HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/39eea881c3646438/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/39eea881c3646438/query.hhm DATE Wed Jan 11 02:13:13 2012 LENG 90 match states, 90 columns in multiple alignment FILT 4 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.4371 0.4439 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC >ss_conf 960464499841899999999975999972710010235568999999999999999999999987531166865414641243333669 >Consensus mxmxklTxkeMTexeQrevkTxldxaRxxxGRxLTNaExNxvKxxxixxixxxrekxxKxxrxxkKxqxxxpxxeatfsWsAxxxxRgxr >batch____ MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKKDYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR >UniRef50_A8GDY4(1-85:88) Putative uncharacterized protein n=31 Tax=Enterobacteriaceae RepID=A8GDY4_SERP5 E=4e-08 s/c=0.70 id=42% cov=94% --MKKLTLKDMTESEQREVKTELDKARKNLGRALTNAENNKIKDEVVARITAARAKIEKATRAERKANRIQPTGE-TFNWTASiNSTR--- >UniRef50_B4F2W5(1-87:87) Putative uncharacterized protein n=7 Tax=Enterobacteriaceae RepID=B4F2W5_PROMH E=4e-06 s/c=0.60 id=38% cov=98% --MKKLTLQEMTDAQQMRVRTRIGQERKKLGRELTNAEMNKVKDAIITEISLEVEKASKKALSQKKKQKLVSSDE-TYSWSAQNHRRGYR >UniRef50_C9Y1X1(1-90:90) Uncharacterized protein yjbD n=4 Tax=Enterobacteriaceae RepID=C9Y1X1_CROTZ E=3e-18 s/c=1.03 id=74% cov=101% MSLPRLTQKEMTESEQRELKTLLDRARIAHGRPLTNSEANHVKKEYIDKLMAQREQAAKQTRKQKKAQAYKPDSDATFSWSASTHVRGRR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1194 0 0 A 2 1000 * * * * * * * * * * * * * * 1000 * * * * 2 0 * * * * * * 1194 0 0 L 3 * * * * * * * * * 1143 870 * * * * * * * * * 3 0 * * * * * * 1875 0 0 P 4 * * * * * * * * 870 * * * 1143 * * * * * * * 4 0 * * * * * * 1875 0 0 R 5 * * * * * * * * 870 * * * * * 1143 * * * * * 5 0 * * * * * * 1875 0 0 I 6 * * * * * * * 2112 * 380 * * * * * * * * * * 6 0 * * * * * * 1875 0 0 T 7 * * * * * * * * * * * * * * * * 0 * * * 7 0 * * * * * * 1875 0 0 Q 8 * * * * * * * * * 870 * * * 1143 * * * * * * 8 0 * * * * * * 1875 0 0 K 9 * * * * * * * * 487 * * * * 1805 * * * * * * 9 0 * * * * * * 1875 0 0 E 10 * * 1939 436 * * * * * * * * * * * * * * * * 10 0 * * * * * * 1875 0 0 M 11 * * * * * * * * * * 0 * * * * * * * * * 11 0 * * * * * * 1875 0 0 T 12 * * * * * * * * * * * * * * * * 0 * * * 12 0 * * * * * * 1875 0 0 E 13 * * 1805 487 * * * * * * * * * * * * * * * * 13 0 * * * * * * 1875 0 0 R 14 1805 * * * * * * * * * * * * * 2112 1052 * * * * 14 0 * * * * * * 1875 0 0 E 15 * * * 487 * * * * * * * * * 1805 * * * * * * 15 0 * * * * * * 1875 0 0 Q 16 * * * * * * * * * * * * * 0 * * * * * * 16 0 * * * * * * 1875 0 0 R 17 * * * * * * * * * * 1805 * * * 487 * * * * * 17 0 * * * * * * 1875 0 0 E 18 * * * 487 * * * * * * * * * * 1805 * * * * * 18 0 * * * * * * 1875 0 0 L 19 * * * * * * * * * 1143 * * * * * * * 870 * * 19 0 * * * * * * 1875 0 0 K 20 * * * * * * * * 487 * * * * * 1805 * * * * * 20 0 * * * * * * 1875 0 0 T 21 * * * * * * * * * * * * * * * * 0 * * * 21 0 * * * * * * 1875 0 0 L 22 * * * 1939 * * * * * 1143 * * * * 1805 * * * * * 22 0 * * * * * * 1875 0 0 L 23 * * * * * * * 1805 * 487 * * * * * * * * * * 23 0 * * * * * * 1875 0 0 D 24 * * 487 * * 1805 * * * * * * * * * * * * * * 24 0 * * * * * * 1875 0 0 R 25 * * * * * * * * 1939 * * * * 1805 1143 * * * * * 25 0 * * * * * * 1875 0 0 A 26 487 * * 1805 * * * * * * * * * * * * * * * * 26 0 * * * * * * 1875 0 0 R 27 * * * * * * * * * * * * * * 0 * * * * * 27 0 * * * * * * 1875 0 0 I 28 * * * * * * * 1143 870 * * * * * * * * * * * 28 0 * * * * * * 1875 0 0 A 29 1143 * * * * * * * 1805 * * 1939 * * * * * * * * 29 0 * * * * * * 1875 0 0 H 30 * * * * * * 1143 * * 870 * * * * * * * * * * 30 0 * * * * * * 1875 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 1875 0 0 R 32 * * * * * * * * * * * * * * 0 * * * * * 32 0 * * * * * * 1875 0 0 V 33 1939 * * 1805 * * * * * * * * 2174 * * * * 2112 * * 33 0 * * * * * * 1875 0 0 L 34 * * * * * * * * * 0 * * * * * * * * * * 34 0 * * * * * * 1875 0 0 T 35 * * * * * * * * * * * * * * * * 0 * * * 35 0 * * * * * * 1875 0 0 N 36 * * * * * * * * * * * 0 * * * * * * * * 36 0 * * * * * * 1875 0 0 S 37 870 * * * * * * * * * * * * * * 1143 * * * * 37 0 * * * * * * 1875 0 0 E 38 * * * 0 * * * * * * * * * * * * * * * * 38 0 * * * * * * 1875 0 0 T 39 2174 * * * * * * * * * 1805 1939 * * * * 2112 * * * 39 0 * * * * * * 1875 0 0 N 40 * * * * * * * * * * * 0 * * * * * * * * 40 0 * * * * * * 1875 0 0 S 41 * * * * * * 2174 * 870 * * * * * * 2112 * * * * 41 0 * * * * * * 1875 0 0 I 42 * * * * * * * 1023 * * * * * * * * * 978 * * 42 0 * * * * * * 1875 0 0 K 43 * * * * * * * * 0 * * * * * * * * * * * 43 0 * * * * * * 1875 0 0 K 44 * * 870 * * * * * 1143 * * * * * * * * * * * 44 0 * * * * * * 1875 0 0 D 45 1805 * 2112 1052 * * * * * * * * * * * * * * * * 45 0 * * * * * * 1875 0 0 Y 46 * * * * * * * 1805 * * * * * * * * * 1939 * 1143 46 0 * * * * * * 1875 0 0 I 47 * * * * * * * 436 * * * * * * * * * 1939 * * 47 0 * * * * * * 1875 0 0 D 48 1939 * 1143 * * * * * * * * * * * * * 1805 * * * 48 0 * * * * * * 1875 0 0 K 49 * * * 1805 * * * * 1143 * * * * * 1939 * * * * * 49 0 * * * * * * 1875 0 0 L 50 * * * * * * * 870 * 1143 * * * * * * * * * * 50 0 * * * * * * 1875 0 0 M 51 * * * * * * * * * * 1143 * * * * 1805 1939 * * * 51 0 * * * * * * 1875 0 0 V 52 1052 * * * * * * * * 1805 * * * * * * * 2112 * * 52 0 * * * * * * 1875 0 0 E 53 1939 * * 950 * * * * * * * * * 2174 * * * * * * 53 0 * * * * * * 1875 0 0 R 54 * * * * * * * * * * * * * * 487 * * 1805 * * 54 0 * * * * * * 1875 0 0 E 55 1939 * * 436 * * * * * * * * * * * * * * * * 55 0 * * * * * * 1875 0 0 A 56 2112 * * * * * * * 870 * * * * 2174 * * * * * * 56 0 * * * * * * 1875 0 0 E 57 978 * * 2112 * * * 1939 * * * * * * * * * * * * 57 0 * * * * * * 1875 0 0 A 58 1143 * * 1939 * * * * * * * * * * * 1805 * * * * 58 0 * * * * * * 1875 0 0 K 59 * * * * * * * * 0 * * * * * * * * * * * 59 0 * * * * * * 1875 0 0 K 60 1939 * * * * * * * 950 * * * * 2174 * * * * * * 60 0 * * * * * * 1875 0 0 A 61 950 * * * * * * * * * * * * * * * 1052 * * * 61 0 * * * * * * 1875 0 0 R 62 * * * * * * * * * 1805 * * * * 487 * * * * * 62 0 * * * * * * 1875 0 0 Q 63 1939 * * * * * * * 2174 * * * * 2112 * 1805 * * * * 63 0 * * * * * * 1875 0 0 L 64 * * * 1939 * * * * * 2112 * * * 978 * * * * * * 64 0 * * * * * * 1875 0 0 K 65 * * * * * * * * 436 * * * * * 1939 * * * * * 65 0 * * * * * * 1875 0 0 K 66 * * * * * * * * 0 * * * * * * * * * * * 66 0 * * * * * * 1875 0 0 K 67 1052 * * * * * * * 950 * * * * * * * * * * * 67 0 * * * * * * 1875 0 0 Q 68 * * * * * * * * * * * 1939 * 436 * * * * * * 68 0 * * * * * * 1875 0 0 A 69 1143 * * * * * * * 1805 * * * * * 1939 * * * * * 69 0 * * * * * * 1875 0 0 Y 70 * * * * * * * 1939 * 1805 * * * * * * * * * 1143 70 0 * * * * * * 1875 0 0 K 71 * * * * * * * * 1143 * * * * 1939 * * * 1805 * * 71 0 * * * * * * 1875 0 0 P 72 * * * * * * * * * * * * 487 * * 1805 * * * * 72 0 * * * * * * 1875 0 0 D 73 * * 1143 * * * * * * * * * * * * 1805 1939 * * * 73 0 * * * * * * 1875 0 0 P 74 * * 1805 * * 1939 * * * * * * 2112 * * 2174 * * * * 74 0 * * * * * * 1875 0 0 E 75 * * 2174 361 * * * * * * * * * * * * * * * * 75 1143 * 870 * * * * 1875 0 0 A 76 0 * * * * * * * * * * * * * * * * * * * 76 0 * * * * 0 * 1194 0 1498 S 77 * * * * * * * * * * * * * * * 2112 380 * * * 77 0 * * * * * * 1875 0 0 F 78 * * * * 487 * * * * * * * * * * * * * * 1805 78 0 * * * * * * 1875 0 0 S 79 * * * * * * * * * * * 1939 * * * 436 * * * * 79 0 * * * * * * 1875 0 0 W 80 * * * * * * * * * * * * * * * * * * 0 * 80 0 * * * * * * 1875 0 0 S 81 * * * * * * * * * * * * * * * 436 1939 * * * 81 0 * * * * * * 1875 0 0 A 82 0 * * * * * * * * * * * * * * * * * * * 82 0 * * * * * * 1875 0 0 N 83 * * * * * * * * * * * 2112 * 1805 * 1052 * * * * 83 436 1939 * 0 * * * 1875 1000 0 T 84 * * * * * * * * * * * 870 * * * * 1143 * * * 84 0 * * * * * * 1875 0 0 S 85 * * * * * * 978 * * * * * * * * 1023 * * * * 85 0 * * * * * * 1875 0 0 T 86 * * * * * * * * * * * * * * 1805 * 1023 2174 * * 86 0 * * * * * * 1875 0 0 R 87 * * * * * * * * * * * * * * 0 * * * * * 87 0 * * * * * * 1875 0 0 G 88 * * * * * 0 * * * * * * * * * * * * * * 88 0 * * * * * * 1640 0 0 R 89 * * * * * * * * * * * * * * 711 * * * * 1361 89 0 * * * * * * 1640 0 0 R 90 * * * * * * * * * * * * * * 0 * * * * * 90 0 * * 0 * * * 1640 0 0 //