Phyre 2 Results for P0C0V0

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Email | l.a.kelley@imperial.ac.uk
Description | P0C0V0
Date | Thu Jan 5 11:30:02 GMT 2012
Unique Job ID | 39500de3398df43d

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c4a8aI_
Top template information
PDB header:hydrolase/hydrolase Chain: I: PDB Molecule:periplasmic ph-dependent serine endoprotease degq; PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme
Confidence and coverage
Confidence: | 100.0% | Coverage: | 81%
385 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | K | T | T | L | A | L | S | A | L | A | L | S | L | G | L | A | L | S | P | L | S | A | T | A | A | E | T | S | S | A | T | T | A | Q | Q | M | P | S | L | A | P | M | L | E | K | V | M | P | S | V | V | S | I | N | V | E | G | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | T | V | N | T | P | R | M | P | R | N | F | Q | Q | F | F | G | D | D | S | P | F | C | Q | E | G | S | P | F | Q | S | S | P | F | C | Q | G | G | Q | G | G | N | G | G | G | Q | Q | Q | K | F | M | A | L | G | S | G | V | I | I | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | D | K | G | Y | V | V | T | N | N | H | V | V | D | N | A | T | V | I | K | V | Q | L | S | D | G | R | K | F | D | A | K | M | V | G | K | D | P | R | S | D | I | A | L | I | Q | I | Q | N | P | K | N | L | T | A | I | K | M | A | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | D | A | L | R | V | G | D | Y | T | V | A | I | G | N | P | F | G | L | G | E | T | V | T | S | G | I | V | S | A | L | G | R | S | G | L | N | A | E | N | Y | E | N | F | I | Q | T | D | A | A | I | N | R | G | N | S | G | G | A | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | N | L | N | G | E | L | I | G | I | N | T | A | I | L | A | P | D | G | G | N | I | G | I | G | F | A | I | P | S | N | M | V | K | N | L | T | S | Q | M | V | E | Y | G | Q | V | K | R | G | E | L | G | I | M | G | T | E | L | N | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | E | L | A | K | A | M | K | V | D | A | Q | R | G | A | F | V | S | Q | V | L | P | N | S | S | A | A | K | A | G | I | K | A | G | D | V | I | T | S | L | N | G | K | P | I | S | S | F | A | A | L | R | A | Q | V | G | T | M | P | V | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | S | K | L | T | L | G | L | L | R | D | G | K | Q | V | N | V | N | L | E | L | Q | Q | S | S | Q | N | Q | V | D | S | S | S | I | F | N | G | I | E | G | A | E | M | S | N | K | G | K | D | Q | G | V | V | V | N | N | V | K | T | G | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | .
Sequence |  | P | A | A | Q | I | G | L | K | K | G | D | V | I | I | G | A | N | Q | Q | A | V | K | N | I | A | E | L | R | K | V | L | D | S | K | P | S | V | L | A | L | N | I | Q | R | G | D | S | T | I | Y | L | L | M | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c4a8aI_ |

### PDB 4a8a chain I

Region: 37 - 474
Aligned: 385
Modelled: 392
Confidence: 100.0%
Identity: 62%
PDB header:hydrolase/hydrolase
Chain: I: PDB Molecule:periplasmic ph-dependent serine endoprotease degq;
PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme

Phyre2
2 |
| c3pv5B_ |

### PDB 3pv5 chain B

Region: 39 - 473
Aligned: 374
Modelled: 389
Confidence: 100.0%
Identity: 46%
PDB header:hydrolase
Chain: B: PDB Molecule:degq;
PDBTitle: structure of legionella fallonii degq (n189g/p190g variant)

Phyre2
3 |
| c3stjC_ |

### PDB 3stj chain C

Region: 37 - 383
Aligned: 300
Modelled: 300
Confidence: 100.0%
Identity: 70%
PDB header:hydrolase
Chain: C: PDB Molecule:protease degq;
PDBTitle: crystal structure of the protease + pdz1 domain of degq from2 escherichia coli

Phyre2
4 |
| c1ky9A_ |

### PDB 1ky9 chain A

Region: 37 - 379
Aligned: 311
Modelled: 310
Confidence: 100.0%
Identity: 94%
PDB header:hydrolase
Chain: A: PDB Molecule:protease do;
PDBTitle: crystal structure of degp (htra)

Phyre2
5 |
| c3pv4A_ |

### PDB 3pv4 chain A

Region: 38 - 382
Aligned: 280
Modelled: 301
Confidence: 100.0%
Identity: 52%
PDB header:hydrolase
Chain: A: PDB Molecule:degq;
PDBTitle: structure of legionella fallonii degq (delta-pdz2 variant)

Phyre2
6 |
| c3gdsA_ |

### PDB 3gds chain A

Region: 33 - 379
Aligned: 291
Modelled: 307
Confidence: 100.0%
Identity: 41%
PDB header:hydrolase/hydrolase activator
Chain: A: PDB Molecule:protease degs;
PDBTitle: crystal structure of degs h198p/d320a mutant modified by dfp in2 complex with dnrdgnvyyf peptide

Phyre2
7 |
| c3qo6B_ |

### PDB 3qo6 chain B

Region: 31 - 386
Aligned: 313
Modelled: 319
Confidence: 100.0%
Identity: 36%
PDB header:photosynthesis
Chain: B: PDB Molecule:protease do-like 1, chloroplastic;
PDBTitle: crystal structure analysis of the plant protease deg1

Phyre2
8 |
| c1lcyA_ |

### PDB 1lcy chain A

Region: 30 - 384
Aligned: 290
Modelled: 314
Confidence: 100.0%
Identity: 34%
PDB header:hydrolase
Chain: A: PDB Molecule:htra2 serine protease;
PDBTitle: crystal structure of the mitochondrial serine protease htra2

Phyre2
9 |
| c2z9iB_ |

### PDB 2z9i chain B

Region: 37 - 374
Aligned: 267
Modelled: 272
Confidence: 100.0%
Identity: 45%
PDB header:hydrolase
Chain: B: PDB Molecule:probable serine protease pepd;
PDBTitle: crystal structure of rv0983 from mycobacterium tuberculosis-2 proteolytically active form

Phyre2
10 |
| c2r3yC_ |

### PDB 2r3y chain C

Region: 37 - 384
Aligned: 271
Modelled: 285
Confidence: 100.0%
Identity: 44%
PDB header:hydrolase/hydrolase activator
Chain: C: PDB Molecule:protease degs;
PDBTitle: crystal structure of the degs protease in complex with the2 ywf activating peptide

Phyre2
11 |
| d1ky9a2 |

### PDB 1ky9 chain A domain 2

Region: 37 - 285
Aligned: 217
Modelled: 222
Confidence: 100.0%
Identity: 98%
Fold: Trypsin-like serine proteases
Superfamily: Trypsin-like serine proteases
Family: Prokaryotic proteases

Phyre2
12 |
| d1l1ja_ |

### PDB 1l1j chain A

Region: 39 - 280
Aligned: 217
Modelled: 219
Confidence: 100.0%
Identity: 44%
Fold: Trypsin-like serine proteases
Superfamily: Trypsin-like serine proteases
Family: Prokaryotic proteases

Phyre2
13 |
| c2rceI_ |

### PDB 2rce chain I

Region: 33 - 283
Aligned: 195
Modelled: 205
Confidence: 100.0%
Identity: 44%
PDB header:hydrolase
Chain: I: PDB Molecule:protease degs;
PDBTitle: dfp modified degs delta pdz

Phyre2
14 |
| c3stiC_ |

### PDB 3sti chain C

Region: 37 - 283
Aligned: 183
Modelled: 192
Confidence: 100.0%
Identity: 75%
PDB header:hydrolase
Chain: C: PDB Molecule:protease degq;
PDBTitle: crystal structure of the protease domain of degq from escherichia coli

Phyre2
15 |
| d2qf3a1 |

### PDB 2qf3 chain A domain 1

Region: 37 - 284
Aligned: 189
Modelled: 204
Confidence: 100.0%
Identity: 51%
Fold: Trypsin-like serine proteases
Superfamily: Trypsin-like serine proteases
Family: Prokaryotic proteases

Phyre2
16 |
| c3nziA_ |

### PDB 3nzi chain A

Region: 41 - 283
Aligned: 196
Modelled: 202
Confidence: 100.0%
Identity: 46%
PDB header:hydrolase/hydrolase substrate
Chain: A: PDB Molecule:serine protease htra1;
PDBTitle: substrate induced remodeling of the active site regulates htra12 activity

Phyre2
17 |
| d2z9ia2 |

### PDB 2z9i chain A domain 2

Region: 40 - 285
Aligned: 192
Modelled: 194
Confidence: 100.0%
Identity: 47%
Fold: Trypsin-like serine proteases
Superfamily: Trypsin-like serine proteases
Family: Prokaryotic proteases

Phyre2
18 |
| d1lcya2 |

### PDB 1lcy chain A domain 2

Region: 30 - 277
Aligned: 195
Modelled: 207
Confidence: 100.0%
Identity: 42%
Fold: Trypsin-like serine proteases
Superfamily: Trypsin-like serine proteases
Family: Prokaryotic proteases

Phyre2
19 |
| c3nwuB_ |

### PDB 3nwu chain B

Region: 31 - 277
Aligned: 182
Modelled: 198
Confidence: 100.0%
Identity: 48%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease htra1;
PDBTitle: substrate induced remodeling of the active site regulates htra12 activity

Phyre2
20 |
| c3k6zA_ |

### PDB 3k6z chain A

Region: 31 - 280
Aligned: 189
Modelled: 197
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:possible membrane-associated serine protease;
PDBTitle: crystal structure of rv3671c protease, inactive form

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c4a8aI_ |
|  | 100.0 | 62 | PDB header:hydrolase/hydrolase Chain: I: PDB Molecule:periplasmic ph-dependent serine endoprotease degq; PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme
2 | c3pv5B_ |
|  | 100.0 | 46 | PDB header:hydrolase Chain: B: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (n189g/p190g variant)
3 | c3stjC_ |
|  | 100.0 | 70 | PDB header:hydrolase Chain: C: PDB Molecule:protease degq; PDBTitle: crystal structure of the protease + pdz1 domain of degq from2 escherichia coli
4 | c1ky9A_ |
|  | 100.0 | 94 | PDB header:hydrolase Chain: A: PDB Molecule:protease do; PDBTitle: crystal structure of degp (htra)
5 | c3pv4A_ |
|  | 100.0 | 52 | PDB header:hydrolase Chain: A: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (delta-pdz2 variant)
6 | c3gdsA_ |
|  | 100.0 | 41 | PDB header:hydrolase/hydrolase activator Chain: A: PDB Molecule:protease degs; PDBTitle: crystal structure of degs h198p/d320a mutant modified by dfp in2 complex with dnrdgnvyyf peptide
7 | c3qo6B_ |
|  | 100.0 | 36 | PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1
8 | c1lcyA_ |
|  | 100.0 | 34 | PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2
9 | c2z9iB_ |
|  | 100.0 | 45 | PDB header:hydrolase Chain: B: PDB Molecule:probable serine protease pepd; PDBTitle: crystal structure of rv0983 from mycobacterium tuberculosis-2 proteolytically active form
10 | c2r3yC_ |
|  | 100.0 | 44 | PDB header:hydrolase/hydrolase activator Chain: C: PDB Molecule:protease degs; PDBTitle: crystal structure of the degs protease in complex with the2 ywf activating peptide
11 | d1ky9a2 |
|  | 100.0 | 98 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
12 | d1l1ja_ |
|  | 100.0 | 44 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
13 | c2rceI_ |
|  | 100.0 | 44 | PDB header:hydrolase Chain: I: PDB Molecule:protease degs; PDBTitle: dfp modified degs delta pdz
14 | c3stiC_ |
|  | 100.0 | 75 | PDB header:hydrolase Chain: C: PDB Molecule:protease degq; PDBTitle: crystal structure of the protease domain of degq from escherichia coli
15 | d2qf3a1 |
|  | 100.0 | 51 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
16 | c3nziA_ |
|  | 100.0 | 46 | PDB header:hydrolase/hydrolase substrate Chain: A: PDB Molecule:serine protease htra1; PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
17 | d2z9ia2 |
|  | 100.0 | 47 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
18 | d1lcya2 |
|  | 100.0 | 42 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
19 | c3nwuB_ |
|  | 100.0 | 48 | PDB header:hydrolase Chain: B: PDB Molecule:serine protease htra1; PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
20 | c3k6zA_ |
|  | 100.0 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:possible membrane-associated serine protease; PDBTitle: crystal structure of rv3671c protease, inactive form
21 | c3mmgB_ |
| not modelled | 100.0 | 20 | PDB header:viral protein, hydrolase Chain: B: PDB Molecule:nuclear inclusion protein a; PDBTitle: crystal structure of tobacco vein mottling virus protease
22 | c1zyoA_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:serine protease; PDBTitle: crystal structure of the serine protease domain of sesbania mosaic2 virus polyprotein
23 | d1q31a_ |
| not modelled | 99.9 | 16 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases
24 | c2w5eB_ |
| not modelled | 99.9 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:putative serine protease; PDBTitle: structural and biochemical analysis of human pathogenic2 astrovirus serine protease at 2.0 angstrom resolution
25 | d1lvmb_ |
| not modelled | 99.9 | 17 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases
26 | d1qtfa_ |
| not modelled | 99.9 | 26 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
27 | c2qt5A_ |
| not modelled | 99.9 | 21 | PDB header:peptide binding protein Chain: A: PDB Molecule:glutamate receptor-interacting protein 1; PDBTitle: crystal structure of grip1 pdz12 in complex with the fras12 peptide
28 | c2ka9A_ |
| not modelled | 99.9 | 20 | PDB header:cell adhesion Chain: A: PDB Molecule:disks large homolog 4; PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide
29 | c1p1dA_ |
| not modelled | 99.9 | 17 | PDB header:protein binding Chain: A: PDB Molecule:glutamate receptor interacting protein; PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins
30 | d1agja_ |
| not modelled | 99.9 | 26 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
31 | c3rleA_ |
| not modelled | 99.9 | 21 | PDB header:membrane protein Chain: A: PDB Molecule:golgi reassembly-stacking protein 2; PDBTitle: crystal structure of grasp55 grasp domain (residues 7-208)
32 | c3r0hA_ |
| not modelled | 99.9 | 16 | PDB header:peptide binding protein Chain: A: PDB Molecule:inactivation-no-after-potential d protein; PDBTitle: structure of inad pdz45 in complex with ng2 peptide
33 | c2vidA_ |
| not modelled | 99.9 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:serine protease splb; PDBTitle: serine protease splb from staphylococcus aureus at 1.8a2 resolution
34 | c2xkxB_ |
| not modelled | 99.9 | 20 | PDB header:structural protein Chain: B: PDB Molecule:disks large homolog 4; PDBTitle: single particle analysis of psd-95 in negative stain
35 | c1u3bA_ |
| not modelled | 99.8 | 19 | PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains
36 | c1w9qB_ |
| not modelled | 99.8 | 22 | PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide
37 | c2w7uC_ |
| not modelled | 99.8 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:serine protease spla; PDBTitle: spla serine protease of staphylococcus aureus (2.4a)
38 | c2as9B_ |
| not modelled | 99.8 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:serine protease; PDBTitle: functional and structural characterization of spl proteases2 from staphylococcus aureus
39 | c2b0fA_ |
| not modelled | 99.8 | 21 | PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:picornain 3c (protease 3c) (p3c); PDBTitle: nmr structure of the human rhinovirus 3c protease (serotype 14) with2 covalently bound ace-lealfq-ethylpropionate inhibitor
40 | d1cqqa_ |
| not modelled | 99.8 | 15 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold
41 | d2qaaa1 |
| not modelled | 99.8 | 17 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
42 | d1l1na_ |
| not modelled | 99.8 | 16 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold
43 | d2h5ca1 |
| not modelled | 99.7 | 17 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
44 | c2ouaA_ |
| not modelled | 99.7 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:serine protease; PDBTitle: crystal structure of nocardiopsis protease (napase)
45 | c2p3wB_ |
| not modelled | 99.7 | 28 | PDB header:protein binding Chain: B: PDB Molecule:probable serine protease htra3; PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv)
46 | d1ky9a1 |
| not modelled | 99.7 | 97 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
47 | c2joaA_ |
| not modelled | 99.7 | 25 | PDB header:protein binding Chain: A: PDB Molecule:serine protease htra1; PDBTitle: htra1 bound to an optimized peptide: nmr assignment of pdz2 domain and ligand resonances
48 | d1lcya1 |
| not modelled | 99.7 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
49 | c2o8lA_ |
| not modelled | 99.7 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:v8 protease; PDBTitle: structure of v8 protease from staphylococcus aureus
50 | d2o8la1 |
| not modelled | 99.7 | 21 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
51 | c1qy6A_ |
| not modelled | 99.7 | 21 | PDB header:protease Chain: A: PDB Molecule:serine protease; PDBTitle: structue of v8 protease from staphylococcus aureus
52 | d2sfaa_ |
| not modelled | 99.7 | 17 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
53 | d2sgaa_ |
| not modelled | 99.6 | 17 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
54 | c2pfeA_ |
| not modelled | 99.6 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:alkaline serine protease; PDBTitle: crystal structure of thermobifida fusca protease a (tfpa)
55 | c1wczA_ |
| not modelled | 99.6 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:glutamyl endopeptidase; PDBTitle: crystal structure of an alkaline form of v8 protease from2 staphylococcus aureus
56 | d2z9ia1 |
| not modelled | 99.6 | 32 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
57 | c2ea3A_ |
| not modelled | 99.5 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:chymotrypsin; PDBTitle: crystal structure of cellulomonas bogoriensis chymotrypsin
58 | d1hpga_ |
| not modelled | 99.5 | 17 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
59 | c1z87A_ |
| not modelled | 99.5 | 14 | PDB header:protein binding Chain: A: PDB Molecule:alpha-1-syntrophin; PDBTitle: solution structure of the split ph-pdz supramodule of alpha-2 syntrophin
60 | d1p3ca_ |
| not modelled | 99.5 | 15 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
61 | d1ky9b2 |
| not modelled | 99.5 | 99 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
62 | c2kl1A_ |
| not modelled | 99.4 | 28 | PDB header:protein binding Chain: A: PDB Molecule:ylbl protein; PDBTitle: solution structure of gtr34c from geobacillus thermodenitrificans.2 northeast structural genomics consortium target gtr34c
63 | d1arba_ |
| not modelled | 99.4 | 12 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
64 | d1ozia_ |
| not modelled | 99.4 | 17 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
65 | c2krgA_ |
| not modelled | 99.4 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1; PDBTitle: solution structure of human sodium/ hydrogen exchange2 regulatory factor 1(150-358)
66 | c3i18A_ |
| not modelled | 99.4 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2051 protein; PDBTitle: crystal structure of the pdz domain of the sdrc-like protein2 (lmo2051) from listeria monocytogenes, northeast structural3 genomics consortium target lmr166b
67 | c3eggC_ |
| not modelled | 99.4 | 18 | PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin
68 | d2i4sa1 |
| not modelled | 99.4 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like
69 | d1p1da2 |
| not modelled | 99.4 | 19 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
70 | d1sota1 |
| not modelled | 99.3 | 34 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
71 | c2kjpA_ |
| not modelled | 99.3 | 32 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ylbl; PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a
72 | d1fc6a3 |
| not modelled | 99.3 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Tail specific protease PDZ domain
73 | c2kjdA_ |
| not modelled | 99.3 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:sodium/hydrogen exchange regulatory cofactor nhe- PDBTitle: solution structure of extended pdz2 domain from nherf1 (150-2 270)
74 | c2jikB_ |
| not modelled | 99.3 | 21 | PDB header:membrane protein Chain: B: PDB Molecule:synaptojanin-2 binding protein; PDBTitle: crystal structure of pdz domain of synaptojanin-2 binding2 protein
75 | c3diwB_ |
| not modelled | 99.3 | 24 | PDB header:signaling protein/cell adhesion Chain: B: PDB Molecule:tax1-binding protein 3; PDBTitle: c-terminal beta-catenin bound tip-1 structure
76 | c2jilA_ |
| not modelled | 99.3 | 21 | PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1)
77 | c3l4fD_ |
| not modelled | 99.3 | 19 | PDB header:signaling protein/protein binding Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein PDBTitle: crystal structure of betapix coiled-coil domain and shank2 pdz complex
78 | d1x5qa1 |
| not modelled | 99.3 | 27 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
79 | c2v90E_ |
| not modelled | 99.3 | 18 | PDB header:protein-binding Chain: E: PDB Molecule:pdz domain-containing protein 3; PDBTitle: crystal structure of the 3rd pdz domain of intestine- and2 kidney-enriched pdz domain ikepp (pdzd3)
80 | d1um1a_ |
| not modelled | 99.3 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
81 | d2fe5a1 |
| not modelled | 99.3 | 16 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
82 | d1uhpa_ |
| not modelled | 99.3 | 25 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
83 | d1rgwa_ |
| not modelled | 99.3 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
84 | d1d5ga_ |
| not modelled | 99.3 | 17 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
85 | d1wfga_ |
| not modelled | 99.3 | 15 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
86 | d1wh1a_ |
| not modelled | 99.3 | 26 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
87 | c2iwnA_ |
| not modelled | 99.3 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 3rd pdz domain of multiple pdz domain protein mpdz (casp2 target)
88 | d1t2ma1 |
| not modelled | 99.3 | 19 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
89 | d2byga1 |
| not modelled | 99.3 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
90 | d1q7xa_ |
| not modelled | 99.3 | 16 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
91 | d1m5za_ |
| not modelled | 99.3 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
92 | c2db5A_ |
| not modelled | 99.3 | 20 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the first pdz domain of inad-like2 protein
93 | c3qglD_ |
| not modelled | 99.3 | 23 | PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3
94 | d2f0aa1 |
| not modelled | 99.3 | 24 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
95 | c2o2tB_ |
| not modelled | 99.3 | 28 | PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 1st pdz domain of mpdz
96 | d1ujda_ |
| not modelled | 99.3 | 15 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
97 | d1ry4a_ |
| not modelled | 99.3 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
98 | c2vwrA_ |
| not modelled | 99.3 | 21 | PDB header:protein-binding Chain: A: PDB Molecule:ligand of numb protein x 2; PDBTitle: crystal structure of the second pdz domain of numb-binding2 protein 2
99 | d1ihja_ |
| not modelled | 99.3 | 21 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
100 | c2djtA_ |
| not modelled | 99.2 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structures of the pdz domain of human unnamed2 protein product
101 | d1wf8a1 |
| not modelled | 99.2 | 17 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
102 | c2ogpA_ |
| not modelled | 99.2 | 26 | PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of the second pdz domain of par-3
103 | c2q3gA_ |
| not modelled | 99.2 | 17 | PDB header:structural genomics Chain: A: PDB Molecule:pdz and lim domain protein 7; PDBTitle: structure of the pdz domain of human pdlim7 bound to a c-2 terminal extension from human beta-tropomyosin
104 | d2hgaa1 |
| not modelled | 99.2 | 26 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:MTH1368 C-terminal domain-like
105 | d1whaa_ |
| not modelled | 99.2 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
106 | c2komA_ |
| not modelled | 99.2 | 24 | PDB header:signaling protein Chain: A: PDB Molecule:partitioning defective 3 homolog; PDBTitle: solution structure of humar par-3b pdz2 (residues 451-549)
107 | d1q3oa_ |
| not modelled | 99.2 | 21 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
108 | c2gzvA_ |
| not modelled | 99.2 | 24 | PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target)
109 | c3k1rA_ |
| not modelled | 99.2 | 16 | PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
110 | d1rzxa_ |
| not modelled | 99.2 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
111 | d2f5ya1 |
| not modelled | 99.2 | 28 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
112 | c2k1zA_ |
| not modelled | 99.2 | 22 | PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of par-3 pdz3
113 | c2fneB_ |
| not modelled | 99.2 | 22 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 13th pdz domain of mpdz
114 | c2v1wB_ |
| not modelled | 99.2 | 16 | PDB header:structural protein Chain: B: PDB Molecule:pdz and lim domain protein 4; PDBTitle: crystal structure of human lim protein ril (pdlim4) pdz2 domain bound to the c-terminal peptide of human alpha-3 actinin-1
115 | c2iwoA_ |
| not modelled | 99.2 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 12th pdz domain of multiple pdz domain protein mpdz (casp2 target)
116 | c2dm8A_ |
| not modelled | 99.2 | 20 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the eighth pdz domain of human inad-2 like protein
117 | c2dazA_ |
| not modelled | 99.2 | 19 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the 7th pdz domain of inad-like2 protein
118 | c2jreA_ |
| not modelled | 99.2 | 23 | PDB header:de novo protein Chain: A: PDB Molecule:c60-1 pdz domain peptide; PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis
119 | d1nf3c_ |
| not modelled | 99.2 | 17 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
120 | c2iwqA_ |
| not modelled | 99.2 | 15 | PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 7th pdz domain of multiple pdz domain protein mpdz

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0