BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (285 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P19932 Hydrogenase-1 operon protein hyaF n=196 Tax=Ente... 578 e-164 UniRef50_B5F604 Hydrogenase-1 operon protein HyaF2 n=38 Tax=Salm... 140 3e-32 UniRef50_D2LGL6 HupH hydrogenase expression protein n=1 Tax=Rhod... 140 4e-32 UniRef50_B2IJ35 HupH hydrogenase expression protein n=9 Tax=Alph... 132 2e-29 UniRef50_P31911 Hydrogenase expression/formation protein hoxQ n=... 127 5e-28 UniRef50_B2JX95 HupH hydrogenase expression protein n=1 Tax=Burk... 122 1e-26 UniRef50_C7I142 HupH hydrogenase expression protein n=1 Tax=Thio... 119 1e-25 UniRef50_P28150 Hydrogenase expression/formation protein hupH n=... 118 3e-25 UniRef50_Q03007 Hydrogenase expression/formation protein hupH n=... 117 5e-25 UniRef50_A1KC55 Hydrogenase-1 operon protein hupH n=1 Tax=Azoarc... 115 2e-24 UniRef50_Q60CE7 Putative hydrogenase expression/formation protei... 115 2e-24 UniRef50_P48340 Hydrogenase expression/formation protein hupH n=... 113 9e-24 UniRef50_Q478M1 HupH hydrogenase expression protein, C-terminal ... 110 4e-23 UniRef50_Q43957 Hydrogenase expression/formation protein hupQ n=... 110 5e-23 UniRef50_P40594 Hydrogenase expression/formation protein hoxQ n=... 108 2e-22 UniRef50_A0P1N4 HupH hydrogenase expression/formation protein n=... 107 6e-22 UniRef50_Q9ANQ2 HupH protein n=1 Tax=Bradyrhizobium japonicum Re... 104 4e-21 UniRef50_Q56363 HupH n=1 Tax=Thiocapsa roseopersicina RepID=Q563... 97 5e-19 UniRef50_Q0A722 HupH hydrogenase expression protein n=1 Tax=Alka... 89 2e-16 UniRef50_Q2RV78 Hydrogenase expression/formation protein hupH n=... 82 3e-14 UniRef50_A5FVC8 HupH hydrogenase expression protein n=1 Tax=Acid... 65 2e-09 UniRef50_B4U667 HupH hydrogenase expression protein n=1 Tax=Hydr... 60 9e-08 UniRef50_B3DVL9 HupH hydrogenase expression protein n=1 Tax=Meth... 56 1e-06 UniRef50_B5ERL8 HupH hydrogenase expression protein n=2 Tax=Acid... 56 2e-06 UniRef50_B8GQG1 Putative uncharacterized protein n=1 Tax=Thioalk... 54 6e-06 UniRef50_A8UUE6 Putative uncharacterized protein n=3 Tax=Aquific... 48 3e-04 UniRef50_B2ICM0 Putative uncharacterized protein n=1 Tax=Beijeri... 46 0.001 UniRef50_A1HTR0 HupH hydrogenase expression protein n=1 Tax=Ther... 43 0.015 UniRef50_C8S1B1 HupH hydrogenase expression protein n=1 Tax=Rhod... 42 0.016 UniRef50_C5S7N4 HupH hydrogenase expression protein n=1 Tax=Allo... 42 0.027 >UniRef50_P19932 Hydrogenase-1 operon protein hyaF n=196 Tax=Enterobacteriaceae RepID=HYAF_ECOLI Length = 285 Score = 578 bits (1491), Expect = e-164, Method: Compositional matrix adjust. Identities = 285/285 (100%), Positives = 285/285 (100%) Query: 1 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL Sbjct: 1 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 Query: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV Sbjct: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 Query: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN 180 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN Sbjct: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN 180 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT Sbjct: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT Sbjct: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 >UniRef50_B5F604 Hydrogenase-1 operon protein HyaF2 n=38 Tax=Salmonella enterica RepID=B5F604_SALA4 Length = 353 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 3/280 (1%) Query: 7 HLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 ++ GPG+QP ++ F+ P+P + P + A +L L ++ Sbjct: 11 NIAGPGSQPEEEDFNFLPIPAGINLPLTPVLPEQALPAELRVARHILTTLIRDMNNPVAT 70 Query: 67 LGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG- 125 L L+ L + ++ LLGEGE+S R+ D E IQE +F G+WRVR Sbjct: 71 LPFPLSYKLNATEQQNSGLLDQLLGEGEISARVLLPDGKEQRIQETVFTGVWRVREYNAD 130 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRNPDAQP 185 ++ + D++ G P ++WQ Q P LPP GLMNG +AHE+ V P +P Sbjct: 131 QQRVADEIIIGPIPESIWQTHPQP--PITPELPPQPAGLMNGAFIAHEIAERVNQPVKEP 188 Query: 186 HSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPL 245 H INLT LP+++ADR +L G G I + GYG+ I +T VW + + + L Sbjct: 189 HIINLTLLPVNDADREYLDHFLGEGCSAIFSRGYGKCRIVSTHFPGVWRVNYFNDMNTLL 248 Query: 246 LESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 + EI IP++ +A +D+ D+ L +WL E T Sbjct: 249 QDMIEIADIPDIAVAGIDDIEDAYAGLKNTLEWLKEYPAT 288 >UniRef50_D2LGL6 HupH hydrogenase expression protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL6_RHOVA Length = 280 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 95/274 (34%), Positives = 146/274 (53%), Gaps = 11/274 (4%) Query: 8 LLGPGTQPNDDS--FSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQP 65 L GPG+QP+D+ + LP P + E A + L+ L Sbjct: 7 LAGPGSQPDDEDGDLAFMELPKGMATFSMPQIPEPEVAAAHAAALEKLDAALEALRAAPA 66 Query: 66 PLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG 125 P G + +DLL+L+AD+R F++ +LGEGEVS+ S + QE++ G+WR+ Sbjct: 67 P-GTSITIDLLDLDADNRAFVDQMLGEGEVSI----VAGSHVQAQESVLAGVWRIHVVGS 121 Query: 126 E-KLLEDKLEAGCAPLALWQAATQNLLPT-DSLLPPPIDGLMNGLPLAHELLAHVRN--P 181 + L+ D +E G PL++ AA PT +L D LMN +A EL + P Sbjct: 122 DGALIADAIEVGEFPLSVLAAAQDAGAPTLRALDAVAEDDLMNAPSIAAELADKLAAFAP 181 Query: 182 DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTL 241 PH+INLT LP+S+ D +L G G + I + GYG I++TG+R+ W +R ++ Sbjct: 182 GTPPHAINLTLLPVSDGDLAYLDARLGQGAVTILSRGYGNCRISSTGVRNAWWVRYFNSR 241 Query: 242 KGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEV 275 + +L + E+C +P+V AA EDL DSA+RL+E+ Sbjct: 242 EILILNTIEVCRVPDVACAAREDLEDSAERLAEI 275 >UniRef50_B2IJ35 HupH hydrogenase expression protein n=9 Tax=Alphaproteobacteria RepID=B2IJ35_BEII9 Length = 295 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 8/280 (2%) Query: 9 LGPGTQPNDDSFSMNPLPITCQVND-EPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 GPG+QP D + L + V P + + + Q IA L EL+ + Q Sbjct: 12 FGPGSQPQTDEDGLQYLAMPSGVTTYSPHLPEIVDPLAARQAIAFLGELREAAT--QWTQ 69 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR--RRG 125 G L L+A R +N LGEGEVSV ++ E+QE +F GLW +R Sbjct: 70 GHSNIHKLETLDAACRLMVNDALGEGEVSVLLEDPT-GRIEVQETVFAGLWCLRALPASD 128 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAH--VRNPDA 183 + L +++E P ++ A D P G++N + ELL H P A Sbjct: 129 TESLREQVEIAAFPRSVLSRAFPAARTMDLAALTPPSGIVNAPAILTELLEHSAAWRPGA 188 Query: 184 QPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243 HSINLT LP + D F+ + G G + I + GYG I AT HVW +R +++ Sbjct: 189 VSHSINLTLLPHTPEDLAFIDHVLGQGRVTILSRGYGNCRIEATATPHVWRVRYYNSMDT 248 Query: 244 PLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAA 283 +L+ E+ +PEV AAPED+ DSAQRL+E+C+ L + A Sbjct: 249 LILDMIEVVDVPEVACAAPEDIQDSAQRLAEICEALEQEA 288 >UniRef50_P31911 Hydrogenase expression/formation protein hoxQ n=6 Tax=Proteobacteria RepID=HOXQ_RALEH Length = 282 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 140/277 (50%), Gaps = 10/277 (3%) Query: 8 LLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 LLGPG+Q D++ +P V P + EQ A Q ++L + L +R P Sbjct: 10 LLGPGSQAEDETLDYIHMPQGMSVYTPPVLPEPEQIACLTQAQSVLRAILDAL-DRADPK 68 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK 127 ++L L+ ++R + +LGEGEVS RI+ + + IQEA+F G+WRV + Sbjct: 69 QPNPRIELWALDEENRQLLKQVLGEGEVSARIE--GEYQVYIQEAVFAGVWRVVSTCPDA 126 Query: 128 LLEDKLEAGCAPLALWQAATQ--NLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDA 183 D +E G AP L AA N D P DG+MN + E+ + +P Sbjct: 127 T-TDYIEVGAAPEVLRGAARYGANQWSLDVGRVP--DGVMNAPSILAEIDDQLLSWHPGK 183 Query: 184 QPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243 H +NLT LP+S D FL G ++ I + GYG I++T + + W + ++ Sbjct: 184 PVHVVNLTLLPMSPQDITFLDETLGAASVTILSRGYGNCRISSTAVPYCWRVVYFNSQDT 243 Query: 244 PLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 +L + EI +PEV AAPEDL DS +RL+EV +W+ Sbjct: 244 TILNTVEITDLPEVACAAPEDLRDSHERLTEVLKWVG 280 >UniRef50_B2JX95 HupH hydrogenase expression protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX95_BURP8 Length = 292 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 16/289 (5%) Query: 4 TFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSER 63 + GPG+ P D++S PLP T ++ + A E A V+ALL + L + Sbjct: 8 SIIRAAGPGSLPEPDNWSCLPLPSTSEIWR--TTATPEHGAG--DVLALLRAMVTAL-DG 62 Query: 64 QPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSES------EIQEAIFCGL 117 P L + L AD + ++GEGEVS R+ + + + IQE + G+ Sbjct: 63 NPSPAHPLVFRVGTLGADAHRLLAQIMGEGEVSARVVSSRGTRAHAGALVRIQECRYPGI 122 Query: 118 WRVRRRRGEKL-LEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLA 176 WR+ + ++D++E G P A+ A + ++ L + +A E+ A Sbjct: 123 WRIIVDSANGVRIDDRIEIGAIPAAILYEARHSGTTQGTIPDTSSHKLTSAPSIASEIAA 182 Query: 177 H----VRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHV 232 V A H IN + LP++ AD +L + G G + I + GY + + AT RHV Sbjct: 183 AQARAVSRRGAGSHVINFSLLPVTPADVAWLDNMLGAGTVSIFSTGYCKCTVIATTWRHV 242 Query: 233 WHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAE 281 W +R D LL++ I IPE+V+AA EDL+DS + L E+ +WL E Sbjct: 243 WRVRYFDGSNKVLLDTLNIALIPEMVIAAAEDLMDSLRHLREIVKWLEE 291 >UniRef50_C7I142 HupH hydrogenase expression protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I142_THIIN Length = 285 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 143/273 (52%), Gaps = 10/273 (3%) Query: 9 LGPGTQP-NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 +GPG+QP D++ +P +D S+ E+ +V L ++L + R + Sbjct: 12 VGPGSQPIEDEALEYMAMPKEMFTHDLVSLPESEELRDRTRVRDLFDDLLA--TTRAYSV 69 Query: 68 GEV-LAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR-RRG 125 G+ +A DL L+A D +N +LG GEVSV + D+ QE++ G+WRVR+ Sbjct: 70 GDKGIAHDLSQLDAADLDCLNQILGVGEVSVTLDLPGDTLLA-QESVLTGIWRVRQIDAA 128 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLP-PPIDGLMNGLPLAHELLAHVRN--PD 182 + +L+D LE G P A+ ++++ P +LLP PI G+ N L E+ + P Sbjct: 129 QTVLDDHLEVGDVPHAV-RSSSFGAAPGTALLPGAPIPGVQNAPALLVEIAEKMSTWTPG 187 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 Q H INLT LP++ D + L G G I + GYG I AT + +VW ++ ++ Sbjct: 188 DQAHVINLTLLPLTREDLIHLGSELGVGPATILSRGYGNCRIGATRMPNVWWVKYFNSQD 247 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEV 275 +L + EI +P V LAA EDL D+A RL E+ Sbjct: 248 ALILNTIEIVDVPAVALAAQEDLADTADRLHEI 280 >UniRef50_P28150 Hydrogenase expression/formation protein hupH n=3 Tax=Rhizobium RepID=HUPH_RHILV Length = 282 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 15/226 (6%) Query: 65 PPLGEVLAV----------DLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIF 114 P L + LAV D+ + DDR I LGEGEV+ A+ +++QEA+ Sbjct: 55 PELADALAVQKAEQPGRLFDITDFPDDDRELITQTLGEGEVAGVAALANGVTAQMQEAVM 114 Query: 115 CGLWRVRRRRGE-KLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHE 173 G+WR+R + +L+ D +E P A+ QA + LP P G MN +P+ E Sbjct: 115 AGVWRIRFTDVDGRLIADYIEVASIPAAVRQACSG--LPASISHGPAPAGAMNVMPVLTE 172 Query: 174 LLAHV-RNPDAQP-HSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRH 231 + + R D P H I + P+S D FL G G +Q+ + GYG + ATG R+ Sbjct: 173 IGDRIARYRDGDPAHVITFSLFPMSPEDMAFLQDALGAGPVQLTSRGYGTCRVVATGARN 232 Query: 232 VWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 VW ++ + + +L++ E+C IP V +AA ED DS RL ++ + Sbjct: 233 VWSVQFYNAMDTIILDTLEVCNIPSVAIAAEEDFRDSEARLRDIWE 278 >UniRef50_Q03007 Hydrogenase expression/formation protein hupH n=8 Tax=Rhodobacteraceae RepID=HUPH_RHOCA Length = 275 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 22/283 (7%) Query: 6 FHL----LGPGTQP-NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 FHL GPG+QP D+ LP + + +E + + LL+E+ Sbjct: 5 FHLPPVGFGPGSQPEGDEELGYMQLPSGMRTYS-AHLPEVEDSSAVTPALKLLDEIAA-- 61 Query: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 G + + DL L+A +R I +G+GEV+++I+ +QE++F G+W V Sbjct: 62 GAEACARGGMASFDLAGLDAQNRALIAETMGQGEVAMKIRGI--PALMVQESVFAGVWSV 119 Query: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELL----A 176 G + D++E G P A A + + LPP DG++N L EL A Sbjct: 120 A---GAGV--DRIEVGAVPAAALSRAFEPFRKGQTALPPLSDGVVNAPALIAELFDKSAA 174 Query: 177 HVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLR 236 +V INLT LP +E D L + G G + I + GYG I AT HVW ++ Sbjct: 175 YV---GGAADVINLTLLPHTEEDLTLLDYMLGEGAVTILSRGYGNCRITATATPHVWRVQ 231 Query: 237 CTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWL 279 ++ +L++ E+ +PEV LAA EDL DSA R+ EV + + Sbjct: 232 FYNSTDALILDTIEVTTMPEVALAAREDLEDSAGRIREVLEAI 274 >UniRef50_A1KC55 Hydrogenase-1 operon protein hupH n=1 Tax=Azoarcus sp. BH72 RepID=A1KC55_AZOSB Length = 290 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 130/277 (46%), Gaps = 14/277 (5%) Query: 10 GPGTQPNDD-SFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLG 68 GPG+QP +D + PLP P + A +A L L + Sbjct: 17 GPGSQPEEDEALDYLPLPSGMDTFAPPRLPDHIDPASRATAVATLQGLLAAMRAWTFGTP 76 Query: 69 EVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV-RRRRGEK 127 VDL L+ IN LG+GEVS R+ ++E IQE +F G+WRV RG + Sbjct: 77 GHPVVDLAPLDGASLALINDALGQGEVSARVL--GETELRIQETVFAGIWRVVETDRGGR 134 Query: 128 LLEDKLEAGCAPLALWQAATQNL--LPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDA 183 L D++EA P + T++L P P G+MN + +ELL V R P A Sbjct: 135 RLSDRIEACAMPA---EVITRSLEAAQAAIAAPTPPQGVMNAPAVLNELLHAVATRRPGA 191 Query: 184 QPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243 H +NLT LP++ AD +L + G G I + GYG I AT L W ++ ++ Sbjct: 192 AAHIVNLTLLPMNPADLAWLVEVLGVGPTVILSRGYGNCRITATALARTWWVQYFNSADT 251 Query: 244 PLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 +L + E+ +P+V AA +D DS RL E W+A Sbjct: 252 LILNTLEVTELPDVAPAAADDFGDSIARLEE---WIA 285 >UniRef50_Q60CE7 Putative hydrogenase expression/formation protein n=1 Tax=Methylococcus capsulatus RepID=Q60CE7_METCA Length = 278 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 138/276 (50%), Gaps = 15/276 (5%) Query: 6 FHLLGPGTQP-----NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 F + G P +D + P+P P + AL + + + A+L ++ +L Sbjct: 5 FAFIATGNTPLFRLHDDPECTCPPMPEAMATFTPPPLHALSR-DETGEGCAVLQKVIERL 63 Query: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 G VDL + R F++ +LGEGEV +RI D + I+E++F G+WRV Sbjct: 64 G------GAPGIVDLAPCDPAARRFVDEVLGEGEVLIRIVTPRDRVT-IRESVFAGVWRV 116 Query: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPI-DGLMNGLPLAHELLAHVR 179 + R +L D LE G P A++ A + + P +GLMN L E+ H Sbjct: 117 QHRIDGELRRDDLETGPVPEAVYGWAERLTVDGPPHRPQSFPEGLMNAPALLTEIFDHSA 176 Query: 180 N-PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCT 238 + P+ +PH INL+ LP++ D FL G + + + GYG+ + T L +VW ++ Sbjct: 177 DCPNDRPHVINLSLLPLTPEDSKFLIDTLGTAGLSVLSRGYGDCRVTLTRLPNVWWVQYF 236 Query: 239 DTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSE 274 ++ +L + EI +P VV AAPEDL DS +R++E Sbjct: 237 NSPGQLILNTLEITRLPAVVAAAPEDLEDSRERIAE 272 >UniRef50_P48340 Hydrogenase expression/formation protein hupH n=11 Tax=Bradyrhizobiaceae RepID=HUPH_BRAJA Length = 287 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 47 PQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSE 106 P +ALL+ + ++ ++ L L NLN + I +LGEGEV+ + D S Sbjct: 55 PNAVALLSRIADAIAGQKADAPSQL-FRLANLNDLESKLIADVLGEGEVAGVVALPDGSL 113 Query: 107 SEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMN 166 ++IQE++ G+WRVR + LE G P + +AA +L D + +G MN Sbjct: 114 AQIQESVLAGIWRVRLETDAN--HEYLEIGAVPEIVKRAAA-DLTSADFEIGQVPEGAMN 170 Query: 167 GLPLAHELL--AHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 LP+ E+ A P + IN T LP+S D FL G IQ+ + GYG + Sbjct: 171 VLPVLAEIRERALAWRPGIRSQIINFTLLPMSPVDMSFLQDTIRNGPIQLVSRGYGTCRV 230 Query: 225 NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 +TG+R+VW ++ + + +L++ E+ +P V LAA ED DSA+RL E+ + Sbjct: 231 LSTGIRNVWSVQFFNAMDTIILDTLEVGGVPTVALAADEDFEDSAERLKEIIE 283 >UniRef50_Q478M1 HupH hydrogenase expression protein, C-terminal conserved region n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M1_DECAR Length = 287 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 19/281 (6%) Query: 9 LGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLG 68 +GPG+Q D++ P+P + +P + + A P+V+ L ++ G Sbjct: 16 MGPGSQ-GDETPDYLPMPKGMETFSQPRLP--DNVA--PEVVNRAASLLGTFADEAERFG 70 Query: 69 EVLA--VDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGE 126 A ++LL+L+A R IN +G GEVS + +QE F GLWRV + + Sbjct: 71 FEGAARLELLDLDATMRDVINQSMGFGEVSAFTTAP--AHWRVQETAFSGLWRVLKVADD 128 Query: 127 -KLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPID---GLMNGLPLAHELL--AHVRN 180 ++ D LE G P L T+ ++ T + PP D G MN L E+ A Sbjct: 129 GAMMVDHLETGSVPAVL----TEAMVSTSTADLPPPDYPAGCMNAQALVEEIRMQAAAWK 184 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 H INLT LP+S+AD L G + I + GYG I +T L++VW ++ ++ Sbjct: 185 AGDSAHVINLTLLPVSDADLDTLYGWLGHREVSILSRGYGNCRITSTRLKNVWWVQYFNS 244 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAE 281 + +L S EI +PEV LAA ED DS +RL E + E Sbjct: 245 MDTLILNSIEIVGMPEVALAADEDFSDSVERLREYLDMMVE 285 >UniRef50_Q43957 Hydrogenase expression/formation protein hupQ n=2 Tax=Gammaproteobacteria RepID=HUPQ_AZOCH Length = 284 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 133/278 (47%), Gaps = 13/278 (4%) Query: 9 LGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLG 68 GPG+ +D P+P + PS+ EQ P +ALL LQ L+ + +G Sbjct: 12 FGPGSHGEEDRLDYLPMPREMHTFERPSLPEPEQLDSHPIALALLERLQEALTAYR--IG 69 Query: 69 EVLAVDLLNLNAD-DRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG-E 126 E V L+ D + +LGEGEV+ IQ IQE + G+W V+ + G Sbjct: 70 EQSRVIGLDRQPKADLKLLQQILGEGEVA--IQVGGQRPVRIQETVLAGVWWVQLQVGLG 127 Query: 127 KLLEDKLEAGCAP-LALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELL----AHVRNP 181 +++ LE P L +A + P P D L+N P+ ELL H + Sbjct: 128 EVVGQWLEVADIPALVRRRAFAEARWPRLGATLP--DDLLNAGPVLVELLEAAKQHAEHA 185 Query: 182 DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTL 241 A PH INL+ LP S D+ FL+ G G + + + GYG I +T +W ++ ++ Sbjct: 186 SATPHVINLSLLPFSAEDQRFLAEQLGEGPVTVLSRGYGNCRIASTATPGIWRVQYFNST 245 Query: 242 KGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWL 279 +L++ E+ IP+ AA ED+ DSA+RL E+ + L Sbjct: 246 DRLILDTLEVTAIPQAACAAQEDIDDSAERLREIREAL 283 >UniRef50_P40594 Hydrogenase expression/formation protein hoxQ n=3 Tax=Azotobacter vinelandii RepID=HOXQ_AZOVI Length = 283 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 14/278 (5%) Query: 9 LGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLG 68 GPG+ ++ +P + + P++ Q + P +ALL LQ L + +G Sbjct: 12 FGPGSHGEEERPDCPSMPRAMRRFERPALPEPGQLSGHPIALALLERLQEALGAYR--IG 69 Query: 69 EVLAVDLLNLNAD-DRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGE- 126 E V L+ D + +LGEGEV+ IQ + IQE + G+W V+ + G Sbjct: 70 EQSRVIGLDRQPKADLKLLQQILGEGEVA--IQVGGQRPARIQETVLAGVWWVQLQIGRG 127 Query: 127 KLLEDKLEAGCAP-LALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELL----AHVRNP 181 +++ LE P L +A + P LP DGL+N P+ ELL H Sbjct: 128 EVVGQWLEVADVPALVRRRAFAETRWPQLGELP---DGLLNAGPVLVELLDAAKRHAERA 184 Query: 182 DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTL 241 A PH++NL+ LP S DR FL+ G G++ + + GYG I +T +W ++ ++ Sbjct: 185 LATPHAVNLSLLPFSPEDRRFLAERLGEGSVTLLSRGYGNCRIASTATPGIWCVQYFNSS 244 Query: 242 KGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWL 279 +L++ E+ IP+V AA ED+ DSA+RL E+ + L Sbjct: 245 DRLILDTLEVTGIPQVACAAQEDIDDSAERLREIREAL 282 >UniRef50_A0P1N4 HupH hydrogenase expression/formation protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N4_9RHOB Length = 277 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 135/286 (47%), Gaps = 21/286 (7%) Query: 1 MSETFFHLLGPGTQPNDDS---FSMNPLPITCQVNDEPSMAALEQCAH--SPQVIALLNE 55 MS ++GPG+QP D+ +P + P++ E+ + + Sbjct: 1 MSNPIGPVVGPGSQPLDEDGGVLDYMSMPSGMMIFAAPNLPEAEEAEDLDAGKAALEALL 60 Query: 56 LQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFC 115 + SER G V DL L+ + +N +LGEGEVSV + + QEA+ Sbjct: 61 RLLEDSERTGTNGRV---DLNGLDEANLALVNQVLGEGEVSV----IGGAALQAQEAVLA 113 Query: 116 GLWRVRRRRGE-KLLEDKLEAGCAP---LALWQAATQNLLPTDSLLPPPIDGLMNGLPLA 171 G+WRVR + + D +E P LA A Q +P P + N PL Sbjct: 114 GVWRVRETAADGRTTADYVEVAAFPRTVLARAFAGAQAQVPIPERFGP---NVFNAPPLL 170 Query: 172 HELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRH 231 E+ H+ ++PH INL+ LP +E D L+ L G G I + GYG I AT R Sbjct: 171 PEINEHIAK--SRPHVINLSLLPHTEEDLGLLNDLLGRGETTILSRGYGNCRIMATATRD 228 Query: 232 VWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 W ++ ++ +L + EICPIP V AAPED+ DSA+RL+E+ + Sbjct: 229 TWWVQFYNSQDTMILNTIEICPIPAVACAAPEDIADSAERLNEILE 274 >UniRef50_Q9ANQ2 HupH protein n=1 Tax=Bradyrhizobium japonicum RepID=Q9ANQ2_BRAJA Length = 183 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 103 DDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPID 162 D S ++I+E++ G+WRVR G + + +E G P + +AAT +L T+ L+ P D Sbjct: 6 DGSLAQIRESVHAGIWRVRI--GTEPAHEYVEVGAIPQIVRRAAT-DLTSTELLIDTPPD 62 Query: 163 GLMNGLPLAHELL--AHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYG 220 G MN P+ E+ A V H INLT LP+S D FL + G G +Q+ GYG Sbjct: 63 GAMNVQPVLAEIRERASVWQFCMNAHVINLTLLPMSVVDLTFLQQSLGNGPVQLMLRGYG 122 Query: 221 ESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 + ATG R+VW ++ ++ +L++ E+ +P V LAA ED DSA R+ E+ + Sbjct: 123 ACRVQATGTRNVWSVQFFNSTDNIILDTVEVGGVPIVALAADEDFQDSAGRVQEILE 179 >UniRef50_Q56363 HupH n=1 Tax=Thiocapsa roseopersicina RepID=Q56363_THIRO Length = 284 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 4/210 (1%) Query: 73 VDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDK 132 +DL L+ +R ++ LGEGEVSV I+Q + QE G+WR+ ++ Sbjct: 77 LDLGPLDLVNRRLVDQTLGEGEVSV-IEQGLQG-TRAQETRLAGVWRLEVPASATARDEL 134 Query: 133 LEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVR--NPDAQPHSINL 190 +E P + ++A + T + + DG+MN L E+ A V P H INL Sbjct: 135 IEVAEIPRFVRESAFIGTIETIAPVAHLADGVMNAPALIAEIEAKVAEWRPGDSAHIINL 194 Query: 191 TQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYE 250 T LP++E D +L G G++ I + GYG I A+G+R VW ++ ++ +L + E Sbjct: 195 TLLPMTEQDHAYLDERLGRGHVTILSRGYGSCRIVASGIRQVWWVQHFNSDDRLILSTLE 254 Query: 251 ICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 + +P LAA ED+ DS RL+E+ + L Sbjct: 255 VTDVPIAALAAQEDIDDSRDRLAEILEALG 284 >UniRef50_Q0A722 HupH hydrogenase expression protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A722_ALHEH Length = 278 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 73 VDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDK 132 +D+ L+ +R ++ +LG+GEVS R+ QE++F G+WRV + D+ Sbjct: 77 LDVSTLSDAERRLLDEVLGDGEVSARLPG---HGVVAQESVFAGVWRVADAAAGR---DR 130 Query: 133 LEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN-PDAQPHSINLT 191 LE G P L A + P L +G+MN + EL H+ + H INL+ Sbjct: 131 LEIGPVPDCLLNAFAE-ASPAPRLPEQWPEGVMNAPGVLSELTEHLDVLSNNGRHVINLS 189 Query: 192 QLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEI 251 LP++ D L G + + GYG + AT VW ++ +++ +L + E+ Sbjct: 190 LLPLTPEDHECLDEALGRSETAVLSRGYGNCRVTATMTAGVWWVQYFNSVDVLILNTLEV 249 Query: 252 CPIPEVVLAAPEDLVDSAQRLSEVCQ 277 +P+VV AAPED+ DSA R++EV + Sbjct: 250 VAVPDVVCAAPEDIADSADRVAEVLE 275 >UniRef50_Q2RV78 Hydrogenase expression/formation protein hupH n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RV78_RHORT Length = 258 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 96/208 (46%), Gaps = 16/208 (7%) Query: 74 DLLNLNADDRHFINTLLGEGEVSVRIQQ-ADDSESEIQEAIFCGLWRVRRRRGEKLLEDK 132 DL +A R I+ LLGEGEV+ + + + ++EA+ GLWR+ G ++ Sbjct: 49 DLAAFDAVGRARIDGLLGEGEVAGLVDRPVEGGALALREAVVPGLWRIAG--GGRV---H 103 Query: 133 LEAGCAPLALWQAATQNLLPTDS---LLPPPIDGLMNGLPLAHELLAHVRNPDAQ----- 184 LE G P A+ AA P D+ + P G+MN L E+ HVR Sbjct: 104 LEVGDIPGAVRAAAAWGNEPPDAERVVRGQP--GVMNARALLDEIARHVRRVGDDLSHEP 161 Query: 185 PHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGP 244 PH I LT P+S D L+R+ G G + + G + T HVW + ++ Sbjct: 162 PHEIILTHTPLSAGDNALLARVLGNGGVTLVAGGRTTCKVTLTACAHVWRVEHFNSEDRL 221 Query: 245 LLESYEICPIPEVVLAAPEDLVDSAQRL 272 +L EI +P V A ED DSA+RL Sbjct: 222 ILHGLEIGDVPAAVRATAEDCGDSARRL 249 >UniRef50_A5FVC8 HupH hydrogenase expression protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FVC8_ACICJ Length = 276 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 16/203 (7%) Query: 79 NADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRR---RGEKLLEDKLEA 135 +A D ++ +L +GEVS + A E +I E + GLWR+R R G +L D+LE Sbjct: 73 SAADCASLDEILLDGEVSALVLGA--PEWQIGETAYTGLWRLRARDAATGRRL--DRLEI 128 Query: 136 GCAPLALWQAATQNL----LPTDSLLPPPIDGLMNGLPLAHELLAH--VRNPDAQPHSIN 189 G P + A + LP +PP ++N + EL A P H IN Sbjct: 129 GPIPAVVAARAAASWGLMELPAPEAIPPE---MVNAPHVLAELRARSAAFRPGGAAHVIN 185 Query: 190 LTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESY 249 L LP++EA+ +L R G G I + GYG I +T L W ++ + +L + Sbjct: 186 LGLLPLAEAELTWLVRTLGEGPAIILSGGYGTCRIRSTRLAGTWWVQYYNAADALILNTL 245 Query: 250 EICPIPEVVLAAPEDLVDSAQRL 272 EI +P V AA +D+ +SA R+ Sbjct: 246 EIAAVPAVACAAQDDVAESASRV 268 >UniRef50_B4U667 HupH hydrogenase expression protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U667_HYDS0 Length = 129 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 164 LMNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGE 221 LMN +P+ +E+ + + Q H I ++P+SE D+ FL + G G+I+I E Sbjct: 2 LMNAVPILYEIQKALEDFVKTGQNHIIYTNKIPLSEEDKEFLLDVLGEGSIKIEYKSKRE 61 Query: 222 SYI--NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 YI T L VW D + P+LE EI P ++ A ED+ DS +RL ++ + Sbjct: 62 -YITFKETSLIGVWLGVVYDVERKPILEILEINSFPFMLQAPKEDIEDSIKRLKDILK 118 >UniRef50_B3DVL9 HupH hydrogenase expression protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DVL9_METI4 Length = 233 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 163 GLMNGLPLAHELLAHVRNPD--AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYG 220 GLMNG + E+ R D P I L LP+S AD+ L G G + I GYG Sbjct: 109 GLMNGPYILVEISRIAREHDFTTHPRVIPLNFLPLSLADQKLLDEKLGHGELTICIKGYG 168 Query: 221 ESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 + +I T R++W + + + +S EI IP ++ A ED+ ++ ++ + + Sbjct: 169 QCWIKNTPYRNIWWVEHLNVEGKSIFKSIEITSIPSLIRTAREDMERGLSKIEKLMEKMD 228 Query: 281 EAAP 284 P Sbjct: 229 HEIP 232 >UniRef50_B5ERL8 HupH hydrogenase expression protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERL8_ACIF5 Length = 138 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%) Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 + H I+L LP+S ADR L G G I++ G S I TG+ VW +R + Sbjct: 37 GRRHCIDLGSLPLSPADRDLLRETLGTGEIRMELEALGNSRIEETGVPGVWWVRHSSEDG 96 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSE 274 L ES E+C +PE+V A D+ +RL + Sbjct: 97 ILLTESLEVCHVPEIVPADTTDIAIGLRRLRQ 128 >UniRef50_B8GQG1 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQG1_THISH Length = 150 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 159 PPIDG--LMNGLP--LAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNI 212 P DG ++ G+ L E+ AH+ N ++ H+I+L LP++EADR L G G + Sbjct: 14 PEFDGEDVITGMADALLREIHAHLVNLHERSESHTIDLKGLPLTEADRRQLREALGRGEV 73 Query: 213 QIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRL 272 + G + T VW + + L L EI +P + PED+ D+ +RL Sbjct: 74 SMTVEAAGPTEAYETAYGGVWWIDYQNLLGSTALTHIEIARVPAIAPTHPEDIADALERL 133 Query: 273 SEVCQ 277 E Sbjct: 134 GEALN 138 >UniRef50_A8UUE6 Putative uncharacterized protein n=3 Tax=Aquificaceae RepID=A8UUE6_9AQUI Length = 133 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 15/124 (12%) Query: 165 MNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGES 222 MN +P+ E+L ++ + H I + ++PI+ DR + G G+++I Y +S Sbjct: 1 MNAVPILTEVLEALKEFLAKGEEHIIYINKVPITPEDREAILDTLGEGHVRI----YYDS 56 Query: 223 YI-----NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQ----RLS 273 TG+ VW D K P+LE+ EI P + A ED+ +S + RL Sbjct: 57 KTQPAEWRETGIYGVWIGIIYDREKKPVLETIEITDFPRLAAAQREDMEESVRVLEDRLK 116 Query: 274 EVCQ 277 EV + Sbjct: 117 EVAR 120 >UniRef50_B2ICM0 Putative uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2ICM0_BEII9 Length = 312 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 25/213 (11%) Query: 69 EVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK- 127 E + DL L D FI LLGEG ++ +I D +E++ W + R + Sbjct: 96 EEILFDLTELGTKDIQFIQHLLGEGRITGKIALTDGVVAEVRSTALTRAWEIVFRGPDGV 155 Query: 128 LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV------RNP 181 +LE L+ P L QAA L P D PL + H RN Sbjct: 156 ILEHFLQVDDLPRILRQAALATPLEFQEPARPDAD---PAFPLLKMIQFHAWHFEDKRNA 212 Query: 182 DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGE----------SYINATGLRH 231 P +++L +L A L + G G+I + +I + I +TG RH Sbjct: 213 VRDPLTLDLLKLE-DLATAQTLCEILGRGSIDL-SIKIADVDNPVSPIVSQRITSTGTRH 270 Query: 232 VWHLRCTDTLKGPLL-ESYEICPIP-EVVLAAP 262 VW L D KG LL ++ I +P ++LA+P Sbjct: 271 VWLLESFDA-KGTLLQQAVSIDDVPLAMMLASP 302 >UniRef50_A1HTR0 HupH hydrogenase expression protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTR0_9FIRM Length = 126 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 184 QPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGE-SYINATGLRHVWHLRCTDTLK 242 + H++ + ++ +++ADR + G G ++++ E + T + VW+ D + Sbjct: 30 ETHTLFINKMGLTQADREAIHAFLGQGTVRVQLNDTAEPAEWLETEIAGVWYGVFYDASR 89 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSA----QRLSEV 275 P+LE+ EI P V A PED+ + +RL+E+ Sbjct: 90 RPVLETIEISDFPRVAAAQPEDIAAKSAELRRRLTEL 126 >UniRef50_C8S1B1 HupH hydrogenase expression protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1B1_9RHOB Length = 132 Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 187 SINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLL 246 +++L LP++ ADR L G G + + G S I T VW LR Sbjct: 33 AVDLRSLPMTAADRAELETALGRGEVSVTLQSAGRSEIWETRFAGVWWLRHFGGDDRIAA 92 Query: 247 ESYEICPIPEVVLA-APEDLVDSAQRLSEVCQWLAEAA 283 E EI P+P++++ A E SA L+E+ EAA Sbjct: 93 EVIEIAPVPDILVTHADEITAASALMLAELASMTKEAA 130 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 72 AVDLLNL--NADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGE 126 AVDL +L A DR + T LG GEVSV +Q A SEI E F G+W +R G+ Sbjct: 33 AVDLRSLPMTAADRAELETALGRGEVSVTLQSA--GRSEIWETRFAGVWWLRHFGGD 87 >UniRef50_C5S7N4 HupH hydrogenase expression protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7N4_CHRVI Length = 155 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 8/125 (6%) Query: 166 NGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESY 223 + LP+ HE+ + + I+L +P D L+ + G G +Q R G + Sbjct: 26 HALPILHEIRHALERLLASGEETRIDLHSMPFGPGDLERLTAVLGSGEVQARVEALGPTL 85 Query: 224 INATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDS----AQRLSEVCQWL 279 I T + VW + L EI IPE++ PEDL +S RLSE L Sbjct: 86 IQETAIPGVWLVDYRGLEDQRLSYQIEIAAIPEILRPRPEDLAESLGALEDRLSE--SGL 143 Query: 280 AEAAP 284 AAP Sbjct: 144 DAAAP 148 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P19932 Hydrogenase-1 operon protein hyaF n=196 Tax=Ente... 371 e-101 UniRef50_B5F604 Hydrogenase-1 operon protein HyaF2 n=38 Tax=Salm... 338 9e-92 UniRef50_P31911 Hydrogenase expression/formation protein hoxQ n=... 336 6e-91 UniRef50_B2IJ35 HupH hydrogenase expression protein n=9 Tax=Alph... 309 5e-83 UniRef50_Q43957 Hydrogenase expression/formation protein hupQ n=... 308 1e-82 UniRef50_P40594 Hydrogenase expression/formation protein hoxQ n=... 305 2e-81 UniRef50_D2LGL6 HupH hydrogenase expression protein n=1 Tax=Rhod... 301 2e-80 UniRef50_C7I142 HupH hydrogenase expression protein n=1 Tax=Thio... 300 4e-80 UniRef50_A1KC55 Hydrogenase-1 operon protein hupH n=1 Tax=Azoarc... 300 4e-80 UniRef50_Q03007 Hydrogenase expression/formation protein hupH n=... 299 5e-80 UniRef50_Q478M1 HupH hydrogenase expression protein, C-terminal ... 298 1e-79 UniRef50_Q60CE7 Putative hydrogenase expression/formation protei... 298 2e-79 UniRef50_B2JX95 HupH hydrogenase expression protein n=1 Tax=Burk... 293 6e-78 UniRef50_A0P1N4 HupH hydrogenase expression/formation protein n=... 290 5e-77 UniRef50_Q0A722 HupH hydrogenase expression protein n=1 Tax=Alka... 285 2e-75 UniRef50_Q56363 HupH n=1 Tax=Thiocapsa roseopersicina RepID=Q563... 280 3e-74 UniRef50_P48340 Hydrogenase expression/formation protein hupH n=... 274 2e-72 UniRef50_P28150 Hydrogenase expression/formation protein hupH n=... 264 3e-69 UniRef50_Q9ANQ2 HupH protein n=1 Tax=Bradyrhizobium japonicum Re... 228 1e-58 UniRef50_Q2RV78 Hydrogenase expression/formation protein hupH n=... 214 3e-54 UniRef50_A5FVC8 HupH hydrogenase expression protein n=1 Tax=Acid... 203 7e-51 UniRef50_B3DVL9 HupH hydrogenase expression protein n=1 Tax=Meth... 177 5e-43 UniRef50_B2ICM0 Putative uncharacterized protein n=1 Tax=Beijeri... 164 3e-39 UniRef50_B4U667 HupH hydrogenase expression protein n=1 Tax=Hydr... 135 2e-30 UniRef50_B8GQG1 Putative uncharacterized protein n=1 Tax=Thioalk... 122 1e-26 UniRef50_A8UUE6 Putative uncharacterized protein n=3 Tax=Aquific... 118 3e-25 UniRef50_B5ERL8 HupH hydrogenase expression protein n=2 Tax=Acid... 117 4e-25 Sequences not found previously or not previously below threshold: UniRef50_Q3SJ38 Putative uncharacterized protein n=1 Tax=Thiobac... 88 4e-16 UniRef50_A1HTR0 HupH hydrogenase expression protein n=1 Tax=Ther... 84 4e-15 UniRef50_C5S7N4 HupH hydrogenase expression protein n=1 Tax=Allo... 83 9e-15 UniRef50_C8S1B1 HupH hydrogenase expression protein n=1 Tax=Rhod... 82 2e-14 UniRef50_A5EUI6 Putative uncharacterized protein n=1 Tax=Bradyrh... 77 5e-13 UniRef50_B3DWK8 Hydrogenase expression/formation protein hoxQ n=... 74 5e-12 UniRef50_B4S320 HupH hydrogenase expression protein n=1 Tax=Alte... 74 7e-12 UniRef50_D1BNA7 Putative uncharacterized protein n=3 Tax=Veillon... 71 5e-11 UniRef50_Q9ANQ3 ID32 n=1 Tax=Bradyrhizobium japonicum RepID=Q9AN... 46 0.001 >UniRef50_P19932 Hydrogenase-1 operon protein hyaF n=196 Tax=Enterobacteriaceae RepID=HYAF_ECOLI Length = 285 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 285/285 (100%), Positives = 285/285 (100%) Query: 1 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL Sbjct: 1 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 Query: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV Sbjct: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 Query: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN 180 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN Sbjct: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN 180 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT Sbjct: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT Sbjct: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 >UniRef50_B5F604 Hydrogenase-1 operon protein HyaF2 n=38 Tax=Salmonella enterica RepID=B5F604_SALA4 Length = 353 Score = 338 bits (868), Expect = 9e-92, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 137/283 (48%), Gaps = 3/283 (1%) Query: 4 TFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSER 63 ++ GPG+QP ++ F+ P+P + P + A +L L ++ Sbjct: 8 PVVNIAGPGSQPEEEDFNFLPIPAGINLPLTPVLPEQALPAELRVARHILTTLIRDMNNP 67 Query: 64 QPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRR 123 L L+ L + ++ LLGEGE+S R+ D E IQE +F G+WRVR Sbjct: 68 VATLPFPLSYKLNATEQQNSGLLDQLLGEGEISARVLLPDGKEQRIQETVFTGVWRVREY 127 Query: 124 RGEK-LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRNPD 182 ++ + D++ G P ++WQ Q P LPP GLMNG +AHE+ V P Sbjct: 128 NADQQRVADEIIIGPIPESIWQTHPQP--PITPELPPQPAGLMNGAFIAHEIAERVNQPV 185 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 +PH INLT LP+++ADR +L G G I + GYG+ I +T VW + + + Sbjct: 186 KEPHIINLTLLPVNDADREYLDHFLGEGCSAIFSRGYGKCRIVSTHFPGVWRVNYFNDMN 245 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 L + EI IP++ +A +D+ D+ L +WL E T Sbjct: 246 TLLQDMIEIADIPDIAVAGIDDIEDAYAGLKNTLEWLKEYPAT 288 >UniRef50_P31911 Hydrogenase expression/formation protein hoxQ n=6 Tax=Proteobacteria RepID=HOXQ_RALEH Length = 282 Score = 336 bits (861), Expect = 6e-91, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 138/275 (50%), Gaps = 6/275 (2%) Query: 8 LLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 LLGPG+Q D++ +P V P + EQ A Q ++L + L +R P Sbjct: 10 LLGPGSQAEDETLDYIHMPQGMSVYTPPVLPEPEQIACLTQAQSVLRAILDAL-DRADPK 68 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK 127 ++L L+ ++R + +LGEGEVS RI+ + + IQEA+F G+WRV + Sbjct: 69 QPNPRIELWALDEENRQLLKQVLGEGEVSARIE--GEYQVYIQEAVFAGVWRVVSTCPDA 126 Query: 128 LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDAQP 185 D +E G AP L AA + DG+MN + E+ + +P Sbjct: 127 T-TDYIEVGAAPEVLRGAARYGANQWSLDVGRVPDGVMNAPSILAEIDDQLLSWHPGKPV 185 Query: 186 HSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPL 245 H +NLT LP+S D FL G ++ I + GYG I++T + + W + ++ + Sbjct: 186 HVVNLTLLPMSPQDITFLDETLGAASVTILSRGYGNCRISSTAVPYCWRVVYFNSQDTTI 245 Query: 246 LESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 L + EI +PEV AAPEDL DS +RL+EV +W+ Sbjct: 246 LNTVEITDLPEVACAAPEDLRDSHERLTEVLKWVG 280 >UniRef50_B2IJ35 HupH hydrogenase expression protein n=9 Tax=Alphaproteobacteria RepID=B2IJ35_BEII9 Length = 295 Score = 309 bits (792), Expect = 5e-83, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 9 LGPGTQPNDDS--FSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 GPG+QP D +P P + + + Q IA L EL+ + Q Sbjct: 12 FGPGSQPQTDEDGLQYLAMPSGVTTYS-PHLPEIVDPLAARQAIAFLGELREAAT--QWT 68 Query: 67 LGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR--RR 124 G L L+A R +N LGEGEVSV ++ E+QE +F GLW +R Sbjct: 69 QGHSNIHKLETLDAACRLMVNDALGEGEVSVLLEDPTGR-IEVQETVFAGLWCLRALPAS 127 Query: 125 GEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAH--VRNPD 182 + L +++E P ++ A D P G++N + ELL H P Sbjct: 128 DTESLREQVEIAAFPRSVLSRAFPAARTMDLAALTPPSGIVNAPAILTELLEHSAAWRPG 187 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 A HSINLT LP + D F+ + G G + I + GYG I AT HVW +R +++ Sbjct: 188 AVSHSINLTLLPHTPEDLAFIDHVLGQGRVTILSRGYGNCRIEATATPHVWRVRYYNSMD 247 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAP 284 +L+ E+ +PEV AAPED+ DSAQRL+E+C+ L + A Sbjct: 248 TLILDMIEVVDVPEVACAAPEDIQDSAQRLAEICEALEQEAA 289 >UniRef50_Q43957 Hydrogenase expression/formation protein hupQ n=2 Tax=Gammaproteobacteria RepID=HUPQ_AZOCH Length = 284 Score = 308 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 13/279 (4%) Query: 9 LGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLG 68 GPG+ +D P+P + PS+ EQ P +ALL LQ L+ + +G Sbjct: 12 FGPGSHGEEDRLDYLPMPREMHTFERPSLPEPEQLDSHPIALALLERLQEALTAYR--IG 69 Query: 69 EVLAVDLLNLNA-DDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG-E 126 E V L+ D + +LGEGEV+ IQ IQE + G+W V+ + G Sbjct: 70 EQSRVIGLDRQPKADLKLLQQILGEGEVA--IQVGGQRPVRIQETVLAGVWWVQLQVGLG 127 Query: 127 KLLEDKLEAGCAPLALWQAA-TQNLLPTDSLLPPPIDGLMNGLPLAHELLA----HVRNP 181 +++ LE P + + A + P P D L+N P+ ELL H + Sbjct: 128 EVVGQWLEVADIPALVRRRAFAEARWPRLGATLP--DDLLNAGPVLVELLEAAKQHAEHA 185 Query: 182 DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTL 241 A PH INL+ LP S D+ FL+ G G + + + GYG I +T +W ++ ++ Sbjct: 186 SATPHVINLSLLPFSAEDQRFLAEQLGEGPVTVLSRGYGNCRIASTATPGIWRVQYFNST 245 Query: 242 KGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 +L++ E+ IP+ AA ED+ DSA+RL E+ + L Sbjct: 246 DRLILDTLEVTAIPQAACAAQEDIDDSAERLREIREALE 284 >UniRef50_P40594 Hydrogenase expression/formation protein hoxQ n=3 Tax=Azotobacter vinelandii RepID=HOXQ_AZOVI Length = 283 Score = 305 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 85/279 (30%), Positives = 137/279 (49%), Gaps = 14/279 (5%) Query: 9 LGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLG 68 GPG+ ++ +P + + P++ Q + P +ALL LQ L + +G Sbjct: 12 FGPGSHGEEERPDCPSMPRAMRRFERPALPEPGQLSGHPIALALLERLQEALGAYR--IG 69 Query: 69 EVLAVDLLNLNA-DDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG-E 126 E V L+ D + +LGEGEV+ IQ + IQE + G+W V+ + G Sbjct: 70 EQSRVIGLDRQPKADLKLLQQILGEGEVA--IQVGGQRPARIQETVLAGVWWVQLQIGRG 127 Query: 127 KLLEDKLEAGCAPLALWQAA-TQNLLPTDSLLPPPIDGLMNGLPLAHELLA----HVRNP 181 +++ LE P + + A + P LP DGL+N P+ ELL H Sbjct: 128 EVVGQWLEVADVPALVRRRAFAETRWPQLGELP---DGLLNAGPVLVELLDAAKRHAERA 184 Query: 182 DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTL 241 A PH++NL+ LP S DR FL+ G G++ + + GYG I +T +W ++ ++ Sbjct: 185 LATPHAVNLSLLPFSPEDRRFLAERLGEGSVTLLSRGYGNCRIASTATPGIWCVQYFNSS 244 Query: 242 KGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 +L++ E+ IP+V AA ED+ DSA+RL E+ + L Sbjct: 245 DRLILDTLEVTGIPQVACAAQEDIDDSAERLREIREALE 283 >UniRef50_D2LGL6 HupH hydrogenase expression protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL6_RHOVA Length = 280 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 145/276 (52%), Gaps = 11/276 (3%) Query: 7 HLLGPGTQPNDDS--FSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQ 64 L GPG+QP+D+ + LP P + E A + L+ L Sbjct: 6 PLAGPGSQPDDEDGDLAFMELPKGMATFSMPQIPEPEVAAAHAAALEKLDAALEALRA-A 64 Query: 65 PPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRR 124 P G + +DLL+L+AD+R F++ +LGEGEVS+ S + QE++ G+WR+ Sbjct: 65 PAPGTSITIDLLDLDADNRAFVDQMLGEGEVSI----VAGSHVQAQESVLAGVWRIHVVG 120 Query: 125 GEK-LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPI-DGLMNGLPLAHELLAHVRN-- 180 + L+ D +E G PL++ AA PT L D LMN +A EL + Sbjct: 121 SDGALIADAIEVGEFPLSVLAAAQDAGAPTLRALDAVAEDDLMNAPSIAAELADKLAAFA 180 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 P PH+INLT LP+S+ D +L G G + I + GYG I++TG+R+ W +R ++ Sbjct: 181 PGTPPHAINLTLLPVSDGDLAYLDARLGQGAVTILSRGYGNCRISSTGVRNAWWVRYFNS 240 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 + +L + E+C +P+V AA EDL DSA+RL+E+ Sbjct: 241 REILILNTIEVCRVPDVACAAREDLEDSAERLAEIL 276 >UniRef50_C7I142 HupH hydrogenase expression protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I142_THIIN Length = 285 Score = 300 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 90/274 (32%), Positives = 137/274 (50%), Gaps = 8/274 (2%) Query: 8 LLGPGTQP-NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 +GPG+QP D++ +P +D S+ E+ +V L ++L + R Sbjct: 11 AVGPGSQPIEDEALEYMAMPKEMFTHDLVSLPESEELRDRTRVRDLFDDLLA--TTRAYS 68 Query: 67 LGEV-LAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVR-RRR 124 +G+ +A DL L+A D +N +LG GEVSV + D+ QE++ G+WRVR Sbjct: 69 VGDKGIAHDLSQLDAADLDCLNQILGVGEVSVTLDLPGDTLL-AQESVLTGIWRVRQIDA 127 Query: 125 GEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPD 182 + +L+D LE G P A+ ++ T L PI G+ N L E+ + P Sbjct: 128 AQTVLDDHLEVGDVPHAVRSSSFGAAPGTALLPGAPIPGVQNAPALLVEIAEKMSTWTPG 187 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 Q H INLT LP++ D + L G G I + GYG I AT + +VW ++ ++ Sbjct: 188 DQAHVINLTLLPLTREDLIHLGSELGVGPATILSRGYGNCRIGATRMPNVWWVKYFNSQD 247 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 +L + EI +P V LAA EDL D+A RL E+ Sbjct: 248 ALILNTIEIVDVPAVALAAQEDLADTADRLHEIL 281 >UniRef50_A1KC55 Hydrogenase-1 operon protein hupH n=1 Tax=Azoarcus sp. BH72 RepID=A1KC55_AZOSB Length = 290 Score = 300 bits (767), Expect = 4e-80, Method: Composition-based stats. Identities = 87/271 (32%), Positives = 125/271 (46%), Gaps = 7/271 (2%) Query: 8 LLGPGTQPN-DDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 GPG+QP D++ PLP P + A +A L L + Sbjct: 15 AAGPGSQPEEDEALDYLPLPSGMDTFAPPRLPDHIDPASRATAVATLQGLLAAMRAWTFG 74 Query: 67 LGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR-RRG 125 VDL L+ IN LG+GEVS R+ ++E IQE +F G+WRV RG Sbjct: 75 TPGHPVVDLAPLDGASLALINDALGQGEVSARVL--GETELRIQETVFAGIWRVVETDRG 132 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDA 183 + L D++EA P + + + P P G+MN + +ELL V R P A Sbjct: 133 GRRLSDRIEACAMPAEVITRSLEAAQ-AAIAAPTPPQGVMNAPAVLNELLHAVATRRPGA 191 Query: 184 QPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243 H +NLT LP++ AD +L + G G I + GYG I AT L W ++ ++ Sbjct: 192 AAHIVNLTLLPMNPADLAWLVEVLGVGPTVILSRGYGNCRITATALARTWWVQYFNSADT 251 Query: 244 PLLESYEICPIPEVVLAAPEDLVDSAQRLSE 274 +L + E+ +P+V AA +D DS RL E Sbjct: 252 LILNTLEVTELPDVAPAAADDFGDSIARLEE 282 >UniRef50_Q03007 Hydrogenase expression/formation protein hupH n=8 Tax=Rhodobacteraceae RepID=HUPH_RHOCA Length = 275 Score = 299 bits (766), Expect = 5e-80, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 128/273 (46%), Gaps = 12/273 (4%) Query: 9 LGPGTQPN-DDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 GPG+QP D+ LP + + +E + + LL+E+ Sbjct: 12 FGPGSQPEGDEELGYMQLPSGMRTYSA-HLPEVEDSSAVTPALKLLDEI--AAGAEACAR 68 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK 127 G + + DL L+A +R I +G+GEV+++I+ +QE++F G+W V Sbjct: 69 GGMASFDLAGLDAQNRALIAETMGQGEVAMKIRGI--PALMVQESVFAGVWSVAGAG--- 123 Query: 128 LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAH-VRNPDAQPH 186 D++E G P A A + + LPP DG++N L EL Sbjct: 124 --VDRIEVGAVPAAALSRAFEPFRKGQTALPPLSDGVVNAPALIAELFDKSAAYVGGAAD 181 Query: 187 SINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLL 246 INLT LP +E D L + G G + I + GYG I AT HVW ++ ++ +L Sbjct: 182 VINLTLLPHTEEDLTLLDYMLGEGAVTILSRGYGNCRITATATPHVWRVQFYNSTDALIL 241 Query: 247 ESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWL 279 ++ E+ +PEV LAA EDL DSA R+ EV + + Sbjct: 242 DTIEVTTMPEVALAAREDLEDSAGRIREVLEAI 274 >UniRef50_Q478M1 HupH hydrogenase expression protein, C-terminal conserved region n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M1_DECAR Length = 287 Score = 298 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 130/279 (46%), Gaps = 13/279 (4%) Query: 8 LLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 +GPG+Q D++ P+P + +P + +P+V+ L ++ Sbjct: 15 AMGPGSQ-GDETPDYLPMPKGMETFSQPRLPDNV----APEVVNRAASLLGTFADEAERF 69 Query: 68 GEVLA--VDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG 125 G A ++LL+L+A R IN +G GEVS + +QE F GLWRV + Sbjct: 70 GFEGAARLELLDLDATMRDVINQSMGFGEVSAFTTAP--AHWRVQETAFSGLWRVLKVAD 127 Query: 126 EK-LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHEL--LAHVRNPD 182 + ++ D LE G P A+ A + D P G MN L E+ A Sbjct: 128 DGAMMVDHLETGSVP-AVLTEAMVSTSTADLPPPDYPAGCMNAQALVEEIRMQAAAWKAG 186 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 H INLT LP+S+AD L G + I + GYG I +T L++VW ++ +++ Sbjct: 187 DSAHVINLTLLPVSDADLDTLYGWLGHREVSILSRGYGNCRITSTRLKNVWWVQYFNSMD 246 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAE 281 +L S EI +PEV LAA ED DS +RL E + E Sbjct: 247 TLILNSIEIVGMPEVALAADEDFSDSVERLREYLDMMVE 285 >UniRef50_Q60CE7 Putative hydrogenase expression/formation protein n=1 Tax=Methylococcus capsulatus RepID=Q60CE7_METCA Length = 278 Score = 298 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 15/282 (5%) Query: 6 FHLLGPGTQP-----NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 F + G P +D + P+P P + AL + + + A+L ++ +L Sbjct: 5 FAFIATGNTPLFRLHDDPECTCPPMPEAMATFTPPPLHALSR-DETGEGCAVLQKVIERL 63 Query: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 G VDL + R F++ +LGEGEV +RI D + I+E++F G+WRV Sbjct: 64 G------GAPGIVDLAPCDPAARRFVDEVLGEGEVLIRIVTPRDRVT-IRESVFAGVWRV 116 Query: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP-IDGLMNGLPLAHELLAHVR 179 + R +L D LE G P A++ A + + P +GLMN L E+ H Sbjct: 117 QHRIDGELRRDDLETGPVPEAVYGWAERLTVDGPPHRPQSFPEGLMNAPALLTEIFDHSA 176 Query: 180 N-PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCT 238 + P+ +PH INL+ LP++ D FL G + + + GYG+ + T L +VW ++ Sbjct: 177 DCPNDRPHVINLSLLPLTPEDSKFLIDTLGTAGLSVLSRGYGDCRVTLTRLPNVWWVQYF 236 Query: 239 DTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 ++ +L + EI +P VV AAPEDL DS +R++E L Sbjct: 237 NSPGQLILNTLEITRLPAVVAAAPEDLEDSRERIAEALAQLK 278 >UniRef50_B2JX95 HupH hydrogenase expression protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX95_BURP8 Length = 292 Score = 293 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 137/290 (47%), Gaps = 16/290 (5%) Query: 4 TFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSER 63 + GPG+ P D++S PLP T ++ + + V+ALL + L + Sbjct: 8 SIIRAAGPGSLPEPDNWSCLPLPSTSEIWRTTATPEH----GAGDVLALLRAMVTAL-DG 62 Query: 64 QPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSES------EIQEAIFCGL 117 P L + L AD + ++GEGEVS R+ + + + IQE + G+ Sbjct: 63 NPSPAHPLVFRVGTLGADAHRLLAQIMGEGEVSARVVSSRGTRAHAGALVRIQECRYPGI 122 Query: 118 WRVRRRRGEKL-LEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLA 176 WR+ + ++D++E G P A+ A + ++ L + +A E+ A Sbjct: 123 WRIIVDSANGVRIDDRIEIGAIPAAILYEARHSGTTQGTIPDTSSHKLTSAPSIASEIAA 182 Query: 177 H----VRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHV 232 V A H IN + LP++ AD +L + G G + I + GY + + AT RHV Sbjct: 183 AQARAVSRRGAGSHVINFSLLPVTPADVAWLDNMLGAGTVSIFSTGYCKCTVIATTWRHV 242 Query: 233 WHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEA 282 W +R D LL++ I IPE+V+AA EDL+DS + L E+ +WL E Sbjct: 243 WRVRYFDGSNKVLLDTLNIALIPEMVIAAAEDLMDSLRHLREIVKWLEED 292 >UniRef50_A0P1N4 HupH hydrogenase expression/formation protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N4_9RHOB Length = 277 Score = 290 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 129/281 (45%), Gaps = 11/281 (3%) Query: 1 MSETFFHLLGPGTQPNDDS---FSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQ 57 MS ++GPG+QP D+ +P + P++ E+ E Sbjct: 1 MSNPIGPVVGPGSQPLDEDGGVLDYMSMPSGMMIFAAPNLPEAEEAEDL-DAGKAALEAL 59 Query: 58 HQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGL 117 +L E G VDL L+ + +N +LGEGEVSV + + QEA+ G+ Sbjct: 60 LRLLEDSERTGTNGRVDLNGLDEANLALVNQVLGEGEVSV----IGGAALQAQEAVLAGV 115 Query: 118 WRVRRRRGE-KLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLA 176 WRVR + + D +E P + A + + N PL E+ Sbjct: 116 WRVRETAADGRTTADYVEVAAFPRTVLARAFAGAQAQVPIPERFGPNVFNAPPLLPEINE 175 Query: 177 HVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLR 236 H+ ++PH INL+ LP +E D L+ L G G I + GYG I AT R W ++ Sbjct: 176 HI--AKSRPHVINLSLLPHTEEDLGLLNDLLGRGETTILSRGYGNCRIMATATRDTWWVQ 233 Query: 237 CTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 ++ +L + EICPIP V AAPED+ DSA+RL+E+ + Sbjct: 234 FYNSQDTMILNTIEICPIPAVACAAPEDIADSAERLNEILE 274 >UniRef50_Q0A722 HupH hydrogenase expression protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A722_ALHEH Length = 278 Score = 285 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 10/273 (3%) Query: 7 HLLGP-GTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQP 65 L GP G+ + P+P + E + + L + QP Sbjct: 11 PLSGPAGSGFEEPGLDYLPMPKGMGTFSPAVLPDPEVLSDREGTLRCLESVIAGARRWQP 70 Query: 66 PLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG 125 + +D+ L+ +R ++ +LG+GEVS R+ QE++F G+WRV Sbjct: 71 DE-RNIHLDVSTLSDAERRLLDEVLGDGEVSARLP---GHGVVAQESVFAGVWRVADAAA 126 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN-PDAQ 184 + D+LE G P L A + P L +G+MN + EL H+ + Sbjct: 127 GR---DRLEIGPVPDCLLNAFAEA-SPAPRLPEQWPEGVMNAPGVLSELTEHLDVLSNNG 182 Query: 185 PHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGP 244 H INL+ LP++ D L G + + GYG + AT VW ++ +++ Sbjct: 183 RHVINLSLLPLTPEDHECLDEALGRSETAVLSRGYGNCRVTATMTAGVWWVQYFNSVDVL 242 Query: 245 LLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 +L + E+ +P+VV AAPED+ DSA R++EV + Sbjct: 243 ILNTLEVVAVPDVVCAAPEDIADSADRVAEVLE 275 >UniRef50_Q56363 HupH n=1 Tax=Thiocapsa roseopersicina RepID=Q56363_THIRO Length = 284 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 6/266 (2%) Query: 17 DDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDLL 76 DD +P P + E + LL + + +DL Sbjct: 23 DDGPDYLSMPKGMATYQAPLLPEPELLEGCTAGLELLRNCKGPCRDIAS--AGRTVLDLG 80 Query: 77 NLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAG 136 L+ +R ++ LGEGEVSV Q + QE G+WR+ ++ +E Sbjct: 81 PLDLVNRRLVDQTLGEGEVSVIEQGLQGT--RAQETRLAGVWRLEVPASATARDELIEVA 138 Query: 137 CAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDAQPHSINLTQLP 194 P + ++A + T + + DG+MN L E+ A V P H INLT LP Sbjct: 139 EIPRFVRESAFIGTIETIAPVAHLADGVMNAPALIAEIEAKVAEWRPGDSAHIINLTLLP 198 Query: 195 ISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPI 254 ++E D +L G G++ I + GYG I A+G+R VW ++ ++ +L + E+ + Sbjct: 199 MTEQDHAYLDERLGRGHVTILSRGYGSCRIVASGIRQVWWVQHFNSDDRLILSTLEVTDV 258 Query: 255 PEVVLAAPEDLVDSAQRLSEVCQWLA 280 P LAA ED+ DS RL+E+ + L Sbjct: 259 PIAALAAQEDIDDSRDRLAEILEALG 284 >UniRef50_P48340 Hydrogenase expression/formation protein hupH n=11 Tax=Bradyrhizobiaceae RepID=HUPH_BRAJA Length = 287 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 6/245 (2%) Query: 36 SMAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEV 95 ++ + E P +ALL+ + ++ ++ L L NLN + I +LGEGEV Sbjct: 44 TLDSAELARSCPNAVALLSRIADAIAGQKADAPSQL-FRLANLNDLESKLIADVLGEGEV 102 Query: 96 SVRIQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDS 155 + + D S ++IQE++ G+WRVR + LE G P + +AA +L D Sbjct: 103 AGVVALPDGSLAQIQESVLAGIWRVRLETDAN--HEYLEIGAVPEIVKRAAA-DLTSADF 159 Query: 156 LLPPPIDGLMNGLPLAHELLAHV--RNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQ 213 + +G MN LP+ E+ P + IN T LP+S D FL G IQ Sbjct: 160 EIGQVPEGAMNVLPVLAEIRERALAWRPGIRSQIINFTLLPMSPVDMSFLQDTIRNGPIQ 219 Query: 214 IRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLS 273 + + GYG + +TG+R+VW ++ + + +L++ E+ +P V LAA ED DSA+RL Sbjct: 220 LVSRGYGTCRVLSTGIRNVWSVQFFNAMDTIILDTLEVGGVPTVALAADEDFEDSAERLK 279 Query: 274 EVCQW 278 E+ + Sbjct: 280 EIIEA 284 >UniRef50_P28150 Hydrogenase expression/formation protein hupH n=3 Tax=Rhizobium RepID=HUPH_RHILV Length = 282 Score = 264 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 126/274 (45%), Gaps = 13/274 (4%) Query: 15 PNDDSFSMNPLPITCQVNDEPS-------MAALEQCAHSPQVIALLNELQHQLSERQPPL 67 P + +M +PI + +A E + LL EL L+ ++ Sbjct: 9 PEGEGAAMTVMPIGAEPPLRARKLNFLATSSAEEMIRRCRRTAMLLPELADALAVQKAEQ 68 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR-RRGE 126 L D+ + DDR I LGEGEV+ A+ +++QEA+ G+WR+R Sbjct: 69 PGRL-FDITDFPDDDRELITQTLGEGEVAGVAALANGVTAQMQEAVMAGVWRIRFTDVDG 127 Query: 127 KLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN--PDAQ 184 +L+ D +E P A+ QA + LP P G MN +P+ E+ + Sbjct: 128 RLIADYIEVASIPAAVRQAC--SGLPASISHGPAPAGAMNVMPVLTEIGDRIARYRDGDP 185 Query: 185 PHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGP 244 H I + P+S D FL G G +Q+ + GYG + ATG R+VW ++ + + Sbjct: 186 AHVITFSLFPMSPEDMAFLQDALGAGPVQLTSRGYGTCRVVATGARNVWSVQFYNAMDTI 245 Query: 245 LLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQW 278 +L++ E+C IP V +AA ED DS RL ++ + Sbjct: 246 ILDTLEVCNIPSVAIAAEEDFRDSEARLRDIWEA 279 >UniRef50_Q9ANQ2 HupH protein n=1 Tax=Bradyrhizobium japonicum RepID=Q9ANQ2_BRAJA Length = 183 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 5/182 (2%) Query: 99 IQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLP 158 + D S ++I+E++ G+WRVR G + + +E G P + +AAT +L T+ L+ Sbjct: 2 VALPDGSLAQIRESVHAGIWRVRI--GTEPAHEYVEVGAIPQIVRRAAT-DLTSTELLID 58 Query: 159 PPIDGLMNGLPLAHELLAH--VRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRT 216 P DG MN P+ E+ V H INLT LP+S D FL + G G +Q+ Sbjct: 59 TPPDGAMNVQPVLAEIRERASVWQFCMNAHVINLTLLPMSVVDLTFLQQSLGNGPVQLML 118 Query: 217 IGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 GYG + ATG R+VW ++ ++ +L++ E+ +P V LAA ED DSA R+ E+ Sbjct: 119 RGYGACRVQATGTRNVWSVQFFNSTDNIILDTVEVGGVPIVALAADEDFQDSAGRVQEIL 178 Query: 277 QW 278 + Sbjct: 179 EA 180 >UniRef50_Q2RV78 Hydrogenase expression/formation protein hupH n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RV78_RHORT Length = 258 Score = 214 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 104/247 (42%), Gaps = 15/247 (6%) Query: 42 QCAHSPQVIALLNELQHQLSERQP---PLGEVLAVDLLNLNADDRHFINTLLGEGEVSVR 98 A + AL L ER P+ DL +A R I+ LLGEGEV+ Sbjct: 14 DSAAERALRALFAGCITALEERASGAVPVERPALFDLAAFDAVGRARIDGLLGEGEVAGL 73 Query: 99 IQQA-DDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLL 157 + + + ++EA+ GLWR+ G ++ LE G P A+ AA P D+ Sbjct: 74 VDRPVEGGALALREAVVPGLWRIA--GGGRV---HLEVGDIPGAVRAAAAWGNEPPDAER 128 Query: 158 PPP-IDGLMNGLPLAHELLAHVRNPDAQ-----PHSINLTQLPISEADRLFLSRLCGPGN 211 G+MN L E+ HVR PH I LT P+S D L+R+ G G Sbjct: 129 VVRGQPGVMNARALLDEIARHVRRVGDDLSHEPPHEIILTHTPLSAGDNALLARVLGNGG 188 Query: 212 IQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQR 271 + + G + T HVW + ++ +L EI +P V A ED DSA+R Sbjct: 189 VTLVAGGRTTCKVTLTACAHVWRVEHFNSEDRLILHGLEIGDVPAAVRATAEDCGDSARR 248 Query: 272 LSEVCQW 278 L + Sbjct: 249 LRALIDA 255 >UniRef50_A5FVC8 HupH hydrogenase expression protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FVC8_ACICJ Length = 276 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 110/261 (42%), Gaps = 15/261 (5%) Query: 20 FSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLN 79 LP V PS+ A + A L + E V + L + Sbjct: 17 PDYLALPTEMHVFRAPSLPD--DPAARARCRAWLQRI-GAALEAAASGAAVGQIVLDEAS 73 Query: 80 ADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRR-RGEKLLEDKLEAGCA 138 A D ++ +L +GEVS + A E +I E + GLWR+R R D+LE G Sbjct: 74 AADCASLDEILLDGEVSALVLGA--PEWQIGETAYTGLWRLRARDAATGRRLDRLEIGPI 131 Query: 139 PLALWQAATQNL----LPTDSLLPPPIDGLMNGLPLAHELLA--HVRNPDAQPHSINLTQ 192 P + A + LP +PP ++N + EL A P H INL Sbjct: 132 PAVVAARAAASWGLMELPAPEAIPPE---MVNAPHVLAELRARSAAFRPGGAAHVINLGL 188 Query: 193 LPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEIC 252 LP++EA+ +L R G G I + GYG I +T L W ++ + +L + EI Sbjct: 189 LPLAEAELTWLVRTLGEGPAIILSGGYGTCRIRSTRLAGTWWVQYYNAADALILNTLEIA 248 Query: 253 PIPEVVLAAPEDLVDSAQRLS 273 +P V AA +D+ +SA R+ Sbjct: 249 AVPAVACAAQDDVAESASRVR 269 >UniRef50_B3DVL9 HupH hydrogenase expression protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DVL9_METI4 Length = 233 Score = 177 bits (448), Expect = 5e-43, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 83/212 (39%), Gaps = 11/212 (5%) Query: 78 LNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGC 137 ++ LL GEV + + E+ GLW + +L LE G Sbjct: 27 CGNRGSELLSYLLEGGEVEMHFGRNSGRVVF--ESKIPGLW--ATWQSGELKC--LEVGE 80 Query: 138 APLALWQAATQNLLPTDSLLPPPI---DGLMNGLPLAHELLAHVRNPD--AQPHSINLTQ 192 P L + L L GLMNG + E+ R D P I L Sbjct: 81 LPTLLLEVQGDLPLIPSFNLGELSTIRPGLMNGPYILVEISRIAREHDFTTHPRVIPLNF 140 Query: 193 LPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEIC 252 LP+S AD+ L G G + I GYG+ +I T R++W + + + +S EI Sbjct: 141 LPLSLADQKLLDEKLGHGELTICIKGYGQCWIKNTPYRNIWWVEHLNVEGKSIFKSIEIT 200 Query: 253 PIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAP 284 IP ++ A ED+ ++ ++ + + P Sbjct: 201 SIPSLIRTAREDMERGLSKIEKLMEKMDHEIP 232 >UniRef50_B2ICM0 Putative uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2ICM0_BEII9 Length = 312 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 88/237 (37%), Gaps = 23/237 (9%) Query: 45 HSPQVIALLNELQHQLSERQPPLG--EVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA 102 S LL+ L L E E + DL L D FI LLGEG ++ +I Sbjct: 70 CSTAGKRLLDRLAIALLEGVDDGNDEEEILFDLTELGTKDIQFIQHLLGEGRITGKIALT 129 Query: 103 DDSESEIQEAIFCGLWRVRRRRGEKL-LEDKLEAGCAPLALWQAATQNLLPTDSLLPPPI 161 D +E++ W + R + + LE L+ P L QAA L P Sbjct: 130 DGVVAEVRSTALTRAWEIVFRGPDGVILEHFLQVDDLPRILRQAALATPLEFQEPARPDA 189 Query: 162 DGLMNGLPLAHELLAHVR------NPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIR 215 D PL + H N P +++L +L A L + G G+I + Sbjct: 190 D---PAFPLLKMIQFHAWHFEDKRNAVRDPLTLDLLKLE-DLATAQTLCEILGRGSIDLS 245 Query: 216 TI---------GYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIP-EVVLAAP 262 I +TG RHVW L D L ++ I +P ++LA+P Sbjct: 246 IKIADVDNPVSPIVSQRITSTGTRHVWLLESFDAKGTLLQQAVSIDDVPLAMMLASP 302 >UniRef50_B4U667 HupH hydrogenase expression protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U667_HYDS0 Length = 129 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 164 LMNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGE 221 LMN +P+ +E+ + + Q H I ++P+SE D+ FL + G G+I+I E Sbjct: 2 LMNAVPILYEIQKALEDFVKTGQNHIIYTNKIPLSEEDKEFLLDVLGEGSIKIEYKSKRE 61 Query: 222 SYIN--ATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 YI T L VW D + P+LE EI P ++ A ED+ DS +RL ++ + Sbjct: 62 -YITFKETSLIGVWLGVVYDVERKPILEILEINSFPFMLQAPKEDIEDSIKRLKDILK 118 >UniRef50_B8GQG1 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQG1_THISH Length = 150 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 158 PPPIDG--LMNGLP--LAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGN 211 P DG ++ G+ L E+ AH+ N ++ H+I+L LP++EADR L G G Sbjct: 13 APEFDGEDVITGMADALLREIHAHLVNLHERSESHTIDLKGLPLTEADRRQLREALGRGE 72 Query: 212 IQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQR 271 + + G + T VW + + L L EI +P + PED+ D+ +R Sbjct: 73 VSMTVEAAGPTEAYETAYGGVWWIDYQNLLGSTALTHIEIARVPAIAPTHPEDIADALER 132 Query: 272 LSEVCQ 277 L E Sbjct: 133 LGEALN 138 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 46 SPQVIALLNELQHQLSE-RQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADD 104 + ALL E+ L + + + L L DR + LG GEVS+ ++ A Sbjct: 23 TGMADALLREIHAHLVNLHERSESHTIDLKGLPLTEADRRQLREALGRGEVSMTVEAAGP 82 Query: 105 SESEIQEAIFCGLWRVRRRR-GEKLLEDKLEAGCAPLA 141 +E+ E + G+W + + +E P Sbjct: 83 TEAY--ETAYGGVWWIDYQNLLGSTALTHIEIARVPAI 118 >UniRef50_A8UUE6 Putative uncharacterized protein n=3 Tax=Aquificaceae RepID=A8UUE6_9AQUI Length = 133 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 15/131 (11%) Query: 165 MNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGES 222 MN +P+ E+L ++ + H I + ++PI+ DR + G G+++I Y +S Sbjct: 1 MNAVPILTEVLEALKEFLAKGEEHIIYINKVPITPEDREAILDTLGEGHVRI----YYDS 56 Query: 223 YI-----NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQ----RLS 273 TG+ VW D K P+LE+ EI P + A ED+ +S + RL Sbjct: 57 KTQPAEWRETGIYGVWIGIIYDREKKPVLETIEITDFPRLAAAQREDMEESVRVLEDRLK 116 Query: 274 EVCQWLAEAAP 284 EV + +P Sbjct: 117 EVARLAQGDSP 127 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 48 QVIALLNELQHQLSERQPPLGEVLAV-DLLNLNADDRHFINTLLGEGEVSVRIQQADDSE 106 + +L E+ L E E + + + + +DR I LGEG V + Sbjct: 2 NAVPILTEVLEALKEFLAKGEEHIIYINKVPITPEDREAILDTLGEGHVRIYYDSKTQP- 60 Query: 107 SEIQEAIFCGLW-RVRRRRGEKLLEDKLEAGCAPL 140 +E +E G+W + R +K + + +E P Sbjct: 61 AEWRETGIYGVWIGIIYDREKKPVLETIEITDFPR 95 >UniRef50_B5ERL8 HupH hydrogenase expression protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERL8_ACIF5 Length = 138 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 170 LAHELLAHVRNP--DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINAT 227 L E+ A + + H I+L LP+S ADR L G G I++ G S I T Sbjct: 22 LLQEIAAALDVLLLSGRRHCIDLGSLPLSPADRDLLRETLGTGEIRMELEALGNSRIEET 81 Query: 228 GLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSE 274 G+ VW +R + L ES E+C +PE+V A D+ +RL + Sbjct: 82 GVPGVWWVRHSSEDGILLTESLEVCHVPEIVPADTTDIAIGLRRLRQ 128 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 37 MAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEGE 94 + + + ALL E+ L + G +DL L L+ DR + LG GE Sbjct: 7 IPIHPAPSPAANAPALLQEIAAAL-DVLLLSGRRHCIDLGSLPLSPADRDLLRETLGTGE 65 Query: 95 VSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK-LLEDKLEAGCAPLAL 142 + R++ S I+E G+W VR + LL + LE P + Sbjct: 66 I--RMELEALGNSRIEETGVPGVWWVRHSSEDGILLTESLEVCHVPEIV 112 >UniRef50_Q3SJ38 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJ38_THIDA Length = 136 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 2/114 (1%) Query: 147 TQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLS 204 T+ ++P P N LPL E+ H+ + + +I+L+ LP++ D +L Sbjct: 2 TREIIPILPEAPVETARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLR 61 Query: 205 RLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVV 258 G G + + G S ++ T VW + + + E+ +PE+V Sbjct: 62 AELGGGEVSVTLHADGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELV 115 Score = 57.4 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 7/120 (5%) Query: 29 CQVNDEPSMAA-LEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHF 85 P + + A S + LL E+ L GE +DL L L D + Sbjct: 1 MTREIIPILPEAPVETARSGNALPLLREIAEHLHHLLET-GEASTIDLSALPLTPGDLEW 59 Query: 86 INTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK-LLEDKLEAGCAPLALWQ 144 + LG GEVS + D S + E F G+W + R + + +E P + Sbjct: 60 LRAELGGGEVS--VTLHADGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKS 117 >UniRef50_A1HTR0 HupH hydrogenase expression protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTR0_9FIRM Length = 126 Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 167 GLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQI-RTIGYGESY 223 + E+ A + + H++ + ++ +++ADR + G G +++ + Sbjct: 11 ARAVLTEIAAALERFARTGETHTLFINKMGLTQADREAIHAFLGQGTVRVQLNDTAEPAE 70 Query: 224 INATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDL----VDSAQRLSEV 275 T + VW+ D + P+LE+ EI P V A PED+ + +RL+E+ Sbjct: 71 WLETEIAGVWYGVFYDASRRPVLETIEISDFPRVAAAQPEDIAAKSAELRRRLTEL 126 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 41 EQCAHSPQVIALLNELQHQL-SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRI 99 +Q S A+L E+ L + L ++ + L DR I+ LG+G V V++ Sbjct: 3 QQANISAHARAVLTEIAAALERFARTGETHTLFINKMGLTQADREAIHAFLGQGTVRVQL 62 Query: 100 QQADDSESEIQEAIFCGLWR-VRRRRGEKLLEDKLEAGCAPLALWQAATQN 149 + +E E G+W V + + + +E P AA Q Sbjct: 63 NDTAEP-AEWLETEIAGVWYGVFYDASRRPVLETIEISDFPRV---AAAQP 109 >UniRef50_C5S7N4 HupH hydrogenase expression protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7N4_CHRVI Length = 155 Score = 83.2 bits (204), Expect = 9e-15, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 167 GLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 LP+ HE+ + + I+L +P D L+ + G G +Q R G + I Sbjct: 27 ALPILHEIRHALERLLASGEETRIDLHSMPFGPGDLERLTAVLGSGEVQARVEALGPTLI 86 Query: 225 NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 T + VW + L EI IPE++ PEDL +S L + Sbjct: 87 QETAIPGVWLVDYRGLEDQRLSYQIEIAAIPEILRPRPEDLAESLGALEDRL 138 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 45 HSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEGEVSVRIQQA 102 + +L+E++H L ER GE +DL + D + +LG GEV R++ Sbjct: 23 EHGHALPILHEIRHAL-ERLLASGEETRIDLHSMPFGPGDLERLTAVLGSGEVQARVEAL 81 Query: 103 DDSESEIQEAIFCGLWRVRRRR-GEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPI 161 + IQE G+W V R ++ L ++E P L +L Sbjct: 82 GPTL--IQETAIPGVWLVDYRGLEDQRLSYQIEIAAIPEILRPRPEDLAESLGALEDRLS 139 Query: 162 DGLMNGLP 169 + ++ Sbjct: 140 ESGLDAAA 147 >UniRef50_C8S1B1 HupH hydrogenase expression protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1B1_9RHOB Length = 132 Score = 81.7 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 167 GLPLAHELLAHVRNPDAQP--HSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 + E+ + A +++L LP++ ADR L G G + + G S I Sbjct: 11 AQSILREVARALAALAATGARDAVDLRSLPMTAADRAELETALGRGEVSVTLQSAGRSEI 70 Query: 225 NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDL-VDSAQRLSEVCQWLAEAA 283 T VW LR E EI P+P++++ +++ SA L+E+ EAA Sbjct: 71 WETRFAGVWWLRHFGGDDRIAAEVIEIAPVPDILVTHADEITAASALMLAELASMTKEAA 130 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 72 AVDL--LNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG-EKL 128 AVDL L + A DR + T LG GEVSV +Q A SEI E F G+W +R G +++ Sbjct: 33 AVDLRSLPMTAADRAELETALGRGEVSVTLQSAG--RSEIWETRFAGVWWLRHFGGDDRI 90 Query: 129 LEDKLEAGCAPLAL 142 + +E P L Sbjct: 91 AAEVIEIAPVPDIL 104 >UniRef50_A5EUI6 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EUI6_BRASB Length = 133 Score = 77.4 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 169 PLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINA 226 L E+LA + + + + I+L +LP+ + G G + G G Sbjct: 15 ALFAEILAKLESLLATGETNRIDLRRLPLPADGLHKIRDFLGEGEVHATVRGVGSCIFQE 74 Query: 227 TGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLS 273 T VW + +T + E E+ +PE++ + ++ DS + L Sbjct: 75 TRTYGVWWMTQRNTAGDVIGEFIEVARVPELLKSGDVEIRDSVEDLR 121 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 37 MAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEGE 94 MA A + AL E+ +L GE +DL L L AD H I LGEGE Sbjct: 1 MAGHVTSAAEAMIRALFAEILAKLESLLAT-GETNRIDLRRLPLPADGLHKIRDFLGEGE 59 Query: 95 VSVRIQQADDSESEIQEAIFCGLWRVRRR-RGEKLLEDKLEAGCAPLALWQ 144 V ++ QE G+W + +R ++ + +E P L Sbjct: 60 VHATVRGVGSCI--FQETRTYGVWWMTQRNTAGDVIGEFIEVARVPELLKS 108 >UniRef50_B3DWK8 Hydrogenase expression/formation protein hoxQ n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWK8_METI4 Length = 269 Score = 74.0 bits (180), Expect = 5e-12, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 15/236 (6%) Query: 50 IALLNELQHQLSERQPPLGEV-LAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESE 108 + LL E+ L R GE L DL + +LG GE+ + + + Sbjct: 39 LDLLKEIAGAL--RLVIRGEKNLLFDLSKVAQIQVEHYFRVLGLGELCIFHPKVL-TVYA 95 Query: 109 IQEAIFCGLWRVRR-RRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGL--M 165 Q+ F G+W V + R ++ +E G P + + + D G + Sbjct: 96 AQQTSFPGVWWVEKKERKKEGSSLHIEVGRIPHFVLSEREERVEKPDLKALLCSLGSSGI 155 Query: 166 NGLPLAHELLAHV--RNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESY 223 + L+++ D + I L+ LP+S D L L + + + +++ Sbjct: 156 SLQAFVSSLVSYACGEGADREEKKIYLSLLPLSIQDIKTLFWLLPKTDFTLYSQKQ-KAW 214 Query: 224 INATGLRHVWHLRCTDTLKGPLLE---SYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 + T +++W + + + + +CP P + DL SA+RL ++ Sbjct: 215 VFGTPWKNIWWIE--EATDPEINQKSLGLLVCPFPYSLFPGTLDLSISARRLEKMV 268 >UniRef50_B4S320 HupH hydrogenase expression protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S320_ALTMD Length = 144 Score = 73.6 bits (179), Expect = 7e-12, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 161 IDGLMNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG 218 D N +PL H++ + + +I+L +LP+S ++ L G G ++ Sbjct: 12 ADKTGNVMPLLHQIRHALSQLIERQEQTTIDLRRLPLSASEEAQLEAFLGHGEVKADIQA 71 Query: 219 YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQW 278 G++ + + VW + + + IC P ++ + PED+V S + Sbjct: 72 LGDTVLIESRYAGVWLEIHYNEDVEIMGKYVHICTCPPIIKSQPEDMVLSLSNIVSDIHS 131 Query: 279 LAEA 282 L+ Sbjct: 132 LSHQ 135 >UniRef50_D1BNA7 Putative uncharacterized protein n=3 Tax=Veillonella RepID=D1BNA7_VEIPT Length = 125 Score = 70.5 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 3/118 (2%) Query: 166 NGLPLAHELLAHVR--NPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQI-RTIGYGES 222 N + +EL ++ + +SI + + ++E +++ + G G+I I Sbjct: 7 NVRAVLNELRLALKNLRETGETYSIYIEKTGLTEEEQVEVLETLGRGHITINFNETDQPV 66 Query: 223 YINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 + +W + +L + EI P V A ED+ + + L Sbjct: 67 EWYESQFSGIWIGTYKNGRDDSILHTVEIAKYPVVAGAYIEDMELAEEDLQSWIDAAG 124 >UniRef50_Q9ANQ3 ID32 n=1 Tax=Bradyrhizobium japonicum RepID=Q9ANQ3_BRAJA Length = 151 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 41 EQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSV 97 E+ P L++ + + ++ L L N + +R I+ LLGEGEV+ Sbjct: 47 ERARKYPNAALLMSNVAAAVGGQRSGDPTQL-YGLANFSDAERKLIDELLGEGEVTG 102 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P19932 Hydrogenase-1 operon protein hyaF n=196 Tax=Ente... 324 2e-87 UniRef50_P31911 Hydrogenase expression/formation protein hoxQ n=... 319 8e-86 UniRef50_B5F604 Hydrogenase-1 operon protein HyaF2 n=38 Tax=Salm... 313 4e-84 UniRef50_B2IJ35 HupH hydrogenase expression protein n=9 Tax=Alph... 295 9e-79 UniRef50_Q478M1 HupH hydrogenase expression protein, C-terminal ... 294 2e-78 UniRef50_Q43957 Hydrogenase expression/formation protein hupQ n=... 293 4e-78 UniRef50_C7I142 HupH hydrogenase expression protein n=1 Tax=Thio... 289 8e-77 UniRef50_A1KC55 Hydrogenase-1 operon protein hupH n=1 Tax=Azoarc... 287 2e-76 UniRef50_P40594 Hydrogenase expression/formation protein hoxQ n=... 287 3e-76 UniRef50_A0P1N4 HupH hydrogenase expression/formation protein n=... 283 4e-75 UniRef50_Q03007 Hydrogenase expression/formation protein hupH n=... 283 4e-75 UniRef50_D2LGL6 HupH hydrogenase expression protein n=1 Tax=Rhod... 283 5e-75 UniRef50_Q0A722 HupH hydrogenase expression protein n=1 Tax=Alka... 283 6e-75 UniRef50_Q56363 HupH n=1 Tax=Thiocapsa roseopersicina RepID=Q563... 281 2e-74 UniRef50_Q60CE7 Putative hydrogenase expression/formation protei... 275 1e-72 UniRef50_B2JX95 HupH hydrogenase expression protein n=1 Tax=Burk... 271 1e-71 UniRef50_P28150 Hydrogenase expression/formation protein hupH n=... 264 3e-69 UniRef50_P48340 Hydrogenase expression/formation protein hupH n=... 258 2e-67 UniRef50_Q9ANQ2 HupH protein n=1 Tax=Bradyrhizobium japonicum Re... 214 2e-54 UniRef50_Q2RV78 Hydrogenase expression/formation protein hupH n=... 206 5e-52 UniRef50_A5FVC8 HupH hydrogenase expression protein n=1 Tax=Acid... 202 8e-51 UniRef50_B3DVL9 HupH hydrogenase expression protein n=1 Tax=Meth... 197 4e-49 UniRef50_B3DWK8 Hydrogenase expression/formation protein hoxQ n=... 183 7e-45 UniRef50_B2ICM0 Putative uncharacterized protein n=1 Tax=Beijeri... 159 9e-38 UniRef50_B4U667 HupH hydrogenase expression protein n=1 Tax=Hydr... 129 2e-28 UniRef50_A8UUE6 Putative uncharacterized protein n=3 Tax=Aquific... 124 4e-27 UniRef50_B4S320 HupH hydrogenase expression protein n=1 Tax=Alte... 123 9e-27 UniRef50_B8GQG1 Putative uncharacterized protein n=1 Tax=Thioalk... 119 1e-25 UniRef50_B5ERL8 HupH hydrogenase expression protein n=2 Tax=Acid... 114 3e-24 UniRef50_D1BNA7 Putative uncharacterized protein n=3 Tax=Veillon... 114 4e-24 UniRef50_A5EUI6 Putative uncharacterized protein n=1 Tax=Bradyrh... 113 1e-23 UniRef50_Q3SJ38 Putative uncharacterized protein n=1 Tax=Thiobac... 109 9e-23 UniRef50_C5S7N4 HupH hydrogenase expression protein n=1 Tax=Allo... 109 1e-22 UniRef50_A1HTR0 HupH hydrogenase expression protein n=1 Tax=Ther... 106 1e-21 UniRef50_C8S1B1 HupH hydrogenase expression protein n=1 Tax=Rhod... 100 5e-20 UniRef50_Q9ANQ3 ID32 n=1 Tax=Bradyrhizobium japonicum RepID=Q9AN... 49 2e-04 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P19932 Hydrogenase-1 operon protein hyaF n=196 Tax=Enterobacteriaceae RepID=HYAF_ECOLI Length = 285 Score = 324 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 285/285 (100%), Positives = 285/285 (100%) Query: 1 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL Sbjct: 1 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 Query: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV Sbjct: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 Query: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN 180 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN Sbjct: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN 180 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT Sbjct: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT Sbjct: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 >UniRef50_P31911 Hydrogenase expression/formation protein hoxQ n=6 Tax=Proteobacteria RepID=HOXQ_RALEH Length = 282 Score = 319 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 138/275 (50%), Gaps = 6/275 (2%) Query: 8 LLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 LLGPG+Q D++ +P V P + EQ A Q ++L + L +R P Sbjct: 10 LLGPGSQAEDETLDYIHMPQGMSVYTPPVLPEPEQIACLTQAQSVLRAILDAL-DRADPK 68 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK 127 ++L L+ ++R + +LGEGEVS RI+ + + IQEA+F G+WRV + Sbjct: 69 QPNPRIELWALDEENRQLLKQVLGEGEVSARIE--GEYQVYIQEAVFAGVWRVVSTCPDA 126 Query: 128 LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDAQP 185 D +E G AP L AA + DG+MN + E+ + +P Sbjct: 127 T-TDYIEVGAAPEVLRGAARYGANQWSLDVGRVPDGVMNAPSILAEIDDQLLSWHPGKPV 185 Query: 186 HSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPL 245 H +NLT LP+S D FL G ++ I + GYG I++T + + W + ++ + Sbjct: 186 HVVNLTLLPMSPQDITFLDETLGAASVTILSRGYGNCRISSTAVPYCWRVVYFNSQDTTI 245 Query: 246 LESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 L + EI +PEV AAPEDL DS +RL+EV +W+ Sbjct: 246 LNTVEITDLPEVACAAPEDLRDSHERLTEVLKWVG 280 >UniRef50_B5F604 Hydrogenase-1 operon protein HyaF2 n=38 Tax=Salmonella enterica RepID=B5F604_SALA4 Length = 353 Score = 313 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 137/283 (48%), Gaps = 3/283 (1%) Query: 4 TFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSER 63 ++ GPG+QP ++ F+ P+P + P + A +L L ++ Sbjct: 8 PVVNIAGPGSQPEEEDFNFLPIPAGINLPLTPVLPEQALPAELRVARHILTTLIRDMNNP 67 Query: 64 QPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRR 123 L L+ L + ++ LLGEGE+S R+ D E IQE +F G+WRVR Sbjct: 68 VATLPFPLSYKLNATEQQNSGLLDQLLGEGEISARVLLPDGKEQRIQETVFTGVWRVREY 127 Query: 124 RGEK-LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRNPD 182 ++ + D++ G P ++WQ Q P LPP GLMNG +AHE+ V P Sbjct: 128 NADQQRVADEIIIGPIPESIWQTHPQP--PITPELPPQPAGLMNGAFIAHEIAERVNQPV 185 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 +PH INLT LP+++ADR +L G G I + GYG+ I +T VW + + + Sbjct: 186 KEPHIINLTLLPVNDADREYLDHFLGEGCSAIFSRGYGKCRIVSTHFPGVWRVNYFNDMN 245 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT 285 L + EI IP++ +A +D+ D+ L +WL E T Sbjct: 246 TLLQDMIEIADIPDIAVAGIDDIEDAYAGLKNTLEWLKEYPAT 288 >UniRef50_B2IJ35 HupH hydrogenase expression protein n=9 Tax=Alphaproteobacteria RepID=B2IJ35_BEII9 Length = 295 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 9 LGPGTQP--NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 GPG+QP ++D +P P + + + Q IA L EL+ ++ Sbjct: 12 FGPGSQPQTDEDGLQYLAMPSGVTTYS-PHLPEIVDPLAARQAIAFLGELREAATQW--T 68 Query: 67 LGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR--RR 124 G L L+A R +N LGEGEVSV ++ E+QE +F GLW +R Sbjct: 69 QGHSNIHKLETLDAACRLMVNDALGEGEVSVLLEDPTGRI-EVQETVFAGLWCLRALPAS 127 Query: 125 GEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAH--VRNPD 182 + L +++E P ++ A D P G++N + ELL H P Sbjct: 128 DTESLREQVEIAAFPRSVLSRAFPAARTMDLAALTPPSGIVNAPAILTELLEHSAAWRPG 187 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 A HSINLT LP + D F+ + G G + I + GYG I AT HVW +R +++ Sbjct: 188 AVSHSINLTLLPHTPEDLAFIDHVLGQGRVTILSRGYGNCRIEATATPHVWRVRYYNSMD 247 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAP 284 +L+ E+ +PEV AAPED+ DSAQRL+E+C+ L + A Sbjct: 248 TLILDMIEVVDVPEVACAAPEDIQDSAQRLAEICEALEQEAA 289 >UniRef50_Q478M1 HupH hydrogenase expression protein, C-terminal conserved region n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M1_DECAR Length = 287 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 85/279 (30%), Positives = 126/279 (45%), Gaps = 13/279 (4%) Query: 8 LLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 +GPG+Q D++ P+P + +P + + +LL ++ Sbjct: 15 AMGPGSQG-DETPDYLPMPKGMETFSQPRLPDNVAPEVVNRAASLL----GTFADEAERF 69 Query: 68 GEVL--AVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG 125 G ++LL+L+A R IN +G GEVS +QE F GLWRV + Sbjct: 70 GFEGAARLELLDLDATMRDVINQSMGFGEVSAFTTAPA--HWRVQETAFSGLWRVLKVAD 127 Query: 126 EK-LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELL--AHVRNPD 182 + ++ D LE G P A+ A + D P G MN L E+ A Sbjct: 128 DGAMMVDHLETGSVP-AVLTEAMVSTSTADLPPPDYPAGCMNAQALVEEIRMQAAAWKAG 186 Query: 183 AQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLK 242 H INLT LP+S+AD L G + I + GYG I +T L++VW ++ +++ Sbjct: 187 DSAHVINLTLLPVSDADLDTLYGWLGHREVSILSRGYGNCRITSTRLKNVWWVQYFNSMD 246 Query: 243 GPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAE 281 +L S EI +PEV LAA ED DS +RL E + E Sbjct: 247 TLILNSIEIVGMPEVALAADEDFSDSVERLREYLDMMVE 285 >UniRef50_Q43957 Hydrogenase expression/formation protein hupQ n=2 Tax=Gammaproteobacteria RepID=HUPQ_AZOCH Length = 284 Score = 293 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 130/280 (46%), Gaps = 11/280 (3%) Query: 7 HLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 GPG+ +D P+P + PS+ EQ P +ALL LQ L+ Sbjct: 10 PGFGPGSHGEEDRLDYLPMPREMHTFERPSLPEPEQLDSHPIALALLERLQEALT--AYR 67 Query: 67 LGEVLAVDLLNLNA-DDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG 125 +GE V L+ D + +LGEGEV+ IQ IQE + G+W V+ + G Sbjct: 68 IGEQSRVIGLDRQPKADLKLLQQILGEGEVA--IQVGGQRPVRIQETVLAGVWWVQLQVG 125 Query: 126 -EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLA----HVRN 180 +++ LE P + + A L D L+N P+ ELL H + Sbjct: 126 LGEVVGQWLEVADIPALVRRRAFAEAR-WPRLGATLPDDLLNAGPVLVELLEAAKQHAEH 184 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 A PH INL+ LP S D+ FL+ G G + + + GYG I +T +W ++ ++ Sbjct: 185 ASATPHVINLSLLPFSAEDQRFLAEQLGEGPVTVLSRGYGNCRIASTATPGIWRVQYFNS 244 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 +L++ E+ IP+ AA ED+ DSA+RL E+ + L Sbjct: 245 TDRLILDTLEVTAIPQAACAAQEDIDDSAERLREIREALE 284 Score = 74.7 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 18/156 (11%) Query: 144 QAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDAQPHSINLTQLPISEADRL 201 P +D L L L + Q I L + P +AD Sbjct: 29 PREMHTFERPSLPEPEQLDSHPIALALLERLQEALTAYRIGEQSRVIGLDRQP--KADLK 86 Query: 202 FLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVL-- 259 L ++ G G + I+ G I T L VW ++ L + + E+ IP +V Sbjct: 87 LLQQILGEGEVAIQVGGQRPVRIQETVLAGVWWVQLQVGLGEVVGQWLEVADIPALVRRR 146 Query: 260 ------------AAPEDLVDSAQRLSEVCQWLAEAA 283 P+DL+++ L E+ + + A Sbjct: 147 AFAEARWPRLGATLPDDLLNAGPVLVELLEAAKQHA 182 >UniRef50_C7I142 HupH hydrogenase expression protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I142_THIIN Length = 285 Score = 289 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 6/273 (2%) Query: 8 LLGPGTQP-NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 +GPG+QP D++ +P +D S+ E+ +V L ++L Sbjct: 11 AVGPGSQPIEDEALEYMAMPKEMFTHDLVSLPESEELRDRTRVRDLFDDLLATTRAYSVG 70 Query: 67 LGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR-RRG 125 +A DL L+A D +N +LG GEVSV + D+ QE++ G+WRVR+ Sbjct: 71 DKG-IAHDLSQLDAADLDCLNQILGVGEVSVTLDLPGDTLL-AQESVLTGIWRVRQIDAA 128 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDA 183 + +L+D LE G P A+ ++ T L PI G+ N L E+ + P Sbjct: 129 QTVLDDHLEVGDVPHAVRSSSFGAAPGTALLPGAPIPGVQNAPALLVEIAEKMSTWTPGD 188 Query: 184 QPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243 Q H INLT LP++ D + L G G I + GYG I AT + +VW ++ ++ Sbjct: 189 QAHVINLTLLPLTREDLIHLGSELGVGPATILSRGYGNCRIGATRMPNVWWVKYFNSQDA 248 Query: 244 PLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 +L + EI +P V LAA EDL D+A RL E+ Sbjct: 249 LILNTIEIVDVPAVALAAQEDLADTADRLHEIL 281 >UniRef50_A1KC55 Hydrogenase-1 operon protein hupH n=1 Tax=Azoarcus sp. BH72 RepID=A1KC55_AZOSB Length = 290 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 126/276 (45%), Gaps = 7/276 (2%) Query: 8 LLGPGTQPN-DDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 GPG+QP D++ PLP P + A +A L L + Sbjct: 15 AAGPGSQPEEDEALDYLPLPSGMDTFAPPRLPDHIDPASRATAVATLQGLLAAMRAWTFG 74 Query: 67 LGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR-RRG 125 VDL L+ IN LG+GEVS R+ ++E IQE +F G+WRV RG Sbjct: 75 TPGHPVVDLAPLDGASLALINDALGQGEVSARVL--GETELRIQETVFAGIWRVVETDRG 132 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDA 183 + L D++EA P + + + P P G+MN + +ELL V R P A Sbjct: 133 GRRLSDRIEACAMPAEVITRSLEAAQ-AAIAAPTPPQGVMNAPAVLNELLHAVATRRPGA 191 Query: 184 QPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243 H +NLT LP++ AD +L + G G I + GYG I AT L W ++ ++ Sbjct: 192 AAHIVNLTLLPMNPADLAWLVEVLGVGPTVILSRGYGNCRITATALARTWWVQYFNSADT 251 Query: 244 PLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWL 279 +L + E+ +P+V AA +D DS RL E L Sbjct: 252 LILNTLEVTELPDVAPAAADDFGDSIARLEEWIATL 287 >UniRef50_P40594 Hydrogenase expression/formation protein hoxQ n=3 Tax=Azotobacter vinelandii RepID=HOXQ_AZOVI Length = 283 Score = 287 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 133/280 (47%), Gaps = 12/280 (4%) Query: 7 HLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPP 66 GPG+ ++ +P + + P++ Q + P +ALL LQ L Sbjct: 10 PGFGPGSHGEEERPDCPSMPRAMRRFERPALPEPGQLSGHPIALALLERLQEALG--AYR 67 Query: 67 LGEVLAVDLLNLNA-DDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG 125 +GE V L+ D + +LGEGEV+ IQ + IQE + G+W V+ + G Sbjct: 68 IGEQSRVIGLDRQPKADLKLLQQILGEGEVA--IQVGGQRPARIQETVLAGVWWVQLQIG 125 Query: 126 -EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLA----HVRN 180 +++ LE P + + A L DGL+N P+ ELL H Sbjct: 126 RGEVVGQWLEVADVPALVRRRAFAETRWPQ--LGELPDGLLNAGPVLVELLDAAKRHAER 183 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 A PH++NL+ LP S DR FL+ G G++ + + GYG I +T +W ++ ++ Sbjct: 184 ALATPHAVNLSLLPFSPEDRRFLAERLGEGSVTLLSRGYGNCRIASTATPGIWCVQYFNS 243 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 +L++ E+ IP+V AA ED+ DSA+RL E+ + L Sbjct: 244 SDRLILDTLEVTGIPQVACAAQEDIDDSAERLREIREALE 283 >UniRef50_A0P1N4 HupH hydrogenase expression/formation protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N4_9RHOB Length = 277 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 128/281 (45%), Gaps = 11/281 (3%) Query: 1 MSETFFHLLGPGTQPNDDS---FSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQ 57 MS ++GPG+QP D+ +P + P++ E+ E Sbjct: 1 MSNPIGPVVGPGSQPLDEDGGVLDYMSMPSGMMIFAAPNLPEAEEAEDL-DAGKAALEAL 59 Query: 58 HQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGL 117 +L E G VDL L+ + +N +LGEGEVSV + + QEA+ G+ Sbjct: 60 LRLLEDSERTGTNGRVDLNGLDEANLALVNQVLGEGEVSV----IGGAALQAQEAVLAGV 115 Query: 118 WRVRRRRGEKLL-EDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLA 176 WRVR + D +E P + A + + N PL E+ Sbjct: 116 WRVRETAADGRTTADYVEVAAFPRTVLARAFAGAQAQVPIPERFGPNVFNAPPLLPEINE 175 Query: 177 HVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLR 236 H+ ++PH INL+ LP +E D L+ L G G I + GYG I AT R W ++ Sbjct: 176 HI--AKSRPHVINLSLLPHTEEDLGLLNDLLGRGETTILSRGYGNCRIMATATRDTWWVQ 233 Query: 237 CTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 ++ +L + EICPIP V AAPED+ DSA+RL+E+ + Sbjct: 234 FYNSQDTMILNTIEICPIPAVACAAPEDIADSAERLNEILE 274 >UniRef50_Q03007 Hydrogenase expression/formation protein hupH n=8 Tax=Rhodobacteraceae RepID=HUPH_RHOCA Length = 275 Score = 283 bits (724), Expect = 4e-75, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 128/273 (46%), Gaps = 12/273 (4%) Query: 9 LGPGTQPN-DDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 GPG+QP D+ LP + + +E + + LL+E+ Sbjct: 12 FGPGSQPEGDEELGYMQLPSGMRTYSA-HLPEVEDSSAVTPALKLLDEI--AAGAEACAR 68 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK 127 G + + DL L+A +R I +G+GEV+++I+ +QE++F G+W V Sbjct: 69 GGMASFDLAGLDAQNRALIAETMGQGEVAMKIRGI--PALMVQESVFAGVWSVAGAG--- 123 Query: 128 LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAH-VRNPDAQPH 186 D++E G P A A + + LPP DG++N L EL Sbjct: 124 --VDRIEVGAVPAAALSRAFEPFRKGQTALPPLSDGVVNAPALIAELFDKSAAYVGGAAD 181 Query: 187 SINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLL 246 INLT LP +E D L + G G + I + GYG I AT HVW ++ ++ +L Sbjct: 182 VINLTLLPHTEEDLTLLDYMLGEGAVTILSRGYGNCRITATATPHVWRVQFYNSTDALIL 241 Query: 247 ESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWL 279 ++ E+ +PEV LAA EDL DSA R+ EV + + Sbjct: 242 DTIEVTTMPEVALAAREDLEDSAGRIREVLEAI 274 >UniRef50_D2LGL6 HupH hydrogenase expression protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL6_RHOVA Length = 280 Score = 283 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 145/276 (52%), Gaps = 11/276 (3%) Query: 7 HLLGPGTQPNDDS--FSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQ 64 L GPG+QP+D+ + LP P + E A + L+ L Sbjct: 6 PLAGPGSQPDDEDGDLAFMELPKGMATFSMPQIPEPEVAAAHAAALEKLDAALEALRA-A 64 Query: 65 PPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRR 124 P G + +DLL+L+AD+R F++ +LGEGEVS+ S + QE++ G+WR+ Sbjct: 65 PAPGTSITIDLLDLDADNRAFVDQMLGEGEVSI----VAGSHVQAQESVLAGVWRIHVVG 120 Query: 125 GEK-LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPI-DGLMNGLPLAHELLAHVRN-- 180 + L+ D +E G PL++ AA PT L D LMN +A EL + Sbjct: 121 SDGALIADAIEVGEFPLSVLAAAQDAGAPTLRALDAVAEDDLMNAPSIAAELADKLAAFA 180 Query: 181 PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT 240 P PH+INLT LP+S+ D +L G G + I + GYG I++TG+R+ W +R ++ Sbjct: 181 PGTPPHAINLTLLPVSDGDLAYLDARLGQGAVTILSRGYGNCRISSTGVRNAWWVRYFNS 240 Query: 241 LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 + +L + E+C +P+V AA EDL DSA+RL+E+ Sbjct: 241 REILILNTIEVCRVPDVACAAREDLEDSAERLAEIL 276 >UniRef50_Q0A722 HupH hydrogenase expression protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A722_ALHEH Length = 278 Score = 283 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 10/273 (3%) Query: 7 HLLGP-GTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQP 65 L GP G+ + P+P + E + + L + QP Sbjct: 11 PLSGPAGSGFEEPGLDYLPMPKGMGTFSPAVLPDPEVLSDREGTLRCLESVIAGARRWQP 70 Query: 66 PLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRG 125 + +D+ L+ +R ++ +LG+GEVS R+ QE++F G+WRV Sbjct: 71 DE-RNIHLDVSTLSDAERRLLDEVLGDGEVSARLPGHG---VVAQESVFAGVWRVADAAA 126 Query: 126 EKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN-PDAQ 184 + D+LE G P L A P L +G+MN + EL H+ + Sbjct: 127 GR---DRLEIGPVPDCLLN-AFAEASPAPRLPEQWPEGVMNAPGVLSELTEHLDVLSNNG 182 Query: 185 PHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGP 244 H INL+ LP++ D L G + + GYG + AT VW ++ +++ Sbjct: 183 RHVINLSLLPLTPEDHECLDEALGRSETAVLSRGYGNCRVTATMTAGVWWVQYFNSVDVL 242 Query: 245 LLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 +L + E+ +P+VV AAPED+ DSA R++EV + Sbjct: 243 ILNTLEVVAVPDVVCAAPEDIADSADRVAEVLE 275 >UniRef50_Q56363 HupH n=1 Tax=Thiocapsa roseopersicina RepID=Q56363_THIRO Length = 284 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 9/275 (3%) Query: 11 PGTQPN---DDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPL 67 PGT + DD +P P + E + LL + + Sbjct: 14 PGTTFSVVVDDGPDYLSMPKGMATYQAPLLPEPELLEGCTAGLELLRNCKGPCRDIAS-- 71 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK 127 +DL L+ +R ++ LGEGEVSV Q + QE G+WR+ Sbjct: 72 AGRTVLDLGPLDLVNRRLVDQTLGEGEVSVIEQGLQGT--RAQETRLAGVWRLEVPASAT 129 Query: 128 LLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHV--RNPDAQP 185 ++ +E P + ++A + T + + DG+MN L E+ A V P Sbjct: 130 ARDELIEVAEIPRFVRESAFIGTIETIAPVAHLADGVMNAPALIAEIEAKVAEWRPGDSA 189 Query: 186 HSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPL 245 H INLT LP++E D +L G G++ I + GYG I A+G+R VW ++ ++ + Sbjct: 190 HIINLTLLPMTEQDHAYLDERLGRGHVTILSRGYGSCRIVASGIRQVWWVQHFNSDDRLI 249 Query: 246 LESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 L + E+ +P LAA ED+ DS RL+E+ + L Sbjct: 250 LSTLEVTDVPIAALAAQEDIDDSRDRLAEILEALG 284 >UniRef50_Q60CE7 Putative hydrogenase expression/formation protein n=1 Tax=Methylococcus capsulatus RepID=Q60CE7_METCA Length = 278 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 15/282 (5%) Query: 6 FHLLGPGTQP-----NDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL 60 F + G P +D + P+P P + AL + + + A+L ++ +L Sbjct: 5 FAFIATGNTPLFRLHDDPECTCPPMPEAMATFTPPPLHALSR-DETGEGCAVLQKVIERL 63 Query: 61 SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV 120 G VDL + R F++ +LGEGEV +RI D + I+E++F G+WRV Sbjct: 64 G------GAPGIVDLAPCDPAARRFVDEVLGEGEVLIRIVTPRDRVT-IRESVFAGVWRV 116 Query: 121 RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP-IDGLMNGLPLAHELLAHVR 179 + R +L D LE G P A++ A + + P +GLMN L E+ H Sbjct: 117 QHRIDGELRRDDLETGPVPEAVYGWAERLTVDGPPHRPQSFPEGLMNAPALLTEIFDHSA 176 Query: 180 N-PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCT 238 + P+ +PH INL+ LP++ D FL G + + + GYG+ + T L +VW ++ Sbjct: 177 DCPNDRPHVINLSLLPLTPEDSKFLIDTLGTAGLSVLSRGYGDCRVTLTRLPNVWWVQYF 236 Query: 239 DTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 ++ +L + EI +P VV AAPEDL DS +R++E L Sbjct: 237 NSPGQLILNTLEITRLPAVVAAAPEDLEDSRERIAEALAQLK 278 >UniRef50_B2JX95 HupH hydrogenase expression protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX95_BURP8 Length = 292 Score = 271 bits (694), Expect = 1e-71, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 137/290 (47%), Gaps = 16/290 (5%) Query: 4 TFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSER 63 + GPG+ P D++S PLP T ++ + + V+ALL + L + Sbjct: 8 SIIRAAGPGSLPEPDNWSCLPLPSTSEIWRTTATPEH----GAGDVLALLRAMVTAL-DG 62 Query: 64 QPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSES------EIQEAIFCGL 117 P L + L AD + ++GEGEVS R+ + + + IQE + G+ Sbjct: 63 NPSPAHPLVFRVGTLGADAHRLLAQIMGEGEVSARVVSSRGTRAHAGALVRIQECRYPGI 122 Query: 118 WRVRRRRGEKL-LEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLA 176 WR+ + ++D++E G P A+ A + ++ L + +A E+ A Sbjct: 123 WRIIVDSANGVRIDDRIEIGAIPAAILYEARHSGTTQGTIPDTSSHKLTSAPSIASEIAA 182 Query: 177 H----VRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHV 232 V A H IN + LP++ AD +L + G G + I + GY + + AT RHV Sbjct: 183 AQARAVSRRGAGSHVINFSLLPVTPADVAWLDNMLGAGTVSIFSTGYCKCTVIATTWRHV 242 Query: 233 WHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEA 282 W +R D LL++ I IPE+V+AA EDL+DS + L E+ +WL E Sbjct: 243 WRVRYFDGSNKVLLDTLNIALIPEMVIAAAEDLMDSLRHLREIVKWLEED 292 >UniRef50_P28150 Hydrogenase expression/formation protein hupH n=3 Tax=Rhizobium RepID=HUPH_RHILV Length = 282 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 126/274 (45%), Gaps = 13/274 (4%) Query: 15 PNDDSFSMNPLPITCQVNDEPS-------MAALEQCAHSPQVIALLNELQHQLSERQPPL 67 P + +M +PI + +A E + LL EL L+ ++ Sbjct: 9 PEGEGAAMTVMPIGAEPPLRARKLNFLATSSAEEMIRRCRRTAMLLPELADALAVQKAEQ 68 Query: 68 GEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRR-RRGE 126 L D+ + DDR I LGEGEV+ A+ +++QEA+ G+WR+R Sbjct: 69 PGRL-FDITDFPDDDRELITQTLGEGEVAGVAALANGVTAQMQEAVMAGVWRIRFTDVDG 127 Query: 127 KLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN--PDAQ 184 +L+ D +E P A+ QA + LP P G MN +P+ E+ + Sbjct: 128 RLIADYIEVASIPAAVRQAC--SGLPASISHGPAPAGAMNVMPVLTEIGDRIARYRDGDP 185 Query: 185 PHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGP 244 H I + P+S D FL G G +Q+ + GYG + ATG R+VW ++ + + Sbjct: 186 AHVITFSLFPMSPEDMAFLQDALGAGPVQLTSRGYGTCRVVATGARNVWSVQFYNAMDTI 245 Query: 245 LLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQW 278 +L++ E+C IP V +AA ED DS RL ++ + Sbjct: 246 ILDTLEVCNIPSVAIAAEEDFRDSEARLRDIWEA 279 >UniRef50_P48340 Hydrogenase expression/formation protein hupH n=11 Tax=Bradyrhizobiaceae RepID=HUPH_BRAJA Length = 287 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 35 PSMAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGE 94 ++ + E P +ALL+ + ++ ++ L L NLN + I +LGEGE Sbjct: 43 ATLDSAELARSCPNAVALLSRIADAIAGQKADAPSQL-FRLANLNDLESKLIADVLGEGE 101 Query: 95 VSVRIQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTD 154 V+ + D S ++IQE++ G+WRVR + LE G P + +AA L D Sbjct: 102 VAGVVALPDGSLAQIQESVLAGIWRVRLETDAN--HEYLEIGAVPEIVKRAAAD-LTSAD 158 Query: 155 SLLPPPIDGLMNGLPLAHELLAHV--RNPDAQPHSINLTQLPISEADRLFLSRLCGPGNI 212 + +G MN LP+ E+ P + IN T LP+S D FL G I Sbjct: 159 FEIGQVPEGAMNVLPVLAEIRERALAWRPGIRSQIINFTLLPMSPVDMSFLQDTIRNGPI 218 Query: 213 QIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRL 272 Q+ + GYG + +TG+R+VW ++ + + +L++ E+ +P V LAA ED DSA+RL Sbjct: 219 QLVSRGYGTCRVLSTGIRNVWSVQFFNAMDTIILDTLEVGGVPTVALAADEDFEDSAERL 278 Query: 273 SEVCQW 278 E+ + Sbjct: 279 KEIIEA 284 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 5/125 (4%) Query: 143 WQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLF 202 AA N + L + + A S +++ + Sbjct: 33 LTAAGALAKLATLDSAELARSCPNAVALLSRIADAIAGQKADAPSQLFRLANLNDLESKL 92 Query: 203 LSRLCGPGNIQ-IRTIGYGE-SYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLA 260 ++ + G G + + + G + I + L +W +R E EI +PE+V Sbjct: 93 IADVLGEGEVAGVVALPDGSLAQIQESVLAGIWRVRLETDANH---EYLEIGAVPEIVKR 149 Query: 261 APEDL 265 A DL Sbjct: 150 AAADL 154 >UniRef50_Q9ANQ2 HupH protein n=1 Tax=Bradyrhizobium japonicum RepID=Q9ANQ2_BRAJA Length = 183 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 97/182 (53%), Gaps = 5/182 (2%) Query: 99 IQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLP 158 + D S ++I+E++ G+WRVR G + + +E G P + +AAT L T+ L+ Sbjct: 2 VALPDGSLAQIRESVHAGIWRVRI--GTEPAHEYVEVGAIPQIVRRAATD-LTSTELLID 58 Query: 159 PPIDGLMNGLPLAHELLAHV--RNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRT 216 P DG MN P+ E+ H INLT LP+S D FL + G G +Q+ Sbjct: 59 TPPDGAMNVQPVLAEIRERASVWQFCMNAHVINLTLLPMSVVDLTFLQQSLGNGPVQLML 118 Query: 217 IGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 GYG + ATG R+VW ++ ++ +L++ E+ +P V LAA ED DSA R+ E+ Sbjct: 119 RGYGACRVQATGTRNVWSVQFFNSTDNIILDTVEVGGVPIVALAADEDFQDSAGRVQEIL 178 Query: 277 QW 278 + Sbjct: 179 EA 180 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 4/108 (3%) Query: 43 CAHSPQVIALLNELQHQLSERQ-PPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQ 101 + V +L E++ + S Q V+ + LL ++ D F+ LG G V + ++ Sbjct: 61 PDGAMNVQPVLAEIRERASVWQFCMNAHVINLTLLPMSVVDLTFLQQSLGNGPVQLMLRG 120 Query: 102 ADDSESEIQEAIFCGLWRVRRRRG-EKLLEDKLEAGCAPLALWQAATQ 148 +Q +W V+ + ++ D +E G P+ A Sbjct: 121 YGAC--RVQATGTRNVWSVQFFNSTDNIILDTVEVGGVPIVALAADED 166 >UniRef50_Q2RV78 Hydrogenase expression/formation protein hupH n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RV78_RHORT Length = 258 Score = 206 bits (525), Expect = 5e-52, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 104/247 (42%), Gaps = 15/247 (6%) Query: 42 QCAHSPQVIALLNELQHQLSERQP---PLGEVLAVDLLNLNADDRHFINTLLGEGEVSVR 98 A + AL L ER P+ DL +A R I+ LLGEGEV+ Sbjct: 14 DSAAERALRALFAGCITALEERASGAVPVERPALFDLAAFDAVGRARIDGLLGEGEVAGL 73 Query: 99 IQQA-DDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLL 157 + + + ++EA+ GLWR+ G ++ LE G P A+ AA P D+ Sbjct: 74 VDRPVEGGALALREAVVPGLWRIA--GGGRV---HLEVGDIPGAVRAAAAWGNEPPDAER 128 Query: 158 PPP-IDGLMNGLPLAHELLAHVRNPDAQ-----PHSINLTQLPISEADRLFLSRLCGPGN 211 G+MN L E+ HVR PH I LT P+S D L+R+ G G Sbjct: 129 VVRGQPGVMNARALLDEIARHVRRVGDDLSHEPPHEIILTHTPLSAGDNALLARVLGNGG 188 Query: 212 IQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQR 271 + + G + T HVW + ++ +L EI +P V A ED DSA+R Sbjct: 189 VTLVAGGRTTCKVTLTACAHVWRVEHFNSEDRLILHGLEIGDVPAAVRATAEDCGDSARR 248 Query: 272 LSEVCQW 278 L + Sbjct: 249 LRALIDA 255 >UniRef50_A5FVC8 HupH hydrogenase expression protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FVC8_ACICJ Length = 276 Score = 202 bits (515), Expect = 8e-51, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 110/267 (41%), Gaps = 9/267 (3%) Query: 13 TQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLA 72 + + LP V PS+ A + A L + E V Sbjct: 10 SGTAEAGPDYLALPTEMHVFRAPSLPD--DPAARARCRAWLQRI-GAALEAAASGAAVGQ 66 Query: 73 VDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRR-RGEKLLED 131 + L +A D ++ +L +GEVS + A E +I E + GLWR+R R D Sbjct: 67 IVLDEASAADCASLDEILLDGEVSALVLGA--PEWQIGETAYTGLWRLRARDAATGRRLD 124 Query: 132 KLEAGCAPLALWQAATQNLLPTDSLLPPP-IDGLMNGLPLAHELLA--HVRNPDAQPHSI 188 +LE G P + A + + P ++N + EL A P H I Sbjct: 125 RLEIGPIPAVVAARAAASWGLMELPAPEAIPPEMVNAPHVLAELRARSAAFRPGGAAHVI 184 Query: 189 NLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLES 248 NL LP++EA+ +L R G G I + GYG I +T L W ++ + +L + Sbjct: 185 NLGLLPLAEAELTWLVRTLGEGPAIILSGGYGTCRIRSTRLAGTWWVQYYNAADALILNT 244 Query: 249 YEICPIPEVVLAAPEDLVDSAQRLSEV 275 EI +P V AA +D+ +SA R+ + Sbjct: 245 LEIAAVPAVACAAQDDVAESASRVRAL 271 >UniRef50_B3DVL9 HupH hydrogenase expression protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DVL9_METI4 Length = 233 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 91/240 (37%), Gaps = 14/240 (5%) Query: 50 IALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEI 109 LL ++ E + V + ++ LL GEV + + Sbjct: 2 RDLLEKIYLSFLEERD---GKRVVQVPFCGNRGSELLSYLLEGGEVEMHFGRNSGRVVF- 57 Query: 110 QEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPI---DGLMN 166 E+ GLW + +L LE G P L + L L GLMN Sbjct: 58 -ESKIPGLW--ATWQSGELKC--LEVGELPTLLLEVQGDLPLIPSFNLGELSTIRPGLMN 112 Query: 167 GLPLAHELLAHVRNPDAQPH--SINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 G + E+ R D H I L LP+S AD+ L G G + I GYG+ +I Sbjct: 113 GPYILVEISRIAREHDFTTHPRVIPLNFLPLSLADQKLLDEKLGHGELTICIKGYGQCWI 172 Query: 225 NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAP 284 T R++W + + + +S EI IP ++ A ED+ ++ ++ + + P Sbjct: 173 KNTPYRNIWWVEHLNVEGKSIFKSIEITSIPSLIRTAREDMERGLSKIEKLMEKMDHEIP 232 >UniRef50_B3DWK8 Hydrogenase expression/formation protein hoxQ n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWK8_METI4 Length = 269 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 13/235 (5%) Query: 50 IALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEI 109 + LL E+ L + L DL + +LG GE+ + + + Sbjct: 39 LDLLKEIAGALR-LVIRGEKNLLFDLSKVAQIQVEHYFRVLGLGELCIFHPKVL-TVYAA 96 Query: 110 QEAIFCGLWRVRR-RRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGL--MN 166 Q+ F G+W V + R ++ +E G P + + + D G ++ Sbjct: 97 QQTSFPGVWWVEKKERKKEGSSLHIEVGRIPHFVLSEREERVEKPDLKALLCSLGSSGIS 156 Query: 167 GLPLAHELLAHV--RNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 L+++ D + I L+ LP+S D L L + + + ++++ Sbjct: 157 LQAFVSSLVSYACGEGADREEKKIYLSLLPLSIQDIKTLFWLLPKTDFTLYSQKQ-KAWV 215 Query: 225 NATGLRHVWHLRCTDTLKGPLLE---SYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 T +++W + + + + +CP P + DL SA+RL ++ Sbjct: 216 FGTPWKNIWWIE--EATDPEINQKSLGLLVCPFPYSLFPGTLDLSISARRLEKMV 268 >UniRef50_B2ICM0 Putative uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2ICM0_BEII9 Length = 312 Score = 159 bits (402), Expect = 9e-38, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 88/237 (37%), Gaps = 23/237 (9%) Query: 45 HSPQVIALLNELQHQLSERQPPLG--EVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA 102 S LL+ L L E E + DL L D FI LLGEG ++ +I Sbjct: 70 CSTAGKRLLDRLAIALLEGVDDGNDEEEILFDLTELGTKDIQFIQHLLGEGRITGKIALT 129 Query: 103 DDSESEIQEAIFCGLWRVRRRRGEKLLEDK-LEAGCAPLALWQAATQNLLPTDSLLPPPI 161 D +E++ W + R + ++ + L+ P L QAA L P Sbjct: 130 DGVVAEVRSTALTRAWEIVFRGPDGVILEHFLQVDDLPRILRQAALATPLEFQEPARPDA 189 Query: 162 DGLMNGLPLAHELLAHVRN------PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIR 215 D PL + H + P +++L +L A L + G G+I + Sbjct: 190 D---PAFPLLKMIQFHAWHFEDKRNAVRDPLTLDLLKLE-DLATAQTLCEILGRGSIDLS 245 Query: 216 TI---------GYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIP-EVVLAAP 262 I +TG RHVW L D L ++ I +P ++LA+P Sbjct: 246 IKIADVDNPVSPIVSQRITSTGTRHVWLLESFDAKGTLLQQAVSIDDVPLAMMLASP 302 >UniRef50_B4U667 HupH hydrogenase expression protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U667_HYDS0 Length = 129 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 164 LMNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGE 221 LMN +P+ +E+ + + Q H I ++P+SE D+ FL + G G+I+I E Sbjct: 2 LMNAVPILYEIQKALEDFVKTGQNHIIYTNKIPLSEEDKEFLLDVLGEGSIKIEYKSKRE 61 Query: 222 -SYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 T L VW D + P+LE EI P ++ A ED+ DS +RL ++ + Sbjct: 62 YITFKETSLIGVWLGVVYDVERKPILEILEINSFPFMLQAPKEDIEDSIKRLKDILK 118 >UniRef50_A8UUE6 Putative uncharacterized protein n=3 Tax=Aquificaceae RepID=A8UUE6_9AQUI Length = 133 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 7/127 (5%) Query: 165 MNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGY-GE 221 MN +P+ E+L ++ + H I + ++PI+ DR + G G+++I Sbjct: 1 MNAVPILTEVLEALKEFLAKGEEHIIYINKVPITPEDREAILDTLGEGHVRIYYDSKTQP 60 Query: 222 SYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQ----RLSEVCQ 277 + TG+ VW D K P+LE+ EI P + A ED+ +S + RL EV + Sbjct: 61 AEWRETGIYGVWIGIIYDREKKPVLETIEITDFPRLAAAQREDMEESVRVLEDRLKEVAR 120 Query: 278 WLAEAAP 284 +P Sbjct: 121 LAQGDSP 127 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 3/117 (2%) Query: 48 QVIALLNELQHQLSERQPPLGEVLA-VDLLNLNADDRHFINTLLGEGEVSVRIQQADDSE 106 + +L E+ L E E + ++ + + +DR I LGEG V + Sbjct: 2 NAVPILTEVLEALKEFLAKGEEHIIYINKVPITPEDREAILDTLGEGHVRIYYDSKTQP- 60 Query: 107 SEIQEAIFCGLW-RVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPID 162 +E +E G+W + R +K + + +E P L + Sbjct: 61 AEWRETGIYGVWIGIIYDREKKPVLETIEITDFPRLAAAQREDMEESVRVLEDRLKE 117 >UniRef50_B4S320 HupH hydrogenase expression protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S320_ALTMD Length = 144 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 161 IDGLMNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG 218 D N +PL H++ + + +I+L +LP+S ++ L G G ++ Sbjct: 12 ADKTGNVMPLLHQIRHALSQLIERQEQTTIDLRRLPLSASEEAQLEAFLGHGEVKADIQA 71 Query: 219 YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQW 278 G++ + + VW + + + IC P ++ + PED+V S + Sbjct: 72 LGDTVLIESRYAGVWLEIHYNEDVEIMGKYVHICTCPPIIKSQPEDMVLSLSNIVSDIHS 131 Query: 279 LAEAA 283 L+ + Sbjct: 132 LSHQS 136 Score = 60.1 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 43 CAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEGEVSVRIQ 100 + V+ LL++++H L + E +DL L L+A + + LG GEV IQ Sbjct: 12 ADKTGNVMPLLHQIRHAL-SQLIERQEQTTIDLRRLPLSASEEAQLEAFLGHGEVKADIQ 70 Query: 101 QADDSESEIQEAIFCGLWRVRRRRGE-KLLEDKLEAGCAPLALWQAATQNLLPTD 154 D+ E+ + G+W + +++ + P + +L Sbjct: 71 ALGDTVLI--ESRYAGVWLEIHYNEDVEIMGKYVHICTCPPIIKSQPEDMVLSLS 123 >UniRef50_B8GQG1 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQG1_THISH Length = 150 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 167 GLPLAHELLAHVR--NPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 L E+ AH+ + ++ H+I+L LP++EADR L G G + + G + Sbjct: 26 ADALLREIHAHLVNLHERSESHTIDLKGLPLTEADRRQLREALGRGEVSMTVEAAGPTEA 85 Query: 225 NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQ 277 T VW + + L L EI +P + PED+ D+ +RL E Sbjct: 86 YETAYGGVWWIDYQNLLGSTALTHIEIARVPAIAPTHPEDIADALERLGEALN 138 Score = 74.3 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 46 SPQVIALLNELQHQLSE-RQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADD 104 + ALL E+ L + + + L L DR + LG GEVS+ ++ A Sbjct: 23 TGMADALLREIHAHLVNLHERSESHTIDLKGLPLTEADRRQLREALGRGEVSMTVEAAGP 82 Query: 105 SESEIQEAIFCGLWRVRRRR-GEKLLEDKLEAGCAPLA 141 +E+ E + G+W + + +E P Sbjct: 83 TEAY--ETAYGGVWWIDYQNLLGSTALTHIEIARVPAI 118 >UniRef50_B5ERL8 HupH hydrogenase expression protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERL8_ACIF5 Length = 138 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 170 LAHELLAHVRNP--DAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINAT 227 L E+ A + + H I+L LP+S ADR L G G I++ G S I T Sbjct: 22 LLQEIAAALDVLLLSGRRHCIDLGSLPLSPADRDLLRETLGTGEIRMELEALGNSRIEET 81 Query: 228 GLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC 276 G+ VW +R + L ES E+C +PE+V A D+ +RL + Sbjct: 82 GVPGVWWVRHSSEDGILLTESLEVCHVPEIVPADTTDIAIGLRRLRQRI 130 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 6/110 (5%) Query: 36 SMAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEG 93 + + + ALL E+ L + G +DL L L+ DR + LG G Sbjct: 6 IIPIHPAPSPAANAPALLQEIAAAL-DVLLLSGRRHCIDLGSLPLSPADRDLLRETLGTG 64 Query: 94 EVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK-LLEDKLEAGCAPLAL 142 E+ R++ S I+E G+W VR + LL + LE P + Sbjct: 65 EI--RMELEALGNSRIEETGVPGVWWVRHSSEDGILLTESLEVCHVPEIV 112 >UniRef50_D1BNA7 Putative uncharacterized protein n=3 Tax=Veillonella RepID=D1BNA7_VEIPT Length = 125 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 3/122 (2%) Query: 162 DGLMNGLPLAHELLAHVR--NPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQI-RTIG 218 + N + +EL ++ + +SI + + ++E +++ + G G+I I Sbjct: 3 ENYGNVRAVLNELRLALKNLRETGETYSIYIEKTGLTEEEQVEVLETLGRGHITINFNET 62 Query: 219 YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQW 278 + +W + +L + EI P V A ED+ + + L Sbjct: 63 DQPVEWYESQFSGIWIGTYKNGRDDSILHTVEIAKYPVVAGAYIEDMELAEEDLQSWIDA 122 Query: 279 LA 280 Sbjct: 123 AG 124 >UniRef50_A5EUI6 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EUI6_BRASB Length = 133 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 2/115 (1%) Query: 168 LPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYIN 225 L E+LA + + + + I+L +LP+ + G G + G G Sbjct: 14 RALFAEILAKLESLLATGETNRIDLRRLPLPADGLHKIRDFLGEGEVHATVRGVGSCIFQ 73 Query: 226 ATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLA 280 T VW + +T + E E+ +PE++ + ++ DS + L + Sbjct: 74 ETRTYGVWWMTQRNTAGDVIGEFIEVARVPELLKSGDVEIRDSVEDLRMRLATVG 128 Score = 87.4 bits (215), Expect = 4e-16, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 37 MAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEGE 94 MA A + AL E+ +L GE +DL L L AD H I LGEGE Sbjct: 1 MAGHVTSAAEAMIRALFAEILAKLESLLAT-GETNRIDLRRLPLPADGLHKIRDFLGEGE 59 Query: 95 VSVRIQQADDSESEIQEAIFCGLWRVRRRR-GEKLLEDKLEAGCAPLALWQ 144 V ++ QE G+W + +R ++ + +E P L Sbjct: 60 VHATVRGVGSCI--FQETRTYGVWWMTQRNTAGDVIGEFIEVARVPELLKS 108 >UniRef50_Q3SJ38 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJ38_THIDA Length = 136 Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 2/117 (1%) Query: 147 TQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLS 204 T+ ++P P N LPL E+ H+ + + +I+L+ LP++ D +L Sbjct: 2 TREIIPILPEAPVETARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLR 61 Query: 205 RLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAA 261 G G + + G S ++ T VW + + + E+ +PE+V + Sbjct: 62 AELGGGEVSVTLHADGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKSP 118 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 7/138 (5%) Query: 29 CQVNDEPSMAA-LEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHF 85 P + + A S + LL E+ L GE +DL L L D + Sbjct: 1 MTREIIPILPEAPVETARSGNALPLLREIAEHLHHLLET-GEASTIDLSALPLTPGDLEW 59 Query: 86 INTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEK-LLEDKLEAGCAPLALWQ 144 + LG GEVS + D S + E F G+W + R + + +E P + Sbjct: 60 LRAELGGGEVS--VTLHADGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKS 117 Query: 145 AATQNLLPTDSLLPPPID 162 +L+ D Sbjct: 118 PRADVAAARAALVLRMAD 135 >UniRef50_C5S7N4 HupH hydrogenase expression protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7N4_CHRVI Length = 155 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 167 GLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 LP+ HE+ + + I+L +P D L+ + G G +Q R G + I Sbjct: 27 ALPILHEIRHALERLLASGEETRIDLHSMPFGPGDLERLTAVLGSGEVQARVEALGPTLI 86 Query: 225 NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAP 284 T + VW + L EI IPE++ PEDL +S L + A Sbjct: 87 QETAIPGVWLVDYRGLEDQRLSYQIEIAAIPEILRPRPEDLAESLGALEDRLSESGLDAA 146 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 45 HSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEGEVSVRIQQA 102 + +L+E++H L ER GE +DL + D + +LG GEV R++ Sbjct: 23 EHGHALPILHEIRHAL-ERLLASGEETRIDLHSMPFGPGDLERLTAVLGSGEVQARVEAL 81 Query: 103 DDSESEIQEAIFCGLWRVRRRR-GEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPI 161 + IQE G+W V R ++ L ++E P L +L Sbjct: 82 GPTL--IQETAIPGVWLVDYRGLEDQRLSYQIEIAAIPEILRPRPEDLAESLGALEDRLS 139 Query: 162 DGLMNGLP 169 + ++ Sbjct: 140 ESGLDAAA 147 >UniRef50_A1HTR0 HupH hydrogenase expression protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTR0_9FIRM Length = 126 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 167 GLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQI-RTIGYGESY 223 + E+ A + + H++ + ++ +++ADR + G G +++ + Sbjct: 11 ARAVLTEIAAALERFARTGETHTLFINKMGLTQADREAIHAFLGQGTVRVQLNDTAEPAE 70 Query: 224 INATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDL----VDSAQRLSEV 275 T + VW+ D + P+LE+ EI P V A PED+ + +RL+E+ Sbjct: 71 WLETEIAGVWYGVFYDASRRPVLETIEISDFPRVAAAQPEDIAAKSAELRRRLTEL 126 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 3/119 (2%) Query: 46 SPQVIALLNELQHQLSERQPPLGEVLAV-DLLNLNADDRHFINTLLGEGEVSVRIQQADD 104 S A+L E+ L + + L DR I+ LG+G V V++ + Sbjct: 8 SAHARAVLTEIAAALERFARTGETHTLFINKMGLTQADREAIHAFLGQGTVRVQLNDTAE 67 Query: 105 SESEIQEAIFCGLWR-VRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPID 162 +E E G+W V + + + +E P + L + Sbjct: 68 P-AEWLETEIAGVWYGVFYDASRRPVLETIEISDFPRVAAAQPEDIAAKSAELRRRLTE 125 >UniRef50_C8S1B1 HupH hydrogenase expression protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1B1_9RHOB Length = 132 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 167 GLPLAHELLAHVRNPDAQP--HSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYI 224 + E+ + A +++L LP++ ADR L G G + + G S I Sbjct: 11 AQSILREVARALAALAATGARDAVDLRSLPMTAADRAELETALGRGEVSVTLQSAGRSEI 70 Query: 225 NATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDL-VDSAQRLSEVCQWLAEAA 283 T VW LR E EI P+P++++ +++ SA L+E+ EAA Sbjct: 71 WETRFAGVWWLRHFGGDDRIAAEVIEIAPVPDILVTHADEITAASALMLAELASMTKEAA 130 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 40 LEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDL--LNLNADDRHFINTLLGEGEVSV 97 + ++L E+ L+ AVDL L + A DR + T LG GEVSV Sbjct: 2 NIDKLRTGMAQSILREVARALAALAATGARD-AVDLRSLPMTAADRAELETALGRGEVSV 60 Query: 98 RIQQADDSESEIQEAIFCGLWRVRRRRG-EKLLEDKLEAGCAPLALWQAATQNLLPTDSL 156 +Q A SEI E F G+W +R G +++ + +E P L A + + + Sbjct: 61 TLQSAG--RSEIWETRFAGVWWLRHFGGDDRIAAEVIEIAPVPDILVTHADEITAASALM 118 Query: 157 LPPPI 161 L Sbjct: 119 LAELA 123 >UniRef50_Q9ANQ3 ID32 n=1 Tax=Bradyrhizobium japonicum RepID=Q9ANQ3_BRAJA Length = 151 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 41 EQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSV 97 E+ P L++ + + ++ L L N + +R I+ LLGEGEV+ Sbjct: 47 ERARKYPNAALLMSNVAAAVGGQRSGDPTQL-YGLANFSDAERKLIDELLGEGEVTG 102 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.136 0.378 Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,607,730,770 Number of Sequences: 3077464 Number of extensions: 60234771 Number of successful extensions: 242333 Number of sequences better than 1.0e-01: 49 Number of HSP's better than 0.1 without gapping: 93 Number of HSP's successfully gapped in prelim test: 30 Number of HSP's that attempted gapping in prelim test: 241760 Number of HSP's gapped (non-prelim): 160 length of query: 285 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 158 effective length of database: 649,558,428 effective search space: 102630231624 effective search space used: 102630231624 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 92 (40.0 bits)