07/01/2012 01:23:10 : INFO  : Run start: Sat Jan  7 01:23:09 GMT 2012
07/01/2012 01:23:11 : INFO  : Initialised job
07/01/2012 01:23:11 : INFO  : Renaming log file 'phyre2_20120107_012309.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/39500de3398df43d/phyre_20120107_012309.log'
07/01/2012 01:23:11 : INFO  : Initialised job:
Sequence
>batch____
MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGS
TTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIID
ADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMAD
SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGAL
VNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNS
ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVG
SKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGT
PAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ

07/01/2012 01:23:11 : INFO  : Checked sequence
07/01/2012 01:23:12 : INFO  : Finding homologues with PSI-BLAST
07/01/2012 01:23:12 : INFO  : PSI-BLAST 3 iterations
07/01/2012 01:25:48 : INFO  : PSI-BLAST 5 iterations
07/01/2012 01:29:12 : INFO  : Finished PSI-BLAST
07/01/2012 01:29:13 : INFO  : Running Buildali to generate a3m file
07/01/2012 02:12:27 : INFO  : Converting to HMM
07/01/2012 02:12:35 : INFO  : Calibrating HMM
07/01/2012 02:12:52 : INFO  : Searching HMM database
07/01/2012 02:21:29 : INFO  : Finished buildali
07/01/2012 02:21:30 : INFO  : Predicting secondary structure
07/01/2012 02:21:35 : INFO  : Predicted secondary structure (PSI-Pred)
07/01/2012 02:21:36 : INFO  : Predicting Disordered regions
07/01/2012 02:21:39 : INFO  : Predicted Disorder (Disopred)
07/01/2012 02:21:40 : INFO  : Running memsat_svm check
07/01/2012 02:24:55 : INFO  : Running memsat_svm full
07/01/2012 02:33:42 : INFO  : Predicted Transmembrane (memsat_svm) ID '39500de3398df43d'
07/01/2012 02:33:44 : INFO  : Initialising fold library search
07/01/2012 02:33:47 : INFO  : Initialised search input
07/01/2012 02:33:49 : INFO  : Building Ensemble models
07/01/2012 02:33:52 : INFO  : Building hh.c4a8aI_.model.1.pdb
07/01/2012 02:34:06 : INFO  : Building c4a8aI_.1.pdb
07/01/2012 02:34:19 : INFO  : Building c3pv5B_.2.pdb
07/01/2012 02:34:30 : INFO  : Building c3stjC_.3.pdb
07/01/2012 02:34:40 : INFO  : Building c1ky9A_.4.pdb
07/01/2012 02:34:51 : INFO  : Building c3pv4A_.5.pdb
07/01/2012 02:35:04 : INFO  : Building c3gdsA_.6.pdb
07/01/2012 02:35:16 : INFO  : Building c3qo6B_.7.pdb
07/01/2012 02:35:29 : INFO  : Building c1lcyA_.8.pdb
07/01/2012 02:35:41 : INFO  : Building c2z9iB_.9.pdb
07/01/2012 02:35:51 : INFO  : Building c2r3yC_.10.pdb
07/01/2012 02:36:00 : INFO  : Building d1ky9a2.11.pdb
07/01/2012 02:36:10 : INFO  : Building d1l1ja_.12.pdb
07/01/2012 02:36:21 : INFO  : Building c2rceI_.13.pdb
07/01/2012 02:36:31 : INFO  : Building c3stiC_.14.pdb
07/01/2012 02:36:40 : INFO  : Building d2qf3a1.15.pdb
07/01/2012 02:36:51 : INFO  : Building c3nziA_.16.pdb
07/01/2012 02:37:01 : INFO  : Building d2z9ia2.17.pdb
07/01/2012 02:37:12 : INFO  : Building d1lcya2.18.pdb
07/01/2012 02:37:23 : INFO  : Building c3nwuB_.19.pdb
07/01/2012 02:37:36 : INFO  : Building c3k6zA_.20.pdb
07/01/2012 02:38:05 : INFO  : Finished HH model building
07/01/2012 02:38:07 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
07/01/2012 02:39:03 : INFO  : html domain output complete ID '39500de3398df43d'
07/01/2012 03:43:26 : INFO  : Run end  : Sat Jan  7 03:43:26 GMT 2012
