Phyre 2 alignment of P0C0V0 with c2jsnA_

Return to main results | Retrieve Phyre Job Id

Job Description | P0C0V0
Confidence | 79.38% | Date | Thu Jan 5 11:30:02 GMT 2012
Rank | 381 | Aligned Residues | 43
% Identity | 16% | Template | c2jsnA_
PDB info | PDB header:protein transport | Chain: A: PDB Molecule:trafficking protein particle complex subunit 4; | PDBTitle: solution structure of the atypical pdz-like domain of2 synbindin
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 423 | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . |  |  |  |  |  | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . |  | . | . | . | 460 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Query Sequence |  | A | Q | I | G | L | K | K | G | D | V | I | I | G | A | N | Q | Q | A | V | K | . | . | . | . | . | N | I | A | E | L | R | K | V | L | D | S | K | P | S | . | V | L | A | L | N | I | Q | R | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | R | D | G | I | R | V | G | H | A | V | L | A | I | N | G | M | D | V | N | G | R | Y | T | A | D | G | K | E | V | L | E | Y | L | G | N | P | A | N | Y | P | V | S | I | R | F | G | R | P
Template Known Secondary structure |  |  | S | S | S | T | T | T | T |  |  |  |  |  |  | T | T |  |  |  | B | T | T | B |  | S | S |  |  | B |  |  |  |  |  |  | S | G | G | G |  | S |  |  |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions