N L+ + G+ +L++ RL Sbjct: 524 TLKSAKQEIEDLFQAIYYYVSKQHLSNQALSDVGRIQYRMDTEKETGDSWQVILDMSSRL 583 Query: 353 AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 + L + + ++++ S R +LQM L + +L Sbjct: 584 SLYFRDLIHILFMVEQRINQEDNSEKNHREE--LLQMVELLQRYIDGLELM----FYSGG 637 Query: 413 GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ 472 KW +++ ++ + V++ LE + +++TSATL +SFS +Q Sbjct: 638 EVEQIKWIEIDKKGQNHSVFLYSEPADVAELLENEFFHEKESVVMTSATLTMNHSFSFMQ 697 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 + GL + ++SPF + +Q ++ IP + N + + +A E Sbjct: 698 KRLGLSSHSCI-TEQIESPFAYDQQVQMFIPNDFPDIKYGNIDDFVYAVAEAIISLAE-I 755 Query: 533 KHLGMLVLFASGRAMQRFL----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVL 588 MLVLF S +++ + + + ML+ QG R +K + ++++L Sbjct: 756 TSGRMLVLFTSYDMLRKAYYVLKEAMEKDKYMLIGQGITSGSRA--RLKKNFQSFDQAIL 813 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 +G SF EG+D+ GD LS + I ++ F P + PV+ + LK + PF SLP+A Sbjct: 814 LGTSSFWEGVDIPGDDLSSLVIVRLPFQPPNHPVIEAKSAMLKKQKQNPFMELSLPNAVI 873 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 Q GRLIRS G V + D R++ YGK +++P PI + I K ++ Sbjct: 874 KFKQGFGRLIRSSNDRGIVFVCDARIVNARYGKYFTESIPKVPIHYDSTHKLIDKAEQWY 933 Query: 709 KS 710 K Sbjct: 934 KK 935 >UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax=Gammaproteobacteria RepID=Y387_HAEIN Length = 640 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 164/695 (23%), Positives = 273/695 (39%), Gaps = 75/695 (10%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 A I + L + I F PRA Q +M V K + + L IEA TG GKT +Y Sbjct: 4 ENQIANIFSLNGELSQNIKGFRPRAEQLEMAYAVGKAIQNKSS--LVIEAGTGTGKTFAY 61 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCPRN 123 L P + K ++ST + LQDQ++++DLP +KK + K GR Y+C Sbjct: 62 LAPALVF----GKKTIISTGSKNLQDQLFNRDLPAIKKALNFTGKIALLKGRANYLCLER 117 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L + + + ++ +K++ ++ K + ++A D + Sbjct: 118 LDQVIA--------------QGVLGDKSVLAELSKVRKWNNSTKTGDFTECIELAEDSPI 163 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDP 240 +L++ SCL +C Y EC AR++ A++VV NH L A M S P Sbjct: 164 IPQLTSTAESCLGTDCPNYSECYVASARKKALNADLVVVNHHLFFADMAVKESGFGELIP 223 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 +++ DE H LPD+A S ++ + + L Sbjct: 224 NAEVIIFDEAHQLPDIASQYFGQSLT-------------SRQLFDLCKDINIVYRTELKD 270 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 ++L + L +++ +L + + + +++ L+E+++ Sbjct: 271 MQQLGTTSDTLLKVVQDFRLLLGNGSNVRGNWRELYTQSAVKKAFELLQEKIDFLSEVIK 330 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 S + + + + +L L++++ W Sbjct: 331 LALGR----------SQTLDSIFERVESIKI------------QLKRLSETNIVGYCYWY 368 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 R+ H + V+D+ L I TSATL +F+ + G++ Sbjct: 369 EGNGRQ----FGLHITPLTVADKFGAQLEAKEAAWIFTSATLEVGGTFNHFCQRLGIENA 424 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 L SPFN+ EQ + +PR + N V VL Sbjct: 425 TQK---ILYSPFNYPEQSLLCVPRYLPNTNQMN----TLNSLGEILLPVIEANKGRCFVL 477 Query: 541 FASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 S M+ +Y + L +L+QG+ + +L+E K SVLV SF EG+D Sbjct: 478 CTSYSMMRGLAEYFREKSHLSILLQGETSKGKLLEQFIKE----THSVLVATSSFWEGVD 533 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 ++GD LS V I K+ F D P++ E + PF +P A L Q VGRLIR Sbjct: 534 VRGDALSLVIIDKLPFTAPDEPLLKARIEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIR 593 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G V+I D RL+ +NYG+ L +LP + Sbjct: 594 DVTDRGVVIICDNRLVMRNYGETFLKSLPNSSRTR 628 >UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CXN9_MYXXD Length = 662 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 178/707 (25%), Positives = 271/707 (38%), Gaps = 82/707 (11%) Query: 1 MALT---AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTG 57 M+L+ + AL+ +P + R Q QM V + A E +L EA TG Sbjct: 1 MSLSVSTPPSVDSLLGPGGALEVALPAYEHRPEQLQMARAVERAFA--EHSYLLAEAGTG 58 Query: 58 VGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRG 116 GKTL+YL+P + + +VVSTA LQDQI+ KDLPL++ K+ + GR Sbjct: 59 TGKTLAYLVPALL----SGRRVVVSTATKTLQDQIFFKDLPLMREKMGLRFEAAYLKGRS 114 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 Y+C A + ++EE + KLK + G R D Sbjct: 115 NYLCLHRYDAFSKAP--------------QFGSREESRYWPKLKAWAEETD-TGDRSELD 159 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---- 232 + W RLST +C+ C Y C R+ ++A+++V NH L A + Sbjct: 160 LPESFSAWSRLSTTSETCVGTRCPQYETCFVTRMRKRAEQADLLVVNHHLFFADLALRSS 219 Query: 233 -SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 P ++ DE H L D A S +L + + Sbjct: 220 GKRTEGVLPWYEAVIFDEAHALEDAASGHFGCSVS---------NYRLEELARDAVASLK 270 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 + L A L L A M +L + + Sbjct: 271 EDDARHAMLRALAARLRAGADALFAQAPRALGLSGHEASVALRAEVMAKLSTPLEGVRDA 330 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 LA L+ G E ++ + R +M L E Sbjct: 331 LAALSAFTVGERE------------PELAAITRRSDEMEEQLSFLEKAES---------- 368 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 + WA + + L+ I V+ +L ++ ++ ++ TSATL + + F Sbjct: 369 --SDHVYWAEQRGKG----LFLRASPIDVAKELRERMYGALDTVVYTSATLAADSRFDFF 422 Query: 472 QEMSGL-----KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 GL + R +A+ SPF++ Q + +P +PS + AE Sbjct: 423 ANRMGLYGEDGQPVTRVRTLAVPSPFDYPSQAALYLPTHLPDPSAPGFIEEAAEEIERL- 481 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGER 585 VLF S R M R + V L L+QG++P+ +L+E R+ Sbjct: 482 ---CEVTGGRAFVLFTSLRNMVRAYELVAPRLPYQSLLQGERPKQQLLEAFRE-----TP 533 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 SVL SF EG+D+ GD LS V I ++ F P+V L+ PFE LP Sbjct: 534 SVLFAAHSFWEGVDVPGDALSLVIIDRLPFASPGDPLVAARINQLQQRGEEPFEQYQLPH 593 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 A+ L Q GRLIR+ G V + D+R++TK YG+ LD+LP Sbjct: 594 AALALRQGFGRLIRTQSDRGIVAMLDRRIVTKAYGRVFLDSLPPARR 640 >UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLQ3_SYNFM Length = 646 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 169/692 (24%), Positives = 265/692 (38%), Gaps = 69/692 (9%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 + L E + F R Q +M V + L L +EA TG GKT +YL+P Sbjct: 1 MRRYFGPDGLLAENVTHFEFRPSQLEMAEAVLEALGARSP--LVVEAGTGTGKTWAYLVP 58 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTA 126 I K VVST LQDQI +D+P LK+ + P L+ GRG Y+C R Sbjct: 59 AIL----SGKRTVVSTGTKTLQDQILDQDIPFLKRTVYPKLRAVCLKGRGNYLCHRRFKD 114 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + + DE ++ ++ GD W + W Sbjct: 115 FS------YQPTLWNKDEAKLWSRFQKWATRTRTGDRAEISW--------LPDQFHTWNE 160 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV---LPDPKNL 243 + + CL + C + C R E +A +VV NH L A + P+ Sbjct: 161 VCSAGEHCLGQQCSDVQRCFVTRLRAEAAQAHLVVVNHHLFFADLALRDKADTGVLPEYD 220 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 ++ DE H L DV + +L +F+ +T + Sbjct: 221 AVIFDEAHQLEDVMGQYFGIQFNSYG---------LMELTRVLQREFKKETGASHRFHD- 270 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 + + + LN +L+ ++ + ++ RF + ++ Q +L L LA Sbjct: 271 ----ARRIVQQLEVLNRLLHRHLFEVRGSQGRFPL-DMSRMGKNFVQSCNQLIHALDELA 325 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 + R + R L + W Sbjct: 326 PMIAPAEDLPLSFEAYHRRASDLSGAVRML---------------LAQEDESLVYWYEV- 369 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 GQ L+ + I V R + +I+TSATL SF +++ G+ + Sbjct: 370 ---GQNALFLNATPIEVCSIFRRRVLTPNRPVILTSATLSVAGSFDFVRQSLGIAPDS-- 424 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + + L SPF + EQ + IPR P+ + + IAE + K L LF S Sbjct: 425 KSIRLPSPFAYAEQTMLYIPRRFPAPNEHDFCRQIAEQSVEIL----LKTRGRALFLFTS 480 Query: 544 GRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 R M + D L +LVQG +P+ L+ ++ + SVL SF +G+D+ G Sbjct: 481 YRNMNEVHQLLRDRLPYPILVQGQKPKRALLAEFKESI----GSVLFATSSFRQGIDVPG 536 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + LS + I K+ F D P+ +++ + F +P A L Q VGRLIRS Sbjct: 537 EALSCLLIDKLPFEVPDDPLAAARMDFITRQGKSSFFGYQVPRAVIQLKQGVGRLIRSSS 596 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G +VI+D RLL KNYG+ L +LP + Sbjct: 597 DRGLIVIFDVRLLQKNYGQIFLKSLPPCRLVH 628 >UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2A4_PROVU Length = 688 Score = 472 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 205/709 (28%), Positives = 330/709 (46%), Gaps = 45/709 (6%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVA---KTLAGEEGRH-------LA 51 A IA Y++ ++ R Q++M+ ++ ++ + Sbjct: 3 KPKPATSEIIAKAYQSFLDK-KGVTARMGQKRMMNLCYGLVNSIKVDDSGNRTSAPAVCV 61 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFT 110 IEA TG GKTL Y IP I +A+ ++KTL++STA VALQ+Q+ KDLP ++ D F Sbjct: 62 IEAGTGTGKTLGYSIPLIPLAQAKEKTLILSTATVALQEQVVHKDLPDIRASAGLDFTFA 121 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 A GRGRY C A + +L F D+ + L + D W+G Sbjct: 122 MAKGRGRYFCKLR---AAREAEKEMELFGFQDETIKI-----------LTDEFDDDLWNG 167 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 RD + I D +W++ + C +C +++ CPF+ AR E+ +V++ANH +VMA Sbjct: 168 DRDTYPVEITDKIWQKANAVAGQCPAHHCPHFKSCPFYKARDEMDSVDVIIANHDIVMAD 227 Query: 231 ME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME 288 + VLP+PKN + V DEGHHL A + + A D +V ++ Sbjct: 228 LSLGGGVVLPEPKNCIYVFDEGHHLTSKAISHFSSTCSLDAAI--KWSDEIFDMVIPLVD 285 Query: 289 QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHR----FAMGELPDE 344 + LN+ EL + + L +P E ++R F GE P E Sbjct: 286 SYDDNME---RYATTLNSLASELKKELVLTKEFLLRNLPFKGEYDNRQTCIFPRGETPHE 342 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 V+ + + K+ E L+ + +K + ++ +++ L + Sbjct: 343 VIHYAKTVGKVLEELKNTNGKMTAIIEDKAKGPEGGEHKMIVGELDNKLSTLVTAWAQFV 402 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 + G P +W R+ + + + + + L+ ++W+ I+TSAT+RS Sbjct: 403 NVNKRDKQGIPFARWVDVN-RDKKNEIVINSSPVHAGEMLKSIVWKDAHAAIITSATIRS 461 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 L F + +GL + SPF++ G + IP+M+ P + H E+ + Sbjct: 462 LGKFDAYLDQAGLPADTP--TLLAQSPFDYENNGVLFIPKMKFSPK--DSAAHTTEVGSL 517 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANG 583 V K G LVLFAS + M + + D ++ +L+QG P+ +V H+ R+ G Sbjct: 518 LPTLVLRK--RGCLVLFASKKQMTEVFEMMPDDIQDKILMQGSIPKSEIVSRHKLRIDRG 575 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 + S++ G+ SF+EG+DL GD + V I K+ F PV +T EW++S+ R FE S+ Sbjct: 576 DDSIIFGMSSFSEGVDLPGDYCNNVIIAKLPFMVPTDPVSLTLAEWMESVGRNTFEEISV 635 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 P A LIQ VGRLIR+ G V I D RL+TK YG +LD+LP F Sbjct: 636 PDACIKLIQSVGRLIRTEQDTGAVTILDNRLVTKRYGAGILDSLPPFKR 684 >UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV Length = 725 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 226/731 (30%), Positives = 332/731 (45%), Gaps = 49/731 (6%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGR---------HLA 51 MALT +K QI Y+ + D R QR MIA++A+ + Sbjct: 1 MALTEDVKQQIQQAYRDVLAG-KDIRARYGQRLMIAEIARYMGEITDNDGQRTSPPATCV 59 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 +EA TG GKTL+YLI I +A+ KTLV+STA VALQDQI KDLP L+K D +T Sbjct: 60 VEAGTGTGKTLAYLIAAIPVAKALGKTLVISTATVALQDQIVLKDLPDLRKHSKLDFSWT 119 Query: 111 AAFGRGRYVCPRNLTALASTEP--TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW 168 A GRGRY+C L A E + FL D+ + + + + W Sbjct: 120 LAKGRGRYLCMSRLEARLHDEGHGDSDTMPLFLLDQPVDDEARSRATFENMLASYGSRDW 179 Query: 169 DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM 228 DG RDH I D++WR+++TD C NR+C Y+ C FF AR+++ +A+VVVANH LV+ Sbjct: 180 DGDRDHWPEQIPDEIWRQVTTDHRQCTNRHCAYFDSCAFFDARKDLDDADVVVANHDLVL 239 Query: 229 AAME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMS--AEITAPWYRLQLDLFTKLVA 284 A + A+LP+P+N L + DE HHLPD A + S T W + K+ Sbjct: 240 ADLALGGGAILPEPENALFIFDEAHHLPDKALNHFAASVPLNSTRQWLKQLSQALVKMQP 299 Query: 285 TCME--QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 Q L+ +YE + N + + A+ R+ G LP Sbjct: 300 WLPAGSQAAKAVEKISTAGRDLDLALTRVYEEVEQ--NTGWEFNEERRSAQWRYPDGALP 357 Query: 343 DEVLEICQRL----AKLTEMLRGLAELFLNDLSE-KTGSHDIVRLHRLILQMNRALGMFE 397 +++ E+ A L L L + + E K D + E Sbjct: 358 EKLAELAGETRIATAGLCRHLGTLVDELQSAFDERKDPELDRDTADSWYPVVGSFHARAE 417 Query: 398 AQSKLW---------------RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSD 442 Q +LW + G P +WA R+ + + + + Sbjct: 418 DQLRLWIAWSEGVAIVSDEEEPVVEAPARKGPPAARWAVRQRWDHAEDITLFSSPVLADN 477 Query: 443 QLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI 502 L LW ++TSATL +L F RL+ +GL E + R++ + S F + E + + Sbjct: 478 LLYSRLWSRAYGAVLTSATLTALGRFDRLRSRAGLPEAS--RYLVVPSSFRYAEMATVEV 535 Query: 503 PRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLML 561 P M P+ D + + LVLF S R MQ+ D + + ++ Sbjct: 536 PAMVAMPTDDGFADALVKRLPELW-----AGEKATLVLFTSRRQMQQVRDALAPEYPELI 590 Query: 562 LVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSP 621 L Q D + ++ +H RV G+ SVL G+ SFAEG+DL G L V I ++ F D P Sbjct: 591 LTQDDMAKNEVLRVHCSRVDEGKPSVLFGVASFAEGIDLPGRYLHHVVITRLPFSVPDDP 650 Query: 622 VVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGK 681 + + EW+ PF ++P AS L+Q VGRL+R+ G V I D+R++ + YG+ Sbjct: 651 IEASLAEWVTQRGGNPFMEITVPDASVKLVQAVGRLLRTEQDTGRVTILDRRIVARRYGQ 710 Query: 682 RLLDALPVFPI 692 LLDALP F Sbjct: 711 LLLDALPPFRR 721 >UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTY2_HALHL Length = 711 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 229/717 (31%), Positives = 345/717 (48%), Gaps = 35/717 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLA-IEAPTGVGKT 61 + IA Y+ +++++P F R Q++MI +VAK + L IEAPTG GK+ Sbjct: 2 PEPDITDTIATAYRRVRDEMPGFREREAQKRMIWEVAKAFDADHPHRLLAIEAPTGTGKS 61 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYVC 120 LSYL+ G+ +AR LV++TA V LQ+QI +DLP L + ++ T A GRGRY+C Sbjct: 62 LSYLLGGVPVARSRDLPLVIATATVGLQEQILHQDLPKLARYAGIEVDATVAKGRGRYLC 121 Query: 121 PRNLTALASTEPTQQD--------LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 PRNL L + + P E ++ + LD +W G Sbjct: 122 PRNLNELVGQSGQAESGAQQALAGEVLGTARWPRPPQPGEPEQLQAMAEALDGERWGGDL 181 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME 232 D + DDL +++ SC R C ++ CP + AR + AEVV+ NH L++A ++ Sbjct: 182 DEWADGVADDLRPMITSTSHSCSGRRCAHFEGCPVYAARDRVARAEVVITNHDLLLADLQ 241 Query: 233 -----SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVAT 285 +LP P+ L V+DEGHHL A SA + A W + T A Sbjct: 242 LGEEQGGVLLPPPEQALYVIDEGHHLAAKAVQRFAASARVQAARTWLEEGEGVATDTAAV 301 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILN-LYMPAGQEAEHRFAMGELPDE 344 + PP A +RL E+ + + L Y + RF G+ PD Sbjct: 302 LPDD--TAGEPPDAEAQRLQERLSEVAAALQEADTFLQHNYRADAEGERWRFRAGQAPDP 359 Query: 345 VLEICQRLAK----LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS 400 V E+ R+A L E L+ + + L + G D L R + ++ + Sbjct: 360 VRELAGRVADPARGLHEALQAFTDRVYSALEAQRG--DTQELERQLPRLGFLRERAANLA 417 Query: 401 KLWRLASLAQSSG-APVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 W+L +++G PV +W R+ E +G + + V+ +L R LW ++T Sbjct: 418 TTWQLLGEQEAAGVPPVARWVERQAESDGAVDHRVSVSPVSVAGELARRLWDRCAGAVIT 477 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVA-LDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 SATLR+L F L+ GL E L SPF++ + + +P +R +P N E H Sbjct: 478 SATLRALGRFDHLRSDLGLPEDDALISQGWLPSPFDYS-RSLLHVPALRSDP--RNAEAH 534 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELH 576 +AE+ + + ++ + LVLF S + M+R + + LR L QG++ R ++E H Sbjct: 535 LAEVCQWLPELLD--PYEAALVLFTSRQRMERVAQALPETLREQLQCQGERSREAMLERH 592 Query: 577 RKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 R+ V G+ S+L GL AEG+DL G V I +I F PV+ T GEWL+ R Sbjct: 593 REAVDAGQGSILFGLAGMAEGVDLPGRYCDHVVIERIPFGVPTEPVIATLGEWLEDQQRS 652 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 F SLP AS LIQ GRL+RS G + I D+R++T+ YG++LLDALP F Sbjct: 653 SFHTLSLPRASLRLIQACGRLVRSEDDRGRITILDRRVVTQRYGRQLLDALPPFRRR 709 >UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_ACIBL Length = 674 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 165/715 (23%), Positives = 268/715 (37%), Gaps = 87/715 (12%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 +Q L + P + R Q QM V + L E RHL +EA TG GKTL+YL+P Sbjct: 21 SQFFGPGGVLAKSHPAYEFRRGQLQMAQAVEQALT--EKRHLIVEAGTGTGKTLAYLVPV 78 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII------PDLKFTAAFGRGRYVCPR 122 I +++ST LQ+Q++ KD+P L++ I LK GR Y+C + Sbjct: 79 I----RSGLRVIISTGTKNLQEQLFYKDVPFLERAIFGAESDQKLKVCYMKGRNNYLCRK 134 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L L+ D N EE + +++ + T + Sbjct: 135 KLYDLS--------------DRPVLNGLEEIDQFRQIREWEAVTTTGDRAELTAVPEASL 180 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA------- 235 LW +L +C+ C + C RR E+++++ NH L A + + Sbjct: 181 LWPKLDARADACVGSKCKDFERCFITEMRRTAMESDIIIVNHHLYFADLAIKQAADGAPD 240 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 V P+ ++ DE H L DVA +SA Sbjct: 241 VGILPEAAAVIFDEAHELEDVAGSYFGVSASNVRVD--------------------DLVR 280 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 + + L + L+ + E RFA + + E + L Sbjct: 281 DVEFAIKEFHIASPTLLQASQRARERSQLFFSLVPQGEGRFAFENRKEFLEENGEEFLAL 340 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 L L + ++ R + +L+ L +S+ Sbjct: 341 QNALGHLYSEIQALKEKPDELFNLARRTEELRV---------------QLSFLLESNDKN 385 Query: 416 VTKWATREEREGQL-----HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 W R + +++ I VS L+R L+ ++ ++TSAT+ F Sbjct: 386 TVYWVERRGESRRAGRQGHNVFLQATPIDVSAILQRTLFANLNTAVLTSATIAVGGGFQY 445 Query: 471 LQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 + GL++ R + + S F++ Q +P +P EQ + AA +Q+ Sbjct: 446 ARGRLGLQD---ARELVVPSHFDYETQAVFYVPPDMPDP----REQLFSRKAADRIRQLL 498 Query: 531 SKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLV 589 LF S M D + +L +L QGD P+ L+E R +VL Sbjct: 499 EITRGRAFCLFTSYAQMNDVYDRLLGELDYPMLKQGDAPKSALLEEFR----TTPGAVLF 554 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 SF +G+D++G+ LS V I ++ F + PVV + + F +PSA Sbjct: 555 ATSSFWQGVDVQGEQLSCVIIDRLPFAVPNDPVVAARIRAIDADGGNAFFDYQVPSAVIA 614 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPE-VPEGIV 702 L Q GRLIRS G V + D R+L K YG+ +++LP + V E Sbjct: 615 LKQGFGRLIRSLHDRGVVCLLDNRILKKQYGRVFVESLPKYWRTTDIRKVEEFFA 669 >UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEF3_9ENTR Length = 690 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 205/686 (29%), Positives = 304/686 (44%), Gaps = 37/686 (5%) Query: 23 PDFIPRAPQRQMI----ADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 PRA Q M+ V T + E+ R IEA TG GKTL Y +P I +A E+ KT Sbjct: 25 KGLSPRAGQVDMMAFCSEVVNATPSEEQYRVGVIEAGTGTGKTLGYCLPLIPLAMEKHKT 84 Query: 79 LVVSTANVALQDQIYSKDLPLLK-KIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 L++STA VALQ+QI SKDLP ++ + + A GR RY C +E Sbjct: 85 LIISTATVALQEQIISKDLPEIQARAGLSFSYAMAKGRSRYFCQMRCDVHMESEMNAYGY 144 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 + + + W G RD I + +W R++ + C + Sbjct: 145 I--------------RDDVEDISKAFAGGHWTGERDSYPDEISEAVWGRVNAIGSQCPKK 190 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP--KNLLLVLDEGHHLPD 255 C +Y CPFF+AR + +VV+ANH +V++ + + P + + V DEGHH+P Sbjct: 191 RCPHYHRCPFFLARALLDSVDVVIANHDIVLSDLSLGGGIILPPQEESIYVFDEGHHVPQ 250 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA-IPERLNAHCEELYEL 314 A + SA + A R + +V T E + + + E EL +L Sbjct: 251 KAINHFATSASLDAS--RHFMAEIFDMVMTMPESYGGTMEQHVQQLVEFAGHAGNELGDL 308 Query: 315 IASLNNILN-----LYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 +L LN + +RF G +P+ + + K ++ + Sbjct: 309 RGTLLRSLNWRSDHDMPNGVESDIYRFPEGFVPEAIAALFSPALKTVNEMQNIVVKMTAI 368 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSK-LWRLASLAQSSGAPVTKWATREEREGQ 428 + E L + + + L SG P+ +W + Sbjct: 369 VDEAGRDISEDDLALQKMAVGELANRLAGMHQALASYCGNKTVSGMPMARWINVRRTKRS 428 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL 488 + +C + + L+ LW IVTSAT+RSL+ F E +GL + Sbjct: 429 TEVVINCSPVYAGEHLKSELWSKAYATIVTSATIRSLSKFDAFLEQAGLPVDTP--TLLA 486 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SPF++ G + IPRMR P+ N E+H AE+ K V + G LVLFAS R M+ Sbjct: 487 RSPFDYQNNGVLFIPRMRSVPT--NHEEHTAEIIELLPKLVLRLQ--GCLVLFASRRQME 542 Query: 549 RFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 + + +LL+QG P+ ++ H+ R+ GE S++ G+ SF+EG+DL G + Sbjct: 543 EVSKAMPQHISPLLLIQGALPKREILLRHKLRIDRGEPSIIFGMASFSEGVDLPGVYCNN 602 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 V I K+ F PV T EWL+ R F S+P A L Q VGRLIR+ G V Sbjct: 603 VIIAKLPFSVPTDPVGQTLTEWLEKNGRDAFREISIPEACLKLTQSVGRLIRTESDTGAV 662 Query: 668 VIYDKRLLTKNYGKRLLDALPVFPIE 693 I DKRL TK YGK +L +LP F E Sbjct: 663 TILDKRLKTKAYGKDILASLPPFRRE 688 >UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS96_9GAMM Length = 668 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 213/675 (31%), Positives = 328/675 (48%), Gaps = 24/675 (3%) Query: 34 MIADVAKTLAGEE--GRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQ 91 MIA VA L+ + R +EA TG GKT+ YLI + IAR +KT+VV+T +ALQ+Q Sbjct: 1 MIATVANALSDNDPDKRLAVVEAGTGTGKTVGYLIAALPIARALKKTVVVATGTIALQEQ 60 Query: 92 IYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD-LLAFLDDELTPNN 149 + KDLP L + D GRGRY C + ++ L F D+ N Sbjct: 61 LIHKDLPELLEACGWDHSCALVKGRGRYACNLKMEQCLDAIKSKDAGLFLFEDEVAFNPN 120 Query: 150 QEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFV 209 + + ++ L WDG RD + I D WR L+ D+ C R C + +C FF Sbjct: 121 VQTEDLYREMSDALAEGTWDGDRDSWESRIQDVEWRALTIDRRQCSGRRCRFVNQCAFFN 180 Query: 210 ARREIQEAEVVVANHALVMAAME--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI 267 AR E++E+E +VANH LVMA + A+LP P++ + + DEGH + D A + Sbjct: 181 ARNELEESECIVANHDLVMADLALGGGAILPPPEDCIYIFDEGHRIGDTAIRHFGAECRV 240 Query: 268 TAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMP 327 L+ K + F T +P RL ++ EL+ IL + Sbjct: 241 NNSI--TWLERLQKQCKGQVPVFEKDTALAEQLP-RLEKGATKIIELLNVAYPILQQALE 297 Query: 328 AG---QEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD----IV 380 + ++ +R+A G++ + + +I +LAK T G E+ ++ L++ G Sbjct: 298 SADYPEDGRYRYANGDIGEGLRDIASQLAKQTSAWLGRLEVLVDTLNDALGDKQYPIPAP 357 Query: 381 RLHRLILQMNRALGMFEAQSKLW-RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + Q E LW RL ++ P+ W ++ + + + I+ Sbjct: 358 DVELFYQQAGSWQSRAEQLLALWDRLQREIKTGDMPLACWLRLDDSGNNVDISVNASPIQ 417 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 ++ L +LW S +VTSATLR+L SF LQ +G+ + F+ + F++ + Sbjct: 418 AAELLRDVLWGSCYASVVTSATLRALGSFQTLQRETGIPDF--AHFMTVAGAFDYQQAAV 475 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLR 558 I +P VE + + H + F + + H G LVLF+S R M++ D ++ +L+ Sbjct: 476 IRVPADAVEGN--QTDAHTRYIIDHFAE--YEEPHCGTLVLFSSRRQMEQVYDDLSSELQ 531 Query: 559 LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPI 618 +L+QG +V LH++R+ G SVL+GL SFAEG+DL GD V I K+ F Sbjct: 532 KNILIQGQLSNREMVRLHKERIDQGRTSVLMGLASFAEGVDLPGDYCRHVVIAKLPFAVP 591 Query: 619 DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 D P+ EW+++ F SLP AS L+Q GRL+R+ G V I DKRL+TK Sbjct: 592 DDPLHEALSEWIEAGGGNSFFDISLPIASLRLVQACGRLLRTEKDTGTVTILDKRLITKR 651 Query: 679 YGKRLLDALPVFPIE 693 YG +LL+ LP F E Sbjct: 652 YGTQLLNGLPPFRRE 666 >UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1Z3_9DELT Length = 707 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 175/742 (23%), Positives = 293/742 (39%), Gaps = 80/742 (10%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE---------------GRHLAI 52 +I A L ++P F PR Q M VA TL G E GR + Sbjct: 1 MEEIFAAGGLLSRELPGFEPREGQLAMARAVAATLNGNEPSPGGAPEQPAAAHGGRLVLA 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTA 111 EA TG GKTL+YL+P + + +V+ST + LQ+QI +K++P +++ + P LK Sbjct: 61 EAGTGTGKTLAYLVPAVL----SGRKVVISTNTINLQEQILAKEIPFIRRHLAPGLKALC 116 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 GR Y+C L P + + D+ +++ + L+ Sbjct: 117 VKGRQNYLCLYRWHQL-QINPQGRLFSKGVSDQ-------DEQNLETIAAWLNETGTGDR 168 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 + +A D LW +S CL +C + +C R+ +++++ NH L + + Sbjct: 169 GELRGLADDSPLWAGISAAAGHCLGSSCPHGADCFITRLRQRAARSQLLIVNHHLFFSDL 228 Query: 232 ESEAVL---PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME 288 P+ ++ DE HHL ++A ++ + +DL L Sbjct: 229 AVRRFGHAEVLPRYEAVIFDEAHHLENIATRHFGLALS-----HYQIIDLVRDLEGMAEA 283 Query: 289 QFRPKTIPPL-AIPERLNAHCEELYEL---------IASLNNILNLYMPAGQEAEHRFAM 338 + R + + L A + + L + E FA Sbjct: 284 RLRERDRAGVVQAVRALAAEASLFLDFFPARRGRFPLRELIAAEPRWPELCSTLETAFAA 343 Query: 339 -----------GELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLIL 387 E+ VL CQ L + + +L + + G HD + Sbjct: 344 VIRPLEKLAGCEEIWGPVLRRCQDLLATFKTITSPPQLAVPSVGAAPGGHDAMPQPPRDA 403 Query: 388 QMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERL 447 G+ R + A + W R E+ + I V+ L+ Sbjct: 404 D-----GLATTAETPGRPSPPAPVAADSAIYWYERREK----TVQLAVSPIDVAGHLQEH 454 Query: 448 LWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR-MR 506 L+R + + TSATLR+ N F ++ GL + L +PF++ + + +P Sbjct: 455 LYRQVKAAVFTSATLRTGNDFRYVKARLGLPADCP--ALDLATPFDYAGRTLLYVPDQDF 512 Query: 507 VEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS-GRAMQRFLDYVTDLRLMLLVQG 565 P+ E A +++ L+LF S Q + + +LVQG Sbjct: 513 PAPN----EAAYPARARQLMREIIGHSRGRALLLFTSVNAMHQAAAELAGKVPYPVLVQG 568 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 + PR L+E R R RSVL+ + SF EG+D+ G+ LS V I K+ F PV++ Sbjct: 569 EAPRSALLEEFRSR----TRSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMA 624 Query: 626 EGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLD 685 + +++ PF +P A L Q VGRL+RS+ G + I D RL +K YG+ L Sbjct: 625 RVDKIRAEGGNPFFDFQVPRAVLTLRQGVGRLLRSNADQGVLAILDVRLFSKGYGRTFLK 684 Query: 686 ALPVFPIEQ--PEVPEGIVKKK 705 +LP P+ + V + ++K Sbjct: 685 SLPPSPLSRELAAVKKFFSREK 706 >UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9XI74_9BACT Length = 719 Score = 470 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 187/741 (25%), Positives = 287/741 (38%), Gaps = 98/741 (13%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 I + L +F R Q++M VAK L ++ HL +EA TGVGK+L+YLIP Sbjct: 20 VESIFSPTGILSRA-SNFEYRPQQQRMAVAVAKALENKD--HLVVEAGTGVGKSLAYLIP 76 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 I A K V+ST + LQ+Q+ KDLP+L++++P +T GRG Y+C R L Sbjct: 77 SILYAIASSKKAVISTHTINLQEQLTQKDLPMLEQVLPIKFSYTMLKGRGNYLCSRRLFK 136 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + T +EE KR + DG +I D +W Sbjct: 137 AMQQSNS----------LFTSPEEEELKRIH----EWSKTTKDGSLSDFEIEPDPKVWSH 182 Query: 187 LSTDKASCLNRNCYY-------YRECPFFVARREIQEAEVVVANHALVMA----AMESEA 235 + +++ C + C + C F AR+ I A+V+V NH L E Sbjct: 183 VCSERGLCSPKMCGHQSEFGQQNGVCFFQRARQRILSADVLVVNHTLFFTLLGGIEEENE 242 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 KN +V DE H + VA + +S Y LQ + + R Sbjct: 243 GGVLFKNDFVVFDEAHQMESVASKHIGLSVSSGQMRYALQRLWNPRTEKGILATLRQG-- 300 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH-----RFAMGELPDEVLEICQ 350 + + L + + + + L E + A EL E+ Q Sbjct: 301 KTVTLVADLLREADHFFGEVETACEELRKAQSDQNAGESNAARAKRAWTELRIRKPELVQ 360 Query: 351 RLAKL-TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 L + LR + +K ++V +R + + + MF Sbjct: 361 DNVTLPIQRLREAVSELIKMTEDKDTGQELVECNRRLADLREEVAMF------------L 408 Query: 410 QSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS-- 467 S W R + Q + + + V++ L R L+ II+TSATL Sbjct: 409 NQSEEDYVYWVERSGKT-QKNFALNAAPVDVAEFLRRRLFGCDTSIIMTSATLSVSEKDL 467 Query: 468 ------------------------------FSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + G +E + + +PF++ EQ Sbjct: 468 ESAKAKAAAAEKKSEPERPARFQKRNEFPGLNYFVRRVGAQEATL---LQVGTPFHYEEQ 524 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-- 555 K+ + +P + F K H VLF S MQ D + Sbjct: 525 MKLFVVNKMPDPRDQGYRDALIHWIEHFIKM----THGKAFVLFTSYSLMQDVADRMQPF 580 Query: 556 --DLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 L+L + VQG PR ++E ++ V SVL G SF +G+D+ G+ LS V I + Sbjct: 581 FDKLKLEVYVQGTGTPRSVMLEKFKENVD----SVLFGTDSFWQGVDVPGEALSNVIITR 636 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + F D P++ E +++ PF SLP A Q VGRLIR+ G VV+ D Sbjct: 637 LPFAVPDHPLIEARIENIEAHGGNPFSEFSLPEAILKFRQGVGRLIRTKTDKGIVVVLDN 696 Query: 673 RLLTKNYGKRLLDALPVFPIE 693 R+L K YG+ LDA+P P+E Sbjct: 697 RVLVKRYGQAFLDAMPKCPVE 717 >UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID=A6GN94_9BURK Length = 654 Score = 470 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 180/695 (25%), Positives = 273/695 (39%), Gaps = 75/695 (10%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + A AL ++P F R Q +M V + E L +EA TG GKT +Y++P + Sbjct: 10 EAFAPGGALARRLPGFSARESQIEMAQAVGNAI--ETQSALVVEAGTGTGKTFAYVVPAL 67 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 + +++STA LQDQ+++KDLPL+++ + + GR YVC +L Sbjct: 68 L----SGRRVLLSTATKTLQDQLFNKDLPLVREALGVPVNVALLKGRQNYVCHFHLERAL 123 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + E K+K + D + D +W ++ Sbjct: 124 KEAR--------------LPSPREVDHLQKVKIFAGRTQSGDRADCAGVPEDSAVWSWVT 169 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLLL 245 ++K +CL C EC ARR+ +AEVVV NH L +A + + P ++ Sbjct: 170 SNKDNCLGGECPNASECFVNKARRDALDAEVVVVNHHLFLADLALKEEGIAELLPACDVI 229 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 V DE H LPD+A L + A C E R I Sbjct: 230 VFDEAHQLPDIATSLLGQAIST----------------AQCQEFLRDVLIEGRTSSADAG 273 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 L + +L I + A A + + A L GL E+ Sbjct: 274 DWDSVLRPMELALKEIRRIVGTEIDSARFTHAQ---FLALNGVAAVCADFENRLEGLIEM 330 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 VR + M RA + + A+ + +W + Sbjct: 331 ISPL---------SVRNESWVKLMGRASELCLRWQDWFSPATA--QADEQSVRWVSVSTH 379 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 + F + VS+ +L + TSATL S GL E Sbjct: 380 ----VVQFCDSPLDVSNAFAKLYAEQPKAWVFTSATLSIKESLQHFTLQVGLDECQQ--- 432 Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 + L SPF++ Q + +P P NE Q ++ + G+ L S R Sbjct: 433 LLLPSPFDYESQALLCVPDNLPFP---NEPQFSKKLCDAVWPLLH-ASEGGVFFLCTSHR 488 Query: 546 AMQRFLDYVTD------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 A+++ +Y+ + L LLVQG+ R L++ R VLVG SF EG+D Sbjct: 489 AVKQVGEYLRERIEKDELDWSLLVQGEASRAELLDQFR----VLNNPVLVGAASFWEGVD 544 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 ++GD L V I K+ F P D PV + E +K+ F+ SLP A+ L Q GRLIR Sbjct: 545 IRGDGLRLVIIDKLPFAPPDDPVFQAKSELIKNRGGNAFQDLSLPDAAIALKQGAGRLIR 604 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 WG ++I D+RL+ K YGK L +LP F + Sbjct: 605 DETDWGVLLIGDRRLVEKGYGKLLWRSLPPFKRTR 639 >UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY63_METI4 Length = 673 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 174/706 (24%), Positives = 282/706 (39%), Gaps = 75/706 (10%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 A + L + + R Q +M ++ +L +E HL IEAPTG GK+L+YL+P Sbjct: 26 VAAFFSPSGPLAQA-AHYEYRPQQEKMAEEIYSSLEKKE--HLIIEAPTGTGKSLAYLVP 82 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTA 126 + ++ + V+ST + LQDQ+ KD+PLLKK D GR Y CP+ L Sbjct: 83 SLLYCKQFSQRGVISTHTLNLQDQLLHKDIPLLKKTFFQDFSAVLLKGRQNYFCPKRLEK 142 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + F E+ + GD++ D LW + Sbjct: 143 VMKHASD-----LFSHFEINDLMRIYDWSVRTTTGDVEE---------LDPLPSASLWSQ 188 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM-------AAMESEAVLPD 239 + ++ C +R+C + C + R + ++++ + NHA + Sbjct: 189 ICSEPGLCNSRSCSHNPRCFYQKFREKSAQSDLTIVNHAFYFSLLGQSVDPEFQKETGLP 248 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 ++ DE H L VA L S +L+ F P T L Sbjct: 249 FGESFVIFDEAHTLEKVASIQLGFSVSK------------YRLLNNLARLFNPSTRKGLL 296 Query: 300 I---PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 + +L E YE SL L + +E R +L L Sbjct: 297 LCLKESKLLTKNIEAYEQAQSLFQALGRMLVQNSLSEQR---------ILAPLSLPHPLP 347 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 + L L + + L + + +++ + L + Sbjct: 348 DTLERLVKEISSVLINLEDKEIKEEIENCLEKIS---------LERRALLEFVEMKIPEH 398 Query: 417 TKWATR-EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 W + + ++ + V L+ LL+ +I+TSATL+ + FS Q+ Sbjct: 399 VYWVELSDPSNPEGNVQLLAAPLEVGPLLQTLLYEKEISVIMTSATLQVASHFSYFQDRV 458 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 GL R L SPF++ Q KI+IP+ +PS E A++ +++ Sbjct: 459 GL----YSRTFQLQSPFDYGRQMKIIIPKNMPDPSQS---PQYEEALAYWIERLVRYTKG 511 Query: 536 GMLVLFASGR----AMQRFLDYVTDLRLMLLVQ-GDQPRYRLVELHRKRVANGERSVLVG 590 LVLF + + + +T L VQ G PR++L+ L ++ + +VL G Sbjct: 512 SALVLFTNRKTLLTMTEALGQKLTALNFPFFVQDGKTPRHKLLNLFKEA----QHAVLFG 567 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 + SF +G+D+ G+ L V I K+ F D P V + E L+ + F SLP A Sbjct: 568 MDSFWQGIDVPGESLRNVIITKLPFSAPDHPQVQAKCEKLEQQGKNAFTHYSLPEAVLKF 627 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPE 696 Q VGRLIRS G + I D R+L+K+YGK L+++P PIE E Sbjct: 628 RQGVGRLIRSKEDKGIIAILDSRILSKSYGKVFLNSIPPAPIEIME 673 >UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMS2_9GAMM Length = 707 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 209/716 (29%), Positives = 342/716 (47%), Gaps = 37/716 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRH----------LAI 52 L ++ I Y + + R Q+ MIA+VA+TL H Sbjct: 2 LDKQIQKTIQQAYSSFLDN-RGLKARYGQKMMIAEVARTLGSINSNHEGVREGGNHICVT 60 Query: 53 EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL-KKIIPDLKFTA 111 EA TG GKT++YL+ + IA+ K +VVSTA VALQ+Q+ KDLP L + +L + Sbjct: 61 EAGTGTGKTMAYLLASVPIAQARNKKVVVSTATVALQEQLILKDLPQLVTEAGINLTYGL 120 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 A GRGRY C N + + + + D+ +QE L + +WDG Sbjct: 121 AKGRGRYFCISNAEKVLEQQNELGQIALYEDEVAQKLDQEVILEVKGLLSQYASGEWDGD 180 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 RD + D +W+ ++D C NR C + CPFF+AR+++ + +++VANH LV+A + Sbjct: 181 RDSLVDTVPDPIWQLSTSDHVRCTNRRCSNFSSCPFFLARQQLDKWDLIVANHDLVLADL 240 Query: 232 E--SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCM 287 A+L P++ + + DEGHHL S I + W KL+ Sbjct: 241 SLGGGAILSPPEDTIYIFDEGHHLSTKTTGHFAYSLRIKSSIRWLSTVTRTLNKLLNEAS 300 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPA---GQEAEHRFAMGELPDE 344 E + ++ ++L ++ + + +LN+ + G +RFA G +P+ Sbjct: 301 EH-----VVLISYIDKLATPFSDMERSLQEMQTLLNMLLEDKLSGPSDRYRFAQGIIPES 355 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH--DIVRL--HRLILQMNRALGMFEAQS 400 + LA+ E + E ++ L E D+ R + Q+ ++ Sbjct: 356 LQLSALNLAQAAERVVLKFEQIVDLLKEGMDGELADLPREMGEKWFPQIGAFHSRVQSIY 415 Query: 401 KLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 L R S + +GA P +W + + + L H + +D LE LW +VTS Sbjct: 416 GLARSYSASDQTGALPTARWIQKVDGNEGIDLACHSSPVSAADNLEEHLWSQCYGAVVTS 475 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 ATL +L F RL G+ + +SPF+ ++ +P M+ +P N + H Sbjct: 476 ATLTALGRFDRLYTDLGIPSDSP--CAVFNSPFDFQNAAQLRVPAMKTDPG--NPDLHNQ 531 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLM--LLVQGDQPRYRLVELHR 577 E++ + + + ++ LVLF+S R M+ LD + + +LVQGD ++ ++ HR Sbjct: 532 EISDYLIQLLPTET--SALVLFSSWRQMRYVLDAMPATIVADSILVQGDLAKHEILRQHR 589 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +++ + S++ GL SFAEG+DL G L+ V I K+ F D PV T EW++S R P Sbjct: 590 EKIDQQKASIIFGLASFAEGVDLPGKYLTHVIITKLPFGVPDDPVDATYSEWIESQGRNP 649 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 FE +P AS L Q GRL+R+ G++ + D+R +T+ YGK+LL ALP + + Sbjct: 650 FEEWVIPMASMRLTQATGRLLRTEEDKGDITLLDRRFITRRYGKQLLAALPPYRRK 705 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 159/705 (22%), Positives = 279/705 (39%), Gaps = 48/705 (6%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R Q +M+ V + + EE H+A+EA TG+GK+L+YL+P A EQK +++ST Sbjct: 254 GMEARPAQFEMMDHVREAFSVEE--HVALEAGTGIGKSLAYLVPAAFQAISEQKPVLIST 311 Query: 84 ANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 VAL+ Q+ +K++ L++++ ++ GR Y+ Q D Sbjct: 312 YTVALEHQLLNKEIKRLEQMLKTPVRTVLLKGRSHYLHLFKFEQSLKEPDRQYDA----- 366 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYY 202 + Q GDLD G W+R+ D ++ + Sbjct: 367 --VFAKMQILVWLTETESGDLDELHLSG--------GGKHFWQRIKQDGWHTDKKD-PWK 415 Query: 203 RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALE 262 + A+ A++ V NHA++ A +E + + D +++DE H L AR+ + Sbjct: 416 SRDFYLYAKACAASADIAVTNHAMLCAELERDQSVFD-GFQYVIIDEAHRLEQAARETIG 474 Query: 263 MSAEITAPWYRLQL----------DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 A Y + K++ + AI + L+A ++L+ Sbjct: 475 KRASYNQMKYMMARLGLYEQKQLFYKLEKVMEKYGLKASLHAFECDAILQALDAELDDLF 534 Query: 313 ELIAS----LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR-LAKLTEMLRGLAELFL 367 ++A N N Y + + VL +R A + E+ + L E Sbjct: 535 GMLAQKVLRANRETNGYQKIKLRIKKENWKQKAWQAVLLCTERIRASMKEISQALEERLS 594 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 LSEK + I +M L + + + Q+ G W + R Sbjct: 595 QLLSEKQMKEQALAF---IEEMYSFLEDWRLLRDNLAIFA-GQNGGDENVVWVEGDLRAL 650 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 L +C + + L++ + +++TSATL SF + +GL + V Sbjct: 651 PNSLVIYCQPVHAGEILQKAFFSRKKSVVLTSATLTVGGSFRYFLDETGL--AHTTKTVR 708 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 + SPF Q + +IP + + E +MA + V M++LF S + Sbjct: 709 IPSPFRFDRQVQFIIPNDLPDIGSVSIEDFAEKMAGYLL-AVAEATKGRMMILFTSFDLL 767 Query: 548 QRFLDYVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 + + + M + QG R K +++L GL SF EG+D+ GD Sbjct: 768 KNVYHLMKESGMLEDYMFIAQGISSGSR--SRLTKSFQKFGKAILFGLSSFWEGVDIPGD 825 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS + + ++ F P D PV + ++ ++ + PF +LP A Q GRLIR+ Sbjct: 826 DLSCLVMARLPFLPPDEPVTEAKSDYFRAKGKNPFSAYALPEAVLRFKQGFGRLIRTRHD 885 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 G ++ D+R+ T YG +LP I + E + + Sbjct: 886 RGIFLVLDRRIETATYGPAFTKSLPPVRIRHLNLNETLEVIESWL 930 >UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax=Parachlamydiaceae RepID=Q6MEU9_PARUW Length = 753 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 163/758 (21%), Positives = 289/758 (38%), Gaps = 76/758 (10%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L + + L + F R Q+QM+ ++ + + IEA TG+GK+L Sbjct: 11 LQSEKILSLLKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNND--SIALIEAGTGIGKSL 68 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCP 121 +YLIP + A + V+ST + LQ+Q+ SKD+P L + K G Y+C Sbjct: 69 AYLIPALIWAARFNERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCI 128 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L + E++ + EE + K++ DG R A Sbjct: 129 RKLEDV--------------QMEMSIVSSEEAQEIEKIEAWRQQ-TVDGSRSSLSFAPTH 173 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV----- 236 +W ++ + +C + C +Y++C FF ARR+ Q+A +++ NH L+ A + A Sbjct: 174 SVWEKVGAENEACSHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYS 233 Query: 237 --LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL------DLFTKLVATCME 288 P ++LDE HH+ D+A + + + E Sbjct: 234 ETSILPTYRRIILDEAHHVEDIATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKE 293 Query: 289 QF---------RPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG 339 + R + + + L A ++E I + ++ A + R Sbjct: 294 KLQLLYNKTPPREISQIVMRLTIDLPALRHVIHEQINQTFDAFAHFIEAIKNPASRLLGE 353 Query: 340 E---------LPDEVLEICQRLAKLTEMLRGLAELFLN------DLSEKTGSHDIVRLHR 384 E + +E + + ++ L + N +L + + RL Sbjct: 354 EVSLNEQKLRILNEHMNHTKWKEEIHPSASQLIDSLKNYRLNITNLEAELKLIENERLQE 413 Query: 385 LIL----QMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRV 440 + E L + S +W + + +++ + + Sbjct: 414 QTKSIRLDIQGLANRLETSISLLNHF-ILPPSSPNKVRWIEAHKLKSLINVHLVDADLDI 472 Query: 441 SDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA----GDRFVALDSPFNHCE 496 S L ++ P +I+ SATL S F +++ GL +K DSPF++ + Sbjct: 473 SKSLAEFVFSKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHK 532 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT- 555 Q + +P PS + E + VLF S +Q+ + ++ Sbjct: 533 QALLAVPTDMPPPSHPDFNWIAFENIWKAIQ----ASRGQAFVLFTSYSMLQQCAEKLSA 588 Query: 556 ---DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 + +L QG++ R L+ + +R++L G SF EG+D+ GD L V I K Sbjct: 589 RMHEHAYVLFKQGEEARQTLLHKFK----TTDRAILFGTDSFWEGVDVAGDALRCVIIVK 644 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + F P++ E + PF S+P A Q GRLIR+ G +V D Sbjct: 645 LPFRVPTEPLIQARTEAIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDT 704 Query: 673 RLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 RL+TK YGK+ L++LP + K + + Sbjct: 705 RLVTKGYGKQFLNSLPACEKVFINSEQLWAKMGDFYRK 742 >UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJC5_9DELT Length = 698 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 181/728 (24%), Positives = 282/728 (38%), Gaps = 84/728 (11%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGR------------- 48 + AA +I A L +PD+ PR Q M VA TL E Sbjct: 27 SALAARMGEIFAVGGLLARYLPDYEPREGQLSMAQAVAATLDPETAEELPPPETSGPERA 86 Query: 49 -----HLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKI 103 L +EA TG GKTL+YL+P + + +VVST + LQ+QI +K++P +++ Sbjct: 87 PHPTPRLLVEAGTGTGKTLAYLVPAVL----SGRRVVVSTNTINLQEQILAKEIPFIQRY 142 Query: 104 IPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGD 162 + L+ GRG Y+C R A + + +L G Sbjct: 143 LAPWLQAMCVKGRGNYLCLRRWHQFL----------AKHRQGQLFTGNQGGAQLEQLAGW 192 Query: 163 LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVA 222 ++ + +++A D LW L+ CL +C + EC RR+ A +++ Sbjct: 193 VEETDSGDKAELSELADDSPLWASLNAAGGHCLGSSCPHGAECFITTLRRKAARAHLLIV 252 Query: 223 NHALVMAAMESEAVL---PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLF 279 NH L + + P+ +V DE HHL ++A +S + LDL Sbjct: 253 NHHLFFSDLAVRRFGHAEVLPRYEAVVFDEAHHLENIATRHFGLSLS-----HYQLLDLV 307 Query: 280 TKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG 339 L + E+ R RL H L LN+ + RF + Sbjct: 308 RDLESMAEERLRENDRA------RLLQHARALGVEADRLNHFFPA-------SRGRFPLP 354 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 L E + L L R LA + +R R E Sbjct: 355 PLLAEHPDWPGLLEDLRGDFRALAGDLEGLAQLAEIWNPPLRRVR------------ELA 402 Query: 400 SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 L + + W R E+ ++ I ++ L L + + TS Sbjct: 403 DTLEAICQPPEDDAGNDIYWYERLEK----TVFIGRSPIDIAPHLREHLHNQVKATVFTS 458 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRM-RVEPSIDNEEQHI 518 ATLR+ F ++ GL + + +AL++PF++ + + +P P + Sbjct: 459 ATLRTGKDFRYVKNRLGLPADSPE--LALETPFDYAGRTLLYVPSQEMPPPGASGHPEAS 516 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASG-RAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHR 577 + + L+LF S Q + L LL+QGD PR L+E R Sbjct: 517 RRLMRELVQC----SRGRALLLFTSLGAMRQAAAELAGTLPYPLLIQGDAPRQLLLEQFR 572 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +R SVL+ + SF EG+D+ G+ LS V I K+ F PV++ E +K P Sbjct: 573 RR----TGSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMARVEKIKKDGGNP 628 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ--P 695 F +P A L Q VGRL+RS G + I D RL +K+YG+ L +LP P+ + Sbjct: 629 FFDFQVPRAVLMLRQGVGRLLRSTADRGVLAILDGRLFSKSYGRIFLQSLPPSPVCRELA 688 Query: 696 EVPEGIVK 703 V E Sbjct: 689 RVREFFAD 696 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 160/689 (23%), Positives = 268/689 (38%), Gaps = 64/689 (9%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F R Q+QM+ DV L + +H IEA TGVGKT++YL+P + A ++Q+ +VVST Sbjct: 251 FEYREGQKQMMDDVNYAL--QTCQHALIEAGTGVGKTMAYLLPTVFYAVKQQQPIVVSTY 308 Query: 85 NVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 + LQ Q+ K+LP + +++P G+ Y+ R T D+ Sbjct: 309 TLQLQKQMIEKELPRVAQLVPFPFTTAVLKGKRNYMSVRKFARTLKHIDTNYDIA----- 363 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 Q GD+D A W + +D + Sbjct: 364 --LTKCQLLVWLTETETGDVDELNLT--------AGGALFWEDVHSDDTNE--------E 405 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEM 263 F A+ + + A V++ NH+ VM + ++ P L++DE HHL DVA Sbjct: 406 YDFFVRAKEKAKHAHVIITNHSFVMHDLTADEKWLPPYEQ-LIIDEAHHLEDVAAHFFGR 464 Query: 264 SAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILN 323 Y L+T++ M L E EL +L SL + + Sbjct: 465 HVS-----YEYIRLLWTRMNDIAMIHKMGALRSLLGDLE------YELNQLFQSLRHYVL 513 Query: 324 LYMPAGQEAEHRF-AMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRL 382 +RF E E + L ++ ++ L+++ + E Sbjct: 514 RRQKGDGRIRYRFVPWKEYGKEWSGTIELLMRIMNDVQQLSQMINDIPKEDVKPFTT--- 570 Query: 383 HRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSD 442 L L L S + +W + + + + ++ Sbjct: 571 ---------------FIDTLRTLQHLLTSDDDDIVRWLEVDAKAAVNAVTVISQPLDLAH 615 Query: 443 QLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI 502 L+ +I+TSATL + FS + GL + + SPF++ +Q +++ Sbjct: 616 FFADQLFSRKRSVILTSATLTTNGRFSFIIARLGLDDF-YPFTRIIPSPFSYEKQAALMV 674 Query: 503 PRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY---VTDLRL 559 P EQ+ A + + MLVLF S +++ Y D + Sbjct: 675 PTDLPTFPSVTVEQYAEHAAQQVIR-IARHTKGRMLVLFTSYELLKQTYAYAKQFNDDQF 733 Query: 560 MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPID 619 +LL QG + E+++L G SF EG+DL G ++ V I ++ F P D Sbjct: 734 VLLAQGVSGGNAA--KLTRHFQQFEQAILFGTSSFWEGIDLPGSEVTCVVIVRLPFAPPD 791 Query: 620 SPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 PV+ + +++++ PF SLP A Q GRLIR+ G + ++D+RLLT +Y Sbjct: 792 DPVMEAKSDYIRAKGGNPFYDLSLPQAILRFKQGFGRLIRTKEDRGIIFVFDQRLLTASY 851 Query: 680 GKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 K L +LP + + E + E Sbjct: 852 SKYFLQSLPPIRVYHAPLSELLQHVNEWL 880 >UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJJ6_POLNA Length = 750 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 212/717 (29%), Positives = 311/717 (43%), Gaps = 38/717 (5%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG--------EEGRHLA-IEAP 55 A + ++ Y + P FI R Q QM+ T G HLA +EA Sbjct: 41 EAARIRLELLYGEVAADWPGFIARPGQYQMMQACLLTFLSAKAPEDEVRTGSHLAQLEAG 100 Query: 56 TGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGR 115 TG GKT++Y + I + +KT++VSTA VALQ+Q++ KDLP L +IIPDL++ GR Sbjct: 101 TGTGKTVAYCLAAIVASEVLKKTVIVSTATVALQEQLFQKDLPRLAEIIPDLRYDILKGR 160 Query: 116 GRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQ-----------KRCAKLKGDLD 164 RYVC L + + L L + + + + + L+ Sbjct: 161 ARYVCESRLEGVINDVAQDGLLTGELFQDSFGDARRQAAGIVRDRTQAMRWFKSSAKKLN 220 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + WDG D D WR++ + +C C ++R C FF ARR+ A + VANH Sbjct: 221 SGTWDGDIDSLAQPPDPQDWRQVQANAHACNGGQCEHFRNCAFFKARRQAASATLQVANH 280 Query: 225 ALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 ALV+A +++++ L D N L V DE HHLP +A + A + L T L Sbjct: 281 ALVLATLQTDSSLIDAGNTLFVFDEAHHLPGIAAEQFSYRARLGTSS-----KLLTSLRT 335 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNL-YMPAGQEAEHRFAMGELPD 343 + + P + +A L + + + HRFA G +P+ Sbjct: 336 VALRHGKALPASTRPDPVAFAQLVTGCTDKLAMLERYWQDAQLVSADQPVHRFAQGRIPE 395 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLIL---QMNRALGMFEAQS 400 ++ CQ LA L + + L E S + ++ L Sbjct: 396 ALVLECQELATLIRAIASVVSSIAAALKEPDESKSPTQREEQTHAGVELGVYLSRLGTLD 455 Query: 401 KLWRLASLAQSSGAPVTKWATR--EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 KL L++ A P KW + W + + L + LW + + T Sbjct: 456 KL--LSAWATHDRVPWAKWIEWAEDGAGSAPDAWLCASPMTAAQVLSKNLWNKVSAAVCT 513 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 SATL + SF +SG+ R + +DSPF++ QG++ I M P Sbjct: 514 SATLTACGSFDFFDRLSGMNRFPERRSLVVDSPFDYATQGELRIAPMTHSPKSPGFSD-- 571 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHR 577 E+ + H LVLF S R MQ + DL +LVQG + R L+ H Sbjct: 572 -ELCDKLPGLLREHPHGQ-LVLFTSRRQMQACHAALPQDLLDQVLVQGVRSRTELLREHG 629 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +RV GERS++ GLQSF EG+DL G L V I K+ F P SPV EWL R P Sbjct: 630 RRVKAGERSIIFGLQSFGEGIDLPGRLCEHVVIDKLPFTPPSSPVEEALAEWLSGQGRDP 689 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 F S+P A L Q GR +R+ + + D RL+T YG+ +L LP FP+ + Sbjct: 690 FAELSVPRAGMKLAQWAGRGVRTVTDRAVITVCDTRLVTMRYGQAILAGLPAFPLVR 746 >UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB18_KANKD Length = 653 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 171/721 (23%), Positives = 280/721 (38%), Gaps = 84/721 (11%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 MA A+L ++ + L + F+ R+ Q QM + + +E + IEA TG GK Sbjct: 1 MATLASL-EELFSADGLLADYFEGFVRRSEQEQMAQSIESAI--KEEASICIEAGTGTGK 57 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 T +YL+P + E+ ++VST LQDQ+Y +DLP + K + K GR Y+ Sbjct: 58 TFAYLVPALKSWYEQDSKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYL 117 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L + Q + + ++ + GDL D+A Sbjct: 118 CQYRLQQSLESGRFQSRSM------VDTLSRVNEWSVKTTSGDLTQCT--------DLAD 163 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL-- 237 +D LW +++ +CL C Y EC AR+ A+VVV NH L++A M + Sbjct: 164 NDPLWSYVTSTNENCLGAECPDYAECFVAKARQRAVTADVVVVNHHLLLADMVLKEDGFG 223 Query: 238 -PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P ++V+DEGH L D+A ME R + Sbjct: 224 ELLPDADIVVVDEGHQLADIAHSFYGRRLTSRQ----------------LMEICRDTELE 267 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L + + + ++N I +GQ+ + + ++L A+L Sbjct: 268 ALTNAKDDRQLSVAVRRVEGAVNEIRLSLGESGQKKNWQQIVNPQRKQLL------AELK 321 Query: 357 EMLRGLAELFLNDLSEKTG-SHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 + L L S G R + + + + Sbjct: 322 KELGALHSRLERHASRSKGLDSCHKRAEECLHTLAFFSDKDQELT--------------- 366 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSI-PHIIVTSATLR-----SLNSFS 469 +W + + VS + + TSAT+ + F Sbjct: 367 AVRWVETYRQG----FAMMETPLDVSKAFAQSCREQSTRSWVFTSATITQASSKGTSDFK 422 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 +E GL E R + L SPF++ Q + IPR +P + + + + Sbjct: 423 HFKERLGLDE---ARELELPSPFDYASQAILHIPRGLADPRSKDFINNWQQAVLPIVE-- 477 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSV 587 G VLF S AM + + D +L+QG++P+ +L+E R+ +V Sbjct: 478 --ANPGGTFVLFTSYSAMHQVQELWKDKLLDKTVLMQGEKPKNQLIEDFREE----GNAV 531 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L+ SF EG+D+KG LS V I K+ F D P++ + + ++ + PF +P A Sbjct: 532 LLATSSFWEGVDVKGLALSCVIIDKLPFAAPDEPLIEAKIQAMRKSGKNPFFDLQIPEAI 591 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPE--VPEGIVKKK 705 L Q GRLIR G +V+ D RL+ YGKR L +LP + + V E + Sbjct: 592 IALKQGAGRLIRDQKDRGVLVLCDPRLIANAYGKRFLRSLPPMRRTREQKTVIEFLQNLS 651 Query: 706 E 706 + Sbjct: 652 Q 652 >UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteobacteria RepID=A9IIW5_BORPD Length = 693 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 189/726 (26%), Positives = 295/726 (40%), Gaps = 57/726 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + ++ A L +P + PR Q ++ + + + + L EA TG+GKT Sbjct: 1 MLDLDISEFFAADGPLASALPGYAPRPAQVELAQAIGRAIT--DRATLVAEAGTGIGKTW 58 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAA-FGRGRYVCP 121 +YL+P +++ST LQDQ+Y++DLP ++ + A GR YVC Sbjct: 59 AYLVPAFVA----GGKVIISTGTRTLQDQLYTRDLPRVRAALAAPVTAALLKGRANYVCH 114 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 +L L E ++ E + +++ K D + D Sbjct: 115 YHLDRLQGDERA-------------LKSRTEISQLRQIQVFAGISKTGDRADLGKVPEDA 161 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---P 238 D+W+R+++ + +CL ++C R+C ARR+ QEA+VVV NHAL MA + Sbjct: 162 DIWQRVTSTRENCLGQDCPRIRDCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDL 221 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSAEITAP-WYRLQLDLFTKLVATCMEQFRPKTIPP 297 P+ ++ DE H LPD A L S + L+ A ++ + Sbjct: 222 LPEADTVIFDEAHQLPDTATRFLGSSVSTHQLLDFGRALEAAGLAYAREAAKWSDVSRQV 281 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH---RFAMGELPDEVLEICQRLAK 354 L C L +L + PA +A R A+ + + ++ Sbjct: 282 ETAARELRLACAPLDQLPGRKATFEAIPEPAQFDAALAALRQAVDAATRALGAVAEKHPD 341 Query: 355 LTEMLRGLAELFLNDL-----SEKTGSHDIVRLHRLILQM-NRALGMFEAQSKLWRLASL 408 L RG AE+ L + + +HD R + A + + S Sbjct: 342 LAAAARGGAEISLRLARWALPAREGAAHDDEGWGRDTHALTQPADDGPAVPQAVLQGLSA 401 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 A P +W GQ H+ H + V+ R + I+TSATL F Sbjct: 402 AADYTGPAVRWVE----HGQHHVRLHSAPLSVAQAFSR-FRKPGQAWILTSATLSVHGDF 456 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 GL + R+ +SPF++ QG + +PR EP + + + Sbjct: 457 HHYTSQLGLNDARTGRW---ESPFDYTGQGLLFVPRDMPEPQSPRFAERFVQTLMPLLQ- 512 Query: 529 VESKKHLGMLVLFASGRAMQRFLDYVTD------LRLMLLVQGDQPRYRLVELHRKRVAN 582 G LVL + RA+ R + + LL QGD R L+E R Sbjct: 513 ---ASPGGTLVLCTTLRAVDRVAGLLAEAFEDHGHEWPLLKQGDATRRDLLE----RFCK 565 Query: 583 GERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 E VLVG SF EG+DL GD+L+ V I K+ F P D PV+ + PF Sbjct: 566 LEHPVLVGSASFWEGIDLPGDVLTLVAIDKLPFAPPDDPVIEARLRACRVRGGNPFAEYQ 625 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEG 700 LP A+ +L Q GRLIR+ WG +++ D RL+ K YGKRL LP F + EV Sbjct: 626 LPEAAISLKQGAGRLIRTESDWGVLMVGDARLVEKPYGKRLWRGLPPFSRTRDLNEVLAF 685 Query: 701 IVKKKE 706 ++++ Sbjct: 686 YARRQQ 691 >UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZI1_9PLAN Length = 666 Score = 467 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 185/708 (26%), Positives = 295/708 (41%), Gaps = 78/708 (11%) Query: 7 LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 L +I + ++P + R Q + +AK LA GRHL EA TGVGK+ +YL+ Sbjct: 2 LPEEILGPAGRIAARLPGYEHRPQQLDLSGGIAKALAA--GRHLVAEAGTGVGKSFAYLV 59 Query: 67 PGIAIAREEQ---------------KTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFT 110 P I A +Q K +V+ST ++LQ+Q+ +KDLPLL+ +IP + Sbjct: 60 PAILHATSDQAENAQASEGDEEGPRKRIVISTHTISLQEQLLAKDLPLLRSVIPREFTAV 119 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDG 170 GRG YV R L A T + +EE ++ L G Sbjct: 120 LVKGRGNYVSLRRLQYAAERART------------LFSTEEEFEQVRDLVAWSKE-TGGG 166 Query: 171 LRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAA 230 I +W +++D +CL RNC Y EC ++ ARR + A+++V NHAL + Sbjct: 167 SLSDMTIKPKSTVWDEVASDSGNCLGRNCPTYSECFYYRARRRVHHAQILVVNHALFFSD 226 Query: 231 MESEAVL--PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME 288 + V P +LDE H + VA D L +S Y L Sbjct: 227 LALRRVGASILPDYDAAILDEAHTIEQVAGDHLGLSITSGQIQYLLS------------R 274 Query: 289 QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI 348 + +T L + +L + + + ++ + Q+ +H+ PD+V + Sbjct: 275 LYNDRTNKGLLVSRKLTTAQQLVMQCYLRADDFFHDCATLAQQRDHKNGRIREPDQVDNL 334 Query: 349 CQRLAKLT-EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS 407 +R E ++ + RL + +++ + Sbjct: 335 LSPSLLKLSREVRRCGEQIDDESERQNFLSAADRLQLISGEISHWIS------------- 381 Query: 408 LAQSSGAPVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL- 465 A W +++ R G+ + I V L L+ +I+TSATL + Sbjct: 382 ---QDTAGSVYWISQQASRAGKPRVELSAAPIDVGPALREHLFEKTRSVILTSATLATGK 438 Query: 466 NSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 SF + GL + + SPFN+ EQ ++++ +P + ++ +A AA Sbjct: 439 GSFDYYKSRIGL---TQSDAIRVGSPFNYREQAQLILVSGLPDPGSEKDKFEVA--AAEQ 493 Query: 526 RKQVESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQ-GDQPRYRLVELHRKRV 580 K+ + VLF S ++R +T + L L Q G +PR +++ R Sbjct: 494 MKRYIERTDGHAFVLFTSYAHLERTASLLTRFLAENNLALYSQAGHEPRTQML----ARF 549 Query: 581 ANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV 640 R VL+G SF +G+D+ GD L V I K+ F D P++ E ++ PF Sbjct: 550 KENPRGVLLGTDSFWQGVDVPGDALQNVIIPKLPFSVPDQPLLEARLEAIRESGGNPFRD 609 Query: 641 QSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 LP A L Q GRLIRS G VVI D R+ TK YG+ L++LP Sbjct: 610 YQLPEAVIKLRQGFGRLIRSSRDSGMVVILDPRMQTKAYGRTFLESLP 657 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 168/723 (23%), Positives = 291/723 (40%), Gaps = 50/723 (6%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 ++ A + P+F R+ Q M +VA + ++ L +EA TGVGK+ +YL+P I Sbjct: 257 EVFAEDGIFASKFPNFEFRSGQMTMAEEVADAFSKQD--FLVVEAGTGVGKSFAYLVPAI 314 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 + + ++VST LQ+Q++ KDLP LKKI+P + GR Y+C R L Sbjct: 315 DFSNRNKSKVIVSTNTKNLQEQLFFKDLPQLKKILPLPFQAVLVKGRENYICERRWQELL 374 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + + + GD+ D LW ++ Sbjct: 375 QEQ-----TRGITSYDAYGLLNLLVWKEHTNTGDVSE------NSSFDKNRFGVLWHKIC 423 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLD 248 +D+ C R C ++ C R+ I+ A +VVANH+L++A + + + LV+D Sbjct: 424 SDRYLCGGRKCPLFQSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTL-GEYQYLVID 482 Query: 249 EGHHLPDVARDALEMSAE------ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 E H+L A L + + ++ ++ + + Sbjct: 483 EAHNLMSAASKNLGFTLSYVDLNSLFNQLVYTSRKYSGGFLSQIIQTLQKSMLTTDQKTH 542 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQE--------AEHRFAMGELPDEVLEICQRLAK 354 + C +L I S ++ ++ + R +++ + + L+ Sbjct: 543 -IETLCTKLTGEIDSQRQVITKLFSLAEDHCVEAKSYNKLRIKDINAFEDIYTLLKELSL 601 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 + + N S S+ + L L + L + ++ + L Sbjct: 602 AFKDIMKDLTALDNVFSTLN-SNQVKDLDVLKDNLKGYLSRYMETEEI--ILQLLNPDLD 658 Query: 415 PVTKWATREEREGQLHL--WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ 472 W + + F + V + L RLL+++IP II TSATL SF Sbjct: 659 NYALWIENDPNSERNVPISTFCYAPVEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKFFL 718 Query: 473 EMSGLKEKAG--DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 SGL R ++SPF++ +Q ++I E ++ A +Q+ Sbjct: 719 NQSGLSLVTEKNVRQSIVESPFDYDKQSLLLIGSFLPEYK----DKFFQSQALGCLEQIL 774 Query: 531 SKKHLGMLVLFASGRAMQRFLDYVTD----LRLMLLVQGDQ-PRYRLVELHRKRVANGER 585 + ++G + LF S + + D+++D L QG R L++ +K + Sbjct: 775 TTTNVGTMALFTSYKDLDAVYDHLSDTLFHLNRPFFAQGKGVSRNSLLDEFKK----SKN 830 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 +VL+G SF EG+D++GD LS + ++KI F P+V + L+ N+ F LP+ Sbjct: 831 AVLLGTSSFWEGVDIQGDSLSLLILYKIPFQVPSEPLVEALIDKLERENKDSFMHLMLPN 890 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKK 705 A L Q GRLIRS G V+I D R+ K YG LP IE + I + Sbjct: 891 ALLRLRQGFGRLIRSKTDRGVVLIMDSRVSKKKYGIYFKQILPGRCIELKDEQHLISEIG 950 Query: 706 EKT 708 + Sbjct: 951 KFF 953 >UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Treponema RepID=Q73L75_TREDE Length = 709 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 152/722 (21%), Positives = 275/722 (38%), Gaps = 48/722 (6%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 L + + L + R PQ + + + E EA TGVGK+L Sbjct: 17 LDPKTVSSLLEEDGPLASFFERYEAREPQLALTKSICRCF--NEEAIGVFEAGTGVGKSL 74 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDL----PLLKKIIPDLKFTAAFGRGRY 118 +YL+P + A++ +K +V+ST + LQ Q+ KD+ +L K D+K GR + Sbjct: 75 AYLLPAMMWAKQNKKRVVISTGTINLQQQLIEKDVLTAKKILGKGFQDMKACLVKGRHNF 134 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 +C R +T QEE + + T DG R D Sbjct: 135 LCLRRMTQALREND------------FFTEGQEELDKIK----EWATETKDGSRSDLDFM 178 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP 238 + +W + ++ +C C Y+ C +RE + + ++VANH ++ A + A Sbjct: 179 PTEKVWSTVCSEPDNCPMNKCPYFSGCFVMKLKREAENSSILVANHHILFADLSVRAEGF 238 Query: 239 -------DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 P +++DE H + D A+ S++I+ Q++L + Sbjct: 239 GYQGTAVLPSYDNIIIDEAHGIEDAAQSFF--SSDISRFALHKQINLLYRFRRGKQAGIL 296 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 + E L AS N + + Q + + DE ++ Sbjct: 297 SGIVSISKKAELFTEIINLLEVAAASFNILEEQALQVLQTYQSKSLAQTSSDEKEKLLSC 356 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 + + + L N ++ G D R L + R L + + + L S Sbjct: 357 VDNFFKNINNLNIKLENLINAADGEEDEEGYIREGLVVLRRLKKMASVMENF----LNSS 412 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 W + + + F + ++ + R ++ + +I SATL+ + F+ Sbjct: 413 EFPNDVFWFEKIKTSQGEAVRFIQTPLNLAPIMRRSVFMPMATVICVSATLKIGDDFNFW 472 Query: 472 QEMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 +GL + + SPF + + IP P +N + + E + Sbjct: 473 LNRNGLYNFTEKKIIKDFFPSPFPYEKNVVFNIPTDMPMPDENNFQDAVNETVLALLE-- 530 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERS 586 L+LF S ++Q+ +YV + ++ +L QG+ R +L+ + V S Sbjct: 531 --ITQGKTLILFTSYDSLQKTCEYVREHIDEKIKILKQGEADRMQLLYEFKDDVT----S 584 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 L SF G+D+ G+ LS V + K+ F P+ + ++ F S+P A Sbjct: 585 CLFATSSFWAGVDVPGESLSHVILVKLPFAVPTEPIFKARADLIEKSGGNSFMQLSVPEA 644 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKE 706 Q GRL+RS+ G V + DKR+L K YG + ++P E + K ++ Sbjct: 645 VVQFRQGFGRLMRSNTDRGIVTVLDKRILVKRYGSIFIQSIPQTIQCFSETKAVLNKIED 704 Query: 707 KT 708 Sbjct: 705 FL 706 >UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYH8_HALNC Length = 668 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 159/706 (22%), Positives = 263/706 (37%), Gaps = 75/706 (10%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 + + L + PRA Q QM + + + R + IEA TGVGKT Sbjct: 17 KPSTLQDVFGESGVLAAAFSGYQPRAGQLQMAEIIRDAIT--DSRTVVIEAGTGVGKTFG 74 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCPR 122 YL P + + +VST LQDQI+S+DLP +K+++ + GR Y+C Sbjct: 75 YLAPILLA----GRKAIVSTGTKHLQDQIFSRDLPQIKQLMGSTTRTALLKGRSNYLCLH 130 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L + D +T + + GD+ ++ + Sbjct: 131 RLERAMTEGR------LKSPDWVTALHTIKGWSTRTRDGDIARC--------DAVSEEHG 176 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPD 239 +W +++ +CL + C + EC AR EA++VV NH L A + S Sbjct: 177 IWPLVTSTNENCLGKECPVFDECFVVKAREAAHEADLVVINHHLFCADIAIRQSGFAQLL 236 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P+ ++VLDE H LP++A + +DL +V Sbjct: 237 PEADVVVLDEAHQLPEIASLFFGSALSSGQM-----IDLLRDIVREQ------------- 278 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 A ++ +L+ ++ P ++ E+ E A + Sbjct: 279 -----QAEAVDMSDLLGVVHQFELAIDPCVLALKNARTDRIAWQELREDKTIQAAFDTLE 333 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 LA+L + H +QM ++L F ++ +W Sbjct: 334 TRLADLTAALELAAPRGKGLASCHERAIQMRQSLSHFRRSEEITT-----------EVRW 382 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 R E+ + + ++ + SATL + FS L Sbjct: 383 LERREK----SFTLNITPMDAGQTFSDVVESQPRAWVFASATLAAGKDFSHFTRRLNLNL 438 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + SPF++ Q + +P +P + + ++ ++ + Sbjct: 439 ALCQQT---PSPFDYPNQAIMYLPPNPPDPKT--DPDYTLKILRAVFPVLK-ASGGRAFL 492 Query: 540 LFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 LF S R +++ D + L L VQG Q + L+E R VL+G QSF EG+ Sbjct: 493 LFTSHRELKKAADILEGKLPFPLFVQGTQAKAALLEQFR----QSGNGVLLGTQSFWEGV 548 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D++G+ LS V I +I F D PV +K PF +LP A Q VGRLI Sbjct: 549 DVRGEALSVVMIDRIPFASPDDPVRRAREAQIKESGHSPFAAMALPEAIITFKQGVGRLI 608 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEGIV 702 R G +V+ D RL +G+++LDALP E+ + Sbjct: 609 RDVTDRGVLVLCDPRLQRTGFGRQILDALPPMRRSHSIDEIHDFFQ 654 >UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae RepID=B2SSY1_XANOP Length = 710 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 218/702 (31%), Positives = 318/702 (45%), Gaps = 24/702 (3%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 +LT +KA I Y LQ P F R Q QMI V++ LA G EAPTGVGK+ Sbjct: 19 SLTDPIKASIRDAYARLQANTPGFATRRAQSQMIGLVSRALATS-GGIGIAEAPTGVGKS 77 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVC 120 L YL G+ IA +K LV+ST VALQ Q+ +D+P LK + A GR RY+C Sbjct: 78 LGYLTAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKATGLEASVALAKGRTRYLC 137 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 RN L P + + +L W+G D + Sbjct: 138 TRNAAELEGDTSQNAMFEDEQALYDRPLSPVDADLAKRLAKAYAARTWNGDLDDAPEQVS 197 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA-----AMESEA 235 L R++T + C R C Y +CP AR +++EA++VV NHAL+++ E+ Sbjct: 198 VPLRMRITTPASGCAGRRCSYAAQCPVLKARTDVREAQIVVTNHALLLSSLSLGDAENGQ 257 Query: 236 VLPDPKNL-LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKT 294 L P LLVLDEGHH+ VA D + + R L+A Sbjct: 258 PLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTGRMQI--LIAAAYRAVDKDK 315 Query: 295 IPPLAIPERLNAHCE--ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRL 352 + L E + L + + + P ++ R A G+LP + + L Sbjct: 316 LGNLLPNEAIEVAARVSRLLKAFHADVERVWKPEPGERDPLWRAANGKLPPQWGPAIEEL 375 Query: 353 AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 + T L + +++ G D L + AL M E Q LW Sbjct: 376 GEETRALFNWVHAAHSAIAK--GKQDDSAREGLQRSLGLALEMAEQQHNLWSGWRREDKE 433 Query: 413 G-APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 G P+ +W T L HC + + L ++W + +++TSATL F Sbjct: 434 GQPPMARWITLSRDGD---LICHCSPVSAAQVLRTMIWNEVDSVVMTSATLTGGGDFQSF 490 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 +GL + A +L SPF+ Q ++++P V P D+ E H E+A + ++++ Sbjct: 491 AIDNGLPDHAEM--ASLASPFDLPNQAELIVPNFPVTP--DDREGHPKEVANYLVRELD- 545 Query: 532 KKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 G +VLF S M++ D + R +LVQG+ + +L+ H +R+A GE SVL G Sbjct: 546 WTAKGSIVLFTSRWKMEKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIAAGEGSVLFG 605 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 L SF EGLDL G+ + V I ++ F P T EWL+S F + ++P A L Sbjct: 606 LNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTSTLSEWLESRGHNAFNLIAIPHALRTL 665 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 Q GRLIRS G V+I D RLLT+ YGKR++DA+P F Sbjct: 666 TQFSGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDAMPPFKR 707 >UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A8_9GAMM Length = 692 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 203/698 (29%), Positives = 327/698 (46%), Gaps = 21/698 (3%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE-EGRHLAIEAPTGVGKTLSYLIPGI 69 +A ++ + + + DF PR Q+QM +A ++ + + R +EAPTGVGKTL+YL I Sbjct: 2 VATIFERIGQVVADFKPRPQQQQMSEFIAASMQKKAQQRVAVVEAPTGVGKTLAYLSGTI 61 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALA 128 A +K LV+STA V LQ Q+ KDLPL + ++F GR RYVCP L+ LA Sbjct: 62 EAAINNKKVLVISTATVNLQQQLIQKDLPLFSSALEHPIRFVQVKGRRRYVCPSKLSQLA 121 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + Q+ + D +L + D +WDG RD ++ +LW+++S Sbjct: 122 TAPEQQELGIDIDD---KYKRVLHMAHAKQLLSEWDQERWDGDRDSRSDKLEAELWQQIS 178 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA--VLPDPKNLLLV 246 TD C ++C +Y CP++ RRE+ A+V+VANH L+++ + VLP+P+ L V Sbjct: 179 TDSEGCAGKSCSFYLRCPYYKLRREMLSAQVIVANHDLILSDADLGGGLVLPNPEEALFV 238 Query: 247 LDEGHHLPDVARDALEMSAEI-----TAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 DE H+LP A D + T L +A F Sbjct: 239 FDEAHNLPRKALDHAAKALNFVQLYQTTETADSVLKKIPSALAFRQHDFGYMLSELRRDL 298 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRG 361 + +H ++L E+I + ++ + F L + +L CQ L + + Sbjct: 299 PAVISHLQQL-EMILQSDGLVQDVLEKRISEPRIFWNSPLVNALLIPCQNLLQRANNIYK 357 Query: 362 LAELFLNDLSEKTGSHDIVRL--HRLILQMNRALGMF-EAQSKLWRLASLAQSSGAPVTK 418 + + E + L+ Q+ +F + Q P + Sbjct: 358 HYSVLAKWIKEGLEKTQLSNKVGEALLPQVGTVQNIFGYLIDFMGLFLEPDQEDRPPNVR 417 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W ++E+ Q L H + + L+R LW +++TSATLR + F R + GL Sbjct: 418 WLSQEQFAKQQTLVIHAGPMTAAYFLDRSLWTRAYSVVLTSATLRGMGLFHRFRMDCGLH 477 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + F+A+ SPFN+ +Q + +P M+ P+ +Q E+ ++ L Sbjct: 478 RFSEQHFLAVPSPFNYSDQATLNLPHMQFLPNEQQ-QQWRQEVVKQLASIID--VDEATL 534 Query: 539 VLFASGRAMQRFLDYV-TDLRLMLLVQGDQ-PRYRLVELHRKRVANGERSVLVGLQSFAE 596 VLF S M+ + L +L+QGD +V+ H +++ G+ S++ G+ FAE Sbjct: 535 VLFTSREVMEAVYRQLPQRLTTKILIQGDTLSPKNMVQRHIRQIEAGKGSIIFGMDRFAE 594 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+DL G+L + V I K+ FP P+ + EW+ PF SLP+ S LIQ GR Sbjct: 595 GIDLPGNLCTHVIITKLPFPVFTRPIEQAKQEWIIRKGGQPFTALSLPAVSVKLIQACGR 654 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 L+R G + I D+RLL+K YGK+LL LP + ++Q Sbjct: 655 LLRKETDTGRITILDRRLLSKGYGKQLLQHLPDYRLQQ 692 >UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMW6_HALO1 Length = 650 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 169/709 (23%), Positives = 281/709 (39%), Gaps = 67/709 (9%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 + + L ++ P + PR Q + V +A +G HL EAPTG GK+L+Y Sbjct: 2 SDYIDTVFGPEGLLADRFPAYAPRPGQISLARAVDAAIA--DGEHLLAEAPTGTGKSLAY 59 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRN 123 +P A +V++T+++ LQ+Q+ +KDLP L+ I+P ++F G+ Y+C Sbjct: 60 AVPASYHAAHNGLRVVLATSSINLQEQLAAKDLPFLEGILPWPVRFALLKGKRNYLCLSR 119 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 L ++ E KR + D + G + D + Sbjct: 120 LQEAKKDGFVFD-----------ISSDIEMKRSIQ---DWASETKTGDKSELSFEPPDRI 165 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM----ESEAVLPD 239 W ST C R+C YY EC AR E ++A+++V+N+ L+ + + L Sbjct: 166 WENYSTSAEECKGRDCRYYSECFATKARAEAEKADIIVSNYHLLCVHLQLREATGQDLVL 225 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 PK + V DEGH L D+ARD + ++ + + LA Sbjct: 226 PKFDVAVCDEGHKLADIARDFFGFRVT-------------PGSLRWLAKRIQDRDHASLA 272 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + L+ + +E + L + EI + Sbjct: 273 LA--LDVESRDFFEALHRYQRS--DAYKCRLRQIEPVPYLNLHGLLREIADFFGQTRNSA 328 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + ++ D+ R + A +L + + Sbjct: 329 PDPGMDGFDAETQAARIDDLAEAQRTAARAALLADNLSAAMEL---------ANKDFVYY 379 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 + G + I V++QL + IVTSATL + +SF +++ G+ Sbjct: 380 LEELPKGG---VALCGKPIEVNEQLRTAFFDQTQSTIVTSATLTTGDSFDYVRKDLGVPS 436 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 R + +DSPF+ +Q ++P ++P +A + L Sbjct: 437 P---RELVVDSPFDFRKQVLFIVPDCVIDPRGPGFPTCVAWTVEQAVRLA----GGRTLG 489 Query: 540 LFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLD 599 LF S R + + D +L QGD+PR +LV+ R+ V SVL+G +SF G+D Sbjct: 490 LFTSYRNLDTAYARIADCGYRVLRQGDKPRTQLVDEFRRDVK----SVLLGTESFWAGVD 545 Query: 600 LKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIR 659 ++G+ LS V I ++ FPP + PV+ LK F SLP A Q GRLIR Sbjct: 546 VQGEALSCVVIDRLPFPPPNDPVIDA----LKERGGNSFLSASLPRAIIAFKQGFGRLIR 601 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEGIVKKKE 706 + G VV+ D+RL T YG+ L +LP + +V + + Sbjct: 602 ASDDRGVVVVLDERLYTTFYGRAFLRSLPAMRKSRTLEDVQTFLAETPA 650 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 176/730 (24%), Positives = 300/730 (41%), Gaps = 66/730 (9%) Query: 5 AALKAQIAAWYKALQEQIP--DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 K A + A +P + R Q +M+ V + L E +H IEA TG+GK+L Sbjct: 232 DHHKDASFAAFFAGPHTLPLDHYERRDGQWEMMKLVYEAL--ETSQHALIEAGTGIGKSL 289 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCP 121 +YLIP A E+QK +V+ST + LQ Q+ +D+P LK+++P L+ G+ Y+ Sbjct: 290 AYLIPSAFFAYEQQKRVVISTHTLQLQQQLLERDIPFLKEVVPFPLRVAVLKGKRNYLSL 349 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 A D++ L GD+D Sbjct: 350 DKFIAFLQEHHQNYDVVLLKCQLL-------VWLTQTETGDMDELNASSGARL------- 395 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK 241 W L D+ + F+ A++ +EA +V+ NHA ++ + + L P Sbjct: 396 -FWPLLVMDEEDNGGKYN------FFWRAKQRAEEAHIVITNHAFLLHDVTASTPLL-PD 447 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEITAPWY---RLQLDLFTKLVATCMEQFRPK----- 293 +++DE HHL +VA + + R+ +A M+ F + Sbjct: 448 YEHMIMDEAHHLEEVASHYFGQQVDYVSIRLILTRIGKVNENGSLAKLMKLFAGRHWNAD 507 Query: 294 --TIPPLAIPERLNAHCEELYELI---------ASLNNILNLYMPAGQEAEHRFAMGELP 342 + E L C+EL+ +I A + P + AM EL Sbjct: 508 DHFFRCGQLVEELQFECDELFRMIRRYALERKSAESGRCRYRFEPQKESGRQWSAMKEL- 566 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 + I +A L + + L F + E + S + +N+ + Sbjct: 567 --LWRIRGHVANLVDETKQLQTFFSENNMESSISAQPYSYFSDVSSLNQIID-------- 616 Query: 403 WRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 L L +S V +W EE+ + I++ + L+ I++TSATL Sbjct: 617 -TLYDLIESDDPMVVRWIEAEEKGAANATAVYSQPIQLDEFFAERLFMPKKSIVLTSATL 675 Query: 463 RSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMA 522 SF+ + GL + + SPF++ EQ ++IP S + E++ A + Sbjct: 676 TMNGSFAYIISRFGLSDF-YPICQTIPSPFSYKEQAMLMIPSDFPPISSVSLEEY-AAVV 733 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQGDQPRYRLVELHRK 578 A Q+ + MLVLF S ++ + + + +L+ QG Q K Sbjct: 734 AEGVAQIAKRIKGKMLVLFTSYELLKLTANAMKMEERNEDYVLIAQGVQSGSAT--KLTK 791 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 ++++L G +F EG+DL GD LS V I ++ F P D PV+ + E++++ PF Sbjct: 792 AFQQFDQAILFGTSNFWEGVDLPGDELSVVVIVRLPFAPPDDPVIEAKSEYIRAKGGNPF 851 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 SLP A Q GRLIR+ G + ++D+RL + +YGK L++LP I + + Sbjct: 852 YELSLPEAVLRFKQGFGRLIRTKKDKGAIFVFDRRLTSASYGKYFLNSLPSLTICEESLD 911 Query: 699 EGIVKKKEKT 708 + + K ++ Sbjct: 912 QLLQKLEKWL 921 >UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7T8_GEMAT Length = 713 Score = 460 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 178/741 (24%), Positives = 296/741 (39%), Gaps = 72/741 (9%) Query: 13 AWYKALQEQIPD------FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 Y + + + + R QR M V T EG +EA TGVGK+L YL+ Sbjct: 4 GPYGLVAQAMRGMYGIRDYEDRPSQRAMATAVTTTF--NEGGVALLEAGTGVGKSLGYLV 61 Query: 67 PGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD--LKFTAAFGRGRYVCPRNL 124 P + A + VVSTA + LQ+Q+ +KDLP L++ + D ++F G Y+C L Sbjct: 62 PALRWAAANGERTVVSTATITLQEQLVAKDLPFLQRALSDQPVRFALLKGWRNYLCLNRL 121 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 A D D + + + DG A ++W Sbjct: 122 AAAQGAGAALFDDNVSDDVAMIA--------------EWASRTKDGSLADLPTAPRGEVW 167 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL 244 +S + C C +Y +C F AR+E A+VVV NH L+++ + + + ++ Sbjct: 168 DEVSAEPDLCGRMKCEHYNDCFLFKARKEAAAADVVVVNHHLLLSDVAVRRQVQNWEDSA 227 Query: 245 L-------VLDEGHHLPDVARDALEMSAEIT--APWYRLQLDLFTKLVATCMEQFRPKT- 294 + V+DEGHHL + A L S + + L+ T + K Sbjct: 228 VLPAYKRLVIDEGHHLEEAAGSHLGSSITRRALSRLFNRLERRGKGLLPTLAAKLSGKND 287 Query: 295 ---------------IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE-HRFAM 338 L +R E L ++ + + QE + R + Sbjct: 288 LLSVASMDLLREGLFSSVLTARDRTQLLFELLAAVLEQQGGGVLRLTESFQEHDLWRNGI 347 Query: 339 GELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEA 398 G+ E+L +AK M++ E + L E L + ++ + Sbjct: 348 GDTLKELLNEIDAIAKGLAMVQTRLESDQSRLEE---------LSSTVNEIRGVTRRLQN 398 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREG--QLHLWFHCVGIRVSDQLERLLWRSIPHII 456 + + G V +W + + + +L HCV + ++ L L+ + + Sbjct: 399 AGDALMKGLMPPADGPAVVRWMEFQGKPTPHERNLAVHCVPLDLAPVLRDDLFGRVETAV 458 Query: 457 VTSATLRSLNSFSRLQEMSGLKEK-AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 VTSATL + F L+ GL + R SPF++ Q +V+P P+ Sbjct: 459 VTSATLSTDGGFQFLERRLGLAGSTSPVRAAIFPSPFDYPRQALLVVPTDLPAPNEQAR- 517 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR----LMLLVQGDQPRYR 571 +H A + G+ LF S R ++ +++ LLV G++PR + Sbjct: 518 EHFAGVTRHLHDLAH-ASDGGLFGLFTSHRDVREMAEWMRGQGLSGRWPLLVHGEEPRDQ 576 Query: 572 LVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK 631 L++ R+ R++L+G +F EG+D+ GD L + I K+ F P+V + E + Sbjct: 577 LLQRFRE----SGRAILLGTATFWEGIDVPGDALRGLLIAKLPFRVPTEPIVAAQCEAID 632 Query: 632 SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 + F LP AS L Q GRLIR+ G VV+ D R++TK YG+ LL+ LP Sbjct: 633 ARGGNAFVEYMLPHASLRLKQGFGRLIRTATDAGVVVLSDPRVVTKRYGRALLNGLPPAQ 692 Query: 692 IEQPEVPEGIVKKKEKTKSPR 712 + + +S R Sbjct: 693 RVIGAWGDVRGQVSAFYRSAR 713 >UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW Length = 846 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 141/735 (19%), Positives = 267/735 (36%), Gaps = 64/735 (8%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 L + + + R Q +++ + +HL EA TG+GK+ +YLIP + Sbjct: 136 FTENGTLSQLLKKYEYRQEQTELVEATIEAFNNN--KHLISEAGTGIGKSFAYLIPALLW 193 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPRNLTALAST 130 +E + +V+ST + LQ+QI SKD+P ++ I P +K+ GR YVC + + Sbjct: 194 LKENKTRIVISTNTINLQEQIISKDIPSIIGGIAPSVKYALVKGRNNYVCIKKV----KE 249 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 D F EEQ + DG +LW + D Sbjct: 250 GLNDHDKFDF----------EEQINFFEDIDHWLNITKDGSITDLGYKPKGELWEMVCCD 299 Query: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-----ESEAVLPDPKNLLL 245 +C +R C Y +C F+ R+++ A++++ NH ++ A + + P+ + Sbjct: 300 TDTCTHRKCEYLEDCYFYKMRKQLNAAQLLIVNHHILCADLSLYAETAGRYSLLPRYTKV 359 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRL-------------QLDLFTKLVATCMEQFRP 292 ++DE H+ + A L ++ ++ Sbjct: 360 LIDEAHNFENSASSYFGDEGSKNGILKALFYLSRIKKNKRLGVIESINNMLNEKRALIEK 419 Query: 293 -KTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG-ELPDEVLEICQ 350 + L + + + + ++ + Y + + + E++ Sbjct: 420 HEYDEILDLINKAHDLTSRVRNVVEDKSKEFITYCHKNIQTKEGLGYKFRISPELVMTSH 479 Query: 351 RLAKLTEMLRGLAELFLNDLSEKTGS---------HDIVRLHRLILQMNRALGMFEAQSK 401 + + LR + + ++ + N L + Q Sbjct: 480 WQNEGLKPLREMVLSMTSLVNICDKLYKKFFDIAIEKDFDYEEIAQMSNAYLERLKRQ-- 537 Query: 402 LWRLASLAQSSGAPVTKWATRE-EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 L L + +W ++G L L +H + V+ L L+ + + SA Sbjct: 538 LVSLNAAIDYKKDEYIRWVETRLTKKGNLILNWHLTPVTVAKNLNDFLYSRFDTVAMYSA 597 Query: 461 TLRSLNSFSRLQEMSGLKEKAGDRFVA--LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 TL SF+ G ++ + L+SPFN+ + ++ I + + D Sbjct: 598 TLTVSKSFNFFSNRLGFDFIEKNKKIEIYLESPFNYEDNARLYIATDMPDVASDTFNDFT 657 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQ-PRYRLV 573 +++ V +LF S ++ + + + L Q R+ L+ Sbjct: 658 SKVLLK----VCDVTGGRAFILFTSFSSLMNVYENTSEKLKSKNINALAQTASIHRHTLL 713 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 ++ + +VL G+ SF EG+D+ G L V I K+ F P+ +++ Sbjct: 714 DMFKA----SSNNVLYGVDSFWEGVDVAGKNLEVVIIPKLPFAVPTDPISEGRYRYIEEN 769 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 F +LP A Q GRLIRS G V + DKRL TK YG + + +LP + Sbjct: 770 GGNAFLDYALPFAVIKFKQGFGRLIRSKDDRGVVFVLDKRLYTKTYGTQFIQSLPNAKVL 829 Query: 694 QPEVPEGIVKKKEKT 708 + + E Sbjct: 830 RGSMREIFNDMNNFF 844 >UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N856_9GAMM Length = 662 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 179/712 (25%), Positives = 286/712 (40%), Gaps = 56/712 (7%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 A +KA + A AL + + D+ PR Q+++ VA L+ + L EA TG GKT +Y Sbjct: 2 ADIKA-LFAADGALAQAVRDYQPRPGQQELAEAVADNLSDD--GILLAEAGTGTGKTFAY 58 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRN 123 L+P +A K +VSTA LQ+QI++KDLPL++K++ + GR Y+C + Sbjct: 59 LLPLLA----SGKKGLVSTATRNLQEQIFTKDLPLVRKVLRSTARVALLKGRRNYLCHHH 114 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 +EP + A+ ++ D L T+I D + Sbjct: 115 YHQYLDSEPHTAEEKAWRRA---------------IERFFDKTADGDLVALTEIPEDAPV 159 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---PDP 240 R+++ +CL R+C ++ EC AR++ +EA+V + NH L++A ++ P Sbjct: 160 LARITSTAENCLGRDCAFFEECFVQQARQKAKEADVTIINHHLLLADFALKSEGFAEILP 219 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 V+DE HHLP A L ++ + L + Sbjct: 220 DIQAFVIDEAHHLPLTAIHFLGDRLS---------ARQLLGFISDGEAAALAEAPDALEL 270 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 E L + +++ ++ + Q HR EL + L +L + Sbjct: 271 RETLRELKLQHSKILLAVRQPTETRLDEEQLFAHRAFWTEL-----QALAALFELLHIQL 325 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 + L+ G ++ + A K A P W Sbjct: 326 APQKARGKLLAHLDGRCQDLQKLLAAFLAEDRAALPAATEKTGNDAENNDKPPVPRAIWL 385 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK 480 G H V + + + + S SATL F GL E Sbjct: 386 DV----GPRHYTLCSVPVNAAGRFASWIANSNASWAFLSATLAVNGKFDHFSRELGLSEY 441 Query: 481 AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL 540 R + L SPF+ Q + P +P N+ ++ + + +E + +L Sbjct: 442 ---RSIQLQSPFDFRHQALLYHPPGLPDP---NDARYNDALISAILPVLE-RSRGRAFLL 494 Query: 541 FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 F S +A+ + D LLVQG + L+ R+ ER+VL+ SF EG+D+ Sbjct: 495 FTSYKALHAAERALRDTDYHLLVQGRAGKNILLADFRRH----ERAVLLATSSFWEGVDV 550 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 +GD L V I K+ F + PV L+ PF +LP A L Q VGRLIR Sbjct: 551 RGDRLVCVVIDKLPFAAPNDPVTRARHRLLEDKGLSPFMHDTLPQAIITLKQGVGRLIRD 610 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ-PEVPEGIVKKKEKTKSP 711 G +G +V+ D RL KNYG+ L++LP + EV + E TK+ Sbjct: 611 SGDYGVLVLADPRLTQKNYGQTFLNSLPPMSKTRKIEVIDRFFAYHETTKTA 662 >UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH Length = 651 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 173/702 (24%), Positives = 265/702 (37%), Gaps = 86/702 (12%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M A +++ L E + +F PRA Q+QM A V + L + L +EA TGVGK Sbjct: 1 MNPNA---SEVLGPDGPLAETLTNFRPRAAQQQMAAAVERALEARQA--LVVEAGTGVGK 55 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII------PDLKFTAAFG 114 T YL+P + + + ++ST LQDQ++ KDLP ++ + + G Sbjct: 56 TFGYLVPVL----MDGRRTILSTGTKNLQDQLFQKDLPFVRDALVGAGLGRVPRVALLKG 111 Query: 115 RGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDH 174 R Y+C L + + ++ + + + Sbjct: 112 RSNYLCRHRLDLAREDGR---------------LGAAQTDQLLRVVRWVSRTTRGDIGEL 156 Query: 175 TDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE 234 + I D LW ++++ +CL ++C Y +C ARRE QEA++VV NH L+MA + + Sbjct: 157 SGIPEDSPLWPQVTSTPDNCLGQDCPEYEDCFVVRARREAQEADLVVINHHLLMADLTLK 216 Query: 235 AVL---PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 P VLDE H LPDVA S R LDL VA + + Sbjct: 217 EEGFGEILPSADAFVLDEAHQLPDVASAFFGRSVGS-----RQLLDLARDAVAEQLREAS 271 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 L + L +A+L + L R + I Sbjct: 272 DMG--------DLRDAADALSMAVAALRSELGA-------TSGRSPWTRHEQDAR-ITGA 315 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 + L L L G R L Sbjct: 316 MDSLVARLETLVMWLDTAADRGKGLEQCARRAN----------------TLRARLLAFMK 359 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 +W R H + V+++ + I SATL F Sbjct: 360 PEPDTVRWVETFTR----AFALHATPLNVAERFGERMRAYPSAWIFASATLSVGGRFEHF 415 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 GL+ + LDSPF++ ++ +P +P+ N + E A + Sbjct: 416 TGRLGLE---QAETLMLDSPFDYSRNARLYLPANMPQPNAPNHTAAVVEAALPVIE---- 468 Query: 532 KKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 G +LF S RA++ + L LLVQG PR L+ R +VL+G Sbjct: 469 ANPGGTFMLFTSHRALREAAQLLEGRLERELLVQGTAPRDELLARFRAA----GDAVLLG 524 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 SF EG+D++G LS V I K+ F D P++ + ++ PF LP A +L Sbjct: 525 AHSFWEGVDVRGRALSCVIIDKLPFAAPDDPLLEARLQAIRDAGGNPFMDYQLPQAVLSL 584 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 Q VGRLIR G +++ D R+ TK YG+ + +LP P Sbjct: 585 KQGVGRLIRDVTDRGVLMLCDPRIRTKAYGRLFISSLPPIPR 626 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 458 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 168/710 (23%), Positives = 287/710 (40%), Gaps = 39/710 (5%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 + P + PR Q +M+ V ++L E L +EA TG GK+L YL+P A E + Sbjct: 248 FPQLFPGYEPRTGQLEMMRHVYQSLDQETP--LLVEAGTGTGKSLGYLVPAAHYAIEHET 305 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 ++VST + LQ+Q++++DLPLL+++ + T GR Y+ R S + Sbjct: 306 PIIVSTHTIQLQEQLFARDLPLLRQLFEAPVDITLLKGRSNYMDLRKFEFFLSETEEPYN 365 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 GDL+ G +IA + + + +D S L Sbjct: 366 F-------TLAKAILLVWLTQTETGDLEEVSLPGGAAQGNIA----IKQLIQSDSQSQLG 414 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV 256 R +Y F A R ++A ++V NHAL+ + ++ EA PK L+LDE H + +V Sbjct: 415 RFDPWYSRDFFHHAVRRAKQATIIVTNHALLFSDIQYEA-GVLPKGCPLILDEAHQIEEV 473 Query: 257 ARDALEMSAE-------ITAPWYRLQLDLFTKLVA-----TCMEQFRPKTIPPLAIPERL 304 A + + + L T+L++ E + +L Sbjct: 474 ASHHFGLVFDGHSFDRIFRQLGFSSDKKLLTRLISLSDQYDLTELVEAHSETIDETLTKL 533 Query: 305 NAHCEELYELIASLNNILNLYMPAGQ-EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 + L +I + L + RF + ++ + +L A Sbjct: 534 LEEADGLLTIIQAYGLELASRKERREGRVTVRFKRLDQSMRAVQESAKRVELVLRRLRQA 593 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 ++ L H R ++ + +G E + + + W Sbjct: 594 IRAIHKLFHDQREHMSYRERSVVADLKTVIGQLEEVEQ--AIFETMLAPHDETVSWIETT 651 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 + +L + I +S++L R ++ I+TSATL N F +++ GL E Sbjct: 652 AKNRKLT-RIYTQPIDISNRLHREVFSK-RTCILTSATLTVSNKFQFIEQRLGLSELETR 709 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 RF+ + SPF + E+ +++IP + + +A + + MLVLF S Sbjct: 710 RFI-VPSPFGYAEKVRLMIPTDLPLLQDVPQATYSEVIADAIIR-IAEVTEGRMLVLFTS 767 Query: 544 GRAMQRFLDYVTD---LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 +++ D R LL QG R + K+ + +L G SF EG+D+ Sbjct: 768 NEMLRQTHDATKMALPERFTLLSQGITQGSR--QRLMKQFKQLDACILFGTASFWEGVDV 825 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 GD LS + I ++ F P D P+V E ++ + F SLP A Q GRLIR+ Sbjct: 826 PGDDLSCLVIVRLPFAPPDQPIVQARSEQIEQQGKSSFFEYSLPQAIIRFKQGFGRLIRT 885 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 G V ++D+R+ T YGKR + +LP P+ + E + + Sbjct: 886 TNDRGVVFVFDRRIETTRYGKRFVTSLPNVPLLAKPLDELTAELELFLNE 935 >UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L5B4_MAGSM Length = 660 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 171/697 (24%), Positives = 274/697 (39%), Gaps = 77/697 (11%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M + + AL + + + PRA Q +M VA+ + L +EA TG GK Sbjct: 4 MDEIESWTHALFGPQSALAQCLESYEPRAAQVRMAELVARA--AHQQDLLIVEAGTGTGK 61 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 TL+Y++P +A+ K +VVSTA ALQDQI KDLPLL++++ T GR Y+ Sbjct: 62 TLAYMLPLLAM----GKKVVVSTATKALQDQILEKDLPLLRQVVGSRFSATLLKGRANYL 117 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C LT + + + EQ ++GD D K ++ Sbjct: 118 CLHRLTQMRANRS------LLRHEARAWLEAIEQWSSTTVQGDRDELK--------ELPE 163 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAV 236 D+W LST+ CL + C + C F AR +EA++VV NH L A + Sbjct: 164 RLDIWPELSTNGDDCLGQECPDLQACYLFKARARAKEAQLVVVNHHLFFADLAVREGGFG 223 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P+ ++V DE H +PDV + +L C + + Sbjct: 224 EILPEYQVVVFDEAHQIPDVVTRFFGLEVSNFQML---------ELARDCRREMDMVGMD 274 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L + L E L ++ + ++A + E P L + + Sbjct: 275 DLDLLHHLTVIEERAALLRSAFP------VENVRDALAPHHLQEEPGRALVMAE------ 322 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 + L LAEL L G R +L + ++ Sbjct: 323 QALHKLAELLEPHLERSAGMASCGRRLEKLLIASGSIRTL---------------DDPAR 367 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL---NSFSRLQE 473 W R ++ + V ++ +L+ + + TSATL + F + Sbjct: 368 VYWYETRNRG----VFLQASPLNVGLTMQEMLYPRVQCAVFTSATLATGQGEKGFHYFMQ 423 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 GL + L F++ Q ++ +PR EP+ E Sbjct: 424 QLGLDAQVATCE-QLPPVFDYGTQARLYLPRRLPEPTAPGFTAMFMEELVDLL----HAS 478 Query: 534 HLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 L LF S R M + + + + + VQG++P+ L+E+ + E SVL+G Sbjct: 479 RGRALCLFTSYRMMGQVQQLLPSRIPYPVYVQGERPKRALLEMFKNH----EASVLLGTS 534 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 +F EG+D+ G LS V I ++ F P D P+ + +S PF S+P A L Q Sbjct: 535 TFWEGVDIPGAALSMVVIDRLPFTPPDDPISAARNRYCESEGGNPFMQLSVPQAILTLKQ 594 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 GRL+R G + + D R+ + YGKR ++ LP Sbjct: 595 GAGRLLRRRSDRGVIAVLDTRISRRPYGKRFINGLPP 631 >UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR3_BURPP Length = 755 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 176/771 (22%), Positives = 280/771 (36%), Gaps = 119/771 (15%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEG------------------ 47 A +I A L QI + RA Q +M VA + Sbjct: 41 AELDEIFAANGLLARQIDGYRSRASQIEMSRAVAAAMEASGRAMPEPAMFEAQKRPARRL 100 Query: 48 -----------------------RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 L +EA TG GKT +YL+P + ++VST Sbjct: 101 QGAADTAAEAAEGVEAGGLDGSENTLIVEAGTGTGKTYAYLVPAMLW----GGKVIVSTG 156 Query: 85 NVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 LQDQ++ +D+P ++ + + GR Y+C L A Sbjct: 157 TKHLQDQLFQRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGR----------- 205 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 +++E + + + + +W +++ + +CL + C +Y+ Sbjct: 206 ---LPSRQETSYLQDIVRFAKITRTGDKAELASVPETAAVWSMVTSTRENCLGQECPHYK 262 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPKNLLLVLDEGHHLPDVARDA 260 +C ARRE Q+A++VV NH L A + + P ++ DE H LP+ A Sbjct: 263 DCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLF 322 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN 320 + T L+L VA + R + +L A+L Sbjct: 323 FGETLSTTQF-----LELARDSVAEGLGHARETV---------------DWVKLGATLER 362 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 A +E R ++G ++ + L + L L + + I Sbjct: 363 AARDVRLAFKEDSVRLSIG----QLADDHPLFPALETLETELDALASALAGQAERAESIG 418 Query: 381 RLHRLILQMNRALGMF---------EAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 R ++ L + EA ++ +W + Sbjct: 419 ACLRRARELQGVLAGWTTPPTPTEREAADVASTDGKTERADPNEKVRWIEVFSH----TV 474 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 H + V+ + I TSATL F+ GL K R + L SP Sbjct: 475 QLHETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNAK---RSMTLPSP 531 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 F++ QG + +PR +PS + + A + G+ +L + RA+ R Sbjct: 532 FDYPTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIE----ASGGGVFMLCTTLRAVDRIS 587 Query: 552 DYVTD------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 + D LLVQGD R L++ R + ++LVG QSF EG+D++GD L Sbjct: 588 AKLRDTIEARGWDYPLLVQGDASRTELLDRFR----SYGNAILVGSQSFWEGVDVRGDAL 643 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 S V I K+ F P D PV+ E L PF V LP A L Q GRLIR+ G Sbjct: 644 SLVVIDKLPFAPPDDPVLSARLEALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRG 703 Query: 666 EVVIYDKRLLTKNYGKRLLDALPVFPIEQ--PEVPEGIVKKKEKTKSPRRR 714 ++I D RL+ K YG+R+ +LP F + V E + + R Sbjct: 704 VLMICDTRLVDKPYGRRIWQSLPPFKRTREIEVVREFFEESATPAQEADRA 754 >UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4LDA1_TOLAT Length = 672 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 168/713 (23%), Positives = 277/713 (38%), Gaps = 81/713 (11%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 L A L + IP F PR Q M V+K + E L +EA TG GKT + Sbjct: 13 DPLLNNDYFAENGLLAKAIPGFAPRQAQVHMAEAVSKAI--ETAGRLLVEAGTGTGKTFA 70 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGRGRYVCPR 122 YL+P + + K +++ST + ALQDQ+Y +DLP LL + GR Y+C Sbjct: 71 YLVPAL----DSGKRVIISTGSKALQDQLYERDLPTLLLAMQYGKPVAQLKGRSNYLCTY 126 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L A L+ E+ + K++ + D + Sbjct: 127 RL--------------ALLEQEMHFLAADVFADLPKVRQFKARTVSGDVADIPGLQEQAP 172 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPD 239 + +++ +CL R C Y C ARR+ +A+VVV NH L A M + Sbjct: 173 ILPFVTSTNDNCLGRECPDYENCFLVKARRKALDAQVVVINHHLFFADMSVKDTGFGELL 232 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P + + DE H LPD+A S ++ ++ ++ R Sbjct: 233 PDADVYIFDEAHQLPDIASQYFGESLS-------------SRQLSDVADELRLAYRLEAK 279 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 +L + L + ++ + G + ++ + L +L E + Sbjct: 280 DMAQLGKAADRLVQDCQAMRLAFGVDPSRGNLRDVLVQP--------QMQRELQRLKESI 331 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + ++ L +++ ++ L + + + + A W Sbjct: 332 KFCYDVCKLALGRG------EQINNCFERLAGFLTTVDHVTAI---------TEAGAAYW 376 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 +R H + + ++++ + + R I TSATL F + G+ + Sbjct: 377 YETTKR----HFTLNVTPLSIAERFAQEVMRVGCSWIFTSATLTVGEEFDYFSQRMGVGD 432 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 LDSPF++ Q + +PR + SI +AE +QV G Sbjct: 433 AD---TCLLDSPFDYAHQSLLCVPRNLPDTSIYQRATQLAERLLPVIEQV----PGGCFF 485 Query: 540 LFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGL 598 L S ++ + + D L +LVQGD + R++ +VLV SF EG+ Sbjct: 486 LCTSYNSVNQIAQVLRDKLDRTVLVQGDDNKQRIL----ADFVADGHAVLVATSSFWEGV 541 Query: 599 DLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLI 658 D++G LS V I K+ F D P++ E + PF+ LP A L Q VGRLI Sbjct: 542 DVRGAALSCVIIDKLPFTSPDEPLLKARMEDCRMQGGDPFQQLQLPEAVIVLKQGVGRLI 601 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSP 711 R + G +++ D RL+ K YG L +LP P + I + E K P Sbjct: 602 RDYQDRGILILCDPRLVNKPYGAAFLKSLPPIPRCRD-----ITRLTEFWKLP 649 >UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 Tax=Gammaproteobacteria RepID=A1SX28_PSYIN Length = 662 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 155/710 (21%), Positives = 279/710 (39%), Gaps = 78/710 (10%) Query: 7 LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLI 66 L + + AL +Q+P FI R Q +M V + + ++ +L +EA TG GKT +YL Sbjct: 23 LISSFFSASGALSKQLPFFISRDAQIEMADAVTQAITKKQ--NLVVEAETGTGKTFAYLA 80 Query: 67 PGIA-IAREEQKTLVVSTANVALQDQIYSKDLPLL-KKIIPDLKFTAAFGRGRYVCPRNL 124 P + + + +++ST + ALQ+Q++ KDLPLL T GR Y+C L Sbjct: 81 PALLTFDKASSEKIIISTGSKALQEQLFLKDLPLLMAATNFTGSVTVLKGRSNYLCNERL 140 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 ++ L + + GDL K D+A D + Sbjct: 141 ARFMLETKQREKALQIE------LIKIKNWSLTSKTGDLAEIK--------DLAEDALII 186 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPK 241 ++++ +CL R C + +C AR++ ++++VV NH L A + + P+ Sbjct: 187 PSITSNNDNCLGRECPSFDDCFIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPE 246 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 + + DE H LPD+A S ++ + ++ L Sbjct: 247 AGVYIFDEAHQLPDIASLYFGESLS-------------SRQLIELAKEIEFVYRTELREA 293 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRG 361 ++++ ++L S + + R E ++ + ++ +++ Sbjct: 294 KQMSKAADQLR---LSALDFRMAFAIDKGTGSWRDKSKERVMQL-----HVDRILQVMDF 345 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWAT 421 L E+ L L + + L + + + W Sbjct: 346 LKEVILERLGKSDVLDHCFERLTQFTLL---------------FKKLNSVNESGFSYWFE 390 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA 481 ++ H + + V+ + + + I TSATL F E+ GL+E Sbjct: 391 CTKQ----HFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLGLQESQ 446 Query: 482 GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 + L SPF++ +Q V+PR+ EP + E A + L Sbjct: 447 C---LQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLAPVIR----ASKGRCFFLC 499 Query: 542 ASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 S M + L +L+QG++ + L++ ++LV SF EG+D+ Sbjct: 500 TSHAMMNQLAAGFRQTLTFPVLLQGEKSKQALLDEFINH----GNALLVATSSFWEGVDV 555 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 +G +LS V I KI F + P++ E + + PF LP A Q VGRLIR+ Sbjct: 556 RGQVLSCVIIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGVGRLIRA 615 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 G +++ D RL+T+ YG L++LP P + + + K+ Sbjct: 616 EKDKGVLIVCDTRLVTRKYGNLFLNSLPCMPRTRS-----LDNAIDFLKT 660 >UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteobacteria RepID=Q6AMF2_DESPS Length = 776 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 176/710 (24%), Positives = 278/710 (39%), Gaps = 77/710 (10%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE----------GRHLAIEAPTGV 58 L I + PR+ Q++M V+++L R L +EA TG+ Sbjct: 121 EDFFGENGRLAGLIDHYQPRSGQQEMAQAVSRSLMDSNDPDPHAVSAPPRVLVVEAETGI 180 Query: 59 GKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGR 117 GKTL+YL+P + K +VVSTA LQDQI K++PLL+K+ + GR Sbjct: 181 GKTLAYLLPAVI----SGKRVVVSTATRNLQDQIIHKEIPLLEKMFGGRVSAQCVKGRQN 236 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y+C S+ ++ EQ + + GD W + Sbjct: 237 YLCLYKWYQHRSS-------AQLSLIAQDDEDKIEQWLASTVTGDRAELHW--------L 281 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL 237 A D LW ++S+ CL C C RR A +++ NH L + + + Sbjct: 282 ADDASLWHKISSQSDQCLGSECPEQENCFISRLRRRAAAARILIVNHHLFFSDLALKKEG 341 Query: 238 ---PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKT 294 P+ ++ DE HHL D+A S + R L +L + Sbjct: 342 YGEILPRYQAVIFDEAHHLEDIATTFFAKSFS--SYQLRDILSDAERLGDKIL------- 392 Query: 295 IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK 354 + + L + LN ++++ + + + E E + Q + Sbjct: 393 -----VSDEHKNLLSRLSGMRVRLNAFMHVFPKKRGKTALKELVTEYGQEAWQ--QEVEL 445 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 L + L + + G +VR E L ++ + Sbjct: 446 LATGIAKLIVALTDLHFKGEGWQTLVRR------------CQECHDNLRLTGLARDTTSS 493 Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEM 474 W E+ + I V+ +L L+ + I+TSATL F L+E Sbjct: 494 NYVHWFEHREK----SIVLSVTPISVAKELNEFLYAGVESTIMTSATLSIGEKFDYLRER 549 Query: 475 SGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 GL +++ SPF + EQ + IP N + + + +E Sbjct: 550 LGLPADT--KYLRFASPFAYKEQALLYIPEGGFP--ETNAPDYGQKSCERILQILEQ-SR 604 Query: 535 LGMLVLFASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 L+LF S AM+R ++TD +LVQG R L+E + SVL+ + S Sbjct: 605 GRALILFTSFSAMERAATWLTDKIDYRMLVQGRHSRKHLLEEFKA----DRDSVLLAVAS 660 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D+ G+ LS V I K+ F PV+ E++K+ PF +P A L Q Sbjct: 661 FWEGIDVAGEALSCVIIDKLPFEVPTDPVIQARMEYIKAAGGNPFMDFQVPRAVLTLRQG 720 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEGI 701 VGRL+RS G + I D RL +K YGKR L +LP P+ + EV + Sbjct: 721 VGRLMRSDRDRGLITILDIRLFSKFYGKRFLRSLPPAPVTRSLDEVKKFF 770 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 162/708 (22%), Positives = 276/708 (38%), Gaps = 51/708 (7%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 + + ++ + R Q QM+ V +L G G HL +EA TGVGK+L+YL Sbjct: 266 DEIESLFGTDGPIGRELRGYEVREQQLQMLRAVGDSLMG--GVHLVVEAGTGVGKSLAYL 323 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 P + A E + +VVST LQ+Q++ KD+P L++++ D GRG Y+C Sbjct: 324 TPAVYFAVENGERVVVSTNTKNLQEQLFLKDVPFLERVLDIDFSVALLKGRGNYICQARW 383 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + + + L L + + ++ +W Sbjct: 384 RQVLEKGLSSSERSQLLPVAL----------------WEQETRSGDISENAAFRQYGYVW 427 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLL 244 R+S D CL + C C AR+ Q A +V+ NH+L+ + E++ + Sbjct: 428 NRISADGGPCLGQKCPMRETCYLLKARKASQAAHLVIVNHSLLFSDTEADNR-ILGEYSY 486 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA----TCMEQFRPKTIPPLAI 300 L+ DE H++ VA + L + + R LD + E + A+ Sbjct: 487 LICDEAHNMEQVATEHLGKRSNV--WRARAMLDNLYRNEGGPSGDLGEVMGALSGTDGAL 544 Query: 301 PERLNAHCEELYELIASLNNILNLYMPA--------GQEAEHRFAMGELPDEVLEICQRL 352 E A E L + + + + + A E F E Sbjct: 545 LESATAGVERLASDVTAASAAVETFFTALAARHIDLNDGREVEFGKLRYRQEAPVSALLE 604 Query: 353 AKLTEMLRGLAELF--LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQ 410 +L +L L+ + +++ ++ R + + L +A+ Sbjct: 605 EELAGVLAALSTVARGAESVADLITDSELDRAESFVQNLTFHAARVR--EFAADLEYVAE 662 Query: 411 SSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSR 470 ++ W + V++ + L+ + +I TSAT+ SF Sbjct: 663 AADPGSVFWLDVRTFRDVFECELRSAPVSVAEMMGDFLYSRVDSLIATSATMTVDGSFDF 722 Query: 471 LQEMSGLKEKAGDRFVALD--SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 + E GL + + LD SP+++ Q V+ +PS Q ++ + ++ Sbjct: 723 VMERMGLDLIPDWKVLTLDVGSPYDYDAQSIAVVAGYLPQPSSSGFNQTVSRLVVKLAER 782 Query: 529 VESKKHLGMLVLFASGRAMQRF----LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGE 584 + G LVLF + A+ LD +T ++L QG + ++ A Sbjct: 783 AQ----GGTLVLFTARSALDAVFKSVLDPLTSRGKLVLAQGHGGASSAL---LEQFAREV 835 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 SVL+ SF EG+D+ G L Q+ I K+ FP PVV E ++ F +P Sbjct: 836 DSVLLATSSFWEGVDVPGRSLEQLVIVKLPFPVPRDPVVEAHCERYEADGENSFGRYMIP 895 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 + L Q GRLIRS G V+ D RL T+ YG+RLL+ LP + Sbjct: 896 RTAIRLRQGFGRLIRSTTDSGAVIFLDSRLSTRAYGERLLEQLPTRTV 943 >UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQY0_9GAMM Length = 664 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 181/718 (25%), Positives = 291/718 (40%), Gaps = 79/718 (11%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +AA++A + L E + F PR PQ++M V L G+ L +EA TGVGKT + Sbjct: 15 SAAVRA--LSPGGDLAEALHGFRPREPQQRMAVAVESAL-GQAPTALLVEAATGVGKTFA 71 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPR 122 YL+P + + ++ ++ST LQDQ++ +DLP + + + + GR Y+C Sbjct: 72 YLVPAL----QARRKALISTGTKTLQDQLFERDLPTVCEALGYRPRTALLKGRANYLCHY 127 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI-AIDD 181 L A+ + + Q E+ + G I A D Sbjct: 128 RLELAAAEAGG----------QTQRSAQRERMPVIEALRQFARTHPTGDLGQAGILAEDS 177 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---P 238 LW ++++ +CL C Y +C AR+ Q+A++VV NH L++A M + Sbjct: 178 PLWPQVTSTVDNCLGGECPQYNDCFVVQARKRAQDADIVVVNHHLLLADMALKEEGFGEL 237 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL 298 P+ +++DE H LP++A +S L + V EQ P+ + Sbjct: 238 LPEVDAVIVDEAHQLPEIAGAFFGVSVGS------RALRDLARDVRREQEQAAPEMV--- 288 Query: 299 AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 + E L ++ + A Q E R A ++ +E ++ L +L E Sbjct: 289 -----------MIREAAVELETVVKKLLEATQGMEPRAAW-DVVNEKGQVDPSLEELDEA 336 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 LR L++ G + ++ +L M L + Sbjct: 337 LRALSDALAPATERGPG---LEQVQGRVLLMRERLQGWR-------------EDTPDTVA 380 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W R + L H + + L + + TSATL F+ GL Sbjct: 381 WVERFAQ----SLILHRTPLDAARPLAQRRAARPAAWVFTSATLAVGEDFTHASRRLGLP 436 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + L+SPF+ Q +V P+ P+ N + A+ + G Sbjct: 437 VDVAQQ--RLESPFDFARQACLVHPQ-PPLPN-PNSPDYTRACVAWAWPLLRDNPGGG-F 491 Query: 539 VLFASGRAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAE 596 LF S RA+Q + LLVQG+QPR L+ R+ + L+G SF E Sbjct: 492 FLFTSHRALQEAAALLRAELPDRELLVQGEQPRNDLLARFRE----SGNAWLLGAHSFWE 547 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D++G+ LS V I ++ F + PV+ + L++ R PF SLP A L Q GR Sbjct: 548 GVDIRGEALSVVIIDRLPFAAPNDPVLQARAQALEAEGRSPFMEFSLPQAVLALKQGAGR 607 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRR 714 LIR G + I D RL K YG+R L +LP F + + + + R R Sbjct: 608 LIRDADDAGILAICDPRLTGKPYGRRFLASLPPFYRTRDPIA-----ALQFLATARER 660 >UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad3 n=6 Tax=Legionella RepID=Q5ZU85_LEGPH Length = 666 Score = 451 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 170/701 (24%), Positives = 282/701 (40%), Gaps = 83/701 (11%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L IP F+ RAPQ + +A + + L EA TG GKT +YL+P + Sbjct: 33 GRLSTAIPGFVARAPQADLAVAIANAIV--QRSILVAEAGTGTGKTFAYLLPCLL----S 86 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 K ++STA LQDQ++ KDLP L + + ++ GR Y+C + A Sbjct: 87 GKKALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEG--- 143 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD-IAIDDDLWRRLSTDKAS 193 F + + + ++++ G+R I D +W +++ + Sbjct: 144 ----QFQSPQCAHEILHVRDKLSQMQE--------GVRSELPEINEDSSVWHYVTSTTDN 191 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---PDPKNLLLVLDEG 250 CL C + C AR+ EA++VV NH L A + + P ++V DE Sbjct: 192 CLGAECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEA 251 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H L D+A + RL F LV + ++ I + N + Sbjct: 252 HQLADIASNFNG---------ERLGTRQFKDLVDDMLNEWP--------ILDLANQPLKS 294 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 + L + L +P +E + ++++ + + L + + L Sbjct: 295 ISHKADKLVDQLLNALPTREE--------RISWDLVKRNKEFMEAWNTWLSLKDELIQCL 346 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 E + DI L R ++ L + +W R + Sbjct: 347 -ESKDTADIPGLKRCKERL----------LDLETVLLSFTEENNHKIRWIERFKH----T 391 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490 L FH V++ +LL I TSATL + F + GL + + + L S Sbjct: 392 LVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASVFDSFCKPLGLDK---VQTLLLSS 448 Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550 PF++ +Q + +PR +P + + + E A + LF S +A++ Sbjct: 449 PFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEAC----GGRCFFLFTSHKAVKLV 504 Query: 551 LDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 +++ L+ LL+QGD+ + L+ R +VL+G +F EG+D+KG+ LS V Sbjct: 505 AQMMSNTLKYPLLIQGDEAKPILLSRFR----QLGNAVLLGTSTFWEGVDVKGEALSCVI 560 Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 I K+ F PV+ +LK F+ SLP+A L Q VGRLIR G ++I Sbjct: 561 IDKLPFANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMI 620 Query: 670 YDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 D RL + YG+ +L +LP P + E K K Sbjct: 621 ADPRLTGREYGRTILASLPGLPKTRDE-----EKVLHFIKE 656 >UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-terminal n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87EB6 Length = 643 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 154/706 (21%), Positives = 278/706 (39%), Gaps = 81/706 (11%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + + + L E I + R Q +M V + +E L +EA TG+GKT Sbjct: 1 MVKSTITEFFDVNGPLSEVIEGYQIRPSQVEMSQMVDAAIKNQEP--LVVEAGTGIGKTF 58 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCP 121 +YL P +A +++STA LQDQ+++KD+P +++ + +K GR YVC Sbjct: 59 AYLAPALAA----GGKVIISTATKNLQDQLFNKDIPKIREALKIPIKVNLLKGRANYVCQ 114 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 L N+E+ K+K D + + ++ Sbjct: 115 LRLDDSIQGG--------------QFVNKEDGAYLEKIKQFSDHSNSGEISEVENVPEFS 160 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP--- 238 +W +++ +CL + C + + C AR+E AEVV+ NH L A + Sbjct: 161 TIWPMVTSTADNCLGQGCEFAKSCFLLKARKEALNAEVVIVNHHLFFADFMLKDEDISEI 220 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL 298 PK ++ DE H +PD+A + Y +Q Sbjct: 221 LPKADTVIFDEAHQVPDIASIFFGNNFSTNELIYLMQDAQL------------------- 261 Query: 299 AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 + ++L + ++L ++ + + + + R ++ + + + ++L + Sbjct: 262 -LYDKLGKNQKKLIDIASGVQEEIKHLRLEFGSSSERVTFEKITN-IDKFTEKLQSIHSS 319 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 L ++F + I+ + I L +L+ + Sbjct: 320 FEQLGKIFSLLDDQSPEQKKIMERYEGI---------------LEKLSHWLKEKNDQYVY 364 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W + + F+ +++ R ++ I TSATL +SF Q + GL Sbjct: 365 WLDIFSK----SIQFNMTPFSIAEGFGRFRKQNKISWIFTSATLAVNDSFDFFQNLMGLS 420 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + + L+SPF+ + +P +P+ I + + + Sbjct: 421 DATSKK---LNSPFDFKNNACLYVPNNMPDPNSSIFNLTIIKKTYPLIQAAK----GRTF 473 Query: 539 VLFASGRAMQRFLDYVT------DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 +L S ++M+ + D+ +L QG+ + L+E R + +VL+G Sbjct: 474 ILSTSLKSMREISALLKSEFEEHDINFPILTQGEDSKRTLIE----RFKSYGNAVLIGSM 529 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF EG+D++G LS V I K+ F PV + LK+L PF LP A +L Q Sbjct: 530 SFWEGIDVRGPSLSLVIIDKLPFHSPGDPVFESRINRLKALGENPFMSFQLPQAIISLKQ 589 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 GRLIR G ++I D R++ K YGKR+ +LP F + E+ Sbjct: 590 GAGRLIRDEIDKGVLMICDPRIIDKPYGKRIWKSLPDFKRTRNELD 635 >UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammaproteobacteria RepID=A5CX48_VESOH Length = 686 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 209/700 (29%), Positives = 360/700 (51%), Gaps = 28/700 (4%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGE---EGRHLAIEAPTGVG 59 L+ LK +I +K L+E + FI R Q +MIA+++KTL+GE L +EAPTG+G Sbjct: 2 LSNELKTKIHQSFKNLKENMNGFITRQAQNKMIAEISKTLSGEYKNSHNILCVEAPTGIG 61 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRY 118 KT +YL+ I IA+ +K L++S+ANVALQ+Q++ KD+P ++ D ++T GR RY Sbjct: 62 KTFAYLLGSIHIAKANKKKLIISSANVALQEQLFFKDIPQAQQYCCVDFEYTLIKGRSRY 121 Query: 119 VCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIA 178 VC RNL + L + P + ++ +K+ + T KW+G D Sbjct: 122 VCIRNLINICEDNKNDNPLFESMPLFDKPPEEYPLEQLSKMLYNYSTKKWNGEIDDLIPT 181 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA-VL 237 + +W++++ ++ +C +NC +Y++C FF R++I +A+V+VANH LV+A + + VL Sbjct: 182 TNHSIWQQIACNRFTCTVKNCEFYKDCAFFKTRQKITKADVIVANHDLVLADLSTGNTVL 241 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 PD + + DE HHL A ++ T+ + TK V+ + + + IP Sbjct: 242 PDVSKSIFIFDEAHHLNSKALSHFSLT---TSTEFIKTSVKQTKEVSETLCKISKQNIPN 298 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 + I + ++ + +L +L+ L N+Y+ + + ++ +L + + + Sbjct: 299 INIKQ-IDNYITDLIQLLEQLKFNENIYLFNQGVIDE--PIKQISRNILTLIEIIQTKFT 355 Query: 358 MLRGLAELFLND--LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 +L+ +L +++ + + + +F + + + P Sbjct: 356 LLKEFWSDYLKKTVINKSIHGPINNMAGQCEQHLLSIIALFS------SFLQIDEPNKIP 409 Query: 416 VTKWATRE--EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 ++W + + + + +S+ L+ L+W I+TSATL SL SF RL + Sbjct: 410 NSRWIKKSILTTSKRTNYLLNSAQTDISENLDHLIWSKASGAILTSATLTSLGSFERLNK 469 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 GL ++++ L SPF Q ++I +++ P+ +H E K+++ Sbjct: 470 QLGLLRN-ENQYLRLPSPF-MFNQVDLIIAKLKASPTQVY--EHTQETTLQLLKRLD--S 523 Query: 534 HLGMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQ 592 G LVLF S + MQ + + L L +QG+ P+ +++ H G+ S++ GL Sbjct: 524 DEGSLVLFTSNKQMQIVANLIDKKLNCTLFIQGEYPKKNILKKHINLRKQGKGSIIFGLD 583 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 SF+EG+DLKG+ L+ V I K+ F SP+ T +LKS NR PF SLP AS LIQ Sbjct: 584 SFSEGIDLKGNNLTHVIITKLRFSVPTSPIDRTLATYLKSQNRNPFMEISLPDASLKLIQ 643 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 GRLIR+ G++ I+D RL++K YGK LL+ALP + I Sbjct: 644 ACGRLIRTETDVGKITIFDNRLISKFYGKLLLNALPNYNI 683 >UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2JIT4_BURP8 Length = 757 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 179/767 (23%), Positives = 288/767 (37%), Gaps = 123/767 (16%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQR--------------------QMIADVAK---- 40 ++ A I A L QI + PRA Q M + Sbjct: 48 SSELADIFAADGLLARQIDGYRPRASQIEMARAVAAAMEASGRAMPEPAMFEAQKRPARR 107 Query: 41 ----------------------TLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 L G E L +EA TG GKT +YL+P + Sbjct: 108 LQHTSSASATDAPADQASSPEGALEGGE-NTLIVEAGTGTGKTYAYLVPAMLW----GGK 162 Query: 79 LVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 ++VST LQDQ++ +D+P ++ + + GR Y+C L A Sbjct: 163 VIVSTGTKHLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGR----- 217 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 +++E + + + + +W +++ + +CL + Sbjct: 218 ---------LPSRQETSYLQDIIRFAKITRTGDKAELASVPETAAVWSMVTSTRDNCLGQ 268 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPKNLLLVLDEGHHLP 254 C +Y++C ARRE Q+A++VV NH L A + + P ++ DE H LP Sbjct: 269 ECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTVIFDEAHQLP 328 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 + A + T L+L VA + R + +L Sbjct: 329 ETATLFFGETLSTTQF-----LELARDSVAEGLGHAR---------------DAVDWVKL 368 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 A+L A +E R ++G+LPD+ L + L L + Sbjct: 369 GAALERSARDVRLAFKEDSVRLSIGQLPDD----HPLFPALEAVETELDALASALAGQSE 424 Query: 375 GSHDIVRLHRLILQMNRALGMF-------EAQSKLWRLASLAQSSGAPVTKWATREEREG 427 + + L R ++ L + E + A+ +S +W Sbjct: 425 RAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDPNEKVRWIEVFSH-- 482 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 + H + V+ + + TSATL F+ GL + R + Sbjct: 483 --TVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLNSR---RSMT 537 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 L SPF++ QG + +PR +PS + + A + G+ +L + RA+ Sbjct: 538 LPSPFDYGTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIE----ASGGGVFMLCTTLRAV 593 Query: 548 QRFLDYVTD------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 R + D + LLVQGD R L++ R + ++LVG QSF EG+D++ Sbjct: 594 DRIASKLRDVIESRGWNMPLLVQGDASRTELLDRFR----SYGNAILVGSQSFWEGVDVR 649 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD LS V I K+ F P D PV+ + L PF V LP A L Q GRLIRS Sbjct: 650 GDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSE 709 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEGIVKKKE 706 G ++I D RL+ K YG+R+ +LP F + V E ++ + Sbjct: 710 TDRGVLMICDTRLVDKPYGRRIWQSLPPFKRTREMDVVREFFEERGQ 756 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 162/698 (23%), Positives = 283/698 (40%), Gaps = 36/698 (5%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 KAL E +P + R Q M+ +VA A E H IEAP G+GKT+ YLIP A++ Sbjct: 248 KALSELMPGYEKRDGQMMMMREVADAFANRE--HALIEAPPGIGKTIGYLIPAALFAKKS 305 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQ 134 +K +++ST + LQ QI +KDLP+++ + P + G+ Y+C + E Sbjct: 306 KKPVIISTYSTLLQQQILTKDLPIVQDLFPFPVTAAILKGQSHYLCLYKFEQVLHEEDDN 365 Query: 135 QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASC 194 D + Q GD+ + LW RL+ D S Sbjct: 366 YDA-------VLTKAQLLVWLTETNTGDVAELNL--------PSGGKLLWDRLAYDDDSY 410 Query: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLP 254 + + A++ +++V+ NH+L++ S P++ ++DE HH Sbjct: 411 KRSRSEHV-IGFYERAKQIAMRSDLVITNHSLLLTDEGSHKKRL-PESGTFIIDEAHHFE 468 Query: 255 DVARDALEMS---AEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL---AIPERLNAHC 308 A + L E+ R+ L+ + F+ ++P + E L Sbjct: 469 RAASEHLGKRATYIELHTKLSRIGTLKEQGLLKKMRQLFQRNSLPVDSFFELEEWLQHVQ 528 Query: 309 EELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE--VLEICQRLAKLTEMLRGLAELF 366 E +S+++ + P F + + + + +L ML L +LF Sbjct: 529 AESDAFFSSVHSFVKRRKPKEDLNRLVFKVNKESQDKSWSILTDGAERLCSMLTHLQQLF 588 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 S ++ + L M Q L L S W + + Sbjct: 589 EAQSSLMEKHLKGMKSKTVFLADEYQRSMKGLQHYCQTLQKLFFGSDDDEAVWIEIDAKG 648 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + + + + + L + +++TSATL SF + E GL + R + Sbjct: 649 AKNAVAIYAQPLEPGELLADQFFARKNSVVLTSATLTVEGSFQFMIERLGLSDF-FPRTM 707 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 ++SPF++ E+ +++IP+ + + I + A + + K+ +LVLF S Sbjct: 708 RIESPFSYDERMQVMIPKEMKSIQDTGQPEFIQDTARYIELMAKEKQPK-ILVLFTSHDM 766 Query: 547 MQRFLDYVTD----LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 +++ + + LL QG K +++L+G F EG+D G Sbjct: 767 LKKVHQELKHNMSASGIQLLAQGITGGSPG--KLMKTFKTSNQAILLGTNHFWEGVDFPG 824 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 D L+ V I ++ F D P+ + E + + PF+ SLP A Q +GRL+RS G Sbjct: 825 DELTTVMIVRLPFRSPDHPLHAAKCELARKKGKNPFQTVSLPEAVLTFRQGIGRLLRSAG 884 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 G ++I D+R+ T YG+ LDALP + + E Sbjct: 885 DKGTIIILDRRIKTAGYGRLFLDALPTTSVSEMTDSEL 922 >UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URD7_AKKM8 Length = 661 Score = 448 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 180/704 (25%), Positives = 288/704 (40%), Gaps = 67/704 (9%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 ++ A + A DF RA Q+ M VA+ L + L +EA TGVGK Sbjct: 12 VSAFEAYVHRAFAPDGLFSRA-RDFEYRAEQQSMALAVARALQVDAP--LLVEAGTGVGK 68 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 +L YL+P + A + + V+ST + LQ+Q+++KD+PLL+ + D GR Y+ Sbjct: 69 SLGYLLPAVKFALDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQNYL 128 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L A +D T E KR D DG Sbjct: 129 CHTRLRRAL----------AQMDSLFTQGEAAELKRIQ----DWALRTQDGTLSDMAFRP 174 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM----AAMESEA 235 +W + ++ +C R+C CP+ AR+ + EA+VVV NH L A +SE Sbjct: 175 SSKVWAMVCSEPHACSMRHCG--PSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEE 232 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 ++LDE H + ++A L + Y L + ++ Sbjct: 233 AGFVFPGDFVILDEAHMIENIAARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLN---- 288 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 L++ + + + L+ ++ G++ I Q Sbjct: 289 ------------NPSLFQRVQDVMDASGLFFQNARDDLGFAGSGKIV----RILQPEWSQ 332 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 + + L EL +E+ + + + M + +A L L + Sbjct: 333 DILSQPLMELIGELKTEREKQEENAAVKDELADMAARMEEAQA-----SLKVLMDMTEEG 387 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN-SFSRLQEM 474 WA R +G+ ++ + V D L L+ + I+TSATL + + S Sbjct: 388 HVYWAERSGPDGR-NMSVCSAPVEVGDILRERLFSAGRSAILTSATLGTGDADMSYFAGR 446 Query: 475 SGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKH 534 G R + + SPFN+ EQ ++++ R EP ++ AE+ + K+ ++ Sbjct: 447 VG---AERIRKLQIGSPFNYREQMRLIVARSMPEP----DQPEYAEVLPEWIKRYLAESR 499 Query: 535 LGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQP-RYRLVELHRKRVANGERSVLV 589 VLF S R M + + V + L VQG R+ ++E RK V SVL Sbjct: 500 GRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVD----SVLF 555 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 G SF G+D+ G+ LS V + ++ F D P+V + E ++ PF S+P A Sbjct: 556 GTDSFWTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAILK 615 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 L Q VGRLIR+ G VVI D R+ TK YG R L +LP +E Sbjct: 616 LRQGVGRLIRTRSDSGMVVILDPRVATKRYGMRFLKSLPEARLE 659 >UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B4ST01_STRM5 Length = 681 Score = 448 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 169/707 (23%), Positives = 277/707 (39%), Gaps = 63/707 (8%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+ + + AL + F+PR Q ++ +A L + L EA TG GK Sbjct: 1 MSDLVHASREALSDGGALASHLDAFVPRPAQLRLTEAIADALQQRD--LLLAEAGTGTGK 58 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 T +YL+P + ++ST ALQDQ+Y +DLP +++ + L+ GR Y+ Sbjct: 59 TFAYLVPVLL----SGLRTIISTGTRALQDQLYHRDLPRVRQALGVGLRSALLKGRANYL 114 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L ++ E+ + ++ ++ + + +A Sbjct: 115 CRYRLQQARGEPR--------------FSSPEQAAQFQRILAWSGRSEFGDIAELDGLAD 160 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL-- 237 D L +++ +CL +C ++ +C AR+ Q A+VVV NH L++A + + Sbjct: 161 DSPLLPMVTSTVDNCLGTDCPFWDDCFVVRARQRAQAADVVVVNHHLLLADLALKQDGFG 220 Query: 238 -PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P V+DE H LP++A + + Sbjct: 221 ELLPGAQAFVIDEAHQLPELAAQFFGEGFGMRPWQ-------------ELGRDCLAEARG 267 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L ++L + + +L + + +P+ AM ++ D + L L Sbjct: 268 VGGAQSALQEPVDQLQQALLALRSAMEG-LPSRGTQWRALAMPQVRDGFDTVMAGLVMLE 326 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 + L+ L E R + +++R LG E ++++ A Sbjct: 327 QALQPLREA------AAGLDACHARAREAVSRLSRWLGDDEPTLDFDT--DPSEANSAAD 378 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W R + VS L RS I TSATL F + G Sbjct: 379 VLWYELTPRG----FRCQRTPMDVSGPLREHRERSRAAWIFTSATLTVGGGFDHIATRLG 434 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 L + + SPFN EQ +P +P+ + + + Sbjct: 435 LDDP---HTLVQPSPFNWPEQALCYMPEGLPDPAARGFGTALIQSLRPVLQ----ASQGR 487 Query: 537 MLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAE 596 +LFAS RA++ + + D L VQG+ PR L++ R+ VL+G SF E Sbjct: 488 AFLLFASHRALREAAEALRDGPWPLFVQGEAPRATLLQRFRE----SGNGVLLGSASFRE 543 Query: 597 GLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGR 656 G+D+ G+ LS V I K+ F D PV E ++S PF + LP A L Q VGR Sbjct: 544 GVDVVGEALSVVMIDKLPFAAPDDPVYEARLEAIRSQGGNPFRDEQLPQAVIALKQGVGR 603 Query: 657 LIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ--PEVPEGI 701 LIRS G +V+ D RLL + YG+ LD+LP F + +V Sbjct: 604 LIRSESDRGVLVLCDPRLLNRGYGRVFLDSLPPFRRTRSLADVQAFF 650 >UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 RepID=C7I1U8_THIIN Length = 676 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 171/708 (24%), Positives = 282/708 (39%), Gaps = 82/708 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + + LQE++P + R QR++ VA +A + L EA TG GKTL+YL+P Sbjct: 24 DALFSPGSPLQEELPQWSVREGQRELAMAVAGAIA--DRAILMAEAGTGTGKTLAYLVPA 81 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTAL 127 + +++STA LQDQ+Y+KDLP ++ + + GR YVC L Sbjct: 82 LLH----GGRVIISTATRNLQDQLYNKDLPAARRALGAAVSTCVLKGRSNYVCLYRLQRA 137 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 A ++ + AK D GL +++ + + Sbjct: 138 AE----------WVHGRHAHAQLRRITQFAKSDARGDLSALSGLEENSALNF------LV 181 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---PDPKNLL 244 ++ +CL +C Y+ C ARRE ++VV+ NH L A + P Sbjct: 182 TSTTDNCLGADCPDYKACFVMKARREALASDVVIINHHLFFADLALRGEGVAELLPTADT 241 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 L+LDE H L ++ L +DL ++A ++ + Sbjct: 242 LILDEAHQLAEIGVQFLGARC-----GTAQVVDLSRDVLAGGLQHAKGL----------- 285 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 A + L + L L P + + +LP + + A+L Sbjct: 286 -ADWQTLSGALERAARDLRLAAPQNPGRLSQPQVLDLPGWDVALHDLQAQLAHT------ 338 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 + S + M+R + +A S Q+ P +WA Sbjct: 339 -------AEVLSAHVEAAAEFERLMDRCTALHQAFSSWQAAPDPDQTDAPPQVRWADV-- 389 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK---- 480 G HL + ++ L+ + I TSATL SF + GL + Sbjct: 390 --GSAHLRLQAAPLSIAPAFAALVAQRSQAWIFTSATLSVGGSFRHARAALGLTSEQGGC 447 Query: 481 --------AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 R + + SPF++ EQG++++P+ P+ + + +AA Sbjct: 448 APVEGGVAPRCRELRVASPFDYAEQGRLLVPQDLPLPNQPGHSESVGALAAQLATGNT-- 505 Query: 533 KHLGMLVLFASGRAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 G VL + RA + + L +L Q D+ + L+ R A+ ++VLVG Sbjct: 506 --GGTFVLTTTLRAAKIIAQTLRALLPGRAVLEQFDESKAALL----ARFASTSQAVLVG 559 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 QSF EG+DL GD L+ V I K+ F P D P+ + +++ R F S+P A+ +L Sbjct: 560 SQSFWEGVDLPGDRLTLVIIDKLPFAPPDDPLTAARLKQIEAEGRSGFADYSMPQAALSL 619 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 Q GRLIR+ G +V+ D+RL +G++LL +LP F Sbjct: 620 QQGAGRLIRTESDRGVLVVCDRRLTATGWGRQLLTSLPPFTRVSQTAE 667 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 447 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 162/748 (21%), Positives = 290/748 (38%), Gaps = 83/748 (11%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 ++ +P + RA Q +M V L +G L +EA TG GK+L+YL Sbjct: 249 DWIGRLYGPEGPFARSLPGYEFRAGQVRMAQAVTNVL--NQGGQLLVEAGTGTGKSLAYL 306 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-------------DLKFTAA 112 +P + A +T+VVST +ALQDQ+++KDLPLL++ + + T Sbjct: 307 LPAVLHAVARGETVVVSTDTLALQDQLFAKDLPLLRRALEAAAEHDPRLADAARFRATVL 366 Query: 113 FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 GR Y+C R L EP A L ++T GD Sbjct: 367 KGRSNYLCLRRW-FLRQREPFTSRAEALLAAKITA------WLAQTETGDRAELHLS--- 416 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE--CPFFVARREIQEAEVVVANHALVMAA 230 + W +++ + +CL C ++R C + AR + A +V+ NHAL+++ Sbjct: 417 -----NEEQLAWAQVAESEGACLPSRCLFHRRNQCFLYRARATAEGAHIVIVNHALLLSD 471 Query: 231 MESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCM--- 287 + +E+ + P L++DE HHL D A ++ L + Sbjct: 472 LLAESRVL-PSYRHLIIDEAHHLVDEATQQFGFQIAHEDMRELVRRVLGLDHLGRYTGVL 530 Query: 288 -------------------EQFRPKTIPPLAIPERLNAHCEELYELIASLNN---ILNLY 325 + + E L+ H E L+ L+A + + N Sbjct: 531 GELWSVLAQRPDGSARAVARELGQRLTDLWPRVETLHQHTEMLFHLLAEVAQRHPVENGG 590 Query: 326 MPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRL 385 + V E+ Q + + + + L + + L L Sbjct: 591 YDRQIRITGALRQETIWGTVEELGQTVTSHLRTVLSALQWVSHRLEDLPAAIRD-ELSEL 649 Query: 386 ILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLE 445 + +++ RL + S W T + L + + + V+ L+ Sbjct: 650 VTELDVLERRARELH--GRLQEILFSPRVERVYWLTWRAQP--LSVSLNMAPLDVAPLLQ 705 Query: 446 RLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRM 505 +L+ + +++TSATL SF +++ GL + + ++SPF++ + + Sbjct: 706 EMLFSRVDTLVLTSATLTVDRSFDYIRQQLGLADADE---LVVESPFDYASSTLLCLAED 762 Query: 506 RVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLML 561 EP ++ + E + LVLF S A+Q + +++ Sbjct: 763 MAEPGEPGYQRQVNEALLALLR----VTRGRALVLFTSHSALQAAYRAIKRPLEQEGILV 818 Query: 562 LVQG-DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDS 620 L Q D +LVE + R +V++G + EG+D+ G+ LS + I K+ F Sbjct: 819 LGQRLDGSPRQLVERLKAR----PATVVLGTNAVWEGVDVPGEALSVLVIAKLPFAVPSD 874 Query: 621 PVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYG 680 PV E PF+ ++P A Q GRLIRS +G V+ D+R+ T+ YG Sbjct: 875 PVFAARCESYS----DPFQEYAVPQAVLRFKQGFGRLIRSTRDYGVCVVLDRRVTTRRYG 930 Query: 681 KRLLDALPVFPIEQPEVPEGIVKKKEKT 708 + + +LP +++ V + ++ Sbjct: 931 QLFVQSLPPCTVKRVPVAQIPRLAQDWL 958 >UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A0KWC1_SHESA Length = 674 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 159/715 (22%), Positives = 284/715 (39%), Gaps = 82/715 (11%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+ A+ + A L + I F R Q +M +++ +A + + IEA TGVGK Sbjct: 35 MSRLASEVLRAFASDGVLAKHIQGFSARQSQVEMAQIISEAIASK--GNALIEAGTGVGK 92 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 T +YLIP I K ++VST + LQ+Q++ KDLP L ++ K GR Y+ Sbjct: 93 TFAYLIPAIL----SGKQVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYL 148 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L + ++ + + G GL +A Sbjct: 149 CQHRLDKQMQEASHIE-----------ARLLDDLLKINQWAGMSKDGDIGGLTS---VAE 194 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAV 236 + + + K +CL + C +Y C AR +A+++V NH L A + Sbjct: 195 NSPALPLVVSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHHLFFADSVLKDTGFA 254 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P +++ DE H LPD+ + ++ + +++ Sbjct: 255 ELLPDPDVVIFDEAHLLPDICVSYFGQQSS-------------SRTIDDYLQKLLQIYQT 301 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L+ ++ C+ ++ +N L + E++ R +G + L Sbjct: 302 ELSDTGQIAQFCQRCLTKLSDWHNAL----FSSGESDWRLQLGNKSIAL-----ASWDLL 352 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 L L +L L + DI A+ + E KL + + A Sbjct: 353 AELTALQKLLLVHVGRSELLDDI------------AVKLTELNHKLNQFFNCDNPQAAYS 400 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 ++ G + I ++ + ++L + I TSATL+ S + G Sbjct: 401 VEF-------GSRFVMLRMSPINIARECQQLFVANT-SWIFTSATLQVNRSLDHFAQELG 452 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 + + + LDSPF++ Q +PR + N++Q + ++ K +E+ + Sbjct: 453 ISD---AKAHILDSPFDYPRQALFCVPRQLGNVT--NQQQALKQLVDVCVKAIEAAQ-GR 506 Query: 537 MLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 +LF S + +++ + + LLVQG + L+ R +VL+G SF Sbjct: 507 TFILFTSHKMLEQTALALRTRTQYPLLVQGQAGKQSLLTKFR----QLGNAVLLGTSSFW 562 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+D++G LLS V I K+ F D P+ + + PF SLP A L Q VG Sbjct: 563 EGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVG 622 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 RLIR G +++ D R++ + YG+ L++LP + + + + + Sbjct: 623 RLIRDEKDCGVLILCDNRIVNRAYGQAFLNSLPPMSRTRD-----LDQALQFLRK 672 >UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterineae RepID=C5VAL7_9CORY Length = 681 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 184/725 (25%), Positives = 287/725 (39%), Gaps = 66/725 (9%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M T L A + A A R Q M VA L E RHLA++A TG GK Sbjct: 1 MTATELLAAAVTALGGA---------TRPGQVAMTEAVATALESE--RHLAVQAGTGTGK 49 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGR 115 +L+YL+P +A A+E + T++VSTA +ALQ Q+ +DLP L + + F GR Sbjct: 50 SLAYLVPAVAHAQETESTVIVSTATIALQRQLVDRDLPRLAESLEPLLDHKPSFAIMKGR 109 Query: 116 GRYVCPRNLTALASTEPTQQ-----DLLAFLDDELTPNNQEEQKRCAKLKG--DLDTYKW 168 Y+C + + E D A + E + + Sbjct: 110 QNYLCQNKVAQATALEADDPNSGDADGNAGGAQTALVDESELSWLGRHMARIYEWANETE 169 Query: 169 DGLRDHTDIAIDDDLWRRLSTDKASCLNR-NCYYYRECPFFVARREIQEAEVVVANHALV 227 G RD + + D WR++S C+ C + C +ARR+ ++ +VVV NHAL+ Sbjct: 170 TGDRDSLEPGVPDLAWRQVSVGAKECIGANRCPFGDSCFAELARRKARDVDVVVTNHALL 229 Query: 228 MAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPW---YRLQLDLFTKLVA 284 + + P + ++++DE H L D +TA R Sbjct: 230 AVDAMLD-INVLPDHDVVIIDEAHELDDRITSMATTEIGVTALNMSARRAGKLGAEGRDE 288 Query: 285 TCMEQFRPKTIPPLAI-PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 ++ R ++I P RL E L + +L + L A A E P+ Sbjct: 289 KLIDVAREWEQVMMSIDPGRLTTLPEVLRPTLVALQDGLWQLQQTIGRAPEGEAANE-PE 347 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW 403 E LTE +A + + + S D Sbjct: 348 RHAERLSLANHLTEQHDAVARILSAFPAHPSLSPDDATSPEPA----------------- 390 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 + WA +ER G + + VSD L L+ +++TSATL Sbjct: 391 --TPPGSADAPEDVVWAVVDERRGTM---LKVAPLSVSDLLRSRLFDH-NTVVLTSATLT 444 Query: 464 SLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMA 522 +F+ + GL + D + +PF+ + G + +PR P D E+ ++EM Sbjct: 445 IGGNFNAMAASWGLPAGSWDH-LDAGTPFDPAKSGILYVPRHVPFPGRDGLHEKTLSEMY 503 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVA 581 L LF+S RA ++ + + L +L QGD LV+ K+ Sbjct: 504 ELIM-----AAGGRTLGLFSSRRAAEQATESLRRRLPFDVLCQGDDSMGALVDRFAKQ-- 556 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 E + L G + +G+D+ G S V + KI FP D P++ E + R F Sbjct: 557 --ENTCLFGTLTLWQGVDVPGKSCSLVIMDKIPFPRPDDPLLQARKEAADAAGRNGFMEV 614 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEG 700 + A+ + Q GRL+R G V I DKRL+ K YG LL++LP + P+V G Sbjct: 615 AATHAALLMAQGAGRLLRHTTDRGVVAIMDKRLIEKRYGGFLLNSLPPFWRTTDPKVVTG 674 Query: 701 IVKKK 705 +K+ Sbjct: 675 ALKRL 679 >UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4_ACISJ Length = 758 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 217/729 (29%), Positives = 337/729 (46%), Gaps = 44/729 (6%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEE------------GRHLA 51 + AQ ++A+ + F R QR+M VA+T + + Sbjct: 32 STEWAAQALQSFEAVVQSTAGFRVREGQRRMAEQVAQTFSQAQLGKLEDDDALPQRAIAV 91 Query: 52 IEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLK-KIIPDLKFT 110 ++A TGVGK+L+Y +P IA+A +++STA VALQ+Q+ KDLP L ++ +F Sbjct: 92 VQAGTGVGKSLAYSVPAIAMALARGTRVLISTATVALQEQLVHKDLPALAARMEQPFQFA 151 Query: 111 AAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKR--------------C 156 A GRGRYVC L LA L D+ ++E ++R Sbjct: 152 LAKGRGRYVCKLKLERLAGGGAAGPGGDGDLPDDDLFADEEAEQRGKRPRHESEARMKFY 211 Query: 157 AKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQE 216 A + L T +WDG RD + + W ++ + +SC ++C + +C ++ R+++ Sbjct: 212 ASMADALATSEWDGDRDTLATPPEPEAWSPVAAEASSCTGKHCPVFNQCTYYERRKQLVA 271 Query: 217 AEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL 276 A+V+VANH L+++++ + +LP+ N LLV+DE HHLP A D A+++ + +L Sbjct: 272 AQVIVANHDLLLSSLGAR-LLPELDNCLLVIDEAHHLPATALDQFACEADLSRLTWIDRL 330 Query: 277 DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL-NNILNLYMPAGQE---- 331 + +E IP A RL A ++ L+ + L +P ++ Sbjct: 331 ASRALRIGQLVEVEEIADIPNHA--ARLRAALQDAARLVMDVYGEQLRAPVPGRRQFASS 388 Query: 332 --AEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH--DIVRLHRLIL 387 R A G LP+ ++E + A E L + + RL +L Sbjct: 389 LPTRARVAGGVLPEALVEPFSQAAHHAEGFLNALRAISKALRSEMRDKPDEARRLSQLYA 448 Query: 388 QMNRALGMFEAQSKLWRLASLAQSSGA-PVTKWATREEREGQLHLWFHCVGIRVSDQLER 446 Q+ EA +L GA P KW T E + + H + + L Sbjct: 449 QIGVLAPRLEAVHAAAQLLLQDAPEGAVPAAKWFTLEVEGDFIVVRAHASPVLPGNTLRN 508 Query: 447 LLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMR 506 LW ++ ++TSATL S F SGL +A+ SPF++ QG +V R Sbjct: 509 HLWSAVRGAVLTSATLTSCGQFDFFLRESGLFGDEAVTTLAVPSPFDYALQGTLVATETR 568 Query: 507 VEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQG 565 EP + + AEM + + G LVLF S M++ +D + +R +LVQ Sbjct: 569 AEP--RDAQAFTAEMVDALLSDLALVE-AGALVLFTSREQMRQAVDMLPTAMRSAVLVQN 625 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 PR +L+ HR+RVA G+ S++ G+QSF EGLDL G L + I K+ F P D PV Sbjct: 626 TLPRPQLLARHRERVAEGQPSIIFGMQSFGEGLDLPGRLCESLFITKLPFAPPDDPVGEA 685 Query: 626 EGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLD 685 EWL+ R PF +P+ + L Q VGR IR+ V YDKRL+ YG+RLL Sbjct: 686 RAEWLRGAGRDPFSELVVPATAIRLAQWVGRAIRTEEDRAHVYCYDKRLVRTGYGQRLLQ 745 Query: 686 ALPVFPIEQ 694 LP F + + Sbjct: 746 GLPPFALAR 754 >UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1E9_NATTJ Length = 636 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 159/695 (22%), Positives = 285/695 (41%), Gaps = 82/695 (11%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 ++ ++ ++ LQ I F R Q M V K L ++G H +EA TG GK+L+Y Sbjct: 2 SSQWEELDQIWEDLQHHIDKFETREGQIDMSLGVLKAL--QDGGHFVVEAGTGTGKSLAY 59 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRN 123 L+P + +A++E +V+STA +ALQ+Q+ KD+PL++KII L+ GR Y+C + Sbjct: 60 LLPAVQLAQDE-FRMVISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQK 118 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 + + N +++ + + +T D ++ ++ Sbjct: 119 FNQHFG--------------QTSFVNSIQERELIEWVNETETG------DRNELQTMPEI 158 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-----ESEAVLP 238 W ++ + SCL C +Y EC R+ + AE++V NH L + + ++ Sbjct: 159 WEKVCSQSESCLAMRCQFYSECFVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSI 218 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL 298 P ++ DE HH+PD A +L + + KL + K + Sbjct: 219 FPDYEGVIFDEAHHIPDTATKSLGREVKYSRVI---------KLFKEVTSYLKQKFQAQV 269 Query: 299 AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 + + A + + ++ +E+++ + + E ++L+KL + Sbjct: 270 NLVQEAEASAVKAFNKLSDF-----------RESDYLLRELDSFISLKEFRKKLSKLAQH 318 Query: 359 LRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTK 418 + A L E L + + L + Sbjct: 319 VEECA------LEEMDRPEQPRMLASRLNK------------TKLDLDLILDLEEEDYIS 360 Query: 419 WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 W + + + V QL L+ ++ II+TSATL F+ + GL Sbjct: 361 WV----NQQSSDISLSTNPVFVHKQLREFLFDNVDRIIMTSATLSINGKFAYFKNRVGLS 416 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + + ++SPFN+ EQ I IP+ EP + +A+ L Sbjct: 417 QD--AQTYQIESPFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIID----AAGGRTL 470 Query: 539 VLFASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 VLF S + + + D + QG P+ +++ N SVL+ SF EG Sbjct: 471 VLFTSYSTLNSIYNQLKDKVPYEIYCQGIHPKNKILSWF----QNDASSVLMATNSFREG 526 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 +D+ G L V + K+ F D+P++ + E L+ + F LP A + Q GRL Sbjct: 527 VDVPGSSLQVVIMDKLPFAVPDNPLIKAKIEKLQQEGQNSFMNYQLPEAVLAVKQGFGRL 586 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 IR + G + D R+ TK+YG+ +++LP P+ Sbjct: 587 IRHNNDCGIFALLDPRVFTKSYGRHFINSLPNAPL 621 >UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EML2_ACIF5 Length = 641 Score = 444 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 172/687 (25%), Positives = 275/687 (40%), Gaps = 79/687 (11%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 + AL +P F R Q+ M A VA TL +G IEA TG GKT +YL+P + Sbjct: 14 LLGETGALARALPQFRAREQQQAMAAQVAHTL--RDGGVALIEAGTGTGKTFAYLLPAML 71 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALAS 129 + ++VST + ALQDQI KD+PLL + + L+ + GR Y+C L ++ Sbjct: 72 ----SGRKVLVSTGSKALQDQILEKDIPLLLRAMGKPLRVSRLKGRANYLCRHRLQRFSA 127 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 + P + +GD+ + D +W +++ Sbjct: 128 EGVAP--------ALVAPLARVADWAGRTREGDVSELT--------SVPEDSPIWPLVTS 171 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPKNLLLV 246 + +C C Y C ARR+ QEAE++V NH L+ + + + P+ +V Sbjct: 172 TRDNCPGSECPEYGRCHVIEARRQAQEAEILVVNHHLLFSDLALKANGMGDLLPRVDAMV 231 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 LDE H + D+A W R +T+ E L A Sbjct: 232 LDEAHQVLDLAGRYFGQHLSSHQLW-------------DWGRDSRAETLAEAGDDEGLLA 278 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 A + + + R + PD A+L + + L + Sbjct: 279 AA-------AQVETQTTAWRTVLGPGDERGSWALNPDSAE--GSAFARLRQAVAELGQAL 329 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 + G ++L A + + W ++ R Sbjct: 330 NAAAARGKGLEQCAARGVVLLATVDF---------------FAAHNAPNMVFWQEKKSR- 373 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + H + V+ L+R L + +I+TSATLR +SF+ + GL + + Sbjct: 374 ---TVQLHATPLDVAAPLQRHLLEPVESVILTSATLRVGDSFASTERALGLTAVS---TL 427 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 SPF++ Q + +P + EP + + + AA + LF S RA Sbjct: 428 TAASPFDYARQSLLYLPPLMPEPGHPSYTRACLDAAAPVIE----ASGGRTFFLFTSHRA 483 Query: 547 MQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 +Q + L +LVQG PR RL++ R + +VL+G SF EG+D++G+ L Sbjct: 484 LQEAAVSLPQRLSFPILVQGSMPRPRLLDRFR----SLGNAVLLGAASFWEGVDVQGEAL 539 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 S V I K+ F P++ E ++ PF +P A L Q VGRLIRS G Sbjct: 540 SCVIIDKLPFANPSDPILRARTEQCQAEGGEPFRELQIPQAVIALRQGVGRLIRSEMDRG 599 Query: 666 EVVIYDKRLLTKNYGKRLLDALPVFPI 692 +++ D RL +K YG+ LD+LP Sbjct: 600 VLMLCDPRLRSKGYGRIFLDSLPPMRR 626 >UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G59_THICR Length = 636 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 175/697 (25%), Positives = 271/697 (38%), Gaps = 80/697 (11%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+L + I L + D+ R Q +M VA+ + +E + L EA TG GK Sbjct: 1 MSLKIQI-QSILGKDGQLSQNTSDYEVRHAQVEMAETVAEVI--DEDQTLLAEAGTGTGK 57 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYV 119 T +YLIP + K ++VSTA LQDQ+ KD+PLL I GR Y+ Sbjct: 58 TFAYLIPALL----SGKKVIVSTATKTLQDQLLRKDIPLLMDICNAKGTAKILKGRENYI 113 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD-IA 178 CP+ L + E + E R L D G + + Sbjct: 114 CPQRLEIAETAEQNTK----------------EVWRKLSLIHDWQEKTLIGDKSELTTLD 157 Query: 179 IDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL- 237 +D +W R+ C C C + +++ +AE+++ NH L A + Sbjct: 158 ENDPIWSRVCARMEFCQANECTGDNGCFYPGVKQQATDAEILIVNHHLFCADLALREQGF 217 Query: 238 --PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 P+ + + DE H LPD+A L S R QLD + V ++ P+TI Sbjct: 218 GEILPEADIYIFDEAHQLPDIAAQFLGFSVS------RFQLDELVRDVRLAYKKESPETI 271 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 EL + ++ + + ++ A + E R+ + + K Sbjct: 272 --------------ELSDQAKAVEDKIRIFNEALGKWEKRWTWESFSEA-----KTGHKT 312 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 E LR L + I +L+ + + FE Q + W ++S Sbjct: 313 LEHLRNQLSLLAEVI------KPITDRGKLLSALYKRTQEFEKQIETW-----LKASSEN 361 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 +W Q + + V+ R I TSATL SF Sbjct: 362 QIRWVE----SSQARFKLNLTPLSVAAPFSRQRDALGGAWIFTSATLSVNQSFDYFAHRL 417 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 GL+ R +SPF++ +Q I P +P + ++ + Sbjct: 418 GLE---SARTHQWESPFDYEQQAVIYHPIGLPDPKHPD----YIKICLRAAWPLLLASQG 470 Query: 536 GMLVLFASGRAMQRFLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 +LF S +A+Q + L+VQGD P+ L+ R E ++L+G SF Sbjct: 471 RAFLLFTSHKALQEAKVILSQHWEGTLMVQGDGPKTTLL----ARFKETENAILLGTSSF 526 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+KGD L V I +I F P D PVV +LK F +P A+ L Q Sbjct: 527 WEGVDVKGDALKLVLIDRIPFIPPDDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGA 586 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 GRLIR G +++ D RL K YGK + ++ P F Sbjct: 587 GRLIRDSSDKGVLMLCDPRLTQKPYGKIITNSFPSFK 623 >UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRY2_9GAMM Length = 646 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 177/688 (25%), Positives = 270/688 (39%), Gaps = 74/688 (10%) Query: 13 AWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIA 72 L+ +P F R Q++M A VA LA EG +EA TG GK+ +YL+P + Sbjct: 12 GADSPLRRILPHFHVRRQQQEMAAQVAGWLA--EGGVGLVEAGTGTGKSFAYLLPALL-- 67 Query: 73 REEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA-AFGRGRYVCPRNLTALASTE 131 ++ +++STA+ ALQDQI KD+P+L + + GR Y+CP L + Sbjct: 68 --CERKVLISTASRALQDQILDKDIPVLAQAWSSPRRVVRLKGRSNYLCPFRLQRALAEG 125 Query: 132 PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK 191 + L +GD+ + +W +++ + Sbjct: 126 VAPRLARDLL--------VVADWAGRTGEGDIAELS--------ALPESSPVWPLVTSTR 169 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESE---AVLPDPKNLLLVLD 248 +CL +C + CP AR+ EA+VVV NH L++A + P+ +++D Sbjct: 170 DNCLGSDCPEFARCPVIAARKRALEADVVVVNHHLLLADLALRVESRGDLLPRVDAVIID 229 Query: 249 EGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHC 308 E H L D+A + + + L +P RL H Sbjct: 230 EAHQLADLAGQYFGQHLSSHQLLEWARD-------SRQALLAAARDDAELGLPARLEQHI 282 Query: 309 EELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLN 368 E L + + F + L + ++ A+L L+ L E Sbjct: 283 EHWLAQGQQLPGGESRWEWPS------FPVQVLTASLRQVASEAAQLESTLQSLREF--- 333 Query: 369 DLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQ 428 S ++ + Q+ L F L S +W R R Sbjct: 334 -------SKELEQCAGRGEQLTGLLEFF-----------LKPESEPSAVRWLERRGRG-- 373 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE-KAGDRFVA 487 L H I + L L+ I+ SATLR F L+ GL E + + Sbjct: 374 --LLLHASPIDLGPLLRGELFARNATTILVSATLRVGGDFGALEARLGLVEGEPSPQHFV 431 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 DSPF++ Q + +P EP+ E A + LF S RA+ Sbjct: 432 ADSPFDYTCQALLYLPPQMPEPASPQFTAACIEAAIPVIE----ASGGRCFFLFTSHRAL 487 Query: 548 QRFL-DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + + L +LVQG PR RL++ R+ +VL+G SF EG+D++G+ LS Sbjct: 488 REAAVELPQRLDFPILVQGSMPRARLLDAFRRA----GNAVLLGAASFWEGVDVQGETLS 543 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I K+ F PV+ ++ PF LP A L Q VGRLIRS G Sbjct: 544 CVIIDKLPFANPGDPVLRAHHRHCAAMGGDPFRDLQLPQAVIALRQGVGRLIRSESDRGV 603 Query: 667 VVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 + I D RLL K YG+ L +LP P+ Q Sbjct: 604 LTICDPRLLNKGYGRIFLRSLPPIPVVQ 631 >UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIX1_9BACT Length = 644 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 172/678 (25%), Positives = 286/678 (42%), Gaps = 69/678 (10%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR--EEQKTLVV 81 DF R Q M + V L+ EG +L +EAPTGVGK+++YL+P + R E+ K +++ Sbjct: 15 DFERRPQQETMASKVYYALS--EGLNLCVEAPTGVGKSIAYLLPAVKWHRNTEQTKPIII 72 Query: 82 STANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 +T LQ+Q+ KD+P ++ ++ + GRG Y+C R + A A+ P + Sbjct: 73 TTHTKHLQEQLLKKDVPAVQLMLGEDFNAVIGMGRGNYICMRRMNAAAAGSPDFLPDESM 132 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + + + +G + A+D+ W ++ ++ +CLN+ C Sbjct: 133 IPEVFRIKS-------------WSATSENGCKTELPFAVDNGAWGTVNAEEGNCLNQRCP 179 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAME------SEAVLPDPKNLLLVLDEGHHLP 254 +++ C F +RR + A+V++ NHAL A + E P +++DE H + Sbjct: 180 HFKPCFFQKSRRSLYGADVIIVNHALFFADLAIKAETGDEQAGILPSASAIIVDECHTVE 239 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 DVA L + Y+ + + + R ++++ Sbjct: 240 DVAAVHLGIRLSAGTFLYQ---------LRRIYNKRSKRGAISTVSDNRGRHLAAKMHDE 290 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 + L+ ++P + HR +P+ L E L L L E+ Sbjct: 291 VRDFFQSLHAWLPD-ENKTHRIHEPVVPE---------NPLAEGLTQLCGLLELYADEEE 340 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFH 434 G+ + +R + R L + ++ S R +S W + + HL H Sbjct: 341 GNPEKETEYRSLS--RRLLKLTDSLSFFLR------ASSEEHVFWFEKSTK----HLSMH 388 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNH 494 I V+ L LL+RS ++ TSATL S + G+ E + LDSPF+ Sbjct: 389 AAAIDVAPILNDLLFRSKTPVVTTSATLAVSEKLSYYRSRVGMSESLD---MILDSPFDF 445 Query: 495 CEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY- 553 Q K+ + P ++ E+ +F G VLF S M+R D Sbjct: 446 KNQMKVFAAQTLPSPKENDYEKEALTWLRYFIHM----STGGAFVLFTSFSQMKRIADAV 501 Query: 554 ---VTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 + ++ L LLVQG+ L+ + SVL G +F G+D+ G+ L V I Sbjct: 502 RPFMNEMGLKLLVQGEAASSALL---LQAFKEDNNSVLFGTDTFWTGVDVPGESLRNVII 558 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 +I F D P++ E L+ F S+P A L Q +GRLIRS G VV+ Sbjct: 559 MRIPFAVPDHPLIAARCEHLEKTGGRAFFDFSVPEAQLKLRQGIGRLIRSAKDRGIVVLM 618 Query: 671 DKRLLTKNYGKRLLDALP 688 D R+ NYG + L A+P Sbjct: 619 DSRVSNTNYGAKFLRAMP 636 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 153/715 (21%), Positives = 288/715 (40%), Gaps = 38/715 (5%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 T K + A P + R+ Q +M+ V + + + G+H IEA TG+GK+L Sbjct: 243 TDEAKMALFKKAGA-----PLY-ARSGQFEMMNLVFQAM--KSGKHALIEAGTGIGKSLG 294 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPR 122 Y +P I A++ + +V+ST LQ Q++ KD+PLL K+ +K + GR Y+ Sbjct: 295 YFLPAIYQAKQAELPVVISTYTNLLQAQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLF 354 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L TQ D+ + + GD+D + Sbjct: 355 KFEQLLQEVDTQYDV-------VVTKLKLLVWLTETTTGDIDEVNLSSGGEL-------- 399 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKN 242 W R+ ++ + + ++ + A++V+ NHAL++ S PK Sbjct: 400 FWNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIVNHALLLNDHFSGRETL-PKY 458 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 V+DE HH D AR Y L+ L + P Sbjct: 459 AFAVIDEAHHFADSARMQGSFVLSYRKIKY--FLNQLGSLEKYSLLTRLAMAFPEADSLY 516 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE---VLEICQRLAKLTEML 359 L+ +L + + +L + + ++ + E ++ ++ K+ +L Sbjct: 517 DLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDAWNDQVYYAAEKVLYLL 576 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + + L + + + + + Q+ + +L + +T + Sbjct: 577 KESEKNMETLLEQGKREENELGEAESAFLEEMYAFLLDWQNMVKQLEQMLHKKSPILTIY 636 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 ++ + V + V L + + +I+TSATL F L++ GL+E Sbjct: 637 LQADKNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLEE 696 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 + + SPF++ E +++IP E++ +E+A + + + K + MLV Sbjct: 697 EQIMEK-RIPSPFDYKENARVMIPDDMPPIKDTPIERYTSELAKYI-RHIAVKTNGRMLV 754 Query: 540 LFASGRAMQRFLDYVTDLR----LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 LF + +Q+ ++ + + +LL QG K+ ++++L+G SF Sbjct: 755 LFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAA--RLTKQFQMFDKAILLGTTSFW 812 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+D+ G+ LS + I ++ F P+D P + K F+ SLP A Q G Sbjct: 813 EGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQTYSLPEAVLRFKQGFG 872 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 RLIR G V ++D R+ T +GK L+++P PI + + + + + E K Sbjct: 873 RLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQADLLEEVSEFFKE 927 >UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVG8_DICNV Length = 645 Score = 434 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 162/691 (23%), Positives = 268/691 (38%), Gaps = 70/691 (10%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 + AL + + R Q + +A+ + E L EA TG+GKT +YL P Sbjct: 5 DSFFSEQGALSSALKGYQVRKEQVHLAETIARQI--ERKSVLCAEAGTGIGKTFAYLFPL 62 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCPRNLTAL 127 + A++ ++STA LQ+QI+ D+P ++KI+ + K GR Y+C L Sbjct: 63 LLSAKK----ALISTATKTLQEQIFYHDIPFVQKILGNSRKIALLKGRRNYLCYERYEHL 118 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 A P ++++ +L D DG DI + D+ R + Sbjct: 119 AHKPPQNA----------------QEQKYRQLIDDFAVRSKDGDLAQLDIPENHDILRAV 162 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL---PDPKNLL 244 S CLN +C ++ +C AR++ ++A+++V NH L++A + + P+ Sbjct: 163 SCTAEQCLNADCPFFAQCFVQKARQKAKDADLIVVNHYLLLADLVLKNDGFAEILPEIET 222 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 ++DE HHLP + R ++ L+ A+ E Sbjct: 223 FIIDEAHHLPTITRHFSGITLSQRQCHLWLK-------------------EFDEAVIEHA 263 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 L I + N++ + + Q + R + + +A + L L Sbjct: 264 PDAL-TLRHAIKTAQNVMQQFPSSLQIYDERILEMPDLQAHHDFWEIIAAWQQALMKLLS 322 Query: 365 LFLNDLSEKTGSHDIVR-LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 L H R L + ++ L + +A S P KW Sbjct: 323 ALQPQLPRAAVLHTFERRLETALNSLDEFLALKDANES---------SPETPEAKWVEVR 373 Query: 424 EREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 + HL + V + + Q + RS SATL SF+ GL A Sbjct: 374 AQ----HLVLNRVPVNAALQFGTWIERSDAAWCFLSATLTINQSFTHFCHELGLN--ASV 427 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 + SPF++ +Q + P P+ + + + +LF S Sbjct: 428 ETLYCASPFDYPKQALMYQPPQLPNPNHPQYTESFIAAVLPILR----RSQGRSFLLFTS 483 Query: 544 GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 RA++ + + L VQG P+ +L+ ++L+ SF EG+D++G Sbjct: 484 YRALKIAEKLLANEEFALFVQGSAPKTKLL----ADFCQTPNALLLATASFWEGVDVRGK 539 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 L V I K+ F D PV L+ PF +LP A +L Q VGRLIR Sbjct: 540 QLVCVMIDKLPFAAPDDPVSRERHRLLEEQGLSPFMYDTLPQAVISLKQGVGRLIRDQKD 599 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 +G +VI D RL K+YGK L++LP Sbjct: 600 YGVLVIGDPRLRQKSYGKIFLESLPRMTRTS 630 >UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB00_9BURK Length = 667 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 181/717 (25%), Positives = 286/717 (39%), Gaps = 78/717 (10%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 A++ + L + +++PR Q+ M A VA + ++G L +EA TGVGKT +YL+P Sbjct: 9 VAEVFSPRGLLAGAVAEYLPRKGQQDMAAAVAGNI--QDGGVLVVEAGTGVGKTFAYLVP 66 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + + +++STA ALQDQ++++D+P L +I+ ++ GR YVC L Sbjct: 67 ALL----SGQKVLLSTATKALQDQLFTRDIPELLEILKIPVRVALLKGRSSYVCLHRLAN 122 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + Q L Q E A GD+ + L Sbjct: 123 ARHSGILQSAA------PLRLLGQVESWVTATRTGDVSEVP--------ALEESQQLLPL 168 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNL 243 +++ + +C C Y+EC + ARR+ A+VVV NH L A ES P Sbjct: 169 VTSTRENCTTSKCPRYQECHLYKARRDAMAADVVVINHHLFFADSNVRESGVAELLPTVN 228 Query: 244 LLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPER 303 +V DE H L D+ L L+L +V C++ R Sbjct: 229 AVVFDEAHQLNDIGVQFLG-----RQWSTLQLLNLGRDVVFVCLQWARGM---------- 273 Query: 304 LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLA 363 A+ + L E + + L R L E L +L +L+ A Sbjct: 274 --ANWQLLVEQLEMAVVDMQLVCQESAANTPRLPWQALVPEGLSPGLWERRLRRLLQAHA 331 Query: 364 ELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATRE 423 L ++ L + L A + + +W Sbjct: 332 TLLQALQGVADAHPELAALAERASVLKDHLDR------------AALPAEDGLIRWM--- 376 Query: 424 EREGQLHLWFHCVGIRVSDQLERLL-----WRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 + L F + +SD + + S TSATL + + +GL Sbjct: 377 --DNGTRLRFVESPMDISDAMRSKVTGALEAGSRVSWTFTSATLGPGSDLAWFVNSAGLH 434 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 G + ++SPFN+ Q + +P PS N +A +AA + + + Sbjct: 435 ---GANVLKVESPFNYEHQAALYVPGAIPAPSHPNHGTRVAALAAEGAEIL----GGRTM 487 Query: 539 VLFASGRAMQRFLDYVTDLRLM-----LLVQGDQPRYRLVELHRKRVANGERSVLVGLQS 593 VL + RAM+ + + L +LVQG+ + L+E ++R G VLV S Sbjct: 488 VLTTTLRAMRLIGETIRKLLPPHLDMAVLVQGESSKRELLERFQQR--EGLGCVLVASAS 545 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+D+ G L + I KI F P D P++ + + F LP A+ L Q Sbjct: 546 FWEGVDIPGRSLLLLLIDKIPFAPPDDPLLQARCKQVDEAGGSSFNEVQLPMAAVALRQG 605 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 VGRLIR G +V+ D RL + YG++LL ALPV I + + + + K TKS Sbjct: 606 VGRLIRRESDRGVLVVCDVRLRSMGYGRKLLSALPVMRIVKDDT-QFQAELKALTKS 661 >UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepID=A9GFB8_SORC5 Length = 697 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 168/722 (23%), Positives = 264/722 (36%), Gaps = 88/722 (12%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 A + + + R Q M + V + LA E R L EA TG GKTL+YL Sbjct: 4 DRAASLLGPSGPFARGLDGYEDRQGQVAMASAVERALA--EDRILLCEAGTGTGKTLAYL 61 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 +P I + +VVSTA AL+DQIY+KDLPL+ + + D + G G Y+C R Sbjct: 62 VPAIL----SGRKVVVSTATKALEDQIYTKDLPLVAEHLRLDPRAALVKGLGNYLCLRRF 117 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + L ++ + E GD+ +A D LW Sbjct: 118 SELRTSPGAGAGIAG------RSLPLIEAWAQETEMGDVAEL--------AHLAEGDPLW 163 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP------ 238 R +++ + L +C Y+ C +R+ + A ++V NH L A + + Sbjct: 164 REVASSSETRLGASCEYFERCFVTRMKRDSEAARLLVVNHHLFFADLALKMAGARRGFAG 223 Query: 239 ---DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 P ++ DE H L D+A + L+ + + ++ + Sbjct: 224 AGALPPYDAVIFDEAHQLEDIATGFFGVRVSRARVDSMLRDADRAFIASGLADRILGRGE 283 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 AI + + L++ +ASL EA A E+L+ Sbjct: 284 GT-AITAVVRESADALFDRLASL--GGAAGGGDRGEARSPLARDAWSGELLDA------- 333 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 + L + + + A+ Sbjct: 334 -------YHRLDDHLEALAAYASANAISEAVQLVGNRAAQLRDD------AARIVDPATN 380 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS----FSRL 471 W R + F + + D L ++ I +++TSATL + S F L Sbjct: 381 QVTWVEVRGR----AVSFGASPVDLGDMLREHVFERIGAVVLTSATLTTGGSAGAGFRFL 436 Query: 472 QEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 + GL E + + SPF++ + PR E + + A+ AA Sbjct: 437 RSRMGLDEDVSVPVDELEVPSPFDYPTAALLYTPRDLPEATDAAFVERAADRAAELI--- 493 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVT-----------------DLRLMLLVQGDQPRYRL 572 G +L S RAM + + LLVQGD P+ L Sbjct: 494 -GITGGGAFLLCTSIRAMNALAAALRVRLGRAAAVARADGGAPGRQAPLLVQGDAPKGAL 552 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 + +R +VLV SF EG+D+ G+ L V I K+ F PVV ++ Sbjct: 553 L----RRFRAERHAVLVATMSFWEGVDVPGEALRLVIIEKLPFAVPTDPVVAARCTAIEQ 608 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 PF S+P A+ L Q GRLIR+ G V I D+R+ T+ YG+ LLD+LP Sbjct: 609 GGGNPFIAYSVPQAAITLKQGFGRLIRARTDRGIVAILDRRIRTRGYGRVLLDSLPDARR 668 Query: 693 EQ 694 Sbjct: 669 TD 670 >UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA Length = 661 Score = 431 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 146/676 (21%), Positives = 268/676 (39%), Gaps = 49/676 (7%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + D+ R Q +M + + G + IEA TGVGK+L+YLIP + E + Sbjct: 11 LPKLWKDYEVRKEQMEMSQAIESAF--QTGSNWVIEAGTGVGKSLAYLIPSALFSLENEC 68 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 T+VVST +LQDQ+ KD+PL+ + + + A G Y+C R + + Sbjct: 69 TVVVSTETKSLQDQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVMERGDFGPE 128 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + + L + + G+R D + + W ++ + +CL Sbjct: 129 MESSLP----------------YFVNWEKQTESGIRAEYDGFLSNSFWSSVARESDNCLG 172 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV 256 RNC + +F+ + + ++A +++ NH L+ + + + L P LV+DE H P++ Sbjct: 173 RNCPNFSSSYYFLEKDKWKKANILIVNHHLLASHLAGDFKLLPP-FSQLVIDEAHVFPEI 231 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 A L F + + + + + E ++ +L+ ++ Sbjct: 232 VGKAFGSEIRYEFILNLLHYLYFPEKRTGLVLKLKS-NEKIIKQIEASISYANDLFRMLL 290 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 S + + + G L + L L+ LS+ Sbjct: 291 SAIPLQFNQFSSRHTERIKLDNG--------------ALEDTLADLSSTLEGLLSKYKKD 336 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW-FHC 435 D + L L + G + S L + + W + + + Sbjct: 337 SDDMEEKELALGLEMVAGNLKKVSSF--LTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFS 394 Query: 436 VGIRVSDQLERLLWRSIPHIIVTSATLRS-LNSFSRLQEMSGLKEKAGDRFVALDSPFNH 494 + L L+ ++ +++TSATL +F + G E + L+SPF + Sbjct: 395 QPKNTDEILANTLFPNMDSVVLTSATLSPTAGNFQYFLKEVGTSE---VKTKTLNSPFQY 451 Query: 495 CEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV 554 + +P+ +P D + I +++ ++ VLF S + + + + Sbjct: 452 QTHSLLFVPKQIADPVSDPKRNKID--LSYWITRLLKLSEGDAFVLFTSNKLLSELYEEI 509 Query: 555 TDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKI 613 +L + Q + ++ + SVL G+ SF +G+D+KGD L V + K+ Sbjct: 510 RNLVPYPIFAQTEMGPIAA----KREFLANKNSVLFGVSSFWQGVDIKGDKLRNVIVTKL 565 Query: 614 AFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 F PV+ + E ++ + PF +P L Q GRLIRS G V I D R Sbjct: 566 PFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCLLLRQGFGRLIRSQSDTGMVSILDPR 625 Query: 674 LLTKNYGKRLLDALPV 689 + TK+YGK +L +LP Sbjct: 626 IHTKSYGKNVLQSLPK 641 >UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXI2_STRM9 Length = 667 Score = 431 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 181/704 (25%), Positives = 302/704 (42%), Gaps = 49/704 (6%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 I Y L DF R Q M + K + + + +EA TG GKTL YLIP I Sbjct: 2 IEKIYNRLYSDY-DFEKRENQINMSKIIKKGIDNDMP--VLLEAETGSGKTLGYLIPAID 58 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALAS 129 A E K +V+ST + LQDQI +K+LPLLKK+ + +K+T GR YVC R L Sbjct: 59 FALTEMKNIVISTNTLNLQDQILNKELPLLKKLFGEKMKYTLIKGRNNYVCKRKL----- 113 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 QDL+ DDE + E K G R I +DLW + + Sbjct: 114 -----QDLVMKSDDEKYMDLIEAVKA-----------SLTGDRSDIKYKISNDLWNEIKS 157 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHA-LVMAAMESEA--VLPDPKNLLLV 246 DK S C YY+ C F+++R + + + + NH L++ + + V PK L+V Sbjct: 158 DKDSTFANKCPYYKSCYFYLSRSKNEHCNIFIVNHHILLLDHIIKQNNNVGLIPKYDLIV 217 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 +DE H+L +V R +S +++ L++ V I + Sbjct: 218 IDEAHNLENVVRKYYSLSFSFKEV-FKIIGMLYSNNVKDIENAGLIGKIIINISENSNHF 276 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 +EL E+ S N + + ++ R + +L + ++L + Sbjct: 277 LIDELKEIFFSNINNIYYALVELRKKIVRKYTDLNQNGILTKDICDLNVNDLLEKIFSSN 336 Query: 367 LNDLSE----KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 L E + L + L++ + + L L + + + W Sbjct: 337 LILKKEVYRLINFLEERDELDKDNLRLFLSSSYNNLEEHLNTLQEIFELNYEKYIYWMNL 396 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 + + + +S + I +I+ SATL NSF ++ G+ + Sbjct: 397 D--IDNVFPIINATPYSISKEFGENFIEKIRKVILISATLTVGNSFRYIKNSLGIIDSVE 454 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + + S F++ I +P P+ + + + + + K + VLF Sbjct: 455 EN---IPSEFDYLNNMNIYLPDNLPLPNEIDFNERATKFILDYAE----KNNGKCFVLFT 507 Query: 543 SGRAMQRFLDYVTD--LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 S + ++ +Y+ L +L+QG+ L+++ +++ E S+L+G SF EG+D+ Sbjct: 508 SYKDLKFVANYLNKYSSSLNVLIQGEYEIIELIKMFKEK----ENSILLGTYSFWEGVDV 563 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY-PFEVQSLPSASFNLIQQVGRLIR 659 +G+ LS V I K+ F D P+V + L LN F+ LP A + Q VGRLIR Sbjct: 564 QGEALSNVIIFKLPFQVPDDPIVSSICYRLNELNSNSAFKEFQLPYAVLKMKQGVGRLIR 623 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVK 703 S G ++I DKR+ K+YGK +L +LP IE + + ++K Sbjct: 624 SKEDKGNIIILDKRIHKKSYGKIILKSLPKGNIEILSIEDILLK 667 >UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_ACISJ Length = 688 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 178/747 (23%), Positives = 275/747 (36%), Gaps = 97/747 (12%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+L+ L + A L P R Q M VA+ + E L +EA TG+GK Sbjct: 1 MSLS-DLVLPVFAPDGPLARVRPHLRSRPGQAAMALAVAQAINARES--LVVEAGTGIGK 57 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYV 119 T +YL+P + + +++STA LQDQ+ ++DLPLL++ + + A GR Y+ Sbjct: 58 TFAYLVPALL----SGERVLISTATKTLQDQLLTRDLPLLQQALALPLRVAALKGRANYL 113 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L + +A E+ + GDL + Sbjct: 114 CLYRLEQARRDGEGHDEAVA------HDLACVERWAQSTRSGDLAEVP--------GLDE 159 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL-- 237 WR++++ +CL C R+C + AR + Q A+V++ NH L A + ++ Sbjct: 160 YSAAWRQVTSTVDNCLGSMCPRLRQCHVYRARHDAQAADVLIINHHLFFADLGAQGAGAA 219 Query: 238 -PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P ++V DE H L ++A L + Q + Sbjct: 220 QLLPDTGVVVFDEAHRLAEIAAQFLGTHVSTSQLL-----------------QLGQDVVA 262 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE---HRFAMGELPDEVLEICQRLA 353 A R A + L + + + L L + G++A+ R A + E L+ Sbjct: 263 AGARHARGAADWQGLLQHLRQCAHALRLAVAPGEDADAAGSRIAWTGVTPEALDPSAWDG 322 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 L + L + + D+ LH + + L R+ + Sbjct: 323 ALEGAVAALRAVLAALDGVAQHAPDLAHLHSRTVAL------------LERVLHFCSEAD 370 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLL---------WRSI---------PHI 455 A +W L + V+ L L W Sbjct: 371 AGTVRWVESAG-----ALRMVETPLDVAGALRTLWKGKPPTQGAWDESDEPPAASAPRSW 425 Query: 456 IVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEE 515 I TSATL + GL+ G R + + SPF++ Q + +P PS Sbjct: 426 IYTSATLGDGKDLRWFTDACGLE---GARTLQVPSPFDYARQAALYVPPALPLPSDAGHS 482 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL-----RLMLLVQGDQPRY 570 +A ++ LVL S RA+ D + + +LVQG R Sbjct: 483 VQLARWVGDAVARL----GGHTLVLTTSLRALAVIADELCRRFAPGGGIEVLVQGHASRS 538 Query: 571 RLVELHRKRVANGE---RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 R+VE R ++ VLVG SF EG+D+ G+ L V I K+ FP P + Sbjct: 539 RMVERFRAQLDASGRPAGHVLVGAASFWEGIDVPGEALQMVVIDKLPFPAPGDPWEQAQA 598 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 L F +LPSA+ L Q GRLIR+ G +VI D RLL K YGK LL AL Sbjct: 599 RRLADQGGNVFRRHALPSAAVALKQGAGRLIRNENDHGILVIADTRLLHKGYGKPLLRAL 658 Query: 688 PVFPIEQPEVPEGIVKKKEKTKSPRRR 714 + E + R Sbjct: 659 APMR--RLHTQEEFGAALDALTRTSTR 683 >UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV0_ANADF Length = 635 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 169/662 (25%), Positives = 248/662 (37%), Gaps = 60/662 (9%) Query: 45 EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII 104 E R+L EA TG GKTL+YL+P + ++VSTA LQ+QI+ KD+PLL++ Sbjct: 2 SERRYLVAEAGTGTGKTLAYLVPAAL----SGRRVIVSTATKTLQEQIWGKDIPLLRERC 57 Query: 105 P-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDL 163 + GR Y C A T +EE +++ Sbjct: 58 GVEFAAAYLKGRSNYFCLARGAEFARAP--------------TFAAREEAALWPRIEAW- 102 Query: 164 DTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVAN 223 G R D+ W+ LS +C R C Y +C AR +++V++ N Sbjct: 103 ARATETGDRSEIDLPDQFHTWKDLSATAETCAGRECERYEDCFVTRARALAGQSDVLLVN 162 Query: 224 HALVMAAME----SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE-ITAPWYRLQLDL 278 H L A + V P+ ++V DE H + +VA + + Sbjct: 163 HHLFFADLAMRTSRAGVEILPEYDVVVFDEAHAIEEVATEYFGLQISSYRVEELGRDALR 222 Query: 279 FTKLVATCMEQFRPKTIPPLAIPERL-NAHCEELYELIASLNNILNLYMPAGQEAEHRFA 337 R T ER A + L+ A R Sbjct: 223 AVGDRPDLASMMREATGELRRAGERFFQALADGLHASGAGAARGWGARAGGRGRGPRRRE 282 Query: 338 MGE-----LPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA 392 E L EVLE C+R + L D + R L +++ Sbjct: 283 EDESVRAPLTSEVLEPCERDQARLDAALEALRELLADAEAPPLAQIARRAGELRVELAAV 342 Query: 393 LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSI 452 M E +A R ++ I V+++L+ L+R Sbjct: 343 TAMKE----------------PSRVYFAEVRGRG----VFLRAAPIDVAEELQARLYRRT 382 Query: 453 PHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSID 512 +I TSATL + F + GL + PF+ Q IV P EP+ Sbjct: 383 DTVIFTSATLAAQGRFDYFRRQVGLAPEFDVDEARFPGPFDFPRQAAIVTPPTVPEPNAP 442 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRL 572 A + VL S R M + DL +L+QG++P+ RL Sbjct: 443 GFLDAAAGTIRALAE----VTGGRAFVLCTSNRNMHALHGALRDLPYQVLLQGERPKARL 498 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 +E R E SVL SF EG+D+ GD LS V I ++ F P PVV L++ Sbjct: 499 LEAFRA-----EPSVLFATASFWEGVDVPGDALSLVVIDRLPFAPPGDPVVAARLRALEA 553 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 R F +P+A+ L Q GRL+R+ G G V I D+RL+TK YG+ L LP P+ Sbjct: 554 EGRDGFSELQVPAAALALRQGFGRLVRTRGDRGLVAILDRRLVTKGYGRAFLATLPRCPV 613 Query: 693 EQ 694 + Sbjct: 614 LR 615 >UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP Length = 698 Score = 425 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 166/736 (22%), Positives = 274/736 (37%), Gaps = 79/736 (10%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 + L A++ A LQ+ + R Q QM VA + L EA TGVGK+ Sbjct: 18 SRAPELVARVFAEGGWLQDAL-QLEHRPEQEQMGRAVAAAFRDDAP--LLFEAGTGVGKS 74 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP---------DLKFTAA 112 L+YL+PGI A ++ + L+VST ++LQ+Q+ +KDLP+ +++ D K T Sbjct: 75 LAYLVPGILHAIDQSRQLIVSTHTISLQEQLETKDLPICRRLFRSNPALARYADFKATVL 134 Query: 113 FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 G+ Y+C L + T +E +R A G + GLR Sbjct: 135 VGKSNYLCTTRLAHALADRAT----------LFADAEYDELQRIAAWAGKTE----TGLR 180 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM---- 228 ++W ++ D +SC ++C +C + AR ++ A V+V NHAL+ Sbjct: 181 HELRPPPRPEVWDVVNADSSSCSRKHC-DCEKCFYQRARARLRAANVIVVNHALLFALIN 239 Query: 229 ------AAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKL 282 ++A + +VLDE H +PDVA + +S L+ + Sbjct: 240 AGGAQAHGATTDARGVLFPDDFVVLDEAHTVPDVATENFGLSLSSYGVERALKYLYNPRT 299 Query: 283 VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 + + L + + ++ IA + Sbjct: 300 QRGLLRKRGGAEAQQLVL--DALDASRQFFDFIA-----------------NSLLTPRPV 340 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 V E L L L L + + L L++ L Sbjct: 341 VRVREPEAAEPLLDGPLTALHRLLGKLADKLDEGRERDELLEQKLRIKSLQAGVTEWLTL 400 Query: 403 WRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 WA R R+ Q + I V+ +L + L+ ++ TSATL Sbjct: 401 ---------GDPGHVYWAERSGRK-QTIVTLRSAPIDVAPELRQHLFGCNTSVVCTSATL 450 Query: 463 RSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMA 522 + G + R VA+ SPF+ ++ + PS + + Sbjct: 451 AMGGEIAPFAARIGADD---ARAVAVKSPFDFEHHMRVYVATDVPLPSPQEARLALDALT 507 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYV----TDLRLMLLVQG-DQPRYRLVELHR 577 + + + G LVLF S M+ + ++QG + R L + R Sbjct: 508 DYI-RFCTERVRGGSLVLFTSYADMRAIATTLEPVYRAAGRPFMMQGAELSRTELAQQMR 566 Query: 578 KRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYP 637 +VL G SF G+D+ GD L+QV I ++ F P P+ + ++ P Sbjct: 567 H----LGNAVLFGTDSFWTGVDVPGDALAQVIITRLPFDPPTHPITEARCDHIRDRGGNP 622 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEV 697 F +LP A Q VGRLIR+ G + I D R+L K+YG+ ++ LP + Sbjct: 623 FNELTLPDALIKFRQGVGRLIRTATDRGLITILDSRVLAKSYGRLFVECLPNPNFMRLSR 682 Query: 698 PEGIVKKKEKTKSPRR 713 + + P R Sbjct: 683 RDREERFLPFASPPAR 698 >UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NN01_GLOVI Length = 719 Score = 424 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 155/703 (22%), Positives = 255/703 (36%), Gaps = 88/703 (12%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M+ ++ ++ + +P + R PQ M V + A E + EA TG GK Sbjct: 62 MSPYTRQMISLSDAFEDVARVLPGYEVRQPQLDMARAVERGFA--ERIAVVAEAGTGTGK 119 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 + S L+P I K +V+STA +ALQ+Q KD+PLL+K +P + GR YV Sbjct: 120 SFSALVPAIL----SGKRVVISTATIALQEQYLYKDIPLLQKALPVRFEARLVKGRSHYV 175 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 R + + G + Sbjct: 176 SKRRWSESLLAPG------------------------ITWLREWYEQTESGDLADLPTSP 211 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD 239 ++W + +DK CL C ++ C +F +RR + +A++++ NHAL++ S Sbjct: 212 PSEIWDDIRSDKDDCLREKCPHFDSCFYFESRRSLGQAQILITNHALLLIDRAS-HGQIL 270 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P LLV+DE H + A AL ++ + + + + Sbjct: 271 PDFDLLVIDEAHQFAEYATRALTLTLSNFGM-------------GRTLSRIKKQFPNLGI 317 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 R A +E++ + + Y + + L Sbjct: 318 ALARAEAEANAFFEVLLTEAHQTRRY------------------------NLDPAMADDL 353 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 L L E + + L E + + G W Sbjct: 354 SAAVVRLLQSLKELNLGSEDNLETNVARMRRDRL--VETLTGYEGNLRVLAEPGENWVNW 411 Query: 420 ATREE-REGQLHLWFHCVGIRVSDQLERLL-WRSIPHIIVTSATLRSLNS--FSRLQEMS 475 + R G ++ +C + V+ L + P + SATL + + F + Sbjct: 412 VEYQTTRGGGTNVALNCTPLDVAPPLGQWFSHPDGPTAVWMSATLSTAGADPFDFFRRQV 471 Query: 476 GLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHL 535 GL + + SPF++ QG + +P +P N+ + +AA K V + Sbjct: 472 GLPAGTAEERI-FASPFDYPSQGLLYLPTHLPDP---NDASYANAIAAEIEKLV-NFSEG 526 Query: 536 GMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 VLF S + M++ + L Q P+ RLVE R + VL SF Sbjct: 527 RAFVLFTSLQQMKQVYALLEAKLLWPAQHQEQMPKRRLVEWFR----TVKNPVLFATASF 582 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY---PFEVQSLPSASFNLI 651 EG+ ++G LS V I +I F V E L + F+ +LP A L Sbjct: 583 WEGVSVEGPQLSLVVIDRIPFQSPGDIVYDARCELLSRTSGDRWAWFDRLALPYAQLRLK 642 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 Q GRL+R+ G V I D R+ K YGK +L +LP + + Sbjct: 643 QGAGRLVRTRTDKGIVAILDPRMHRKAYGKTILKSLPPMQVSR 685 >UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3T0_9PROT Length = 620 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 149/705 (21%), Positives = 242/705 (34%), Gaps = 106/705 (15%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 L EQ+P + R Q ++ ++A + G L EA TG GKTL+YLIP + Sbjct: 12 FERGGLLDEQLPGYGRREEQIKLAGEIAGCIVS--GSRLLAEAETGTGKTLAYLIPAL-- 67 Query: 72 AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALAST 130 +++ST +LQDQ+ +DLP ++K + + GR Y+CP+ L S+ Sbjct: 68 --RSSDKVLISTHTRSLQDQLVHRDLPAVQKALGAKRRVALLKGRSNYLCPQRLKTHISS 125 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD---DLWRRL 187 Q E + LD + D + D + + Sbjct: 126 P------------------QVELWAQKTMLKVLDWSRKTQDGDLAALPFDPFAKGIGAMI 167 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLL 244 + C C + CP AR++ Q A++VV NH+L++A ++ P + Sbjct: 168 TATADQCAGSKCAEFEHCPLMKARQKAQGADIVVTNHSLLLADAALKSGDFGEVLPAFDV 227 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 VLDE H LP +A + + + A + + + Sbjct: 228 YVLDEAHSLPQLAGQHFGIQLTRMNF-----IQWLNDMQAELEAMGDEPALKKDIVEQGR 282 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 L + +L + R Sbjct: 283 VVLEAWLESGLEALEEAWGDMLKLSDLRRER----------------------------- 313 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 S + RL Q+ + M + G W+ E Sbjct: 314 -----------SEPLTRLAERAEQLAEEIAM-------------VKKPGDGFVGWSEGEG 349 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + + + L + LW I+ SATLR SF + GL + Sbjct: 350 ELTRYTV----APVETGPVLAKHLWSRQAAFILLSATLRVSGSFDYARNRLGLADAEECF 405 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 SPF++ +Q I +PR + + + + VLF + Sbjct: 406 H---PSPFDYAQQAMIYLPRHMPDSRSPGAVATMTDEIETLLR----ASRGRAFVLFTAW 458 Query: 545 RAMQRFL-DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 +++ + L +L+QG+ + SVL G +SF EG+D+ G+ Sbjct: 459 SMLKQVAPELARRLPWDVLIQGESGSRDAI---LDAFRADTHSVLCGTRSFWEGVDVPGE 515 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 LS V I K+ F P + P++ + F LP A L Q GRLIRS Sbjct: 516 SLSMVIIDKMPFAPPNDPLLQARIRRCEEQGGSGFRDIQLPEAIATLRQGAGRLIRSEDD 575 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ--PEVPEGIVKKKE 706 G + + D RL K YG+ + LP PI +V + E Sbjct: 576 RGVMALLDSRLYHKAYGREAVHNLPPAPIRDDLADVRWFFEEASE 620 >UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP2_SALAI Length = 699 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 170/706 (24%), Positives = 264/706 (37%), Gaps = 83/706 (11%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 +P R Q++M + ++ E HL ++A TG GK+L+YL P + + +V Sbjct: 57 AVPGGAARPGQQEMTTAIEAAVSARE--HLLVQAGTGTGKSLAYLAPALTV----DGPVV 110 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQ 135 VSTA +ALQ Q+ DLP L + L F GR Y+C L EP Sbjct: 111 VSTATLALQSQLVDHDLPRLADAVEPLLGRRPTFAVLKGRHHYLCLARLDNATEEEPGD- 169 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKG--DLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 L T E + +++ D G RD D +DD WR +S Sbjct: 170 TLFDQPTPSGTTWLGEAGRLGRQVQRLRDWAEKTDTGDRDELDPGVDDQAWRLVSMPARE 229 Query: 194 CLNR-NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 C+ C + EC +R +EA++VV NH+L+ M + P + LLV+DE H Sbjct: 230 CVGAARCPFGAECFADASRARAREADIVVTNHSLLAVDMLAGRH-IVPPHQLLVVDEAHE 288 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 L D A + +L+ + RP P E L + L Sbjct: 289 LADRVSSAAQAEL-------------VPELIDRSTRRARPLLRP--ETAEALTTAGDALA 333 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 +A G L + Q L + Sbjct: 334 VGLAEA------------------PAGRLTAGLPAPLQEACTLLDA--ATRAALDAIGEI 373 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 K D VR ++ + +L A W R + G+ Sbjct: 374 KADDPDPVRKQQVKAVL----------DELSGTAQRLLDEADHDVAWVERNDVTGRRA-- 421 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK--------AGDR 484 + V+ L L+ ++ TSATL F + GL+ G + Sbjct: 422 LVVAPLSVAGTLATHLYED-RTVVATSATLTLGGRFDSVARALGLEAPAEAPVTSGPGWQ 480 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + + SPF++ QG + + PS + + L LF+S Sbjct: 481 SLDVGSPFDYARQGILYVAAHLPRPSASGLPDAAGAELLGLVEAL----GGRTLGLFSSR 536 Query: 545 RAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 RA Q+ + + L +L+QG+Q LV +R + S L G+ S +G+D+ GD Sbjct: 537 RAAQQAAELLRARTDLPVLLQGEQALPLLV----RRFREEQSSCLFGVMSLWQGVDVPGD 592 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 V I ++ FP D P+ + + F S+P A+ L Q VGRLIR+ G Sbjct: 593 ACQLVVIDRLPFPRPDEPLAAARAAAVDADGGSGFAAVSVPIAAVRLAQGVGRLIRATGD 652 Query: 664 WGEVVIYDKRLLTKN-YGKRLLDALPV-FPIEQPEVPEGIVKKKEK 707 G V + D RL T YG L +LP + +P+V G +++ + Sbjct: 653 RGVVAVLDSRLETARGYGPFLRRSLPPFWYTTRPDVARGALERLAR 698 >UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD62_RHOM4 Length = 673 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 181/715 (25%), Positives = 291/715 (40%), Gaps = 85/715 (11%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 AL ++ L++Q P F R QRQM V + +A EG AIEA TG GKT YL Sbjct: 8 ALWGRVRELLARLEQQ-PGFELRPGQRQMAETVVRAIA--EGLPAAIEAGTGTGKTFGYL 64 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNL 124 IP + ++VST+ ALQ+Q+ KDLPLL K++ + + GR Y+C + Sbjct: 65 IPALCAEAR----VLVSTSTKALQEQLVHKDLPLLGKLLDRPISWALLKGRQNYLCRLKI 120 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + A E ++E + +L DG + + L Sbjct: 121 ESGAQEE------------RPVFETRDEAEAFRRLLEWARRSDTDGDLEQFPGRVTPALR 168 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM-----ESEAVLPD 239 ++ D C R C +Y C ARR + +VVV NHAL++ + A+ Sbjct: 169 ELVTMDADGCGGRQCPFYDTCFLMEARRRAERVDVVVVNHALLLQDLMLRARSGGALYLL 228 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P+ +LV+DE H L ++A AL + +E+ R + + Sbjct: 229 PEAEVLVIDEAHRLEEMALGALSVYIS-----------------PYRVERLRRQALRLPG 271 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 I R A E L + L + + A L +L + R L +++ Sbjct: 272 IDHRTRAELEALGLVADELKRQADTALAGRPAAPLT---EALSVVLLNLRDRAGVLGDLV 328 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 L L R ++ + R ++ WR + A + Sbjct: 329 GQTMRLQLQRFGGSAQQELQARYEAVLRGLQRLAADAGVITERWR------AQAAEHVLY 382 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL-------------- 465 RE R H C + L+++L+ + P ++ TSATL +L Sbjct: 383 VQRERR----HPVVICQPLDAGGTLQQVLFEAFPTVVCTSATLTTLAQPLRRRAAAGEAS 438 Query: 466 -NSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV--EPSIDNEEQHIAEMA 522 F+ + +G E+ + + + +PF++ Q + +P +P+ + + Sbjct: 439 DGPFAYFRRRTGFPEEGLE--LIVPAPFDYRRQALLYLPPDPARLDPTRIRDARTQQAYE 496 Query: 523 AFFR---KQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKR 579 + + + LVL S R M+R + + + +LVQG PR RLV + + Sbjct: 497 EALIGEVQALVAASRGRALVLTTSLRMMERLAEALQECGYPVLVQGSAPRARLVRQLKAQ 556 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 SVLV ++F EG+D+ G+ LS V I ++ FP + P + FE Sbjct: 557 A-----SVLVATRAFWEGVDVPGEALSLVVIDRLPFPGREDPYWQAR---YEQAGDDWFE 608 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 +++LP A L Q GRLIR+ G V + D RL TK YG+ +LDALP Q Sbjct: 609 LEALPQALLTLKQGFGRLIRTRTDRGVVALLDGRLQTKYYGRWILDALPPARRVQ 663 >UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XY97_LEPCP Length = 658 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 171/727 (23%), Positives = 271/727 (37%), Gaps = 88/727 (12%) Query: 1 MALTAALKAQI---AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTG 57 M +AL+ ++ A L F PR Q ++ VA L EE L EA TG Sbjct: 1 MTPVSALREEVALAFAATGVLARTEKQFRPREVQTRLADAVAHAL--EERSVLVAEAGTG 58 Query: 58 VGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRG 116 VGKT +YL+P + +VSTA +LQDQ+Y +DLP L +++ ++ GR Sbjct: 59 VGKTYAYLVPLLL----SGLRALVSTATKSLQDQLYLRDLPRLVQLLGLPVQVALLKGRA 114 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 Y+C L T L + EQ GDL + R Sbjct: 115 SYLCLHRLDHARHTAELPD------RHSLRVLARVEQWSKTTRSGDLAELEVLDERS--- 165 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---S 233 + +++++ +CL +C +R+C ARRE +A++VV NH L A M + Sbjct: 166 -----PVIPLVTSNRENCLGSDCPQFRQCHLVQARREAMQADIVVVNHHLFFADMALRDT 220 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 P +V DE H L + L + T + Sbjct: 221 GMAELLPSVDAVVFDEAHQLNEAGVQFLG-------------RHIGTGQLLDIGRDLLAA 267 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 + + + L + L L A R E + + Sbjct: 268 GLAHARGLQD----WQALAGAVEQGARRLRLACAGTLRAAGRLRWDE-----RGLSEDFV 318 Query: 354 KLTEMLRGLAELFLNDLSE-KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 R + L + D+ +L + L F + Sbjct: 319 AALTDARAACVAASDALGVVADAAPDLAKLQERAQALAAQLAAFLGPVE----------- 367 Query: 413 GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQ 472 +W + + + + + L + I TSATL + S Sbjct: 368 -HGHVRWIDLTLHQAR----LAESPLDIRETLREQIEGERRAWIFTSATLGDDPALSWFT 422 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 +G+++ + SPF++ ++ +P PS ++++AA + + Sbjct: 423 RSAGVED---AHTLRAGSPFDYGRNARLFVPARFPRPSEATHPAAVSQLAARCAQAL--- 476 Query: 533 KHLGMLVLFASGRAMQRFLDYVTDL------RLMLLVQGDQPRYRLVELHRKRVANGERS 586 VL + RA+Q + + +LVQG+ P+ L+ R R+ Sbjct: 477 -GGRCFVLTTTLRALQGIGADLRARLATLPDPIDVLVQGEAPKRALM----ARFLATPRA 531 Query: 587 VLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSA 646 VLVG SF EG+D+ G L V I K+ FPP + P+ L++ PF+ +P A Sbjct: 532 VLVGSHSFWEGIDVPGSALQCVLIDKLPFPPPNDPLAEARCRSLEAQGGKPFDDYFIPEA 591 Query: 647 SFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKE 706 + L Q GRLIRS G +VI D RLLT NYG+RL+ ALP P+ E + + Sbjct: 592 AVALKQGAGRLIRSETDRGLLVICDTRLLTMNYGRRLMGALPPMPLVGDE-----AEALQ 646 Query: 707 KTKSPRR 713 S R Sbjct: 647 WLASLAR 653 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 420 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 145/732 (19%), Positives = 271/732 (37%), Gaps = 57/732 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + + + E + PR Q+ M ++V + + +L +EA TGVGK++ Sbjct: 331 PSQQDLDAMFDARGVVGEMYAGYEPRMEQKIMASEVLRAFS--TSTNLVVEAGTGVGKSM 388 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRGR 117 +YL+P A + V+T AL DQI K+LPLL + DL++ A G Sbjct: 389 AYLLPSAMAALRNGIPVGVATKTNALLDQIVYKELPLLHDALAAKGFGDLQYVALKGFRH 448 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y C + ++ ++ + + + L G L + D + Sbjct: 449 YPCLLRIDSVMRDGVHDVNV-----------SGRDISQAPSLAGMLSFIEQTEYDDIDGL 497 Query: 178 AIDDDLWRR--LSTDKASCLNRNCYYYR-ECPFFVARREIQEAEVVVANHALVMAAMESE 234 ID + R ++T+ CL R C +Y C +R++ + + +VV NH+L S+ Sbjct: 498 KIDYRVLPRYAVTTESRDCLRRKCPFYGTYCFVHGSRKKAERSHIVVTNHSLFFRDASSD 557 Query: 235 AVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL-----------DLFTKLV 283 L PK V+DE H AR AL +S + + + + Sbjct: 558 GSLL-PKAPFWVVDEAHGAEAEARRALSVSLDASEMLRLSRRLASDEGARNPFVRLERRA 616 Query: 284 ATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 C + + E+ ++ AS + + + + R+ + +L Sbjct: 617 PECEAVLPEASTLFFGLTEKAKKRGKDFAVAAASFAHGMKDLSACATQQDRRYDVFDLW- 675 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG-----MFEA 398 + + + E+++ ++ + ++V + + Sbjct: 676 -INDDVRACDAFVELVKKASQFREAAERLASSGSELVAFLEETDGLGDVQRDIATIAIDV 734 Query: 399 QSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 +S L ++ ++ A + + + I V +L++ L+ I+ Sbjct: 735 KSMLQACEAIMETPDRNYVYSAHVSRKPEHVAERLEAMLIDVGQELDQTLYERTRSIVYA 794 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRF--VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQ 516 SATL + FS GL R L S ++ ++ + +P + Sbjct: 795 SATLSVGHGFSSFNRAMGLGGDGPARVNECLLGSSYDFENHMRVFVLNDIPDP---RDPA 851 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRL 572 ++ + + + ML LF + R M+ D + + L ++ Q + Sbjct: 852 YLP-ILEGLLARAHIAQGGSMLTLFTNRREMETCFDDINPRMKEEGLRVVCQKWGVSTKG 910 Query: 573 VELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 + R E L L+SF EG D G L V I ++ F + P+ + Sbjct: 911 L---RDEFIANETLSLFALKSFWEGFDAPGSTLKGVIIPRLPFSSPNDPLSKERA----A 963 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 + + LP+A +L Q GRLIRS G +++ D+RL+T YG+ L +LP I Sbjct: 964 REKGAWSKYCLPAAVIDLKQAAGRLIRSSTDTGILILADRRLVTMGYGRTFLRSLPSQNI 1023 Query: 693 EQPEVPEGIVKK 704 E I Sbjct: 1024 TVCSTDELIEAM 1035 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 160/732 (21%), Positives = 263/732 (35%), Gaps = 52/732 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + + A + P + PR+ Q QM +V LA H IEA TGVGK++ Sbjct: 279 PSREEIEERFAPGGLVNRMYPGYEPRSEQVQMAVEVRDALA--TSTHRVIEAGTGVGKSI 336 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL-KKIIPDLKFTAAFGRGRYVCP 121 +YL+P +AR + T+ ++T + L DQ+ +LP L +++ L + A G Y C Sbjct: 337 AYLVPMAELARRNKVTVGIATKSNNLADQLIYHELPRLAREMDGGLTYCALKGYDHYPCL 396 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L LA + + T + + + G D I Sbjct: 397 RKLDRLARAQ-----------EIKTNRDPADTLTAIAVLYAFACQSPTGDFDGLGIRWRS 445 Query: 182 DLWRRLSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 L+T C R C +Y +C +RR +VVV NH+L+ + +E P Sbjct: 446 VNKADLTTSSRECARRLCPFYPDKCMVHGSRRRAARVDVVVTNHSLLFRNVAAEGK-ILP 504 Query: 241 KNLLLVLDEGHHLPDVARDALEM--SAEITAPWYRLQLDLFTKLVATCMEQFR------- 291 V+DE H + AR + SA+ + + + Sbjct: 505 PIRHWVVDEAHSIESEARRQWAIKVSADESRAVFERLGGDRAGALGKIARDLALSDAATL 564 Query: 292 --PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEIC 349 T+ + +R + EL++ + L E + A + +++ + Sbjct: 565 FMGLTVKASSSTQRASLAMAELFDAVRELARAARS------EGGYDNANMWIGNDLRD-S 617 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 E+ R + + V + L + A G + L + Sbjct: 618 MVWTGFEEVGRTALDALDEATKNLASLVETVAEEKPDLVTDVADGQRRMRELRDGLRLIL 677 Query: 410 QSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 + R + V + L + I SAT+ +SF Sbjct: 678 DGADDRYVYSCQVNRRLKAGGECLTAERLDVGEALAEEWLPEVHTAIFASATVTVSDSFD 737 Query: 470 RLQEMSGLKE--KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 Q GL + R V LDS ++ +V+ +P Sbjct: 738 HFQHAVGLDRISSSSSRSVHLDSSYDFERNMAVVVASDMPDPRSR---DAYLSALETLLV 794 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPRYRLVELHRKRVANG 583 V L LF + R M+ D + L L Q +++ R R + Sbjct: 795 DVHLAMGGSTLTLFTNRRDMEELYDRVEPRLAQRGLALDCQRRTTSAKIL---RDRFLSN 851 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 E+S L L++F EG D GD L V I K+ F P+ G + SL Sbjct: 852 EKSSLFALKAFWEGFDAAGDTLRCVVIPKLPFASPSDPLSCERGAREDR----AWARYSL 907 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVK 703 P A + Q GRLIR+ G +V+ D RL++K YGK+ L++LP P ++ EV + + + Sbjct: 908 PEAVLEVKQAAGRLIRTSTDAGVLVLADSRLVSKGYGKKFLNSLPA-PHQRIEVRQ-VGR 965 Query: 704 KKEKTKSPRRRR 715 E + RR Sbjct: 966 YLEMWRESHERR 977 >UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3_GORB4 Length = 699 Score = 417 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 179/733 (24%), Positives = 264/733 (36%), Gaps = 105/733 (14%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M + VA + + G HLA++A TG GK+L+YL+P I A + +T+VVSTA +A Sbjct: 23 RDGQVTMASAVAHAI--DTGEHLAVQAGTGTGKSLAYLVPAIRHAVDSGRTVVVSTATIA 80 Query: 88 LQDQIYSKDLPLLKKII-----PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ +DLP L + + F GRG Y+C + A + EP + D Sbjct: 81 LQRQLIERDLPRLAGALKGPLGREPTFAILKGRGNYLCLNKIHAGTADEPDTE----LFD 136 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYY 201 E R + D + G RD ++D WR++S CL NC Y Sbjct: 137 PFELSRTGREVTRLREWSSDTE----TGDRDDLTPGVNDRAWRQVSVTARECLGAANCSY 192 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 +C VARR + +VVV NHAL+ S P++ ++++DE H L D Sbjct: 193 GEDCFAEVARRRSAKVDVVVTNHALLSIDATS-PASILPEHDVVIIDEAHELVDRITSVS 251 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 A L KLV + L A E+ EL+A + Sbjct: 252 TAEVS--AATIALLARRCGKLVDE-------------ETVDALEAAGEQFGELLADAPHR 296 Query: 322 LNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR 381 + +PA + L I A S + Sbjct: 297 QWMSLPASAASVLVALRDRLWQTRTSIGPIRMSGAADESAAA----------ARSAALTS 346 Query: 382 LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA----TREEREGQLHLWFHCVG 437 L L + R LG F+ S W T H Sbjct: 347 LDELHDTIVRLLGAFDE----------PDESKRRDVVWVAEERTSRSPSADTRPVLHIAP 396 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK----------------- 480 + V L L+ +I+TSATL SF L GL Sbjct: 397 LSVGGLLRATLFAQS-TVILTSATLAIGGSFDALAATWGLPASGRGADTPAVDAPAGAGA 455 Query: 481 -------------------AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAE 520 + SPF++ + + R P D E+ + E Sbjct: 456 NPVSDVTASGKAVPRDEQRVRWTGLDAGSPFDYPRSAILYVARHLPRPGRDGIAEKTMTE 515 Query: 521 MAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKR 579 +A L LF+S RA + + + + +L QG+ LV +R Sbjct: 516 LAELI-----DAAGGRTLGLFSSMRAAKEAAEAIRERCDHPVLCQGEDTTSSLV----RR 566 Query: 580 VANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFE 639 R+ L G S +G+D+ G LS V I +I FP D P++ + + F Sbjct: 567 FTEDPRTCLFGTLSLWQGVDVPGPSLSLVVIDRIPFPRPDDPLLTARQRAVDARGGNGFL 626 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVP 698 + A+ L Q GRL+RS G V + D RL T YG L+ +LP + P Sbjct: 627 SVAANHAALLLAQGAGRLLRSVDDRGVVAVLDPRLATAGYGGYLMASLPPFWRTTDPATV 686 Query: 699 EGIVKKKEKTKSP 711 + + KT + Sbjct: 687 RSALARLTKTTTA 699 >UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=11 Tax=Mycobacterium tuberculosis complex RepID=DING_MYCBO Length = 664 Score = 417 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 162/672 (24%), Positives = 250/672 (37%), Gaps = 65/672 (9%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q++M A VA E G HL ++A TG GK+L+YL+P I A + +VVSTA +A Sbjct: 25 RRGQQEMAAAVAHAF--ETGEHLVVQAGTGTGKSLAYLVPAIIRALCDDAPVVVSTATIA 82 Query: 88 LQDQIYSKDLPLLKKII-----PDLKFTAAFGRGRYVCPRNLTA--LASTEPTQQDLLAF 140 LQ Q+ +DLP L + KF GR Y+C + AS ++ Sbjct: 83 LQRQLVDRDLPQLVDSLTNALPRRPKFALLKGRRNYLCLNKIHNSVTASDHDDERPQEEL 142 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNC 199 D + +R + G RD + D W ++S CL C Sbjct: 143 FDPVAVTALGRDVQRLTA----WASTTVSGDRDDLKPGVGDRSWSQVSVSARECLGVARC 198 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 + EC AR A+VVV NHAL+ +E+ + P++ LLV+DE H L D Sbjct: 199 PFGSECFSERARGAAGLADVVVTNHALLAIDAVAESAVL-PEHRLLVVDEAHELADRVTS 257 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 +AE+T+ + T+LV + +RL A I Sbjct: 258 V--AAAELTSATLGMAARRITRLVD-------------PKVTQRLQAASATFSSAIHDAR 302 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 P + + +A LR A + + Sbjct: 303 ----------------------PGRIDCLDDEMATYLSALRDAASAARSA----IDTGSD 336 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + + L + + W E+ + Sbjct: 337 TTTASVRAEAGAVLTEISDTASRILASFAPAIPDRSDVVWLEHEDNHESARAVLRVAPLS 396 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 V++ L ++ ++TSATL SF + GL R + + SPF H + G Sbjct: 397 VAELLATQVFARA-TTVLTSATLTIGGSFDAMATAWGLTADTPWRGLDVGSPFQHAKSGI 455 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-LR 558 + + P D AE + + + L LF+S RA + + + + L Sbjct: 456 LYVAAHLPPPGRDGSGS--AEQLTEIAELITAA-GGRTLGLFSSMRAARAATEAMRERLS 512 Query: 559 LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPI 618 +L QGD LVE + + L G S +G+D+ G LS V I +I FP Sbjct: 513 TPVLCQGDDSTSTLVE----KFTADAATSLFGTLSLWQGVDVPGPSLSLVLIDRIPFPRP 568 Query: 619 DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 D P++ + + F + A+ L Q GRL+R G V + D R+ T Sbjct: 569 DDPLLSARQRAVAARGGNGFMTVAASHAALLLAQGSGRLLRRVTDRGVVAVLDSRMATAR 628 Query: 679 YGKRLLDALPVF 690 YG+ L +LP F Sbjct: 629 YGEFLRASLPPF 640 >UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepID=C7NJ65_KYTSD Length = 765 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 156/698 (22%), Positives = 251/698 (35%), Gaps = 78/698 (11%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 PR Q +M A+VA+ + E HL ++A TG GK+L+YL+P +A A K +VV+T Sbjct: 27 GGSPREGQARMTAEVARAVNTSE--HLLVQAGTGTGKSLAYLVPAVAHAVATGKPVVVAT 84 Query: 84 ANVALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 A +ALQ QI +DLP + + + + + GR Y+C L + + Sbjct: 85 ATLALQAQIVDRDLPRVAEALRSEMGRPITYALVKGRNNYLCQHKLLGGFPDDDADALVS 144 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-R 197 D EE R + G RD + WR++S C Sbjct: 145 MGQVDADRSALGEEVVRLR----EWAQITESGDRDELVPGVSHRAWRQVSVSARECFGAS 200 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C EC ++R ++ +V+V NHA + + P++ LLV+DE H L D Sbjct: 201 RCPVASECFVELSREAAKDVDVIVTNHAFLAIDAIEGRSML-PEHDLLVVDEAHELVDRV 259 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 ++ P T+ A A + L E + Sbjct: 260 TGVAT-------------------------DELTPGTVAIAARKAGKFADTDRLEEAEEA 294 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 L+ L+ G L + L L + RG++ + EK Sbjct: 295 LSQALD-----------PLPEGTLRSLPDALADALVVLRDAARGVSTDLKPEKGEKADGP 343 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 + ++ +A W + R Q Sbjct: 344 QQTARAAV--------------DEVGDVAQRLLEERELDVVWVAPDGRSNQRRNVLRVAP 389 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL--KEKAGDRFVALDSPFNHC 495 + V+ L ++ +++TSATL SF L GL V + SPF++ Sbjct: 390 MSVAMLLREKVFTE-RTVVMTSATLELGGSFDALAGTLGLLGAGAPSWNGVDVGSPFDYP 448 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 +Q + P D + + L LF+S RA + D + Sbjct: 449 KQAMAYVAGHLPAPGRDGTAPEQVDEIEALIR----AAGGRTLGLFSSMRAARAAADEMR 504 Query: 556 DL---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 + +L QG+ LV +R A R+ L G S +G+D+ G V I + Sbjct: 505 ERLGDEFEVLCQGEDQLPTLV----RRFAADARTCLFGTLSLWQGVDVPGSACQLVLIDR 560 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 I FP D P+ + + F S A+ L Q GRL+R G V D Sbjct: 561 IPFPRPDDPLSSARSQAIARNGGNGFMAVSATHAALRLAQGSGRLVRRADDRGVVAFLDP 620 Query: 673 RLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTK 709 R++T Y L +LP +P + + G +++ + T Sbjct: 621 RMVTARYAGFLQKSLPPFWPTQDRALVLGALQRLDATA 658 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 151/727 (20%), Positives = 256/727 (35%), Gaps = 42/727 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 ++ + A + + F R+ Q M +V L R L EA TG+GK++ Sbjct: 272 ISKDEIHRAFAKPGVVSQMYDKFETRSEQVSMSVEVRNALVTSSHREL--EAGTGIGKSI 329 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCP 121 +YL+P A++ T+ ++T AL DQ+ + DLP L + +P+ L F + G Y C Sbjct: 330 AYLLPEALFAQKNDVTVGIATKTNALTDQLVTHDLPALARALPNGLSFCSLKGYEHYPCL 389 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD--TYKWDGLRDHTDIAI 179 + A E L +D E +N + DG D I Sbjct: 390 HRVDRAALEEL----PLTLIDQEGRSSNSVASDMLTAIAVIYAYACQSADGDLDALGIRW 445 Query: 180 DDDLWRRLSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEAVLP 238 ++ A CL C YY EC AR+ ++VVV NH+L++ + ++ Sbjct: 446 RSVPREMVTIKAAECLRSKCPYYPHECFVHGARKRAGSSDVVVTNHSLLLRNVAADGK-I 504 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL 298 P V+DE H AR + +L K A + Sbjct: 505 LPPIRHWVIDEAHGFEAEARHQWAIEISAKEMRNGFELLGGIKSGAIHAAMVGAANLEDS 564 Query: 299 AIPERLNA--------HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQ 350 + L + L+ +++ + L G + + + E E + Sbjct: 565 TLLTGLLTRSAAAVQRAMAAMGNLMVAVHELAPLAKSDGGYNSLQLWINDEVRETKEWKE 624 Query: 351 RLAKLTEMLRGLAELFLN-DLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 L + L L E L + + + L + + L L L + Sbjct: 625 FLETASVALSALEEAALRIGKTTEALTASAPNLASNLSESGMFLSTL-----LESLKLIC 679 Query: 410 QSSGAPVTKWATREE-REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 + A + + + +L ++ TSAT+ + F Sbjct: 680 DGTDKSYVYSAKLTRLKRDIGSEALVAEKLDIGAELAEKWLPETHSVVFTSATIAVGDDF 739 Query: 469 SRLQEMSGLKEKAGDR-FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 S + GL + + + LDS F++ + + P+ + + Sbjct: 740 SHFEHAVGLDRGSFEHKSLHLDSSFDYENHMGVFVAEDMPTPTDPGYLDALEK----LLF 795 Query: 528 QVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRLVELHRKRVANG 583 V + +L LF + R M+R + +++ L L Q R R++ Sbjct: 796 DVHVQMGGSVLTLFTNRRDMERLYEALEPRLSEYGLTLACQERSSSAR---RIREKFLAE 852 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 + L L+SF EG D GD L V I K+ F + P+V + SL Sbjct: 853 KNLSLFALKSFWEGFDAAGDTLRCVVIPKLPFASPNEPLVKEREVREDR----AWWRYSL 908 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVK 703 P A Q GRLIRS G +V+ D RL++K YG L +LP + + Sbjct: 909 PEAVIATKQAAGRLIRSAEDKGVLVLADSRLVSKRYGSSFLKSLPNKNYQCVSTKNISGQ 968 Query: 704 KKEKTKS 710 + + Sbjct: 969 IAKWREE 975 >UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus RepID=C2BW38_9ACTO Length = 711 Score = 413 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 170/728 (23%), Positives = 274/728 (37%), Gaps = 77/728 (10%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 ++ L+ + A L R Q M A V +TL G LA++A TG GK+L Sbjct: 35 PSSELQKALTAAVSLL-----GGSERPGQAAMAAAVERTL--HSGGKLAVQAGTGTGKSL 87 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGR 117 YL+P + E +V+STA +ALQ QI +KD PL + + + L+ G Sbjct: 88 GYLLPALLYCLHEDARVVISTATLALQSQIITKDAPLAVEAVQNVTGSALRVEVLKGWQN 147 Query: 118 YVCPRNLTA---------LASTEPTQQDLLAFLDDELTPNNQEEQKRCA------KLKGD 162 YVC L ++ E + +A + ++ K + Sbjct: 148 YVCLHKLNGGYEGSEDDLFSTMEDSPFSGIAGSGETTAGPGARTTRQMQGFAAETKRLYE 207 Query: 163 LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVA 222 G RD I WR++S C+ C + EC AR + +A++VV Sbjct: 208 WARETTTGDRDEAPRGITARSWRQVSLSSLECVGEKCPFRSECFQVSARDKAAQAQIVVT 267 Query: 223 NHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKL 282 NHA++ + P +++ DE H L + R + Sbjct: 268 NHAMIGLEAAGKQNPLPPCEAIII-DEAHELSERVRSQASTEFS-------------ANM 313 Query: 283 VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 +A+C + + E L L + +L + MPA A+ L Sbjct: 314 LASCAKAAASLGVSGS---EELAQQAIMLGVALQNLEDSRFTEMPAAVAECRMLALSPLK 370 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 + E+ + TE G D ++ + L E + Sbjct: 371 TALTELSAKAGADTESTGGQ-------------RADAAKIAVAKAALTSLLDTLETMT-- 415 Query: 403 WRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 + W TR R+G + + V+ +L LW II TSATL Sbjct: 416 -----PESVANGETILWLTR-GRDGDQEPRLYTAPLDVAGKLANRLWNE-HAIIATSATL 468 Query: 463 RSLNSFSRLQEMSGLK-EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEM 521 + +F+ L GL+ + + + SPF H QG + + R P+ Sbjct: 469 KLGGTFAPLMHKMGLQLDTPKPETLDVGSPFRHDRQGILYLARDLPAPTRGEHPDVFWNR 528 Query: 522 AAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRV 580 + G L LF+S + +R + + + L ++VQG+ LV+ R+ Sbjct: 529 LVDLVE----ASGGGALGLFSSRKMAERAGEVLRERTDLPIMVQGEDSMAALVKDMRE-- 582 Query: 581 ANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEV 640 + L+G S +G+DL G+ V I +I FP PV+ + +K F Sbjct: 583 --DASACLMGTLSLWQGVDLPGNTCRLVLIDRIPFPVPSDPVIEARCDAVKRAGGSDFME 640 Query: 641 QSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPE 699 SL A+ L Q GRL+RS G V + D RL T YG L +LP +P E +V Sbjct: 641 VSLTHAALLLAQGTGRLLRSATDRGVVAVLDSRLATARYGGFLRASLPPLWPTEDSQVVL 700 Query: 700 GIVKKKEK 707 +++ +K Sbjct: 701 DALRRLQK 708 >UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_9ACTO Length = 713 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 179/743 (24%), Positives = 268/743 (36%), Gaps = 119/743 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 +P R Q+QM + +++A G HL ++A TG GK+L+YL P + + +V Sbjct: 33 AVPGGAARPGQQQMAEAIERSIAS--GEHLLVQAGTGTGKSLAYLAPALTV----DGPVV 86 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 VSTA +ALQ Q+ DLP L + F GR Y+C L + EP Sbjct: 87 VSTATLALQSQLVEHDLPRLADAVEPVLGRRPTFAVLKGRHHYLCLARLDSSVEDEPDDA 146 Query: 136 DLLAFLDDELTPNNQEEQKRCAK---LKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 A E R K D G RD D +DD +WR +S Sbjct: 147 LFDAPHSGNGGTKWLGEAGRLGKQVQRLRDWAEETATGDRDELDPGVDDQVWRSVSMPAR 206 Query: 193 SCLN-RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGH 251 C+ C + +EC +R +EA++VV NH+L+ M + P + LLV+DE H Sbjct: 207 ECVGASRCPFGQECFAEASRARAREADIVVTNHSLLAVDMLAGRH-IVPPHRLLVVDEAH 265 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 L D A + +L+ + RP P + ERL + L Sbjct: 266 ELADRVSSAAQAEL-------------VPELIDRSTRRARPLLRP--DVAERLTEAGDAL 310 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 +A R G LP + E C L T Sbjct: 311 AVGLAEA-------------PAGRLTAG-LPPALREACTLLDSATRA------ALEGIGD 350 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 K D VR + + +L A W + + + Sbjct: 351 VKADDPDPVRKQQAKAVL----------DELSTTAQRLLEEADHDVAWVEKPDNGSRRA- 399 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK------------- 478 + V+ L L+ ++ TSATL F + GL Sbjct: 400 -LVVAPLSVAGTLATHLYDE-RTVVATSATLALGGRFDTVARALGLDAPPPAPPSPAAAA 457 Query: 479 -------------------------------EKAGDRFVALDSPFNHCEQGKIVIPRMRV 507 E G + + SPF++ QG + + Sbjct: 458 IATAAAAGRSPVTPVAAAEGSRASVGTVPATEGPGWSSLDVGSPFDYARQGILYVAAHLP 517 Query: 508 EPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGD 566 PS+ E + + L LF+S RA Q+ + V L +L+QG+ Sbjct: 518 RPSVSGLPGPAGEELLALVEAL----GGRTLGLFSSRRAAQQAAELVRARTDLPVLLQGE 573 Query: 567 QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITE 626 + LV +R S L G+ S +G+D+ GD V I ++ FP D P+ Sbjct: 574 EALPLLV----RRFREVRESCLFGVMSLWQGVDVPGDACQLVVIDRLPFPRPDEPLAAAR 629 Query: 627 GEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN-YGKRLLD 685 + + F S+P A+ L Q VGRLIR+ G G V + D RL T YG L Sbjct: 630 AAAVDAGGGSGFAAVSVPIAAVRLAQGVGRLIRATGDRGVVAVLDSRLETARGYGPFLRR 689 Query: 686 ALPV-FPIEQPEVPEGIVKKKEK 707 +LP + +PEV G +++ K Sbjct: 690 SLPPFWYTTRPEVARGALERLAK 712 >UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibacterium acnes RepID=D1YCN3_PROAC Length = 683 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 149/712 (20%), Positives = 264/712 (37%), Gaps = 93/712 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M V + + + HL ++A TG GK+L YL P + E+ ++V+TA +A Sbjct: 29 RPGQVAMAKAVDQAM--RDKLHLLVQAGTGTGKSLGYLAPALVYCVEKGAQVIVATATLA 86 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ KD+P + + + GR ++C + ++ Q L+ D Sbjct: 87 LQAQLAYKDIPTILDASEKVLSRRPRVAVLKGRNNHICLHKVRGSSTRTKGQDALVPGAD 146 Query: 143 DELTPNNQEEQKRCAK--------LKGDLDT--YKWDGLRDHTDIAIDDDL-WRRLSTDK 191 + ++ E + + + + + GL D D L W ++S Sbjct: 147 LVVAADDGREVEAAPESTLGAEVVMLREWAEKQVEESGLGDRDDAPAHTPLAWAQVSVPA 206 Query: 192 ASCLN-RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG 250 CL + C + EC AR + + A++VV NHA++ + + P++ +++DE Sbjct: 207 NECLGVQRCPFGSECLSEAAREQARNADLVVTNHAMLAIDALNGGRVL-PEHDTVIIDEA 265 Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310 H L + A M R T + L + Sbjct: 266 HELVNRFTRAASKDLSPAIVT---------------MTAKRAMTWLDDDVGADLLNQADS 310 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 + + ++ P V ++ + +LR LA + ++ L Sbjct: 311 MAHALEAI----------------------APGRVTTPDAQVIQTCAVLRDLARVAVSQL 348 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 + R ++ M E R+ LA + W + E+ + Sbjct: 349 DRND---EDSREPVDAERVQAQAAMREVFETAERMVGLAAAD----VVWVSESEKGYR-- 399 Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK---------- 480 H + V L ++ I+TSATL +F + GL + Sbjct: 400 -SIHVAPLSVGGLLRENVFAQS-TTILTSATLCIGGNFLAIARDVGLSPRGQIEGDAPEV 457 Query: 481 ----AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 G R V + SPF++ +QG + + R P D E+ + V Sbjct: 458 FETQMGWRGVDVGSPFDYSKQGILYVGRSLPRPGRDG---IAPEVLDDLAELV-WAAGGR 513 Query: 537 MLVLFASGRAMQRFLDYVTDL--RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 L LF+S R +++ + +L QG+ + +R A R+ L G S Sbjct: 514 TLGLFSSQRNAVAAAEHMRSAMPDIPVLCQGEGH----LADLTRRFAADPRTCLFGTVSL 569 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 +G+D+ GD V I ++ FP D P++ + ++ F S A+ L Q Sbjct: 570 WQGVDIPGDTCRLVVIDRVPFPRPDDPLMAARSKAVEDAGGNGFMTVSAGHAALLLAQGA 629 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKK 705 GRLIR G V + D RL+T YG L ++P + E+ G +++ Sbjct: 630 GRLIRRADDRGVVAVLDPRLVTARYGNFLRASMPPFWTTTDREMAVGALRRL 681 >UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXW2_SYNWW Length = 681 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 150/706 (21%), Positives = 284/706 (40%), Gaps = 44/706 (6%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 +++ +PD+ R Q + V+ L+ +E L EA TGVGKT +YL+P + Sbjct: 12 YFESSGPMEQLLPDYKFRQEQVNLTVAVSAALSDQE--FLLAEAGTGVGKTFAYLLPAVL 69 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALAS 129 + +E + +V++T ALQ Q+ +DLP +K++I D A GR ++C + + Sbjct: 70 WSLQENEKVVIATRTKALQQQLIERDLPDVKRVIKADFTCAEAKGRENFLCWNKYINILA 129 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 + Q+ + P GD + W L+ Sbjct: 130 GKKRLQEGEFEFLQSVLP------WAEQSETGDRKELRLKSALMKH--------WDILAA 175 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDE 249 D+ SC C Y+ +C + +++++++V NHAL+++ ++ + L P+ L++DE Sbjct: 176 DRKSCRKDKCLYHEKCFRLKMIKRLEKSQIIVTNHALLLSDVQVDNRLL-PEYHYLIIDE 234 Query: 250 GHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCE 309 H L A D L M +DL L + + + + H Sbjct: 235 AHSLDREAFDKLSMRFSSGDS-----MDLLEYLQKAYLPHIKELSSVDRELLGECLTHIS 289 Query: 310 ELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLND 369 +L+ + LN + + E + E + E+ + + Sbjct: 290 MAVKLLKEYFSALNRPLSSKNGYEATLVIKAADLE----KTWFLEALEIHQDWQDSINLL 345 Query: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 L + + +++R + + ++ + S + + W E + + Sbjct: 346 LKNLKKLEECMGGVEESEELSRVIISLQEEADHAYQINEEHSFQSDMLVWLDCERGKVKA 405 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK---EKAGDRFV 486 + ++ +L+ L+ + +++ SATL F GL E+ + + Sbjct: 406 ---VSSSPVCIASELQNRLYHKLESLVMVSATLAVEERFDYFLNKFGLSQLQEEERLKTL 462 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 SPF++ +Q ++ +E + ++A Q+ L+LF S + Sbjct: 463 LEKSPFDYKKQAGYILLDDMP---ARDEPDYQEKLAG-ILSQIIDITGGRTLILFTSRQQ 518 Query: 547 MQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 ++ + ++ LLVQ + + + +++ RSV++GL +F EG+DLKG Sbjct: 519 LKDIAGIIRPYCEQRQVKLLVQNEDGGFETL---KEQYTAHPRSVIMGLDTFWEGIDLKG 575 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 DLL + I K+ F D P ++ + LN+ F LP A L Q VGRLIR Sbjct: 576 DLLKCLVIIKLPFRSPDEPFCQAWEKYYQQLNQSGFSRFLLPDAVIRLKQGVGRLIRGEN 635 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 G +VI D RL +Y K L++LP + + K+ Sbjct: 636 DRGAIVILDARLGKSSYSKVFLNSLPFKNPRVLSCMQFTQELKKWV 681 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 155/715 (21%), Positives = 267/715 (37%), Gaps = 45/715 (6%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 +A + + +P+F R Q +M+ + + L E + IEA TG+GKT YL+P Sbjct: 231 QTVADKTALMTKALPNFEERPAQFKMMDTIWQAL--HEQKECVIEASTGIGKTAGYLLPA 288 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTAL 127 I AR K + +ST LQ+Q+ ++LP ++KI+ + G Y+ Sbjct: 289 IVYARTVHKKIAISTYTSYLQEQLVEEELPKIEKILGTKVNICVLKGMQHYIDLDRFEQS 348 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + D + Q G L G + + R++ Sbjct: 349 MAYADESYD-------DTFSILQILVWLTKTETGVLSELNVSG-----GGQLFLEKIRKI 396 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 DK + A + A+ +V NHA+V++ + + + V+ Sbjct: 397 PNDK--------PSKGFDFYEQALKNSAFADCIVTNHAMVLSDLVRQTP-IFTQIDGWVI 447 Query: 248 DEGHHLPDVARDALEMSAEITAPWY---RLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 DE H A E+ T Y ++ T L E + K + +RL Sbjct: 448 DEAHQFIQAAMQQDEIVFSYTQWKYIFGQIGTMEDTGLYQLFCEAAKKKQRVSMQSLQRL 507 Query: 305 NAHCEELY----ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 +AH L E I + M + + E E +++KLT+ Sbjct: 508 DAHFIRLQRAFDETIQRAAQSMQQQMKGKRASSKCTLFIEDVTLAKESFLQVSKLTQQWL 567 Query: 361 GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA 420 LA D + L + E + K+ + SS + W Sbjct: 568 DLATEAAQGFENNIEQLDKNDRYILSEWHYW---IREVKIKIAEWEDIFLSSHDGSSVWL 624 Query: 421 TREEREGQLHLWFHCVGIRVSDQLERLL--WRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 + R L V+ +E++L R I+ TS TL + + G+ Sbjct: 625 EFDVRSVPGSLHVFKKPANVTPIIEQVLAPLRKQASIVWTSGTLMVPGNERFVTRQLGIS 684 Query: 479 EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 + + L +P + K I + ++E++I +A + V Sbjct: 685 DS--VEVIKLQAPPAYYAGAKAFIVTDMPDIQHVSQEEYIEAVAHAITRTV-RMTEGRCF 741 Query: 539 VLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 VLF + +++ ++ + D ML QG R+ K +VL G SF Sbjct: 742 VLFTAQDMLRKTVELIQDSELLDDYMLFAQGVTGGSRM--RILKSFQKFSHAVLFGTNSF 799 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+ GD L+ V + ++ F + PV + L + R F SLP A Q Sbjct: 800 WEGVDVPGDALASVIVVRLPFSSPEEPVFKARAKHLTAQGRNSFTELSLPEAIMRFKQGF 859 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTK 709 GRLIRS G ++ D+R+ +K+YGK + ALP +++ ++PE + + K Sbjct: 860 GRLIRSSQDKGAFIVLDRRITSKSYGKEFIKALPPIDVKKLQLPELLKELNHWQK 914 >UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0F4_9ACTO Length = 640 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 167/707 (23%), Positives = 278/707 (39%), Gaps = 84/707 (11%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 L ++ + + RA Q+QM+ VA LA E + I+A TG GK+ YL Sbjct: 9 DLLDEVVSSFGG--------SARAGQQQMVRTVASALA--EDKIALIQAGTGTGKSFGYL 58 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNL 124 +P + ++ ++V+TA +ALQ QI KD P + + +P +K A G Y+C + Sbjct: 59 VPVMQRVANTKERVIVATATLALQRQILEKDAPCVNEHLPKPVKVAALKGWNNYLCLHKV 118 Query: 125 TALASTEPT--QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 + E DL+ F + +E + + G RD + D Sbjct: 119 EGGYAEEYALFPSDLVDFAPKTSSATGKEIVR-----VREWAKQTDTGDRDDLKPGVSDQ 173 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKN 242 +WR++S CL C EC +AR EA VV+ NHA++ SE + + Sbjct: 174 VWRQVSVPSNECLGSTCPLRDECFPALARERATEANVVITNHAVLGIHATSENKMC-GEF 232 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 LV+DE H L + + A + + T + Sbjct: 233 DALVVDEAHDLMRIVHSQATLRLHPGAAVTK---------MRWAGRLAGVATTAVETSLQ 283 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 L E E + P+E+ + + L ++ Sbjct: 284 GLEKVLEGFSEGLLRTR----------------------PEELQDAMRLLDTEVRLVLSS 321 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 D +EK + ++ ++ L ++ + W T+ Sbjct: 322 INTSDKDAAEKKLA------TGVVAELAEFLDAWDRPV-------------ESMITWVTQ 362 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE-KA 481 + + +CV + VS + L+ +++TSATL+ SF L G+ ++ Sbjct: 363 RDEDPA---VLNCVPLDVSAPIAFNLFSE-KAVVLTSATLKLGGSFGPLASEVGVYRVES 418 Query: 482 GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 V + SPF+ +QG + + P + + + GML LF Sbjct: 419 ELEMVDVGSPFDPAKQGILYVAAELPAPPRSGVSEEQLQTLLRLTE----ASGGGMLGLF 474 Query: 542 ASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 +S RA Q+ DY+ + L +L+QG+ LV+ R+ ++ LVG S +G+D+ Sbjct: 475 SSKRAAQQAADYLRESTDLPVLLQGEDQLSNLVQEFRE----DSQTCLVGTMSLWQGIDI 530 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 KG V + +I FP PV+ + + PF+V SL AS + Q GRL+RS Sbjct: 531 KGPNCRLVVMDRIPFPVPSDPVIEARNDEAARKGQNPFQVVSLSHASLLMAQGAGRLLRS 590 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKE 706 G V + D RL TK YG + +LP +P EV G +K+ Sbjct: 591 VDDQGMVAVLDSRLATKPYGMFIRKSLPQLWPTTSIEVAVGAMKRLA 637 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 151/738 (20%), Positives = 275/738 (37%), Gaps = 52/738 (7%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + Q + + ++ PR Q+ M +V + +L +EA TGVGK++ Sbjct: 273 PSVTEIDQAFSVDGLIGSMYENYEPRIEQKIMAEEVLSAFS--TSNNLVVEAGTGVGKSM 330 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRGR 117 +YL+P A + ++T AL DQ+ K+LP+L K + +LK A G Sbjct: 331 AYLVPAAVTALRNNIPIGIATKTNALLDQLVYKELPMLAKALEAEGAGELKHVALKGFSH 390 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y C R ++ + S ++ + T D+D K D Sbjct: 391 YPCLRRISHVVSDGAHMVEIAGQQYSQATSIAAILSYIEQTEYDDIDALKLD-------- 442 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYR-ECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 ++T CL + C ++ C ARR+ + A VVV NHAL + ++ Sbjct: 443 -YRTLPRYAITTSSRECLRKRCPFFGTYCFVHGARRQAEHAHVVVTNHALFFRDLAADGN 501 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAE---ITAPWYRLQLDLFTKLVATCMEQFRPK 293 L P ++DE H AR AL ++ + + RL + + +E+ +P Sbjct: 502 LL-PHAKFWIVDEAHGAEAEARKALAINLDAQEMLRLAGRLTTEDAKRNAFVRLERRKPV 560 Query: 294 TIPPL--------AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEV 345 ++ E+ + E L + + + ++ Sbjct: 561 DSGTQPEASTLFYSLTEKAKKRGRDFGEKAEILAKRMKDLVKVAPKENNKNYDTFEVWIN 620 Query: 346 LEI-----CQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS 400 +I + L AE ++ +E D + Q A + +A++ Sbjct: 621 DDIRLTPEFKGLQGYGRDFVDAAEKLISSGNEIIAFLDDMD-GVAENQREIASIVIDAKN 679 Query: 401 KLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSA 460 L ++ + A + ++ + + +L+ L+ ++ SA Sbjct: 680 MLQACETILGPADLRYVYSARVCRKPERVAESLEAQIVDIGQELDETLYERTQSVVYASA 739 Query: 461 TLRSLNSFSRLQEMSGL--KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHI 518 T+ + F + GL E + + L S +++ ++ + EP N +++ Sbjct: 740 TISISDDFQAFNQALGLNASEASRSKECLLGSSYDYNHHMRVFVLNDMPEP---NNARYM 796 Query: 519 AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPRYRLVE 574 A + + + ML LF + R M++ D + L L+ Q V+ Sbjct: 797 ARLQDMLLR-AHLAQQGSMLTLFTNRREMEQCFDAVNPELKANDLRLVCQKWGVS---VK 852 Query: 575 LHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN 634 R + L L+SF EG D G L V I K+ F P+ + + Sbjct: 853 GLRDDFLADKHLSLFALKSFWEGFDAPGATLRGVIIPKLPFAKPSDPLSCERS----ARD 908 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 R + LP A + Q GRLIR+ G +++ D+RLLTK YGK L++LP I Sbjct: 909 RSAWAHYVLPKAVIEVKQAAGRLIRTATDEGVLILADRRLLTKGYGKSFLNSLPSTNITM 968 Query: 695 PEVPEGIVKKKEKTKSPR 712 + E I +++ Sbjct: 969 CSIDELIEHLLDESTQAE 986 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 156/709 (22%), Positives = 280/709 (39%), Gaps = 60/709 (8%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q +M+ V +E H AIEA TGVGKTL YL+P IA E +V+ST Sbjct: 259 RNQQIKMMDAVYDYFTSDETSHFAIEAATGVGKTLGYLLPLAYIASVEN-PVVISTYTTL 317 Query: 88 LQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELT 146 LQ Q+ KD+ L I+P ++ + Y+ + Q+ E+ Sbjct: 318 LQKQLLDKDIVQLNTILPFTVQAAILKSKNHYIHLTKFEEVLKEPVDQK-------VEVI 370 Query: 147 PNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECP 206 + GDLD W ++ +Y E Sbjct: 371 YQMKLLTWLTETETGDLDELNLTNYNHL--------FWNKVRHRGWLTRPEEDRWYDEDF 422 Query: 207 FFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE 266 + A+ +I+ A V++ NH+ + + + P L++DE HLPDVA +A Sbjct: 423 YVHAQHKIKHASVIITNHSFLCHDLNRKEKEL-PSIGKLIVDEAQHLPDVAMEASSEIFG 481 Query: 267 ITAPWYRLQL----DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNIL 322 ++L + + + T ++ E + + L + ++ N L Sbjct: 482 YYRMQQIIKLIGRASEEKSFLGRITQLSQQLTKIEVSYIENMEMNIFSLEDELSDFINQL 541 Query: 323 NLYMP----------------AGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 LY +E A+ + +VL + ++ L E+ Sbjct: 542 LLYCKNTAGNKHSQQEQMDIQFNRETHWNLALKKASKKVLTLMNEISYLG------YEVV 595 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 L+E+ R L + FE+Q + ++ Q + W + +E+ Sbjct: 596 NQGLNEQHQLTQKERY--LFEDFFDVISTFESQKDI--FYAVFQENEENEVTWFSYKEKS 651 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + + S ++ L P+I+ T ATL SF+ + G + + + Sbjct: 652 PKNSFTIKRSKVDSSKFIKEKLVDKTPYILYTGATLEINQSFNYFETQLG---EENLKEL 708 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 ++SP+++ +Q ++ +P+ ++++++ + +E+ +VLF S Sbjct: 709 IIESPYDYKKQARLWVPKELKPIKGLSKKEYVHMVVEQVGNIIENSV-ENTMVLFNSYEM 767 Query: 547 MQRFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 +Q + + LL QG + KR +L+G SF EG+DL G Sbjct: 768 LQEVYFSLQQNPVASGRELLAQGFSGSR---DRMLKRFFRSTGGILLGADSFWEGVDLPG 824 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 LS + I ++ F D P V + +L+ + PF + SLP A+ L Q +GRLIRS Sbjct: 825 KSLSIIVITRLPFESPDRPFVKAKHRYLEQKHLNPFTIDSLPKATLRLKQGLGRLIRSEK 884 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKS 710 G +++ D RL+ +YGK+++ +LP PIE+ K + + Sbjct: 885 DKGVMIVLDNRLIQTSYGKQIVSSLPKGLPIEEVATKNMGEKLRHFLNT 933 >UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_COMTE Length = 699 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 187/731 (25%), Positives = 295/731 (40%), Gaps = 89/731 (12%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 AQ+ A AL P F PR Q +M VA+ + EEG L +EA TGVGKT +YL Sbjct: 13 EAVAQVFAQQGALSLAEPAFTPRPGQTRMALAVAQAI--EEGGVLVVEAGTGVGKTYAYL 70 Query: 66 IPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNL 124 +P + + ++VSTA ALQDQ++++DLP L + L+ GR Y+C L Sbjct: 71 VPALL----SGQRVLVSTATKALQDQLFARDLPRLVHGLGLPLRMARLKGRSSYLCTERL 126 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 + QD L E+ GDL + + Sbjct: 127 ERVRQGRTAPQD-----PQVLRAVADVERWARVTRTGDLAELT--------ALDERSPVM 173 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME---SEAVLPDPK 241 +S+ K +C+ +C +++ C AR++ EA+VVV NH L+ A ++ S P Sbjct: 174 PLVSSTKDNCMGSDCPHWQGCHVNQARQQALEADVVVVNHHLLFADLDVRDSGMAHLLPN 233 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 ++V+DE H L D+ + +LV + R + Sbjct: 234 TGVVVIDEAHRLNDIGVQFAGEALSS------------QQLVGYARDALRMTQEHARGMA 281 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRG 361 + L C L + + L G R A + + L+ + A L + + Sbjct: 282 DWL-VLCATLEQAMRELRLQAGKPPVGG-----RLAWQAVTPQGLDAVKWRAALVRLGQS 335 Query: 362 LAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWAT 421 L L + S + ++ RL+ ++ L RLA A + +W Sbjct: 336 LRALLIPLSSLEGAGAELQRLYERGAEL------------LARLARFAAPADDECVRWLE 383 Query: 422 REEREGQLHLWFHCVGIRVSDQLERLLWRSI-----------------PHIIVTSATLRS 464 G +L + ++ +++ L + I TSATL + Sbjct: 384 V----GAQYLRMLESPLSIARIMQQRLLQRSLEDAGTDQGEEPDSSRKKAWIFTSATLGN 439 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 S E GL+ G + + ++SPF++ Q + +P +P ++ A Sbjct: 440 DAQLSWFVESCGLR---GAQVLQVESPFDYHRQAGVYVP----QPFAAAGSAQHSQQVAQ 492 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL-----RLMLLVQGDQPRYRLVELH-RK 578 + LVL + +A+ + L +LVQG+ P+ L++ Sbjct: 493 LVLDAAQRIGGRTLVLTTTLKALHAISASLRTSLGLFADLDVLVQGEAPKLALIQRFMAA 552 Query: 579 RVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 G +VLV +F EG+DL GD+L V I K+ FPP D P+V L+S+ R F Sbjct: 553 GAVAGRGAVLVASATFWEGVDLPGDMLQLVVIDKLPFPPPDDPLVEARSRLLESVGRGAF 612 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI--EQPE 696 LP A+ L Q GRLIRS G +VI D RL+T YG L+ ALP + QPE Sbjct: 613 HDYMLPEAALALKQGAGRLIRSEADRGVLVICDSRLMTMGYGAELMSALPPMRVLGSQPE 672 Query: 697 VPEGIVKKKEK 707 + + K Sbjct: 673 FEAALEQLSAK 683 >UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 RepID=B6BV17_9PROT Length = 640 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 156/717 (21%), Positives = 280/717 (39%), Gaps = 89/717 (12%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M L + ++ R Q QM + +++ + + + IEA TG+GK Sbjct: 1 MLDKPNFFDHFFDEKGPLASHLSNYQKRDGQVQMAQFIDESVTLK--KTVVIEAGTGIGK 58 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 TL YL+P + + K +++STA LQ+Q+ KD P+L+K + + + GR Y+ Sbjct: 59 TLGYLLPLV----RQNKKIIISTATKNLQEQLLEKDFPILQKALKLNFNVSILKGRSNYL 114 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C + + ++ D F D E G Sbjct: 115 CHHRINNHSKMFFSKADASIFSDVEGLLK-----------------KTNTGDVAELKKNF 157 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL-- 237 ++ +++ +CL +C + +C ARR AEV+V NH L + +E Sbjct: 158 SGNITHAVTSTSENCLFGDCKFSNDCFVNKARRRAHSAEVIVVNHHLFFSDFFNENDDAN 217 Query: 238 -PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 PK+ ++V DE H+L D+A L S ++ LD + + Sbjct: 218 NLLPKSDVIVFDEAHNLIDLA--MLYSSKVFSSLKLNRVLDDLINHLKNSV----IGLEN 271 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 I R N +L +L+ ++LY + ++ L Sbjct: 272 FSMIFNRYNFSISQLLDLVKDEPQKISLYK------------------LSQLTTFKDHLI 313 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 E++ L EL K + I ++N + + L ++ S Sbjct: 314 EIMNNLEELINAI---KEPGFINKDIDASIKELNNFIEL---------LKNIINPSEKKN 361 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W + + H + V + + ++ TSAT+ + N+F ++++G Sbjct: 362 ALWLEK----FNNSISIHITPVDVKGIFSKTTASN-DSMVFTSATMTTNNNFDYFKDLTG 416 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 LK+ +SPFN+ + + IP P+ + + + A K + Sbjct: 417 LKD---IETRVFESPFNYEKNALLHIPMGLPNPNEKDFFSSLVDYAYPAIKLNK----GR 469 Query: 537 MLVLFASGRAMQRFLDYVTDLR------LMLLVQGDQPRYRLVELHRKRVANGERSVLVG 590 L L S +++ + + L +L QG P L+E + N + VL+G Sbjct: 470 TLFLTTSLNGVEQVANQFEFINNRNADTLNILRQGMLPNQLLIEEFK----NSQNCVLIG 525 Query: 591 LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL 650 SF EG+DL GD L+ + I K+ F D P+V + L + F +P + + Sbjct: 526 SFSFWEGIDLIGDNLTLLIIDKLPFKSPDDPIVDAKINLLNE--KDFFMKSQIPMTTLLM 583 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP--EVPEGIVKKK 705 Q +GRLIR+ G ++ D R+ K YGK++L +LP F + + +V I + + Sbjct: 584 KQGMGRLIRNFSDKGVAILGDNRIQKKYYGKQILKSLPPFQLVEDYNQVLNFIEELR 640 >UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23_CATAD Length = 706 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 170/736 (23%), Positives = 262/736 (35%), Gaps = 118/736 (16%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 T L + A +AL R Q M VA +L ++ HL ++A TG GK+ Sbjct: 11 TPTDDLTPLLDAAVEAL-----GGQTRPGQIAMAKAVAASL--DDRVHLLVQAGTGTGKS 63 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-----PDLKFTAAFGRG 116 L+YL+P +A K ++V+TA +ALQ Q+ + DLP L I + F GR Sbjct: 64 LAYLVPALAH----HKRVIVATATLALQRQLVAHDLPRLAAAITPLIKREPAFALLKGRN 119 Query: 117 RYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 YVC + A+ +P Q D E R + G RD Sbjct: 120 NYVCLNKVEGGAAEDPGQD---VLFDPLAVGKLGAEVLRVREWV----EETESGDRDDLS 172 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 + D W ++S CL C ++ +C A+ + A+VVV NHAL+ A V Sbjct: 173 PGVSDRAWAQVSVSARECLGSKCQFFEDCFAEQAKELARSADVVVTNHALLAIAAMDGDV 232 Query: 237 LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P++ +++DE H L + A TA R Sbjct: 233 QVLPEHDAVIVDEAHELVNRVTSAATGELTKTAVERA---------------HHRTDKFV 277 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 A L + E + E RF G + + L Sbjct: 278 KEATAANLAVATLDFTEALE-------------NTPEGRFQRG--------LPEELGMAL 316 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 LR + L +LS+ G + R + A + ++A Sbjct: 317 VALRDASRSALTELSKNKGGDLDMDGARKQARA--------ATEAVHQVAERVLEGAEQD 368 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 W R E +G + + + + L ++ P +++TSATL+ F+ + G Sbjct: 369 VVWLERSEFKGIKNSTLKIAPLGIENLLRYKMFARTP-VVLTSATLKLGGDFTGVAGSVG 427 Query: 477 LKE-----------------------------------------KAGDRFVALDSPFNHC 495 L R + + SPF++ Sbjct: 428 LHGTERVELDFKPELPEEIYDAAVKLLREGDSDGEEFLDTVQNLPQYWRALDVGSPFDYP 487 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 +QG + + R P D +M A L LF+S RA Q + + Sbjct: 488 KQGILYVARHLDPPGRDGIRDDQLDMLADLMDNA----GGRTLGLFSSMRAAQTAAEKLR 543 Query: 556 -DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIA 614 + L +L QG+ L+ ++ A + L G S +G+++ G L V I +I Sbjct: 544 TKIDLPILCQGEDSLAELL----RKFAEDPETCLFGTLSLWQGVNVPGASLQLVVIDRIP 599 Query: 615 FPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 FP D PV E + F S A+ L Q GRLIR+ G V + D RL Sbjct: 600 FPRPDDPVSAARTEAVGRSGGNGFMAVSASHAALLLAQGAGRLIRAIDDKGVVAVLDSRL 659 Query: 675 LTKNYGKRLLDALPVF 690 TK YG L ++P F Sbjct: 660 ATKPYGSFLRASMPAF 675 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 407 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 164/741 (22%), Positives = 269/741 (36%), Gaps = 70/741 (9%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + A Q + + +F PR Q M V K + E +L +EA TGVGK++ Sbjct: 255 PSDADIVQAFSETGLVGSLYEEFEPRIEQVAMAEAVRKAFSSSE--NLLVEAGTGVGKSM 312 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-------PDLKFTAAFGR 115 +YL+P AR + V+T L DQ+ +LP L+K + P L + G Sbjct: 313 AYLVPAALTARANNIAVGVATKTNTLLDQLVYHELPALEKALRLADPDRPSLTYAPLKGF 372 Query: 116 GRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHT 175 Y C R + + + +EQ + L L + D Sbjct: 373 SHYPCLRKIGHIVEEGA-----------QTKLFGNKEQTQAPSLAALLSFIEQTEYDDMD 421 Query: 176 DIAIDDDLWRR--LSTDKASCLNRNCYYYRE-CPFFVARREIQEAEVVVANHALVMAAME 232 + ID + R ++T CL R C Y+ C +RR + A++VV NH+L+ + Sbjct: 422 SLKIDYRVLPRRLITTTANDCLRRKCPYFGTSCFVHGSRRRAEAADIVVTNHSLLFCDLV 481 Query: 233 SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAE---ITAPWYRLQLDLFTKLVATCMEQ 289 ++ L P V+DE H AR A +S IT R+ D ++ V E+ Sbjct: 482 ADGGLLPP-IRYWVVDEAHGAEAEARRAFSLSLSAEDITRLANRVGADEASRNVFVRAER 540 Query: 290 -------------FRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRF 336 F T + + E + L G E + Sbjct: 541 RVVVPGMEEGSSLFYALTGKARSAGKAYADAAREFSAHLKDLLFFDQNKKGKGYEIVELW 600 Query: 337 AMGEL-----PDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNR 391 ++ +V + + + E L + + + L E G+ +I R Sbjct: 601 INSDVRSSATFAQVESYGRAMTEAAEKLVRVCQELVGYLEELEGAAEIQR--------EI 652 Query: 392 ALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRS 451 A E + ++ + + AT ++ ++ + I V + + L+ Sbjct: 653 ASTAMELKDQMNAADIILDRAPETYAYAATLSRKKDRVAEKLEALLINVGEAMNETLFER 712 Query: 452 IPHIIVTSATLRSLNSFSRLQEMSGL--KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEP 509 + SATL + F + GL E + + LDS ++ + + EP Sbjct: 713 THSTVFASATLAVDDKFDAFESALGLNASEHSTCQMCKLDSSYDFDAHMTVYVASDMPEP 772 Query: 510 SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQG 565 + E V ++ ML LF + R M+R D + L ++ Q Sbjct: 773 N----EAAYLAALQRLLVDVHRAQNGSMLTLFTNRREMERCFDEVQPQLKVDDLRVVCQK 828 Query: 566 DQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 V+ R E L L+SF EG D G L V I K+ F P+ Sbjct: 829 WGVS---VKGLRDDFLADEHLSLFALKSFWEGFDAPGATLKGVVIPKLPFAKPTDPLSCE 885 Query: 626 EGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLD 685 + LP+A Q GRLIR G +++ D+RLLTK+YGK L+ Sbjct: 886 RAARDDQ----AWRRYVLPAAVLETKQAAGRLIRKADDTGVLILADRRLLTKSYGKAFLN 941 Query: 686 ALPVFPIEQPEVPEGIVKKKE 706 +LP I+ E + + Sbjct: 942 SLPSRTIKVMTAAEIVADLER 962 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 407 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 146/708 (20%), Positives = 273/708 (38%), Gaps = 45/708 (6%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 R Q +M+ + +E + + +EA TG GKTL YL+P +A A K +V+STA Sbjct: 273 LEFRPTQSKMMNSIYNNYTHDEPKSMIVEAGTGTGKTLGYLLP-LAYAAYPDKKIVISTA 331 Query: 85 NVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 LQ QI + + L ++P +L G Y+ S + Sbjct: 332 TNLLQQQIAQRTMKQLNHLLPFELNGVVIKGNSHYLDLAKFVHSLSIVEDSDYIQLI--- 388 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 + GDLD + A + + L + +Y Sbjct: 389 ----KAKILVWLLKTTSGDLDELNLN--------AQRSPYFAEIRHQGVKTLREDNEFYN 436 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEM 263 + ++++ A V++ NHA ++A + + + LV+DE HL + Sbjct: 437 DDFLIRRQKQLHTANVIITNHAYLVAHA--QELGDGTRRPYLVVDEAQHLSESILRRSRQ 494 Query: 264 SAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI----PERLNAHCEELYELIASLN 319 + + + R + + LV+ E+ A+ E L L E + Sbjct: 495 TLDFQS--IRTAIHVLENLVSDNQERNLANIFEEHALGKYNVELLRDDLRSLSEATDAFQ 552 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF---------LNDL 370 L + + + E P + ++ L + + L + L L Sbjct: 553 QALYRQFMLNVQGNNSNELIEQPLDNQQLFSLLTPSNKPIMQLEQALASVQFHFMALRHL 612 Query: 371 SEKTGSHDIVRLHRLILQMNR-ALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 E+ + L+ Q + + +A +KL + + G W T ++ Sbjct: 613 FEQQADRWLFSDRYLMSQFQSQWMVLADADNKLHQFIETLEERGEAAAFWLTVQQSAEHS 672 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 + + V+ L ++ + ATL + + + L E L++ + Sbjct: 673 SMRLSGGLLAVNHFLTENVYPYFAQPLFVGATLFTSSRSNYLYEQLDLEKDRTLQK-RFA 731 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 SPFN+ E+ ++++ + P+ N E++ +A + ++ + ++LF S +++ Sbjct: 732 SPFNYAERAELLVAKDAPIPNQTNNEEYTRYLAQTIYQLCKNNQ-CQTMILFNSLVTIEQ 790 Query: 550 FLDYVTDLRLM----LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLL 605 + + L +L QG R + K+ A+G S+L+G SF EG+DL L Sbjct: 791 VYSQLKETDLFDQRDILAQGITGRREKL---LKQFASGTSSILLGASSFWEGIDLPKSSL 847 Query: 606 SQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 + I ++ F + + LK + PF +LP A+ L Q +GRL+R+ +G Sbjct: 848 ELLIITRLPFDSPNEIMTRAHNNLLKREGKNPFYHSALPKATMRLQQGIGRLLRTPNDFG 907 Query: 666 EVVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEKTKSPR 712 VI D R+ T+ YG +L LP PI++ E + K+ K R Sbjct: 908 VGVILDSRISTRRYGSSILKNLPKDLPIKELPTTELVESAKKFLKKYR 955 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 158/769 (20%), Positives = 271/769 (35%), Gaps = 92/769 (11%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 ++A + + + + P+F R Q M V + G++LA+EA TGVGK+++ Sbjct: 299 SSAEIREAFSSAGPVGKIYPEFEARDEQVTMAEAVNDAFS--TGKNLAVEAGTGVGKSMA 356 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRN 123 YL+P + A++ T+ V+T AL DQ+ +LP L + + + + G Y+C R Sbjct: 357 YLVPAVFTAQKNGITVGVATKTNALLDQLMHHELPRLSSAVGGISYCSLKGFSHYLCLRK 416 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 + L T P + + E + L G L + D + +D L Sbjct: 417 VERLMQTGPHMKTVQD-----------RELSQAPALAGVLSFIEQSEYEDIDGMRVDYRL 465 Query: 184 WRR--LSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 R ++T CL + C +Y + C +R + + A++VV N L+ + ++ P Sbjct: 466 MPRYEITTTSHDCLRKKCPFYGQRCYVHGSRFKAEAADIVVTNQTLLFCDVAADG-GLLP 524 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL-------------DLFTKLVATCM 287 V+DE H+ AR AL S E+ R Q KLV Sbjct: 525 SIRYWVIDEAHNAEGEARRALGSSIELDELARRAQRVSPSSAMGQTIFDQAERKLVGKID 584 Query: 288 EQFRPKTIPPLAIPERLNAHCEEL------------------------------------ 311 A + ++L Sbjct: 585 ANEDAFASTVTADLDETALLRDDLTLKSQNDPISGQTGLSGGDTLLFALSGKAKRAGDAF 644 Query: 312 ---YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL--EICQRLAKLTEMLRGLAELF 366 + L + + + + + D+V E+ Q L+ L +E Sbjct: 645 ACAVDEFTQAAESLLYFDTSSRSKSYDLVDIWINDQVRSSEVFQSLSTAGHALVDASEKL 704 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 + E G + V+ +Q + A + + + + ++ Sbjct: 705 IKACQEMVGLMEDVK-GAAAIQRDIASMALYLKDVINSIELIVFEGSDTFAYSVQLARKK 763 Query: 427 ---GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 + + + V ++L L+ I+ TSAT+ N+F GL E+ Sbjct: 764 NTYSRRSEKLDALMLNVGNELAERLYARTHSIVFTSATMTIANAFDSFFTALGLSEEGER 823 Query: 484 RFVAL--DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLF 541 V L S ++ E KI + EP+ + + L LF Sbjct: 824 ATVHLQLGSSYDFDENMKIYVVEDMPEPN----DARYLAALEQLLIDIHRASAGSTLSLF 879 Query: 542 ASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEG 597 + R M+R + L ++ Q V+ R E L L+SF EG Sbjct: 880 TNRREMERAHSTVQAALKGDGLRVVCQKWGVS---VKGLRDEFIADEHLSLFALKSFWEG 936 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRL 657 D G L V I K+ F P+ + ++ + LP A Q GRL Sbjct: 937 FDAPGATLKTVVIPKLPFSKPTDPLSCARAQ----MDAQAWSHYVLPQAVIETKQAAGRL 992 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKE 706 IRS G +++ D+RL+TK YGK L ++P I E + + Sbjct: 993 IRSAHDTGSLILADRRLVTKGYGKVFLKSMPSRNITILSAREVVAALSQ 1041 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 152/727 (20%), Positives = 251/727 (34%), Gaps = 40/727 (5%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 + A + P + PR Q M +V L G H IEA TGVGK++ Sbjct: 265 PSREEIEADYAPGGLVNRMYPTYEPRDEQIAMALEVRDALV--TGTHRVIEAGTGVGKSM 322 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCP 121 +YL+P AR T+ ++T + L DQ+ +LP L + + L F A G Y C Sbjct: 323 AYLVPFAEAARRNNITVGIATKSNNLADQLMYHELPKLAEQLDGGLSFCALKGYDHYPCL 382 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L ++ + + T + + + DG D I Sbjct: 383 RKLERMSRGQV----------EITTKRDPADTLTAVAVIMAYVCQSADGDLDSLGIRWRS 432 Query: 182 DLWRRLSTDKASCLNRNCYYY-RECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 +T C R C ++ +C ARR A+VVV NH+L+ + +E P Sbjct: 433 VNRPDFTTASRECARRLCPFFPDKCLVHGARRRAAHADVVVTNHSLLFRNVAAEGR-ILP 491 Query: 241 KNLLLVLDEGHHLPDVARDALE--MSAEITAPWYRLQLDLFTKLVATCMEQF--RPKTIP 296 V+DE H + AR +SA+ + + T ++ + Sbjct: 492 PIRHWVIDEAHSIEREARRQWARVVSADESRVLFERLGGSSTGALSQVSRDLATSEGSTL 551 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 L + + + IA + + + + A + E+ E L Sbjct: 552 YLGLTAKATSTVARASMAIADVFDGVRELG-RRARGGYDNANLWIGPELRESDDWHDFLP 610 Query: 357 EMLRGLAELFLNDLS-EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 + L D S + +++ + ++ +L + + Sbjct: 611 SAYAAIDVLEQADKSVDALVQAVAADKPEVVVDLGDISRRLHELAENLKL--IIDGTDEH 668 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMS 475 R I + + L + I SAT+ SF Sbjct: 669 YVYSLQVNRRLRAGGESMTAERIDIGEALATEWLPEVHTAIFASATMTVSKSFEHFNHAV 728 Query: 476 GLKE--KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 GL + + LDS ++ +V+ +P + E ++ + Sbjct: 729 GLDRIGASTSSSLHLDSSYDFDSNMAVVVAGDIPDP--RDRESYLTAL-ERVLFDAHLAM 785 Query: 534 HLGMLVLFASGRAMQRFLDY----VTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLV 589 +L LF + R M+ + L L Q R R R N S L Sbjct: 786 GGSVLTLFTNRRDMEDLYARVEPKMARAGLELNCQQRNSSPR---RLRDRFINEPTSSLF 842 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 L++F EG D G+ L V I K+ F P+ + SLP A Sbjct: 843 ALKAFWEGFDASGETLRCVIIPKLPFSSPTDPLSCERNLREDR----AWARYSLPEAVLE 898 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTK 709 + Q GRLIRS G +++ D RL+TK YGK+ L +LP ++ E + I + + Sbjct: 899 VKQAAGRLIRSSTDCGVLILADPRLVTKGYGKKFLTSLPTSSYQRIESAQ-IGHYLQLWR 957 Query: 710 SPRRRRR 716 + RRR Sbjct: 958 ARHERRR 964 >UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C098_XYLCX Length = 696 Score = 405 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 164/701 (23%), Positives = 259/701 (36%), Gaps = 75/701 (10%) Query: 31 QRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQD 90 Q M +V + + +EGRHL ++A TG GK+L YL+P + A + ++VSTA +ALQ Sbjct: 40 QHAMALEVVEAI--DEGRHLLVQAGTGTGKSLGYLVPAVRHAVVADERVIVSTATLALQR 97 Query: 91 QIYSKDLPLLKKII-----PDLKFTAAFGRGRYVCPRN-----------LTALASTEPTQ 134 Q+ ++DLPL+ + + G Y+C L L P + Sbjct: 98 QVITRDLPLVADAVAPQLPRPPRIALLKGWHNYLCLHKTGGGYPVDDATLFDLPGITPGE 157 Query: 135 QDLLAFLDDELTPNNQEEQKRCA---KLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK 191 + ++ A + G RD + D WR++S Sbjct: 158 SATEHPAEAPGRARREDGAASLADQVRRLHAWAHETDSGDRDELVPGVPDRAWRQVSVTS 217 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGH 251 CL + C EC AR +EA+VVV NHA++ S + P++ ++V+DE H Sbjct: 218 LECLGQRCPLLAECFPERARAAAREADVVVTNHAMLGI-AVSGSPGVLPEHGVVVVDEAH 276 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 L D A A + +T + +L T L+A +EL Sbjct: 277 ELADRATSAATVDLSLTTIEHAARLARRHAAAETT----------------ALDAAAQEL 320 Query: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS 371 LIA P G + R A+G + D + E+ R + Sbjct: 321 GSLIAQAPA---GSFPLGLPEDLRTAVGAVRDALRELLTRTKPDPPQGGAAPDGGAKM-- 375 Query: 372 EKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 +LQ+ A+ + ++ P W G Sbjct: 376 ----------AQSAVLQVYEVAERMAAEDSSSDVLWCSRPGDGPGAGW-------GDGVS 418 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL----KEKAGDRFVA 487 H + V+ + L I TSATL F + GL + R V Sbjct: 419 RLHAAPLHVAGLIRAGLLAETTG-IFTSATLALGGQFDAVAGSLGLGRTDDDGGRWRGVD 477 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 + SPF++ QG + + R P + +E+ L LF+S RA Sbjct: 478 VGSPFDYPRQGILYVARHLPAPG---RDPATDAQLDEIAGLIEAA-GGRTLGLFSSRRAA 533 Query: 548 QRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + + + L + +L QGD LV ++ A + L G S +G+D+ G Sbjct: 534 NAVAEAMRERLDVPVLAQGDDQLPTLV----RQFAQDPATCLFGTISLWQGVDVPGPACQ 589 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V I +I FP D PV ++ F S A+ L Q GRLIR+ G Sbjct: 590 LVIIDRIPFPRPDDPVKAARARAVEKAGGNGFMAVSATHAALLLAQGAGRLIRATEDRGV 649 Query: 667 VVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKE 706 V + D RL T YG L ++P +P + +++ Sbjct: 650 VAVLDPRLATARYGTFLTRSMPNFWPTTDGRIVREALRRLA 690 >UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG21_KOSOT Length = 835 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 150/728 (20%), Positives = 286/728 (39%), Gaps = 61/728 (8%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 + + L++ + + R Q ++A+++ G++G + IEA TG GK+L+YLIP Sbjct: 143 VFSEGGLLEDILEGYEYRQEQFMTALEIAESIEGKQG--IMIEAGTGTGKSLAYLIPSAY 200 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCPRNLTALA 128 + + + +VVST LQDQ+ KD+ ++KK+ + +L+ GR RY C + Sbjct: 201 YSISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELRVWTLKGRERYFCLKKY---- 256 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 ++ + K +L G L G D ++ + ++ R + Sbjct: 257 ------------FEELEYAVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENRNRFT 304 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM------ESEA-----VL 237 + CL + C ++ CP++ +R Q A++V+ NH+L+ + E + Sbjct: 305 ATRFECLRKLCPFFNRCPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGM 364 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSA--EITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 PK +L++DE H L +A+ + R ++ + + F Sbjct: 365 LLPKFKVLIVDEAHELEMSLTEAMSFNLVPHEAVSTIRKAINCSKDALRSIRNHFERSF- 423 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 L L + A + IL + + +E+ + + + +L Sbjct: 424 --------LEELWGRLRKFTAEIEKILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGEL 475 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAP 415 +++ + + L + L + L R Sbjct: 476 YTIIQRFRAVLIQLLRMVEEVAEEEETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDG 535 Query: 416 VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS----LNSFSRL 471 + R HL I+ +DQL ++ +P + SATL + F+ Sbjct: 536 RVVYVRRTVTNNGNHLIITSAPIK-NDQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYA 594 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 + + GL E + L S F+ EQ K I + + N +++ + A + ++ Sbjct: 595 RRILGLNES--FHAIKLGSSFDFQEQLKFYIVKDMAKY-QPNNREYLNQGANLISEMLKI 651 Query: 532 KKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL 591 K +VLF S + M + +++ L + +Q +P + + V N E SV+ G+ Sbjct: 652 VK-GSAMVLFTSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHV-NSENSVIFGV 709 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL-KSLNRYPFEVQSLPSASFNL 650 +SF EG+DL G+ L + I K+ F D P++ + P Sbjct: 710 RSFWEGIDLPGEHLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYYPKMITAF 769 Query: 651 IQQVGRLIRSHGCWGEVVIYDKRLL--TKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 Q +GRLIR+ G +V+ D R++ K Y ++LL +L +V ++ Sbjct: 770 RQGIGRLIRTRNDRGVLVVLDNRIVDGNKIYSRKLLRSLSP------DVKINVIDGSRVI 823 Query: 709 KSPRRRRR 716 R+ RR Sbjct: 824 SELRKLRR 831 >UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borrelia RepID=B2S179_BORHD Length = 685 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 162/719 (22%), Positives = 292/719 (40%), Gaps = 77/719 (10%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 I F+ R Q +MI ++K E L IEAPTG GK+L+YLI I ++ Q+ ++ Sbjct: 14 NIKGFVKRNTQLRMIKKISKAFENE--NFLVIEAPTGTGKSLAYLIAAIDFIQKTQEKVI 71 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 +STA++ LQ+Q+ KD+ L+K+IP ++F G Y+C R L L T Sbjct: 72 ISTASINLQEQLIKKDIETLEKLIPFKMRFGVIKGMRNYLCLRRLEELEKNLLT------ 125 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 GD D + ID+ +W +S +C C Sbjct: 126 -YTFNKKHLEALIYWTQNTKTGDRDELHF----------IDEQIWEEVSASPETCSGITC 174 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAME--------------------SEAVLPD 239 +C F AR++I E ++++ NH L++ + E L Sbjct: 175 PDENKCFFKKARKKILECDIIITNHHLLLNDLYIKNEILTEKENYENGSEKNYEEINLIL 234 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 P +++DE H+L + AR + + K + T +++ K A Sbjct: 235 PNVKNIIIDEAHYLEEAARTLFSKNFS----------RIGIKQIFTKIDKIIKKQNINGA 284 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + +E + + + P+ + + + Q + E Sbjct: 285 YKKNFEIETMLSFENVEYIIK-IQKDFPSIYRITNDTHKTDFYIRIKTHLQNIIYNLENY 343 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + + ++ KT ++ RL + I + F ++++ W Sbjct: 344 KVSITSIIQNMENKTAKIELERLIKNIEYKESLIKNF-----------ISENQYDNFCFW 392 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 + F GI + +L +++++ + II TSATL SFS +GL Sbjct: 393 IE----NKKNIPIFKTSGIYLGPELNKIMYKRVKRIIFTSATLMINQSFSYFINQTGLNL 448 Query: 480 KAGDRFV-ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGML 538 D + L F + E+ + + +P+ E+ + + + ++ V K G L Sbjct: 449 INQDIEMEKLPYSFPYKEKSILTVTSDIEDPNKA--EEFLNQSIQYIKELVILNK-GGTL 505 Query: 539 VLFASGRAMQRF----LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSF 594 +L S ++++ D++ + + L +QG+ P++ L+ +K + ++SVL+G+++F Sbjct: 506 ILLTSFKSLEYIGKNIKDFLRENNINLFIQGELPKHELINSFKK---SPKKSVLIGMKNF 562 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+D+KGD L+ V I K+ F P++I + N F ++LP A Q Sbjct: 563 WEGIDIKGDKLTMVIIPKLPFQTPSDPILIAKNALATKSNENFFTQETLPQAIMKFKQGF 622 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRR 713 GRLIR +G +V +DKR+ K YGK L +LP K + Sbjct: 623 GRLIRDSKDYGIIVCFDKRIFEKTYGKLFLQSLPEIKTYYLNFENIKHTINTFFKEIEQ 681 >UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS05_9BACT Length = 652 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 168/697 (24%), Positives = 267/697 (38%), Gaps = 59/697 (8%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 + + F R Q ++ V L G GR LA EAP GVGKT + L P Sbjct: 1 MTDLFGPDGLFCNNLSGFEYRPQQERLSQAVLGLLEGNSGRILAAEAPPGVGKTFALLAP 60 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + A+ T++V T+++ LQ+Q+ +KDLP L +++ D+ F GR Y C R + Sbjct: 61 AVTWAKTTGNTVLVLTSSITLQEQLINKDLPTLSEVLGLDVPFGLLKGRSNYACMRKASE 120 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 L L +D+ + + +GDL + R Sbjct: 121 LGDEG------LLSFNDKGEASGVILEWLALTEEGDLSEV---------PLPPGHPAVER 165 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 +S CL C Y C A R VVVAN+ L + L++ Sbjct: 166 ISGSFRGCLGARCPYRDRCFVQRALRNASRWTVVVANYHLYFSYALGRGGAFPVPARLVL 225 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 DE H +P+ A +S + L+ L + L + LN Sbjct: 226 CDEAHRMPEAASSVSAVSTRMDDWIRHLRRVPSPGLNELGAKTVGYDQQKTLDDVKSLNR 285 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 +E + S L++ EL E L++ A + R + Sbjct: 286 AVRLFFERLDSSGIKNGLFIE---------PPEELVREGLDVLDLAAPVIATGRRFSSYL 336 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 + + R + + + + + +R L S T W Sbjct: 337 DDL------GPSGEEMARDGAEYLAWVQVLDEMGQAFRWC-LDVSDYPDWTYWKE----- 384 Query: 427 GQLHLWFHCVGIRVSDQLERLL-WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 + D L R P+++ SAT+ F +GL+ D Sbjct: 385 ---DGALSSAPSKCGDILPRAFGGDDPPYMVAVSATMAVDGRFDYWSRETGLE---PDEA 438 Query: 486 VALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGR 545 + LDSPF EQ ++++ + + + + + + + + LVL +S R Sbjct: 439 LLLDSPFPLSEQMELLVVDLGIAVTDEKYDDRVCRVVRKL----CKENGGASLVLLSSTR 494 Query: 546 AMQRFLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 ++R Y+ +L+QGD P+ L+ +R E SVLVG SF EG+D+ G Sbjct: 495 LLKRVGGYLRRCSGDGYNVLIQGDLPKVELL----RRFREDESSVLVGTVSFREGVDVPG 550 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 D L+QV I +I FP D P+ F LP+A +L Q VGRLIRS+G Sbjct: 551 DSLTQVIIDRIPFPHPDDPIQRARR---DLEGPSSFVKSVLPNAKMHLRQAVGRLIRSYG 607 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 G V + D RLL++ + +LD+LP PI + V + Sbjct: 608 DRGRVAVLDGRLLSRRNWR-VLDSLPDVPIRKIRVVD 643 >UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n=12 Tax=Actinomycetales RepID=Q47MW9_THEFY Length = 706 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 166/717 (23%), Positives = 255/717 (35%), Gaps = 96/717 (13%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 R Q M VA + E HL ++A TG GK+L YL+P + A T+VVSTA +A Sbjct: 51 RDGQATMARSVAAAIDSRE--HLVVQAGTGTGKSLGYLVPALRHAVAANATVVVSTATIA 108 Query: 88 LQDQIYSKDLPLLKKIIPDL-----KFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ+Q+ +DLP L + + L + GR Y+C L+ A T + D Sbjct: 109 LQNQLIGRDLPRLTEALEPLLGRRPVYAILKGRRNYLCRYRLSQAA----TGPEEAELFD 164 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN-CYY 201 L + + +R + G RD + D WR++S C+ C Sbjct: 165 PHLLSSLGRQVRRLH----EWAEETLTGDRDDLTPGVSDLAWRQVSVGANECIGPQMCPV 220 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 +C +AR E A++VV NHAL+ L P + LL++DE H L D Sbjct: 221 SDDCFAELARAETIGADLVVTNHALLAIDAVQGYRLL-PDHDLLIVDEAHELVDRVTSVA 279 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 + R + + + ERL + L ++A Sbjct: 280 TGVLSDRSISLA---------------AKRAAPVCDVELTERLAETADGLALMLADTP-- 322 Query: 322 LNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR 381 P + + LA +R A L+ L E D Sbjct: 323 --------------------PGRLDHLPDPLATAVAAVRDAAHACLSALPEPP--RDDPH 360 Query: 382 LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVS 441 L ++ L W R + + V+ Sbjct: 361 AASARRLALAGLEEVHCTAERILLCVQQPLRDRQDVVWF---ARGARQTPGLRIAPLAVN 417 Query: 442 DQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL------------------------ 477 L + L+ ++TSATL SF + GL Sbjct: 418 RTLRQALFTE-RTTVLTSATLALGGSFDLMARQWGLGPLPDHDPAEAAEPAETTATPSAE 476 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMAAFFRKQVESKKHLG 536 R + + SPFNH G + I P ++ +++ EMA Sbjct: 477 PSPLRWRAIDVGSPFNHARSGILYIATHLPPPGRESLHPEYLDEMAELI-----DAAGGR 531 Query: 537 MLVLFASGRAMQRFLDYVTD-LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 L LF+S RA + + + L +L QGD LV+ + A E + L G S Sbjct: 532 TLGLFSSTRAAVHAAEELRERLPYPILCQGDDSTGHLVQ----QFAADEATCLFGTLSLW 587 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 +G+D+ G L V + +I FP D P+ + + F + A+ L Q G Sbjct: 588 QGVDVPGPALQLVIVDRIPFPRPDDPLASARQRAIGAQGGNGFLEVAATHAALLLAQGTG 647 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKSP 711 RL+RS G V + D RL T YG L +LP + P+V +++ + S Sbjct: 648 RLLRSVHDKGVVAVLDPRLATARYGAFLRASLPPYWGTTDPQVARAALRRLHEAASR 704 >UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD43_9ACTO Length = 646 Score = 398 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 174/713 (24%), Positives = 269/713 (37%), Gaps = 79/713 (11%) Query: 3 LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTL 62 ++A L A+ Q+ PR Q M A+ A L E+ +HL ++A TG GK++ Sbjct: 1 MSADLVEASGRVLDAVVAQMGG-SPREGQASMCAEGAAAL--EDRQHLLVQAGTGTGKSV 57 Query: 63 SYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL-----KKIIPDLKFTAAFGRGR 117 YL+P + VVSTA +ALQ QI KD P++ LK G Sbjct: 58 GYLVPLLTHCAMNGVRGVVSTATLALQRQILVKDAPVVVDAVASATGARLKVAVLKGWSN 117 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y C L TE T + D E K +++ + G RD Sbjct: 118 YACLHKLDGGYPTEGTLFE----DHDMSVGPTGELGKEILRIREWISETT-TGDRDDLVP 172 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL 237 + D WR S K CL ++C EC AR E +A+VVV NH+L E L Sbjct: 173 GVSDRAWRHASVAKPECLGKHCPLIDECFAQAARLEAADADVVVTNHSLFGINACGEGEL 232 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 + +V+DE H L D R + + Sbjct: 233 F-GEYDAVVIDEAHELADRVRSQAAADLTVARV-----------------------SRVA 268 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 ++ L+ +L E A L ++ E P +++ Sbjct: 269 RSLRSNLSIDSTDLEEAGAGLGAAMSPLEEGLLEYR--------PSALVDAM-------I 313 Query: 358 MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT 417 +L G A +++SE G L R ++ +G +A + Sbjct: 314 VLDGAARRASHEVSEAQGEPAAKLLAR--AAIDELIGALDAWGR----------DPDQSI 361 Query: 418 KWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 + T++E + + + VS + I+TSATL +F + G+ Sbjct: 362 AYITKDESD---NARLTVGPLDVSAAIGGNGIGE-RPAILTSATLAIGGNFDFMAAQVGM 417 Query: 478 -KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLG 536 + + SPF+H QG + P D + ++ G Sbjct: 418 AVSGVPWHGIDVGSPFDHGRQGIRYVATHLPLPGRDGPSEE----LLDELVELAQASGGG 473 Query: 537 MLVLFASGRAMQRFLDYVTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFA 595 ML LFAS R + + L + +QG++ +L++ R+ S LVG S Sbjct: 474 MLALFASRRGAMAGGQALRERTDLTVYLQGEETLAQLIQRFREE----RDSCLVGTMSLW 529 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 +G+D+ G V I KI FP D PV ++ F SL A+ + Q VG Sbjct: 530 QGVDVAGAACRLVVIDKIPFPRPDDPVSRARSMDVERRGGNGFVSVSLTHAALMMAQGVG 589 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEK 707 RL+RS G V I D R++TK YG ++ +LP +P PEV G +++ K Sbjct: 590 RLLRSTDDRGVVAILDPRVVTKRYGGFIMRSLPAMWPTTDPEVVRGALRRLAK 642 >UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M767_9BACT Length = 639 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 163/696 (23%), Positives = 269/696 (38%), Gaps = 63/696 (9%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 I L +P+F R Q ++ +++ L +E R A EAPTG GKT + ++P Sbjct: 1 MEDIFGSDGLLSMGMPEFEVREGQGELADAISQFLLSDE-RVFAAEAPTGTGKTYAVMVP 59 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + A+ + L+V T++V LQ+Q+ KD+P L+ + +L+ GRG Y C R Sbjct: 60 AMLWAQRYGRRLLVLTSSVTLQEQLADKDIPALQAALGLELRCCLLKGRGHYACLRK--- 116 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 L+ D+ + ++ + ++ + G ++ + + R Sbjct: 117 ----------ALSLGDEGFLSFDGDDGQLSQRIVAWSGETE-TGDLAELSLSANHPVLAR 165 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 + + +CL + C C + A R E++VVV+N+ A P P L+V Sbjct: 166 IVSSHQTCLGKLCPCRDRCFYRRAMRRASESDVVVSNYHKYFAYRLDGEEFPIP-CDLIV 224 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA-IPERLN 305 DE H + AR +S+ + L V + +E + LA + L Sbjct: 225 CDEAHAMSASARSVAAVSSRRGEWDH--VLRHVPPAVKSLLETSEGDSEKALADVLTSLR 282 Query: 306 AHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAEL 365 A EEL+ + + P + +LT LAE Sbjct: 283 AQAEELFLYLQLPQPENSPNNPYSDR----------------VLASGGELTGGASRLAER 326 Query: 366 FLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 L+ + + ALG+ + +L + S W Sbjct: 327 VLSH-------PPAEDDEGNLPAVQWALGLSDMARRLNQC--CDTSRWPEWAYW------ 371 Query: 426 EGQLHLWFHCVGIRVSDQLERLL-WRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 H C + + + +L P I+ SAT+ F+ +GL D Sbjct: 372 --HDHESLKCSPVTGAPMISEVLDTPDAPKIVAVSATMTVDGKFNFWAAETGLW---PDE 426 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 + SPFN EQ + + + V + +A++ + + + + + Sbjct: 427 TRIMPSPFNLSEQMSVHVVDLGVRVMDREYGERVAKVCRRYCVRNKGATLVLLSSRRLLE 486 Query: 545 RAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + + +L QGD+P L+ RK +GE VLVGL SF EG+D+ GD Sbjct: 487 SVAGYLKGHASADGYCVLAQGDKPSAELLAQFRK--NDGEAKVLVGLASFREGVDVAGDA 544 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L+QV I +I F D P+V F LP A L Q +GRLIRS Sbjct: 545 LTQVIIDRIPFSHPDDPIVQARRAL---EGGKYFTAVELPGAKMRLRQAMGRLIRSKTDH 601 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 G VVI D R+ K K +D+LP P+++ V Sbjct: 602 GRVVILDSRITQKQQWK-FIDSLPPAPLKRVVVKTA 636 >UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_DELAS Length = 724 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 184/771 (23%), Positives = 279/771 (36%), Gaps = 122/771 (15%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M A A L F+PR Q +M VA+ + E+ + L +EA TGVGK Sbjct: 1 MHSLTAAVQAAFAPQGLLSRAEALFLPREGQTRMALAVAQAI--EQRQTLVVEAGTGVGK 58 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYV 119 T +YL+P + + ++VSTA ALQDQ+Y++DLP L + L+ GR Y+ Sbjct: 59 TYAYLVPALL----SGQRVLVSTATRALQDQLYARDLPRLVAALGMPLRMARLKGRSAYL 114 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C L + QD L E+ GDL + Sbjct: 115 CMERLERVRQGRTAPQD-----PQVLRSVALVERWARTTRTGDLGELP--------ALDE 161 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL-- 237 +++ + +CL +C ++++C VARR EA+VVV NH L+ A ++ Sbjct: 162 RSPALPLVTSTRDNCLGSDCPHWQDCHVNVARRAALEADVVVINHHLMFADLDVRESGVA 221 Query: 238 -PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIP 296 P ++V+DE H L D S QL + + V ++ Sbjct: 222 QLLPSVGVVVVDEAHQLNDTGVQFAGQSLS------GQQLTGYARDVLRAGQELARGMAD 275 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLT 356 + + R+ EL A R + + L+ + L Sbjct: 276 WMQLSARVEQALRELR------------LAAGKPPAGGRLPWQGVTPQGLDAQRWRTALV 323 Query: 357 EMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV 416 + R L L + + ++ RL ++ L RLA+ A ++ Sbjct: 324 TLGRSLRALLEPLVQLQVSDPELRRLFERGNEL------------LRRLATFAAAAVQDT 371 Query: 417 TKWATREEREGQLHLWFHCVGIRVSDQLERLLW--------------------------- 449 +W G + + ++ + L Sbjct: 372 VRWLEL----GSQQMRMLESPLTIAHIMRTRLLGLTQEQEGSEDQEREDAQPEPEPQEQE 427 Query: 450 ----------------RSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFN 493 S I TSATL S E GL+E + + +DSPF+ Sbjct: 428 EGAPAPVHEAAGLPRQPSGTAWIFTSATLGDDERLSWFTEPCGLRE---AQVLRVDSPFD 484 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 + Q + +PR P + A + LVL + RA+ D Sbjct: 485 YARQAALYVPR----PFAQAGSATHSTEVARLALDAAQRLGGRTLVLTTTLRALHAIGDA 540 Query: 554 VTDL-----RLMLLVQGDQPRYRLVELHRKRVAN--------GERSVLVGLQSFAEGLDL 600 + L +LVQG P+ L+E G +LV +F EG+DL Sbjct: 541 LQQSLGLFGELDVLVQGQAPKLALIERFIAAGEGREGTGASPGRGCILVASATFWEGVDL 600 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 GD L V I K+ FPP D P+V L+S+ R F LP A+ L Q GRLIR Sbjct: 601 PGDALQLVVIDKLPFPPPDDPLVEARSRSLESVGRQAFADYMLPEAAMALKQGAGRLIRR 660 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSP 711 G +V+ D RL T YG+RL ALP E V+ + P Sbjct: 661 ETDRGVLVVCDSRLATMGYGRRLRAALPPMRTLVDEAA--FVQALQALAQP 709 >UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL9_BEUC1 Length = 679 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 173/690 (25%), Positives = 253/690 (36%), Gaps = 70/690 (10%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVA 87 RA Q +M VA ++G L ++A TG GK+L+YL+P I A + ++VSTA +A Sbjct: 44 RAGQHEMALAVAHAF--DDGVPLLVQAGTGTGKSLAYLVPAIVRAVTSDERIIVSTATLA 101 Query: 88 LQDQIYSKDLPL----LKKIIPDLKFT-AAFGRGRYVCPRNLT--ALASTEPTQQDLLAF 140 LQ QI +KDLPL L+ +P G YVC +T A EP L Sbjct: 102 LQRQILTKDLPLARGVLEASLPRPPAVALLKGWHNYVCRHKVTGGYPAEDEPGLFSLDGG 161 Query: 141 LDDELTPNNQEEQKRCAK---LKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR 197 D E + + + G RD + + WR++S CL + Sbjct: 162 ADHPRRSAEVGEFETLGEEVVRLREWAEETTTGDRDDLVPGVGERAWRQVSVTAMECLGQ 221 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA 257 C EC ARR + A+VVV NHA++ + P++ LV+DE H L D Sbjct: 222 KCPMLAECFPEAARRASRSADVVVTNHAMLGI-AAGGSPGVLPEHDGLVVDEAHELADRV 280 Query: 258 RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIAS 317 + + + L Sbjct: 281 TAQATVELS---------APAVERAARIARRHAGAALAGLDDAAQALRTGL--------- 322 Query: 318 LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSH 377 G E R G + + L LR A ++ L Sbjct: 323 -----------GLVPEGRLPDG--------LPESLVGTVTTLRAAAHEGMSALGPNPPGS 363 Query: 378 DIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVG 437 L++ + L + E +L A + W R Sbjct: 364 -TDGAGALVMARSALLVLVEIADRLLSDAVAQRRD----VLWCERGRDGAS---RLRVAP 415 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + V+ + L ++TSATL SF+ + GL A R + SPF++ Q Sbjct: 416 LDVAGLVATHLVAD-RAAVLTSATLELGGSFAPVASSLGLATGAY-RAERVASPFDYARQ 473 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 G + R P D EM A + V++ L LF+S RA + + D Sbjct: 474 GIRYVARHLPRPGSDGPS---QEMLAELAELVQAA-GGRTLGLFSSRRAAEVAAQEIRDR 529 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFP 616 L +L QG+ LV +R A E + L G S +G+D+ GD V I +I FP Sbjct: 530 TGLDVLCQGEDVLPTLV----RRFAEEEATSLFGTLSLWQGVDVPGDSCRLVTIDRIPFP 585 Query: 617 PIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLT 676 D PV E + + PF + A+ L Q GRL+R G V I D RL T Sbjct: 586 RPDDPVGAARMEVVAARGGNPFMTVAATHAALLLAQGAGRLLRRTTDRGVVAILDSRLAT 645 Query: 677 KNYGKRLLDALPV-FPIEQPEVPEGIVKKK 705 YG+ L +LP +P P V + + Sbjct: 646 ARYGEFLSRSLPPMWPTTDPAVARAALVRL 675 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 154/696 (22%), Positives = 280/696 (40%), Gaps = 37/696 (5%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 F RA Q +M+ V + L IEA TG GKTL YL+P +A E+ +++ST Sbjct: 261 FAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSYLATPEK-PVIISTV 319 Query: 85 NVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 ++ LQ+Q+ KDLPL +I L+ Y+ + A + +PT Q A Sbjct: 320 SIVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQCFKATLN-QPTPQKQYALYQM 378 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 + GDLD + ++ W+ ++ L++ Y Sbjct: 379 GVL------VWLLETETGDLDELQLT--------NLNHLFWKEVTHRGLDFLSKKDELYE 424 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEM 263 +++ ++ V++ NHA + + L P++ L++DE HHLPD+A Sbjct: 425 VDFLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLL-PESPWLIIDEAHHLPDIASRMASE 483 Query: 264 SAEI----TAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 + ++ + + +QF + + L +E + + L+ Sbjct: 484 RVNSVILKKQVTHFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFELH 543 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 + + E + + ++ ++ ++L + L + S Sbjct: 544 RLFSKTQKRIDHQELLLTKERIDY-LSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLE 602 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 + R F+ ++ S+ P +W + + H + Sbjct: 603 TFSLADRIVFVRLFQFFDEIERIHHCFSIYLDDWRP--RWVKEYLPQNEDHGLIEIHDLE 660 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 S E + II TS TL+ N+ L + GL E F L +P+N+ E + Sbjct: 661 ASLLPETKWYPRYERIIYTSGTLKFGNNKKYLPQRLGLTEVT---FKTLPTPYNYAENAR 717 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA----MQRFLDYVT 555 + +P V + + ++ K + + MLVLF S + + Sbjct: 718 VYVPEEAVAIQNASSYEMGQYISDTIEKLMAQ-EERSMLVLFTSHELLSTVYHQVQPRLL 776 Query: 556 DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF 615 + +L QG + KR +NG+ +VL+G SF EG+DL G L + + ++ F Sbjct: 777 EKGQEVLAQGISGSREKI---LKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPF 833 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 P+V + +L++ PF +++P A+ L Q +GRLIRS G ++I D+RL+ Sbjct: 834 ENPKRPLVQAKYAYLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLV 893 Query: 676 TKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKS 710 T YGKRL+ A P +++ +PE + + KE Sbjct: 894 TAKYGKRLIKAFPKGLSVKEAPMPEILEELKEFLNK 929 >UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCJ4_9GAMM Length = 643 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 152/705 (21%), Positives = 271/705 (38%), Gaps = 79/705 (11%) Query: 9 AQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPG 68 ++ A + Q P+F+ R Q+QM V +++ ++ L +EAP+G GKTL+YL+P Sbjct: 8 DELLAAGGPIDRQWPEFVAREGQQQMAIRVQQSI--DDQVSLLVEAPSGSGKTLAYLVPI 65 Query: 69 IAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDL-KFTAAFGRGRYVCPRNLTAL 127 + A+ ++STA+ LQ Q++ DLPL++ ++ K GR Y+CP L Sbjct: 66 VMTAQR----AIISTASRYLQSQLFKHDLPLIQGLLGSHRKVALLQGRSNYLCPYYLDKN 121 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 ++Q+ D + +R G + L + Sbjct: 122 TLRLRSEQESSGGYDRQSYQQLTRLSQRFRN--------TGIGELSLLAPELAPGLLPHV 173 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLL 244 ++ + CL+ C + CP AR++ + A++V+ NH+L+ + P + Sbjct: 174 TSSRDDCLSTQCPDFSRCPLMAARQQAEGADIVIVNHSLLFSDQVMRKEQLGSLLPSAGV 233 Query: 245 LVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL 304 +V+DE H + D A+ + + L + V+ ++ P+ L+ E+L Sbjct: 234 VVVDEAHRISDFAQTIVGLRLSSG------TLKSLCRDVSRAIQVGAPEQRLILSRLEKL 287 Query: 305 NAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAE 364 + +L I S Q + + ++ L + Sbjct: 288 QSGLSKLDAHIPSAKPYHRQ-------------------------QHVDVINQLSIALRQ 322 Query: 365 LFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 L + K H V+L + L + L W E Sbjct: 323 LRRDLNIVKQRDHSFVQLEIRTGLIVDRLNEIVSYKGL---------------CWVQGRE 367 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + + +S ++ L +S I TSATL +S R + + GL Sbjct: 368 NG----FVIQTIPLTISLLIKELFQQSPCSWIFTSATLTVNSSPDRFKRVLGLDA---VN 420 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 F S + Q + P++ V+P D + E + +L LF+S Sbjct: 421 FYQASSDIDFQRQAMLYTPKIPVDPRKDEFYDYYVEQLLPLLAAAK----GRVLCLFSSY 476 Query: 545 RAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHR--KRVANGERSVLVGLQSFAEGLDLKG 602 R + + +L+Q R V+ ++ ++ N + +L+ SF EG+DL G Sbjct: 477 RGLNATASRLRRKGKAVLIQRSPRDPRRVDNYKLVAQLKNQPQGILLATGSFWEGVDLSG 536 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 LS V I K+ F D P++ + L F LP A L Q GRL+R Sbjct: 537 FPLSAVAIDKLPFAHRDDPLIQLRSQELSGHGVDSFSEYLLPDAIVRLRQGCGRLLRRVS 596 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFP--IEQPEVPEGIVKKK 705 G ++I D RL ++ YG+ + +LP + E+ + K Sbjct: 597 DRGVIMIADPRLQSQAYGQDFMASLPSMRRAVTVSEIESFFSESK 641 >UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8P3_9BACT Length = 646 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 162/692 (23%), Positives = 266/692 (38%), Gaps = 59/692 (8%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 L ++P+F R QR++ + L + R LA EAPTGVGKT + LIP Sbjct: 1 MEDFFGPEGILNARLPNFEYRRQQRELAEKIENFLQSD-RRLLAAEAPTGVGKTYAMLIP 59 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTA 126 + A T++V T+ + LQ+Q+ KD+P L ++ DL + GRG Y C R Sbjct: 60 AMRWAVANNSTVLVLTSGITLQEQLIYKDIPALLDVLGLDLPYGLLKGRGNYACIRK--- 116 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + E + L F D+ + A GDL + R Sbjct: 117 --AREIGAEGFLDFGGDKGQASRDISGWLYATETGDLSE---------LSLGDTHPARER 165 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 +++ +CL C ++ C + R + V+VAN+ + + + + LL+ Sbjct: 166 IASSYLTCLGPYCPHHERCFYNKVMRSLSHWRVIVANYHVYFSYVLGQRKPFPAPFGLLI 225 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 DE H + D AR ++ ++ + + +R Sbjct: 226 CDEAHKMEDAARAVTQVGVDVRDWQR------LLRRAPRLDKVEASLLRSVDCPADRFAE 279 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 +L + S+ + L +P G+ EL ++ E+ + ++ L L E Sbjct: 280 EVADLSRVSESVFDQLAARLPDGKN--FTAYPPELKNDTAELLVKCDRIIGHLDELQEAA 337 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 + D R+ ++ + W Sbjct: 338 AGGGRDANALQDDGRIAVWNGELTAFRDSLRWC--------CDTQNYPEWAYWRE----- 384 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 + SD + +I SAT+ SF +GL A D Sbjct: 385 ---GGSLKSSCVNGSDLIPPAFDDDEIKVIALSATMTVDRSFEYWANETGL---APDETA 438 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 LDSPF+ +I + + ++ +A + + ++ + + R Sbjct: 439 VLDSPFDLPSLMEIDVVDLGLQVMSPGYADAVARVCRKYARENGGATLILLSS----RRL 494 Query: 547 MQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 + Y+ RL +LVQGD PR L+EL ++ ERSVLVG+ SF EG+D+ G Sbjct: 495 LTAVSAYLKMNAEKDRLNILVQGDLPRTELLELFKE----NERSVLVGMASFREGIDVPG 550 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 + L+QV I +I FP PV K R F LP A L Q GRL+R+ Sbjct: 551 EALTQVIIDRIPFPHPGDPVGEARA---KLEGRENFVKAVLPGAKMQLRQAAGRLVRTGS 607 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 G VVI D R++T+ K +LD+LP P+++ Sbjct: 608 DRGRVVILDGRIVTRPDWK-ILDSLPAVPVKK 638 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 148/725 (20%), Positives = 267/725 (36%), Gaps = 60/725 (8%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 A ++ + + D+ PR Q+ + + + + +G +EAPTG GKTLS Sbjct: 222 KAPRVSEFFKEGGFISFVVDDYKPRHNQQDFASVMERNMY--KGGLCVLEAPTGSGKTLS 279 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPR 122 YLI A + +++STA LQ+Q++++ +P + KI +L+ GR Y+C R Sbjct: 280 YLITAANKAI-TGERVLISTATRTLQEQLWTEAIPQIAKIYNGELRPAILKGRDNYLCLR 338 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 L T +E + GD++ + + + Sbjct: 339 KFEELLMHPQT-----LLSAEERDSFMALIPWVLSTETGDINE------CNSFSQSRNRV 387 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKN 242 LW +LS + C N ++ CP +A+R+ A +V+ NH+L ++ ++ + L P Sbjct: 388 LWSKLSCSASCCNGENHSHHENCPALIAKRKAMNANMVLVNHSLFLSDLQLDFALL-PSY 446 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 +V DE H LP+++ S +R A A Sbjct: 447 EHIVFDEAHRLPEISNQVFGRSISFFG--FRNIAKTLEPSKAGGDGLIAEIASRIPAEKP 504 Query: 303 RLNAHCEELYELIASLNNILNLYM-----PAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 L+ C++L E + L+ + ++ R + E A E Sbjct: 505 ELHEICDKLSEALGEAEKALHRFFMKIGKKLAKQKNGRSGFTYTNSILAEYEADPATFLE 564 Query: 358 ML---RGLAELFLNDLSEKTGSHDIV-RLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 RG AE + + G IV L + +++ + FE +K R Sbjct: 565 QYNNARGFAEKLVAATANMDGLKGIVSDLDSRMTEISHFISDFEFVTKAGR--------- 615 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 + + H + + + + I TSATL + + Sbjct: 616 NDWVFYMEEPFNP--HTIKLHALPLHSGNVWREKFYPWIKSATFTSATLSVQADLTYFLQ 673 Query: 474 MSGLKE-----KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 G+ + R S + E+ +++ + +PS + + Sbjct: 674 KMGMDNLRLGKQPFVRVYTEQS--DVNERRSVMVAKFLPKPSAPEFGDALNDTLLKVLPN 731 Query: 529 VESKKHLGMLVLFAS----GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGE 584 VE +VLF S +A + +LL Q ++ Sbjct: 732 VEE----NTMVLFTSVATMMKAQAALAPAFAERNKLLLCQHVDGS---LDGLVAMFRKER 784 Query: 585 RSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLP 644 + L+G QS EG+D GD L + I K+ FP P+V +K+ N+ F+ +P Sbjct: 785 GACLLGCQSLWEGVDFPGDALKLLVITKLPFPNPSDPLVAGLTNEMKAANKNFFKDYFIP 844 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKK 704 A L Q +GRL+RS G+V+I D R++ + YGK ++ + + + Sbjct: 845 EAYIELRQGMGRLLRSDSDSGKVLILDNRVVLERYGKTFAR---IWNFKN-RIAGSVSDI 900 Query: 705 KEKTK 709 + K Sbjct: 901 ERFVK 905 >UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1WP29_VEREI Length = 664 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 191/694 (27%), Positives = 317/694 (45%), Gaps = 58/694 (8%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL-AIEAPTGVGKTLSYLIPGI 69 +A Y+AL +P F+ RA Q+ M +++TL + L IEAPTG+GK++ YLI GI Sbjct: 20 VAQVYRALTSVMPGFVARAQQKTM---ISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGI 76 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-----DLKFTAAFGRGRYVCPRNL 124 A A E K LVVSTA +LQDQ+ SKDLPL + + A GR R+ CP + Sbjct: 77 ASAVTEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKM 136 Query: 125 TALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLW 184 A A QDL A DD + R +W G+RD + + W Sbjct: 137 HAFAGGT---QDLFAAGDDHTALTQAVDLWR---------QGQWAGVRDDLPVRLHQRAW 184 Query: 185 RRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMES--EAVLPDPKN 242 R++ ASC + C + CP++ + ++ A V++ NH +++ + + +V D Sbjct: 185 MRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFSDGHK 244 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 L V DE HHL D +A ++ A V + Q P + E Sbjct: 245 CLFVFDEAHHLSDKLLNAFARRLDLAAFPSE---------VIEAIAQLCPGMVGLDFAAE 295 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 R+ + ++ G ++HRF + E+P + +L L+ Sbjct: 296 RVRGIWRACEDAALTM---------LGDGSQHRFTLNEVPPQFR-------RLLLDLKAQ 339 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 L E S+ R + + + +G + + V +W R Sbjct: 340 LSGMRATLKEVKESNARFRNKAVAMLADSRIGQLSGDVQEAIDCIEEFTGDDLVARWLAR 399 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 G+ + +C + + + LW + ++TSATL +L SF ++ GL + Sbjct: 400 ----GRNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATLTTLGSFEPMRIALGLPAETS 455 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + LDSPF++ + ++++PR+ VE S + +A + + KH G+LV F Sbjct: 456 --TLKLDSPFDYG-RARLIVPRLCVEASDPAHSRMVAAFLKD--HALGAAKHRGVLVYFT 510 Query: 543 SGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 S + M + + R +L+QG + ++E H++R+ G RS++ GL S EG+DL Sbjct: 511 SKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVRSIIFGLDSIGEGVDLP 570 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 G+ ++V + ++ FP D PV+ T E+L+S + PF + ++P Q GRL+R Sbjct: 571 GEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPKVGLKFAQVAGRLMRRE 630 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP 695 WGE + DKRL +K YG +++ + P +E Sbjct: 631 QDWGEFYVLDKRLRSKRYGAQIVKSTPFRTMEMG 664 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 139/709 (19%), Positives = 257/709 (36%), Gaps = 41/709 (5%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 R Q +M+ + +E +++ +EA TGVGKTL YL P ++ K +VVSTA Sbjct: 267 LRLRPVQAKMMNSIYNNYTHDEPKNMIVEAGTGVGKTLGYLFP-LSYVAYPDKKIVVSTA 325 Query: 85 NVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 LQ QI + L K++P + G Y+ S + + Sbjct: 326 TNILQQQIIDTSIAQLNKVLPFKMNSVIIKGNAHYIDIARFVHSLSVIEDSKLVQLL--- 382 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 + + GDLD + + + + LN +Y Sbjct: 383 ----KAKILVWLLSTQSGDLDELNLN--------SQQSPYFTEIRHQGIRSLNPVNAFYH 430 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA--RDAL 261 + + + +A++++ NHA ++A + + + LV+DE HL + R Sbjct: 431 DDFLVRREKRLHQADIIITNHAYLVAHA--QELGDGTRRPYLVIDEAQHLSESILKRSRR 488 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 + + + L + + E L + E + Sbjct: 489 TFNFQKLRTAVHVMSGLVNNGNDRNLTDIFAEQALGSYNVELLRGDLNAVEEAVDLFQQA 548 Query: 322 LNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF---------LNDLSE 372 L A + + E P ++ L ++ L + L+ L Sbjct: 549 LYRQYMASATSNPDNELIEQPLRNDQVMSLLDISGPVMMKLEQALSSVQLHFSALSHLFS 608 Query: 373 KTGSHDIVRLHRLILQMNRALG-MFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHL 431 ++ L+ Q L + EA L Q G W T + Q L Sbjct: 609 SQPDRWLLSDRYLMSQFQSQLAKLIEADQTLNEFNETLQQQGEAAAFWITIRQSSEQSAL 668 Query: 432 WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSP 491 + + L + ++ + ATL + L L E+ SP Sbjct: 669 QLSGGLLEATHYLTKNVYPYFAQPLFVGATLFTSPRSPYLYHQLDL-ERNNTLTRRFASP 727 Query: 492 FNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 +N+ + K++I PS N +I ++ + ++ ++LF S +++ Sbjct: 728 YNYKQNAKLLIAEDAPVPSAQNNSDYIKYLSDTIYQLTKNA-DYQTMILFNSLVMIEQIY 786 Query: 552 DYVTDLRLM----LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQ 607 + + L +L QG + K+ + G+ S+L+G SF EG+DL L Sbjct: 787 SQLRETDLFDQRDILAQGITGNRDKI---LKQFSGGKNSILLGASSFWEGIDLPESALEL 843 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 + I ++ F D + + L+ + PF LP A+ L Q +GRL+R+ G Sbjct: 844 LIITRLPFDSPDEIMNRAHNKLLQQQGKNPFYHSELPKATMRLRQGIGRLLRTEDDHGVA 903 Query: 668 VIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEKTKSPRRRR 715 V+ D RL T+ YGK +L +LP P+ + + I ++ ++ + + Sbjct: 904 VVLDPRLQTRRYGKTILSSLPTDLPVNSKKTADLISITQKFLRNGKEDK 952 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 134/703 (19%), Positives = 282/703 (40%), Gaps = 47/703 (6%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 R+ Q +M+ D+ L ++ + +A TG+GKTL YL+P A EE+ +V+STA Sbjct: 253 LEWRSSQIKMMDDINNDLNEKKSKIYIYDAATGIGKTLGYLMPIAYKATEEK--VVISTA 310 Query: 85 NVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 LQ+Q+ KD+ +LK++IP +L G Y+ S +++ Sbjct: 311 TTTLQNQLVDKDISILKEVIPFNLNIVNLKGSQHYIDIDKFYQSLSIPQSKK-------- 362 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 GD++ +++ D ++ ++ LN+ +Y Sbjct: 363 ATQIQMTLLVWLMETSTGDMEELNL--------LSMQDTIFAQIEHHGIRGLNKKSAFYS 414 Query: 204 ECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR----- 258 + A +++ NHA +++ ++ + +L++DE HL D Sbjct: 415 VDFLKRQEILRRHANIIITNHAYLLSHVDKLGG----NDTVLIVDEAQHLNDNLLKENRK 470 Query: 259 ----DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 D +++ ++ QL + + + + + + ++ L E+ Sbjct: 471 TIDFDQIKIISDSLLVKMESQLSFSFRDLVEINFITKAQYTELIRPIQTIDYEIMNLREI 530 Query: 315 IAS-LNNILNLYMPAGQEAEHR-FAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 + LN+ +N E + + + L I +++ K + L+ L F S Sbjct: 531 FMTYLNSNMNKASDVYVEVPIKPLNLIGMIKANLFIFKKIEKALKNLKRLQNKFSQKYSM 590 Query: 373 KTGSHDI-VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVT--KWATREEREGQL 429 + + + +LI + L + ++ K W L + T W T R+ Sbjct: 591 AIVTGRLGLDEIQLINDYQKLLNLLLSEMKSWSYLDLNRLEDELETEFIWLTYPYRQENG 650 Query: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 HL + + + + L +++ +++ A L + + L + D Sbjct: 651 HLRLNFIMLDGENFLNDKVYQKFSTVLLVGANLAMKETRGYMFRQLDLNG--QVKIKKYD 708 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 + F++ +Q + I + + + +++++I ++ K + S + ++LF S ++ Sbjct: 709 NIFDYSKQTRAYILKDTPDITSISKKEYIEYLSHDLEKILLSN-NRQTMILFNSLEIIES 767 Query: 550 FLDYVTDL---RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLS 606 + + +L QG VE +KR GE +L+G +F EG+DL + L Sbjct: 768 VYPKLVKKIGSKREILAQGITGS---VEKIKKRFMLGEGKILLGAGAFWEGIDLPENNLE 824 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V + ++ F D+ + L+ F +LP A+ L Q GRLIR+ G Sbjct: 825 MVIVTRLPFQSPDTVLNKARYRKLEKKGINSFYNLALPEATLRLQQGWGRLIRTPKDKGI 884 Query: 667 VVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKT 708 V+ D R+ KNYG++ + + P ++ ++ + + + Sbjct: 885 FVLLDSRIANKNYGEKFISSFPDGVNLKSLKIDDLLKEITSFF 927 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 151/740 (20%), Positives = 265/740 (35%), Gaps = 54/740 (7%) Query: 2 ALTAALKAQIAAWYKALQEQI--PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVG 59 + A + + + ++ R Q++M V T G+ +E TGVG Sbjct: 298 TVDEAQTKHDFSSAGCVAQMFLSQNYEVRPTQQEMAVRV--TSLQNSGQCGVLEVGTGVG 355 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRY 118 K+L+YL+P ++ A + + V+T AL +Q+ K+LP L ++ P + G Y Sbjct: 356 KSLAYLLPSVSRAVQNDIQIGVATKTNALAEQLIKKELPQLHEVYPKDFSYLIVKGAEHY 415 Query: 119 VCPRNLTALASTEPTQQDLLA--FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTD 176 + L E F ++ +L D L + Sbjct: 416 PYLEGIDTLMREEFDTSQFKDIRFSSSKIKAEILTTAAIIYSACCELVDVDVDSLGIRWN 475 Query: 177 IAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 + D T L+ +Y R Q A +VV NHAL+ + V Sbjct: 476 MIPKGDFVASHRTGSNHTLSTCAPHYML---SELRERTQHAHIVVTNHALLATDIALGHV 532 Query: 237 LPDPKNLLLVLDEGHHLPDVARD--ALEMSAEITAPWYRLQLDLFTKLVATC-------- 286 L ++DE H D RD A E+S ++ + + + T L+ Sbjct: 533 LFPL-VSNWIVDEAHGFADQVRDQWAQELSQDVFSDLFYTLGGIKTGLLGDMFSSSSNSE 591 Query: 287 -MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAG------QEAEHRFAMG 339 + + +L E+L++ + ++ + G Q + Sbjct: 592 QKPLLQKLISKAAVLVAQLRVKNEDLFDCLNTVVLDDRYHFSRGAHTHMIQRVDSSIVSQ 651 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 + + L+ AK + L+ + +S + H V R+ ++ LG+ Sbjct: 652 DAWNAFLDKMSEFAKTFDTLKAVLIQLCKAISNEASLHRDVDFKRVCAYVSSYLGV---- 707 Query: 400 SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 + L Q S R +++ + + + + +L + ++ TS Sbjct: 708 -----ITRLTQGSEDGFVYTVERVKQKKAYQTYLKEMCLDIGKRLYTDWYLDAQSVLYTS 762 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDR--FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQH 517 ATL SF GL DR L SPF++ +++P V P + Sbjct: 763 ATLSIEQSFEYFDHSVGLDRLNSDRVETKTLPSPFDYENHMGVIVPNNLVLPQH----EK 818 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRLV 573 + + + + +L LF + R M+ + L LL Q + + Sbjct: 819 YIQCLSNLLFDIHVAMNGSVLTLFTNRREMEAVSSKLVPRLESHGLTLLEQLPTTSAQQI 878 Query: 574 ELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL 633 + + LV L+SF EG+D GD L V I ++ F P P+V L Sbjct: 879 M---RGFKKDTTASLVALKSFWEGIDAPGDTLRCVVIPRLPFVPPTDPIVEA----LTER 931 Query: 634 NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE 693 + + LP A + Q GRLIR+ G V+I D R+L+K YGK +L ALP + Sbjct: 932 DSSTWWNYVLPRAITEVRQAAGRLIRTQHDSGLVIIADTRVLSKAYGKHVLHALPNVHHQ 991 Query: 694 QPEVPEGIVKKKEKTKSPRR 713 + + K+ Sbjct: 992 EISCENMKSYIQMWRKAHEE 1011 >UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM22_9BACT Length = 850 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 153/730 (20%), Positives = 289/730 (39%), Gaps = 69/730 (9%) Query: 11 IAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIA 70 + + LQ+ + + R Q ++A+++ + +L IE TG GK+++YL P Sbjct: 160 VFSEGGLLQDSMKGYEFRQEQFMTALEIAESIERD--SNLMIEVGTGTGKSIAYLAPVAY 217 Query: 71 IAREEQKTLVVSTANVALQDQIYSKDLPLLKKI--IPDLKFTAAFGRGRYVCPRNLTALA 128 VVST LQDQ++ KD+ +LK + DL+ + GR RY+C R L + Sbjct: 218 ACISTMNQAVVSTRTRILQDQLFKKDVEILKTFPNLDDLRVSVMKGRERYLCARKLFEVV 277 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + + +++ +L G L G D + I +++ R +S Sbjct: 278 NLALNKML---------------DEEMSKELSGILIWSMITGEGDLDPLPIKEEMRRMIS 322 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM----------ESEAVL- 237 ++ C R C ++ CP++V R + +++V+ NH+ + + E E + Sbjct: 323 GNRFDCTRRLCPFFEICPYYVQRENAKSSDIVITNHSFLFSEANIRLSDGDAEEREDIGT 382 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAP--WYRLQLDLFTKLVATCMEQFRPKTI 295 P+ LV+DE H L A+ E R + F Sbjct: 383 LLPRFKYLVVDEAHELEASLTQAMSYRFEPYELAGTVRRLIKTVRDSFGFLKRHFDEGF- 441 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 L +L E A+L+ + E + E+ + L K+ Sbjct: 442 --------LRKLWAKLKEATANLDKQSTELVRVTGSPESGSRITFTGKELEVMIPLLTKI 493 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW--RLASLAQSSG 413 ++ L+ + + D+ + I + + +++ W ++A + S Sbjct: 494 SDTLQTHVYIGTQTMQMLD---DVEDRNEKIDGLEAEVSRILTETREWMKQIAGITSSQE 550 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS----LNSFS 469 + V E R +L + +D L ++ + I SATL + F+ Sbjct: 551 SRVIYVNRLERRPD--NLSIISSPVE-NDTLMASIFPDVSVKIFISATLWVYSRGSDGFN 607 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQV 529 + + G + + V L + F++ +Q K +P + N ++ E A+ Sbjct: 608 YARRILGTS--SNNEAVRLGTSFDYTQQLKFFVPVDLPDY-FPNSLTYL-ESASDITLNA 663 Query: 530 ESKKHLGMLVLFASGRAMQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGER 585 + G +VLF S M+ L ++ D+ + + + D P L + N E+ Sbjct: 664 LNIVGGGSMVLFTSYEDMKWTLSRISGRLGDMSIHIQDREDSPTTILADH-----VNSEK 718 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL-KSLNRYPFEVQSLP 644 SV+ G ++F EG+DL G+ L + ++K+ F D P++ + K P Sbjct: 719 SVIFGARAFWEGVDLPGEQLRLLIVYKLPFERPDEPLIEARIKHYGKRSFVEGMNKYYYP 778 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLL--TKNYGKRLLDALPVFPIEQPEVPEGIV 702 Q +GRLIR+ G V++ DKR++ + Y K+LL +LP Q I+ Sbjct: 779 KMITAFRQGLGRLIRTRNDHGVVIVIDKRIVDPNRVYSKKLLASLPAGTNVQAIASNRIL 838 Query: 703 KKKEKTKSPR 712 ++ + K + Sbjct: 839 RELRRLKREK 848 >UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=Corynebacterium jeikeium RepID=C8RVT0_CORJE Length = 609 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 146/622 (23%), Positives = 236/622 (37%), Gaps = 42/622 (6%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 PR Q++M VA+ + E HLA++A TG GK+L+YLIP IA A + ++VSTA + Sbjct: 20 PRPGQQKMAKAVAEAIDKEH--HLAVQAGTGTGKSLAYLIPSIAAAMDSDYPVIVSTATI 77 Query: 87 ALQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 ALQ Q+ +DLP L K + L+F GRG YVC + + ++ + L Sbjct: 78 ALQRQLVERDLPRLAKALEPELPRPLEFAIQKGRGNYVCLNKVQNAQTESGVEEAEESLL 137 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNR-NCY 200 D + R + G+ + DG RD+ + D WR++S CL C Sbjct: 138 DPSQLSATGAQVARLHEWAGETE----DGDRDNLPQGVSDRAWRQVSVSSRECLGATRCP 193 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 + +C AR +A+VVV NHAL+ +A + P++ +++DE H L D Sbjct: 194 FGEQCFAERARAHAADADVVVTNHALLAIDALVDAPVL-PEHDTVIVDEAHELEDRITSV 252 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI--ASL 318 TA + A + L + E + + Sbjct: 253 ATAELSPTAIAVL------------AKRAAKLAVSGADAAGDELAEAGDRWTEALKAEAA 300 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 + N G E L + + K + G+ + S+K Sbjct: 301 ASRNNDRFGTGIEGRWTGVPEALQVPLAALRDAAWKTNRQVSGIPASEFANDSKKVAERL 360 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG-APVTKWATREEREGQLHLWFHCVG 437 V + ++N S++ S W T + Sbjct: 361 AVIVA--TEELNDTCVRILNASRVGEGTSADDEDLLGEDVIWYTADSGPRAPKHVVRVAP 418 Query: 438 IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQ 497 + V+D L + L+ +I+TSATL F+ + GL + + +PF+ Sbjct: 419 LSVADLLRQRLFGR-NTVILTSATLALGGKFTSMLSCWGLPKSTP--TLDAGTPFDARTH 475 Query: 498 GKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 G + + R P D + A + L LF+S RA + + + + Sbjct: 476 GILYVARHLPPPGRDRASDASVDETARLI----NAAGGRTLGLFSSRRAAEDMAEQLRTV 531 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFP 616 +L+QG+ LVE RK + + L G +G+D+ G LS V I +I FP Sbjct: 532 VPYEILLQGEDSMSTLVEKFRK----NQSACLFGTLGLWQGVDVPGKSLSLVIIDRIPFP 587 Query: 617 PIDSPVVITEGEWLKSLNRYPF 638 D P+ E F Sbjct: 588 RPDDPLQQARQEAADQRGGSGF 609 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 141/713 (19%), Positives = 274/713 (38%), Gaps = 47/713 (6%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEG---RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 P R Q +M+ + A + + L IEAPTG+GK+L Y +P +A ++ + Sbjct: 257 PHLESRIEQNKMMNMIYNNYASDGHHPAKPLVIEAPTGIGKSLGYSLPFSYLASAQK-PV 315 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 V+STA LQ Q+ ++ LPLL + +P + G Y+ L + Sbjct: 316 VISTATTYLQFQLQNQTLPLLNQSLPFKINSVILKGASHYIDLNKFRHLLFVADSSV--- 372 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 Q GDLD ++ +W + L+ N Sbjct: 373 ----QTAFIKAQILVWLTMTTTGDLDELH-------LNVEQTPFVWT-IQHSGVKWLDAN 420 Query: 199 CYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVAR 258 +Y E ++ Q A+ ++ NH+ ++ + + P L++DE + A Sbjct: 421 SPFYDEDFLRYNLKKAQNADFIIVNHSYLLKNWQFFSGFPVKPY--LLIDETQQFAETAI 478 Query: 259 DALEMSAE---ITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 + + + R++ D+ + + F ++ + + L+ ++ L+ Sbjct: 479 RNNQKQINPLTVMSAVNRVRGDIQEGHYKSARDAFSGNSVLNNS-ADDLDESLNQIKSLL 537 Query: 316 ASLNNILNLYMPAGQEAE-------HRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLN 368 L + L M A Q+ + +L + E + + +L + + +L + Sbjct: 538 KQLTHRLYSQMIANQQLHKNASFFVRLIPISDLKAIINENRETITRLQDKQSEVEDLLIR 597 Query: 369 DLSEKTGSHDI---VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREER 425 SE S D + E + L + +S+ W T Sbjct: 598 LNSEIDHSTDAFTNRDYSSIYDFYEDFNEFAEKLTFLLSTIDMDESAINQNVVWVTVNHV 657 Query: 426 EGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 + + ++ D L ++ S T AT+ S + + G+ KA Sbjct: 658 KDINSFTINQGILKTEDYLNHRIYASFEPPTFTGATIFSSRRSQFIFNLLGIDRKAAS-V 716 Query: 486 VALDSPFNHCEQGKIVIPRMRV-EPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 L S F+ Q +I + + E I N + ++ ++A +++ LVLF S Sbjct: 717 RRLQSDFDPKNQARIYLIDKQSREHFITNSDDYLQQVAQSI-EKIYQASPRQTLVLFNSL 775 Query: 545 RAMQRFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 +A+++ +++ ++L QG K+ + E ++L+G +F EG+D Sbjct: 776 KAIKKTHQFLSKDGFTATHLVLAQGVNGTAA---RLSKQFIHNEPAILLGANTFWEGVDF 832 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 LL + I ++ F + P +S + PF +LP A+ L Q +GRL+R+ Sbjct: 833 PAHLLENLIIAQLPFDTPEDPYNHALYSVERSKGKNPFYSLALPKATLRLRQGMGRLLRT 892 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKSPR 712 +G + + D RL TK YG+ +L L P+ ++ + I + +S Sbjct: 893 KADYGTIFVLDPRLTTKRYGQTILTNLKNEIPVMTGQLDDCINDMVKFFESRN 945 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 366 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 163/731 (22%), Positives = 264/731 (36%), Gaps = 53/731 (7%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 + + AL++ F+ RA Q + VA+ L+ +G LA+EA TG GK+L+Y Sbjct: 272 PDEVSALLGVGGALEQAGEGFMSRAAQLDVAQAVARALS--DGGQLAMEAGTGTGKSLAY 329 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRN 123 L P A + + V+ LQDQ+ KDLP L + + G+ Y+C R Sbjct: 330 LAPAALFAARNGRKVGVAPHTKTLQDQLLEKDLPRLHRATKGAFGYALLKGQTNYLCRRR 389 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY-KWDGLRDHTDIAIDDD 182 EP P +GDLD W R + Sbjct: 390 ALEATRVEPG------MGHSARAPRAYLRAYLRRSGEGDLDRLSHWFRER----FPVLMA 439 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKN 242 L + ++ ++ L C ++ C + A + +EA+V++ N +L A PK Sbjct: 440 LVPAVRSEASTTLGEKCPHFHRCFYHSAVAQAREADVLIINQSLAFAWPARY-----PKL 494 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRP-----KTIPP 297 LVLDE H + DVA AL + A ++ + R + Sbjct: 495 DHLVLDEAHEVEDVATTALTLELSDLAFLRLIERLHGRDGRRGLFAELRKALSASRRTET 554 Query: 298 LAIPERLNAHCEELYELIASLNNILNLYMP-----AGQEAEHRFAMGELPD----EVLEI 348 ++ + L + L + G++ + EL L Sbjct: 555 RSLMGEVEDGLRRLLDDARDLGARVTELCEPTATAVGEDPDEGAYSPELRITATVRTLPA 614 Query: 349 CQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASL 408 + + + E +RG + LS + + R G +L LA Sbjct: 615 WEPVREGLEGVRGALQALHVLLSVRVLAALPELAARQPALERELSGATTELGELAVLAGE 674 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 AP +A E + + + VS + + S +++ SATL + + F Sbjct: 675 LSGEAAPGRCYAATAEPK-RQRWSLSAQPVDVSAYVSKDFAESKRTLVLASATLGTGDGF 733 Query: 469 SRLQEMSGLK---EKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 + GL + R V +PF EQ +V+ E+ E A+ Sbjct: 734 PFVLRRLGLDGRGGRPAPRLVRAATPFKLHEQALVVLVTDAP----RAHEEAFVEWASLR 789 Query: 526 RKQVESKKHLGMLVLFASGRAMQR----FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVA 581 + +L LFAS R M+R + L + +L Q L R Sbjct: 790 ISGLAQTMGGRVLGLFASTRRMERVGTSVRGRLDPLGIEVLRQSRGHSRSLA----ARQE 845 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY--PFE 639 +VL+G +SF +G+D+ G + V I K+ P P+V E L F Sbjct: 846 KDTGTVLLGTKSFWQGVDIPGRGVGCVFIDKLPLEPAMRPLVAAREEPLSRSGGEYMGFL 905 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 LP A L Q VGRLIR+ G V+I D +Y L++AL + +E + Sbjct: 906 HYRLPRALLQLRQGVGRLIRATTDRGVVIISDP--GHPSYRGHLMNALEGYRVEALPWAQ 963 Query: 700 GIVKKKEKTKS 710 ++ K Sbjct: 964 ARLRIHAMLKE 974 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 363 bits (932), Expect = 1e-98, Method: Composition-based stats. Identities = 137/708 (19%), Positives = 268/708 (37%), Gaps = 47/708 (6%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEG---RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 + R Q +M+ + A + +H+ +EAPTG+GK+L YL+P +A + + +V Sbjct: 254 NLEWRPEQAKMMNYIYNNYAEADRHPVKHMIVEAPTGIGKSLGYLLP-MAYLGQTGRPVV 312 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 VSTA LQ+Q+ + +PLL +I+P + G Y+ + + T + Sbjct: 313 VSTATTLLQEQLLDQTIPLLNQIVPFTVNAVLVKGSRHYLDLQRFATTLNVAETSK---- 368 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 + GDLD R ++ + + A + + Sbjct: 369 ---QTQLLKLRLLVWLTMTTTGDLDELHLATYRA--------PYFQEIVHEGAVTV--DN 415 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA-- 257 +Y + + +A+V++ NHA + + + LV+DE HL + Sbjct: 416 PFYDDDFIRRRDHRMAQAQVIIVNHAYLSEHALALGEQL--QQPYLVIDEAQHLTESTLK 473 Query: 258 -RDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 R A++ + +Q D+ ++ + + F T L + RL + + L + Sbjct: 474 QRRTQVKFAQLLNELHHIQRDINREIGPSLLRLFAADTQATLTLH-RLLSASQTLETQLT 532 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK---------LTEMLRGLAELFL 367 +L + L L A + + + E + + + + T+ L Sbjct: 533 TLVDHLFLRFLANKRLNNHNQVIEELVSAQALTEEIDRSRTIDRATMATDDLLAGLNALR 592 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 ++ + R + +L + W T Sbjct: 593 QRYDQQQAQFTSAERYLFEQVNTRVHLFDDQMGQLLEILRQVVDQAPASLFWLTMNHVGD 652 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 + L + L + L+ +++T ATL S + + L+ + Sbjct: 653 RTSLQLASGLLATEGFLSQHLYAGFQPVLLTGATLFSSGRSQYVLDQFDLQREQTV-THR 711 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 + S F++ +Q ++++ S ++ ++A Q+ + L+LF S + Sbjct: 712 MRSSFDYGKQAQLLMADSGPNLSRVAPADYVTYLSAAI-SQIAGAVNKQTLILFNSLSVI 770 Query: 548 QRFLDYV----TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 ++ + R + QG E KR A ++L+G SF EG+DL + Sbjct: 771 EQVYQQLVTQPEFARRDIFAQGVSGSR---ERITKRFATSHGAILLGAASFWEGIDLPSE 827 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 L + + ++ F D V L++ + PF +LP+A+ L Q +GRLIR+ Sbjct: 828 QLELLIVTRLPFDSPDRVFVKANYARLEAAGKNPFYNAALPAATLKLRQGIGRLIRTPHD 887 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPV-FPIEQPEVPEGIVKKKEKTKS 710 +G VVI D+RL+ + YG+ +L ALP P ++ + Sbjct: 888 YGAVVILDQRLVERQYGQSILRALPAELPKTTGDIGTLTQGLINFFEK 935 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 363 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 144/712 (20%), Positives = 255/712 (35%), Gaps = 60/712 (8%) Query: 27 PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANV 86 R Q +M+ D+ + G+E + L ++APTG+GKTL YL+PG A +E + VVST+ Sbjct: 288 WRKEQAKMMNDIYEHFNGDE-KMLLVQAPTGMGKTLGYLVPGAYQA-QEGASTVVSTSTT 345 Query: 87 ALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDEL 145 AL DQI + +PLLKKI+P D + G G Y+ + Q L + Sbjct: 346 ALLDQIVKESVPLLKKIVPFDFTYEVMKGSGHYIDLEKFSHTLKIPMNNQTRLLQM---- 401 Query: 146 TPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYREC 205 + GD+D + R L++ + L+ +Y Sbjct: 402 ----RILSWLWQTTTGDMDELRLTTYRA--------QLFKMIKHAGVGSLSDKSAFYGLD 449 Query: 206 PFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSA 265 + ++ A+ V NH+ + A K L+LDE ++P VA + Sbjct: 450 FVRLRDVRVKFADFVFTNHSYL----VRHAEEIGKKKANLILDEAQNIPSVAMEQGGSVF 505 Query: 266 EITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLY 325 + L+ + + + + I +++ + Sbjct: 506 DFDLVKIYSDT-----LLVSMESRISFSFEGLIRQHFLTKNEYRTILRNIQIIDHSVPFI 560 Query: 326 MPAGQEAEHRFAMG--------------------ELPDEVLEICQRLAKLTEMLRGLAEL 365 E R G E L+ + +L + + + Sbjct: 561 REKFWERYVRTKGGSKKEFVETLLSPNKVLGLLKENFAIFLKTTKAYTELLGQMTEMKQR 620 Query: 366 FLNDLSEKTGSHDIVRL-HRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 F L T H+ V L + + + E L S + W Sbjct: 621 FFRALDAGTLDHEAVNLLTDWFIDCEKLVESMEKWHLLE--FSELEKMDETTLVWMKHSP 678 Query: 425 REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 + HL + LE ++ HI++ A L + + ++ L + Sbjct: 679 NNPKTHLRLCFSRLEAGKYLEERVYGYFKHIVMCGALLFTKKTEDYTKDQLRLDDD--VL 736 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 S F++ Q + V + S + + K L LVLF S Sbjct: 737 TKRYQSEFDYAHQARAVFATDSPDLSSMLSKAEYHAYLTDALSDIIEKTSLQTLVLFNSL 796 Query: 545 RAMQRFLDYVT----DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 ++ + ++ + + +L QG ++ ++ V +S+L+G SF EG+DL Sbjct: 797 EDIEAVYNGLSIRGLNKKREILAQGVNGTPEKLK--KRFVLTSSKSILLGAGSFWEGIDL 854 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 D L + I ++ F DS + +++ PF SLP A+ Q GRLIR+ Sbjct: 855 PEDKLELLVITRLPFQSPDSLINKVRYRNVQAKGHNPFSAVSLPEAALKFRQGFGRLIRT 914 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEKTKSP 711 G + + D R++ K Y D LP I++ E+ + ++ K Sbjct: 915 KDDHGILAVLDSRIVNKRYAHEFTDTLPKDLRIDRVEMKDIPEIIRDTEKDF 966 >UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUZ2_ACIC1 Length = 710 Score = 361 bits (926), Expect = 5e-98, Method: Composition-based stats. Identities = 148/709 (20%), Positives = 254/709 (35%), Gaps = 127/709 (17%) Query: 42 LAGEEGRHLAIEAPTGVGKTLSYLIPGIAI------AREEQKTLVVSTANVALQDQIYSK 95 L+G + RHL ++A TG GK+L+YL+P + A +E++ ++V+TA +ALQ Q+ + Sbjct: 41 LSGGDKRHLLVQAGTGTGKSLAYLVPAMWHVTARDDADDERRPVIVATATLALQRQLVER 100 Query: 96 DLPLLKKIIPDL-----KFTAAFGRGRYVCPRNL-------TALASTEPTQQDLLAFLDD 143 DLP L +++ L F GR Y+C L + D L Sbjct: 101 DLPRLVEVLSPLLPRRPTFAILKGRRNYLCRLRLGGSDQPDLLADDLDVLPMDALPMDVA 160 Query: 144 ELTPNNQEEQ---------------------------------------KRCAKLKGDLD 164 E+ + A++ + Sbjct: 161 RAGAAPAREKTGGAGVIAAGLPGTANVRQGTGESPDAPAAGFLAWSALGREVARITSWAN 220 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN-RNCYYYRECPFFVARREIQEAEVVVAN 223 G RD + + W + + C+ C + C +AR +A++VV N Sbjct: 221 ETS-TGDRDELVPGVSERAWGQFAVTARECVGASRCPHGSRCFSELARIRAGQADIVVTN 279 Query: 224 HALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLV 283 HA++ + +A + P++ ++++DE H L D Sbjct: 280 HAMLAVDVLGDAPVL-PEHDVVIVDEAHELVDRVT----------------AAATAELGA 322 Query: 284 ATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 A + RL E + ++ Sbjct: 323 ADVVRVANRLRTFASVAAGRLERAVGEFDAALRDVS------------------------ 358 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW 403 V + +L +L G+ + +S G + R A +L+ Sbjct: 359 -VGRLIDLPERLVTVLSGIRDAAREGVSALLGEITVD---------GRRAQARAAAEELF 408 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 AS + + +W R++R G + V+ L ++ S ++TSATL Sbjct: 409 DTASRFLAGDSGDVRWLDRDDRGGA---VLRAAPLDVAPLLRNAIFAS-RIAVLTSATLT 464 Query: 464 SLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN-EEQHIAEMA 522 SF + E GL R + + SPF++ QG + + P D + E+ Sbjct: 465 VGGSFHPMIERLGLHHD--VRTLDVGSPFSYQRQGILYVASHLPPPGRDGISADALEELV 522 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQGDQPRYRLVELHRKRVA 581 A + + L LF+S RA Q + + +L QGD L+ +R A Sbjct: 523 A-----LMTAAGGRTLGLFSSMRAAQEAAAFARERVDFPVLCQGDDATAELI----RRFA 573 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 ++ L G S +G+D+ G V + +I FP D P++ + + F Sbjct: 574 ADAQTCLFGTLSLWQGVDVPGAACQLVVVDRIPFPRPDDPLMAARQQAVTEAGGNGFLQV 633 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 + A+ L Q GRL+RS G V + D RL T Y + L +LP F Sbjct: 634 AAGHAALLLAQGCGRLLRSPHDRGVVAVLDSRLATARYARFLRSSLPPF 682 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 357 bits (916), Expect = 7e-97, Method: Composition-based stats. Identities = 145/711 (20%), Positives = 253/711 (35%), Gaps = 45/711 (6%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P + R Q +M+ + T A + L IEA TG+GKTL YL+P +A EQ LVV+ Sbjct: 248 PRYRFRKAQAKMMDAIF-THAQKTEIPLFIEAGTGLGKTLGYLLPYAYLATPEQ-KLVVA 305 Query: 83 TANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 T+ + LQ Q+ ++ +P L ++ L Y+ A E + Sbjct: 306 TSTLVLQTQLITQAIPELDALLGRTLPTVELKSPQHYLDLNKFAASLHQEGPTRQTQLLQ 365 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 L GDLD R L+ + + Sbjct: 366 MKLL-------VWLTQTTTGDLDELHLTTYRA--------PLFAEIRHSGDVGTPFINPF 410 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPD--VARD 259 Y + + ++ +A VVV NHA + A K LV+DE H D A Sbjct: 411 YTFDFYRRLQAKLADAVVVVTNHAFL----SRHADTLPFKRPFLVVDEAQHFADNTAAAF 466 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 A ++ + L + L + ++LN + +L Sbjct: 467 ARRVALDHLNHQLHRVWQLSEPDERHSLTAIYQSEPAMLTVLQQLNQQAATAETAVNTLQ 526 Query: 320 NILNLYMPAGQE-AEHRFAMGELPDEVLEICQRLA--------KLTEMLRGLAELFLNDL 370 ++ + G+ A F L + ++ K+ L + D Sbjct: 527 RQIHRHFFFGKTTAASGFVNLSLDSAAAKWLEQTQTATIKSLIKVLGRLTVTTDKLTADF 586 Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 + + + + + + + L L S A + R+ Sbjct: 587 NRRPHFFLKSDGQQFQALAALRIALADHRQLLQELLSRLPDLIAGQAVIMSVNLRQITDV 646 Query: 431 LWFHCVG--IRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL 488 +V +++L+ + ATL + SF L G E F+ L Sbjct: 647 ASLELSWDVFQVGSAVQQLIH-HFEAPVFVGATLTAERSFDFLTAQLGYHELPESSFLKL 705 Query: 489 DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQ 548 SPF++ +Q K+++ + +++ + +A + ++ +VLF S ++ Sbjct: 706 RSPFHYRDQAKVLVATDAPHAADVSDDAYADYLAMAIEQLADN--QYQTIVLFNSLSVIE 763 Query: 549 RFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDL 604 + + LL QG + KR A GE+S+L+G SF EG+D L Sbjct: 764 AVYQRLIHRPIAGHKELLAQGVTGSAEKIA---KRFAVGEQSLLLGAASFFEGIDYPDRL 820 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 L V + ++ F ++P+ ++ PF +LP A L Q GRLIR+ Sbjct: 821 LEIVILTRLPFDAPEAPITKARYRQIQLSGGDPFTEDALPRAILRLRQSFGRLIRTETDR 880 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRR 715 G +I D R +T YGK++ +LP + + + +S R Sbjct: 881 GAFIILDPRFITTAYGKKMQKSLPNIKPMTLPLTDIPGYIRMWLRSKSANR 931 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 162/730 (22%), Positives = 266/730 (36%), Gaps = 51/730 (6%) Query: 2 ALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 + A + + LQ + PR Q++M VA + G LA+EAPTG GK+ Sbjct: 309 SPAADAFSAARDAFAVLQTR-HQLRPREAQQEMARAVADVF--DHGGRLAVEAPTGTGKS 365 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP 121 L+YL+P I A + +V++TA LQ Q+ + L + F G YVC Sbjct: 366 LAYLLPAIGRASRPGQPVVIATATKTLQGQLRVEATRLHDDGLLGAPFRQIQGVANYVCT 425 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 R L S + LA + + G D D +R Sbjct: 426 RELEDALSDRESSPLALAVALRAIAASP----------TGTWDDVTDDVIRRRD--TRYA 473 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVV-ANHALVMAAMESEAV---L 237 RL T+ C C + + CP + +A VV NHAL+ + ++++ + Sbjct: 474 RTRARLRTNAGGCDRTKCVWAQVCPMTQQLNGLDKAPGVVSVNHALIASWVKTDHAPGDV 533 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPP 297 LV DE H L D A + + + + Sbjct: 534 LTESRADLVFDEAHGLEDSLTAAWTERVDALELDILVNSLSPRSKLMRGIRSRAGTDTSF 593 Query: 298 LAIPERLNAHCEELY----ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 + + ++ EL ++ L+ Y R + E + Q Sbjct: 594 TEASQAITTSSTQVRSSGAELAQAIETYLHEYAGKSDSVVLRTGVVNSRPEFRVLRQAAT 653 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 + L LA+ G + R + + L R G Sbjct: 654 AVRYWLIQLAKAVTALSQSLAGVNGTGSARRRLRGYSERLDAAIELLDTMREL----PDG 709 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 E + + + + V + E+L+ ++ SATL + F + Sbjct: 710 HLWVYRL-AAEEDDPAAWTYERIPVHVFPEFEQLVVDRTHSTVLCSATLTVQHRFDFIAS 768 Query: 474 MSGL-----KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQ 528 G+ + AG R + L SPF++ +Q +++ P NE + EMAA + Sbjct: 769 RLGIGIAADPDGAGFRGLRLPSPFDYSKQSLVILTNHLPVPIPVNEREFCEEMAAD-QTG 827 Query: 529 VESKKHLGMLVLFASGRAMQRFLD-------YVTDLRLMLLVQGDQPRYRLVELHRKRVA 581 S L LFA+ M+ + + LLVQGDQ R ++ ++R Sbjct: 828 FLSLSGGKTLTLFAARTRMEAVAAGVRIRAAELAQRGVELLVQGDQGRSQI----QRRFR 883 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ 641 + +VL GL+S+ EG D G+ LS + I K +P D P++ + PF Sbjct: 884 DEPGTVLYGLRSYWEGFDAPGETLSYLFIEKPPYPHPDDPLISARQRAIADRGDDPFLDY 943 Query: 642 SLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY-GKRLLDALPVFPIEQPEVPEG 700 LP + Q GRLIRS G ++ D+RL + + +LD+LP PE+ E Sbjct: 944 VLPMTAMQFAQGFGRLIRSETDRGAALVCDRRLHSPTQAQRVILDSLP-----NPEIHEA 998 Query: 701 IVKKKEKTKS 710 + T++ Sbjct: 999 ADRDDAWTRA 1008 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 354 bits (907), Expect = 8e-96, Method: Composition-based stats. Identities = 141/688 (20%), Positives = 242/688 (35%), Gaps = 46/688 (6%) Query: 23 PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 P R Q M+ + E L IEA TG+GKT+ YL+P + LVV+ Sbjct: 256 PHLKWRKAQATMMDLIHDNFESETPEPLLIEAATGLGKTIGYLLP-YSYRMSRDHKLVVA 314 Query: 83 TANVALQDQIYSKDLPLLKKIIPD-LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 T+ LQ+QI ++ PLL++++ + Y+ + + Sbjct: 315 TSTTLLQEQILTQAKPLLERLVGRQINAAVVKSASHYIDLHRFELSLRLPHKNRMIRLLQ 374 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 + GDLD + + + + LN + Sbjct: 375 M-------KILVWLTQTTTGDLDELNLTSYK--------TPFFVSIQHRGLASLNPQAPF 419 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVA--RD 259 Y E Q+AE++V NHA + + + + + LVLDE ++ Sbjct: 420 YHEDFLRRLTHRQQQAELLVTNHAYLASHADEQQIWGPKPY--LVLDEAQNMVFNVQTIS 477 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 S W + L T + + P P + L+ +L +A L Sbjct: 478 QETWSLSSWQFWAQKGLQYTTGAQTNNLVRLFPAETPQNRSLKLLHKTLGKLTRTLAHLE 537 Query: 320 NILNLYMP-----AGQEAEHRFAMGELPDEVLEICQRLA--------KLTEMLRGLAELF 366 L GQ R+ + + + QR + + L Sbjct: 538 TYLTEQFEPDEPTDGQTFSERYLNPDEVIQFVNASQREFGQLNRELLTIQDHFLALRYAL 597 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPV-TKWATREER 425 + L+ T S D+ ++N L + + +L + TR + Sbjct: 598 EDQLARYTES-DLAIWQSFENELNLLLADVDHYQRFEQLFIATKPQERHALAIQITRPSQ 656 Query: 426 EGQL-HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDR 484 QL H + Q++++L + +T ATL F L+ G E+ + Sbjct: 657 PSQLPQFKLHWQLLSAGPQMQQVL-SHFEPVTLTGATLAVNGHFDYLKREFGFTEEQALQ 715 Query: 485 FVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASG 544 L SPF +Q + I + ++AA + + H L+LF + Sbjct: 716 TKKLRSPFRFKQQARFYIAEDGPVQKELTPSDYHQQVAAQVMTLIANNPHQ-TLILFNAN 774 Query: 545 RAMQRFLDYVTDLRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 + +++ + L +L QG + KR G SVL+ SF G+D Sbjct: 775 QTLEQVYYALGRAGLSLDREVLAQGITGSAEKI---TKRFMLGHDSVLLATSSFVSGVDF 831 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 L V + ++ F ++ L + PF+ ++LP A+ L Q GRLIR+ Sbjct: 832 PEAALEMVILVQLPFDAPNALQTRVRYAQLAAQGINPFKAEALPKATIRLRQSFGRLIRT 891 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALP 688 G + D RLLT YG+++ ALP Sbjct: 892 PNDHGLFICLDPRLLTTQYGQQMRRALP 919 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 350 bits (898), Expect = 9e-95, Method: Composition-based stats. Identities = 140/713 (19%), Positives = 258/713 (36%), Gaps = 53/713 (7%) Query: 27 PRAPQRQMIADVAK-----TLAGEEGRHLAI-EAPTGVGKTLSYLIPGIAIAREEQKTLV 80 R Q +++ + +L+ + G I EAPTG+GKTL +L+P + + QK ++ Sbjct: 283 YREQQAKLMNAINNHYSGSSLSEKPGESAFIAEAPTGMGKTLGFLLPYAYLTNQNQKKVI 342 Query: 81 VSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 V+ + LQ Q+ +L I+P +++ + GR +Y+ ++ + L Sbjct: 343 VTEPTITLQTQVTETVNTVLHDILPFEVRAVSLKGRHQYLNLQSFKRSLQIDEGTTSLQF 402 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNC 199 Q ++GD D +LS + + Sbjct: 403 I-------KAQILVWLTETMRGDFDELHLM--------NAQQKFIAKLSQNANNPAGS-- 445 Query: 200 YYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARD 259 +Y F Q A+ ++ NH+ + + + LV+DE +LPD + Sbjct: 446 PFYGYEFFERQYVLAQNAQFLIVNHSYLA--EYANELGTSENKPYLVIDEAQNLPDAVLN 503 Query: 260 ALEMSAEITAPWYRLQ------LDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 I R+Q L V + + L E+ + Sbjct: 504 QSRHQLPIQTWLARVQTAINLILQDAKPAVGDILRNIFGGNQLKNKLLRALEMLSVEIPQ 563 Query: 314 LIASLNNILNLYMPA---GQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L SL L A E A + ++ + + L + L Sbjct: 564 LQVSLYRRFLLNQKAPATQGTYEIALANNDFAQFWIDQSNHVQSIHTGASDLEDALQELL 623 Query: 371 SEKTGSHDIVRLHRL--ILQMNRALGMFEAQSK-LWRLASLAQSSGAPVTKWATREEREG 427 ++ + + L + R L K L W T + Sbjct: 624 TQFSDTKGAFSLGERQQLADFRRLLDNISQYEKQLTTFQQDLVDFPEASIFWLTETQSHD 683 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 +L + + + ++ V ATL + L + L ++ Sbjct: 684 SSNLQLSGGLLHTLNYFKEKVYPHFMAPTVIGATLFTSTKSGYLYDRLNLDKET-ATVRH 742 Query: 488 LDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAM 547 F+ Q +++ + P+ + ++A+ V + + LVLF S + Sbjct: 743 YPDIFDFKNQADLIMVKNAPLPTEKDFSNYLAKQ----LVDVTTSVNQNTLVLFNSLDTI 798 Query: 548 QRFLDYVTDLR------LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLK 601 Q+ +++ + L LL QG + +KR+ + + V++G SF EG+DL Sbjct: 799 QQVYNHIQSNKKFQQSSLTLLAQGVTGTRGKI---KKRMQSEDGLVVLGAASFWEGIDLP 855 Query: 602 GDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSH 661 GD L + I ++ F ++ + E + S + PF +LP A L Q +GRLIR+ Sbjct: 856 GDQLRLLIIARLPFDRPNTVLQKAEEAVINSEGKQPFYQSTLPKAVLRLRQGIGRLIRTP 915 Query: 662 GCWGEVVIYDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEKTKSPRR 713 +G V+IYD R+LTK+YGK L +P P ++ E ++ K + Sbjct: 916 TDYGAVIIYDARILTKSYGKTLRKMMPSNLPQKELNDYEVSLELKNFFDEHHK 968 >UniRef50_Q29FS3 Regulator of telomere elongation helicase 1 homolog n=8 Tax=Diptera RepID=RTEL1_DROPS Length = 1009 Score = 349 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 123/772 (15%), Positives = 254/772 (32%), Gaps = 91/772 (11%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR--- 73 + P F P QR + V L +G + +E+PTG GKTLS L +A R Sbjct: 8 GIPVHFP-FEPYNVQRDYMEKVIICL--RDGTNGVLESPTGTGKTLSLLCASLAWIRTRQ 64 Query: 74 ---EEQKTLVVSTANVALQDQIYSKDLPLLKKIIPD-----LKFTAAFGRGRYVCPRNLT 125 ++Q + +T+ DL L + + R + + Sbjct: 65 SEHQQQMIKLKATSKEGGPGSGPGGDLSELAMTVGQANNWGVPKVIYASRTHSQLNQAMR 124 Query: 126 ALASTEPTQ--------QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 L T +D L + + + KL+ T + + Sbjct: 125 ELKRTAYANMRSVVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHSKTCTFQLRVES--- 181 Query: 178 AIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL 237 D +R S L R + CP++ ++ + +A++ + ++ +A Sbjct: 182 KKDHPDFRGPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANK 241 Query: 238 PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQ-LDLFTKLVATCMEQFRPKTIP 296 + N +++LDE H++ + ++ + + ++ + K+ + Q P Sbjct: 242 IELGNTIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEAGGDEP 301 Query: 297 PLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI--CQRLAK 354 + L E L EL +++ ++ G L C + Sbjct: 302 KDFTLDDLTLLKEMLLELEKAIDAVVVDNPTDGTTYPASLMYELLGKANFTYGNCATIVA 361 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 L + L + ++ + G + L + + +++ + S Sbjct: 362 LLDKLVQYLMVASQHMTIRKGGTFTMLSDLLTIVFANKENIMSKVHLSFKVHVQVEESNK 421 Query: 415 PVTK----------W-----ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 K W T + + +E+LL + +I+TS Sbjct: 422 QQGKSGATQGKQQGWLGKGNITTTGTSSKAAKIVNFWCFNPGFGMEQLLNTQVRSVILTS 481 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI---------PRMRVEPS 510 TL L + E A L++P + +Q ++ + ++ Sbjct: 482 GTLAPLKPL--------IAELAIPVAQHLENP-HIVDQSQVYVKIIGTGPDRQQLISNFK 532 Query: 511 IDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT----------DLRLM 560 + ++I+ + V G+LV F S + + +D + Sbjct: 533 NRDNPKYISSLGQTILN-VARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIF 591 Query: 561 LLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPI 618 + +G +E + + + + +V + + +EGLD V I + FPP+ Sbjct: 592 VEPRGKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPL 651 Query: 619 DSPVVITEGEWL-----KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 P VI + +L K + A+ + Q +GR+IR +G +++ D R Sbjct: 652 KDPKVILKRRYLETNRTKENQLLSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSR 711 Query: 674 LLTKNYGKRLLDAL-----------PVFPIEQPEVPEGIVKKKEKTKSPRRR 714 + ++L + P PI + E+ + +E K P R Sbjct: 712 FQDASQVQQLSKWIRGHLGARPQSSPFGPIVR-ELRQFFKHAEETMKQPDVR 762 >UniRef50_Q9W484 Regulator of telomere elongation helicase 1 homolog n=6 Tax=Sophophora RepID=RTEL1_DROME Length = 985 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 124/780 (15%), Positives = 253/780 (32%), Gaps = 108/780 (13%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 + P F P QR + V L +G + +E+PTG GKTLS L +A Sbjct: 8 GIPVHFP-FEPYPVQRAYMEKVIHCL--RDGTNGVLESPTGTGKTLSLLCSSLAW----- 59 Query: 77 KTLVVSTANVALQDQIYS---------------KDLPLLKKIIPD-----LKFTAAFGRG 116 + T Q Q+ DL L K + + R Sbjct: 60 ----IRTRQSEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRT 115 Query: 117 RYVCPRNLTALASTEPTQ--------QDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW 168 + + L T +D L + + + KL+ T + Sbjct: 116 HSQLTQAMRELKRTAYANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKTCSF 175 Query: 169 DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM 228 + + D R + L + + CP+F +R + +A++ + ++ Sbjct: 176 ---QMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLL 232 Query: 229 AAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQ-LDLFTKLVATCM 287 +A + N +++LDE H++ + ++ + + + ++ + ++ A+ Sbjct: 233 DPKARKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGE 292 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE 347 Q P + L E L EL +++ I+ G L Sbjct: 293 SQDMAGDEPKDFTLDDLTLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYELLGKANFT 352 Query: 348 ICQ--RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRL 405 + L + L + +S + G + L + + +++ Sbjct: 353 YGNVATIVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDVMSKVYASFKV 412 Query: 406 ASLAQSSGAPVTK---------WATREEREGQLHLW-----FHCVGIRVSDQLERLLWRS 451 L + S K W + L + +E+LL Sbjct: 413 HVLVEESKQGHGKQQGAKQQGGWLGKGTIAAATGLSKVAKIINFWCFNPGFGMEQLLNTQ 472 Query: 452 IPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI--------- 502 + +I+TS TL L + E A L++P + +Q ++ + Sbjct: 473 VRSVILTSGTLAPLKPL--------IAELAIPVAQHLENP-HIVDQSQVYVKIIGTGPDR 523 Query: 503 PRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT------- 555 ++ + + ++I+ + V G+LV F S + + +D Sbjct: 524 QQLISNYANRDNPKYISSLGQTILN-VARIVPDGLLVFFPSYPMLNKCVDAWQASGLWAD 582 Query: 556 ---DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHI 610 + L + +E + + + + +V + + +EGLD V I Sbjct: 583 ISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFADRNGRAVII 642 Query: 611 HKIAFPPIDSPVVITEGEWLK-----SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWG 665 + FPP+ P VI + +L+ + A+ + Q +GR+IR +G Sbjct: 643 TGLPFPPLKDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQAIGRVIRHRNDYG 702 Query: 666 EVVIYDKRLLTKNYGKRLLDAL-----------PVFPIEQPEVPEGIVKKKEKTKSPRRR 714 +++ D R + ++L + P PI + E+ + + K P R Sbjct: 703 AILLCDSRFKDASQVQQLSKWIRGHLGDRPQCSPFGPIVR-ELRQFFKNAEANMKLPDER 761 >UniRef50_UPI00017937E6 PREDICTED: similar to regulator of telomere elongation helicase 1 rtel1, partial n=2 Tax=Acyrthosiphon pisum RepID=UPI00017937E6 Length = 967 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 108/771 (14%), Positives = 239/771 (30%), Gaps = 118/771 (15%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + + P + P Q++ I V + L G + +E+PTG GKTLS L +A + Sbjct: 7 RGVLVDFP-YEPYEVQKRYIEKVLECLQN--GHNGVLESPTGTGKTLSLLCSSLAWLLAK 63 Query: 76 Q---------------------------------------KTLVVSTANVALQDQIYSKD 96 + ++ + +Q+ + Sbjct: 64 KAAIQANRMCPTESNLTISINTAAGVDKNPNSAWNGVIRPPRIIYGSRTHTQLNQVMKE- 122 Query: 97 LPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRC 156 L++ G +C + A ++ + R Sbjct: 123 ---LRRTNYKHMKVGIIGSRDQLCIHP----------EVTKEATSSVKIALCRAKVSTRT 169 Query: 157 AKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQE 216 + +++ D ++ L + CP++ +R ++ Sbjct: 170 CQFYNNVELKSKDAFVENG-------------IADIEDLVNKGKKFNCCPYYGSRELQKD 216 Query: 217 AEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL 276 +++ + ++ +A + +++LDEGH++ + + S +I++ L + Sbjct: 217 VDILFTPYNYIIDPRTRKAQDIQFSDDVIILDEGHNVEKMCEE--SCSVDISSTDIALCI 274 Query: 277 DLFTKLVATCMEQFR------PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQ 330 D T ++ ++ P + P + + L+ I + + + L Sbjct: 275 DAVTDIMKQLYDEKNTEFSTEPIQLKPREFSDDDICVLKALFLEIEKVIDGIELTNSTND 334 Query: 331 EAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMN 390 + + +L ++K L + + S L++ + Sbjct: 335 KKMEGSYIFKLLQGADITPSNMSKFISFLSSVTLYMSSSNSNAPHQAKEACLYKFQQFLE 394 Query: 391 RALGMFEAQSK-------LWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQ 443 L L QS P +E + L F C Sbjct: 395 CVLQSLGTNGDPKNTDKYFRTYIQLEQSKYKPKNDSIKLKEFKKGKTLNFWC--FSPGFG 452 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIP 503 + LL R++ II+TS TL L + G+ K + + Q + + Sbjct: 453 MRDLLDRNVRCIILTSGTLSPL---AATISEIGIPVKVQLQNAHVI----KNSQVCVSVI 505 Query: 504 RMRVE-------PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV-- 554 + + N + + G LV F S + + +++ Sbjct: 506 KSGPSNKPLICNYTSRNNSDFLTSLGQTLVN-FSRIIPGGTLVFFPSYPFLDQCVNHWQG 564 Query: 555 --------TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDL 604 + + + + ++E + K + + ++L+ + +EGLD Sbjct: 565 CNIWASITKNKSIFVEPKNKDVLNSVIEEYYKAIQENKGAILLAVYRGKVSEGLDFSDWK 624 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY-----PFEVQSLPSASFNLIQQVGRLIR 659 V I + +PP P V+ + E+L + + + A + Q +GR+IR Sbjct: 625 ARAVIILGLPYPPYQDPRVVMKREYLDEMRKENSQCLSGQEWYKLEAIKAVNQAMGRVIR 684 Query: 660 SHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKS 710 G WG ++ D+R + N +L L + + + K Sbjct: 685 HIGDWGSIIFCDERYASFNIKSQLSAWLQPHIKIYDQFSIAYRENMKFFKE 735 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 341 bits (873), Expect = 8e-92, Method: Composition-based stats. Identities = 117/677 (17%), Positives = 228/677 (33%), Gaps = 38/677 (5%) Query: 25 FIPRAPQRQMIADVAKTLAGEEG--RHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVS 82 R Q ++ + + EG +H+ IEAPTG GKTL YL P IARE+Q+ +VVS Sbjct: 255 LSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVS 314 Query: 83 TANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 LQ+Q+ + L I+ ++F G Y+ + + Sbjct: 315 VPTTILQNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMKSITHQT-------LS 367 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 D + GD D + + + LN + Sbjct: 368 KDSRLVAMKILVWLTKTDTGDFDEIN--------HHINFSNFVDGIRHHGKTVLNPKSKF 419 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 + + A ++++ A+ ++ NH + + ++ + + LLV+DE H P + + Sbjct: 420 FEYDFYRRAMKKLKYADFIITNHRYLA--LHADEIGESDQQPLLVIDEAQHFPTIVSNMN 477 Query: 262 EMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNI 321 + ++ L ++LV T + L + + I Sbjct: 478 QKFLDLNELMMETHR-LVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEI 536 Query: 322 LNLYMPAGQEAEHRFAMGELPDEVLE-----ICQRLAKLTEMLRGLAELFLNDLSEKTGS 376 + P E++ + ++++ LA F+ + Sbjct: 537 QQKLFDKFVAPRKKNLYENQPAEIVIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFF 596 Query: 377 HDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCV 436 D + + +K + W T + Sbjct: 597 KDQELTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWITLGPNHDPGSIRIGKE 656 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 + + + + +++ TL + S + GL + + Sbjct: 657 ILDTGEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETS-IRTFRRGVDFEN 715 Query: 497 QGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD 556 Q + + ++ + A+ A + + + LVLF S ++ + + D Sbjct: 716 QLDFEVLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHD 775 Query: 557 LRL----MLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHK 612 L ++ QG + + + E ++L G SF EG+D GD L + + + Sbjct: 776 SDLNESRRIIAQGIHGSKAKI---IREFNDEENAILFGAASFWEGVDFPGDRLEYLIVTR 832 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + F + +V + + R F LP A Q +GRLIR+ G V+ D Sbjct: 833 LPFRSPEDRMVQ----FARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDTGVAVMLDN 888 Query: 673 RLLTKNYGKRLLDALPV 689 R++ K+YGK + LP Sbjct: 889 RIINKDYGKLFIKQLPS 905 >UniRef50_B3S2Q7 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S2Q7_TRIAD Length = 702 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 109/757 (14%), Positives = 236/757 (31%), Gaps = 122/757 (16%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR-- 73 + ++ P F P Q + +V + L +EG++ +E+PTG GKTL L +A + Sbjct: 7 RGIEVDFP-FNPYPCQLDYMTNVIQCL--QEGKNGILESPTGTGKTLCLLCACLAWRQTY 63 Query: 74 ----------------------EEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTA 111 ++ S+ + Q+ ++ LK I K Sbjct: 64 VAQVQLNQRIQMQQLQQNPNTDRNMPKIIYSSRTHSQLSQVVNE----LKHTIYRPKICI 119 Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 R + +C A + ++ + R +++T K D Sbjct: 120 LGSREQ-MCIHPEVAKLQSN----------TAKIHACRAKVNARTCHFCNNVETKKDDPS 168 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 + I++ L + CP+++AR A++V + ++ Sbjct: 169 FSENILDIEE-------------LVELGGKQKVCPYYMARELRSNADIVFMPYNYLIDFK 215 Query: 232 ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 ++ D KN +++ DE H+L + D S ++++ +D + Sbjct: 216 SRQSNSIDMKNAIIICDEAHNLEKICED--SASFDLSSADIANCIDEVDNFINILQRIKS 273 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 Y+ N+ NLY + + E+ ++ + Sbjct: 274 TTDSEE--------------YDATGMRCNVNNLYCLTMRYVIESSYIYEIFKQLNVTFET 319 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS-KLWRLASLAQ 410 ++L + ++ D L + + L + L +S Sbjct: 320 KHLFVQVLGKCIDATVS---------DSKTLRAKHFGLEKVLDILTVIFLDLSSGSSSNS 370 Query: 411 SSGAPVTKWAT--REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 V + + S ++ L+ + + +I+TS TL + S Sbjct: 371 QRYYKVIIYIETLIDYYSSNCCRILSYWCFSPSYSMKELIDQEVRAVILTSGTLSPIESL 430 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV-------EPSIDNEEQHIAEM 521 ++S + + +Q I + ++++ + Sbjct: 431 VAEFQVSFPVQLQNPHVID-------KKQIWIGTVSKGPCGTALNSSYRNRSSAEYLSSL 483 Query: 522 AAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL----------MLLVQGDQPRYR 571 G+LV F S M +++ + + Q R Sbjct: 484 GNTIVNFA-RIIPDGLLVFFPSYPVMNSCIEHWQSSGIWDRICQHKSLHIEPQHKSEFNR 542 Query: 572 LVELHRKRVANGE--RSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 +++ + V + ++ +G+ +EG+D V I + FPP V+ + Sbjct: 543 VMDEYYSSVRDENCSGAIFLGVCRGKVSEGVDFADINGRAVIITGLPFPPSKEAKVMLKM 602 Query: 628 EWLKSLNRYPF--------EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNY 679 ++L F AS + Q +GR+IR +G +++ D+R K+ Sbjct: 603 QYLDEN--IGFKEHKSICGRDWYRQQASRAVNQAIGRVIRHRNDYGAIILCDERFNQKDS 660 Query: 680 GKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 +L L + K+ + R Sbjct: 661 ISQLPKWLKDYVQAYGSFGLTQKSLKDFFSTAMTLVR 697 >UniRef50_B4L1Z2 Regulator of telomere elongation helicase 1 homolog n=2 Tax=Drosophila RepID=RTEL1_DROMO Length = 1014 Score = 339 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 124/781 (15%), Positives = 258/781 (33%), Gaps = 99/781 (12%) Query: 12 AAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI 71 + + P F P QR + V L +G + +E+PTG GKTLS L +A Sbjct: 3 ESIIAGIPVHFP-FEPYEVQRAFMEKVIMCL--RDGTNGVLESPTGTGKTLSLLCSSLAW 59 Query: 72 AREEQKTLVVSTANV---ALQDQI----YSKDLPLLKKIIPD-----LKFTAAFGRGRYV 119 R Q ++ + Q Q + + L + + R Sbjct: 60 IRTRQSEHQINMQKLQMEQQQRQATGGSATGAISDLALTMGKANNWGVPKVIYASRTHSQ 119 Query: 120 CPRNLTALASTE--------PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGL 171 + + L T +D L D + + KLK T + Sbjct: 120 LTQAMRELKRTAYASMRSVVLGSRDQLCIHPDVMKEQGNSNKVNMCKLKVHAKTCSFQLR 179 Query: 172 RDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM 231 + D +R S L + + CP++ ++ + A++ + ++ Sbjct: 180 VES---KKDHPDFRGPSIMDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPK 236 Query: 232 ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 +A + N +++LDE H++ + + S +I + + ++ T ++ Sbjct: 237 ARKANKIELSNTIVILDEAHNIEKICEE--SASVQIRSSDVAMAIEDVTHIMKIFTSADS 294 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 + P + L E++ L ++ + Q + + E+L Sbjct: 295 QDSGGPEEPKDFTLDDLTLLKEMLLELEKAIDGVVVENQVEGTTYPAAHI-YELLGKANF 353 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMF-----EAQSKLWRLA 406 + L + + L H ++R + ++ L + + +K+ R Sbjct: 354 TYGNCATIVALLDKLVQYL-MVASQHSMLRKGGSFMVLSDLLNVVFANKEDIMAKVHRSF 412 Query: 407 SL------------AQSSGAPVTKWA----TREEREGQLHLWFHCVGIRVSDQLERLLWR 450 + A +S + T W + + +E+LL Sbjct: 413 KVHVQIEDTKQTKPAGNSNSKQTGWLGKGNNATSTVSKTAKIINFWCFNPGFGMEQLLNT 472 Query: 451 SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI------PR 504 + +I+TS TL L + E A L++P + +Q ++ + P Sbjct: 473 QVRSVILTSGTLAPLKPL--------IAELAIPVAQHLENP-HIVDQSQVYVKIIGTGPD 523 Query: 505 ---MRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT------ 555 + + ++I+ + V G+LV F S + + +D Sbjct: 524 REQLISNYKNRDNPKYISSLGQTILN-VSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWA 582 Query: 556 ----DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVH 609 + L +G +E + + + + + + + +EGLD V Sbjct: 583 DLSSRKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGLDFADRNGRAVI 642 Query: 610 IHKIAFPPIDSPVVITEGEWL-----KSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 I + FPP+ P VI + +L K + A+ + Q +GR+IR + Sbjct: 643 ITGLPFPPLKDPKVILKRRYLETNRTKENQLLSGQEWYNLDATRAVNQAIGRVIRHRHDY 702 Query: 665 GEVVIYDKRLLTKNYGKRLLDAL-----------PVFPIEQPEVPEGIVKKKEKTKSPRR 713 G +++ D R + ++L + P PI + E+ + ++ P Sbjct: 703 GAILLCDARFQDASQVQQLSKWIRGHLGARPQSSPFGPIVR-ELRQFFKHAEQTMVQPDE 761 Query: 714 R 714 R Sbjct: 762 R 762 >UniRef50_UPI000180C89E PREDICTED: similar to BRIP1 n=1 Tax=Ciona intestinalis RepID=UPI000180C89E Length = 1145 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 117/783 (14%), Positives = 241/783 (30%), Gaps = 112/783 (14%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYL 65 K + ++ P F P Q M++ + K L E H +E+PTG GKTLS L Sbjct: 3 EEKPHVELMIGGVKIHFP-FKPYPSQLSMMSMIVKGLQRSE--HCLLESPTGSGKTLSLL 59 Query: 66 IPGIAIA-----------------------------------REEQKTLVVSTANVALQD 90 +A +E+ T+ T Sbjct: 60 CSALAWQQDLAMRLQKKEELYEQSNVDCAEEECCSIEQPPKEKEKVPTIWFGTRTHKQIA 119 Query: 91 QIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQ 150 QI + L + + C L + + T+ L P Sbjct: 120 QITHE----LATTQYRHVNMSILSSREHACIHPLNSQSKTKNEGCKELRKGIHPDLPGTH 175 Query: 151 EEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVA 210 + + K G+ D+ L R+ + CP++ A Sbjct: 176 CIFYQNVNRLRSHASLKNCGITQAWDLEDLVKLGTRVKS---------------CPYYAA 220 Query: 211 RREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAP 270 R + A ++ + ++ ++ D +N +++LDE H++ D +R+A +A T Sbjct: 221 RELQKTASIIFCPYNYLIDPSIRSSMQIDLQNDIVILDEAHNIEDSSREAASFTAVETDL 280 Query: 271 WYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL-------NNILN 323 + V + +E+ + + + +N H ++L E + + Sbjct: 281 MSTVADLEHLISVESNVEEHQKLHLVLSKMGGWMNKHVKDLKESAYETWSKVWTGEDFIP 340 Query: 324 LYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLH 383 G A+ + E + + + + + E+ ++ +S+ L Sbjct: 341 HLDEWGITADTLSLLVEAF--LKAVETKEEEEGGVEEEKKEMIMHSMSKSFLGALFDVLT 398 Query: 384 RLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH-LWFHCVGIRVSD 442 ++ + G + + W T +R+ + L H + + Sbjct: 399 YILASSKKFAGDYRVTMIRTAQFGIPPPKRTRD-GWVTINKRKSKFFLLKLHFWCLNPAV 457 Query: 443 QLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVI 502 L II+TS TL ++SFS GL + S ++ + Sbjct: 458 AFTDL--ADTRCIILTSGTLSPMSSFS---SELGLAFPIQLEAAHVIS------NSQVFV 506 Query: 503 PRMRVEPSIDNEEQHI--------AEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV 554 + P+ + + + V + G+L F+S + +++ + Sbjct: 507 GSLGCGPNGHRLQATYQNTNSLDFQDELGKLVQSVCNVVPYGVLCFFSSYKMLEKLCERW 566 Query: 555 T----------DLRLMLLVQGDQ--PRYRLVELHRKRVA-----NGERSVLVGL--QSFA 595 ++ G +++ VA + ++ + + + Sbjct: 567 KNTGLWYDICQKKEIVCEPHGRNKADFDGVLQNFYHTVAMVGTSDLTGALFLAVCRGKAS 626 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK----SLNRYPFEVQSLPSASFNLI 651 EGLD + V I FP V + + A L Sbjct: 627 EGLDFANNNARAVITVGIPFPNYRDKQVELKKTYNNFHCQDRGLLTGNDWYEIQAFRALN 686 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSP 711 Q +GR IR WG ++I D R ++ L + ++ + + +E + Sbjct: 687 QALGRCIRHRNDWGALIIVDDRFCQNP--RKYCKGLSKWVRQKVKSYDKFKVFEESLANF 744 Query: 712 RRR 714 +R Sbjct: 745 CQR 747 >UniRef50_UPI0000D55CB6 PREDICTED: similar to fanconi anemia group J protein n=1 Tax=Tribolium castaneum RepID=UPI0000D55CB6 Length = 750 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 99/741 (13%), Positives = 244/741 (32%), Gaps = 78/741 (10%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + + + P F P Q + + V L + +E+PTG GKTLS L +A Sbjct: 7 RGVPVKFP-FAPYDIQTKYMEKVIDCLENRQNG--ILESPTGTGKTLSLLCASLAWLEAR 63 Query: 76 QKTLVVSTAN------VALQDQIY-SKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALA 128 ++ + L IY S+ L + + ++K TA L Sbjct: 64 REKFAAQPKKCDDSPPITLPRIIYASRTHTQLSQAMQEMKRTA------------YNHLK 111 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + +D + + + N + + K K+ + + Sbjct: 112 ACVLGSRDQMCIDPEVIQEKNASFKVNLCRAKVKRKQCKYYQRIERASHVPPVSDLNIID 171 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLD 248 + L R C + CP+ +AR ++VV + ++ S+ + + +++ D Sbjct: 172 IEDVVKLGRECDF---CPYHMARELKNRSDVVFMPYNYLLDPRTSKNMDVEIFGNIIIFD 228 Query: 249 EGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHC 308 E H++ + D++ + + + + + V + E + + + Sbjct: 229 EAHNIEKICEDSVSVQIKSSDVDSAV------EDVESVNEVLTKGFVDVENVAFT-SEDL 281 Query: 309 EELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLN 368 + +++ N LN G+ E+ + + + + + L L+ Sbjct: 282 QTFSQMLTKFNRELNGIKQFKLTQAGSVFDGDYIFEMFKKAEIFEENSSGISDLIVGVLD 341 Query: 369 DLSEKT----GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREE 424 +S + + + L+ G Q + + + Sbjct: 342 FMSTTSYIQRSGFGLQIFNNLLFIAFYKQGPEFRQKIKECFKVQVEDERPEYVRRTRYSQ 401 Query: 425 REGQLHL--WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 + + + + L+ R+I +I+TS TL L + E Sbjct: 402 NMDKKNTCRVLNFWCFSPGFAMNMLMDRNIHCVILTSGTLAPLKPL--------ISELEL 453 Query: 483 DRFVALDSPFNHC-EQGKIVIPRMRVE-------PSIDNEEQHIAEMAAFFRKQVESKKH 534 + V +++P +Q + I + + +++ + + Sbjct: 454 EIGVRIENPHIVKGDQVCVKILSKGPDMEPLNSNFENRSNPKYLQSLGLVISNLIRVI-P 512 Query: 535 LGMLVLFASGRAMQRFLDYVTD----------LRLMLLVQGDQPRYRLVELHRKRVANG- 583 G+L+ F S MQ+ +++ + + + + + + ++ + Sbjct: 513 DGVLIFFPSYVIMQKTIEHWQNDGTWDSINRTKPIYIEPKDKIEFATAMSEYYAKIQDPS 572 Query: 584 -ERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK-SLNRYPFE 639 ++ +G+ +EGLD V I + +PP+ P +I + ++L ++ Sbjct: 573 YSGAIFMGVCRGKVSEGLDFADINGRAVFITGLPYPPLKDPKIILKKQYLDFRYSKNKEY 632 Query: 640 ----VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQP 695 A+ + Q +GR+IR +G +++ D R + + L ++ + Sbjct: 633 LKGDDWYSLEATRAINQAIGRVIRHKSDYGAIILLDSRFTNPR----IKNNLSLWLRQHI 688 Query: 696 EVPEGIVKKKEKTKSPRRRRR 716 + + + + + Sbjct: 689 TDMKNFGEIIRNVRVFFQNAQ 709 >UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=B8I7B6_CLOCE Length = 790 Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 104/673 (15%), Positives = 200/673 (29%), Gaps = 108/673 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 Q P R QR++ V KT+ +G+ L +APTG+GKT+S L P + E+ + + Sbjct: 186 QFPFKSYRRGQRELAVAVYKTIM--QGKKLFAQAPTGIGKTISTLFPAVKALGEQHISKI 243 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + Q+ + +++ + + + +C Sbjct: 244 FYLTAKTITRQVAEEAFSKMRECGLVFRTITLTAKDK-ICFNK----------------- 285 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 C KG + +D+ + Sbjct: 286 -------GGSCNPDFCEYAKGHYNRVN----------NAMEDVLNTSQNLSREVIEEYAL 328 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK--NLLLVLDEGHHLPDVAR 258 ++ CPF + A+ +V ++ + ++DE H+L D AR Sbjct: 329 KHKVCPFEFSLDLSLWADCIVCDYNYAFDPRVYLKRFFLNNTGDYAFLVDEAHNLVDRAR 388 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 + +A + + K I ++N++ L + A Sbjct: 389 EMFSAQIHKSAYL-------------EAKKLMKSKVPKVAKILNKINSYMVTLRKQCAE- 434 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 + + + + L+ + Sbjct: 435 -----------------------------------EGFIISKTELKDLYRLLNNFISESE 459 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L + + E +A + + + + Sbjct: 460 EWILKNQNNNIEGFEQLLEVYFDSIAFTRMADFYDERYVTFIET----KSMDVRVKLFCL 515 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L + + + SATL +N ++ G D + L SPF+ Sbjct: 516 DPSYLLSDAV-KRGKTAVFFSATLTPVN---YFMDILG--GDKEDYNINLASPFDKDNLC 569 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR 558 I + + ++ ++ + + +V F S + M T+ Sbjct: 570 L--IVNDNISTRYKSRDKSYDKIVDIIWSSISKRT-GNYVVFFPSYKYMNEVYTRFTEQY 626 Query: 559 LML--LVQGDQPRYRLVELHRKRVANGERSVLVGLQS----FAEGLDLKGDLLSQVHIHK 612 ++Q E R +G LV F+EG+DLKGD L I Sbjct: 627 PETNTIIQETSMTEEERESFLNRFQSGTEKSLVSFGVLGGIFSEGIDLKGDRLIGAIIVG 686 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + P + SP ++ K+ NR FE + ++Q GR+IRS G V++ D+ Sbjct: 687 VGLPQV-SPEQNIIMDYFKNKNRMGFENAYMYPGMNKVLQAAGRVIRSEHDVGTVILLDE 745 Query: 673 RLLTKNYGKRLLD 685 R NY + Sbjct: 746 RFSNGNYRRLFPK 758 >UniRef50_D0N844 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N844_PHYIN Length = 1058 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 113/761 (14%), Positives = 247/761 (32%), Gaps = 113/761 (14%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 + + P P Q + V L ++ + +E+PTG GKTL L +A RE Q Sbjct: 8 GIPVEFPFP-PYDSQLIYMEKVLLALTSKQ--NAILESPTGTGKTLCLLCATLAWRRELQ 64 Query: 77 ----------------------------------KTLVVSTANVALQDQIYSKDLPLLKK 102 ++ S+ + Q+ + LK Sbjct: 65 KKLGTNTLAPAKRPGPSLAYEGYGSDGESDAPQLPRIIYSSRTHSQLKQVVQE----LKN 120 Query: 103 IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGD 162 R ++ L T L + + +RC G Sbjct: 121 TSYRPNVAVLGSREHLCVNEKVSKLRGT-----------RQNLACRSTCKDRRCMHKLG- 168 Query: 163 LDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVA 222 D+Y + I ++L ++T K + CPFF+ R + EAE+V Sbjct: 169 FDSYAKRSKKQAQPIMDIEEL---VTTMKEKII---------CPFFLTRNMLPEAEIVFV 216 Query: 223 NHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKL 282 + ++ M ++ +N +L+ DE H++ +A +A + + Sbjct: 217 PYNYLIDPMARRSIGISIENSILIFDEAHNVESIASEAASYALSSND---------ISGC 267 Query: 283 VATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELP 342 ++ R + + + N E+ ++++ L + + ++ F E Sbjct: 268 ISEVDTFIRGLSTNSIQLNAGSNLTLED-----SAVSRCLRMEVLPRYPGQYIFEFFEQF 322 Query: 343 DEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKL 402 + E C + + E + +A + + ++ I + ++ Sbjct: 323 NVNFETCPLVLSMIEEIIEVAHGGDDSQRAASKLDTMLSFLGTIFRSKEQHLQAAKNYRV 382 Query: 403 WRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL 462 + + + + + + + F+ + ++ ++I+TS TL Sbjct: 383 H-IQEIRERPSNSGRLFNSGRKNKTTTTRVFNYWCFHPGVAFREICTNNVHNVILTSGTL 441 Query: 463 RSLNSFSRLQEMSGLKEK---AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 L++ + G+ + V D + + ++ + + E ++ Sbjct: 442 SPLDT---TVKELGIDFPVRLENNHVVDADQVWVGVVGTGVTGKKLNSSYNFRSTETYLL 498 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-----------------LRLMLL 562 E+ H G+LV F S ++ +D + + Sbjct: 499 ELGNTIVNFTRLVPH-GLLVFFPSYSILEESIDKWQRPATGQSALSIWDRIVQQKQTFVE 557 Query: 563 VQGDQPRYRLVELHRKRV-ANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPID 619 +G +V+ + + + N + +V + +EG+D D V I + FPP Sbjct: 558 PRGRADFKAVVDEYHQAIADNPKGAVFFAVCRGKVSEGIDFSNDKGRAVIITGLPFPPTK 617 Query: 620 SPVVITEGEWLKS------LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 P ++ + L + + AS + Q +GR+IR +G +++ D+R Sbjct: 618 DPKIMLKKSILDEAVVSPGELKLTGNAWYIQQASRAVNQAIGRVIRHRHDYGAIILLDER 677 Query: 674 LLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRR 714 K + L L + E + K+ + R Sbjct: 678 FALKQQQECLSKWLQPYCHTCRGYGEAHIGLTRFFKTNKTR 718 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 127/713 (17%), Positives = 255/713 (35%), Gaps = 84/713 (11%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 + YK + + + + R Q + + L + IEAP G GK+L+YL+ Sbjct: 235 TLKDLYKNVTQSL-NLTYRPQQLYLAEIILDQLMHSDK--AMIEAPLGSGKSLAYLLAAT 291 Query: 70 AIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALA 128 E + +++ST LQ Q+ KD+PLL ++ + + + Y+ ++ + Sbjct: 292 MYNIETGRHVMISTNTKLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISLGLISQIL 351 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW-DGLRDHTDIAIDDDLWRRL 187 + ++ L GD+ G + + D I+ + R Sbjct: 352 KDDTNNYEVSILKMQLLI-------WITETNTGDIQELNLKGGQKMYVDQKIETYVPVR- 403 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 + + +R Q ++ + NHA ++ + + + ++ Sbjct: 404 --------------HDIHYYNYIKRNAQNIQIGITNHAHLIHSDSENTIYQLFDDCII-- 447 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQL---DLFTKLVATCMEQFRPKTIPPLAIP--- 301 DE H LPD A + + + Y+L L + KL+ + + + + L I Sbjct: 448 DEAHRLPDYALNQVTNDLNYSDVKYQLGLIGKNENEKLLKAVDKLEQQRILEKLDIAPID 507 Query: 302 --------ERLNAHCEELYELIASLNNILNLYMPAGQEAEH--RFAMGELPDEVLEICQR 351 L+ E+L+ I ++ ++Y + + F GE+ ++ I + Sbjct: 508 VFGLKININELHDLNEQLFTTIYNIIQTSDVYDDDIHKYHYVYDFETGEILKDLRAIIDK 567 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 L K E+ G+ + + ++ + + QS Sbjct: 568 LNKTIEIFNGMNHKTIKSVRKQLLYLHD------------------------KFKLIEQS 603 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 T + + + + + V D L + + + S TL +SF Sbjct: 604 IKDHHTSFISIKNLAQKSTIRLLVKDYDVKDILTKQVLEKFKSLTFISGTLTFNHSFKAF 663 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 Q E + +P + +P + N + ++A + + + + + Sbjct: 664 QNW--FNEDIDFNTFEISTPLTSSNHTNVFVPNDVETYNYKNLDDYVASIVDYIVEYI-T 720 Query: 532 KKHLGMLVLFASGRAMQRFLDYVTDL----RLMLLVQGDQPRYRLVELHRKRVANGERSV 587 LVLF S + M D + +L ++L Q Y++V+ + N ++S+ Sbjct: 721 VTQSKCLVLFTSYKMMHMVQDLLNELPELEDYVILTQQQNQNYKIVQ----QFNNFDKSI 776 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L+G +F EG D + + L V I K+ F + + S F+ LP A Sbjct: 777 LLGTSTFFEGFDFQANGLKCVMIAKLPFMN----KHNIKYWLMDSEFTSTFKDYVLPDAV 832 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG 700 Q +GRLIR G +V +D RL+ Y +L F + + + Sbjct: 833 TRFRQGLGRLIRHEDDKGLIVSFDDRLVNSTYKSFFAQSLEHFKQRKGNIKQF 885 >UniRef50_Q7QEI1 Regulator of telomere elongation helicase 1 homolog n=1 Tax=Anopheles gambiae RepID=RTEL1_ANOGA Length = 988 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 116/780 (14%), Positives = 249/780 (31%), Gaps = 122/780 (15%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE-- 74 + P F P Q+ +A V + L + +E+PTG GKTLS L +A Sbjct: 8 GIPVNFP-FEPYELQKNYMAKVIECLQNKTNG--VLESPTGTGKTLSLLCSSMAWLLHMK 64 Query: 75 -EQKTLVVST------------------ANVALQDQ---------IYSKDLPLLKKIIPD 106 + + + T +ALQ Q S+ L + + + Sbjct: 65 SKHRMETIDTLPEPPELSNAKHAALDPEQALALQQQKANAKMKIIYASRTHSQLSQAMQE 124 Query: 107 LK-------FTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKL 159 LK + G +C + +L + + + AK Sbjct: 125 LKNTSYLFVRSIILGSRDQLCIHP-DISKQENNAIKTVLCRESVKARNCSFYNRVETAKD 183 Query: 160 KGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEV 219 + D+ T + D + + CP+++++ +++A+V Sbjct: 184 RPDVATVPVMDIEDLVTVG---------------------RKLKACPYYLSKELVEQADV 222 Query: 220 VVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLF 279 + + ++ ++ +N +++LDE H++ + + SA + + L ++ Sbjct: 223 IFMPYNYLLDPKARKSNGLSLQNTVIILDEAHNVEKMCEEV--GSALLRSSDIALAIEDT 280 Query: 280 TKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG 339 + ++ + M+ T E L E++ + ++ + Sbjct: 281 SSVIKSMMDGGGAWTGDGEKQLELTLDDLVLLKEILLGVEKAVDDIPILFSQGGTTHPGT 340 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGM---- 395 + D + + + +L+ + L + +EKTG VR + M L + Sbjct: 341 YIFDLLEKANVSFGNINVVLQVMNSLITHITTEKTGGF--VRRGAGLQSMVDFLEVVFAS 398 Query: 396 ------------FEAQSKLWRLASLAQSSGAPVTKWATREE----REGQLHLWFHCVGIR 439 F + LA+ W ++ + Sbjct: 399 SGPEYRQAVEKCFRVHIEPEEPKQLAKGGVKRADGWTATKQPLKAPVKSTSKVINFWCFN 458 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE-QG 498 + +L+ II+TS TL L F + E + V+L++P Q Sbjct: 459 PGFGMRQLVDSGTRSIILTSGTLAPLKPF--------ISELSLPVAVSLENPHIIARSQV 510 Query: 499 KIVIPRMRVE-------PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL 551 + + + + ++IA + + G+L+ F S + + Sbjct: 511 YVKVITHGPDRVELNSSFKNRSNPEYIASLGRTALS-LCPIIPGGLLIFFPSYPLLNKCS 569 Query: 552 DYVTDLR----------LMLLVQGDQPRYRLVELHRKRVAN--GERSVLVGL--QSFAEG 597 + + + +G + + +V + ++ + + +EG Sbjct: 570 EEWQASGIWGQISRLKQIFVEPRGKDQFTTTMAEYYAQVRDPASRGAIFMAVCRGKVSEG 629 Query: 598 LDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLK-----SLNRYPFEVQSLPSASFNLIQ 652 LD V I + FPP+ V+ + ++L AS + Q Sbjct: 630 LDFADANGRAVMITGLPFPPMMDARVVLKKQYLDTNRTRENELITGNDWYSLEASRAVNQ 689 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPR 712 +GR+IR +G +++ D R +L + E VP E ++ R Sbjct: 690 AIGRVIRHKDDYGAILLCDSRFQNARQQAQLSAWIHSHLRESSAVPNFGTVVGEMSRFFR 749 >UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUZ3_SYNAS Length = 917 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 143/688 (20%), Positives = 253/688 (36%), Gaps = 67/688 (9%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE- 75 L F R Q VA+ L +G L +EA TG GKT YLIP + Sbjct: 257 GLAGAAQGFKFRKTQLDYAFHVAEAL--NDGAVLTLEAGTGTGKTQGYLIPVMEYLHRNP 314 Query: 76 QKTLVVSTANVALQDQIYSKDLPL---LKKIIPDLKFTAAFGRGRYVCPRNLTALASTEP 132 + +++ST +LQDQI+ +++ L++ + G+ Y+C L + + Sbjct: 315 EARIMISTYTKSLQDQIFQQEINRTVALERGYSKISIAVLKGKSNYLCAEKLNSAFEEDL 374 Query: 133 TQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA 192 LLA+L + D +T R D L +S Sbjct: 375 KGASLLAWLYFVNLIFLYRQV--------DGETVGEKIGRYLNDGLYLRQLQDEISAKTG 426 Query: 193 SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHH 252 C + CP VA E + A +V+ NH + E + +N ++ DE +H Sbjct: 427 -CAG----NHTLCPAQVALAEARSARLVITNHHKLALIDHDEELSGLFRNCIV--DEANH 479 Query: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 R+A +S R D+ L + R + + ++ + E + Sbjct: 480 FEQAVRNAFSLSVHS-----REITDIIAYLESVLQRVSRKVSGEVEMMLQQCHETINEFH 534 Query: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSE 372 + + ++L P + E +++ +L L L+ L + Sbjct: 535 QTVHEFGSMLQTIHPYFAKGEILELPVCHGAYPDGDIEKMLRLFADLLRGIGKGLSFLKD 594 Query: 373 KTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLW 432 S + L R ++ A+ ++ ++ + V + H Sbjct: 595 PDASRVLKILPRSQERVRNAIARLYTEADNFQTMEKTIRTENTVA-----ACQLFFKHWV 649 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKA----------- 481 + VS ++ ++ +I TSATLR N F+ + G+ + Sbjct: 650 ITVSAVDVSSLIKAHVYNKRDCVIYTSATLRHRNRFNDFCRIVGMDDATGCDSISPAGKE 709 Query: 482 -----------GDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVE 530 RFVA+ SP++ K+ +P V +N++ + + + + Sbjct: 710 DRTFFTDQDGREFRFVAIPSPYSLES-MKVFLPDGAVNGGYENKQAWLKAVVDLLPELIR 768 Query: 531 SKKHLGMLVLFASGRAMQRFL-----DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGER 585 + LVLF+S ++ + + D +L+ Q +P L++ R + Sbjct: 769 KNR-GRTLVLFSSYSDLEAVALQTGDEIIADGYPLLIQQMGRPTGNLIDEFR----SIRE 823 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 SVL G+++F G+D +GD L+QV I +I FP P+ L F + Sbjct: 824 SVLFGVETFWYGVDFRGDTLTQVIITRIPFPYPFDPLQTARKGSLSKE---EFWSRYYYE 880 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 A L Q +GRLIRS G +V D R Sbjct: 881 AIIKLKQGMGRLIRSETDKGRLVFLDSR 908 >UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environmental samples RepID=Q64EP0_9ARCH Length = 644 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 132/707 (18%), Positives = 253/707 (35%), Gaps = 86/707 (12%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R QR+ + DV + + E G LA APTG+GKT++ L+P + A + KT+ Sbjct: 8 FFPFPSIREGQREFMEDVKQAV--EGGNILAAHAPTGIGKTVAVLVPALQYAIQNDKTVF 65 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 T+ + Q +I L L+K+ + +CPR A ++ + Sbjct: 66 FLTSKRS-QHKIAIDTLRLIKERAKLNFVVVDIISKQSMCPR-----AKAGSIYREFYSL 119 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + E++ R + + D +RD + W C Sbjct: 120 FSE---FCRSEQKNRRCRYFVNRDEEAQQRIRDKIMHVEELYEW--------------CS 162 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP----KNLLLVLDEGHHLPDV 256 + CP+ A + A+V+V ++ + ++ +E VL +++++++DE H+LPD Sbjct: 163 FRGVCPYKAALEVGESADVLVCDYNYLFSSDIAETVLEKIGKGLEDVIVIVDEAHNLPDR 222 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIA 316 R+ L ++ T E I + L EL + A Sbjct: 223 IRNNLSSELRMS----------------TITEAAHGLRRTNREIYDNL----MELETIFA 262 Query: 317 SLNNILNLYMPAGQEAEHRFAMGELPDEVLE--ICQRLAKLTEMLRGLAELFLNDLSEKT 374 L + F + + + + LR +AE +++ Sbjct: 263 KLAMAARKNKKEEMNVDRDFLVDGMEKVLRRKIVAMSYDDFVNSLRNIAERSGTSETDEN 322 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFH 434 + L R +L + L + K R+ S++Q + P H Sbjct: 323 TKYKDEALQRNVLNIADFLDEWRTNEKCLRIFSVSQHNENP----------------SLH 366 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA-LDSPFN 493 + S + + I+ S TL ++ + S + K + + SPF Sbjct: 367 FKLLDPS-IVSEPAFAGAHSTIMMSGTLCPAEMYAEILGASSDRIKGKEIVLREYKSPFP 425 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 + IV+ R E+ +++A + E + GM V F S + Y Sbjct: 426 EENR-LIVVTRGLTTKYTKRGEEMYSKIAGKIAEVAEYVQ-GGMAVFFPSYALQRDIAVY 483 Query: 554 VTDL-RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHI 610 + + R +V+ + R + + +L+ + SF+EG+D + ++L + + Sbjct: 484 LPEEVRRKAIVERREMRKEEKNRLYELLREDSGGILLAVQGGSFSEGMDFESNMLKAIIV 543 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQ-SLPSASFNLIQQVGRLIRSHGCWGEVVI 669 + P V EG + ++ A ++Q GR IRS +V+ Sbjct: 544 VGLPLSPPTLEVKTIEGYYAGKYGAEKGKLYGYYYPAITKVLQAAGRGIRSEHDRCIIVL 603 Query: 670 YDKRLLTKNYGKRLLDALP-VFPIEQPEVPEGIVKKKEKTKSPRRRR 715 D R Y + LP + ++ + + +E KS + R Sbjct: 604 MDYRFAKYPYK----NCLPSDYNVKLTD------RAEEFAKSFFKYR 640 >UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium perfringens RepID=Q8XL45_CLOPE Length = 781 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 124/671 (18%), Positives = 228/671 (33%), Gaps = 110/671 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R QR++ V K++ EG+ EAPTG+GKT+S L P + ++ + Sbjct: 186 NFPFKSYRKGQRELAIRVYKSIT--EGKKCFAEAPTGIGKTMSTLFPAVKALGAKETQKI 243 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 +I + L ++++ +L+ T ++ Sbjct: 244 FYITAKTTTREIANNTLRIMREKGLNLRSV--------------------NITAKEKCCK 283 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 ++++ +G D +IA+ + L + D +N+ Sbjct: 284 MEEKKCIPEY--------------CPYANGYFDRVNIALKEALRHKEEYD-LEYINKLSK 328 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD--PKNLLLVLDEGHHLPDVAR 258 Y CPF + +VV+ ++ + S + + K+ +++DE H+L D R Sbjct: 329 EYNICPFEFSLELSNFCDVVICDYNYIFDPQASLKGILEGKAKDYTILIDEAHNLLDRGR 388 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 +F +F+ K +R N + E +++ +L Sbjct: 389 SMYSS-------------KIFKDDFLKLKREFKSKDKGIYNSLDRANKYLIEKRKVLENL 435 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 L + + L +LRG E D+ E S + Sbjct: 436 ETKS-----------------------LVEKEEPSDLYGILRGFLEKV--DIYESKSSEE 470 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L L + L + + + + +L + Sbjct: 471 NSNLLELYFNVYEFLNICGYYGEDFTTLY-----------------KLDGNNLELSINCL 513 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L + + +I+ SATL + F L + GD V L SPF++ Sbjct: 514 DPSRIL-KSIMNRFKSVIIFSATLLPMEYFKEL-----YGAQEGDYSVNLTSPFDYKN-- 565 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR 558 K+ I V + N ++ + ++ + + +SK+ LV F S M + + Sbjct: 566 KLTIVGKDVSTTYSNRKRTLPKIVNYIIECAKSKR-GNYLVFFPSYEYMWMVHEEIKKRE 624 Query: 559 LM--LLVQGDQPRYRLVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLSQVHIHK 612 + L+ QGD E G +G F+EG+DL D L V I Sbjct: 625 VDFSLVAQGDHMNEEEKEEFLSLFKEGGEKTHLGLAVLGGHFSEGIDLTLDKLIGVIIIG 684 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + P I + E+ S+ + F+ + ++Q GR IR+ G V++ D Sbjct: 685 VGMPKICLER-ESIKEYYNSIGKNGFDYAYVYPGIIKVLQAAGRCIRTEKDKGVVLLLDD 743 Query: 673 RLLTKNYGKRL 683 R T Y L Sbjct: 744 RYFTNKYKSLL 754 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 120/703 (17%), Positives = 261/703 (37%), Gaps = 66/703 (9%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R Q + + L E IEA G GK+L+YL+ + E K +++ST Sbjct: 248 GLTYRPQQLYLAETILDQLMHSEK--AMIEASLGSGKSLAYLLAALMYNIETGKHVMIST 305 Query: 84 ANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLD 142 LQ Q+ KD+P + + + + + Y+ ++ + + + ++ Sbjct: 306 NTKLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNILKM 365 Query: 143 DELTPNNQEEQKRCAKLKGDLDTYKW-DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 L GD+ G + + D I+ + R Sbjct: 366 QLLI-------WITETPSGDIQELNLKGGQKMYFDQKIETYVPAR--------------- 403 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDAL 261 + + +R Q ++ + NHA ++ + ++ + ++ DE H LPD A + + Sbjct: 404 HDVHYYNFIKRNAQNIQIGITNHAHLIHSDVENSIYQLFDDCIV--DEAHRLPDYALNQV 461 Query: 262 EMSAEITAPWYRLQL---DLFTKLVATCMEQFRPKTIPPLAIPE----RLNAHCEELYEL 314 Y+L L + KL+ + + + + L I L A E++EL Sbjct: 462 TNELSYADIKYQLGLIGKNENEKLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHEL 521 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 L + + + + D++ T+ + ++ L++ Sbjct: 522 NEQLFSTIFTIINDSDVYD---------DDIHRFHNVFTFETKDILKDLHAIIDKLNKTL 572 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFH 434 + + + + L + + + ++ QS A T + + + + + + Sbjct: 573 EIFNGISHKTVKSLRKQLLYLKD------KFKNIEQSLKAGHTSFISIKNLSQKSTIRLY 626 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNH 494 V D L + + +I S TL+ +SF +++ + +++ Sbjct: 627 VKDYAVKDVLTKQVLEKFKSLIFISGTLKFNHSFDAFKQL--FNKDVHFNTFEVNTSLQS 684 Query: 495 CEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV 554 + + IP N ++++A + ++ + + LVLF S + M D + Sbjct: 685 AKNTSVFIPSDVASYQYKNIDEYVASIVSYIIE-YTTITSSKCLVLFTSYKMMHMVQDML 743 Query: 555 TDL----RLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHI 610 +L ++L Q Y++V+ + N ++++L+G +F EG D + + + V I Sbjct: 744 NELPEFEDYVVLTQQQNQNYKIVQ----QFNNFDKAILLGTSTFFEGFDFQANGIKCVMI 799 Query: 611 HKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 K+ F + + S F+ LP A Q +GRLIR+ G +V + Sbjct: 800 AKLPFMN----KHNAKYWLMDSEFTSTFKEYVLPDAVTRFRQGLGRLIRNENDRGIIVSF 855 Query: 671 DKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRR 713 D RL+ NY L + ++ ++ + K + + ++ Sbjct: 856 DDRLINSNYKNIFEQTLENYRQKKGDIQQ-FGKLLRQIQKKKK 897 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 328 bits (841), Expect = 4e-88, Method: Composition-based stats. Identities = 132/709 (18%), Positives = 242/709 (34%), Gaps = 63/709 (8%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 + K ++ + R Q +I + + + L +EAP G GKT S Sbjct: 247 SDNEKKELFK---------KNLRFRRGQVSLINRLHDFVYSDSDNSLVVEAPNGSGKTFS 297 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK-IIPDLKFTAAFGRGRYVCPR 122 YL+ A + LVV+T LQ+QI +++P L + DL Y+ Sbjct: 298 YLM-AYAYELYSGRKLVVATPTKVLQEQILKQEIPQLLRVTRLDLDAQIVKSSSHYLDLD 356 Query: 123 NLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDD 182 + L GDLD + + AI+ Sbjct: 357 GFYNSLYQTDNP------IQQTLILQMGILIWLTETETGDLDELQLTNYQAPLFAAIEHP 410 Query: 183 LWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKN 242 R+ T + + +AR ++A++++ NHA + +P Sbjct: 411 GDARIGTS----------FAEYDFWNLARSRQEQADILITNHAYLANHYMDSIWGQNP-- 458 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPW-YRLQLDLFTKLVATCMEQFRPKTIPPLAIP 301 LV+DE H + + S + + W L + + I Sbjct: 459 -FLVVDESHRFVENVASSRNDSLQFESFWGMCSHLRNLLFYAEDSAKARFGNNLEFKLIL 517 Query: 302 ERLNAHCEELYELIASLNNILNLYMPAGQEAEHR--------------FAMGELPDEVLE 347 ++L +L I + E + F + +L Sbjct: 518 DKLEKDTNDLIHSINKIQQAFYDNRKFATSWEEKRQNAITLGFQGQDLFNNIKHFKHLLN 577 Query: 348 ICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFE-AQSKLWRLA 406 + Q ++ L + ++D V + L ++++ E L +L+ Sbjct: 578 LMQDNIEIVRQETNQLLFLLYHQQKNLLTNDDVLIRDLQEEIDQLDYYSEQNYLLLDQLS 637 Query: 407 SLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN 466 + + L + + +++++ L+ + SATL + Sbjct: 638 DPKKLDHEGFV--LEISNEDDPLSTNLTWLTLDPEEEVKQ-LYHYFDKKLFISATLAEQD 694 Query: 467 SFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 FS + L K + A S F + K+ P N ++ ++ Sbjct: 695 DFSYTIKNLYLDPKKTLTYRAKPS-FKVEKHLKVYALSDNNAPEDPNSPEYETFISNLLT 753 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYVTD-----LRLMLLVQGDQPRYRLVELHRKRVA 581 + K + +LVLF + ++ +++ +L QG + KR Sbjct: 754 QI---KDYRHVLVLFTNLDVIRDVFSRLSENSNALKDYEILAQGLTGSNEKIA---KRFG 807 Query: 582 NGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR--YPFE 639 E+++L+G SF EG+D K + + + ++ F D P V E LK FE Sbjct: 808 IAEKAILLGANSFWEGIDFKHNGVDLAIVTRLPFESPDQPEVKLRTECLKKQVGADKIFE 867 Query: 640 VQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALP 688 V +LP A Q GRLIR+ G V+ D+R+ K+YG++ L LP Sbjct: 868 VDTLPRAILRFRQGCGRLIRNERDHGVFVVLDQRVWNKSYGEQFLSGLP 916 >UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=A6BD56_9FIRM Length = 658 Score = 328 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 145/729 (19%), Positives = 255/729 (34%), Gaps = 110/729 (15%) Query: 10 QIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGI 69 ++ ++ L + R Q ++ ++ L E +A G+GKT +YL I Sbjct: 14 EVEQIFRELLPE-AGLHVREEQIRLCHEMLDALMKNE--ITLCDAGVGIGKTYAYLTACI 70 Query: 70 A----------IAREEQKTLVVSTANVALQDQIYSKDLPLLKKII-------PDLKFTAA 112 + +++++VVST+++ALQ I + +P L ++ +LK Sbjct: 71 LMRKYSVLHSGYSGCDRRSVVVSTSSIALQKAIIEEYVPFLSDVLLKADLLQGELKAVVR 130 Query: 113 FGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLR 172 G+ +VC L + NQ + + L+ + Sbjct: 131 KGKEHFVCDYRLAQRLEAVRDKN------------KNQAQMEALKSLRHNF--------- 169 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEV--VVANHALVMAA 230 D + RRL C R C C + ++ ++ + NH ++A Sbjct: 170 DLDSVHNLSGFDRRLVCVPKFCP-RECPGKAGCRYQKHLDISRKEDIFLQICNHNYLLAD 228 Query: 231 MESEAVL---PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCM 287 A LV+DE H LP+ A S Sbjct: 229 AMHRANGYRPLLADYRALVVDEAHKLPEAASQMYGRSIGREDVQ---------------- 272 Query: 288 EQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLE 347 I + E + L E +++L + + G E E Sbjct: 273 ------EIAYFLVREHKGTDGKRLLEGVSALQMEIRKHRKDGIE-------DMAGKESFY 319 Query: 348 ICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS 407 ++ +L + L+ RL + L Sbjct: 320 FPPGAGTALAQMQERLQLMIKRLAGNIPYWTFRRLEEMEELFGWFLK------------- 366 Query: 408 LAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNS 467 ++ +++ + HL F V + L+ LW I+TS TL++ N Sbjct: 367 -------NDKRYILFLQQDSRGHLTFMAVNREIPKYLDTTLWSQGFPAILTSGTLKAGNG 419 Query: 468 FSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 F+R ++M+GL+++ G R +SPF + E + IP +P + ++A R Sbjct: 420 FARTRQMTGLEKETGVRECVAESPFCYQENCLLYIPEHL-KPRKKGSREEAEQLAGQIRD 478 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSV 587 V S + LVLF S M + D +VQ + + +K E +V Sbjct: 479 LVCS-TYGHTLVLFTSYTLMGNVQQLLRDQIPFPMVQVWRNSQEEIARFKK----MENAV 533 Query: 588 LVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 L S EG+D GD++S + I K+ F P+ + E +SL + + +P Sbjct: 534 LFAAGSCWEGVDFPGDMVSSLIIVKLPFSVP-DPIHEAQREQYRSL-KSYIQTIVVPDMQ 591 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTK-NYGKRLLDALPVFPIEQPEVPEGIVKKKE 706 L Q GR IR+ V I D R K Y +L+ALP ++ E I + ++ Sbjct: 592 KKLRQGFGRAIRTEQDTCVVSILDHRATKKGRYRSDVLEALPKC-----QMAERIEEVED 646 Query: 707 KTKSPRRRR 715 +S + R Sbjct: 647 FIRSRKVER 655 >UniRef50_Q0VGM9 Regulator of telomere elongation helicase 1 n=22 Tax=Bilateria RepID=RTEL1_MOUSE Length = 1203 Score = 328 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 109/789 (13%), Positives = 251/789 (31%), Gaps = 138/789 (17%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 + P F P Q++ + V + L ++ + +E+PTG GKTL L +A + + Sbjct: 8 GVTVDFP-FQPYPCQQEYMTKVLECL--QKKVNGILESPTGTGKTLCLLCSTLAWQQHLR 64 Query: 77 ------------------------------------------KTLVVSTANVALQDQIYS 94 ++ ++ + Q+ Sbjct: 65 DAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIR 124 Query: 95 KDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQK 154 + L+ K R + +C + +++ ++ Sbjct: 125 E----LRNTAYRPKVCVLGSREQ-LCIHPEVKKQESN----------HMQISLCRKKVAS 169 Query: 155 RCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREI 214 R +++ + + I+D L +N + CP++++R Sbjct: 170 RSCHFYNNVEAKFLEQDLATPILDIED-------------LVKNGSKQKMCPYYLSRNMK 216 Query: 215 QEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRL 274 Q+A+++ + ++ A +A D K +++ DE H++ + + S ++T Sbjct: 217 QQADIIFMPYNYLLDAKSRKAHSIDLKGTVVIFDEAHNVEKICEE--SASFDLTPRDVAS 274 Query: 275 QLDLFTKLVATCMEQFRPKTIPPLAIPER----LNAHCEELYEL---IASLNNILNLYMP 327 L++ +++ + + I + LN E++ +L + L ++ Sbjct: 275 GLEIINQVLEEQARVTQQGELQQEFIVDTSSSGLNMELEDIAKLKMILLRLEEAIDAVQL 334 Query: 328 AGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLIL 387 G + + + E +L L ++ + + L +L+ Sbjct: 335 PGDDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLAGRTGVFTNTAGLQKLMD 394 Query: 388 QMNRALGMF-----------EAQSKLWRLASLAQSSGAPVTK----WATREEREGQLHLW 432 + + S +++ ++S K W+T R+ L Sbjct: 395 IIQIVFSVDPPEGSPGSLVGLGISHSYKVHIHPETSHRRAAKRSDAWSTTASRKQGKVLS 454 Query: 433 FHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPF 492 + C S + L+ + + +I+TS TL L+SF+ ++ + Sbjct: 455 YWC--FSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIID----- 507 Query: 493 NHCEQGKIVIPRMRVEP------SIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 Q + I + + + G+LV F S Sbjct: 508 --KNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPV 565 Query: 547 MQRFLDYVTDLR----------LMLLVQGDQPRYRLVELHRKRVAN--GERSVLVGL--Q 592 M++ L++ L + + +++ + ++VA+ + + + Sbjct: 566 MEKSLEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRG 625 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS-LNRYP-------FEVQSLP 644 +EGLD V + + +PP P V+ + ++L R + Sbjct: 626 KASEGLDFSDMNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMRGRSGVGGQCLSGQEWYQQ 685 Query: 645 SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKK 704 AS + Q +GR+IR +G + + D R Y LP + +V + Sbjct: 686 QASRAVNQAIGRVIRHRHDYGAIFLCDHRFA---YADA-RAQLPSWVRPYLKVYDNFGHV 741 Query: 705 KEKTKSPRR 713 R Sbjct: 742 IRDVAQFFR 750 >UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E7F Length = 633 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 136/700 (19%), Positives = 248/700 (35%), Gaps = 111/700 (15%) Query: 24 DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVST 83 R Q M ++A+ +A + LA+EA G+GK+++YL+P + E+K ++++T Sbjct: 23 GLQRRPGQIAMSQEIAQAIADN--KSLAVEAEVGIGKSIAYLVPLVIQYFRERKQMIIAT 80 Query: 84 ANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDD 143 + +ALQDQ+ S L +L+ + A G YVC Sbjct: 81 STIALQDQLESDILNVLELLGVRADVEIAKGMKNYVCLERFHRFTREHKD---------- 130 Query: 144 ELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYR 203 D K+ GL+ D+ + D++W ++ + C + Sbjct: 131 ---------------YTRQFDRAKY-GLQLRQDVYVPDEVWDKICINSFGDKCSECSFRH 174 Query: 204 ECPFFVARREIQEAE-VVVANHALVMAAMESEAVL---PDPKNLLLVLDEGHHLPDVARD 259 +C + + R I+ + +V+ N ++++ E P LV+DE H+L + RD Sbjct: 175 KCEYSLMRERIRNKDEIVICNQNMLVSHFIKEESGEGIFKPDFSTLVVDEAHNLENNFRD 234 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 A + E + + R+ + + + L Sbjct: 235 AFTTAYSQKEIS---------------NEVLKATENRKNILSSRIVEIIQMVDDFFKYLK 279 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 ++ + ++ + +R L + + E Sbjct: 280 YDIHQQQSKSID---------------DMRTYYYRPIREVRKLVLRIRSAMLEIE----- 319 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 +L L W T E+ + + Sbjct: 320 ----------------MRTNRRLNCLQMFRNLENKDCLVWLTTEK-----GVRVNICKKD 358 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNS------FSRLQEMSGLKEKAGDRFVALDSPFN 493 + ++ RLL+ I+TSAT+ S NS + G SP+N Sbjct: 359 IRREIGRLLFTESRRTILTSATITSQNSGTLSEKYRYFLNNLGCPNNVCVSEPK-KSPYN 417 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 + + + + P+ N + K + + L+LF + MQ Sbjct: 418 YDKHSIMYVSDKLPIPNKRNRTAYRNAAIKEIVKLL-NITEGKALILFTAKDDMQYVFKK 476 Query: 554 VTDLRLM--LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIH 611 ++++ L ++VQ + E ++ N SVL+G ++ EG+++KG+ LSQV I Sbjct: 477 LSNMGLPYKIMVQDESTTQ---ERRLEKFQNNVNSVLLGTGTYWEGINIKGESLSQVIIF 533 Query: 612 KIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYD 671 K+ FP P+V + P ++P L Q VGRLIRS G V I D Sbjct: 534 KLPFPVP-DPIVEYKM----RKTECPLMDVAVPEMIIKLKQGVGRLIRSSEDKGIVSILD 588 Query: 672 KRLL---TKNYGKRLLDALPVFPIEQ--PEVPEGIVKKKE 706 R+ Y + L +LP + E+ E + KE Sbjct: 589 PRVSKSQNTAYREDTLASLPEKNTTEDITELEEFWNRIKE 628 >UniRef50_Q9NZ71 Regulator of telomere elongation helicase 1 n=42 Tax=Bilateria RepID=RTEL1_HUMAN Length = 1219 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 113/763 (14%), Positives = 254/763 (33%), Gaps = 86/763 (11%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 + P F P Q++ + V + L ++ + +E+PTG GKTL L +A E Sbjct: 8 GVTVDFP-FQPYKCQQEYMTKVLECL--QQKVNGILESPTGTGKTLCLLCTTLAW--REH 62 Query: 77 KTLVVSTANVALQDQ---IYSKDLPLLKKIIP----------DLKFTAAFGRGRYVCPRN 123 +S +A + Q + L D+ R + Sbjct: 63 LRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQV 122 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYK-WDGLRDHTDIAIDDD 182 + L +T + + ++L + + +++ L+ L K + + Sbjct: 123 INELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRSCHFYNNVEEKS 182 Query: 183 LWRRLSTD--KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 L + L++ L ++ +R CP++++R Q+A+++ + ++ A A D Sbjct: 183 LEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL 242 Query: 241 KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI 300 K +++ DE H++ + + S ++T LD+ +++ + + P Sbjct: 243 KGTVVIFDEAHNVEKMCEE--SASFDLTPHDLASGLDVIDQVLEEQTKAAQQGEPHPEFS 300 Query: 301 PER----LNAHCEELYEL---IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 + LN E++ +L + L ++ G ++ + + E Sbjct: 301 ADSPSPGLNMELEDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQITFQ 360 Query: 354 KLTEMLRGLAELFLNDLSEK------TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLAS 407 +L L ++ + G + + +++ ++ + G + + L L S Sbjct: 361 TKGCILDSLDQIIQHLAGRAGVFTNTAGLQKLADIIQIVFSVDPSEGSPGSPAGLGALQS 420 Query: 408 LAQSSGAPVTK---------WATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVT 458 W+T R+ L + C + L+ + + +I+T Sbjct: 421 YKVHIHPDAGHRRTAQRSDAWSTTAARKRGKVLSYWC--FSPGHSMHELVRQGVRSLILT 478 Query: 459 SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPS------ID 512 S TL ++SF+ ++ + Q + + + + Sbjct: 479 SGTLAPVSSFALEMQIPFPVCLENPHIID-------KHQIWVGVVPRGPDGAQLSSAFDR 531 Query: 513 NEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD----------LRLMLL 562 + + G+L+ F S M++ L++ L + Sbjct: 532 RFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVE 591 Query: 563 VQGDQPRYRLVELHRKRVAN--GERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPI 618 + + + RVA + + + +EGLD V + + +PP Sbjct: 592 PRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPR 651 Query: 619 DSPVVITEGEWLKSLNRYP--------FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIY 670 P V+ + ++L + + AS + Q +GR+IR +G V + Sbjct: 652 MDPRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLC 711 Query: 671 DKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRR 713 D R + + LP + V + R Sbjct: 712 DHRFAFADARAQ----LPSWVRPHVRVYDNFGHVIRDVAQFFR 750 >UniRef50_Q8SSE9 ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSE9_ENCCU Length = 678 Score = 326 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 104/727 (14%), Positives = 219/727 (30%), Gaps = 108/727 (14%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI------------- 71 F P Q + + L +E+PTG GK+LS + + Sbjct: 15 FEPYPAQIVTMTKLISCLMTRTSG--LVESPTGTGKSLSIICAVLGYNEHLKRSIRGIGA 72 Query: 72 ------------AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYV 119 AREE+ +++ + DQ+ L+K + + R +Y Sbjct: 73 KRREGGGPKGEEAREEKLKIIICSRTHKQLDQLVD----QLRKTQYRPRISILASRAQYC 128 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 L+ +A +L+ K+ D++ K +G R Sbjct: 129 ISPKLSDVADKNTGCSELVKSGSCAYFTGKDRLAKKVGDKIFDIEELKGEGRR------- 181 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD 239 C+ CP++ +R ++AEV+ A + ++ + E+ Sbjct: 182 --------------CVG--------CPYYASRILNEDAEVIFAPYNYLIDSRIRESTGIS 219 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 +N ++++DE H++ DV R + + + ME + + + + Sbjct: 220 LENSVVIVDEAHNIEDVCRSSGSIELS-----------------SRIMEIIQNEILGAVK 262 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 L + + L + E + A G+L + + + Sbjct: 263 RSGALGEIRMDFVN-LMDFFRKLREGAESTDEFDRVTAGGKLRIRKGREIKEELERMGIG 321 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + N + S D L + + E + + Sbjct: 322 KEFVLKIKNSIYAIQKSEDAKDLLNV-----STFHVLEGLDSVLSAIHFSDCDAYSFVFH 376 Query: 420 ---ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSG 476 + ++ + + + +++ S TL FS G Sbjct: 377 KMNDENVKNSRSCRFSYNFWLLDGGYTFRSFV-GKVRSVVLLSGTLTP---FSSFSSELG 432 Query: 477 LKEKAGDRFVALDSPFNHCEQGKIVIPRMRV-------EPSIDNEEQHIAEMAAFFRKQV 529 + L + +Q + R + + Q++ ++ Sbjct: 433 HEFAHTIVAPHLIT----QKQVFVSCVRKGHLLKELIGTYGVSDTPQYLDQLCRVIVDVS 488 Query: 530 ESKK-HLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGD----QPRYRLVELHRKRVANGE 584 K H G LV S ++ + + LLV+ +++ ++ R+A + Sbjct: 489 CKIKDHGGTLVFVPSYSFLENLQKRMGGVSSGLLVEPKSGAGNEFEKVMRRYKNRIATKQ 548 Query: 585 RSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQS 642 +V + + +EG+D K V I +P + P V + E+ + + Sbjct: 549 SAVFMCVYRGKASEGIDFKDSFARAVIAVGIPYPSLHDPQVELKKEFNDKYKSFNGRLWY 608 Query: 643 LPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIV 702 A + Q +GR IR WG V++ D R K +L + + Sbjct: 609 EAQAFRAVNQALGRAIRHKDDWGIVMLLDSRYSEKRVQSQLSKWVAENIKTYDSYDGCVS 668 Query: 703 KKKEKTK 709 + Sbjct: 669 ELVRFLS 675 >UniRef50_UPI000186CB9B regulator of telomere elongation helicase 1 rtel1, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB9B Length = 1016 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 124/743 (16%), Positives = 249/743 (33%), Gaps = 92/743 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + P IP Q+ + V L +E H +E+PTG GKTL P A A+ + Sbjct: 7 RGYDVSFPYPIPYDIQKSYMNKVLTCL--DEKTHAVLESPTGTGKTLCLFAPVTAWAKRK 64 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALAST--EPT 133 +K VV QD + P + + + R + +A T E Sbjct: 65 KKNAVVHVT----QDSNKELNSPHFESTEHQGPWGVKSKSKVWYTARTHSQIAQTVSEVR 120 Query: 134 QQDLLAFLDDELTPNNQ--------------EEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 + D+ + +Q + +C +L + L D Sbjct: 121 KCDIEGLHVRVMGARDQLCINELVLEEKDSYIKTVKCKELVKSKKCKYYTKLSYEKDFKR 180 Query: 180 DDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD 239 L + + ++C CP+F+A+R + A++++ + ++ E+ Sbjct: 181 FYQSGEVLDIEDLVSIGKSC---GICPYFLAKRASETADILLLPYNYIIDRESRESNGLQ 237 Query: 240 PKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 +N +++ DEGH++P + T+ + + ++ + + Sbjct: 238 LQNDVIIFDEGHNVPSTCEE--SYEFSFTSLDVAIGIKNIQDVMLSLSKLTEDLIEDEEI 295 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + ++ + E++ L + L+ +E+L + + L+ + Sbjct: 296 DVSKHVSNSMMMVEMLQKLESALSEM--------------NASNELLPVSELYNFLSSAV 341 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 L + + S+ + + + + + S+ S Sbjct: 342 --LIDGISSFKSDSEKLSLTGSTLETFNLLEKMMSVMYGSTVRSFDKSIVDRSFK--CVI 397 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 T ER +C S ++ LL II+TS TL L +F GL + Sbjct: 398 TTDPERHFAKKFSLYC--FNPSFGIKSLLALGSQSIIITSGTLSPLRTFIY---ELGLPK 452 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVE-------PSIDNEEQHIAEMAAFFRKQVESK 532 + Q VI V N+ ++++ + + S Sbjct: 453 PVTLENKHIA----KKCQVPFVILGTGVNNVKMDGAYKNRNDPKYVSSLGMSLTNLIASI 508 Query: 533 KHLGMLVLFASGRAMQRFLDYVTD-----------LRLMLLVQGDQPRYRLVELHRKRVA 581 G+L+LF+S MQ + R+ + + +E +R+ + Sbjct: 509 -PDGILLLFSSYTMMQSLKESWEKDLGIWTRLNSLKRVFVEPRNKNEFINCMENYRRAID 567 Query: 582 NGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW------LKSL 633 +G ++L+G+ +EG+D K V I + FPPI VI + ++ Sbjct: 568 SGNGAILMGVLRGKISEGMDFKDQYCRGVFIIGVPFPPIQDLRVIGKQKYSESLMIYNEK 627 Query: 634 NRYPFEVQSLP----SASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN----YGKRLLD 685 + ++ + P A Q +GR+IR +G +++ D R L D Sbjct: 628 TKTEEKLYNQPYLSIEAMKATNQAIGRVIRHGKDYGVIILVDYRFAWPRLFYNISSWLRD 687 Query: 686 ALP---VFPIEQPEVPEGIVKKK 705 P FP + + + Sbjct: 688 DFPTESNFPTAKKLISDFFKNVH 710 >UniRef50_A9CS00 DNA repair helicase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CS00_ENTBH Length = 670 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 99/738 (13%), Positives = 231/738 (31%), Gaps = 112/738 (15%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 P + P Q Q + + K+ + IE+PTG GK+L+ L + ++ Sbjct: 7 GGYTVWFP-YKPYPAQIQTMETMLKSFGS--SKCALIESPTGTGKSLAILCAVMGYLEKK 63 Query: 76 QKTLVV---------------------------STANVALQDQIYSKDLPLLKKIIPDLK 108 ++ + DQ+ + L+K + + Sbjct: 64 DLNDIIDPKKRRIDNDTENFVNNNQIGNPTIYICSRTHKQIDQLIN----QLRKTKYNPR 119 Query: 109 FTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW 168 + R +Y L +DL+ +K+ + + Sbjct: 120 ISILGSRKQYCINSQLRRALDINTACKDLIDTKRCIYKSGVSRLKKQISNIYD------- 172 Query: 169 DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVM 228 + C CP+F +R EAE++ A + ++ Sbjct: 173 ---------------IEEIRNSGKKCGG--------CPYFASREIANEAEIIFAPYNYII 209 Query: 229 AAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCME 288 +++ + KN ++++DE H++ D R ++ + M Sbjct: 210 DPHIRKSLDIELKNAIVIIDEAHNIEDTCRSVGSFELN-------------SRTLDIWMS 256 Query: 289 QFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEI 348 + + + + +L E I +++ ++ ++ G E L+I Sbjct: 257 ELLSSARKAILLEGSIENDFLQLSEFIKKFKTKIDIQFEKSRDFHYKVFKGTYMIEQLKI 316 Query: 349 CQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVR--LHRLILQMNRALGMFEAQSKLWRLA 406 + + + ++ K ++ L L + L ++ Sbjct: 317 LGITQVSLNLFQSNIKNIRDNEKAKALLSQNLQQGLESLDFVLKNILTNRAKDEYIFCFK 376 Query: 407 SLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLN 466 + W + S L + II+ S TL Sbjct: 377 QFVKDKSFAYCFWL-----------------LDPSIIFA-GLRNEVRSIILLSGTLTPFA 418 Query: 467 SFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFR 526 +F+ +++ + + + F + + + SI N ++++++A Sbjct: 419 TFTSELKVNFENKLIAPHILVSNQVFVANIKKGHLKTELTGTYSIANTPEYLSQIATIIE 478 Query: 527 KQVESK-KHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYR-----LVELHRKRV 580 + G LV S +++ + + L ++V+ D L+E K Sbjct: 479 NIATQIHIYGGTLVFVPSYVFLKKLHNKMK---LPVIVEPDTNSTEKFDATLIEYENKLK 535 Query: 581 ANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPF 638 + ++ + +EG++ + V I +P I+ P + T+ E+ ++ + Sbjct: 536 DSSHPAIFFCVYRGKASEGINFQDKYARAVIGIGIPYPSINDPQITTKKEYNSTIKNFGG 595 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 + A + Q +GR++R G WG V + + R T ++ LP + + Sbjct: 596 SEWYMIQAIRAVNQALGRIVRHPGDWGAVFLLETRYQTP----QIRKQLPQWITRSIKDY 651 Query: 699 EGIVKKKEKTKSPRRRRR 716 + K ++ Sbjct: 652 DTFDDCKNDFIKFLSEKK 669 >UniRef50_UPI00015B5E86 PREDICTED: similar to regulator of telomere elongation helicase 1 rtel1 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5E86 Length = 1050 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 108/746 (14%), Positives = 234/746 (31%), Gaps = 118/746 (15%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 + + P F P Q + V + L +EG++ +E+PTG GKTLS L + ++ Sbjct: 8 GVVIKFP-FKPYQVQEDYMKKVIECL--QEGKNGVLESPTGTGKTLSLLCSSLGWLMIKK 64 Query: 77 KTLVVSTANVALQDQI------YSKDLPLLKKIIPD-------------LKFTAAFGRGR 117 + + ++ DQ+ + L K + R Sbjct: 65 AQIQIQVQSLGALDQVGSGNSYLDQFAKSLDKGGGKSTNQAPTNTFGWSMPKIIYASRTH 124 Query: 118 YVCPRNLTALASTE--------PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWD 169 + + L T +D L + Q + + + Sbjct: 125 SQLSQAMQELKRTSYRHVSVTVLGSRDQLCIHPE--VAKEQNTSNKIHMCQAKIKARNCF 182 Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229 + D + + L + + CP+F+++ Q A+++ + ++ Sbjct: 183 YYNNVELRKDDPTIKDNI--LDIEDLVKTGQKLKCCPYFLSKELKQNADIIFMPYNYLLD 240 Query: 230 AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 + + +N +++LDE H++ + DA + T + + M+ Sbjct: 241 PKTRKNQGIELQNNVVLLDEAHNVEKMCEDAASLQISSTDIAVCI------DEITHVMKD 294 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEIC 349 +T + E NA ++ Sbjct: 295 MANETNDQDFLSEGSNAAQKDFSA------------------------------------ 318 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 E L L +FL R + E L Sbjct: 319 -------EDLCILKAMFLELEKAIDSIQITKRDEGDTYPGGYIFEILEKADITQGKELLV 371 Query: 410 QSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 + + T + + L +++LL + + +I+TS TL L F Sbjct: 372 IDKLDKIVTYLTTKITKTDGKL-ISYWCFSPGFGMQQLLDQGVRSVILTSGTLSPLKPF- 429 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMR-------VEPSIDNEEQHIAEMA 522 G++ A + S +Q + I + N+ ++IA + Sbjct: 430 --ISEIGIEIGAQLENPHIVS----NKQICVGIISNGYDGCSLNSSYNTRNDPKYIASLG 483 Query: 523 AFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR----------LMLLVQGDQPRYRL 572 K + GML+ F S M++ + + + + Q + + Sbjct: 484 ETI-KILSCILPHGMLIFFPSYPIMKKCQEEWQKMGKWSQIEASKPIFVEPQSKEGFNNV 542 Query: 573 VELHRKRVANG--ERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGE 628 + + K++ + + ++ + + +EGLD V I + FPP+ P +I + Sbjct: 543 MTEYYKKIHDPAHKGAIFMAVCRGKVSEGLDFANANGRAVLITGLPFPPLKDPRIILKQR 602 Query: 629 WLKSLNRYP-----FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 +L+ + AS + Q +GR+IR +G +++ D R ++ + L Sbjct: 603 YLEENRASGKESLSGQQWYQLEASRAVNQAIGRIIRHKNDYGAILLCDCRFDNPSFKQHL 662 Query: 684 LDALPVFPIEQPEVPEGIVKKKEKTK 709 + + + + + +E + Sbjct: 663 SSWIRPHIKKFQDFRMVVKELREFFR 688 >UniRef50_A7SA32 Predicted protein n=3 Tax=Eumetazoa RepID=A7SA32_NEMVE Length = 1082 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 113/770 (14%), Positives = 245/770 (31%), Gaps = 93/770 (12%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + + P F P Q + V + L + ++ +E+PTG GKTL L +A + Sbjct: 5 RKVDVDFP-FKPYDCQVAYMEKVIECL--QTRKNAVLESPTGTGKTLCLLCATLAWRQSY 61 Query: 76 QKTLVVSTA------------NVALQDQIYS------KDLPLLKKIIPDLKFTAAFGRGR 117 L + +L +++ D K ++ R Sbjct: 62 VANLQLQQRGLCAAKEEEDGFQKSLGNKLAEAASGTWDDSCSNKGSNFEIPKIIYASRTH 121 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQK-----RCAKLKGDLDTYKWDGLR 172 + + L +T + + ++L N+ ++ + + + Sbjct: 122 SQLSQAVQELKATVYRPRVSIIGSREQLCINSDVLKQDSNSAKVHMCRAKVTARTCHFYN 181 Query: 173 DHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME 232 + + + L R ++ CP+++AR A+++ + ++ Sbjct: 182 NLEGNKSNPAFTTEI--LDIEDLVRLGQKHKVCPYYMARELKTSADIIFMPYNYLLDPKS 239 Query: 233 SEAVLPDPKNLLLVLDEGHHLPDVARDALEMSA-EITAPWYRLQLDLFTKLVATCMEQFR 291 +A D ++V DE H+L V + + + L + VA + Sbjct: 240 RKAHNLDISGSIVVFDEAHNLEKVCEETVSFDLTSFDIASCVEDVLLCMEYVANAEDDPD 299 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGEL---------P 342 PE L + L+ + + + L + F L Sbjct: 300 IGEGGTDIDPEDL-KVLKALFSKLEEEIDQIQLPSDGSKSFPGDFMFELLGNVGIKPNTK 358 Query: 343 DEVLEICQRLAKLTE--------MLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG 394 D VLE +++ L L+ + ++ ++ +Q+ Sbjct: 359 DRVLETLEKINTLLANGLRGKHFALQKFTDALQIVFNKTDKGPKSGNSFKVHVQVEPDSK 418 Query: 395 MFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPH 454 + +W S G + + + + H ++ L+ + + Sbjct: 419 KKQKGLDIWTSGSKLSKKGTSSLYFYSFF---MRTMIMIHYWCFSPGHAMKDLMSQGVSS 475 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE-QGKIVIPRMRVE----- 508 +I+TS TL LNSF+ E + L++P + Q + + + Sbjct: 476 VILTSGTLSPLNSFTA--------EMQIPFPIRLENPHVIEKHQMMVAVVTKAPDGATLN 527 Query: 509 --PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL------- 559 + ++ + + G+LV F S M + L++ + + Sbjct: 528 SSYEFRSTPGYMTGLGNTIANFARTI-PNGLLVFFPSYPVMNKCLEHWQNTGIWARLSQY 586 Query: 560 ---MLLVQGDQPRYRLVELHRKRVANG--ERSVLVGL--QSFAEGLDLKGDLLSQVHIHK 612 +G + +E ++ + + + +EGLD V I Sbjct: 587 KPMFAEPRGKGDFVQTMEDFYAKINDPSLNGATFFAVCRGKVSEGLDFSDINGRAVVITG 646 Query: 613 IAFPPIDSPVVITEGEWLKSLNRY--------PFEVQSLPSASFNLIQQVGRLIRSHGCW 664 + FPP+ V + +L ++R AS + Q VGR+IR + Sbjct: 647 LPFPPMMDAKVKLKMSFLDEMSRKDKSAIKGLTGREWYRQQASRAVNQAVGRVIRHRQDF 706 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRR 714 G +++ D R Y L + LP + Q ++ + + + R+ Sbjct: 707 GAILLCDVRFT---YPDALRE-LPSWVKPQVKIFKEFGHVQRELIQFFRK 752 >UniRef50_UPI0000DB6B80 PREDICTED: similar to CG4078-PA n=1 Tax=Apis mellifera RepID=UPI0000DB6B80 Length = 928 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 108/772 (13%), Positives = 248/772 (32%), Gaps = 102/772 (13%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 + P F P + Q + +A V + L ++ +E+PTG GKT ++ Sbjct: 8 NIIINFP-FKPYSIQEEYMAKVIQCLQN--SKNGVLESPTGTGKT---------LSLLCS 55 Query: 77 KTLVVSTANVALQDQIYSKDL----------PLLKKIIPD-------------LKFTAAF 113 + T LQ Q + L + Sbjct: 56 SLSWLLTKKAQLQAQSLVNTIEEPNFGGHFFKQLNNGLKKSTGDSESITFNWNAPKIIYA 115 Query: 114 GRGRYVCPRNLTALASTE--------PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDT 165 R + + L T +D L + N + K T Sbjct: 116 SRTHSQLSQAMQELKRTSYKHVGTAVLGSRDQLCIHPEVSKETNSSNKIYMCHSKVKSRT 175 Query: 166 YKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHA 225 + ++ + DD +++ L + ++ CP+F++R Q A+++ + Sbjct: 176 CFY---YNNIESRKDDPFFKQ-EILDIEDLVKAGQKFKCCPYFLSRELKQNADIIFMPYN 231 Query: 226 LVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVAT 285 ++ A + D +N +++ DE H++ + + S +I++ + +D T ++ Sbjct: 232 YILDAKSRKIQGIDIQNNIILFDEAHNIEKICEE--TASLQISSTDIAMCIDEITVVMED 289 Query: 286 CMEQFRPKTIPPLAIPERLNAHCEE-----LYELIASLNNILNLYMPAGQEAEHRFAMGE 340 + + + E + L + L ++ ++ F G Sbjct: 290 MAKDIEQQNNFLMENSENVQKDFTADDLCILKAMFLELEKAIDAISIVKRDEGDTFPGGY 349 Query: 341 LPDEVLEICQRLAKLTEMLRGLAELF--------LNDLSEKTGSHDIVRLHRLILQMNRA 392 + + + + + ++ L ++ + L + + + Sbjct: 350 IFELLGKAQLIHGREQLVIEKLEKIVFYLTTTSTSPFTRKGNALQKFSDLLKTAFSSDNS 409 Query: 393 LGMFEAQSKLWRLASLAQSSGAP--VTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR 450 L E + +++ + W ++ + +++L + Sbjct: 410 LFSKEKIKQYYKVYIQLEEHKKSKQNDVWDKKKILSKNEGKIINYWCFSPGFSMQQLKNQ 469 Query: 451 SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVE-- 508 II+TS TL L F G+ + +S +Q + I + Sbjct: 470 GARAIILTSGTLSPLKPF---ISELGIPIEVQLE----NSHIVKEDQICVGILSQGPDGY 522 Query: 509 -----PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL---- 559 + N+ ++I + G+LV F S M++ + + L Sbjct: 523 SLNSSFNTRNDPKYIRSLGQTIFNFSCLV-PYGLLVFFPSYPIMKKCKEEWQNTGLWTKI 581 Query: 560 ---MLLVQGDQPRYRLVELHRKRVANG--ERSVLVGL--QSFAEGLDLKGDLLSQVHIHK 612 +++ ++ + +++ + ++ + + +EGLD V I Sbjct: 582 ADRKVIIFNKDGFINVMNEYYEKIKDPSCTGAIFMAVCRGKVSEGLDFANANGRAVLITG 641 Query: 613 IAFPPIDSPVVITEGEWLKSLNRY-----PFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 + FPP+ P VI + +L+ + + + AS + Q +GR+IR +G + Sbjct: 642 LPFPPLKDPRVILKQRYLEEIKKQDKEALSGQQWYQLEASRAVNQAIGRIIRHKNDYGAI 701 Query: 668 VIYDKRLLTKNYGKRLLDALPV-------FPIEQPEVPEGIVKKKEKTKSPR 712 ++ D R ++ K+L L F I E+ + P Sbjct: 702 ILCDYRFDNPSFKKQLSAWLRPHIKNFTCFGIIVKELKGFFRYAEHTFPQPN 753 >UniRef50_A0CAB5 Chromosome undetermined scaffold_161, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CAB5_PARTE Length = 722 Score = 324 bits (830), Expect = 8e-87, Method: Composition-based stats. Identities = 123/719 (17%), Positives = 254/719 (35%), Gaps = 60/719 (8%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 L+ P Q + + + +TL +E H +E PTG GKT+S L IA + Sbjct: 6 DDLEVIFPYKFLYKEQLEYMQALKQTL--DEKGHGILEMPTGTGKTVSLLALIIAYLAQR 63 Query: 76 QKTL---VVSTANVALQDQIYSKDLPLLK----KIIPDLKFTAAFGRGRYVCPRNLTALA 128 T+ + T V ++ + +LK + + D + +C + Sbjct: 64 PNTVKKLIYCTRTVVEMEKTLEEVRLVLKARKAEGLNDNFTAVGLSSRKNLCINP-DVIN 122 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + + + + E D Y+ G ++ D Sbjct: 123 QKDRVDAECRKRTAEWVKRGQNETCI-------FYDNYEKSGKETIANLPHD-------- 167 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD-PKNLLLVL 247 + L +N Y +CP+F AR +++A +VV N+ ++ S + D K ++V Sbjct: 168 VYSLNDLRKNGAYSIQCPYFTAREMVKKANIVVYNYLYLIDPTVSSQLTKDQIKESVVVF 227 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H++ DV +A + RL + + + I RLN Sbjct: 228 DEAHNIDDVCIEAYTV---------RLNKPILAEAINNLKVVETQIQSETNEIQNRLNEE 278 Query: 308 CEELYELIAS-LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 ++L + + LN + GQ + R + + + + ++L +E L+ + Sbjct: 279 YKKLIKNLEKKPEGELNQLVIPGQIRKARNFIDFMKRVINSLRKKLKDNSEALKTSHAIL 338 Query: 367 LN-----DLSEKTGSHDIVRLHRLILQMNRAL--------GMFEAQSKLWRLASLAQSSG 413 N + +K G+ DI L + ++N L F S + + Sbjct: 339 HNTKGFTEEIQKEGNLDIDSLKQCGERLNLLLNTLQIAETDKFRPLSSVAQFVMYLVQYQ 398 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 EG L+ + S + ++ +I+TS T+ + + ++ + Sbjct: 399 EGFKVIFQSNNYEGTLNEKLMTLACFDSSLAMKNIFAQFQSVILTSGTMSPIEIYPKILD 458 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 + K+ D + +S + E ++ N E F + E+ Sbjct: 459 FKPVVAKSIDIELTRNSIQPIIVTMSEDGTELTSEFTLRNNEDVSRNYGNFLLELSENV- 517 Query: 534 HLGMLVLFASGRAMQRFLDYV---TDLRLMLLVQGD-QPRYRLVELHRKRVANGERSVLV 589 G++V S M+ + + +++ + D + ++ +RK G + L Sbjct: 518 PDGLIVFMPSYSRMEEWASIWNKFSKNKVLFIESKDVAETSQKLQQYRKCCDVGRGAALF 577 Query: 590 GL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSAS 647 + AEG+D +G V + +++ ++L+ + A Sbjct: 578 SIARGKIAEGIDFEGHYGRCVAVIGFPALNSKDTLILERCKFLEEKFKITKNDFIEFDAM 637 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKE 706 Q +GR++R +G +++ DKR K+ L +P + +Q + + E Sbjct: 638 RQTCQCLGRVLRGKQDYGIMIMADKRFAQKS----KLQKMPRWIYKQLDQSRCLNITSE 692 >UniRef50_B8BYI1 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8BYI1_THAPS Length = 746 Score = 322 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 122/773 (15%), Positives = 239/773 (30%), Gaps = 111/773 (14%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 LQ P F P Q Q + V L + H +E+PTG GKTL L +A + E+ Sbjct: 3 NLQVHFP-FRPYDVQTQYMKSVLNAL--QSSNHALLESPTGTGKTLCLLCSALAWQQGEK 59 Query: 77 ---------------------------------------KTLVVSTANVALQDQIYSKDL 97 ++ ++ + Q+ + Sbjct: 60 AKIRTSGVIATAPTVQPTGGDLSQNDGDGNAPALRTNKLPVIIYASRTHSQLSQVVRE-- 117 Query: 98 PLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTP-NNQEEQKRC 156 LK K R + L + + + E+ N+ ++R Sbjct: 118 --LKNTRYRPKHAVLGSREHMCVHPKVNPLVAKAKSSANAAPVSSSEVNHGCNKLNKERK 175 Query: 157 AKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQE 216 + +LD G + + ++D L Y+ CPF+ R I++ Sbjct: 176 CMFRNNLDEVLAGGEYEQPVLDMED-------------LVTVGKQYKVCPFYHTRSLIKD 222 Query: 217 AEVVVANHALVMAAMESEAVL--PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRL 274 AE++ + + E+ L D N +L+ DE H+L + A S ++++ Sbjct: 223 AELIFVPYNYLFDRDARESTLAEVDFANAVLIFDEAHNLEEFAS--ESSSFDLSSSDIAG 280 Query: 275 QLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN-ILNLYMPAGQEAE 333 + + + + P + + + L + I+ + E Sbjct: 281 CVGEVQRAIQYL--ELNPDMGDGSKMKDNMLRLKSLFLRFEQYLLDGIMQGNQKMTSQGE 338 Query: 334 HRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRAL 393 + E + + + E G++ +L Sbjct: 339 VSHPGEYIFHVFREGAGITHANQAIFISFVRQVGDLIMEFKGNNASSGTPKL-------- 390 Query: 394 GMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP 453 W L S A+S VTK + + L + + Sbjct: 391 ----DHFGEWILLSSAKSYRVHVTKIDGNGGGGFAGGRTISYWCFAPALAMRELSFLKVR 446 Query: 454 HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 I++TS TL L SFS + + D + D F + + + + Sbjct: 447 SILITSGTLSPLPSFSLELGLDFPVQLENDHVIQSDQIFVRVLGKGVSGKELSSKFGRRD 506 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD---------------YVTDLR 558 + ++I E+ + G+LV F S AM ++ +T Sbjct: 507 DPEYILELGNTLGS-LCRNIPGGVLVFFPSYSAMYNCIENHFMTTSETSTPWKRLLTRKA 565 Query: 559 LMLLVQGDQPRYRLVELHRKRVA--NGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIA 614 +++ + + ++ +A L G+ +EG+D D+ V + + Sbjct: 566 IVIEPRSTSDLSDAIAEFKRFIALPKSPGCFLFGICRGKVSEGIDFSDDMCRAVVVTGLP 625 Query: 615 FPPIDSPVVITEGEWLKSLNRY----------PFEVQSLPSASFNLIQQVGRLIRSHGCW 664 F P P V + E+L + A + Q +GR+IR + Sbjct: 626 FAPYLDPKVKLKREFLDAARASEKARPVPSTLSGAEWYNQQAHRAVNQAIGRVIRHRNDY 685 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPI--EQPEVPEGIVKKKEKTKSPRRRR 715 G V++ D R ++ L + + G+V+ +++K R Sbjct: 686 GAVLLLDHRFAQQSNRDGLSKWIRPYLRDETVGTATRGLVQFYKESKQKAGER 738 >UniRef50_A4RVJ2 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RVJ2_OSTLU Length = 938 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 109/754 (14%), Positives = 230/754 (30%), Gaps = 101/754 (13%) Query: 6 ALKAQIAAWYKALQEQIP-DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 + + + P P Q ++ + + L E H IE+PTG GKTL+ Sbjct: 118 DRREFTTKAIGGCKVKFPEGLNPHPAQTMTMSSIIRALTKRE--HAMIESPTGTGKTLAL 175 Query: 65 LIPGIAIAREE-------------------------QKTLVVSTANVALQDQIYSKDLPL 99 L +A E + + + + + +QI + Sbjct: 176 LCGALAWQEREVALSMEKNKGYWSEKMKYQTARNAYKDAIFICSRTHSQINQILRE---- 231 Query: 100 LKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKL 159 LK+ +++ R R +CP + ++ L + + R + Sbjct: 232 LKRTGYSPRYSVLSSRQR-MCP----MEKNDAQCKELLGTGVAQQSGRTACGFFNRHKHV 286 Query: 160 KGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEV 219 +++ Y G A D + + R+ + C F+ R ++ A++ Sbjct: 287 SSNMERYPKAGEEGMFPSAWDMEDFERVVNEIEG-----------CSFYALREMVKTADL 335 Query: 220 VVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLF 279 + + + + D K+ +++DEGH+L DV R+ S E + +D Sbjct: 336 IFCPYNYLFDVNIRRKMKIDLKDAAVIIDEGHNLEDVCRE--GSSIEFSLDTIGKGMDEL 393 Query: 280 TKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMG 339 +K + + + I++ L A + Sbjct: 394 SKTWGKINNE---------------TSLIARFFRAISAFMEGLFCTNTAPTTVIQSNQLE 438 Query: 340 ELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQ 399 +++L+ + + T+ + + E L + S + A Sbjct: 439 YFVNDMLKTFNAVGEYTQDIIDVVEKLLTEDSNLMSPIIAPHIT-------------FAG 485 Query: 400 SKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTS 459 L + + + A +R E +G ++ S + +I+TS Sbjct: 486 DLAEVLQNAVKHAAAYNIFIGSRVEIDGDECPGMVIQCMKPSVAF-HAVAEKARSVIITS 544 Query: 460 ATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIA 519 TL +N+F + V D + + + + Sbjct: 545 GTLSPMNTFEAELAEKFPTKIEAPHVVPNDHVYVEVTSAIGEVTYKATD-GHVQGPKFAK 603 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLM----------LLVQGDQPR 569 ++ + K + GMLV + R L L + +G + Sbjct: 604 KLGEYLLKYAQVI-PGGMLVFLPKYSLIDRVLREWHVTGLFGKMNDYKRVVVETRGARGF 662 Query: 570 YRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 + NG+ S+++ + +EG+D K D V I FP + V + Sbjct: 663 QDTLNEFNLGNTNGKGSLMLAVYRGKVSEGIDFKDDSARAVFCVGIPFPSVYDIKVKAKK 722 Query: 628 EWLK-----SLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR 682 E+ + A Q +GR IR + + + D R + Sbjct: 723 EFNDLPVSRAQGMLSGGEWYRAQAYRAYNQALGRCIRHPKDYAALFLVDSRFRESRW--- 779 Query: 683 LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 +L+ + + + + + + +R R Sbjct: 780 MLNNISKWIRNNAQASDDVNQSVRVVDGFFKRLR 813 >UniRef50_B9SQD1 Regulator of telomere elongation helicase 1 rtel1, putative n=1 Tax=Ricinus communis RepID=B9SQD1_RICCO Length = 1049 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 105/762 (13%), Positives = 225/762 (29%), Gaps = 115/762 (15%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + + P + Q + V ++L + +E+PTG GKTL L +A + Sbjct: 7 RGIDVDFP-YEAYDCQLVYMEKVIQSLQSR--CNALLESPTGTGKTLCLLCATLAWRKSL 63 Query: 76 Q-------------------------------KTLVVSTANVALQDQIYSKDLPLLKKII 104 T+V ++ + Q+ + LK+ Sbjct: 64 GPFTTGKIERNGRTAGSKSDDTPPSPSEGTALPTIVYTSRTHSQLRQVVQE----LKRSS 119 Query: 105 PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD 164 K R + +C + +L + + E+++C D Sbjct: 120 YRPKMVILGSREQ-LCIHDEVSLLRGKAQTNAC-------HYVCKRREKRQCTHFARVSD 171 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + + + I+D L + + CP++V+R + +++ A + Sbjct: 172 YVRKNPHLGDEPVDIED-------------LVKMGRRFGPCPYYVSRELHKVVDILFAPY 218 Query: 225 ALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 ++ +++ D +L+ DE H+L + DA + A Sbjct: 219 NYLIDRSYRKSLKIDWDKSILIFDEAHNLESLCADAASFDLSSGLLTACIS-------EA 271 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 + R + L ++ L + ++ G E Sbjct: 272 KSCIELSVARREDSNDKSRNPDNFAILKAILLKLEKRIAEVPIESKDLGFT-RPGPYIYE 330 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 +L + L + E L E + + RL + +F +S Sbjct: 331 LLADLHITHETATKLTDIIEEAALLLEEDKQNTAKGTVCRLESMGDIFKIIFREKSNAHA 390 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 + + + + W+ +E + II+TS TL Sbjct: 391 NFYRVHVQEVEASASDSLRGKASRTLSWWCF---NPGVAMEEFSRMGVCSIILTSGTLSP 447 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV-------EPSIDNEEQH 517 ++SF + L + S +Q + + + ++ Sbjct: 448 MDSF---AQELKLDFPIRLENPHVIS----SKQIWAGVVPVGPSGRSFNSSYRNRDSLEY 500 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQR---------------FLDYVTDLRLMLL 562 E+ G+LV F S + + + + + ++ Sbjct: 501 KQELGNAIVNFA-RIVPDGLLVFFPSYYLLDQCIGCWKNVTHASSTTIWERICKHKQPVV 559 Query: 563 VQGDQPRYRL-VELHRKRVA--NGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPP 617 + L +E + ++ + +V + +EGLD V I + FP Sbjct: 560 EPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHTGRAVMIIGMPFPS 619 Query: 618 IDSPVVITEGEWLKSL---NRYPF-------EVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 + P V + E+L R + E AS + Q VGR+IR +G + Sbjct: 620 RNDPKVRLKREFLDEQLCLQRDAYKSQLLTGESWYTQQASRAVNQAVGRVIRHRHDYGAI 679 Query: 668 VIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTK 709 + D+R N ++ + + + + + Sbjct: 680 IFCDERFAHSNSQSQISLWIQPHIKCHSKFGDVVFTLSRFFR 721 >UniRef50_B9GEL6 Predicted protein (Fragment) n=2 Tax=rosids RepID=B9GEL6_POPTR Length = 749 Score = 321 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 102/765 (13%), Positives = 222/765 (29%), Gaps = 122/765 (15%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR-- 73 + + P F Q + V ++L + + +E+PTG GKTL L +A + Sbjct: 8 RGIDVDFP-FEAYDCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLCLLCATLAWRKSL 64 Query: 74 -----------------------------EEQKTLVVSTANVALQDQIYSKDLPLLKKII 104 T+V ++ + Q+ + LK+ Sbjct: 65 GGFSTGKIERNGRIAGGKLDIVPSSQSEDRNLPTIVYASRTHSQLRQVIQE----LKRSS 120 Query: 105 PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD 164 K R + +C +L + K +G Sbjct: 121 YRPKMVILGSREQ-LCIHEEVSLLRGKVQNNAC----------------HLICKTRGKRQ 163 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + + D+ + + + R + CP++++R + +++ A + Sbjct: 164 CTHYSRVADYVKCNPHLGD-EPVDIEDLVNIGRT---FGPCPYYISRELHKVVDILFAPY 219 Query: 225 ALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVA 284 ++ +++ D N +L+ DE H+L + DA W K Sbjct: 220 NYLIDRGNRKSLAIDWDNSILIFDEAHNLESLCADAASFDL---PSWLLTACISEAKSCI 276 Query: 285 TCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDE 344 R ++ P+ L L+ L + +E + + Sbjct: 277 DLSVTRREESNDKSWNPDNFAI----LRALLLKLEKRIAEVPIESKELGFTKPGPYIYEL 332 Query: 345 VLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWR 404 + ++ T+++ + + + L E+ + ++ L + + K Sbjct: 333 LADLNVTHDTATKIIDIIKDAAV--LLEEDKQDKSKGTGCRLESISDFLQII-FREKNNS 389 Query: 405 LASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRS 464 A+ + A +G+ ++ + II+TS TL Sbjct: 390 HANFYREGEANAADVL-----KGKPSRTLSWWCFNPGIAMQEFSRMGVRSIILTSGTLSP 444 Query: 465 LNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV-------EPSIDNEEQH 517 L+SF + L + S Q + + ++ Sbjct: 445 LDSF---AQELKLDFPIRLENPHVIS----SNQIWAGVVPAGPSGRSLNSSYRTRDSLEY 497 Query: 518 IAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT---------------DLRLMLL 562 E+ G+LV F S + + + + ++ Sbjct: 498 KQELGNAIVNFA-RIVPDGLLVFFPSYYLLDQCISCWKNMSQANSTTIWERICKHKKPVV 556 Query: 563 VQGDQPRYRL-VELHRKRVA--NGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPP 617 + L +E + ++ + +V + +EGLD V I + F Sbjct: 557 EPRQSSLFPLAIEDYLAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFAM 616 Query: 618 IDSPVVITEGEWLKSLNRY-------------PFEVQSLPSASFNLIQQVGRLIRSHGCW 664 P V + E+L E AS + Q VGR+IR + Sbjct: 617 RTDPKVRLKREYLDGQTHSQRDGCKMLKLQVLSGEEWYGQQASRAVNQAVGRVIRHRYDY 676 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTK 709 G ++ D+R +N ++ + + + + + Sbjct: 677 GAIIFCDERFEHRNRQTQISLWIQPHIKCHSKFGDVVFTLSRFFR 721 >UniRef50_C4V9F4 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9F4_NOSCE Length = 695 Score = 321 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 106/756 (14%), Positives = 217/756 (28%), Gaps = 124/756 (16%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE- 74 K + P + P Q+Q + + + EG IE+PTG GK+LS L +A Sbjct: 7 KGISVDFP-YEPYESQKQTMEKILTCMM--EGSTGMIESPTGTGKSLSILCAVLAYKEHI 63 Query: 75 -----------------------------------------EQKTLVVSTANVALQDQIY 93 + + + DQ+ Sbjct: 64 KRNNIPLHKPPKKPLLDAVDESKQSDINELLNATQEKAENDNDFKIFICSRTHKQLDQLV 123 Query: 94 SKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQ 153 L K + + R +Y L + + + Sbjct: 124 Q----QLNKTRYKPRISILASRNQYCIHPKLQNVTDKASACSEYIKKNQCNYVNGKDRLA 179 Query: 154 KRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARRE 213 KR + D++ +G R C CP+F AR+ Sbjct: 180 KRVGQNIFDIEEIVREGKR---------------------CGG--------CPYFAARKL 210 Query: 214 IQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYR 273 +A+++ A + ++ + N ++++DE H++ DV R S E+T+ Sbjct: 211 ADDADIIFAPYNYLLDRNVRGNTAIELSNSIIIIDEAHNIDDVCRS--SGSIELTSNIID 268 Query: 274 LQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE 333 + ++ V K + + EL+ + + + + + Sbjct: 269 IIVNELLNAVKKSAYLGETKGDYLILL---------ELFRKLVFNVEKVTSFDKTNKNVK 319 Query: 334 HRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRAL 393 R G+ L + + + + + +V + Sbjct: 320 LRIRKGKNIKNELIEMTITCEFMTQFKN----AIYGIEQVQDGKSLVSVSTW-------- 367 Query: 394 GMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP 453 + E + + + +G+ ++ + + + + + Sbjct: 368 HIIETLDSILSPLLFSDCDVYSYAFNKCENDFQGRTFFSYNFWLMDGAYVFSPFV-KQVK 426 Query: 454 HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRV------ 507 +I+ S TL F G K L + +Q + + Sbjct: 427 ALILLSGTLTP---FVSFSSELGHKFAHQISAPHLIN----DKQVLVTCLKRGHLKQELI 479 Query: 508 -EPSIDNEEQHIAEMAAFFRKQV-ESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLL--- 562 I ++ ++A + H G LV S + + LRL L Sbjct: 480 GTYKIAESLAYLDQIARVVYDTAYKVHGHGGTLVFVPSYTFLDNLHARIKLLRLDNLFCE 539 Query: 563 --VQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPI 618 G +++ + R+ + VL+ + +EG+D K V I +P + Sbjct: 540 PKAGGINEFESILKKYHNRINEKKPVVLLCVYRGKASEGIDFKDSSARAVICVGIPYPSL 599 Query: 619 DSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 P + + E+ + A + Q VGR IR WG +++ D R K Sbjct: 600 VDPQIELKKEFNDKHKHFNGRRWYETQALRAVNQAVGRAIRHKDDWGIIIMLDSRYSDKR 659 Query: 679 YGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRR 714 +L + F + I ++ Sbjct: 660 VSVQLSGWVSQFLKVHNDYESCIKSINLFLSDKSKQ 695 >UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei RepID=Q57ZK3_9TRYP Length = 963 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 122/758 (16%), Positives = 239/758 (31%), Gaps = 90/758 (11%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 ++ P F P Q + + V L G + +E+PTG GKTL L +A E Sbjct: 7 DGVEVSFP-FAPYPVQEEYMRSVIYALKGSH--NALLESPTGTGKTLCLLCGVLAWLDER 63 Query: 76 QK---TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEP 132 + +S L+ S+ L ++I + K R RY ++ L Sbjct: 64 RICFLNSGISDRTSLLRVVYCSRTHAQLSQVIREFK------RTRYSSIFSMAVL----- 112 Query: 133 TQQDLLAFLDDEL-TPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK 191 +D + L P++ ++K C++L+ D + + G D L Sbjct: 113 GSRDHMCLNSQVLQLPSSHAQRKLCSQLREDRNCRFYRGYEARAAGRKD--FPDELWIHD 170 Query: 192 ASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGH 251 L CP++ R ++A+VV + V + + + +L++DE H Sbjct: 171 MEDLVSEGRKCGFCPYYYERDAAKDADVVFLPYNYVFDVSFRKQLPFELSGSVLIVDEAH 230 Query: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 +LP V A + + ++ +A + + L Sbjct: 231 NLPSVLGSA--SCMNLQPLDLANAICECSRAMAMQRILSKDEDNNDDTSAVTSEQEFASL 288 Query: 312 YEL---IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLN 368 + + + +P+ +EAE + + C+ + + M+ L + + Sbjct: 289 KVILCGLEACIVNEPRELPSKEEAETHAGRLDTSGSL-TGCEIVRSGSYMISFLRKAAIT 347 Query: 369 DLSEKTGSHDIVRLHRLILQMNRALGMFEA--------QSKLWRLASLAQSSGAPVTKWA 420 + ++ +I + L E+ Q L + + + Sbjct: 348 HDIFFGDGGEGGFINEVISKALTVLSQSESTGVGLSKVQQFLSFVFERCGEGDDDSSYFI 407 Query: 421 TREEREGQLHL---WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGL 477 + + H + +S ++ L+ + +++TS TL L S G+ Sbjct: 408 LTDGKNTNGHANPRTLSYWCLDISRVVQSLVCD-LHSLLLTSGTLSPL---SHFAMELGV 463 Query: 478 KEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAF------FRKQVES 531 + + S +Q + N + + Sbjct: 464 SFEVCLK----GSHVIEEKQVIGSVLCRGPGGERLNGGYAFRNGVDYRIGLGMALVNISR 519 Query: 532 KKHLGMLVLFASGRAMQRFLDYVT---------DLRLMLLVQGD---------QPRYRLV 573 G+LV F S A+ +D + +L Q +V Sbjct: 520 ITPGGILVFFPSYVALNAAVDLWRTGGGRANETETVWAMLEQVKPVFVEPAAAADAQTIV 579 Query: 574 ELHRKRVANG--ERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEW 629 ++ V + L+ + +EG+D V I I F V + E+ Sbjct: 580 TSFQREVDANSTRGAFLLAVCRGRISEGIDFADQHGRCVVIAGIPFANHTDLFVRLKREY 639 Query: 630 LKS-------LNRYPF--EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYG 680 + + PF + A ++ Q VGR+IR +G VV+ D+R + + Sbjct: 640 ITRVSTKRPAVGGKPFTGNEWYMNEAMRSVNQCVGRVIRHKDDYGAVVLADERFVDR--- 696 Query: 681 KRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRR--RRR 716 L L + + V RRR Sbjct: 697 ---LHGLSEWVGSRCTVHSEFRGTYACIAKFFAPYRRR 731 >UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=A8MJA6_ALKOO Length = 800 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 124/682 (18%), Positives = 217/682 (31%), Gaps = 113/682 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 Q P R QR++ V +T+ +E + L +APTG+GKT+S L P + E + V Sbjct: 195 QFPFSNYRKGQRELAVAVYRTI--KEEKKLFAQAPTGIGKTISTLFPTVKAIGEGITSKV 252 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + Q+ + +K + K + + +C Sbjct: 253 FYLTAKTITRQVAEEAFSRMKSMGLRFKTVTLTAKDK-ICFEK----------------- 294 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 Q + C+ KG D K GL D L++ + + Sbjct: 295 -------GKQCNPEECSFAKGHFDRVK-SGLAD---------LFQNEDSFTREIIEFYAQ 337 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP--DPKNLLLVLDEGHHLPDVAR 258 ++ CPF + A+ V+ ++ V + + ++DE H+L D +R Sbjct: 338 RHQICPFEFSLDIAIWADGVICDYNYVFDPRVYLKRFFADEKGDYTFLIDEAHNLVDRSR 397 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 K+ + ++ ++LNA E + Sbjct: 398 GMFSAEIN-------------KKIFLEQKRVMKHQSQKVYKTLDKLNAFMIEARKKCGEH 444 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 + + E + L +R ELF Sbjct: 445 SFYIQK---------------------EENTEIYHLLASFVRETDELFKEGY-------- 475 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 QM+ + E + +A+ + + Q ++F + Sbjct: 476 ---------QMDENKDLLELYFNAFAFLKIAEFYDERYRTYIEKR----QGDVFFKIFCL 522 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L + + I SATL L F + L D + L SPF G Sbjct: 523 DPSYLLGEAI-KRGRTAIFFSATLTPLPYFKEI-----LGGAEEDYAIRLGSPFESENLG 576 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL- 557 +V + N ++ +A K E K V F S + M+R LD + Sbjct: 577 LMVA--DYISTKYRNRDRSYIHIADVIAKVSEGKT-GNYFVFFPSYQYMRRVLDVFVEEY 633 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGER--SVLVGL--QSFAEGLDLKGDLLSQVHIHK 612 + +L Q E + + S+ G+ F+EG+DL G+ L V I Sbjct: 634 PHINVLQQQQTMTEEEREEFLNKFEDQPERTSIAFGVLGGIFSEGVDLVGERLIGVIIIG 693 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + P + S V E+ N +E + ++Q GR+IR+ G V + D Sbjct: 694 VGLPQL-SLEVNLIMEYFNQKNNKGYEYAYMFPGMNKVLQGAGRVIRTETDRGIVCLVDD 752 Query: 673 RLLTKNYGKRLLDALPVFPIEQ 694 R + Y P + + Sbjct: 753 RFTSYGYQALFP---PEWKHFR 771 >UniRef50_UPI000180BD56 PREDICTED: similar to predicted protein n=1 Tax=Ciona intestinalis RepID=UPI000180BD56 Length = 1008 Score = 319 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 113/758 (14%), Positives = 241/758 (31%), Gaps = 76/758 (10%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 ++ + P F Q+ + V + L + + A+E+PTG GKTL L +A R+ Sbjct: 8 GIKVEFP-FTAYEVQKSYMTKVIQALNTHQ--NAALESPTGTGKTLCLLCSTLAWRRQHL 64 Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 L T V+ Q+ +S IP K A R + + L T+ + Sbjct: 65 NELKKHTNPVS-QEDAWSSSEKSKDSAIPAPKIIYA-SRTHSQISQVVKELKRTDYGKDI 122 Query: 137 LLAFLDDELTPNNQEEQKR-------CAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 ++ L E + +G ++ + + D ++ ++ Sbjct: 123 TISILGSREQMCIHPEVSKQTSNQAMVHMCRGKINKHTCQFYNNVEDAKKNNIFTTKV-- 180 Query: 190 DKASCLNRNCYYYRECPFFVARREIQEAE--VVVANHALVMAAMESEAVLPDPKNLLLVL 247 L CP++ R ++ E ++ + ++ + + +++ Sbjct: 181 MDIEELVTVGKSRTVCPYYSEREVSKQNECGIIFTPYNYLLDRKSRATNNLEIRGNIVIF 240 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI-------PPLAI 300 DE H+L + + S ++T+ ++ ++ + T+ L++ Sbjct: 241 DEAHNLEKLCEE--STSFDLTSLEVAKCIEEVGDVLDAATKFEESGTVADGHENGESLSL 298 Query: 301 PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR 360 E + + + +L +L+ + ++ + R G+ E L +++ Sbjct: 299 SEFKSQDLAIMKSVFIALEKLLDQ-VELNKDTKSRSEPGKFMFEFLSKINLTESTYQIML 357 Query: 361 GLAELFLNDLSEKTGSHDI--VRLHRLILQMNRALGMFEAQSK---------------LW 403 + + LS + S I L + + A E ++K Sbjct: 358 DVVDKISTYLSTLSNSLRIRGAALQKFSEIVKVAFSWMEDETKGHMTRAQRMQELCMCYR 417 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 +G W + + L+ + ++I+TS TL Sbjct: 418 VHICENAETGKSTDVWKRSANTSSKPGRTISFWCFSPGYAMTNLVKCGVRNLILTSGTLS 477 Query: 464 SLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMR-------VEPSIDNEEQ 516 L SF+ ++ D + Q ++ + Sbjct: 478 PLESFTSELQIDFPITLENDHVID-------KHQVFVITLTHGKKGGLLNSTFKTRKDVN 530 Query: 517 HIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD-----------LRLMLLVQG 565 + E+ + + G LV F S AM +L + + + Sbjct: 531 QVQELGLTVADMIAAA-PGGALVFFPSYSAMAEYLTIWKENSNVMTLVEKVKPCTVEPKN 589 Query: 566 DQPRYRLVELHRKRVANGERSVL-VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI 624 ++ + V G + L V +EGLD D V I I +PP P + Sbjct: 590 KHELRTAIDKYYTDVNTGGGTFLAVCRGKVSEGLDFSDDNGRTVIIVGIPYPPAFDPRIK 649 Query: 625 TEGEWLKSLNRYP------FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKN 678 + +L L A + Q +GR+IR +G +V+ D R ++ Sbjct: 650 MKMAFLDDLRTKGATSLLTGREWYRQQACRAVNQAIGRVIRHRYDYGAIVLCDHRYAGRD 709 Query: 679 YGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 L + ++ + I + + S + + Sbjct: 710 QLSELPKWVQPHVVKFNNAAKCIRRLRSFFCSVNEKEK 747 >UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9XAU8_9BACT Length = 824 Score = 319 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 123/701 (17%), Positives = 224/701 (31%), Gaps = 81/701 (11%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R QR++ K +A G L IEAPTG+GKT+S + P I E + + Sbjct: 193 AFPFSNYRTGQREIAVAAYKIMAR--GGRLFIEAPTGIGKTISVIFPAIKAMAERKLERI 250 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + + K L+ L+ R + +C R Sbjct: 251 FYLTARTIGRAVAEKAFADLRGKGLQLRVVTLTAREK-LCIR------------------ 291 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 E C +G D YK I+ + + Sbjct: 292 ------DGKACELSTCPLAQGYYDRYKPAMREALGRQEINRRVLEEV-----------AQ 334 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAME--SEAVLPDPKNLLLVLDEGHHLPDVAR 258 ++ CPF ++ + ++ ++ V + + ++DE H+L D AR Sbjct: 335 RHQVCPFELSLDISSWVDGIICDYNYVFDPKVYLRRHFADEAGDFAFLVDEAHNLVDRAR 394 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 + SA+I + V C + + + ++ A E + + Sbjct: 395 EMF--SADINTRELVEVKQAIKREVPGCAKAITRLNVGIKKLIGKVGAEAESSADFPDEM 452 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 AG + + + + + E L L + L Sbjct: 453 -----DLFSAGAVTKTKNIPSATTRTLPQARGDMGIFKEFPSSLTMLVEDVLE------- 500 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 + + A + +RL S +++ ++ T E + + C + Sbjct: 501 --TAETWLTRNEAAEFRDDLLQLYFRLLSFRRTAELYDERYVTLVEAAESVRVRLFC--L 556 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L++ L + SATL +N +E+ G D + L+SPF+ Sbjct: 557 DPSFLLQQAL-SRGKAAVFFSATLTPIN---YYRELLG--GNQEDPVLQLNSPFDSEHLA 610 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR 558 +V R+R + Q ++E+ V+ + LV F S + L+ L Sbjct: 611 LLVHGRIRTDFKARR--QTLSEVVHAIATLVQERS-GNYLVYFPSFLYLNAVLELFQSLY 667 Query: 559 --LMLLVQGDQPRYRLVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLSQVHIHK 612 + +L Q E + LVG F EG+DL GD L I Sbjct: 668 PTVPVLTQRPGMAESERETFLAAFSVEHGQTLVGFAVLGGIFGEGIDLVGDRLIGAVIIG 727 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + P + + + ++ + F+ ++Q GR+IRS G V++ D Sbjct: 728 VGLPQLCAERDLIR-DYFQEKTGAGFDYAYTFPGMNRVLQATGRVIRSETDRGIVLLIDS 786 Query: 673 RLLTKNYGKRLLDALPVFPIEQP----EVPEGIVKKKEKTK 709 R Y K + +Q ++ E + Sbjct: 787 RFDEWRYRKLFPKW---WHRKQIGNEHQLREAVQDFWRSVS 824 >UniRef50_Q4FXD6 Helicase, putative n=5 Tax=Trypanosomatidae RepID=Q4FXD6_LEIMA Length = 953 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 114/762 (14%), Positives = 236/762 (30%), Gaps = 109/762 (14%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR--- 73 + P F P Q + + V K L G + +E+PTG GKTL L + Sbjct: 9 GITVSFP-FDPYPAQVEFMRSVVKCLQN--GFNGLLESPTGTGKTLCLLCSTLGWLSATS 65 Query: 74 -----------------EEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFT-AAFGR 115 + +V + A Q+ + LK+ +FT A G Sbjct: 66 QGAVLRHASDQDQKGRGKHNHKVVYCSRTHAQLTQVVRE----LKRTSYAQRFTMAVLGS 121 Query: 116 GRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHT 175 ++C + P++Q + C+ L+ + + + GL+ Sbjct: 122 REHMCLNK------------------EVTRLPSSQAQHAMCSALRLERNCRFFSGLQS-- 161 Query: 176 DIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEA 235 A L + L R CP+F R ++A+VV+ + V+ + Sbjct: 162 AAAGASLLPPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNYVLDPSLHKQ 221 Query: 236 VLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTI 295 + + N +L++DE H+LP V ++ + ++ +A + + Sbjct: 222 LPFELANCILIVDEAHNLPSVLSS--SGCQTLSPLEVTTAIHDCSRAIAMHRITTKKAEL 279 Query: 296 PPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKL 355 E L L+ L + A A ++ V + A L Sbjct: 280 DEDMAAEE-ELELASLKILLRRLEMCVYAEPMAEGTATPTPTQCDV---VRDGSYMFAFL 335 Query: 356 TEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNR----ALGMFEAQSKLWRLASLAQS 411 + L + + S + + + + A M Q L R+ + + Sbjct: 336 EKALITREVFGVQSDGVTSASGLAGTMGKCVTLLADSERPATSMARVQEFLTRVFAFDMA 395 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 + + + + + +++ + +++TS TL L+ F Sbjct: 396 HLDSTRFVLQQHLVAAKAARTLGFWELDNTRLMRQVV-SPLHSVLLTSGTLSPLDQF--- 451 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF------ 525 G++ + + + +Q + N + Sbjct: 452 AAELGMEFQVRLKGKHVI----QADQVLGGVLCRGPSGEKLNGGFSFRSSVDYRVGLGMS 507 Query: 526 RKQVESKKHLGMLVLFASGRAMQRFLDYVTD------------------LRLMLLVQGDQ 567 + G LV F S +M ++ + + Sbjct: 508 LANIARNTPGGTLVFFPSYASMNSVVELWRAGSGRAGDTKTVWGMLSELKPIFVEPNNSN 567 Query: 568 PRYRLVELHRKRVANGE--RSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 +V+ +K V ++L+ + +EG+D + V + I + V Sbjct: 568 DLPTIVQGFQKEVDTSPLRGAILLAVCRGKISEGIDFADNHGRCVLVAGIPYANHTDLFV 627 Query: 624 ITEGEWLKS-------LNRYPF--EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRL 674 + +++ S ++ PF + A + Q VGR+IR +G V++ D+R Sbjct: 628 RLKRDYITSVAPQRPLVHGKPFTGDDWYRNEAMRAVNQCVGRVIRHKDDYGVVLLADERF 687 Query: 675 LTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 + LL+++ + + V RR Sbjct: 688 ------EGLLESVSEWVRRRTRVFSDFRGAYAAVAQFFGARR 723 >UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGW8_9BACT Length = 591 Score = 316 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 134/690 (19%), Positives = 241/690 (34%), Gaps = 124/690 (17%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIP 67 + + +L + +P + R Q + ++ + + +EAPTG GKT +YLIP Sbjct: 1 MDKYFSKVGSLSDILPRYRQRDAQLDAANFIFDSM--KTYQPAVVEAPTGSGKTFAYLIP 58 Query: 68 GIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFT-AAFGRGRYVCPRNLTA 126 A E + ++ST L QI KD+ + +I D +F GR Y C Sbjct: 59 ----AFELGRRTIISTKTKQLMSQIAGKDIEAVNRIFGDDRFVAVLKGRRNYFCHLRFFR 114 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 NQ +R + G + + + D Sbjct: 115 F------------------VYPNQGRFERVVEWYGSVVDQE---IIDVPIGVFSPHEIEH 153 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAME----SEAVLPDPKN 242 +STD C C +Y C F+ A+ + A++V+ NH L+M+ +E Sbjct: 154 ISTDSWQCTASKCEFYDICSFYRAKEQANSADIVITNHYLLMSDFALKSENEHASIFDFA 213 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 +++DE H +PD+ + + KL+ + F P+ I Sbjct: 214 DHIIMDEAHSIPDIFPRFAGTELSLRSFL---------KLMNENRQAFDPREIEL----- 259 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 +L+ + + + L Sbjct: 260 ---------------AAGMLSGLLETIKTRTYTN-----------------DFRGALLPY 287 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 E + EK RL+ + LG + ++ Sbjct: 288 IEFVNKAIGEKDFEEMKNVHKRLVEKAVSVLG------------------DSEGVRFVE- 328 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 + + + + + +D+L + + + SATL +FS +G +E+ Sbjct: 329 ---QERGDILLQYIPLNAADKLREGMKNACLSPVFVSATLSGKGNFSYFLSETGYEEEEI 385 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 + ++L+ F+ +QG++++ D +E E+A K +L++ Sbjct: 386 GK-MSLEPVFDMAQQGRLLV--------QDCDEAFYEELA--------LKAKGSVLIICN 428 Query: 543 SGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKG 602 S M + + + L G R ++ K + ++ VG F EG+D Sbjct: 429 SVGRMLKLTKMLKE-----LCPGRVYSQRDID--IKDTEGLKDTIFVGCAVFREGMDFAH 481 Query: 603 DLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHG 662 +S V + K+ F D V+ + E ++ + PF LP A Q VGRL+R Sbjct: 482 TGISYVVLDKLPFEYPDDLVLKEQAESVRKKGQEPFMDYFLPRAVIYYRQAVGRLLRHED 541 Query: 663 CWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 G V+ D+R+ TKNYGK L P Sbjct: 542 DKGVWVVLDRRIDTKNYGKYFATVLKDVPR 571 >UniRef50_D1ISD7 Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1ISD7_VITVI Length = 777 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 114/791 (14%), Positives = 232/791 (29%), Gaps = 135/791 (17%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAI---- 71 + + P F Q + V ++L +E + +E+PTG GKTL L +A Sbjct: 7 RGIDVDFP-FEAYDCQLVYMEKVIQSL--QERCNALLESPTGTGKTLCLLCATLAWRKNV 63 Query: 72 -----AREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTA 126 A+ T++ ++ + Q+ + LK+ K R + +C Sbjct: 64 PHSQSAKTNLPTIIYASRTHSQLRQVIQE----LKRTSYRPKMVVLGSREQ-LCIH---- 114 Query: 127 LASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRR 186 + ++ L N R KG Y + + D Sbjct: 115 ---------EEVSLLRGRAQTNACHSLCRKRTKKGYCGHYSRVSDFMKYNPGLGD---DP 162 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 + + + R+ CP++V+R + +++ A + ++ +++ N +L+ Sbjct: 163 IDIEDLVNIGRSN---GPCPYYVSRELHKVVDILFAPYNYLIDRGNRKSLSVCWNNSILI 219 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKT------------ 294 DE H+L + DA + ++ + Sbjct: 220 FDEAHNLEGLCADAASFDLPSWLLTACISEAKNCVDLSISRREIEKANDKSCNPDNFAIL 279 Query: 295 --IPPLAIPERLNAHCEE----------------LYELIASLN--NILNLYMPAGQEAEH 334 A+ +L E +YEL+A LN + + E Sbjct: 280 RGNHSAALLLKLEKQIAEVPIESKELGFTRPGPYIYELLADLNITHKTATMLIDIIEEAA 339 Query: 335 RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALG 394 + + + +L M L +F + + + R+H ++ N A Sbjct: 340 LLLEEDAKGVAQKTKSTICRLETMSDILKIIFRDGGNAHAKFY---RVHVQEVEANAADA 396 Query: 395 MFEAQSKLWRLASLAQSSGAPVTKWA------------------TREEREGQLHLWFHCV 436 + EA +R ++ + S V G+ Sbjct: 397 LKEAAGTKFRTGAIREGSCGKVAVAVAQMVFKVDIRLRSAHKKTKANPNIGKASRTLSWW 456 Query: 437 GIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCE 496 ++ + II+TS TL L SF + L+ + S Sbjct: 457 CFNPGIAMQEFAVLGVSSIILTSGTLSPLESF---AQELKLEFPVRLENPHVIS----SN 509 Query: 497 QGKIVIPRMRVE-------PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 Q + + ++ E+ G+LV F S +++ Sbjct: 510 QIWAGVVPAGPSGCSFNSSYRTRDSLEYKQELGNAIVNFA-RIVPDGLLVFFPSYYILEQ 568 Query: 550 ------------------FLDYVTDLRLMLLVQGDQP-RYRLVELHRKRVANGE--RSVL 588 + + + ++ +E + ++ + +V Sbjct: 569 CVGCWKNKSHANSTNSSTIWERICKHKQPVIEPRQSSLFPSSIEDYMNKLKDSSMSGAVF 628 Query: 589 VGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY--------PF 638 + +EGLD V I I F P V + E+L Sbjct: 629 FAVCRGKVSEGLDFADHAGRAVVITGIPFAMRTDPKVRLKREFLDQRGLSQKEGCKVLTG 688 Query: 639 EVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVP 698 E AS + Q VGR+IR +G ++ D+R N ++ + + Sbjct: 689 EEWYTQQASRAVNQAVGRVIRHCHDFGAIIFCDERFAHPNRQSQISLWIQPHIKCYSKFG 748 Query: 699 EGIVKKKEKTK 709 + + + Sbjct: 749 DVVFTLTRFFR 759 >UniRef50_Q8SRT4 DNA REPAIR HELICASE OF THE RAD3/XPD SUBFAMILY n=3 Tax=Eukaryota RepID=Q8SRT4_ENCCU Length = 742 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 89/720 (12%), Positives = 220/720 (30%), Gaps = 67/720 (9%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + P Q + + +V ++L + H IE P+G GKT++ L I+ Sbjct: 6 DEVLVYFPYSSVYPEQLKYMREVKRSL--DNKGHCLIEMPSGTGKTVALLSMTISYQLHM 63 Query: 76 QKTLVVSTANVALQDQIYS--KDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPT 133 + + + ++ + +P ++K + +L Y+ T Sbjct: 64 K--------SKNVHFKVVYCSRTVPEVEKALKELDRVV-----EYIKKHRPIEFLGLGLT 110 Query: 134 QQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKAS 193 + L L N + C +L L K D + D ++ Sbjct: 111 GRKNLCINKAALKSFNVDV--ACRRLVNKLAESKCDFYENLADFREVP-----VAVYDFL 163 Query: 194 CLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLLVLDEGHH 252 L CP+++ RR I + ++ + ++ V + N +++ DE H+ Sbjct: 164 QLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRICAIVSSELGPNSVVIFDEAHN 223 Query: 253 LPDVARDALEMSAEITAPW-YRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 + + L + + L+ + I + E+L E Sbjct: 224 IDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRG-KPASGVDIQYEKVREKLVGPVPES 282 Query: 312 YELIASLNNILNLYMPAGQEAEHRF--AMGELPDEVLEICQRLAKLTEMLRGLAELF--L 367 + ++P F A+ + + + TE + L Sbjct: 283 IPYYYASGEGNYEFLPGNLRNSFHFVSALKRITEFFKTKLKTTHLTTESTESFCKSIREL 342 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 + + +K RL L + + +++ + + Sbjct: 343 SFVEKKALRFCSQRLGMLSQSLGLDDEDMGHLKTVADFSTMVSMYSKGFVVIFEPFDSQA 402 Query: 428 QLHL--WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRF 485 + S + ++ ++I+TS T+ ++ + ++ + Sbjct: 403 STVFNPTLRLACLDSSIAIS-PVFARFRNVIITSGTMSPIDMYPKILNFVPSRIAEIGAT 461 Query: 486 VALDSPFNH-----CEQGKIVIPRMRVEPS------------IDNEEQHIAEMAAFFRKQ 528 + +S +Q + +E + + + + Sbjct: 462 LDRNSISPLIITKGNDQMTLRALSDDMETTDACSGDVLTTSFSLRSDPSVVRNYGHLMVE 521 Query: 529 VESKKHLGMLVLFASGRAMQRFLDYVTD--------LRLMLLVQGDQPRYR--LVELHRK 578 + G++ F S M+ + + ++ V+ R + +++ Sbjct: 522 LSKVVPDGIVCFFPSYMYMEEIVSLWAETSIINEISKNKLVFVETPDGRETELALANYKR 581 Query: 579 RVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY 636 NG +L + +EG+D + V + + F +S + ++L+ Sbjct: 582 ACDNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTESVRLKKRLDFLREEYGI 641 Query: 637 PFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPE 696 A + Q +GR++R+ +G +++ D+R + + LP + + Sbjct: 642 KEYDFLTFDAMRHAAQCLGRVLRNKNDYGLMILADERFERNDKKSK----LPKWIRNCID 697 >UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73F47_BACC1 Length = 915 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 164/729 (22%), Positives = 273/729 (37%), Gaps = 102/729 (13%) Query: 1 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK 60 M A + I + L + I RA Q QM D+ + L R + IEAP G GK Sbjct: 1 MNSKADVILDIFE--EKLIKHYGTSIIRASQLQMALDIGEFLESS-KRVMIIEAPVGTGK 57 Query: 61 TLSYLIPGIAIAREE---QKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGR 117 +L L+P + + ++ ++ +TA + LQ Q+ ++PLL+K+ A G+ Sbjct: 58 SLGALVPVLVDRKYNTFDKRNVMYATATINLQGQLMRSEIPLLRKLGLVNNPIVAKGKSH 117 Query: 118 YVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDI 177 Y C + S++ + +L + D + K T + L + Sbjct: 118 YYCHFRMKN--SSQKIENELFSRTDQHVLEKFFRLSK----------TGQRSELEEEHGF 165 Query: 178 AIDDDLWRRLS-TDKASCLNRNCYYYRECPFFVARRE--IQEAEVVVANHALVMAAMESE 234 I+D W+R+ ++K++C R C + CP + RR E +VV+ NH ++ + + Sbjct: 166 NIEDKKWKRVELSNKSNC--RACQFSMVCPTIIHRRRFKAIENDVVITNHDQLINSFLNA 223 Query: 235 AVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKT 294 + +L D G + D A D LE + Sbjct: 224 MDMDSIYEPVLKTDMGLVIIDEAHDFLETFIGRLEKTF---------------------- 261 Query: 295 IPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAK 354 L+ L + E + L ++ +E + G Sbjct: 262 --TLSYLRNLEKYIERDNYKWKKAVDRLGAWVKRNKEYNKKSDAGRYL------------ 307 Query: 355 LTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGA 414 LT+ + + + L+E R ++ +++ L F + K Sbjct: 308 LTDFVFSILKTLQKILNE-NLFQAKYRRAEILDELSGILHRFLQKEK------------- 353 Query: 415 PVTKWATREEREGQLHLWFHCVGIRVSDQLERLL--WRSIPHIIVTSATLRSLNSFSRLQ 472 T W + E+ E FH + + ++L ++ II S TL FS ++ Sbjct: 354 -YTSWISLEDNE------FHVIENNYKEVFRQMLDYIKNSNKIIFMSGTLTVNKDFSYIK 406 Query: 473 EMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 +K L+SPF++ Q I IP+ P+ D ++ + + Sbjct: 407 NQWNIKSGEAV-TKVLNSPFDYKNQALIYIPKKLGNPNKDEFIENALKEIRKLLRL---- 461 Query: 533 KHLGMLVLFASGRAMQRFLD----YVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVL 588 L+L S M F + + + L QG+ VE KR E SVL Sbjct: 462 TGGRTLLLNTSKDHMDEFYNGIKVELATSNVPLYKQGESG----VENLTKRFKELEESVL 517 Query: 589 VGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF 648 VG SF G + G L+ V I+K+ FP + P++ +K F+ S P Sbjct: 518 VGSGSFFSGFSIAGTSLTSVIINKLPFPAFNDPIIELMSMGIKKE--DRFKKVSYPMMIN 575 Query: 649 NLIQQVGRLIRSHGCWGEVVIYDKR-LLTKNYGKRLLDALP----VFPIEQPEVPEGIVK 703 L Q VGRLIRS +G V I D+R ++ YGK + + L V EV +K Sbjct: 576 KLDQAVGRLIRSIEDYGIVTILDERIYTSQGYGKDVRELLKEQGYVLTRSWEEVESFYIK 635 Query: 704 KKEKTKSPR 712 K EK Sbjct: 636 KLEKGAEAE 644 >UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FSD6_9FIRM Length = 669 Score = 314 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 146/724 (20%), Positives = 257/724 (35%), Gaps = 90/724 (12%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 +A + I + + L + R Q+++ ++ + L +E + EA G GKT + Sbjct: 3 KSAEELLIYLFDEILPKH--GMNLRVKQKELSLEMLRAL--QENKLALCEAEVGTGKTHA 58 Query: 64 YLIPGIAIAREE--QKTLVVSTANVALQDQIYSKDLPLLKKIIPD-------LKFTAAFG 114 Y++ + V+ST+ +ALQ + + +P + I+ + L F G Sbjct: 59 YILALTVHNIYSDKKIPAVISTSTIALQKALTEEYIPQISGILLEHHVIDKPLSFVVRKG 118 Query: 115 RGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDH 174 + YVC L ++ Q + E+ + D D Sbjct: 119 KRHYVCDSRLKIYETSLKNLQREVDANLILELARLGEQ---------EFDRI------DL 163 Query: 175 TDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARR--EIQEAEVVVANHALVMAAME 232 D + + R++ + + ++C Y C F ++ + + NH ++A + Sbjct: 164 DDAVLTPYVKGRINVFRCN---KSCPYSLLCRFMNFKKKCMTDNFDFQITNHNYILADLI 220 Query: 233 SEAVL---PDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQ 289 + P +V DE H L D AR T ++ Sbjct: 221 GQKQGRKPLFPGYGAMVFDESHKLIDAARQMYS----------------------TVWDE 258 Query: 290 FRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEIC 349 + I L+ R +EL L + L L ++ Sbjct: 259 QDAEFIVGLSEVNRRTTGMDELTVLRSQLAEYNRQIFD------------RLAGDLAGNH 306 Query: 350 QRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLA 409 R E++ G E K + Q R G+ + +L ++ Sbjct: 307 TREGSRIEIVIGSMEKIYIRHMAKALEQLPLSYQENSGQKMRLQGLKKRCQELTDKLTIF 366 Query: 410 QSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 +SG W + E L V + + L R +W +I+TS T+ FS Sbjct: 367 LNSGNS-ICWMEKRENG---RLALCAVPMELEQVLFRDIWSRPIPVIITSGTMSVRGDFS 422 Query: 470 RLQEMSGLKEKAGDRFVAL--DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRK 527 + M+GL A R + SPF+ G + IP P+I + +++I + + Sbjct: 423 HFKRMTGLSFAALSRIMETSKPSPFDFQSNGLLYIPERMPFPNIRD-DRYIQAIMEEIVQ 481 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVTD--LRLMLLVQGDQPRYRLVELHRKRVANGER 585 V S H L+LF S M+R + + L + G R ++ R+ Sbjct: 482 IV-SATHGHTLILFTSYWLMERVFYGLKEQLSDYPLFLMGRG-RLDVISSFRR----SGN 535 Query: 586 SVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPS 645 VL S EG+DL GD+LS + + K+ FP PV+ + + Y +P Sbjct: 536 GVLFASDSAGEGIDLAGDILSSLIVVKLPFPVP-DPVMEYQRNQYDDFDLYR-RDIIIPE 593 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK-NYGKRLLDALPVFPIEQ--PEVPEGIV 702 L Q GR IR I D R + Y +L+ +P P+ +V + I+ Sbjct: 594 MLIKLRQWFGRGIRREKDTAVFSILDSRASLRGRYRAEILNTMPTMPVTDRLMDVADFII 653 Query: 703 KKKE 706 +KK Sbjct: 654 RKKA 657 >UniRef50_P06839 DNA repair helicase RAD3 n=85 Tax=Fungi/Metazoa group RepID=RAD3_YEAST Length = 778 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 116/728 (15%), Positives = 258/728 (35%), Gaps = 70/728 (9%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE- 74 L P Q + D+ KTL + G + +E P+G GKT+S L IA Sbjct: 6 DDLPVLFPYPKIYPEQYNYMCDIKKTL--DVGGNSILEMPSGTGKTVSLLSLTIAYQMHY 63 Query: 75 -EQKTLVVSTANVALQDQIYSKDLPLLK------KIIPDLKFTAAFGRGRYVCPRNLTAL 127 E + ++ + ++ ++ + L+ D + R +C Sbjct: 64 PEHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKN-LCLHP---- 118 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 E +++ +D++ + KR + + + + + +I ++D L + + Sbjct: 119 ---EVSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGV 175 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLLV 246 + L + C CP+F+ RR I +++ ++ ++ +E V + K+ +++ Sbjct: 176 FS--FEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVI 233 Query: 247 LDEGHHLPDVARDALEMSAEITAP--------WYRLQLDLFTKLVATCMEQFRPKTIPPL 298 DE H++ +V ++L + A ++ K+ + ++ K + L Sbjct: 234 FDEAHNIDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGL 293 Query: 299 AIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 + L E E ++L +P F ++E + K+ + Sbjct: 294 HSADILTDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVS--FLKRLIEYLKTRMKVLHV 351 Query: 359 LRGLAELFLNDLSEKT--GSHDIVRLHRLILQMNRALGMFEAQSK-----LWRLASLAQS 411 + + FL L + T + + + R L + E + + A+L + Sbjct: 352 ISETPKSFLQHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLIST 411 Query: 412 SGAPVTKWATREE--REGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 E + + S + + ++ +I+TS T+ L+ + Sbjct: 412 YEEGFLLIIEPYEIENAAVPNPIMRFTCLDASIAI-KPVFERFSSVIITSGTISPLDMYP 470 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNH-----CEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 R+ + +K+ +A S +Q I I N+ + + Sbjct: 471 RMLNFKTVLQKSYAMTLAKKSFLPMIITKGSDQVAI-----SSRFEIRNDPSIVRNYGSM 525 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLM----------LLVQGDQPRYRLVE 574 + + GM+V F S M+ + + ++ + Q +E Sbjct: 526 LVEFAK-ITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALE 584 Query: 575 LHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 +RK +NG ++L+ + +EG+D V + I F +S ++ E+++ Sbjct: 585 TYRKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFMRE 644 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 R A + Q +GR++R +G +V+ D+R K LP + Sbjct: 645 NYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSRKR------SQLPKWIA 698 Query: 693 EQPEVPEG 700 + + Sbjct: 699 QGLSDADL 706 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 143/681 (20%), Positives = 244/681 (35%), Gaps = 46/681 (6%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 PR QR+M V + L+ EE L +EAPTG GKT YL P + ++K V+T Sbjct: 242 PKPRPAQRRMFQLVEEALSREE--ILLLEAPTGTGKTKGYLYPVL----HQRKPTWVATH 295 Query: 85 NVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 LQ Q + L + + ++ +CP L E ++ Sbjct: 296 TKVLQAQAMEE-LRAVAQKGYQVRAALVKSPQDTLCPDRLLEAFLREARS----GKPGED 350 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 + A+ DL+ + ++ R+ T+ C R C + Sbjct: 351 VGAAIAVLLHYAAQRGHDLEALPA----YWHFLEGFREVRGRVGTNPDRC-RRECPFASA 405 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMS 264 C + R +EA+++V N A ++ ++ E LP+ + LVLDE HHL DVA +AL + Sbjct: 406 CAYQAILRRREEAQILVTNQAYLLHSLLGEKALPEAR-PALVLDEAHHLEDVATEALTLK 464 Query: 265 AEITAPWYRLQLDLFTKLVATCMEQ---FRPKTIPPLAIPERL-NAHCEELYELIASLNN 320 + + L+ + +++ + A E L + E + + + Sbjct: 465 VDGEGLRHLLEALANPSKRSGLLQERDYLKSLEDDLRASAETLAEEAVPKALEALKAYSE 524 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLS--EKTGSHD 378 + ++ + + + L R L + E Sbjct: 525 RMERFLKRRGVGSPEHGLTLPLEPSWTRDEEYPLLDREERHLIQSLEALAKGLEGLLDAH 584 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L+ ++ L +L+ A TR + I Sbjct: 585 PPPWPLLLREIRPLLQELRQAIRLFLRRKRVLKGEADEALHLTRLDPVTGTWSHL-AEPI 643 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSL-----NSFSRLQEMSGLKEKAGDRFVALDSPFN 493 V+ +LE LW + +++TSATL F+ LQ GL R L Sbjct: 644 EVAAELEEKLWPAFRGVVLTSATLAVPTETDPEGFAFLQRALGLP--PQARAERLPPSLP 701 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 + + +++PR E + + R + L LF S ++ Sbjct: 702 Y-HRAHLLVPRHLPEARESTLPRFQRLLHRELRLVLGQVP--RTLTLFTSLSRLEAAKKA 758 Query: 554 VTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKI 613 + DL + + R V R E +G +SF EG+DL L V++ ++ Sbjct: 759 LEDLPHLRAPLTRREREDTVRF--ARSNPTEPLAALGSRSFMEGVDLPH--LRVVNLERL 814 Query: 614 AFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW-----GEVV 668 FP SP++ P+E LP A + +Q GRLIR G + Sbjct: 815 PFPYP-SPLLKRRMALAYERGLDPWEDYYLPKAVLSFVQAFGRLIR--DDRQVAGDGAFI 871 Query: 669 IYDKRLLTKNYGKRLLDALPV 689 ++DK+LL +Y + ALP Sbjct: 872 LWDKKLLHADYQELFYRALPD 892 >UniRef50_C6LHG2 Putative helicase n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHG2_9FIRM Length = 915 Score = 312 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 110/747 (14%), Positives = 237/747 (31%), Gaps = 80/747 (10%) Query: 20 EQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 P R Q+ + A V +T+A E+ L I+APTGVGKT++ + P + E Sbjct: 185 VVFPYP-YREGQKDLAAAVYRTIAREKK--LFIQAPTGVGKTIATVFPAVKAVGEGLGDK 241 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP---------RNLTALAST 130 + + + + LLK K + + +C + A Sbjct: 242 IFYLTAKTITRTVAQEAFSLLKAQGLQYKVLTLTAKEK-ICLCGEPDCNPEKCPYAQGHF 300 Query: 131 EPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYK----------------------- 167 + + L P+ E+ +R + + + Sbjct: 301 DRVNDAVYELLTGWGKPDAGEQAERGKQKPEEPECGPEIPEGMRMPAEHGTEKTEEPACG 360 Query: 168 ---WDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 +G+R + + ++ + L + ++ CPF ++ + V+ ++ Sbjct: 361 PEIPEGVRTPAERPEEQEISGLRDSYTRENLIAHAKKWQVCPFEMSLDLSLWVDAVICDY 420 Query: 225 ALVMAAMESEAVLPDPK---NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK 281 V + + ++DE H+L + R+ + + + L Sbjct: 421 NYVFDPQARLKRFFADGGRGDYIFLIDEAHNLVERGREMYSAA--LYKEDFLEMKRLLAP 478 Query: 282 LVATCMEQFRPKTIPPLAIPER-----LNAHCEELYELIASLNNILNLYMPAGQEAEHRF 336 + L L + + +++ L + G +R+ Sbjct: 479 VSRKAARALDKCNKYMLEWKRDCEGYSLCSDIAVFALALLNVSTQLETLLEDGDSPLNRY 538 Query: 337 -AMGELPDEVLEICQRLAKLTEMLRGLAE--LFLNDLSEKTGSHDIVRLHRLILQMNRAL 393 E Q+ + E + + ++ + ++ + Sbjct: 539 QTQPESVYGAGTHRQQRSARGAQAHRQPEDGSYAQEYLPGMQPEELPQAPETGAELRK-- 596 Query: 394 GMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIP 453 + E ++ ++ + + E +G+ L C I + ++ L Sbjct: 597 KVLEFYFQVRSFLAIYEELDESYEIYTEH-EADGRFKLKLFC--IDTAGKIGECL-DRGR 652 Query: 454 HIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDN 513 + SATL + + L L D + SPF+ ++ K+++ Sbjct: 653 AAVFFSATLLPIRYYMDL-----LSGTQEDYAIYAHSPFDLKKK-KVLVGTDVSSRYTRR 706 Query: 514 EEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTD--LRLMLLVQGDQPRYR 571 + ++AA+ VE++ LV F S + ++ + ++ Q + Sbjct: 707 GPEEYQKIAAYIHCAVEARA-GNYLVFFPSYKMLEDIRAVFEAAYTDVRVIAQNPRMTEE 765 Query: 572 LVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEG 627 E + L G F EG+DLK L I P I + I + Sbjct: 766 EREEFLACFSENNTQTLAGFCVLGGIFGEGIDLKRKKLIGAVIVGTGLPQICNEREILK- 824 Query: 628 EWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDAL 687 ++ + F ++Q GR+IR+ G +++ D+R + Y L Sbjct: 825 QYYDRRSMDGFAHAYQYPGMNKVMQSAGRVIRTDEDTGVILLLDERFCRRQY-------L 877 Query: 688 PVFPIEQPEVPEGIVKKK-EKTKSPRR 713 +FP E + ++ EK K + Sbjct: 878 DIFPREWADYETCSLRTAPEKLKYFWK 904 >UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4L4_9FIRM Length = 834 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 120/723 (16%), Positives = 214/723 (29%), Gaps = 72/723 (9%) Query: 6 ALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLA-----GEEGRHLAIEAPTGVGK 60 AL Q P R QR + +V + A + G L +APTG+GK Sbjct: 172 DWVEARNRSLGAL--QFPFPAYRPGQRALAGEVYRACAAGKAEQKGGTRLFCQAPTGIGK 229 Query: 61 TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC 120 T+S L P + E + + L L+ P L Sbjct: 230 TMSALFPALKAMGEGKGEKIFYLTARNTTQAAAEDALARLRAADPALS------------ 277 Query: 121 PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID 180 L S + ++ D + C G + K D L D D A+ Sbjct: 278 ------LRSVTLSAKEKACLCKDAEG-RPACLPEACPYANGYYERLK-DALADLLDSAVP 329 Query: 181 DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP 240 D + L +R CPF + + +VV+ ++ + D Sbjct: 330 YD---------RAALTETARRHRVCPFELGLDLSEWCDVVIGDYNYLFDPTVHLRRFFDA 380 Query: 241 -KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLA 299 + + ++DE H+LPD AR ++ K + L Sbjct: 381 AGDYIFLIDEAHNLPDRARAMYSARFCKSS--LTDARRAIGKGKSALKTALTKADRGFLE 438 Query: 300 IPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEML 359 + + + E A LP+ +L T L Sbjct: 439 ARRAVTKLAPRRGPAPTESPAEDLTQQTSLLDTEPAEAAFPLPEPLLA-----QDGTVFL 493 Query: 360 RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKW 419 + L + L L + + + + + E + + A+ A Sbjct: 494 QELPKELLRLL--FSLQAPLQDWLEANPEADAHAQLLELYFAVQDITRAAERYDAHFVTQ 551 Query: 420 ATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKE 479 T E L + + + + + + SATL + + G + Sbjct: 552 LTARGSE----LEWELLCLDPAP-FVDASLAAGRAAALFSATLTPPG---YYRSVLGCPD 603 Query: 480 KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLV 539 R VAL+SPF G +P + + E + ++ +K L Sbjct: 604 ---ARAVALESPFPPEHLGLYCLP--GISTRYRDREASVQAVSDALAALARAKV-GNYLA 657 Query: 540 LFASGRAMQRFLDYVTDLRLML--LVQGDQPRYRLVELHRKRVANGERSVLVGLQS---- 593 F S +++ + T + L Q ++ L+G Sbjct: 658 FFPSYAYLRQVHEDFTARYPDIGTLAQESGLDDAARAAFLEQFGPSPAKTLLGFGVMGGI 717 Query: 594 FAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQ 653 F EG+DL GD L I + P ++ P + F+ ++Q Sbjct: 718 FGEGVDLVGDRLIGCAIVGVGLPQVN-PRQEILRRYYDEAGGTGFDYAYRFPGMNKVLQA 776 Query: 654 VGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRR 713 GR+IR+ G V++ D R Y + Q + + +++ + Sbjct: 777 AGRVIRTQEDRGVVLLLDDRFARGEYTRLF-----PRHWHQLQYLRSTTELEQQLAAFWA 831 Query: 714 RRR 716 R + Sbjct: 832 RNQ 834 >UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NXQ7_9BACE Length = 684 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 120/714 (16%), Positives = 238/714 (33%), Gaps = 95/714 (13%) Query: 8 KAQIAAWYKALQEQI------PDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKT 61 KA++ + + + R Q+ M ++ L ++ H AIEA G+GK+ Sbjct: 22 KAELYSMSEQVSTFFWDEAPQHGLEMREGQQDMSFEIVDALINDQ--HFAIEAGVGIGKS 79 Query: 62 LSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCP 121 YL+P + ++ K ++++T+ +ALQ+Q++ ++ + + A G+ Y+C Sbjct: 80 FGYLVPVLLYSKRMNKPVIIATSTIALQEQLWRDVHTVMPLLGLNRDVILAKGQTHYLCN 139 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDH--TDIAI 179 + L G + + Sbjct: 140 KRADEYMCDPKADP------------------------PDALKEGIKQGYEERKVFPEVL 175 Query: 180 DDDLWRRLSTDKASCLNRNCYYYR-ECPFFVARREIQEAE-VVVANHALVMAAMESEAV- 236 +W +++ + S +NC +C ++ R ++ + VV+ N + + Sbjct: 176 PQGVWDKVNVQRFS--MKNCGSCEKKCKYYKVRAALKFTDGVVLCNQDFLTQHLMKLRRG 233 Query: 237 ---LPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 L + LLV+DE H+L D R A R + ++ + + R Sbjct: 234 QDGLINAAADLLVVDEAHNLDDKVRSATT---------ERFGQGMLFGMIKSAFYELRSS 284 Query: 294 TIPPLAIPER-LNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRL 352 ++ +R + Y + + RF + + + Sbjct: 285 DQSSVSGEKREAESAIIAFYNCLKAQVQKQINEAEQDMRYADRFFFDNNGSAIELLTEMN 344 Query: 353 AKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSS 412 A + + + D L + ++ L + Sbjct: 345 AAIHNLSSSIQIYSSMDFRNNRSFAASDDLDAVSESLSELLDRID--------------- 389 Query: 413 GAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATL------RSLN 466 + W + + + + RL + I+TSATL Sbjct: 390 --DMLIWIEQHGS----NTELVYCPKNTKEIVSRLYFNGDERTILTSATLTNATSGSLEE 443 Query: 467 SFSRLQEMSGLKE-KAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFF 525 +S +G G SP+ + E I P+ + I + Sbjct: 444 QYSYFISNTGFPAGDRGCLSEPKPSPYPYDEHAMIYYCDDLPHPT-REHDAFIEKGVERL 502 Query: 526 RKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLM--LLVQGDQPRYRLVELHRKRVANG 583 + + S + LVLF + M+ +++ L +L+Q V Sbjct: 503 LE-ILSISNGKALVLFTAKTDMEEVYSILSEKNLPYKILMQQPGSSQDKV---LNEFKED 558 Query: 584 ERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSL 643 SVL+G ++ EG+ ++G LS V I ++ FP P++ + S+ + + Sbjct: 559 TNSVLLGTGAYWEGISIEGKSLSNVIIFRLPFPVP-DPIIEYKC----SVAKDALMDVRV 613 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL---TKNYGKRLLDALPVFPIEQ 694 P L Q +GRLIR+ G V I D+RL ++ Y D+LP+ Sbjct: 614 PEMIIKLKQGIGRLIRNFTDTGIVCIIDRRLRDEPSERYHDITWDSLPIKNRTS 667 >UniRef50_A0C5Z5 Chromosome undetermined scaffold_151, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0C5Z5_PARTE Length = 702 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 111/712 (15%), Positives = 246/712 (34%), Gaps = 66/712 (9%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 ++ P Q + + + +TL +E H +E PTG GKT+S L +A + Sbjct: 6 DDIEVIFPYKFLYKEQLEYMQALKQTL--DEKGHGILEMPTGTGKTVSLLAFILAYLAQR 63 Query: 76 QKTL---VVSTANVALQDQIYSKDLPLLK----KIIPDLKFTAAFGRGRYVCPRNLTALA 128 T+ + T V ++ + ++K + + D R +C + Sbjct: 64 PNTIKKLIYCTRTVVEMEKTLEEVRLVMKARKAEGLNDNFTAVGLSSRRNLCINP-DVVN 122 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 + + + + E + + D + + + Sbjct: 123 QKDRVDSECRKRTAEWVKRGQSE----ICIFYDNFEKSAKDFIANLPN-----------D 167 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLLVL 247 S L +N + +CP++ AR +++A +VV N+ ++ S + D K ++V Sbjct: 168 VYSLSDLRKNGGFSMQCPYYTAREMVKKANIVVYNYLYLIDPGISSLLSKDYIKESVVVF 227 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H++ DV +A + RL + + + I RLN Sbjct: 228 DEAHNIDDVCIEAYTV---------RLNKPILAEAINNLKVVETQIQSETNEIQNRLNEE 278 Query: 308 CEELYELIAS-LNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 ++L + + LN + GQ + R + + + + + L + + L + + Sbjct: 279 YKKLIKNLEKKPEGELNQLVIPGQIRKARNFIDFMKRIIQKHQKHLMLFYIIPKALLKRY 338 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 ++ G+ DI L + ++N L + T + Sbjct: 339 -----KRKGNLDIDSLKQCGERLNLLLNTLQIAET--------DKFRPLSTVAQFVIRIQ 385 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 L+ + S + ++ S +I+TS T+ ++ + ++ + + K+ D + Sbjct: 386 RTLNEKLMTLACFDSSLAMKNIFASFQSVILTSGTMSPIDIYPKILDFKPVVAKSIDIEL 445 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRA 546 +S + E + N E F + E+ G++V S Sbjct: 446 TRNSIQPIIVTMSEDGTELTSEFTFRNNEDVSRNYGNFLLELSENV-PDGLIVFMPSYSR 504 Query: 547 MQRFLDYVTDLRLM----------LLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSF 594 M+ + + + + + + ++ +RK G + L + Sbjct: 505 MEEWARQWQKDKYLEQISKNKVLLIESKDVNETSQKLQQYRKCCDVGRGAALFSIARGKI 564 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 AEG+D +G V + +++ ++L+ + A Q + Sbjct: 565 AEGIDFEGHYGRCVAVIGFPALNSKDTLILERCKFLEEKFKITKNDFIEFDAMRQTCQCL 624 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKE 706 GR++R +G +++ DKR K+ L +P + +Q + + E Sbjct: 625 GRVLRGKQDYGIMIMADKRFAQKS----KLSKMPRWIYKQLDQSRCLNITSE 672 >UniRef50_Q9BX63 Fanconi anemia group J protein n=28 Tax=Euteleostomi RepID=FANCJ_HUMAN Length = 1249 Score = 311 bits (796), Expect = 7e-83, Method: Composition-based stats. Identities = 100/682 (14%), Positives = 213/682 (31%), Gaps = 78/682 (11%) Query: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQD 136 + T QI + L++ + C + + Sbjct: 244 PKIYFGTRTHKQIAQITRE----LRRTAYSGVPMTILSSRDHTCVHP--EVVGNFNRNEK 297 Query: 137 LLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLN 196 + LD + Y + G+ +D L Sbjct: 298 CMELLDGKNGK----------------SCYFYHGVHKISDQHTLQTFQGMCKAWDIEELV 341 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDV 256 + CP++ AR IQ+A+++ + ++ A E++ + K +++LDE H++ D Sbjct: 342 SLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDC 401 Query: 257 ARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPL--AIPERLNAHCEELYE- 313 AR+ S +T R D +V + + + + + ++ L A+ E L E Sbjct: 402 ARE--SASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVER 459 Query: 314 ------LIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 I S N +L G + VL+ ++++ + + Sbjct: 460 DYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVI 519 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFE-AQSKLWRLASLAQSSGAPVTKWATREERE 426 + ++ + L L Q +R ++ A + + + S + ++ Sbjct: 520 SASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKR 579 Query: 427 GQLHL---WFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGD 483 + + + + + + I++TS TL + SFS G+ Sbjct: 580 SRQKTAVHVLNFWCLNPAVAFSD-INGKVQTIVLTSGTLSPMKSFS---SELGVTFTIQL 635 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDN--------EEQHIAEMAAFFRKQVESKKHL 535 + + ++ + + P N E + V Sbjct: 636 EANHII------KNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQ 689 Query: 536 GMLVLFASGRAMQRFLDYVTDLRL----------MLLVQG--DQPRYRLVELHRKRVA-- 581 G+L S + +++ + L ++ QG L++++ + Sbjct: 690 GILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYK 749 Query: 582 -NGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL----KSLN 634 + ++LV + +EGLD D V I FP + V + ++ K Sbjct: 750 GEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRG 809 Query: 635 RYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQ 694 P A L Q +GR IR WG +++ D R R + L + +Q Sbjct: 810 LLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNP--SRYISGLSKWVRQQ 867 Query: 695 PEVPEGIVKKKEKTKSPRRRRR 716 + E ++ + Sbjct: 868 IQHHSTFESALESLAEFSKKHQ 889 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 ++ P + Q M+ + + L ++ H +E+PTG GK+L+ L +A + Sbjct: 11 GGVKIYFP-YKAYPSQLAMMNSILRGLNSKQ--HCLLESPTGSGKSLALLCSALAWQQ 65 >UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355EC Length = 765 Score = 311 bits (795), Expect = 8e-83, Method: Composition-based stats. Identities = 133/700 (19%), Positives = 248/700 (35%), Gaps = 85/700 (12%) Query: 28 RAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR--EEQKTLVVSTAN 85 R Q+++ + + L +E + EA G GKT +Y++ + + ++ST+ Sbjct: 122 RKSQKELALSMLRAL--QENKLALCEAEVGTGKTHAYILAVTIHNLFSQSKTPTMISTST 179 Query: 86 VALQDQIYSKDLPLLKKIIPD-------LKFTAAFGRGRYVCPRNLTALASTEPTQQDLL 138 +ALQ+ I + +P + +I+ + L F G+ +VC L S+ Q Sbjct: 180 IALQEAITKEYIPQISRILLEHRIIDKPLSFVVRKGKSHFVCDSRLKTYESSIRNQNRP- 238 Query: 139 AFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRN 198 +D+ E R + + D + + R++ + S Sbjct: 239 ---EDQGLLAQLGELWR-----------EQEHYLDLDGFPLTPYVKERINVSQCS---EF 281 Query: 199 CYYYRECPF--FVARREIQEAEVVVANHALVMAAMESEAVL---PDPKNLLLVLDEGHHL 253 C + C F F R + + ++NH ++A + + P + V DE H L Sbjct: 282 CPHSSYCRFASFSRRWLSESYDFQISNHNYILADVVNRREGKKKLLPYYNIAVFDEAHKL 341 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 D AR + L + V + R + E+ ++ Sbjct: 342 IDAARQIYCTRLSENEIPKLIHLISPERFVDKSSQ--RQMMELCTGLSEKNTRLFQKTGG 399 Query: 314 LIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEK 373 N + N+ ++ R + +L + ++ + + G + N Sbjct: 400 AFIQSNQMENISRTIEEDRSTRLWIRDLIGMLEKLGRIFVTVKMDSCGRVKTIRN----- 454 Query: 374 TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWF 433 + ++N L + W + + G L F Sbjct: 455 -------TAQSIEDRLNVFLSAKQN------------------ISWIEKSDSGG---LEF 486 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD---- 489 + + L LW + H I+TS T+ +F + M+G+ ++ Sbjct: 487 CSLPRELERILYHDLWHTGVHSIITSGTISVGGNFDHFKRMTGIDLLQPQNRRVMEVSKL 546 Query: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 SPFN+ + + IP P I ++E++I ++ + L+LF+S M+R Sbjct: 547 SPFNYSQNAILYIPEELPFPDI-HDEKYIEAISREIIHLIC-ATFGHTLILFSSYWLMER 604 Query: 550 F-LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 + +++ L + R ++E R+ VL S EG+DL GD+LS V Sbjct: 605 IFYEVKQEIQSFPLFIMKRGRMDMIEKFRR----SGNGVLFASDSAGEGIDLPGDILSSV 660 Query: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 I K+ FP + ++ + P L Q GR IR Sbjct: 661 IIVKLPFPVPSPILEYERTKYDD--FSQYVKEIITPGMIIKLRQWFGRGIRRETDTAVFS 718 Query: 669 IYDKRL-LTKNYGKRLLDALPVFPIE--QPEVPEGIVKKK 705 I D R+ + Y +L ALP P+ E+ I +KK Sbjct: 719 ILDSRVGIHGRYRDDVLKALPDMPVTGRIEEIRRFIAEKK 758 >UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REN5_9FIRM Length = 806 Score = 309 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 118/696 (16%), Positives = 214/696 (30%), Gaps = 107/696 (15%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 P R QR++ V KT+ + L +APTG+GKT+S L PG+ E + + Sbjct: 209 FPFPEYRKGQRKLAIAVYKTILDHD--ILFAQAPTGIGKTISTLFPGLKAIGEGKIEKIF 266 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 + Q+ L L K K A T +D + L Sbjct: 267 YVCAKNITAQVAYDALQQLYKQNLHFKSVAI--------------------TAKDKICLL 306 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 + + + C KG + K +L + L Sbjct: 307 AERNC-----DPQNCPYAKGYYNRNKNALY----------ELITQHDFIDYERLVEYGKK 351 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMES-EAVLPDPKNLLLVLDEGHHLPDVARDA 260 Y CPF + + ++V++ ++ V + D N L ++DE H+L D AR+ Sbjct: 352 YVVCPFELGLDACEYSDVIIGDYNYVFDPRVYLKRFFIDKGNYLFLVDEAHNLVDRAREM 411 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN 320 + +L++ LN Sbjct: 412 YSAELSKQDFQIIKAY---------------------------IPKSFAKLHKAHHHLNK 444 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 +E + F + E N+L+E Sbjct: 445 QFISLRKQCEEKQLDFLAQKEAMPFF-------------LQCLEKLTNELNEYLEGIHEN 491 Query: 381 RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRV 440 + + ++ K +A+ T R++++ +W + Sbjct: 492 EMEDALRELYF---------KALHYQRIAEFYDEHFTTCIQRQKQD----VWIRQYCMNP 538 Query: 441 SDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI 500 S ++ +L R I SATL + + G + ++L SPF E + Sbjct: 539 SQPIKNIL-RKGRATIFFSATLSPI---DYYLTLLG--GNHDSKRLSLPSPFP-KEHVHV 591 Query: 501 VIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL--R 558 +I Q I + + + + ++ S M++ ++ Sbjct: 592 MIANQI-STRYRQRSQSIDAICELLYATITQR-NGNYILFAPSYAYMKQLYEHFIKSYPD 649 Query: 559 LMLLVQGDQPRYRLVELHRKRVANGERSVL---VGLQSFAEGLDLKGDLLSQVHIHKIAF 615 + + Q + + + L V F+EG+DLKGD L V + + Sbjct: 650 IDVFYQQQDMTEEEKQTFLAQFQISKHLRLYFCVCGGMFSEGIDLKGDALIGVILVGVGL 709 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 P I+ P + N+ + ++Q GRLIRSH G ++ D+R Sbjct: 710 PQIN-PYSDLIRQHFDEENQQGYAYAYQYPGMNKILQSAGRLIRSHEDKGILLFIDERYT 768 Query: 676 TKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSP 711 + +Y L L + I E + K Sbjct: 769 SLHYRGALPSHLHPYTIVHTP-QEVRSSTQAFWKKA 803 >UniRef50_Q01BG6 Helicase of the DEAD superfamily (ISS) n=2 Tax=Mamiellales RepID=Q01BG6_OSTTA Length = 970 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 119/793 (15%), Positives = 232/793 (29%), Gaps = 133/793 (16%) Query: 1 MALTAALKAQIAAWYKALQEQIP-DFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVG 59 MA + Q + P P Q ++ + +TL +E H IE+PTG G Sbjct: 90 MAFEKDTRKFTTRMIGGCQVKFPEGLDPHPAQMMTMSTIIRTLTRKE--HAMIESPTGTG 147 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQ---------------------------- 91 KTL+ L +A + + ++ S A++ Sbjct: 148 KTLALLCGALAWQEKNKVEMMASGMTTAVERAKYEKARVEYLMQKCDPTRKKPPVCAQGP 207 Query: 92 ----------------------IYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALAS 129 I S+ L +I+ +LK T R + R Sbjct: 208 GWSADDEYFKPGSGSSMNPKIFICSRTHSQLGQILGELKRTGYSPRYSVLSSRQRMCQMQ 267 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLK---GDLDTYKWDGLRDHTDIAIDDDLWRR 186 + L D+ K ++ Y +G + A D + + R Sbjct: 268 KNDAECKQLIGSDEGKKKTGTTGCPYYNKHTHVVRAMERYPLNGSQGMYPQAWDMEDFER 327 Query: 187 LSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLV 246 + + C FF R+ + A+VV + + + + + ++ Sbjct: 328 VVDEVDG-----------CSFFALRKMYESADVVFCPYNYLFDINIRRKMSIETEGACVI 376 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 +DEGH++ DV R+ + + V M+ L Sbjct: 377 IDEGHNIEDVCREGASAEFSL-------------QAVGEAMDALSKNLGHVNVETNMLAD 423 Query: 307 HCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELF 366 + + + Q + + E+ + +A L+E + L Sbjct: 424 FFRSISAFLEDMFRTNRAESTIIQSNQVPSFLQEMLSRF-DAAHDMATLSETVNDLMTTK 482 Query: 367 LNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREERE 426 L+ + I L + A EA + ++ + S P Sbjct: 483 AKHLT-PIVAPHISLAGDLASIVTMASTQPEAYNVIFGMKVDINSDSCPGVI-------- 533 Query: 427 GQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV 486 C+ V+ + + +I+TS TL + +F + G++ A Sbjct: 534 ------IQCMKPSVA---FNSVAKKARSVILTSGTLSPMTTF---EAELGVRFGAKIEAP 581 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNEE------QHIAEMAAFFRKQVESKKHLGMLVL 540 + E + + E + E + + + + + GMLV Sbjct: 582 HVV----PNENVYVEVTGALGEITYKATESENAGRRFAQNLGNYLLRYAK-IIPGGMLVF 636 Query: 541 FASGRAMQRFLDYVTDLRLM----------LLVQGDQPRYRLVELHRKRVANGERSVLVG 590 F ++R + L +G + + R S+++ Sbjct: 637 FPKYSLIERVVREWHMSGLFGQLNDHKFLCCETRGAKGFQETLNQF-DRGNTRSGSLMLA 695 Query: 591 L--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWL-----KSLNRYPFEVQSL 643 + +EG+D K D V I FP + P V + E+ K Sbjct: 696 VYRGKVSEGIDFKDDKARAVFCVGIPFPSVFDPRVKAKKEFNDSPTSKQQGMLAGGEWYR 755 Query: 644 PSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVK 703 A Q +GR IR + + + D R G +L+ + + + + Sbjct: 756 AQAYRAYNQALGRCIRHPKDYAALFLVDARFREG--GAWMLNNISKWIRNNTRASDDVNV 813 Query: 704 KKEKTKSPRRRRR 716 + + +R R Sbjct: 814 SVRQVSAFFKRLR 826 >UniRef50_A4S0W9 Predicted protein n=2 Tax=Ostreococcus RepID=A4S0W9_OSTLU Length = 1067 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 105/783 (13%), Positives = 220/783 (28%), Gaps = 138/783 (17%) Query: 19 QEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ-- 76 + + P P Q Q+++ V + G +E+PTG GKTL+ L +A + E Sbjct: 42 EVRFP-LTPYKSQVQVMSAVVRA--ARRGTCALVESPTGSGKTLALLCAALAWSESESER 98 Query: 77 ------------------------------KTLVVSTANVALQDQIYSKDLPLLKKIIPD 106 + +T A QI + L + Sbjct: 99 REDVGVDDDEDGEEDEARKRETKRIGNGKPPKIYYATRTHAQIAQIVGE----LSRTAYK 154 Query: 107 LKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTY 166 R Y C + + +D + + + L + Sbjct: 155 PHTVVLASREHY-CVNK--SARKGGDVNAECRRLMDAGAAGGDGKGCFYSGQGASKLASL 211 Query: 167 KWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHAL 226 + D DI L + + CP+F ++ + AE++ + Sbjct: 212 AKN-HPDALDI---------------EDLVKMGTSKKGCPYFASKIMAESAELIFCPYNY 255 Query: 227 VMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATC 286 ++ A+ D + L++ DE H++ D AR+A + + ++ Sbjct: 256 LLDPRTRSAMDIDIEGSLIIFDEAHNIEDTAREAASEEIILDDVANAIDR------LSEM 309 Query: 287 MEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVL 346 + + + + + + QEA GE + L Sbjct: 310 RRRATANVSECELVLRSMKGVYDWFIGFCDE--KSPSYGLKQAQEALSAMVRGEQILQTL 367 Query: 347 EICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV------RLHRLILQMNRALGMFEAQS 400 + + + E + V +++ + L E + Sbjct: 368 AEAGLTEESVLEVMRALGVITKYNQENKDPKERVAGSVFNTCEKVLNPIKFLLSRGEVTA 427 Query: 401 KLWRLASLAQSSGAPVTKWATREEREGQLH----LWFHCVGIRVSDQLERLLWRS--IPH 454 + +++ V +L + + + + L+ + Sbjct: 428 RDYKIVFTKTRESDRVVSTQRVNSELNRLPVEELVKINFWALNPALAFRELVSENGGARS 487 Query: 455 IIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVE------ 508 +++TS TL LNSF G+ + Q I Sbjct: 488 VVLTSGTLAPLNSF---ASELGVPFPIRMEAPHC---VDMDRQVWGGIVAAGPSNIALNA 541 Query: 509 PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQP 568 + + + V G+L+ F S ++ + + L+ ++ Sbjct: 542 GYKSRGDTSFQDELGACLRDVAKVTPHGLLMFFPSYSLLETIVRRWRETGLLRAIEQASG 601 Query: 569 R-------------------YRLVELHRKRVANG-----------------ERSVLVGL- 591 + ++E + VA ++L + Sbjct: 602 KKIFQEPGKSCSYGKKPVTLETVLEKYYSAVATSVKAAKHPYAPAPANAKCRGAILFAVC 661 Query: 592 -QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS---LNRYPFEVQSLPSAS 647 +EG+D V I +P I +V + + + A Sbjct: 662 RGKISEGIDFADANARAVICVGIPYPNIKDALVAAKRSYNEEGAHRGLLSGSKWYDQQAF 721 Query: 648 FNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEK 707 L Q VGR +R G +++ D R N + ALP + +P + + + ++ Sbjct: 722 RALNQAVGRCLRHRHDHGAIMLVDSRFNNSN-----IQALPKW--LRPAMQKSASRFGDQ 774 Query: 708 TKS 710 KS Sbjct: 775 VKS 777 >UniRef50_P18074 TFIIH basal transcription factor complex helicase subunit n=23 Tax=Eukaryota RepID=ERCC2_HUMAN Length = 760 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 125/745 (16%), Positives = 250/745 (33%), Gaps = 77/745 (10%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE- 74 L P Q + ++ +TL + H +E P+G GKT+S L +A R Sbjct: 6 DGLLVYFPYDYIYPEQFSYMRELKRTL--DAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 63 Query: 75 --EQKTLVVSTANVALQDQIYSKDLPLL----KKIIPDLKFT-AAFGRGRYVCPRNLTAL 127 E L+ + V +++ + LL K+ L F A + +C Sbjct: 64 PLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIH----- 118 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 P L D + ++ A+ + D + + L + Sbjct: 119 ----PEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGI 174 Query: 188 -STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLL 245 + D L R + CP+F+AR I A VVV ++ ++ ++ V + + ++ Sbjct: 175 YNLDDLKALGRRQGW---CPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVV 231 Query: 246 VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLN 305 V DE H++ +V D MS +T L T + RL Sbjct: 232 VFDEAHNIDNVCID--SMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLV 289 Query: 306 AHCEELYELIASLNNILNLYMPA-------GQEAEHRFAMGELPDEVLEICQRLAKLTEM 358 E + ++ N +P +LE + ++ + Sbjct: 290 EGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHV 349 Query: 359 LRGLAELFLNDLSE------KTGSHDIVRLHRLILQMNRA-LGMFEAQSKLWRLASLAQS 411 ++ FL+ L++ K RL L+ + L F + L A+L + Sbjct: 350 VQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVST 409 Query: 412 SGAPVTKWATR--EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 T + + H + S + + ++ +I+TS TL L+ + Sbjct: 410 YAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAI-KPVFERFQSVIITSGTLSPLDIYP 468 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMA-----AF 524 ++ + + +A ++I R + +I ++ + ++A Sbjct: 469 KILDFHPVTMATFTMTLA------RVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGN 522 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL----------MLLVQGDQPRYRLVE 574 ++ + G++ F S + M+ + + + + Q +E Sbjct: 523 LLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALE 582 Query: 575 LHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 +++ NG ++L+ + +EG+D V + + + S ++ E+L+ Sbjct: 583 KYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRD 642 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 + A + Q VGR IR +G +V DKR + LP + Sbjct: 643 QFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGD----KRGKLPRWIQ 698 Query: 693 EQ-------PEVPEGIVKKKEKTKS 710 E V EG+ K + Sbjct: 699 EHLTDANLNLTVDEGVQVAKYFLRQ 723 >UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacteria RepID=B0G3G8_9FIRM Length = 805 Score = 308 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 106/688 (15%), Positives = 214/688 (31%), Gaps = 131/688 (19%) Query: 20 EQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 + P F R Q+ ++ V +T+ ++ L I+APTGVGKT++ L P + E Sbjct: 188 VEFP-FAYREGQKNLVTSVYRTILRKKK--LFIQAPTGVGKTIATLFPAVKAVGEGLGDK 244 Query: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLA 139 + + + + L++ +K T +D + Sbjct: 245 IFYLTAKTITRTVAWQAFETLREQALRMKVIVL--------------------TAKDKIC 284 Query: 140 FLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA---SCLN 196 F ++ C KG D ++D ++ L++ L Sbjct: 285 FCEETNCNP-----DYCPYAKGHFDR-------------VNDAVYELLTSSDELNREILE 326 Query: 197 RNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLLLVLDEGHHL 253 ++ CP+ ++ + ++ ++ V + + L ++DE H+L Sbjct: 327 EQARKWKVCPYEMSLDVAVWVDAIICDYNYVFDPQAHLRRFFGEGNKGDYLFLIDEAHNL 386 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 + R S L I +++ E+L E Sbjct: 387 VERGRQMYSASI---------------------------CKEDFLGIKKKVRYEDEKLTE 419 Query: 314 LIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEK 373 + N L +E + ++ + ++L + L + E+ Sbjct: 420 RLEDCNRGLLAMKRECEEYKVLNSVSHIYLKLLNLVTELERFL---------------EE 464 Query: 374 TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWF 433 DI + E + + + ++ +G+ Sbjct: 465 CEKEDIRE------------EVLEFYFHIRSFMDIHERLDENYVIYSEL---DGEGKFRV 509 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFN 493 H + + L L + I SATL + + +L L D + +SPF+ Sbjct: 510 HLFCVNPAGNLGEFL-QKGNSTIFFSATLLPITYYKKL-----LSTGKEDYAIYAESPFD 563 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 + +++ E+ A + K KK LV F S R ++ + Sbjct: 564 VEHR-LLMVGGDVSTKYTRRNEEMYQRYARYLWKLANGKK-GNYLVFFPSYRFLEDVYEA 621 Query: 554 VTD--------------LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG----LQSFA 595 R+ + Q + E + L+G F+ Sbjct: 622 FEKIQEKEELEAFPALGHRITCVTQSQSMSEKGREEFLNTFEEERKESLLGFCVMGGIFS 681 Query: 596 EGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVG 655 EG+DL D L I P + I + ++ + F+ L ++Q G Sbjct: 682 EGIDLTEDKLIGAVIVGTGLPQVCREREILK-DYFDQHGQRGFDYAYLYPGMNKVLQAAG 740 Query: 656 RLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 R+IR+ G +++ D R + Y + Sbjct: 741 RVIRTDEDRGVILLLDDRFFDRRYQETF 768 >UniRef50_C4Z491 Putative uncharacterized protein n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z491_EUBE2 Length = 801 Score = 307 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 104/687 (15%), Positives = 210/687 (30%), Gaps = 131/687 (19%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 P + R Q+ + V + + E+ +L I+APTGVGKTLS + P + ++ + Sbjct: 189 FP-YEYREGQKNLCVSVYRAI--EDSANLYIQAPTGVGKTLSTVFPAVQALGQQMADKIF 245 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 + + + +L+ ++ T +D + L Sbjct: 246 YLTSKTITRTVAEDTYAILRDNGLHMRTVTL--------------------TAKDKICPL 285 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 D+ + G D + A+ D + ++ + + + Sbjct: 286 DERNCNP--------------VACPYAKGHFDRINDAVYDIITSQMVIGRDN-VMEYANR 330 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLP---DPKNLLLVLDEGHHLPDVAR 258 + CPF ++ + ++ ++ V S + + ++DE H+L D AR Sbjct: 331 HNVCPFEMSLDVSYWCDGIICDYNYVFDPDASLKRYFGNGAKGDYVFLVDEAHNLVDRAR 390 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 + K LA + + + L + Sbjct: 391 EMYSAVL---------------------------KKEDFLAAKKLVKEMDKRLAGALDRC 423 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 N L Y +G P + + + K + G Sbjct: 424 NKQLLEYKRQCDTFMVVSGLGTFPASLERVMGLMQKF--------------MERHKGEPV 469 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L + L M++ + + + +G + +C + Sbjct: 470 TNELLEFFFAVRHFLNMYDC-------------ADEKYVYYNEHD-NDGNFLVHLYC--V 513 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S + L + SATL +N F + L +R V S F + Sbjct: 514 DPSGNISERL-SQGRSTVFFSATLLPVNYFKEM-----LSGDVSERAVYAHSSF-EPDNK 566 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLD------ 552 +IV+ + A++ + + + +V F S M+ L+ Sbjct: 567 RIVVATDVTSRYTRRNAREYAKVHDYIMHMISGRS-GRYMVFFPSYSYMESVLECFRWEN 625 Query: 553 ------------YVTDLRLMLLVQGDQPRYRLVELHRKRVANG--ERSVLVG----LQSF 594 ++ + + +LVQG + E E + L G F Sbjct: 626 GVNVTECGGEYTFLPESCVNVLVQGRFMKEADKESFLSAFYEELPEGASLAGFCVLGGIF 685 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 +EG+DLK + L I P + I ++ + + + ++Q Sbjct: 686 SEGIDLKDESLIGAVIVGTGIPMVCRERNILR-DYFDEFGKNGYSYAYVIPGMNKVLQAA 744 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGK 681 GR+IR+ G + + D R +T Y + Sbjct: 745 GRVIRTDTDKGVIALLDDRFMTGEYER 771 >UniRef50_B7FQG3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQG3_PHATR Length = 791 Score = 304 bits (778), Expect = 8e-81, Method: Composition-based stats. Identities = 123/777 (15%), Positives = 235/777 (30%), Gaps = 119/777 (15%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + ++ P F P Q + V L E + +E+PTG GKTL L +A RE+ Sbjct: 42 RGVRVHFP-FRPYKCQETYMEKVLDALLRSE--NALLESPTGTGKTLCLLCSTLAWQREQ 98 Query: 76 QKTLVVSTANVALQDQIYSKDLPLLKKI------IPDLKFTAAFGRGRYVCPRNLTALAS 129 + L ++ + D LL + R + + L + Sbjct: 99 SRLL-------QQASELQNTDASLLANSQDAPARAARVPTIIYASRTHSQLSQVVRELRN 151 Query: 130 TEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLST 189 T Q + D++ N + +++ C+ + D K R D + Sbjct: 152 TRYRPQHAVLGSRDQMCVNPKVKKQGCSATDVNHDCSKLGKDRKCRFRNNLDGFTAPANE 211 Query: 190 DKA---------SCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL--P 238 + L ++ CPF+ R + +AE+++ + + L Sbjct: 212 NSGTNTQPVMDMEDLVTMGKSHKVCPFYYTRALVAKAELILVPYNYLFDKDARATTLSDI 271 Query: 239 DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQF-----RPK 293 N +L+ DE H+L A ++ T + M Sbjct: 272 PWDNAVLIFDEAHNLESFASESASFDLSNTDISGCIAEVQKAGNYLQAMPDLGSNLKEEN 331 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLA 353 + AI +L + L A + + G H Sbjct: 332 LVKLKAIFLKLEDYLMGLGNQTAYTGEFMMDFFQQGGGVNHSN---------------HE 376 Query: 354 KLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSG 413 E LR + +L L+ + + +L + + R G L + AS Sbjct: 377 IFIEELRKVNDLLLD-MRGTGATKGSPKLEHFVQCLKRVFGEKLESRCLAKSASYRVHVS 435 Query: 414 APVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQE 473 + + ++ + ++ + +E L ++ IIVTS TL L S+S Sbjct: 436 PKEQRQSGKQHIASRTVSYWCFAP---ALAMEELASLNVRSIIVTSGTLSPLPSYS---M 489 Query: 474 MSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVE-------PSIDNEEQHIAEMAAFFR 526 GL + S Q + + V + ++ +E+ Sbjct: 490 ELGLNFPHTLENPHIVS----DNQIHVRVIGKGVSGKELTSSYERRKDGEYYSELGNTLV 545 Query: 527 KQVESKKHLGMLVLFASGRAMQRFLDYV--------------------TDLRLMLLVQGD 566 + GMLV F S M+ ++ + +++ + Sbjct: 546 ALSK-VTPAGMLVFFPSYSVMETCIERWGGPSLNYNIKSPKTPWKRLLSTKSVVVEPKSS 604 Query: 567 QPRYRLVELHRKRVA--NGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPV 622 + + + +L+G+ +EG+D + V I + FPP Sbjct: 605 ANLPEAIADFHRFLGMLKSPGCILMGVCRGKISEGIDFANEQSRAVVITGLPFPPSFDAK 664 Query: 623 VITEGEWL---------KSLNRYPFEV----------------QSLPSASFNLIQQVGRL 657 V + ++L K+ N F A + Q +GR+ Sbjct: 665 VKLKRDFLDGARAIGSMKASNVGGFADNASSTSNLATKLSGHDWYAQQAHRAVNQAIGRV 724 Query: 658 IRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRR 714 IR+ +G V++ D R + + L + + EG R Sbjct: 725 IRNRSDYGAVLLLDSRFSQQRNQE----GLSKWVRPHLKKDEGFGTAVGALAKFYRE 777 >UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit n=37 Tax=Bacilli RepID=C0X4L0_ENTFA Length = 820 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 111/702 (15%), Positives = 215/702 (30%), Gaps = 121/702 (17%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R QR++ V KT+ ++ L +EAPTG GKT+S L P + EE+ + Sbjct: 213 SFPYGEYRKGQRELAVAVYKTILSKQR--LFVEAPTGTGKTMSTLFPAMKAIGEEEGERI 270 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + Q+ + L + S T +D + F Sbjct: 271 FYLTAKTITRQVAEDAVKALSE--------------------KQAQTKSITLTAKDKICF 310 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKA---SCLNR 197 L + DG D + + LW L + + R Sbjct: 311 LTERNCTPEHCPFA--------------DGYYDRLN----EGLWDLLQHENHLTREVIER 352 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP----KNLLLVLDEGHHL 253 ++ CPF ++ ++++ ++ + + + + ++DE H+L Sbjct: 353 YAQKHQLCPFELSLDASLWCDLIIGDYNYLFDPTVYLRRFFEEPQSAEENIFLVDETHNL 412 Query: 254 PDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYE 313 + +R+ + A L I +RL +L Sbjct: 413 VNRSREMYSAAISRNAV---------------------------LQIQKRLQKESVQLKR 445 Query: 314 LIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEK 373 + + +E + F P + L + + L E+ L E Sbjct: 446 ACQKVLTTFDDIEAICEEKDTDFFAQRAPID---------SLVKQIHRLTEVIAEWLPEN 496 Query: 374 TGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWF 433 ++ + L + E + + ++ Sbjct: 497 QHIEELASILSFYFDCLSYLRISEYYDNGFYTSISLRNYDC-----------------VV 539 Query: 434 HCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFN 493 + + L + L I+ SA+L LN QE+ G + PF Sbjct: 540 KQFCVDPAYLLSQRL-DKGKASILFSASLTPLN---YYQEVLG--GGEESLRYRIPYPFP 593 Query: 494 HCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDY 553 Q ++I + + N E+ +++ K E+K L+ F S M Sbjct: 594 EENQ-LLMIGSHL-QTTYKNREKSYPQISELLGKLSETKT-GNYLIFFPSYAYMDDVYQV 650 Query: 554 VTDLRLML--LVQGDQPRYRLVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLSQ 607 + + +QG + E + +G F+EG+DLKG L Sbjct: 651 FSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETFIGFCVLGGIFSEGIDLKGTRLIG 710 Query: 608 VHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEV 667 I + P ++ P + + F+ ++Q GR+IR G V Sbjct: 711 TIIVSVGLPQMN-PEQELIRTFYQEERGQGFQFAYQIPGMNKVLQAAGRVIRDARDKGFV 769 Query: 668 VIYDKRLLTKNYGKRLLDALPVF--PIEQPEVPEGIVKKKEK 707 ++ D+R + + P + + + I + K+ Sbjct: 770 LLLDERFELPSVQRFFP---PHWLAYRKAKTNEQLIQQVKQF 808 >UniRef50_A4S895 Predicted protein (Fragment) n=2 Tax=Ostreococcus RepID=A4S895_OSTLU Length = 749 Score = 304 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 108/770 (14%), Positives = 212/770 (27%), Gaps = 117/770 (15%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 +A P F Q + + G H +E+PTG GKTL L +A R E Sbjct: 19 RAFTVDFP-FEAYDNQLVFMEKALLAMCR--GEHALLESPTGTGKTLCLLASALAFVRSE 75 Query: 76 Q--------------------------------------------KTLVVSTANVALQDQ 91 +V +T + DQ Sbjct: 76 GRARKRKFREEVRDGRGGAGDADDVAGTSGREFVDDVEKKERTRAPVIVYATRTHSQVDQ 135 Query: 92 IYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQE 151 + + LK + T R C R+ + + + + Sbjct: 136 VVRE----LKLFDSTTRATTLASRRH-ACARDDVRALNGTEQKNRCAKLVQQQKCGAKVT 190 Query: 152 EQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVAR 211 + G D DG++D D L CPF++AR Sbjct: 191 LDRALQGRDGRFD-LFSDGVQDIED------------------LVSKAKARGPCPFYLAR 231 Query: 212 REIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPW 271 + EAE++ + ++ + + +N ++++DE H+L A D++ S Sbjct: 232 TKCAEAEIIFMPYNYLLDESVRKGLEIAWENAVIIVDEAHNLESSASDSMSYSLTAAKLA 291 Query: 272 YRLQLDLFTKLVATCMEQFRPKTIPPLAIPER----LNAHCEELYELIASLNNILNLYMP 327 ++ +E + I A L +L L+ S+ Sbjct: 292 KAIKESERAYETKLTLEDTSGEGIDAAAFKGEDFKMLTGVLVQLEGLLDSICREAAKAPN 351 Query: 328 AGQEA--EHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGS-HDIVRLHR 384 A E R G +L A E + L + + + + Sbjct: 352 AKHEGGLGERIGDGAFIYVILAELNITADTYEHITKLIKSASRTVQLGSDFMAQPTQNET 411 Query: 385 LILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQL 444 ++++ + + + + L Sbjct: 412 PLMEIGNFIERIFVHRYEQYFVTRLGPDMEKF-----KTSNRARAGPTLSYWCFFPGLCL 466 Query: 445 ERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPR 504 + L+ + + ++ S TL + SF L + Q + Sbjct: 467 KALIDKGVGTFLLASGTLSPMESF---ASELALDFPVRLENPHVI----KRNQVWGGVVT 519 Query: 505 MRV-------EPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL 557 + ++ E+ + G+LV F S M +++ Sbjct: 520 HGPNNGVLNSSFRFRDTREYKTEIGSVILSTA-RIVPDGLLVFFPSYGVMHSCVNHWRST 578 Query: 558 RL----------MLLVQGDQPRYRLVELHRKRVANG--ERSVLVGL--QSFAEGLDLKGD 603 L ++ + + + K + + + +EG+D Sbjct: 579 GLWNQLETNKTCLVEPSNADEFHACYDSYNKALEEDSRRGAAFFAVCRGKLSEGIDFADK 638 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSL-----NRYPFEVQSLPSASFNLIQQVGRLI 658 V + I + P+V+ + +L Y +A + Q +GR+I Sbjct: 639 ACRGVILTGIPYAGAKDPLVMHKRTYLDKRKADNGGAYSGNEWYSQTAMRAVNQALGRVI 698 Query: 659 RSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKT 708 R +G V++ D+R +N +L L + KE Sbjct: 699 RHKDDFGAVILADERFANENARNQLSLWLRPSVQVHSVFHSAVHGLKEFF 748 >UniRef50_A2E1B9 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2E1B9_TRIVA Length = 747 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 102/712 (14%), Positives = 223/712 (31%), Gaps = 86/712 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 + P + P Q ++ V + + + G + +E+PTG GKTLS L ++ ++ Sbjct: 8 VSIHFP-YKPYPLQETYMSKVIE--SCDTGNYAILESPTGTGKTLSLLCSVLSWRQQRNT 64 Query: 78 --TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 ++ S+ + + + LK+ + R Y+C Q Sbjct: 65 SSRIIYSSRTHSQLSNVIKE----LKRTKFQPTTSIIASRT-YLCLH---------DNIQ 110 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 + + L +++ + + ++ + DI D+ Sbjct: 111 KMESSLQSRFCRELRQKNQCIYDNESKIEQVSKKVINSLLDIDSFVDI------------ 158 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV-LPDPKNLLLVLDEGHHLP 254 C CPFFV++ ++ A+ +++ + + + ++ +++ DE H+ P Sbjct: 159 ---CRNEAVCPFFVSQFNVKTADFILSPYTYIADPISRSSLPSVVFNKSVVIFDEAHNFP 215 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 + + MS + + ++ + + + I + + + + + EL Sbjct: 216 EQCCEYFSMSVPFNK--FCVLRSFLSRQQSNVIGEVVTFGITSVELAKEFSNLVCDKLEL 273 Query: 315 IASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKT 374 + +E F + + + + +R L L Sbjct: 274 L-------------RKEIHQNFVLKNAKF-LFDFFSKCKIDYRTIRPFKRLLKAFLDNPV 319 Query: 375 GSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFH 434 + + + L + + F+ Sbjct: 320 LYCLSQNEQESLDLILQFFDF------------LYHENKRNESLIDNFYTISLSTDHCFN 367 Query: 435 CVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNH 494 ++ II+TS TL L +F+ G K + P Sbjct: 368 IYCFTPEKAFSEIVNLQPRTIILTSGTLAPLETFASY---FGYKFPIILENPHIAKP--- 421 Query: 495 CEQGKIVIPRMRV-----EPSIDNEEQHIAEM-AAFFRKQVESKKHLGMLVLFASGRAMQ 548 EQ ++ + N + ++ ++ S G LV F S ++ Sbjct: 422 -EQLLVICCGEGPFGNRLSFTYANRNDNQQKVELKSALSKLFSLSPNGSLVFFPSFSSLS 480 Query: 549 R--FLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDL 604 T ++ + + +V ++ E + L + +EG+D D Sbjct: 481 EFDVHSIDTKKKIFIEPRTFGDFSSIVSQFKENAVKEEGAALFAVCRGKMSEGIDFSDDY 540 Query: 605 LSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCW 664 V + I FP P VI ++ +S + + SA + Q +GR IR W Sbjct: 541 ARSVFVVGIPFPNTKDPKVILRKQFYESKKKGSGMKWYIDSAMRVVNQSIGRAIRHKDDW 600 Query: 665 GEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 VV+ D R +++ LP + ++K K +R Sbjct: 601 SVVVLIDNRYDG------MIELLPKWVKPSVITLNNWNVLEKKLKLFYEEKR 646 >UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B220_ENTCA Length = 832 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 114/691 (16%), Positives = 210/691 (30%), Gaps = 131/691 (18%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R QR++ A KTL + G+ L EAPTG GKT+S L P + + EE V Sbjct: 217 SFPFETFRKGQRELAAAAYKTL--KNGKRLFAEAPTGTGKTMSTLFPALKVLGEEGADRV 274 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + Q+ L L + K T +D + F Sbjct: 275 FYLTAKTITRQVAEDALSKLADNGSETKSVTI--------------------TAKDKICF 314 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD---KASCLNR 197 LD+ + C +G + I++ LW L + + Sbjct: 315 LDERNCTP-----EHCPYAQGYYNR-------------INEALWDLLHHENQITREVIET 356 Query: 198 NCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP--KNLLLVLDEGHHLPD 255 + CPF ++ +V++ ++ + + + ++DE H+L + Sbjct: 357 YGMKHTVCPFELSLDVSVFCDVIIGDYNYLFDPTVYLRRFFEEPDEEYFFLVDEAHNLVN 416 Query: 256 VARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELI 315 +++ + P + ++L ++L + Sbjct: 417 RSKEMYSATI---------------------------LRQPFKELKKKLPKDQQKLKRAL 449 Query: 316 ASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTG 375 ++ +E + P E + L LAEL L Sbjct: 450 NRVDKEFAALAQLAKEEGWSYHHQAAPHE---------TMVNQLYKLAELMKEWLPANPE 500 Query: 376 SHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHC 435 + ++ + N L + E + + + Sbjct: 501 HELQEEVLQVYFEANHYLKISEFYDDHY-----------------ETTVEIDRYDIKLRQ 543 Query: 436 VGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHC 495 I + L + ++ SA+ L S QE+ G L SPF+ Sbjct: 544 FCIEPAPFL-ESVLDKGKASLLFSASFTPL---SYYQEVLG--GGDEALRYRLPSPFDPK 597 Query: 496 EQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT 555 QG + ++ + E I + +Q+ + K +V F S R + + Sbjct: 598 NQGIFIA--DYIQTTYRQREASIPAIVDAI-QQMTAAKAGNYMVFFPSYRYLDDVAAAFS 654 Query: 556 DL--RLMLLVQGDQPRYRLVELHRKRVANG-------------------ERSVLVGL--Q 592 + +L+QG E + + + V + Sbjct: 655 QQAPEVEVLIQGTAMNEAEREAFLAQFQSFDSQQSSLLDKSQDEPKSQPKTLVAFCVLGG 714 Query: 593 SFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQ 652 F+EG+DLKGD L + + P I+ E+ F ++Q Sbjct: 715 IFSEGIDLKGDRLIGAAVVGVGLPQINHEQ-ELIREYYDEKKAAGFAYAYQLPGMNKVLQ 773 Query: 653 QVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 GR+IR G V++ D+R T Y + Sbjct: 774 AAGRVIRDVSDRGVVLLLDQRFRTPRYQELF 804 >UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL53_9FIRM Length = 794 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 116/695 (16%), Positives = 210/695 (30%), Gaps = 113/695 (16%) Query: 4 TAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLS 63 A + + L P RA QR +I V T +G L +APTG+GKT+S Sbjct: 177 AAQWRDDRQEGLRRLT--FPFPEYRAGQRALIKAVYGT--CRDGGQLLCQAPTGIGKTMS 232 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRN 123 L P + + ++ + + + R+ Sbjct: 233 VLFPALKALEKGGPIFYLTARGTT--------------RTAAETALAILRSHDADLSLRS 278 Query: 124 LTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 + T +D + + + C KG D K ++ + Sbjct: 279 V------TLTAKDKICLQETRECTPDA-----CPYAKGYYDRIKNALWNALDTPSLTAEG 327 Query: 184 WRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL 243 + L+ Y CPF + ++VV+ ++ + + A + + Sbjct: 328 LQHLAHQ-----------YEVCPFELGLDLSLWSDVVIGDYNYLFDPVVHLARFFESRGD 376 Query: 244 LL-VLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 L ++DE H+LP AR+ S ++ W + Sbjct: 377 YLFLIDEAHNLPSRAREMHSASLCKSSFW---------------------------DAKK 409 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 L + L + +N I + +E G+ + +R L L L Sbjct: 410 CLGSGKSSLKNALNKVNQIFISWRHRCEEESSDSRSGKTFF----VKERAELLDRALLKL 465 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 E N L E + + + + ++ + Sbjct: 466 CEPLENWLDEHRDPSETHD------------ALLQLYFDVRAWLRISDTFDDHFVLQIAS 513 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 E + + + + S L + ++ SATL N +++ GL E Sbjct: 514 HGSEVRAAM----LCLDPSAFLAND-FSKGRAAVLFSATLAPAN---YYKDLCGLPE--- 562 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 R VAL SPF + R V + I +++ ++ L F Sbjct: 563 ARAVALRSPFP-ARNLGLWCARH-VSTRYKDRSASIPQVSDLIACLAGART-GNYLAFFP 619 Query: 543 SGRAMQRFLDYVTDLRLML--LVQGDQPRYRLVELHRKRVANGER------SVLVGLQSF 594 S +Q L+ + L Q + +VL G+ F Sbjct: 620 SYSYLQSVLEDFSARYPNFSTLCQQSSMDEAQRTVFLSHFKPNPPQTQIGFAVLGGV--F 677 Query: 595 AEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQV 654 EG+DL GD L V I P + P + + F+ ++Q Sbjct: 678 GEGVDLTGDRLIGVAIVGPGLPQVG-PRQEQLRQHFEETCGSGFDYAYRYPGMNKVLQAA 736 Query: 655 GRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 GR+IR+ G V++ D R + + +P Sbjct: 737 GRVIRTPQDKGVVLLIDDRFASPENRRL----MPP 767 >UniRef50_Q8W4M7 DNA repair helicase UVH6 n=6 Tax=Eukaryota RepID=ERCC2_ARATH Length = 758 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 110/744 (14%), Positives = 226/744 (30%), Gaps = 70/744 (9%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + + P Q + + ++ + L + H +E PTG GKT++ L + Sbjct: 6 EDVTVYFPYDNIYPEQYEYMVELKRAL--DAKGHCLLEMPTGTGKTIALLSLITSYRLSR 63 Query: 76 QK---TLVVSTANVALQDQIYSKDL----PLLKKIIPDLKFTAA-FGRGRYVCPRNLTAL 127 LV T V ++ + ++ + K A + +C L Sbjct: 64 PDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNT-KVL 122 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 A+ D + +L + Y+ + Sbjct: 123 AAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVY------- 175 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLLV 246 L CP+F+AR IQ A V+V ++ ++ + + + K ++V Sbjct: 176 ---TLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVV 232 Query: 247 LDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNA 306 DE H++ +V +AL +S K+ A RL Sbjct: 233 FDEAHNIDNVCIEALSVSV--RRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVE 290 Query: 307 HC---------EELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 ++ A ++IL +P F + +L+ Sbjct: 291 GLALRGDLSGGDQWLANPALPHDILKEAVPGNIRRAEHFV--HVLRRLLQYLGVRLDTEN 348 Query: 358 MLRGLAELFLNDL------SEKTGSHDIVRLHRLILQMNRA-LGMFEAQSKLWRLASLAQ 410 + + F++ L +KT RL L+L + F + A+L Sbjct: 349 VEKESPVSFVSSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVG 408 Query: 411 SSGAPVTKWAT-REEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFS 469 + + +ER + + + + ++ +++TS TL ++ + Sbjct: 409 TYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYP 468 Query: 470 RLQEMSGLKEKAGDRFVALDSPFNH-----CEQGKIVIPRMRVEPSIDNEEQHIAEMAAF 524 RL + + ++ + D +Q + + + ++ + Sbjct: 469 RLLNFTPVVSRSFKMSMTRDCICPMVLTRGSDQLPV-----STKFDMRSDPGVVRNYGKL 523 Query: 525 FRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL----------MLLVQGDQPRYRLVE 574 + V S G++ F S M + + + + Q ++ Sbjct: 524 LVEMV-SIVPDGVVCFFVSYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALD 582 Query: 575 LHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKS 632 +R+ G +V + AEG+D V ++ + F S ++ E+L Sbjct: 583 NYRRACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHD 642 Query: 633 LNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPI 692 + A Q VGR+IRS +G ++ DKR LP + + Sbjct: 643 TFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYS----RHDKRSKLPGWIL 698 Query: 693 EQPEVPEGIVKKKEKTKSPRRRRR 716 + R R Sbjct: 699 SHLRDAHLNLSTDMAIHIAREFLR 722 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 128/710 (18%), Positives = 239/710 (33%), Gaps = 57/710 (8%) Query: 25 FIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTA 84 R Q +M+ V + L EG+ L +EAPTG GKT YL P + + + + + ++T Sbjct: 247 PTRRPAQEEMLRLVDEAL--REGKRLFLEAPTGTGKTKGYLYPALRLGK--DQRVWIATH 302 Query: 85 NVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE 144 LQ Q+ + L L + + +CP L L +D Sbjct: 303 TKVLQAQLLEE-LKGLARAGYAVSAALVKSSRDTLCPEALLELFLDARKSEDEELRAAVG 361 Query: 145 LTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRE 204 + L + L + + R C +++ Sbjct: 362 VLI-----------HYAALGESDLEALPAYWHFSRGFREAREHVGTNPRRCRPVCPFFQT 410 Query: 205 CPFFVARREIQEAEVVVANHALVMAAMESEAVLPD----------PKNLLLVLDEGHHLP 254 C + + A+++V N A ++A E L P + LV+DE HHL Sbjct: 411 CAYQKLLAHRKGAQILVTNQAYLLAHFLREEPLDAPEEEEAEPKTPPDPHLVVDEAHHLE 470 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERL----NAHCEE 310 DVA +AL ++L + + R ER Sbjct: 471 DVATEALTWVLNHEELTHKLNRLAHPSKESGLLRDSRRLKELSSGARERAKEVREELLHR 530 Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370 L E + + + + ++ + + + L RGL E Sbjct: 531 LRERLEGYTKRMVALVSQLGTGDPQYGLTLGLSPHWKRLEDWPYLDREERGLMEDLRELR 590 Query: 371 SEKTGSHDIVR--LHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQ 428 + R + R + + L R + + T+ + + Sbjct: 591 EALKTIAEDPRTLMARDLAPIGEYLRGALDLLHERRRVLFGKEALNSNLLHVTKLDPVTK 650 Query: 429 LHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSL-----NSFSRLQEMSGLKEKAGD 483 + + V+ L+ LW +++TSATL F+ L+++ G++ G Sbjct: 651 SWMHL-AQPVEVASDLKAGLWPRFQSVVLTSATLSVPTEKDPEGFALLKKVLGIEGAEGQ 709 Query: 484 RFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFAS 543 R L + + +++PR E + + + L LF S Sbjct: 710 R---LPPSLPYEK-AHLIVPRHLPEARESTLPRFQRMLHQELHTLLGHT--RRSLTLFTS 763 Query: 544 GRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGD 603 + ++ + +L + R + + + +G +S+ EG+D Sbjct: 764 LKRLEAAKKALEGHPHLLAPLTRREREDVAGRIKANPQEPVAA--LGSRSYMEGVDFP-- 819 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGC 663 L+ V++ +I F SP++ +W+ P+ LP ++ Q GRLIR Sbjct: 820 ALNLVNLERIPFELP-SPLLSRRMDWVYEQGLDPWWDYYLPKSALAFAQAFGRLIRDQRE 878 Query: 664 ---WGEVVIYDKRLLTKNYGKRLLDALPV-----FPIEQPEVPEGIVKKK 705 G V++DK+LL Y + LP FP+ + E + + + Sbjct: 879 GVGDGAFVLWDKKLLNAPYQEVFYRVLPPGVHRHFPLTRKEFYDRLAEIL 928 >UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67KS2_SYMTH Length = 656 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 137/699 (19%), Positives = 239/699 (34%), Gaps = 98/699 (14%) Query: 15 YKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIARE 74 Y L E F R Q +A+ L EG L EA G GKT +YL+P + AR Sbjct: 31 YDVLPEH--GFEVREEQIYTAFRIARALT--EGSTLLAEAGPGTGKTFAYLLPAVCHARM 86 Query: 75 EQKTLVVSTANVALQDQIY--SKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTALASTE 131 + +VV++A+ L+ Q+ D+ L +++ D+ A YVC + Sbjct: 87 RGRPVVVASASSVLKAQLTGPDGDIQTLSRLLNLDIDVRVAGNPADYVCEMKV------- 139 Query: 132 PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDK 191 + + EE + ++L G R + DDLW +S D Sbjct: 140 -----------EAGDFGSGEEPEGWSELI-HWARRTGTGARSEVP-GVPDDLWELVSWDP 186 Query: 192 A-SCLNRNCYYYRECP-FFVARREIQEAEVVVANHALVMAAMESEAVLPD-------PKN 242 + +C C C R+ A++VV +H L + + L + P Sbjct: 187 SLNC--DTCPRRGHCLMVAARRQHRAAADLVVCDHRLFAQDLLTRNDLLEGGMLPILPSY 244 Query: 243 LLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPE 302 ++ DEGHH P+ + A S L+ + + + + + Sbjct: 245 SAVIFDEGHHFPETWQRAQGWSLSQRRLRRTLERLEYWHAREQVAWRLEAALVAADSFMQ 304 Query: 303 RLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGL 362 L+ H E + EL +L+ RL + ++L+ Sbjct: 305 ALDVHTR-------------------PGEGKRDVDRSEL---LLKAAARLDQALDLLQTE 342 Query: 363 AELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATR 422 ++ ++ I ++ AL +F W Sbjct: 343 LVTEEAMSEGQSSETELQAYQNRIDELRAALRLFRR---------------PESVVWREG 387 Query: 423 EEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAG 482 +E V R L + ++ +SATL + GL Sbjct: 388 DE--------LWVVPRRPKPLFGGDLLKPGTPVVFSSATLEP----DYQARVLGLSRFDQ 435 Query: 483 DRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFA 542 R + PF+ Q + +P + +V L+L Sbjct: 436 SR---VGVPFDLGRQSLVYLPPDEGSGMNAAGPDAAVDAVVDEAVRVLHATGGRALILVR 492 Query: 543 SGRAMQRFLDYVTDLR--LMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL 600 S ++R+ + ++ +GD R +E R V SVLVG F EG+D+ Sbjct: 493 SLAEVRRWRQALAAHHLPWPVIYEGDGDRGAQLERFRAEVD----SVLVGAG-FWEGVDV 547 Query: 601 KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS 660 +G+ LS V + + FP P++ ++ + PF LP L Q +GRLIR+ Sbjct: 548 RGEALSCVILPYLPFPEH-DPLIRERRGQAQAAGQDPFRAVDLPEMLIKLKQGMGRLIRT 606 Query: 661 HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPE 699 G + + D+ ++ + +A P ++ E Sbjct: 607 AEDRGVIALLDRSYRGADWAGAVEEAFPEGARRVTDLAE 645 >UniRef50_B8DGR4 Helicase c2 domain protein n=17 Tax=Listeria RepID=B8DGR4_LISMH Length = 779 Score = 302 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 106/670 (15%), Positives = 206/670 (30%), Gaps = 107/670 (15%) Query: 22 IPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVV 81 P R+ QR++ V +T+A EE L EAPTG+GKT+S L P + E + + Sbjct: 182 FPYDNYRSGQRELAIAVYRTVASEES--LFCEAPTGIGKTMSTLFPSVKAMGEGKTDKLF 239 Query: 82 STANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFL 141 + Q+ L +++ + T +D + FL Sbjct: 240 YFTAKTITRQVAEDALDEMRRKGLAARSVTI--------------------TAKDKICFL 279 Query: 142 DDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYY 201 D+ + + R G D + A+ D L + + + Sbjct: 280 DERKCEPDHCQFAR--------------GYYDRLNEALFDMLQTEEAITRP-IVESYARK 324 Query: 202 YRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD--PKNLLLVLDEGHHLPDVARD 259 Y CPF ++ +V+V ++ + + P ++DE H+L D AR Sbjct: 325 YTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARS 384 Query: 260 ALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLN 319 + + + +++ L +K + +A+ ++L + +Y L Sbjct: 385 MYSATLK-KSLVMQVKRGLDSKKNKRLLNAINAMNKEMIALNKKLKDLEKTIYVQKDELG 443 Query: 320 NILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDI 379 + + A+ Sbjct: 444 DWNASVLKFTFVAKEWLPQN---------------------------------------- 463 Query: 380 VRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIR 439 Q + E + R ++A+ TR L + + Sbjct: 464 -------AQSESQADVLELYFESLRYVAIAEFYDDRYVTQVTRSH----GDLEIKQLCLD 512 Query: 440 VSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGK 499 + L L ++ SAT+R + + G +E + SPF + Sbjct: 513 PAFLLSEKLKLGSSSVLF-SATMRPI---DYYTNVLGGQEDTSR--MIFSSPF-KQKNMH 565 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL 559 +++ + E + + KK L F S +Q+ D + Sbjct: 566 LLVA-DYISTKYQMRENSMEAVVDALYALASGKK-GNYLFFFPSFLYLQKVYDLFKEKYP 623 Query: 560 MLLVQGDQ--PRYRLVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLSQVHIHKI 613 + Q + E + G LVG F+EG+DL+G+ L + + Sbjct: 624 NIRSQKQETAMDEEQREHFLENFQAGNEESLVGFCVLGGVFSEGVDLRGERLVGAAVVGV 683 Query: 614 AFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 ++ ++ F+ ++Q VGR+IR G V++ ++R Sbjct: 684 GLAQLNHE-SDLIKDYYNETIGRGFDYAYQIPGMNKVLQAVGRVIRGESDCGVVLLIEER 742 Query: 674 LLTKNYGKRL 683 Y Sbjct: 743 FSADRYRALF 752 >UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lactobacillus RepID=Q1WV23_LACS1 Length = 788 Score = 301 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 214/671 (31%), Gaps = 104/671 (15%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R Q + A V KT+A + L +EAPTG GKT+S + P + ++ + Sbjct: 184 DFPFSSYRKNQHEFAAAVYKTIALNKK--LLVEAPTGTGKTISTIFPAVKALGTKKCQKI 241 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 ++ + L LL K + + + P L P Sbjct: 242 FYLTAKQSTRKVAEETLQLLVKHGLSITAITLTSKEQITFPEELDLADDENP-------- 293 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + G D A+ D L + + Sbjct: 294 --------------------------YYLGYYDRLRPALIDILTNEKVITR-KIVENYAK 326 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNL--LLVLDEGHHLPDVAR 258 + PF + +VV+ ++ + + +N +LDE H+L +R Sbjct: 327 KHMLDPFEFSLDISNSCDVVICDYNYLFDPLVKLQRFFTERNYDYTFLLDEAHNLVSRSR 386 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 D ++ + +++ + PP I ++LN + +LI Sbjct: 387 DMYTKEIS-------------SQQIKDLLDKLQTLPHPPQKIVDKLNTLLNDF-DLIKE- 431 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 + + I ++LA LT+ + + + L+E Sbjct: 432 ------------------PLVNYQQADVIIEEKLASLTKKIMYFCDFTTDWLAENPHFSL 473 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L + + + + +R + L + Sbjct: 474 KDDLLEFFFAAYAFVKISDYYNNSFRTHLFITENSE----------------LLIRVFCL 517 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S+ + L ++ SATL LN QEM GL + + L SPF+ Sbjct: 518 DFSELIANSL-NLGGSAVLFSATLSPLN---YYQEMFGLIDNSLLY--QLSSPFDESNLN 571 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDL- 557 ++ + + +Q + ++ + + K L+ S +++ + Sbjct: 572 LLI--TSYIPVTYQQRQQSLGKIIDAIHTMI-ATKQGNYLIFLPSYTFLKQVVVAFNQAY 628 Query: 558 -RLMLLVQGDQPRYRLVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLSQVHIHK 612 + ++Q + E +LVG SF+EG+DLKG+ LS V I Sbjct: 629 PHIDTVIQENDMTREQQEDFLNYFVENPTKILVGFAVLGGSFSEGIDLKGNRLSGVAIVS 688 Query: 613 IAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDK 672 + P + + + + + F+ N+ Q GR+IRS G V++ D Sbjct: 689 VGLPKLSKETNELQS-YFNNKQKDGFQYAYQLPGLNNIFQAAGRVIRSSTDVGVVLLIDN 747 Query: 673 RLLTKNYGKRL 683 R T Y K Sbjct: 748 RFATSRYAKFF 758 >UniRef50_A2E4I6 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2E4I6_TRIVA Length = 880 Score = 301 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 109/741 (14%), Positives = 227/741 (30%), Gaps = 111/741 (14%) Query: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIA---- 72 + P P Q+ ++A L ++ + +E+PTG GKTLS L + Sbjct: 2 GIDVDFPFSTPYPAQKAIMAKTMVAL--KQSENALLESPTGTGKTLSLLASSLGYQTWLQ 59 Query: 73 ----------------------------REEQKTLVVSTANVALQDQIYSKDLPLLKKII 104 E Q + ++ Q+ S+ L Sbjct: 60 SQKPEPPKKIDPAALYGEKYTELDPETEEEPQLKVYYTSRTHNQLSQVVSELKRKLP--T 117 Query: 105 PDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLD 164 K R + +C + D+ A E + E + + Sbjct: 118 YRPKMAILASRQQ-LCIN------DNVRNKPDIDAACRLEHGTKHNCEFGKSMTIPR--- 167 Query: 165 TYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANH 224 + DG DI L C +CP+FV R + AE ++A + Sbjct: 168 SMMPDGEYSKYDI---------------ENLIDVCREEVKCPYFVTRNLAKRAEFILAPY 212 Query: 225 ALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQ-LDLFTKLV 283 ++ + + N +++ DEGH++ + RDA +S + Y + + Sbjct: 213 NYILDGRIRGTMKIELANSVVIFDEGHNIEGICRDAASLSLDYKEVSYIQGYIATLAQRE 272 Query: 284 ATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPD 343 ++ L+I + E I + + F + + Sbjct: 273 DMRLQIGNTLFQHFLSIGRLFDKIFEWFTRTIEE------SPWEQNRNRQETFFQYQDVE 326 Query: 344 EVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLW 403 +L + + + E ++ + TG D + + + + L Sbjct: 327 MILSGWTLNKERFVLYKEDMEEIISANEKTTGDQDSIIPTIVAAILGKTLTTLNFIYTND 386 Query: 404 RLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLR 463 + E+ + +++ + + ++ +I+TS TL Sbjct: 387 SICDFR-------LIITDYEKNKEEINPKLELLCMSPGVAFRSIV-AKTHSVIITSGTLS 438 Query: 464 SLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMR----VEPSIDNEEQHIA 519 L + + + + Q +I + + + + +I Sbjct: 439 PLTQYESELRTKFTHQLSAKHVID-------PSQVLSMIIQRMDGVELTSTAKSLNNNIY 491 Query: 520 EMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQ------------GDQ 567 + + K G+L+ F SG M++ L+ L+ +Q + Sbjct: 492 KKLGDIVLTIVQKVPDGILLFFPSGSTMRKCLEIWRSESLLYEIQKFKPVFNENSGNKKK 551 Query: 568 PRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVIT 625 + +R + G+ +L+ + +EG D V I I +P + +P +I Sbjct: 552 GEGDAFKEYRSSINKGKGGLLISVCRGRVSEGTDFADRQARCVIIFGIPYPSLYAPEIIL 611 Query: 626 EGEWLKSLNR--------YPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTK 677 + + + A L Q VGR IR +G +++ D R + + Sbjct: 612 KRNYNDDHAKQKNVEFATSDGSEWYSAQAFRALSQAVGRCIRHKDDYGSIIMIDSRFMQE 671 Query: 678 N--YGKRLLDALPVFPIEQPE 696 + + + D L PI Sbjct: 672 RSKFPRWMQDGLKRNPITSLS 692 >UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A7VIR7_9CLOT Length = 856 Score = 301 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 107/738 (14%), Positives = 242/738 (32%), Gaps = 136/738 (18%) Query: 1 MALTAALKAQIAAWYKALQE-QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVG 59 M + ++ E + P + R Q+QM A V K + GE L ++APTG+G Sbjct: 227 MKWIDHAISHARIRDASITELEFP-YEYRKGQKQMAACVYKAIEGERR--LFVQAPTGIG 283 Query: 60 KTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYV 119 KT++ + P + + + + + + L LL++ + + + Sbjct: 284 KTMAAMFPSVKAFATGLVSKIFYLTAKTIAGTVPDQALTLLREHGLKFSSVMLTAKEK-I 342 Query: 120 CPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAI 179 C + + + C KG D + Sbjct: 343 CLN------------------------ETMECDAEHCPYAKGHFDR-------------V 365 Query: 180 DDDLWRRLSTD---KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAV 236 + L+ ++ + + YR CPF + A+ ++ ++ V + Sbjct: 366 NAALFEMITQEERMDREVIRSYAEKYRVCPFELGLDASLFADTIIGDYNYVFDPRVNLKR 425 Query: 237 LP-----DPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFR 291 D + ++DE H+L D A + + + L + Sbjct: 426 FFSQTAYDTGRYVFLVDEAHNLVDRASSMYSAT--LYKEDFLAVKKLVKPYSKKLVRGLE 483 Query: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 L + +R H ++ +G L ++L++ Sbjct: 484 SCNRELLELKKRCPEHGYQIL-----------------------NDIGVLYLKLLQLHTT 520 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 + E + + E + E L ++A Sbjct: 521 METFLEDYKQIPERK---------------------------EILEFYFALTTFLNIADL 553 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 + +G+ + +C + ++ L +L + SAT+ + + + Sbjct: 554 IDDSYVIYDEL-TSDGRFMVRLYC--VHPANNL-KLCLDKGVSTVFFSATILPVKYYMEM 609 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 L + D+ + + SPF+ ++ +V + + + + +++ + A + + + Sbjct: 610 -----LSDTDTDQAIYIPSPFDQKKRQIMVGVDVSTKYTRRSVKEY--KRVAEYIRHLFK 662 Query: 532 KKHLGMLVLFASGRAMQRFLDYVTDLR---LMLLVQGDQPRYRLVELHRKRVANGERSVL 588 +V S + ++ + +T + LL Q + E + ++ + V Sbjct: 663 VHPGNYMVFLPSYKMLREVYEQMTAEDCSVMELLCQEQNMKEADREAFLEHFSSQKNVVA 722 Query: 589 VGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR---------YP 637 + F+EG+DL GD L + P + + ++ + R Sbjct: 723 FCIMGGIFSEGIDLTGDRLIGSVVVGPGLPQVCNER-KIMMDYFNTGKRTDTNADSSVDG 781 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEV 697 F+ L + Q GR+IR+ G +++ D+R T Y ++L FP+E + Sbjct: 782 FKYAYLYPGINKVFQSAGRVIRTEDDTGVILLLDERFGTGEY-----NSL--FPVEWQDA 834 Query: 698 PEG-IVKKKEKTKSPRRR 714 G + +K ++ +R Sbjct: 835 VFGNFDRLAQKVENFWKR 852 >UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=A6M309_CLOB8 Length = 761 Score = 301 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 109/672 (16%), Positives = 219/672 (32%), Gaps = 113/672 (16%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R QR++I +T+ EE L ++APTG+GKT+S + P + E + Sbjct: 188 NFPFEKYREGQRKLINVSYQTIKEEE--ILFVQAPTGIGKTISTIFPAVKAISEGIGEKI 245 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + + ++ + L++ + + + + +D Sbjct: 246 IYLTAKTINREVAEETFERLRQEGLKFRTITITAKEKTCINDDFDCNPEKCIYAKDYYGK 305 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 + +T + E R+ST L Sbjct: 306 VKKVITNVIERE--------------------------------ERIST---EILKEYAE 330 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDA 260 Y+ CPF ++ + ++ ++ + S + + + K ++++DE H+L D +R+ Sbjct: 331 KYQVCPFELSLDISTYCDGIIGDYNYIFDPRVSLSRVLESKGNIVLVDEAHNLIDRSRNM 390 Query: 261 LEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNN 320 S + C + + K ++ ++N + Sbjct: 391 YSASLYKSQIL-------------NCKKITKGKLNKLHSLLGKINDY------------- 424 Query: 321 ILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIV 380 +NL F E P E+ + Q K +E + F G DI+ Sbjct: 425 FINLRNECDHREVKSFYEEEHPKELSKYLQLYLKESEEVLVRGNRF-------DGYEDIL 477 Query: 381 RLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRV 440 +L + S Q ++ +E + + Sbjct: 478 KL----------------YFDMNAFTSTTQLYDENYRTCIEKDSQE----IKLTLYCVNP 517 Query: 441 SDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI 500 + L L +I SAT+ + M G + + L SPFN E K+ Sbjct: 518 AKNLREYL-GKCYSVIFFSATISPIK---YYVNMLGGDDNTYR--LKLPSPFN-KENLKV 570 Query: 501 VIPRMRVEPSIDNE--EQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR 558 I + + S ++ F ++Q+ ++ S M+ ++ + + Sbjct: 571 HISPINIRYSYRKRTLSSVKDKICGFIKQQI-----GNYMIFSPSYAYMEELYSHMEESK 625 Query: 559 LM---LLVQGDQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKI 613 L L+ Q +R N ++ + F+EG+DL GD L I + Sbjct: 626 LEEFNLMKQKPNMTEEEKSEFLRRFKNSNNLLMFCVLGGMFSEGIDLPGDQLIGSIIIGV 685 Query: 614 AFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKR 673 +P + ++ K ++ + + Q VGR+IR+ G V++ D R Sbjct: 686 GYPMV-DMTNEVIKDFYKE---DGYDYAYVFPGINKIQQAVGRVIRTETDKGRVLLIDDR 741 Query: 674 LLTKNYGKRLLD 685 + Y L + Sbjct: 742 YINNKYSVLLPN 753 >UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_ALKMQ Length = 657 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 136/700 (19%), Positives = 259/700 (37%), Gaps = 94/700 (13%) Query: 5 AALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSY 64 A ++ Y L E + R Q +A + + + EA G GKT +Y Sbjct: 22 AEWIGEVF--YDILPEH--GYEVREEQIFTAFQLADAVCNK--KVHLAEAGLGTGKTFAY 75 Query: 65 LIPGIAIAREEQKTLVVSTANVALQDQIY--SKDLPLLKKIIP-DLKFTAAFGRGRYVCP 121 L+ IA AR K +V++ A+ ALQ+Q+ D+ L I+ ++ A +Y+C Sbjct: 76 LLTAIAYARFSGKPVVIACASTALQEQLAGPKGDIQTLSDILGLEIDARMAKDPRQYICD 135 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 + F + +N+ Q +G+ + D Sbjct: 136 ARVDESRG---------LFTEKSNAMSNEINQWLAKTNRGERSEMPL----------VPD 176 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEA-EVVVANHALVMAAM-------ES 233 +W+++ D++ C C AR + A ++++A+H + + + Sbjct: 177 RVWKQIGWDESM-SCDMCSSRGFCKLVKAREHYRPARDLIIADHEVFFDDLWTRDEQIDG 235 Query: 234 EAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPK 293 P ++ DEGH + +++ ++ Sbjct: 236 GKSPILPSYSAVIFDEGH-----------------KVMLPAAMRAGKQIIKEDIDNIILS 278 Query: 294 TIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRF--AMGELPDEVLEICQR 351 + L + +L + + LN + A + ++ +L + Sbjct: 279 LEEIQGARDSLISIAVDLEQTSSDFFIKLNRCVIADEPSDRLALRVDDKLFKAADTFYKD 338 Query: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 L +L ++ EL+ L ++ R ++ ++R ++ Sbjct: 339 LDRLLFEIQVEQELYTESLPASLLHTYETQIERSMMALDRF----------------CRN 382 Query: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 V W Q+ F V +S L+ L++ ++ TSATL + FS Sbjct: 383 KSRDVITWV------DQMDGSFWVVPRELSKMLDIHLFQKGLPVVFTSATLSNEGDFSYF 436 Query: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 GLK+ + ++SPF+ EQ + +PS ++ E + + Sbjct: 437 TRTLGLKKTSCS---TVESPFDIEEQVVV----HLPQPSSNSHEDIGFSLGIEGLVSLLK 489 Query: 532 KKHLGMLVLFASGRAMQRFLDYVTDLRLM--LLVQGDQPRYRLVELHRKRVANGERSVLV 589 G LVL +S +++ D +L +L + R LV R+ V+ SVL+ Sbjct: 490 LNGGGALVLTSSLDEVRKIRKGFKDYQLPFEVLWEDKGERGYLVRKFREEVS----SVLI 545 Query: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 G SF EG+D+ G+ LS V + ++ FP + P++ + E K P P Sbjct: 546 GT-SFWEGIDIPGEALSLVVVWQLPFPSL-DPLIEVQREEAKKEGLDPKVTVDYPEMGLK 603 Query: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPV 689 L Q GRLIR+ G +VI + ++ + + + ++ ALP Sbjct: 604 LKQGCGRLIRTKDDRGAIVIMES-IIGEPWEEVVMGALPP 642 >UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C6D1G2_PAESJ Length = 773 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 126/683 (18%), Positives = 222/683 (32%), Gaps = 118/683 (17%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P RA QR++ A +T+A +GR L +APTG+GKT+S L P + EE+ + Sbjct: 185 AFPFSSYRAGQRKLAASAYQTIA--DGRKLFAKAPTGIGKTMSTLFPAVKAIGEERLERL 242 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + L +L L + + + Sbjct: 243 FYLTARTTTRTAAEEALKMLGDGGLHLHAVTLTAKEK--------------------VCL 282 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 D+ E + G D + AI D L S + + R Y Sbjct: 283 KDEVRCSPEYCEFAK--------------GYYDRINGAILDMLGNEASMTR-EVIERYAY 327 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPD--PKNLLLVLDEGHHLPDVAR 258 + CPF + A+ V+ ++ + + L + + L++DE H+L D AR Sbjct: 328 KHHVCPFEFSLDAAYAADAVICDYNYIFDPRVNLKRLFEEQKRKTALLVDEAHNLVDRAR 387 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 + L + + L+ Sbjct: 388 EMYSAELRKADFL-------------------------------ELQRASKTIRPLVYQS 416 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 +N Y A +++ + +L E L L + L++ Sbjct: 417 AKAVNQYFIALRKSIEESGKEATGTNMERYL--PEQLIEQLETLVQAAEEQLAQGDQDPL 474 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 + + +A+ +A +E + + + Sbjct: 475 L----------------LDVYFGCQHFLRIAKLYDERYVTYAEKERND----VRMKLFCL 514 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L + + I+ SATL L+ +M G + D VA+ SPF+ EQ Sbjct: 515 DPSYLLRQ-YAKGYKAQILFSATLSPLH---YFMDMLG-GDAETDYAVAIPSPFS-SEQL 568 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLR 558 + I ++ + E+ + +A R VE + +LV F S + + +L Sbjct: 569 DVRIEKL--STRYQDRERTMDRVAGLLRSTVERHQ-GNILVFFPSYAYLNGVYERFMELP 625 Query: 559 L--------MLLVQGDQPRYRLVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLS 606 L +VQ + A + LVG F+EG+DL GD L+ Sbjct: 626 LSEEESATFTAMVQRPNMPEEERDAFLAAFAPDNNNTLVGFAVMGGIFSEGIDLVGDRLT 685 Query: 607 QVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGE 666 V + + P + I + ++ + FE + ++Q GRLIRS G Sbjct: 686 GVAVVGVGLPQVGLERNIIK-DYFDRQGKNGFEYAYVFPGMNKVLQAGGRLIRSESDRGM 744 Query: 667 VVIYDKRLLTKNYGKRLLDALPV 689 +++ D R Y + LP Sbjct: 745 LLLIDDRYAHPQYARL----LPP 763 >UniRef50_A0DE87 Chromosome undetermined scaffold_47, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0DE87_PARTE Length = 913 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 104/738 (14%), Positives = 225/738 (30%), Gaps = 94/738 (12%) Query: 19 QEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKT 78 + P P Q + + V + L ++ + +E+PTG GKTLS L + + +K Sbjct: 43 EIYFPH-KPYDVQVKYMESVVQIL--DKKCNGLLESPTGTGKTLSLLCSTMGWLHKHRKE 99 Query: 79 -----------LVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTAL 127 ++ ++ A Q+ + LK+ + + R +Y C + + L Sbjct: 100 QQKSGASSNLKIIYASRTHAQLKQVAQE----LKRTVYAPNISMVGSRDQY-CLLDFSNL 154 Query: 128 ASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRL 187 + C +L ++ A + L L Sbjct: 155 KGNA--------------------LIQACRRLVKRNKCQFYNKDSLPNIAAQNSKLINTL 194 Query: 188 STDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVL 247 + + CP++ R + A++++ + ++ S + + +N +++ Sbjct: 195 -----EESKQFGHNNNVCPYYFERERLTNADLILLPYNYLLDREFSN--IVNTENSIIIF 247 Query: 248 DEGHHLPDVARDALEMSAEIT-----APWYRLQLDLFTKL---VATCMEQFRPKTIPPLA 299 DE H++P A + T L ++ + + K + L+ Sbjct: 248 DEAHNVPSAAENGQSFFINETIVQEAKKELERWLKELYEMPDFFSGFQQVLNQKKLSSLS 307 Query: 300 I--PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTE 357 + E + + +L + F ++ + + E K Sbjct: 308 LREYEDIVQTIGAFSIFLQNLQGASYFDPQQTNDQCKVFDAEQIFNFLYENTSINKKNGG 367 Query: 358 ML---------RGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASL 408 + L F + + + ++ L Sbjct: 368 TIFSNGINGDNISLYISFCVAIITYMSETSPHDGSNFHSWIRFVINLYNLDEFDDYLDDD 427 Query: 409 AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSF 468 Q K A + Q + + + S ++L +I II TS TL + S+ Sbjct: 428 EQLQYFDFYKLAII--KNIQNQISLNMWCLDPSLAFKKLKLNNICSIIFTSGTLAPMESW 485 Query: 469 SRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIV-IPRMRVEPSIDNEEQHIAEMAAFFRK 527 +M + + + + + E I + Sbjct: 486 QSELQMEFKIQLSNKHVI------DIANNVRAFQHLSFDFSYQKRENEDQIINLGLAILN 539 Query: 528 QVESKKHLGMLVLFASGRAMQRFLDYVTDLRLM----------LLVQGDQPRYRLVELHR 577 + K ++V F+S MQ + +L+ QG + +E+ + Sbjct: 540 FSKVIKGGIIIV-FSSYGLMQNIRRRWANQQLIQRLNEVKKCLWEEQGSAQFHNTLEVFK 598 Query: 578 KRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSL-- 633 + + ++L + EG+DL DL V + I +PP+ + + ++L Sbjct: 599 Q--NGQKGAILFAVHRGKVTEGIDLSDDLCRAVFLIGIPYPPLKDQKIKLKKQFLDQQLA 656 Query: 634 ---NRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVF 690 + + A Q +GR+IR +G + D+R L N L + Sbjct: 657 KNRQGLTSKDWYMQQAVRATNQAIGRVIRHINDYGVIFFCDRRFLWSNMKNSLSKWVQPA 716 Query: 691 PIEQPEVPEGIVKKKEKT 708 + + K Sbjct: 717 IQSWKNDEDVLFNLKNFF 734 >UniRef50_C1DZL6 Predicted protein n=4 Tax=Eukaryota RepID=C1DZL6_9CHLO Length = 797 Score = 299 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 115/753 (15%), Positives = 235/753 (31%), Gaps = 78/753 (10%) Query: 16 KALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREE 75 + L P Q + + ++ + L + H +E PTG GKT++ L + + Sbjct: 6 EGLTVYFPYEYLYPEQYRYMLELKRAL--DAKGHGCLEMPTGTGKTITCLSLITSYQLQN 63 Query: 76 --QKTLVVSTANVALQDQIYSKDLPL---LKKIIPDLKFTAAFG--RGRYVCPRNLTALA 128 L+ T V +++ ++ L +K + A G + +C Sbjct: 64 PECGKLIYCTRTVPEMEKVLAELRNLQAYREKHVGKASQIMALGLSSRKNMCIHP-KVAD 122 Query: 129 STEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS 188 D ++ + + + + + + + + Sbjct: 123 EGSRESVDANCRRLTASWVRDKHMAALANEEEAPENAPELCEFFEDYEKEGPNAILPP-G 181 Query: 189 TDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK-NLLLVL 247 + L CP+F+AR I A VVV N+ ++ + V + + ++V Sbjct: 182 VYTLADLRDFGRKKGWCPYFLARHMISFANVVVYNYQYLLDPKVANMVSRELERECVVVF 241 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H++ +V +AL ++ + LD ++ +A ++ +RL Sbjct: 242 DEAHNIDNVCIEALSVNLR------QQTLDGASRNIAQLTQRIEHVKAHDE---QRLREE 292 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 L +A +L+ A + L + V +R LR E Sbjct: 293 YTRLVNGLAQ-QGVLDRARSDQLIANPVISEDILREAVPGNIRRAEHFIAFLRRFVEYLK 351 Query: 368 NDLS----------------EKTGSHDIVRLHRLILQMNRALGMFEAQSK--------LW 403 + ++T + D L ++ L E + Sbjct: 352 QRMRGGSVEQETPIAFLAHLQQTAAIDGKTLKFCYDRITSLLKTLEVVDTEDFSAISLIC 411 Query: 404 RLASLAQSSGAPVTKWATREEREGQL--HLWFHCVGIRVSDQLERLLWRSIPHIIVTSAT 461 A+L + + F + S + ++ + +TS T Sbjct: 412 DFATLVGTYEKGFALILEPYDERYPNIPDPVFQLTCLDASYAIA-PVFDKFNSVFITSGT 470 Query: 462 LRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMR------VEPSIDNEE 515 L +N + ++ G K ALD +VI R + + ++ Sbjct: 471 LSPINLYP---QLLGFKPVCSA---ALDMTLTRECLCPMVITRGADQQMVSTKFDMRDDP 524 Query: 516 QHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRL----------MLLVQG 565 I + S G++ F S M++ + + + L Q Sbjct: 525 GVIQNYGRVLID-LCSCVPDGIVAFFVSYSYMEQIISKWHETGVLQQVMRRKLVFLETQD 583 Query: 566 DQPRYRLVELHRKRVANGERSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVV 623 ++ +R+ G +V + + AEG+D V ++ + + S ++ Sbjct: 584 VVETSLALDNYRRACNCGRGAVFLSVARGKIAEGIDFDRHYGRAVIMYGVPYQYTLSRIL 643 Query: 624 ITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRL 683 E+L+ + A Q VGR+IRS +G +V DKR + Sbjct: 644 RARLEYLRETFQIKEADFLSFDAVRQAAQCVGRVIRSKADYGLMVFCDKRYNS----HDK 699 Query: 684 LDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR 716 LP + + + R+ R Sbjct: 700 RGKLPKWITSHLHEQQLNLSTDMAVAIARQFMR 732 >UniRef50_C4M6T8 DNA repair helicase, putative n=2 Tax=Entamoeba RepID=C4M6T8_ENTHI Length = 1033 Score = 299 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 119/735 (16%), Positives = 254/735 (34%), Gaps = 89/735 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L + P + P PQ +M+ + + + +EG+HL +E+PTG GKTL L + Sbjct: 82 LAQSFP-YQPYQPQIEMMNSIQQAV--KEGKHLLMESPTGTGKTLVLLHSTLTF---PDM 135 Query: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDL 137 +V ++ Q+ ++ K I ++K R Y C N + Sbjct: 136 RVVYASRTHNQLAQVVNET-----KKIGNIKGIVLASRDLY-CIYNPIKTCDDKNYWCTA 189 Query: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLS--TDKASCL 195 L +L N + DG + +++ L+ L Sbjct: 190 KPNLLLKLKHINPCPYRPFGD----------DGKILPHVVMACQAVYKELNGIIIPQEEL 239 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP--------KNLLLVL 247 + C + CP++ AR +++++ + V + + + +LV+ Sbjct: 240 VKVCQKHNLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFVLVM 299 Query: 248 DEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAH 307 DE H++ D D +T + L+ + + ++ + L I + Sbjct: 300 DEAHNVEDAFMD------SLTFNFTESLLNQTIETIQFHKKRIKQTPENLLTI-----SL 348 Query: 308 CEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 EL + S + + +++EH L +R + +L ++E Sbjct: 349 LTELISTVESFSIWMKNRSLPYKDSEHYLYGVFEDQAFLPFVERSPSSSRLLEAISEYI- 407 Query: 368 NDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREG 427 + + D + + + R + F Q L + +TK+ + Sbjct: 408 ----KVVDNLDDLDIFTREPHVIRYINSFTTQYIEMILFYIQVFRTPTLTKFFKIVITDY 463 Query: 428 QLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVA 487 + S + LL + +I S TL + + + + +KE F+ Sbjct: 464 NGLREMLFRCLSPSLPMS-LLQIVVRSVIFASGTLSPMKA---MAQELDIKEHVYKDFII 519 Query: 488 LDSPFNHCEQGKIVIP---------------RMRVEPSIDNEEQHIAEMAAFFRKQVESK 532 SP + V+P + + +++ + E A +V SK Sbjct: 520 --SPGYRMLSTEHVVPPSRVFGRIIISSSLGKSFIFTKKTSQDNEMIEQAGDTMFRVLSK 577 Query: 533 KHLGMLVLFASGRAMQRFLDYVTDLRLM--------LLVQGDQPRYRLVELHRKRVANGE 584 G LV F+S + R ++ + + ++ + ++ + + Sbjct: 578 SPGGALVFFSSYNMLNRIVELWKQHGIYTQLNKLKAIFIESKDKSEFKKDFKEYQIQSKK 637 Query: 585 RSVLVGL--QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLN-RYP---- 637 +V +G+ +EG+D D+ V + I +P + V + E+ N + P Sbjct: 638 GAVFLGVFRGKLSEGIDFGDDMARLVIVVGIPYPSLGDINVNLKREYNSHENLKNPDCLS 697 Query: 638 FEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIE---- 693 A + Q VGR+IR +G +++DKR T + + L + + Sbjct: 698 GSEWYSIQALRAVNQAVGRVIRHINDYGAFLLFDKRYSTNSVKEMLSGWMKKSLVVADKN 757 Query: 694 -QPEVPEGIVKKKEK 707 + ++ + + + Sbjct: 758 WEQDLQDFFTQFSQF 772 >UniRef50_C1FYI3 DNA repair helicase RAD3 n=2 Tax=Onygenales RepID=C1FYI3_PARBD Length = 791 Score = 299 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 114/725 (15%), Positives = 227/725 (31%), Gaps = 93/725 (12%) Query: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 L P Q + D+ KTL + G H +E P+G GKT+S L IA + Sbjct: 56 LPVLFPYPRIYPEQYAYMCDLKKTL--DTGGHCVLEMPSGTGKTVSLLSLIIAYQQH--- 110 Query: 78 TLVVSTANVALQDQIYS--KDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 Q ++ + + ++K + +LK R + + Sbjct: 111 --------KPEQRKLIYCSRTMSEIEKALAELK-ALMKYRAQQL---------------- 145 Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 E R L + ++ I D R L+ Sbjct: 146 -------------GYTEDFRGLGLTSRKNLCLHPSVKREKSGTIVDARCRSLTAGFVKEK 192 Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP-KNLLLVLDEGHHLP 254 C + E+ V++ ++ ++ +E V + K+ ++V DE H++ Sbjct: 193 KERGEDVELCIYH----EMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 248 Query: 255 DVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYEL 314 +V + +S ++T R L E ++L E E Sbjct: 249 NVCIE--SLSIDLTEDSLRKASRGANNLERRIDEMKSSDAEKLQNEYQKLVEGLREADEA 306 Query: 315 IASLNNILNLYMPA-------GQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFL 367 + N +P +E + K+T + FL Sbjct: 307 RQEEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL 366 Query: 368 NDL------SEKTGSHDIVRLHRLILQMNRA-LGMFEAQSKLWRLASLAQSSGAPVTKWA 420 L K RL L+ + L ++ ++ A+LA + Sbjct: 367 AHLKDLTFIERKPLRFCAERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLIL 426 Query: 421 TREEREGQL--HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLK 478 E + + H + + + + ++ +I+TS TL L + ++ + + Sbjct: 427 EPFESDTATVPNPILHFTCLDAAIAI-KPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVL 485 Query: 479 EKAGDRFVALDSPFNH-----CEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKK 533 +++ +A S +Q +I I N+ + + Sbjct: 486 QESYSMTLARRSFLPMIVTRGSDQAQI-----SSSFQIRNDPGVVRNYGNLLLEF-SRIT 539 Query: 534 HLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGL-- 591 G++V F S M+ + + Q +E +R NG ++L+ + Sbjct: 540 PDGIVVFFPSYLYMESIISMWQ-----VETPDSQESSLALETYRTACCNGRGAILLCVAR 594 Query: 592 QSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLI 651 +EG+D V + F +S ++ E+L+ R A + Sbjct: 595 GKVSEGIDFDHHYGRTVICIGVPFQYTESRILKARLEFLRENYRIRENDFLSFDAMRHAA 654 Query: 652 QQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSP 711 Q +GR++R +G +V+ D+R K LP + + E + + Sbjct: 655 QCLGRVLRGKDDYGVMVLADRRFQKKR------AQLPKWISQAMLESETNLSTDMAMATA 708 Query: 712 RRRRR 716 + R Sbjct: 709 KSFLR 713 >UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2NCB3_ERYLH Length = 916 Score = 299 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 142/752 (18%), Positives = 240/752 (31%), Gaps = 91/752 (12%) Query: 8 KAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGR----HLAIEAPTGVGKTLS 63 +A++ A L + R QR DV A E R L +A TG+GKTL Sbjct: 180 EAEVEAQLARLTGE--GAEKRDGQRAYAKDVGGVFAPREKRKQPHVLLAQAGTGIGKTLG 237 Query: 64 YLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPL--LKKIIPDLKFTAAFGRGRYVCP 121 YL P A + Q T+ VST LQ Q+ + ++ GR Y+C Sbjct: 238 YLAPASLWADKAQGTVWVSTYTKNLQRQLRGESRRAWPSRRADGSRPVVVRKGRENYLCL 297 Query: 122 RNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDD 181 NL F + GD+ G Sbjct: 298 LNLEDALQGG--------FAGRPAVLAQLVARWAAYSADGDMIGGDLPG---WLGTLFRK 346 Query: 182 DLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK 241 L+ + C+ C +YR+C A R +A++V+ANHALVM P Sbjct: 347 RGITALTDQRGECIYAGCPHYRKCFIERATRASAQADLVIANHALVMINAARGRHHGQPP 406 Query: 242 NLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK-------------------- 281 +L DEGHH+ D A + + + + Sbjct: 407 TRIL-FDEGHHVFDAADSTFAAALTGQEAIELRRWIIGPEKGNRGRRRGLAARLADVASY 465 Query: 282 ----LVATCMEQFRPKTIPPLAIPERLNAH-----CEELYELIASLNNILNLYMPAGQEA 332 A + +P RL E L + +L + Sbjct: 466 DDAGGEAVEAAVEAAQNLPSDGWIARLVEGTPFGPVEALLGQVRALTYARDESGAQDAGY 525 Query: 333 EHRFAMGELPDEVLEICQRLAKLTEMLR-------GLAELFLNDLSEKTGSHDIVRLHRL 385 + LP ++E Q +R G E L D + R+ Sbjct: 526 GIETEVASLPGPLIEAAQDAQVALAAIRSPLMTLGGRLEAVLEDAPDWLDGQGRARIEGA 585 Query: 386 ILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQ-LHLWFHCVGIRVSDQL 444 + + + A L LA L + W + E + + H + Sbjct: 586 RHSLRWRIDLLAAWESL--LARLGGPADPDFVDWFAVDRNEAREFDIGIHRHWLDPMKPF 643 Query: 445 ERLLWRSIPHIIVTSATLR----SLNSFSRLQEMSGLKE-KAGDRFVALDSPFNHCEQGK 499 ++ +++TSATL + + SG + + + SPF++ + + Sbjct: 644 AHVVLEPAHGVMLTSATLTDRGETGEDWQGAIAASGAPHIELQPKTSSAQSPFDYASRAE 703 Query: 500 IVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFL----DYVT 555 ++I +A +A + + VE+ G+L LF + + ++ D + Sbjct: 704 VLIVTDIKRGD-------LAALAGGYARIVEAA-GGGVLGLFTAIKRLRAVYGRIADRLA 755 Query: 556 DLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAF 615 L L Q P + ++ L+G + +G+D+ G+ L V + + + Sbjct: 756 RAGLPLYAQHVDPIDTG--TLTDIFRDDRKASLLGTDALRDGVDVPGESLRCVVLEAVPW 813 Query: 616 PPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLL 675 P + N L A L Q GRLIRS G ++ Sbjct: 814 PRPT-ILHRARRAA----NGGGAYDDRLIRA--RLAQAFGRLIRSREDAGHFIVL----- 861 Query: 676 TKNYGKRLLDALPV-FPIEQPEVPEGIVKKKE 706 + + RLL A P P+ + + + + Sbjct: 862 SSAFPSRLLSAFPPGTPVTRLTLDGALERVAA 893 >UniRef50_Q4T770 Chromosome undetermined SCAF8259, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4T770_TETNG Length = 1212 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 119/849 (14%), Positives = 249/849 (29%), Gaps = 191/849 (22%) Query: 14 WYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR 73 + Q P F P A QR+ + V + L E+ + +E+PTG GKTL L +A Sbjct: 5 ALDGVTVQFP-FAPYACQREYMRKVIECL--EQKTNGVLESPTGTGKTLCLLCSALAWRE 61 Query: 74 EEQ----------------------------------------KTLVVSTANVALQDQIY 93 + + ++ ++ + Q+ Sbjct: 62 QLKDKISSKMMERRLGGETSHSTGLASWGSAAADGEAAYYTDIPKIIYASRTHSQLAQVI 121 Query: 94 SKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQ 153 + LK K R + +C + ++ ++ Sbjct: 122 KE----LKNTAYRPKICVLGSREQ-LCINPEVMRQES----------SHVKVHMCRKKVS 166 Query: 154 KRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARRE 213 R + + D H+ + ++D L + R CP++++R Sbjct: 167 TRSCPFYNNTEESSTDRDLTHSILDVED-------------LVKFGNKKRVCPYYLSRSL 213 Query: 214 IQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYR 273 QEA+V+ + ++ A + +++ DE H+L + S ++T Sbjct: 214 KQEADVIFMPYNYLVDPKSRRAHNIELNGAVVIFDEAHNLEKTCEE--STSFDLTPYEVA 271 Query: 274 LQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAE 333 + +L+ +EQ + + + E+ + + + ++ G Sbjct: 272 SAIAAVDRLL---VEQVKATGAGGTLAEDGSLDYDSEILLDLEAAIDSFDVSSEKGLTKP 328 Query: 334 HRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLIL------ 387 F L L Q A++ E L ++ S I +L +I Sbjct: 329 GMFIYELLQRAHLTY-QSKAEVYEALEQISGYLAAQPGIFLQSGGIQKLADIIQLVFCGD 387 Query: 388 ----QMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQ 443 + + F+ + + + ++ + L + C Sbjct: 388 PSEKDVRSSAAHFKVHIHQDTSHNRKKQTADIWASSSSSSSSKAGNILSYWC--FSPGFS 445 Query: 444 LERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFV----------------- 486 ++ L+ + + +I+TS TL L+SF+ + + Sbjct: 446 MQDLVNQGVRCVILTSGTLSPLDSFTSEMRIDFPVRLENGHVIERDQIFVSVVDRGPDGV 505 Query: 487 ALDSPFNHCEQGKIVIPRMRVEPSIDNE-------------EQHIAEMAAFFRKQVESKK 533 L S F+ + ++ P M + +++A + Sbjct: 506 QLSSAFD---RRFLLHPDMLHLTGSQAQLRSLSLFFCGRFLPENMASLGNTVANLSRVVP 562 Query: 534 HLGMLVLFASGRAMQRFLDYVTDLR-----------------------------LMLLVQ 564 H G+LV F S M++ LD+ + V+ Sbjct: 563 H-GLLVFFPSFPLMEKVLDFWRVSGDGGSPASWCESSSPLAPQAHGHAERIDALKPIFVE 621 Query: 565 GDQ-----------------PRYRLVELHRKRVAN--GERSVLVGL--QSFAEGLDLKGD 603 ++++ + +V + + + +EGLD Sbjct: 622 PKGKANFSEASGRAETDSLFSISQVMDGYYNKVNDPQTKGGSFFAVCRGKASEGLDFADA 681 Query: 604 LLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRY------------------PFEVQSLPS 645 V I + FPP P VI + ++L +N + Sbjct: 682 FGRAVVITGLPFPPRMDPRVILKMQFLDEMNASKTSKMKPAVAFRVLVQFLSGQQWYRQQ 741 Query: 646 ASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKK 705 A + Q VGR+IR +G + + D R +L L I Sbjct: 742 AFRAVNQAVGRVIRHRHDFGAIFLCDHRFKNPEARAQLPSWLKPCVHLCDSFGSVIRDVS 801 Query: 706 EKTKSPRRR 714 + + ++R Sbjct: 802 KFFRVAQKR 810 >UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBF9_9GAMM Length = 804 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 118/702 (16%), Positives = 220/702 (31%), Gaps = 112/702 (15%) Query: 21 QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80 P R QR + +A L ++APTG+GKT+ L P I E V Sbjct: 193 AFPYGEFRDGQRSFSVSSYRAMAS--AGQLFVQAPTGIGKTIGSLFPAIKAIAEGHHEKV 250 Query: 81 VSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAF 140 + K L +++ LK + + +C Sbjct: 251 FFLTAKTSGRAVAEKSLADMQEKGLLLKTVTLTAKEK-IC-------------------- 289 Query: 141 LDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY 200 P + + + C G D K + + + + A + + Sbjct: 290 ----FNPGSPCDPEHCEYAVGYYD--KLNSVIESSLEATNYFKRDDIEHIARENT----- 338 Query: 201 YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPK--NLLLVLDEGHHLPDVAR 258 CPF ++ ++ +VV+ ++ V + L D ++DE H+L D R Sbjct: 339 ---MCPFELSLDLLEWVDVVICDYNYVFDPVVYLRRLFDDPLVEHCFLVDEAHNLVDRGR 395 Query: 259 DALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASL 318 D E +L++ + R ++ + +++ + Sbjct: 396 DMFSAQIEKD------------RLLSVKRQVKRSSSVEVGGVLRKIDGINRAFLSIRKEH 443 Query: 319 NNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHD 378 ++ L + + L LR E + L+E Sbjct: 444 SHSLEQ------------------HGFSVVDEPPTVLISKLRSFCEHLQHWLAEHERDGR 485 Query: 379 IVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGI 438 L + + R A ++++ L + + Sbjct: 486 DYDL------------LLDLYFDALRFTRTADYFDDHYVCLIKTDKKK---LLSINLYCV 530 Query: 439 RVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQG 498 S L + L + SATL +N Q++ G+ +FV L SPF H QG Sbjct: 531 DPSRLLGKGL-ERSKSSLFFSATLAPIN---YYQQLLGVS--PTSQFVDLPSPFPHENQG 584 Query: 499 KIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYV--TD 556 + + + + E ++A + +ES + +V F S + M++ D + Sbjct: 585 -VFVVKDI-ATNFKQREGSYNKIAVLIQTMIESHR-GNYIVYFPSYQYMEKVYDVFGQQN 641 Query: 557 LRLMLLVQGDQPRYRLVELHRKRVANGERSVLVG----LQSFAEGLDLKGDLLSQVHIHK 612 +++Q Q + R LVG F EG+DLKG L V I Sbjct: 642 SATDIIIQQRQMNEESRQCFLNRFDAAYEHDLVGFAVMGGIFGEGIDLKGLRLIGVIIIG 701 Query: 613 IAFPPIDSPVVITEGEWLKSLNRY---------PFEVQSLPSASFNLIQQVGRLIRSHGC 663 + P + + + + + F ++Q GR+IRS Sbjct: 702 VGLPQMGIERDLIKQHFRDTRVDDVVDQHRTNEGFNYAYQYPGMNRVLQTAGRVIRSEQD 761 Query: 664 WGEVVIYDKRLLTKNYGKRLLDALPVF-PIEQPEVPEGIVKK 704 G V + D+R + Y + P + +E + + K Sbjct: 762 RGIVCLVDERFASARYRQLFP---PHWTNLEVIDQHQLAAKL 800 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.118 0.303 Lambda K H 0.267 0.0363 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,451,765,341 Number of Sequences: 3077464 Number of extensions: 142779555 Number of successful extensions: 485480 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1421 Number of HSP's successfully gapped in prelim test: 1553 Number of HSP's that attempted gapping in prelim test: 473775 Number of HSP's gapped (non-prelim): 5560 length of query: 716 length of database: 1,040,396,356 effective HSP length: 136 effective length of query: 580 effective length of database: 621,861,252 effective search space: 360679526160 effective search space used: 360679526160 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 96 (41.8 bits)