Phyre 2 alignment of P0C0V0 with c1v5qA_

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Job Description | P0C0V0
Confidence | 99.00% | Date | Thu Jan 5 11:30:02 GMT 2012
Rank | 225 | Aligned Residues | 77
% Identity | 14% | Template | c1v5qA_
PDB info | PDB header:protein binding | Chain: A: PDB Molecule:glutamate receptor interacting protein 1a-l | PDBTitle: solution structure of the pdz domain from mouse glutamate2 receptor interacting protein 1a-l (grip1) homolog
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 389 | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . |  |  | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . |  | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . |  |  | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | S | S | S | I | F | N | G | I | E | G | A | E | M | S | N | . | . | K | G | K | D | Q | G | V | V | V | N | N | V | K | T | G | T | P | A | A | Q | I | G | . | L | K | K | G | D | V | I | I | G | A | N | Q | Q | A | V | K | . | . | N | I | A | E | L | R | K | V | L | D | S | K | P | S | V | L | A | L | N | I | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | D | P | V | T | G | F | G | I | Q | L | Q | G | S | V | F | A | T | E | T | L | S | S | P | P | L | I | S | Y | I | E | A | D | S | P | A | E | R | C | G | V | L | Q | I | G | D | R | V | M | A | I | N | G | I | P | T | E | D | S | T | F | E | E | A | N | Q | L | L | R | D | S | S | I | T | S | K | V | T | L | E
Template Known Secondary structure |  |  |  | S | S | S | S | S |  |  |  |  |  |  |  | S |  |  | S | S | S |  | S | S |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  | S |  |  |  |  | T | T |  |  |  |  |  |  | T | T |  |  | S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | .
|  | 464 | .
Predicted Secondary structure |  |  |
Query SS confidence |  |  |
Query Sequence |  | R | G
Query Conservation |  |  |
Alig confidence |  |  |
Template Conservation |  |  |
Template Sequence |  | I | E
Template Known Secondary structure |  |  |
Template Predicted Secondary structure |  |  |
Template SS confidence |  |  |
|  | 103 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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