BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (249 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 506 e-142 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 170 3e-41 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 167 4e-40 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 131 2e-29 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 113 5e-24 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 112 9e-24 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 111 3e-23 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 109 1e-22 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 103 8e-21 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 95 2e-18 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 95 2e-18 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 94 3e-18 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 93 1e-17 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 92 2e-17 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 90 6e-17 UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=E... 87 5e-16 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 87 6e-16 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 86 1e-15 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 86 1e-15 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 85 2e-15 UniRef50_P0A2T2 Virulence regulon transcriptional activator virF... 84 6e-15 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 82 1e-14 UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio... 82 2e-14 UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax... 81 3e-14 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 80 4e-14 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 80 5e-14 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 79 1e-13 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 77 7e-13 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 77 7e-13 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 77 8e-13 UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11... 75 2e-12 UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Bu... 75 2e-12 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 74 3e-12 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 71 3e-11 UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=B... 71 3e-11 UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein ... 71 4e-11 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 70 5e-11 UniRef50_A3J4H6 Two-component system sensor histidine kinase/res... 70 5e-11 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 70 8e-11 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 70 9e-11 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 70 9e-11 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 69 1e-10 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 69 1e-10 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 69 1e-10 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 69 2e-10 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 69 2e-10 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 67 6e-10 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 67 8e-10 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 66 1e-09 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 65 1e-09 UniRef50_C6VTG9 Transcriptional regulator, AraC family n=1 Tax=D... 65 2e-09 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 65 2e-09 UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-proc... 65 2e-09 UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=... 65 2e-09 UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enteric... 65 3e-09 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 65 3e-09 UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein ... 64 3e-09 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 64 4e-09 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 64 4e-09 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 64 4e-09 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 63 7e-09 UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative... 63 7e-09 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 63 8e-09 UniRef50_D1SRG9 Transcriptional regulator, AraC family n=1 Tax=A... 63 8e-09 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 63 8e-09 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 63 9e-09 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 63 9e-09 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 63 9e-09 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 63 1e-08 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 63 1e-08 UniRef50_A3ZVD0 Xylose operon regulatory protein n=1 Tax=Blastop... 63 1e-08 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 62 2e-08 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 62 2e-08 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 62 2e-08 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 62 2e-08 UniRef50_A5F0T8 Transcriptional regulator, AraC/XylS family n=40... 62 2e-08 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 62 2e-08 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 62 2e-08 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 62 3e-08 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 61 4e-08 UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=A... 61 4e-08 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 61 4e-08 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 61 4e-08 UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=D... 60 5e-08 UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=C... 60 5e-08 UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_... 60 5e-08 UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alka... 60 5e-08 UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostri... 60 5e-08 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 60 5e-08 UniRef50_B7ALJ8 Sensor protein n=1 Tax=Bacteroides eggerthii DSM... 60 6e-08 UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefa... 60 6e-08 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 60 6e-08 UniRef50_B1XRM7 Transcriptional regulator, AraC family n=1 Tax=S... 60 6e-08 UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reineke... 60 7e-08 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 60 7e-08 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 60 7e-08 UniRef50_D1Y5U1 Putative two-component response regulator n=1 Ta... 60 8e-08 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 60 8e-08 UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clost... 60 9e-08 UniRef50_B9K5W8 Transcriptional regulatory protein n=1 Tax=Agrob... 59 1e-07 UniRef50_C0EGI7 Putative uncharacterized protein n=1 Tax=Clostri... 59 1e-07 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 59 1e-07 UniRef50_A3K790 Putative transcriptional regulator protein (AraC... 59 1e-07 UniRef50_UPI00016A75A2 transcriptional regulator, AraC family pr... 59 1e-07 UniRef50_UPI0001C35885 two component AraC family transcriptional... 59 1e-07 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 59 1e-07 UniRef50_A8VRA2 Methyl-accepting chemotaxis sensory transducer n... 59 1e-07 UniRef50_Q1YPI7 Transcriptional regulator, AraC family protein n... 59 2e-07 UniRef50_A8U8W0 Putative uncharacterized protein n=1 Tax=Carnoba... 59 2e-07 UniRef50_B5JY44 Transcriptional regulator, AraC family, putative... 59 2e-07 UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=G... 59 2e-07 UniRef50_C7H1K1 DNA-binding response regulator n=1 Tax=Faecaliba... 59 2e-07 UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_... 59 2e-07 UniRef50_D2MM17 Response regulator receiver domain protein n=1 T... 59 2e-07 UniRef50_A3Y0T9 Response regulator n=4 Tax=Vibrionales RepID=A3Y... 59 2e-07 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 59 2e-07 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 59 2e-07 UniRef50_A5VW33 Transcriptional regulator, AraC family n=36 Tax=... 59 2e-07 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 59 2e-07 UniRef50_P68913 Uncharacterized HTH-type transcriptional regulat... 59 2e-07 UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseud... 59 2e-07 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 58 2e-07 UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=A... 58 3e-07 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 58 3e-07 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 58 3e-07 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 58 3e-07 UniRef50_A0M6C0 Protein containing AraC type HTH domain n=18 Tax... 58 3e-07 UniRef50_C0Z962 Probable two-component response regulator n=1 Ta... 58 3e-07 UniRef50_A4A3Z8 Transcriptional regulator (AraC family protein) ... 58 3e-07 UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=H... 58 3e-07 UniRef50_B9R5F4 Transcriptional regulator, AraC family protein n... 58 3e-07 UniRef50_Q1N423 Transcriptional regulator, AraC family protein n... 58 3e-07 UniRef50_D1N1E5 Transcriptional regulator, AraC family n=1 Tax=V... 58 3e-07 UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2... 58 3e-07 UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=S... 58 4e-07 UniRef50_Q7MFB7 AraC-type DNA-binding domain-containing protein ... 57 4e-07 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 57 4e-07 UniRef50_C6CT05 Two component transcriptional regulator, AraC fa... 57 4e-07 UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=D... 57 4e-07 UniRef50_UPI0001C3708E response regulator n=1 Tax=Ruminococcus f... 57 4e-07 UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein ... 57 5e-07 UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotro... 57 5e-07 UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillu... 57 5e-07 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 57 5e-07 UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_... 57 5e-07 UniRef50_Q5E3W4 Transcriptional regulator, AraC family n=1 Tax=V... 57 5e-07 UniRef50_D0BXH8 Transcriptional regulator n=1 Tax=Acinetobacter ... 57 5e-07 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 57 6e-07 UniRef50_A6B243 Transcriptional activator of virulence loci n=4 ... 57 6e-07 UniRef50_Q39M95 Two component transcriptional regulator, AraC fa... 57 6e-07 UniRef50_C0D0A3 Putative uncharacterized protein n=1 Tax=Clostri... 57 6e-07 UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type... 57 6e-07 UniRef50_C6LB63 Putative response regulator receiver domain prot... 57 6e-07 UniRef50_D0S2K9 AraC-type DNA-binding domain-containing protein ... 57 6e-07 UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=V... 57 7e-07 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 57 7e-07 UniRef50_A7JVV0 Possible AraC family transcriptional regulator n... 57 7e-07 UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photob... 57 7e-07 UniRef50_A9ETR6 AraC-type DNA-binding domain-containing protein ... 57 7e-07 UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 57 7e-07 UniRef50_C9PF84 Transcriptional regulator AraC family n=1 Tax=Vi... 57 8e-07 UniRef50_B9XJ53 Transcriptional regulator, AraC family n=1 Tax=b... 57 8e-07 UniRef50_B8KMA4 Putative uncharacterized protein n=1 Tax=gamma p... 57 8e-07 UniRef50_A8EX63 Transcriptional regulator, AraC family n=1 Tax=A... 57 8e-07 UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=m... 57 8e-07 UniRef50_A6KZ04 Two-component system sensor histidine kinase/res... 56 9e-07 UniRef50_C9XN35 AraC-family transcriptional regulator n=6 Tax=Cl... 56 9e-07 UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostri... 56 9e-07 UniRef50_UPI0001789612 two component transcriptional regulator, ... 56 9e-07 UniRef50_D0LMC0 Transcriptional regulator, AraC family n=1 Tax=H... 56 1e-06 UniRef50_Q8AB44 Sensor protein n=5 Tax=Bacteria RepID=Q8AB44_BACTN 56 1e-06 UniRef50_D1B2G1 Helix-turn-helix, AraC domain protein n=1 Tax=Su... 56 1e-06 UniRef50_B2IB01 Transcriptional regulator, AraC family n=4 Tax=P... 56 1e-06 UniRef50_Q2B9I5 Putative uncharacterized protein n=1 Tax=Bacillu... 56 1e-06 UniRef50_UPI0001BC838F helix-turn-helix- domain containing prote... 56 1e-06 UniRef50_Q5QL43 Two-component response regulator n=2 Tax=Geobaci... 56 1e-06 UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostri... 56 1e-06 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 56 1e-06 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 56 1e-06 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 56 1e-06 UniRef50_Q2RVL5 Transcriptional regulator, AraC family n=2 Tax=A... 56 1e-06 UniRef50_A1ZHS6 Transcriptional regulator, AraC family protein n... 56 1e-06 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 56 1e-06 UniRef50_A0P1V7 Helix-turn-helix, AraC type protein n=1 Tax=Labr... 55 1e-06 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 55 2e-06 UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=M... 55 2e-06 UniRef50_B3CBW2 Sensor protein n=1 Tax=Bacteroides intestinalis ... 55 2e-06 UniRef50_Q1N625 AraC-type DNA-binding domain-containing protein ... 55 2e-06 UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=... 55 2e-06 UniRef50_Q2RW15 Transcriptional regulator, AraC family n=1 Tax=R... 55 2e-06 UniRef50_C0EGI4 Putative uncharacterized protein n=1 Tax=Clostri... 55 2e-06 UniRef50_A6B487 Arabinose operon regulatory protein n=3 Tax=Vibr... 55 2e-06 UniRef50_D1QQ30 Sensor protein n=1 Tax=Prevotella oris F0302 Rep... 55 2e-06 UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_... 55 2e-06 UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitre... 55 2e-06 UniRef50_C5EIB6 Transcriptional regulator n=3 Tax=Clostridiales ... 55 2e-06 UniRef50_Q397M3 Transcriptional regulator, AraC family n=2 Tax=B... 55 2e-06 UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n... 55 2e-06 UniRef50_A6F8A8 Transcriptional regulator, AraC family n=1 Tax=M... 55 2e-06 UniRef50_D1AE55 Transcriptional regulator, AraC family n=1 Tax=T... 55 2e-06 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 55 2e-06 UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase... 55 2e-06 UniRef50_A4XFU2 Two component transcriptional regulator, AraC fa... 55 3e-06 UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firm... 55 3e-06 UniRef50_A6GXX7 Probable transcriptional regulator, AraC family ... 55 3e-06 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 55 3e-06 UniRef50_A6D9E4 AraC-type DNA-binding domain-containing protein ... 55 3e-06 UniRef50_B2TEU0 Transcriptional regulator, AraC family n=3 Tax=B... 55 3e-06 UniRef50_A9U7E9 Predicted protein n=1 Tax=Physcomitrella patens ... 55 3e-06 UniRef50_B4SJH0 Transcriptional regulator, AraC family n=4 Tax=X... 55 3e-06 UniRef50_C0A2N9 AraC-type DNA-binding domain-containing protein-... 55 3e-06 UniRef50_UPI00017895F4 transcriptional regulator, AraC family n=... 55 3e-06 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 55 3e-06 UniRef50_C0EDH7 Putative uncharacterized protein n=1 Tax=Clostri... 55 3e-06 UniRef50_Q0SR92 DNA-binding response regulator, AraC family n=10... 55 3e-06 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 55 3e-06 UniRef50_C4G4F0 Putative uncharacterized protein n=1 Tax=Abiotro... 55 3e-06 UniRef50_C2FW53 AraC family transcriptional regulator n=2 Tax=Sp... 55 3e-06 UniRef50_C6JC89 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_3... 54 3e-06 UniRef50_A9KL59 Two component transcriptional regulator, AraC fa... 54 3e-06 UniRef50_C0YPK7 AraC-type DNA-binding domain-containing protein ... 54 3e-06 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 54 4e-06 UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein ... 54 4e-06 UniRef50_A9DB22 Transcriptional regulator, AraC family protein n... 54 4e-06 UniRef50_Q64PI8 Transcriptional regulator n=1 Tax=Bacteroides fr... 54 4e-06 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 54 4e-06 UniRef50_D0IBR3 Signal transduction histidine kinase n=1 Tax=Gri... 54 4e-06 UniRef50_D1PCS5 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 54 4e-06 UniRef50_A9F3N3 Probable transcriptional regulator n=1 Tax=Phaeo... 54 4e-06 UniRef50_C9P3F6 Signal transduction histidine kinase n=2 Tax=Vib... 54 4e-06 UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like pr... 54 4e-06 UniRef50_UPI0001C365B5 response regulator receiver protein n=1 T... 54 4e-06 UniRef50_C6D143 Two component transcriptional regulator, AraC fa... 54 4e-06 UniRef50_Q8RSF6 Putative transcriptional regulator protein n=2 T... 54 4e-06 UniRef50_C9A684 Predicted protein n=1 Tax=Enterococcus casselifl... 54 4e-06 UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bactero... 54 5e-06 UniRef50_D1PKE0 Transcriptional regulator, AraC/XylS family n=1 ... 54 5e-06 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 54 5e-06 UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Pr... 54 5e-06 UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID... 54 5e-06 UniRef50_UPI0001788C36 two component transcriptional regulator, ... 54 5e-06 UniRef50_A3K7U5 Putative uncharacterized protein n=1 Tax=Sagittu... 54 5e-06 UniRef50_A6LXV6 Xylan 1,4-beta-xylosidase n=2 Tax=Clostridium Re... 54 5e-06 UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20... 54 5e-06 UniRef50_B3C9G8 Sensor protein n=2 Tax=Bacteroides RepID=B3C9G8_... 54 5e-06 UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein ... 54 6e-06 UniRef50_B8I997 Two component transcriptional regulator, AraC fa... 54 6e-06 UniRef50_B0MFL4 Putative uncharacterized protein n=1 Tax=Anaeros... 54 6e-06 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 54 6e-06 UniRef50_C9PH45 AraC-type DNA-binding domain-containing protein ... 54 6e-06 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF Sbjct: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF Sbjct: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV Sbjct: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 Query: 241 TDGINKTID 249 TDGINKTID Sbjct: 241 TDGINKTID 249 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 148/238 (62%), Gaps = 4/238 (1%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M +VCSVV +C+S D+ ++ ++ K+SL ++ +K+ +P S +R ++ID+ + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 FFIDVNN--ELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 + + + + GK T ++ + +PPL LV ++F+ A++ + L L S L+ Sbjct: 61 YLQHIRHPAQYSGKHT--RHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLS 118 Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT 178 +F + + + +INT + K+ IIS + R+W+L+D+AE +YTSESLIKK+L+DE T Sbjct: 119 LFSMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENT 178 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 SF++IL +RM AK L+ N + V+A+KCGY+STSYFI F+ YYGVTP Y + Sbjct: 179 SFSKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQYSHR 236 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 145/241 (60%), Gaps = 2/241 (0%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M +VCSV+ I +SFD+ ++ IS S+ ++ + + C R +DID+ T Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 FFIDVNNELPGKFTL-DKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + ++ +LP L K+ + + PP+ LV ++F+ + +S L L +S L+M Sbjct: 61 YLQNIR-QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTS 179 F ++ + + +I+T + K+ +ISF+I ++W+L+DIAE +YTSESLIKK+L+DE T Sbjct: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC 179 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 F++IL +RM A++L+ ++ +A+KCGY+STSYFI F+ YYGVTP + + G Sbjct: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 Query: 240 V 240 Sbjct: 240 T 240 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 131/238 (55%), Gaps = 5/238 (2%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M Y+CS++ + SF + I + I FKK + ++ ++ L IVD+++KT Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 FFIDVNNELPGKFTLDK--NGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 FF N F++ + Y+ E SL+ +L + ++ ++ ++ LA Sbjct: 61 FF---KNYTLSPFSVRRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLA 117 Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT 178 + + V SF+ ++N+ CK+ II +I W L DI+ +Y SESL+K++L+DEG Sbjct: 118 VLSSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGL 177 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 SF++++ + RM A++L+ +++++ VA CGY++ SYF+ F+ Y+GV P Y + Sbjct: 178 SFSKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSR 235 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 118/236 (50%), Gaps = 1/236 (0%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M CSV+ I +SFD+ + + ++ S +V R P ++ + D + +S Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEF-IS 62 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 ++ NN + Y+ SL+ L + E + + L+ F Sbjct: 63 RYLKANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAF 122 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + F+ + + K+ II ++ W LKDI+ +Y SESL+K++L++EG SF Sbjct: 123 SSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSF 182 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 ++I+ D RM+ A+ L+++ Y I+ VA+ CGY S SYF F+ Y+GV+PS Y ++ Sbjct: 183 SKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQR 238 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 112 bits (281), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 13/235 (5%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M VCSV+FI +F+ I + +F + +V + +R + + ++ T Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 FFIDVNNE-----LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCIS 115 + N + +P KF N P L+ + + + + E L S Sbjct: 61 YLQCTNIQTVTVPVPAKFLRASN-------VPTGLLNEMIAYLNSEERNHHNFSELLLFS 113 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 L++F + + + + + + K+ I++ + W LKDI + +Y SESL+KK+L+ Sbjct: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQ 173 Query: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 E T+F++IL D RM++AK LI S+N +A++CGY STSYFI AF+ ++G +P Sbjct: 174 EQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 126/237 (53%), Gaps = 6/237 (2%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M VCSV+ +C ++ + + +S K S+ + + IR + K++I DI+ + +S Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINH-SIVS 59 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIA-DSHSLWLKERLCISLLAM 119 ++++ ++L D Y++ E +L +L + + D+ ++L ++ L++ Sbjct: 60 QYLEIQHKLTRTHLTDVPLYLSLEPNNPALAEALITSQRFSGDTTDMFLM----MACLSL 115 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTS 179 F+ E + F+ +++ + K+ II +I W L IA ++ SESL+K +L++EG Sbjct: 116 FESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHM 175 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 F+ +L + RMR A ++ S VA+KCGY+S SYFI F YYG P Y + Sbjct: 176 FSRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYVSR 232 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 90 LVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNI 149 L+ S+ + I + K+ + SLL++F ++ +F+ + + TF+ K+ I ++ Sbjct: 95 LLISMIDNINSQNHIHPDFKDAIFFSLLSVFSDVANLRAFLTSGMPTFSGKVRSIFLSDV 154 Query: 150 ERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 + W L+D+A+ +Y SESLIKK+L E TSF++IL DTRM A KL+ N + I V++ Sbjct: 155 SKHWKLRDLADYLYMSESLIKKKLLLENTSFSKILLDTRMSLAIKLLKQN-HPIKYVSEM 213 Query: 210 CGYNSTSYFICAFKDYYGVTPSHYFE 235 CG++STSYF+C F+ YY TP Y + Sbjct: 214 CGFSSTSYFVCLFRQYYECTPRKYLK 239 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRREL----PVCPSKLRIVD-IDKKTC 58 VC V+ + + F+ I + + F+KN + +++D I + P ++LRI + I +K Sbjct: 3 VCYVILVNRPFETEIAGKKLFFQKNDV-LLTDNISQSFFLRHPGNVTELRIDECIVRK-- 59 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 +++ + + + +I ++L+ ++ + + + + E++ + L+ Sbjct: 60 ---YMESADRIQHSDSAVSVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFACLS 116 Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT 178 +F + IN+ K+ II + R W +KDI+ +Y SESL+K++L++E Sbjct: 117 IFSTHRGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKV 176 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 SF++IL D RM A++LI+S S+N +A +CGY ST YFI F++Y+G+TP Sbjct: 177 SFSQILLDIRMHNARQLISSK-LSVNQIAIRCGYASTPYFISVFREYFGITP 227 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 14/163 (8%) Query: 86 PPLSLVFSLFEGIKIADSHSLWL------KER---LCISLLAMF---KKRESVNSFILTN 133 P L+L + ++A HS+ KER L ++L+ F KK S+ ++L N Sbjct: 86 PILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRN 145 Query: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAK 193 + + II +I + W+L +A + S SL+KK+L+ E TS+++I+ RMRYA Sbjct: 146 --CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + + +I+ V+Q CGYNSTSYFI FKD+YG+TP HY + Sbjct: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 7/132 (5%) Query: 109 KERLCISLLAMFKKRESVNSFILT----NINTFTCKITGIISFNIERQWHLKDIAELIYT 164 K L +LL++F + +L N+ T C + I+ NI +W L IA + Sbjct: 114 KRALIFALLSVFLEDTQFIPLLLNVLQPNMRTRVCTV---INNNIAHEWTLARIASELLM 170 Query: 165 SESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 S SL+KK+LR+EGTS++++L + RM+ A +LI SI VA CGY+S SYFI F++ Sbjct: 171 SPSLLKKKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRN 230 Query: 225 YYGVTPSHYFEK 236 YYG+TP+ Y E+ Sbjct: 231 YYGMTPTEYQER 242 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/98 (45%), Positives = 65/98 (66%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 T ++ IIS + RQW L D+A+ I+ S S +K++L +EGTSF++I RM A KL Sbjct: 206 TLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKL 265 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + ++++N VA KCGY+STSYFI FK Y+ TPS + Sbjct: 266 LRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTF 303 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 1/155 (0%) Query: 81 IAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF-KKRESVNSFILTNINTFTC 139 +A E ++ VF+L + S KE L LL+ F + E+ F + NT Sbjct: 125 LAPIETGVARVFNLLHSSNKSQKLSQDKKEYLIRFLLSEFIYEPEAFALFRELSQNTLAE 184 Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199 I II +I R+W LKDI++ +Y S S +K++L+ E TSF+E+ + RM A KL+ ++ Sbjct: 185 NIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKLLRNS 244 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 Y+I VA CGY+S SYF C FK ++ TPS + Sbjct: 245 EYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEFL 279 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 4/133 (3%) Query: 109 KERLCISLLAMFKKRESVNSFI----LTNINTFTCKITGIISFNIERQWHLKDIAELIYT 164 + RL + + K + S + ++ TFT K+ II ++ R W L D+A +++ Sbjct: 140 QHRLVYKITYLLSKVNDIESLVYSLSVSTDTTFTEKLKVIIEADLSRSWRLVDLANILHM 199 Query: 165 SESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 SE I+K+L E +F ++ D RM +A KLIT++ IN +A + GY STSYFI FK+ Sbjct: 200 SEVSIRKKLEKESNNFNALVLDIRMYHAAKLITTSDKHINSIANEVGYTSTSYFIRNFKE 259 Query: 225 YYGVTPSHYFEKI 237 ++G+TP + K+ Sbjct: 260 FFGITPKQFSLKV 272 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 67/99 (67%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 ++ + +I +IS ++ + W LK+IA+L+Y SES +K++L EGT+FT++L+ R+ A+K Sbjct: 131 SSLSSRIRALISKDLTKPWTLKEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTAQK 190 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++ ++ S++ +A+ CG+ SYF F+ YG TP Y Sbjct: 191 MVCNSDASVSAIAELCGFKHASYFGACFRKEYGATPLAY 229 >UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=Escherichia coli E24377A RepID=A7ZGX7_ECO24 Length = 209 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 67/114 (58%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILR 185 + S +++I FT K+ G+I ++ R+W L IA++ SE I+KRL E T+F +IL Sbjct: 95 IESLYMSSITFFTDKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILM 154 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 +RM A L+ NSY I+ ++ G +S SYFI F ++GVTP +F G Sbjct: 155 QSRMSKAALLLLENSYQISQISNMIGISSASYFIRIFNKHFGVTPKQFFNYFKG 208 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 78/129 (60%), Gaps = 1/129 (0%) Query: 109 KERLCISLLAMFKKRESVNSFILTNINT-FTCKITGIISFNIERQWHLKDIAELIYTSES 167 K L ++L+++F ++ ++ ++ T ++ +I+ NI W L IA + S S Sbjct: 130 KRSLMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPS 189 Query: 168 LIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 L+KK+L+ E T+++++L + RM+ A KL+ + Y++ A CGY S SYFI F+ ++G Sbjct: 190 LLKKKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFG 249 Query: 228 VTPSHYFEK 236 +TP+ Y +K Sbjct: 250 ITPTEYQDK 258 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 68/96 (70%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNS 200 + II +I+ W+L+ +A + S SL+KK+L++E TS+++I+ + RMRYA +++ ++ Sbjct: 151 VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDN 210 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 +I VAQ CGY+STSYFI FK +YG+TP +Y K Sbjct: 211 KNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK 246 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 3/109 (2%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 TF+ +I ++ ++ R+W L DIAE ++ SE ++KRL E +F +++ D RM A K Sbjct: 151 TFSERIVTLLFSDLTRKWKLSDIAEEMHISEISVRKRLEQECLNFNQLILDVRMNQAAKF 210 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGI 244 I + + I ++A GY S SYFI FK+YYGVTP FE IG+ + + Sbjct: 211 IIRSDHQIGMIASLVGYTSVSYFIKTFKEYYGVTPKK-FE--IGIKENL 256 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Query: 101 ADSHSLWLKERLCISLLAMFKKR-ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIA 159 A +L +K+ L L+A++++ + +N F IT +I+ +++WHL D+A Sbjct: 132 ASQEALLMKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVA 191 Query: 160 ELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFI 219 + ++T+ S +++ L EG SF ++L D RM A +T ++YS+ ++ +CG+ S +YF Sbjct: 192 KALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFC 251 Query: 220 CAFKDYYGVTPSHY 233 FK Y +TPS + Sbjct: 252 DVFKRKYNMTPSQF 265 >UniRef50_P0A2T2 Virulence regulon transcriptional activator virF n=9 Tax=Enterobacteriaceae RepID=VIRF_SHIDY Length = 262 Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 63/99 (63%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 +F+ +I I+ NIE++W L DI+ + SE ++KRL E +F +IL D RM +A KL Sbjct: 158 SFSDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKL 217 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 + ++ IN V++ G +S SYFI F +YYG+TP ++ Sbjct: 218 LLNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFY 256 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 60/98 (61%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199 K+ ++ ++QW L D++ I+ S S +K++L EGT+F+E+ RM A KL+ + Sbjct: 199 KVYNLLYTEPDKQWKLDDVSSAIFMSASTLKRKLATEGTTFSELYITARMNLASKLLRTG 258 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 YS+ VA CGY+S SYFI FK + +TPS + + + Sbjct: 259 KYSVTNVAVLCGYDSVSYFIACFKRQFNITPSAFMKSV 296 >UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio parahaemolyticus RepID=A6B6J4_VIBPA Length = 241 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 70/107 (65%) Query: 127 NSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRD 186 N+ +L N + KI ++S +++++W L+++ +L YTS+S + ++L+D TS +I+ + Sbjct: 121 NNRVLYNYDPLEKKIYRLVSKDLKKKWSLEEVCKLTYTSKSTLNRKLKDNQTSMGQIISN 180 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 R+ YA LIT+ S S++ ++ G+NSTSYF FK+ +G +P Y Sbjct: 181 ARLDYATILITNTSLSVDEISMLSGFNSTSYFCKKFKESHGFSPKQY 227 >UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax=Escherichia RepID=CSVR_ECOLX Length = 301 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 65/109 (59%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILR 185 + S +++I FT K+ G+I ++ R+W L IA++ SE I+KRL E T+F +IL Sbjct: 153 IESLYMSSITFFTDKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILM 212 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 +RM A L+ NSY I+ ++ G +S SYFI F ++GVT S + Sbjct: 213 QSRMSKAALLLLENSYQISQISNMIGISSASYFIRIFNKHFGVTRSSFL 261 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 62/93 (66%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNS 200 I +I+ + +R+W + D+A+ ++T++S +++ L EG SF+++L D RM A +T ++ Sbjct: 202 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 261 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 YSI+ + + G+ S +YF AFK YG+TPS + Sbjct: 262 YSISQIGHRSGFGSAAYFCDAFKRKYGITPSQF 294 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 63/93 (67%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNS 200 I +I+ + +R+W + D+A+ ++T++S +++ L EG SF+++L D RM A +T ++ Sbjct: 172 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 231 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 YSI+ ++ + G+ S +YF AFK YG+TPS + Sbjct: 232 YSISQISNRSGFGSAAYFCDAFKRKYGITPSQF 264 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 106/225 (47%), Gaps = 20/225 (8%) Query: 26 KKNSLFIVSDKIR-----RELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGY 80 K+ S IV + R ++L V P+ + + I++ F D+ + P T K Y Sbjct: 38 KRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCSDLLSLTPELLTRFKTRY 97 Query: 81 IAEEEP--------PLS--LVF---SLFEGIKIADSHSLWLKERLCISLLAMFKKRESVN 127 ++E P P++ L F S+ + ++ + S+ L++ + LL + Sbjct: 98 LSEPPPGRLTSLCAPVTTELAFMWQSVLQAVR--EGLSVALQQHQTMGLLLALYEAGYAG 155 Query: 128 SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDT 187 ++ + ++ +I + + W + +A++++ ES +++RL+ E SF +I+ + Sbjct: 156 PLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEV 215 Query: 188 RMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 RM +A + + S I +AQ GY S S F F+ +YG+ P H Sbjct: 216 RMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLPKH 260 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 56/95 (58%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 TFT KI I N ++W L IA+ SE ++KRL EGTSF+ + RM + +L Sbjct: 168 TFTEKIRNQIENNPSKRWCLNMIADEFNISEISVRKRLESEGTSFSNLFLKVRMEKSMQL 227 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + N I +++ G+ STSYFI FKDY+G+TP Sbjct: 228 LLQNELQICQISKSVGFRSTSYFIKIFKDYFGITP 262 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 59/97 (60%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 TF ++ +I NI ++W L+ ++E SE I+K+L EG F E++ + RM+ A L Sbjct: 187 TFCNRVIELIESNIAKKWTLRLLSEEFSISEIAIRKKLEAEGVIFRELILEIRMKKAMTL 246 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + + S++ +A K GYN+ SYFI F+ ++G+TP Sbjct: 247 LIAGELSVSKIADKVGYNNISYFISHFRQFFGMTPKQ 283 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%) Query: 151 RQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN-SYSINVVAQK 209 +W L +A+ +Y SES +K++L+ E +FTE+ RM +AKKL+ SN I VA+ Sbjct: 179 ERWSLSMMAKELYMSESTLKRKLKSEDQTFTELYNFARMSHAKKLLLSNRDIKIATVAEM 238 Query: 210 CGYNSTSYFICAFKDYYGVTPSHY 233 CG+N SYF+ FK Y+G++P Y Sbjct: 239 CGFNHVSYFVSCFKKYFGLSPLVY 262 >UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11 Tax=Salmonella enterica subsp. enterica RepID=B5R1L9_SALEP Length = 271 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 59/101 (58%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 +F+ + I +I +W LK ++E + SE I+K+L +E T+F IL D RM+ A +L Sbjct: 155 SFSDIVRKTIDNDISTKWRLKTLSEKLNLSEVTIRKKLENENTNFYRILLDARMQKAARL 214 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + + IN V+ G +S SYFI F DYYG+TP + K Sbjct: 215 VLDSDTHINKVSYAVGMSSVSYFIKLFSDYYGLTPKQFHLK 255 >UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Burkholderia multivorans RepID=A9ACW6_BURM1 Length = 339 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 10/139 (7%) Query: 101 ADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAE 160 A++ + + ER+C LL+ + R + SF+ N + + + ER LKDIA Sbjct: 210 ANAATAAMCERMCAELLSRRRTRVDIVSFL----NEY------LATHAFERPPQLKDIAA 259 Query: 161 LIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 L+ TSE +K+RL++EG F +I R A+ L+ SI +AQ+ G++ S F Sbjct: 260 LLNTSERTLKRRLQEEGACFRDISNAVRKARAQALVAEGRLSIKEIAQELGFSDMSSFSQ 319 Query: 221 AFKDYYGVTPSHYFEKIIG 239 A+K + GV PS ++ G Sbjct: 320 AYKRWTGVAPSMSRQRAGG 338 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 85 EPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILT-NINTFTCKITG 143 E L++V ++ IK + ++ K + LL+ F + + IL+ + + ++ Sbjct: 116 EMQLNIVSNIITDIKYSGNNKKIFK---ILYLLSFFNDYNDIVNVILSASSKSIVDRVIK 172 Query: 144 IISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSI 203 +I +I + W L D++ ++ S+S ++K+L E +F +I+ D +M++A + + +I Sbjct: 173 VIELDISKNWKLGDVSSSMFMSDSCLRKQLNKENLTFKKIMLDIKMKHASLFLRTTDKNI 232 Query: 204 NVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 + ++ G+NSTSYFI FK+YY TP Y + +T G Sbjct: 233 DEISCLVGFNSTSYFIKVFKEYYNTTPKKY-NGVYSITQG 271 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 56/94 (59%) Query: 138 TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLIT 197 + ++ +IS ER W + L+ SE+ +++RL E T F +L +TRM++A L+ Sbjct: 192 STQLRALISEEPERHWTAQSAGRLLAMSEATLRRRLSAEQTRFEVLLLETRMQHAMMLVQ 251 Query: 198 SNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + S+S+ +A+ CGY S++ F FK +G +P+ Sbjct: 252 TTSWSMQRLAEACGYKSSARFSERFKTRFGCSPT 285 >UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. 383 RepID=Q39HU5_BURS3 Length = 345 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 78 NGYIAEEEPPLSLVFS---LFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI 134 I +P +L F L + A++ + + ER+C L+ + R + SF+ Sbjct: 190 GAMIRHGQPASTLTFEHAHLERPLPQANAATAAMCERMCAELITRRRTRVDLVSFL---- 245 Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 N + + + +R LKDIA L+ TSE +K+RL++EG F +I R A+ Sbjct: 246 NEY------LATRPFDRPPQLKDIATLLNTSERTLKRRLQEEGACFRDISSAVRKTRAQA 299 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 LI SI +AQ+ G++ S F A+K + GV PS ++ G Sbjct: 300 LIAEGRLSIKEIAQELGFSDMSSFSQAYKRWTGVAPSVSRQETAG 344 >UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MJE3_VIBVY Length = 243 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 66/112 (58%) Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFT 181 K+ S N N + I II+ +I+++W+ K+I L++ S S + + L++EG + Sbjct: 124 KKHSTNKTPKKNRKEYNKNIVEIINSDIKKKWNYKEICSLLFVSHSTLYRTLKNEGKTLK 183 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 I+ R+ ++KL+ + + SIN ++ +CG+NS SYF FKD ++P+ Y Sbjct: 184 MIVLHIRIINSQKLLVNTNMSINEISNRCGFNSPSYFSRKFKDSVKMSPTEY 235 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 54/103 (52%) Query: 129 FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTR 188 F L +++ ++ + E W + E + SES +++RLR+EG SF ++L D R Sbjct: 189 FALPRRQGVLPRLSHLLRASPETDWTARSAGEALAMSESTLRRRLREEGGSFEKLLVDIR 248 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 M + LI + +++ VA CGY S S F F +G+ PS Sbjct: 249 MHHGLMLIQTTRWNMAQVADACGYKSVSRFAERFTQRFGLPPS 291 >UniRef50_A3J4H6 Two-component system sensor histidine kinase/response regulator, hybrid ('one component system') n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J4H6_9FLAO Length = 254 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 2/107 (1%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAK 193 N F KI I+ NI+ ++ +A I+ S+S I K++R + + + +R+ R+ YA Sbjct: 147 NDFFDKIDDIVIRNIKTDVTIEKLASEIFVSKSTIDKKIRKFKQVNVSTYIREIRLNYAI 206 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF-EKIIG 239 KLI S +++ +A +CG+NSTSYF FK+Y G++P Y +KI G Sbjct: 207 KLIESGEVNVDTLAIECGFNSTSYFSVCFKNYSGLSPKKYINQKIQG 253 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 59/99 (59%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 + T + ++ +E + +KD+AE ++ +E ++++L EG +F +L R R+AKK Sbjct: 233 HPLTALVRELLFDEVEGFFKMKDVAEKLHLTERTLQRQLAKEGVTFQILLDQVRERHAKK 292 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 L+ + YSI+ +++K GY+ ++F AFK + TP Y Sbjct: 293 LLNHHEYSISYISEKLGYSEVTHFTRAFKRWTNQTPKQY 331 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 10/129 (7%) Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 E++C+ L+ + R + + + G + F+++ DIA L+ TS + Sbjct: 246 EQMCVQLVEARRARVGTSEMV----RQYLTATPGNVPFSLD------DIARLMNTSPRTL 295 Query: 170 KKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 K+RL++EGT+F +L R A+ L+ S+ VA++ G++ S F AFK +YGV Sbjct: 296 KRRLQEEGTTFRTLLAQARGAMAETLLGDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVP 355 Query: 230 PSHYFEKII 238 P Y ++ Sbjct: 356 PGTYRSGLL 364 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 6/91 (6%) Query: 153 WHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 W L A SE+ +++RL E T F+EIL DTRM A LI + + + VA + GY Sbjct: 180 WTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGY 239 Query: 213 NSTSYFICAFKDYYGVTPSH------YFEKI 237 +S S F FK+ +GV+P H +FE+I Sbjct: 240 DSPSQFSARFKERFGVSPRHVRSGSEHFERI 270 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 56/91 (61%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199 K+ II ++ R+W ++A ++ S S +K++L E SF++I D RM A KL+ Sbjct: 196 KVYNIIISDLTRKWSQAEVAGKLFMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMG 255 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + +I+ VA CGY++ SYFI FK ++ +TP Sbjct: 256 AGNISQVATMCGYDTPSYFIAIFKRHFKITP 286 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 4/177 (2%) Query: 71 GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF-KKRESVNSF 129 G F D+ + P + + L + + +H+L ++ RL +L + + RE ++ Sbjct: 142 GGFEADRPHLLRSAMPSIQALIHLVNTLLLPGAHALLIEHRLEDLILTLLLQHREQLDEA 201 Query: 130 ILTNINTF---TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRD 186 + T + ++ + R W ++A + S++ +++RL +G SF +L Sbjct: 202 RAASSTLALDPTLAVRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLWK 261 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 R+ AK L+ S + + VA CGY+S S F F+ GV+PS Y + +G Sbjct: 262 ERLDLAKGLLRSGRHGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARHRASANG 318 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 54/92 (58%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199 K+ +I +++W +DIAE + SE+ ++++L EG +F+EIL D RM A L+ S Sbjct: 174 KVRLLIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNAFSEILVDVRMSLALSLLQST 233 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 +I +A + GY S S F FK +G +P+ Sbjct: 234 DAAIASIAYQVGYESASRFSVRFKQRFGFSPT 265 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 69/125 (55%) Query: 114 ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + L +R ++ ++ +F+ K++ +S + L+ +AE S + + ++L Sbjct: 134 MGLYQQLAERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAERFAMSRATLIRKL 193 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + EGT + E+L + R+ +A L+ + SY++ ++AQ CGY S F FK +G+TPS Y Sbjct: 194 KQEGTQYREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRFSQRFKGKFGLTPSEY 253 Query: 234 FEKII 238 + ++ Sbjct: 254 IKTVV 258 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 114 ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + LLA + +V F + + +I +I+ ++ W + D+A+ + SE+ +++RL Sbjct: 143 MELLAWLAQAGAV--FNPHSAQRLSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRL 200 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 +EG SF E+L + +M A L+ ++ + VA GY S + F F+ ++G TPS Sbjct: 201 ANEGASFRELLGNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTPS 258 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 13/103 (12%) Query: 142 TGIISFNIERQWHLKD-----------IAELIYTSESLIKKRLRDEGTSFTEILRDTRMR 190 TG I+ + +W L D IA+ ++ S +++RL+ E TS+ E+++ TRM+ Sbjct: 229 TGDIAGKV--RWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEVVQQTRMQ 286 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 A++L+ S S V CG++ S F AFK + G TPS Y Sbjct: 287 LAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDY 329 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 55/104 (52%) Query: 129 FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTR 188 F+L +++ ++ ++ W K + + SES +++RLR EG F ++L D R Sbjct: 180 FLLPQQQGIFPRLSKLLREAPDKGWTAKVAGDALAMSESTLRRRLRQEGVRFEQLLLDIR 239 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 M +A LI + +++ VA CGY S S F F+ +G +P+ Sbjct: 240 MHHALMLIQTTHWNLAQVADACGYKSVSRFTERFRYRFGNSPAQ 283 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 52/96 (54%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 + + K+ IIS ++ W + I + + SES I+++L EGTS + R+ + Sbjct: 166 SLSAKVHAIISTDLTYDWTMDVITQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFGLHQ 225 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + S IN +A++CGY S S F FK +GVTP+ Sbjct: 226 VQSTFQPINHIAEQCGYLSQSRFTNKFKQLFGVTPT 261 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 54/97 (55%) Query: 137 FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLI 196 F C++ +I + L +A +Y SE +K+RL++E SF ++ R+ A+ L+ Sbjct: 240 FACRVRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLL 299 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 S + +++ +A GY + F AFK + G++PSH+ Sbjct: 300 ASTTMNLSQIADSLGYADAANFTRAFKRWTGLSPSHF 336 >UniRef50_C6VTG9 Transcriptional regulator, AraC family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTG9_DYAFD Length = 338 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%) Query: 105 SLWLKERLCISLLAMFKKRESVN-SFILTNINTFTCK----ITGIISFNIERQWHLKDIA 159 SL++K + LL ++ E + IL+++N+ + + I+ N+ +QW LK++A Sbjct: 197 SLFVKAKTVELLLLQMEQHEHLPLPSILSSLNSAHAEQMQLVKNILDENLGQQWSLKELA 256 Query: 160 ELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 + T+E +KK ++ G + L RM AK + S+N +AQ+ GY ++F Sbjct: 257 RRVGTNEFNLKKYFKEVFGETVFGYLHQKRMETAKDELCQPGSSVNDIAQRMGYKHPTHF 316 Query: 219 ICAFKDYYGVTPS 231 AFK Y+G+ PS Sbjct: 317 TAAFKKYHGILPS 329 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 46/79 (58%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L IAE + SE +K+ L+ +GT+F +I+ D R AKK++ YSI +A GY Sbjct: 267 LPMIAERLNMSERTLKRHLQAQGTTFLQIVADVRFTEAKKMLQHKQYSIQDIASIVGYEE 326 Query: 215 TSYFICAFKDYYGVTPSHY 233 + FI AFK +G TPS Y Sbjct: 327 ATNFIRAFKKTFGETPSQY 345 >UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-processing enzyme n=1 Tax=Vibrio mimicus VM573 RepID=D2YK24_VIBMI Length = 533 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 59/124 (47%) Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 K + NS +T+ KI+ ++ +I R W DI + T+ ++KK L G F Sbjct: 154 KVEKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKF 213 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 E++ R+ Y+ L+ + + I +A + G+ S SYF FK V PS Y + GV Sbjct: 214 RELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLLMLTGV 273 Query: 241 TDGI 244 I Sbjct: 274 AXKI 277 >UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=Vibrio cholerae RepID=TCPN_VIBC3 Length = 276 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%) Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 K + NS +T+ KI+ ++ +I R W DI + T+ ++KK L G F Sbjct: 154 KVEKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKF 213 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 E++ R+ Y+ L+ + + I +A + G+ S SYF FK V PS Y + GV Sbjct: 214 RELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV 273 Query: 241 TD 242 + Sbjct: 274 AE 275 >UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enterica RepID=Q04819_SALTY Length = 259 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 112 LCISLLAMFKKRESVNSFILTNI-NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L +L++ F +++ F+ T + + ++ +I+ N+ W + +A +Y S SL+K Sbjct: 117 LTFALVSAFCEQDIFFPFLKTCLKQSMADQVATVINRNVSENWTIHRVAGELYVSVSLLK 176 Query: 171 KRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 K+L++E TS+T IL + RM+ A +LI ++ VA +CGY+S F Sbjct: 177 KKLKEENTSYTRILLECRMKKASELIVMQEGAVKKVAYQCGYSSVPVF 224 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 8/126 (6%) Query: 108 LKERLCISLLAMFKKRESVNSFILTN--INTFTCKITGIISFNIERQWHLKDIAELIYTS 165 L E L ++L + S ++ +L N + T +I ++ + W DIA+ ++ + Sbjct: 139 LAESLLLAL------QPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATDIAQRLHMA 192 Query: 166 ESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 ES +++RL EG F +IL D R+ A + S + I +A + GY S S F F Sbjct: 193 ESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYASPSRFTARFVRR 252 Query: 226 YGVTPS 231 YG+TPS Sbjct: 253 YGLTPS 258 >UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein n=10 Tax=Acinetobacter RepID=B2HXY7_ACIBC Length = 344 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 50/79 (63%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 +K +A+++ SE +++ L E TSF+ ++ TR +YA+ L+ ++S SI VA GY Sbjct: 253 VKQVAQMMNMSERSLQRYLAIENTSFSALVDLTRKQYAQDLLQNSSMSIEAVALSLGYAD 312 Query: 215 TSYFICAFKDYYGVTPSHY 233 T +F AFK + GVTP +Y Sbjct: 313 TPHFTRAFKRWMGVTPKYY 331 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 16/115 (13%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKD-------IAELIYTSESLIKKRLRDEGT 178 ++SF++ +I+ G++ +E HL D IA+ ++ S ++++L+DEGT Sbjct: 75 LDSFVVQSISR------GVVDKIVE---HLPDGPPNQQQIAQALHVSNRTLQRKLKDEGT 125 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 SF ++L+DTR++ A+K ++ + S+ A G++ S F AFK + GV P+ + Sbjct: 126 SFMDLLQDTRLQLARKYLSHPNRSVVETAYMLGFSEPSTFSRAFKRWTGVAPADF 180 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 109 KERLCISLLAMF--KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 +E L ++L+A+ K+ E +N I + T KI I NIE + L+ +A+ + S Sbjct: 139 QEHLALALMALMVEKQPELLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMST 198 Query: 167 SLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + +K+RL E SF+++L+ R+ +A + SI +A + G+ S ++F AFK Sbjct: 199 ATLKRRLAAEEMSFSQLLKIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQ 258 Query: 227 GVTPSHYFEKI 237 +TP + K+ Sbjct: 259 QMTPKEFRAKV 269 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 34/223 (15%) Query: 15 DLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC--LSFFIDVNNELPGK 72 D I+ R ++ +L +V REL P +R V++ + T ++ F++ ++P Sbjct: 164 DFIVQRDML----GALVVV-----RELLGSPLPIRSVELRQATPSDMTPFVEAFGQVP-H 213 Query: 73 FTLDKN--GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFI 130 F N G+ A+ L + + A+S + ER C LLA R + + Sbjct: 214 FGAQHNRLGFSAD---------LLDDPLPRANSQLVSACERQCQMLLA----RHQWHQGV 260 Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMR 190 + + G ++ ++ +A ++ S +++RL +EG+SF + + R Sbjct: 261 AGRVRQLLLQTPGQMA-------DMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREA 313 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 A +L+ + S+ +A++ GY S FI AFK + G TP Y Sbjct: 314 LADELLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRY 356 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 5/107 (4%) Query: 135 NTFTCKITGIISFNIERQWHLKD---IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRY 191 NT+T KI ++ ++ +Q + D IA I S +++RL++E TSF EI + R Sbjct: 288 NTYTSKIRALVGRDLSQQ--MPDFEFIASQINVSPQTLRRRLKEENTSFQEIKDNMRRDA 345 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 A ++ SIN +A K G+ S F AFK + GVTP Y E ++ Sbjct: 346 AIYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDYRESVL 392 >UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BG36_9RHOB Length = 349 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 IA + S +++RL DEG F+ +L RM AK+++ + ++ ++++ GY+ S Sbjct: 255 IAAALGMSRRTLRRRLEDEGQKFSRLLAGCRMEIAKRMLLAPGAQLHDISERLGYSEVSA 314 Query: 218 FICAFKDYYGVTPSHYFEKIIGVTDG 243 F AF+ G TPS + ++ G+ DG Sbjct: 315 FERAFRQREGATPSQFRKQCCGIGDG 340 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 21/169 (12%) Query: 69 LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNS 128 L F + + +E P L L LFE + WLK S Sbjct: 119 LKAHFDVVRQALENDEAPELVLKLKLFELLA-------WLKAEHL--------------S 157 Query: 129 FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTR 188 F+ + +I +I+ N +W + IA ++ SE+ +++ L+ T+F E+L D R Sbjct: 158 FVPHEKHNLLRQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREVLTDVR 217 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 M A L+ + + +A + GY+S S F FK +G PS E + Sbjct: 218 MSRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFGFLPSDIRENL 266 >UniRef50_D1SRG9 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SRG9_9BURK Length = 343 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%) Query: 101 ADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAE 160 AD + + ER+C L M ++R + + + S L IA Sbjct: 214 ADPATAAMCERMCQKL--MEQRRVDIGCAAMVRHQLAALPPGALPS--------LHHIAG 263 Query: 161 LIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 L++TSE +K+RL+ EGTSF +++ ++ A L+ + S+ VA++ GY S F Sbjct: 264 LLHTSERTLKRRLQGEGTSFRQLVAQSQAASAAALVGEHRLSLTEVAERMGYADLSAFSQ 323 Query: 221 AFKDYYGVTPSHY 233 AFK ++GV+P + Sbjct: 324 AFKRWHGVSPEGF 336 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L I+EL++ S +K+RL++EGT+F ++L D R R A L+ + +++ +A++ G++ Sbjct: 297 LSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAINLL-KDGHNLTEIAERLGFSD 355 Query: 215 TSYFICAFKDYYGVTPSHYFEK 236 S F AFK ++G++PS + ++ Sbjct: 356 LSSFSQAFKRWHGISPSQFSQQ 377 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 49/93 (52%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199 K++ ++ + W L +I+ L+ SES +++RL+ E F ++L R+ L + Sbjct: 169 KVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFRDLLESVRLGIGLHLAQTT 228 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 I +A +CGY S S F FK +G+TPS Sbjct: 229 LLPIAHIADQCGYQSQSRFTERFKQRFGMTPSE 261 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 54/93 (58%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNS 200 + I+ ++ +W LK +A+ + SE ++++L+DEG +F ++L + R+R A+ + ++ Sbjct: 223 VEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTAESYLLNSQ 282 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 S+ + G++ S+F FK Y G PS Y Sbjct: 283 LSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQY 315 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 59/97 (60%) Query: 137 FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLI 196 ++ I+S + + ++++AE ++ S+ +K++L EGTSF+ ++ + R R+A L+ Sbjct: 239 LAMRVRDILSNSEQHYLSIENVAEYLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLL 298 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + YS+ +A + GY+ + F AFK + G +PS++ Sbjct: 299 SRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNW 335 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 51/81 (62%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L IA + +E +++RL DEGTS+ ++L + R A++L++S S++ V+ + GY+S Sbjct: 251 LAQIATDHFMTERTLRRRLTDEGTSYRDLLAEVRQTMAEELLSSTGLSVSEVSARLGYSS 310 Query: 215 TSYFICAFKDYYGVTPSHYFE 235 S FI AF+ ++ +P + + Sbjct: 311 PSAFIHAFQKWHNCSPRQFLD 331 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 135 NTFTCKITGIISFNIERQW-HLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAK 193 ++ +I +I ++IE + +AE + S +++RL++EGTS+ E+ R A Sbjct: 227 ESYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIAL 286 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + YSI+ +AQK G+ S F AFK + G+TPS Y Sbjct: 287 HFLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDY 326 >UniRef50_A3ZVD0 Xylose operon regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZVD0_9PLAN Length = 416 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 20/170 (11%) Query: 69 LPGKFTLDKN----GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRE 124 +PG ++ +N GY+A + LV L EG + L +L + R Sbjct: 259 MPGLSSVAQNSERIGYLAAQ-----LVDQLIEGAERPAKPILVPPGQLIV--------RR 305 Query: 125 SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEI 183 S L + N I R + D+ + ++ S +++KR + G S Sbjct: 306 SSQFLALGDANVVAA--VEFIRDRCHRPITVTDVVDHLHLSRKVLEKRFKTAIGHSIAHE 363 Query: 184 LRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 +R +RMR A+ L+TS SI VA + G++STS FI AF+++ GVTP++Y Sbjct: 364 IRLSRMRNAQHLLTSTPLSIVDVAVRSGFDSTSGFIRAFREHTGVTPANY 413 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 54/98 (55%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 ++T K+T S + + + ++ + + S++ + +RL DE T F E+L RM +A L Sbjct: 160 SWTEKLTQFFSQDPSQNYTIEQVCQQFGLSKATLMRRLNDESTQFREVLAQVRMGHALSL 219 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + S ++ +AQ+CGY S F F+ +G++P Y Sbjct: 220 LQEKSQTVLELAQQCGYQSEVRFTQRFQKQFGLSPKQY 257 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 58/121 (47%) Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 RL ++ L + R+ + +L + +I I+ R W +D+ E S + ++ Sbjct: 152 RLALASLVLTLCRQGHGNLLLPQAPSLGEQIRDRIAAEPARDWQSRDVEEQFALSGATLR 211 Query: 171 KRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 +RL E TS ++L + R+ + L+ + + VA + GY S + F F + YG+ P Sbjct: 212 RRLAAERTSLRQLLTEARLAHGMTLLYTTDLPLKTVAARAGYRSAASFSKRFAEQYGLAP 271 Query: 231 S 231 + Sbjct: 272 T 272 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 LLA++ ++ ++ + + ++ ++ + R W + D+A ++ +S ++++L Sbjct: 146 LLALYLAGQA-GVLLIDRRDKWAEQVQQVLLLDPARNWSVSDVARSLHIGDSTLRRKLMQ 204 Query: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 E SF IL + RM A + + S SI +A + GY S S F F+ ++G+TP E Sbjct: 205 EDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSRFQQHFGLTPRRLRE 264 Query: 236 KI 237 I Sbjct: 265 AI 266 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 11/128 (8%) Query: 121 KKRESVNSFILTNI---------NTFTCKITGIISFNIER-QWHLKDIAELIYTSESLIK 170 K RES ++F+L F T + +I + ++ +IA+ + S S + Sbjct: 775 KIRESFSNFLLNETKQETLGKVEQQFITDFTQYVENSIANPELNIDEIADALGLSRSNLY 834 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 ++++ S E++R R++YAK+L+ S + SI+ VA + G++S SYF FKD+Y + Sbjct: 835 RKIKSLTDYSPNELIRTIRVKYAKQLLNSKAKSISEVAYEVGFSSPSYFAKCFKDFYNES 894 Query: 230 PSHYFEKI 237 P+ Y E+I Sbjct: 895 PTEYLERI 902 >UniRef50_A5F0T8 Transcriptional regulator, AraC/XylS family n=40 Tax=Vibrionaceae RepID=A5F0T8_VIBC3 Length = 263 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 +RL LL RE+ + F+ + + + I + N L+ AE ++T+E + Sbjct: 134 KRLVQVLLDQLATRETQHHFLPSTNHKYLAPILAFVEENPTDNTTLQQWAEKVHTTERTL 193 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + + E G SFTE R Y+ +L+ +++ VA GYN S FI FK Y G+ Sbjct: 194 ARHCQAELGMSFTEWRLRVRYLYSMELL-RQGHAVKEVALTLGYNQASPFITMFKKYSGL 252 Query: 229 TPSHYFEKIIG 239 TP Y +++ Sbjct: 253 TPEQYKSRLLA 263 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 11/136 (8%) Query: 98 IKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKD 157 + A+ + L E+ C +LL + + FT ++ +++ ++D Sbjct: 212 LSFANEQAAALCEQQCAALLGQMQA-----------VQGFTGQVRRLLANAPGHHPSIED 260 Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 A + SE +++RL +EGT++ E++ D RM A + +I VA GY S Sbjct: 261 AAGKLAMSERSLRRRLSEEGTTYKEVVLDFRMELASSYLRGREMTIQEVAFLAGYADASN 320 Query: 218 FICAFKDYYGVTPSHY 233 F F YYG TP + Sbjct: 321 FHRTFSRYYGATPGEF 336 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 133 NINTFTCKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRY 191 N N+ T +I ++ I E L D+A ++Y S +++RL EG S+ + R Sbjct: 228 NTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLAAEGKSYQGVKDALRRDA 287 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 A L+ + ++ VAQ+ G++ TS F AFK + GVTP Y Sbjct: 288 AIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLY 329 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L+DIA+ ++ S + I + + E G ++ E L RM AK+L+ + + A GY+ Sbjct: 453 LQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLKRQTLKVADAAALVGYS 512 Query: 214 STSYFICAFKDYYGVTPSHYFEK 236 +TSYFI FK+Y G++PS Y E+ Sbjct: 513 NTSYFIKLFKNYTGLSPSEYMEQ 535 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 55/110 (50%) Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 ++ + N F+ ++ NT T + ++ + +W + +AE ++ S S + L EG SF Sbjct: 143 RETSAANIFLDSSDNTVTARCQDLLILSPSARWSARTVAEQLHMSVSTFHRHLAAEGGSF 202 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 +IL D R+ A I + S I +A+ GY S F F+ Y +TP Sbjct: 203 QQILDDVRLGNALNAIQTTSKPIGEIARDNGYQCPSRFTSRFQKRYQITP 252 >UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VN05_ALCBS Length = 342 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 49/82 (59%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L+ +AE + S +K+ L+ G S+ ++ + R + A++L+ + SI+ VA + GYN Sbjct: 260 LQGMAERLAVSARTLKRHLQQAGLSYRQLQDEERYQQARRLLVQSENSISEVAYRLGYND 319 Query: 215 TSYFICAFKDYYGVTPSHYFEK 236 + F AFK + G+TPS Y EK Sbjct: 320 VANFSKAFKRWSGMTPSAYREK 341 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 1/99 (1%) Query: 133 NIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRY 191 N+N + + ++ +IS+++ + + IA ++ S S ++++L+ EG S +I R+ + Sbjct: 162 NMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGH 221 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 LI + + SI +A +CGY S S F FK+ +G+TP Sbjct: 222 GLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITP 260 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 +I I+ L+DIAE + + + + + E G + + + D RM A+KL+ Sbjct: 408 RIKNIVRDEYRNDIGLEDIAERVNLAPAYLSYLFKKETGANLVKYITDYRMEQARKLLEE 467 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 I +VA+ CGY + YF FK+YYG+TP Y EK Sbjct: 468 GELKIVLVAKACGYENQPYFNRLFKNYYGMTPRQYREK 505 >UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=Dickeya RepID=C6CEQ2_DICZE Length = 282 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%) Query: 152 QWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCG 211 W +A+ + T+ S + +RL EG + T +RDTR+ A L+ S+ + +A G Sbjct: 199 HWSASRVAQALSTTASTLNRRLAQEGCTITTCVRDTRLETAMVLLQSSERPVAAIALDVG 258 Query: 212 YNSTSYFICAFKDYYGVTPS 231 Y S S F AF+ +GV PS Sbjct: 259 YESHSKFTAAFRRRFGVVPS 278 >UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q481H7_COLP3 Length = 344 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 54/98 (55%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 N F I I+ N+ + +++A +Y + ++++L ++GTSF +I+++ R AKK Sbjct: 242 NEFLITINQWIAANMHKDLCAENLASDLYLTPRTLRRKLSEQGTSFRDIVKELRCSAAKK 301 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 LI +I + G+N S F AFK + G TPS+ Sbjct: 302 LIIETQLTIEDIGCAIGFNDVSNFRAAFKKWTGQTPSN 339 >UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_9BACE Length = 1382 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 63/105 (60%), Gaps = 2/105 (1%) Query: 135 NTFTCKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYA 192 N F +IT II N+ + + + IA+ + S S + ++++ G S E +R R+R A Sbjct: 1277 NEFIERITRIIEENLMDEKIDVPTIAQELSMSYSSLYRKIKALTGMSTGEFIRKLRLRKA 1336 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 ++L+ S Y+I+ +A + G NS SYF FK+ YG++PS Y +++ Sbjct: 1337 EQLLLSGKYNISEIAHQVGLNSVSYFRECFKEEYGMSPSEYIKQL 1381 >UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMD1_ALKMQ Length = 253 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 150 ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINV--V 206 + Q L IA+L TS+S I KR++ E G SF E L D R+ AKK++ ++ + + V Sbjct: 160 DSQLDLSHIAQLFDTSKSYISKRMKQELGKSFVEYLTDIRLEKAKKILENHHARMTMYHV 219 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + + GY S YF FK YG++P Y K Sbjct: 220 STRVGYTSQHYFSRVFKKTYGISPMEYRNK 249 >UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1T3_9CLOT Length = 361 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 ++ L+ +AE + S + + R ++E GT F L + RM AK L+ S I VA +C Sbjct: 274 EFTLQTLAETLMVSPNYLSARFKEETGTGFVRFLNEKRMERAKGLLADVSRKIYEVACQC 333 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFEKII 238 G YF FK+Y G+TP Y +KI+ Sbjct: 334 GIEDVRYFTRLFKEYAGMTPKEYRDKIL 361 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 1/99 (1%) Query: 133 NIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRY 191 N+N + + ++ +IS+++ + + IA ++ S S ++++L+ EG S +I R+ + Sbjct: 86 NMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGH 145 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 LI + + SI +A +CGY S S F FK+ +G+TP Sbjct: 146 GLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITP 184 >UniRef50_B7ALJ8 Sensor protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7ALJ8_9BACE Length = 1239 Score = 60.5 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 3/127 (2%) Query: 108 LKERLCISLLAMFKKRESVNSFILTNIN-TFTCKITGIISFNIERQ-WHLKDIAELIYTS 165 ++ R + A+ KR+ +S + +N F K + NI + + +D A + S Sbjct: 1110 IRNRRTVLQKAIEVKRDDAHSIVANRMNDEFIKKAVECVRANIANENFGKEDFASALALS 1169 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 +SL+ K+++ S E +R R+ YA + + S Y++ V++ CG+++ +YF FK+ Sbjct: 1170 QSLLYKKIKALTNLSVVEFIRSIRLNYAMEKLRSGEYNVTEVSEMCGFSTPAYFSKVFKE 1229 Query: 225 YYGVTPS 231 Y+G TP+ Sbjct: 1230 YFGKTPT 1236 >UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37D6C Length = 748 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 139 CKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLIT 197 C++ G + + E QW++ IA+ +Y S+S ++K + S E L + R+ AK+L+T Sbjct: 642 CQLRGKMRKHPEEQWNISTIADSLYLSKSYLQKIYKTYFNKSIIEELIEFRLEKAKELLT 701 Query: 198 SNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + +I ++ +CGY+S +YF+ F+ GV+P+ Y Sbjct: 702 ETNMTITDISHECGYSSYNYFVRQFRHSEGVSPTEY 737 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 112 LCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 L LL++ KR SV+ + T ++S + W ++IA+ ++ S + +++ Sbjct: 128 LAALLLSLPDKR-SVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRR 186 Query: 172 RLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 +L E TSF ++L + R+ + ++ ++ + VA CGY S F FK +G+TP+ Sbjct: 187 KLALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTPA 246 Query: 232 HY 233 Y Sbjct: 247 AY 248 >UniRef50_B1XRM7 Transcriptional regulator, AraC family n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XRM7_SYNP2 Length = 342 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 29/243 (11%) Query: 19 NRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKN 78 N R ++ K N +F+++D +E+ P + +I+ I + F +N+ + Sbjct: 98 NHRHLNIKSNQMFLMADT--KEIDEIPGQEQIISIKLQIEPCFLQSFSNQPTYQLPSPLQ 155 Query: 79 GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCI---SLLAMFKKRESVNSFILTNIN 135 +I ++ ++ L GI ++ + LK+ L L+A V + + Sbjct: 156 RWIDQK----TVAPFLTTGITTSNMQVI-LKQILSCPYQGLMAQMYLESKVLELFVLQLE 210 Query: 136 TFTCKITG----IISFNIERQWHLK--------------DIAELIYTSESLIKKRLRD-E 176 FT K T + +I+R H K D+A + ++ +K+ R Sbjct: 211 QFTTKSTANCPPLPRADIDRIHHAKEILINNFDNPPSLLDLARQVGLNDHKLKRGFRHCF 270 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 GT+ LR RM AK+LI + ++ VAQ GYNS S F AFK +G+TP Y ++ Sbjct: 271 GTTVFGYLRTYRMEQAKQLIAESHLTLAGVAQSIGYNSPSRFCDAFKRQFGMTPRAYQKQ 330 Query: 237 IIG 239 + G Sbjct: 331 LHG 333 >UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJM9_9GAMM Length = 349 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 45/76 (59%) Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 IAE ++ S+ + +RL DEG F ++LR+TRM A++ + ++ VA GY+ S Sbjct: 268 IAEQLHLSKRTLHRRLHDEGVVFRDLLRETRMTLAEQYLKDGKMTLPEVALMLGYSEQSA 327 Query: 218 FICAFKDYYGVTPSHY 233 F AF+ ++ V+P Y Sbjct: 328 FNRAFRQWFAVSPRQY 343 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 +K R+ + LL +R+ FIL + N + K+ ++ + + W ++AE + SE Sbjct: 142 IKHRM-LELLLWLAQRDV--KFILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEV 198 Query: 168 LIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 +++++L E +++ D RM A +L+ + I+++A + GY S+S F F+ +G Sbjct: 199 VLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFAERFRKRFG 258 Query: 228 VTPS 231 P+ Sbjct: 259 FAPT 262 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 16/170 (9%) Query: 67 NELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCIS-LLAMFKKRES 125 N+L G+F + I + V SL +K AD+ L + C + +F KR++ Sbjct: 237 NQLNGEFNAKNDCLILNQN-----VLSL--PLKTADALVARLTIQQCKQDIQKLFLKRKN 289 Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILR 185 V+S + G +S LK +AE ++ SE ++++L E TSF ++ Sbjct: 290 VDSAAKNVKEELYDEALGFLS--------LKQVAERLHLSERTLQRQLAKEQTSFQLLIA 341 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R + A+ L+ SI +A++ GY S+F AFK + VTP Y E Sbjct: 342 EVRRKQAEFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTPKFYRE 391 >UniRef50_D1Y5U1 Putative two-component response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5U1_9BACT Length = 284 Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L++ A+ + S + + R+EG F ++L+D RM+ A+ L+ + + S+ A++ GY + Sbjct: 194 LEETAKHVGVSPGHLSRLFREEGVRFMDVLKDARMQRARGLLLAGA-SVRQAARESGYGN 252 Query: 215 TSYFICAFKDYYGVTPS 231 +YF AFK +GV PS Sbjct: 253 VAYFGLAFKKVFGVAPS 269 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 11/128 (8%) Query: 121 KKRESVNSFILTNI---------NTFTCKITGIISFNIER-QWHLKDIAELIYTSESLIK 170 K RES ++F+L F T + +I + ++ +IA+ + S S + Sbjct: 806 KIRESFSNFLLNETKQETLGKVEQQFITDFTHYVENSIANPEMNIDEIADALGLSRSNLY 865 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 ++++ S E++R R++YAK+L+ S + SI+ VA + G++S SYF FKD+Y + Sbjct: 866 RKIKSLTDYSPNELIRTIRVKYAKQLLNSKAKSISEVAYEVGFSSPSYFAKCFKDFYNES 925 Query: 230 PSHYFEKI 237 P+ Y E+I Sbjct: 926 PTEYLERI 933 >UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q893H5_CLOTE Length = 259 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 3/83 (3%) Query: 158 IAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNS--YSINVVAQKCGYNS 214 +A+ Y S+S + + ++ + G SFT+ L R+ AKKL+T N+ Y+IN ++ GY+S Sbjct: 168 VAQQFYISQSYLTRVIKQKTGVSFTDYLNKLRINMAKKLLTDNNNDYTINDISNMVGYSS 227 Query: 215 TSYFICAFKDYYGVTPSHYFEKI 237 YF AFK+Y ++P +Y K+ Sbjct: 228 QHYFSRAFKNYMEISPKNYRNKV 250 >UniRef50_B9K5W8 Transcriptional regulatory protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K5W8_AGRVS Length = 338 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 157 DIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 D+AE + S + + ++ EGTSF + +R R A++L+ S + I +A++CG+++ + Sbjct: 249 DLAEKLNLSTRSLHRHIKQEGTSFQALKDLSRQRLAERLLASTQWPIKRIARECGFDAEA 308 Query: 217 YFICAFKDYYGVTPSHY 233 F+ AFK + G TP + Sbjct: 309 SFVRAFKSWTGQTPRAF 325 >UniRef50_C0EGI7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGI7_9CLOT Length = 239 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 155 LKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L++++E + SES I +++++ G SF++IL+++++ K+ + ++S SI +A GYN Sbjct: 143 LEELSEKFHYSESYISRKIQEYTGKSFSKILQESKLEQIKRYLETSSISIENIAHLIGYN 202 Query: 214 STSYFICAFKDYYGVTPSHY 233 SY FK +YGV+P+ Y Sbjct: 203 DASYLHQVFKKHYGVSPAAY 222 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEIL 184 VNSF +I K I + Q L ++AE IY S I + + E G SF + L Sbjct: 425 VNSFNNKSIKLILRKAIDYIQEHYNEQVTLNEVAENIYVSTFYISRMFKKELGKSFVDYL 484 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 D R+ AK+L+ Y VA+K G + YF FK Y G+TPS Y Sbjct: 485 NDVRIDKAKELLKDVRYKTYEVAEKVGISDPHYFSKLFKKYSGMTPSEY 533 >UniRef50_A3K790 Putative transcriptional regulator protein (AraC family) n=1 Tax=Sagittula stellata E-37 RepID=A3K790_9RHOB Length = 341 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAK 193 I T+T ++ +++ L+ + + S + + +RLRDEGT+F ++ R R+ A Sbjct: 234 IGTWTEEVRQVLAGQPGGA-ELETVCRQLGVSPATLGRRLRDEGTTFRDLGRRHRIERAA 292 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++++ S+ VA + GY T+ F AF+D G TP ++ Sbjct: 293 RMLSETRLSVLEVALRAGYGETASFTRAFRDVMGPTPRNW 332 >UniRef50_UPI00016A75A2 transcriptional regulator, AraC family protein n=3 Tax=pseudomallei group RepID=UPI00016A75A2 Length = 336 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 46/83 (55%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L +A ++ SE +K+RLR+ GTS+ E+L R R A L+ S+ V+ K GY + Sbjct: 254 LARLASSLFLSERTLKRRLREHGTSYREMLEKARYRDACALLRETDLSLADVSAKLGYQN 313 Query: 215 TSYFICAFKDYYGVTPSHYFEKI 237 F AF+ + G+ PS Y + + Sbjct: 314 PPTFTRAFRRWSGIAPSRYRDTL 336 >UniRef50_UPI0001C35885 two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35885 Length = 206 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Query: 98 IKIADSHSLWLKERLCISLLAMFKK-RESVNSFILTNINTFTCKITGIISFNIERQWHLK 156 I + D + + ER+ + + ++ R ++ + L ++ +IT IIS ++ Q H++ Sbjct: 62 IPVLDKMDVCIGERVLTDVERVLQELRYLIDRYHLEKPDSMMVRITTIISESV-LQEHIQ 120 Query: 157 DI-AELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 DI AE + S+ + K+ R + G + +E +M YAK+L+ + + + ++ GY + Sbjct: 121 DIVAEEMGFSKDYLAKQFRGKIGITMSEYCMRVKMEYAKRLLKDTNKKVYEIGEELGYTT 180 Query: 215 TSYFICAFKDYYGVTPSHY 233 YF FK+Y G TP++Y Sbjct: 181 VDYFTRLFKNYTGCTPAYY 199 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 ++ T + ++ + W ++ A + S +++RL +E F IL + RM A + Sbjct: 164 DSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQ 223 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + SI +A+ GY S S F F+ YG+TPS Sbjct: 224 QVQDGRRSIAQIAEASGYASASRFAARFRQRYGLTPS 260 >UniRef50_A8VRA2 Methyl-accepting chemotaxis sensory transducer n=2 Tax=Bacillus RepID=A8VRA2_9BACI Length = 262 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 61/105 (58%), Gaps = 4/105 (3%) Query: 133 NINTFTCKITGIISF---NIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTR 188 N +T++ I + F ++ + +KD+A ++ + + + +++ G +F+E L R Sbjct: 150 NPDTYSEPILEALHFIDDHLSDKIGIKDVAATVHLNPNYLSAHFKEQVGMTFSEYLTRKR 209 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++YAK L+ ++S ++ +A K GY + YF+ FK+Y +TPS + Sbjct: 210 LQYAKSLLLNSSSTVADIADKSGYQTAKYFVKIFKEYEKMTPSQF 254 >UniRef50_Q1YPI7 Transcriptional regulator, AraC family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPI7_9GAMM Length = 344 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT 178 +F+ ++++ F L N+ +F + +I++ +A L+ S +++RL D GT Sbjct: 234 LFENDQAIDEF-LANLKSFMMRRLPEGEVSIDK------LASLMNISRRTLQRRLSDRGT 286 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 +F ++L++ R R A + ++ N I +A GY F AFK ++G++P Y K Sbjct: 287 NFLQVLQEVRSRMALRYLSDNRLGITEIAFLLGYADQGSFSSAFKSWHGMSPRDYRRK 344 >UniRef50_A8U8W0 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U8W0_9LACT Length = 404 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L I+ + + + + KR + E G + T ++D R+ ++K+LI N SI +A K G+ Sbjct: 322 LSTISTKLNINATYLSKRFKVETGQTITHFIQDARINHSKQLIKDNDLSITDIALKVGFE 381 Query: 214 STSYFICAFKDYYGVTPSHYFE 235 +++YF FK GVTP HYFE Sbjct: 382 NSNYFCTVFKKRTGVTPRHYFE 403 >UniRef50_B5JY44 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY44_9GAMM Length = 337 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 52/86 (60%) Query: 153 WHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 + ++DIA + ++ +++RL++EGTS+ ++ R R+A++ + +S + +A G+ Sbjct: 251 FSMQDIAGELNMTQRTLQRRLKEEGTSYAQLRDSVRFRFAEEYLRDSSMDMATIAANLGF 310 Query: 213 NSTSYFICAFKDYYGVTPSHYFEKII 238 + + F AFK + G++P Y ++ I Sbjct: 311 SEPANFYAAFKRWQGMSPGEYRKRFI 336 >UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q0VNT5_ALCBS Length = 337 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 11/128 (8%) Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 L+L E+L +A +K++ ++ +N ++ N+E ++AE + Sbjct: 210 LYLHEQLASEQVARLEKQD-----LVAQVNRLIGELLESGHANLE------EVAERLGIK 258 Query: 166 ESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 ++ RL D GT+F +++ D R R AK+L+ SI+ + G++ S F AFK + Sbjct: 259 ARQLRTRLADAGTNFNQLVADYRCRLAKRLLAGTDESIDEIVYLTGFSEPSTFYRAFKRW 318 Query: 226 YGVTPSHY 233 G+TP Y Sbjct: 319 VGMTPIEY 326 >UniRef50_C7H1K1 DNA-binding response regulator n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1K1_9FIRM Length = 518 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Query: 152 QWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 Q+ L D+A +Y S + +++ + G +FTE L + RM+ A++L+ S I VA++ Sbjct: 428 QFSLDDVAAELYISPNYLRQLFKQASGQTFTEHLTEMRMKEAQRLLDDESLKIYEVAERT 487 Query: 211 GYNSTSYFICAFKDYYGVTPSHY 233 GY + YF +K Y+ +TP+ Y Sbjct: 488 GYADSRYFSVCYKKYWHITPTDY 510 >UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_BACV8 Length = 1340 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 5/127 (3%) Query: 115 SLLAMF---KKRESVNSFILTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIK 170 SLLA+ K+ES S + N F KIT II N+E + + IA+ + S S + Sbjct: 1212 SLLALADIQPKQESAVSSLNKLDNEFLQKITQIIEENLEMEKMDIAFIADKMCMSHSTLY 1271 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 ++++ S E +R +MR +L+ S Y+I+ +A G++S +YF FKD YG++ Sbjct: 1272 RKIKGLTDMSANEFIRKVKMRKGVELLMSGQYTISEIAYMIGFSSVAYFRQCFKDEYGMS 1331 Query: 230 PSHYFEK 236 PS Y ++ Sbjct: 1332 PSDYVKQ 1338 >UniRef50_D2MM17 Response regulator receiver domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MM17_9FIRM Length = 240 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 153 WHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSN--SYSINVVAQK 209 + LKD+A+L+ S+ I K ++ E G +F +++ D R+++AK LI +N +Y + +A+ Sbjct: 150 YSLKDVAKLLQLSDGYITKLIKKELGKTFVDLVTDIRIQHAKYLIDNNEANYKLYEIAEI 209 Query: 210 CGYNSTSYFICAFKDYYGVTPSHY 233 CG+++ YF FK G++P Y Sbjct: 210 CGFSNQYYFSQVFKKVVGISPKQY 233 >UniRef50_A3Y0T9 Response regulator n=4 Tax=Vibrionales RepID=A3Y0T9_9VIBR Length = 249 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYA 192 + FT ++ + NI ++ +IAE + S + K+ G SF + + D R+ A Sbjct: 136 VKVFTSEVINFVMDNINKEIRETEIAEKCHCSTTYFSKKFHLHFGVSFRDFVCDKRILLA 195 Query: 193 KKLITSNSYS-INVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 KKLI +++ S I V+A +CGY SYF FK GVTP+ Y Sbjct: 196 KKLIEADTESKIAVIAYQCGYKDVSYFSRIFKKRTGVTPASY 237 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 7/83 (8%) Query: 155 LKDIAELIYTSES----LIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 LKD+AE ++ + S L K++++ +F+E L RM+ AK+L+ + ++ +A++C Sbjct: 173 LKDVAEHVHLNPSYFSTLFKEQMQ---LTFSEYLTRRRMQRAKELLMTTDMTVAEIAEEC 229 Query: 211 GYNSTSYFICAFKDYYGVTPSHY 233 GY + YFI FK+ G TPS Y Sbjct: 230 GYRTAKYFIHLFKEMEGKTPSSY 252 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 ++DIA+ ++ + S +++ G +F++ L R++ AK+L+T+ SIN +A+K GY Sbjct: 171 MRDIADHLHMNASYFSVLFKEQTGLTFSDYLTRRRVQRAKELLTNTRLSINEIAEKAGYQ 230 Query: 214 STSYFICAFKDYYGVTPSHYFEKIIGVTDGIN 245 + YF+ F+ + GV+P Y + + + I Sbjct: 231 TAKYFVKVFRSHEGVSPGQYRKNVSHAEETIQ 262 >UniRef50_A5VW33 Transcriptional regulator, AraC family n=36 Tax=Brucella RepID=A5VW33_BRUO2 Length = 259 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 14/146 (9%) Query: 87 PLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTC-KITGII 145 PL+ ++ +G+ I +W + C++++A +K+ V L++ N C +I I Sbjct: 109 PLATLYLRAQGLDI-----MW---QACLAMMAEKEKQPPV----LSSANRQDCERIREFI 156 Query: 146 SFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSIN 204 N++R + IA+ + S S +++R + GT+ ++ R+ A ++ +S I+ Sbjct: 157 MANLDRDLTIDLIAQKVAISASTVQRRFKKHYGTTLYNFIKQQRLEAACVALSRDSIPIS 216 Query: 205 VVAQKCGYNSTSYFICAFKDYYGVTP 230 A GYN+TS F AF+ YG +P Sbjct: 217 QAAHLAGYNNTSTFTSAFRKLYGFSP 242 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 11/140 (7%) Query: 94 LFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQW 153 L + + A+ + L E+ C +LL K+ + + + + K GII Sbjct: 207 LDQPLSFANEAAAQLCEQQCAALLGELKRTDGIEGEVRRILANQPGKYPGII-------- 258 Query: 154 HLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 ++A + E +++RL DE T++ +++ + RM A + N+ SI +A GY Sbjct: 259 ---EVARALAMGERTLRRRLADEDTTYKQVVLEFRMELAASYLRGNAMSIQEIAYVTGYA 315 Query: 214 STSYFICAFKDYYGVTPSHY 233 S F F + G+TP+ Y Sbjct: 316 DPSNFHRTFNKHQGLTPNAY 335 >UniRef50_P68913 Uncharacterized HTH-type transcriptional regulator Rv1395/MT1440 n=15 Tax=Mycobacterium RepID=Y1395_MYCTU Length = 344 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 96 EGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHL 155 E + AD H+L + C L+ ++R + + + + + + +G+ Sbjct: 214 EPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKL----FRDSGLFPT-------F 262 Query: 156 KDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNST 215 D+A + +++RL +EGTSF +L + R A L+ + ++ V+ + GY Sbjct: 263 TDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTEV 322 Query: 216 SYFICAFKDYYGVTPSHY 233 S F AFK +YGV PS Y Sbjct: 323 STFSHAFKRWYGVAPSEY 340 >UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V3C5_PSEA8 Length = 357 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 4/99 (4%) Query: 145 ISFNIERQWH----LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNS 200 + +ERQ L+++A ++ S +K+ L D GTSF ++L R R A +L+ Sbjct: 240 VRLELERQEQRFPNLEEVAARLHLSSRSLKRHLHDAGTSFRQLLGQARQRQALRLLRRPE 299 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 S+ +A GY+ + F AFK + G PS +++G Sbjct: 300 VSLQRIALYLGYSDPTNFTRAFKRWTGEPPSDTRARLLG 338 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Query: 133 NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRY 191 N N ++ I+ N E++ LK++++ IY + + + E G ++ E L R+ Sbjct: 422 NENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVGCTYAEYLTRIRIEA 481 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 AKK + + S +I+ +A+K GY +YF FK G++PS + Sbjct: 482 AKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEF 523 >UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WD12_ACTMD Length = 350 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 44/76 (57%) Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 +A + S +++RL GTS+ E+L + R A++L+ + S+ A++ GY S Sbjct: 262 VARELSVSTRTLRRRLAGAGTSYRELLDEVREALAERLLRGGALSVEEAARRLGYAEASS 321 Query: 218 FICAFKDYYGVTPSHY 233 FI AFK + GVTP+ + Sbjct: 322 FIHAFKRWKGVTPATW 337 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 6/102 (5%) Query: 141 ITGIISFNIERQWH-----LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 + G++ I+ W L+ +AE ++ S +K+RL+ GTS+ +I +R R A Sbjct: 247 VAGMVRLQIQ-DWEGRLPTLEQVAEQLHMSPRTLKRRLQTAGTSYQQIKDSSRFRRAIHQ 305 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + + S+ +A+ GY+ S F AFK + +TPS + +++ Sbjct: 306 LEATDSSLESIAELLGYSDASNFTKAFKSWAEMTPSEFRQRL 347 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 71/130 (54%), Gaps = 7/130 (5%) Query: 108 LKERLCISLL---AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYT 164 L+ERL L + + E V S + F +I + + + +++++ ++E + Sbjct: 760 LRERLLEKLRDNKLLLSEPEKVESIDDAFLRKFAEQIEAVYA---DPEYNVEKLSETLGL 816 Query: 165 SESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 S + +++++ GT+ E LR R+ A +L+ N+Y+++ VA + G++S +YF FK Sbjct: 817 SRGHLHRKIKELTGTAPVEFLRTYRLNKATQLLRQNAYTVSEVAYRTGFSSPAYFSKCFK 876 Query: 224 DYYGVTPSHY 233 YGVTP+ Y Sbjct: 877 AVYGVTPTEY 886 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 46/92 (50%) Query: 139 CKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITS 198 K+ +I ++ W D+A SE+ ++ L G F ++L TR+ L+ S Sbjct: 164 SKVRSLIETDLSYAWRATDVASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQS 223 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 I+ +A CG+N+ S+F AFK +G+ P Sbjct: 224 THEPISNIALDCGFNTPSHFSEAFKKRFGIRP 255 >UniRef50_A0M6C0 Protein containing AraC type HTH domain n=18 Tax=Bacteroidetes RepID=A0M6C0_GRAFK Length = 296 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 155 LKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L++++E I S +K+ + G S L D +M YA+KL+ S Y++N V K GY+ Sbjct: 212 LQELSEEIGLSLKKLKEGFKQIYGDSVYSFLFDYKMEYARKLLESGDYNVNEVGLKVGYS 271 Query: 214 STSYFICAFKDYYGVTPSHY 233 + S+FI FK +G TP Y Sbjct: 272 TASHFIAGFKKKFGTTPKKY 291 >UniRef50_C0Z962 Probable two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z962_BREBN Length = 234 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 20/201 (9%) Query: 49 RIVDIDKKTCLSF-FIDVNNELPGKFTLDKNGYIAEEEPPLSLV----FSLFEGIK---- 99 R + I +K L F+D+N LPGK L + + + L+ + F K Sbjct: 37 RAMAISQKVPLHLAFLDIN--LPGKSGLVLGEELRAQHKDIELIIVTAYQDFHYAKQSIR 94 Query: 100 --IADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKD 157 + D + + E + +L ++K +++++ II + +L D Sbjct: 95 LGVVDYITKPVIESELVDILKKYQKSPALSAY-----TRIISDAMNIIHQKFAEKLNLAD 149 Query: 158 IAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKK-LITSNSYSINVVAQKCGYNST 215 +A ++ + + + +R +E G SF+E L R++ +KK LI +SI+ VA++ G+NS Sbjct: 150 LAAEVHINPTYLSRRFHEEVGVSFSEYLMQYRIQMSKKFLIAHPDWSISTVAERTGFNSQ 209 Query: 216 SYFICAFKDYYGVTPSHYFEK 236 YF F+ G TP Y +K Sbjct: 210 HYFSTIFRKVVGKTPKEYRDK 230 >UniRef50_A4A3Z8 Transcriptional regulator (AraC family protein) n=3 Tax=unclassified Gammaproteobacteria RepID=A4A3Z8_9GAMM Length = 356 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 123 RESVNSFILTNIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFT 181 R V + + T+ + ++T K+ + N+ L D+A + +++RL EG +F Sbjct: 241 RHPVLTMLTTSYDFSWTAKVRAQLRQNLLFMPELPDVAAALDLHPQTLRRRLAAEGNTFK 300 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 +I D R A + S S+ VA + G++ S FI AFK + G+TP Y Sbjct: 301 QIKSDIRRDTALHFLGKRSLSVEEVAHRAGFSEASAFIRAFKAWTGLTPYAY 352 >UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ29_HYPNA Length = 338 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 47/83 (56%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 + A+L+ SE +++RL +EG +F ++L+ R A+ + ++ +A GY+ Sbjct: 253 MAGTAQLLGFSERTLRRRLAEEGVNFAQLLQGARKEAAEIYVREGKLTLTEIAHATGYSD 312 Query: 215 TSYFICAFKDYYGVTPSHYFEKI 237 S F+ AF+ ++GV+P Y ++ Sbjct: 313 QSAFVRAFRGWHGVSPGAYRREV 335 >UniRef50_B9R5F4 Transcriptional regulator, AraC family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R5F4_9RHOB Length = 334 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 13/135 (9%) Query: 107 WLKERLCISLLAMFKKRESVNSFI-LTNINTFTCKITGIISFNIERQWHLKDIAEL---- 161 W R + +A + +R +++F+ + + + ++ G+I I + L + EL Sbjct: 188 WPLHRSAEAAVA-WARRTPMDAFMPVALLQGVSQQVAGLIEAAIIDKRPLPSMDELASLL 246 Query: 162 ---IYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 +YT +++RL+ EG S +I + +A+ ++ SI +A + G++ TS F Sbjct: 247 EMPVYT----LRRRLKKEGVSLPDIRLQVKRDHARSMLAETGESIEAIALRLGFSETSAF 302 Query: 219 ICAFKDYYGVTPSHY 233 I AFK++ GVTP Y Sbjct: 303 IRAFKEWTGVTPRTY 317 >UniRef50_Q1N423 Transcriptional regulator, AraC family protein n=1 Tax=Bermanella marisrubri RepID=Q1N423_9GAMM Length = 363 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 59/99 (59%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 ++F K+T I+ N + +A++++ SE + + L E ++ +I+R+ R+ A+ Sbjct: 256 SSFRKKVTTILLSNGDMSVDKSQVAQVLHMSERTLTRHLEKESITWRQIVREVRLNKAQL 315 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 L++++ SI V+A + G++S S F AF + G++PS Y Sbjct: 316 LLSASDKSIQVIAAEVGFSSVSAFSRAFVKHIGMSPSLY 354 >UniRef50_D1N1E5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1E5_9BACT Length = 277 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 36/191 (18%) Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + ELP +F + +AE+ GI+ H+ WL E + + L + Sbjct: 106 YFRFGKELPPEFVGRQPAELAEKS---------VAGIRF---HARWLAELVRMELAGCRE 153 Query: 122 KR-----ESVNSFILTNINTFTCKITGIISFNIERQWH----LKDIAELIYTSESLIKKR 172 +R + +++ L F I+R +H L D+AE++ + + + Sbjct: 154 RRPPGGKKRSDAYYLEQCERF-----------IDRSYHQEPALADLAEILRVNPNHLGSA 202 Query: 173 LR--DEGTSFTEILRDTRMRYAKKL--ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 +R G SF E+L + R+R AK L + + +++ V ++CG++ ++YF F+ + G Sbjct: 203 IRRASNGRSFRELLTERRIREAKLLFSLEPSRHTVAGVGRRCGFSDSNYFSTVFRKHTGC 262 Query: 229 TPSHYFEKIIG 239 +P + +I G Sbjct: 263 SPREFLRRISG 273 >UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2_BACV8 Length = 1346 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 45/74 (60%) Query: 164 TSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 ++ +L +K G S E +R +M+YA++L+ Y+I+ VA K G NST YF FK Sbjct: 1270 SNSTLYRKMKALTGLSTNEYIRKIKMQYAERLLLEGKYNISEVAFKVGINSTVYFRQCFK 1329 Query: 224 DYYGVTPSHYFEKI 237 D +G+ PS Y +KI Sbjct: 1330 DEFGMAPSDYLKKI 1343 >UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A8H057_SHEPA Length = 344 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 47/79 (59%) Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 IA+ + S ++++LR+EGTSF+E + R A+K + + S+ +A + G+ S Sbjct: 262 IAKAFHMSSRNLQRKLREEGTSFSEQVEQLRKDLAQKYLATPQLSMLEIAFRLGFKDPSN 321 Query: 218 FICAFKDYYGVTPSHYFEK 236 F AFK +YGV+P Y +K Sbjct: 322 FTRAFKRWYGVSPLQYRQK 340 >UniRef50_Q7MFB7 AraC-type DNA-binding domain-containing protein n=32 Tax=Gammaproteobacteria RepID=Q7MFB7_VIBVY Length = 287 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 2/130 (1%) Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 +RL LL +E+ + F+ ++ + + I + N L + AE ++T+E + Sbjct: 159 KRLVQVLLDQLATKETQHHFLPSSDHKYLAPILAHVEENPTDTTSLSEWAEKVHTTERTL 218 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + + E G SFTE R Y+ +L+ ++ VA GYN S FI FK Y G Sbjct: 219 ARHCQSELGMSFTEWRLRVRYLYSMELLRKGQ-TVKEVALTLGYNQASPFISMFKKYSGQ 277 Query: 229 TPSHYFEKII 238 TP Y +++ Sbjct: 278 TPEQYKNRLL 287 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 98 IKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKD 157 + +A+ + E+ C L +K+E+ +S I+ I + G+ F+ D Sbjct: 214 LPLANPLAKKAHEKECRELSLRIRKQETASSRIVQEIE---FRRQGVPGFD--------D 262 Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 +A + S +++RL++EGTSF I+ D + A L+ + + I +A + GY Sbjct: 263 LARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTTNLPIQQIALELGYEDLPN 322 Query: 218 FICAFKDYYGVTPSHY 233 F AFK + G TP Y Sbjct: 323 FYRAFKRWTGKTPGDY 338 >UniRef50_C6CT05 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT05_PAESJ Length = 397 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKRLRDE-GT 178 + R SVN T ++ F + IIS E R L+ IA + S + + + E GT Sbjct: 281 EARASVNRE--TKLSPFVRRTKEIISDRFEDRDLSLEGIAGELNVSAVYLSRIFKQEMGT 338 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 SF +L RM+ A +L+ +I+ +A+K GY S YF AFK G+ P+ Y Sbjct: 339 SFISMLTAARMKEAIRLLNETDQAIHEIAEKTGYESQHYFSTAFKKTTGLPPNQY 393 >UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH05_DESAA Length = 338 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%) Query: 159 AELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 A+ + S +++ LR++GTSFTEIL +TR A+ LI S+ VA + GY+ +S F Sbjct: 260 AQSMGISPRSLQRHLRNQGTSFTEILDETRKHLAENLIRYPHLSVTDVAFQLGYSDSSNF 319 Query: 219 ICAFKDYYGVTPSHY 233 AF+ ++G +P+ Y Sbjct: 320 SRAFRRWFGKSPNMY 334 >UniRef50_UPI0001C3708E response regulator n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3708E Length = 581 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 112 LCISL--LAMFKKRESVNSFILTNINTFTC--KITGIISFNIERQWHLKDIAELIYTSES 167 LC++L L + KR++ + N F ++ + + E+ W ++ + + + S S Sbjct: 448 LCLALEHLTLPGKRDTAREKSIENPQLFEALVPLSEEMQQHPEKDWSIQVLCQHTHISRS 507 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 +++ + G S E L D RM+ AK L+ SI+ VA CGY S S+F FK Sbjct: 508 YLQRMYKTYFGKSIFEELIDFRMQKAKALLRDTELSISEVAAACGYGSYSHFANQFKAQE 567 Query: 227 GVTPSHYFEK 236 +TPS Y EK Sbjct: 568 DITPSRYREK 577 >UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBS2_LARHH Length = 262 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 41/74 (55%) Query: 157 DIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 +++ + SES +++ L DEG S E+ R+ A L+ ++S I VA+ CGY S S Sbjct: 182 ELSRRLAMSESTLRRHLADEGHSLRELREHCRLERALALVQTSSLPIGQVAEACGYASAS 241 Query: 217 YFICAFKDYYGVTP 230 F F+ +G TP Sbjct: 242 RFSARFRTRFGCTP 255 >UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G6T3_ABIDE Length = 534 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 155 LKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L +A+ + S++ I + L+ SF ++L RM A+K+I + + + +A+K GYN Sbjct: 451 LDSVADKFHMSKTYISRILKKYTNQSFLQLLISRRMDIARKMIAEDKFKLYEIAEKVGYN 510 Query: 214 STSYFICAFKDYYGVTPSHY 233 SYFI FK YGVTP+ Y Sbjct: 511 DFSYFIQVFKKKYGVTPNEY 530 >UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65NG7_BACLD Length = 400 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 150 ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 ER++ LK +A+ + S + + ++ E G +F ++L + RM A L+ + SI+ +A+ Sbjct: 303 EREFSLKQMADALQVSSVYLSRMMKKELGVTFVQLLTEMRMDQAVHLLETTPLSIHDIAE 362 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHY 233 + GY++ YF FK GV+P+ Y Sbjct: 363 QTGYDTQHYFSTVFKKTMGVSPNQY 387 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 151 RQWH-LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 R W L+ +A+ ++TS +++ LR+EGTSF E+ R A + + +I+ +A++ Sbjct: 276 RTWPDLEQVAQQLHTSPQTLRRHLREEGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQ 335 Query: 210 CGYNSTSYFICAFKDYYGVTPSHY 233 G++ S F AFK + G+TP Y Sbjct: 336 LGFSEPSAFHRAFKKWTGLTPGAY 359 >UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_BACSE Length = 1473 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 155 LKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 ++DIA + S S+ K+L+ G S E L++ RM+ A +LI ++ YS+ +A G N Sbjct: 1385 VEDIANEVNMSRSVFFKKLKTLTGLSPVEFLKEIRMKRAAQLIETDEYSMAQIAYMVGLN 1444 Query: 214 STSYFICAFKDYYGVTPSHYFE 235 + YF FK YG+TP+ Y E Sbjct: 1445 DSHYFSKCFKQQYGITPTEYKE 1466 >UniRef50_Q5E3W4 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5E3W4_VIBF1 Length = 284 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L ++AE + TSES I + + G SF++ L+ R+ +A L+T + I +VA++ GY Sbjct: 198 LLNVAEHLCTSESTIHRLFQSHFGESFSQYLKKLRLNHAANLLTHSRLPIGIVAEQVGYR 257 Query: 214 STSYFICAFKDYYGVTPSHYFEK 236 + + F FKDY +TP+ Y +K Sbjct: 258 NQTNFNRLFKDYKQLTPNQYRKK 280 >UniRef50_D0BXH8 Transcriptional regulator n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0BXH8_9GAMM Length = 344 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 11/146 (7%) Query: 93 SLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQ 152 L + A ++ + ERLC+ L++ ++ ++ + ++ + F NI Sbjct: 209 QLLHTLPHAKPNTAAMCERLCMELIS--QRHTTLTTTMI--VRDFLMNAPSGTLLNI--- 261 Query: 153 WHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 K+I+ + SE +K+RL+DE SF + +T R A L+ N ++ VA+ G+ Sbjct: 262 ---KEISNKLNMSERTLKRRLQDENISFRALQNETLHRRADSLLAQN-LNLGQVAEILGF 317 Query: 213 NSTSYFICAFKDYYGVTPSHYFEKII 238 + S F A+K + GV PSHY +++I Sbjct: 318 SDLSTFSQAYKRWTGVAPSHYKKQMI 343 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 108 LKERLCISLLAMF-KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 L E L I LL F +K E + F+ KI +I + ERQW L I++++ S Sbjct: 182 LTEVLFIQLLNSFIEKNEHLTGFLSALKEPRLNKILQLIHQHPERQWTLDIISDVVGMSR 241 Query: 167 SLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + ++++ + G S + RM A +L+ ++ S+ +A G++ AFKD+ Sbjct: 242 ATLQRKFKAAIGVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFKDH 301 Query: 226 YGVTPSHYFEKI 237 YG TPS + +K+ Sbjct: 302 YGDTPSQFRKKL 313 >UniRef50_A6B243 Transcriptional activator of virulence loci n=4 Tax=Vibrio parahaemolyticus RepID=A6B243_VIBPA Length = 247 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 56/99 (56%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 ++ + +I +IS I+ +W ++I++ + S++ + +R+ E T+ ++++ RM A Sbjct: 132 DSISERIHRLISKQIQHRWTAEEISKNLNMSKATLMRRISQEKTTLSDLILSARMNKAAY 191 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 L+ + I VA G++S SYF FK+ YG +P + Sbjct: 192 LLLKKKHPIKKVAHLTGFSSASYFCKKFKETYGNSPKQF 230 >UniRef50_Q39M95 Two component transcriptional regulator, AraC family n=29 Tax=Burkholderia RepID=Q39M95_BURS3 Length = 278 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L+++A + T E + + RD G + E LRDTR+R A + S I +A++ G++ Sbjct: 178 LEELARQVGTHEKRLSRVFRDHLGQTVFEYLRDTRLRAAMHFLAETSMGIGDIAEEIGFS 237 Query: 214 STSYFICAFKDYYGVTPSHY 233 + F AF++ +G+TPS + Sbjct: 238 TPGNFATAFRERFGITPSDW 257 >UniRef50_C0D0A3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D0A3_9CLOT Length = 487 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 124 ESVNSFILTNINT--FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSF 180 E +N I + + ++ + + + LKD+A L + + + + K +D+ G + Sbjct: 372 EGINKSIRKRVQSGGLAFQVAAYLQQHYDEDLSLKDLANLFFITPTYLSKWFKDKTGATI 431 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 T+ + + RM A++L+ S S+ + ++ GY ++YF FK YG+ PS + Sbjct: 432 TQFVENLRMERARELLEYTSLSVGEIGRRVGYEDSNYFSRVFKKIYGIPPSKW 484 >UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MT39_SACVD Length = 321 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 16/152 (10%) Query: 87 PLSLVFSLFEGI-----KIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKI 141 P++ V SL + A+ H+ + E+ C LLA ++R + + Sbjct: 167 PVNAVISLPRALLDRRMPQANDHTAAVCEQQCRELLAKRRERGGTARRVRDRLLATDGLH 226 Query: 142 TGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSY 201 T + + AEL T+ +L ++RL EGTS+ ++ + R A++L+ + S Sbjct: 227 TDMDTV----------AAELAMTARTL-RRRLAAEGTSYRALVDEVRQTLAEELLATRSL 275 Query: 202 SINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 S+ VA + GY + F+ AF + GV P Y Sbjct: 276 SVEQVAYRLGYGDAASFVRAFTRWKGVPPGRY 307 >UniRef50_C6LB63 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LB63_9FIRM Length = 517 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 21/165 (12%) Query: 89 SLVFSLFEGIKIADSH-SLWLKERLCISLLAMFKKR------ESVNSFILT---NINTFT 138 +++ LF+ +K DS S +K++ SL+ +++ + V F+L NIN F Sbjct: 347 AVMLLLFQIVKALDSMMSEEMKQKTDESLMRIYQSQTLERLLRFVYGFLLEIGKNIN-FQ 405 Query: 139 CKITGIISFNIERQW---HLKD------IAELIYTSESLIKKRLRDE-GTSFTEILRDTR 188 +I G+ R++ H D IAE Y + S ++ G SF+ + + R Sbjct: 406 KEIRGVDVLEHCREYLEKHYMDEITMEMIAEKYYFNASYFSTVFKNYFGKSFSGYMTELR 465 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 M+ AK+ + S + I +A K GY +YFI AFK +YG TP Y Sbjct: 466 MQKAKEFLISTDWKIKEIASKTGYRDANYFIRAFKKFYGYTPEEY 510 >UniRef50_D0S2K9 AraC-type DNA-binding domain-containing protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2K9_ACICA Length = 236 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Query: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYA 192 ++T K+ IIS NI Q+ L ++ + + S+S +K + G S E + RM+ A Sbjct: 133 LDTRIYKVINIISENINHQYSLDELCSIAHLSKSQLKVLFKKNIGLSIREYCSNERMKKA 192 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 L+ + + ++A CGY + S F F +Y+G+ P+ Y K Sbjct: 193 VSLLVNTDMPLTIIAAHCGYQNLSAFSKRFSEYHGIPPTKYRSK 236 >UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3X5_9BACT Length = 286 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAK 193 + F ++ N+ R + D+A+ S +R + EG S E + D +MR A Sbjct: 181 DDFLKRVHAYALANLSRPLSVGDLADAAGCSRWHFSRRFQQLEGKSPHEFVTDLKMRLAV 240 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 +L+ + + S+ VA+ CG+ SYF F+++YGV+P+ + Sbjct: 241 RLLQTTNGSVKEVAENCGFEDASYFCKVFRNHYGVSPAGF 280 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 45/79 (56%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L+D+AE + S ++++ + +GT+F I+ D R YA + +Y + +AQ G++ Sbjct: 247 LQDVAEHLGVSARNLQRKFKQQGTNFKTIVDDIRKEYAFTYLLQTNYKMTYIAQILGFSE 306 Query: 215 TSYFICAFKDYYGVTPSHY 233 S F AFK + G+TP Y Sbjct: 307 QSVFQRAFKRWTGMTPGEY 325 >UniRef50_A7JVV0 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JVV0_PASHA Length = 298 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 20/189 (10%) Query: 58 CLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE---RLCI 114 CL F+ D EL +L + E PL + + + + A++ +L +K L + Sbjct: 112 CLHFYYDHQAEL--MESLPEMIVFQVAETPLKAMLDILK--QEAETPNLAVKSVVNSLAV 167 Query: 115 SLLAMFKKRESVNS-----FILTNINTFTCK-ITGIISFNIERQWHLKDIAELIYTSES- 167 +L M + VN IL + + I N E +W + D+A I+ S + Sbjct: 168 VILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMAAFIHLSRAQ 227 Query: 168 ---LIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 L K L +F + R++ A L+ S + S+ +A CG+ S S+FI AFK Sbjct: 228 LVRLFNKHLCISPHAF---VHKIRLQKAAMLLKSQAGSVLSIALSCGFQSESHFITAFKK 284 Query: 225 YYGVTPSHY 233 Y VTPS Y Sbjct: 285 QYCVTPSQY 293 >UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photobacterium angustum S14 RepID=Q1ZU86_PHOAS Length = 239 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%) Query: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAK 193 IN+ TC ++S +++R+W I EL+Y S + + + L + TS E+ + R+ A Sbjct: 139 INSITC----LVSNDLKRKWSYDLICELLYLSPATLYRELSKKNTSLKELTNNLRLTEAA 194 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 L+ + +A + G+ S+SYF FK + TP Y Sbjct: 195 TLLRGTKLPVGKIANEVGFGSSSYFGKVFKQTFNCTPVEY 234 >UniRef50_A9ETR6 AraC-type DNA-binding domain-containing protein n=2 Tax=Rhodobacteraceae RepID=A9ETR6_9RHOB Length = 344 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%) Query: 139 CKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITS 198 +IT +SFN Q DIA+ S S + ++L EGT++ ++L+DTR R A++ + Sbjct: 250 SEITSRLSFNAPTQ---DDIAKTFGMSISTLGRKLAKEGTTYKQLLKDTRQRLAEQYLDD 306 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 S+ +A GY+ + F A+K + G +P Sbjct: 307 PKLSLAEIAFGLGYSDQAAFTNAYKSWTGHSPG 339 >UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NUZ5_BACSE Length = 305 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 KI I+ N R L +IAE+ + S + +D G +F + + D R+ YA KL+T Sbjct: 205 KIISFINSNYTRSLKLDEIAEMANMNSSAFCRFFKDATGKTFLQYVADMRIGYACKLLTI 264 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 I+ +A +CG++S +F FK G+TP+ Y +I+ Sbjct: 265 GDMEISQIAVECGFDSIPHFNRTFKQLTGLTPTQYRNQIM 304 >UniRef50_C9PF84 Transcriptional regulator AraC family n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PF84_VIBFU Length = 248 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 145 ISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSI 203 +S I W D A+ + SE + ++ + E G +FTE LR R+ +A +L+ S +S+ Sbjct: 154 VSDRIAHPWTATDAAKYLGQSERTVSRKFQQELGLTFTEWLRQKRLVHALELLASG-HSV 212 Query: 204 NVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 A + GY+S S F FK G+TPS Y I+ Sbjct: 213 LDSALEIGYDSPSAFSAMFKSRIGLTPSEYTASIL 247 >UniRef50_B9XJ53 Transcriptional regulator, AraC family n=1 Tax=bacterium Ellin514 RepID=B9XJ53_9BACT Length = 338 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 44/76 (57%) Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 +A+ + S +++R+ DEG +F +++ + R A++ +T +S IN A GY+ + Sbjct: 254 VAKELGMSARTLQRRITDEGATFRQLVLEARQELARQYLTQSSIEINEAAYLLGYDDANS 313 Query: 218 FICAFKDYYGVTPSHY 233 F AFK + G TP H+ Sbjct: 314 FYRAFKTWEGTTPGHW 329 >UniRef50_B8KMA4 Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KMA4_9GAMM Length = 343 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%) Query: 157 DIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 DIA ++ SE + +RL++EGTSF ++ + +A+ +T S+ +A GY + Sbjct: 252 DIAARLHVSERTLNRRLKEEGTSFRKLRNEVLDEWARSYLTDGKDSVESIAAALGYGDAA 311 Query: 217 YFICAFKDYYGVTPSHYFEKII 238 F AFK + +TP+ Y E+++ Sbjct: 312 NFRRAFKARHSMTPTMYREQLL 333 >UniRef50_A8EX63 Transcriptional regulator, AraC family n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EX63_ARCB4 Length = 283 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 92 FSLFEGIKIA-DSHSLWL-----KERLCIS-----LLAMFKKRESVNSFILTNINTFTCK 140 +S FE +KIA S +L KE L + LL + K +S+ F INT + Sbjct: 126 YSKFEELKIAIKSFENYLEKDFSKELLKLKIEELFLLVLQKDEKSLIQFFNKIINTTKDR 185 Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEI-LRDTRMRYAKKLITSN 199 I I+ N++ +DI L + S I+K +DE + ++ + + R+ A L+ + Sbjct: 186 IKYILESNLDFVNSFEDICSLTRQNPSKIRKYFKDEFNTTPKLWINEKRLEKATLLLKTT 245 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 +I+ +A CGY+S S+FI FK Y +TP Y KI Sbjct: 246 DETISQIATSCGYSSVSWFILEFKKRYNLTPKDYRYKI 283 >UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT67_9GAMM Length = 358 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Query: 135 NTFTCKITGIISFNIERQW-HLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAK 193 ++ +I +I + +R L+++AE +Y + + +RLR+E TSF +I R A Sbjct: 251 HSLAIRIRNLIGNDFQRPLPGLQEVAERLYMTTPTLHRRLREEQTSFQQIKDHCRRDAAI 310 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 ++S Y+ + +++ G++ +S F AFK + G+TP Y +K I Sbjct: 311 GYLSSAQYTTSELSELMGFSDSSTFHRAFKKWTGLTPQDYRKKHISA 357 >UniRef50_A6KZ04 Two-component system sensor histidine kinase/response regulator, hybrid n=7 Tax=Bacteroides RepID=A6KZ04_BACV8 Length = 1378 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 73/128 (57%), Gaps = 6/128 (4%) Query: 112 LCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER-QWHLKDIAELIYTSESLIK 170 L S+ + E+ + I+ + F +I I++ N++ ++++K +AE++ S+ + Sbjct: 1247 LMPSITVNGSQEENTETIIIED--PFITQILNIVNENLQNPEFNVKKLAEMLNMSQPTLY 1304 Query: 171 KRLRDEGTSFT--EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 ++++ + T+FT E++R R++ + +L+ S Y++ VA+ GYN F F D+YG Sbjct: 1305 RKVK-QLTNFTIIELVRGVRLKRSAELLRSRKYNVQEVAEMVGYNDIPTFRKHFVDFYGT 1363 Query: 229 TPSHYFEK 236 TPS + K Sbjct: 1364 TPSTFNSK 1371 >UniRef50_C9XN35 AraC-family transcriptional regulator n=6 Tax=Clostridium difficile RepID=C9XN35_CLODC Length = 312 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 10/150 (6%) Query: 93 SLFEGIKIADSHSLWLKE--------RLCISLLAMFKKRESVNSFILTNINTFTCKITGI 144 S E I I++S++ + E +L I L +F K E++ S + K+ Sbjct: 150 SFIEQINISESNTEFGNEILRNALFIQLMIFLNRIFLKNENMESTEDVFYDETIKKVLNY 209 Query: 145 ISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSI 203 I+ NI+ + + I+ + S+ + ++ + GTS + R+ AK LIT N Y + Sbjct: 210 INSNIDDKLSIDSISSEFFISKYYLMRKFKSHTGTSIHNYIVQKRLILAKSLIT-NGYLM 268 Query: 204 NVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + V KCG+N S F+ AFK YGV+P +Y Sbjct: 269 SEVCNKCGFNDYSSFVRAFKKNYGVSPKNY 298 >UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR07_9CLOT Length = 515 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 +I+ IS N + L+DIA+ I+ S + + + R++ G + TE + R+ AK L+ + Sbjct: 417 QISRYISANYQSNITLQDIADQIHISSAYVSRLFRNKTGITITEAINRARIDQAKLLLGN 476 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 Y + +AQ G+ +YF F Y G +PS Y Sbjct: 477 PEYKVYEIAQMVGFEDAAYFTSVFTKYVGCSPSEY 511 >UniRef50_UPI0001789612 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789612 Length = 405 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 151 RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 R+ L+ A+ + S + + L+ E GTSF ++ TR++ A +L+ + SI +A++ Sbjct: 313 RELTLESFAQALQVSPVYLSRMLKKELGTSFITLMTQTRIQKAIQLLNATELSILDIAER 372 Query: 210 CGYNSTSYFICAFKDYYGVTPSHY 233 GY+S YF AFK GV+P+ Y Sbjct: 373 VGYDSQHYFSTAFKKVMGVSPNRY 396 >UniRef50_D0LMC0 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMC0_HALO1 Length = 341 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 45/79 (56%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L +A+ + S +++RLRD GTSF ++ + R A+ + + +++ +A GY+ Sbjct: 252 LGTVAQAVGMSTRTLQRRLRDAGTSFAAVVEEERSSAARAYLGDQALAVSEIAYLLGYSE 311 Query: 215 TSYFICAFKDYYGVTPSHY 233 S F+ AFK + G TP+ + Sbjct: 312 ASAFVRAFKRWTGKTPNQF 330 >UniRef50_Q8AB44 Sensor protein n=5 Tax=Bacteria RepID=Q8AB44_BACTN Length = 1370 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 11/137 (8%) Query: 108 LKERLCISLLAMFKKRESVNSFILTNINT---------FTCKITGIISFNI-ERQWHLKD 157 L+ R+ ++ K+E S + NI++ F K+ +I+ N+ E + + Sbjct: 1230 LEARINNFIMHKKNKQEEFRSNVEVNIDSLEPSSIDKEFLDKVISVINSNMSEGDFDVVQ 1289 Query: 158 IAELIYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 +A+ + S+S + ++++ G S E +R+ R+++ +L+ S S+ VA +CG+++ Sbjct: 1290 LADALAVSKSSLYRKMKLATGLSPIEFIRNIRLKHGSQLLKDKSISVAEVAYECGFSNPK 1349 Query: 217 YFICAFKDYYGVTPSHY 233 YF FK+ +GVTP Y Sbjct: 1350 YFATCFKEEFGVTPKEY 1366 >UniRef50_D1B2G1 Helix-turn-helix, AraC domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B2G1_SULD5 Length = 339 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Query: 133 NINTFTCKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRY 191 N TF ++ G+I N+ E L+ +A + I++ L+ EGTSFT L + R + Sbjct: 233 NYKTFKKRVCGLIFLNMGELDVSLESVATKMGMHARTIQQNLKKEGTSFTLCLNEIRQKL 292 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 A + + +A GY S F+ AFK +YGVTP + E+ Sbjct: 293 AIHYLLK-GFDSGTIATYLGYAELSPFLVAFKKWYGVTPRTWLEQ 336 >UniRef50_B2IB01 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B2IB01_BEII9 Length = 344 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 50/84 (59%) Query: 152 QWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCG 211 Q L D+A+ + S+ +++R+ +EG++F ++L + R + L+T + I+ VA G Sbjct: 246 QPGLSDVAKQLGMSDRTLQRRITEEGSTFRDLLSEARRDLGRHLLTDPATDIDEVACLLG 305 Query: 212 YNSTSYFICAFKDYYGVTPSHYFE 235 Y T+ F AF+++ G+ P+ + E Sbjct: 306 YQDTTSFYRAFREWEGMPPNRWRE 329 >UniRef50_Q2B9I5 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B9I5_9BACI Length = 520 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 153 WHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCG 211 W+L D AE + +S + +R E G +F E L R+R AK+L+ I +A CG Sbjct: 432 WNLSDCAESLGIHKSTLSRRFAAEKGLTFRERLHQIRIREAKRLLIETDLPIERIAAMCG 491 Query: 212 YNSTSYFICAFKDYYGVTPSHYFEK 236 Y+ SYF FK TP+ Y K Sbjct: 492 YSHPSYFSSKFKSIASSTPASYRRK 516 >UniRef50_UPI0001BC838F helix-turn-helix- domain containing protein AraC type n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC838F Length = 289 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 73/159 (45%), Gaps = 22/159 (13%) Query: 92 FSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER 151 +S+ + IAD L SLL RES + I KI I N ++ Sbjct: 148 YSILYDLSIADEQRLLTSASYDSSLLV----RESRSRRI--------EKICKYIEVNFKK 195 Query: 152 QWHLKDIAELIYTSESLI----KKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVA 207 LK+IAEL+ SES I KKR SF L D R+ YA +L+ + S+ +A Sbjct: 196 DITLKEIAELVNMSESAISHFFKKRT---NRSFITYLTDVRIGYASRLLAETTQSVADIA 252 Query: 208 QKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINK 246 +CG+++ S F FK Y TP+ Y IGV I K Sbjct: 253 FECGFSNLSNFNRIFKKYKNQTPTDY---RIGVHKTITK 288 >UniRef50_Q5QL43 Two-component response regulator n=2 Tax=Geobacillus RepID=Q5QL43_GEOKA Length = 258 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 5/92 (5%) Query: 149 IERQWHLK----DIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSI 203 I+ +HL ++A ++Y S+S + + G +F E L R++ +K L+ +S I Sbjct: 155 IQDNYHLPLTLNEVASMVYLSQSHFSRLFKSATGMTFVEYLTQVRIQKSKYLLKMSSLPI 214 Query: 204 NVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 +V+A K G+++ SYF FK G TP+ Y E Sbjct: 215 DVIAHKTGFSNASYFATTFKRLEGKTPTEYRE 246 >UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SQN1_9FIRM Length = 294 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSN 199 I I N + + DIA SES + ++ G SF L D R+ A +L+++N Sbjct: 196 ILSYIDENYKEAISITDIASYCGFSESHFMRFFKNTMGVSFVSYLNDFRLNVAARLLSTN 255 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 S+ VA+ CG+ + SYF FK YGVTPS Y E Sbjct: 256 DDSVLSVAENCGFFNLSYFNRMFKKKYGVTPSRYRE 291 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 +F KIT ++ + + L +A S + + +RL++E T F +L RM YA L Sbjct: 156 SFEQKITELLQQAPWQDYQLDQVATHFSMSRATLIRRLKEENTQFRTLLTRVRMNYALSL 215 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + +A +CGY S F F +G+TPS Y + + Sbjct: 216 MQQGYRQQMDIAVRCGYQSQERFSQRFYKSFGITPSQYIKTL 257 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L+ +AE + S + + ++ E G SF +L RM A +L+ S I+ +A++ GY+ Sbjct: 314 LESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIRMEKAAELLLSTELPIHEIAERVGYD 373 Query: 214 STSYFICAFKDYYGVTPSHY 233 + YF AFK GV+P+ Y Sbjct: 374 TQHYFSTAFKKAMGVSPNQY 393 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 47/80 (58%) Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 +A+ ++ S+ +++RL++EGTSF +L DTR A++ + ++ A G+ S Sbjct: 254 LAQALHLSQRTLQRRLQEEGTSFQALLDDTRRELAEQYLAQPGMTLLETAYLLGFADPSN 313 Query: 218 FICAFKDYYGVTPSHYFEKI 237 F AF+ ++ VTPS Y ++ Sbjct: 314 FYRAFRRWFDVTPSEYRARL 333 >UniRef50_Q2RVL5 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=Q2RVL5_RHORT Length = 351 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 46/76 (60%) Query: 154 HLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 H++D+AE + + +++RL DEG SF++++ D R AK+ ++ + +AQ GY+ Sbjct: 266 HIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLRRTLAKRYVSQPHVPLADIAQFLGYS 325 Query: 214 STSYFICAFKDYYGVT 229 S F AF ++G++ Sbjct: 326 EPSAFSRAFVRWFGIS 341 >UniRef50_A1ZHS6 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZHS6_9SPHI Length = 282 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 13/146 (8%) Query: 95 FEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI---NTFTCKITGIISFNIER 151 FE A+ + LK + +++L+ + V + +L+N+ +FT +++ N+ Sbjct: 137 FENFDEANQELMALKLKELVTVLSATQHAPEVRA-VLSNLFVPTSFT--FQELVAANLYT 193 Query: 152 QWHLKDIAELIYTSES----LIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVA 207 L+++A+L SES + KK +D S+ LR ++ +++L+T+++ SI + Sbjct: 194 NITLQELAQLASLSESSLKRMFKKVYQDSPASY---LRHQKLLRSQELLTASNLSITQIT 250 Query: 208 QKCGYNSTSYFICAFKDYYGVTPSHY 233 CG+N ++F FK YGV+PS Y Sbjct: 251 LDCGFNDVAHFSKLFKQKYGVSPSAY 276 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 49/83 (59%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L+ +A+ ++ SE +++ L EGT+F E++ + R A++ + S+S SI+ +A G+N Sbjct: 277 LQKVAQTLHLSERSLQRHLSQEGTNFRELVDEVRQEIAERYLKSSSMSISQIAYSLGFND 336 Query: 215 TSYFICAFKDYYGVTPSHYFEKI 237 F AFK ++ +P Y + + Sbjct: 337 AGNFSRAFKRWFSCSPETYRQSL 359 >UniRef50_A0P1V7 Helix-turn-helix, AraC type protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1V7_9RHOB Length = 340 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 49/83 (59%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L+++AE + SE +++RL+ G S+++I+++ R A+ L+ S I VA GY + Sbjct: 254 LREMAEALQISERTLQRRLQHSGRSYSDIVQEARFDLARALLVDPSTRIIDVALAVGYEN 313 Query: 215 TSYFICAFKDYYGVTPSHYFEKI 237 +F AF+ GV+P+ + + I Sbjct: 314 QQHFARAFRRIAGVSPTSFRKSI 336 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 150 ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 +R L+ +A I + S I + ++ E G SF + L R+ A +L+ SIN +A+ Sbjct: 309 DRNLDLRQVAHAIGCNSSYISRIMKQELGISFKDFLTRLRISQAVRLMEDRELSINQIAE 368 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 K GY++ YF AFK+ G++PS + + ++ + Sbjct: 369 KVGYSNQHYFSAAFKNCQGMSPSEFRKNMLQI 400 >UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IVW5_METNO Length = 320 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 G S ILRD RMR A +T+ S ++VVA GY S S F+ AF+ Y V PS Y ++ Sbjct: 251 GRSPMGILRDLRMRQAALDLTTTSAPVDVVAYNAGYESRSSFVRAFRKAYNVDPSEYRQR 310 Query: 237 I 237 + Sbjct: 311 V 311 >UniRef50_B3CBW2 Sensor protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CBW2_9BACE Length = 1319 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Query: 152 QWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 ++ + D+++ + S + ++L+ G S T+ ++ R++ A +L+ N Y+I VA Sbjct: 1228 EYSIADLSKDVMMSRMNLYRKLQAITGQSPTDFVKTIRLKKAAQLLLENRYTIVEVAYTV 1287 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFEK 236 G+N+ SYF FK+ +G+TP+ Y EK Sbjct: 1288 GFNTPSYFTRVFKEQFGITPTQYLEK 1313 >UniRef50_Q1N625 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N625_9GAMM Length = 328 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 156 KDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNST 215 K++AEL + S + + L+ EGTS IL +R+ AK ++ N SI +A K G++ Sbjct: 234 KEVAELFHISSRTLNRHLQQEGTSLKSILTQSRIDEAKTMLEENKQSIEQIAMKIGFSGR 293 Query: 216 SYFICAFKDYYGVTPSHYFEKIIGVTDG 243 F Y G++P+ Y K T+G Sbjct: 294 RTLDRIFIKYVGMSPAQYRSK--SATEG 319 >UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC64_9FIRM Length = 276 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEIL 184 VNS + + +T I N E+ L D+AE + SES I ++++ E G +F +IL Sbjct: 147 VNSLFVQSSGAIKSILTDIAQ-NYEQNISLADLAEKYHFSESYISRKIKKETGYTFVDIL 205 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 R+ A L+ + I+ V +K G+N YF FK +G TPS+Y Sbjct: 206 NGIRLMCAASLLKTGE-KISDVCEKTGFNDQHYFSQLFKKTFGCTPSNY 253 >UniRef50_Q2RW15 Transcriptional regulator, AraC family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RW15_RHORT Length = 347 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 148 NIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVV 206 ++++ W +KD+A + +E+ +K R S L+D RMR A + S+ V Sbjct: 246 DLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLKQGEDSVTGV 305 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 A GY++ ++F F+ Y+GV+PS Y E Sbjct: 306 ALSVGYSNPAHFAKVFRRYFGVSPSRYAE 334 >UniRef50_C0EGI4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGI4_9CLOT Length = 333 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 151 RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 RQ L+ +AE + S S + + R G S+TE+L R++ AK L+ + S + +A Sbjct: 242 RQLSLESLAEAFHYSPSHVSRLFRTRLGKSYTEVLNSLRIQTAKSLLETTSLPMGEIADS 301 Query: 210 CGYNSTSYFICAFKDYYGVTPSHY 233 G N TSY FK YG+TP Y Sbjct: 302 IGVNDTSYLNKIFKKKYGLTPLQY 325 >UniRef50_A6B487 Arabinose operon regulatory protein n=3 Tax=Vibrionaceae RepID=A6B487_VIBPA Length = 279 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 148 NIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVV 206 N+ + + L+DIA+ S S + RDE G + T+ D R+ AK+L+ + +YS+N + Sbjct: 188 NLNQNFTLEDIADFTCLSASRLGHLFRDEVGMTITQWRDDQRISRAKQLLVTTNYSVNHI 247 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + GY YF FK G +P Y E+I Sbjct: 248 GRIVGYTDPLYFSRVFKRKAGASPKLYREQI 278 >UniRef50_D1QQ30 Sensor protein n=1 Tax=Prevotella oris F0302 RepID=D1QQ30_9BACT Length = 634 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 159 AELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 A L + L K+ L G + +E +R+ R+R+A+ L+ + S++ +A + G+N+ YF Sbjct: 554 ASLGMSRVQLYKRLLSVTGLTPSEFIRNIRLRHAEVLLRQSQRSVSEIAYQVGFNNPRYF 613 Query: 219 ICAFKDYYGVTPSHYFEK 236 F D YGVTPS Y ++ Sbjct: 614 SRYFADMYGVTPSQYKQR 631 >UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_9BACE Length = 1344 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 2/104 (1%) Query: 135 NTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYA 192 N F KIT II NIE + + IA+ + S S + ++++ S E +R +MR + Sbjct: 1239 NEFMQKITQIIEENIEMEKMDVAFIADKMCMSHSTLYRKIKGLADMSANEFIRKVKMRKS 1298 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 +++ S Y+I+ ++ G++S +YF FK+ YGV+PS Y ++ Sbjct: 1299 VEMLISGEYTISEISYMTGFSSVAYFRQCFKNEYGVSPSGYVKQ 1342 >UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U8F0_PHYPA Length = 244 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 ++ +A + S+ +++RL +E TSF +L R A++ + S I VA GY Sbjct: 66 IQAVARELGMSDRTLQRRLTEENTSFKHLLTQARHEQAREYLADPSLDIKEVAFLVGYED 125 Query: 215 TSYFICAFKDYYGVTPSHYFEK----IIGVTDGINKTI 248 + F AF+ + G TPSH+ + + G T GI K I Sbjct: 126 QNSFYRAFRLWEGNTPSHWRAEHTALVTGSTKGIGKAI 163 >UniRef50_C5EIB6 Transcriptional regulator n=3 Tax=Clostridiales RepID=C5EIB6_9FIRM Length = 320 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 155 LKDIAELIYTSESLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 LKDIA + I L R+ G SF+EIL RM A L+ +IN +A GY+ Sbjct: 239 LKDIAARFSYHPNYISTLLHRELGKSFSEILLSQRMERAVILLKGTDLTINEIALMLGYS 298 Query: 214 STSYFICAFKDYYGVTPSHY 233 ++S F AF++YYGV+P Y Sbjct: 299 NSSNFYKAFREYYGVSPREY 318 >UniRef50_Q397M3 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=Q397M3_BURS3 Length = 335 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 19/144 (13%) Query: 98 IKIADSHSLWLKERLCISLLAMFKKRESVNS----FILTNINTFTCKITGIISFNIERQW 153 + ++ H+L R+C LA ++++ +S + + F + T Sbjct: 207 LGTSNPHALTEAVRICQDELANQNRQQAFSSRIRRLMFEKVGDFPTQRT----------- 255 Query: 154 HLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 A+L+ + + +RL DEGTS+ EIL R + A + + + S+ +A GY+ Sbjct: 256 ----TAQLLNVTPRTMHRRLADEGTSYREILESVRHKLAIESVKTGKLSLQEIAFLLGYD 311 Query: 214 STSYFICAFKDYYGVTPSHYFEKI 237 S F AF+ + G++PS Y + + Sbjct: 312 SLGNFRRAFRRWEGMSPSEYRQSM 335 >UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4X5_9GAMM Length = 341 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%) Query: 156 KDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNST 215 +++A ++ S + +RL E T ++ R+ YAK+L+ + S I+ VA K GY + Sbjct: 262 EEMALRLFMSSRTLNRRLEKENTHIRLLMDQARLEYAKRLLQTTSLPISTVANKSGYKNP 321 Query: 216 SYFICAFKDYYGVTPSH 232 S F AFK Y+ V+P Sbjct: 322 SSFSRAFKRYFDVSPGQ 338 >UniRef50_A6F8A8 Transcriptional regulator, AraC family n=1 Tax=Moritella sp. PE36 RepID=A6F8A8_9GAMM Length = 345 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 102 DSHSLWLKERLCISLLA---MFKKRESVNSFILTNINTFTCKITGIISFNIER-QWHLKD 157 D + LWL + + +K+ +VN + + T T KI +I +I + L + Sbjct: 193 DVNCLWLNKSVLTQFSVKNLQLEKKMAVN--LALDKMTLTEKIERLIHSSIANSEPTLDE 250 Query: 158 IAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 IA ++ S I + L++EG +F +IL+ R A +T I +++ GY + Sbjct: 251 IAAMLNMSVRSISRSLKEEGLTFRDILKQKRQELAVHYLTKTEDPILTISENLGYKNMGN 310 Query: 218 FICAFKDYYGVTPSHYFEK 236 F AF+ ++ +PSHY EK Sbjct: 311 FTRAFQTWFAQSPSHYREK 329 >UniRef50_D1AE55 Transcriptional regulator, AraC family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AE55_THECD Length = 351 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 159 AELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 AEL T+ +L +RL GTSF + + R A +L+T+ + ++ +A++ GY+ T+ F Sbjct: 267 AELNITTRTL-HRRLERAGTSFRALADEARQELAVELLTTTALTVGEIARRLGYSETAAF 325 Query: 219 ICAFKDYYGVTPSHY 233 AF +GV PS Y Sbjct: 326 THAFTRRHGVPPSRY 340 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 115 SLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 +L +F+ +++N ++TF KI I N + L D+A+ + S K + Sbjct: 407 TLKNLFENIKTINK---EKMDTFIAKIIRFIEDNFNKDITLDDVAKEVNMSYHYFSKFFK 463 Query: 175 DE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 D+ G +F + L + R+ AK+L+ + SI V K GY+ +YF FK G+TP+ Y Sbjct: 464 DQTGKNFIDYLTNLRVTKAKELLEDETVSIKEVCYKVGYSDPNYFSKIFKKATGMTPTEY 523 >UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R353_9RHOB Length = 314 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 150 ERQWHLKDIAELIYTSE-SLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 E+ W + D+AE+ S S + +R G E +RD R+ A+ L+T + S +A Sbjct: 223 EQNWQVTDLAEIAGMSRASFARHFIRHVGKPPMEYVRDWRLMRARSLLTDTNLSSEEIAT 282 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHY 233 +CGYNS F FK +G+ P + Sbjct: 283 RCGYNSLPSFSKLFKKRFGMGPGTF 307 >UniRef50_A4XFU2 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFU2_CALS8 Length = 508 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 145 ISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSI 203 I N Q L DIAE+ S + K ++E G SF + L + R+ AK+L+ S + Sbjct: 413 IERNYANQIFLSDIAEVCGVSPNYFCKIFKEETGKSFVDFLNELRINKAKELLLSTNLKS 472 Query: 204 NVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 VA+K G+N YF FK Y G +PS + E+ Sbjct: 473 YEVAEKVGFNDYKYFSMIFKKYTGTSPSKFKEE 505 >UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firmicutes RepID=A6TTD1_ALKMQ Length = 263 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 Q L+D+A ++ + S + +++ +F+E + R+ AK L+ S +I+ +A + Sbjct: 171 QLSLRDVANHVHLNSSYLSVLFKEQTNLTFSEYMTRRRLENAKNLLMSTDLTIDEIAHEV 230 Query: 211 GYNSTSYFICAFKDYYGVTPSHY 233 GY + YFI FK++ GVTPS + Sbjct: 231 GYQTAKYFIKLFKEFEGVTPSRF 253 >UniRef50_A6GXX7 Probable transcriptional regulator, AraC family n=1 Tax=Flavobacterium psychrophilum JIP02/86 RepID=A6GXX7_FLAPJ Length = 327 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITS 198 ++ II N++ + LK++A L+ T+E +KK + GT+ L + +M A+ L+T Sbjct: 222 QVRDIILDNLKHPFSLKELAHLVGTNEFTLKKGFKTIFGTTVFGFLNNIKMEKAQNLLTE 281 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 +I +A+ GY + ++F AFK YG PS Sbjct: 282 QELTITQIAELVGYKNAAHFTTAFKKKYGTLPS 314 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%) Query: 145 ISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSIN 204 I NIE+ L+ +A + S + +K+RL E SF++IL+ R+ +A + + SI Sbjct: 172 IENNIEKDITLEGLAAHMSMSIATLKRRLAAEDLSFSQILKVKRINFAATQLRMSEKSIT 231 Query: 205 VVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 +A + G+ S ++F AFK Y +TP + +++ Sbjct: 232 EIAFESGFKSAAHFSTAFKSVYNMTPKDFRNQVV 265 >UniRef50_A6D9E4 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D9E4_9VIBR Length = 350 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 E L ++ A + S T+ + ++ ++S + ++ +AE + + + Sbjct: 216 ESLVANIAAKHSAEMNQQSRASTSCDQIRMRLYALLSSGVPT---MEQMAEDLGFTARTL 272 Query: 170 KKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 ++RL DEG ++ +++ D RM+ A + + S S++ +A Y+S FI AFK Y+ V+ Sbjct: 273 RRRLHDEGKTYKQLVLDVRMQMANEYLLKTSLSLSDIANLLDYHSAPPFIRAFKAYHQVS 332 Query: 230 PSHY 233 PS + Sbjct: 333 PSQF 336 >UniRef50_B2TEU0 Transcriptional regulator, AraC family n=3 Tax=Burkholderiales RepID=B2TEU0_BURPP Length = 363 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 148 NIERQWHLKDIAELIYTS-ESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVV 206 N+E ++ IA++I TS +L + + + S E R R+RYA+ ++ + + I + Sbjct: 268 NLEAPLNIAVIAKMIGTSVRNLERAFMSEMNASPNEFYRRMRLRYARWMLVNTARKITDI 327 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPS 231 A +CG+ +++FI AF++ YGVTP Sbjct: 328 AYECGFADSAHFIRAFREAYGVTPG 352 >UniRef50_A9U7E9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7E9_PHYPA Length = 399 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 18/168 (10%) Query: 73 FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE---RLCISLLAM--FKKRESVN 127 FTL +G+ ++E P + + I+ A W+ E R+C K +E+V Sbjct: 242 FTLYDSGHKLDDELPPADLSKELGLIENAQQWKAWVAEKVKRICRRFTPNENLKHKETVE 301 Query: 128 SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRD 186 FI+ I+ + NI HL+D+A+ +Y S++ + R G +F + L Sbjct: 302 -FIIQYIHEHYAE-------NI----HLQDVADQVYISKNYLSTLFRQFTGETFGDYLTR 349 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 RM AK ++ I +A++ GY + YF FK + G +P+ ++ Sbjct: 350 VRMEKAKSMVLEKKLLIAEIAERVGYRNVPYFTTLFKKHTGRSPTEFY 397 >UniRef50_B4SJH0 Transcriptional regulator, AraC family n=4 Tax=Xanthomonadaceae RepID=B4SJH0_STRM5 Length = 396 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 102 DSHSLWLKERLCISLLAMFKK------RESVNSFILT--NINTFTCKITGIISFNIERQW 153 DSH WL RL F + RE ++S + T N ++ + +IE Sbjct: 260 DSH--WLSARL-----PGFDRVNSRIVREQLDSLLPTRGGRNEIVESLSSHLRCDIESTT 312 Query: 154 HLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 ++A LI SE +++RL + +S+ EI + R A+ L+ ++ SI +A GY+ Sbjct: 313 KQSELASLINVSERTLRRRLSRQDSSYREIRDEARYERARDLLLNSELSIAEIADAVGYS 372 Query: 214 STSYFICAFKDYYGVTPSHYFE 235 F AFK + G P+ + E Sbjct: 373 DARAFRRAFKRWAGCLPTEFRE 394 >UniRef50_C0A2N9 AraC-type DNA-binding domain-containing protein-like protein n=2 Tax=Opitutaceae bacterium TAV2 RepID=C0A2N9_9BACT Length = 354 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT-SFTEILRDTRMRYAKKLITSN 199 IT + ++ER +A + SE + + R F E +R R R A++L+ + Sbjct: 251 ITERLQHDLERH----SVASIFRVSEDHLTRLFRTHAHCGFVEFVRAERFRLAERLLADS 306 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTI 248 SI VA CG++ ++YFI F+ +G+TP+ + + G++ G N + Sbjct: 307 RLSIKEVAAACGFSLSAYFIKRFRQQHGLTPAAWRRQQTGMS-GANTLV 354 >UniRef50_UPI00017895F4 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895F4 Length = 754 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 98 IKIADSHSL-WLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLK 156 +K+ +SHSL L++ + L +++ + ++ N N ++ I I IER + Sbjct: 599 VKVDNSHSLEQLRQEIKQVLTEHYEQMKQIH-----NDNQYSSIIRNICDL-IERDYANP 652 Query: 157 DIA-ELIYTSESLIKKRL-----RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 D++ E++ L K + + G F + L D RM+ AK+L+T YS+ +A++ Sbjct: 653 DLSLEMLGDRHQLNAKYVSKLFKENTGQRFVDFLIDIRMKEAKRLLTETDYSVQEIAERV 712 Query: 211 GYNSTSYFICAFKDYYGVTPSHY 233 GY F FK GVTP Y Sbjct: 713 GYAHAISFTRVFKRTAGVTPGEY 735 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMR 190 L + ++ + +I +I+ + E ++ + + SES ++++L+ EG + +I R+ Sbjct: 159 LVHSHSLSNQIHLVIANDQELDVTIESLCQRFAMSESTLRRKLKAEGITLQDIKDQVRLG 218 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTI 248 L+ S SI ++A CGY S S F FK +G+TPS + + V+ G N T+ Sbjct: 219 QGLHLLQSTRKSIGMIANVCGYQSQSRFSERFKYRFGLTPSQLRKTQMAVS-GENLTV 275 >UniRef50_C0EDH7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDH7_9CLOT Length = 331 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 44/73 (60%) Query: 159 AELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 AE Y+S L K + G SFT+IL + ++ AK L+ + ++S + +AQ G++ SY Sbjct: 249 AEFGYSSGYLSKLIRKHTGQSFTDILSNFKLEKAKHLLETTAHSTDEIAQLTGFHDASYL 308 Query: 219 ICAFKDYYGVTPS 231 +F+ YGVTPS Sbjct: 309 SRSFRSKYGVTPS 321 >UniRef50_Q0SR92 DNA-binding response regulator, AraC family n=10 Tax=Clostridium RepID=Q0SR92_CLOPS Length = 507 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 36/58 (62%) Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 ++ G SF+E L T+ AK LI + + IN +A+K GY TSYF FK YYGV PS Sbjct: 442 KEVGCSFSEYLNKTKNMKAKDLILNTNMKINDIAKKVGYLDTSYFYRKFKKYYGVCPS 499 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Query: 130 ILTNINTFTCKITGIISFNIERQWHLKD-IAELIYTSESLIKKRLRDEGTSFTEILRDTR 188 ++ N N+ ++ ++ + R+ D +A + S S +++RL DE TS+ I D R Sbjct: 233 MVENDNSLKSQVMAMLGKDFSREMPSADEVASALNMSVSTLRRRLNDEKTSYQSIKDDCR 292 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 A + + SIN +A G++ S F +FK + G+TP Y Sbjct: 293 KEAAITYMNAPQLSINDIAALMGFDEPSAFFRSFKKWTGMTPGEY 337 >UniRef50_C4G4F0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G4F0_ABIDE Length = 512 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 2/154 (1%) Query: 84 EEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITG 143 EE + L E I + +S ++++ E ++L++ F K+ N I T T KI Sbjct: 355 EEGDKAKYSELMEKIFVGNSENIYIIEEQILTLISEFTKKTESNIGIRRYSET-TTKILS 413 Query: 144 IISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYS 202 I+ N + Q + +++ ++ S + I + D GT+ + + + R+ AK+L+ S S Sbjct: 414 YINDNYKSQAIVSELSSKLFFSRNYISALFKKDTGTTISRYITEVRLCKAKQLLLGTSLS 473 Query: 203 INVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 I+ +A GY S+F FK+ YG +P Y +K Sbjct: 474 ISEIALDTGYFDISHFSRVFKEEYGDSPLEYRKK 507 >UniRef50_C2FW53 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2FW53_9SPHI Length = 326 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 148 NIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVV 206 +I++ + L D+A + T++ L+KK ++ GT+ DT+M A K+I +I+ V Sbjct: 238 HIDQSYSLTDLARRVGTNDFLLKKGFKELFGTTVFGFWNDTKMEQAHKMIRDQHMNISEV 297 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPS 231 A GY + +F AFK +G+ PS Sbjct: 298 ADAVGYKNPQHFTVAFKRRFGIAPS 322 >UniRef50_C6JC89 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC89_9FIRM Length = 537 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 155 LKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 + D+ E + S + I + L+ G SF E L D R + +KLI N Y +A+ GY Sbjct: 454 MDDLTEKFHVSRTYISRLLKKYAGKSFLEYLTDVRFQQVEKLIADNKYKQYEIAEMVGYK 513 Query: 214 STSYFICAFKDYYGVTPSHY 233 Y+I FK YG+TP+ + Sbjct: 514 DFGYYIKVFKKRYGITPNEF 533 >UniRef50_A9KL59 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=A9KL59_CLOPH Length = 259 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 109 KERLCISLLAMFKKRE--SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 KE L IS E + +SFI+ N + I N +++ L ++AE IY S+ Sbjct: 132 KEELLISDTEQQDSPEENTASSFIVKNALQY-------IDENYQQKIMLSEVAEHIYVSQ 184 Query: 167 SLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + K L R G +F+EIL + R+ AK+L+ + + I VA+K G+ ++F FK Sbjct: 185 WHLSKLLHRHTGQNFSEILNNVRIEKAKELLNNPALRIGEVAEKVGFVDMAHFSRVFKKI 244 Query: 226 YGVTPSHY 233 G++ + + Sbjct: 245 VGISANEF 252 >UniRef50_C0YPK7 AraC-type DNA-binding domain-containing protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YPK7_9FLAO Length = 307 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSN 199 + I N+ ++ + IA+L Y S+S K +DE GTS + + R+ AK+L+ S Sbjct: 208 VVDYIKTNLHQKLSIDSIAKLAYVSKSNFFKMFKDELGTSPNDFILQERINRAKELLASQ 267 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + SI A + G++ T+YF FK GVTP Y ++++ Sbjct: 268 T-SIKETAFQTGFSDTNYFTRVFKQLEGVTPKSYQDRMM 305 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 148 NIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVV 206 N ++Q +L D+A+ S S + K+ + G F E L + R++ A +L+ ++SI + Sbjct: 185 NYDKQIYLDDVAKQFSISRSYLSKKFKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDI 244 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPSHY 233 A CG+N ++YF AF+ G++P+ Y Sbjct: 245 AFACGFNDSNYFGDAFRRIKGISPNKY 271 >UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI20_ACIJU Length = 353 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 11/124 (8%) Query: 121 KKRESVNSFI----------LTNINTFTCKITGIISFNIERQW-HLKDIAELIYTSESLI 169 K ++++N F+ N N+ + +I + +W LKDIA+ + S + I Sbjct: 214 KDKQALNEFLKHAPYNLIVRFKNENSLSLQIRRQLILQPPSEWAELKDIAQQMNMSTATI 273 Query: 170 KKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 ++RL+ EG S+ ++ + R A + ++ + SI ++ ++ S F AFK + GV+ Sbjct: 274 QRRLKQEGVSYQQLKNNIRCDIAIERLSKTNDSIQSISDDLNFHDPSAFHRAFKKWSGVS 333 Query: 230 PSHY 233 P Y Sbjct: 334 PGSY 337 >UniRef50_A9DB22 Transcriptional regulator, AraC family protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DB22_9RHIZ Length = 342 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 48/79 (60%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 LKD AE + S +++RL + GTS EI+ D+R A+ L+T + S++ ++ + G+++ Sbjct: 256 LKDEAERLGMSARTLQRRLTEAGTSMQEIIDDSRKEMAQNLLTETTLSLSEISFQLGFSA 315 Query: 215 TSYFICAFKDYYGVTPSHY 233 + F + ++G TPS Y Sbjct: 316 PAAFTRSAIRWFGKTPSAY 334 >UniRef50_Q64PI8 Transcriptional regulator n=1 Tax=Bacteroides fragilis RepID=Q64PI8_BACFR Length = 607 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 156 KDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS-NSYSINVVAQKCGYN 213 K + E ++ SL +++ G SF+E + RM YA KL+T Y+I+ +A+ CG + Sbjct: 514 KTLQEELHVPASLFGTHFKEQTGHSFSEHINKLRMDYAAKLLTEYPQYTIDAIAKMCGID 573 Query: 214 STSYFICAFKDYYGVTPS 231 S +F F +Y+G+TPS Sbjct: 574 SRQHFHRLFSEYFGITPS 591 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 131 LTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRM 189 L + T ++ II+ ++ R+ L + A+ + SE +++RL+ EG F ++L +TR Sbjct: 229 LVGATSLTERVKQIITPMLQGREVGLTETAKQLGLSEWTLQRRLKKEGVQFQQVLDETRK 288 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK-IIGVTD 242 + A+ + + +I +A G++S + F AFK ++GV P + ++ G TD Sbjct: 289 QIAETYLKATDLTIGEIAYLLGFSSPAAFHRAFKRWFGVNPKPFKDQHASGRTD 342 >UniRef50_D0IBR3 Signal transduction histidine kinase n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IBR3_VIBHO Length = 935 Score = 54.3 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 158 IAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 +A+ + SE +++R + E G +F E L TR+ AK+++ I VA CG+N S Sbjct: 846 LAKAMCVSERSLQRRFKLEFGITFKEALITTRLENAKRMLCQGD-KITDVAVACGFNEPS 904 Query: 217 YFICAFKDYYGVTPSHYFEK 236 YF +FK YG TPS + E+ Sbjct: 905 YFTKSFKAKYGKTPSQFREE 924 >UniRef50_D1PCS5 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCS5_9BACT Length = 1378 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%) Query: 167 SLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 L K+ + G + +E LR R+++A+ L+ S +I+ +A K G+N+ YF F+D Y Sbjct: 1304 QLYKRMISLTGITPSEYLRTKRIKFAEHLLRSGDLNISEIAYKVGFNNPRYFTKYFQDTY 1363 Query: 227 GVTPSHY 233 GVTPS Y Sbjct: 1364 GVTPSQY 1370 >UniRef50_A9F3N3 Probable transcriptional regulator n=1 Tax=Phaeobacter gallaeciensis 2.10 RepID=A9F3N3_9RHOB Length = 350 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 49/79 (62%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 ++ ++ L++ S + +K+RL+ E SF +I R K+ + S+ +++V+A++ GY++ Sbjct: 266 VESVSALLHVSPATLKRRLKSENASFLDIKNSERFELVKRRLRSSDVTLSVIAEEAGYDN 325 Query: 215 TSYFICAFKDYYGVTPSHY 233 S AFK ++G++P + Sbjct: 326 PSNLSKAFKQHFGLSPGAF 344 >UniRef50_C9P3F6 Signal transduction histidine kinase n=2 Tax=Vibrio RepID=C9P3F6_VIBME Length = 1106 Score = 54.3 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 157 DIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNST 215 DIA+ +Y SE +++R++ G +F E L + R+ A L+ S + VA CG+N Sbjct: 1025 DIAKRMYLSERSLQRRMKYLTGKTFKEYLTEYRLEQACSLLMSGE-KVAQVAFLCGFNDP 1083 Query: 216 SYFICAFKDYYGVTPSHYFEK 236 SYF FK YG++PS + E+ Sbjct: 1084 SYFSQRFKHQYGLSPSQFAEE 1104 >UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like protein n=2 Tax=Vibrio fischeri RepID=Q5DYZ5_VIBF1 Length = 261 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 51/103 (49%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 ++ K++ S + + L +++ S + + +RL +GT+F +L + RM +A Sbjct: 157 DSLQNKLSAYFSKDPAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALS 216 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 L+ S +A +CGY S + F F +G+TP Y + + Sbjct: 217 LMQERKQSQLDLALQCGYQSETRFSQRFHQQFGITPKQYMKTV 259 >UniRef50_UPI0001C365B5 response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C365B5 Length = 347 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 20/149 (13%) Query: 93 SLFEGIKIADSHSLWLK------ERLCISLLAMFKKRESVN-SFILTNINTFTCKITGII 145 +L+ ++ DS + W RL +S+ RE N S I+T+ + + Sbjct: 206 NLYHFTQVPDSEAEWSAFLMGYYNRLHLSV-----AREHQNYSLIITHALQY-------L 253 Query: 146 SFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSIN 204 + +++ L ++A+++ + S + ++ E G +F +I+ + R+ +AKKL+ + S+ IN Sbjct: 254 ESHYQQELSLSEVAKVVSVNPSYLSSLIKKETGKNFIDIIIEARLEHAKKLLQNPSHRIN 313 Query: 205 VVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 VA G+ +YF FK + G++P Y Sbjct: 314 EVADLSGFKDYAYFYQTFKKHVGLSPKEY 342 >UniRef50_C6D143 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D143_PAESJ Length = 536 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 116 LLAMFKKR--ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 LLA + +R ++ L + +++ I + W +K +AE + S + Sbjct: 406 LLAGYVQRYMDTEQKAQLNQQHNLIRRVSLFIEERLHEHWTVKQLAEHFNLNASYLSVLF 465 Query: 174 RDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + E G + +E ++DTR+ A+KL+ + + VA++ G +T+YF FK GVTP Sbjct: 466 KREMGRTISEFVQDTRIERARKLLQDPNIKVYEVAEQVGIQTTAYFTYLFKKLVGVTPQE 525 Query: 233 Y 233 Y Sbjct: 526 Y 526 >UniRef50_Q8RSF6 Putative transcriptional regulator protein n=2 Tax=Bacteria RepID=Q8RSF6_WOLSU Length = 333 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 114 ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKR 172 I++L FK + + + +++ ++T I+S I + +KD+A+ + + ++ R Sbjct: 209 IAMLEFFKMQ--ADRILDEEEESYSIRVTRILSEMIHYKAPEVKDVAKRLEITPRTLQNR 266 Query: 173 LRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 L+ EGT+F E++ T+ + A + + +I VA++ GY+ TS F AFK + TP Sbjct: 267 LKVEGTTFQELIISTKKQLACHYLKTKEINIQEVAERLGYSETSAFNRAFKQWTNFTPRE 326 Query: 233 Y 233 + Sbjct: 327 F 327 >UniRef50_C9A684 Predicted protein n=1 Tax=Enterococcus casseliflavus EC20 RepID=C9A684_ENTCA Length = 713 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 7/100 (7%) Query: 138 TCKITGIISFNIERQWHLKDIAELIYTSES----LIKKRLRDEGTSFTEILRDTRMRYAK 193 T +I I+ N L DIA+ + SE+ LIK+RL SF + R+ AK Sbjct: 611 TDEIIQFINSNYCSDLSLTDIAQQFHLSEAYLSRLIKERL---SMSFKPYVNQLRVEKAK 667 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 +L++ SIN +A K G+ +T+ FI FK + G TP Y Sbjct: 668 RLMSEQESSINEIASKVGFKNTNSFIRVFKQFEGTTPGTY 707 >UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0J9_9BACE Length = 425 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 123 RESVNSFI------LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 RE V F+ L +++ T + I+ + + L+D+A ++ +ES + K R E Sbjct: 296 RELVAHFVDDIFADLPQVSSATTRAVSYINAHYMDKLTLRDLASALFLNESSLSKLFRQE 355 Query: 177 -GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 GTSFT+ L R+ ++ +L+ + S+ ++ G++ SYF FK G TP Y Sbjct: 356 LGTSFTDYLNRIRIEHSTELMRNTDRSLLEISGLVGFDDQSYFTKIFKKVTGTTPRQY 413 >UniRef50_D1PKE0 Transcriptional regulator, AraC/XylS family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKE0_9FIRM Length = 324 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 151 RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 R L +AE + S + +R G +F E+L+ R+ A++L+ + + +A+ Sbjct: 232 RDASLSHVAERFHVSLPYLSALIRQATGNTFKELLQQKRLDRAQQLLRTTRLPVQAIAES 291 Query: 210 CGYNSTSYFICAFKDYYGVTPSHYFEKI 237 GY++TSYF +K +G+TP Y + + Sbjct: 292 VGYDTTSYFYGIYKKAFGITPKEYRDHL 319 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 145 ISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSI 203 +S N+ ++ L+++A ++ + S + + E G +F E + D ++ AK+L+ +Y + Sbjct: 442 VSMNLGKRISLEEVAAHLHMNPSYFSRFFKKETGLTFIEYVTDQKIERAKELLDQTNYYV 501 Query: 204 NVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + + + GY++ SYFI FK G+TP+ Y Sbjct: 502 SEICEMLGYDNQSYFIKTFKAQTGLTPTEY 531 >UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Proteobacteria RepID=A9AQB1_BURM1 Length = 317 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 148 NIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVV 206 N R W L ++A+L S + + D+ G S TE+L D RM A + + S V Sbjct: 223 NPARPWSLPELADLCNMSRATFMRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAV 282 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 A+ GY S + F F D G+TP + + Sbjct: 283 AESIGYRSVAAFRRMFTDKMGMTPGQWRRR 312 >UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID=D2EZ28_9BACE Length = 1354 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 135 NTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYA 192 N F +IT II N+E + + IA+ + S S + ++++ S E +R +M+ Sbjct: 1250 NEFVQRITQIIEDNLEMEKMDIAFIADQMCMSHSTLYRKIKGVADMSANEFIRKVKMKNG 1309 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 KL+ S YSI+ ++ G++S +YF FK+ +G+TPS Y ++ Sbjct: 1310 VKLLLSGKYSISEISYMTGFSSVAYFRQCFKNEFGMTPSEYVKQ 1353 >UniRef50_UPI0001788C36 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C36 Length = 254 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTS-FTEILRDTRMRYAKKLITS 198 K+ I+ N + L+ +AE+++ + S + + + EG ++ + +TR+R A KL+ + Sbjct: 154 KLKAHIAENPDGDLRLQTLAEMVHLNPSYLSQLFKQEGGGNLSDYIAETRIRRACKLLET 213 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + + +A+ GY S +F+ FK + G+TP Y E Sbjct: 214 TNLKVYDIARLSGYQSPKHFMLVFKQHTGMTPGTYRE 250 >UniRef50_A3K7U5 Putative uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7U5_9RHOB Length = 379 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 48/76 (63%) Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L+ +A+++ + ++++L GTSF+EIL R+R A+ L+++ S ++ +A GY + Sbjct: 276 LETLADILGMAPRTLRRQLGTFGTSFSEILNRERLRKAEMLLSTGSIKVSQLAAHLGYAN 335 Query: 215 TSYFICAFKDYYGVTP 230 S F AF+++ G TP Sbjct: 336 QSAFSRAFREWTGETP 351 >UniRef50_A6LXV6 Xylan 1,4-beta-xylosidase n=2 Tax=Clostridium RepID=A6LXV6_CLOB8 Length = 841 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 7/137 (5%) Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGI---ISFNIERQWHLKDIAELIYTSESLIKKR 172 L + FK +S NS T+IN + +I I IS N + L +++ Y S I K Sbjct: 149 LTSTFKVEDSANS---TDINKNSERIKNILHYISENYRNKISLNSLSDEFYLSMPYISKI 205 Query: 173 LRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 +D G SF++ L + R+ +A K +T + +I +A+K G+++T F+ +FK Y PS Sbjct: 206 FKDFIGISFSDYLIEIRLSHAMKDLTDPNLTIEYIAEKNGFSNTRSFVSSFKSKYFCLPS 265 Query: 232 HYFEKIIGVTDGINKTI 248 Y + + G K I Sbjct: 266 SYRKNMDAYDLGTKKKI 282 >UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2BXH0_LISGR Length = 495 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSN 199 + II ++Q +LKD+A ++ + + + + E SF++ L R++ A+ + Sbjct: 390 VLAIIHNEYDQQLNLKDVANRLHMNTMYVGQLFKKETNKSFSQYLHQYRIKKAQNFLVDT 449 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 S +IN +A K GY S YF +FK G++P + E+ Sbjct: 450 SDTINEIADKTGYTSAGYFYKSFKKICGISPKEFREQ 486 >UniRef50_B3C9G8 Sensor protein n=2 Tax=Bacteroides RepID=B3C9G8_9BACE Length = 1288 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 117 LAMFKKRESVNSFILTNI--NTFTCKITGIISFNIER-QWHLKDIAELIYTSESLIKKRL 173 L + K IL N + F K +I N++ + + A ++ S SL+ K++ Sbjct: 1168 LKLIKPENDEQQVILANELNDQFVKKAVEVIHNNMQNLDFDKESFAMEMHVSGSLLYKKI 1227 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + G S E ++ R+ A +L+ S+ Y+I V++ CGY+S SYF FK Y+G +P+ Sbjct: 1228 KALTGQSPIEFIKSIRLNRALELLQSHKYTITEVSELCGYSSISYFSTVFKKYFGKSPTE 1287 >UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HU78_ACIBC Length = 342 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Query: 152 QW-HLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 +W LKD+A+ + SE+ +++RL+ EG S+ +I + R A + ++ ++ SI +++ Sbjct: 251 EWPELKDVAQQLNISEATVQRRLKHEGVSYQQIKNEIRCDIAIERLSKSNDSIQDISEDL 310 Query: 211 GYNSTSYFICAFKDYYGVTPSHY 233 ++ S F AFK + GV+P Y Sbjct: 311 NFHDPSAFHRAFKKWTGVSPGAY 333 >UniRef50_B8I997 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I997_CLOCE Length = 542 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 36/64 (56%) Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 RD G + E L + R++ AK+L S + I VA K GY SYF FK YYG+ PS + Sbjct: 476 RDTGFTINEYLTEFRIKKAKELFDSGNTLILDVASKVGYADASYFGKCFKKYYGLAPSKF 535 Query: 234 FEKI 237 E I Sbjct: 536 IENI 539 >UniRef50_B0MFL4 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFL4_9FIRM Length = 531 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 133 NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRY 191 N T T + I + + Q L+++A+ + + + + + E G F+ L + R+ Y Sbjct: 426 NAGTQTRQAVQYIREHFKEQIGLQEVADAVGLNFAYLSYLFKQEMGIGFSGFLLELRVEY 485 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 AK L+ + SY I VA + G+N YF AFK GV+P+ Y K Sbjct: 486 AKDLLKNTSYKIKDVAVESGFNDYHYFSKAFKRLNGVSPAEYRRK 530 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 K+ G I N + ++ +AE+ + S + K + E G SF L R+ AKKL+ + Sbjct: 399 KLCGYIGKNYRQPLKIETLAEVFGYNGSYLGKLFKQETGESFHSYLDRVRIEKAKKLLET 458 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++ I VA +CG+ S YF FK Y GV+P Y Sbjct: 459 DA-RIYSVASECGFQSNEYFSNKFKKYVGVSPQAY 492 >UniRef50_C9PH45 AraC-type DNA-binding domain-containing protein n=2 Tax=Vibrio RepID=C9PH45_VIBFU Length = 282 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQ----WHLKDIAELIYTSESLIKKRLR 174 M + V S + NI+ ++ +++ ++E Q W + IAEL + SE + + ++ Sbjct: 154 MLSELAKVLSSVTANISDTHMRVLSVLN-SVESQLHLDWKVSTIAELTFLSEEQLNRVVK 212 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 G S + L RM+ A L++ +SI ++A + GY + F FK ++G P+HY Sbjct: 213 QLVGMSPRDYLLTLRMKKATDLLSHKDWSIAMIALRLGYKDPNNFTHRFKKHFGKPPTHY 272 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 320 3e-86 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 207 3e-52 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 198 2e-49 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 196 6e-49 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 195 1e-48 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 184 2e-45 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 183 6e-45 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 170 4e-41 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 152 1e-35 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 145 2e-33 UniRef50_Q5WL40 AraC/XylS family transcriptional regulator n=1 T... 143 4e-33 UniRef50_B1XRM7 Transcriptional regulator, AraC family n=1 Tax=S... 143 5e-33 UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=C... 142 1e-32 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 141 3e-32 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 140 4e-32 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 140 6e-32 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 139 1e-31 UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bactero... 136 5e-31 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 135 1e-30 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 134 3e-30 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 134 3e-30 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 133 5e-30 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 133 7e-30 UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Bu... 133 7e-30 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 133 7e-30 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 132 1e-29 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 132 1e-29 UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecali... 131 3e-29 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 131 3e-29 UniRef50_A9U7E9 Predicted protein n=1 Tax=Physcomitrella patens ... 131 3e-29 UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=B... 130 3e-29 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 130 4e-29 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 130 5e-29 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 130 6e-29 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 129 7e-29 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 129 1e-28 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 129 1e-28 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 128 1e-28 UniRef50_C0Z962 Probable two-component response regulator n=1 Ta... 128 1e-28 UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=A... 128 1e-28 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 128 1e-28 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 128 1e-28 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 128 2e-28 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 128 2e-28 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 127 3e-28 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 127 3e-28 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 127 3e-28 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 127 4e-28 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 127 4e-28 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 126 4e-28 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 126 5e-28 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 126 5e-28 UniRef50_C6D127 Two component transcriptional regulator, AraC fa... 126 7e-28 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 126 8e-28 UniRef50_UPI0001BC838F helix-turn-helix- domain containing prote... 126 8e-28 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 126 9e-28 UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bactero... 126 9e-28 UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicu... 126 1e-27 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 125 1e-27 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 125 1e-27 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 125 1e-27 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 125 1e-27 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 125 2e-27 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 125 2e-27 UniRef50_B0S295 Transcriptional regulator AraC family n=2 Tax=Fi... 124 2e-27 UniRef50_C5EUD7 Putative uncharacterized protein n=1 Tax=Clostri... 124 2e-27 UniRef50_C6D8S9 Two component transcriptional regulator, AraC fa... 124 2e-27 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 124 2e-27 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 124 3e-27 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 124 3e-27 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 124 3e-27 UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=En... 124 4e-27 UniRef50_C6J0N4 Response regulator n=1 Tax=Paenibacillus sp. ora... 123 5e-27 UniRef50_A0AHT2 Complete genome n=15 Tax=Listeria RepID=A0AHT2_L... 123 5e-27 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 123 5e-27 UniRef50_C6CVB2 Two component transcriptional regulator, AraC fa... 123 5e-27 UniRef50_UPI0001789612 two component transcriptional regulator, ... 123 7e-27 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 123 7e-27 UniRef50_C6CUY4 Two component transcriptional regulator, AraC fa... 123 7e-27 UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_... 122 8e-27 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 122 8e-27 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 122 9e-27 UniRef50_UPI0001851370 two component AraC family transcriptional... 122 9e-27 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 122 1e-26 UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=P... 122 1e-26 UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostri... 122 1e-26 UniRef50_UPI0001788C36 two component transcriptional regulator, ... 122 1e-26 UniRef50_C9BRE3 AraC family DNA-binding response regulator n=5 T... 122 1e-26 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 122 1e-26 UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_... 121 1e-26 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 121 2e-26 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 121 2e-26 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 121 2e-26 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 121 2e-26 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 121 2e-26 UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 ... 121 2e-26 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 121 2e-26 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 121 2e-26 UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostri... 121 2e-26 UniRef50_C4G4F0 Putative uncharacterized protein n=1 Tax=Abiotro... 121 3e-26 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 120 3e-26 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 120 3e-26 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 120 3e-26 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 120 4e-26 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 120 4e-26 UniRef50_C4L2Y3 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 120 4e-26 UniRef50_UPI0001C3522D two-component system, response regulator ... 120 4e-26 UniRef50_C0FZV1 Putative uncharacterized protein n=1 Tax=Rosebur... 120 4e-26 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 120 5e-26 UniRef50_C9A6S2 Response regulator receiver n=5 Tax=Bacteria Rep... 120 5e-26 UniRef50_C6CZ56 Two component transcriptional regulator, AraC fa... 120 5e-26 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 120 5e-26 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 120 5e-26 UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostri... 120 5e-26 UniRef50_Q0ST06 Transcriptional regulator, AraC family n=13 Tax=... 120 6e-26 UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 120 6e-26 UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=P... 120 6e-26 UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillu... 120 7e-26 UniRef50_C0EDG6 Putative uncharacterized protein (Fragment) n=1 ... 119 7e-26 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 119 9e-26 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 119 9e-26 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 119 9e-26 UniRef50_UPI0001C365B5 response regulator receiver protein n=1 T... 119 9e-26 UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Pae... 119 9e-26 UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotro... 119 1e-25 UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_... 119 1e-25 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 119 1e-25 UniRef50_Q9KDT8 BH1123 protein n=1 Tax=Bacillus halodurans RepID... 119 1e-25 UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=m... 119 1e-25 UniRef50_C6D143 Two component transcriptional regulator, AraC fa... 118 1e-25 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 118 1e-25 UniRef50_C6CXK7 Two component transcriptional regulator, AraC fa... 118 1e-25 UniRef50_B8I0Y2 Two component transcriptional regulator, AraC fa... 118 1e-25 UniRef50_UPI0001C35655 two-component response regulator n=1 Tax=... 118 2e-25 UniRef50_C8ZXM2 DNA binding response regulator n=4 Tax=Enterococ... 118 2e-25 UniRef50_C0D0A3 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_A7JVV0 Possible AraC family transcriptional regulator n... 118 2e-25 Sequences not found previously or not previously below threshold: UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 135 9e-31 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 130 4e-29 UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=R... 129 8e-29 UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Cl... 128 2e-28 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 127 3e-28 UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing... 127 3e-28 UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteri... 126 4e-28 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 126 4e-28 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 126 5e-28 UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=C... 126 6e-28 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 125 1e-27 UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerot... 125 1e-27 UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=... 125 1e-27 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 125 1e-27 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 125 2e-27 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 125 2e-27 UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostri... 125 2e-27 UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=... 124 2e-27 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 124 2e-27 UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=... 124 3e-27 UniRef50_UPI0001B9ECE6 two component transcriptional regulator, ... 124 3e-27 UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=C... 124 3e-27 UniRef50_C6D8V3 Transcriptional regulator, AraC family n=1 Tax=P... 124 3e-27 UniRef50_C6CSY2 Two component transcriptional regulator, AraC fa... 124 3e-27 UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 123 4e-27 UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 T... 123 4e-27 UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicu... 123 5e-27 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 123 5e-27 UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=P... 123 5e-27 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 123 6e-27 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 123 6e-27 UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=... 123 6e-27 UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostri... 123 6e-27 UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1... 123 6e-27 UniRef50_B9MLQ2 Two component transcriptional regulator, AraC fa... 123 6e-27 UniRef50_UPI0001C36936 two component transcriptional regulator, ... 123 7e-27 UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=M... 123 7e-27 UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Ta... 123 7e-27 UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 T... 123 8e-27 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 123 8e-27 UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=C... 123 8e-27 UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Rum... 123 8e-27 UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=C... 122 1e-26 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacte... 122 1e-26 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 122 1e-26 UniRef50_Q476C1 Transcriptional regulator, AraC family n=1 Tax=R... 122 1e-26 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 122 1e-26 UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecali... 122 1e-26 UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales ... 121 1e-26 UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coproco... 121 2e-26 UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=A... 121 2e-26 UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 T... 121 2e-26 UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=C... 121 2e-26 UniRef50_C3RI67 Transcriptional regulator n=2 Tax=Bacteria RepID... 121 2e-26 UniRef50_UPI0001789626 transcriptional regulator, AraC family n=... 121 2e-26 UniRef50_P77396 Uncharacterized HTH-type transcriptional regulat... 121 2e-26 UniRef50_C2L0L9 Response regulator receiver protein n=2 Tax=Lach... 121 2e-26 UniRef50_A1HM14 Two component transcriptional regulator, AraC fa... 121 3e-26 UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostri... 121 3e-26 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 121 3e-26 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 120 3e-26 UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecali... 120 3e-26 UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and... 120 4e-26 UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=V... 120 4e-26 UniRef50_C6IZZ6 Transcriptional regulator n=2 Tax=Paenibacillus ... 120 4e-26 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 120 4e-26 UniRef50_A4XMF1 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 120 4e-26 UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryan... 120 4e-26 UniRef50_UPI0001C3678C two component transcriptional regulator, ... 120 4e-26 UniRef50_UPI00017895AE two component transcriptional regulator, ... 120 5e-26 UniRef50_UPI0001789951 two component transcriptional regulator, ... 120 5e-26 UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostri... 120 5e-26 UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=... 120 5e-26 UniRef50_A4XMI3 Two component transcriptional regulator, AraC fa... 120 6e-26 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 120 6e-26 UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 T... 120 6e-26 UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1... 120 7e-26 UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=K... 120 7e-26 UniRef50_A6CWX4 Transcriptional regulator, AraC family protein n... 120 7e-26 UniRef50_B4WW69 Transcriptional regulator, AraC family protein n... 119 7e-26 UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=... 119 8e-26 UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=C... 119 8e-26 UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=P... 119 8e-26 UniRef50_O31522 HTH-type transcriptional regulator yesS n=2 Tax=... 119 8e-26 UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryante... 119 8e-26 UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostri... 119 9e-26 UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=D... 119 9e-26 UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC... 119 9e-26 UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7... 119 9e-26 UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. ora... 119 9e-26 UniRef50_C6IXH5 Response regulator n=1 Tax=Paenibacillus sp. ora... 119 1e-25 UniRef50_C1DC70 Transcriptional regulator, AraC family protein n... 119 1e-25 UniRef50_C6CWB0 Two component transcriptional regulator, AraC fa... 119 1e-25 UniRef50_C6CVW8 Two component transcriptional regulator, AraC fa... 119 1e-25 UniRef50_UPI000178A7F3 two component transcriptional regulator, ... 118 1e-25 UniRef50_UPI0001C36195 two component transcriptional regulator, ... 118 1e-25 UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Ta... 118 1e-25 UniRef50_UPI0001789620 two component transcriptional regulator, ... 118 1e-25 UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=B... 118 1e-25 UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminoc... 118 2e-25 UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_Q65KY8 Probable transcriptional regulator n=1 Tax=Bacil... 118 2e-25 UniRef50_C6D1V9 Transcriptional regulator, AraC family n=1 Tax=P... 118 2e-25 UniRef50_UPI0001787F16 transcriptional regulator, AraC family n=... 118 2e-25 UniRef50_C6CTL6 Two component transcriptional regulator, AraC fa... 118 2e-25 UniRef50_C0FTY3 Putative uncharacterized protein n=1 Tax=Rosebur... 118 2e-25 UniRef50_A8RMQ2 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=... 118 2e-25 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 320 bits (820), Expect = 3e-86, Method: Composition-based stats. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF Sbjct: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF Sbjct: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV Sbjct: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 Query: 241 TDGINKTID 249 TDGINKTID Sbjct: 241 TDGINKTID 249 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 143/233 (61%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M +VCSVV +C+S D+ ++ ++ K+SL ++ +K+ +P S +R ++ID+ + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + + + ++ + +PPL LV ++F+ A++ + L L S L++F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + + + +INT + K+ IIS + R+W+L+D+AE +YTSESLIKK+L+DE TSF Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++IL +RM AK L+ N + V+A+KCGY+STSYFI F+ YYGVTP Y Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQY 233 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 1/237 (0%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M Y+CS++ + SF + I + I FKK + ++ ++ L IVD+++KT Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 FF + P Y+ E SL+ +L + ++ ++ ++ LA+ Sbjct: 61 FFKNY-TLSPFSVRRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVL 119 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + V SF+ ++N+ CK+ II +I W L DI+ +Y SESL+K++L+DEG SF Sbjct: 120 SSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSF 179 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 ++++ + RM A++L+ +++++ VA CGY++ SYF+ F+ Y+GV P Y + Sbjct: 180 SKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSRF 236 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 1/236 (0%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M CSV+ I +SFD+ + + ++ S +V R P ++ + D + S Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFI-S 62 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 ++ NN + Y+ SL+ L + E + + L+ F Sbjct: 63 RYLKANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAF 122 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + F+ + + K+ II ++ W LKDI+ +Y SESL+K++L++EG SF Sbjct: 123 SSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSF 182 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 ++I+ D RM+ A+ L+++ Y I+ VA+ CGY S SYF F+ Y+GV+PS Y ++ Sbjct: 183 SKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQR 238 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 195 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 83/239 (34%), Positives = 141/239 (58%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M +VCSV+ I +SFD+ ++ IS S+ ++ + + C R +DID+ T Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + ++ K+ + + PP+ LV ++F+ + +S L L +S L+MF Sbjct: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 ++ + + +I+T + K+ +ISF+I ++W+L+DIAE +YTSESLIKK+L+DE T F Sbjct: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 ++IL +RM A++L+ ++ +A+KCGY+STSYFI F+ YYGVTP + + G Sbjct: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 10/249 (4%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M VCSV+FI +F+ I + +F + +V + +R + + ++ T Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 FFIDVNNELPGKFTLDKNG-YIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + N + T+ ++ P L+ + + + + E L S L++ Sbjct: 61 YLQCTNIQT---VTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTS 179 F + + + + + + K+ I++ + W LKDI + +Y SESL+KK+L+ E T+ Sbjct: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTT 177 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP----SHYF- 234 F++IL D RM++AK LI S+N +A++CGY STSYFI AF+ ++G +P Y Sbjct: 178 FSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 Query: 235 EKIIGVTDG 243 ++ G+ G Sbjct: 237 QRHTGMNTG 245 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 183 bits (464), Expect = 6e-45, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 4/236 (1%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M VCSV+ +C ++ + + +S K S+ + + IR + K++I DI+ S Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIV-S 59 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 ++++ ++L D Y++ E +L +L + + + L ++ L++F Sbjct: 60 QYLEIQHKLTRTHLTDVPLYLSLEPNNPALAEALITSQRFSGDTTDMF---LMMACLSLF 116 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + E + F+ +++ + K+ II +I W L IA ++ SESL+K +L++EG F Sbjct: 117 ESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHMF 176 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + +L + RMR A ++ S VA+KCGY+S SYFI F YYG P Y + Sbjct: 177 SRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYVSR 232 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 VC V+ + + F+ I + + F+KN + + + + P + + ID+ ++ Sbjct: 3 VCYVILVNRPFETEIAGKKLFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRK-YM 61 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 + + + + +I ++L+ ++ + + + + E++ + L++F Sbjct: 62 ESADRIQHSDSAVSVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFACLSIFSTH 121 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEI 183 + IN+ K+ II + R W +KDI+ +Y SESL+K++L++E SF++I Sbjct: 122 RGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKVSFSQI 181 Query: 184 LRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 L D RM A++LI S+ S+N +A +CGY ST YFI F++Y+G+TP Sbjct: 182 LLDIRMHNARQLI-SSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQ 229 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 2/235 (0%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M VC + I + + + + + ++ R L K +++++ T + Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRN 66 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + N+ +F + + L+ S+ + I + K+ + SLL++F Sbjct: 67 YLSYYNHCEK-QFLETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFKDAIFFSLLSVF 125 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 ++ +F+ + + TF+ K+ I ++ + W L+D+A+ +Y SESLIKK+L E TSF Sbjct: 126 SDVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLLLENTSF 185 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 ++IL DTRM A KL+ ++ I V++ CG++STSYF+C F+ YY TP Y + Sbjct: 186 SKILLDTRMSLAIKLLKQ-NHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYLK 239 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 20/228 (8%) Query: 25 FKKNSLFIVSDKIR-----RELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNG 79 K+ S IV + R ++L V P+ + + I++ F D+ + P T K Sbjct: 37 VKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCSDLLSLTPELLTRFKTR 96 Query: 80 YIAEEEPPLSLVFSLFEGIKIA-------------DSHSLWLKERLCISLLAMFKKRESV 126 Y++ EPP + SL + + S+ L++ + LL + Sbjct: 97 YLS--EPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLLALYEAGYA 154 Query: 127 NSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRD 186 ++ + ++ +I + + W + +A++++ ES +++RL+ E SF +I+ + Sbjct: 155 GPLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEE 214 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 RM +A + + S I +AQ GY S S F F+ +YG+ P H Sbjct: 215 VRMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLPKHVR 262 >UniRef50_Q5WL40 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL40_BACSK Length = 323 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 107/259 (41%), Gaps = 24/259 (9%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCL-- 59 DY+ S I R + +K L +++ I E+ C ++ I++ + Sbjct: 66 DYIEMNYVYNGSLKQTIGDRAVELQKGELVVLNQHIEHEIEACGTEDIIINFIIQPSFFN 125 Query: 60 -------------SFFID--VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSH 104 SF ID +E G+F K A+E L+ + E + D++ Sbjct: 126 YIFSFLNVEGPFYSFLIDSIHGSEPLGQFLYFK---CAKEASVQQLLRKMVEEMMEPDAY 182 Query: 105 SLWLKERLCISLLAMFKKRESV--NSFILTNINTFTCKITGIISFNIERQWHLKDIAELI 162 S + L+ K+ + L+ N + + I + L ++A+ + Sbjct: 183 SQASIKLYVGMLMIELAKKANTLDGKQKLSLHNQWIRQTFAYIDEQY-KHASLYELAKRL 241 Query: 163 YTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICA 221 L+ K ++ G +F +L++ R+ AK+L+ + ++V+AQ+ GY++ SYF Sbjct: 242 NQPHYLLSKVIKKQTGKTFKALLQERRLDIAKELLVQSDLPVSVIAQEIGYDNFSYFYQI 301 Query: 222 FKDYYGVTPSHYFEKIIGV 240 FK ++ TP Y +K Sbjct: 302 FKKHFHTTPLVYRKKHASS 320 >UniRef50_B1XRM7 Transcriptional regulator, AraC family n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XRM7_SYNP2 Length = 342 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 27/248 (10%) Query: 19 NRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKN 78 N R ++ K N +F+++D +E+ P + +I+ I + F +N+ + Sbjct: 98 NHRHLNIKSNQMFLMADT--KEIDEIPGQEQIISIKLQIEPCFLQSFSNQPTYQLPSPLQ 155 Query: 79 GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLC--ISLLAMFKKRESVNSFILTNINT 136 +I ++ ++ L GI ++ + + C L+A V + + Sbjct: 156 RWIDQK----TVAPFLTTGITTSNMQVILKQILSCPYQGLMAQMYLESKVLELFVLQLEQ 211 Query: 137 FTCK------------------ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EG 177 FT K I+ N + L D+A + ++ +K+ R G Sbjct: 212 FTTKSTANCPPLPRADIDRIHHAKEILINNFDNPPSLLDLARQVGLNDHKLKRGFRHCFG 271 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 T+ LR RM AK+LI + ++ VAQ GYNS S F AFK +G+TP Y +++ Sbjct: 272 TTVFGYLRTYRMEQAKQLIAESHLTLAGVAQSIGYNSPSRFCDAFKRQFGMTPRAYQKQL 331 Query: 238 IGVTDGIN 245 G + Sbjct: 332 HGYKTDPS 339 >UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I1I4_CLOCE Length = 285 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 30/250 (12%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 DY + + F II+ ++ K ++ I++ ++ E + PS +++ + + Sbjct: 35 DYTEVKIVLSGYFKYIIDDKLYEVAKGNIIIINPGVQHE-KIIPSGVKVEEFNYGLTNIH 93 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIAD----------SHSLWLKER 111 F ELP F ++ + P +L E IK + + + Sbjct: 94 F----KELPENFLIEPSSL-----PVFTLPLYQPEIIKCINETINEQEKNEPYCDLFIKS 144 Query: 112 LCISLLAMFKKRESVNSFILTNIN---------TFTCKITGIISFNIERQWHLKDIAELI 162 + L A+ + + N I +S N Q L IA + Sbjct: 145 SIMKLTALLHRGMTANKERTEKTRLDIQTSEKTNIVNDILEYLSTNYMEQISLYRIAHNM 204 Query: 163 YTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICA 221 Y S I K ++E G S L R+ A++L+ S + I VA+ GY YF Sbjct: 205 YLSPVYISKIFKEETGESPINHLIRIRLTKARELLMSGNMPIKTVARSVGYEDAFYFSKL 264 Query: 222 FKDYYGVTPS 231 +K YYG+ PS Sbjct: 265 YKKYYGIPPS 274 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 30/223 (13%) Query: 15 DLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC--LSFFIDVNNELPGK 72 D I+ R ++ +L +V REL P +R V++ + T ++ F++ ++P Sbjct: 164 DFIVQRDML----GALVVV-----RELLGSPLPIRSVELRQATPSDMTPFVEAFGQVP-H 213 Query: 73 FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILT 132 F N + L + + A+S + ER C LLA + + V Sbjct: 214 FGAQHNRLGFSAD-------LLDDPLPRANSQLVSACERQCQMLLARHQWHQGV------ 260 Query: 133 NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYA 192 ++ ++ + ++ +A ++ S +++RL +EG+SF + + R A Sbjct: 261 -----AGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREALA 315 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 +L+ + S+ +A++ GY S FI AFK + G TP Y Sbjct: 316 DELLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQR 358 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 102 DSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAEL 161 + W E++ + ++ K E + K + N R+ L D+++ Sbjct: 400 EDIRTWFLEKMMQTCCSIRDKNED-------RSESLVEKARSYMQENYSREISLDDVSKE 452 Query: 162 IYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 + S K ++E G +FTE L + R+ AK+L+ + SI + GY +YF Sbjct: 453 VNVSPYYFSKIFKEESGENFTEYLTNIRIGKAKELLENPELSIKEIGVMSGYTDPNYFSR 512 Query: 221 AFKDYYGVTPSHYFEKIIG 239 FK + G+TP Y E+ G Sbjct: 513 IFKKHTGITPREYRERYYG 531 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 3/214 (1%) Query: 22 VISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYI 81 +I K+ ++ + E + + K +FF+ + + T ++ Sbjct: 66 LIFLAKDQTIHITMEETHEQLNYNL-IELDSASIKNAYNFFLYEHADFSDPLTKPTTKHL 124 Query: 82 -AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF-KKRESVNSFILTNINTFTC 139 A E ++ VF+L + S KE L LL+ F + E+ F + NT Sbjct: 125 LAPIETGVARVFNLLHSSNKSQKLSQDKKEYLIRFLLSEFIYEPEAFALFRELSQNTLAE 184 Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199 I II +I R+W LKDI++ +Y S S +K++L+ E TSF+E+ + RM A KL+ ++ Sbjct: 185 NIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKLLRNS 244 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 Y+I VA CGY+S SYF C FK ++ TPS + Sbjct: 245 EYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 +CS I ++ + I+ +L V R+ +L V + + +S + Sbjct: 26 ICS---INETILTFNDGNKITIAPGNLIFVDP--RQLTITHYGELENVALITQKTISLLV 80 Query: 64 DVNNE--LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER---LCISLLA 118 N L + + +I + P ++ +F + S K R L ++L++ Sbjct: 81 SALNSDSLIHSYKAHNSPFIIRKCPDIA-IFKYAANLSHKSDLSCAEKLRKRSLMLALMS 139 Query: 119 MFKKRESVNSFILTNINT-FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEG 177 +F ++ ++ ++ T ++ +I+ NI W L IA + S SL+KK+L+ E Sbjct: 140 LFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAEQ 199 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 T+++++L + RM+ A KL+ + Y++ A CGY S SYFI F+ ++G+TP+ Y +K Sbjct: 200 TTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEYQDKR 259 Query: 238 IGVTD 242 D Sbjct: 260 QHHHD 264 >UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRT4_9BACE Length = 534 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 14/204 (6%) Query: 35 DKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSL 94 +++ + + ++R + C FF+++ + +L ++G EE S + Sbjct: 336 EQVEQLVEELIDRVRETRLSLSQCHLFFLEI---VTAMISLARSGGAQVEETFGSGFTGM 392 Query: 95 FE--GIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER- 151 + WL ER C+ L + ++ + + + I+ N Sbjct: 393 VSVSDFHSPEELGRWLLER-CLKLRELLGRQRT------DSAWKTVEQAKAFIAANYADC 445 Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 ++ + ++ S + + E G SFT + + RM A +++ ++A+K Sbjct: 446 DLSVESMCAHLHLSATYFSALFKRETGQSFTAYVTELRMDQAARMLRDTDEKTYLIAEKT 505 Query: 211 GYNSTSYFICAFKDYYGVTPSHYF 234 GY +YF FK ++GVTPS Y Sbjct: 506 GYTDPNYFSYVFKRHFGVTPSKYR 529 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 K I + L+++AE S K ++ G +F + + + R+ AK+ + Sbjct: 412 KAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALAE 471 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 S+ + GYN +YF FK G++PS Y +K+ Sbjct: 472 TDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQA 512 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%) Query: 89 SLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFN 148 S FS + ++ A+ +LWL R+ ++V S + CK + N Sbjct: 269 SRCFSESDHLRTAEELALWLT-RMTDRFT------DTVFSLVEVKHRDIICKAIEYLKRN 321 Query: 149 IERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVA 207 + L+D A + S S + ++E G SF L R+ + ++ SI + Sbjct: 322 CRDRVTLEDTAGHVGLSPSYFSRVFKEEVGESFNSYLTALRISRGRAMLLDTDASIAEIC 381 Query: 208 QKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGIN 245 +CG++ SYF F+ Y GVTP + + +G Sbjct: 382 DRCGFDDQSYFTKVFRKYTGVTPGRFRARRGRPENGEE 419 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 6/167 (3%) Query: 82 AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKI 141 A+ E L + D+ + ++ER+ L+A+ + V ++ + Sbjct: 387 ADPEAVSDLALASSTEFLTLDNLAD-MRERILERLMALVAQ---VAETREQRNSSLIDRA 442 Query: 142 TGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNS 200 + I N + L+++A +Y S K + +G +F + L R++ A++L+ + Sbjct: 443 SKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGLNFIDYLTKVRLKAARELLLNTK 502 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKT 247 + +A + GY YF FK G TPS + KI G G + + Sbjct: 503 LPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFR-KIGGAHFGKSTS 548 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%) Query: 26 KKNSLFIVSDKIRRELPVCPSKLR----------IVDIDKKTCLSFFIDVNNELPGKFTL 75 ++ + +V I EL P R + ++D++ + G F Sbjct: 87 REGQILLVPQGIPLELVNEPDPERGAYRSFTIELLSEVDERLQRRYPTLCVQRGLGGFEA 146 Query: 76 DKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNIN 135 D+ + P + + L + + +H+L ++ RL +L + + + Sbjct: 147 DRPHLLRSAMPSIQALIHLVNTLLLPGAHALLIEHRLEDLILTLLLQHREQLDEARAASS 206 Query: 136 TF----TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRY 191 T T + ++ + R W ++A + S++ +++RL +G SF +L R+ Sbjct: 207 TLALDPTLAVRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLWKERLDL 266 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 AK L+ S + + VA CGY+S S F F+ GV+PS Y + +G Sbjct: 267 AKGLLRSGRHGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARHRASANG 318 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 12/146 (8%) Query: 94 LFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER-Q 152 L + A+ ++ + E++C+ L+ + R + + ++ Sbjct: 230 LDRPLPHANPLTVSMCEQMCVQLVEARRARVGTSEM-----------VRQYLTATPGNVP 278 Query: 153 WHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 + L DIA L+ TS +K+RL++EGT+F +L R A+ L+ S+ VA++ G+ Sbjct: 279 FSLDDIARLMNTSPRTLKRRLQEEGTTFRTLLAQARGAMAETLLGDAHLSLTEVAERLGF 338 Query: 213 NSTSYFICAFKDYYGVTPSHYFEKII 238 + S F AFK +YGV P Y ++ Sbjct: 339 SDLSSFSQAFKRWYGVPPGTYRSGLL 364 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 7/221 (3%) Query: 17 IINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLD 76 N + F S V + + + + + + + ++P Sbjct: 28 YFNGGDLVFADASQIQVDKCVEN-FVLVSRDTLSLFLPMLKEEALKLHAHKKVPSLLV-- 84 Query: 77 KNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINT 136 + + P V L + + + L K L +LL++F + +L + Sbjct: 85 --HHCTRDIPVFQEVAQLSQNKNLRYAEMLR-KRALIFALLSVFLEDTQFIPLLLNVLQP 141 Query: 137 -FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 ++ +I+ NI +W L IA + S SL+KK+LR+EGTS++++L + RM+ A +L Sbjct: 142 NMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLTECRMQRALQL 201 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 I SI VA CGY+S SYFI F++YYG+TP+ Y E+ Sbjct: 202 IVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQER 242 >UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Burkholderia multivorans RepID=A9ACW6_BURM1 Length = 339 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 10/148 (6%) Query: 93 SLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQ 152 L + A++ + + ER+C LL+ + R + SF+ + T ER Sbjct: 202 QLERPLPQANAATAAMCERMCAELLSRRRTRVDIVSFLNEYLATHA----------FERP 251 Query: 153 WHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 LKDIA L+ TSE +K+RL++EG F +I R A+ L+ SI +AQ+ G+ Sbjct: 252 PQLKDIAALLNTSERTLKRRLQEEGACFRDISNAVRKARAQALVAEGRLSIKEIAQELGF 311 Query: 213 NSTSYFICAFKDYYGVTPSHYFEKIIGV 240 + S F A+K + GV PS ++ G Sbjct: 312 SDMSSFSQAYKRWTGVAPSMSRQRAGGS 339 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKK 194 + + I+ N R L D++ + S K + E G +F E L + R++ A++ Sbjct: 428 SIIDRAKEYINENFRRDISLDDVSREVDISPYYFSKLFKQETGKNFIEYLTEIRLKNARE 487 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 L+ + SI + + GY+ +YF FK Y GVTPS + E++ Sbjct: 488 LLQDSRLSIKEICAQSGYSDPNYFSRIFKKYEGVTPSEFRERL 530 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 6/166 (3%) Query: 71 GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFI 130 + K G A EP L + + SL L R ++ L F Sbjct: 376 RQELAAKQGIQAGAEPSSGLPLYVL--LDEQGRLSLELCRRELLNGLTAFAALTGAGG-- 431 Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRM 189 ++ I + N R+ L+DI+E Y S I +R + E G + + L R+ Sbjct: 432 -NKEHSIMRDIARYMEQNYNREVTLQDISERFYLSREYISRRFKQEMGENVFDYLGRIRV 490 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 AK L+ + + I +A+ GY+ YF FK + G +P+ Y + Sbjct: 491 EKAKLLLQNPNLKIAQIAEMVGYDDDKYFSKVFKKFEGQSPNQYRK 536 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 76/123 (61%) Query: 114 ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + L + +S + + ++ + +I +IS ++ + W LK+IA+L+Y SES +K++L Sbjct: 110 MLLYLLMHFEQSASQAETRSYSSLSSRIRALISKDLTKPWTLKEIAKLVYMSESTVKRKL 169 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 EGT+FT++L+ R+ A+K++ ++ S++ +A+ CG+ SYF F+ YG TP Y Sbjct: 170 NKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYFGACFRKEYGATPLAY 229 Query: 234 FEK 236 ++ Sbjct: 230 RKQ 232 >UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8J9_9FIRM Length = 351 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 109 KERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 +E LL + R + N ++ I +++++ +K++A+L + S S Sbjct: 216 EEIQIQELLPQEEHRPQQTGVLPVNPSSVVYPAVVYIRDHLQQEITMKEMADLCHLSPSY 275 Query: 169 IKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + ++ G SF + R++ AK+L+ SI+ +A++ GY++ S+F FK G Sbjct: 276 FSRTFNKETGESFVNYISSRRIQLAKELLLETGKSISQIAEEVGYDNISHFTAVFKRTEG 335 Query: 228 VTPSHYFEK 236 + PS Y Sbjct: 336 IPPSVYRSS 344 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 13/233 (5%) Query: 15 DLIINRRVISFKKNSLFIVSD------KIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNE 68 D+ IN I K NS F+V I + +L+++ ID+++ F ++ Sbjct: 33 DVHINGHAIELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMIDEESITEAFKYISAL 92 Query: 69 LPGKFTLDKNGYIAEEEPP------LSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 F + P L L I + L + L L+A+ + Sbjct: 93 KQPTFPTASCSPVYTIPTPAIVDQNFVLFNKLLPSICGSSMEKTLLSQCLVFILMALNEA 152 Query: 123 RESVNSFILTNINTFTCK-ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFT 181 V + N + + I +I+ + +R+W + D+A+ ++T++S +++ L EG SF+ Sbjct: 153 GIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFS 212 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 ++L D RM A +T ++YSI+ ++ + G+ S +YF AFK YG+TPS + Sbjct: 213 QLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRKYGITPSQFR 265 >UniRef50_A9U7E9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7E9_PHYPA Length = 399 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 8/163 (4%) Query: 72 KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFIL 131 FTL +G+ ++E P + + I+ A W+ E++ R + L Sbjct: 241 SFTLYDSGHKLDDELPPADLSKELGLIENAQQWKAWVAEKVKRIC------RRFTPNENL 294 Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMR 190 + T I I + HL+D+A+ +Y S++ + R G +F + L RM Sbjct: 295 KHKETVEF-IIQYIHEHYAENIHLQDVADQVYISKNYLSTLFRQFTGETFGDYLTRVRME 353 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 AK ++ I +A++ GY + YF FK + G +P+ + Sbjct: 354 KAKSMVLEKKLLIAEIAERVGYRNVPYFTTLFKKHTGRSPTEF 396 >UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. 383 RepID=Q39HU5_BURS3 Length = 345 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 13/166 (7%) Query: 78 NGYIAEEEPPLSLVF---SLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI 134 I +P +L F L + A++ + + ER+C L+ + R + SF+ + Sbjct: 190 GAMIRHGQPASTLTFEHAHLERPLPQANAATAAMCERMCAELITRRRTRVDLVSFLNEYL 249 Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 T +R LKDIA L+ TSE +K+RL++EG F +I R A+ Sbjct: 250 AT----------RPFDRPPQLKDIATLLNTSERTLKRRLQEEGACFRDISSAVRKTRAQA 299 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 LI SI +AQ+ G++ S F A+K + GV PS ++ G Sbjct: 300 LIAEGRLSIKEIAQELGFSDMSSFSQAYKRWTGVAPSVSRQETAGS 345 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 21/202 (10%) Query: 37 IRRELPVCPSKLRIVDIDKKTCLS--FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSL 94 + +L ++ V + + ++ + P F ++ ++ ++ +L Sbjct: 159 VASDLIGKTHGIKEVRVAYSKPDHAGMYEEIF-QCPIVFNAPRHMFVWDKT-------NL 210 Query: 95 FEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWH 154 + +A+ + E+ C L +K+E+ +S +I I F + Sbjct: 211 NTPLPLANPLAKKAHEKECRELSLRIRKQETASS-----------RIVQEIEFRRQGVPG 259 Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 D+A + S +++RL++EGTSF I+ D + A L+ + + I +A + GY Sbjct: 260 FDDLARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTTNLPIQQIALELGYED 319 Query: 215 TSYFICAFKDYYGVTPSHYFEK 236 F AFK + G TP Y + Sbjct: 320 LPNFYRAFKRWTGKTPGDYRQS 341 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 1/107 (0%) Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMR 190 N K I + L+++AE + S K +D G +F + + + R+ Sbjct: 405 QQANGKIGKAKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRFGMTFIDYVTEVRIA 464 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 AKK + + S+ + GYN +YF FK + G++P+ Y +K+ Sbjct: 465 RAKKEMADPNKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKKL 511 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 130 bits (326), Expect = 5e-29, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 15/233 (6%) Query: 19 NRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKN 78 + IS K N + +++ + + + I + +N +L Sbjct: 24 GKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLS-----QIP 78 Query: 79 GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE---------RLCISLLAMFKKRESVNSF 129 + P L+L + ++A HS+ E L ++L+ F + S Sbjct: 79 VWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSL 138 Query: 130 ILTNI-NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTR 188 ++ + N + + II +I + W+L +A + S SL+KK+L+ E TS+++I+ R Sbjct: 139 MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCR 198 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVT 241 MRYA + + +I+ V+Q CGYNSTSYFI FKD+YG+TP HY + T Sbjct: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 114/249 (45%), Gaps = 16/249 (6%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 +D+ V D+ IN + ++ N+ ++ K K +I+ + + Sbjct: 48 VDHHLIVNLKNGDGDVCINGQSVTISSNATLVI-PKFSHISCTINQKDCHKNIELQLLMV 106 Query: 61 FFIDVNNELPGKFTLDKNG----------YIAEEEPPLSLVFSLFEG--IKIADS--HSL 106 + +L + ++ E + F LF+ +AD+ Sbjct: 107 GEETIAQSFKYMASLKQPNTPTANCMPVYHLNETPDVVEQNFQLFQQSLPAVADTRLEKT 166 Query: 107 WLKERLCISLLAMFKKRESVNSFILTNINTFTCK-ITGIISFNIERQWHLKDIAELIYTS 165 +L + L LLA+ + V + N + + I +I+ + +R+W + D+A+ ++T+ Sbjct: 167 FLTQSLFFILLALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTT 226 Query: 166 ESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 +S +++ L EG SF+++L D RM A +T ++YSI+ + + G+ S +YF AFK Sbjct: 227 QSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQIGHRSGFGSAAYFCDAFKRK 286 Query: 226 YGVTPSHYF 234 YG+TPS + Sbjct: 287 YGITPSQFR 295 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 129 bits (325), Expect = 7e-29, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 14/168 (8%) Query: 81 IAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFI---------- 130 + EE+ L + L + + + L +LLA ++ + F+ Sbjct: 355 LEEEKLQLMEMLLLARRMVQDQGGAPVRDQELLSALLAAGEEETARQKFVAAMVELAQAV 414 Query: 131 ---LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRD 186 + + I N + L+++A + S K ++E G +FTE L Sbjct: 415 VIKNQEPDGIITRAQDYIRQNFRKDISLEEVARTVGISPYYFSKLFKEEAGMNFTEYLTG 474 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 R+ AK+L++ SI V GY + +YF FK + G+TP+ + Sbjct: 475 IRIETAKRLLSERELSIKQVCVDSGYANPNYFSRIFKKWVGITPTEFR 522 >UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHF4_9FIRM Length = 291 Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 87/254 (34%), Gaps = 20/254 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D++ + I R+ + + I++ + + + C Sbjct: 36 DFIEMAFILSGHGKYKIADRLYDVSEGDIIILNPGQKHQALCTDPSNPATEFFVGLCDVR 95 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPL-------SLVFSLFEGIKIADS-----HSLWLK 109 F D D A + P L +F + + + + + LK Sbjct: 96 FGDFPENYLPLHLKDLTSDPATQSPILHTSGELRQKLFKICTAMSVENDVCRSGRYIMLK 155 Query: 110 ERLCISLLAMFKKRESVN------SFILTNINTFTCKITGIISFNIERQWHLKDIAELIY 163 L L+ + +++ SF T+ +I + + L IAE +Y Sbjct: 156 SYLMQMLILLLREQSEPVKINTGCSFESTSKKYVVDQIVNYFEDHYSEKISLDQIAENMY 215 Query: 164 TSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSN-SYSINVVAQKCGYNSTSYFICA 221 S I + + E G + L + R+ AK+L+ + SI VA K GY+ +F Sbjct: 216 LSPFYISRIFKSETGDTPIRHLINIRLEKAKELLENGFDGSIQEVAAKVGYDDVYHFSKL 275 Query: 222 FKDYYGVTPSHYFE 235 FK +G+ PS Sbjct: 276 FKKRFGMPPSKIRR 289 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKK 194 + + +I N +L IAE + + S + + G SF + L D RM A + Sbjct: 425 SIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRMNKAVQ 484 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 L+ S++ +A+ G+++ SYF FK +G++PS Y +K Sbjct: 485 LLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQK 526 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 15/183 (8%) Query: 52 DIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 ID +I + E+ G + + P + L + A+ + L E+ Sbjct: 170 RIDLDYPAPEYISLYEEVLGPNLHFEKAHTQIVFPRVLLEL----PLSFANEQAAALCEQ 225 Query: 112 LCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 C +LL + + FT ++ +++ ++D A + SE +++ Sbjct: 226 QCAALLGQMQA-----------VQGFTGQVRRLLANAPGHHPSIEDAAGKLAMSERSLRR 274 Query: 172 RLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 RL +EGT++ E++ D RM A + +I VA GY S F F YYG TP Sbjct: 275 RLSEEGTTYKEVVLDFRMELASSYLRGREMTIQEVAFLAGYADASNFHRTFSRYYGATPG 334 Query: 232 HYF 234 + Sbjct: 335 EFR 337 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 99/230 (43%), Gaps = 3/230 (1%) Query: 20 RRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNG 79 + ++ + + +++ + V + + + ++ V +E F ++ Sbjct: 50 GQELTIQAGEMVLLAAG--QTFDVLNNPDAKLGFYQAGWIALEQRVVDEFADLFGVETYV 107 Query: 80 YIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVN-SFILTNINTFT 138 + PL+ + + F+ ++ A + + L + L + ++ + SF+ + Sbjct: 108 QELAKIQPLAPLKAHFDVVRQALENDEAPELVLKLKLFELLAWLKAEHLSFVPHEKHNLL 167 Query: 139 CKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITS 198 +I +I+ N +W + IA ++ SE+ +++ L+ T+F E+L D RM A L+ Sbjct: 168 RQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREVLTDVRMSRALTLLQI 227 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTI 248 + + +A + GY+S S F FK +G PS E + + + Sbjct: 228 TKWQVARIANEVGYDSPSRFTVRFKQRFGFLPSDIRENLSQPVQNEQQKL 277 >UniRef50_C0Z962 Probable two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z962_BREBN Length = 234 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 46 SKLRIVDIDKKTCLSF-FIDVNNELPGKFTLDKNGYIAEEEPPLSLV----FSLFEGIKI 100 R + I +K L F+D+N LPGK L + + + L+ + F K Sbjct: 34 DGSRAMAISQKVPLHLAFLDIN--LPGKSGLVLGEELRAQHKDIELIIVTAYQDFHYAKQ 91 Query: 101 A------DSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWH 154 + D + + E + +L ++K +++++ II + + Sbjct: 92 SIRLGVVDYITKPVIESELVDILKKYQKSPALSAY-----TRIISDAMNIIHQKFAEKLN 146 Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKK-LITSNSYSINVVAQKCGY 212 L D+A ++ + + + +R +E G SF+E L R++ +KK LI +SI+ VA++ G+ Sbjct: 147 LADLAAEVHINPTYLSRRFHEEVGVSFSEYLMQYRIQMSKKFLIAHPDWSISTVAERTGF 206 Query: 213 NSTSYFICAFKDYYGVTPSHYFEK 236 NS YF F+ G TP Y +K Sbjct: 207 NSQHYFSTIFRKVVGKTPKEYRDK 230 >UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VN05_ALCBS Length = 342 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%) Query: 81 IAEEEPPLSLVFSLFEG-IKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTC 139 +EE L S E ++AD + + C ++ + Sbjct: 194 FDQEENALVFPLSALEARPRLADPQVAAIARQQCEMEFRQWRTEDE---------GVMAR 244 Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199 +I + + L+ +AE + S +K+ L+ G S+ ++ + R + A++L+ + Sbjct: 245 RIRSALQDHPAPLPSLQGMAERLAVSARTLKRHLQQAGLSYRQLQDEERYQQARRLLVQS 304 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 SI+ VA + GYN + F AFK + G+TPS Y EK Sbjct: 305 ENSISEVAYRLGYNDVANFSKAFKRWSGMTPSAYREK 341 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 4/171 (2%) Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRE 124 + P + TLD + + + +G++ + + LLA + Sbjct: 96 FFAQHPSRETLDLARVLRPDAAWDEAFLRVVQGVQT--RLPETVLAARTMELLAWLAQAG 153 Query: 125 SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEIL 184 +V F + + +I +I+ ++ W + D+A+ + SE+ +++RL +EG SF E+L Sbjct: 154 AV--FNPHSAQRLSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRELL 211 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + +M A L+ ++ + VA GY S + F F+ ++G TPS + Sbjct: 212 GNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTPSDVRK 262 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 14/242 (5%) Query: 15 DLIINRRVISFKKNSLFIVSDKIRRELPVC------PSKLRIVDIDKKTCLSFFIDVNNE 68 +++IN + I + + I+ + + P +L + + + + F+ + Sbjct: 33 NIVINGQSIEIESDVTLIIPKYSQVSCNIVCNTVKQPLELHTLSMSAEELQAVFLLLKTL 92 Query: 69 LPGKFTLDKNGYIAEEEPPLSLVFS-------LFEGIKIADSHSLWLKERLCISLLAMFK 121 + L + I PP ++ + L + A +L +K+ L L+A+++ Sbjct: 93 MKSGAPLTSHQPIYHISPPETVRDNFSLLKQCLPLKKQSASQEALLMKQSLYFILMAIYQ 152 Query: 122 KR-ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + + +N F IT +I+ +++WHL D+A+ ++T+ S +++ L EG SF Sbjct: 153 EGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTPSTLRRHLNREGVSF 212 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 ++L D RM A +T ++YS+ ++ +CG+ S +YF FK Y +TPS + + Sbjct: 213 RQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKYNMTPSQFRLQSRQS 272 Query: 241 TD 242 D Sbjct: 273 ND 274 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 71 GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFI 130 + +NG + E I+ D+ LW ER+ I+ + K++ + Sbjct: 371 AEHIAYENGGMIYEFRSRRDYLPTIVEIEQYDALRLWFAERIEIACRNVENKKKVTSI-- 428 Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRM 189 + K I N ++ L++++ + S K ++E GT+F + L + RM Sbjct: 429 -----STVEKAKLYIRDNYQKDLSLEEVSRQVDISPYYFSKVFKEETGTNFIDYLTELRM 483 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 AK+L+ + S+ + GY+ +YF +FK G+TP+ Y E Sbjct: 484 SVAKQLLLESERSMKEIGIMVGYSDPNYFSRSFKKNIGITPTEYKE 529 >UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I9Z9_9CLOT Length = 284 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 24/251 (9%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKKTCLS 60 D++ S D +I + KK + I + + EL + R + I Sbjct: 39 DFIELSFITSGSVDYLIEGEKYTLKKGQVLISNPGVYHQELFEANTNCRELHIGLTNLNL 98 Query: 61 F------FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCI 114 F +ID+ N+ FT K+ + + E K + S ++ + L + Sbjct: 99 FSNVKKDYIDIGNKNVLTFTKYKDEILKS-------CLEIVEEQKTYNQTSPFMLKSLVM 151 Query: 115 SLLAMFKKRESVN---------SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 LL + + + SF IT ++ N L +++ +Y S Sbjct: 152 KLLVLLYREINEEDTTRDSKEFSFKSREKKALVESITKYLTENYTEDISLYTLSKNMYLS 211 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 I K ++ G S L R+ AK+L+ + SI +A+ GY+ YF +K Sbjct: 212 PVYISKIFKELMGDSPINYLIQIRLSKAKELLDDSKLSIKSIAKMVGYSDPYYFSKLYKK 271 Query: 225 YYGVTPSHYFE 235 YYGV+P+ Sbjct: 272 YYGVSPNKSRN 282 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE- 176 ++F + S + I+ + L+DIA+ ++ S + I + + E Sbjct: 416 SVFHQIMDRISARRPQYGEAVERACEYITLHYAEDLMLQDIADHVHLSRTYISELFKKET 475 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 G ++ E L RM AK+L+ + + A GY++TSYFI FK+Y G++PS Y E+ Sbjct: 476 GMNYNEYLMQVRMEKAKELLKRQTLKVADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQ 535 Query: 237 IIGV 240 V Sbjct: 536 QRSV 539 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 2/139 (1%) Query: 98 IKIADSHSLWLKERLCISLLAMF-KKRESVNSFILTNINTFTCKITGIISFNIERQWHLK 156 IK+ D ++ + + +L F K + N ++ I N + LK Sbjct: 103 IKVDDYLLKPIRPQKIVDILNEFIKDNKKRIEESNKNCTEEFQEVVEYIDKNFKNDITLK 162 Query: 157 DIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNST 215 D+A+ + S S + K + E G +F + R+ AK+++ +++ SIN +A GYN Sbjct: 163 DVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILINSNISINEIAFSVGYNEP 222 Query: 216 SYFICAFKDYYGVTPSHYF 234 +YF FK +TPS Y Sbjct: 223 NYFCKVFKKIVNMTPSEYR 241 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 130 ILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTR 188 I + N I + + + L+ IA + S I ++ + E G + ++ L R Sbjct: 428 IHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKFKQEFGVTLSDFLGRIR 487 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 + AK L+ + I +A+ GY YF FK G TP+ Y +K + Sbjct: 488 IEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNEYRKKHMN 538 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 17/180 (9%) Query: 70 PGKFTLDKNG------YIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 P F + Y A E+ + L ++ ++ C + L K+ Sbjct: 178 PNHFHRFRRSIGVPVDYGASEDALVIPASQLNLPVQFSNDQLAISSREQCETALKQLKED 237 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEI 183 F C++ +I + L +A +Y SE +K+RL++E SF + Sbjct: 238 AG-----------FACRVRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQAL 286 Query: 184 LRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 + R+ A+ L+ S + +++ +A GY + F AFK + G++PSH+ + + + Sbjct: 287 VDQVRLERARDLLASTTMNLSQIADSLGYADAANFTRAFKRWTGLSPSHFRNRELQTAET 346 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTE 182 E++ + ++TF KI I N + L D+A+ + S K + G +F + Sbjct: 413 ENIKTINKEKMDTFIAKIIRFIEDNFNKDITLDDVAKEVNMSYHYFSKFFKDQTGKNFID 472 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 L + R+ AK+L+ + SI V K GY+ +YF FK G+TP+ Y I Sbjct: 473 YLTNLRVTKAKELLEDETVSIKEVCYKVGYSDPNYFSKIFKKATGMTPTEYRSAI 527 >UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM6_9FIRM Length = 241 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 13/241 (5%) Query: 2 DYVCSVVFICQSFDLI-INRRVISFKKNSLFIVSD-KIRRELPVCPSKLRIVDIDKKTCL 59 D++C ++ + Q + I+ R + +K +L I + + E S L I Sbjct: 5 DHLCELLLVSQGAGIYMIDGRRYTAQKGNLIIYNSRTVHDEFGGSGSNLVTYCIAIGGLR 64 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL--- 116 + ++ LP + + + V SLF+ I+ + L ++L Sbjct: 65 IDGLPADHLLPDGYCPVQPL-----RQHFAEVQSLFDAIEKEAKSHAEIANYLTMALITK 119 Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 LA F + E + T + I N + L DIA +T+ + + E Sbjct: 120 LAAFLREEGLQEE--QQTPTLAARARAFIDKNYKEAIRLGDIATATHTNAYYLSHLFKAE 177 Query: 177 -GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G S + + R+ A+ L+ + +I +A + GYN+++YF FK +TP Y Sbjct: 178 IGLSPMKYVILRRIGEAQNLLINTDMTITQIAAQVGYNNSNYFQNVFKGALDMTPGEYRR 237 Query: 236 K 236 K Sbjct: 238 K 238 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 78/173 (45%), Gaps = 4/173 (2%) Query: 70 PGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK---ERLCISLLAMFKKRESV 126 +F+ + + + + + + + + +L+ + +L+ ++ + Sbjct: 159 SARFSYPAPPHQSAYKAIFNTELHFDQAVTQLEFPAKFLELPVAQSERTLVEFLRESPAD 218 Query: 127 NSFILTNINTFTCKITGIISFNIERQWHL-KDIAELIYTSESLIKKRLRDEGTSFTEILR 185 ++ +I +I ++IE + +AE + S +++RL++EGTS+ E+ Sbjct: 219 LLARPAKDESYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQELKD 278 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 R A + YSI+ +AQK G+ S F AFK + G+TPS Y + + Sbjct: 279 LIRRDIALHFLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDYRQTHL 331 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 1/109 (0%) Query: 127 NSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILR 185 + + + +S N+ ++ L+++A ++ + S + + E G +F E + Sbjct: 424 EEALPVSKRREVSEARKYVSMNLGKRISLEEVAAHLHMNPSYFSRFFKKETGLTFIEYVT 483 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 D ++ AK+L+ +Y ++ + + GY++ SYFI FK G+TP+ Y Sbjct: 484 DQKIERAKELLDQTNYYVSEICEMLGYDNQSYFIKTFKAQTGLTPTEYR 532 >UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SGH8_9FIRM Length = 288 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 94/242 (38%), Gaps = 13/242 (5%) Query: 2 DYVCSVVFICQSFD--LIINRRVISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKKTC 58 + C+ +F C S + + ++ K + + IV+ ++ EL + S L + + + Sbjct: 38 THSCTELFYCLSGEGQFYLAGQLFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVASM 97 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 F + + E ++L+ L + + + L LL Sbjct: 98 EFLFSKADTNYAIFNCRE------NRERMVTLLHMLLAEADRSLDGCETVCQDLLEVLLI 151 Query: 119 MFKKRESVN---SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 + +++ N +I + N L +AEL + ++ + + Sbjct: 152 WLVRCTTISLQLEEAAPTENRECAEIKRYLDTNYREDISLDLLAELAHLNKYYLAHTFQR 211 Query: 176 E-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 E G S L R+ +K ++ + YS+ +++ G++S SYF F+ G+TP+ Y Sbjct: 212 EYGISPITYLNRRRIEESKHMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGMTPNEYR 271 Query: 235 EK 236 + Sbjct: 272 RQ 273 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 47/112 (41%), Positives = 70/112 (62%) Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEI 183 ES + + T ++ IIS + RQW L D+A+ I+ S S +K++L +EGTSF++I Sbjct: 194 ESYEIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDI 253 Query: 184 LRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 RM A KL+ ++++N VA KCGY+STSYFI FK Y+ TPS + + Sbjct: 254 YLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 11/245 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + I+ + F K L IV K I Sbjct: 31 PFNEIFYLSSGECTSFIDHNIYKFGKGDLVIVPSGCLHR-TTYNGKGMHERIVISFRNEA 89 Query: 62 FIDVNNELPGKFTLD--KNGYIAEEEP----PLSLVFSLFEGIKIADSHSLWLKERLCIS 115 + N+ + + K G + E ++L+ L D S + I Sbjct: 90 TEWIQNQTGKELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIE 149 Query: 116 LLAMFKKRESVNSFILTNI---NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 LL + ++ ++ I N ++ I + L+ +A+ S S + K+ Sbjct: 150 LLLFIIRCKNYEENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKK 209 Query: 173 LR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G F E + + R++ A L+ + SI +A +CG+N ++YF AF+ G++P Sbjct: 210 FKTATGFGFKEYIINVRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPH 269 Query: 232 HYFEK 236 Y + Sbjct: 270 KYRKN 274 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEIL 184 + + ++ + + Q L+++A+ ++ + + + KR ++E G F++ + Sbjct: 296 LVQEVRHKKEQLAVRVYEYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYI 355 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 RM A +L+ + ++ +A+K GY SYFI FK + +TP + + Sbjct: 356 HRLRMDRAVELLAETNMKVSQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 + ++ + + N N ++ I+ N E++ LK++++ IY + + + E Sbjct: 406 TSFLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKE 465 Query: 177 -GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G ++ E L R+ AKK + + S +I+ +A+K GY +YF FK G++PS + + Sbjct: 466 VGCTYAEYLTRIRIEAAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRK 525 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 16/241 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + + + I+ + L +V+ E D L F Sbjct: 41 DFCEILYVAGGAGEAILEGKKFRLAPGDLVVVNPGTLHE--------ERSDAKAPLRLIF 92 Query: 62 FIDVNNELPGK----FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER---LCI 114 + +PG + +K ++ E + L E ++ S + +E L Sbjct: 93 LAIRDFAVPGLPAGCLSQEKYRVLSCGEYRYKMDIYLRELLQETSSQIEFYQEISQGLVS 152 Query: 115 SLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 +LL + + +N ++ KI + N L ++E +Y S+ + + Sbjct: 153 ALLVLVMRLIRINPEDEAALSQECQKIKEYLDQNFTSPITLDSLSETVYISKHYLSHLFK 212 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + G S + L RM A +L++ ++ V++ GY + YF FK YG++P Y Sbjct: 213 EQTGVSPIKYLTSKRMEKACELLSETELPVSEVSKAVGYENPLYFSQVFKRIYGISPVKY 272 Query: 234 F 234 Sbjct: 273 R 273 >UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KSF8_CLOPH Length = 292 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 96/260 (36%), Gaps = 18/260 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + + I+ K + + + + + + + +V+ T + Sbjct: 36 DFTELTYILSGTSKYRIDDIYYDVKAGDMIVCNPGVFHQNMLLDGEEPLVEF--CTGFTD 93 Query: 62 FIDVNNELPGKFTLDKNGYI----AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 F N L G+I +E + S + A + + + + Sbjct: 94 FQ-FKNMPENTIQLSNQGHIVHLSSEAKRETSRLCYDMLAENEAGQVGKYFMLKAQLIQM 152 Query: 118 AMFKKRESVN---------SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 M RE + +F + + +I + N E + L IA +Y S Sbjct: 153 LMLLMREVIEAPKVTQKGCNFETYSKSYAVKRIINYLMENYEHKISLDQIAHNMYLSPVY 212 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSY-SINVVAQKCGYNSTSYFICAFKDYY 226 I K ++E G S L R+ AK++++ SI +A + GY+ +F FK Y+ Sbjct: 213 ISKIFKEETGESPINYLIKIRLEKAKEILSEREGGSIKNIANEIGYDDVYHFSKLFKKYF 272 Query: 227 GVTPSHYFEKIIGVTDGINK 246 G++P +Y + +I ++ Sbjct: 273 GISPQNYRKSLIAQRTTESQ 292 >UniRef50_C6D127 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D127_PAESJ Length = 534 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 128 SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRD 186 +F ++ K I N+E +D+A + + + + + + E G + + L + Sbjct: 420 AFTALESDSVVQKSVQYIKENVEEDISREDVAAHVGLNPAYLSRLFKKETGQNLIDYLIE 479 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 T+M A++L+ + +++ +AQ+ GY++ S+F FK YG+ P Y Sbjct: 480 TKMARARQLLDTTGMTVSAIAQQVGYSNFSHFTKMFKKQYGINPQEYRN 528 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 12/159 (7%) Query: 78 NGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTF 137 Y A L + A++ ++ + E++C L+ + + Sbjct: 231 PSYAANSNSLAFNRSFLSLPLPQANAVTVSMCEQMCTQLMQRRIAHAGMTAL-------- 282 Query: 138 TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLIT 197 + ++ L I+EL++ S +K+RL++EGT+F ++L D R R A L+ Sbjct: 283 ---VQHYLNTPDNGMPDLSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAINLLK 339 Query: 198 SNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 ++ +A++ G++ S F AFK ++G++PS + ++ Sbjct: 340 DGH-NLTEIAERLGFSDLSSFSQAFKRWHGISPSQFSQQ 377 >UniRef50_UPI0001BC838F helix-turn-helix- domain containing protein AraC type n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC838F Length = 289 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 15/254 (5%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV---CPSKLRIVDIDKKTCLSF 61 + + S II + F+ L ++ + + +++ + ++ SF Sbjct: 38 ELNLVMNTSGKRIIGDSIEDFENCDLVLLGPGLPHKWKAPTLDETQVITIQFHEQMYNSF 97 Query: 62 FIDVNNELP-GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 ++ P + + I V + A + L+ + L++ Sbjct: 98 LLNKRVFEPIRELLIRSTRGIVYTGKTFERVKERLLNLSNARGFNTALEFYSILYDLSIA 157 Query: 121 KKRESVNS-------FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 ++ + S + + + KI I N ++ LK+IAEL+ SES I Sbjct: 158 DEQRLLTSASYDSSLLVRESRSRRIEKICKYIEVNFKKDITLKEIAELVNMSESAISHFF 217 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + SF L D R+ YA +L+ + S+ +A +CG+++ S F FK Y TP+ Sbjct: 218 KKRTNRSFITYLTDVRIGYASRLLAETTQSVADIAFECGFSNLSNFNRIFKKYKNQTPTD 277 Query: 233 YFEKIIGVTDGINK 246 Y IGV I K Sbjct: 278 YR---IGVHKTITK 288 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 14/158 (8%) Query: 85 EPPLSLVFSLFE---GIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKI 141 P +LVF + + A+ L +R LA F + S + + C+I Sbjct: 189 APHDALVFERADMEAALPTANEAMAILHDRFAGEYLARFSE-----SRVTHRVRQVLCRI 243 Query: 142 TGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSY 201 + + + +A+ ++ S+ +++RL++EGTSF +L DTR A++ + Sbjct: 244 L------PQGEPKRETLAQALHLSQRTLQRRLQEEGTSFQALLDDTRRELAEQYLAQPGM 297 Query: 202 SINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 ++ A G+ S F AF+ ++ VTPS Y ++ Sbjct: 298 TLLETAYLLGFADPSNFYRAFRRWFDVTPSEYRARLGA 335 >UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0J9_9BACE Length = 425 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 10/185 (5%) Query: 54 DKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLC 113 + + F ++ L T ++ + + + DS + W +E + Sbjct: 242 NFDSIKLHFFELYISLARMST-ERGASLRNIFGLDFKFINSLNELNTLDSLAQWSRELVA 300 Query: 114 ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + +F L +++ T + I+ + + L+D+A ++ +ES + K Sbjct: 301 HFVDDIFAD--------LPQVSSATTRAVSYINAHYMDKLTLRDLASALFLNESSLSKLF 352 Query: 174 RDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 R E GTSFT+ L R+ ++ +L+ + S+ ++ G++ SYF FK G TP Sbjct: 353 RQELGTSFTDYLNRIRIEHSTELMRNTDRSLLEISGLVGFDDQSYFTKIFKKVTGTTPRQ 412 Query: 233 YFEKI 237 Y ++ Sbjct: 413 YKSQL 417 >UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0ET05_9FIRM Length = 355 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 15/174 (8%) Query: 90 LVFSLFEGIKIADSHSLWLK-ERLCISLLAMFKKRESVNSFILTNINTF----------- 137 V + E + I D++ L ++ E+L I L K ++ N I F Sbjct: 182 AVVRISEELGITDTNELVVQMEKLKIKYLLYNNKHDAYNEIIKMVDILFDKMNIKGKLSE 241 Query: 138 --TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKK 194 + I N+++ L+D+A + S + K + E G +F + D +M AK+ Sbjct: 242 GGMKAVIDYIERNLKKGISLEDVANHVNISTYYLSKIFKKEMGVNFITYVTDRKMDLAKE 301 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTI 248 ++ + + +A YN +YF AFK G+TPS Y EK + N+T+ Sbjct: 302 MLVNTDIPVLNIALDLAYNEANYFSKAFKKKTGLTPSEYREKYRNRKEEENETV 355 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 93/243 (38%), Gaps = 10/243 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + S ++ I+ + + S FIV+ + I Sbjct: 38 DELEIIYIRNGSINITIDNELFTGTGGSFFIVNPGELHYMGSNDLNADYYTILFPLEFIS 97 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPL-----SLVFSLFEGIKIADSHSLWL----KERL 112 F + F ++ ++ + + SL E + + + + L Sbjct: 98 FQSNDYVENMLFKPMRSSHVILTHSLPYSEIYAEIISLLEKLIYINKYEKGFYQLDCKIL 157 Query: 113 CISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 + +L+ + +N + +I ++ N + L D+A+ + SE I + Sbjct: 158 LLEILSNILSIPDILVKKTSNASDMRREIITYVNDNYLEKITLSDLADEFHMSEKYISRY 217 Query: 173 LRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + +F++ + R+ YAK L+ + + SI VA G+ + SYFI +FK+ YG TP Sbjct: 218 FKKHFNITFSKYVNHMRLLYAKNLLDTTNISITDVALSSGFPNVSYFIRSFKESYGKTPF 277 Query: 232 HYF 234 Y Sbjct: 278 SYR 280 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 8/225 (3%) Query: 16 LIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTL 75 + I + L ++ + R+ V + + K F V + + Sbjct: 56 VKIGDEELYPVPGQLVLMPARTRQSYSVISGRPYL-----KYWSHFSATVGDSDVFSWLN 110 Query: 76 DKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER--LCISLLAMFKKRESVNSFILTN 133 + Y + +F +D+ + L+E+ + L +F+ ++ Sbjct: 111 VPHCYDLSGNAEMPALFQQLVDAHRSDTLAARLREKSVMLDILSRVFEHQQPQIHADKME 170 Query: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYA 192 K+ I ++ + L+ +A ++ + K + G + + L RM A Sbjct: 171 DMGRLHKVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFKRHFGITPQKYLSLKRMEQA 230 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 K ++ + S SI +A G+ S +YF F+ G +PS Y I Sbjct: 231 KLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPSEYRNNI 275 >UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6G3_9FIRM Length = 532 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 10/202 (4%) Query: 35 DKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSL 94 D IR+ + + + + +++ EL A+ P Sbjct: 331 DTIRQSINRFIGRFYETRLPIGQYQLYLMELTAELVR-LARAYQLDTADVFGPDFAASLR 389 Query: 95 FEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER-QW 153 E D L E LC+ + + ++ S + I+ + Sbjct: 390 LEAFDSLDELKARLSE-LCLRISELIRRERS------NSTRGIAEGAKQFIAEHFSDPDI 442 Query: 154 HLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 ++ + + ++ S + + E G SF L + RM A KL+++ ++ K GY Sbjct: 443 SVEMLCDHLHVSPAYFSTLFKKETGMSFVAWLTNVRMDEAVKLLSTTEDKTYEISLKVGY 502 Query: 213 NSTSYFICAFKDYYGVTPSHYF 234 +YF FK +G++P+ Y Sbjct: 503 TEPNYFSYVFKKQFGMSPTKYR 524 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV-CPSKLRIVDIDKKTCL- 59 Y + + +IN + ++ C S ++ ++ Sbjct: 33 PYYEIYFLLSGNCSALINHSIYHLVPGDFVLIPQSAMHRFVYDCNSTVKRYNLFFTMDFA 92 Query: 60 --SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF--EGIKIADSHSLWLKERLCIS 115 F D + L F + + + +F E + + + + Sbjct: 93 ASLFHSDTKDILEHLFHYPVLHLTSLLQGNATRLFDTLYQETVGQDSCSQAVIPAYISLI 152 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 L + + R+ + L + IS + + L +A+ ++ S + K+ + Sbjct: 153 LSLLVRNRDHIQLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYYSKKFKQ 212 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G F E L TR+ A +L+T S ++ +A +CG+N +YF AF+ +G++P Y Sbjct: 213 ITGVGFKEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGLSPLQYR 272 Query: 235 EK 236 ++ Sbjct: 273 KR 274 >UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C0B Length = 288 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 86/250 (34%), Gaps = 13/250 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP--VCPSKLRIVDIDKKTCL 59 D+ + I R + L V + P R+V Sbjct: 36 DHYELYYLLSGERIYFIKDRSYRVRAGDLVFVDRNAVHKTLDSGRPDHDRLVLYINPELF 95 Query: 60 SFFI---DVNNELPGKFTLDKNGYIAEEEPPLS---LVFSLFEGIKIADSHSLWLKERLC 113 + ++ L F D + +V + + + S WL Sbjct: 96 ADLAVPPELAEGLKEPFGWDVPILRLPSPASEAVERMVGDMVNEMIHPQAGSSWLLRHRT 155 Query: 114 ISLLAMFKKRESVNSFILTN----INTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 + LL + + + ++ T + ++ N + L ++AE S + Sbjct: 156 VELLLFAYRSRHLGMVRSADTEPVLHPKTQAVVRYLNDNYRQALTLPEVAEAFRISPHYL 215 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + + G +F++ L R++ A++L+ + SI +A + G+++ S+F FK + Sbjct: 216 SRLFKQTTGFTFSDYLNLLRVKEAQRLLRESDDSITDIAWRSGFSNFSHFGKMFKRTVQL 275 Query: 229 TPSHYFEKII 238 +P Y ++ Sbjct: 276 SPRAYRQQYR 285 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 28/260 (10%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 +C +V C + + ++ R I + + + +L V + ++ + T Sbjct: 138 ATMCYLVVHCNNLESVLRRGRIFYS-----LFEKPVTLKLEVHGDQAVLIVDAEATFHDP 192 Query: 62 FIDVNNEL-----------PGKFTLDKNGYIAEEEPPLSLVF-SLFEGIKIADSHSLWLK 109 + L G+ EP S + LF + + Sbjct: 193 YHFFQESLLVIWHRLACWLTGQRVALDEARFNYPEPEHSSEYRHLFYCPLQFNQPDTRIY 252 Query: 110 ERLCISLLAMFKKRESVNSFILTN----------INTFTCKITGIISFNIERQ-WHLKDI 158 L + + S+ F+ T+ NT+T KI ++ ++ +Q + I Sbjct: 253 FHKRYLQLPVIQDEPSLKEFLKTSPADLLARPDDSNTYTSKIRALVGRDLSQQMPDFEFI 312 Query: 159 AELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 A I S +++RL++E TSF EI + R A ++ SIN +A K G+ S F Sbjct: 313 ASQINVSPQTLRRRLKEENTSFQEIKDNMRRDAAIYYLSRREMSINEIAFKVGFTEPSTF 372 Query: 219 ICAFKDYYGVTPSHYFEKII 238 AFK + GVTP Y E ++ Sbjct: 373 HRAFKKWTGVTPGDYRESVL 392 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%) Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE- 176 A ++ E T++N ++ I + L +A + + S + Sbjct: 396 AFIREAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVARQFHFNASYLSSYFASYN 455 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 G F+E L R+ A +L+ + +I+ ++ GY+ SYF FK G++PS + + Sbjct: 456 GEGFSEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFTKVFKKQTGISPSQFRRQ 515 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 95/241 (39%), Gaps = 8/241 (3%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFID 64 C ++ + + ++ + ++ + + I + P I + F Sbjct: 41 CLIIVLRGA-KVLSLQPELACRSGEFILAPAGIELQFMNLPEGEYI-----AVVIGFCAS 94 Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRE 124 +P D++G A +L L + I D L L + R Sbjct: 95 DLEAIPVSAPPDRDG-AAIARVDRTLAEFLNQWINWIDVSPPELWALRRKELAHLLYARG 153 Query: 125 SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEIL 184 + + ++ K++ ++ + W L +I+ L+ SES +++RL+ E F ++L Sbjct: 154 YGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFRDLL 213 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE-KIIGVTDG 243 R+ L + I +A +CGY S S F FK +G+TPS + ++ + +G Sbjct: 214 ESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMTPSELRQTRLEELGEG 273 Query: 244 I 244 I Sbjct: 274 I 274 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 18/184 (9%) Query: 55 KKTCLSFFIDVNN--ELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERL 112 ++ F+ + N +L G+F + I + L +K AD+ L + Sbjct: 223 QQDKPDFYKKIFNINQLNGEFNAKNDCLILNQNV-------LSLPLKTADALVARLTIQQ 275 Query: 113 C-ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 C + +F KR++V+S + G + LK +AE ++ SE +++ Sbjct: 276 CKQDIQKLFLKRKNVDSAAKNVKEELYDEALGFL--------SLKQVAERLHLSERTLQR 327 Query: 172 RLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 +L E TSF ++ + R + A+ L+ SI +A++ GY S+F AFK + VTP Sbjct: 328 QLAKEQTSFQLLIAEVRRKQAEFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTPK 387 Query: 232 HYFE 235 Y E Sbjct: 388 FYRE 391 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 11/187 (5%) Query: 52 DIDKKTCLSFFIDVNNELPG---KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWL 108 +I+ +F+ + + + E ++ + L E A+ + L Sbjct: 355 NINIHYMRNFYYTTLSSINNIRISVSSVDTEKKYSEGEDIASLIKLIEKTDKAEELNSLL 414 Query: 109 KERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 +E + VNSF +I K I + Q L ++AE IY S Sbjct: 415 EE-------VAVRIASKVNSFNNKSIKLILRKAIDYIQEHYNEQVTLNEVAENIYVSTFY 467 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 I + + E G SF + L D R+ AK+L+ Y VA+K G + YF FK Y G Sbjct: 468 ISRMFKKELGKSFVDYLNDVRIDKAKELLKDVRYKTYEVAEKVGISDPHYFSKLFKKYSG 527 Query: 228 VTPSHYF 234 +TPS Y Sbjct: 528 MTPSEYR 534 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 10/244 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCP---SKLRIVDIDKKTC 58 D + + + + I + L I+ R + V ++ ++ K Sbjct: 32 DSYELIFVKKGNIEFWVEDEKIELRAGDLLIIKPHTRHKFEVVGNFKAEFIVMGFYLKPE 91 Query: 59 ----LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCI 114 + ++ L + Y ++ F L ++ A + L + Sbjct: 92 SKSKIEALKEIYGFLESLENISSPFYFIHIRKRSNVFFCLESILQEAKENKKGLLLYIKS 151 Query: 115 SLLAMFKKRESVNSFILT--NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 L ++ RE N I + + I I N + DIA+ ++ SES I + Sbjct: 152 IELFIYITREMNNLEIKKGFDYSKIAKFIKDYIDQNYMEDIKIGDIAKKLFMSESSISRL 211 Query: 173 LR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G E L R+ AK+ ++ ++ I+ +A CG++S F FK Y G +P+ Sbjct: 212 FKSQFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFKKYTGCSPT 271 Query: 232 HYFE 235 HY + Sbjct: 272 HYRK 275 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 8/167 (4%) Query: 73 FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILT 132 F + + Y E + L + DS + ++E L +L A + +L Sbjct: 331 FVIFSDIYRQHESVGSQMYHDLLHELNKCDSIAE-IREVLHHALEATRYDQ------VLK 383 Query: 133 NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRY 191 N K+ I+ + + + IA+ ++ + + + + E SF++ L R++ Sbjct: 384 QHNPNIQKVLQIVLKDYAQDITISSIADTLHMNAMYLGQLFKKETNKSFSQYLNHFRIKE 443 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 A+ L+ ++++IN +A+ GY S+ YF FK G++P Y E+ + Sbjct: 444 AQNLLLKSNHNINEIAELVGYTSSGYFYKNFKKECGISPKEYRERYL 490 >UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR09_9CLOT Length = 568 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 72 KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFIL 131 F + + EE P +L E D R + K S+++ + Sbjct: 398 NFLYPLSIQLKEEGIPPLAALTLDEAFLELDRAEDSAALRDV-----LLKTTRSLSAVLH 452 Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTEILRDTRMR 190 + F + I +I + L+DIAE Y S S + + G + + +M Sbjct: 453 GTSSDFVERTKEYIFEHIGQDLSLEDIAEHFYLSPSHFSRTFKAQAGETLIRFISRCKME 512 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 YA +L+++ + I V ++ GY S +F FK Y G+ PS Y +++ Sbjct: 513 YAAQLLSNTNLKIYDVCEQVGYKSLRHFNKLFKAYTGMQPSGYRQRM 559 >UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J070_9BACL Length = 523 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTE 182 + + + + + ++ + + ++ AE + S K + G +F++ Sbjct: 406 DGLRERKERSRSHVLQRALLFVNQRFKEEISMEQTAEYVNLSPYYFSKLFKLQTGENFSD 465 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 L R+ AK+LI S S+ + + GY +YF FK G+TPS Y ++I Sbjct: 466 YLTRLRIEEAKRLIAGRSLSLKEICYEVGYKDPNYFSRVFKKSVGITPSEYRQQI 520 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 90/241 (37%), Gaps = 9/241 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV--CPSKLRIVDIDKKTCLSF 61 + + I +F + IN + + +V+ C + + + + ++ Sbjct: 41 LELIHIISGTFHVTINETTRNAVPGDILLVNSGGLHGGTPYDCVYECLVFPVSLLSSQTY 100 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPL-SLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + N L + + + A ++ + SL+ LF ++ +D L + + Sbjct: 101 ASEFLNRLDRQDLILDEYFPAGDDTAIHSLLERLFALMQDSDEGGKLQCLGLLYQFMGLL 160 Query: 121 KKRESVNSFILTNINT-----FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 + + ++++T + I + + L ++A S + Sbjct: 161 LQDRRYTASDKSDLSTHRNIYLLKNVLNYIEAHYTEKITLHELARTAGMSSKYFCHFFSE 220 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G + + + R+ A L+ +SI +A CG+N SYF AFK Y G++P Y Sbjct: 221 MTGRTPIDYVNYYRVERACCLLAGIGHSITDIAMLCGFNDVSYFTRAFKKYKGISPGQYL 280 Query: 235 E 235 + Sbjct: 281 K 281 >UniRef50_B0S295 Transcriptional regulator AraC family n=2 Tax=Finegoldia magna RepID=B0S295_FINM2 Length = 281 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 14/227 (6%) Query: 23 ISFKKNSLFIVSDKIRRELP----VCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKN 78 K N FIV+DK LP + +I +I K F+ +E+ Sbjct: 44 YCLKGNGTFIVNDKKIEILPFDVLIVNQGSKITEISKSESFEFYTLAISEVSFDTEQKDK 103 Query: 79 GYIAEEEPPLS----LVFSLFEGIKIADSHSLWLKERLC---ISLLAMFKKRESVNSFIL 131 ++ + ++ ++ I + + +R+C IS+L +R F + Sbjct: 104 AVLSIKHNHINDRDMVILYYINKILEEAKYKRFRYQRVCSCLISILITEIQRRGDLKFTM 163 Query: 132 TN--INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTR 188 + ++FT + I N ++ L I+E S+S + ++ G + + L + R Sbjct: 164 DDPAQDSFTKHVHDYIYENFNQEITLDSISEKFMISKSHLIHEFKNNYGKTPMQFLLNRR 223 Query: 189 MRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 M A L+ +++ IN +A+ CG+NS SYF AF+ VTP+ Y Sbjct: 224 MESAMLLLKTSNKPINDIAKLCGFNSQSYFDQAFRRVVKVTPNDYRN 270 >UniRef50_C5EUD7 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUD7_9FIRM Length = 286 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 5/153 (3%) Query: 85 EPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGI 144 E ++ + + + ++ + + + + + + K+ Sbjct: 130 ETEPDALYKKYHSQPMIGTEAVEGIKLIAGMINSRLLDEK----VFSLEYHEVIKKVENY 185 Query: 145 ISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSI 203 I+ NI LKDIA+ ++ S + + ++ G + T+ +++ R+ A LI + S SI Sbjct: 186 INQNISGPLPLKDIAQHVFMSSAYLSTTYKNVTGRNITDYIQERRVSAACFLIRTTSGSI 245 Query: 204 NVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + +AQ+ G++ +YF FK G+TP Y ++ Sbjct: 246 SDIAQETGFSDANYFTKVFKKKTGMTPREYRQR 278 >UniRef50_C6D8S9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8S9_PAESJ Length = 534 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMR 190 +++ K+ G I N++ + ++IA +Y + + + + R E G S T+ + D RM Sbjct: 424 KDVSNTIAKVQGYIEENLQHDLNREEIARHVYLNPAYLSRLFRKETGKSLTDYMVDRRMF 483 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 + + + ++ I+ +A GY S S+F FK G+TP Y +K + Sbjct: 484 RSIRELKLTNHKISDIAISVGYASFSHFSKQFKKSTGMTPQDYRKKYQNI 533 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 132 TNINTFTCKITGIISFNIER-QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRM 189 + ++ + I + + L+ +AE + S + + ++ E G SF +L RM Sbjct: 290 SRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIRM 349 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 A +L+ S I+ +A++ GY++ YF AFK GV+P+ Y Sbjct: 350 EKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRR 395 >UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017894C2 Length = 310 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 23/260 (8%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV---------- 51 DY +F + ++V +K +F++ + + P + + Sbjct: 50 DYFQIWYVAKGAFLHTVQQQVYEIRKGDIFVIPPFTLHSVSISPDEDIEIYGCEFMPSFV 109 Query: 52 --DIDKKTCLSFFID--VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 ++ F D K ++ + +++ L + + + + + Sbjct: 110 NERFQEQPTDHAFFDVAFLEYFLRKEMNAQSQITLDSVTDVTVRNVLKDMLIEYERRTPF 169 Query: 108 LKERLCISLLAMFKK-RESVNSFIL-------TNINTFTCKITGIISFNIERQWHLKDIA 159 + L LL + VN +L ++ I + + +L D+ Sbjct: 170 FQISLKAKLLVLLSILARQVNGELLREGFEKSEKYREIMTRVVDHIHNHYQEDMNLNDLC 229 Query: 160 ELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 L S S ++ G +F L D R+ A ++ S+ V G+N SYF Sbjct: 230 SLSNLSRSTFCILFKEWTGKTFNRYLTDLRILQAMMMLKQPELSVTDVCYSTGFNELSYF 289 Query: 219 ICAFKDYYGVTPSHYFEKII 238 FK Y G++P+ + ++ + Sbjct: 290 CRIFKKYTGISPTDFRKQAM 309 >UniRef50_UPI0001B9ECE6 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECE6 Length = 519 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRM 189 + + + + I ++ + L+ +A+ ++ + + + + E G ++ E + ++ Sbjct: 410 MVSTTSPVQRAISFIHEHLGQSLSLQQVAKHVHMNPNYFSEMFKKETGQNYIEFVTQAKL 469 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 R A L+ I+ +A + GY YF FK + G+TPS Y Sbjct: 470 RKAMHLLRETPAKISEIANEIGYEDIKYFNRLFKKWTGLTPSEYR 514 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 84/179 (46%), Gaps = 17/179 (9%) Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEG------IKIADSHSLWLKERLCISL 116 +D++ P F K+ + + S F+ + AD + + C + Sbjct: 170 VDLDFPEPEGFDKYKSKLSSTIRFNQPHLISSFDKKYLGFKLVNADPIASQIAINQCEAE 229 Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 L+ +R ++ I+S + + ++++AE ++ S+ +K++L E Sbjct: 230 LSALGERR-----------RLAMRVRDILSNSEQHYLSIENVAEYLHMSDRTLKRQLAAE 278 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 GTSF+ ++ + R R+A L++ YS+ +A + GY+ + F AFK + G +PS++ + Sbjct: 279 GTSFSTLVDEVRYRHATSLLSRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRK 337 >UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KLS8_CLOPH Length = 277 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 12/244 (4%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI---VDIDKKTCLSF 61 + + +N + + K L ++ + + K Sbjct: 30 EMYYLLSGTRRFFVNDTLYNVSKGELILIEEGALHRTTYISGGSHERICITFSKSFLQPL 89 Query: 62 FIDVNNELPGK-FTLDKNGYIAEEEPPLSLVFSLFE-GIKIADSHSLWLKERLCISL--- 116 F + E K F+ + S + D++SL+L L Sbjct: 90 FQEFGEEAVLKCFSQPYVRIPQSRREYFEDLISKAHREMMYQDTYSLYLASSHVYELILF 149 Query: 117 ---LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 L K++ + + + + K I N + L++ A S + K+ Sbjct: 150 ILRLNSISKQDDITPYDASPDDQIMEKAAKYICSNYQSPVTLEETAAYCNMSTTYFSKKF 209 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + G F E L R+R A +L+ I +A G+N ++YF FK G++P Sbjct: 210 KAVTGFGFKEYLISIRIREASRLLLHTKLPITEIALLSGFNDSNYFGDVFKRMKGISPCK 269 Query: 233 YFEK 236 Y + Sbjct: 270 YRKN 273 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 16/168 (9%) Query: 72 KFTLDKNGYIAEEEPPLSLVF---SLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNS 128 F IA + ++VF L E ++ ++ + E + +LL + Sbjct: 176 HFETAMGCKIAWSQNRTAMVFDKSQLLEPWQMRNTEIIRANEPMLDNLLKSLR------- 228 Query: 129 FILTNINTFTCKITGIISFNIERQWHLKD-IAELIYTSESLIKKRLRDEGTSFTEILRDT 187 K+ + ++++ ++ IA+ ++ S +++RL+ E TS+ E+++ T Sbjct: 229 -----TGDIAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEVVQQT 283 Query: 188 RMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 RM+ A++L+ S S V CG++ S F AFK + G TPS Y Sbjct: 284 RMQLAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDYRS 331 >UniRef50_C6D8V3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8V3_PAESJ Length = 309 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 20/268 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP---VCPSKLRIVDIDKKTC 58 D+ + I + + N+ VI+ +K L ++ + L P ++ V+ + C Sbjct: 40 DWTEFMYVISGNCTVETNKDVIAMRKGDLIMLDAGVPHRLIVESGSPCRMLNVEFGFQPC 99 Query: 59 LSFFIDVNNELPGK-----------FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 + +N T+ Y + +LVF L G + + Sbjct: 100 DGIYPSMNQLANHNPMFSKLLEQRLDTIVLRDYEDIQVNLRNLVFELDLGGEGKEQGREM 159 Query: 108 LKERLCISLLAMFKKRESVNSFILT--NINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + L LL + +V + T I+ + + T I + KDIA + Sbjct: 160 MTNLLMSQLLVRVGRLVAVEAKNSTERQIHHYVRQATEYIHQYYDTAIQAKDIAAAVNLH 219 Query: 166 ESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 +++ + + + E L D RM AK L+ I VA G NS YF FK Sbjct: 220 PVYLQRIFKSNMNKTINEYLVDLRMDKAKMLLARTDVPIIEVADHIGLNSRQYFSMLFKK 279 Query: 225 YYGVTPSHYFEK---IIGVTDGINKTID 249 G++P+ Y + I TD + +D Sbjct: 280 MTGISPAEYRKSKNTISSWTDYEVEIVD 307 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%) Query: 93 SLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER- 151 + + W++ + + E V+ + + +I N Sbjct: 225 RQISELSTKEKFREWMRNIIEVVC-------EYVSLTKNSKNRKLIDEAIKLIQENYSDL 277 Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 L IAE +Y + + + + E G +F++ L R+ AK+L+ I VA+ Sbjct: 278 NISLNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRIEKAKELLKDVKVKIYEVAEAV 337 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFEKII 238 GY YF FK+ G TP Y EKI+ Sbjct: 338 GYTDQHYFSKVFKNITGFTPKEYREKIL 365 >UniRef50_C6CSY2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSY2_PAESJ Length = 533 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 1/160 (0%) Query: 84 EEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITG 143 E P ++ L + DS ++ L+ + ++ + +I Sbjct: 370 EWPAITTASPLLADQRAIDSVMTLSALHAYVAELSAAIEAHIRARASSSDASNPMSEIVA 429 Query: 144 IISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYS 202 + + L D+A + S + ++ + G +F E + RM A +L+ + Sbjct: 430 YLDGHYFEDVGLIDMATRYHMDPSYLSRQFKAATGVNFIEYVTRKRMEKACELLRESDRK 489 Query: 203 INVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTD 242 ++ +A+ GY + YF FK + G TPS + E + V+ Sbjct: 490 VSDIAELVGYENQRYFSQVFKKFTGQTPSEFRELPLSVSQ 529 >UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=Enterobacteriaceae RepID=D2THV7_CITRO Length = 284 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 9/236 (3%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC---LSFFID 64 + + + + + + + + LP+ + ++ + LSF+ Sbjct: 53 IVLRGEYGNQLEKSQHRLVEGEMLFI-PARAANLPISEKPVMLLSLVFAPAWFGLSFYDT 111 Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRE 124 + L + + E + + + + + + L +SLL + + Sbjct: 112 RSASLLRPLRRIELPHPQRGEG--EAMLTALTHLSRS-PQEQAIIQPLVLSLLHLCRSVV 168 Query: 125 SVNSFILTNINTFTC-KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT-SFTE 182 + I F I + N R + +A + + + + GT SF + Sbjct: 169 NTPPDIRRPRAEFLYHSICNWVQDNYARPLSRESVATFFNITPNHLSRLFTRHGTMSFVD 228 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 +R RM A+ ++ S+N VAQ+CGY + YF F+ +G+TP Y + Sbjct: 229 YVRWVRMAKARMILQKYHLSVNEVAQRCGYEDSDYFCRLFRRQFGLTPGEYRARFQ 284 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 116 LLAMFKKRESVNSFILTNINTFTCK-ITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 L M + V S +T + I + L+ ++ ++ S S + Sbjct: 409 LRGMLSEAMQVLSEQKRQADTRPIRTAKQYIQEHYADPLTLEWVSNIVGFSGSYFSSLFK 468 Query: 175 DE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 E G +F E L + RM AK+L+ + S+ V + GY+ YF +FK G+ P + Sbjct: 469 KETGQNFLEYLSEVRMNRAKELLRETNLSVAEVCVRVGYSDLKYFTKSFKKATGLKPGEF 528 Query: 234 FE 235 + Sbjct: 529 RK 530 >UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIX4_BACSK Length = 765 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 75/178 (42%), Gaps = 10/178 (5%) Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEG---IKIADSHSLWLKERLCISLLAM 119 + L L + + ++ L +L++ I + W RL LL+ Sbjct: 590 VSFMRLLNRMLQLYQQSGLRHDQGVLLPEGTLYQECLTIPSQEQMKNWFVSRLIDPLLSA 649 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGT 178 FK+ + + K+ I + + L+ A ++ + + + ++ Sbjct: 650 FKQ------VSESQFQHLSEKMIDYIHQHYHQAVTLEQCAADLHYNANYLSSVFKEGTAM 703 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 +F+E L R++ AK+ + S + +A+K GYN++ FI +FK G+TP Y ++ Sbjct: 704 TFSEYLAQYRLKKAKEWLAKTSEPVKTIAEKLGYNNSQNFIRSFKKMTGMTPGQYRQQ 761 >UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicutes RepID=Q2BDI9_9BACI Length = 525 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EG 177 + + V ++ ++ K I + L+ AE + S K +D G Sbjct: 406 LLRIVRHVQAWRNSHAKDMLYKAKEYIEAHYAEALTLESAAEYVDLSPFYFSKLFKDRFG 465 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 +F + + D R+R AK + S S+ + GY +YF FK + G++P+ Y ++ Sbjct: 466 MTFIDFVTDVRIRKAKHFLKEGSLSLKEICYSIGYKDPNYFSRVFKKHTGLSPTEYRKE 524 >UniRef50_C6J0N4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J0N4_9BACL Length = 533 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 11/192 (5%) Query: 48 LRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIAD-SHSL 106 +R + IDK + ID+ + L + AE +L S+++ + + ++ Sbjct: 351 VRQLRIDKSLVYEWAIDLLDRLEEQIHSPSLNGQAEPVKRAALYQSVYDCQTLQEIEAAI 410 Query: 107 WLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 W + LL ++ ++ II ++ ++ +Y S Sbjct: 411 WRAAAHYLELLMERATDKNA---------KLVHQVCQIIDNTYHEPITIQSLSSQVYLSP 461 Query: 167 SLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + ++ R G + + L R+ AK+++ S + +AQK GY STSYFI F Sbjct: 462 NYLRSIFRDKTGMTIHDYLTRIRLEKAKEMLADPSLKVQDIAQKIGYESTSYFISLFVKN 521 Query: 226 YGVTPSHYFEKI 237 GVTP+ Y + + Sbjct: 522 QGVTPNEYRKNL 533 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 26/232 (11%) Query: 20 RRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNG 79 R + + I R E R++ + F + F+ + Sbjct: 112 RTEFHLQGDDAVIEYHCERPEYYHRAGMDRMLALSVTRARRFVSEKIYLTKVGFSHPEPE 171 Query: 80 YIAEEE-----------PPLSLVFS---LFEGIKIADSHSLWLKERLCISLLAMFKKRES 125 Y+AE E P SL F+ L + + + R +LL R + Sbjct: 172 YVAEYERIFQCPVSFNQPCCSLAFNKDFLTFELPQRNPYLHQALTRQVEALLQKLSLRRT 231 Query: 126 VNSFILTNINTFTCKITGIISFNIER-QWHLKDIAELIYTSESLIKKRLRDEGTSFTEIL 184 V+ K+ I++ + R + +AE + S + ++L+ EG SF E++ Sbjct: 232 VSH-----------KVKAIVAKRLSRGDIEAEKVAEKMNMSRHTLYRKLKQEGVSFQELV 280 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 R A + YS++ +A G++ S F AFK + G +P+ Y + Sbjct: 281 EQVRKDKALDYLQKGKYSLSEIAFLLGFSELSAFSRAFKRWTGESPASYRSQ 332 >UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D477_PAESJ Length = 305 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 96/252 (38%), Gaps = 20/252 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 Y+ V + + V K SL+I+ + R++ + + Sbjct: 46 AYLEIVYVMSGEGYHYVADEVNKTSKGSLYIIPIGTSHIFRPNGTANRLLVYNLCIRPDW 105 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIA-----------------DSH 104 ++ L ++ D + + P + +F +++A ++ Sbjct: 106 IGELGVWLS-QYCRDTDVLHVLDGNPGTYLFLRDTPLELAPSFEQLHREFTEESWGFETT 164 Query: 105 SLWLKERLCISLLAMFKKRESV-NSFILTNINTFTCKITGIISFNIERQWHLKDIAELIY 163 L +L + K ++S + + ++ I I+ +I ++ +A+ Sbjct: 165 VLAGLLQLLTRISRKLKTQDSTGDQTTGSTRHSEFVSIVEHINRHIAEPLKMEQLADQAG 224 Query: 164 TSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 S+ + R G F+E +++ R+ A +L+T S S+ +A+K GY ++F F Sbjct: 225 ISQRHFIRLFRQQTGMGFSEYVQNKRVELACQLLTGTSQSVADIAKKVGYQDPAHFREVF 284 Query: 223 KDYYGVTPSHYF 234 + G+TPS Y Sbjct: 285 RKVMGITPSQYR 296 >UniRef50_A0AHT2 Complete genome n=15 Tax=Listeria RepID=A0AHT2_LISW6 Length = 183 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRE 124 +N+++ +FT ++ P S + E +++ D S + K+E Sbjct: 13 MNSQVENQFTQQIQEDFTQKNPDHSALLHSLETVEVLDVLSDYYTAHEKQK----HPKKE 68 Query: 125 SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEI 183 + S + + I NI R L+++A +Y S + K ++E +F Sbjct: 69 TAPSNKNNGEHKEIKQAIRYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINY 128 Query: 184 LRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + + +M YAK+ + + ++++ +A+ G++ SYF FK + +TP Y + + Sbjct: 129 VNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKQFDMTPKEYRDSL 182 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 138 TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLI 196 +I + N + +L++IA+ Y S I ++ + + T+ L RM AK L+ Sbjct: 421 MQRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQDYDATITDYLTSIRMEKAKNLL 480 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + I VA GY + YF FK + GVTP+ Y + Sbjct: 481 KNPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQSY 521 >UniRef50_C6CVB2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVB2_PAESJ Length = 542 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 12/204 (5%) Query: 33 VSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVF 92 V KIR + + ++ I+ + L G F+ YI + L Sbjct: 342 VETKIRHIF-----RDMLETGGEQDMSEQLIEAYHVLAGAFS-----YIIHKNGKLLSSV 391 Query: 93 SLFEGIKIADSHSLWLKERLCI-SLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER 151 E +K + + +L S+ + RE + + N +T + I N+ + Sbjct: 392 LSPEALKFFHAPAYTTAAQLMEWSIRILQGIREDADQELKDNHSTIVRAVRSFIDANLAK 451 Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 L IA+ ++ + K + E G TE + RM A L+ + + +++ Sbjct: 452 DVSLPAIADHVHLHPVYLSKIYKAETGEPLTEYVYRLRMEKAAFLLRTTPSKVFEISEIV 511 Query: 211 GYNSTSYFICAFKDYYGVTPSHYF 234 GYN+T+YFI FK ++ VTP Y Sbjct: 512 GYNNTAYFIRVFKKFFDVTPQEYR 535 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRM 189 L + + + I ++ + +DIA +Y + + + + E G S ++ L R+ Sbjct: 421 LEHSPSVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRL 480 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 R A +L+ + +++ VA + GY + S+F FK Y G+ P Y + Sbjct: 481 RIAAELLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQS 527 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 24/207 (11%) Query: 31 FIVSDKIRRELPVCPSKLRIVDIDKKTCLS-----FFIDVNNELPG-KFTLDKNGYIAEE 84 F+V I + PS + + + + C +F + LP F N E Sbjct: 154 FMVETAILFNSLLTPSHDKTMKANAELCFEWPEPPYFARYRDRLPRCHFGAPANQIRCEA 213 Query: 85 EPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGI 144 L E I+ A++H+ + + C + LA ES+ ++ + Sbjct: 214 A-------LLDEPIRTANAHTAQMIVQQCEAELARLGYAESI-----------VERVRNL 255 Query: 145 ISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSIN 204 + L +A ++ SE +K++L D G +++ +L + R+R A +L+ ++ Sbjct: 256 LIRGNNGYPSLDALARELHLSERTLKRKLSDYGATYSALLDEIRLRDALRLLEGTHLTVE 315 Query: 205 VVAQKCGYNSTSYFICAFKDYYGVTPS 231 +A + GY + F AF+ + G +PS Sbjct: 316 EIAARVGYTDRANFSRAFRRWTGTSPS 342 >UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETL2_9FIRM Length = 517 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAK 193 N + I + + L+++A + + + E G +F+ LR R+ +AK Sbjct: 415 NYTIKRAINYIREHYKEGISLEEVAGRLGITPEYLSTLFNREMGENFSTFLRKFRISHAK 474 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 +L+ + +A++ GY YF FK+ G++P Y ++ Sbjct: 475 RLLKGTDMKVYEIAEEVGYTDPKYFARVFKEELGISPGDYRQQ 517 >UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR78_9CLOT Length = 281 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 8/242 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI---VDIDKKTC 58 Y + + IN+ + + + I+ + PS + + T Sbjct: 39 SYYEIYYLLSGKCKMFINQDIYYLEPGDMTIIPPLEVHKALYEPSWEAERFGIYFSRDTV 98 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPL--SLVFSLFEGIKIADSH-SLWLKERLCIS 115 SF E G I E P L+ + + K DS+ + L L Sbjct: 99 TSFLSLCGREAFGHIFSQPKRTIPSEFRPKIEELLAQMQDEEKQGDSYCQIQLCSLLHQI 158 Query: 116 LLAMFKKRESVNSF-ILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 L+ + + +E+ L + ++ + + L +A S + K+ + Sbjct: 159 LVVLGRCQEARREGHALEEAEEAMVRAARYMNQHYQEGVTLGQVAAFANMSPTYFSKKFK 218 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 G F E L R++ A ++ + S+ VA CG++ +YF F+ GV+P Y Sbjct: 219 SSTGLCFKEYLNYIRVQKASDMLRNTDLSVTGVAMACGFSDGNYFGDVFRRLTGVSPREY 278 Query: 234 FE 235 + Sbjct: 279 RK 280 >UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C356F7 Length = 268 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 18/247 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + + IN + + + + S + +++ +SF Sbjct: 23 THYEFYYLYSGHCKIFINHTLYYVEPGDIIFLKPGEIHRTTYHSSPV-----NERVTISF 77 Query: 62 ---FIDVNNELPGKFTL---DKNGYIAEEEPPLSLVFSLFEGIKI----ADSHSLWLKER 111 ++D EL G+ + +N + S V L I+ D S +K+ Sbjct: 78 DGEYLDSMKELCGEENVEYIFRNSKVTVPNGNRSRVEELIRRIEYEETGQDGFSPLMKKG 137 Query: 112 LCISLLAMFKK--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 LL + + L I + + L+++AEL + S + Sbjct: 138 CFYELLVSLSRCQEAETDHGRLEIGEETIEAAAKYIYDHYQNPITLEEVAELSHMSPAYF 197 Query: 170 KKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 ++ + G + E L + R+R A +L+ ++ S+ +A +CG+ +YF AF+ GV Sbjct: 198 SRKFKAVTGFGYKEYLTNIRIREASRLLLHSACSVTEIADRCGFGDGNYFGDAFRKAKGV 257 Query: 229 TPSHYFE 235 +P + + Sbjct: 258 SPRAFRK 264 >UniRef50_B9MLQ2 Two component transcriptional regulator, AraC family n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ2_ANATD Length = 519 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 99 KIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDI 158 +I +S + E ++L++F K ++ + I+ N + K I+ N + L I Sbjct: 376 QILNSSYEQIVEIFKKAVLSLFSKAKTKHEQIINNDS--INKAIEFINQNYSEEITLSQI 433 Query: 159 AELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 + + K + G SF L R++ A +L+ + S SI ++ G++ +Y Sbjct: 434 SSTFNFNPYYFSKLFKKYTGVSFKTYLTKLRIQKACQLLKNTSKSIKEISFAVGFSDPNY 493 Query: 218 FICAFKDYYGVTPSHYFEK 236 FI AFK + G+TPS + Sbjct: 494 FIKAFKKFTGMTPSAFRSS 512 >UniRef50_UPI0001789612 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789612 Length = 405 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Query: 129 FILTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRD 186 F ++ + +I R+ L+ A+ + S + + L+ E GTSF ++ Sbjct: 290 FKEAQLSPLVRRARQLIQEQYAVRELTLESFAQALQVSPVYLSRMLKKELGTSFITLMTQ 349 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 TR++ A +L+ + SI +A++ GY+S YF AFK GV+P+ Y + Sbjct: 350 TRIQKAIQLLNATELSILDIAERVGYDSQHYFSTAFKKVMGVSPNRYRK 398 >UniRef50_UPI0001C36936 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36936 Length = 527 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMR 190 + + + I + L+ +AE IY + + +++ G +F E L R+ Sbjct: 410 KSRSPVIDRALVYIREHYSENITLQSLAEDIYLHPVYLSRLFKEKVGQTFLEYLTHYRIE 469 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTI 248 AK + + + I + Q GY + YF FK+ G TP + E++ G + K + Sbjct: 470 MAKDYLRNPNLRIYDIGQMVGYETPQYFSRVFKELTGTTPKGFREELAGKGEKHEKGV 527 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMR 190 T + + + ++ ++DIA+ ++ + S ++ G +F++ L R++ Sbjct: 148 TQYSAPVKEAIQYLEEHLHEPVTMRDIADHLHMNASYFSVLFKEQTGLTFSDYLTRRRVQ 207 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGIN 245 AK+L+T+ SIN +A+K GY + YF+ F+ + GV+P Y + + + I Sbjct: 208 RAKELLTNTRLSINEIAEKAGYQTAKYFVKVFRSHEGVSPGQYRKNVSHAEETIQ 262 >UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TXY8_MARAV Length = 346 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQ-WHLKDIAELIYTSESLIKKRLRDEGTSF 180 K+ + L +F+ K+ +IS + +A + S + ++L+ EG SF Sbjct: 225 KQVNAVMARLQTRRSFSRKVRRLISRQMATDRIDADTLARQCHMSRQTLYRKLKKEGMSF 284 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 +++ R A + + + Y++ +A G++ S F AFK + GV P+ + G+ Sbjct: 285 HDLVEQVRKDKALRYVADDQYALGEIAFLLGFSELSAFSRAFKRWTGVAPAQFRASHQGL 344 >UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFA6_VIBFU Length = 268 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 92/237 (38%), Gaps = 6/237 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ ++ + I+N I+ +N + +S K R L + +I + Sbjct: 34 DFHELMIVTKGAGQHILNDVPINLAQNYICYISPKDRHLFEQS-DNLHLTNILFQKNKLA 92 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEP---PLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 + + + K + + + E +L+ + + S + E L L+ Sbjct: 93 YSPLLKSVLPKESDAQQSWYISTETMKKVCTLMAQIEHESSLHSVESRLMTEALFQQLVV 152 Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EG 177 + + + N+ KI I N ++++ DI++ S + +R++ Sbjct: 153 EISRGRLTSQSNNASDNSIL-KIIDWIQNNYAEEFNVGDISDQFEISSRTLSRRIKQVTN 211 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 SF + R+ +A L+ + S+ +A + GY ++YF FK + TP+ + Sbjct: 212 LSFNNYVHRVRINHAMNLLHYSDLSVTDIAFQVGYKDSNYFSTKFKRFTNKTPTEFR 268 >UniRef50_C6CUY4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUY4_PAESJ Length = 541 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFT 181 R+SVNS + ++ K+ I ++E+ L I+ +Y + S + K + E G + Sbjct: 425 RKSVNSEDKDSRSSIIRKVQEFIHNHLEQA-SLHSISTHVYLNPSYLSKIYKTETGEGIS 483 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 E L RM + L+ I ++ GY SYFI FK ++G+TP Y K+ Sbjct: 484 EYLLRARMEKSADLLAQTDEKIYEISVMLGYQKPSYFIQLFKKHFGITPQEYRNKVTN 541 >UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL10_BACSK Length = 298 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 10/239 (4%) Query: 9 FICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-KLRIVDIDKKTCLSFFIDVNN 67 + S + + KK + + R L V ++ V+ + + F Sbjct: 43 VLSGSCKVETDEGSYQLKKGQIIFLDAGTRHRLIVSERCRMFNVEFSFEQGCTAFPPFFK 102 Query: 68 ELPGKFTL-------DKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 L + + + + L + + ++ + L L Sbjct: 103 LCKENRALGNMVNKQASQLLLHDTDDTYQCLRRLILEVDKKSEQTDFMVQLLLSEYLIRI 162 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTS 179 + + + + I N +R+ + DIA ++ +++ + G S Sbjct: 163 AELAEA-KVAEPDQQAYVKRALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKAFTGKS 221 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 E L R+ AK ++ SI + G NS YF FK + TPS Y ++ Sbjct: 222 IHEFLISYRINKAKAMLKQTDISITDIPHYIGMNSQQYFSTTFKKHVKCTPSEYRKRHQ 280 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 76/209 (36%), Gaps = 11/209 (5%) Query: 39 RELPVCPSKLRIVDIDKKTCLSFF-IDVNNELPGKFTLDKN-------GYIAEEEPPLSL 90 P++L D+ ++ + N K + + + Sbjct: 68 DLFLAKPNQLITYAADETDPWEYYWVGFNGACANKLVQQTPFSDLHPVHHCKDPQAVREA 127 Query: 91 VFSLFEGIKIADSHSLWLKE-RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNI 149 +++++ + + L L I + + K+ + ++ + + I FN Sbjct: 128 LYNIYLS-RGPEPQCEALMTGYLYIFMAHLMKEARDAMPNVGSSSSQYVLSAIKYIQFNY 186 Query: 150 ERQWHLKDIAELIYTSESLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 + DIA+ + S S + + + G S + L + R+ A L+ +++ SI +A Sbjct: 187 SHDISVDDIAKAVGVSRSHLYRVFMANVGQSPIDYLTNYRISEACSLLKNSNLSIAEIAV 246 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 G+ YF FK GV PS Y + Sbjct: 247 SVGFFDQFYFSRVFKKVKGVPPSKYLATL 275 >UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=A3DHI5_CLOTH Length = 302 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 83/250 (33%), Gaps = 16/250 (6%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV-CPSKLRIVDIDKKTCL---- 59 V I N + I+ + V S + + K Sbjct: 49 EMVYIKRGKAVFEIAGYPAEIGPNDIIIIKPNQPHKFIVKSESGCEFIVLSFKFVNRFDG 108 Query: 60 --------SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 +F V+ + G F K + L+ + E I +L Sbjct: 109 QYSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRILKERENPDIGSEFLNYLLVM 168 Query: 112 LCISLLAMFKKRESVNSFILTN--INTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 L++ K E NS + I I+ N ER LKDIA ++ S S Sbjct: 169 ELFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNYERDISLKDIARYVFLSTSYF 228 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + ++E G S L R+ AK+L+ I+ +A G+++ F FK Y + Sbjct: 229 TRAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIALSVGFSNQQRFNDIFKKYVKL 288 Query: 229 TPSHYFEKII 238 TP Y + + Sbjct: 289 TPLQYRKNVQ 298 >UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Ruminococcaceae RepID=C7H5Z6_9FIRM Length = 319 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 98/244 (40%), Gaps = 13/244 (5%) Query: 2 DYVCSVVFICQSFD--LIINRRVISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKKTC 58 + C+ +F C S + +++ ++ K + + IV+ ++ EL + S L + + Sbjct: 69 THSCTELFYCLSGEGQFLLSGQLFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVSGI 128 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 F ++ + E ++L+ L + + + L LL Sbjct: 129 EILFGKADSTYAIFNCRE------NRERMVTLLHMLLAEADRSLDGCETVCQDLLEVLLI 182 Query: 119 MFKKRESVN---SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-R 174 + +++ + N +I + N + L +AE+ + ++ + + Sbjct: 183 WLVRCTTLSLQVEESPRSDNRECVEIKRYLDNNYREEISLDTLAEVAHINKYYLAHTFQK 242 Query: 175 DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G S L R+ +K ++ + YS+ +++ G++S SYF F+ G+TP+ Y Sbjct: 243 AYGISPITYLNRRRIEESKYMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGLTPNEYR 302 Query: 235 EKII 238 ++ Sbjct: 303 RQVR 306 >UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_BACV8 Length = 1340 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 2/126 (1%) Query: 113 CISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKK 171 ++L + K+ES S + N F KIT II N+E + + IA+ + S S + + Sbjct: 1213 LLALADIQPKQESAVSSLNKLDNEFLQKITQIIEENLEMEKMDIAFIADKMCMSHSTLYR 1272 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 +++ S E +R +MR +L+ S Y+I+ +A G++S +YF FKD YG++P Sbjct: 1273 KIKGLTDMSANEFIRKVKMRKGVELLMSGQYTISEIAYMIGFSSVAYFRQCFKDEYGMSP 1332 Query: 231 SHYFEK 236 S Y ++ Sbjct: 1333 SDYVKQ 1338 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 7/170 (4%) Query: 72 KFTLDKNGYIAEEEPPLSLVFSLFEGIKI-----ADSHSLWLKERLCISLLAMFKKRESV 126 F+ + + E + F+ + AD L +++ +L K + Sbjct: 163 HFSYPRPAHADEYDALFFAPVMQFDAPRTEITFAADYLDLPIRQDEK-TLEEFLKAAPAQ 221 Query: 127 NSFILTNINTFTCKITGIISFNIERQ-WHLKDIAELIYTSESLIKKRLRDEGTSFTEILR 185 N N+ T +I ++ I + L D+A ++Y S +++RL EG S+ + Sbjct: 222 LLVKFKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLAAEGKSYQGVKD 281 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 R A L+ + ++ VAQ+ G++ TS F AFK + GVTP Y + Sbjct: 282 ALRRDAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLYRQ 331 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 13/142 (9%) Query: 98 IKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIE-RQWHLK 156 + AD ERLC R+ T ++ ++ + + L+ Sbjct: 231 LPNADVLLANENERLCEIYFGRLFNRK------------LTQRVRSLLRQTMATEETSLQ 278 Query: 157 DIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 +A+ ++ SE +++ L EGT+F E++ + R A++ + S+S SI+ +A G+N Sbjct: 279 KVAQTLHLSERSLQRHLSQEGTNFRELVDEVRQEIAERYLKSSSMSISQIAYSLGFNDAG 338 Query: 217 YFICAFKDYYGVTPSHYFEKII 238 F AFK ++ +P Y + + Sbjct: 339 NFSRAFKRWFSCSPETYRQSLQ 360 >UniRef50_UPI0001851370 two component AraC family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851370 Length = 253 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 1/137 (0%) Query: 101 ADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAE 160 D L + + L K + I K+ + L+DIA+ Sbjct: 108 PDLLHEVLTKAVSAVQLQQPKGEVVAEDYKDQTITITMRKVEEYLKEYYHEDIKLQDIAD 167 Query: 161 LIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFI 219 Y S I ++ ++ + T+ L D RM+ A +L+ + + +A+K GY YF Sbjct: 168 TFYISREYISRKFKEHFHLTITDYLVDLRMKKAMELLDRTNLKVYEIAEKVGYVDDKYFR 227 Query: 220 CAFKDYYGVTPSHYFEK 236 FK + GVTP+ Y +K Sbjct: 228 KVFKKFAGVTPNDYRQK 244 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 20 RRVISFKKNSLFIVSDKIRRELPVCP--SKLRIVDIDKKTCLS---FFIDVNNELPGKFT 74 R I F K + ++ R P ++ R I + + N Sbjct: 43 GRWIRFHKKNWLLIPAHSRITFVNNPHQTQFRSTQISFLIPPTAEMIQLSQQNADTVSNH 102 Query: 75 LDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI 134 LD +I ++E ++ L + + S ++++L L ++ ++ Sbjct: 103 LDSPEFIVDDEG--RYLWQLL--LSMPKELSQAIQQQLVNGLYQYLAEKGQLHLLYAPQE 158 Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 ++T K+T S + + + ++ + + S++ + +RL DE T F E+L RM +A Sbjct: 159 ISWTEKLTQFFSQDPSQNYTIEQVCQQFGLSKATLMRRLNDESTQFREVLAQVRMGHALS 218 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 L+ S ++ +AQ+CGY S F F+ +G++P Y + + Sbjct: 219 LLQEKSQTVLELAQQCGYQSEVRFTQRFQKQFGLSPKQYQKTL 261 >UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFZ3_9CLOT Length = 296 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 93/253 (36%), Gaps = 18/253 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC--- 58 D+ V+ + + I+N KK +F+ + + P +I++I K Sbjct: 35 DFFELVIVLNGTATHIVNSEEFFIKKGDVFVFNMDLSHGYKD-PHNFKIINIMYKPERLD 93 Query: 59 -------------LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 F ++ F+ + I+ E L + E K D Sbjct: 94 EICNDIKKSPGYQALFVLEPFFRKKYSFSNTLSLSISSLEYVAELGARINEEYKRKDQGY 153 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + + ++ ++ + + +L + K + N L+ +A+ + S Sbjct: 154 QTMIYARFMEMVVYLSRQYIIENKLLHDTFVHLAKAILFLEDNYLNPIKLEKLADEAHMS 213 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + ++ GT+ + R+ +A L+ +++ I +A + G++ ++YF FK Sbjct: 214 VRHFNRIFKENYGTTPFNCILHLRVNHACSLLKNSNLCIADIALESGFSDSNYFSRQFKK 273 Query: 225 YYGVTPSHYFEKI 237 G+TP Y + Sbjct: 274 ITGITPKEYRARY 286 >UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D710_PAESJ Length = 289 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 91/240 (37%), Gaps = 13/240 (5%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC--PSKLRIV---------DIDKK 56 I V + L +V+ P+ RIV + ++ Sbjct: 45 YLYSGERKFFIRDSVYQIQSGDLILVNTNDVHRTSELSQPNHERIVLHYDLPFFDGLSRE 104 Query: 57 TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 + P L+ + E SL+ L E H + + + Sbjct: 105 ETELLLSPFASAHPI-IKLNLQERMHLEALFESLLRELQECPPGYQLHVRNMATEILLFT 163 Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD- 175 KR+S+ S LT + I I+ + L ++A+ + S+ + + ++ Sbjct: 164 ARHALKRKSLPSIELTPVQQKVTDIIRHINQHFREPLPLDELAKQFFISKGHLSRVFKEV 223 Query: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G F++ + TR++ A+ L+ +SI ++++CG+ + S+F FK+ G++P Y + Sbjct: 224 TGFGFSQYINVTRIKEAELLLKETDWSITQISERCGFENFSHFGKVFKELSGLSPRDYRK 283 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 13/228 (5%) Query: 16 LIINRRVISFKKNSLFI-VSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFT 74 + ++ + + + KN + V + + S+L K + ++ + Sbjct: 313 VYVDDKKLKYLKNEIISNVRYGNISNIDILLSELEETLKKSKADKQYIFNLYYLM----- 367 Query: 75 LDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL-----LAMFKKRESVNSF 129 L + I + S + + ++ + S LK + L +++ K E V Sbjct: 368 LIEINMIKAQVLSSSSQYEQEDKLQDIEFLSEILKCKSISELNGVLKMSIQKTIEEVQKH 427 Query: 130 ILTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDT 187 + + + K+ I N + L +I+E + S S + + + E G + ++ + + Sbjct: 428 NQSKMGSLIKKVIEYIKANYSYNEISLSEISEKFFVSPSYLSRLFKKETGKNLSDFINEY 487 Query: 188 RMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 R+ AK+L+ + VA K G YF FK Y G +PS Y E Sbjct: 488 RIEKAKELLATTDLKTYEVADKVGIPDPHYFSRIFKRYTGYSPSEYKE 535 >UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM97_9FIRM Length = 283 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 26/251 (10%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + I + L I+ + + K +I K + F Sbjct: 36 DFCVLIYVIDGCIYVTEGDTDYEVNAGELLILKNGVHHF-----GKKKIQKGTKWIFVHF 90 Query: 62 FI--DVNNELPGKFTLDKNGYIAEEEPPLSLVFSL--------------FEGIKIADSHS 105 I D N Y A E L+L L E + D++ Sbjct: 91 RISADCNASPFYPDASPLGAYDATAESILTLPKFLDSVSARFEKELKTFIEYAQSDDAYK 150 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 W + LL+ +VN+ +N T + +I +S NI + ++I + Y S Sbjct: 151 KWFINQRLFLLLSSL----AVNTQGFSNNLTLSDRICRYLSDNIGVPFSSENIEKRFYLS 206 Query: 166 ESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + + E G + + RM A +L+ S SI +A K G++ YF F++ Sbjct: 207 YKYMSHLFKKEKGVTMQQYHNSVRMDEACRLLCSTLMSIGEIADKLGFSDVLYFSRCFRN 266 Query: 225 YYGVTPSHYFE 235 Y G +PS Y + Sbjct: 267 YTGKSPSAYRK 277 >UniRef50_A7VR07 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR07_9CLOT Length = 515 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%) Query: 98 IKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKD 157 ++I+ S +L+ L M + V S L + +I+ IS N + L+D Sbjct: 379 LRISQSTTLY---SLFQVCREMIDETNQVISGRLEK-HDLVDQISRYISANYQSNITLQD 434 Query: 158 IAELIYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 IA+ I+ S + + + R G + TE + R+ AK L+ + Y + +AQ G+ + Sbjct: 435 IADQIHISSAYVSRLFRNKTGITITEAINRARIDQAKLLLGNPEYKVYEIAQMVGFEDAA 494 Query: 217 YFICAFKDYYGVTPSHYFEK 236 YF F Y G +PS Y + Sbjct: 495 YFTSVFTKYVGCSPSEYRSQ 514 >UniRef50_UPI0001788C36 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C36 Length = 254 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 82 AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFI-----LTNINT 136 A++ + L + I D K RL ++ + +S + Sbjct: 91 AKKALQFGIADYLLKPIDRKDFTVALDKIRLTLNSSNRYAGGTEPHSEADGGPPSSEGRR 150 Query: 137 FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT-SFTEILRDTRMRYAKKL 195 K+ I+ N + L+ +AE+++ + S + + + EG + ++ + +TR+R A KL Sbjct: 151 MIRKLKAHIAENPDGDLRLQTLAEMVHLNPSYLSQLFKQEGGGNLSDYIAETRIRRACKL 210 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + + + + +A+ GY S +F+ FK + G+TP Y E Sbjct: 211 LETTNLKVYDIARLSGYQSPKHFMLVFKQHTGMTPGTYRE 250 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Query: 89 SLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFN 148 S IK + S W+ L +F ES N + K I+ + Sbjct: 270 SKFLYKISNIKNIEDLSYWVIHMLDSFTQNVFNFNESKNPVL-------IQKCISYINEH 322 Query: 149 IERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVA 207 +L+ IA +++ + S + E G SF+ L R+ +K L+ + SI +A Sbjct: 323 YNEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKLLLKNTDSSIVEIA 382 Query: 208 QKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + G+ SYF FK+ +TP Y + Sbjct: 383 LEVGFEDQSYFSKVFKNLTKMTPKQYRQN 411 >UniRef50_Q476C1 Transcriptional regulator, AraC family n=1 Tax=Ralstonia eutropha JMP134 RepID=Q476C1_RALEJ Length = 344 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 88/208 (42%), Gaps = 20/208 (9%) Query: 36 KIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKN-----GYIAEEEPP--- 87 + +E + L+ + + + I ++ E P + + A P Sbjct: 141 NLLQEAIAVSTHLQCKSLLQNPSSVYDIYLSMEPPPHAARYRELAPARVHFAASPLPEIR 200 Query: 88 -LSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIIS 146 ++ +SL + +AD H++ + E C +LL ++ + + + +++ Sbjct: 201 MVADTWSLDAALPMADVHAVRMAEERCRALLQRHSEQGN-----------WAEWVVMMLN 249 Query: 147 FNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVV 206 + Q L+++A L+ S + + L+ E +SF ++ R R A+ L+ ++ + Sbjct: 250 EAEDSQPTLEELAGLLGISARTLDRYLKKEESSFRDLAITVRNRRARSLLLEGELPVSQI 309 Query: 207 AQKCGYNSTSYFICAFKDYYGVTPSHYF 234 A + G+ + F AF+ GV+PS + Sbjct: 310 AYRLGFTDVANFSRAFRRANGVSPSEFR 337 >UniRef50_C9BRE3 AraC family DNA-binding response regulator n=5 Tax=Enterococcus faecium RepID=C9BRE3_ENTFC Length = 242 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 14/194 (7%) Query: 46 SKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 S L +++ ++T +F + F K G LS+ + + I Sbjct: 62 SGLELIESLQQTSNRYFTSIVISAHQNFQYAKKGI------DLSIKSYITKPIDFPYLVK 115 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 L +E+ M K + NS + N ++ + N + LKD+A + Sbjct: 116 LVQEEK-------MRKSAANQNSLTDDSFNESIQQVIDYVQNNYSEKLTLKDVATQFHYH 168 Query: 166 ESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + + + + E G SF + L D R++ A L+ SI+ ++QK G + SYF FK Sbjct: 169 PAYLGRAFKKETGYSFHDYLLDFRIKRASALLKDTFLSIDEISQKVGIDHVSYFSVLFKK 228 Query: 225 YYGVTPSHYFEKII 238 G +PS+Y +K++ Sbjct: 229 TTGHSPSNYRKKLL 242 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 133 NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRY 191 I N + L+++AE ++ S + K + E +F + + +M+ Sbjct: 145 QDGKVIQSALNYIEENYQNGITLEEVAEHVHISPFYLSKLFKKELKMNFVSYVTEKKMQK 204 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 AK+L+ + + +A + Y +YF FK G+TPS Y ++ Sbjct: 205 AKELLENTDLPVIHIALELNYQEPNYFSKVFKKVVGITPSEYRKR 249 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 95/243 (39%), Gaps = 15/243 (6%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP-VCPSKLRIVDIDKKTCLSFFI 63 V +++++ + +L I+ + K+R + + Sbjct: 32 ELVYLFSGECNILVSHTIYRMVPGTLVIIPPGEIHKTSYGSNDKVRQQRTALRFSIKDTD 91 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPL------SLVFSLFEGIKIADSHSL-----WLKERL 112 + + L F D E P +L+ + ++ D S+ +E + Sbjct: 92 WLCSALGKDFVKDNLTAGIIEVPDKRKEYIENLITRMIYENQMPDELSMGMVKTLFQEFM 151 Query: 113 CISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 L S + + N+ + + N ++Q +L D+A+ S S + K+ Sbjct: 152 IFVLRCKLYGDTSAHE--IDAQNSTIQDVATYVYNNYDKQIYLDDVAKQFSISRSYLSKK 209 Query: 173 LRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G F E L + R++ A +L+ ++SI +A CG+N ++YF AF+ G++P+ Sbjct: 210 FKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDIAFACGFNDSNYFGDAFRRIKGISPN 269 Query: 232 HYF 234 Y Sbjct: 270 KYR 272 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 82/202 (40%), Gaps = 16/202 (7%) Query: 40 ELPVCPSKLRIVDIDKK-TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI 98 L + R V+I S++ + LP + K L + Sbjct: 147 HLVGEAPQRREVEIWLSHDEPSYYHHYKDRLPIELVYGKTRDQIRFPGD-----YLDRPL 201 Query: 99 KIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDI 158 +A+ + C L +++RE + + ++ + + L+++ Sbjct: 202 LMANPSAAQQAVLFCERELEDYRQREEAD---------WVRQVRRAMVKQEGGYYSLEEV 252 Query: 159 AELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 A +++ S +K+RL++ G ++ IL++ R+ A L+ ++ VA + GY + F Sbjct: 253 AAVLHLSVRTLKRRLKEHGANYHRILKEARLERAVALLKEGE-TVQTVAFQLGYQDPANF 311 Query: 219 ICAFKDYYGVTPSHYFEKIIGV 240 AF+ + G +PS Y ++ + Sbjct: 312 TRAFRRWTGCSPSDYRQQWLSS 333 >UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SBA6_9FIRM Length = 286 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 2/171 (1%) Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 + +LP + + ++ + + + +++ + + L + + A+ ++ Sbjct: 102 KLAAQLPFTDDAPVH-HTSDPDGMRAALTNIYSSRGLQPQDEAAMVGYLYLFIAALMRET 160 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTE 182 + ++ + + I FN + D+A+ + S S + + + G S + Sbjct: 161 SAGKPHTASSSSQYVLNAIKYIQFNYSHDISIDDVAKSVGVSRSHLYRVFMLNVGKSPID 220 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 L + R+ A KL+ + + SI VA G+ YF FK GV PS Y Sbjct: 221 YLTEYRINEACKLLRAGNLSIAEVAVSVGFFDQFYFSRVFKRAKGVPPSKY 271 >UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQL5_9FIRM Length = 290 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 10/249 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVD----IDKKT 57 Y + + I++ + K I+ + L+ K+ Sbjct: 41 SYYEIYYLLSGQCRMFIDQDIYYLKPGDAVIIPPLQIHR-ALYEEGLQAERYDMYFTKEE 99 Query: 58 CLSFFIDVNNE-LPGKFTLDKNGYIAEEEPPLS-LVFSLFEGIKIADSHSLWLKERLCIS 115 +F E F + P + L+ L D++S ++ L Sbjct: 100 ADAFHASCGREGFERVFLNPRIAIPQPLRPGIEGLLSHLSHENGQEDAYSHVQQQSLLFQ 159 Query: 116 LLAMFKKRESVNSF--ILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 +L + + + L + K I+ L +A + S + ++ Sbjct: 160 ILVLIGRCQDTQQEKDSLNDSEAAIVKAARYINLQYREHLTLDAMAAMSNMSPTYFSRKF 219 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 R G F E + R++ A L+ + ++ +A CG++ +YF FK G++P Sbjct: 220 RASTGFCFKEYVNYIRVQKASDLLRNTDGTVTSIAIACGFSDGNYFGDVFKKLTGLSPRE 279 Query: 233 YFEKIIGVT 241 Y I G T Sbjct: 280 YRNGIRGDT 288 >UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_9BACE Length = 1382 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRD- 175 + K+ + + N F +IT II N+ + + + IA+ + S S + ++++ Sbjct: 1260 STHLKQSIIKESLNKIDNEFIERITRIIEENLMDEKIDVPTIAQELSMSYSSLYRKIKAL 1319 Query: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G S E +R R+R A++L+ S Y+I+ +A + G NS SYF FK+ YG++PS Y + Sbjct: 1320 TGMSTGEFIRKLRLRKAEQLLLSGKYNISEIAHQVGLNSVSYFRECFKEEYGMSPSEYIK 1379 Query: 236 KI 237 ++ Sbjct: 1380 QL 1381 >UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coprococcus RepID=A8SQD4_9FIRM Length = 300 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 80/244 (32%), Gaps = 10/244 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + + I+ + + + S+FI S + + + + Sbjct: 38 DEMEIIYVRKGPLTVEIDGQKFTGEDGSVFIASPGVLHMMSAPDTPVDYFTFIFPLEFIS 97 Query: 62 FIDVNNELPGKF--TLDKNGYIAEEEPPLSLVFSLFEGIKIA-------DSHSLWLKERL 112 F + F + E L+ L + +H Sbjct: 98 FQTKDALEDEVFFPLRNHTRGFRPEVADRKLLGKLIPILDELVEENGKMGTHRQIQVRIR 157 Query: 113 CISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 + ++ + + + +I I N L +++E + SE + + Sbjct: 158 LLQMMDLLVEYSQLEELTRNASGELEKEILLYIQDNYHDNIGLAELSEHFHLSEKYMSRL 217 Query: 173 LRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + + T+ + R+RYA+ L+ S S+ +A K GY + SYFI F G +P Sbjct: 218 FSERFHMTLTQYVNYVRLRYARHLLESTDLSVTEIAMKSGYQNVSYFIRRFSSAMGESPL 277 Query: 232 HYFE 235 Y Sbjct: 278 RYRN 281 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 20/199 (10%) Query: 50 IVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 ++ + + N P KF +N I +E +L+ S + + Sbjct: 167 EIEFEAPPYAQHYQQAFN-CPVKFGRSRNALIFRKE---ALLLPSIYANPATHSEIVSIC 222 Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIE-RQWHLKDIAELIYTSESL 168 R +L+ + T ++ II+ ++ R+ L + A+ + SE Sbjct: 223 NRELTTLV---------------GATSLTERVKQIITPMLQGREVGLTETAKQLGLSEWT 267 Query: 169 IKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 +++RL+ EG F ++L +TR + A+ + + +I +A G++S + F AFK ++GV Sbjct: 268 LQRRLKKEGVQFQQVLDETRKQIAETYLKATDLTIGEIAYLLGFSSPAAFHRAFKRWFGV 327 Query: 229 TPSHYFEKIIGVTDGINKT 247 P + ++ N Sbjct: 328 NPKPFKDQHASGRTDENTA 346 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 6/209 (2%) Query: 33 VSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVF 92 V + ++ P +L + I + + + F + + A + L+ Sbjct: 90 VDGHLSFDVLDIPHEL--LTIAHELLIEKLQTEHQPGEHPFRIVYSNDFAARKEVFDLLR 147 Query: 93 SLFEGIK---IADSHSLWLKERLCISLLAMFKKRESVNSFILTNIN-TFTCKITGIISFN 148 K + + + LL+ F + I + + K+ ++ Sbjct: 148 FTLSQEKKGIFENEEKENIATYALLLLLSGFIHDTAFAGIISRSAKLSVKYKVYNLLYTE 207 Query: 149 IERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 ++QW L D++ I+ S S +K++L EGT+F+E+ RM A KL+ + YS+ VA Sbjct: 208 PDKQWKLDDVSSAIFMSASTLKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAV 267 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 CGY+S SYFI FK + +TPS + + + Sbjct: 268 LCGYDSVSYFIACFKRQFNITPSAFMKSV 296 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 10/161 (6%) Query: 78 NGYIAEEEPPLSLVFS---LFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI 134 I +P LVFS L + +AD + L C L + Sbjct: 180 PCEIQFNQPFNRLVFSENFLALPLIMADPLAARLAREQCKHDLNKLAAKRG-------EK 232 Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKK 194 + T + ++ +E + +KD+AE ++ +E ++++L EG +F +L R R+AKK Sbjct: 233 HPLTALVRELLFDEVEGFFKMKDVAEKLHLTERTLQRQLAKEGVTFQILLDQVRERHAKK 292 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 L+ + YSI+ +++K GY+ ++F AFK + TP Y Sbjct: 293 LLNHHEYSISYISEKLGYSEVTHFTRAFKRWTNQTPKQYRN 333 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 21/199 (10%) Query: 37 IRRELPVCPSKLRIVDIDKKT--CLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSL 94 ++REL LR+V+ ++ + + +P +F N +E+ L Sbjct: 150 LQRELFGVSLPLRVVEFAFAPNAPMAQYEAMFGCIP-QFNASVNRATFDEQW-------L 201 Query: 95 FEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWH 154 + A+ HS E +LL+ +R V + + + ++ Sbjct: 202 NLPLPKANEHSARFCETQLENLLSRRMQRGGV-----------SAWLRNKLLADLSSSPS 250 Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 L IA + +E +++RL DEGTS+ ++L + R A++L++S S++ V+ + GY+S Sbjct: 251 LAQIATDHFMTERTLRRRLTDEGTSYRDLLAEVRQTMAEELLSSTGLSVSEVSARLGYSS 310 Query: 215 TSYFICAFKDYYGVTPSHY 233 S FI AF+ ++ +P + Sbjct: 311 PSAFIHAFQKWHNCSPRQF 329 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Query: 95 FEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWH 154 + IK + + E LL V F K+ +I +++W Sbjct: 131 LQAIKEPQATPDLVAEHRVCELLQWLANAGYV--FRSNERADIQRKVRLLIGAEPDKKWS 188 Query: 155 LKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNS 214 +DIAE + SE+ ++++L EG +F+EIL D RM A L+ S +I +A + GY S Sbjct: 189 SQDIAESLALSEATLRRKLAKEGNAFSEILVDVRMSLALSLLQSTDAAIASIAYQVGYES 248 Query: 215 TSYFICAFKDYYGVTPSHYFE 235 S F FK +G +P+ Sbjct: 249 ASRFSVRFKQRFGFSPTAIRN 269 >UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRN2_ALIAD Length = 274 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 2/167 (1%) Query: 71 GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFI 130 ++ +A E + L L E + L + L +L F K + Sbjct: 107 NHRPRKRHLRLALHENCVYLWRQLIEEYRRPGKPDEELCDYLLRALCLTFDK-YGYDPKR 165 Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRM 189 T + +I I + L DIA+ + S S + ++ G + + L++ R+ Sbjct: 166 ATPVPIAAERIRAYIERHAAEDLSLSDIADAVGLSVSRVVHIFKEAYGQTVVQYLQNVRL 225 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + A + ++ ++ +A +CG++S SYF F+ YG++P + ++ Sbjct: 226 QMACDRMRFSNLNLEEIADRCGFHSYSYFYRVFRQKYGISPREFRQR 272 >UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWY8_9BACL Length = 293 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 83/252 (32%), Gaps = 14/252 (5%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC-----PSKLRIVDIDKKTCLSFF 62 + I ++ L ++ + + P + +V+ + + Sbjct: 40 YLVSGERCYFIKDQIYRIGAGDLVLIPVNVLHKTSPSGKLSQPHERILVNFRTEVVSALL 99 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPL--SLVFSLFEGIKIA----DSHSLWLKERLCISL 116 EL F ++ EE L L+ + K + + L L ++L Sbjct: 100 PGREEELEQLFAKYPVLRLSAEEQQLVQQLLARMLAEQKQQAGGYEEYCQLLLAELLLNL 159 Query: 117 LAMFKKRESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL- 173 L M R + + + ++ I+ + + L D+A + S + Sbjct: 160 LRMANARPNHDGEEGGGKRPYREIAEVARYINAHYDENLSLSDLANRFHLSPYYLSHLFP 219 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 R G + + R+ A L+ + +A + GY S ++F FK V+P Y Sbjct: 220 RVTGLTLVAYINRVRIEEACALLRETELPVTEIAYRVGYQSGTHFGRVFKKAKAVSPQSY 279 Query: 234 FEKIIGVTDGIN 245 + ++ G Sbjct: 280 RREQRMLSGGAG 291 >UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 Tax=Enterococcus faecium RepID=C9BAM1_ENTFC Length = 483 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 6/190 (3%) Query: 49 RIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLV-FSLFEGIKIADSHSLW 107 + +++ +K FF + + ++ E L+ E ++ + Sbjct: 294 KQLEVAQKMITDFFEQFQLAAMMPEDIRYSSFLLFMEIQRELIDLEDEEYLQGIEKIHQA 353 Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 + LL F K+ N+ K+ I+ + + LK+++E ++ + Sbjct: 354 KTVQELQQLLLSFIKKHQRQKKYSDNV----EKVIVILHQHYQEPLTLKEVSENLHLNVM 409 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + + + E SF+ L RM AK+L+ ++ +IN +A + GYN+T+YF FK Sbjct: 410 YLGQLFKKETKKSFSAYLNHLRMEKAKQLLLHSNQNINEIASEIGYNNTTYFSKLFKKIV 469 Query: 227 GVTPSHYFEK 236 G +P Y E Sbjct: 470 GRSPKEYREN 479 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 56/99 (56%) Query: 137 FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLI 196 + + I+ ++ +W LK +A+ + SE ++++L+DEG +F ++L + R+R A+ + Sbjct: 219 LSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTAESYL 278 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 ++ S+ + G++ S+F FK Y G PS Y + Sbjct: 279 LNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQYRK 317 >UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJL7_CALS8 Length = 291 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 81 IAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCK 140 I ++ + F + D L + + ++ + K + I + + K Sbjct: 126 IKDQPLDIEAARRSFFNLTHIDHEKL----QSVLDMMHIVAKYILDSEMIRISSLSSIEK 181 Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSN 199 I I + L D+A+++Y S + + + + G +F E L + R++ +K+LI + Sbjct: 182 IIEYIKNHYMEDITLDDLAKMVYLSPTYLSYLFKKQLGITFKEYLINIRLKKSKELIETT 241 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 SI +++ G +YF FK +GV+P +Y + Sbjct: 242 DLSIGEISKMVGIEDQNYFSRLFKKKFGVSPLNYKK 277 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 3/164 (1%) Query: 79 GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFT 138 + E L EG+ + LKE L I + + R S+++ + Sbjct: 374 HLLREMRELHMLPREQEEGLWKRLREPMSLKELLSIIVSLIEHARSSLSA--KKSTELLM 431 Query: 139 CKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLIT 197 I ++ R + ++DIA+ + S S ++ G +F E L RM AK L+ Sbjct: 432 MSAQNYIQNHLGRDFGIEDIADYLGISSSYFCLLFKNHFGETFVEYLTKQRMEMAKCLLR 491 Query: 198 SNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVT 241 ++ SI + GY YF F+ Y G+TPS Y +K V+ Sbjct: 492 TSERSIAQIGSSIGYQERRYFTKVFQKYTGMTPSDYRQKESNVS 535 >UniRef50_C3RI67 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RI67_9MOLU Length = 263 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 10/235 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + SF+L +N L +++ L + +I+ + T Sbjct: 37 DEIELIYCNQGSFELSVNGEKKFVNTKQLVLINSNSIHRLRFLEDQTKIITLLLSTE--- 93 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 D + +F L I ++E L+ L + + D +L + R+ + + Sbjct: 94 LFDEFKLVQCEFDL---SLIKDQEQLEQLIIYLGDHL---DQETLVIHNRMMQIYELLLE 147 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 + I +I I + + + L +A + SE + + ++ G + Sbjct: 148 ECSVYKLAITKKKLPIIKQIVTYIEQHYDDELSLTILANHFHFSEVYLSRMFKEKTGITL 207 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R+ +A + + S +IN +A G+ + F FK+YY PS Y + Sbjct: 208 LSYINKIRLNHAYNDLMNTSLTINEIALNHGFKNVKAFNKIFKEYYHDIPSKYRK 262 >UniRef50_UPI0001789626 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789626 Length = 305 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 18/230 (7%) Query: 20 RRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDI----DKKTCLSFFIDVNNELPGK 72 + + KK ++ + L V + ++ V+ + S V E Sbjct: 60 EKSVILKKGEFMVLDAGVPHRLIVDQAASCRMLNVEFGFMESEGMAPSLRHIVGEEEEVS 119 Query: 73 FTLDKN---GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA----MFKKRES 125 F L + +A++E ++ SL + + + L I LL ++++RE Sbjct: 120 FLLKRPFRYLVLADQEEVYPVLKSLVLELDQRGTDGRMMTHALFIQLLVCIARLYEERER 179 Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEIL 184 + + + + + + N +RQ +KD+A + + + R G + TE L Sbjct: 180 SD---MQQSDFYIKRSVDYLHQNYDRQIQVKDVAAEVNLHPGYLHRVFRRGTGRTITEYL 236 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 RM AK L+ I+ ++ G S YF FK Y G TP Y Sbjct: 237 TTIRMEKAKMLLEQTDIPIHEISDYVGVGSRQYFHMLFKKYTGSTPVEYR 286 >UniRef50_P77396 Uncharacterized HTH-type transcriptional regulator ypdC n=61 Tax=Enterobacteriaceae RepID=YPDC_ECOLI Length = 285 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 87/237 (36%), Gaps = 9/237 (3%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC---LSFFID 64 + + + ++ + + + + LPV + ++ + LSF+ Sbjct: 53 IVLRGEYGNLLEAKQQRLVEGEMLFI-PARAANLPVNNKPVMLLSLVFAPTWLGLSFYDS 111 Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRE 124 L + + + + + + + + + L +SLL + + Sbjct: 112 RTTSL--LHPARQIQLPSLQRGEGEAMLTALTHLSRS-PLEQNIIQPLVLSLLHLCRSVV 168 Query: 125 SVNSFILTNINTFTC-KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT-SFTE 182 ++ F I + N + + +A+ + + + K GT F E Sbjct: 169 NMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIE 228 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 +R RM A+ ++ SI+ VAQ+CG+ + YF F+ +G+TP Y + G Sbjct: 229 YVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG 285 >UniRef50_C2L0L9 Response regulator receiver protein n=2 Tax=Lachnospiraceae RepID=C2L0L9_9FIRM Length = 541 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 15 DLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFT 74 ++I R++ ++ +++ + + + R+ + F +D+ + KF Sbjct: 320 EIIDEERLLDIYRSIRMSSEEELDKCIDLYIENSRLDSPSLQEYHFFLMDLVTNM-HKFL 378 Query: 75 LDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI 134 L P V+ + +A+ S W+KE + + + R Sbjct: 379 LANQVDTGLIFPKEEDVYQKVQQFSLAE-LSQWMKEICKKMQIIIQEMR-------SDKT 430 Query: 135 NTFTCKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYA 192 +F K + + ++ ++ +++ ++ S + + E G SF L D RM A Sbjct: 431 KSFVKKAVEHVHSHYMDKDLTVEALSQELHVSAAYFSTIFKRETGKSFINYLTDYRMEKA 490 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 +L+ ++A+ GY+ +YF AFK +G++PS Y G Sbjct: 491 LRLLMEEEEKTYIIAEAVGYSDPNYFSYAFKKKFGMSPSKYKSNSKG 537 >UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SQN1_9FIRM Length = 294 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 16/249 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 ++ + ++ ++ ++ + I+ + + + F Sbjct: 43 FMEIIYIKKGKGNVTVDFTTHYVEEGDIIIILPGHIHGISQHEGYSMEYENILFSVDMFR 102 Query: 63 IDVNNELPGKFTLD--------KNGYIAEEE--PPLSLVFSLFEGI--KIADSHSLWLKE 110 ++ L +F L K+ Y ++ P LS + + + + + L LK Sbjct: 103 SKNHDSLDSEFFLPLLAGDVDIKSIYDKDDPLYPQLSSCLNRVDKLCSETPKGYHLALKG 162 Query: 111 RLCISLLAMFKK---RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 +F R+ + + T I I N + + DIA SES Sbjct: 163 CYFEFFYVLFTNSTVRDEADRKNRSRDLERTKLILSYIDENYKEAISITDIASYCGFSES 222 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + ++ G SF L D R+ A +L+++N S+ VA+ CG+ + SYF FK Y Sbjct: 223 HFMRFFKNTMGVSFVSYLNDFRLNVAARLLSTNDDSVLSVAENCGFFNLSYFNRMFKKKY 282 Query: 227 GVTPSHYFE 235 GVTPS Y E Sbjct: 283 GVTPSRYRE 291 >UniRef50_A1HM14 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM14_9FIRM Length = 247 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 138 TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLI 196 ++ ++ +L D A ++ + S + + + E F + + D +M+ AK+L+ Sbjct: 141 IQQVLRYMAETPLGDINLTDAARRVHMNPSYLSQLFKQEMQVCFVDYVTDLKMKEAKRLL 200 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 + + I+ +A + GY +YF FK + +PS Y ++ G Sbjct: 201 ATTTLRISEIADRLGYADLAYFSNIFKKHTACSPSEYRKQQARTGRG 247 >UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUC8_9CLOT Length = 479 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTSFTEILRDTRMRYA 192 + K +I + + L +AE + + + + ++ SF + L RM A Sbjct: 372 YSPLIQKALHVIDKSYKEPISLNSVAEQLNITPQYLSRLFMKEMSRSFVDYLTSYRMERA 431 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 K L+ + IN++ + GY YF FK GVTP+ Y Sbjct: 432 KSLLQDTNMKINMICVQVGYQDAKYFCTLFKKITGVTPNQYR 473 >UniRef50_C4G4F0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G4F0_ABIDE Length = 512 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 2/165 (1%) Query: 75 LDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI 134 G EE + L E I + +S ++++ E ++L++ F K+ N I Sbjct: 346 YYHAGEELLEEGDKAKYSELMEKIFVGNSENIYIIEEQILTLISEFTKKTESNIGI-RRY 404 Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAK 193 + T KI I+ N + Q + +++ ++ S + I + GT+ + + + R+ AK Sbjct: 405 SETTTKILSYINDNYKSQAIVSELSSKLFFSRNYISALFKKDTGTTISRYITEVRLCKAK 464 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 +L+ S SI+ +A GY S+F FK+ YG +P Y +K Sbjct: 465 QLLLGTSLSISEIALDTGYFDISHFSRVFKEEYGDSPLEYRKKYT 509 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 6/156 (3%) Query: 90 LVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNI 149 L +F + S L K ++ + L +R T + +I I + Sbjct: 363 LNEQIFSVNDCSSSEELLEKVKVILQELTREDQRTG-----ETGSSRIVQEIKRYIQEHY 417 Query: 150 ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 +L +A+ +Y S + + E G ++T L RM +AKK + I VA+ Sbjct: 418 AENINLNALADQVYLSPKYLSDLFKRETGENYTSYLLYVRMEHAKKYLMQFDLKIYEVAE 477 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGI 244 GY S FI FK GVTP Y ++ Sbjct: 478 LTGYASPKQFIRVFKKEVGVTPGEYRNQVGNGKQAP 513 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 8/146 (5%) Query: 92 FSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER 151 F E + A++ + L + + L + +K E + N ++ I + Sbjct: 381 FKAIEESRNANTAAELLTAFIGEAKLCIAEKAEQ-------SGNANMKRLLDYIHEHYAE 433 Query: 152 QWHLKDIAELIYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 +L ++A+ + + S + F + L R+ A +L+ + SI+ ++ Sbjct: 434 SLNLTEMAKHFHFNPSYLSSYFSTHHNEGFVDYLHRVRLEKASELLRAGEASISEISGMV 493 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFEK 236 GY+ SYF FK + G++PS Y ++ Sbjct: 494 GYSDHSYFCKVFKKHTGLSPSRYRQQ 519 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%) Query: 24 SFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAE 83 + + +E P + + ++ N P + Sbjct: 51 ELTAGEFALYNSGQLKEAQAQPGENGFSALALVFSITLLQKFRNVYP---LSKIPAQQTD 107 Query: 84 EEPPLSLVFSLFEGIK------IADSHSLWLKERLCISLLAMF--KKRESVNSFILTNIN 135 S + +K + + +E L ++L+A+ K+ E +N I Sbjct: 108 TFFKFSGQHKRIDQLKDMLIEEVERKQNSQAQEHLALALMALMVEKQPELLNMIIRATQF 167 Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKL 195 + T KI I NIE + L+ +A+ + S + +K+RL E SF+++L+ R+ +A Sbjct: 168 SETQKIIQFIESNIEEEISLETLAKHMGMSTATLKRRLAAEEMSFSQLLKIKRISHAATQ 227 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + SI +A + G+ S ++F AFK +TP + K+ Sbjct: 228 LRVTDKSITTIAYESGFKSAAHFSTAFKAVQQMTPKEFRAKVQ 270 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 9 FICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNE 68 I S L ++ + P + R + + + + Sbjct: 31 IIKGSKRLFWKDEAFDILHPNIMLCEANASLNFENLPQQGRF--LSRMFSFH-CVPSDEM 87 Query: 69 LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIA-DSHSLWLKERLCISLLAMFKKRESVN 127 L + Y+ E +L +L +S S + + L +R ++ Sbjct: 88 LELSMSNALGNYVPAVETDKALQATLNALFSFERESLSEATQRYWMMGLYQQLAERGLLH 147 Query: 128 SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDT 187 ++ +F+ K++ +S + L+ +AE S + + ++L+ EGT + E+L + Sbjct: 148 RLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAERFAMSRATLIRKLKQEGTQYREVLAEV 207 Query: 188 RMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 R+ +A L+ + SY++ ++AQ CGY S F FK +G+TPS Y + ++ Sbjct: 208 RLNHALYLMQNGSYNVALLAQLCGYQSEGRFSQRFKGKFGLTPSEYIKTVVS 259 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 19/223 (8%) Query: 21 RVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF--IDVNNELPG-----KF 73 RV+S + + K+ EL S+ + +F +++N + P Sbjct: 126 RVVSIARPDMVDTEQKLHYELERLFSQWAEIGPAIGHSRHWFSRVELNYKAPPYRAMYSE 185 Query: 74 TLDKNGYIAEEEPPLSLVFSLFE-GIKIADSHSLWLKERLCISLLAMFKKRESVNSFILT 132 L E LS L + + A+ + L E+ C +LL K+ + + Sbjct: 186 VLGDPVLFEREHNQLSFPADLLDQPLSFANEAAAQLCEQQCAALLGELKRTDGIEG---- 241 Query: 133 NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYA 192 ++ I++ + + ++A + E +++RL DE T++ +++ + RM A Sbjct: 242 -------EVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELA 294 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + N+ SI +A GY S F F + G+TP+ Y Sbjct: 295 ASYLRGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRR 337 >UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8Z3_9FIRM Length = 420 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTS-FTEILRDTRMRYAKK 194 ++ I ++ + L D+A + S + + + G S F E + +TR+ AK+ Sbjct: 318 QVVAQVQEYIQSHLSERLTLADVAAVFNFSPNYLSQLFGKYGDSGFVEYITETRIAAAKE 377 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 ++ + +A+K GY S YF FK G++P Y + I Sbjct: 378 MLEQGDLKVYEIAEKLGYESAFYFSKVFKKVTGLSPREYQQSI 420 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 E L ++ A+ + + + + +I I+ L+DIAE + + + + Sbjct: 378 EELEVNFRAVLNEVLAKRTDAAGDSPRIVERIKNIVRDEYRNDIGLEDIAERVNLAPAYL 437 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + E G + + + D RM A+KL+ I +VA+ CGY + YF FK+YYG+ Sbjct: 438 SYLFKKETGANLVKYITDYRMEQARKLLEEGELKIVLVAKACGYENQPYFNRLFKNYYGM 497 Query: 229 TPSHYFEK 236 TP Y EK Sbjct: 498 TPRQYREK 505 >UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and AraC-type DNA-binding domain) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK9_ANOFW Length = 428 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTE 182 + V + + ++ + N L+++A+ ++ + K + E G +F + Sbjct: 310 DEVEQTTIKTGGSVIEQVEMFLQENYCYDVTLEEVAKYVHLTPYYFSKLFKKETGQTFID 369 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R+ AK+L+ ++ + GY +YF FK +TP+ Y + Sbjct: 370 YVTHLRIEKAKQLMRDEGLTVKEACYRVGYKDPNYFSRVFKKVTNMTPTEYRQ 422 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 74/177 (41%), Gaps = 12/177 (6%) Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF-EGIKIADSHSLWLKERLCISLLAMF 120 F ++ LP + + + + L + + + A+ + + + L Sbjct: 182 FPQPSSRLPEGLSPGLSLHFDQVVNELRFPIEMMRQPLPKANPELVSAAQEQMEAELVRL 241 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 R V + I + ++ L+ +AE ++ S +K+RL+ GTS+ Sbjct: 242 NVRNDVAGMVRLQIQDWEGRL-----------PTLEQVAEQLHMSPRTLKRRLQTAGTSY 290 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 +I +R R A + + S+ +A+ GY+ S F AFK + +TPS + +++ Sbjct: 291 QQIKDSSRFRRAIHQLEATDSSLESIAELLGYSDASNFTKAFKSWAEMTPSEFRQRL 347 >UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobia RepID=B9XAQ1_9BACT Length = 326 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 109 KERLCISLLAMFKKRESV--NSFILTNIN---TFTCKITGIISFNIERQWHLKDIAELIY 163 + +SLL +F + S+ N ++ N + I N L ++A+ + Sbjct: 190 QHEAIVSLLEIFAQHISLVSNWVLVQERNAEPPVIARAKRYIEDNQAEDLTLSEVAKAVN 249 Query: 164 TSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 TS K + G FTE + R+ AK L+ + + ++ VA + G+ S ++F F Sbjct: 250 TSTFYFCKMFKKATGLHFTEYVSRVRIEKAKNLLLNPNLRVSEVAFEVGFQSLTHFNRVF 309 Query: 223 KDYYGVTPSHYFEKI 237 K G +P+ Y E++ Sbjct: 310 KKIVGQSPTEYREQL 324 >UniRef50_C4L2Y3 Two component transcriptional regulator, AraC family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2Y3_EXISA Length = 236 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTE 182 ++ + + +I I + + L+ ++E Y S I +R + + G + +E Sbjct: 118 RALADVVKESSEDPIAQIGTYIEQHFAEELSLQGMSERFYLSREYISRRFKQQYGVNLSE 177 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + RM AK+L+ ++ I VAQ G++ YF FK GVTP+ + E++ Sbjct: 178 YVLTIRMNEAKRLLETSRQRIYEVAQAVGFSDDKYFRKVFKKQVGVTPNEFREQVQ 233 >UniRef50_C6IZZ6 Transcriptional regulator n=2 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZZ6_9BACL Length = 776 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 68/168 (40%), Gaps = 8/168 (4%) Query: 72 KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFIL 131 TL + GY + F I+ + + ++++ + + ++ + Sbjct: 615 MHTLLETGYQPHQLYEGDNPFEQLNQIREPEQIVRFFQQKIILPYAQKLSEDQTARA--- 671 Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMR 190 ++T ++ L+ A T+ + + + G +F + + R+ Sbjct: 672 ---KPLIEQVTAMLKDQFAAGISLEACAHHFNTTPYTLSRLFKQVTGINFIDYVTALRIE 728 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 AK+L+ + +N +A++ G SYFI FK + +TP Y EK++ Sbjct: 729 KAKELLRDSDMKVNEIAEQVGLQ-PSYFIRLFKRFEQITPGQYREKVM 775 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 73/177 (41%), Gaps = 7/177 (3%) Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 F+ +N+ L + G + + + + + + W K + + Sbjct: 329 FLVINHSLALDQISEVLGLFSHQGKSAESLLQTIDQLPGSMELKSWFKAACQDFETRLDR 388 Query: 122 KRESVNSFILTNINTFTCKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 ++ N ++ + + I + + +K +AE I+ + S + + E G + Sbjct: 389 WKQQANPYVNS-----IQQAIDYIEEHYLDSDLSIKQVAENIHLNPSYLSTLFKKETGET 443 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 FT + +++ A+ L+ + I+ + Q G+ ++YF FK ++ ++PS + + Sbjct: 444 FTGYVNKLKLQKAQVLLRNTDMKISEICQTVGFEDSTYFSSVFKKHFQISPSEFRQN 500 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 96 EGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQ-WH 154 +KIA L + L ++++K +S + ++ + + + Sbjct: 262 THLKIAAEVYLAEGAGDVLELPSVYRKAKSAVNKENA-VSPLVRRAKQYMLEHFSNSGLT 320 Query: 155 LKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYN 213 L+ +A+ + TS + + + ++ E GT+F L R+R A +L+ + +I +A++ GY Sbjct: 321 LEAMAQALQTSPAYLSRMIKQELGTTFNSYLTQLRIRRASRLLIATELTIAEIAEQVGYE 380 Query: 214 STSYFICAFKDYYGVTPSHYFE 235 + YF AFK G++P Y + Sbjct: 381 TQHYFSTAFKRATGLSPLQYRK 402 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 138 TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLI 196 + KI I N + L DI+ Y S + + + E G + + + + R+ A KL+ Sbjct: 393 SDKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVFKKETGCNLMKFINEYRLEQAAKLL 452 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 +N +A+ G+++ SYF F+DYYG +P +Y +K Sbjct: 453 LETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPENYRQK 492 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 13/247 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDID------- 54 D++ S + ++I K+ LF++ ++V + Sbjct: 37 DFIEISYVEEGSGYHYVEDQLIPIKRGDLFVIPIGTSHVFRPSSQDNQLVIYNCIFRTCL 96 Query: 55 ---KKTCLSFFIDVNNELPGKFTLDKNGYIAEE-EPPLSLVFSLFEGIKIADSHSLWLKE 110 K+ + +++ L G K ++ + LS++ +F +L Sbjct: 97 LEQLKSVICESTKLHSLLYGSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRYEFLMM 156 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 I +LAM ++ E S + T N I I+ + ++ +AE + S S + Sbjct: 157 GQLIQVLAMLQRYECDGSMVSTPTNNMDDAI-QYINDHFATNLTVQQVAERSFMSPSHFQ 215 Query: 171 KRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G +F + L++ R++ +L+ S SI A + GY +F F+ GVT Sbjct: 216 RLFKKTTGVTFMQFLQNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRKKTGVT 275 Query: 230 PSHYFEK 236 P Y Sbjct: 276 PREYRRS 282 Score = 42.6 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 189 MRYAKKLITS---NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 M A + I + ++ VA++ + S S+F FK GVT + + I Sbjct: 183 MDDAIQYINDHFATNLTVQQVAERS-FMSPSHFQRLFKKTTGVTFMQFLQNIR 234 >UniRef50_A4XMF1 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMF1_CALS8 Length = 518 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 91 VFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIE 150 + + I AD+H + E ++LA+F + + I+ N + K I+ N Sbjct: 371 IEKVITEILNADAHR--ILETSKRAILALFGNAKVTHEQIIHNDS--INKAIDFINQNYN 426 Query: 151 RQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 ++ L I+ + + K + G S+ L R++ A +L+ ++S SI +A Sbjct: 427 QEISLAQISAIFNFNPYYFSKLFKKYTGVSYKTYLTKLRIQKACELLKNSSKSIKEIAFM 486 Query: 210 CGYNSTSYFICAFKDYYGVTPSHYFE 235 G++ +YFI AFK + GVTPS + Sbjct: 487 VGFSDPNYFIKAFKKFVGVTPSFFRN 512 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQ--WHLKDIAELIYTSESLIKKRL 173 L + K+ V N + +I I+ N++ + +A + TS +++RL Sbjct: 211 LPELLKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRRRL 270 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++E TSF I R A + + SIN +A K G+ S F AFK + G+TP Y Sbjct: 271 KEENTSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPGDY 330 Query: 234 FEK 236 + Sbjct: 331 RSE 333 >UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LA91_9FIRM Length = 288 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 85/243 (34%), Gaps = 17/243 (6%) Query: 11 CQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-------------KLRIVDIDKKT 57 +L + R + ++ E+ + DI + + Sbjct: 47 HGVLNLTVRGRSFTLHPGEFCFINSGELHEIKSGGPSLHHAIVFNPDILDFTLYDICQHS 106 Query: 58 CLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 + N P ++ + + L+ + S S+ + + L Sbjct: 107 FIRPVTSGNLIFPTLPSVFSPEESQMILFHMQEIIRLYHTLPSCASLSIKIHILQILELF 166 Query: 118 AMFKK--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 +++S + N K+ I N L D+A++ + S + + Sbjct: 167 FQADCFLENTISSKEKDSQNKL-KKVIEYIHENYAGPISLPDLAKICFMSPNYFCHYFKQ 225 Query: 176 E-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 E G + + R++ A +++T + ++ VA G+++ SYFI F++Y VTP+ Y Sbjct: 226 EIGKPPIAFINEYRIQKACQILTDSELPVSQVAISVGFDNFSYFIRKFREYKNVTPTEYR 285 Query: 235 EKI 237 + Sbjct: 286 SHL 288 >UniRef50_C0FZV1 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FZV1_9FIRM Length = 524 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%) Query: 92 FSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSF-ILTNINTFTCKITGIISFNIE 150 + + ++ + L LK C+ L + R+ + +T I I +++ Sbjct: 378 YQMLSRVRNQEHALLALKSVSCMEELIEEEVRKIWELVSYVEKTDTMIADIRRYIDKHLD 437 Query: 151 RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 +I+E Y S + + K R E G+S + +++ RM AK+L+ +YSI+ +A + Sbjct: 438 -SVTRSEISEEFYLSPNYLSKLFRKETGSSLSVYIQNVRMSRAKQLLLETNYSISEIATE 496 Query: 210 CGYNSTSYFICAFKDYYGVTPSHYFEKI 237 GY S ++F FK + G TP+ Y + I Sbjct: 497 TGYPSFAHFSKQFKKFVGKTPNEYRKGI 524 >UniRef50_UPI0001C3678C two component transcriptional regulator, AraC family protein n=2 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3678C Length = 539 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 105 SLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYT 164 + L + L + ++ +T I + + + D++ L++ Sbjct: 397 RVALSSHNMLQYLEYLLSKAMEYKDVVERPHTIVDTIRDYMDHHFQENLSRDDLSRLVFL 456 Query: 165 SESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 + + + + E G S + L R+ AK+L+++ ++V++ + GY++ +YF FK Sbjct: 457 NPDYLSRLFKKEMGLSISSYLIQKRIDLAKELLSTTRTPVSVISSQAGYDNFAYFTKVFK 516 Query: 224 DYYGVTPSHYFEKIIGV 240 + G++P+ Y +K Sbjct: 517 EKTGMSPNEYRKKCQSA 533 >UniRef50_UPI00017895AE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895AE Length = 353 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 2/108 (1%) Query: 138 TCKITGIISFNIE-RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKL 195 K I N L+++A+ + S + + + + E +F + L RM A++L Sbjct: 246 IQKAKRFIEENYAMEDLSLQEVADSVGMSVTYLSRTFKSETNMNFVKYLVQVRMEKAREL 305 Query: 196 ITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 + + S A + G++ +F FK ++G+TPS Y ++ + G Sbjct: 306 LAESELSAQEAAYRVGFSDYVHFSKTFKKFHGLTPSAYRKQCKAMNGG 353 >UniRef50_UPI0001789951 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789951 Length = 539 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 91 VFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIE 150 + S + D WL E +L + K R+ + + + I + E Sbjct: 391 LLSDLYSFRSLDEIERWLNEVCEQALRDVAKTRKDI-------ARSQMLEAVDFIQRHYE 443 Query: 151 -RQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 + +K + I+ S S + G +F E + + RM AK+L+ + +A Sbjct: 444 DEELSIKTVCSRIFMSTSYFSALFKSHTGKTFVEYVTEVRMEKAKELLKHSLLKTYEIAA 503 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 K GY YF FK + G TP+ Y K+ Sbjct: 504 KTGYQDPQYFSVLFKKHTGDTPTEYRNKM 532 >UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NX83_9CLOT Length = 539 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 10/181 (5%) Query: 59 LSFFIDVNNELP-GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 ++ +N ++ KF A + + + + +++E + ++ Sbjct: 364 FCQYMLINIQVGVMKFVEKMGVEKANIDRTFKDYKQQIAAVSTGEKAAEYIEELIIQAIR 423 Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQ-WHLKDIAELIYTSESLIKKRLRDE 176 N + ++ + I N + + L D+A+ + S S + E Sbjct: 424 MR-------NERLGKKHSSLITEAKEFIVKNYQEETLSLSDVADQVGLSSSHFSTTFKQE 476 Query: 177 -GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G SF E L RM AK+++ + ++ + GY YF FK G TPS Y Sbjct: 477 TGESFVEFLTSVRMDKAKEMLCFTDMKASQISYEVGYKDPHYFSYLFKKTQGCTPSEYRS 536 Query: 236 K 236 + Sbjct: 537 R 537 >UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1Q8_9BACL Length = 542 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 14/156 (8%) Query: 95 FEGIKIADSHSLWL----KERLCISLLAMFKKRESVNSFILT---------NINTFTCKI 141 F +K ++H L+ ++ L SL ++ +E V + T + +I Sbjct: 374 FLKLKGIEAHKLYAARANEQLLAQSLHSIEDMQEYVTYLVNTAMAYRDFAAEPKSVAEEI 433 Query: 142 TGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNS 200 I + + D+AE++Y + + + + E G S + R+ AK+L+ + Sbjct: 434 KQYIHAHYGDELTRNDLAEVVYLNPDYLARLFKKETGISLGSYVIQVRISVAKQLLETTK 493 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 S+ VA + GY + SYF FK GVTP+ Y + Sbjct: 494 LSVYAVANQVGYANYSYFSKLFKQEVGVTPNEYKKN 529 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 2/147 (1%) Query: 93 SLFEGIKIADSHSLWLKERLCISLLAMF-KKRESVNSFILTNINTFTCKITGIISFNIER 151 + +S L E L I LL F +K E + F+ KI +I + ER Sbjct: 167 EIIRTNNKKNSIIDRLTEVLFIQLLNSFIEKNEHLTGFLSALKEPRLNKILQLIHQHPER 226 Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 QW L I++++ S + ++++ + G S + RM A +L+ ++ S+ +A Sbjct: 227 QWTLDIISDVVGMSRATLQRKFKAAIGVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVI 286 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFEKI 237 G++ AFKD+YG TPS + +K+ Sbjct: 287 GFSDARTLSHAFKDHYGDTPSQFRKKL 313 >UniRef50_C9A6S2 Response regulator receiver n=5 Tax=Bacteria RepID=C9A6S2_ENTCA Length = 507 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 1/156 (0%) Query: 81 IAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCK 140 + EE P L A H +L++ + L + R+ + + + + Sbjct: 348 LEEEFPTAPRFSRLKAEFLHAIGHVQYLEDFSDLLLATIDDIRQQLTTLSPLDEDDLLVA 407 Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSN 199 I I N + L ++AE + S + + L SF+E ++ TR+ AK+L+T + Sbjct: 408 IQRFIQDNYTKSLSLSELAETFHFSYTYLSAFLSAKLKMSFSEYVKKTRLDKAKELLTQS 467 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 +++ +++ GY+ SYF FK VTPS Y Sbjct: 468 DLNLSEISEAVGYSDISYFSRIFKKECQVTPSKYRR 503 >UniRef50_C6CZ56 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ56_PAESJ Length = 519 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%) Query: 89 SLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFN 148 + V FE I D WL+ R ++ KR+ + N I + Sbjct: 378 AAVLFQFETI---DDILSWLRRRFFELSELLYVKRQKQKRKLFDN-------IMAFVDER 427 Query: 149 IERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVA 207 +E++ LK++A + + + ++E GT F++ L + RM ++L+ + +A Sbjct: 428 LEQKITLKEVAAHFDFTPNYLGTLFKEETGTLFSDWLNERRMDRVRELLADPCLKVYEIA 487 Query: 208 QKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 ++ GY + YF FK + G+TP Y +K Sbjct: 488 ERVGYKNIIYFNRQFKQFTGMTPGEYRKK 516 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Query: 97 GIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLK 156 + +K+ + L+ + I + I ++ LK Sbjct: 123 HVSEQKERERVMKQLIDDKLINALDRHPQTREPI--------REAIQFIDQRLKDDISLK 174 Query: 157 DIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNST 215 D+AE ++ + S +++ +F+E L RM+ AK+L+ + ++ +A++CGY + Sbjct: 175 DVAEHVHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYRTA 234 Query: 216 SYFICAFKDYYGVTPSHYFEKIIG 239 YFI FK+ G TPS Y + G Sbjct: 235 KYFIHLFKEMEGKTPSSYRKSQKG 258 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 10/228 (4%) Query: 19 NRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF-----FIDVNNELPGKF 73 N KKN + ++ + + + ++ + I + F + + L Sbjct: 42 NDESFHSKKNEILVILPS--QRITLNCKDIKEIKIMEIRKRCFEHPCSLLSNKDYLRYIS 99 Query: 74 TLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR--ESVNSFIL 131 L K I ++ SLF+ +K D + C ++L +S Sbjct: 100 GLSKIHAIPATMESINQFHSLFDKMKRTDEVVCDIDIIECSNILVSLLIEVFKSCKKTQQ 159 Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRY 191 + I + K+ I +W L +A+ +Y SES +K++L+ E +FTE+ RM + Sbjct: 160 SPIGVISRKVLEKIIECPYERWSLSMMAKELYMSESTLKRKLKSEDQTFTELYNFARMSH 219 Query: 192 AKKLITSN-SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 AKKL+ SN I VA+ CG+N SYF+ FK Y+G++P Y + + Sbjct: 220 AKKLLLSNRDIKIATVAEMCGFNHVSYFVSCFKKYFGLSPLVYKKSLC 267 >UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VID9_9CLOT Length = 289 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 11/246 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC-LS 60 D + + I+ K F+VS + + +S Sbjct: 38 DEFEIIYVKSGFLTVNISGENYIGKPGDAFVVSPGNLHFMGSKTGTVDYFTFLFPLKYIS 97 Query: 61 FFIDV---NNELPGKFTLDKNGYIAEEEPPLSLVFSLFE--GIKIADSHSLWLKERLCIS 115 F+ D + L + + ++ L L E K ++ + Sbjct: 98 FYTDDILDDRLLEPLDSGRLMISPSVKDTIKELCEQLIEIYEAKKSERELNITTQIKTKI 157 Query: 116 LLAMFKKRESVNSFILTN----INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 +L F FI+ N N ++ I N + LK+ E + SE I + Sbjct: 158 ILLQFILEMWEKGFIVENNTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISR 217 Query: 172 RLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 ++ + ++ + R+ YAK+L+ S+ A + GY + SYFI +FK YGV+P Sbjct: 218 YFKEHFHITLSQYVAYLRLEYAKQLLQDTDISVTEAAMRSGYQNISYFIRSFKKTYGVSP 277 Query: 231 SHYFEK 236 Y +K Sbjct: 278 LKYRKK 283 >UniRef50_Q0ST06 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=Q0ST06_CLOPS Length = 686 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 9/254 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-KLRIVDIDKKTCLS 60 D + + + S + I+ +++ + IV+ + + ++ I ID Sbjct: 30 DAIEILYVLKGSIKVDIDTDSYEIQEDEIEIVNTEQTHRIYSNKDNRVLIFKIDPHFFEK 89 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF--EGIKIADSHSLWLKERLCISLLA 118 ++ D+ N T D+ E L + S+ E + D + ++++ L L Sbjct: 90 YYSDIENMFFYTNTSDEGAQSDESYDKLRVFLSIILCEEAQKVDDYDKYIEKSLVELLFH 149 Query: 119 MFKKRESV---NSFILTNINTFTC--KITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + + N I N +I+ I N + LKDIA + S + + Sbjct: 150 LLNNFHYLLYDNDEIHENNMLLERYHRISKYIYNNYNKNITLKDIANTEFLSTHYLSHEI 209 Query: 174 R-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + G SFT++L TR+ + KL+ S++ ++ + G++ T YF FK YY TP Sbjct: 210 KYATGLSFTDLLNLTRVEESVKLLLDTDKSLSEISYEIGFSHTRYFNKHFKAYYNCTPLQ 269 Query: 233 YFEKIIGVTDGINK 246 + +K + NK Sbjct: 270 FRKKHKISEEEYNK 283 >UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NUZ5_BACSE Length = 305 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 L L + L +S+ T N KI I+ N R L +IAE+ + Sbjct: 171 LDLLQALAVSVPRRMLASPCYYEKFPTAGNKRIDKIISFINSNYTRSLKLDEIAEMANMN 230 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 S + +D G +F + + D R+ YA KL+T I+ +A +CG++S +F FK Sbjct: 231 SSAFCRFFKDATGKTFLQYVADMRIGYACKLLTIGDMEISQIAVECGFDSIPHFNRTFKQ 290 Query: 225 YYGVTPSHYFEKII 238 G+TP+ Y +I+ Sbjct: 291 LTGLTPTQYRNQIM 304 >UniRef50_A4XMI3 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMI3_CALS8 Length = 251 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTSFT 181 RE+ ++ I + ++ + +Q L D+A ++ + + L + G +F Sbjct: 127 RENEDTLIENCDGDVIKSVFDYLNKHYAQQITLNDVANYVHLHPVYLGRLLRKKVGKTFK 186 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 EIL + R++ A L+ ++S VA+ G++ YF FK YG+TP+ + + Sbjct: 187 EILTEVRLKKAISLLKNSSLKNYEVAEAVGFSDAQYFSQVFKKIYGITPNEWKK 240 >UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D174_PAESJ Length = 281 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 1/161 (0%) Query: 80 YIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTC 139 ++ + P +L+ L E + + + LL + S + + Sbjct: 121 HLPDLAPVEALMERLLELGRSYEVDDEYAAASTLYELLTRIQTTASQLNVSVHQTADKIR 180 Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 + N + + L+ A + S ++ G SF++ L + R+ AK+L+ S Sbjct: 181 AAANYVRANCNQPFTLEQAAAIAGYSSHYFSRKFNQTFGKSFSDFLTEARILRAKQLLAS 240 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 S+ ++A + G++ TSYF F+D G+TP + E+ Sbjct: 241 TRLSVKLIALETGFSQTSYFSKCFRDQEGMTPLQFRERHQA 281 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTE 182 ++ + T+ + + + L D+A+ I S + K ++ +F+E Sbjct: 403 RTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSE 462 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 + R+ +AK+L++ S+ + + GY +YF FK G +PS Y + I G+ Sbjct: 463 YVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRKSINGL 520 >UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 Tax=Faecalibacterium prausnitzii RepID=C7H973_9FIRM Length = 271 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 2/130 (1%) Query: 112 LCISLLAMFKKRE-SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 + ++L+ + ++E + N +I ++ N ++++ L D+A Y S + Sbjct: 142 IYLTLILHYVEQECRSEKQDIRPRNETVEQICAYLAANYQQKFSLTDVAARFYLSPYYLS 201 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + R G S + + R+ A++L+ S +I+ VA++ G+ S ++F F++ G Sbjct: 202 RLFRRVTGQSIVDYINGRRIEAAQRLLESTDLNISAVAEQTGFASAAHFRRVFRETMGTG 261 Query: 230 PSHYFEKIIG 239 P Y + G Sbjct: 262 PLQYRKSHRG 271 >UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35ADD Length = 304 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 9/242 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV----CPSKLRIVDIDKKTCL 59 + + D IN + S+ +++ L ++ +I I Sbjct: 38 IEIDYLLDCEADFYINGKKKQVAAGSITLINSGDIHALEPREVPVDTEDKIHGISLFISY 97 Query: 60 SFFIDV---NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSL-WLKERLCIS 115 F + +++ + + +E SL+ + + L Sbjct: 98 EFLKKICPEIDQITFELEGQEERLKELKEVFNSLIRLELAPPEEYGYLKKNAMLHSLMYL 157 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 LL FK+ + +S + + N L+ +A+ S + + L+ Sbjct: 158 LLTYFKEPRNQSSVKSQKYIDRLRVVLDYVEENYREPLTLQGVADHFSVSMEYLARILKK 217 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G +F L R+ A + + YS+ +A + G++ T I F+D YG+TPS Y Sbjct: 218 YTGNTFKTHLNQVRVSKAFRDLLETDYSVLEIAMRNGFSDTRSLINVFRDTYGMTPSQYR 277 Query: 235 EK 236 +K Sbjct: 278 KK 279 >UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=Klebsiella RepID=B5XY24_KLEP3 Length = 277 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 4/155 (2%) Query: 90 LVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNI 149 L+ SL E D + L + +LL+ +++ ++ + + N+ Sbjct: 126 LLLSLNEVSLQPDPLTARL---VVAALLSHCREQLVGLEMRVSRSRDLFLAVQDYLEENL 182 Query: 150 ERQWHLKDIAELIYTSESLIKKRLRDEG-TSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 + +A+ + + + + + G F E L R+ AK+L+ + +A Sbjct: 183 SLPLTRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEIAH 242 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 CG+ ++YF FK Y +PS Y Sbjct: 243 NCGFVDSNYFCRVFKRYTERSPSEYRRHCRSAQQA 277 >UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65NG7_BACLD Length = 400 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 133 NINTFTCKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMR 190 NI+ + + + ER++ LK +A+ + S + + ++ E G +F ++L + RM Sbjct: 285 NISPVVIRAKEYMQKHFTEREFSLKQMADALQVSSVYLSRMMKKELGVTFVQLLTEMRMD 344 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 A L+ + SI+ +A++ GY++ YF FK GV+P+ Y Sbjct: 345 QAVHLLETTPLSIHDIAEQTGYDTQHYFSTVFKKTMGVSPNQYRR 389 >UniRef50_A6CWX4 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CWX4_9VIBR Length = 316 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 93/251 (37%), Gaps = 8/251 (3%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFID 64 + + SF + ++ ++ + ++ L + R++ + + F Sbjct: 51 EFICILKGSFAIGVDGNSKTYHSGGMVFLAPNKIHSLQSKTANSRLLTV--QFSPLLFQQ 108 Query: 65 VNNELPGKFTLDKNGYIAEEEPP-----LSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + ++ + + + +E++ L L + + L RL ++ + Sbjct: 109 LTGDVSFNYGVKSFEHQSEKDRSVWDAMLDLASEYVTDLDTISFSHMSLIYRLLANIERV 168 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GT 178 + + + N + I + L DIAE S + + + G Sbjct: 169 SEVINLTQNSVRDNDDELIKTCLTYIDSHYMEPLTLTDIAERSGLSYHYVSRMFKRVCGF 228 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 +F + L R+ A L+ ++ I +A KCG++ I AF+ YY TP+ + +K Sbjct: 229 NFKDYLTFIRVSKALPLLCDTTFPITDIAHKCGFSEHKLLIAAFRKYYDQTPTAFRKKYN 288 Query: 239 GVTDGINKTID 249 G + + +D Sbjct: 289 GGYNDTSSNLD 299 >UniRef50_B4WW69 Transcriptional regulator, AraC family protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WW69_9SYNE Length = 291 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 9/188 (4%) Query: 56 KTCLSFFIDVNNELPGKFTLD---KNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERL 112 + F ++ E+ T + + SL+ L + E L Sbjct: 102 QVSSIFLQRISEEISETGTGKVELLPNFQTRDPQVESLLGLLHAEVHRNGQMGQLYSESL 161 Query: 113 CISLLAMFKKRESVNSFILTNINTFTCK-----ITGIISFNIERQWHLKDIAELIYTSES 167 +L F + + + + +T I+ +E+ L D+A+L+ S+S Sbjct: 162 ANALAVSFLRNHASTQPQVAQYESGLGDRKLLLVTRYIADALEQDIKLADLAQLVGVSQS 221 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 ++ + G + + L R+ AK+L+ S+ +A CG++S S+F F+ Sbjct: 222 HFSRQFKKSMGLTPYQYLLQQRIERAKQLLKQTQQSLVDIALVCGFDSHSHFSRQFRKAT 281 Query: 227 GVTPSHYF 234 G+TPS Y Sbjct: 282 GMTPSAYR 289 >UniRef50_C0EDG6 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDG6_9CLOT Length = 517 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 4/207 (1%) Query: 42 PVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIA 101 P++L + ++ S + D ++L + + S + Sbjct: 313 LSIPAQLMKLLKNQIQNPSGWADALSQLSAHLNSQPVLSSDHIQYAAFKILSSLDQ-DND 371 Query: 102 DSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQ-WHLKDIAE 160 D + R L AM + + +N ++ ++ +S N L A+ Sbjct: 372 DLFKQAIGLRTADDLFAML-RELGQSPEDASNSDSLINRVAAYLSQNYPDPSLSLNKAAQ 430 Query: 161 LIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFI 219 +Y S S + + + + SFT+ L RM AKKL +A K GY SYF Sbjct: 431 SVYVSPSYLSRIFKQKLNLSFTDYLVKLRMEEAKKLCKQKELKTAQIAAKVGYRDASYFT 490 Query: 220 CAFKDYYGVTPSHYFEKIIGVTDGINK 246 FK Y+G+TP Y + T G+++ Sbjct: 491 LCFKKYFGMTPGCYRKTYALKTIGMDE 517 >UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY53_9BACL Length = 545 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 132 TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMR 190 T+ + I + + L D+A + S + K + +F E + R+ Sbjct: 429 TDSSQLIWHIVDYLDAHYFEDISLIDVATRFHLDPSYLSKLFKSVTSENFIEYVTRKRIE 488 Query: 191 YAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDG 243 A +L+ S+ I+ +++ GY + YF FK G TPS Y E G Sbjct: 489 KACELLRSSERKISEISELIGYENQRYFSQVFKKSTGQTPSEYREAQQSGKAG 541 >UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGS5_CLOCL Length = 293 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 13/249 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVIS---FKKNSLFIVSDKIRRELPVCPSKL---------R 49 D V + I ++ + ++ KK ++ L V K Sbjct: 39 DRVEIMYVIDGQCEIDVATDNVNNLKLKKGDFILLDAGTVHRLIVLGEKSCRMLNIEFSF 98 Query: 50 IVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 I D D T + I+ + F + + ++ + +S Sbjct: 99 IEDSDILTSIRLLIEKVKSIALLFEMRCPFLLLKDNNDIYHSLKNIVIQLGMESEENQFS 158 Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 +L L + + ++++ + N + K IS N ++ +KDI+ + +E + Sbjct: 159 IQLLFYELLLKISKVAMSNENTSTSNIYINKAKHFISMNYDKDITIKDISSYVNINEDYL 218 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + + G + TE + R+ AK L+++ I + G NS YF FK G+ Sbjct: 219 NRIFKKHTGHTITEYVTLFRIEKAKMLLSNTDIPIIDICSYVGINSRQYFSQVFKKCTGI 278 Query: 229 TPSHYFEKI 237 +P Y + I Sbjct: 279 SPYKYRKSI 287 >UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXP8_PAESJ Length = 768 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 13/232 (5%) Query: 12 QSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPG 71 F++ + + +++ + + +EL C + + + L Sbjct: 545 HYFNIRYPNHLENDLLDAIKLADKENAKELLHC---FLVPVFSAEMSPQEYQLPLVRLLN 601 Query: 72 KFTLDKNGY---IAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNS 128 + + + + +F + WL ++ ++ +F R+ Sbjct: 602 SLLVVQQESGISLNQIRQGKGSLFEELLKLNTVKEIEDWLWCKVVYPMIQIFMDRQDA-- 659 Query: 129 FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDT 187 + + K+ +I + + L+D A + + + + R E TSF+E L Sbjct: 660 ----QYHNISEKMIDLIHHHYDTDLSLEDCAAKLNYNANYLSSVFRKETNTSFSEYLAAY 715 Query: 188 RMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 R AKK + + +A + YN+ FI +F+ G+TP Y EK + Sbjct: 716 RFSMAKKWLRETDTPVKDIASRLCYNNPQNFIRSFRKLEGITPGQYREKHVA 767 >UniRef50_O31522 HTH-type transcriptional regulator yesS n=2 Tax=Bacillus subtilis RepID=YESS_BACSU Length = 761 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 76/205 (37%), Gaps = 16/205 (7%) Query: 35 DKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPG---KFTLDKNGYIAEEEPPLSLV 91 + + + C +L + S I + + + L+ + P Sbjct: 563 QEAKELIDGCMKELSEKAAIDRHVHSALIQLFSRIQEDILHSGLNPSELFQHRNP----- 617 Query: 92 FSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER 151 F ++ + + WL + + L+ + R++ ++ +I Sbjct: 618 FLDISELREPNEAAAWLMDVVVTPYLSKLEGRKN------RQQKQLAERVIAMIHEQYMA 671 Query: 152 QWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 L+ A+ + + + K + G +F + + R+ AK+L+ + + I+ V+++ Sbjct: 672 DISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIEKAKELLVNTNKKIHDVSEEV 731 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFE 235 GY +YF FK G+ P + + Sbjct: 732 GYRH-NYFNRIFKKQVGMPPGVFRQ 755 >UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LII8_9FIRM Length = 502 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 1/136 (0%) Query: 102 DSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAEL 161 + + ++ F + + + I+ + Q L+ +A Sbjct: 365 EQMEECISLEEARRIMEAFAGQCHLTELQNAPKSKNIQLAVEYINAHYAEQLSLEQVAAS 424 Query: 162 IYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 +Y + + + + G +F L D R+ + L+ + + + ++AQ+ GY + SYF Sbjct: 425 VYLNPDYFSRAFKMETGQTFVNYLTDVRLSRSVWLLENTALRVQMIAQQVGYYNASYFST 484 Query: 221 AFKDYYGVTPSHYFEK 236 FK YG++P Y K Sbjct: 485 IFKKKYGMSPYEYRRK 500 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 94/226 (41%), Gaps = 7/226 (3%) Query: 19 NRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKN 78 N K + + PS+ + + F D P + + Sbjct: 41 NGEQFELKAGDFTLYNSADLSSAEAIPSEKGFKALALVFNPNLFCDFKKAHPMLRSKTEE 100 Query: 79 G----YIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNI 134 + A+ ++ + + ++ + + + ++LL++ + E I+ + Sbjct: 101 RRFYPFSAQASSEVAQLKDTLVNLASRNAPD-YTQGHIAMALLSLMVEVEPNILSIIDDA 159 Query: 135 NTFT--CKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYA 192 ++ + K I NIE+ L+ +A + S + +K+RL E SF++IL+ R+ +A Sbjct: 160 SSLSDSQKAIKYIENNIEKDITLEGLAAHMSMSIATLKRRLAAEDLSFSQILKVKRINFA 219 Query: 193 KKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + + SI +A + G+ S ++F AFK Y +TP + +++ Sbjct: 220 ATQLRMSEKSITEIAFESGFKSAAHFSTAFKSVYNMTPKDFRNQVV 265 >UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8RTE5_9CLOT Length = 310 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 92/237 (38%), Gaps = 5/237 (2%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 V + + + D IN R + K N IV+ + CP + + + SF Sbjct: 38 VELFLVLEGTLDFFINSRQYTLKPNDFVIVNPNEIHSIE-CPDPNITIVL-QIPMKSFEG 95 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 +++E F A ++ ++ +E + + + + L+ + Sbjct: 96 YMSDESRITFADKDESQKARLVALVTAMYRTYEKGEFGYRLKVKSQFMEFLYLIVTEFRI 155 Query: 124 ESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSF 180 E ++ + ++T + N +++ L+ +A + S + R+ T + Sbjct: 156 EQIDKVRVQQKRHLDKLSQVTQYMKENYDKELSLEMVASRFGFTPSYLSHMFREYAQTGY 215 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 L D R++YA + + ++ + +A G+ F AFK YG PS Y +++ Sbjct: 216 RTYLMDLRVKYAMRELLNSDRYVGDIALDHGFADARAFAKAFKKRYGCLPSQYRKQM 272 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 14/247 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVD-------ID 54 D V +V S + ++ S + V + +++ + + Sbjct: 47 DEVEIIVIKKGSGIVSVDLTTYSVSAGDIIFVLPGQLHAISQKDNEIMEYENILFKSSLL 106 Query: 55 KKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKI-----ADSHSLWLK 109 K + D + +L+ I + P V + I ++ L +K Sbjct: 107 KSSGYDLCNDKFIQPLFSGSLNICPVINNQTPYYPPVITAINEIDHLCDLRPYAYQLSIK 166 Query: 110 ERLCISLLAMFK-KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 L L + ++ I I I+ N + ++DIA + S+S Sbjct: 167 AHLFQILYTLVSNCGQNKIKPINQKSLKKIKTILSYIANNFQENIAIEDIANYCFYSKSY 226 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 K ++ G SF + L D R+ A +L+T+ + +I +A G+N+ SYF FK YG Sbjct: 227 FMKFFKETMGVSFIQYLNDYRLEIAAELLTTTTDNILDIAFATGFNNISYFNRCFKKKYG 286 Query: 228 VTPSHYF 234 V+P Y Sbjct: 287 VSPRKYR 293 >UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQG3_DESHD Length = 273 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 7/230 (3%) Query: 7 VVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVN 66 V+ S + + + + +R V + + D Sbjct: 46 VIPFSGSACFTFDGKPYVIEPGMVVHAGPGMRLSKEVIGDREWEYAVIHYHIPQHERDEY 105 Query: 67 NELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESV 126 F+L LV + + I + + + + L +SLL + + Sbjct: 106 PLFHKDFSLAHGRSAKVPH----LVRQILDIQSIPGAAAKFQTKVLFLSLLQ--EIFTAA 159 Query: 127 NSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTEILR 185 + + G I N + ++ +A+ + G S L Sbjct: 160 CGQPGQENSKLIEEAMGYIRLNYADELTVQKVADEFSVERRQFSYLFKRHTGMSPIHYLI 219 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R+ AK+L+ S S+ VA+ GY + YF AFK Y GV+PS Y E Sbjct: 220 ECRISKAKELLGSPGCSVKQVAEWVGYTDSLYFSKAFKKYTGVSPSEYRE 269 >UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ3_ALKMQ Length = 282 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 91/244 (37%), Gaps = 10/244 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDI-----DKK 56 D + I R+ K +L +++ + ++ + + D Sbjct: 35 DQYEIYYLLSGERHYFIKDRIFHVKSGTLVLINRQDVHRTTDADTQDHVRVLLNFSKDYL 94 Query: 57 TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 + I + + L AE++ L+ + I+ + + L + L Sbjct: 95 LSSPYVIALLDGLFMNNNYVIPFLSAEQQYVEVLLDKMIHEIEHQSTGFQVALQALLMDL 154 Query: 117 LAMFKKRESVNS----FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 L + N + ++ +I I+ N + L +A+ + S+ + + Sbjct: 155 LVYTSRYIESNRHDVLAPPSQVHEKISQIVQYINTNYQTPLTLSSVAQNFFVSQYYLSRT 214 Query: 173 LRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G +F E + + R+R A++L+ ++ + +++ G+ S S+F FK+ +P Sbjct: 215 FKQATGFTFVEYINNIRIREAQRLLRETNHKVIDISEAVGFGSISHFGRVFKEVTRFSPL 274 Query: 232 HYFE 235 +Y Sbjct: 275 NYRR 278 >UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7M7_9BACL Length = 531 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 1/113 (0%) Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTE 182 ES S I N+ K I N + ++++AE S S + G +F E Sbjct: 416 ESRESQIKDNVQNVIAKTQEYILSNYHKDLSMEEVAERADLSISHFCLLFKQVTGYTFLE 475 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 L + R+ AK ++ ++ + VA GY YF FK G+TP+ Y E Sbjct: 476 YLTECRIEKAKYILKNSQVKVYQVAPMVGYQDPRYFTQVFKKVTGMTPTEYRE 528 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 4/137 (2%) Query: 105 SLWLKERLCISLLAMFKKRESVNSFI----LTNINTFTCKITGIISFNIERQWHLKDIAE 160 S + RL + + K + S + ++ TFT K+ II ++ R W L D+A Sbjct: 136 SNVPQHRLVYKITYLLSKVNDIESLVYSLSVSTDTTFTEKLKVIIEADLSRSWRLVDLAN 195 Query: 161 LIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 +++ SE I+K+L E +F ++ D RM +A KLIT++ IN +A + GY STSYFI Sbjct: 196 ILHMSEVSIRKKLEKESNNFNALVLDIRMYHAAKLITTSDKHINSIANEVGYTSTSYFIR 255 Query: 221 AFKDYYGVTPSHYFEKI 237 FK+++G+TP + K+ Sbjct: 256 NFKEFFGITPKQFSLKV 272 >UniRef50_UPI0001C365B5 response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C365B5 Length = 347 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 93 SLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQ 152 +L+ ++ DS + W L+ + + + N + + + +++ Sbjct: 206 NLYHFTQVPDSEAEW-----SAFLMGYYNRLHLSVAREHQNYSLIITHALQYLESHYQQE 260 Query: 153 WHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCG 211 L ++A+++ + S + ++ E G +F +I+ + R+ +AKKL+ + S+ IN VA G Sbjct: 261 LSLSEVAKVVSVNPSYLSSLIKKETGKNFIDIIIEARLEHAKKLLQNPSHRINEVADLSG 320 Query: 212 YNSTSYFICAFKDYYGVTPSHYFEKII 238 + +YF FK + G++P Y + + Sbjct: 321 FKDYAYFYQTFKKHVGLSPKEYRNQFL 347 >UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2Y7_9BACL Length = 118 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 136 TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKK 194 + + + L+ IAE + + KR +++ G SF + L RM+ A Sbjct: 13 EIMEAVRLYLEQHYAEPIQLQMIAERFFIHPNYFSKRFKEKYGESFVDYLNSIRMKEAAA 72 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 L+ + I ++++ G+ +YF F+ +YG TP Y E+ + Sbjct: 73 LLGETNLKIREISERVGFEDAAYFSSVFRKWYGETPKQYRERQL 116 >UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVE2_9BACL Length = 215 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEG-TSFTEILRDTRMRYAKKLITSN 199 + I + L ++ + + S + F+E L R+ AK+L+ S+ Sbjct: 113 LLDYIEEHYGEPLTLSSLSRHFHFNPSYLSSYFSAHNDEGFSEYLNRVRIAKAKELLRSD 172 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 I+ + + GY+ SYF FK G++P Y + + Sbjct: 173 GLPISEIGSRVGYSDPSYFTKVFKKQMGLSPREYRRQQLA 212 >UniRef50_C6IXH5 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXH5_9BACL Length = 524 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEIL 184 + N N ++ + + L+ +A+ + + + + + + E G +F + L Sbjct: 397 LAGLRRKNENNTIFQVIQYVDEEFRSKLKLQTLAKQFHMNPTYLGQVFKKETGKTFNDYL 456 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGI 244 + R+ AK+L+ S I+ +A + GY +T YFI FK G+ PS Y + DG Sbjct: 457 NEKRLEEAKRLLKRTSMKISDIALQVGYPNTDYFISKFKQSIGMLPSVYKSEFQ--HDGP 514 Query: 245 NK 246 K Sbjct: 515 QK 516 >UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G6T3_ABIDE Length = 534 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 7/143 (4%) Query: 95 FEGIKIADSHSLWLK-ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQW 153 + I ADS + ++ C +LLA+ + +I ++ Sbjct: 395 IKVISNADSLNEIIQYLSKCFTLLAVQNDKN-----FDERYQNMAKRILDYLNEYYSEDL 449 Query: 154 HLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 L +A+ + S++ I + L+ SF ++L RM A+K+I + + + +A+K GY Sbjct: 450 TLDSVADKFHMSKTYISRILKKYTNQSFLQLLISRRMDIARKMIAEDKFKLYEIAEKVGY 509 Query: 213 NSTSYFICAFKDYYGVTPSHYFE 235 N SYFI FK YGVTP+ Y Sbjct: 510 NDFSYFIQVFKKKYGVTPNEYRR 532 >UniRef50_C1DC70 Transcriptional regulator, AraC family protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DC70_LARHH Length = 321 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 7/241 (2%) Query: 3 YVCSVVFICQSFDLIINR-RVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 ++ ++ + I+ I + ++ I + + R + + Sbjct: 58 FIELILPQDNPISVTIDTADPIHVWPGEILLIPPFIAHHIEAENTDDRRTTLKINLQKLY 117 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + N + L E I + + ++ + Sbjct: 118 LMLANTPYAPQIEHFYQIGSNGRVYLNETATQLAEIIDRIGNEYTLRNFSDIVHVIDILC 177 Query: 122 KRESVNSFILTNINT-----FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 + + +++ N T + ++ N +L ++A+ S+S + + Sbjct: 178 QERPSDEWMVPNKKTTREMNLCATLNDMVDNNPGIDINLDELAQQFNMSKSTFCRFFKKH 237 Query: 177 -GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G SF L + +++ A + SI ++ + G++S S+F FK G TP + + Sbjct: 238 FGVSFHTWLLEKKVKSACCYLQEPDMSIQAISYQLGFSSPSHFTKVFKQLTGTTPKEFRD 297 Query: 236 K 236 Sbjct: 298 N 298 >UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_BACSE Length = 1473 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 3/160 (1%) Query: 80 YIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLC-ISLLAMFKKRESVNSFILTNINTFT 138 YI + L +F I L S+ + + + + N F Sbjct: 1308 YITKPFSAAYLKARIFNLIDQRKKLQALFCASLLPTSIEQQPGEGKEASPALSPNDRKFM 1367 Query: 139 CKITGIISFNIER-QWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLI 196 K+ I +++ ++DIA + S S+ K+L+ G S E L++ RM+ A +LI Sbjct: 1368 DKVMKTIEKHLDNGNLMVEDIANEVNMSRSVFFKKLKTLTGLSPVEFLKEIRMKRAAQLI 1427 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 ++ YS+ +A G N + YF FK YG+TP+ Y E Sbjct: 1428 ETDEYSMAQIAYMVGLNDSHYFSKCFKQQYGITPTEYKES 1467 >UniRef50_C6CWB0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWB0_PAESJ Length = 530 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 103 SHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELI 162 +H R C LL +R+ L + +I +I+ ++DIA+ + Sbjct: 400 AHYHAYALRFCRELLKAAAERD------LDRHQSVAEQIMKLIAERYHLPLTVEDIAKEV 453 Query: 163 YTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICA 221 Y S + ++ ++ G + + L RM +A +L+ + + +A + Y + SYF Sbjct: 454 YLSPNYVRTIFKEKTGETILDYLTRIRMNHAAELLKDRALKVRDIAHRVSYENVSYFCSV 513 Query: 222 FKDYYGVTPSHYFE 235 F+ + G TP+ Y + Sbjct: 514 FQKHKGSTPNEYRK 527 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQW-HLKDIAELIYTSESLIKKRLRDE 176 A+ + NI I + +N + L IAE + SE +K+ L+ + Sbjct: 229 ALLYCENDKGRLVKENIRDLQKSIRSELLYNSSNGYPTLPMIAERLNMSERTLKRHLQAQ 288 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 GT+F +I+ D R AKK++ YSI +A GY + FI AFK +G TPS Y ++ Sbjct: 289 GTTFLQIVADVRFTEAKKMLQHKQYSIQDIASIVGYEEATNFIRAFKKTFGETPSQYRKR 348 >UniRef50_Q9KDT8 BH1123 protein n=1 Tax=Bacillus halodurans RepID=Q9KDT8_BACHD Length = 526 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 5/146 (3%) Query: 92 FSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER 151 F L + + + W+ R + + + I ++ I ++ Sbjct: 384 FDLAQHLTKQGNWQEWI--RFLCEQIEHICYHQQWDENIKHK--QLIEQVMIYIEKHLAE 439 Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 L+DIA+ +Y S + + + + G SF + RM AKK+I ++ I V++K Sbjct: 440 NITLQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKAKKMIQEGNFLIYEVSEKV 499 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFEK 236 GY + +YF FK Y G TP +K Sbjct: 500 GYVNPAYFTTMFKKYTGYTPRDLIQK 525 >UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT67_9GAMM Length = 358 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 1/128 (0%) Query: 115 SLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWH-LKDIAELIYTSESLIKKRL 173 SL AM + I ++ +I +I + +R L+++AE +Y + + +RL Sbjct: 231 SLHAMLATYPAELFRISPEEHSLAIRIRNLIGNDFQRPLPGLQEVAERLYMTTPTLHRRL 290 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 R+E TSF +I R A ++S Y+ + +++ G++ +S F AFK + G+TP Y Sbjct: 291 REEQTSFQQIKDHCRRDAAIGYLSSAQYTTSELSELMGFSDSSTFHRAFKKWTGLTPQDY 350 Query: 234 FEKIIGVT 241 +K I Sbjct: 351 RKKHISAH 358 >UniRef50_C6CVW8 Two component transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=C6CVW8_PAESJ Length = 543 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 61/144 (42%), Gaps = 8/144 (5%) Query: 101 ADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFT-------CKITGIISFNIERQW 153 ++ +LW + +L ++ ++ E I + + + C+ I+ + Sbjct: 394 SNPIALWEQLEQYDTLQSLREQAERCLKEIAADFRSLSATPSQIICEAEKILQRDYAESL 453 Query: 154 HLKDIAELIYTSESLIKKRLRDEG-TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGY 212 L+ +A ++ + + K + E +F E L D R+ AK+++ Y + ++ + GY Sbjct: 454 TLQSVASAVHVTPVWLSKLFKKEKRQTFLEYLTDIRIEKAKEMLGDIQYKVYQISYQVGY 513 Query: 213 NSTSYFICAFKDYYGVTPSHYFEK 236 +F FK G TP Y + Sbjct: 514 KDPVHFSKLFKKQVGCTPKEYRRQ 537 >UniRef50_C6D143 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D143_PAESJ Length = 536 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 112 LCISLLAMFKKR--ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 LLA + +R ++ L + +++ I + W +K +AE + S + Sbjct: 402 QLAELLAGYVQRYMDTEQKAQLNQQHNLIRRVSLFIEERLHEHWTVKQLAEHFNLNASYL 461 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + E G + +E ++DTR+ A+KL+ + + VA++ G +T+YF FK GV Sbjct: 462 SVLFKREMGRTISEFVQDTRIERARKLLQDPNIKVYEVAEQVGIQTTAYFTYLFKKLVGV 521 Query: 229 TPSHYF 234 TP Y Sbjct: 522 TPQEYR 527 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 14/227 (6%) Query: 33 VSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVF 92 + + + ++ + ++ + + EL F + A E +VF Sbjct: 268 LPNNQKEQMNRSAEDFTFLAFNQALMIGDMQTIQRELDAIFNQLSQQH-ATPEYVRYVVF 326 Query: 93 SLFEGIK-------IADSHSLWLKERLCISLLAMFKKRESVNSFI-----LTNINTFTCK 140 LF I + + + R +L ++ + V + + + + + Sbjct: 327 LLFSDISRQYPTVLEENYEKIVEEIRASNNLNTLYALMQQVLAEVKNKPKIKKYSESVSQ 386 Query: 141 ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGT-SFTEILRDTRMRYAKKLITSN 199 I + +LK +A+ ++ + S + + + E SF++ L R ++A+KL+ Sbjct: 387 AVERIEQGYLEELNLKTVADELHLNPSYLGQIFKKETKRSFSQYLNQVRTKHAQKLLLYT 446 Query: 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINK 246 +IN +++K G+N+T+YF FK G+TP + E+ G+ + Sbjct: 447 DDTINEISEKVGFNNTNYFSKMFKKLNGITPKEFREQYQSNYAGVEE 493 >UniRef50_UPI000178A7F3 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A7F3 Length = 349 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 19/201 (9%) Query: 39 RELPVCPSKLRIVDIDKKTCL-SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEG 97 +E+ ++ R I + L + + +L G+ P FE Sbjct: 163 QEIEDYCNERRFESIQLQELLDELYAKLIKQLNGRDVYSFERMTGISGPAPGGNHHYFER 222 Query: 98 IKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKD 157 + LA+ + + + N + I N+ R L + Sbjct: 223 FR-----------------LAVNQTVKLIREKRKGNAKEPVEEAKAYIERNLSRDLSLDE 265 Query: 158 IAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTS 216 +A+++ + S + + +F RM AKKL+ Y I ++ + GY Sbjct: 266 VADMLGLNPSYFSQLFKQMTDETFVHYRIKKRMEKAKKLLAIPHYKITDISFEVGYADHP 325 Query: 217 YFICAFKDYYGVTPSHYFEKI 237 +F FK G TPS Y E + Sbjct: 326 HFTKTFKKVTGYTPSEYREML 346 >UniRef50_C6CXK7 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CXK7_PAESJ Length = 481 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 7/158 (4%) Query: 82 AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTC-- 139 AEE + + F + IK H E LC L + NS L + +C Sbjct: 327 AEELKDMEMEFLNYSEIKERFEHF----ESLCSFLHDVLASITQGNSRSLQEGDILSCFN 382 Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 ++ I + E++ +LKD++ Y ++ + + G +F+E + + R++ A++L+ Sbjct: 383 RMVAYIDSHYEQKLYLKDLSAQFYINQVYCCQLFKKNLGKTFSEYVSELRIKKARELLKK 442 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 SI +A + GY YF FK + G+TPS + + Sbjct: 443 TDLSIEEIAIQTGYVEYYYFNKVFKKHCGITPSKFRKS 480 >UniRef50_B8I0Y2 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I0Y2_CLOCE Length = 531 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 10/180 (5%) Query: 66 NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE----RLCISLLAMFK 121 +N+ P + IA L + LF ++ADS K+ R +LL + + Sbjct: 353 SNKEPIENIKVSCMLIASYCYRLVASYKLFAP-ELADSEPEVYKQIQSSRNIQNLLNILR 411 Query: 122 K-RESVNSFILTNINTFTCKITG---IISFNIERQWHLKDIAELIYTSESLIKKRLRDE- 176 + E+V+ + N N F+C + I N + L+ IA+ I+ + S + + + E Sbjct: 412 QLVENVSQVVENNGNKFSCLVKETQKYIRDNYNKNISLQSIADHIHVNSSYLSRLYKKET 471 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 G S + + R+ AKKL+ Y + VA G +YF F Y G++P Y K Sbjct: 472 GESIVDAINKYRIENAKKLLKDPVYKVFEVACAVGIEDPAYFTHVFTKYTGMSPKEYKSK 531 >UniRef50_UPI0001C36195 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36195 Length = 145 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEIL 184 ++ I I N + ++ D+A + S + ++ G + T + Sbjct: 14 LDGVRNKESADVIISIREYIEKNYDDSLNVADLARKYGLNVSYLSTLFKERTGINITSYI 73 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY--FEKIIGVTD 242 RM A L+ ++ + VA GY+++ YF FK Y GVTP Y EK T Sbjct: 74 EGIRMEKAMNLLRETNWKVTEVAFHVGYSNSGYFSRVFKKYTGVTPGEYGEMEKKRRKTP 133 Query: 243 GIN 245 GI+ Sbjct: 134 GIS 136 >UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969E72 Length = 291 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 11/239 (4%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRR----ELPVCPSKLRIVDIDKKTCLSFFI 63 I S +I F + ++ +I E + RI +I F Sbjct: 34 YVIVGSGMRLIGDMTEPFLGGEVVMIPPEIPHCWYFEDDDTDEQGRIANITVTFDNDFLD 93 Query: 64 DVNNELPG------KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 + P K + ++E +++ L E +++ + +L + + Sbjct: 94 RCSGTFPELCGHIDKLKKKYDAVKFDKEKSEAIIDLLEEMCNQSEAERVASMIKLILIMA 153 Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-E 176 + + +I + N +R L D+A + + + + Sbjct: 154 DSGSEHVVGKYQRIDKETKRMNQIQTYVICNAKRDITLDDVARYVGMNRASFCIFFKKAT 213 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G +F L + R+ A +L+ +++ + G+N+ YF FK + GV+P Y + Sbjct: 214 GKTFVTYLNEYRIGLACQLLKQKRMTVSEICYNVGFNNVPYFNRTFKRHKGVSPCEYKQ 272 >UniRef50_UPI0001789620 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789620 Length = 540 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 63/147 (42%), Gaps = 8/147 (5%) Query: 90 LVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNI 149 + + + WL + L ++ ++++ + + + +S + Sbjct: 400 ALHKEIMDMDSLNELKSWLHDYLESTM-------QAMDRGFGGSRRSEVAEACKYVSLRL 452 Query: 150 ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQ 208 +++ L D+A ++ + S + + E G +F E + +M AK+L+ ++ + + Sbjct: 453 DQRITLDDVAGCLHLNPSYFSRMFKKETGVTFIEYVTRMKMERAKELLRQTDRTVGEICE 512 Query: 209 KCGYNSTSYFICAFKDYYGVTPSHYFE 235 Y++ SYF FK Y GVTP + Sbjct: 513 SLAYDNVSYFSKTFKAYAGVTPVEFRN 539 >UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL87_9FIRM Length = 287 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 90/238 (37%), Gaps = 13/238 (5%) Query: 14 FDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV------DIDKKTCLSFFIDVNN 67 + + + + + I+ + EL P +RI+ ID + ++ Sbjct: 49 YSVHCGEKEYVLDEGDIIIICPGVIHELFSPPKGVRIIFLVSLAQIDLQELDLVISMISP 108 Query: 68 ELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVN 127 + + L + F + +S S++ K + L+ + + Sbjct: 109 AILISPEKFPQIHAQIHRLMLEIRDEYFRNLPYTES-SIYAKFLEILVLVGRCYAEIAQH 167 Query: 128 SFILTN--INTFTCK---ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFT 181 +F N + K I I+ + L+++A L S+ + + T+F Sbjct: 168 NFEAKNNKQQEYMEKFLFICNYINEHYAEPLSLEEVASLAGFSKYHFTRLFKQYADTTFY 227 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 + L R+ +AK L+ + S+ ++ +CG+++ S F+ F+ G TP+ + G Sbjct: 228 KYLNQKRIAHAKHLLVDKNLSVLDISLQCGFSNLSSFLRMFRKLTGFTPTELRKMYDG 285 >UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B093_RUMGN Length = 413 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 135 NTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTSFTEILRDTRMRYAK 193 ++ K+ + ++ L +A+ + + S + ++ GTS T+ + R+ +AK Sbjct: 299 SSIIRKVVAYLETDLSADLTLNTLAQHLGVNASYLSTLFTKEMGTSLTDYVNHYRIDHAK 358 Query: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTI 248 L+ + I +A +CG YF FK G+TP + E G+ K + Sbjct: 359 TLLANTDVPIKDIALRCGIGDVHYFTRLFKRISGMTPKAWRESASGLHREGKKKL 413 >UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDZ7_EUBSP Length = 515 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE- 176 +F+ ++ + N I N+ L+ IAE ++ S S + + + Sbjct: 384 ELFQYTKNQFNGSNGTQNRIIENTIKFIHQNLATALSLEVIAEHLHISASHLSRTFKKYC 443 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 S TE + TR+ AK+ + ++ +A + GYN +YF FK Y G +PS Y +K Sbjct: 444 DESLTEYVNKTRIEKAKEYLKDSNMLTYEIANQVGYNDATYFSSIFKKYTGFSPSEYRQK 503 Query: 237 I 237 Sbjct: 504 Y 504 >UniRef50_Q65KY8 Probable transcriptional regulator n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KY8_BACLD Length = 760 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 8/146 (5%) Query: 91 VFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIE 150 + ++ + W+ ER L + R++ ++ +I + Sbjct: 616 LLQELSELREPERAVGWMMERCISPYLKEMEGRKN------RQQKRLVEQVLEMIHQDYM 669 Query: 151 RQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQK 209 L+ A+ T+ + K + G +F + + R+ AK+L+ + I+ V+++ Sbjct: 670 NDISLESCADRAGTNSYTLSKAFKQVTGINFIDYVTRLRIEKAKELLLETNKKIHDVSEE 729 Query: 210 CGYNSTSYFICAFKDYYGVTPSHYFE 235 GY SYF FK G+ PS Y + Sbjct: 730 VGYRH-SYFNRIFKKQVGIPPSRYRQ 754 >UniRef50_C6D1V9 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1V9_PAESJ Length = 279 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 93/237 (39%), Gaps = 14/237 (5%) Query: 16 LIINRRVISFKKNSLFIVSDKIRRELPVCPSK----LRIVDIDKKTCLSFFIDVNNELPG 71 LII+ + S + N+L + + + ++ +R V + + L +++ L Sbjct: 42 LIIDGKSYSIEPNTLLVFPPFQMHRIQIQVTEAEPFIRSVLLFEPAVLHGYLNDFPSLKS 101 Query: 72 KF----TLDKNGYIAEEEPPLSLVFSLFEGIKIA--DSHSLWLKERLCISLLAM---FKK 122 F N + P +L I +E + + LL++ K+ Sbjct: 102 FFQRLMLQQANVHPVNAMPENEPFVALLRQFSITMGGKREADFEENMGVFLLSLVHQLKQ 161 Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFT 181 S L N +I G I + + L+D+A ++ S + ++ GT+ Sbjct: 162 SPDGESAYLKKHNLHVEEIIGWIEKHYMDPFRLEDLAGELHLSPYHVAHLFKESTGTTIV 221 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + TR+R+A L+ + ++ + + G + SYF F+ GV P Y + +I Sbjct: 222 AYTQATRIRHACSLLRKTTLPLSEIGYRVGIANPSYFSKIFRQIMGVAPLTYRQHLI 278 >UniRef50_UPI0001787F16 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787F16 Length = 280 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 8/243 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDIDKKTC 58 Y + ++ V + KK L IV+ + ++ + Sbjct: 36 PYFELYYLLNGERVYFMDDNVFTVKKGDLMIVNPHDLHSTASSEKLLFERVLIGFSRTFI 95 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 V N L + + + L+ S+ + +H L L LL Sbjct: 96 EQGDAGVANLLDHGTSRLIRIPLKHQPEIERLLHSMLAECQTEQTHYSSLVRSLMNELLI 155 Query: 119 MFKKRE----SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL- 173 + E S ++ +I I N + L+ +A+ Y S S + + Sbjct: 156 RLHRIETTLQSQTHEYEHPMHQKISEIAQYIKSNFHEKLTLEQVAKQFYISPSYLSRVFT 215 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 R G F E ++ R+R A+K++ S+ S+ ++++ G+ ++F FK G TP Y Sbjct: 216 RLTGFHFREYVQVVRIREAQKMLVSSRDSVQIISELAGFEHIAHFNKTFKKIAGTTPLQY 275 Query: 234 FEK 236 ++ Sbjct: 276 RKR 278 >UniRef50_UPI0001C35655 two-component response regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35655 Length = 269 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 95/239 (39%), Gaps = 9/239 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSL--FIVSDKIRRELPVCPSKLRIVDIDKKTCL 59 +C + + R + + + I++D E+ RI + + + Sbjct: 32 AILCHNALVSEILTAENGREALELLEERVPDIIITDIRMPEIDGTELVRRIREQGYEMPV 91 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + + F + ++ + + + FS+ E +K + LK+R + + Sbjct: 92 IILTALTD-----FAIARDLIHYQIQNYIVKPFSIEEILKETEVAIGELKKRSQMKMAQK 146 Query: 120 FKKR-ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-G 177 K + ++ N + I ++ L DI+ ++ S++ + + E Sbjct: 147 IVKEFPELVEIPPSSENLLISQAVEYIGSHLAGAASLNDISGALHVSKAYLSTLFKREMN 206 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 T+ T+ + RM+ AKKL+ ++ + K GY S YFI FK+ G+TP Y +K Sbjct: 207 TTVTDFVTKQRMKEAKKLLLETDMLVSEIYLKVGYQSDKYFIKVFKELEGITPLAYRKK 265 >UniRef50_C6CTL6 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTL6_PAESJ Length = 533 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 8/160 (5%) Query: 82 AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKI 141 + +P + + + ++ ER L +R S + ++ Sbjct: 381 NKADPDNHGLLEQLSSFPTFEMMTRFV-ERTVCDLRVQATERHSSKDVLQ------LVQV 433 Query: 142 TGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNS 200 I + L +A L+Y + + G +F + L + RM++A +L+ + Sbjct: 434 RAYIDEHYGENITLDSMASLVYMNPYYFSSFFKKHMGENFKQYLTEVRMKHALRLLLQSE 493 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 + +A++ GY + F FK YG P Y + G Sbjct: 494 LMVYEIAERVGYQNARQFSDMFKKKYGKLPQEYKQSFKGS 533 >UniRef50_C0FTY3 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTY3_9FIRM Length = 250 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 77/190 (40%), Gaps = 18/190 (9%) Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLV----FSLFEGIKIADSHSL---WLKERLCISL- 116 + ++PG L+ Y+ E P ++ +S F+ K A ++ LK + L Sbjct: 54 TDIQMPGVNGLEVCKYLYETRPETQVIILTAYSDFDYAKFAIKYNACEYVLKISIMDELP 113 Query: 117 ---------LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 L KK ++ T +I + N + + L +IA+ ++ + S Sbjct: 114 EALEKATGKLTQLKKEIEKEEIAVSGQRTLLQQIDQYVEQNFKNKISLDEIADELHVNRS 173 Query: 168 LIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + + + G + + + + R+ AK+ + + +++ G + YF FK Sbjct: 174 YLSRFYKNKTGINLFDTILNLRIEAAKEYLLNTDMKTYEISEAIGVDDAGYFSKMFKKIT 233 Query: 227 GVTPSHYFEK 236 GV+P + ++ Sbjct: 234 GVSPKEFRKQ 243 >UniRef50_A8RMQ2 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RMQ2_9CLOT Length = 502 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 140 KITGIISFNIER-QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLIT 197 K + N ++D A S + + E G +FT+ L RM AK L+ Sbjct: 396 KALAYMEENYSSPDLSMEDTAVAAGLSSARFSTSFKSETGVTFTDYLLKLRMEKAKDLMR 455 Query: 198 SNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 + I +A GY++ YF AFK Y G PS Y EK G+ Sbjct: 456 DPNRKIYEIAMMTGYSNIPYFSTAFKKYTGCPPSEYREKQHGL 498 >UniRef50_C8ZXM2 DNA binding response regulator n=4 Tax=Enterococcus RepID=C8ZXM2_ENTGA Length = 495 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 8/166 (4%) Query: 73 FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILT 132 F L + Y + I+ ++ ++ + +L +L + K + Sbjct: 329 FLLFNDIYRQFPALTRENYDRIITRIRASN--TIQVLRQLFNEILQLAKDQPQQ-----K 381 Query: 133 NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRY 191 + K G+I + ++ +K AE ++ S + + + E SF + + R++ Sbjct: 382 RYSEIVQKAVGMIEEHYTQELTVKSAAEALHVSVVYLGQVFKKETELSFNQYVNFIRIKK 441 Query: 192 AKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 A++L+ +IN +A GYN+T+YF FK G+TP + EK Sbjct: 442 AQQLLLHTGQTINEIADAIGYNNTNYFSKMFKKLNGLTPKEFREKY 487 >UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC74_9FIRM Length = 240 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-R 174 L + +++E N + ++ +I + + L IAE + + + + Sbjct: 116 LNKLNEEKEITQGLDRENCSDIVREMINVIEESYGMKLQLDAIAEKFHMTPEYLGNLFAK 175 Query: 175 DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + G +F+ LR RM AK+L+T I VA GY YF FK+Y GV+ + Sbjct: 176 ETGITFSNYLRQVRMEKAKELLTGTDMKIYEVACAVGYPDQKYFSKVFKEYAGVSAKQF 234 >UniRef50_C0D0A3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D0A3_9CLOT Length = 487 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 118 AMFKKRESVNSFILTNINT--FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR- 174 ++ + E +N I + + ++ + + + LKD+A L + + + + K + Sbjct: 366 SLTLQAEGINKSIRKRVQSGGLAFQVAAYLQQHYDEDLSLKDLANLFFITPTYLSKWFKD 425 Query: 175 DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 G + T+ + + RM A++L+ S S+ + ++ GY ++YF FK YG+ PS + Sbjct: 426 KTGATITQFVENLRMERARELLEYTSLSVGEIGRRVGYEDSNYFSRVFKKIYGIPPSKW 484 >UniRef50_A7JVV0 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JVV0_PASHA Length = 298 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 10/186 (5%) Query: 58 CLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF-EGIKIADSHSLWLKERLCISL 116 CL F+ D EL +L + E PL + + + + + + L + + Sbjct: 112 CLHFYYDHQAEL--MESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKSVVNSLAVVI 169 Query: 117 LAMFKKRESVNS------FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L M + VN + + + I N E +W + D+A I+ S + + Sbjct: 170 LTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMAAFIHLSRAQLV 229 Query: 171 KRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + S + R++ A L+ S + S+ +A CG+ S S+FI AFK Y VT Sbjct: 230 RLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSESHFITAFKKQYCVT 289 Query: 230 PSHYFE 235 PS Y + Sbjct: 290 PSQYRQ 295 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 220 3e-56 UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=... 182 8e-45 UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 T... 180 4e-44 UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostri... 180 6e-44 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 178 1e-43 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 178 2e-43 UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteri... 177 4e-43 UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales ... 176 7e-43 UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=C... 175 2e-42 UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=R... 174 3e-42 UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1... 173 3e-42 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 173 4e-42 UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=C... 173 6e-42 UniRef50_UPI0001787F16 transcriptional regulator, AraC family n=... 173 7e-42 UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Rum... 171 2e-41 UniRef50_C6D8V3 Transcriptional regulator, AraC family n=1 Tax=P... 170 6e-41 UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=C... 170 6e-41 UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 T... 169 8e-41 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 169 1e-40 UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia... 168 1e-40 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 168 1e-40 UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC... 168 2e-40 UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=P... 167 3e-40 UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=... 167 3e-40 UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostri... 167 3e-40 UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=C... 167 3e-40 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 167 4e-40 UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coproco... 167 4e-40 UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=P... 166 4e-40 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 166 5e-40 UniRef50_Q5WL40 AraC/XylS family transcriptional regulator n=1 T... 166 7e-40 UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Cl... 166 9e-40 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 165 9e-40 UniRef50_C0EDI6 Putative uncharacterized protein n=2 Tax=Clostri... 165 1e-39 UniRef50_A8RIS8 Putative uncharacterized protein n=1 Tax=Clostri... 165 2e-39 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 165 2e-39 UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=P... 165 2e-39 UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecali... 164 2e-39 UniRef50_UPI0001B9ED63 transcriptional regulator, AraC family n=... 164 3e-39 UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=C... 164 3e-39 UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dict... 163 4e-39 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 163 4e-39 UniRef50_C0EIE9 Putative uncharacterized protein n=1 Tax=Clostri... 163 4e-39 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 163 4e-39 UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminoc... 163 4e-39 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 163 5e-39 UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales ... 163 5e-39 UniRef50_C8NIW5 AraC family transcriptional regulator n=2 Tax=Gr... 163 5e-39 UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=R... 163 6e-39 UniRef50_C0EGI4 Putative uncharacterized protein n=1 Tax=Clostri... 163 7e-39 UniRef50_C0EDY4 Putative uncharacterized protein n=1 Tax=Clostri... 162 8e-39 UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bactero... 162 8e-39 UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Ta... 162 8e-39 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 161 1e-38 UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=C... 161 2e-38 UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus R... 161 2e-38 UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=D... 161 2e-38 UniRef50_A6CWX4 Transcriptional regulator, AraC family protein n... 161 2e-38 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 161 2e-38 UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=C... 161 2e-38 UniRef50_C0EGR3 Putative uncharacterized protein n=1 Tax=Clostri... 161 2e-38 UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostri... 161 3e-38 UniRef50_C7GFI0 Transcriptional regulator, AraC family n=2 Tax=C... 161 3e-38 UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostri... 160 4e-38 UniRef50_C0ECN2 Putative uncharacterized protein n=1 Tax=Clostri... 160 4e-38 UniRef50_Q0SZ95 HTH-type transcriptional activator rhaS n=93 Tax... 160 4e-38 UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Ta... 160 4e-38 UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=P... 160 4e-38 UniRef50_C5RJE9 Transcriptional regulator, AraC family n=1 Tax=C... 159 6e-38 UniRef50_C3RLG7 Transcriptional regulator n=2 Tax=Bacteria RepID... 159 9e-38 UniRef50_B5CQG2 Putative uncharacterized protein n=1 Tax=Ruminoc... 158 1e-37 UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=P... 158 1e-37 UniRef50_Q65MB5 Probable transcriptional regulator n=1 Tax=Bacil... 158 1e-37 UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabac... 158 1e-37 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 158 2e-37 UniRef50_C0EIL7 Putative uncharacterized protein n=1 Tax=Clostri... 158 2e-37 UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing... 158 2e-37 UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacte... 158 2e-37 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 158 2e-37 UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium R... 158 2e-37 UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=C... 158 2e-37 UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptoc... 157 2e-37 UniRef50_A9KTC0 Transcriptional regulator, AraC family n=2 Tax=C... 157 3e-37 UniRef50_C9LCE8 Transcriptional regulator, AraC family n=1 Tax=B... 157 3e-37 UniRef50_C0EAY1 Putative uncharacterized protein n=1 Tax=Clostri... 157 3e-37 UniRef50_C4Z7U7 LacI family transcriptional regulator n=1 Tax=Eu... 157 3e-37 UniRef50_C0EG54 Putative uncharacterized protein n=1 Tax=Clostri... 157 3e-37 UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=En... 157 3e-37 UniRef50_C3QPX4 Transcriptional regulator n=9 Tax=Bacteroides Re... 157 3e-37 UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostri... 157 3e-37 UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1... 157 3e-37 UniRef50_P77396 Uncharacterized HTH-type transcriptional regulat... 157 4e-37 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 156 5e-37 UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=C... 156 5e-37 UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=S... 156 6e-37 UniRef50_UPI0001789626 transcriptional regulator, AraC family n=... 156 6e-37 UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=B... 156 7e-37 UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryan... 156 7e-37 UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacte... 156 8e-37 UniRef50_A8SHV0 Putative uncharacterized protein n=1 Tax=Faecali... 156 8e-37 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 156 8e-37 UniRef50_Q0ST06 Transcriptional regulator, AraC family n=13 Tax=... 156 8e-37 UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=A... 156 9e-37 UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=C... 155 1e-36 UniRef50_Q5WCU1 AraC/XylS family transcriptional regulator n=1 T... 155 1e-36 UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 155 1e-36 UniRef50_A8S1P5 Putative uncharacterized protein n=2 Tax=Clostri... 155 1e-36 UniRef50_A6LXV6 Xylan 1,4-beta-xylosidase n=2 Tax=Clostridium Re... 154 2e-36 UniRef50_A0AET6 Complete genome n=16 Tax=Listeria RepID=A0AET6_L... 154 2e-36 UniRef50_B7CB27 Putative uncharacterized protein n=1 Tax=Eubacte... 154 2e-36 UniRef50_UPI0001BC838F helix-turn-helix- domain containing prote... 154 2e-36 UniRef50_B6FM02 Putative uncharacterized protein n=2 Tax=Clostri... 154 2e-36 UniRef50_A4CQ66 Activator protein MtlR n=10 Tax=Bacteroidetes Re... 154 2e-36 UniRef50_C7H3E2 Transcriptional regulator, AraC family n=4 Tax=C... 154 3e-36 UniRef50_C9A3T9 Transcriptional regulator n=1 Tax=Enterococcus g... 154 3e-36 UniRef50_B8DFE8 Transcriptional regulator, AraC family n=18 Tax=... 154 3e-36 UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=C... 153 4e-36 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 153 4e-36 UniRef50_C9KMJ8 Methylphosphotriester-DNA alkyltransferase n=1 T... 153 4e-36 UniRef50_C0EDW5 Putative uncharacterized protein n=1 Tax=Clostri... 153 5e-36 UniRef50_C6D1V9 Transcriptional regulator, AraC family n=1 Tax=P... 153 7e-36 UniRef50_C1DC70 Transcriptional regulator, AraC family protein n... 153 7e-36 UniRef50_A3I6W7 YbbB n=2 Tax=Bacillaceae RepID=A3I6W7_9BACI 152 8e-36 UniRef50_UPI0001C35596 transcriptional regulator, AraC family pr... 152 8e-36 UniRef50_B9IXY7 Transcriptional regulator, AraC/XylS family n=7 ... 152 9e-36 UniRef50_C0EGG3 Putative uncharacterized protein n=1 Tax=Clostri... 152 9e-36 UniRef50_A5KPF1 Putative uncharacterized protein n=1 Tax=Ruminoc... 152 1e-35 UniRef50_B1R1I5 Transcriptional regulator, AraC family n=2 Tax=C... 152 1e-35 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 152 1e-35 UniRef50_C5RJM2 Transcriptional regulator, AraC family n=1 Tax=C... 151 2e-35 UniRef50_C0X5H9 AraC family transcriptional regulator n=22 Tax=E... 151 2e-35 UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostri... 151 2e-35 UniRef50_A6LWT0 Transcriptional regulator, AraC family n=1 Tax=C... 151 2e-35 UniRef50_A6M2W7 Helix-turn-helix-domain containing protein, AraC... 151 2e-35 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 151 2e-35 UniRef50_C7RDA0 Transcriptional regulator, AraC family n=2 Tax=A... 150 3e-35 UniRef50_C0EIK7 Putative uncharacterized protein n=1 Tax=Clostri... 150 3e-35 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 150 4e-35 UniRef50_UPI0001BC4191 helix-turn-helix domain-containing protei... 150 5e-35 UniRef50_A6LR84 Transcriptional regulator, AraC family n=2 Tax=C... 150 5e-35 UniRef50_UPI0001C35CCD helix-turn-helix domain-containing protei... 150 5e-35 UniRef50_C0E8H9 Putative uncharacterized protein n=1 Tax=Clostri... 149 6e-35 UniRef50_C3RI67 Transcriptional regulator n=2 Tax=Bacteria RepID... 149 6e-35 UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnos... 149 6e-35 UniRef50_B0AA61 Putative uncharacterized protein n=1 Tax=Clostri... 149 7e-35 UniRef50_C9A6B7 Transcriptional regulator n=1 Tax=Enterococcus c... 149 8e-35 UniRef50_C3QA40 Putative uncharacterized protein n=3 Tax=Bactero... 149 8e-35 UniRef50_C0D4H9 Putative uncharacterized protein n=1 Tax=Clostri... 149 9e-35 UniRef50_C2KWQ1 AraC family transcriptional regulator n=1 Tax=Or... 149 1e-34 UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=C... 149 1e-34 UniRef50_C3RPM5 Transcriptional regulator n=3 Tax=Bacteria RepID... 148 1e-34 UniRef50_C4FY13 Putative uncharacterized protein n=1 Tax=Catonel... 148 1e-34 UniRef50_C4ZF37 L-rhamnose operon transcriptional activator n=4 ... 148 2e-34 UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 T... 148 2e-34 UniRef50_C1I2I2 Transcriptional regulator n=1 Tax=Clostridium sp... 148 2e-34 UniRef50_C6PB97 Transcriptional regulator, AraC family n=1 Tax=T... 148 2e-34 UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=... 148 2e-34 UniRef50_UPI0001C3592F AraC-like transcriptional regulator n=1 T... 148 2e-34 UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=C... 148 2e-34 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 148 2e-34 UniRef50_C6LL88 Transcriptional regulator, AraC family n=1 Tax=B... 148 2e-34 UniRef50_A6AXJ0 HTH-type transcriptional activator RhaS n=2 Tax=... 147 3e-34 UniRef50_A7B0C8 Putative uncharacterized protein n=1 Tax=Ruminoc... 147 3e-34 UniRef50_Q187Y6 AraC-family transcriptional regulator n=7 Tax=Cl... 147 3e-34 UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Strepto... 147 3e-34 UniRef50_C6PBN1 Transcriptional regulator, AraC family n=1 Tax=T... 147 3e-34 UniRef50_Q8YSB8 Transcriptional regulator n=2 Tax=Nostocaceae Re... 147 3e-34 UniRef50_C4Z0X2 Two-component system, response regulator YesN n=... 147 4e-34 UniRef50_C4G7L2 Putative uncharacterized protein n=1 Tax=Abiotro... 146 5e-34 UniRef50_Q184W8 AraC-family transcriptional regulator n=5 Tax=Cl... 146 5e-34 UniRef50_A6LE78 Putative transcriptional regulator n=6 Tax=Bacte... 146 7e-34 UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacte... 146 7e-34 UniRef50_D2MNX8 Transcriptional regulator, AraC family n=1 Tax=B... 146 8e-34 UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=B... 146 9e-34 UniRef50_Q5FIG2 Transcriptional regulator-type n=4 Tax=Lactobaci... 146 9e-34 UniRef50_A6BF68 Putative uncharacterized protein n=1 Tax=Dorea l... 146 9e-34 Sequences not found previously or not previously below threshold: UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligr... 176 6e-43 UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing... 165 1e-39 UniRef50_C6LHD5 Putative transcriptional regulator YfiF n=1 Tax=... 162 1e-38 UniRef50_A8RPA3 Putative uncharacterized protein n=3 Tax=Clostri... 161 3e-38 UniRef50_A7B0D2 Putative uncharacterized protein n=1 Tax=Ruminoc... 160 4e-38 UniRef50_A5ZHU6 Putative uncharacterized protein n=1 Tax=Bactero... 159 1e-37 UniRef50_UPI0001788255 transcriptional regulator, AraC family n=... 158 1e-37 UniRef50_C8P2X0 Putative uncharacterized protein n=1 Tax=Erysipe... 156 5e-37 UniRef50_A8RL67 Putative uncharacterized protein n=1 Tax=Clostri... 156 5e-37 UniRef50_C6D0B3 Transcriptional regulator, AraC family n=1 Tax=P... 156 5e-37 UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=P... 156 8e-37 UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=... 155 1e-36 UniRef50_C9Y4M3 HTH-type transcriptional activator rhaS n=2 Tax=... 155 1e-36 UniRef50_C6J8U5 Putative uncharacterized protein n=1 Tax=Ruminoc... 155 1e-36 UniRef50_A4BH94 Transcriptional regulator, AraC/XylS family prot... 154 2e-36 UniRef50_B6VVW1 Putative uncharacterized protein n=2 Tax=Bactero... 154 3e-36 UniRef50_C6CWE3 Transcriptional regulator, AraC family n=1 Tax=P... 154 3e-36 UniRef50_C6JFK6 Transcriptional regulator n=1 Tax=Ruminococcus s... 154 3e-36 UniRef50_C0EGE3 Putative uncharacterized protein n=2 Tax=Clostri... 153 4e-36 UniRef50_C6D083 Transcriptional regulator, AraC family n=1 Tax=P... 153 4e-36 UniRef50_A5ZUG1 Putative uncharacterized protein n=1 Tax=Ruminoc... 153 4e-36 UniRef50_C6IZN9 AraC family transcriptional regulator n=1 Tax=Pa... 153 4e-36 UniRef50_C9KN89 Transcriptional regulator, AraC family n=1 Tax=M... 153 5e-36 UniRef50_C0EIY9 Putative uncharacterized protein n=1 Tax=Clostri... 153 6e-36 UniRef50_UPI0001788C94 transcriptional regulator, AraC family n=... 153 7e-36 UniRef50_C6CVH4 Transcriptional regulator, AraC family n=1 Tax=P... 153 7e-36 UniRef50_UPI000178921D transcriptional regulator, AraC family n=... 152 9e-36 UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=C... 152 1e-35 UniRef50_UPI0001C368B4 two-component response regulator n=1 Tax=... 151 2e-35 UniRef50_C4LCV7 Transcriptional regulator, AraC family n=1 Tax=T... 151 2e-35 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 151 2e-35 UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacte... 151 3e-35 UniRef50_C0EBM6 Putative uncharacterized protein n=1 Tax=Clostri... 150 3e-35 UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 ... 150 4e-35 UniRef50_C6D3L6 Transcriptional regulator, AraC family n=1 Tax=P... 150 4e-35 UniRef50_C0ECP2 Putative uncharacterized protein n=1 Tax=Clostri... 150 4e-35 UniRef50_C5ET70 Putative uncharacterized protein n=1 Tax=Clostri... 150 5e-35 UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=C... 149 5e-35 UniRef50_UPI000178AA6A transcriptional regulator, AraC family n=... 149 7e-35 UniRef50_C6VNM4 Transcription regulator n=3 Tax=Lactobacillus pl... 149 8e-35 UniRef50_C2LSM7 Transcriptional regulator n=5 Tax=Streptococcus ... 149 8e-35 UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n... 149 1e-34 UniRef50_C9B1F2 Transcriptional regulator n=4 Tax=Enterococcus R... 149 1e-34 UniRef50_C6D3A6 Transcriptional regulator, AraC family n=1 Tax=P... 148 1e-34 UniRef50_C0D4Y3 Putative uncharacterized protein n=1 Tax=Clostri... 148 1e-34 UniRef50_UPI0001788F57 transcriptional regulator, AraC family n=... 148 1e-34 UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=P... 148 1e-34 UniRef50_B8I274 Transcriptional regulator, AraC family n=2 Tax=C... 148 2e-34 UniRef50_C7PB15 Transcriptional regulator, AraC family n=1 Tax=C... 148 2e-34 UniRef50_C9Y024 Putative uncharacterized protein n=1 Tax=Cronoba... 148 2e-34 UniRef50_C6D4D7 Transcriptional regulator, AraC family n=3 Tax=F... 148 2e-34 UniRef50_C6IZJ5 Predicted protein n=1 Tax=Paenibacillus sp. oral... 148 2e-34 UniRef50_B6FJS0 Putative uncharacterized protein n=2 Tax=Clostri... 148 2e-34 UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea l... 148 2e-34 UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=E... 148 2e-34 UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillu... 148 2e-34 UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostri... 147 3e-34 UniRef50_C6D359 Transcriptional regulator, AraC family n=2 Tax=B... 147 3e-34 UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS fami... 147 3e-34 UniRef50_B9Y678 Putative uncharacterized protein n=1 Tax=Holdema... 147 3e-34 UniRef50_UPI0001C35241 AraC family transcriptional regulator n=1... 147 3e-34 UniRef50_C0EAQ5 Putative uncharacterized protein n=1 Tax=Clostri... 147 4e-34 UniRef50_C0EDH7 Putative uncharacterized protein n=1 Tax=Clostri... 147 4e-34 UniRef50_C3RN82 Transcriptional regulator n=2 Tax=Bacteria RepID... 147 4e-34 UniRef50_Q9KBM0 Transcriptional regulator (AraC/XylS family) n=1... 147 4e-34 UniRef50_C6D019 Transcriptional regulator, AraC family n=1 Tax=P... 146 5e-34 UniRef50_C0EHT5 Putative uncharacterized protein n=1 Tax=Clostri... 146 5e-34 UniRef50_C0ECP0 Putative uncharacterized protein n=1 Tax=Clostri... 146 5e-34 UniRef50_C4Z9T9 Ada regulatory protein/6-O-methylguanine-DNA met... 146 5e-34 UniRef50_UPI0001788D00 transcriptional regulator, AraC family n=... 146 6e-34 UniRef50_C4GA22 Putative uncharacterized protein n=1 Tax=Shuttle... 146 7e-34 UniRef50_C9L4N0 Putative transcriptional regulator n=1 Tax=Blaut... 146 7e-34 UniRef50_B7MQA3 Putative AraC-type DNA-binding domain-containing... 146 9e-34 UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostri... 145 1e-33 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 220 bits (562), Expect = 3e-56, Method: Composition-based stats. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF Sbjct: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF Sbjct: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV Sbjct: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 Query: 241 TDGINKTID 249 TDGINKTID Sbjct: 241 TDGINKTID 249 >UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C0B Length = 288 Score = 182 bits (463), Expect = 8e-45, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 13/250 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC--PSKLRIVDIDKKTCL 59 D+ + I R + L V + P R+V Sbjct: 36 DHYELYYLLSGERIYFIKDRSYRVRAGDLVFVDRNAVHKTLDSGRPDHDRLVLYINPELF 95 Query: 60 SFFI---DVNNELPGKFTLDKNGYIAEE---EPPLSLVFSLFEGIKIADSHSLWLKERLC 113 + ++ L F D E +V + + + S WL Sbjct: 96 ADLAVPPELAEGLKEPFGWDVPILRLPSPASEAVERMVGDMVNEMIHPQAGSSWLLRHRT 155 Query: 114 ISLLAMFKKRESVNSFILTNI----NTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 + LL + + + + T + ++ N + L ++AE S + Sbjct: 156 VELLLFAYRSRHLGMVRSADTEPVLHPKTQAVVRYLNDNYRQALTLPEVAEAFRISPHYL 215 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + + G +F++ L R++ A++L+ + SI +A + G+++ S+F FK + Sbjct: 216 SRLFKQTTGFTFSDYLNLLRVKEAQRLLRESDDSITDIAWRSGFSNFSHFGKMFKRTVQL 275 Query: 229 TPSHYFEKII 238 +P Y ++ Sbjct: 276 SPRAYRQQYR 285 >UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWY8_9BACL Length = 293 Score = 180 bits (457), Expect = 4e-44, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 76/256 (29%), Gaps = 14/256 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC-----PSKLRIVDIDKK 56 D + I ++ L ++ + + P + +V+ + Sbjct: 34 DAWEIYYLVSGERCYFIKDQIYRIGAGDLVLIPVNVLHKTSPSGKLSQPHERILVNFRTE 93 Query: 57 TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPL--SLVFSLFEGIKIADSHSLWLKERLCI 114 + EL F ++ EE L L+ + K + L Sbjct: 94 VVSALLPGREEELEQLFAKYPVLRLSAEEQQLVQQLLARMLAEQKQQAGGYEEYCQLLLA 153 Query: 115 SLLAMFKK------RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 LL + ++ I+ + + L D+A + S Sbjct: 154 ELLLNLLRMANARPNHDGEEGGGKRPYREIAEVARYINAHYDENLSLSDLANRFHLSPYY 213 Query: 169 IKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + R G + + R+ A L+ + +A + GY S ++F FK Sbjct: 214 LSHLFPRVTGLTLVAYINRVRIEEACALLRETELPVTEIAYRVGYQSGTHFGRVFKKAKA 273 Query: 228 VTPSHYFEKIIGVTDG 243 V+P Y + ++ G Sbjct: 274 VSPQSYRREQRMLSGG 289 >UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR78_9CLOT Length = 281 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 8/241 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI---VDIDKKTCL 59 Y + + IN+ + + + I+ + PS + + T Sbjct: 40 YYEIYYLLSGKCKMFINQDIYYLEPGDMTIIPPLEVHKALYEPSWEAERFGIYFSRDTVT 99 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEE--EPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 SF E G I E L+ + + K DS+ L +L Sbjct: 100 SFLSLCGREAFGHIFSQPKRTIPSEFRPKIEELLAQMQDEEKQGDSYCQIQLCSLLHQIL 159 Query: 118 AMFKKRESVNSF--ILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 + + + L + ++ + + L +A S + K+ + Sbjct: 160 VVLGRCQEARREGHALEEAEEAMVRAARYMNQHYQEGVTLGQVAAFANMSPTYFSKKFKS 219 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G F E L R++ A ++ + S+ VA CG++ +YF F+ GV+P Y Sbjct: 220 STGLCFKEYLNYIRVQKASDMLRNTDLSVTGVAMACGFSDGNYFGDVFRRLTGVSPREYR 279 Query: 235 E 235 + Sbjct: 280 K 280 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 9/244 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI-VDIDKKTCLS 60 + I+ + F K L IV + + I + + Sbjct: 31 PFNEIFYLSSGECTSFIDHNIYKFGKGDLVIVPSGCLHRTTYNGKGMHERIVISFRNEAT 90 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEP----PLSLVFSLFEGIKIADSHSLWLKERLCISL 116 +I K G + E ++L+ L D S + I L Sbjct: 91 EWIQNQTGKELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIEL 150 Query: 117 LAMFKKRESVNSFILTN---INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 L + ++ ++ N ++ I + L+ +A+ S S + K+ Sbjct: 151 LLFIIRCKNYEENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKF 210 Query: 174 R-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + G F E + + R++ A L+ + SI +A +CG+N ++YF AF+ G++P Sbjct: 211 KTATGFGFKEYIINVRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPHK 270 Query: 233 YFEK 236 Y + Sbjct: 271 YRKN 274 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 4/235 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-KLRIVDIDKKTCLS 60 D+ + + + I+ + L +V+ E LR++ + + Sbjct: 41 DFCEILYVAGGAGEAILEGKKFRLAPGDLVVVNPGTLHEERSDAKAPLRLIFLAIRDFAV 100 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + K+ + G + + L + + + L +LL + Sbjct: 101 PGLPAGCLSQEKYRVLSCGEYRYKMDIY--LRELLQETSSQIEFYQEISQGLVSALLVLV 158 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTS 179 + +N ++ KI + N L ++E +Y S+ + + G S Sbjct: 159 MRLIRINPEDEAALSQECQKIKEYLDQNFTSPITLDSLSETVYISKHYLSHLFKEQTGVS 218 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 + L RM A +L++ ++ V++ GY + YF FK YG++P Y Sbjct: 219 PIKYLTSKRMEKACELLSETELPVSEVSKAVGYENPLYFSQVFKRIYGISPVKYR 273 >UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SGH8_9FIRM Length = 288 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 85/243 (34%), Gaps = 9/243 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + ++ K + + IV+ ++ + + + F Sbjct: 42 TELFYCLSGEGQFYLAGQLFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVASMEFLF 101 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 + F +N E ++L+ L + + + L LL + Sbjct: 102 SKADTNYAIFNCRENR-----ERMVTLLHMLLAEADRSLDGCETVCQDLLEVLLIWLVRC 156 Query: 124 ESVNSFILT---NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 +++ + N +I + N L +AEL + ++ + + E G S Sbjct: 157 TTISLQLEEAAPTENRECAEIKRYLDTNYREDISLDLLAELAHLNKYYLAHTFQREYGIS 216 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 L R+ +K ++ + YS+ +++ G++S SYF F+ G+TP+ Y + Sbjct: 217 PITYLNRRRIEESKHMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGMTPNEYRRQTRQ 276 Query: 240 VTD 242 Sbjct: 277 GKR 279 >UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIK0_9FIRM Length = 615 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 83/232 (35%), Gaps = 5/232 (2%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKKTCLSF 61 + II + + I + R + + + Sbjct: 35 FFEIYYLEQGRRQHIIEDSQYILQPDEFIIFPPFVMHHSFEENDVPFRRLLLYFNPEVIR 94 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + L + + K A+ P +L+ + + + D +S L + +L Sbjct: 95 SPQILRTLSERARVYKLP-RAQSAPIYNLMKDILQEQERDDLYSRELITLMVNALALQLV 153 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 + + + I + + L+ +A Y S+ + + + ++ Sbjct: 154 R--NSDEAARPEQRNRVTDIINYLHEHFTEDITLEQLANHFYVSQYHLCREFKRYTSSTI 211 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + + + R+ +A++L+ + YSI ++++ G+++ ++F +K G++PS Sbjct: 212 VQYIHNLRVLHAQRLLQESDYSITEISKRVGFSNVTHFNRVYKSVTGMSPSQ 263 >UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQL5_9FIRM Length = 290 Score = 176 bits (446), Expect = 7e-43, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 8/247 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDIDKKTCL 59 Y + + I++ + K I+ + + K+ Sbjct: 42 YYEIYYLLSGQCRMFIDQDIYYLKPGDAVIIPPLQIHRALYEEGLQAERYDMYFTKEEAD 101 Query: 60 SFFIDVNNE-LPGKFTLDKNGYIAEEEPPLS-LVFSLFEGIKIADSHSLWLKERLCISLL 117 +F E F + P + L+ L D++S ++ L +L Sbjct: 102 AFHASCGREGFERVFLNPRIAIPQPLRPGIEGLLSHLSHENGQEDAYSHVQQQSLLFQIL 161 Query: 118 AMFKKRESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 + + + + ++ K I+ L +A + S + ++ R Sbjct: 162 VLIGRCQDTQQEKDSLNDSEAAIVKAARYINLQYREHLTLDAMAAMSNMSPTYFSRKFRA 221 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G F E + R++ A L+ + ++ +A CG++ +YF FK G++P Y Sbjct: 222 STGFCFKEYVNYIRVQKASDLLRNTDGTVTSIAIACGFSDGNYFGDVFKKLTGLSPREYR 281 Query: 235 EKIIGVT 241 I G T Sbjct: 282 NGIRGDT 288 >UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9LA22_RUMHA Length = 277 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + + I + I +KN L +++ I + I F Sbjct: 41 FSELFFVTKGTGYFQIEGKQIPVQKNDLILINPNIPHTEFGNKEQPWEY-IALGIEGVQF 99 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 E P +++ E + +L + I+ + + L +L + Sbjct: 100 QYSEKEAPYSYSVF--SLSREHREIPWYLSTLVKEIQTQQEGYQTICQNLLELILLSVAR 157 Query: 123 --RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 R+ S + I+ + L ++ L++ ++ + ++ G S Sbjct: 158 STRQEFLSAPRQKTTRECRLVEQYINEHYHEDITLDTLSALVHINKYYLVHAFKNYKGVS 217 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 L R+ A+ L+ S +YS+ + + G++S SYF F+ G TP+ Y +K Sbjct: 218 PINYLIQRRVEEARYLLESTNYSVTKIGEISGFSSQSYFSQTFRRLTGTTPNAYRKK 274 >UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHF4_9FIRM Length = 291 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 20/254 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D++ + I R+ + + I++ + + + C Sbjct: 36 DFIEMAFILSGHGKYKIADRLYDVSEGDIIILNPGQKHQALCTDPSNPATEFFVGLCDVR 95 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPL-------SLVFSLFEGIKIADSH-----SLWLK 109 F D D A + P L +F + + + + + LK Sbjct: 96 FGDFPENYLPLHLKDLTSDPATQSPILHTSGELRQKLFKICTAMSVENDVCRSGRYIMLK 155 Query: 110 ERLCISLLAMFKKRESVN------SFILTNINTFTCKITGIISFNIERQWHLKDIAELIY 163 L L+ + +++ SF T+ +I + + L IAE +Y Sbjct: 156 SYLMQMLILLLREQSEPVKINTGCSFESTSKKYVVDQIVNYFEDHYSEKISLDQIAENMY 215 Query: 164 TSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSN-SYSINVVAQKCGYNSTSYFICA 221 S I + + + G + L + R+ AK+L+ + SI VA K GY+ +F Sbjct: 216 LSPFYISRIFKSETGDTPIRHLINIRLEKAKELLENGFDGSIQEVAAKVGYDDVYHFSKL 275 Query: 222 FKDYYGVTPSHYFE 235 FK +G+ PS Sbjct: 276 FKKRFGMPPSKIRR 289 >UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C356F7 Length = 268 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 10/243 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + + IN + + + + S + + + Sbjct: 23 THYEFYYLYSGHCKIFINHTLYYVEPGDIIFLKPGEIHRTTYHSSPVNE-RVTISFDGEY 81 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEP------PLSLVFSLFEGIKIADSHSLWLKERLCIS 115 + + P L+ + D S +K+ Sbjct: 82 LDSMKELCGEENVEYIFRNSKVTVPNGNRSRVEELIRRIEYEETGQDGFSPLMKKGCFYE 141 Query: 116 LLAMFKK--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 LL + + L I + + L+++AEL + S + ++ Sbjct: 142 LLVSLSRCQEAETDHGRLEIGEETIEAAAKYIYDHYQNPITLEEVAELSHMSPAYFSRKF 201 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + G + E L + R+R A +L+ ++ S+ +A +CG+ +YF AF+ GV+P Sbjct: 202 KAVTGFGYKEYLTNIRIREASRLLLHSACSVTEIADRCGFGDGNYFGDAFRKAKGVSPRA 261 Query: 233 YFE 235 + + Sbjct: 262 FRK 264 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 13/247 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDID------- 54 D++ S + ++I K+ LF++ ++V + Sbjct: 37 DFIEISYVEEGSGYHYVEDQLIPIKRGDLFVIPIGTSHVFRPSSQDNQLVIYNCIFRTCL 96 Query: 55 ---KKTCLSFFIDVNNELPGKFTLDKNGYIAEEE-PPLSLVFSLFEGIKIADSHSLWLKE 110 K+ + +++ L G K ++ LS++ +F +L Sbjct: 97 LEQLKSVICESTKLHSLLYGSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRYEFLMM 156 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 I +LAM ++ E S + T N I+ + ++ +AE + S S + Sbjct: 157 GQLIQVLAMLQRYECDGSMVSTPTNN-MDDAIQYINDHFATNLTVQQVAERSFMSPSHFQ 215 Query: 171 KRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G +F + L++ R++ +L+ S SI A + GY +F F+ GVT Sbjct: 216 RLFKKTTGVTFMQFLQNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRKKTGVT 275 Query: 230 PSHYFEK 236 P Y Sbjct: 276 PREYRRS 282 >UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KSF8_CLOPH Length = 292 Score = 173 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 91/257 (35%), Gaps = 12/257 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + + I+ K + + + + + + + +V+ Sbjct: 36 DFTELTYILSGTSKYRIDDIYYDVKAGDMIVCNPGVFHQNMLLDGEEPLVEFCTGFTDFQ 95 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPL--SLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 F ++ +++ E L + + + ++ + I +L + Sbjct: 96 FKNMPENTIQLSNQGHIVHLSSEAKRETSRLCYDMLAENEAGQVGKYFMLKAQLIQMLML 155 Query: 120 FKKRESVNSFILTN--------INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + + + +I + N E + L IA +Y S I K Sbjct: 156 LMREVIEAPKVTQKGCNFETYSKSYAVKRIINYLMENYEHKISLDQIAHNMYLSPVYISK 215 Query: 172 RLRDE-GTSFTEILRDTRMRYAKKLITSNSY-SINVVAQKCGYNSTSYFICAFKDYYGVT 229 ++E G S L R+ AK++++ SI +A + GY+ +F FK Y+G++ Sbjct: 216 IFKEETGESPINYLIKIRLEKAKEILSEREGGSIKNIANEIGYDDVYHFSKLFKKYFGIS 275 Query: 230 PSHYFEKIIGVTDGINK 246 P +Y + +I ++ Sbjct: 276 PQNYRKSLIAQRTTESQ 292 >UniRef50_UPI0001787F16 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787F16 Length = 280 Score = 173 bits (438), Expect = 7e-42, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDIDKKTC 58 Y + ++ V + KK L IV+ + ++ + Sbjct: 36 PYFELYYLLNGERVYFMDDNVFTVKKGDLMIVNPHDLHSTASSEKLLFERVLIGFSRTFI 95 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 V N L + + + L+ S+ + +H L L LL Sbjct: 96 EQGDAGVANLLDHGTSRLIRIPLKHQPEIERLLHSMLAECQTEQTHYSSLVRSLMNELLI 155 Query: 119 MFKKRE----SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL- 173 + E S ++ +I I N + L+ +A+ Y S S + + Sbjct: 156 RLHRIETTLQSQTHEYEHPMHQKISEIAQYIKSNFHEKLTLEQVAKQFYISPSYLSRVFT 215 Query: 174 RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 R G F E ++ R+R A+K++ S+ S+ ++++ G+ ++F FK G TP Y Sbjct: 216 RLTGFHFREYVQVVRIREAQKMLVSSRDSVQIISELAGFEHIAHFNKTFKKIAGTTPLQY 275 Query: 234 FEKI 237 ++ Sbjct: 276 RKRH 279 >UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Ruminococcaceae RepID=C7H5Z6_9FIRM Length = 319 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 88/243 (36%), Gaps = 9/243 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + +++ ++ K + + IV+ ++ + + + + Sbjct: 73 TELFYCLSGEGQFLLSGQLFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVSGIEILF 132 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 + F +N E ++L+ L + + + L LL + Sbjct: 133 GKADSTYAIFNCRENR-----ERMVTLLHMLLAEADRSLDGCETVCQDLLEVLLIWLVRC 187 Query: 124 ESVN---SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTS 179 +++ + N +I + N + L +AE+ + ++ + + G S Sbjct: 188 TTLSLQVEESPRSDNRECVEIKRYLDNNYREEISLDTLAEVAHINKYYLAHTFQKAYGIS 247 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 L R+ +K ++ + YS+ +++ G++S SYF F+ G+TP+ Y ++ Sbjct: 248 PITYLNRRRIEESKYMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGLTPNEYRRQVRQ 307 Query: 240 VTD 242 Sbjct: 308 GQR 310 >UniRef50_C6D8V3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8V3_PAESJ Length = 309 Score = 170 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 20/268 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP---VCPSKLRIVDIDKKTC 58 D+ + I + + N+ VI+ +K L ++ + L P ++ V+ + C Sbjct: 40 DWTEFMYVISGNCTVETNKDVIAMRKGDLIMLDAGVPHRLIVESGSPCRMLNVEFGFQPC 99 Query: 59 LSFFIDVNNELPGK-----------FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 + +N T+ Y + +LVF L G + + Sbjct: 100 DGIYPSMNQLANHNPMFSKLLEQRLDTIVLRDYEDIQVNLRNLVFELDLGGEGKEQGREM 159 Query: 108 LKERLCISLLAMFKKRESVN--SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + L LL + +V + I+ + + T I + KDIA + Sbjct: 160 MTNLLMSQLLVRVGRLVAVEAKNSTERQIHHYVRQATEYIHQYYDTAIQAKDIAAAVNLH 219 Query: 166 ESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 +++ + + + E L D RM AK L+ I VA G NS YF FK Sbjct: 220 PVYLQRIFKSNMNKTINEYLVDLRMDKAKMLLARTDVPIIEVADHIGLNSRQYFSMLFKK 279 Query: 225 YYGVTPSHYFEK---IIGVTDGINKTID 249 G++P+ Y + I TD + +D Sbjct: 280 MTGISPAEYRKSKNTISSWTDYEVEIVD 307 >UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=A3DHI5_CLOTH Length = 302 Score = 170 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 16/251 (6%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV-CPSKLRIVDIDKKTCLSFF 62 V I N + I+ + V S + + K F Sbjct: 48 FEMVYIKRGKAVFEIAGYPAEIGPNDIIIIKPNQPHKFIVKSESGCEFIVLSFKFVNRFD 107 Query: 63 IDVNNELPGKFTLDKNGY---------IAEEEPPLSLVFSLFEGIKIADSHSLWLKERLC 113 ++ F +G ++++ + L+ + + + D S +L L Sbjct: 108 GQYSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRILKERENPDIGSEFLNYLLV 167 Query: 114 ISLLAMFKKR-----ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 + L + + E+ I I+ N ER LKDIA ++ S S Sbjct: 168 MELFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNYERDISLKDIARYVFLSTSY 227 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + ++E G S L R+ AK+L+ I+ +A G+++ F FK Y Sbjct: 228 FTRAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIALSVGFSNQQRFNDIFKKYVK 287 Query: 228 VTPSHYFEKII 238 +TP Y + + Sbjct: 288 LTPLQYRKNVQ 298 >UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL10_BACSK Length = 298 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 77/243 (31%), Gaps = 10/243 (4%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCP-SKLRIVDIDKKTCLSFFI 63 + + S + + KK + + R L V ++ V+ + + F Sbjct: 39 ECMHVLSGSCKVETDEGSYQLKKGQIIFLDAGTRHRLIVSERCRMFNVEFSFEQGCTAFP 98 Query: 64 DVNNELPGK-------FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 + + + + L + + ++ + L Sbjct: 99 PFFKLCKENRALGNMVNKQASQLLLHDTDDTYQCLRRLILEVDKKSEQTDFMVQLLLSEY 158 Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD- 175 L + + + + I N +R+ + DIA ++ +++ + Sbjct: 159 LIRIAELAEA-KVAEPDQQAYVKRALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKAF 217 Query: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G S E L R+ AK ++ SI + G NS YF FK + TPS Y + Sbjct: 218 TGKSIHEFLISYRINKAKAMLKQTDISITDIPHYIGMNSQQYFSTTFKKHVKCTPSEYRK 277 Query: 236 KII 238 + Sbjct: 278 RHQ 280 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 7/246 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRREL-PVCPSKLRIVDIDKKTCL- 59 Y + + +IN + ++ C S ++ ++ Sbjct: 33 PYYEIYFLLSGNCSALINHSIYHLVPGDFVLIPQSAMHRFVYDCNSTVKRYNLFFTMDFA 92 Query: 60 --SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF--EGIKIADSHSLWLKERLCIS 115 F D + L F + + + +F E + + + + Sbjct: 93 ASLFHSDTKDILEHLFHYPVLHLTSLLQGNATRLFDTLYQETVGQDSCSQAVIPAYISLI 152 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 L + + R+ + L + IS + + L +A+ ++ S + K+ + Sbjct: 153 LSLLVRNRDHIQLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYYSKKFKQ 212 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G F E L TR+ A +L+T S ++ +A +CG+N +YF AF+ +G++P Y Sbjct: 213 ITGVGFKEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGLSPLQYR 272 Query: 235 EKIIGV 240 ++ + Sbjct: 273 KRQKNL 278 >UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CH60_9FIRM Length = 278 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 82/237 (34%), Gaps = 8/237 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + + + K L I+ + K + +SF Sbjct: 41 FTELFYVVSGEGKFLFRNETHHIKTGDLVIIPPYLEHTEQSVKGKSLEYYVIGIDKISFL 100 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 + G+ + ++ + + ++ D S + + L L+ + Sbjct: 101 AE-----NGQTGIQAFCNFRDQSSVSDIFAQMLYEMRNDDYGSEIICQNLLEILILRIIR 155 Query: 123 RESVN--SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 + + S + +I + N + L + L + ++ + G S Sbjct: 156 SQRLIPISINSERMTKECAQIKEYLDTNYTERITLDTLTSLTHMNKYYMAHSFAKYAGLS 215 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + L R++ A L+ +S++ +A G++S SYF +F+ YYG+TP Y ++ Sbjct: 216 PIQYLNRRRLKIACTLLRDTDHSVSDIASSTGFSSQSYFTQSFRKYYGMTPLQYRQQ 272 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 98/244 (40%), Gaps = 11/244 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRREL-PVCPSKLRIVDIDKKTCLS 60 D V +++++ + +L I+ + K+R + + Sbjct: 29 DCYELVYLFSGECNILVSHTIYRMVPGTLVIIPPGEIHKTSYGSNDKVRQQRTALRFSIK 88 Query: 61 FFIDVNNELPGKFTLDK------NGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCI 114 + + L F D +E +L+ + ++ D S+ + + L Sbjct: 89 DTDWLCSALGKDFVKDNLTAGIIEVPDKRKEYIENLITRMIYENQMPDELSMGMVKTLFQ 148 Query: 115 SLLAMFKKRE---SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + + + ++ + N+ + + N ++Q +L D+A+ S S + K Sbjct: 149 EFMIFVLRCKLYGDTSAHEIDAQNSTIQDVATYVYNNYDKQIYLDDVAKQFSISRSYLSK 208 Query: 172 RLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + + G F E L + R++ A +L+ ++SI +A CG+N ++YF AF+ G++P Sbjct: 209 KFKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDIAFACGFNDSNYFGDAFRRIKGISP 268 Query: 231 SHYF 234 + Y Sbjct: 269 NKYR 272 >UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ3_ALKMQ Length = 282 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 90/244 (36%), Gaps = 10/244 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI-----VDIDKK 56 D + I R+ K +L +++ + ++ + D Sbjct: 35 DQYEIYYLLSGERHYFIKDRIFHVKSGTLVLINRQDVHRTTDADTQDHVRVLLNFSKDYL 94 Query: 57 TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 + I + + L AE++ L+ + I+ + + L + L Sbjct: 95 LSSPYVIALLDGLFMNNNYVIPFLSAEQQYVEVLLDKMIHEIEHQSTGFQVALQALLMDL 154 Query: 117 LAMFKKRESVNS----FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 L + N + ++ +I I+ N + L +A+ + S+ + + Sbjct: 155 LVYTSRYIESNRHDVLAPPSQVHEKISQIVQYINTNYQTPLTLSSVAQNFFVSQYYLSRT 214 Query: 173 LRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G +F E + + R+R A++L+ ++ + +++ G+ S S+F FK+ +P Sbjct: 215 FKQATGFTFVEYINNIRIREAQRLLRETNHKVIDISEAVGFGSISHFGRVFKEVTRFSPL 274 Query: 232 HYFE 235 +Y Sbjct: 275 NYRR 278 >UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF5_PAESJ Length = 294 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 83/253 (32%), Gaps = 16/253 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVD-------ID 54 D + ++ + ++ + + V+ V K D + Sbjct: 39 DELELLLVTEGTAVFRVDLQDYELQAGEAIFVNSGELHSGYVVGGKPCSFDAVVFHSSLF 98 Query: 55 KKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPP----LSLVFSLFEGIKIADSHSLWLKE 110 + + D + + ++ E P L+++ +FE + + S + Sbjct: 99 SSGSIDYLFDRYISPVLEKRYEVPAHLRREPGPGMELLAMLDQIFEVHRNEQAASELTIK 158 Query: 111 RLCISLLAMFKKRESVNSFILTNIN----TFTCKITGIISFNIERQWHLKDIAELIYTSE 166 L S+LA + + + I N L+ +AEL SE Sbjct: 159 GLLFSILAKLVSLGKPSVRVKPEQEGYRIERLKTVIEYIEQNYAEPIPLQKLAELARMSE 218 Query: 167 SLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 S + + S E + R++ A + I VA G+NS SYF F+ Sbjct: 219 SYFCRFFKRITTKSPIEYMNSYRVQQAASRLRQTDAKIMEVALDVGFNSLSYFNTVFRQR 278 Query: 226 YGVTPSHYFEKII 238 +G TP Y ++ Sbjct: 279 FGCTPREYRSRLQ 291 >UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017894C2 Length = 310 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 85/258 (32%), Gaps = 23/258 (8%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV---DIDKKTC 58 DY +F + ++V +K +F++ + + P + + + Sbjct: 50 DYFQIWYVAKGAFLHTVQQQVYEIRKGDIFVIPPFTLHSVSISPDEDIEIYGCEFMPSFV 109 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEP--------------PLSLVFSLFEGIKIADSH 104 F + + ++ +E +++ + + Sbjct: 110 NERFQEQPTDHAFFDVAFLEYFLRKEMNAQSQITLDSVTDVTVRNVLKDMLIEYERRTPF 169 Query: 105 SLWLKERLCISLLAMFKKRESVNS-----FILTNINTFTCKITGIISFNIERQWHLKDIA 159 + + LL++ ++ + ++ I + + +L D+ Sbjct: 170 FQISLKAKLLVLLSILARQVNGELLREGFEKSEKYREIMTRVVDHIHNHYQEDMNLNDLC 229 Query: 160 ELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 L S S ++ G +F L D R+ A ++ S+ V G+N SYF Sbjct: 230 SLSNLSRSTFCILFKEWTGKTFNRYLTDLRILQAMMMLKQPELSVTDVCYSTGFNELSYF 289 Query: 219 ICAFKDYYGVTPSHYFEK 236 FK Y G++P+ + ++ Sbjct: 290 CRIFKKYTGISPTDFRKQ 307 >UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGN7_9CLOT Length = 326 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 91/251 (36%), Gaps = 16/251 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCL-- 59 + + S N I+ ++ + +++ + + +I + Sbjct: 75 TFYELMYVYRGSCVNHFNENTITIQEGEMLLLNPNTAHCPETLTDQDCVFNIMFRQNFFQ 134 Query: 60 ----------SFFIDVNNELPGKFTLDKNGYIAEEEPPLS-LVFSLFEGIKIADSHSLWL 108 + F E + ++ ++ + + L S + Sbjct: 135 YSLDLLLKDNTLFSSFFMECMFQSSIARDYLFFLPGKASADTIERLIVECFEKQSCYETI 194 Query: 109 KERLCISLLAMFKKR-ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 + L + L A + ++ S+ N KI I + L+ ++E S + Sbjct: 195 TQSLLVELFAYLARNSDNSFSYPKNNHERLILKIITYIQESPAE-ITLQKVSEQFQYSTA 253 Query: 168 LIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + + ++ G +F+EI+RD R+ AK + S+S SI +A GYN S+F FK Sbjct: 254 YLSRMIKQYTGKNFSEIVRDCRLTKAKYYLESSSLSILDIALILGYNDVSHFYKVFKQEI 313 Query: 227 GVTPSHYFEKI 237 G TP+ Y + Sbjct: 314 GCTPTEYRKHY 324 >UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KLS8_CLOPH Length = 277 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 82/246 (33%), Gaps = 12/246 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDIDKKTCL 59 + + + +N + + K L ++ + + + K Sbjct: 28 FYEMYYLLSGTRRFFVNDTLYNVSKGELILIEEGALHRTTYISGGSHERICITFSKSFLQ 87 Query: 60 SFFIDVNNE-LPGKFTLDKNGYIAEEEPPLS-LVFSLFEGIKIADSHSLWLKERLCISL- 116 F + E + F+ L+ + D++SL+L L Sbjct: 88 PLFQEFGEEAVLKCFSQPYVRIPQSRREYFEDLISKAHREMMYQDTYSLYLASSHVYELI 147 Query: 117 -----LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 L K++ + + + + K I N + L++ A S + K Sbjct: 148 LFILRLNSISKQDDITPYDASPDDQIMEKAAKYICSNYQSPVTLEETAAYCNMSTTYFSK 207 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + + G F E L R+R A +L+ I +A G+N ++YF FK G++P Sbjct: 208 KFKAVTGFGFKEYLISIRIREASRLLLHTKLPITEIALLSGFNDSNYFGDVFKRMKGISP 267 Query: 231 SHYFEK 236 Y + Sbjct: 268 CKYRKN 273 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 89/242 (36%), Gaps = 9/242 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR--ELPVCPSKLRIVDIDKKTCLS 60 + + I +F + IN + + +V+ C + + + + + Sbjct: 40 ELELIHIISGTFHVTINETTRNAVPGDILLVNSGGLHGGTPYDCVYECLVFPVSLLSSQT 99 Query: 61 FFIDVNNELPGKFTLDKNGYIA-EEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + + N L + + + A ++ SL+ LF ++ +D L + + Sbjct: 100 YASEFLNRLDRQDLILDEYFPAGDDTAIHSLLERLFALMQDSDEGGKLQCLGLLYQFMGL 159 Query: 120 FKKRESVNSFILTNINT-----FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 + + ++++T + I + + L ++A S Sbjct: 160 LLQDRRYTASDKSDLSTHRNIYLLKNVLNYIEAHYTEKITLHELARTAGMSSKYFCHFFS 219 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + G + + + R+ A L+ +SI +A CG+N SYF AFK Y G++P Y Sbjct: 220 EMTGRTPIDYVNYYRVERACCLLAGIGHSITDIAMLCGFNDVSYFTRAFKKYKGISPGQY 279 Query: 234 FE 235 + Sbjct: 280 LK 281 >UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coprococcus RepID=A8SQD4_9FIRM Length = 300 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 80/244 (32%), Gaps = 10/244 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + + I+ + + + S+FI S + + + + Sbjct: 38 DEMEIIYVRKGPLTVEIDGQKFTGEDGSVFIASPGVLHMMSAPDTPVDYFTFIFPLEFIS 97 Query: 62 FIDVNNELPGKF--TLDKNGYIAEEEPPLSLVFSLF-------EGIKIADSHSLWLKERL 112 F + F + E L+ L E +H Sbjct: 98 FQTKDALEDEVFFPLRNHTRGFRPEVADRKLLGKLIPILDELVEENGKMGTHRQIQVRIR 157 Query: 113 CISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 + ++ + + + +I I N L +++E + SE + + Sbjct: 158 LLQMMDLLVEYSQLEELTRNASGELEKEILLYIQDNYHDNIGLAELSEHFHLSEKYMSRL 217 Query: 173 LRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + + T+ + R+RYA+ L+ S S+ +A K GY + SYFI F G +P Sbjct: 218 FSERFHMTLTQYVNYVRLRYARHLLESTDLSVTEIAMKSGYQNVSYFIRRFSSAMGESPL 277 Query: 232 HYFE 235 Y Sbjct: 278 RYRN 281 >UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5P5_PAESJ Length = 276 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 91/241 (37%), Gaps = 9/241 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF-- 61 + + I R + + + I+S I + I Sbjct: 34 YEIFCLMSGKREFFIKDRTLVIHEGDIVIISPNILHRTTNTETPEHERLIVNIHEKHMAA 93 Query: 62 --FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 ++DV + L + L + + +++ ++ + L + LL + Sbjct: 94 GSYVDVLHPLSEREYLIVKCTLQDRLAIETMLQTMIAEMSEKKPGFELYALTLALQLLLI 153 Query: 120 FKKRESVNS----FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 + +S + ++ ++ ++ + + L +AE Y S + + ++ Sbjct: 154 CCRHAKSSSMETLESPSPMHERISEVVRYMNSHYMNELSLHLLAEKFYVSPYYLSRFFKE 213 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G +F E L R++ AKKL+ +S +N++A++ G+ S ++F FK G P HY Sbjct: 214 ATGFTFVEYLNSVRIKEAKKLLEQSSMKVNLIAKRVGFGSVTHFGRVFKSVTGYVPLHYR 273 Query: 235 E 235 + Sbjct: 274 K 274 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 166 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 1/237 (0%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M Y+CS++ + SF + I + I FKK + ++ ++ L IVD+++KT Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 FF + P Y+ E SL+ +L + ++ ++ ++ LA+ Sbjct: 61 FFKNY-TLSPFSVRRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVL 119 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + V SF+ ++N+ CK+ II +I W L DI+ +Y SESL+K++L+DEG SF Sbjct: 120 SSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSF 179 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 ++++ + RM A++L+ +++++ VA CGY++ SYF+ F+ Y+GV P Y + Sbjct: 180 SKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSRF 236 >UniRef50_Q5WL40 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL40_BACSK Length = 323 Score = 166 bits (421), Expect = 7e-40, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 105/256 (41%), Gaps = 18/256 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS- 60 DY+ S I R + +K L +++ I E+ C ++ I++ + Sbjct: 66 DYIEMNYVYNGSLKQTIGDRAVELQKGELVVLNQHIEHEIEACGTEDIIINFIIQPSFFN 125 Query: 61 -----------FFIDVNNELPGKFTLDKNGYIA--EEEPPLSLVFSLFEGIKIADSHSLW 107 F+ + + + G L + Y +E L+ + E + D++S Sbjct: 126 YIFSFLNVEGPFYSFLIDSIHGSEPLGQFLYFKCAKEASVQQLLRKMVEEMMEPDAYSQA 185 Query: 108 LKERLCISLLAMFKKRESVN--SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + L+ K+ + L+ N + + I + L ++A+ + Sbjct: 186 SIKLYVGMLMIELAKKANTLDGKQKLSLHNQWIRQTFAYIDEQYKHA-SLYELAKRLNQP 244 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 L+ K ++ G +F +L++ R+ AK+L+ + ++V+AQ+ GY++ SYF FK Sbjct: 245 HYLLSKVIKKQTGKTFKALLQERRLDIAKELLVQSDLPVSVIAQEIGYDNFSYFYQIFKK 304 Query: 225 YYGVTPSHYFEKIIGV 240 ++ TP Y +K Sbjct: 305 HFHTTPLVYRKKHASS 320 >UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I9Z9_9CLOT Length = 284 Score = 166 bits (420), Expect = 9e-40, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 12/245 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKKTCLS 60 D++ S D +I + KK + I + + EL + R + I T L+ Sbjct: 39 DFIELSFITSGSVDYLIEGEKYTLKKGQVLISNPGVYHQELFEANTNCRELHIGL-TNLN 97 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 F +V + + + ++ L + E K + S ++ + L + LL + Sbjct: 98 LFSNVKKDYIDIGNKNVLTFTKYKDEILKSCLEIVEEQKTYNQTSPFMLKSLVMKLLVLL 157 Query: 121 KKRESVN---------SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + + SF IT ++ N L +++ +Y S I K Sbjct: 158 YREINEEDTTRDSKEFSFKSREKKALVESITKYLTENYTEDISLYTLSKNMYLSPVYISK 217 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 ++ G S L R+ AK+L+ + SI +A+ GY+ YF +K YYGV+P Sbjct: 218 IFKELMGDSPINYLIQIRLSKAKELLDDSKLSIKSIAKMVGYSDPYYFSKLYKKYYGVSP 277 Query: 231 SHYFE 235 + Sbjct: 278 NKSRN 282 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 165 bits (419), Expect = 9e-40, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 143/233 (61%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M +VCSVV +C+S D+ ++ ++ K+SL ++ +K+ +P S +R ++ID+ + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + + + ++ + +PPL LV ++F+ A++ + L L S L++F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + + + +INT + K+ IIS + R+W+L+D+AE +YTSESLIKK+L+DE TSF Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++IL +RM AK L+ N + V+A+KCGY+STSYFI F+ YYGVTP Y Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQY 233 >UniRef50_C0EDI6 Putative uncharacterized protein n=2 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDI6_9CLOT Length = 371 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 93/261 (35%), Gaps = 22/261 (8%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDI-------- 53 D+ V + S +++ R I ++ +++ ++ ++ Sbjct: 107 DFFELVYVVRGSMKNVVDGRRILLEQGDFCLMNPNAVHQVETDGKDPLAINFLMKKELFN 166 Query: 54 ---------DKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSH 104 ++ F + ++ + L + EE + +F + + Sbjct: 167 KAFLSIVLENELFANFFVDSIYHKKNKQNYLVFSARHLEEPIISQYLLQIFREYENDQLY 226 Query: 105 SLWLKERLCISLLAMF---KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAEL 161 S + E L F KRE + KI +S N L+ A+ Sbjct: 227 SQRVIESAMSCLFVEFTRSYKRELEFESLQDLPGGNISKIISYLSENYRTA-TLQTTAKQ 285 Query: 162 IYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 + L+ G SF+EI++ R+ +A +L+ I+ VAQ+ GY + +YF Sbjct: 286 FNYHPKYLPNLLKKYLGQSFSEIVQQFRLAHACELLKQTELPISDVAQESGYTNRTYFYK 345 Query: 221 AFKDYYGVTPSHYFEKIIGVT 241 F+ +G++P+ Y + Sbjct: 346 VFQQKFGMSPNDYRHQNQAPR 366 >UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM0_9FIRM Length = 248 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 3/232 (1%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFID 64 ++ I+ + I + L + Sbjct: 9 EIILVTGGRGSFNIDTGHYLASPGDVLFFDSGILHDETTIDGDLATSCLGVSDFQLPGRR 68 Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRE 124 N + + + + +F + +A L + C L + ++ Sbjct: 69 ANEMVGR--LYAPQLSLDAQFDAVRTLFHTAVQLALAGDAPCVLDQLTCAILCKLDEELA 126 Query: 125 SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEI 183 + + I + L+ IA + + + R+ G S + Sbjct: 127 RHGQPPRPQQESLGLTVKAYIDAHYRESITLQSIAAELNFNPYYLAHAFREHIGYSPMQY 186 Query: 184 LRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R+ A+ L+ SI +A CGYN+++YF FK G+TP Y Sbjct: 187 IIRRRIGEAQNLLIGTDRSITEIAFSCGYNNSNYFQSVFKRLVGMTPGQYRR 238 >UniRef50_A8RIS8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIS8_9CLOT Length = 285 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 87/251 (34%), Gaps = 15/251 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP---VCPSKLRIVDIDKKTCL 59 + I+RR SL + + + ++ +D+ Sbjct: 34 EYEIYYLLEGQRYYFIDRRTYHVTGGSLVFIDRNQIHQTSQAGPGSHERILISLDQNPFS 93 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFE----GIKIADSHSLWLKERLCIS 115 F F +G + ++ +L L + + + Sbjct: 94 DFLAFTGEMSLEGFFRRNSGILNLDKEGQNLAEYLLDGAAKELHEKKPGFRHITMSKLSQ 153 Query: 116 LLAMFKKRESVNSFIL-------TNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 L + ++ S S + + ++ I + ++ L+ IA Y ++ Sbjct: 154 LFILAQRHMSGPSSLSADLPLSTQPKHRKVDEVASYIIDHYDKALSLEIIAAHFYVNKCY 213 Query: 169 IKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + + ++ G + E + R+R A++L+++ S SI V++ GY + +YF F Y Sbjct: 214 LSRIFKEASGFTVNEYINMIRIRRARELLSNTSMSITEVSESVGYETITYFERVFHQYTQ 273 Query: 228 VTPSHYFEKII 238 +PS Y ++ Sbjct: 274 TSPSGYRKQYT 284 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 10/243 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + S ++ I+ + + S FIV+ + I Sbjct: 38 DELEIIYIRNGSINITIDNELFTGTGGSFFIVNPGELHYMGSNDLNADYYTILFPLEFIS 97 Query: 62 FIDVNNELPGKFTLDKNGYIAEEE---------PPLSLVFSLFEGIKIADSHSLWLKERL 112 F + F ++ ++ +SL+ L K + L Sbjct: 98 FQSNDYVENMLFKPMRSSHVILTHSLPYSEIYAEIISLLEKLIYINKYEKGFYQLDCKIL 157 Query: 113 CISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 + +L+ + +N + +I ++ N + L D+A+ + SE I + Sbjct: 158 LLEILSNILSIPDILVKKTSNASDMRREIITYVNDNYLEKITLSDLADEFHMSEKYISRY 217 Query: 173 LRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + +F++ + R+ YAK L+ + + SI VA G+ + SYFI +FK+ YG TP Sbjct: 218 FKKHFNITFSKYVNHMRLLYAKNLLDTTNISITDVALSSGFPNVSYFIRSFKESYGKTPF 277 Query: 232 HYF 234 Y Sbjct: 278 SYR 280 >UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D710_PAESJ Length = 289 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 11/243 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF-- 61 I V + L +V+ + F Sbjct: 41 YEFFYLYSGERKFFIRDSVYQIQSGDLILVNTNDVHRTSELSQPNHERIVLHYDLPFFDG 100 Query: 62 --------FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLC 113 + L+ + E SL+ L E H + + Sbjct: 101 LSREETELLLSPFASAHPIIKLNLQERMHLEALFESLLRELQECPPGYQLHVRNMATEIL 160 Query: 114 ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + KR+S+ S LT + I I+ + L ++A+ + S+ + + Sbjct: 161 LFTARHALKRKSLPSIELTPVQQKVTDIIRHINQHFREPLPLDELAKQFFISKGHLSRVF 220 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 ++ G F++ + TR++ A+ L+ +SI ++++CG+ + S+F FK+ G++P Sbjct: 221 KEVTGFGFSQYINVTRIKEAELLLKETDWSITQISERCGFENFSHFGKVFKELSGLSPRD 280 Query: 233 YFE 235 Y + Sbjct: 281 YRK 283 >UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SBA6_9FIRM Length = 286 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 81/233 (34%), Gaps = 3/233 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + + + R + LF + + Sbjct: 41 DHYLIHLVVSGKGIFEVGGRTWEVSEGDLFFARPSQLIRYTADEQQPWEYSWV-GFNGAC 99 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + +LP + + ++ + + + +++ + + L + + A+ + Sbjct: 100 AHKLAAQLPFTDDAPVH-HTSDPDGMRAALTNIYSSRGLQPQDEAAMVGYLYLFIAALMR 158 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSF 180 + + ++ + + I FN + D+A+ + S S + + + G S Sbjct: 159 ETSAGKPHTASSSSQYVLNAIKYIQFNYSHDISIDDVAKSVGVSRSHLYRVFMLNVGKSP 218 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + L + R+ A KL+ + + SI VA G+ YF FK GV PS Y Sbjct: 219 IDYLTEYRINEACKLLRAGNLSIAEVAVSVGFFDQFYFSRVFKRAKGVPPSKY 271 >UniRef50_UPI0001B9ED63 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ED63 Length = 287 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 88/243 (36%), Gaps = 11/243 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDIDKKTCLS 60 + I ++ S + L +++ + + +++ Sbjct: 40 YEIYYLVSGERHYFIKEKLYSIRAGDLILINKFDVHKTSGHGDPEHERIVINFSDSFLGK 99 Query: 61 FFIDVNNELPGKFTLDKNGY---IAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 + + L G F D+ + E+ + ++ + + I+ + + + L LL Sbjct: 100 GHPLLASGLLGMFNQDRPLLRLTVPEQAIIMQILNKMADEIRERSASYEHMLQVLLTELL 159 Query: 118 AMFKKRESVNSFI----LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + S + ++ + I + + L+ ++E Y S + + Sbjct: 160 IKTYRLTHSASLPANVSMNPLHQKITDVVKFIHVHYADKITLQGLSETFYISPFYLSRIF 219 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 ++ G + L TR+R A++L+T I +A+ G+ S ++F FK +T S Sbjct: 220 KEITGFTIINYLNLTRIREAQRLLTDTDLKIVDIAESIGFESLTHFDRTFKKIMNMTASQ 279 Query: 233 YFE 235 Y + Sbjct: 280 YRK 282 >UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I1I4_CLOCE Length = 285 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 12/241 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 DY + + F II+ ++ K ++ I++ ++ E + PS +++ + + Sbjct: 35 DYTEVKIVLSGYFKYIIDDKLYEVAKGNIIIINPGVQHE-KIIPSGVKVEEFNYGLTNIH 93 Query: 62 FIDV-NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 F ++ N L +L + + + + + + + + L A+ Sbjct: 94 FKELPENFLIEPSSLPVFTLPLYQPEIIKCINETINEQEKNEPYCDLFIKSSIMKLTALL 153 Query: 121 KKRESVNSFILTNIN---------TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + + N I +S N Q L IA +Y S I K Sbjct: 154 HRGMTANKERTEKTRLDIQTSEKTNIVNDILEYLSTNYMEQISLYRIAHNMYLSPVYISK 213 Query: 172 RLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 ++E G S L R+ A++L+ S + I VA+ GY YF +K YYG+ P Sbjct: 214 IFKEETGESPINHLIRIRLTKARELLMSGNMPIKTVARSVGYEDAFYFSKLYKKYYGIPP 273 Query: 231 S 231 S Sbjct: 274 S 274 >UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dictyoglomus RepID=B5YFJ6_DICT6 Length = 287 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 76/243 (31%), Gaps = 9/243 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF- 61 + ++ + V+ + I L + Sbjct: 43 EFEILYMERGIGKFYVDGYEYKLNEGEYLFVNSGSIHSGLEMIKRSIGYAIVFDLRLLYS 102 Query: 62 ----FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 + LP +E + + + E K + L + Sbjct: 103 EEPDYCKHEYFLPLINKRYHIPSNLNDEHIRNDICRIIEVFKEKSYGYELYIKSLLFDIF 162 Query: 118 AMFKKRESVNSFILTNINTFTCKIT---GIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 K + + +I I+ N + L +++ + S+ + + + Sbjct: 163 WRVFKYYAERRNQDGRLGYKIERIKDVLNYINQNYNKNLSLDELSRQVDMSKFYLCRLFK 222 Query: 175 DE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + S E + R+ A +L+ + S++ +A +CG+++ SYFI FK Y TP + Sbjct: 223 ESLRMSPVEYINKVRVDKAMELLINTDMSVSEIAFECGFDNISYFIKVFKKYMHTTPLKF 282 Query: 234 FEK 236 ++ Sbjct: 283 RKQ 285 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 1/241 (0%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M CSV+ I +SFD+ + + ++ S +V R P ++ + D + Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR 63 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + NN + Y+ SL+ L + E + + L+ F Sbjct: 64 YL-KANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAF 122 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + F+ + + K+ II ++ W LKDI+ +Y SESL+K++L++EG SF Sbjct: 123 SSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSF 182 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 ++I+ D RM+ A+ L+++ Y I+ VA+ CGY S SYF F+ Y+GV+PS Y ++ Sbjct: 183 SKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSES 242 Query: 241 T 241 Sbjct: 243 K 243 >UniRef50_C0EIE9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIE9_9CLOT Length = 361 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 91/263 (34%), Gaps = 18/263 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDI--------- 53 + + + R K +++I + + + + + +V+I Sbjct: 99 FFELFYVYSGTCHCYFDGREFRLPKGTIWIFNTQCAHNVYLPDDRTNLVNILLRKSTFSA 158 Query: 54 ----DKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSL--VFSLFEGIKIADSHSLW 107 F N + + K E +S +F + E +S Sbjct: 159 ALLGMINDNDLFLSFFLNSIYNSDSAPKQLQFTTEPGGMSEFYIFKIIEEYAGKSPYSQS 218 Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTF-TCKITGIISFNIERQWHLKDIAELIYTSE 166 + + L LLA ++ + + ++ IS N R L+ AE + + Sbjct: 219 IMKHLFCCLLAELTRQYRERADNRGRESGLHISQVISYISDNY-RIATLQSTAEHFHYNP 277 Query: 167 SLIKKR-LRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 S + K L+ +F+E L ++ A L+TS + + VA GY+ S F AFK + Sbjct: 278 SYLSKYMLKHTNQTFSEYLTRFKLEKAAHLLTSTALPLERVASLTGYSERSAFDKAFKKF 337 Query: 226 YGVTPSHYFEKIIGVTDGINKTI 248 G+TP Y + + Sbjct: 338 SGLTPRQYRSQKQAAPLVPQEAT 360 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 3/233 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + + + + ++ LF+ + Sbjct: 41 DHYLIHLVVAGKGVYQVGGVSHTLQEGDLFLAKPNQLITYAADETDPWEYYWVG--FNGA 98 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + + L + + + +++++ + L I + + K Sbjct: 99 CANKLVQQTPFSDLHPVHHCKDPQAVREALYNIYLSRGPEPQCEALMTGYLYIFMAHLMK 158 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTSF 180 + + ++ + + I FN + DIA+ + S S + + + G S Sbjct: 159 EARDAMPNVGSSSSQYVLSAIKYIQFNYSHDISVDDIAKAVGVSRSHLYRVFMANVGQSP 218 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + L + R+ A L+ +++ SI +A G+ YF FK GV PS Y Sbjct: 219 IDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYFSRVFKKVKGVPPSKY 271 >UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0Y7_RUMGN Length = 276 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 85/238 (35%), Gaps = 8/238 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + + + N+ ++ L I+ + + +SF Sbjct: 41 FTELLFVVSGEGSFSFNQEQSPLRRGDLVIIPPYTEHTERSSQNHPLEYYVLGIDGISFL 100 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 + E F ++ + L + I+ A S + + L L+ + Sbjct: 101 SQKDRECAQVFCNFEH-----DPSIHELFRQMLYEIRTAQYGSQTICQHLLEILILKIIR 155 Query: 123 RESVNSFILTNINTFTC--KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 + + + +I +I + N L + L + ++ + G S Sbjct: 156 SQQLIPVSINSIRMTKECAQIKEYLDSNYAEHITLDTLTGLTHMNKYYMVHSFTKYAGLS 215 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + L TR++ A+ L+ + +YSI+ +A G++S SYF F+ + +TP Y ++ Sbjct: 216 PIQYLNQTRLKRAQHLLKNTNYSISDIASSTGFSSQSYFTQIFRKNFNMTPVKYRQEH 273 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%) Query: 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITS 198 K I + L+++AE S K ++ G +F + + + R+ AK+ + Sbjct: 412 KAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALAE 471 Query: 199 NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 S+ + GYN +YF FK G++PS Y +K+ Sbjct: 472 TDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQA 512 >UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C3R936_9BACE Length = 286 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 83/252 (32%), Gaps = 15/252 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC------PSKLRIVDIDK 55 D + + + + F + ++ + +R + + Sbjct: 37 DAWELYYVVHGQGNRMAGDTLQPFTAGDVVLIPPSMIHRWEYNADSTDEEGHVRYLMVAF 96 Query: 56 KT-----CLSFFIDVNNELPG-KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 C+ F ++ N L G +F D + E + + S + + S Sbjct: 97 SHSLLERCIEVFPELRNRLSGVQFPTDALKFGLESSRIIRRILSEINEMDELERLSAMF- 155 Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 RL + + + +I + + L DIAE + + S Sbjct: 156 -RLLPVIFTSSDYTLAGKPMRIERDVRRMQQICAYVMKHYVHSIALDDIAEEVGMNRSAF 214 Query: 170 KKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + +G +F++ + R+ A L+ + + + G+N +F+ F + G+ Sbjct: 215 CSYFKRCKGMTFSQFVTQYRLNTACHLLKNTQRGVAEICYMVGFNDLPHFVRVFTNTMGM 274 Query: 229 TPSHYFEKIIGV 240 +P+ Y ++ V Sbjct: 275 SPTKYRKQYKNV 286 >UniRef50_C8NIW5 AraC family transcriptional regulator n=2 Tax=Granulicatella RepID=C8NIW5_9LACT Length = 282 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 86/244 (35%), Gaps = 4/244 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + I + II + K N I++ ++ P I Sbjct: 40 PFTELFYVIDGKGEFIIQHQRFPVKANDFVIINPQVEHTEVSSPDSPLEY-IVVGIQGLS 98 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 F ++ G E++ L + ++ + + L LL Sbjct: 99 FSNLTPVDQGGHPFSFFNLRDEQKDILRYLNAMVQEATNQALSYDLVCHNLLEILLIKIL 158 Query: 122 KRESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GT 178 + + + + ++ T I + L+ +A + + S I + E G Sbjct: 159 RHQHFDLEVGSHSKTTKDIAFIKHYLKTYYRESIQLEALASMTHLSRFYISHSFKKEVGM 218 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 S E L R++ +K L+ + +YSI+ VA G+ + +YF F+ G++P+ Y EK Sbjct: 219 SPMEYLMTIRIKESKILLRTTNYSISQVADIVGFTTPTYFSKQFRKITGISPTDYREKYQ 278 Query: 239 GVTD 242 + Sbjct: 279 KESQ 282 >UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G755_9FIRM Length = 302 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 11/246 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + I+ K F+VS + + Sbjct: 51 DEFEIIYVKSGLLTVSISGESYIGKAGDAFVVSPGNLHLMGSQTGTVDYFTFLFPLKYIS 110 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI------KIADSHSLWLKERLCIS 115 F + +G++ L E + + ++ S + Sbjct: 111 FRTDDMLDDKLLEPLNSGHLMINPRVKDSAKELCEQLIDIYMAENDETESKITAQIKTKI 170 Query: 116 LLAMFKKRESVNSFILTNINT----FTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 +L F F++ N + ++ I N + LK+ E + SE I + Sbjct: 171 ILLQFILEMWKKGFVIENDTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISR 230 Query: 172 RLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 ++ + ++ + R+ AK+L+ S+ A + GY + SYFI +FK YG++P Sbjct: 231 YFKEHFHITLSQYITYLRLENAKQLLQDTDLSVTETAMQSGYQNVSYFIRSFKKAYGISP 290 Query: 231 SHYFEK 236 Y Sbjct: 291 LKYRNS 296 >UniRef50_C0EGI4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGI4_9CLOT Length = 333 Score = 163 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 22/256 (8%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK------ 56 Y + + +++ + + + + +I Sbjct: 77 YFELAYVYRGECVHATKENTVRLHQGDAILMNPHVLHWMYTEHPQDVVFNIMLSKEIFQS 136 Query: 57 ----------TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSL 106 FF+D +L + + + P L+ + E D Sbjct: 137 DVFPCMTDNRLLFHFFLDYFYQLNKLDDSLTFPH-SPKHPIEPLIKLMVEEFIEDDLCYD 195 Query: 107 WLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGII---SFNIERQWHLKDIAELIY 163 + + CI L A + + +I ++ RQ L+ +AE + Sbjct: 196 SVIKAHCIQLFAYLARVYRERYASTDADVELNQTVIHLIYHMQQHL-RQLSLESLAEAFH 254 Query: 164 TSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 S S + + R G S+TE+L R++ AK L+ + S + +A G N TSY F Sbjct: 255 YSPSHVSRLFRTRLGKSYTEVLNSLRIQTAKSLLETTSLPMGEIADSIGVNDTSYLNKIF 314 Query: 223 KDYYGVTPSHYFEKII 238 K YG+TP Y ++ Sbjct: 315 KKKYGLTPLQYRKQFQ 330 >UniRef50_C0EDY4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDY4_9CLOT Length = 345 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 91/253 (35%), Gaps = 18/253 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK----- 56 D+ +F II + I ++SL ++S + + S+ + +I K Sbjct: 86 DFFEMSYVYKGTFHNIIGGQQIDQPEDSLVLLSPQAKHRCFTRSSEDLVFNILIKRELIE 145 Query: 57 --------TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWL 108 S + L + + + L+ S+ E + Sbjct: 146 KIFVQMLSESESVCRFFLDSLYNVRQKQPYLFFSCDNALTELIHSIIEEYFQQQDFYQSI 205 Query: 109 KERLCISLLAMFKKRESVNSFILTNINT---FTCKITGIISFNIERQWHLKDIAELIYTS 165 + I L + + N+ + +I I + L IAE + Sbjct: 206 IQAKLIELFSKLSRLHQKNAEETPAETSNFQLILQIEDYIERHYST-VTLSSIAEHFNYT 264 Query: 166 ESLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 S + + + + F+ +++D R+++A + + +S I+ V + GYN S+F FK Sbjct: 265 PSYLSRLIQKQFNQKFSCLVQDIRLKHACRYLAHSSLPIDQVVEIVGYNDVSHFYRVFKQ 324 Query: 225 YYGVTPSHYFEKI 237 + V+P+ Y + Sbjct: 325 KHNVSPNQYRKSH 337 >UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXD1_9BACE Length = 293 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 6/237 (2%) Query: 6 SVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDK--KTCLSFFI 63 + I + + KKN FI+ S + F Sbjct: 60 LIYCHEGEGWYNIGKGKCTVKKNDFFIIEAGTPHVYAASTSHPWSIYWIHFTGEQSHLFS 119 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 ++ N + + ++ +L G I + + L LL F+ Sbjct: 120 ELFNRTIYIDDSPTARFNDRIQLFNEILVNLEMGYSIENLEYITLC---LWYLLGSFRYI 176 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTSFTE 182 K+ + N+++Q L+D+AE + S + + + G S Sbjct: 177 PQFREINKPKTQDTIQKVINYMKANLDKQLTLEDMAESVNYSPTYLSTLFTQKSGMSPIN 236 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 +++ A +L+ +A + ++ YF F Y ++P Y K G Sbjct: 237 YFNQLKIQKACQLLDFTDKKAKEIAFELAFSDPYYFSKVFTKYMHMSPKEYRMKKKG 293 >UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969E72 Length = 291 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 84/254 (33%), Gaps = 14/254 (5%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKL----RIVDIDKKTCLS 60 I S +I F + ++ +I RI +I Sbjct: 31 ELSYVIVGSGMRLIGDMTEPFLGGEVVMIPPEIPHCWYFEDDDTDEQGRIANITVTFDND 90 Query: 61 FFIDVNNELPG------KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCI 114 F + P K + ++E +++ L E +++ + +L + Sbjct: 91 FLDRCSGTFPELCGHIDKLKKKYDAVKFDKEKSEAIIDLLEEMCNQSEAERVASMIKLIL 150 Query: 115 SLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 + + + +I + N +R L D+A + + + + Sbjct: 151 IMADSGSEHVVGKYQRIDKETKRMNQIQTYVICNAKRDITLDDVARYVGMNRASFCIFFK 210 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 G +F L + R+ A +L+ +++ + G+N+ YF FK + GV+P Y Sbjct: 211 KATGKTFVTYLNEYRIGLACQLLKQKRMTVSEICYNVGFNNVPYFNRTFKRHKGVSPCEY 270 Query: 234 FEKIIGVTDGINKT 247 + G N+ Sbjct: 271 KQ---GGKADANEK 281 >UniRef50_C6LHD5 Putative transcriptional regulator YfiF n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHD5_9FIRM Length = 288 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 79/241 (32%), Gaps = 3/241 (1%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-KLRIVDIDKKTCLSF 61 Y ++ + K L + S I + + + ++ Sbjct: 47 YYEIYYLEDGERYHMMQDDMYDMKPGELILFSPYIMHRSYGENDMPFKRIVLYFESSEVA 106 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 ++ + L + + A + ++ L + + L L Sbjct: 107 SKELLDALDENNGMYRP-DAATRQKLHRMLEELIRQYENPSDFYKSYRRTLLNMFLFTML 165 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 T +I I + + L+ +A+ Y S+ + + + ++ Sbjct: 166 MHTRRREPEQMEETGRTTQIVSYIHSHYQEDITLEQLAQKFYVSQFYLCREFKRYTNSTV 225 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 + + TR+ A++ + +I ++++ G+++ ++F FK G TPS Y + + Sbjct: 226 VQYVNVTRVMNAQRKLMETDKTITEISRETGFSNLTHFNRVFKSVTGTTPSGYRKHHQNM 285 Query: 241 T 241 Sbjct: 286 Q 286 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 14/247 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVD-------ID 54 D V +V S + ++ S + V + +++ + + Sbjct: 47 DEVEIIVIKKGSGIVSVDLTTYSVSAGDIIFVLPGQLHAISQKDNEIMEYENILFKSSLL 106 Query: 55 KKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKI-----ADSHSLWLK 109 K + D + +L+ I + P V + I ++ L +K Sbjct: 107 KSSGYDLCNDKFIQPLFSGSLNICPVINNQTPYYPPVITAINEIDHLCDLRPYAYQLSIK 166 Query: 110 ERLCISLLAMFKKR-ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 L L + ++ I I I+ N + ++DIA + S+S Sbjct: 167 AHLFQILYTLVSNCGQNKIKPINQKSLKKIKTILSYIANNFQENIAIEDIANYCFYSKSY 226 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 K ++ G SF + L D R+ A +L+T+ + +I +A G+N+ SYF FK YG Sbjct: 227 FMKFFKETMGVSFIQYLNDYRLEIAAELLTTTTDNILDIAFATGFNNISYFNRCFKKKYG 286 Query: 228 VTPSHYF 234 V+P Y Sbjct: 287 VSPRKYR 293 >UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ70_CALS8 Length = 286 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 85/246 (34%), Gaps = 9/246 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI-VDIDKKTCLS 60 D V + ++ + V+ + + S Sbjct: 40 DEFEIVYLEKGTASFRVDGKEYFLGPKQFLFVNCGSIHGGKAEDNPEPYAIVFSLSMLFS 99 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI----KIADSHSLWLKERLCISL 116 D+ + ++ + + I + + L +K L + Sbjct: 100 EGPDICKSKYLQSVSERKLLVQNSFEDEHTRELISNIITVWKEKPKGYELLVKGYLFVIF 159 Query: 117 LAMFKKRESVNSFILTNINTFTCKIT---GIISFNIERQWHLKDIAELIYTSESLIKKRL 173 +F KR S ++ KI I+ N + +A+L S+ + Sbjct: 160 YYLFNKRYVTASSTDRELDLKLEKIKSALDFINSNYSSDIDIDLLAKLANLSKFYFCRLF 219 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 ++ + + + R+ A +LI + + SI+ +A + G+N+ SYFI FK+Y GVTP Sbjct: 220 KEITHLTPVDYINKFRVEKAIELIKNTNLSISEIAFEVGFNNVSYFIKVFKEYVGVTPFK 279 Query: 233 YFEKII 238 Y + ++ Sbjct: 280 YKKNVL 285 >UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus RepID=C6JCU7_9FIRM Length = 282 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 9/243 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF- 61 + + S + ++ + + KN + V I + + D T L Sbjct: 40 EYEIIRILEGSLTVTLDEKSFTAVKNDVIFVHSGILHSGIPHDCVYQCIVFDMNTFLKNN 99 Query: 62 --FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + ++ + T+ + E L+ + LF+ + D+ + Sbjct: 100 PVCGEYIQKILHQETMLFPHFSDEHPQILNCISVLFDAMYEKDTGYELTVFGQFYHFFGL 159 Query: 120 FKKRESVNSFILTNINTF-----TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 + ++ I N L++++ + S + Sbjct: 160 IFSNHYFIENPTRTRRDYKRILQLKQVLEFIEKNYANPITLQELSASVSMSPKYFCRFFS 219 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + + + L R+ A + + SI +A + G+N SYFI FK Y G+TP Y Sbjct: 220 EMTHQTPVDYLNRQRIEEACLQLAATDDSITEIAYRNGFNDLSYFIRTFKKYKGMTPGKY 279 Query: 234 FEK 236 + Sbjct: 280 KRR 282 >UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQG3_DESHD Length = 273 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 7/231 (3%) Query: 6 SVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDV 65 V+ S + + + + +R V + + D Sbjct: 45 LVIPFSGSACFTFDGKPYVIEPGMVVHAGPGMRLSKEVIGDREWEYAVIHYHIPQHERDE 104 Query: 66 NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRES 125 F+L LV + + I + + + + L +SLL + Sbjct: 105 YPLFHKDFSLAHGR----SAKVPHLVRQILDIQSIPGAAAKFQTKVLFLSLLQEIFT--A 158 Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEIL 184 + + G I N + ++ +A+ + G S L Sbjct: 159 ACGQPGQENSKLIEEAMGYIRLNYADELTVQKVADEFSVERRQFSYLFKRHTGMSPIHYL 218 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R+ AK+L+ S S+ VA+ GY + YF AFK Y GV+PS Y E Sbjct: 219 IECRISKAKELLGSPGCSVKQVAEWVGYTDSLYFSKAFKKYTGVSPSEYRE 269 >UniRef50_A6CWX4 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CWX4_9VIBR Length = 316 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 93/251 (37%), Gaps = 8/251 (3%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFID 64 + + SF + ++ ++ + ++ L + R++ + + F Sbjct: 51 EFICILKGSFAIGVDGNSKTYHSGGMVFLAPNKIHSLQSKTANSRLLTV--QFSPLLFQQ 108 Query: 65 VNNELPGKFTLDKNGYIAEEE-----PPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + ++ + + + +E++ L L + + L RL ++ + Sbjct: 109 LTGDVSFNYGVKSFEHQSEKDRSVWDAMLDLASEYVTDLDTISFSHMSLIYRLLANIERV 168 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GT 178 + + + N + I + L DIAE S + + + G Sbjct: 169 SEVINLTQNSVRDNDDELIKTCLTYIDSHYMEPLTLTDIAERSGLSYHYVSRMFKRVCGF 228 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 +F + L R+ A L+ ++ I +A KCG++ I AF+ YY TP+ + +K Sbjct: 229 NFKDYLTFIRVSKALPLLCDTTFPITDIAHKCGFSEHKLLIAAFRKYYDQTPTAFRKKYN 288 Query: 239 GVTDGINKTID 249 G + + +D Sbjct: 289 GGYNDTSSNLD 299 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 10/244 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDIDKKTC 58 D + + + + I + L I+ R + V + + ++ K Sbjct: 32 DSYELIFVKKGNIEFWVEDEKIELRAGDLLIIKPHTRHKFEVVGNFKAEFIVMGFYLKPE 91 Query: 59 ----LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCI 114 + ++ L + Y ++ F L ++ A + L + Sbjct: 92 SKSKIEALKEIYGFLESLENISSPFYFIHIRKRSNVFFCLESILQEAKENKKGLLLYIKS 151 Query: 115 SLLAMFKKRESVNSFILT--NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 L ++ RE N I + + I I N + DIA+ ++ SES I + Sbjct: 152 IELFIYITREMNNLEIKKGFDYSKIAKFIKDYIDQNYMEDIKIGDIAKKLFMSESSISRL 211 Query: 173 LR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G E L R+ AK+ ++ ++ I+ +A CG++S F FK Y G +P+ Sbjct: 212 FKSQFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFKKYTGCSPT 271 Query: 232 HYFE 235 HY + Sbjct: 272 HYRK 275 >UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFZ3_9CLOT Length = 296 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 93/254 (36%), Gaps = 18/254 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS- 60 D+ V+ + + I+N KK +F+ + + P +I++I K Sbjct: 35 DFFELVIVLNGTATHIVNSEEFFIKKGDVFVFNMDLSHGYK-DPHNFKIINIMYKPERLD 93 Query: 61 ---------------FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 F ++ F+ + I+ E L + E K D Sbjct: 94 EICNDIKKSPGYQALFVLEPFFRKKYSFSNTLSLSISSLEYVAELGARINEEYKRKDQGY 153 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + + ++ ++ + + +L + K + N L+ +A+ + S Sbjct: 154 QTMIYARFMEMVVYLSRQYIIENKLLHDTFVHLAKAILFLEDNYLNPIKLEKLADEAHMS 213 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + ++ GT+ + R+ +A L+ +++ I +A + G++ ++YF FK Sbjct: 214 VRHFNRIFKENYGTTPFNCILHLRVNHACSLLKNSNLCIADIALESGFSDSNYFSRQFKK 273 Query: 225 YYGVTPSHYFEKII 238 G+TP Y + Sbjct: 274 ITGITPKEYRARYK 287 >UniRef50_C0EGR3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGR3_9CLOT Length = 345 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 90/254 (35%), Gaps = 22/254 (8%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDK------ 55 DY + S I K + +++ I ++ + I +I Sbjct: 89 DYFEIIYVHSGSCFNRFQGETIKLCKGDILLLNPTILHQIYALHEEDHIFNIMLSKSLFE 148 Query: 56 ----------KTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 K +FF++ ++ ++ + SL Sbjct: 149 GSMWQLLSGNKIINNFFVNYFYQMNKTKDYVHFR-CSQNHLIEETITSLIAEYLGKKPAY 207 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTC---KITGIISFNIERQWHLKDIAELI 162 + + I L A + S FI I I+ N + L +I + Sbjct: 208 YQVIQSYLIILFAYLSRIYSEQHFIEQQDLEKIGILPDIISFIAQNY-QSVTLTEIQNVF 266 Query: 163 YTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICA 221 S + ++ G +F+EI+ D ++ +AK+L+ S + +I +A+K G+N + Y Sbjct: 267 NYSSGYTSRLIKHHTGKTFSEIVHDFKLNHAKELLVSTNLNITDIAEKIGFNDSHYLNKV 326 Query: 222 FKDYYGVTPSHYFE 235 FK +G+TP+ Y Sbjct: 327 FKKRFGITPTQYRR 340 >UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SQN1_9FIRM Length = 294 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 16/252 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 ++ + ++ ++ ++ + I+ + + + F Sbjct: 43 FMEIIYIKKGKGNVTVDFTTHYVEEGDIIIILPGHIHGISQHEGYSMEYENILFSVDMFR 102 Query: 63 IDVNNELPGKFTLDKNGYIAEEE----------PPLSLVFSLFEGI--KIADSHSLWLKE 110 ++ L +F L + + P LS + + + + + L LK Sbjct: 103 SKNHDSLDSEFFLPLLAGDVDIKSIYDKDDPLYPQLSSCLNRVDKLCSETPKGYHLALKG 162 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCK---ITGIISFNIERQWHLKDIAELIYTSES 167 +F + N + + I I N + + DIA SES Sbjct: 163 CYFEFFYVLFTNSTVRDEADRKNRSRDLERTKLILSYIDENYKEAISITDIASYCGFSES 222 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + ++ G SF L D R+ A +L+++N S+ VA+ CG+ + SYF FK Y Sbjct: 223 HFMRFFKNTMGVSFVSYLNDFRLNVAARLLSTNDDSVLSVAENCGFFNLSYFNRMFKKKY 282 Query: 227 GVTPSHYFEKII 238 GVTPS Y E Sbjct: 283 GVTPSRYRETHN 294 >UniRef50_A8RPA3 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8RPA3_9CLOT Length = 339 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 80/246 (32%), Gaps = 13/246 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + + ++ + +V + C S+ + Sbjct: 89 MEIIAVKKGRGVVTVDMEPYEARAGEAVVVFPGQLHGISQCGSEAMEYENIIFLPSMLMS 148 Query: 64 DVNNELPGKFTLD-------KNGYIAEEEPPLSLVFS---LFEGIKIADSHSLWL--KER 111 ++ F K +I P + + + +++ + K Sbjct: 149 AESDLCTYDFLRPMTEGGIGKPLHITGGLPDYGAFMECIGILDQLCGKKNYAYQMGVKGT 208 Query: 112 LCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 L L + + ++ + + + ++D AEL + S S K Sbjct: 209 LFWFLGLIAGIWGPEAAGQPRKSRERMKRLLEYMEEHYGEKITVEDGAELCFYSNSHFMK 268 Query: 172 RLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + G F + L + R+ A ++ + + VAQ+CG+++ SYF F+ YG TP Sbjct: 269 YFKQYMGVPFIQYLNEFRLEKAAGMLLTTPDPVTAVAQRCGFDNISYFNRLFRRKYGKTP 328 Query: 231 SHYFEK 236 Y + Sbjct: 329 GEYRKN 334 >UniRef50_C7GFI0 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C7GFI0_9FIRM Length = 291 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV-CPSKLRIVDIDKKTCLSF 61 + I I +S + L I++ I + + + + Sbjct: 41 FSELFYVISGKGVFYIENDTVSVCADDLIIINPHIEHTEKTMSNDPMTYIVFGVEGLAFY 100 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 F N P ++ G S + + + + L LL Sbjct: 101 FNSQNAANPKGYSYYNYGSAKTHFINFSQI--MIKEFNARKPGFEAICHGLLQVLLVYIT 158 Query: 122 KRESVN--SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GT 178 + + ++ S I+ I N + L +AE+ + ++ + + GT Sbjct: 159 REQHLSVISDTTLQISKECFVAKKYIDANYAKNITLDLLAEITHINKFYLSHSFTEYVGT 218 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 S L +TR+ +K+L+ S+S SI VA G++S SYF F+ G++P Y + Sbjct: 219 SPINYLMETRLAASKELLLSSSRSIAEVASSTGFSSQSYFSQIFRKNTGMSPLQYRK 275 >UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VID9_9CLOT Length = 289 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 11/246 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + I+ K F+VS + + Sbjct: 38 DEFEIIYVKSGFLTVNISGENYIGKPGDAFVVSPGNLHFMGSKTGTVDYFTFLFPLKYIS 97 Query: 62 FIDVN----NELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI------KIADSHSLWLKER 111 F + L + + ++ L L E + + + + Sbjct: 98 FYTDDILDDRLLEPLDSGRLMISPSVKDTIKELCEQLIEIYEAKKSERELNITTQIKTKI 157 Query: 112 LCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + + + ++ + + N ++ I N + LK+ E + SE I + Sbjct: 158 ILLQFILEMWEKGFIVENNTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISR 217 Query: 172 RLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 ++ + ++ + R+ YAK+L+ S+ A + GY + SYFI +FK YGV+P Sbjct: 218 YFKEHFHITLSQYVAYLRLEYAKQLLQDTDISVTEAAMRSGYQNISYFIRSFKKTYGVSP 277 Query: 231 SHYFEK 236 Y +K Sbjct: 278 LKYRKK 283 >UniRef50_C0ECN2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECN2_9CLOT Length = 334 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 90/258 (34%), Gaps = 19/258 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC--- 58 DY + F + + K+ + +++ I V + +I Sbjct: 78 DYFEMIYVYRGGFVNVFPDHTVRMKQGDIMLLNPNILHAPYVERDDDIVFNIFISNPMIR 137 Query: 59 ---------LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVF--SLFEGIKIADSHSLW 107 S I E + DK + P S++ + E Sbjct: 138 EKIIPLQKDNSLLISFFMEYLYFDSQDKKYLNFTDNSPDSILLTEKMIEEYIEQRPFYQN 197 Query: 108 LKERLCISLLAMFKKRESVNS---FILTNINTFTCKITGIISFNIERQWHLKDIAELIYT 164 + + + L + + N + N +T + I I N R L +A+ Sbjct: 198 MTDAYLVLLFSQLSRDYYKNHSIDVLPKNHHTLSYDIINYIGQNC-RSITLDSLAKHFQY 256 Query: 165 SESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 + + + + +R G +F++I+ +++ A ITS I + Q G+ S+FI +FK Sbjct: 257 TPNYLSRLIRQSTGKTFSQIVSQQKLQRAAGFITSTDMPIVDIGQIVGFYDVSHFIRSFK 316 Query: 224 DYYGVTPSHYFEKIIGVT 241 Y +TP+ Y + + Sbjct: 317 KEYHLTPAEYRKTFSSLQ 334 >UniRef50_A7B0D2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0D2_RUMGN Length = 270 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 80/238 (33%), Gaps = 3/238 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + +I + N + I + + Sbjct: 34 DFFELYYLLEGERMHMIEGEIYHLTANDFVLFPPHIMHHSYGEKDMPFKRIVLYFSPDLI 93 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 D +L + L LSL+ SL I + + LL Sbjct: 94 ANDTICQLLSEKELLFVNEGYIPNQILSLLLSLTHEIDVPGKYHDAYICNQLNGLLLNML 153 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 + + + + T + K I + + +AE++Y S + ++ G + Sbjct: 154 RLD--FEAVKSIPKTRSAKAVDYIHNHYMEDISVNQLAEILYVSPYHLCHEFKNATGKTI 211 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + L TR+ +A++L+ Y+I ++++ G+++ ++F FK GV P + Sbjct: 212 IQYLNTTRILHAQRLMLETDYNITQISREVGFSNLTHFNRTFKKITGVAPREKKKLYQ 269 >UniRef50_Q0SZ95 HTH-type transcriptional activator rhaS n=93 Tax=Enterobacteriaceae RepID=RHAS_SHIF8 Length = 278 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 87/239 (36%), Gaps = 6/239 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC--L 59 D+ V+ + + N + + ++ V D R L + ++ ++ Sbjct: 34 DFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRDHDRHLYE-HTDNLCLTNVLYRSPDRF 92 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW--LKERLCISLL 117 F +N LP + + L V L ++ + + R + + Sbjct: 93 QFLAGLNQLLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQ 152 Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-E 176 + R+S L N + + + + + + +A+ S + ++L+ Sbjct: 153 LLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQT 212 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G + L R+ A+ L+ + S+ +A +CG++ +++F F+ + +P + Sbjct: 213 GLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271 >UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFA6_VIBFU Length = 268 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 92/237 (38%), Gaps = 6/237 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ ++ + I+N I+ +N + +S K R L + +I + Sbjct: 34 DFHELMIVTKGAGQHILNDVPINLAQNYICYISPKDRHLFEQS-DNLHLTNILFQKNKLA 92 Query: 62 FIDVNNELPGKFTLDKNGYIAEEE---PPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 + + + K + + + E +L+ + + S + E L L+ Sbjct: 93 YSPLLKSVLPKESDAQQSWYISTETMKKVCTLMAQIEHESSLHSVESRLMTEALFQQLVV 152 Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EG 177 + + + N+ KI I N ++++ DI++ S + +R++ Sbjct: 153 EISRGRLTSQSNNASDNSIL-KIIDWIQNNYAEEFNVGDISDQFEISSRTLSRRIKQVTN 211 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 SF + R+ +A L+ + S+ +A + GY ++YF FK + TP+ + Sbjct: 212 LSFNNYVHRVRINHAMNLLHYSDLSVTDIAFQVGYKDSNYFSTKFKRFTNKTPTEFR 268 >UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D477_PAESJ Length = 305 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 18/251 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 Y+ V + + V K SL+I+ + R++ + + Sbjct: 46 AYLEIVYVMSGEGYHYVADEVNKTSKGSLYIIPIGTSHIFRPNGTANRLLVYNLCIRPDW 105 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSL--------FEGIKIADSHSLWLKE--- 110 ++ L ++ + P L FE + + W E Sbjct: 106 IGELGVWLSQYCRDTDVLHVLDGNPGTYLFLRDTPLELAPSFEQLHREFTEESWGFETTV 165 Query: 111 -----RLCISLLAMFKKRESV-NSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYT 164 +L + K ++S + + ++ I I+ +I ++ +A+ Sbjct: 166 LAGLLQLLTRISRKLKTQDSTGDQTTGSTRHSEFVSIVEHINRHIAEPLKMEQLADQAGI 225 Query: 165 SESLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 S+ + + G F+E +++ R+ A +L+T S S+ +A+K GY ++F F+ Sbjct: 226 SQRHFIRLFRQQTGMGFSEYVQNKRVELACQLLTGTSQSVADIAKKVGYQDPAHFREVFR 285 Query: 224 DYYGVTPSHYF 234 G+TPS Y Sbjct: 286 KVMGITPSQYR 296 >UniRef50_C5RJE9 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJE9_CLOCL Length = 285 Score = 159 bits (404), Expect = 6e-38, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 82/250 (32%), Gaps = 18/250 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ V+ + + I++ + KK +F+++ RI +I ++ Sbjct: 35 DFSELVIVMNGTATHIVDNEKFNIKKGDVFVINSNTCHGYE-NAKDFRICNIMYRSENLL 93 Query: 62 FIDVNNELP----------------GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 D + + F + + E L+ SL Sbjct: 94 LADYDIKKNAGFHALFVIEPYFTKEHSFKSNLTLKPLDFEKIHILLDSLLSEYMTKTDGW 153 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + L + L+ + + K I + + +A++ + S Sbjct: 154 KTSTKALFMLLVVTLARLYDFGNSSEKVDVINIAKSISYIENHYTEDISIDLLAKISHYS 213 Query: 166 ESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + + T+ + R+R A L+ + I+ +A +CG++ ++YF FK Sbjct: 214 PRHFARIFSETYSTTPLNYIISLRIRRACSLLKETTLPISTIAIQCGFSDSNYFSRIFKK 273 Query: 225 YYGVTPSHYF 234 +TP Y Sbjct: 274 NLYLTPKQYR 283 >UniRef50_C3RLG7 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RLG7_9MOLU Length = 280 Score = 159 bits (402), Expect = 9e-38, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 7/239 (2%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + I + ++N I++ V + + I F Sbjct: 42 FTELFYVTKGCGGFKIGADEFNVQENDFVIINPNTMHT-EVSRDRNPLEYIVIAIDGISF 100 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 + L Y + L + + + + + + ++L LL + Sbjct: 101 EIPEDSLKD---YISCNYANYKNEILFYLNLMVKESQAKNELYDDMCQQLMQVLLINILR 157 Query: 123 --RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 R +V+ I I I N ++ L +AE + ++ + +++ G S Sbjct: 158 LNRINVSLTQGKTIRKEIFMIKNYIDRNYHKEITLDTLAEKTHMNKFYLAHEFKNDVGVS 217 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 L R+ +K L+ SI+ ++ G++S SYF AFK +P Y + Sbjct: 218 PISYLLQRRIYESKYLLRDTDLSISQISTILGFSSLSYFAQAFKKSTNFSPLQYRKNHQ 276 >UniRef50_A5ZHU6 Putative uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZHU6_9BACE Length = 284 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 80/250 (32%), Gaps = 15/250 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS--------KLRIVDI 53 D + + + F + ++ + P + +V Sbjct: 37 DAWELYYVVHGYGKRMAGDTLQPFAAGDVALIPPSMLHHWEYSPDSADDDGYVRYLMVAF 96 Query: 54 DKKT---CLSFFIDVNNELPG-KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 C++ F ++ N L G F + + + + S + Sbjct: 97 SHSLVERCMAVFPELRNRLTGITFPTNALKFGTGSSQTIRRILSQMNDMDELGRLCEMF- 155 Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 RL ++ + + +I + + L DIA + + S Sbjct: 156 -RLLPAIFTSSDHTFAGKPMNIERDVRRMQQICVYVMTHYIHTISLDDIAAEVGMNRSAF 214 Query: 170 KKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + +G +F++ + R+ A +L+ + ++ + G+N +F+ FK+ G+ Sbjct: 215 CSYFKRCKGMTFSQYVTQYRLNTACELLKHSQKQVSEICFTVGFNDLPHFVRVFKNTLGM 274 Query: 229 TPSHYFEKII 238 +PS Y + Sbjct: 275 SPSKYRRRFQ 284 >UniRef50_B5CQG2 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQG2_9FIRM Length = 277 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 87/240 (36%), Gaps = 10/240 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + + S ++ K+ L +++ I + L+F Sbjct: 41 FTELFFVLSGSGSFLVEDETFPIAKHDLIVINPNITHTEKSSLEDPLEYIVLGVDGLNFV 100 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 ID NE + + + ++ E + + + + L L+ + Sbjct: 101 IDDANEYLLFHSDEMKDRLDF------YFRTILEETENSQKDYEKVCQNLLNILVVHLSR 154 Query: 123 RESVNSFI---LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GT 178 S + I + + I + L +AE+ ++ + G Sbjct: 155 YASSSVEIFPFHKMESRECSRAKRYIDSSFRENITLDKLAEIAQINKYYFSHTFTETYGI 214 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 S L R+ +++L+TS S+ +AQ+CG++S+SYF F+ G+TP+ Y ++ + Sbjct: 215 SPMNYLTQKRIFTSQELLTSTDMSLAQIAQQCGFSSSSYFTQCFRKSCGMTPTAYRKQFL 274 >UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D174_PAESJ Length = 281 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 10/241 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIR---RELPVCPSKLRIVDIDKKTCL 59 Y + + L + + F+ +R P +R V Sbjct: 47 YYNLHIVLGGKGYLHTDNMTYELTQGQGFLYGPGLRQTYHSDARDPWSIRWVHFYGARPE 106 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 F + P F ++ + P +L+ L E + + + LL Sbjct: 107 EFLDGKGLDEPWLF------HLPDLAPVEALMERLLELGRSYEVDDEYAAASTLYELLTR 160 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GT 178 + S + + + N + + L+ A + S ++ G Sbjct: 161 IQTTASQLNVSVHQTADKIRAAANYVRANCNQPFTLEQAAAIAGYSSHYFSRKFNQTFGK 220 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 SF++ L + R+ AK+L+ S S+ ++A + G++ TSYF F+D G+TP + E+ Sbjct: 221 SFSDFLTEARILRAKQLLASTRLSVKLIALETGFSQTSYFSKCFRDQEGMTPLQFRERHQ 280 Query: 239 G 239 Sbjct: 281 A 281 >UniRef50_Q65MB5 Probable transcriptional regulator n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65MB5_BACLD Length = 281 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 79/244 (32%), Gaps = 12/244 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + IN+ V + +K ++ I++ + I F Sbjct: 35 YELYYLLSGERTYFINQSVYTAEKGTMIIINPHDLHRTSSTEVQE-FERILINFSHDFIE 93 Query: 64 DVNNELPGKFTLD--KNGYIAEEEPPLSLVFSLFEGIKIA--------DSHSLWLKERLC 113 + + +IA + V + +K + L +L Sbjct: 94 PLLKCSHYRLLPFPENQNFIAFSLREQAAVEHMLMEMKKECKLKKEGHEDVVRALLFQLL 153 Query: 114 ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 ++ + L ++ +I I+ + + L +A Y S S + + Sbjct: 154 FTIYRSLAGGGRNQTRPLHPMDEKISEIASYINCSFQETMTLDGLAGQFYISPSYLSRVF 213 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + G E +R R+R AKK + I +A G+ S+F FK+ G+ P Sbjct: 214 KKVTGFHLQEYIRHIRIREAKKRLRDTDEKILDIAADTGFKHISHFNKVFKEIVGIPPLQ 273 Query: 233 YFEK 236 Y +K Sbjct: 274 YRKK 277 >UniRef50_UPI0001788255 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788255 Length = 292 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 75/248 (30%), Gaps = 15/248 (6%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV---DIDKKTCLSF 61 + I+ I + + ++ D S Sbjct: 45 EIFYVMEGEVLFQIDSEYIPVRAGEAIFIDGGDLHTGHAQGNEGCSFCAMVFDVGMLASS 104 Query: 62 FIDVNNE---LPGKFTLDKNGYIAEEEPPLSLVFSLFEGI----KIADSHSLWLKERLCI 114 D+ E +P + L+ + E + + +K L + Sbjct: 105 SYDLVQEGMIVPFQERRAAFPRRMTSGTDERLLEHIKEMMLLSKHKPAGYEAAIKGHLFL 164 Query: 115 SLLAMFKKRESVNSFILT----NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L N K+ I + R L ++A+LI SE Sbjct: 165 MLFQAASSGRLANRSRSEAADMTRTERLKKVILYIQSHYHRPIRLSELADLIPMSEGQFC 224 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G + + + R+R A +L+ S I+ +A G+ SYF+ F+ T Sbjct: 225 RFFKSMTGQTPVDYMNSYRVRQAAELLRSPDNKISDIALDVGFGHISYFVRVFRKIMNCT 284 Query: 230 PSHYFEKI 237 PS Y +K+ Sbjct: 285 PSEYRKKL 292 >UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA81_9PORP Length = 287 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 10/238 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDK------KT 57 + + L + ISF +N + ++ + ++ ++ + Sbjct: 48 IEINYVKKGNCILHLENESISFSENEMMVICSNVEHTFEAGSEDTTLMQLEFLPEVFSRF 107 Query: 58 CLSFFIDVNNELPGKFTLDKNGYIAEEEP--PLSLVFSLFEGIKIADSHSLWLKERLCIS 115 + + P ++N I + V + + + +L Sbjct: 108 NPDGHGQMKDLAPVTIFSEENRLIKIVNNVRIMRAVQRIVNEMNQKSKYYQYLVVMYYAE 167 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 LL + + +++ N K I N + + D+A E ++K Sbjct: 168 LLILIYRYLD-EAYLPICTNDSLKKAISYIRLNYQSDITISDVASQTGVGERYLRKLFSQ 226 Query: 176 E-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 S + L R+ A +L+ + S+ V CG+ S YF FK G++P Sbjct: 227 YLNLSPLDYLNQIRINKAIELLRNTEMSVKEVCFACGFQSPQYFSRIFKQQMGISPRE 284 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 8/235 (3%) Query: 6 SVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDV 65 + + I + L ++ + R+ V + + + DV Sbjct: 46 LYFILDGEGWVKIGDEELYPVPGQLVLMPARTRQSYSVISGRPYLKYWSHFSATVGDSDV 105 Query: 66 NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER--LCISLLAMFKKR 123 + L + Y + +F +D+ + L+E+ + L +F+ + Sbjct: 106 FSWLN-----VPHCYDLSGNAEMPALFQQLVDAHRSDTLAARLREKSVMLDILSRVFEHQ 160 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTE 182 + K+ I ++ + L+ +A ++ + K + G + + Sbjct: 161 QPQIHADKMEDMGRLHKVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFKRHFGITPQK 220 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 L RM AK ++ + S SI +A G+ S +YF F+ G +PS Y I Sbjct: 221 YLSLKRMEQAKLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPSEYRNNI 275 >UniRef50_C0EIL7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIL7_9CLOT Length = 332 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 83/258 (32%), Gaps = 21/258 (8%) Query: 3 YVCSVVFICQSF-DLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKT---- 57 Y V S +L N+ I + + +++ I +I K Sbjct: 76 YFELVYVYHGSCVNLFPNQERIVLNQGDILLLNPNALHCPYTTLEDDYIFNIVLKPKLFE 135 Query: 58 --------CLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSL---VFSLFEGIKIADSHSL 106 F + + ++ + + + ++ + + Sbjct: 136 KSMLSLLSDNPLFSNFFVNYMYRVNKARDYMLFHTNGEKRIAQTMENIITELYSKEMCYR 195 Query: 107 WLKERLCISL---LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIY 163 E I L LA K + N I + N + L+ +A+ Sbjct: 196 RAAEAELIVLFTCLARIYKEQLGLKGFDEVKNKQVTDIITYMDENFSQA-TLQSVADHFG 254 Query: 164 TSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 S + + ++ +F+EI+ ++ A + + + +A+ G+N SYF F Sbjct: 255 YSTHYLSRMIKKHTNKNFSEIIHSFKLENACTYLETTDIPMREIAELVGFNDASYFHKVF 314 Query: 223 KDYYGVTPSHYFEKIIGV 240 K YG +P+ Y ++ + Sbjct: 315 KQKYGQSPAEYRKQTEAL 332 >UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM6_9FIRM Length = 241 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 89/239 (37%), Gaps = 9/239 (3%) Query: 2 DYV-CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKKTCL 59 D++ ++ + +I+ R + +K +L I + + E S L I Sbjct: 5 DHLCELLLVSQGAGIYMIDGRRYTAQKGNLIIYNSRTVHDEFGGSGSNLVTYCIAIGGLR 64 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + ++ LP + + + V SLF+ I+ + L ++L+ Sbjct: 65 IDGLPADHLLPDGYCPVQPL-----RQHFAEVQSLFDAIEKEAKSHAEIANYLTMALITK 119 Query: 120 FKKRESVNSFILTNIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-G 177 T + I N + L DIA +T+ + + E G Sbjct: 120 LAAFLREEGLQEEQQTPTLAARARAFIDKNYKEAIRLGDIATATHTNAYYLSHLFKAEIG 179 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 S + + R+ A+ L+ + +I +A + GYN+++YF FK +TP Y K Sbjct: 180 LSPMKYVILRRIGEAQNLLINTDMTITQIAAQVGYNNSNYFQNVFKGALDMTPGEYRRK 238 >UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGK8_EUBR3 Length = 285 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 34/247 (13%), Positives = 87/247 (35%), Gaps = 11/247 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV---DIDKKTCLS 60 + ++ + + + I ++ +N + ++ ++ L + R++ + + + Sbjct: 39 MEIIMPLEGGYTVQIGDDLVHLNENDIIFIASGVKHRLIAPDTGKRLILQIEWSAVSKIK 98 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + + TL L+ + + S + + +L + Sbjct: 99 ELNSILTLIAPAITLTPETSGDIHSNIRKLLLDISNEYQTDSFLSEAVIYSKILEVLVLI 158 Query: 121 KKRESVNS----FILTNINTFTCK---ITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + + +S + + I I + L +IA++ S+ + Sbjct: 159 GRHHTASSCHFNVGRHKQQEYLERFLSICEYIDTHCTEDITLDEIAKIAGFSKYHFTRLF 218 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + +F + L R+ A L+ + S+ A + G+ + S FI FK G TP+ Sbjct: 219 KQFTNNTFYKYLNQKRIELALTLLADPNISVTETAMQSGFANPSTFIRVFKTEKGCTPTE 278 Query: 233 YFEKIIG 239 + + IG Sbjct: 279 FRKMFIG 285 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 6/167 (3%) Query: 82 AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKI 141 A+ E L + D+ + ++ER+ L+A+ + V ++ + Sbjct: 387 ADPEAVSDLALASSTEFLTLDNLAD-MRERILERLMALVAQ---VAETREQRNSSLIDRA 442 Query: 142 TGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNS 200 + I N + L+++A +Y S K + G +F + L R++ A++L+ + Sbjct: 443 SKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGLNFIDYLTKVRLKAARELLLNTK 502 Query: 201 YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKT 247 + +A + GY YF FK G TPS + + I G G + + Sbjct: 503 LPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRK-IGGAHFGKSTS 548 >UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium RepID=C4ZAF9_EUBR3 Length = 292 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 80/250 (32%), Gaps = 16/250 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + + I+ F+VS + Sbjct: 38 DELEIIYVKQGKLHVTISGENYIGSPKDAFVVSPGSLHLMGSPTGDADYYTFLFPLEYIS 97 Query: 62 FI-------DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS--------L 106 F + + L + + + E I ++ Sbjct: 98 FQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINEQISGKNAEKTDAANIEAQ 157 Query: 107 WLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 + + I + + + NT ++ I N R+ LK+ + SE Sbjct: 158 FETKITLIKFIRKMWRNGLILENGTNGTNTTEKEMITYIRQNYTREISLKEFGAQFHLSE 217 Query: 167 SLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 I + ++ + ++ + R+ +A++L+ ++ S+ VA GY + SYFI +FK Sbjct: 218 KYISRYFKEHFHITLSQYVNHLRLEHARQLLEESTASVTEVAMCSGYQNVSYFIRSFKKM 277 Query: 226 YGVTPSHYFE 235 YGV+P Y Sbjct: 278 YGVSPLKYRN 287 >UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RE27_CLOCL Length = 820 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 90/252 (35%), Gaps = 11/252 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSK--LRIVDIDKKTCL 59 D + V + + I+ V +K + I+ K ++ ++ L+I+ I+ K Sbjct: 30 DEIEIVKVLEGKIKVSISESVCFLEKGEMAIIKHKEIHQIQSLENESLLQIIQINYKFME 89 Query: 60 SFFIDVN--NELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 + F ++ + + K+ + L+ + + + + + + Sbjct: 90 THFPHLSRISFENNLLNISKDINLNVASNLKQLINEMINYLSVRNQGYEFHVISAIYKVF 149 Query: 118 AMFKKRESVNSFILTNINT------FTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + KI I N + ++ +AE+++ ++ I Sbjct: 150 GSIISNVPYTISTEDELEKNNITFNRMKKIIEYIEQNYMNEININTLAEILHLNKYYIAH 209 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + G S + + + RM A +L+ N SI + CG+ + YF F++ Y +P Sbjct: 210 FFKKHTGLSLGQYITNLRMNKATELLIKNEDSITNIILSCGFKNIKYFYKVFREVYKCSP 269 Query: 231 SHYFEKIIGVTD 242 Y ++ Sbjct: 270 LEYKNNRQERSN 281 >UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptococcus RepID=B9DS09_STRU0 Length = 307 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 88/257 (34%), Gaps = 17/257 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI----------- 50 + + I+ + + + ++ + + I Sbjct: 41 PELEVTYVCEGTARYHIDYDFFNSQAGDIILIRPNGMHSIHPIAKEKHITDNFQFHLDML 100 Query: 51 -VDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 + + + L + + N + KF ++ + + +F +F K H L Sbjct: 101 GLSVVDQVSLHYLQPLQNSV-NKFVHCIKPHMPGYDDIKACLFDIFSLAKEESRHFEILL 159 Query: 110 ERLCISLLAMFKKRESVNSFILT---NINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 + + + V N ++ I+ + + +++ I S+ Sbjct: 160 KSKLHEFIYLLYFHRYVVKKNTDDTYRKNEKIRQLIDYINNHYSDNLTIDFLSQFIGYSK 219 Query: 167 SLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + + GTS TE + R+ A +L+ ++ I +A + G+N+ S F FK Y Sbjct: 220 THFMTVFKQHTGTSCTEFVIQVRLSKACELLIHSTRPILEIANEIGFNNLSNFNRQFKRY 279 Query: 226 YGVTPSHYFEKIIGVTD 242 Y +TPS Y +K + Sbjct: 280 YNLTPSQYRKKYTKPKE 296 >UniRef50_A9KTC0 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=A9KTC0_CLOPH Length = 298 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 89/249 (35%), Gaps = 14/249 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP---VCPSKLRIVDIDKKTC 58 D + I + KK SL V+ + ++++ ++ Sbjct: 33 DEYEVYYLLEGERYYFIEHQTYLVKKGSLVFVNRGQIHKTGLAGTSYHDRILIELKEEPF 92 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW-----LKERLC 113 SFF + F G + EE + L I + + +L Sbjct: 93 ASFFSFFGDLSLKDFFSKHYGVLELEEKDQRRIERLLTSISTEIQNKSIGFEISVMMKLA 152 Query: 114 ISLLAMFKKRESVNSFILTN-----INTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 L+ + + N+FI + ++ I N L +++ + S+ Sbjct: 153 KLLIFSMRCKADTNTFIPATTATTAKHRKVDEVASYIVNNCTNPISLDALSKHFFVSKCY 212 Query: 169 IKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + + ++ G + E + R++ A+ L+ + +I+ ++ + G+ S +YF FK Y Sbjct: 213 LSRIFKEVTGFTVNEYINIHRVQKAQYLLLYSESNISEISAQLGFESITYFERVFKKYTE 272 Query: 228 VTPSHYFEK 236 +P Y ++ Sbjct: 273 SSPLKYRKQ 281 >UniRef50_C9LCE8 Transcriptional regulator, AraC family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LCE8_RUMHA Length = 287 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 84/248 (33%), Gaps = 14/248 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D++ V + I+ + ++ +++ SK + + Sbjct: 36 DFIEFAVIMGGKGKFYIDGKDYEVEEGDFILLNPGTYHRSKAGYSKEGLKECYIAFSGVS 95 Query: 62 FIDVNNELPGKF---TLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 F + F ++ + + + + + ++ + I +L Sbjct: 96 FKGCKSGYFPSFKGNGKIIKMADRMKKNIFQICTVMNKEARECSAGRYFMLKAYLIQILC 155 Query: 119 MFKKRESVNS---------FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 + + + F T +I + N + L+ IA +Y S I Sbjct: 156 LVVREQKEEKQEGEGKGYIFQSTGKKYVVQQIMKYMEENYREKISLEQIAANMYLSSFYI 215 Query: 170 KKRLR-DEGTSFTEILRDTRMRYAKKLIT-SNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 K + + G + L RM AK+++ S I VA GY+ +F FK +YG Sbjct: 216 AKIFKSETGDTPINYLIRLRMEKAKEILEISPEEPIKEVAAAVGYSDAYHFSKLFKKHYG 275 Query: 228 VTPSHYFE 235 ++P +Y + Sbjct: 276 ISPLYYKK 283 >UniRef50_C0EAY1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAY1_9CLOT Length = 329 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 87/256 (33%), Gaps = 19/256 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDK-KTCLS 60 D + + + + + + +++ + + K +I K Sbjct: 75 DCFEMIYVYQGELENEMPANRCTLHQGDILLLNPNVWHNVYRNDEKDIAFNIAIPKELFQ 134 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVF--------------SLFEGIKIADSHSL 106 ++ E F+ + Y+ + ++ + + Sbjct: 135 TYLSNILEDNQMFSFFFSDYLYRDPKSERYLYFQNSGDPWVREPVERMVREYFSKQPNWN 194 Query: 107 WLKERLCISLLAMFKKRESVNSFI---LTNINTFTCKITGIISFNIERQWHLKDIAELIY 163 + I+L + + S I + N ++ ++ + + L +AE + Sbjct: 195 SMTLACLIALFSQLSRTHQEESKIAAYENDRNRIVYEMVAYVNAH-MQDVTLNQMAEHLK 253 Query: 164 TSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 S + K LR G +F+++L + RM A + + I+ + ++ GY + +F F+ Sbjct: 254 YSPGHLSKLLRKSGKNFSQLLLECRMNKAGYYLEHTNLPISEIIERIGYTNEFHFYKLFR 313 Query: 224 DYYGVTPSHYFEKIIG 239 + TP+ Y + + Sbjct: 314 QSFHTTPTEYRKSVRS 329 >UniRef50_C4Z7U7 LacI family transcriptional regulator n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z7U7_EUBE2 Length = 304 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 94/257 (36%), Gaps = 14/257 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLR-------------I 50 I + + + + I+ + + + + Sbjct: 37 YEIFYIIEGERQFFFDNKSYNAYAGDIAILDTNLVHTTCSISDEDKGYNRVILYIDYEKM 96 Query: 51 VDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE 110 D DKK ++ + G + L+++ IA L L + S Sbjct: 97 CDFDKKYPGLNLVNYFHNNYGIYHLNEDQRIAFLNLYRDLRHELTKKNSGYQSRVEIATI 156 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 LL++ +++ I + I+ + N ++ L I++ ++ S+ + Sbjct: 157 YWLYKLLSLKHDSTQIHAVINSPKELSASNISAYLEANYTKELALDTISDELFMSKYYMC 216 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + ++ G + TE + R++ A +++ S++ SI+ VA + G+ S SYF FK VT Sbjct: 217 RIFKEYTGFTITEYVNTLRIKKATQILESSNLSISDVAAELGFESASYFERIFKKIMTVT 276 Query: 230 PSHYFEKIIGVTDGINK 246 P Y + VT + Sbjct: 277 PLKYRKTHQSVTIEHEE 293 >UniRef50_C0EG54 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EG54_9CLOT Length = 346 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 87/261 (33%), Gaps = 22/261 (8%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK----- 56 D+ + S +++ + ++ L I++ L + + +I K Sbjct: 80 DFFELIYVYQGSVINVVDAHEVVLQQGDLCIMNASAVHTLGKLGKQDTVYNILIKPELFN 139 Query: 57 ------------TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSH 104 F + + + + + + + V L D + Sbjct: 140 QAFLGLIAENEIISSFFLNSIYQKSISRNFMTFHTQDFPSDDAETYVHRLIMENHFKDIY 199 Query: 105 SLWLKERLCISLLAMF---KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAEL 161 E + L K + + + +I IS + + +K +A+ Sbjct: 200 YNKSIEISLVGLFIELTRGYKHRQDQNSSIELGMSNVSQIIAYISDHY-KDISIKQVADH 258 Query: 162 IYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 + + L+ +F+EIL++ R AK+ + IN + GY + S+F Sbjct: 259 FSYHPNYLSSLLKKYTDKTFSEILQNIRFTAAKEYLQKLDIPINEIVYMVGYTNKSHFYR 318 Query: 221 AFKDYYGVTPSHYFEKIIGVT 241 FK G+TP+ Y ++ + Sbjct: 319 TFKQEMGITPAQYRKQAVASK 339 >UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=Enterobacteriaceae RepID=D2THV7_CITRO Length = 284 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 5/234 (2%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNN 67 + + + + + + + + + LP+ + ++ + + Sbjct: 53 IVLRGEYGNQLEKSQHRLVEGEMLFIPARAA-NLPISEKPVMLLSLVFAPAWFGLSFYDT 111 Query: 68 ELPGKF-TLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESV 126 L + + + + + + + + L +SLL + + + Sbjct: 112 RSASLLRPLRRIELPHPQRGEGEAMLTALTHLSRS-PQEQAIIQPLVLSLLHLCRSVVNT 170 Query: 127 NSFILTNINTFTC-KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEG-TSFTEIL 184 I F I + N R + +A + + + + G SF + + Sbjct: 171 PPDIRRPRAEFLYHSICNWVQDNYARPLSRESVATFFNITPNHLSRLFTRHGTMSFVDYV 230 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 R RM A+ ++ S+N VAQ+CGY + YF F+ +G+TP Y + Sbjct: 231 RWVRMAKARMILQKYHLSVNEVAQRCGYEDSDYFCRLFRRQFGLTPGEYRARFQ 284 >UniRef50_C3QPX4 Transcriptional regulator n=9 Tax=Bacteroides RepID=C3QPX4_9BACE Length = 325 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 95/257 (36%), Gaps = 22/257 (8%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCP-----------SKLRIV 51 + D ++ +IS+ K L + ++ + P S+L++ Sbjct: 68 EYEIIYVEKGEGDCLVGDSIISYSKGDLILFGSELPHSMQSPPDGGEESDNEEKSELKVR 127 Query: 52 DIDKKTCLSFFIDVNNELPGKFTLDK-----NGYIAEEEPPLSLVFSLFEGIKIADSHSL 106 ++ + F ++ + I + L + I A Sbjct: 128 GVNIQFEKDFMHYSISQYSQFIPIRNLLEDACRGIKFTITRSGKIIKLLKQIPSAKGVDQ 187 Query: 107 WLKERLCISLLAMFKKRESVNSFILTNI-----NTFTCKITGIISFNIERQWHLKDIAEL 161 + + ++A R+ + + T N K+ ++ + L +IA Sbjct: 188 IILLLSLLQMMATSNHRKYLTTSHYTPSPSIMRNERMEKVIAYLNKHYTESIGLDEIASY 247 Query: 162 IYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 + + + ++ G +F E + D R+ YA KL+ S+ +I+ ++ CG+ S +F Sbjct: 248 TAMNPTAFCRYFKENTGKTFKEYVLDMRIGYACKLLNSSMMNISQISATCGFESPVHFNR 307 Query: 221 AFKDYYGVTPSHYFEKI 237 FK G+TP+ Y E++ Sbjct: 308 IFKRVTGMTPTFYREQM 324 >UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8RTE5_9CLOT Length = 310 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 92/246 (37%), Gaps = 5/246 (2%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 V + + + D IN R + K N IV+ + CP + + SF Sbjct: 38 VELFLVLEGTLDFFINSRQYTLKPNDFVIVNPNEIHSIE-CPDPNITIVLQI-PMKSFEG 95 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 +++E F A ++ ++ +E + + + + L+ + Sbjct: 96 YMSDESRITFADKDESQKARLVALVTAMYRTYEKGEFGYRLKVKSQFMEFLYLIVTEFRI 155 Query: 124 ESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTS-F 180 E ++ + ++T + N +++ L+ +A + S + R+ + + Sbjct: 156 EQIDKVRVQQKRHLDKLSQVTQYMKENYDKELSLEMVASRFGFTPSYLSHMFREYAQTGY 215 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 L D R++YA + + ++ + +A G+ F AFK YG PS Y +++ Sbjct: 216 RTYLMDLRVKYAMRELLNSDRYVGDIALDHGFADARAFAKAFKKRYGCLPSQYRKQMNQK 275 Query: 241 TDGINK 246 + Sbjct: 276 QVNQKQ 281 >UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35ADD Length = 304 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 9/242 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV----CPSKLRIVDIDKKTCL 59 + + D IN + S+ +++ L ++ +I I Sbjct: 38 IEIDYLLDCEADFYINGKKKQVAAGSITLINSGDIHALEPREVPVDTEDKIHGISLFISY 97 Query: 60 SFFIDV---NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSL-WLKERLCIS 115 F + +++ + + +E SL+ + + L Sbjct: 98 EFLKKICPEIDQITFELEGQEERLKELKEVFNSLIRLELAPPEEYGYLKKNAMLHSLMYL 157 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 LL FK+ + +S + + N L+ +A+ S + + L+ Sbjct: 158 LLTYFKEPRNQSSVKSQKYIDRLRVVLDYVEENYREPLTLQGVADHFSVSMEYLARILKK 217 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G +F L R+ A + + YS+ +A + G++ T I F+D YG+TPS Y Sbjct: 218 YTGNTFKTHLNQVRVSKAFRDLLETDYSVLEIAMRNGFSDTRSLINVFRDTYGMTPSQYR 277 Query: 235 EK 236 +K Sbjct: 278 KK 279 >UniRef50_P77396 Uncharacterized HTH-type transcriptional regulator ypdC n=61 Tax=Enterobacteriaceae RepID=YPDC_ECOLI Length = 285 Score = 157 bits (397), Expect = 4e-37, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 83/241 (34%), Gaps = 3/241 (1%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 +D+ + + + ++ + + + + + LPV + ++ + Sbjct: 46 IDFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAA-NLPVNNKPVMLLSLVFAPTWL 104 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 ++ + + + + + L +SLL + Sbjct: 105 GLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLC 164 Query: 121 KKRESVNSFILTNINTFTC-KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEG-T 178 + ++ F I + N + + +A+ + + + K G Sbjct: 165 RSVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTM 224 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 F E +R RM A+ ++ SI+ VAQ+CG+ + YF F+ +G+TP Y + Sbjct: 225 RFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQ 284 Query: 239 G 239 G Sbjct: 285 G 285 >UniRef50_C8P2X0 Putative uncharacterized protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P2X0_ERYRH Length = 273 Score = 156 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 9/242 (3%) Query: 2 DYVCSVVFICQSFDLIINRR-VISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 + + + S + + + L I++ + + + Sbjct: 36 PFAELMYVVRGSGYFRFADNLKLPIQADDLIIINPNVLHTECSDAEGGLEYIVLGIDGVE 95 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 F+ + + + Y + L + ++ E K D S + E L L+ Sbjct: 96 FYTE----QNAHPGVSIHNYEDYKHEILFYIKAILEAGKTHDEMSELIVENLLRVLVLNT 151 Query: 121 KKRESVNSFILTN---INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DE 176 +R + + T+ N + ++ + L +A L + ++ + + Sbjct: 152 MRRTTSLLDVETSTGGDNKDCIFLEHYLNLHYRENITLDHLASLTFLNKFYLSHIFKEQT 211 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 G S + L RM AKKL+ + SI ++ G+ S SYF FK+ ++PS + K Sbjct: 212 GLSPIDYLLRKRMIEAKKLLINTDLSITQISDIVGFRSPSYFSQFFKNMECMSPSSFRNK 271 Query: 237 II 238 Sbjct: 272 HK 273 >UniRef50_A8RL67 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RL67_9CLOT Length = 272 Score = 156 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 81/238 (34%), Gaps = 3/238 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 DY II R+ I S + + + + Sbjct: 27 DYFELYYLEEGERFHIIQDRLYCIHPGEFLIFSPYVMHHSYGQENVPFKRLLVYFSKEEV 86 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 ++ K T E++ ++ L + ++ L +A+ Sbjct: 87 DSVQLLKVLEKGTGVYKPDQREKQVVHRMLDDLLKEQDDPQAYHEDYIHTLLN--MALLT 144 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 ++ + + + I N + + +A++ Y S + + + ++ Sbjct: 145 IARNIQTPVKPEKRNRITDVISYIHQNYQEDISIDQLAQMSYVSPYYLCREFKRYTNSTI 204 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + + TR+ A+++ + +I +++ G+++ ++F FK G+TPS++ + Sbjct: 205 IQYVNVTRVMNAQRMFMETNKNITEISRDTGFSNITHFNRVFKSVMGMTPSNFRKMYK 262 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 156 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 139/233 (59%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M +VCSV+ I +SFD+ ++ IS S+ ++ + + C R +DID+ T Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + ++ K+ + + PP+ LV ++F+ + +S L L +S L+MF Sbjct: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 ++ + + +I+T + K+ +ISF+I ++W+L+DIAE +YTSESLIKK+L+DE T F Sbjct: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 ++IL +RM A++L+ ++ +A+KCGY+STSYFI F+ YYGVTP + Sbjct: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 >UniRef50_C6D0B3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D0B3_PAESJ Length = 300 Score = 156 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 19/254 (7%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + + S + +S + L + + + I F I Sbjct: 45 FELLYVLDGRITAHLGGTDYSLSTGEMLFISAGVPHNLNIDSGQALFLGIHFDFFDEFDI 104 Query: 64 DVNN------------------ELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 ++ L G N + + ++ + + Sbjct: 105 VIDQDIIVKDDTVVVEDFCSEALLSGCRPFSDNPVWTPSAELVKEMETVIKEFTLTKPGF 164 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + + L IS+L ++ + LT + I + + +A+L+ Sbjct: 165 EAVCKGLMISILINLQRSRTEAGPHLTTRRERMTPVVEWIEQHYMEDCSNETLAKLLNIH 224 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 E + K+ + G S + ++ R R AK+L+ + ++ V+++ GY YF F Sbjct: 225 EDYLGKQFKSVYGMSLNKYVQSIRHREAKRLLRESDATVEQVSREVGYEDMHYFSRIFNK 284 Query: 225 YYGVTPSHYFEKII 238 + G++P Y + + Sbjct: 285 WEGLSPREYRKTVQ 298 >UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIW0_CLOPH Length = 300 Score = 156 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 88/239 (36%), Gaps = 10/239 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + S + + ++ K N L I++ I PSK + + F Sbjct: 65 FAEFFYITNGSGQFSVEKEILDVKANDLIILNPTIVHTEISNPSKPMEYIVLGIEGIKFQ 124 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 + + + A + SL +K + ++ + L + M + Sbjct: 125 AEDQGYILLNSS-------AHKSDLHLYFNSLAHEMKSEQPYRNFVCQNLLNIIFTMILR 177 Query: 123 RESVNSFILT--NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTS 179 ++ I++ + I N + ++ ++ L++ ++ + GTS Sbjct: 178 NDAFKISIVSGPKLTRECNIAKKYIEENYQENITIETLSSLVHLNKYYFVHNFKKQFGTS 237 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 L R+ + L+ S ++S++ ++Q G++S SYF AFK +TP Y + Sbjct: 238 PINYLIKRRIEESMHLLVSTNHSLSSISQIVGFSSPSYFSQAFKRMTNITPQEYKKMYK 296 >UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME6_9FIRM Length = 323 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 14/253 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR---ELPVCPSKLRIVDIDKK---- 56 I + + S+ ++ + L PS +V+ ++ Sbjct: 71 FEIYYEIAGTCRYFVEGAAYIVNAGSVVMIGENQIHKTASLGDSPSSRIVVNFSREYLEK 130 Query: 57 -----TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF-EGIKIADSHSLWLKE 110 + FF + +E + + L + L E + L Sbjct: 131 VAAAFPEVDFFSFLTDERNHLLSAITVKQQNHIQSILQQMLDLEGETSPEDQALRAMLLA 190 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L + L A+ +++ N +I I+ + + L IA Y S + Sbjct: 191 TLLLELKALCVQQQCQGGEKGRVSNHIVEQIQAYIAQHYAEKLTLTGIASQFYISPYYLS 250 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + S E + R++ A+ LI + SI+ VA + G+ +T++F FKD G++ Sbjct: 251 RLFKKSTNLSLIEYINGVRIKAAQNLIEKSGESISSVAGQTGFMTTAHFRRVFKDATGLS 310 Query: 230 PSHYFEKIIGVTD 242 P Y ++ + Sbjct: 311 PQQYRQQYKRINK 323 >UniRef50_UPI0001789626 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789626 Length = 305 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 16/249 (6%) Query: 2 DYVCSVVFICQSFDLIIN----RRVISFKKNSLFIVSDKIRRELPVC---PSKLRIVDI- 53 D + I + + + + KK ++ + L V ++ V+ Sbjct: 38 DSTEIMYMISGVCRIDVKAGDTEKSVILKKGEFMVLDAGVPHRLIVDQAASCRMLNVEFG 97 Query: 54 ---DKKTCLSFFIDVNNELPGKFTLDKN---GYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 + S V E F L + +A++E ++ SL + + Sbjct: 98 FMESEGMAPSLRHIVGEEEEVSFLLKRPFRYLVLADQEEVYPVLKSLVLELDQRGTDGRM 157 Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTF-TCKITGIISFNIERQWHLKDIAELIYTSE 166 + L I LL + + F + + N +RQ +KD+A + Sbjct: 158 MTHALFIQLLVCIARLYEERERSDMQQSDFYIKRSVDYLHQNYDRQIQVKDVAAEVNLHP 217 Query: 167 SLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + + R G + TE L RM AK L+ I+ ++ G S YF FK Y Sbjct: 218 GYLHRVFRRGTGRTITEYLTTIRMEKAKMLLEQTDIPIHEISDYVGVGSRQYFHMLFKKY 277 Query: 226 YGVTPSHYF 234 G TP Y Sbjct: 278 TGSTPVEYR 286 >UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL87_9FIRM Length = 287 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 34/247 (13%), Positives = 87/247 (35%), Gaps = 11/247 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDI--DKKTCLSF 61 ++ + + + + + I+ + EL P +RI+ + + L Sbjct: 39 FELIMPTESGYSVHCGEKEYVLDEGDIIIICPGVIHELFSPPKGVRIIFLVSLAQIDLQE 98 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 V + + + + L+ + + ++ + +L + Sbjct: 99 LDLVISMISPAILISPEKFPQIHAQIHRLMLEIRDEYFRNLPYTESSIYAKFLEILVLVG 158 Query: 122 KRESVN-----SFILTNINTFTCK---ITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + + + K I I+ + L+++A L S+ + Sbjct: 159 RCYAEIAQHNFEAKNNKQQEYMEKFLFICNYINEHYAEPLSLEEVASLAGFSKYHFTRLF 218 Query: 174 RDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + T+F + L R+ +AK L+ + S+ ++ +CG+++ S F+ F+ G TP+ Sbjct: 219 KQYADTTFYKYLNQKRIAHAKHLLVDKNLSVLDISLQCGFSNLSSFLRMFRKLTGFTPTE 278 Query: 233 YFEKIIG 239 + G Sbjct: 279 LRKMYDG 285 >UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LA91_9FIRM Length = 288 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 85/250 (34%), Gaps = 15/250 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-------------KLR 49 + + +L + R + ++ E+ Sbjct: 39 ELEWICAEHGVLNLTVRGRSFTLHPGEFCFINSGELHEIKSGGPSLHHAIVFNPDILDFT 98 Query: 50 IVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 + DI + + + N P ++ + + L+ + S S+ + Sbjct: 99 LYDICQHSFIRPVTSGNLIFPTLPSVFSPEESQMILFHMQEIIRLYHTLPSCASLSIKIH 158 Query: 110 ERLCISLLAMFKK-RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 + L E+ S + K+ I N L D+A++ + S + Sbjct: 159 ILQILELFFQADCFLENTISSKEKDSQNKLKKVIEYIHENYAGPISLPDLAKICFMSPNY 218 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + E G + + R++ A +++T + ++ VA G+++ SYFI F++Y Sbjct: 219 FCHYFKQEIGKPPIAFINEYRIQKACQILTDSELPVSQVAISVGFDNFSYFIRKFREYKN 278 Query: 228 VTPSHYFEKI 237 VTP+ Y + Sbjct: 279 VTPTEYRSHL 288 >UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM97_9FIRM Length = 283 Score = 156 bits (394), Expect = 8e-37, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 16/246 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRE-LPVCPSKLRIVDIDKKTCLS 60 D+ + I + L I+ + + + + + + Sbjct: 36 DFCVLIYVIDGCIYVTEGDTDYEVNAGELLILKNGVHHFGKKKIQKGTKWIFVHFRISAD 95 Query: 61 -----FFIDV-----NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE 110 F+ D + + + + E + D++ W Sbjct: 96 CNASPFYPDASPLGAYDATAESILTLPKFLDSVSARFEKELKTFIEYAQSDDAYKKWFIN 155 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 + LL+ +VN+ +N T + +I +S NI + ++I + Y S + Sbjct: 156 QRLFLLLSSL----AVNTQGFSNNLTLSDRICRYLSDNIGVPFSSENIEKRFYLSYKYMS 211 Query: 171 KRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + E G + + RM A +L+ S SI +A K G++ YF F++Y G + Sbjct: 212 HLFKKEKGVTMQQYHNSVRMDEACRLLCSTLMSIGEIADKLGFSDVLYFSRCFRNYTGKS 271 Query: 230 PSHYFE 235 PS Y + Sbjct: 272 PSAYRK 277 >UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K6_PAESJ Length = 277 Score = 156 bits (394), Expect = 8e-37, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 76/241 (31%), Gaps = 5/241 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + ++ +++ + ++ + I E R K Sbjct: 36 TFSELLLVEEGRGTFVVDGKPYEVGPGTVLLYHRGIWHEEWSTHYPFRATYFAFKDLQVK 95 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 N G + + SLV + + S L LLA Sbjct: 96 -GCPQNYFLGPDQAPVIELGEKTDETASLVRECLAELHSGLAESRAAANHLFGLLLARLA 154 Query: 122 KR---ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-G 177 + ES I+ K G I N ++ L+ +A++ + S+ + + E G Sbjct: 155 RLVPGESTERRIVKPAEAAVIKARGYIEENYQQPITLEQLAKVTFVSKYYLSHLFQQEVG 214 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 S + L RM AK+ + + + + GY S F FK G+TP + E Sbjct: 215 ISVIQFLIQCRMEAAKRYLIMTGRPVKEIGELVGYQSEPTFHNLFKKVTGLTPGQFRESA 274 Query: 238 I 238 Sbjct: 275 R 275 >UniRef50_A8SHV0 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SHV0_9FIRM Length = 309 Score = 156 bits (394), Expect = 8e-37, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 82/265 (30%), Gaps = 19/265 (7%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV----------D 52 + + + R + +L +V D Sbjct: 45 EYEIYLLLRGRRQMFFENRAYEAQAGNLILVDSGQIHMSHSIVGDPETEYERVILYVDRD 104 Query: 53 IDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERL 112 I +K F K + L + E + A+ S Sbjct: 105 IVEKVDKMFPELKIGAFFHKHYGIYELTPKQTANTRRLFLQIMEELDKAEPMSQTAILSE 164 Query: 113 CISLLAMFKKRESVNSFILTNIN--------TFTCKITGIISFNIERQWHLKDIAELIYT 164 I F++ + + +I+ IS + + + L +AE Y Sbjct: 165 LILGFIYFRRSNQQVACLNDVQEGKASGGKFDAVYQISDYISDHFQERLSLDSLAEQFYI 224 Query: 165 SESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 S+ + + + G E + R++ A+ L+ + + S++ +A + G+ S +Y FK Sbjct: 225 SKYYLSRSFHEVTGFGINEYINILRVKKAQSLLETTTLSVSEIASRTGFESITYLGRVFK 284 Query: 224 DYYGVTPSHYFEKIIGVTDGINKTI 248 Y VTP+ Y + + + N Sbjct: 285 KYQHVTPAQYRKSLTSTAEKNNTNT 309 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 156 bits (394), Expect = 8e-37, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 8/149 (5%) Query: 92 FSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIER 151 ++ + W E++ + ++ K E + K + N R Sbjct: 390 LDTVMALEDYEDIRTWFLEKMMQTCCSIRDKNED-------RSESLVEKARSYMQENYSR 442 Query: 152 QWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKC 210 + L D+++ + S K ++E G +FTE L + R+ AK+L+ + SI + Sbjct: 443 EISLDDVSKEVNVSPYYFSKIFKEESGENFTEYLTNIRIGKAKELLENPELSIKEIGVMS 502 Query: 211 GYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 GY +YF FK + G+TP Y E+ G Sbjct: 503 GYTDPNYFSRIFKKHTGITPREYRERYYG 531 >UniRef50_Q0ST06 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=Q0ST06_CLOPS Length = 686 Score = 156 bits (394), Expect = 8e-37, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 102/254 (40%), Gaps = 9/254 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC-PSKLRIVDIDKKTCLS 60 D + + + S + I+ +++ + IV+ + + +++ I ID Sbjct: 30 DAIEILYVLKGSIKVDIDTDSYEIQEDEIEIVNTEQTHRIYSNKDNRVLIFKIDPHFFEK 89 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF--EGIKIADSHSLWLKERLCISLLA 118 ++ D+ N T D+ E L + S+ E + D + ++++ L L Sbjct: 90 YYSDIENMFFYTNTSDEGAQSDESYDKLRVFLSIILCEEAQKVDDYDKYIEKSLVELLFH 149 Query: 119 MFKKRESVNSFILTNINTFT-----CKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + + +I+ I N + LKDIA + S + + Sbjct: 150 LLNNFHYLLYDNDEIHENNMLLERYHRISKYIYNNYNKNITLKDIANTEFLSTHYLSHEI 209 Query: 174 R-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + G SFT++L TR+ + KL+ S++ ++ + G++ T YF FK YY TP Sbjct: 210 KYATGLSFTDLLNLTRVEESVKLLLDTDKSLSEISYEIGFSHTRYFNKHFKAYYNCTPLQ 269 Query: 233 YFEKIIGVTDGINK 246 + +K + NK Sbjct: 270 FRKKHKISEEEYNK 283 >UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRN2_ALIAD Length = 274 Score = 156 bits (394), Expect = 9e-37, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 4/230 (1%) Query: 10 ICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFID--VNN 67 + + + + L + EL + P + T L F + + Sbjct: 44 LDGHAVVTTSGASMVVSAGDLLLFPAGEPYELRIEPDEGDRPGEHLSTDLYLFCNGPWVD 103 Query: 68 ELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVN 127 + ++ +A E + L L E + L + L +L F K + Sbjct: 104 KWWNHRPRKRHLRLALHENCVYLWRQLIEEYRRPGKPDEELCDYLLRALCLTFDK-YGYD 162 Query: 128 SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRD 186 T + +I I + L DIA+ + S S + ++ G + + L++ Sbjct: 163 PKRATPVPIAAERIRAYIERHAAEDLSLSDIADAVGLSVSRVVHIFKEAYGQTVVQYLQN 222 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 R++ A + ++ ++ +A +CG++S SYF F+ YG++P + ++ Sbjct: 223 VRLQMACDRMRFSNLNLEEIADRCGFHSYSYFYRVFRQKYGISPREFRQR 272 >UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C32 Length = 297 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 80/254 (31%), Gaps = 18/254 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRE-LPVCPSKLRIVDIDK----- 55 D + + FI + I + + L V+ + ++ + Sbjct: 39 DDLELIYFIRGNATFYIGSETVKPEPGDLMFVNKGMIHTGFADDEHQVEYYALVFHSVLA 98 Query: 56 -----KTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE 110 + + F + A +V + + + Sbjct: 99 ESRVAGSSHVQITNPYASGKRFFPILLPVTDAYNSLIAGIVKQMIAEYEQQAIGYQVAIQ 158 Query: 111 RLCISLLAMFKKRESVNSFILT------NINTFTCKITGIISFNIERQWHLKDIAELIYT 164 + LL + ++ + + ++ + + + ++ A ++ Sbjct: 159 SMLHLLLVHLSRHHHLHGPTGSADTVGAELTDRFKELIAFVERHYPEKLTVQQAAGIVNL 218 Query: 165 SESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 SE + + G +F E + R+ A++L+ +S I +A K G+ S +YF F+ Sbjct: 219 SEYHFCRTFKKVTGKTFVEYVNLLRINAAEQLLIHSSDPITEIAFKVGFGSVNYFSQMFR 278 Query: 224 DYYGVTPSHYFEKI 237 Y +PS ++ Sbjct: 279 QYKRHSPSQCRKRY 292 >UniRef50_C9Y4M3 HTH-type transcriptional activator rhaS n=2 Tax=Cronobacter RepID=C9Y4M3_CROTZ Length = 289 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 91/241 (37%), Gaps = 10/241 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC--L 59 D+ V+ + + N + + S+ V D R L + ++ ++ Sbjct: 45 DFWEIVIVEHGTGTHVFNGQPYTLSGGSVCFVRDHDRHLYE-HTENLCLTNVLYRSPQAF 103 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIK----IADSHSLWLKERLCIS 115 SF + LP + + + L L E ++ +D H++ E L + Sbjct: 104 SFLSGLEKLLPQEQDGHYPSHWRVSQQTLHQASPLVERLEALRECSDVHAVASMEMLFMQ 163 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 LL + + + + + ++ + + + + +A+ S + ++L+ Sbjct: 164 LLILLRSGSQMQGG--GHADERLNQLIAWLEDHYAEEVCWEQLADKHMLSLRTLHRQLKQ 221 Query: 176 -EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G + L R+ A+ L+ + S+ +A +CG+ +++F F+ + +P Sbjct: 222 RTGLTPQRYLNRLRLMKARYLLRHSEESVTDIAYQCGFGDSNHFSTLFRREFSWSPRDIR 281 Query: 235 E 235 + Sbjct: 282 Q 282 >UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=Clostridium RepID=Q0TS97_CLOP1 Length = 285 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 9/247 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC--- 58 + + F L I++ I KKN + V I + D K Sbjct: 39 TECEIIRILEGEFILFIDKEKILAKKNDIIFVHSGIFHGGLPNDCIYECIVFDMKLLLKD 98 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 + ++ + + + + + SLFE +++ + ++ + L+ Sbjct: 99 NNACTKQIYDIVNHNKVIAHKLPSNVQALNNCCTSLFEAMRVKSTGYEFIAQGALYYLIG 158 Query: 119 MFKKRESVNSFILTNINTF-----TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + + T + +I + L+D+++ S + Sbjct: 159 TILENQLYVKNNKYTKKTKERFLQLKNVITLIENEYQNPLTLEDLSKASGMSPKYFCRFF 218 Query: 174 RDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + + E L R+ + + + + SI +A CG+N SYFI FK + GVTP Sbjct: 219 HEMINKTPIEYLNYYRIEISCEKLLATELSITEIALNCGFNDVSYFIKTFKKHKGVTPKQ 278 Query: 233 YFEKIIG 239 Y + + Sbjct: 279 YLKSLKA 285 >UniRef50_C6J8U5 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8U5_9FIRM Length = 279 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 78/237 (32%), Gaps = 9/237 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + D +I ++ K+ L I++ I S Sbjct: 40 AFTELFYVRDGQGDFLIEDQIFPISKDDLVIINPHINHTEISKGSPPLSY-FTVGVDGLC 98 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 F ++ F + + L SLF+ + + + L+ + Sbjct: 99 FSFNGHKEYRIFNCREK-----KTDLLFYFNSLFQELDRQSEGYETICSHMLDILILQLR 153 Query: 122 KRESVNSFILTNINTFTC--KITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGT 178 + ++T + I + N L ++EL + ++ + + G Sbjct: 154 RITDSPFELITAQHPSKECAHIKRYLDSNYGENITLDHLSELSHLNKYYLSHEFTKYYGI 213 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 S L R+ K+L+ + Y I+ +A G++S SY +F+ G+T Y + Sbjct: 214 SPINYLNRKRIEVCKELLENTDYGISDIAHLTGFSSQSYLSQSFRKSCGMTAGTYRK 270 >UniRef50_Q5WCU1 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCU1_BACSK Length = 308 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 93/264 (35%), Gaps = 18/264 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + + ++ + +K L I++ + + + K Sbjct: 42 DAIELLYSFSGRARVFVSGQPFLMEKGDLVIINSNEVHAIWGESGEKVEYLVIKLDPEVL 101 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSL-----------VFSLFEGIKIADSHSLW-LK 109 + + K+ + + L + + + D + ++ Sbjct: 102 YSTSRSIFESKYVFPFTMSKSSPQTLLKSGEMASTVIPATIAKINDEFSHKDYGYDFAIR 161 Query: 110 ERLCISLLAMFKKRESV-----NSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYT 164 +C LA+ + I + ++ ++ + K A Sbjct: 162 IHICTIFLAVLRHWRQSGISVGTESINDSDFQLMRQVFQLLESHYATALTAKQAAATCNL 221 Query: 165 SESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 S S ++++ G SFTE+L R+ A+KL+T+ SI VA GY+STSYFI FK Sbjct: 222 SYSYFSRKIKSITGRSFTELLNYIRITEAEKLLTTTDLSITEVAVSVGYSSTSYFIQHFK 281 Query: 224 DYYGVTPSHYFEKIIGVTDGINKT 247 ++P + +++ N+T Sbjct: 282 QAKHLSPLRFKKRLQQSVFDKNET 305 >UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NUZ5_BACSE Length = 305 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 84/252 (33%), Gaps = 17/252 (6%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC------PSKLRIVDIDKKT 57 + + + F + + + + + +LR+ + Sbjct: 53 YEIIYVKKSCGRCFVGDCIECFSEGDVVLFGPSLPHYMRSDDAYHGDNPRLRVQGTIIQF 112 Query: 58 CLSFFIDVNNELPGK-----FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW----- 107 +F + P + + V + Sbjct: 113 EENFMQYSFDHYPQFHQIRVLLKEARRGVVFHTADAGAVRDMVSAFPELKGFGQITGLLD 172 Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 L + L +S+ T N KI I+ N R L +IAE+ + S Sbjct: 173 LLQALAVSVPRRMLASPCYYEKFPTAGNKRIDKIISFINSNYTRSLKLDEIAEMANMNSS 232 Query: 168 LIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + +D G +F + + D R+ YA KL+T I+ +A +CG++S +F FK Sbjct: 233 AFCRFFKDATGKTFLQYVADMRIGYACKLLTIGDMEISQIAVECGFDSIPHFNRTFKQLT 292 Query: 227 GVTPSHYFEKII 238 G+TP+ Y +I+ Sbjct: 293 GLTPTQYRNQIM 304 >UniRef50_A8S1P5 Putative uncharacterized protein n=2 Tax=Clostridium RepID=A8S1P5_9CLOT Length = 309 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 15/261 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR-------------ELPVCPSKLRI 50 I N R + L +V + + + S R+ Sbjct: 35 YEIFYIIEGERLFFFNNREYVARSGDLILVDTNLIHMTKSVTAEDTGHNRVILYVSYDRM 94 Query: 51 VDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE 110 D + + +E G + LDK +L ++ E Sbjct: 95 KAFDGQYPSLQLVRFFHEHYGVYHLDKEQQALFLNFYRNLRIAMTEKAHNYKVGIDLETL 154 Query: 111 RLCISLLAMFKKRESVNSFILTNIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 + + K+E + + I +S N E+ L+++A Y S+ + Sbjct: 155 TWLFKITSYVSKQEGASPHSSDHPKYRTAYAIADYLSENCEQNISLEELAAHFYLSKYYV 214 Query: 170 KKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + ++ G + TE R+R AK+L+ SI+ +A + GY S +YF FK + + Sbjct: 215 CRTFKEITGYTVTEYTNIHRIRKAKRLLEETDMSISEIAHELGYESLTYFERMFKSFMTI 274 Query: 229 TPSHYFEKIIGVTDGINKTID 249 +P Y + + VT +T + Sbjct: 275 SPLKYRKTLNTVTYTNEQTTE 295 >UniRef50_A6LXV6 Xylan 1,4-beta-xylosidase n=2 Tax=Clostridium RepID=A6LXV6_CLOB8 Length = 841 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 99/249 (39%), Gaps = 4/249 (1%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK---TCLS 60 + + + S + + ++ L +++ L ++ + ID +S Sbjct: 34 IELIYILTGSVRVQCRNMQYTLHEDDLILINMFDVHSLYGKKCEVLSLKIDISALDPEIS 93 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 F + DK +I + +V S + + + L L + F Sbjct: 94 RFAQNRFDCNSSIEADKKKFIRLKRLLALIVKSNVNPDENVELLNKSYIYELLYILTSTF 153 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 K +S NS + + I IS N + L +++ Y S I K +D G S Sbjct: 154 KVEDSANSTDINKNSERIKNILHYISENYRNKISLNSLSDEFYLSMPYISKIFKDFIGIS 213 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 F++ L + R+ +A K +T + +I +A+K G+++T F+ +FK Y PS Y + + Sbjct: 214 FSDYLIEIRLSHAMKDLTDPNLTIEYIAEKNGFSNTRSFVSSFKSKYFCLPSSYRKNMDA 273 Query: 240 VTDGINKTI 248 G K I Sbjct: 274 YDLGTKKKI 282 >UniRef50_A0AET6 Complete genome n=16 Tax=Listeria RepID=A0AET6_LISW6 Length = 277 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 82/249 (32%), Gaps = 19/249 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D++ + I + +K + I + ++ P + + + F Sbjct: 33 DFLEISIIYDGKVIYDIEGERVELEKGDMLIFNPGVKHYDITEPGMT-----NAQLHIGF 87 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLV---FSLFEGIKIADSHSLWLKERLCISLLA 118 K ++ ++E +++ + E + + + L+ Sbjct: 88 RNFTLEGYSRNTFPFKKAFLRKKEEDSAILSISKQIIEEKDAEKPGYDLILKAFVMQLII 147 Query: 119 MFKKRESVNSFILT---------NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 + + +I + + L +++ +Y S + I Sbjct: 148 HVLREATPEQLENNGVKLSTDEQQKQLLVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYI 207 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 K ++E G S L R+ A++L+ + + ++ A GYN YF FK YYG Sbjct: 208 SKVFKEETGESPINYLIKIRLSRAEELLKNKNITVKQAANMVGYNDAYYFSKLFKKYYGF 267 Query: 229 TPSH-YFEK 236 PS + + Sbjct: 268 PPSENWRKS 276 >UniRef50_A4BH94 Transcriptional regulator, AraC/XylS family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BH94_9GAMM Length = 305 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 74/238 (31%), Gaps = 3/238 (1%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 ++ + + + +N S + L ++ ++ + + + Sbjct: 33 TEALWVLQGAIRVQVNDHQYSLRDGDLLFINADDHHATEAASDDNLVLCLQHRFEE--LV 90 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 +V+ + K L + + +L + LL F Sbjct: 91 NVSVAPGTSNPVLKARLNDLRTTLAHLWWEQKYQPAHWQLATENGLAQLQLILLRYFSSA 150 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSFTE 182 + + + +IT + + L ++E SE+ + + G++ Sbjct: 151 SPAPAESRDDASWRIQQITRYLEAHYREPISLTSLSEHFGLSETYLSHYFKDKTGSTLVR 210 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 L R+ + ++ +A + G+ S F AFK Y TPS + ++ Sbjct: 211 WLTQLRLERCLPDLIQTDSTVAELALEHGFPSIKAFNSAFKREYQCTPSEFRQQQQSA 268 >UniRef50_B7CB27 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB27_9FIRM Length = 291 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 6/236 (2%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 Y L ++ + K++ L IV+ I + + +++F Sbjct: 54 YTEIFYVTKGHGLLSLDNKNYPVKEDDLVIVNPLISHTERGIENVNFEYIVMGIEGVTYF 113 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 +E G Y + L + ++ +K D+ L + L LL + Sbjct: 114 SKEEDEEQGCSIA---NYYEYKHEVLFYLKTILFEVKTKDTEYQSLCQNLLEVLLINLMR 170 Query: 123 RESVN--SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 R ++N S + N I I + + L ++EL + ++ I + G S Sbjct: 171 RANINLKSSPINKANKDCVLIEKYIDAHFKEDITLDTLSELTFLNKYHIVHAFKQYKGIS 230 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R+ AK L+++ + I+ +A G+ S SYF AFK +P Y + Sbjct: 231 PINYMIQKRLEEAKLLLSTTNLQISEIAYIVGFTSQSYFAQAFKKATLTSPLQYRK 286 >UniRef50_UPI0001BC838F helix-turn-helix- domain containing protein AraC type n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC838F Length = 289 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 12/243 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV---CPSKLRIVDIDKKTCLS 60 + + S II + F+ L ++ + + +++ + ++ S Sbjct: 37 YELNLVMNTSGKRIIGDSIEDFENCDLVLLGPGLPHKWKAPTLDETQVITIQFHEQMYNS 96 Query: 61 FFIDVNNELPGKFTLDKN-GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 F ++ P + L ++ I V + A + L+ + L++ Sbjct: 97 FLLNKRVFEPIRELLIRSTRGIVYTGKTFERVKERLLNLSNARGFNTALEFYSILYDLSI 156 Query: 120 FKKRESVNS-------FILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 ++ + S + + + KI I N ++ LK+IAEL+ SES I Sbjct: 157 ADEQRLLTSASYDSSLLVRESRSRRIEKICKYIEVNFKKDITLKEIAELVNMSESAISHF 216 Query: 173 LRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + SF L D R+ YA +L+ + S+ +A +CG+++ S F FK Y TP+ Sbjct: 217 FKKRTNRSFITYLTDVRIGYASRLLAETTQSVADIAFECGFSNLSNFNRIFKKYKNQTPT 276 Query: 232 HYF 234 Y Sbjct: 277 DYR 279 >UniRef50_B6FM02 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B6FM02_9CLOT Length = 294 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 13/257 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF- 61 ++ FI + L + + N L IV+ L L I + F Sbjct: 38 HLQVYYFISGTAKLECGKNNFEVQANDLVIVNPNELHYLESTSDNLVFYTIRFEPSFLFS 97 Query: 62 ----FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFS--LFEGIKIADSHSLWLK---ERL 112 + P + + + L+ + L E + L +K L Sbjct: 98 NHVDLLQTKYLTPITLNRIEFNNLIQNNTELTELVKKVLMEYFNKKIGYELAIKGYIYYL 157 Query: 113 CISLLAMFKKRESVNSFILTNINTFT--CKITGIISFNIERQWHLKDIAELIYTSESLIK 170 ++LL + S + T +I + L +A + S Sbjct: 158 VVTLLRNHVQHILTQSELDDKEATLIRFQPAFELIEKKYNEKITLSKLANTVGLSVHHFC 217 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G + T+ + + R+ + + Y+I +A CG+ + +YF FK Y+ + Sbjct: 218 RSFKQLTGKTTTDYINNIRLDKSIYYLKQTDYNITEIALMCGFENGNYFSRIFKKYHSTS 277 Query: 230 PSHYFEKIIGVTDGINK 246 PS Y + + Sbjct: 278 PSQYRNLYKNLAVTPKE 294 >UniRef50_A4CQ66 Activator protein MtlR n=10 Tax=Bacteroidetes RepID=A4CQ66_9FLAO Length = 292 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 11/250 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRE-----LPVCPSKLRIVDIDKK 56 + V + I V + + L ++ + S+ + Sbjct: 41 PEIELVYVNGGNGKRQIGSHVSYYTQGDLILIGSNLPHCGFTDACTGNTSESVVQMKTDF 100 Query: 57 TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 FF + G IA + E ++ L ++ Sbjct: 101 LGSDFFSIPEMRNIRQLFEKAKGGIAFTGSAKKKIGEKIEILEYKSDFQRLLAILNILNE 160 Query: 117 L-----AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 L E ++ + N I + N L+++A+L + + + Sbjct: 161 LGSTSEYQILNAEHLSVETQSKENERINSIFNFVKENYREPISLEEMADLTHMTVPSFCR 220 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + +F + + + RM +A L++ N SI + + G+N+ S+F +FK + G++P Sbjct: 221 YFKKVTNKTFVQFVNEYRMVHASNLLSENEMSITEICFESGFNNFSHFNKSFKAFTGMSP 280 Query: 231 SHYFEKIIGV 240 S Y ++ V Sbjct: 281 SEYRNQLKSV 290 >UniRef50_B6VVW1 Putative uncharacterized protein n=2 Tax=Bacteroidales RepID=B6VVW1_9BACE Length = 288 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 73/249 (29%), Gaps = 11/249 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + + + F+ + ++ + + ++F Sbjct: 37 DAWELYYVVHGQGNRMAGDTLQHFEAGDVALIPPSMLHRWEYAADSADEDGCVRYLMVAF 96 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSL---------VFSLFEGIKIADSH-SLWLKER 111 + F +N P +L + + D L R Sbjct: 97 KHSLVERSMEVFPELRNRLADVMFPTDALKFGPESVRVIRKTLSEMNGMDELGRLSAMFR 156 Query: 112 LCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 L + + + +I + + L DIA + + S Sbjct: 157 LLPVIFTSSDHIFAGKPMRIEKNVRRMQQICAYVMKHYVHSIALDDIAAEVGMNRSAFCS 216 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + +G +F++ + R+ A L+ + ++ + G+N +F+ F G+ P Sbjct: 217 YFKRCKGMTFSQFVTQYRLNTACDLLKHSQKGVSEICYLVGFNDLPHFVRVFTSTMGMPP 276 Query: 231 SHYFEKIIG 239 S Y ++ Sbjct: 277 SKYRKQFKA 285 >UniRef50_C6CWE3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWE3_PAESJ Length = 278 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 74/237 (31%), Gaps = 3/237 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D +V I + S + + + + E I + Sbjct: 35 DLHEIIVVCGGQGMFTIGGQSYSASGGDILVYNKGVLHEEQSSIDNPLITYYCGFSLPKA 94 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + + +L+ + + I + + L S++ + + Sbjct: 95 -SPSEDWVIPPDVEPVIRSSRVFPEIEALMKMIVDESSIKEDGYEGISRYLINSVILLLR 153 Query: 122 KR-ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 + + + +I I N + LKD+ + + I +D S Sbjct: 154 RAVRNQQHIKQESNTGLAEQIKDYIDRNFTQNISLKDLGRQFHVNPYYISHVFKDHYRIS 213 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 R+ A +L+ + + VA+ GY++ +YF F+ G++P+ + E Sbjct: 214 PINYAIHRRIGEATRLLVTTEMKVWEVAKLLGYDNPNYFSIIFRRVTGLSPNRFRES 270 >UniRef50_C6JFK6 Transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFK6_9FIRM Length = 283 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 14/250 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV-------DID 54 D + + S + +N+ ++ K L IV+ + + + + Sbjct: 33 DEMELIYIESGSGLVRLNKEILRVKAGDLIIVNRGVLHGIKTDLKNILYFRSIVFDLNFL 92 Query: 55 KKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI----KIADSHSLWLKE 110 + L + I+ + + LF+ I K + + Sbjct: 93 SGPAGDLCQERVISLLMDNQAEFTHIISRSDDNYGNICLLFDRIHSCHKEKKPYYFVKLK 152 Query: 111 RLCISLLAMFKKRESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESL 168 L S + + KI I+ N + ++ L SE Sbjct: 153 ALFFSFFYEMLMGNYITPADKDENKSLASIKKILDYINLNYSQPLTAAELTALSNYSEYY 212 Query: 169 IKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 K + G + + D R+ AK ++ + S+ +A + G+N+TSYFI F+ G Sbjct: 213 FMKLFKQYTGKTLIAYINDLRIEKAKPMLLHSDSSVTEIALEVGFNNTSYFIKKFQQATG 272 Query: 228 VTPSHYFEKI 237 ++P + + Sbjct: 273 MSPHKFRRNL 282 >UniRef50_C7H3E2 Transcriptional regulator, AraC family n=4 Tax=Clostridiales RepID=C7H3E2_9FIRM Length = 306 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 84/241 (34%), Gaps = 5/241 (2%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + + + K ++ V + + Sbjct: 68 YQILYVASGKAHFWFDGVEEVVTSGHMVLYQPKEIQKYVYYVEDHPEV---FWIHFTGYD 124 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVF-SLFEGIKIADSHSLWLKERLCISLLAMFKK 122 N LDK+ + + P ++F + ++ + L +L + + Sbjct: 125 VKNILNYHGIPLDKHVFYSGTLPDYKMLFRKIIRELQQCEYGYEDYIASLFNIILFLVSR 184 Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFT 181 ++ + T+I + N + + D AE ++ S + + + S Sbjct: 185 QQQESEKTTTSIPEEIEAAVAYFNENYNTKVSVDDYAESLHISTNWFIRNFKQYMKISPA 244 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVT 241 + + RM A+ L+ + Y+I +A+ GY++ YF FK YGV+P+ Y + + T Sbjct: 245 QYILSLRMVNAQSLLENTEYNIGEIAEIVGYDNPLYFSRVFKKEYGVSPAQYRKNLEEST 304 Query: 242 D 242 + Sbjct: 305 E 305 >UniRef50_C9A3T9 Transcriptional regulator n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A3T9_ENTGA Length = 296 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 90/258 (34%), Gaps = 13/258 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV--CPSKLRIVDIDKKTCLS 60 FI + +I + + +L ++ R++ + + + Sbjct: 36 ECEIQYFIEGNRYFLIGEKTYKIQPGTLVMIHPDCVHNTFSGKYIYHDRVLVLYEASKFP 95 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLS----LVFSLFEGIKIADSHSLWLKERLCISL 116 F L +G I S L+ + + + + + + E I L Sbjct: 96 RIAQSMGIDLETFFLKHHGIIQIPPADRSYVQTLLAKIADEVIHKEYNYQVMVETKLIEL 155 Query: 117 LAMFKKRESVNSFILT------NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 ++ ++ + +I I N L+ IA Y +S + Sbjct: 156 FIFIQRIKNFRGLSDEPAESLGKQSELVNQIAAFIRRNYASIHSLEQIASSFYLDKSYLC 215 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G + TE R+R +++L+ + I +A+K GY++ +Y+ FK Y + Sbjct: 216 RIFKRATGYTITEYTNIQRIRQSQRLLEDTDWDIAEIARKSGYSNITYYNRVFKKYTETS 275 Query: 230 PSHYFEKIIGVTDGINKT 247 P Y +K I + + + Sbjct: 276 PLQYRKKQIAYKESLREK 293 >UniRef50_B8DFE8 Transcriptional regulator, AraC family n=18 Tax=Firmicutes RepID=B8DFE8_LISMH Length = 292 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 95/259 (36%), Gaps = 20/259 (7%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI-VDIDKKTCLSF 61 + + + S +L +N I K+ + +++ PS R+ + D Sbjct: 34 EIEIIYALKGSLNLGVNDMPIQLKEGEIQVINGGDVHYFLASPSSERVVIQFDLSLFQEE 93 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPP------LSLVFSLFEGIKIADSHSLWLKERLCIS 115 + + L + +++ E P SL+ ++ E ++ + ++ Sbjct: 94 MQMDDQMQTLREMLTEMAHLSREWPEETVAKMQSLIMNIHEESSGEKPGKHYILKADLLA 153 Query: 116 LLAMFKKRESVNSFILTNINT------------FTCKITGIISFNIERQWHLKDIAELIY 163 ++ + + ++ + +I + + + L+++A Sbjct: 154 IIGLIYREIPQIKTQPDSVISEEAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVANYTG 213 Query: 164 TSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 S K + + G +F L D R+ AK ++ + ++ + VA+ G++S F AF Sbjct: 214 FSTYYFTKFFKRNTGMTFVTFLNDYRLNKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAF 273 Query: 223 KDYYGVTPSHYFEKIIGVT 241 K GV P Y + I G Sbjct: 274 KRAMGVAPLKYRKTIYGNN 292 >UniRef50_C0EGE3 Putative uncharacterized protein n=2 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGE3_9CLOT Length = 371 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 81/251 (32%), Gaps = 18/251 (7%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDI--------- 53 + + + + K +++I + + + + +V+I Sbjct: 113 FFELIYVYSGTCYCNFSGEEFCLSKGTIWIFNTQCAHSVVIPDDGSTLVNILLRKSTFSS 172 Query: 54 ----DKKTCLSFFIDVNNELPGKFTLDKNGYIAEEE--PPLSLVFSLFEGIKIADSHSLW 107 + F + T + + +F + ++ Sbjct: 173 AILNMIQDNDLFLDFFLKSIYDANTQPHHMQFQAQPGSEIEFYIFKIILEYANQSNYRQS 232 Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTF-TCKITGIISFNIERQWHLKDIAELIYTSE 166 + + + +LL + + S + I IS + LK AE + S Sbjct: 233 IMKLMLSTLLTELARDYQLRSETEDKTASIDILNIIAYISDHYT-DVTLKSTAEHFHYSP 291 Query: 167 SLIKK-RLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 I K + G SF E ++ ++ A+ L+ + VA GY+ S F FK + Sbjct: 292 DYISKCIYKYTGYSFLEYMKRYKLSKAEYLLLHTKLPLEQVASMVGYSQRSSFDREFKKH 351 Query: 226 YGVTPSHYFEK 236 Y +TPS Y + Sbjct: 352 YSLTPSRYRSQ 362 >UniRef50_C6D083 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D083_PAESJ Length = 291 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 14/246 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS--KLRIVDIDKKTCLS 60 +V + I + + +LF + ++ + S Sbjct: 40 FVEITYVSEGAGIHYIAGEAVPVEHGTLFFIPVGQSHVFRPKTPKKDRPLIVYNCLLPAS 99 Query: 61 FFIDVNNELPG---------KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 + ++ + P L ++ L++ + + Sbjct: 100 YLSELRDGFPYATEILDCFADEGLSWFSVKDSTGEYHAMFRELYQEFAAKPPAYMAVLAS 159 Query: 112 LCISLLAMFKKRESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESLI 169 L + +L + + + + + I N + L ++A SE Sbjct: 160 LVMRILTGLYRHKLQIIAPAGDRPQWLSVDEAIAFIDRNYASELKLGELAAQAKLSERQF 219 Query: 170 KKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + R G S E ++ RM A +L+T+ S+ +A GY +F FK GV Sbjct: 220 SRLFRRHTGMSLIEYVQSIRMDAACRLLTTRHSSVEDIAGAVGYADMKFFYRLFKKKTGV 279 Query: 229 TPSHYF 234 TP Y Sbjct: 280 TPRQYR 285 >UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGS5_CLOCL Length = 293 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 13/249 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVIS---FKKNSLFIVSDKIRRELPVCPSK-LRIVDIDKKT 57 D V + I ++ + ++ KK ++ L V K R+++I+ Sbjct: 39 DRVEIMYVIDGQCEIDVATDNVNNLKLKKGDFILLDAGTVHRLIVLGEKSCRMLNIEFSF 98 Query: 58 CLS--------FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 I+ + F + + ++ + +S Sbjct: 99 IEDSDILTSIRLLIEKVKSIALLFEMRCPFLLLKDNNDIYHSLKNIVIQLGMESEENQFS 158 Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 +L L + + ++++ + N + K IS N ++ +KDI+ + +E + Sbjct: 159 IQLLFYELLLKISKVAMSNENTSTSNIYINKAKHFISMNYDKDITIKDISSYVNINEDYL 218 Query: 170 KKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 + + G + TE + R+ AK L+++ I + G NS YF FK G+ Sbjct: 219 NRIFKKHTGHTITEYVTLFRIEKAKMLLSNTDIPIIDICSYVGINSRQYFSQVFKKCTGI 278 Query: 229 TPSHYFEKI 237 +P Y + I Sbjct: 279 SPYKYRKSI 287 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 8/250 (3%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 M VCSV+FI +F+ I + +F + +V + +R + + ++ T Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + N + K ++ P L+ + + + + E L S L++F Sbjct: 61 YLQCTNIQTVTVPVPAK--FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 + + + + + + K+ I++ + W LKDI + +Y SESL+KK+L+ E T+F Sbjct: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP----SHYF-E 235 ++IL D RM++AK LI S+N +A++CGY STSYFI AF+ ++G +P Y + Sbjct: 179 SQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 Query: 236 KIIGVTDGIN 245 + G+ G Sbjct: 238 RHTGMNTGNT 247 >UniRef50_C9KMJ8 Methylphosphotriester-DNA alkyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMJ8_9FIRM Length = 283 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 6/236 (2%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFID 64 + + + + + L +V+ + S I + Sbjct: 45 EILFIEKGHCRMHLKEGSLQLHTDDLILVNSDTLHDFKTSSS-FTAFTIHIGALHLCGLA 103 Query: 65 VNNELPGKFTLDKNGYIAEEEPPLSLVFS---LFEGIKIADSHSLWLKERLCISLLAMFK 121 + + L L + L +K D + L +L+ Sbjct: 104 PGHLTKSEAPLVLPLGKDGRHIFLRQLLKEVKLLAALKGEDDERCEIGAALAQALVISVT 163 Query: 122 KRESVNSFILTNINTFT-CKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTS 179 ++ N + +I I + L DIAE ++ + + +D G+S Sbjct: 164 ALAEEDAGNEENPSFTMGTRIKEYIDAHYLEDLKLADIAEALHINLYYLSHTFKDLTGSS 223 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + + R+ A+ L+ + + +I +A +CGYN+++YF F + G+ P Y + Sbjct: 224 PMQYIIRRRIEEAQTLLLTTNMTITDIAMQCGYNNSNYFQSVFSNIVGMPPGKYRK 279 >UniRef50_A5ZUG1 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUG1_9FIRM Length = 277 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 84/243 (34%), Gaps = 9/243 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + S + +I + S KK+ L IV+ I+ + +SF Sbjct: 40 AFTELFYVSEGSGEFLIENQHFSIKKDDLIIVNPHIQHTEISLSASPLSYYTVGVDGISF 99 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 E K+ + L SLF+ + + + + L++ + Sbjct: 100 SFHDQKEFQIFHYHQKHADL------LFYFHSLFQELDEKNDGYEEICKHTLAILISQLR 153 Query: 122 K--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGT 178 + F + + + + + +L+ +A L + ++ + R G Sbjct: 154 RFAVSDFQLFPSFHPSKECALVKRYLDSHYSDDINLEQLASLSHLNKYYLSHEFTRYYGI 213 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 S L R+ K L+ + + I+ +A G++S SY +F+ Y G+T Y Sbjct: 214 SPISYLTHRRIEVCKNLLENTDHEISDIAHLAGFSSQSYLAQSFRKYCGMTAGEYRRSKK 273 Query: 239 GVT 241 T Sbjct: 274 NQT 276 >UniRef50_C6IZN9 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZN9_9BACL Length = 301 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 82/259 (31%), Gaps = 18/259 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSK---LRIVDIDKKTC 58 D + ++ + + + D + Sbjct: 42 DEAEFFYCLEGETLFQVDTDYFPVGAGEAVFIDGGDIHAAHAHGDQGCAFFSLVFDTQLL 101 Query: 59 LSFFIDVNNE-----LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSL----WLK 109 S D E L + E LSL+ + ++ + S +K Sbjct: 102 ASAHYDAVQENLVLPLQERKATFPRHIRRETAADLSLLEHIVALMRSCSTESPGYEGAVK 161 Query: 110 ERLCISLLAMFKKRESVNSFILTNIN-----TFTCKITGIISFNIERQWHLKDIAELIYT 164 L + L + +VN ++ + + I N L ++A LI Sbjct: 162 GHLFLMLAEIAATGRAVNRSHSSSRSESSKIDRLKTVIQHIQHNYSHPIRLAELAALIPM 221 Query: 165 SESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 SE + + + + + R+R A +L+ I+ +A + G+++ SYFI F+ Sbjct: 222 SEGQFCRFFKSMTRQTPMDYINSYRIRQAAELLREPERKISDIALEVGFDNISYFIRVFR 281 Query: 224 DYYGVTPSHYFEKIIGVTD 242 +PS + +++ + Sbjct: 282 KAMNCSPSEFRKRLQASVE 300 >UniRef50_C0EDW5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDW5_9CLOT Length = 326 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 18/252 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK----- 56 Y + ++ + I++ I L + + + +I Sbjct: 72 TYFEMIYVYHGKAYNNFADSSMTLHTGDILILNPNIPHRLYIESPEDIVFNIMISKDLFE 131 Query: 57 -------TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLS----LVFSLFEGIKIADSHS 105 + F + + + P L + E + Sbjct: 132 KSFLLLISENDLFSNFFISYLYHMNQASDSILFRHNPESGITAVLDMMIEEFFNKPMGYE 191 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 L+ L ++ + + + I I N L A+ S Sbjct: 192 KALESFLALTFTRLTRSYSHQENLEELKKQQKIMPIIAYIRENFAEA-TLVSTAQQFNYS 250 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 E + + ++ G SF EI ++ YA++L+ ++ I+ +AQ+ GY + SYF AFK Sbjct: 251 EKYLSRLIKQRTGKSFNEISIGYKLEYARELLLNSVLPISEIAQRVGYANVSYFFKAFKK 310 Query: 225 YYGVTPSHYFEK 236 Y TP + + Sbjct: 311 RYMQTPYQFRKS 322 >UniRef50_C9KN89 Transcriptional regulator, AraC family n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN89_9FIRM Length = 286 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 71/246 (28%), Gaps = 4/246 (1%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKKTCLSFF 62 + I + I+ + + + I K+ E + S I Sbjct: 41 IELNFMISGNGTHIVGNEICHTQPGDIIIYDSKVMHDESLMLDSLTDACCIAVTGLKRPG 100 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 N LP L ++ + E + ++++ Sbjct: 101 ARPNALLPPGLHPCIPC--QSIAQELCTLYHIIERSLAKPHGYPAANAAAQTIVHLVWQQ 158 Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFT 181 N ++ I + ++DIA+ + S I + + Sbjct: 159 ISERAVRAAGQENMLMERVRSYIEQHYAEALSIRDIAQEFHASRDYIAHAFKHTTNYAPL 218 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVT 241 + LR R+ A+ L+ S+ VA + G++ +YF F+ G+ P + Sbjct: 219 QYLRRWRIGKAQTLLIDTDLSLTEVASRVGFDDPNYFSRVFRQVIGMPPGTFRRTWRAAQ 278 Query: 242 DGINKT 247 + Sbjct: 279 RKQQRA 284 >UniRef50_C0EIY9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIY9_9CLOT Length = 327 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 91/257 (35%), Gaps = 18/257 (7%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS-- 60 + + S ++ + K L ++ + + V + +I K Sbjct: 71 FFEIIYVYAGSCTTTVDGEQMVLKAGDLLFLNIQTGHVISVDSWDDIVFNILIKPDFLEQ 130 Query: 61 -----------FFIDVNNELPGKFTLDKNGYIAEE-EPPLSLVFSLFEGIKIADSHSLWL 108 F L + +K E + S + D ++ + Sbjct: 131 SLFHLLSENDVFLNFYLESLYNRTMSEKYLLFQENTDEIASTADRIVIEYLRQDPFAMKV 190 Query: 109 KERLCISLLAMFKK--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 E ++L+++ + R + F +I +S + LK AE + + Sbjct: 191 IEAQFVTLVSLLARENRRQAPTGETIPGKAFVPEILQWLSNHYAGA-TLKSTAEHFHYTT 249 Query: 167 SLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 S + +++ G +F I++D ++R A++ + S S+ ++ + GY +YF FK+ Sbjct: 250 SYLSFLIKEYTGKNFLRIIQDFKIREAERYLKETSLSVERISDQLGYKDAAYFCRVFKNT 309 Query: 226 YGVTPSHYFEKIIGVTD 242 G TPS Y + Sbjct: 310 TGATPSEYRRSQQENSS 326 >UniRef50_C6D1V9 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1V9_PAESJ Length = 279 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSK----LRIVDIDKKTCL 59 + LII+ + S + N+L + + + ++ +R V + + L Sbjct: 30 MELTYVHEGRGLLIIDGKSYSIEPNTLLVFPPFQMHRIQIQVTEAEPFIRSVLLFEPAVL 89 Query: 60 SFFIDVNNELPGKF----TLDKNGYIAEEEPPLSLVFSLFEGIK-----IADSHSLWLKE 110 +++ L F N + P +L ++ Sbjct: 90 HGYLNDFPSLKSFFQRLMLQQANVHPVNAMPENEPFVALLRQFSITMGGKREADFEENMG 149 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 +SL+ K+ S L N +I G I + + L+D+A ++ S + Sbjct: 150 VFLLSLVHQLKQSPDGESAYLKKHNLHVEEIIGWIEKHYMDPFRLEDLAGELHLSPYHVA 209 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 ++ GT+ + TR+R+A L+ + ++ + + G + SYF F+ GV Sbjct: 210 HLFKESTGTTIVAYTQATRIRHACSLLRKTTLPLSEIGYRVGIANPSYFSKIFRQIMGVA 269 Query: 230 PSHYFEKII 238 P Y + +I Sbjct: 270 PLTYRQHLI 278 >UniRef50_C1DC70 Transcriptional regulator, AraC family protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DC70_LARHH Length = 321 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 82/253 (32%), Gaps = 7/253 (2%) Query: 3 YVCSVVFICQSFDLIINR-RVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 ++ ++ + I+ I + ++ I + + R + + Sbjct: 58 FIELILPQDNPISVTIDTADPIHVWPGEILLIPPFIAHHIEAENTDDRRTTLKINLQKLY 117 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + N + L E I + + ++ + Sbjct: 118 LMLANTPYAPQIEHFYQIGSNGRVYLNETATQLAEIIDRIGNEYTLRNFSDIVHVIDILC 177 Query: 122 KRESVNSFILTNINT-----FTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 + + +++ N T + ++ N +L ++A+ S+S + + Sbjct: 178 QERPSDEWMVPNKKTTREMNLCATLNDMVDNNPGIDINLDELAQQFNMSKSTFCRFFKKH 237 Query: 177 -GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G SF L + +++ A + SI ++ + G++S S+F FK G TP + + Sbjct: 238 FGVSFHTWLLEKKVKSACCYLQEPDMSIQAISYQLGFSSPSHFTKVFKQLTGTTPKEFRD 297 Query: 236 KIIGVTDGINKTI 248 + N + Sbjct: 298 NPLDFPRTENDAL 310 >UniRef50_UPI0001788C94 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C94 Length = 315 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 24/259 (9%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV---DIDKKTC 58 DY+ F + + + ++F++ + + P K V + Sbjct: 51 DYLQIWYVSKGEFIHTLYGQKYRMVQGNIFVLPPYSVHRVEMVPGKELEVLGCEFMPAFI 110 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPP--------------LSLVFSLFEGIKIADSH 104 + +E ++ E+ L+ + Sbjct: 111 NERLEGMPDEPQLFDLSFIKPFVTTEDRVPLKITLTGGSDLVVKELLTEMLNEFGGRGPF 170 Query: 105 SLWLKERLCISLLAMFKKRESVNSFILT------NINTFTCKITGIISFNIERQWHLKDI 158 L + + LLA+ + + S ++ + I + ++ L+D+ Sbjct: 171 FDILLKANLLKLLAIVNREHAEQSKHISVTAGSAPYREPILESVQYIHDHFDQPLWLEDL 230 Query: 159 AELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 S + +R ++ G +F++ L + R+R A +L+T ++ V K G+N Y Sbjct: 231 CARTMMSRTSFCRRFKEVTGWTFSQYLANYRIRMAMRLLTEPELTVTDVCFKVGFNELPY 290 Query: 218 FICAFKDYYGVTPSHYFEK 236 F FK Y G TP++Y + Sbjct: 291 FCRIFKKYTGTTPAYYKKN 309 >UniRef50_C6CVH4 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVH4_PAESJ Length = 287 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 77/248 (31%), Gaps = 9/248 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ + + + + F++ + + + Sbjct: 42 DFYLMHTVLEGKGEFTCGGKSYPLQAGDTFLIEPEALVSYISNADEPWLYRWVAFNGPQA 101 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF- 120 + G + A L +F + D + LLA F Sbjct: 102 AE--LAQAAGFSVANPVAETAAIRRVGVLYNHIFSIFRKNDPAAHLKAAGYLQLLLAEFC 159 Query: 121 ----KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD- 175 ++ + + + ++ +S + ++ +AE + + + + + Sbjct: 160 TVHKLSEDNAAMTNMDDTDKLIQQMIHYLSTQYAQPVSIEQMAESFGYNRAYLSRVFKRY 219 Query: 176 EGTSFTEILRDTRMRYAKKLITSNS-YSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G S L R+ A+++I +I +A G + YF F+ +YG++PS Y Sbjct: 220 TGESPITFLLKLRIDKARQMIREREGLTIEQIAASVGLQDSLYFSKQFRRFYGLSPSAYR 279 Query: 235 EKIIGVTD 242 E + + Sbjct: 280 ESMRQMKT 287 >UniRef50_A3I6W7 YbbB n=2 Tax=Bacillaceae RepID=A3I6W7_9BACI Length = 523 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 5/239 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 Y + I + L N I K I+ E+ L + + T Sbjct: 28 TYFSLFILISGNGTLKTNHETIHLMKEKCVIIPPNSHVEIHTADEPLCLYQLTFNTI--- 84 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 ++ ++ FT + + L+ +++ + D H+++ + L+ +F Sbjct: 85 YLSESHAPTSLFTSVRELRLLPFSQCNKLLEAIYRCRQAKDEHTIFEQHVRFQELM-LFI 143 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 ++ IL N + + R W ++ +AEL + +D G Sbjct: 144 FEQNQPKPILQNDRQSVEQSIQYLHKYFGRDWTVEQLAELAEVPRWSYSRIFKDITGQIP 203 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 L R+ AK+L+ + + + ++Q G+N+ YF FK++ G++P Y Sbjct: 204 LHYLNSIRIEKAKQLLMTTNDRVFEISQSIGFNNEYYFNRRFKEHVGISPGQYRRSQSN 262 >UniRef50_UPI0001C35596 transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35596 Length = 279 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 7/232 (3%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 + ++ I + I R KK L + R P L + Sbjct: 31 IPFIDITYVIDGKAEYNIGGRTYIVKKGDLICIPQNTFRSAVNIPEDLMECY----STNI 86 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 F + + + +I +S + E D + + +L Sbjct: 87 FLRNQFGQEAY-LPVPIISHIGIIPRLISRFHEIHEEWVQKDFGYMLKIRGILCLILYQI 145 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTS 179 +N L+ + +S + + +AE + R+ G + Sbjct: 146 SNL-ILNENHLSQEDPRIKSSIRYMSLHYAEPLTIDRMAEQFHLHPVYYGSLFREAMGMT 204 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 F + L R+ YA+ ++ S YS++ VA +CG++ YF FK+ G+ PS Sbjct: 205 FKQYLISLRLNYAENMLKSGEYSVSEVALQCGFSDIFYFSKLFKEKKGIPPS 256 >UniRef50_B9IXY7 Transcriptional regulator, AraC/XylS family n=7 Tax=Bacillus cereus RepID=B9IXY7_BACCQ Length = 286 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 8/248 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + + I + I ++++L IV+ I + I F Sbjct: 41 FTELLYITKGKGTFIFYKEEIPVQEHNLIIVNPNIEHTEKSDTNHPLEY-IALGIQGLSF 99 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 + N P + + Y +++ L + L E ++ + + + LL + Sbjct: 100 SSIENPSP----VTIHNYKQDQKNFLFYLQQLVEEVENHQEDYDLIIQNILEILLLKMMR 155 Query: 123 RESVNSFILT--NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTS 179 ++S N + IN I I + L +A + + ++ + R G S Sbjct: 156 KKSFNVEKTSTQKINKDIEFIKNYIKQHFHENISLDTLASISHINKYYLSHSFRKFVGVS 215 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 E L TR+R +K L+ + +YSI+ ++ G++S S+F +FK ++PS Y I Sbjct: 216 PIEYLIQTRIRESKILLETTNYSISNISTITGFSSQSFFAQSFKRETNLSPSQYRNAINS 275 Query: 240 VTDGINKT 247 + ++ + Sbjct: 276 SKNKLDSS 283 >UniRef50_UPI000178921D transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178921D Length = 318 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 94/245 (38%), Gaps = 7/245 (2%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + ++IN + F++ + ++ + + V + + + LS + Sbjct: 62 LELNYIQGGTGFILINGMKLPFRQGDIIFINSNDLHRAYETENLVMDVIMFEPSLLSIDL 121 Query: 64 DVNNEL--PGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + +L P + + + + L+ + E K + + L I L++ Sbjct: 122 KFDPDLMAPFRSLGNVDRQSPVHDELARLLRRMMEEYKARGTSYMSLIRSDLIRFLSLAN 181 Query: 122 KR----ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE- 176 + + I ++ + +++ W L+++++L + S S + Sbjct: 182 RHLSSPAQEHRPIKGRGMHALKEVLRTMELHLDYGWTLQELSDLTHLSPSRFSALFQQAV 241 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 GTS L R+ +A L+ + I +A+ CG+ + S F FK + G +PS E+ Sbjct: 242 GTSPHHYLIQLRLTHAVHLLETTDQKIIEIAETCGFRNLSNFNRLFKQHVGASPSEIRER 301 Query: 237 IIGVT 241 + Sbjct: 302 AYAGS 306 >UniRef50_C0EGG3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGG3_9CLOT Length = 343 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 89/254 (35%), Gaps = 25/254 (9%) Query: 5 CSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFID 64 + + + K++ + I++ + + +I L F Sbjct: 72 ELIYMYRGGSIQFFQDKELELKQHDILILNPNTIHAPYTTQEEDCLFNILISKSL-FEQS 130 Query: 65 VNNELPGK-------------------FTLDKNGYIAEEEPPLSLVFSLF-EGIKIADSH 104 + + L + +G + L+ L E I + + Sbjct: 131 MMSLLYDNHMFTGFIADCLYHVSTAVEYLYFPSGNNGMSDENSFLIEKLIAEYINKKEGY 190 Query: 105 SLWLKERLCISLLAMFKKRESVNSFILTNINT--FTCKITGIISFNIERQWHLKDIAELI 162 +K L + L + + ++ + +I I+ NI LK ++E Sbjct: 191 KNSMKAWLVLLFLNLSRTHSQLHPLKQGEFDNRGVIAEIISYINNNI-EDVSLKGLSEQF 249 Query: 163 YTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICA 221 S + + ++ G SF EI++ +M AK + ++ I+ V G+ S +YF Sbjct: 250 NYSPEYLSRIIKQNTGQSFIEIVKRFKMEKAKYYLETSDLPISAVMNLSGFKSINYFYKV 309 Query: 222 FKDYYGVTPSHYFE 235 FK Y G++PS Y + Sbjct: 310 FKRYNGISPSAYRK 323 >UniRef50_A5KPF1 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KPF1_9FIRM Length = 260 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 10/240 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + + I+ +K +L I++ IR + + L+F Sbjct: 26 FSELFYVLNGCGSFIVEEESFPIRKQNLIIINPSIRHTEVSDKNSPLEYIVLGVEGLNFL 85 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 I + E D E ++ + + + L +L+ + Sbjct: 86 IYNDKEYLNIQCED------FSENLDFYFHTILREMDEQKESYETICQNLLEALIIQLSR 139 Query: 123 RESVNSFILTNINTFTCK---ITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGT 178 +L + T + I N L +AEL + ++ + G Sbjct: 140 HTGSPVEMLPSSKKITRECSYAKRFIDSNFRENITLDTLAELTHLNKYYFAHTFTEIYGI 199 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + L R+ +++L+TS + +A++CG++S+SYF F+ G+TP+ Y ++ I Sbjct: 200 APMNYLAQKRIFTSQELLTSTDLNQAAIAKQCGFSSSSYFSQCFRKICGMTPTAYRKQFI 259 >UniRef50_B1R1I5 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=B1R1I5_CLOBU Length = 284 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 14/246 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRE---LPVCPSKLRIVDIDKKTC 58 D++ + + + I+ + K+ +L + + S L+ + + + Sbjct: 35 DFIEFSYVVSGNVNYKIDDKFYLIKEKTLLPFNAGVYHHEYFTKGINSNLKELHVGFRNL 94 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 + +N+ L T+ + E + E + ++ + + L + L+A Sbjct: 95 KIDGLPLNHILKNSSTVPMQ-FNQYGEDFHKCCLEIIEEHECSEIGKELVLKSLVMKLIA 153 Query: 119 MFKKRESVNSFILT---------NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 +F K + + + I N L DI++ +Y S I Sbjct: 154 LFLKETNYVKNTKKIKQYSLPFYDKSNIVEIIIDYFEKNYMNNISLNDISKNMYISSVYI 213 Query: 170 KKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 K + G S L + R++ AK L+ + ++AQ GY+ YF FK YY Sbjct: 214 SKTFKEKTGESPINYLINLRLQKAKDLLLETEMPVKIIAQSVGYSDAYYFSKLFKKYYEY 273 Query: 229 TPSHYF 234 +P+ Y Sbjct: 274 SPNKYR 279 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 85/221 (38%), Gaps = 8/221 (3%) Query: 20 RRVISFKKNSLF-IVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKN 78 + + KN + ++ + L K+ + F+ +N+ L + Sbjct: 286 HQAVEAVKNEIMSLIISGDLQALHDYFEKVGGQAGSLQLTDGKFLVINHSLALDQISEVL 345 Query: 79 GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFT 138 G + + + + + + W K + + ++ N ++ + Sbjct: 346 GLFSHQGKSAESLLQTIDQLPGSMELKSWFKAACQDFETRLDRWKQQANPYVNS-----I 400 Query: 139 CKITGIISFNI-ERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLI 196 + I + + +K +AE I+ + S + + E G +FT + +++ A+ L+ Sbjct: 401 QQAIDYIEEHYLDSDLSIKQVAENIHLNPSYLSTLFKKETGETFTGYVNKLKLQKAQVLL 460 Query: 197 TSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + I+ + Q G+ ++YF FK ++ ++PS + + Sbjct: 461 RNTDMKISEICQTVGFEDSTYFSSVFKKHFQISPSEFRQNH 501 >UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=C5RE92_CLOCL Length = 286 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 79/248 (31%), Gaps = 9/248 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKT---C 58 + I F L +N + K L + I + D K+ Sbjct: 39 TEYEIIRIISGEFLLTLNGNELKLKTGDLAFIHAGILHGGTPIDCVYECIVFDMKSLLKV 98 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 S ++ + + + ++ LFE + + + LL Sbjct: 99 NSTCSKQIQDIIHNSKVINSLLPTDNLELQTVCNYLFESMAQKKLGYELVTQGSLYHLLG 158 Query: 119 MFKKRE--SVNSFILTNINTFTCK---ITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + + S + + + +I L+D+++ + + Sbjct: 159 IILEHRLYSTPKEATSKNQQRINQFKNVLSLIEQQYPDPLTLEDLSKAAGMTPKYFCRFF 218 Query: 174 RD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 R S + L R+ + + + S + SI +A CG+N SYFI FK Y GVTP Sbjct: 219 RGMTQRSPIDYLNYYRIESSCEQLVSTNESITEIALNCGFNDISYFIKTFKKYKGVTPKQ 278 Query: 233 YFEKIIGV 240 Y + Sbjct: 279 YLKDYHAY 286 >UniRef50_C5RJM2 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJM2_CLOCL Length = 286 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 89/246 (36%), Gaps = 12/246 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR-----------ELPVCPSKLRI 50 DY + IIN R KK + +++ + + V + + Sbjct: 33 DYYEIYYQLYGERYYIINNRSYYIKKGDIVLINKGVFHKTTYAGAINYERVLVGFKEHIL 92 Query: 51 VDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE 110 DI + + + + L E L+ + +++S L Sbjct: 93 KDIIPQEEFTELLSTFEKDISIINLSIQNQHTFEVLFTKLIHENNNRLSSYETYSKLLLV 152 Query: 111 RLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L I++ +K + ++ +I I+ N ++ +L +A S + Sbjct: 153 ELLININRHLEKGHVSYLEFPSALHKKVSEIAQYITDNCDKVLNLDILAHKFLISPYYLS 212 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + +D G + + + R++ ++ L+ S I + + G+NST +F F + ++ Sbjct: 213 RVFKDVTGFNLIQFINSERIKKSQYLLIETSLPIYEICEVVGFNSTIHFTRVFNSFTSMS 272 Query: 230 PSHYFE 235 PS Y + Sbjct: 273 PSKYRK 278 >UniRef50_UPI0001C368B4 two-component response regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C368B4 Length = 289 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 2/242 (0%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + ++N ++ ++ + ++ + R Sbjct: 49 YQLLYIASGKAEFVLNGAAVTIPAGNMVLYGPGEYQQYTYL-LEDRPEVFWVHFTGYEAA 107 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 D+ + + L S+ +++ S LL +++ Sbjct: 108 DLLSRTGLSLEDFRILRTGCASRYQDLFLSMIRELQLPRPLSGDFSSLYFKELLLTVERQ 167 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTE 182 + I N + D A ++ S + + G + Sbjct: 168 IAEGGKNKPQIQKEMEHAVHFFHENFSADIDISDYAASLHMSTCWFIRSFKQYVGVPPLQ 227 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTD 242 L R+ AK+L+ S ++ + GY + YF FK G++P+ Y + + Sbjct: 228 YLTSIRINKAKELLESTDCPVSEIGSIIGYENPLYFSRIFKKQTGLSPAAYRKVLPSAHT 287 Query: 243 GI 244 Sbjct: 288 ST 289 >UniRef50_C0X5H9 AraC family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X5H9_ENTFA Length = 272 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 14/242 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 ++ + + + I+ + ++F+ + + + + + Sbjct: 34 FLEISILLEGESEYIVQGQQYHATAGTVFLFNPRTEHG-EQQKAGTYSHQLHIGISNLYL 92 Query: 63 IDV-NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF- 120 + N P K L ++ L + + + + S + L I LL Sbjct: 93 EGLARNVFPNKSALLDLSHL--HGAFLEKAWQIVHELNHQEVESALQIKALVIELLVYIL 150 Query: 121 --------KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 K E+ S + + + + L+ +AE++Y + + + K Sbjct: 151 RSLAVDQENKIETRLSKTEKRKRNLVNHTIYYLETHHDEEITLEQLAEMLYVTPTYLSKT 210 Query: 173 LRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G L R+ +AK+L+ ++S S+ VA+ GY +F FK YYG +PS Sbjct: 211 FKAATGVGPINYLIQIRLNHAKELLKNDSLSVKEVAKTVGYEDAYHFSKLFKKYYGKSPS 270 Query: 232 HY 233 + Sbjct: 271 QF 272 >UniRef50_C4LCV7 Transcriptional regulator, AraC family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LCV7_TOLAT Length = 275 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 86/243 (35%), Gaps = 4/243 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS- 60 D+ V+ + + R I + S+ + D+ + + Sbjct: 33 DFHELVLVKSGCGIHVCDGRAIHVSRGSVIYLKDEDVHCFDHMDNLCLTNVLFMPDEFHS 92 Query: 61 --FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 + E + ++ L+ + + D++S + E L L Sbjct: 93 SPHLTSLLTESCRSDSGQMMVCPQIQQQAELLLTQIHDENDRQDAYSSLMVETLFSQLAV 152 Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EG 177 + + +N + + I+ N + + + ++++ + ++L++ G Sbjct: 153 LLWRDRQLNKKYRSEEQDNLINLINYINENYQNELNWSELSDSFNIPLRTLNRKLQEHTG 212 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + L R+ +A L++ + ++ +A CG+N ++YF F + VTP Y ++ Sbjct: 213 LTPNNYLGRVRLCHASYLLSHSQDAVTDIAFSCGFNDSNYFSSKFHQAFNVTPMQYRKRY 272 Query: 238 IGV 240 Sbjct: 273 RNS 275 >UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z9N2_9FIRM Length = 293 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 14/247 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVD-------IDK 55 V +V + +N + + V + + + + K Sbjct: 43 EVELIVIKKGQGLVNVNLVTYTVNAGDVVFVFPGQLHSISQKDYSIMEYENILFKSSLLK 102 Query: 56 KTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI-----KIADSHSLWLKE 110 + D + L+ I ++SL I K ++ L +K Sbjct: 103 SSGYDLCNDKFIQPLLSGNLNIYPVINSNFDFHDSLYSLINEIDKLCDKRPYAYQLAVKS 162 Query: 111 RLCISLLAMFKKRE-SVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLI 169 L + + I I ++ + + +++IA + S+S Sbjct: 163 YLFQIFYLLISNCGLNQIKPISKKALEKIKTILSYVAEHFQDNISIEEIAGHCFYSKSYF 222 Query: 170 KKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGV 228 K ++ G SF + L D R+ A KL+T+ S I +A G+++ SYF FK YG+ Sbjct: 223 MKFFKETMGMSFVQYLNDYRLEVAAKLLTTTSDDIINIAINTGFDNLSYFNRCFKKKYGI 282 Query: 229 TPSHYFE 235 TP Y + Sbjct: 283 TPGKYRK 289 >UniRef50_A6LWT0 Transcriptional regulator, AraC family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LWT0_CLOB8 Length = 263 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 88/236 (37%), Gaps = 10/236 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCP-SKLRIVDIDKKTCLS 60 YV I S ++ IN K + I SK+ + S Sbjct: 32 PYVEIAYVIEGSIEVTINDTQCCLKAGEVSICFPNDIHTFNSDGFSKIILFIFSPDLTRS 91 Query: 61 FF-IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 FF I ++ L F ++ SL++ L + K + + ++ + L ++L Sbjct: 92 FFGIRMDKTLENPFMSKN----IVDDGISSLLYMLHDEYKSVN--NKYVIKGLLYTILGK 145 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGT 178 + T N+ + I + + L IA+ + S+ + + G Sbjct: 146 LDSHFTFKK-SSTFYNSTMQNLLKYIEIHYHEKISLDSIAKDLGFSKFYLSRIFSNKIGY 204 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 F + + R+ A+KL++ + ++A +CG+ S F FK+ +TP+ + Sbjct: 205 QFNDYINRLRINKAQKLLSETDLPVTIIALECGFESQRNFNRIFKELTALTPTKFR 260 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 76/248 (30%), Gaps = 4/248 (1%) Query: 1 MDYVCSVVFICQSF-DLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCL 59 +D+ + + D + + N + + P + ++ I Sbjct: 38 VDFPRLNIILNGQLPDRALGENASPLEANDVLYI-PGDSWNCPQWQAPCLLLSILFDKQR 96 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + ++K + S + +++ + +SLL+ Sbjct: 97 LECSLQHWNGKAITVVEKRQALRRGPRVGSFLLQALNELRM-QPQEQRTARSIVVSLLSH 155 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEG-T 178 + + I + + + +A+ Y S + + + G Sbjct: 156 CHDLLGSQAQTSSRSQALFEAIRQYMDAHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPM 215 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 F E L R+ A+ L+ + + +A CG+ ++YF F+ +PS Y + Sbjct: 216 GFNEYLNHIRLEQARMLLKGHDMKVKDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYH 275 Query: 239 GVTDGINK 246 I+ Sbjct: 276 SQLTEISS 283 >UniRef50_A6M2W7 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M2W7_CLOB8 Length = 283 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 85/245 (34%), Gaps = 13/245 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRREL--PVCPSKLRIVDIDKKTCLSF 61 + + + + INR + + I+ S ++ +F Sbjct: 35 IEIIYLVEGTLKACINRDTYDLTQGDILIIGGGEIHCFFKEKKFSNRAVIQFRTSIYDNF 94 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVF----SLFEGIKIADSHSLWLKERLCISLL 117 + K +++ ++ +L+ + A+ + + L Sbjct: 95 LSGTKDTKIIKPMWNQSIHLTMGNEIHALMERHINEIINEYSKAEEGYKLIIKARLYDLA 154 Query: 118 AMFKKRESVNSFILTNINTFTCK------ITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + + S+ +++ + + + N + + L DI++ I S+ K Sbjct: 155 GILIRYMPKQSYSSEDLSREKERLKKMDSVFQYVDTNYQERIDLDDISKSIGFSKYYFTK 214 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 ++ G +F + L + R++ A+ I +I +A CG+NS F FK+ G TP Sbjct: 215 FFKENTGVTFLDYLNNYRIKKAEWRIIEEDETIAEIAYNCGFNSIKTFNRLFKNIVGCTP 274 Query: 231 SHYFE 235 Y Sbjct: 275 MKYRR 279 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 2/170 (1%) Query: 72 KFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK-ERLCISLLAMFKKRESVNSFI 130 ++ +N + +EP S + S + +R + V + I Sbjct: 369 QYHWTENEVKSTQEPVEDAEISQDLPSALPYSEDGMICWDRWREQISGRLYAASRVLTQI 428 Query: 131 LTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRDTRM 189 + N I + + + L+ IA + S I ++ + E G + ++ L R+ Sbjct: 429 HSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKFKQEFGVTLSDFLGRIRI 488 Query: 190 RYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 AK L+ + I +A+ GY YF FK G TP+ Y +K + Sbjct: 489 EKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNEYRKKHMN 538 >UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKI2_9FIRM Length = 284 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 10/245 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRE---LPVCPSKLRIVDIDKKTCL 59 + F+L ++ ++ C + D+ Sbjct: 40 ECEIIYVRSGYFELFLDGHTHRIDAGCCSLIIGGSMHGGTPKDNCRYDCLVFDMAALLKS 99 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 S ++ + + + + P ++ + + + + + +L Sbjct: 100 SQICTLHLQPIINHERRFITFFSADSEPAKDAKAVIDAMLEKEPGYEFTVPGRLLCMLGH 159 Query: 120 FKKRESVNSFILTNINTFTC-----KITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 R+ T + + I N + L+++A + + + + Sbjct: 160 IVARQEHYQSGETAASDIKKVRRFKNVISYIEQNYRKNITLEELANECGMNRNYFCRAFK 219 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + G + E L R+ A +LI S + +A KCG+N SYFI FK GVTP Y Sbjct: 220 EYTGKTPVEYLNYFRIESACELIASTDEKLIDIAMKCGFNDYSYFIKVFKSMKGVTPRDY 279 Query: 234 -FEKI 237 Sbjct: 280 CRRSF 284 >UniRef50_C7RDA0 Transcriptional regulator, AraC family n=2 Tax=Anaerococcus RepID=C7RDA0_ANAPD Length = 287 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 8/245 (3%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 ++ + S I I KKN L I++ I L V + + + Sbjct: 42 PFIYFYFIVEGSGTFFIENDSIKIKKNDLVIINSNIGHNLYVDEDEYAVKTLGFGLESIG 101 Query: 62 FIDVNNELPGKFTLDKNGYI-----AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 +E+ + L+ + + +E + + + ++ L + L Sbjct: 102 LTSHLDEVQSEEELELDNFFHITWENKEAKINEIFTKIVNEFHSENLYAKTLADALASYF 161 Query: 117 LAMFKK--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 L F + R + NIN I I N L+ ++ + Y ++ + + Sbjct: 162 LINFLRHFRNEIEVVPDININRRIDYIKSYIDNNYSLDLSLEGLSNMAYMNKFHLIAEFK 221 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 + E L R+ +K L+ S ++S+ +A+ G+NS SYF F+ G+TPS + Sbjct: 222 QSYRVTPIEYLILKRIEVSKGLLISTNHSMETIAEIVGFNSQSYFNQVFRKKVGITPSQF 281 Query: 234 FEKII 238 +K Sbjct: 282 RKKHR 286 >UniRef50_C0EBM6 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBM6_9CLOT Length = 383 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 84/258 (32%), Gaps = 27/258 (10%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDI--------- 53 Y FK+ ++ ++ ++ +L + + I Sbjct: 120 YFVITYVFRGECYCYFGGEEFHFKQGDIWFLNTQVSHKLLLPGDDCVVFHICLRQTSFCS 179 Query: 54 --------DKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 +++ F + +E +I E +F + E HS Sbjct: 180 VLLDKIKNNEQFVHFFVNSIFDE--DNNPCLMQFHIRELSVAQYYLFKMLEEYYDQKMHS 237 Query: 106 LWLKERLCISLLAMFKKR------ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIA 159 + L LL ++ E N ++ + + ++ L+ A Sbjct: 238 QEVIAYLFCCLLIQLERNCEAEAVEQEAHRNGRQKNLDISEVIAYLMEH-QQTVTLQQAA 296 Query: 160 ELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF 218 + + + + ++ G +F E L R+ A +++ + + I ++ GY+ S F Sbjct: 297 SHFHYVPAYLSRFIQRHTGKTFLEFLNGIRLERAAEMLRNTTLPIRQISHMVGYSDRSSF 356 Query: 219 ICAFKDYYGVTPSHYFEK 236 +FK Y +TP Y + Sbjct: 357 DRSFKRQYHMTPRKYRDN 374 >UniRef50_C0EIK7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIK7_9CLOT Length = 343 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 18/259 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK--TCL 59 D+ F + + I K+N+L ++S + + + +I K Sbjct: 80 DFFEMSYVYKGQFYNRVENQDIEQKENTLVLLSPRAVHSCYIREKTDIVFNILIKRSLVE 139 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI--------------KIADSHS 105 F+ + +E + + LVF E + K+ + Sbjct: 140 KIFLRMFSEESAVSRFFLDSIYNIHQKKPYLVFHCNEELVSLVHGIIREHFDQKLFSQNM 199 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + K S L+ + L ++ +I I N L +AE S Sbjct: 200 IIAKLIELFSELSRLFQITLQGESPLPETSSNISEILDYIENNYSS-VTLTSVAEHFNYS 258 Query: 166 ESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 S + + ++ SF I+ + ++ A + ++++ + V + GY+ S+F FK Sbjct: 259 PSYVSRIIKTHLNQSFASIVHNKKLENACRYLSASDLPVEQVIEIVGYSDVSHFYKIFKQ 318 Query: 225 YYGVTPSHYFEKIIGVTDG 243 YG++P Y + + G Sbjct: 319 KYGLSPRQYRTQSNKLGAG 337 >UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 Tax=Rhodopirellula baltica RepID=Q7UYE3_RHOBA Length = 290 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 83/254 (32%), Gaps = 20/254 (7%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI----------VD 52 + V+ I F++ + I + Sbjct: 39 FAEIVIITGGKGVHITGEDSYELVTGDTFVIGGDRPHDYLNMDQLSLINILFDPLELPLS 98 Query: 53 IDKKTCLSFFIDVNNELP-----GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 I LS + + P +FT AE L V SL + +K + Sbjct: 99 IGDLQSLSGYHALFTLEPAWRKRHQFTSRLQLNPAELIETLRYVESLDQELKQRSAGFRT 158 Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 + + L+ + + + I + +R L D+ E+ S Sbjct: 159 MATLTMLQLVTFLSRCYIRTRNPESKKLLRIAEAISHIQRHFDRPISLDDLVEISGMSRR 218 Query: 168 LIKKRLRDEGT---SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + EGT S + L R++ A +L+ S SI +A G++ ++YF F+ Sbjct: 219 NFIRTF--EGTMETSPIKYLIQVRIQEASRLLRSTDRSITDIAFDVGFSDSNYFSRQFRT 276 Query: 225 YYGVTPSHYFEKII 238 + G++P Y +++ Sbjct: 277 HLGLSPREYRKQMR 290 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%) Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DE 176 + + ++ N K I + L+++AE + S K + Sbjct: 391 QLQHMVHYIQAWRHQQANGKIGKAKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRF 450 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 G +F + + + R+ AKK + + S+ + GYN +YF FK + G++P+ Y +K Sbjct: 451 GMTFIDYVTEVRIARAKKEMADPNKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKK 510 Query: 237 I 237 + Sbjct: 511 L 511 >UniRef50_C6D3L6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3L6_PAESJ Length = 305 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 22/265 (8%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDK------- 55 +V V S +FI+ + V S+ V Sbjct: 38 FVELVFIKQGSGLHEYEGNTFPITAGDVFIIEPGMDHAYTVEQSEGMEVVNVLFVPALLE 97 Query: 56 ----------KTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 ++++ F + ++ L + +S Sbjct: 98 RELAVLSGVTSFIDFYYMEPFLRSDVSFQAKLTLSPRQMMDIRGILEQLMKEYGNKESGY 157 Query: 106 LWLKERLCISLLAMFKKRESVNSFIL----TNINTFTCKITGIISFNIERQWHLKDIAEL 161 +L + I L + + + N N +I I + L+ I+++ Sbjct: 158 QFLIKSKLIELFIILSRIYANNRNHSLPSIQNDGEMIARICEFIKRHQAHPLSLEQISQM 217 Query: 162 IYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 S+S R G SF E D R++ AK+L+ ++S I +A GY S+F Sbjct: 218 AGMSQSKFTLLFRQMTGMSFVEFRNDQRIQLAKQLLAASSDKIARIALDTGYEDLSHFNH 277 Query: 221 AFKDYYGVTPSHYFEKIIGVTDGIN 245 FK G TPS Y +++ G ++ Sbjct: 278 VFKKLTGETPSLYRKRMKGRSESGE 302 >UniRef50_C0ECP2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECP2_9CLOT Length = 327 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 17/250 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTC---- 58 + V F +++ + ++ + +++ + +++I K Sbjct: 75 FFEFVYVYSGQFHSVVDSESLVLGQDQVILLNPNQVHAPYIERDSDLVLNILIKQPLIDR 134 Query: 59 ---------LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK 109 F N + G + ++ S+ E Sbjct: 135 TFASLISRDNILFDFFYNYIYGISGASNYLMVDRTPRVDQIISSIVEEYCERRPLFEQSL 194 Query: 110 ERLCISLLAMFKK--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 I+L + E + +I G I N L + A+ S S Sbjct: 195 IGWIINLFTELARVYSERKTNQPARPAKPGMAEIIGFIRENYAT-VTLSETAKTFSYSPS 253 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + ++ E G +F EI+RD R+ A + + ++ +++ G+ + Y FK Y Sbjct: 254 YLSYLIKKETGQTFKEIVRDFRIESACNFLKNTQLTLEQISEILGFQDSFYIAKVFKQRY 313 Query: 227 GVTPSHYFEK 236 G++PS Y ++ Sbjct: 314 GISPSEYRKR 323 >UniRef50_C5ET70 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET70_9FIRM Length = 273 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 86/249 (34%), Gaps = 13/249 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 Y I + + + + + K + +F Sbjct: 27 YFELYYLESGKRYHIADDTLYCLNSGEFILFPPYVMHHSYGDSG------VSFKRLVLYF 80 Query: 63 IDVNNELPG-KFTLDKNGYI---AEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 +PG LD++ ++ E+ +L+ +L + + D++S + I Sbjct: 81 TKEMIAVPGVTDVLDQHAWVYKSDEKNETHALLRALLKEQEFNDNYSE--EALYFILNQI 138 Query: 119 MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EG 177 + + + I + N L ++AE Y S + + + Sbjct: 139 LILLLRNSTETAKPEKQSRITSIIHYLHENYTYPITLNELAEQFYLSPYYLCREFKKYTN 198 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 ++ + + R+ +A++L S+ +++ G+++ ++F ++ G++PS ++ Sbjct: 199 STIVQYINSLRVGHAQRLFMETDKSVTEISKIVGFSNVTHFNRVYRSVTGLSPSKSRKQA 258 Query: 238 IGVTDGINK 246 + + + Sbjct: 259 KERSAAMER 267 >UniRef50_UPI0001BC4191 helix-turn-helix domain-containing protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC4191 Length = 306 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 10/248 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCP-SKLRIVDIDKKTCLSF 61 + + + + I + + KK ++ + + + + RI+ L Sbjct: 47 EIEIITIYKGTLYIEIENKKFTLKKGESLFINSEEMHFMRMDAREECRIISFVFDKVLIC 106 Query: 62 -----FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 ID +P + + EE L+ F + + ++ L L Sbjct: 107 GEKGSKIDQKYIIPLINCKELSALELTEEDSQKLIQGYFSYADEILGYEIVIRNVLSEIL 166 Query: 117 LAMFKKRESVNSFILTNINTFTCKIT---GIISFNIERQWHLKDIAELIYTSESLIKKRL 173 L + ++ + + + NT ++ I N L DIA+ + E + Sbjct: 167 LNIVRENQELLEKSNGSNNTDRERMKYMLTFIHKNYSEDISLGDIAKEAFIGEREALRCF 226 Query: 174 RDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 GTS E L+ R+ A +L+ + + + + G+NS SYF F G+TP Sbjct: 227 ARTIGTSPIEYLQKYRIYTAAELLRKSELPVTEICLQAGFNSPSYFSKVFCRMLGMTPRE 286 Query: 233 YFEKIIGV 240 Y + + + Sbjct: 287 YRKNKLNL 294 >UniRef50_A6LR84 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=A6LR84_CLOB8 Length = 285 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 89/244 (36%), Gaps = 13/244 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF- 61 ++ FI L N + + + + I++ + L + LR I F Sbjct: 40 HLQVFYFINGKGFLRCNTKSFNIIQGDVIIINSRDLHYLESLNNDLRFYLIRIDLPFLFS 99 Query: 62 -----FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 + + I ++ + + ++ + + + +L Sbjct: 100 DQVDLCQTKYLSPLSENLILFKNLIRNDDEIVRCIKTIIKEYNKKEIGYELAVKANLYNL 159 Query: 117 LAMFKKRESVNSFILT------NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 + + + N + K+ + N ++ +++ + + S Sbjct: 160 VVLLIRNYIDKFVTKRQLAFKINNDERFYKVFEFVHSNFNKKISTLNLSNIAHVSPYYFC 219 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G + TE + + R++ + +L+ +++ +I VA CG+N +YF FK YGV+ Sbjct: 220 RIFKQITGKTTTEYINEVRLKKSIELLKNSNMNITEVAINCGFNDVNYFSRLFKKKYGVS 279 Query: 230 PSHY 233 P+ + Sbjct: 280 PTKF 283 >UniRef50_UPI0001C35CCD helix-turn-helix domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35CCD Length = 287 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 84/244 (34%), Gaps = 10/244 (4%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 +D + + + ++ + N ++ + S+ Sbjct: 33 LDSFVLIYILKGTLNISQYGVQYRLEPNQFILLHAETEHYGWQESSEYLHYYWVHFHVPE 92 Query: 61 ---------FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 + +++ LP K+ + + G + + L L + S +L Sbjct: 93 PPVYINQTEYPSEISQALPEKYIVPETGTLTHGKRVPLLFSQLLDISMRRYPASEYLLHY 152 Query: 112 LCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKK 171 +LL S +I I N ++ + IAE+ + + + Sbjct: 153 SLTALLLELAGEFSSRLLAPKEDPLHIYRIQDWIRRNFQQAITVAQIAEIFHYNPDYLSS 212 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 + GT+ T+ + R+ AK L+TS +++ +A CG+ YF FK Y +TP Sbjct: 213 SYKKLTGTTLTQYINSVRIESAKNLLTSTDFTLKEIAFYCGFFDEKYFFKVFKQYEDMTP 272 Query: 231 SHYF 234 S + Sbjct: 273 SEFK 276 >UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=Clostridiales RepID=C4ZBG0_EUBR3 Length = 279 Score = 149 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 4/242 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D+ I +N V + F+V S Sbjct: 41 DHYLIHYIISGKGRYTVNGSVHTLTPGDAFLVYPNTEVIYQADAQDPWEYTWV-GFTGSD 99 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + ++ + +++ ++L + RL +L Sbjct: 100 AATILRATDFTKAHPYIHSVSNGNEIKRQLMHIYDARGTEFENALEMTGRLYTTLALFVS 159 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 + + + N++ K IS N ++DIA I S S + + + G S Sbjct: 160 --AATSKPPQNSANSYVQKGIEYISANYSYPITVEDIASYIGLSRSHLFRSFQSILGVSP 217 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 E L D R++ A L+ +S SI +A G++++ YF F G++P Y K Sbjct: 218 KEYLTDFRIKQACYLLKHSSLSITAIAGSIGFDNSLYFSKTFHKIKGLSPKEYRSKYKKA 277 Query: 241 TD 242 + Sbjct: 278 QE 279 >UniRef50_C0E8H9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8H9_9CLOT Length = 358 Score = 149 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 88/255 (34%), Gaps = 19/255 (7%) Query: 2 DYVCSVVFICQSFDLII-NRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCL- 59 D+ F N I ++SL +++ + +I + Sbjct: 98 DFYELAFVYRGKFINEFPNHDRIEIDESSLILLNPYAVHLPYTQTPDDIVFNILLRKSFV 157 Query: 60 ------------SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 FF + + G + + +L+ SL + + Sbjct: 158 ENKLVNMISDNKIFFNFFLDSIYGNEHITNFLVFKNNQEVSNLILSLIMELCDRQLYFEQ 217 Query: 108 LKERLCISL---LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYT 164 + ++L L ++E + N I I +N L ++AE Sbjct: 218 VVNSYLVALFAILVRIHQQEFSEAMDGLAKNRTIADILSYIRYNYSH-VSLAEVAEHFNY 276 Query: 165 SESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 S + + ++ E SF+EI+ + R+ A + +++ S + + GY+ TSYF AFK Sbjct: 277 SIGYMSRLIKQETSMSFSEIVSNYRLEIACNYLKNSNISTEKITEIIGYSDTSYFYKAFK 336 Query: 224 DYYGVTPSHYFEKII 238 G +P Y ++ Sbjct: 337 KQQGFSPIDYRKRFQ 351 >UniRef50_C3RI67 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RI67_9MOLU Length = 263 Score = 149 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + SF+L +N L +++ L + +I+ + T Sbjct: 37 DEIELIYCNQGSFELSVNGEKKFVNTKQLVLINSNSIHRLRFLEDQTKIITLLLST---- 92 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 ++ +E I ++E L+ L + + D +L + R+ + + Sbjct: 93 --ELFDEFKLVQCEFDLSLIKDQEQLEQLIIYLGDHL---DQETLVIHNRMMQIYELLLE 147 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGTSF 180 + I +I I + + + L +A + SE + + + G + Sbjct: 148 ECSVYKLAITKKKLPIIKQIVTYIEQHYDDELSLTILANHFHFSEVYLSRMFKEKTGITL 207 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 + R+ +A + + S +IN +A G+ + F FK+YY PS Y + Sbjct: 208 LSYINKIRLNHAYNDLMNTSLTINEIALNHGFKNVKAFNKIFKEYYHDIPSKYRK 262 >UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B4_EUBE2 Length = 291 Score = 149 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 16/249 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-----KLRIVDIDKKT 57 + + + ++ + +V + S + + ++D Sbjct: 43 EMELIYIKKGCMIVSVDLEYSVVNAGDIVVVMPGHIHSIIQNESDSCEYENILFNLDMLV 102 Query: 58 CLSFFIDVNNELPGK--FTLDKNGYIAEEEPPLSLVFSLFEGIKI-----ADSHSLWLKE 110 D + G F I++ P S + + D + L ++ Sbjct: 103 SRQCDYDTVSFFNGIAGFNGYCPPVISKTAPHYSDLIHYIDEADNICKYFPDGYRLKIRA 162 Query: 111 RLC---ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 L L A F + + + + I N R +++IA+ + S+S Sbjct: 163 CLFNFFFELNAHFYTHTDMPVHLSDDKMDKLKLVLNYIEKNFARAISIEEIAQWCHFSQS 222 Query: 168 LIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 K ++ GTSF L D R+ A +++ + + + +VA CG+++ SYF FK+ Y Sbjct: 223 HFMKFFKNCTGTSFITYLNDYRLIIAARILKTTTQPVIIVASDCGFDNISYFNRKFKEKY 282 Query: 227 GVTPSHYFE 235 GV+P + + Sbjct: 283 GVSPREFRK 291 >UniRef50_B0AA61 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AA61_9CLOT Length = 300 Score = 149 bits (377), Expect = 7e-35, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 16/250 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVD--------ID 54 + + S L ++ + ++ I + S+ I++ I Sbjct: 49 EIEVIRVKSGSIHLYLDNSDFVLNEGDGVFINSNILHYIRAGTSEECILNSLVFNKNLIS 108 Query: 55 KKTCLSFFIDVNNELPGKFTLDKNGYIAEE---EPPLSLVFSLFEGIKIADSHSLWLKER 111 F + N + L + E + + + F + ++ L Sbjct: 109 GGVQSVFEQNFVNPIVENKNLSGIAFYKNTSWGEEASACIKNAFSQFEKSEFGYEILVRE 168 Query: 112 LCISLLAMFKKRESVNSFILTNINTF----TCKITGIISFNIERQWHLKDIAELIYTSES 167 + + K + N N I + N +Q L DIA+++ SE Sbjct: 169 YLSHIWYIMLKNIQDLNLNKNNRNDLNSERIKNILSFVHKNYNKQITLNDIAKVVNLSER 228 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + ++ G S + + R+ A K++ N I +++ G++S SYF FK + Sbjct: 229 ECLRCFKNTLGISPIQYILKYRVSIATKMLRENKDPITIISDAVGFDSPSYFSKIFKRFI 288 Query: 227 GVTPSHYFEK 236 G+TP+ Y K Sbjct: 289 GITPTQYRNK 298 >UniRef50_UPI000178AA6A transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA6A Length = 285 Score = 149 bits (377), Expect = 7e-35, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 78/246 (31%), Gaps = 12/246 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 ++ + F+ L + K+ + +++ L + L Sbjct: 40 HLEILYFVSGEATLECGSTTFTAKEGDMIVINRNELHYGLSQSDHLFYYALIADFSLLQS 99 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPP-----LSLVFSLFEGIKIADSHSLWLKERLCISLL 117 ++ T + E L+ + S+ + ++ + + LL Sbjct: 100 HSLDAPEMKFITPITQNRLIFENRISGADALAPMLSIIKELERQEFGYELAIKSELYRLL 159 Query: 118 AMFKKRESVNSFILTNINTFTCK------ITGIISFNIERQWHLKDIAELIYTSESLIKK 171 + + I I + ++ ++ + S + Sbjct: 160 TLLLRGYVATVLTQDEYVERMKNVERFAPIFKYIEEHYREDLSVEQLSGMAGLSRFHFSR 219 Query: 172 RLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 ++ G + TE + +TR+ A L+ + +++ +A G+N YF FK Y + P Sbjct: 220 LFKEISGRTVTEYVNETRLNRADYLLRESPLTVSEIAAATGFNDIYYFSRTFKKYKRMAP 279 Query: 231 SHYFEK 236 S +K Sbjct: 280 SALRKK 285 >UniRef50_C6VNM4 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNM4_LACPJ Length = 341 Score = 149 bits (377), Expect = 8e-35, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 84/241 (34%), Gaps = 9/241 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + + + ++ ++ N L +++ + + + F+ Sbjct: 33 IELLWLLQGTVEVNVDGTRHQLHANDLILINANRGHATFALTPEC--IALRLHILPDFYT 90 Query: 64 DVNNELP------GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 + +L T ++ L+ ++ L +L L Sbjct: 91 NQGIDLSSGAFLLNSVTTPQHRDYQTIRQILAQLYLGLHQQDWPIFDLNALYFQLTNLLH 150 Query: 118 AMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE- 176 F ++ + ++ I+ +R L + A++ + S + + + + E Sbjct: 151 HDFFDTGITMTYPQPKTQSSLNRVIDYINQAYDRPITLNEAAKISHYSPAYLSRIFKAEL 210 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 G +F E L R+++A + + + + +A G+ F FK ++G TPS Y + Sbjct: 211 GLNFYEYLTRCRLQHAIYDLENPTTRVADLALANGFQEVKSFNLMFKKHFGQTPSSYRQH 270 Query: 237 I 237 + Sbjct: 271 L 271 >UniRef50_C9A6B7 Transcriptional regulator n=1 Tax=Enterococcus casseliflavus EC20 RepID=C9A6B7_ENTCA Length = 338 Score = 149 bits (377), Expect = 8e-35, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 93/258 (36%), Gaps = 24/258 (9%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 YV +V + +I + K+N L I+ + + + + +V++ K Sbjct: 74 YVEIIVPLVGECTVITKNDELKLKQNDLIIIGNHTIHRVEPIATDVIVVNLSLKDTAFNL 133 Query: 63 IDVNNELPGKFTLDKNGYIAE-------------------EEPPLSLVFSLFEGIKIADS 103 D + + T + + + + L+ + + D+ Sbjct: 134 NDYHFMYEDRATKNVSSLLFSLLSNEIQGENIYRLFRTHLDTKIHLLLEDIIQEYYYPDT 193 Query: 104 HSLWLKERLCISLLAMFKKRESVNSFILTNINT---FTCKITGIISFNIERQWHLKDIAE 160 S + ++L + + ++ + + I N L+++A+ Sbjct: 194 QSNQIIRLELLTLFGRLIRSAANEQTVIAGEDDGPVNLLSLLLYIEKNYAH-ITLEEMAQ 252 Query: 161 LIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFI 219 + + + L+ G +F +++ R+ A + +T + I +A K GY + SYF Sbjct: 253 HFGFNPNYLSSYLKKHTGLTFIKLVHLQRVNVAAEYLTYTNAPIEQIALKVGYENPSYFY 312 Query: 220 CAFKDYYGVTPSHYFEKI 237 F+ + + P+ Y EK Sbjct: 313 KMFRKHLKILPTEYREKH 330 >UniRef50_C2LSM7 Transcriptional regulator n=5 Tax=Streptococcus RepID=C2LSM7_STRSL Length = 313 Score = 149 bits (377), Expect = 8e-35, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 86/260 (33%), Gaps = 15/260 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS--------KLRIVDI 53 + + I+ + +F++ + + + + Sbjct: 54 PELEIQYVYGGTARYHIDYDYFDSQAGDIFLIRPNGLHSIHPVDNQPHHTDTLHFHLDML 113 Query: 54 DKKTCLSFFIDVNNELPGKFTLDKNGYIAEEE---PPLSLVFSLFEGIKIADSHSLWLKE 110 + + L K +E L+F +F+ I+ + H L + Sbjct: 114 GQSLVDPLSLRYLQPLQNSNFKFKQCLRPSDEGYTEIKDLLFKIFKMIRQKERHYELLLK 173 Query: 111 RLC---ISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 I LL ++ E S N +I I+ + ++ ++EL+ S++ Sbjct: 174 SKLEELIYLLYFYRLVERKTSDDHYRKNEKIREIIDYINQHYAENLTIEKLSELMGYSKT 233 Query: 168 LIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + GTS TE + R+ A + + ++ + +A G+N+ S F FK YY Sbjct: 234 HFMTIFKQHTGTSCTEFIIQARLNAACEELRNSVKPVLEIATTVGFNNLSNFNRQFKHYY 293 Query: 227 GVTPSHYFEKIIGVTDGINK 246 TPS Y + Sbjct: 294 DQTPSQYRKTHSNKKKTKKS 313 >UniRef50_C3QA40 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=C3QA40_9BACE Length = 288 Score = 149 bits (377), Expect = 8e-35, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 11/242 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRREL---PVCPSKLRIVDIDKKTCLS 60 + + + I+ V F L + + V + + + K Sbjct: 37 YEINLVMNTYGERIVGDSVEKFDNLDLVMTGPNLPHAWKGEIVEGNHVVTIQFSDKLLNF 96 Query: 61 FFID--VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 ++ + + + + G E L++ + + ++ H++ + L Sbjct: 97 PILEKRLFSPIKQLLLDSQKGISFSENTMLAMKEKILQLTRMQGFHTVLEFLSILYDLST 156 Query: 119 -----MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL 173 + I T+ + K+ I N E L D+A L+ SES Sbjct: 157 ADRHILVSNLYDTKDTIRTSKSRRIAKVCDYIEKNFEEPIKLGDVAALVNMSESAFSHFF 216 Query: 174 -RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 + +F + + + R+ A +++T S+++ + CG+N+ S FI FK G TPS Sbjct: 217 RKKTNCTFIDYINNLRVARACQMLTETSHTVAEICYSCGFNNLSNFIRIFKKKKGNTPSE 276 Query: 233 YF 234 Y Sbjct: 277 YR 278 >UniRef50_C0D4H9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4H9_9CLOT Length = 332 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 79/249 (31%), Gaps = 18/249 (7%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDI---------- 53 + V S ++ R I + + ++ I + + I+ I Sbjct: 78 IEFVYVYSGSCTQEVDGRPIQMNQGDICMLDTNIPHSIQSLGEQDIIITIEMRREYLTQG 137 Query: 54 ------DKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 D F I+ + E + ++ L E Sbjct: 138 FLFRLGDYGIINHFLINTLSLDAAHDQYLIFRKQEENQIHSTIQNILCEYYSPGFCSEKI 197 Query: 108 LKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 + + + + ++ + N +I G I + L+D AE + Sbjct: 198 IDAYMILLFCEILRQYKDQQLSYGKNDGRTIMEILGYIESHYLTA-TLQDTAEHFGFHPN 256 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + ++ G SF E++ RM A +++ I +A K GYN+ +F F+ Y Sbjct: 257 YLSNYIKKTVGHSFKELIIQQRMNQACFYLSNTDMPIYEIANKIGYNNLGFFYKKFESLY 316 Query: 227 GVTPSHYFE 235 + PS Y Sbjct: 317 KMPPSLYRR 325 >UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n=2 Tax=Oceanospirillaceae RepID=Q2BQ54_9GAMM Length = 304 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 3/238 (1%) Query: 6 SVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDV 65 + + + +I+ + + + ++ + K + Sbjct: 61 LIYCLDGEGEAVIDGQKTRIRSGDILLIPKGVSHTYQARKRKPWTIYWVHFHGHHAEDFA 120 Query: 66 NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIA--DSHSLWLKERLCISLLAMFKKR 123 + + + L+ F + + + ++ +L+ Sbjct: 121 QHLQQRESNQRRYVMPIGIHSRLASDFEALLEARESTYNLNAYICAANQLRQILSHIALL 180 Query: 124 ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTE 182 + + + ++ ++ +I Q L +AE I S+ K+ ++ GT+ Sbjct: 181 QPLAKQKQSRGGLDIERVHSLMQTHIHEQLDLDTLAESISLSKYHFVKKYKEVTGTTPIN 240 Query: 183 ILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 ++ A L+ + + IN VA GY YF FK GV+PS Y + G Sbjct: 241 HFIQLKIERACHLLDTTNNGINEVAFAVGYEDAYYFSRIFKKLMGVSPSQYRKMRTGA 298 >UniRef50_C2KWQ1 AraC family transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KWQ1_9FIRM Length = 311 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 74/234 (31%), Gaps = 11/234 (4%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP---VCPSKLRIVDIDKKTCLSFFID 64 V L +N K + F++ + P + + SFF + Sbjct: 64 VVYSGVGTLFVNGEYYHLSKGNAFLLYPHVEAWYEADLTEPWSYFWIGVRGVDADSFFTE 123 Query: 65 --VNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 + E P + + L E ++ L K+ Sbjct: 124 VGFSKEKPVGIVHQMDNLLLYINKILQKQDYTIEEQLSRSAYMHLFFANLLRG-----KQ 178 Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFT 181 E+ L ++ + + ++ + + + +A+ + + + + G S Sbjct: 179 EEAHWGGPLKDLGSHSARVRAYLDEHYHEDISISALAKEMGIHRAHLFNSFKKDTGYSPK 238 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 E L RM+ AK ++ SI +A GY+ F F+ GV+P Y Sbjct: 239 EYLLYIRMQNAKAMLRRTGKSIAEIAYMVGYHDPLSFSKIFRQKIGVSPLQYRN 292 >UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C7G8V4_9FIRM Length = 310 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 12/243 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV---DIDKKTCLS 60 + ++ + +D+ + + + + I+ L S R + D+ + Sbjct: 59 IEIILPVENHYDVEASGQAYHILPSEILIIPSGEMHALYAPESGKRFIFLFDVSSIAQMK 118 Query: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 + + + + + K Y L+ + ++ I+L Sbjct: 119 GYTSIQSLMTSCLHITKTTYPQIYNDVYQLLVQMRNEYFSSNEFRELAIYSHLINLFVSI 178 Query: 121 KKRESVNSFILTNINTFTCK--------ITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 + N + N + K + I + + L +IA+ S+ + Sbjct: 179 GRNRINNVDLFPNTRSHKQKEYLQKFNEVLDYIDSHYTEELTLDNIADFSGFSKYHFTRL 238 Query: 173 LRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + ++F + L R++ A++L+ + SI +A + G++S S F FK G TPS Sbjct: 239 FKQYTDSTFYDYLIYRRIKAAEELLANPELSITEIALQSGFSSISTFNRIFKQKKGCTPS 298 Query: 232 HYF 234 Y Sbjct: 299 EYR 301 >UniRef50_C9B1F2 Transcriptional regulator n=4 Tax=Enterococcus RepID=C9B1F2_ENTCA Length = 278 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 8/238 (3%) Query: 2 DYVCSVVFICQSFDLIINRRV-ISFKKNSLFIVSDKIRR-ELPVCPSKLRIVDIDKK-TC 58 D++ V + + + S+ + + + EL ++ + I K Sbjct: 33 DFLEISVLLEGESTYYFEKEPAKKIRAGSVMLFNPGVDHCELQPKGTRSHQLHIGLKNIS 92 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 L F + E LV E + + + +L Sbjct: 93 LEGFKRNFFPNKHPLLELGKYHHQVLEKAWQLVRESSEERDEFQLMQKAVLMEMLVYILR 152 Query: 119 MFKKRESVNSFILTNINTFTCKITGI----ISFNIERQWHLKDIAELIYTSESLIKKRLR 174 + L+ +I + + + + L+ +A+ + S + + K + Sbjct: 153 GLNEDHINVLPYLSKSQRRQQQIVNYTVYYLENHYKEEITLEKLAQDQFLSPTYLSKIFK 212 Query: 175 D-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G S L + R++ AK ++ + + +I VA GY +F +FK YGV+PS Sbjct: 213 EATGVSPINYLIEIRLKRAKDMLKNENLTIKEVASAVGYQDAYHFSKSFKKLYGVSPS 270 >UniRef50_C6D3A6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3A6_PAESJ Length = 291 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 27/250 (10%), Positives = 73/250 (29%), Gaps = 17/250 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF- 61 + + I + K + V+ S Sbjct: 38 HFELIYVESGEVLYTIGGQPFPTKPGDMLFVNSGELHSAASLNPNEPFTVYALVFNPSIL 97 Query: 62 -------------FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWL 108 + + + + + + Y ++ L L + + + Sbjct: 98 GLKEPHIVDLVAPYTNGMSMIASRIEQTDSLYPLLKQTTLRLAGEFEQKPRGYELAVRSY 157 Query: 109 KERLCISLLAMF--KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 + L L F +R ++ + ++ + ++ A ++ S Sbjct: 158 CQLLFTWLSREFTVMQRSDTEMNAFRARTNRFKELLTRLESDVAERVTVEQAASFVHMSP 217 Query: 167 SLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + + G +F + + R+ A+ L+ + + S+ +A + G +S + F F+ Sbjct: 218 YHFCRMFKKITGQTFVQYMNLNRINRAEYLLKNTAMSVTDIAAEIGCSSINSFSKLFRQL 277 Query: 226 YGVTPSHYFE 235 GV+P + Sbjct: 278 RGVSPRDLRK 287 >UniRef50_C0D4Y3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4Y3_9CLOT Length = 291 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 81/249 (32%), Gaps = 16/249 (6%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS--- 60 + S + F +F+ S + I+++ + Sbjct: 40 FEISCILSGSGLYKTQNALYHFHAGDIFLYSTNEIHYIIEIFDNCDILNLHFEPRFIWSP 99 Query: 61 ----FFIDVNNELPGKFTLDKNGYIAEEEP--PLSLVFSLFEGIKIADSHSLWLKERLCI 114 F N +N +E+ L+ + + + + + Sbjct: 100 GNDLFDSKYLNIFFNHGDSFENCLEQDEDTARIRQLLLEIEKEFNEKLPDYELMVKVKVL 159 Query: 115 SLLAMFKKR------ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 ++L + + S + K I NI L IA+ + S S Sbjct: 160 TILVTLGRNFNFSIPQKALSQSRSQHLLQLDKALAYIDDNISSDIDLNTIAKTAHMSRSY 219 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 ++ G + E + + R+ A +TS +SI +A KCG+N+T+ F AFK Sbjct: 220 FSTIFKEMNGLTPWEYIINKRVELAAHYLTSTDFSILDIACKCGFNNTANFNHAFKKVTR 279 Query: 228 VTPSHYFEK 236 +PS + + Sbjct: 280 KSPSDFRKS 288 >UniRef50_UPI0001788F57 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F57 Length = 292 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 81/251 (32%), Gaps = 20/251 (7%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + IIN + F++ + +++ + V ++FI Sbjct: 44 LEINYIKSGMGYYIINGQKFEFQQGDVLLINSNDLHCAYETKDLVMTV---ISFDSTWFI 100 Query: 64 DVNNELPGKFTLDKN------GYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLL 117 P F+ + I + P + + SL ++ + SLL Sbjct: 101 HNLRFDPELFSPFREMGKHYMNLIPRDHPAMGKLRSLLFELQEEHVGEQRSYATVVYSLL 160 Query: 118 AMFKK----------RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 F I ++ ++ N W L+++A L+Y S S Sbjct: 161 LQFLATVNRQCRIEGEGGSEPSISERQLEKMRQVIMVMEQNFAHPWTLEELASLVYLSPS 220 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + + G L R+ A ++ + VA +CG+ + + F FK + Sbjct: 221 RFSEIFKRAVGMPPLLYLIHIRLEQAVTMLEGGHMKVMDVALECGFRTLTNFNRLFKKHI 280 Query: 227 GVTPSHYFEKI 237 G+TP ++ Sbjct: 281 GMTPKASQKQH 291 >UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3B4_PAESJ Length = 300 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 5/237 (2%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + I SL + + + V + + Sbjct: 67 FQLIYITGGKGRFRFHNETIEVPSGSLVVYTPGQPQHYSYQAEDGTEV---YWIHFTGYS 123 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKR 123 + + + +L + + + + + +L + +R Sbjct: 124 AYDYLQQFGLLTQPVHTVGIIDDVTALFKKIIQELNSHRPLGSHMVNAYLLEMLTLLGRR 183 Query: 124 ESVNSFILTN-INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFT 181 + ++ I + D+A S + ++ G + Sbjct: 184 LQTAEEPGAQGRHPDINQMIAFIHEKYSESLSISDLAGECSLSVFRFIHKFKEVTGMTPM 243 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 + + + R+ AKKL++ +S + VA GY++ YF F+ G+ PS Y ++ Sbjct: 244 KYITEIRINEAKKLLSESSLHVKEVAAVVGYDNPLYFSRIFRSTVGIPPSEYKKQFQ 300 >UniRef50_C3RPM5 Transcriptional regulator n=3 Tax=Bacteria RepID=C3RPM5_9MOLU Length = 286 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 91/241 (37%), Gaps = 8/241 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + ++ + SF L IN + +++I++ + + + + + Sbjct: 47 IEILIPLYGSFILWINGNKVKIIAGNIYIINSQDIHAIQAIEGERIYKGYALQIKYDYLR 106 Query: 64 DVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF--- 120 + +++ + N I + ++ + + + D ++ + L+ + Sbjct: 107 ESYHDIDKIYFQQPNQQIN--KLLMAKIIDIINFYESDDPYNNIRVKSHIQMLVFLLLDN 164 Query: 121 --KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-G 177 KKR + KI + N + +K IA+ SE + K ++ G Sbjct: 165 LSKKRIGYLEVKDSKYKDRITKIIKYLENNYQEDLSVKMIADEFGLSEGYLSKLFKESLG 224 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + E L R+ +A++ + Y + +A G+ + F AFK +TP+ Y EK+ Sbjct: 225 ATVKEYLSRVRLWHAEEQLVETDYPVIDIAIGNGFPNVKSFNQAFKRKNVITPAKYREKM 284 Query: 238 I 238 Sbjct: 285 R 285 >UniRef50_C4FY13 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY13_9FIRM Length = 271 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 85/237 (35%), Gaps = 5/237 (2%) Query: 6 SVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDV 65 + KK + I++ L +I I F Sbjct: 36 IFYVNKGAGICHSEYEQHEIKKRDVIILNPGTTITLDPI---RKIDWICIALSGVVFTS- 91 Query: 66 NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRES 125 + E L + + + E + S + K C+ + + S Sbjct: 92 SQEANSSSQLFVASHPNPTLKYYLDLALIEESNRFRGSDLIMKKLIECVMIHLLRHNELS 151 Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEIL 184 + L + + I N ++ L+++++L+ ++ + + + G S + L Sbjct: 152 IKDASLQAKHNEIDVLQNYIRKNYSKKITLEELSDLVDINKYYLIRLFKQQTGLSPIDYL 211 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVT 241 R+ A+KL+ ++ +++ ++ + G++S S+F FK+ TPS Y ++ T Sbjct: 212 IHVRLEEAEKLLAKSNITVSDISDRVGFHSPSHFSKTFKENNHCTPSQYRKRYSANT 268 >UniRef50_B8I274 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I274_CLOCE Length = 276 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 84/242 (34%), Gaps = 6/242 (2%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLR----IVDIDKKTCL 59 + + ++ +N KK L + P + R +V ++ Sbjct: 30 LELLYVEDGEIEITVNGCTRLLKKGDLSVSFPNSVHSYNTPPHQERMNCIVVILNLILAG 89 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 F + P + + + ++ ++ + + + + + +++ Sbjct: 90 DFINTLLKFHPKVPFISSDNLHKDVPYAINTLYEEYNYAQ-SKPVYTPICKAYIQIIISR 148 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR-DEGT 178 ++ + + N I I+ N + L D++ + + + + Sbjct: 149 LLQQMELITNTDVNYFDIIFDIINYINENYMQPISLNDMSRALGVGKHYLSRVFSDKIKI 208 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 SF++ + R+ +A ++ + + +I +A CG+ S F AF V+PS + + + Sbjct: 209 SFSDYINGIRVSWACNMLLNTNKNITQIAYDCGFQSIRTFNRAFHKACHVSPSKFRKSQV 268 Query: 239 GV 240 Sbjct: 269 AA 270 >UniRef50_C4ZF37 L-rhamnose operon transcriptional activator n=4 Tax=Clostridiales RepID=C4ZF37_EUBR3 Length = 291 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 91/248 (36%), Gaps = 14/248 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + + ++ + SL ++ + + + + Sbjct: 42 DDMELIYIKKGCGHISVDFKEYHVTAPSLVLILPGQLHSIDQYMDESMEYENIIFSLSML 101 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI------------KIADSHSLWLK 109 + F + V+ +E + + + L++K Sbjct: 102 LPGKYDYTKEDFLTPLLAGRFTVPTVFTPVYPYYEDVVAPIDACDEICKTMPQGYQLYIK 161 Query: 110 ERLCISLLAMFKKRESVNSFILTNIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 +L + + ++ + + + + N + + DIA++ SES Sbjct: 162 SKLYEFFFVLDNRCRNLTKPLKSKKTLDKMKVVLKYVENNYADKISIADIADVAGFSESH 221 Query: 169 IKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + ++ GTSF + L+D R+ A +L+ S+ S+ ++ + G+ S SYF AFK +YG Sbjct: 222 FMRYFKETMGTSFVDYLKDYRLTMAARLLQSSDSSVLSISGEVGFESLSYFNRAFKKHYG 281 Query: 228 VTPSHYFE 235 +TP Y + Sbjct: 282 MTPLQYRK 289 >UniRef50_C7PB15 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PB15_CHIPD Length = 291 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 17/254 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRR------ELPVCPSKLRIVDIDK 55 V + + I+ + SF + + I +L+ + Sbjct: 34 PECELVFVMESNGKRIVGDSIESFDVGDMVFLGPHIPHVWYNDESYHKNNDQLKARSVVI 93 Query: 56 KTCLSFFIDVNNELPGK-----FTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE 110 F + LP + P ++ + + + Sbjct: 94 YFPKDIFGEKFYGLPETKSLTDLFHRAQRGMKILGPTYDMLKEQILSLPKKEGLERIISL 153 Query: 111 RLCISLLA-----MFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + +LA + + N ++ + N ++ L+D+A + S Sbjct: 154 LNILKILAETKDVQYLASTGYSHAFNAKDNHKIDEVFKYVMGNFSKEISLQDVASITNLS 213 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + ++ SF + L + R+ +A K +T +SI +A CG+ + S F FK+ Sbjct: 214 PQSFCRFFKNRTKKSFVQFLNEVRIGHACKRLTEEDWSIAEIAYSCGFKNLSNFNRFFKE 273 Query: 225 YYGVTPSHYFEKII 238 G TP Y ++ Sbjct: 274 IVGKTPKEYKNELR 287 >UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIX4_BACSK Length = 765 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 73/178 (41%), Gaps = 7/178 (3%) Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 F+ + N + + + P ++ I + W RL LL+ FK Sbjct: 592 FMRLLNRMLQLYQQSGLRHDQGVLLPEGTLYQECLTIPSQEQMKNWFVSRLIDPLLSAFK 651 Query: 122 KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSF 180 + + + K+ I + + L+ A ++ + + + ++ +F Sbjct: 652 Q------VSESQFQHLSEKMIDYIHQHYHQAVTLEQCAADLHYNANYLSSVFKEGTAMTF 705 Query: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 +E L R++ AK+ + S + +A+K GYN++ FI +FK G+TP Y ++ Sbjct: 706 SEYLAQYRLKKAKEWLAKTSEPVKTIAEKLGYNNSQNFIRSFKKMTGMTPGQYRQQKQ 763 >UniRef50_C1I2I2 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2I2_9CLOT Length = 295 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 18/253 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIV-------DID 54 D + + + S ++ I+ ++ S I+ + + + + Sbjct: 41 DEMEFIYILNGSAEICIDFKIFSVTTGDFIIIPNGSIHYMIGKENSKISYVALVFNLSLI 100 Query: 55 KKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW-----LK 109 + L + K L I + + + F I + ++ + +K Sbjct: 101 EGNTLDYSQINFVNPIMKNKLFFKNIIRTSNVGHAKIVNSFNNIIESYNNKSYGFQLEIK 160 Query: 110 ERLCISLLAMFKKRESVNSFILTNINTFTC-----KITGIISFNIERQWHLKDIAELIYT 164 L +FK+ + N + ++ I N + +K++A++ Sbjct: 161 GSLFSIFSTIFKEGYISLNLNSENYSDLIKVENLKEVIKYIQTNYKNPISIKELADIAQY 220 Query: 165 SESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 SE + + G + T+ + R++ A L+ + SI +A + G+ SYFI FK Sbjct: 221 SEYHFLRFFKAQTGKTCTQYINYFRIQKATLLLFDTNLSITEIAYEVGFGDVSYFIKTFK 280 Query: 224 DYYGVTPSHYFEK 236 + ++P+ Y + Sbjct: 281 KFLSISPTKYRKS 293 >UniRef50_C9Y024 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y024_CROTZ Length = 296 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 96/255 (37%), Gaps = 17/255 (6%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLR-----IVDIDKKTC 58 + + ++++ + + + LFI ++ V + ++ +D Sbjct: 45 LELLYVEEGYGVVMVDNQQYTMRPGRLFIFPPMTLHKVMVEERERERYRRTVIHLDNHAA 104 Query: 59 LSFFIDVNNELPGKFTLDKNG------YIAEEEPPLSLVFSLFEGIKIADSHSLWLKERL 112 L L G A+ L +F+L+ Sbjct: 105 LRLLAPFAQRYARLEALSLRGARATVVDFADIHAHLDHLFTLYAPRLAKGRSEHEEVASF 164 Query: 113 CISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 I LL++ + + N + ++ + N +++ L +A + S S + +R Sbjct: 165 LIHLLSLLPE---TPAPPPRASNALSTQVMFWVEENYAQKFSLGALALKLNRSRSYLSRR 221 Query: 173 LRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + E G + + L R+R A +L+ ++YS+ +A+ G++ T+YFI +F+ G TP Sbjct: 222 FQQETGEAIHDYLTTFRLRKACELLRHHAYSVADIARMTGFSDTTYFISSFRKRLGETPL 281 Query: 232 HYFE--KIIGVTDGI 244 Y + K G G Sbjct: 282 QYRKSRKHEGPHGGP 296 >UniRef50_C6PB97 Transcriptional regulator, AraC family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PB97_CLOTS Length = 251 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 19/234 (8%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCP-SKLRIVDIDKKTCLSFF 62 + + I ++ ++N L + E S + I + F+ Sbjct: 33 YELIYINNGRLSVSIGKKEYILEQNDLAFIFSNQMHEFKTIDFSDITITLFSPELIGDFY 92 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 ++ +P + L I + +S++ K+ S+ K Sbjct: 93 MNYKGMIPDDN-----------------ILHLDRYIDFNELNSIYSKKSFLYSICDKLVK 135 Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RDEGTSFT 181 ++S + K+ I N LK++AE + + K + +FT Sbjct: 136 QKSFIPVKQSAQTKVLYKMLLYIEQNYSNVCTLKNVAEHLNYDYPYLSKLFVQQMDMTFT 195 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 E L + R+ A ++ +++ SI +A CGYN+ F F+ ++P Y + Sbjct: 196 EYLNNYRISQACYMLKNSNLSIGEIASNCGYNNLRTFHRNFRRITNMSPKEYQK 249 >UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY53_9BACL Length = 545 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 123 RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFT 181 E T+ + I + + L D+A + S + K + +F Sbjct: 420 EEYGADRRETDSSQLIWHIVDYLDAHYFEDISLIDVATRFHLDPSYLSKLFKSVTSENFI 479 Query: 182 EILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVT 241 E + R+ A +L+ S+ I+ +++ GY + YF FK G TPS Y E Sbjct: 480 EYVTRKRIEKACELLRSSERKISEISELIGYENQRYFSQVFKKSTGQTPSEYREAQQSGK 539 Query: 242 DGINKT 247 G K Sbjct: 540 AGNPKN 545 >UniRef50_C6D4D7 Transcriptional regulator, AraC family n=3 Tax=Firmicutes RepID=C6D4D7_PAESJ Length = 289 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 79/253 (31%), Gaps = 19/253 (7%) Query: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 +D+ V+ + + I+N V KK +F++ P RI +I + + Sbjct: 34 VDFSELVIVLNGNATHIVNTEVSFIKKGDVFVIDGATSHAYK-DPHDFRICNIMYRPDIL 92 Query: 61 ----------------FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSH 104 F ++ F + I E SL + E Sbjct: 93 TSAGPDLRTSIGYQALFVLEPFYRNIQPFNSKLSLPIPSLEYVSSLAAFMIEEYTNKLQG 152 Query: 105 SLWLKERLCISLLAMFKKRESVNSFILTNINTF-TCKITGIISFNIERQWHLKDIAELIY 163 + + L+ ++ N + + + IA+ Sbjct: 153 YQTMLRSRFMELVVYLSRQYQNQDQQGIQGNLMHLANAISFMEDHYLEPLTREQIADKSG 212 Query: 164 TSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 S + + + T+ L R+ +A L+ + I V+ K G+N ++YF F Sbjct: 213 ISVRHLNRIFQSYYPTTPFAYLLRLRLEHACHLLKTTPVPITEVSYKSGFNDSNYFTRQF 272 Query: 223 KDYYGVTPSHYFE 235 YG+ P Y Sbjct: 273 TKVYGLAPKVYRR 285 >UniRef50_C6IZJ5 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZJ5_9BACL Length = 310 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 73/240 (30%), Gaps = 7/240 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + + + + + +N + ++ + I + I+ + K Sbjct: 68 AEIEFIYVLSGTIRIGVNEEIRLLRQGDMVICGSNDIHYFDSRELESEIIILICKPEWIT 127 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + E +++ L L + + L + Sbjct: 128 MTKSWPSDFRFASPYIPAGTPGLETVKTILDELIREKDEKKPGYPLLLKAGILKLCGSLQ 187 Query: 122 KR------ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 + + + +I I + + ++K +A+ S + + Sbjct: 188 RAVDTLPMDRTTKEKYESRRARMQQILSYIEDHYREELNVKVMAKRFSMEPSHFSRSFKA 247 Query: 176 E-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G +F L R+ A+ + ++ SI +A +CG++S F FK+ G PS Sbjct: 248 AIGMNFKTYLNTVRVLSAEHQLLTSDLSIMEIALECGFSSIRTFNRVFKELRGTVPSSLR 307 >UniRef50_UPI0001C3592F AraC-like transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3592F Length = 284 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 91/250 (36%), Gaps = 13/250 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP-VCPSKLRIVDIDKKTCLSFF 62 + + + D + R S + + IV+ + P++ ++ I +T + Sbjct: 38 IEIFLVMKGEIDFYLGERHFSIGEKNFIIVNSNEVHSIDAPLPNRTLVLQIPVQTFEVYL 97 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW----LKERLCISLLA 118 + + + E + LV ++ + L E + LL Sbjct: 98 QE------QPYLSFSRRSGEQNEKLMGLVMEMYRTYENKAYAWELKVSGLFEFVKYLLLT 151 Query: 119 MFKKRESVNSFILTNIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE- 176 FK + I I+ +IT + + + L+ +A+ S + + + + Sbjct: 152 EFKDQAQAPDIIRQKIHLEKLSEITEYMKNHYDEPLSLEKVADRFGFSPTYLSRIFKRYA 211 Query: 177 GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 S+ + L+D R+ YA K + + + +A G+ + F AF YG PS Y +K Sbjct: 212 NISYRDYLQDLRVEYAVKEMVHTDHELGDIAVNHGFADSRAFAKAFAKRYGCLPSEYRKK 271 Query: 237 IIGVTDGINK 246 + ++ Sbjct: 272 LKEERGESSE 281 >UniRef50_B6FJS0 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B6FJS0_9CLOT Length = 313 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 82/255 (32%), Gaps = 21/255 (8%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS- 60 D + + + R K+ ++ + + L Sbjct: 60 DEIQFTYVSKGELTMQVEGREYVLKEGEALFINSGLIHVTTSISEDGQYEGFMFPEKLLG 119 Query: 61 FFIDVNNELPGKFTLDKNGYI---------AEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 FF E K+ + AE+E LS + +L E ++ + + E Sbjct: 120 FFPGSRMEQNYVLPYLKSNVLSVCVLYRESAEDEKILSDIRNLRELFNNKENVTAFEYEV 179 Query: 112 LCISLLAMFKKRESVNSFILT------NINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 + +V+ + K+ I + LK+IAE S Sbjct: 180 AVRMTAIWLQIVRNVSDTMQKMPACYLQRQERMKKMMQYIVEHYHEAITLKEIAESASIS 239 Query: 166 ESLIKKRLR---DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 ++ + E + L R+ +L+ + I +A + G+N +SYFI AF Sbjct: 240 IEECRRCFKDIIKE--TPMHYLSSYRVMVGMELLRTTDLDITDIAFRVGFNDSSYFIQAF 297 Query: 223 KDYYGVTPSHYFEKI 237 K G+TP Y I Sbjct: 298 KKKNGMTPKQYRNHI 312 >UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIB0_9FIRM Length = 285 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 90/247 (36%), Gaps = 9/247 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI--VDIDKKTCLSF 61 + + + S + I ++ ++N L + K + + +DKK + Sbjct: 37 MEILFCLNGSVRIHIEHEHLTLQRNQLIVFDSKEVHSIHSDSKLYMFLCIHVDKKQLSVY 96 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLK----ERLCISLL 117 D+ + + + L + + + ++ ++ L ++ L Sbjct: 97 CPDLELYHIKCRPVSLDDSKSTPYIHLCQLAHDLTRTNVENKNTSAMRSDGTALLMLADL 156 Query: 118 AMFKKRESVNSFILT--NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 + S+ N KI ++ + + L+++A + S + + Sbjct: 157 IRYFSVYSLPGTTTGTGQSNDILRKIISYVNEHYTEKLSLEEVANQVGFSREYFCRFFKQ 216 Query: 176 E-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G +F L + R+ +A +++ + SI+ V Q+ G+ + + F FK+ YG+TP Sbjct: 217 HMGITFLRYLNEVRISHAGRILMNTDKSISEVMQESGFTNQTIFNRLFKEIYGMTPRQAR 276 Query: 235 EKIIGVT 241 T Sbjct: 277 NSYAENT 283 >UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=Enterobacteriaceae RepID=A4WEG5_ENT38 Length = 279 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 87/245 (35%), Gaps = 12/245 (4%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + I++ R + + LF ++ V + I ++T + Sbjct: 39 LEILYVEEGFGVAIVDNRHYTMRPGRLFFFPPFTLHKVMV---DEQAEAIYRRTIIHLDH 95 Query: 64 DVNNELPGKFTLDKNGYIAEEE-------PPLSLVFSLFEGIKIADSHSLWLKERLCISL 116 ++ F + ++ + + H E + + Sbjct: 96 HAVLKVLRDFPQTQQRLQKLSRRGGEAWVADMADCHPHIHHL-FSGYHPPLTSESVASLI 154 Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RD 175 +++F + + ++ + + ++++ L +A + S S + ++ + Sbjct: 155 ISLFAMLPDDKDGAPGSSHGIASQVMFWLDEHYQQKFSLDALAGELGKSRSYVSRKFHAE 214 Query: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G + L R+R A + + ++ S+ +A + G++ +YFI AFK G TP Y + Sbjct: 215 TGEKIHDYLNTLRLRKACECLLHSNESVRDIATRVGFSDVTYFISAFKKGIGETPLQYRK 274 Query: 236 KIIGV 240 G Sbjct: 275 NHPGA 279 >UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=Clostridium RepID=A5I5L7_CLOBH Length = 688 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 9/252 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRREL--PVCPSKLRIVDIDKKTCLSF 61 + + + S + I K + I++ + + +K+ I ID + Sbjct: 32 MEVIYVLEGSIKITIETESHRVNKQEIGIINPEEAHSIKSITNNNKVLIFQIDTSFFNKY 91 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + N F+ + + + + +L I + + E + + LL Sbjct: 92 YDIENMFFYTDFSAPEAQKHEKYDVLRKYLSTLLCEIAQKGDNYEDVVEEILVDLLYHLI 151 Query: 122 KR------ESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR- 174 + +I I N + ++DIA L + S + ++ Sbjct: 152 NNFHYLIYDEEELKENEVQFERYDRIIKYIYSNYNNKISIQDIARLEFLSSHYLSNEMKN 211 Query: 175 DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 G SF + + TR+ A KL+ +I+ ++++ G++ T YF FK +Y TP Y Sbjct: 212 KVGYSFNDFVNLTRVEEAIKLLLDTDKTISEISEELGFSHTRYFNKHFKKHYKCTPMQYR 271 Query: 235 EKIIGVTDGINK 246 +K + Sbjct: 272 KKYKVDEETYES 283 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Query: 126 VNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEIL 184 + + + + I+ N R L D++ + S K + E G +F E L Sbjct: 418 LENSKEKEAGSIIDRAKEYINENFRRDISLDDVSREVDISPYYFSKLFKQETGKNFIEYL 477 Query: 185 RDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 + R++ A++L+ + SI + + GY+ +YF FK Y GVTPS + E++ Sbjct: 478 TEIRLKNARELLQDSRLSIKEICAQSGYSDPNYFSRIFKKYEGVTPSEFRERL 530 >UniRef50_C6LL88 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL88_9FIRM Length = 303 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 90/252 (35%), Gaps = 24/252 (9%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + ++ + + + +I++++ ++ + IV+ + L P+ RI+ + + Sbjct: 39 IEILMPVTEIYGVIVDQKKYVLQEGDILIVNSGVPHALEAPPTGERII---LQFDPALLY 95 Query: 64 DVNNELPGKFTLDKNGYIAEEEPP------LSLVFSLFEGIKIADSHSLWLKERLCISLL 117 + YI E P + + + + + L I L Sbjct: 96 SLKEMETLLLLFPPVFYITPENEPDLYPLVKAKMEEIIREYDGQQAFAGALVYASLIELF 155 Query: 118 A---MFKKRESVNSFILT-----------NINTFTCKITGIISFNIERQWHLKDIAELIY 163 A + ++ L K I+ + + + L++ A+++ Sbjct: 156 AGVGRITRERNIEGTALHDMRRSKQDRQWEYQEVALKACNYINQHYQEKLTLEETAKMVG 215 Query: 164 TSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAF 222 S+ + + +F E L R++ A+ L+ S SI VA G++S S F F Sbjct: 216 FSKYHFTRVFKKYMNMTFYEYLNKKRVKCAEGLLYSTEMSITDVAMNSGFSSMSSFDRTF 275 Query: 223 KDYYGVTPSHYF 234 K +PS + Sbjct: 276 KALNKCSPSEFR 287 >UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIZ4_BACSK Length = 283 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 14/247 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + ++ + I+ + IV + K C S Sbjct: 37 WHEIIMVHQGTCTFFIDDCFFELASGDIVIVPGNSIHCSLLDKGKTVTTS-ALYFCPSLL 95 Query: 63 IDVNNELPGKFTL-------DKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCIS 115 + K E + + LF+ I + + Sbjct: 96 ASMIGSESDSLHSLFTTAKTTKQYRYYMEREKQAFLAGLFDEIAKETAIADLYSGETVAL 155 Query: 116 LLAMF-----KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L+ + + + + + + I ++ + LK +A S Sbjct: 156 LIRYAIVFVSRNCGTAQEKLSPLVPAWIKESLAYIDAHLHEELDLKMLAAHACVHPSYFS 215 Query: 171 KRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 K+ + G ++ E L+ R+ AK L+ + SI +A+ CGY+S +F F+ G T Sbjct: 216 KKFKASIGLTYIEFLKSKRLVKAKDLLKTTDLSIQAIAEACGYHSMPHFYRTFRAATGTT 275 Query: 230 PSHYFEK 236 P+ Y + Sbjct: 276 PAAYRKN 282 >UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDX0_9CLOT Length = 360 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 88/256 (34%), Gaps = 19/256 (7%) Query: 2 DYVCSVVFICQSFDLII-NRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 D+ + S ++ + ++ + +++ R +I + Sbjct: 100 DFFELLYVYRGSVVNVVHRQERVTVDSKHVLLMNPNSRHLPLCDELDTIAFNIMLRRSFI 159 Query: 61 F-------------FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLW 107 + + + G+ + ++ + + + S+ Sbjct: 160 EETVLNLIGGNNFVYHFFLHSIYGENEMRDYLFLPVNDEIVGHIHSIIREHCEEKPFYEQ 219 Query: 108 LKERLCISLLAMFKKRESVNSFILTNI---NTFTCKITGIISFNIERQWHLKDIAELIYT 164 + I LL F + + + + + + + I + L+ +AE Sbjct: 220 MLVSNLILLLGEFARIQKQETDLESERLVGSGKLTDMLRYIQLHYAT-VTLQSVAEHFSY 278 Query: 165 SESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFK 223 S++ + + ++ E G SF+EI+ R A + ++ +I ++ GY + F AFK Sbjct: 279 SDAYLSRLIKKETGKSFSEIVSGIRFHTACNYLKHSTLTIEKISDIVGYQNVGNFFRAFK 338 Query: 224 DYYGVTPSHYFEKIIG 239 GV+PS Y ++ Sbjct: 339 KNCGVSPSDYRKQNQA 354 >UniRef50_A6AXJ0 HTH-type transcriptional activator RhaS n=2 Tax=Vibrionaceae RepID=A6AXJ0_VIBPA Length = 278 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 4/236 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + ++ S +IN ++ KN + + + R + ++ ++ Sbjct: 34 AFEELMLVSGGSGTHVINDIPMNLSKNYVCFIKREDRHLFENVEGLHLSNVLFDQSKMAV 93 Query: 62 FIDVNNELPGKFTLDKNGYIAEE--EPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 + +P + +I ++ E L+ L I S + + L LL Sbjct: 94 DSSIAKYIPDTDQQSRGWFINDQSSETANRLITRLDSEIGTDTFESKIVCQSLFNLLLVE 153 Query: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGT 178 + + S + + G + N Q++L+D+AE S + K L G Sbjct: 154 LSRGR-IYSLEGESDEDKVLSVMGYLHQNYAEQFNLQDLAEQAGISTKQLSKILSRLTGM 212 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 S+ L RM A + + + SI +A GY ++YF FK + TP Sbjct: 213 SYPNYLNHIRMSKALEALKYSDRSITDIAFDVGYQDSNYFSSKFKKVFNATPREVR 268 >UniRef50_C6D359 Transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6D359_PAESJ Length = 309 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 73/254 (28%), Gaps = 18/254 (7%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + +V S I+ + V F Sbjct: 44 HFEIIVMQQGSAVFHIDSESYEAHPGDVLFVPAGALHVGYSLCEGDLSYLAIVYNSSLFQ 103 Query: 63 IDVNNELPGKFTLDK-----------NGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 + + L K+ L L+ K + + Sbjct: 104 NWMQDSLHTKYVLPYLEGRVQLPVKPTRLDPSCADYYYLLEQANSEFKAKQPAYQLMVKS 163 Query: 112 LCISLLAMFKKRESVNSFILTNINTFT------CKITGIISFNIERQWHLKDIAELIYTS 165 LL + ++ + N + + I N + + D A + + Sbjct: 164 QLHMLLTLLSRKFLPHQLPEQATNQYVHNREQFKALIEYIEANFADKQTVADAARRMNLN 223 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 K + G +F + + R+ A++L+ + SI +A G ++++YF +K Sbjct: 224 VHHFCKMFKKLTGRTFIDYVNVCRVNEAERLLLAGDLSITEIAGCVGCDNSNYFTKMYKK 283 Query: 225 YYGVTPSHYFEKII 238 Y GV PS +++ Sbjct: 284 YKGVAPSQLRKQLT 297 >UniRef50_A7B0C8 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0C8_RUMGN Length = 301 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 81/256 (31%), Gaps = 17/256 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKL-----RIVDIDKKT 57 N R KK SL +V + I+ IDK Sbjct: 34 EYEIYFLTEGERLFFFNNRAYQVKKGSLILVDTNLIHMTHAPEDDTTGYTRIILYIDKFK 93 Query: 58 CLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFE----GIKIADSHSLWLKERLC 113 F + F + G + ++E L E Sbjct: 94 MQQFDEKFPHLNLVPFFREHYGVYNLTQKQQEKFLHMYEVLKTEFSNRSRSYKALIEMEI 153 Query: 114 ISLLAMFKK-------RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSE 166 I F + + + ++ I IS + L +A + Y S+ Sbjct: 154 IHYFIDFIRDNPELTPIKDETAIHKSSKYQTIYNIADYISDHYAESISLDGLAGVFYLSK 213 Query: 167 SLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + + ++ G E + R + AK+L+ + S++ +A GY S +YF FK Y Sbjct: 214 FYLSRSFKEVTGYGVNEYVNILRTKRAKQLLEETTLSVSEIAGTVGYESITYFEKVFKTY 273 Query: 226 YGVTPSHYFEKIIGVT 241 ++P Y + + G+T Sbjct: 274 MSISPLKYRKTLNGIT 289 >UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS family) protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692C08 Length = 288 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 75/251 (29%), Gaps = 14/251 (5%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV---CPSKLRIVDIDKKTC 58 DY I + + + K F++ + P R V K Sbjct: 42 DYYLMHHVISGKGIFMYRGKELELKAGDTFLIEPEELVRYEADQVNPWMYRWVAFQGKGV 101 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLA 118 E G + + + + L ++ ++ + L Sbjct: 102 PEAL-----EKTGFSSSRCIVHTRDNQNVSELFSTILSVLQDKKEGAHQKALGYLYVLFG 156 Query: 119 MFKK----RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLR 174 + + + + K +S ++ +A+ + + + + + + Sbjct: 157 ELCEAIYPKTGIGMRTSSESGRTVQKAIHYLSTQYAEDISIETMADNLGYNRAYLSRIFK 216 Query: 175 DE-GTSFTEILRDTRMRYAKKLITSN-SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSH 232 E G + L R+ A+ L+ +I +A G++ YF FK +Y P+ Sbjct: 217 QETGLTPVTFLLKLRIDKARFLLRQRMELTIEQIASSVGFHDPLYFSKQFKRFYKCAPTE 276 Query: 233 YFEKIIGVTDG 243 Y + I + Sbjct: 277 YRDSIKHIRKE 287 >UniRef50_B9Y678 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y678_9FIRM Length = 299 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 84/246 (34%), Gaps = 8/246 (3%) Query: 6 SVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDV 65 + +I+ + I+ + ++ I+ D Sbjct: 49 VNYVVRGEALFLIDDQAFPVHAGHAVIIPPRGILTQANPKEEVETYFINFDVSNLTMRDE 108 Query: 66 NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK--- 122 ++ E + L +F+ S + + L SLL + Sbjct: 109 FMTRLLEWFPFYQVRDNERQILRYLFERIFDEAAQPQLGSSLIVQNLFCSLLIKMVRMAQ 168 Query: 123 ----RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EG 177 + L++ + + +I +K++A+ + SE + K ++ Sbjct: 169 QGEAVRDLQPVTLSSTRYLISRAVSYVYQHIGDHLTVKEVADSLNISEIYLYKLFKEHTS 228 Query: 178 TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKI 237 S + + R+ A++ +++ + I V+AQ+ G+ + YF F Y G +PS Y +++ Sbjct: 229 QSPQNFILEYRLHLAQEYLSNPDFPIKVIAQQLGFANADYFSACFHKYIGCSPSVYRQRL 288 Query: 238 IGVTDG 243 + Sbjct: 289 LSSNAT 294 >UniRef50_UPI0001C35241 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35241 Length = 275 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 79/250 (31%), Gaps = 16/250 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI---VDIDKKTCL 59 + + + I+ S +K L ++S I P K + + Sbjct: 15 EMEITLIKSGTIYYDIDFETFSVEKGDLLLISPHILHSAHEMPGKSMVSDSLVFHLDFLG 74 Query: 60 SF--------FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 F++ +F A E SL E + Sbjct: 75 YQVPDACTIKFLNPVQSGKLRFLPVVKPGAAGYEEMKECFISLLECFNGKQYGYELYTKE 134 Query: 112 LCISLLAMFKKRESVNSFILTN----INTFTCKITGIISFNIERQWHLKDIAELIYTSES 167 L + L + + V T+ ++ I N +++++ + + S++ Sbjct: 135 LLMRLFRLLYQYGCVAKHEGTHGEFGAEEKLKEVLSYIQSNYRETLTIEELSSVCHFSQT 194 Query: 168 LIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 + G + E + R+ A + + +A + G+ + SYF FK+ + Sbjct: 195 HFMNFFKRYAGMTCMEYINHYRITRAAADLVETERQVMDIAMENGFRNISYFNKVFKERF 254 Query: 227 GVTPSHYFEK 236 GVTP Y + Sbjct: 255 GVTPGSYRKN 264 >UniRef50_Q187Y6 AraC-family transcriptional regulator n=7 Tax=Clostridium RepID=Q187Y6_CLOD6 Length = 298 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 84/253 (33%), Gaps = 13/253 (5%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF- 61 ++ FI L ++ I + L L+ I + F Sbjct: 38 HLQIYYFIDGIAYLECGLDNFKVVPGNIVIANSNELHYLESLSDNLKFYSIRIEPTFLFS 97 Query: 62 -----FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIAD-----SHSLWLKER 111 + N I + L + ++ + + S + + Sbjct: 98 NQVDLLQTKYLAPLALNHIVFNNLIQNDSLILKCITTILDEYHNKEVGYELSIKANIYQL 157 Query: 112 LCISLLAMFKKRESVNSFILTNIN-TFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 + + L + K S + FI + I +I + LK++A + S Sbjct: 158 IVLLLRSHIDKIYSEDEFIKRKYSLEKFECIFDLIEEKYMDKITLKELASRVNLSAHHFC 217 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G + + + R+ A + ++ +A +CG++S +YF FK Y ++ Sbjct: 218 RTFKQITGKTTIDFINGIRLDKAIYYLKETDLNMTEIAMRCGFDSINYFSRLFKRNYNIS 277 Query: 230 PSHYFEKIIGVTD 242 P+ Y + V++ Sbjct: 278 PTKYRNEHREVSN 290 >UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SDU2_9STRE Length = 288 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 3/233 (1%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNN 67 + I+ K +FI+ + + S ++ + Sbjct: 56 FIVDGKGKFTIDGITTQLKTGDMFILPKGKV-AFYQADGEHPWTYLWVGFSGSKAENILS 114 Query: 68 ELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVN 127 + + + + + + F K+ D L L L L + K+ S Sbjct: 115 KTQLLDHYFCHSTLESKVLDQIVKLTQFRDQKLDDVTELQLTAELYKLLAFLMKEFPSKA 174 Query: 128 SFILT-NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILR 185 + I + ++ II + +IA+ + + S + K ++E S + L Sbjct: 175 MSDSSILIQNYIKQVKKIIHTQYGNPLKISEIAKKLNLNRSYLYKIFKEETDYSLKDYLI 234 Query: 186 DTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 RM + L+T ++ I+ +A G+ F AFK ++G +PSHY + + Sbjct: 235 QIRMEKSADLLTRTTFHISEIANAVGFPDALAFSKAFKKHFGQSPSHYRKALK 287 >UniRef50_C6PBN1 Transcriptional regulator, AraC family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBN1_CLOTS Length = 295 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 87/257 (33%), Gaps = 14/257 (5%) Query: 4 VCSVVFICQSFD-LIINRRVISFKKNSLFIVSDKIRRELPVCPSKLR---IVDIDKKTCL 59 + + D + I+ + ++ + +++ V K R I + Sbjct: 37 IEISYVLSGKIDDIYIDGIHYTSEQGDIVLINSNAIHSFSVVQGKNRKAVTFFISYEFLK 96 Query: 60 SFFIDVNNE--------LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 + + D++ + + + E + FS +A + L Sbjct: 97 TNYPDIDQIAFDCVSIDQNDEHKIKIFNELRENLDSIIRAFSNLRDDSLAHIKVIGLSYE 156 Query: 112 LCISLLAMFK-KRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L LL FK ++S +IT I N + + I+ S + Sbjct: 157 LIYLLLKNFKISKKSFGEIKTKKYLDRLTEITNYIKENYSQDLSIDIISAKFNLSPEYLS 216 Query: 171 KRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + + G + + R+ + + + + SI +A + G+ + F FK +Y +T Sbjct: 217 RFFKKYMGMTIHNYINTVRLEKSYRDLMNTDQSITEIALEHGFPNEKSFNKVFKTFYNIT 276 Query: 230 PSHYFEKIIGVTDGINK 246 P+ Y +KI + I Sbjct: 277 PNQYRKKIKALKSVIKT 293 >UniRef50_Q8YSB8 Transcriptional regulator n=2 Tax=Nostocaceae RepID=Q8YSB8_ANASP Length = 306 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 86/224 (38%), Gaps = 12/224 (5%) Query: 24 SFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNEL-PGKFTLDKNGYIA 82 + K + I+ + S+ + + + + +FF + E + K + A Sbjct: 85 NIAKGDVAII-PAQTHHISRWQSETKFLVLSVE--PAFFTRMVIEAGDLQKIEIKPRFAA 141 Query: 83 EEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTF----- 137 + + +L ++ S E L +L K V + + + Sbjct: 142 PDPLVQQIGLALQTELESEHKGSSIYIESLTTTLCIHLLKHYCVTGGTILDDHHHKGLSH 201 Query: 138 --TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTSFTEILRDTRMRYAKK 194 + I N+++ L DI+ + S ++ + G + + + + R+ AKK Sbjct: 202 WKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFKQSTGFAPHQYVMNCRIERAKK 261 Query: 195 LITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 L+ S + +I + + G+ S S+F F+ G+TP Y E++ Sbjct: 262 LLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVYREQVK 305 >UniRef50_C0EAQ5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAQ5_9CLOT Length = 329 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 97/254 (38%), Gaps = 21/254 (8%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK----- 56 DY V + + + + +++ + + + + +I Sbjct: 71 DYYEMVYVYRGGCVNNFRDQEVILSQGDVLLMNPNVLHSIHTLREEDCVFNIMLSRSLFE 130 Query: 57 -----------TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 +F + ++ E+ + ++E + S Sbjct: 131 ESMLLLLSDNKLLSNFIVSYLYQINTSQEFLYFPSPKNEQVDDIVTNLIYEFSDRGPTGS 190 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTC---KITGIISFNIERQWHLKDIAELI 162 + + L L ++ + + + I T+++T I I+ N R L + E Sbjct: 191 ASVVQHLLAVLFSLLARIYAEQNQIHTDMHTKLSPLLDIISYINQN-SRTVSLAVLEEKF 249 Query: 163 YTSESLIKKRLRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICA 221 S I + ++ G SFT+++++ +++ A++++ + S+ VA++ G+ + YF Sbjct: 250 SYSAGYISRLIKQHCGQSFTQLVQNAKLQRAREILKNTGTSVVQVAEEAGFQDSQYFSRL 309 Query: 222 FKDYYGVTPSHYFE 235 FK+ +G+TPS Y + Sbjct: 310 FKEKFGLTPSQYRK 323 >UniRef50_C0EDH7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDH7_9CLOT Length = 331 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 86/247 (34%), Gaps = 18/247 (7%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKK----- 56 DY + S + I+ + + +++ + + + +I Sbjct: 76 DYFELMYVRSGSCFNVFESEKITLHQGDILLLNPNAKHDPFTTSEGDCLFNIMLSRELFE 135 Query: 57 -----------TCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHS 105 +FF+D + + L + E I + Sbjct: 136 QSMLPLLSDNHLISNFFVDYMYHINKTQDYLYFPSRNTKAISPFLEEIILEYINKEQGYV 195 Query: 106 LWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTS 165 ++ L I + + N + N + ++ + L +A S Sbjct: 196 QVIESALVILFARLGRIFAQENHIESSVSNKLIVDVIVYLNQH-SADVTLSSLAAEFGYS 254 Query: 166 ESLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + K + + G SFT+IL + ++ AK L+ + ++S + +AQ G++ SY +F+ Sbjct: 255 SGYLSKLIRKHTGQSFTDILSNFKLEKAKHLLETTAHSTDEIAQLTGFHDASYLSRSFRS 314 Query: 225 YYGVTPS 231 YGVTPS Sbjct: 315 KYGVTPS 321 >UniRef50_C3RN82 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RN82_9MOLU Length = 267 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 2/232 (0%) Query: 8 VFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNN 67 + + +N +V K F++ + + + Sbjct: 22 YCLSGQGEYHVNNQVYQIKAGDAFLIMPNVVTYYQADQHEPWTYLWISFDGSKTRQYLKR 81 Query: 68 ELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVN 127 + L + E ++ + ++ + + S LA + N Sbjct: 82 CNLDEHNLVVHCDYINELRETTIAILAHNKLSYSNELFIQGQLYTFFSFLAK-SANITYN 140 Query: 128 SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GTSFTEILRD 186 + N N + K I N + + +IA+ + + S + + S E L Sbjct: 141 DNVAPNYNPYVDKAIEYIQNNYQEMVTVNEIADYLSLNRSYLTTLFKKHLHLSPQEFLLK 200 Query: 187 TRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 RM A+ L+T+ +IN +A CGY++ F AF + + + P Y ++ Sbjct: 201 YRMMRAEDLLTNTDLTINQIAFSCGYSNQLSFSKAFSNSHQMAPRDYRKQFK 252 >UniRef50_Q9KBM0 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9KBM0_BACHD Length = 299 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 75/248 (30%), Gaps = 15/248 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSK-----------LRIV 51 + + + I ++ + + + K I Sbjct: 40 EMEWIYMEAGEAEFQIGTKMTTVRAGEGLFIPSGHLHGAYPVSDKPFSLYATVVHPDFIS 99 Query: 52 DIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER 111 S +ID + + L+++ + + + + + Sbjct: 100 SFGYDLIQSRYIDPFKDSERTGPIKLCPTHYWMSDMLTMLQATISQFQQKEEGYELVIKA 159 Query: 112 LCISLLAMFKK---RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 + ++A K R K+ I + + + +K +A L+ SE Sbjct: 160 NLLQMMAELVKHFPRTEEQKTGTPQQIRQIKKVLQFIDEHYDEKLTIKQLANLVQMSEGH 219 Query: 169 IKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + + + E + R+ A +L+ +I ++ G++ SYFI FK + Sbjct: 220 FSRFFKSIVRMTAVEYIHTQRLNKAARLLRETDRTIMDISMSVGFDHPSYFIKLFKRHKR 279 Query: 228 VTPSHYFE 235 TPS + Sbjct: 280 CTPSEFRR 287 >UniRef50_C4Z0X2 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z0X2_EUBE2 Length = 249 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 94/241 (39%), Gaps = 13/241 (5%) Query: 9 FICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS---KLRIVDIDKKTCLSFFIDV 65 + + + I+ R+ + + ++ + + ++ K + + Sbjct: 1 MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFSKDYIETISQTL 60 Query: 66 NNELPGKFTLDKNGYIAEE--EPPLSLVFSLFEGIKIADSHSL----WLKERLCISLLAM 119 YI +E E L + + I D +S L + L I+L+ + Sbjct: 61 GKNWAEHNLWGHILYIEKEKREKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIRL 120 Query: 120 FKKRESVNSFILTNINTFTCKIT---GIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 + + + FI + N + I+ N + LKD+A + + S + + Sbjct: 121 DRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLKDVASHLNLNPSYFSSKFKAF 180 Query: 177 G-TSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 F E LR+ R+ +A+ + S++ +A +CG+ +++YF FK G++PS + + Sbjct: 181 NNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFRK 240 Query: 236 K 236 Sbjct: 241 N 241 >UniRef50_C6D019 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D019_PAESJ Length = 289 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 18/250 (7%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP--VCPSKLRIVDIDKKTCLSF 61 I R L ++ + P+ RIV + Sbjct: 38 YELYYLFSGERQYFIKDRKYPIAAGDLVLIPANELHKTSDTGVPNHARIVLYYNEKYFEQ 97 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI-----KIADSHSLWLKERLCISL 116 + +EL L L G+ + H + ++ + +L Sbjct: 98 YGKEESELLLSPFLGSRRVFRLAHQERLRFEQLLYGLLQEVQERPPGHEMPIRHAVAEAL 157 Query: 117 LAMFKKRESVNSFILTNINTF--------TCKITGIISFNIERQWHLKDIAELIYTSESL 168 L F R ++++ + + +I ++ + L ++ + S S Sbjct: 158 L--FAARHAIHNKPDPSDGSVPPSPAAAKAMEIASYVADHFREPLTLDSLSRQFHLSTSY 215 Query: 169 IKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + + + G TE + TR++ A+ + I +A + G+ S S F FK + Sbjct: 216 LSRTFKKYTGFGLTEYIGITRVKEAQHQLRETDERITEIAAEVGFESLSQFERVFKTHIR 275 Query: 228 VTPSHYFEKI 237 ++P Y + Sbjct: 276 LSPRDYRNQY 285 >UniRef50_C0EHT5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHT5_9CLOT Length = 318 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELP-VCPSKLRIVDIDK----- 55 D+ V D +I+ + +S K + +++ L P I +I Sbjct: 62 DFFEMVYVHEGYCDNMIDNKKVSLTKGDICLINTYAVHTLLCDDPDNAVIFNIMIGAEMM 121 Query: 56 -----------KTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGI--KIAD 102 FF + +E +L L D Sbjct: 122 NAAHFRLLSYNDFVADFFFHSLEKQRDDDNYLIFHQSEKENAANNLCVQLINEYYGHEED 181 Query: 103 SHSLWLKERLCISLLAMFKK--RESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAE 160 + L +L + ++ + + + + I + LK IA+ Sbjct: 182 LYQESKILHLFDCILIELTRSYQKMKDHPLGKKDSLKVSDMIYYIENHY-NSVTLKSIAD 240 Query: 161 LIYTSESLIKKRL-RDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFI 219 + + + G +FT++L D RMR AK+L+ +NS SI + + GY++ +F Sbjct: 241 YFGYHPKHFSRIIHQATGQTFTDLLLDLRMRCAKELLQNNSLSITEIMHQVGYHNYKWFS 300 Query: 220 CAFKDYYGVTPSHYF 234 F+ + ++P Y Sbjct: 301 NQFQKKFDMSPKKYR 315 >UniRef50_C0ECP0 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECP0_9CLOT Length = 355 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 82/261 (31%), Gaps = 18/261 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDID------- 54 D+ + + I + +++ + ++ Sbjct: 96 DFFEFNYVYRGKVSNCLENKPIVQTNRQILLMNPYAVHNPQPIDEDTVLFNLLVDRSWAE 155 Query: 55 ------KKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWL 108 FF + + G + + + + + + Sbjct: 156 NVFASLLSFDHGFFNFFLDSIYGLNRMAPYLILDNTPELTRIFHQMIAEYFEEKACYQQI 215 Query: 109 KERLCISLLAMFKKRESVNSFILTN---INTFTCKITGIISFNIERQWHLKDIAELIYTS 165 I L A+ +++ + I I N R+ L AE + Sbjct: 216 LFSKLIELFAILSRQQDDSRRKKDLEFLQQRDVADILNYIKVNY-REISLAKAAEFFNYT 274 Query: 166 ESLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKD 224 + + K ++ G F++IL++ ++ A +T +S SI + + GY+ SYF F Sbjct: 275 PNYLSKIIKRHTGRYFSDILQEYKLESACNYLTHSSLSIEKINEIIGYSDASYFSKVFSK 334 Query: 225 YYGVTPSHYFEKIIGVTDGIN 245 YG++P+ Y ++ + + Sbjct: 335 RYGLSPNQYRQQHTNLYESKQ 355 >UniRef50_C4G7L2 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7L2_ABIDE Length = 272 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 84/241 (34%), Gaps = 16/241 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 + + + + + KK +V+ D+K L + Sbjct: 40 PFTELFLVTGGVGEFYVENNIYPLKKGDFILVNPNASHTEKS----------DEKNPLEY 89 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER-----LCISL 116 + T + +++ + + + + + I + Sbjct: 90 IAVAVDNFSLNLTDTNHLMFNCISKNPNIIKYMDSMLAEQEGNKAYSDHICQNILEIILI 149 Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE 176 + + +++ N + K+ + N + + D+A+L ++ + Sbjct: 150 EILRITKSDIDTEPTVNASKECFKLKKYMDSNYASKITIDDLAKLSNLNKYYLIHSFNKY 209 Query: 177 -GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G+S L R+R AK+L+ ++ YSI+ ++Q G++S SYF F G++P Y Sbjct: 210 FGSSPINYLCGIRIRAAKELLENSDYSISQISQSTGFSSQSYFTQCFIKSCGLSPKAYRN 269 Query: 236 K 236 + Sbjct: 270 R 270 >UniRef50_Q184W8 AraC-family transcriptional regulator n=5 Tax=Clostridium difficile RepID=Q184W8_CLOD6 Length = 295 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 95/259 (36%), Gaps = 16/259 (6%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRI---VDIDKKTCL 59 + ++ +L IN + + KK + I+ + P R+ DI L Sbjct: 34 EIEILLITEGVVNLFINDKPMQLKKGEIVIIKGGDIHYILPSPGSERLVFQFDISFFNDL 93 Query: 60 SFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLF-----EGIKIADSHSLWLKERLCI 114 + L F+ K VF + E + + +S +K ++ Sbjct: 94 ILLNEEKESLINLFSSIKKCSRDWSAKIRKSVFDILIDIYNEDLYKIEGYSYAIKGKMYN 153 Query: 115 SLLAMFKKRESVNSFILTNINTFTCKITG-------IISFNIERQWHLKDIAELIYTSES 167 + ++++ + +I + N ++ L+D++ + S Sbjct: 154 LIPILYRQIPREIEENTVEYEINSKEILERLNNIFKYVEKNYKQPIKLEDVSYEVGFSVY 213 Query: 168 LIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYY 226 K + G +F L + R+ AK ++ +N+ SI + ++ G+ ST F FK+ Sbjct: 214 YFTKFFKKNTGKTFITFLNEYRLEKAKWILLNNNISIVDLVEEVGFGSTKTFYRVFKEKI 273 Query: 227 GVTPSHYFEKIIGVTDGIN 245 GV+P + ++ + + Sbjct: 274 GVSPLEFKKRYNSLEKKGS 292 >UniRef50_C4Z9T9 Ada regulatory protein/6-O-methylguanine-DNA methyltransferase n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9T9_EUBR3 Length = 276 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 9/239 (3%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 + + ++I + NSL ++ ++ P + L Sbjct: 41 FTEIFFIKDGTGRMLIENESLPVSSNSLVVIGAQVTHTEFSDPENPLDYYVLGVEGLKLN 100 Query: 63 IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 D E + +I + ++ + + + L+ F + Sbjct: 101 TDKEPEYIHVPASANSPFIRQ------CFENILREMHNKQDRYAEICQHYLDILILYFCR 154 Query: 123 RESVNSFILTNINTFTC--KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTS 179 ++ V+ ++ N+ K+ I N + L +AE S+ + R + G S Sbjct: 155 KDHVSYEVVDAQNSSRECHKVKRFIEHNYQSMISLDSLAENCSLSKYYLSHRFAELYGKS 214 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKII 238 L + R+ A+ L+ + ++SI +A G++STSYF +F+ + +P + + Sbjct: 215 PIAYLNEVRLASARDLLLTTNHSIEEIAGCIGFSSTSYFSQSFQKNFHESPQQFRKSHR 273 >UniRef50_UPI0001788D00 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788D00 Length = 291 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 16/254 (6%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D V I +++ K+ LFI+ P + + Sbjct: 36 DLYELVYVYQGKGTFFIENKLMEKKEGDLFIIPGNTIHSSFPDPDQPIVSSALFFAPSLV 95 Query: 62 F-----------IDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKE 110 + + + + ++ + E I++A Sbjct: 96 LGANGSDLQYSVLSCFEYAQKTGSYRHQLPESNQAYIEDMLKGISEEIRLAQLGFREALV 155 Query: 111 RLCISLLAMFKKRESVNSFILTNINTF----TCKITGIISFNIERQWHLKDIAELIYTSE 166 SLL + S S T + I ++++ L ++ Sbjct: 156 LQLRSLLLHINRYISTLSAEQTAHSQIGPAWLMDSIQWIHEHLDQPIGLAALSAQAAVDP 215 Query: 167 SLIKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDY 225 + + + G T + R+ AK+L+ ++ S+ +A+ CGY + ++F FK Sbjct: 216 AHFSRMFKKYTGLHVTGYMHAKRIARAKELLRNHEASVGQIAEICGYATLTHFHRNFKKL 275 Query: 226 YGVTPSHYFEKIIG 239 G+TP Y + + Sbjct: 276 TGMTPGAYRRQAVS 289 >UniRef50_C4GA22 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GA22_9FIRM Length = 279 Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 4/247 (1%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 Y ++ ++ + + + I Sbjct: 33 TYYELYYLEEGCRLHAVSDQIYRTEAGEMILFPPYSMHHSYAPSEDQAFQRIVVYFTEKA 92 Query: 62 FIDV-NNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 D+ E + L+ + D E + ++L + Sbjct: 93 IGDLTLIEKMRHAGGLYHPDRRMSHQIHGLLGMMLMEQSETDDLHDITMETILRAILLLL 152 Query: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTS 179 K V + T + K+ IS + L ++A Y S+ + + + + Sbjct: 153 LK--DVRTLNPTVNKSRVIKVIEYISDHYMEDLRLDELAGRFYVSQYYLCREFKKYTSRT 210 Query: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 + + TR+ A++ I ++ + VA CG+ S+++F F+ G+TP+ + + Sbjct: 211 INQYINTTRILNAQREIMETNHPFSQVAANCGFASSTHFSRVFRSVTGMTPTAFRKSCSQ 270 Query: 240 VTDGINK 246 K Sbjct: 271 RQVTERK 277 >UniRef50_C9L4N0 Putative transcriptional regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L4N0_RUMHA Length = 275 Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 74/238 (31%), Gaps = 7/238 (2%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSF 61 D + + F S+ L +N ++ + + + + + L F Sbjct: 41 DEMEILYFSKGSYTLFVNMEQFQIEEKCFYFIYPGELHAIVPHSDSTESALVFHPSLLGF 100 Query: 62 FIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFK 121 + + N + E VF +F + + + + Sbjct: 101 EYKLFPQC----LKPSNPAFSPFEKEYRKVFHIFHQFPEDSLSARLFIQSGIFKMAGILS 156 Query: 122 KRESVNSFILTNINTF--TCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDE-GT 178 S+ + + + + +++D+A + +E + + G Sbjct: 157 TFPSLLQTERKTDMRIETIKTALDFLHSHYQEKLYIRDLALQVNMNEQYFCRFFKKVLGK 216 Query: 179 SFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 S L + R++ A L+ + I V CG+ F+ FK Y TP Y +K Sbjct: 217 SPITYLNEYRIKQACILLQTTDLPIMEVGMDCGFFHLGNFMKEFKKYTETTPLQYRKK 274 >UniRef50_A6LE78 Putative transcriptional regulator n=6 Tax=Bacteroidales RepID=A6LE78_PARD8 Length = 294 Score = 146 bits (368), Expect = 7e-34, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 15/254 (5%) Query: 3 YVCSVVFICQSFDLII-NRRVISFKKNSLFIVSDKIRRELPVCPSKLR-IVDIDKKTCLS 60 + + I V L +++ + I +I + S Sbjct: 38 EFELNYLENAAGAIRIVGDSVEEIDDLDLVLIAGGTKHAYSNHKCPCNGIFEITIQFHKS 97 Query: 61 FFIDVNNE-----LPGKFTLDKNGYIAEEEPPLSL--VFSLFEGIKIADSHSLWLKERLC 113 F + N + F +G + E L + + DS L+ Sbjct: 98 LFDSLINRRHFKTMKDMFDNASSGLVFSREMILGIQDKLRMLSNDNKPDSFKNLLRLVEI 157 Query: 114 ISLLAMFKKRESVN-----SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESL 168 + +L++ K +N N I + N +++ L ++A+L S++ Sbjct: 158 LKILSLDKAARRLNAVNTVKNYNNNDTDRLDSIMLYLHENYQKRITLSEVAKLTNMSDAS 217 Query: 169 IKKRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYG 227 + + L+ G +F + L + R+ A +T S SI+ + +CG+N+ S F FK G Sbjct: 218 LMRFLKKWTGKTFIDNLNEIRVAEAVCRLTDTSDSISEICYRCGFNNLSNFNRVFKRRRG 277 Query: 228 VTPSHYFEKIIGVT 241 TP+ Y EK Sbjct: 278 STPTEYREKYSRSR 291 >UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7W7_9FIRM Length = 334 Score = 146 bits (368), Expect = 7e-34, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 92/254 (36%), Gaps = 19/254 (7%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 + + I+++ S + I S+L + K + Sbjct: 84 YQLLYVKHGTIYYYIDKKQYSISAGGILIYKP----------SELLHYEFFLKDAPDIYW 133 Query: 64 ------DVNNELPGKFTLDKNGYIAEEEPPLSLVF-SLFEGIKIADSHSLWLKERLCISL 116 +V+N L K+ ++ P +F + + H + + L + L Sbjct: 134 VHFTGDNVDNILGELNLSTKHAFMGTICPEYDTIFDKIISELLNRKLHFMDISSILMLEL 193 Query: 117 LAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRL-RD 175 L + ++I + + K+ I + N + + IA+ + S S + K + Sbjct: 194 LYTISRDICTITYISSKNDLILEKVLEIFNTNYPNKISITSIAKELNYSSSWLSKTFTKH 253 Query: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFE 235 G S L + R+ AK ++ S SI VA++ G+ YF F + G+TPS Y + Sbjct: 254 FGLSPKAYLTNLRIEKAKSMLLST-MSIRQVAEQTGFPDQMYFSRVFTNAEGITPSQYRQ 312 Query: 236 KIIGVTDGINKTID 249 K + + D Sbjct: 313 KHLDASFVSTTKKD 326 >UniRef50_D2MNX8 Transcriptional regulator, AraC family n=1 Tax=Bulleidia extructa W1219 RepID=D2MNX8_9FIRM Length = 282 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 14/247 (5%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPV-----CPSKLRIVDIDKKTC 58 + + + ++ + L I++ + C K+ I D D Sbjct: 30 FEFIEILEGEYQCHVSGKTFLAHPGDLCIINRSRIHRILNQKKERCRKKVLIFDPDYFIH 89 Query: 59 LSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCI---- 114 + + T + + + + + L + I +S E I Sbjct: 90 NPEIYQKYVKPLQEETAFSHMQLKFKSGMGAELIHLIDEIDRLNSEKPVGYEMETIGLIY 149 Query: 115 ----SLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 L ++E + +T K+T I + L+ IA+ S+S Sbjct: 150 LLLRRLYLAHHQQEKLLQENYDLNSTIQRKMTLYIYEHYAEHLTLEKIAQAGLVSKSTCI 209 Query: 171 KRLRD-EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVT 229 + ++ G S + L R+ + +L+ ++ SI +A +CG++ SYF FK YG + Sbjct: 210 RLFKEYTGKSPIDFLNRYRLEVSSQLLKNSHRSITDIAFECGFSQASYFNRQFKKEYGSS 269 Query: 230 PSHYFEK 236 P+ Y ++ Sbjct: 270 PNQYRQQ 276 >UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=C7G788_9FIRM Length = 292 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 86/242 (35%), Gaps = 20/242 (8%) Query: 6 SVVFICQSFDLII-----NRRVI--SFKKNSLFIVSDK---IRRELPVCPSKLRIVDIDK 55 V + S ++ +I + F + P +L + + Sbjct: 59 FFVVLSGSGEVTYREPLSEGGMISSTAHAGDCFFLDCSGEYTHISTDEDPWELLWIHFNG 118 Query: 56 KTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCIS 115 +++ + F + ++ + S+ + + L + I Sbjct: 119 PEARAYYTYFRDHHNWHFRSAHFTEL------INAIESIIRYNEEPTDDTDLLTAQQIIH 172 Query: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 +L + + + +L++ I + + L +AE + S+ + + + Sbjct: 173 ILTLICTESNEKNELLSDK---LKTILHYLDEHYTENISLDQLAEQFFISKYYLSREFKK 229 Query: 176 E-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYF 234 E GT+ + + R+ AK+L+ ++ SI +A CG + SYF F+ G T S Y Sbjct: 230 EFGTTVIQYVLAKRINNAKELLRYSNSSIEEIAHLCGIDDASYFNKVFRKMEGCTASEYR 289 Query: 235 EK 236 ++ Sbjct: 290 KR 291 >UniRef50_Q5FIG2 Transcriptional regulator-type n=4 Tax=Lactobacillus acidophilus RepID=Q5FIG2_LACAC Length = 359 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 26/262 (9%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFF 62 YV +V + S + I+ +N + I+ K ++ K ++ I K Sbjct: 98 YVEMMVVLSGSCVIKTANEAITLNENEIIIIGCKTIHKVEPIDDKTIMIKIALKRAAFSL 157 Query: 63 IDVNNELPGKFTLDKNGYIA------------------EEEPPLSLVFSLFEGIKIADSH 104 D+ + + + ++ ++++ D + Sbjct: 158 EDLVFLTHSHNAQSVSSIVFSLLSSDDSHGAFNVFRTHHDVHVVNKIYNIISEYYCPDDY 217 Query: 105 SLWLKERLCISLLAMFKKRE------SVNSFILTNINTFTCKITGIISFNIERQWHLKDI 158 S + + + L + + N + I N + +LK + Sbjct: 218 SNQIIKLEILELFIRLIRIASKDAVFQTQKEVQNNNEIDLLTLLLYIERNY-KTINLKSM 276 Query: 159 AELIYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSY 217 A+ + + + LR G +F +++ R+ A + + + + ++ GY + SY Sbjct: 277 AKYFNFNPNYLSSILREKTGYTFIKLVHLQRINVAAEYLALTNTPVEGISLAVGYENPSY 336 Query: 218 FICAFKDYYGVTPSHYFEKIIG 239 F FK Y G +P Y +K I Sbjct: 337 FYKMFKKYMGCSPKEYRQKQIA 358 >UniRef50_B7MQA3 Putative AraC-type DNA-binding domain-containing protein n=12 Tax=Enterobacteriaceae RepID=B7MQA3_ECO81 Length = 289 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 8/242 (3%) Query: 4 VCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFI 63 V ++ + I R+ +K L I + ++ + S I I Sbjct: 40 VELILITEGDGEYFIGDRIYPVRKGDLVIYNSQVVHD-EYLESGRPIGTICCGINNISCP 98 Query: 64 DVN-NELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKK 122 + N L + L+ S+F I + + L +L + Sbjct: 99 GLRENALIPDDIVPVIPLYHHYATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEG 158 Query: 123 RESVN--SFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD-EGTS 179 + + + I I N L +A S + + G S Sbjct: 159 NVLLRTGNDAIQRHENLLDSIKSYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYS 218 Query: 180 FTEILRDTRMRYAKKLITS---NSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 + L R+ A+ L+T+ I +A + G+++ S+F FK+ G TP Y + Sbjct: 219 PMDYLIKRRLGEAQSLLTTDKGGREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKD 278 Query: 237 II 238 Sbjct: 279 YR 280 >UniRef50_A6BF68 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BF68_9FIRM Length = 348 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 90/255 (35%), Gaps = 23/255 (9%) Query: 2 DYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRE-----------LPVCPSKLRI 50 DY+ + F I + + F+K L ++ + + + Sbjct: 93 DYLELSYVVEGEFHQRILNKDVVFQKGDLCLIDKNCLHQDCLTDQSGVVLFIGIANDMFT 152 Query: 51 VDIDKKTCLSFFIDVNNELP------GKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSH 104 +++ + + +F + A E SL+ L E DS Sbjct: 153 EIMNENSTPQKILSFLQSALLKQKDVQQFLHFRPSDGASESLDDSLLLLLKESYS-PDSG 211 Query: 105 SLWLKERLCISLLAMFKKRESVNSFILTNIN---TFTCKITGIISFNIERQWHLKDIAEL 161 S ++ + L + + + + +I+ I + R ++D+ + Sbjct: 212 SRYITKGLLFRIFRILSTQYDFSLSKEQKQTMNWIVFEEISDYIRAHF-RDITIQDLVDE 270 Query: 162 IYTSESLIKKRLR-DEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFIC 220 + E + ++ G +++ ++ R+ A+ L+ S SI +A GY++ YF Sbjct: 271 FHYQEDYFNRLIKRKTGLTYSAYVQQIRLERAEHLLVSTDKSIEEIADSVGYHNKGYFYK 330 Query: 221 AFKDYYGVTPSHYFE 235 F++ Y TP+ Y Sbjct: 331 LFQEKYEETPASYRR 345 >UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ18_9CLOT Length = 280 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 80/247 (32%), Gaps = 11/247 (4%) Query: 3 YVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPS-KLRIVDIDKKTCLSF 61 ++ + +N + I+ L KL V +D + Sbjct: 33 HMELDYCSEGHCTIKVNGESYDCQPGDFVIIHTMEDHTLIRNSDCKLLGVQMDLSVLDTA 92 Query: 62 FIDVN-NELPGKFTLDKNGYIAEEEPP-----LSLVFSLFEGIKIADSHSLWLKERLCIS 115 F ++ F Y P S++ + + + + Sbjct: 93 FSPFYESQYLVPFIRGSGKYQRRIRVPKGSLLESILSEILVEYQKKQPGYEMYIKGDILR 152 Query: 116 LLAMFKKRESVNSFILT---NINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKR 172 L + + + + + + +IE + + A++ S + Sbjct: 153 LFSCLVRTKVIEIGERNVNFQDLERIKPVIDYMEQHIETELSVAAAAKIACMSYYHFCRL 212 Query: 173 LRDE-GTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPS 231 + G +F E R+R A+KL+ + +I +A + G+ S +YF FK G P+ Sbjct: 213 FKKVIGKTFVEYQNFIRIRRAEKLLITTDRTITNIAFETGFGSVAYFNRVFKKETGQAPA 272 Query: 232 HYFEKII 238 +Y +K+ Sbjct: 273 NYRKKMR 279 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.158 0.462 Lambda K H 0.267 0.0481 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,587,381,939 Number of Sequences: 3077464 Number of extensions: 91441471 Number of successful extensions: 408734 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 17130 Number of HSP's successfully gapped in prelim test: 2880 Number of HSP's that attempted gapping in prelim test: 359822 Number of HSP's gapped (non-prelim): 23853 length of query: 249 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 124 effective length of database: 655,713,356 effective search space: 81308456144 effective search space used: 81308456144 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 92 (39.8 bits)