BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (610 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q47Z18 UvrABC system protein C n=274 Tax=Gammaproteobac... 677 0.0 UniRef50_Q0A8X6 UvrABC system protein C n=19 Tax=Gammaproteobact... 622 e-176 UniRef50_C7RAS4 Excinuclease ABC, C subunit n=1 Tax=Kangiella ko... 605 e-171 UniRef50_Q820N6 UvrABC system protein C n=2 Tax=Proteobacteria R... 603 e-171 UniRef50_B6IZT9 UvrABC system protein C n=6 Tax=Coxiella burneti... 589 e-166 UniRef50_B2I637 UvrABC system protein C n=15 Tax=Xanthomonadacea... 586 e-165 UniRef50_Q2SF17 UvrABC system protein C n=47 Tax=Proteobacteria ... 585 e-165 UniRef50_B2FK26 UvrABC system protein C n=29 Tax=Proteobacteria ... 577 e-163 UniRef50_Q47EE8 UvrABC system protein C n=6 Tax=Proteobacteria R... 572 e-161 UniRef50_Q31GI3 UvrABC system protein C n=2 Tax=Bacteria RepID=U... 567 e-160 UniRef50_Q5F928 UvrABC system protein C n=29 Tax=Betaproteobacte... 565 e-159 UniRef50_Q5X1P5 UvrABC system protein C n=7 Tax=Gammaproteobacte... 560 e-158 UniRef50_A5WBX3 UvrABC system protein C n=3 Tax=Psychrobacter Re... 554 e-156 UniRef50_C6MYN0 Excinuclease ABC subunit n=1 Tax=Legionella dran... 553 e-156 UniRef50_D1RJY2 Excinuclease ABC subunit C n=1 Tax=Legionella lo... 551 e-155 UniRef50_A5EW70 UvrABC system protein C n=1 Tax=Dichelobacter no... 546 e-153 UniRef50_A6SXR9 UvrABC system protein C n=19 Tax=Betaproteobacte... 545 e-153 UniRef50_B5EPN1 Excinuclease ABC, C subunit n=2 Tax=Acidithiobac... 536 e-150 UniRef50_A1AWP2 Excinuclease ABC subunit C n=1 Tax=Candidatus Ru... 534 e-150 UniRef50_B0VLX1 UvrABC system protein C n=17 Tax=Moraxellaceae R... 533 e-150 UniRef50_C6NXT8 Excinuclease ABC subunit C n=2 Tax=Gammaproteoba... 533 e-149 UniRef50_Q1LKN9 UvrABC system protein C n=32 Tax=Proteobacteria ... 524 e-147 UniRef50_UPI0000E87CD9 excinuclease ABC, C subunit n=1 Tax=Methy... 518 e-145 UniRef50_A0Q5Q7 UvrABC system protein C n=18 Tax=Francisella Rep... 511 e-143 UniRef50_A0L8U4 Excinuclease ABC subunit C n=1 Tax=Magnetococcus... 466 e-129 UniRef50_A1WLD5 UvrABC system protein C n=17 Tax=Burkholderiales... 459 e-127 UniRef50_B4RF25 UvrC, excinuclease ABC, C subunit n=1 Tax=Phenyl... 455 e-126 UniRef50_B6INU7 Excinuclease ABC, C subunit, putative n=18 Tax=c... 450 e-125 UniRef50_Q21AW5 UvrABC system protein C n=89 Tax=Alphaproteobact... 436 e-120 UniRef50_Q3IYX6 UvrABC system protein C n=23 Tax=Alphaproteobact... 436 e-120 UniRef50_Q2G9G8 UvrABC system protein C n=2 Tax=Sphingomonadales... 433 e-119 UniRef50_Q0BPX7 UvrABC system protein C n=43 Tax=Alphaproteobact... 431 e-119 UniRef50_Q2RS75 UvrABC system protein C n=13 Tax=Alphaproteobact... 429 e-118 UniRef50_D2RIL8 Excinuclease ABC, C subunit n=3 Tax=Veillonellac... 417 e-115 UniRef50_Q4FPI1 UvrABC system protein C n=3 Tax=Candidatus Pelag... 412 e-113 UniRef50_B9KY82 Excinuclease ABC, C subunit n=1 Tax=Thermomicrob... 411 e-113 UniRef50_Q1Q607 Similar to uvrABC system protein C (UvrC exinucl... 406 e-111 UniRef50_B8CYK1 Excinuclease ABC, C subunit n=1 Tax=Halothermoth... 402 e-110 UniRef50_B8FHR2 UvrABC system protein C n=1 Tax=Desulfatibacillu... 401 e-110 UniRef50_A9B4F8 Excinuclease ABC, C subunit n=1 Tax=Herpetosipho... 395 e-108 UniRef50_C9KP10 Excinuclease ABC subunit C n=1 Tax=Mitsuokella m... 394 e-108 UniRef50_A8ZVJ2 Excinuclease ABC, C subunit n=1 Tax=Desulfococcu... 394 e-108 UniRef50_D1BLY6 Excinuclease ABC, C subunit n=5 Tax=Veillonellac... 393 e-107 UniRef50_A3DJ07 UvrABC system protein C n=15 Tax=Bacteria RepID=... 393 e-107 UniRef50_B0S0L4 UvrABC system protein C n=2 Tax=Finegoldia magna... 391 e-107 UniRef50_B0K791 UvrABC system protein C n=11 Tax=Thermoanaerobac... 389 e-106 UniRef50_C9R9D0 Excinuclease ABC, C subunit n=1 Tax=Ammonifex de... 388 e-106 UniRef50_Q0F271 Excinuclease ABC subunit C n=1 Tax=Mariprofundus... 388 e-106 UniRef50_Q6AKB8 UvrABC system protein C n=3 Tax=Deltaproteobacte... 386 e-105 UniRef50_Q3AFE5 UvrABC system protein C n=1 Tax=Carboxydothermus... 383 e-105 UniRef50_D1R706 Putative uncharacterized protein n=1 Tax=Parachl... 382 e-104 UniRef50_C6XFB9 Excinuclease ABC subunit C n=1 Tax=Candidatus Li... 380 e-104 UniRef50_D0RRP8 Excinuclease ABC subunit C n=1 Tax=alpha proteob... 378 e-103 UniRef50_C8QX27 Excinuclease ABC, C subunit n=1 Tax=Desulfurivib... 378 e-103 UniRef50_C0QET6 UvrABC system protein C n=2 Tax=Desulfobacterace... 376 e-102 UniRef50_Q2GJJ1 UvrABC system protein C n=6 Tax=Anaplasma RepID=... 376 e-102 UniRef50_A5UY12 Excinuclease ABC subunit C n=5 Tax=Chloroflexace... 375 e-102 UniRef50_A0LHP7 Excinuclease ABC, C subunit n=1 Tax=Syntrophobac... 374 e-102 UniRef50_Q3ZYA3 UvrABC system protein C n=5 Tax=Dehalococcoides ... 371 e-101 UniRef50_D0LVJ3 Excinuclease ABC, C subunit n=1 Tax=Haliangium o... 369 e-100 UniRef50_B8I8F2 UvrABC system protein C n=2 Tax=Clostridium RepI... 369 e-100 UniRef50_Q2LR71 UvrABC system protein C n=1 Tax=Syntrophus acidi... 368 e-100 UniRef50_B7AWB5 Putative uncharacterized protein n=1 Tax=Bactero... 367 e-100 UniRef50_Q180Q8 UvrABC system protein C n=8 Tax=Clostridiales Re... 367 e-100 UniRef50_Q2NGT2 UvrABC system protein C n=4 Tax=Methanobacteriac... 367 e-100 UniRef50_Q1AUH1 UvrABC system protein C n=1 Tax=Rubrobacter xyla... 367 e-100 UniRef50_UPI0001C41B0D excinuclease ABC C subunit UvrC n=1 Tax=M... 367 e-100 UniRef50_A6BHR5 Putative uncharacterized protein n=1 Tax=Dorea l... 366 1e-99 UniRef50_Q12W02 UvrABC system protein C n=1 Tax=Methanococcoides... 365 2e-99 UniRef50_C9LR57 Excinuclease ABC subunit C n=1 Tax=Dialister inv... 365 3e-99 UniRef50_B2A711 Excinuclease ABC, C subunit n=2 Tax=Firmicutes R... 364 4e-99 UniRef50_C7LTD0 Excinuclease ABC, C subunit n=2 Tax=Desulfovibri... 364 5e-99 UniRef50_Q1IZB2 UvrABC system protein C n=4 Tax=Deinococcus RepI... 364 6e-99 UniRef50_Q6MKS2 UvrABC system protein C n=1 Tax=Bdellovibrio bac... 363 7e-99 UniRef50_C8X3R4 Excinuclease ABC, C subunit n=1 Tax=Desulfohalob... 363 1e-98 UniRef50_C7HUD8 UvrABC system, C protein n=2 Tax=Anaerococcus Re... 362 2e-98 UniRef50_C0GMH4 Excinuclease ABC, C subunit n=1 Tax=Desulfonatro... 362 3e-98 UniRef50_Q03F33 UvrABC system protein C n=7 Tax=Firmicutes RepID... 362 3e-98 UniRef50_Q6MDC8 UvrABC system protein C n=1 Tax=Candidatus Proto... 361 4e-98 UniRef50_Q0B0A0 UvrABC system protein C n=1 Tax=Syntrophomonas w... 361 6e-98 UniRef50_B5E2L2 UvrABC system protein C n=268 Tax=Bacilli RepID=... 360 6e-98 UniRef50_Q5GSR4 UvrABC system protein C n=10 Tax=Wolbachia RepID... 360 8e-98 UniRef50_A8GP33 UvrABC system protein C n=14 Tax=Rickettsia RepI... 359 2e-97 UniRef50_O26541 UvrABC system protein C n=1 Tax=Methanothermobac... 359 2e-97 UniRef50_B5YF86 UvrABC system protein C n=2 Tax=Dictyoglomus Rep... 358 3e-97 UniRef50_UPI0001C3237F excinuclease ABC, C subunit n=1 Tax=Conex... 358 4e-97 UniRef50_A1BED8 UvrABC system protein C n=12 Tax=cellular organi... 357 6e-97 UniRef50_B7K124 Excinuclease ABC, C subunit n=5 Tax=Cyanobacteri... 357 9e-97 UniRef50_Q24WC0 UvrABC system protein C n=16 Tax=Firmicutes RepI... 356 2e-96 UniRef50_A9KSS0 UvrABC system protein C n=59 Tax=Firmicutes RepI... 353 8e-96 UniRef50_D1CFI6 Excinuclease ABC, C subunit n=1 Tax=Thermobaculu... 353 1e-95 UniRef50_Q4JVI8 UvrABC system protein C n=8 Tax=Corynebacterium ... 353 1e-95 UniRef50_C6E9G2 UvrABC system protein C n=3 Tax=Geobacter RepID=... 352 2e-95 UniRef50_B6AR33 Excinuclease ABC, C subunit (UvrC) n=3 Tax=Lepto... 352 3e-95 UniRef50_Q6SI31 Excinuclease ABC, C subunit n=1 Tax=uncultured m... 351 5e-95 UniRef50_Q3M542 UvrABC system protein C n=11 Tax=Cyanobacteria R... 350 7e-95 UniRef50_UPI000050F72E excinuclease ABC subunit C n=1 Tax=Brevib... 348 5e-94 UniRef50_UPI00017881F9 excinuclease ABC, C subunit n=1 Tax=Geoba... 347 8e-94 UniRef50_Q1MQH2 UvrABC system protein C n=3 Tax=Desulfovibrionac... 344 5e-93 UniRef50_Q04EZ7 UvrABC system protein C n=42 Tax=Lactobacillales... 344 7e-93 UniRef50_A0QWV6 UvrABC system protein C n=27 Tax=Actinomycetales... 343 1e-92 UniRef50_C7RHW1 Excinuclease ABC, C subunit n=4 Tax=Clostridiale... 342 2e-92 UniRef50_Q01S04 UvrABC system protein C n=2 Tax=Acidobacteria Re... 342 4e-92 UniRef50_A4XIQ3 UvrABC system protein C n=2 Tax=Clostridia RepID... 341 4e-92 UniRef50_B0VH58 Excinuclease ABC, C subunit n=1 Tax=Candidatus C... 341 4e-92 UniRef50_C0ZZE8 UvrABC system protein C n=14 Tax=Actinomycetales... 341 6e-92 UniRef50_B9M422 UvrABC system protein C n=8 Tax=Desulfuromonadal... 339 2e-91 UniRef50_C4FUE0 Putative uncharacterized protein n=1 Tax=Catonel... 338 2e-91 UniRef50_B5YHU3 Excinuclease ABC, C subunit n=1 Tax=Thermodesulf... 338 3e-91 UniRef50_C7MCN8 Excinuclease ABC subunit C n=1 Tax=Brachybacteri... 338 4e-91 UniRef50_C1FMJ8 UvrABC system protein C n=14 Tax=Clostridium Rep... 338 4e-91 UniRef50_Q1D921 UvrABC system protein C n=2 Tax=Cystobacterineae... 338 4e-91 UniRef50_C1A8T0 UvrABC system protein C n=1 Tax=Gemmatimonas aur... 337 6e-91 UniRef50_B3QRR8 Excinuclease ABC, C subunit n=3 Tax=Bacteria Rep... 337 7e-91 UniRef50_A5FM03 UvrABC system protein C n=25 Tax=Bacteroidetes R... 336 1e-90 UniRef50_A1ZTX2 Excinuclease ABC, C subunit n=4 Tax=Bacteroidete... 335 3e-90 UniRef50_Q2JCI3 UvrABC system protein C n=12 Tax=Actinomycetales... 335 3e-90 UniRef50_C7H041 Excinuclease ABC subunit C n=1 Tax=Eubacterium s... 333 1e-89 UniRef50_B3WE47 UvrABC system protein C n=33 Tax=Bacilli RepID=U... 333 2e-89 UniRef50_D2ML33 Excinuclease ABC, C subunit n=1 Tax=Candidatus P... 333 2e-89 UniRef50_A7HD93 UvrABC system protein C n=5 Tax=Bacteria RepID=U... 332 4e-89 UniRef50_B3EU62 Excinuclease ABC, C subunit n=2 Tax=Candidatus A... 331 4e-89 UniRef50_A2RLW6 UvrABC system protein C n=11 Tax=Bacilli RepID=U... 330 8e-89 UniRef50_C5BV40 UvrABC system protein C n=16 Tax=Actinomycetales... 329 2e-88 UniRef50_B1CBT5 Putative uncharacterized protein n=1 Tax=Anaerof... 327 6e-88 UniRef50_UPI00016BFB47 excinuclease ABC, C subunit n=1 Tax=Epulo... 325 2e-87 UniRef50_C7N5B1 Excinuclease ABC, C subunit n=6 Tax=Coriobacteri... 324 6e-87 UniRef50_C1F4W9 UvrABC system protein C n=1 Tax=Acidobacterium c... 324 6e-87 UniRef50_A9NEZ8 Excinuclease ABC, subunit C n=1 Tax=Acholeplasma... 324 6e-87 UniRef50_C1B4L2 UvrABC system protein C n=10 Tax=Actinomycetales... 323 1e-86 UniRef50_A0M672 UvrABC system protein C n=7 Tax=Bacteroidetes Re... 321 5e-86 UniRef50_C0QWI5 Excinuclease ABC, C subunit n=2 Tax=Brachyspira ... 321 6e-86 UniRef50_D1BHL1 Excinuclease ABC subunit C n=16 Tax=Actinomyceta... 320 9e-86 UniRef50_Q72IF0 UvrABC system protein C n=5 Tax=Thermaceae RepID... 320 1e-85 UniRef50_B2RM62 UvrABC system protein C n=4 Tax=Bacteroidetes Re... 319 2e-85 UniRef50_A6NZD4 Putative uncharacterized protein n=1 Tax=Bactero... 319 2e-85 UniRef50_B0SB16 UvrABC system protein C n=6 Tax=Leptospira RepID... 318 3e-85 UniRef50_C7N8N1 Excinuclease ABC, C subunit n=12 Tax=Fusobacteri... 317 6e-85 UniRef50_A9WT69 UvrABC system protein C n=2 Tax=Actinobacteria (... 317 6e-85 UniRef50_C9RQJ8 Excinuclease ABC, C subunit n=1 Tax=Fibrobacter ... 315 4e-84 UniRef50_Q2Z008 Exconuclease ABC subunit C (Fragment) n=1 Tax=un... 313 1e-83 UniRef50_Q8REL0 UvrABC system protein C n=10 Tax=Bacteria RepID=... 312 2e-83 UniRef50_D2LI59 Excinuclease ABC, C subunit n=1 Tax=Rhodomicrobi... 312 3e-83 UniRef50_Q2S280 UvrABC system protein C n=1 Tax=Salinibacter rub... 311 4e-83 UniRef50_C5CDH0 Excinuclease ABC, C subunit n=1 Tax=Kosmotoga ol... 311 5e-83 UniRef50_C2MAD2 Excinuclease ABC subunit C n=1 Tax=Porphyromonas... 311 7e-83 UniRef50_C2KQB5 Excinuclease ABC subunit C n=2 Tax=Mobiluncus mu... 310 1e-82 UniRef50_Q5LIY7 UvrABC system protein C n=26 Tax=Bacteroidetes R... 307 8e-82 UniRef50_D2RRA5 Excinuclease ABC, C subunit n=2 Tax=Halobacteria... 303 1e-80 UniRef50_Q7V7L7 UvrABC system protein C n=43 Tax=Cyanobacteria R... 303 1e-80 UniRef50_A9BGW2 UvrABC system protein C n=1 Tax=Petrotoga mobili... 301 3e-80 UniRef50_A8SNK4 Putative uncharacterized protein n=1 Tax=Parvimo... 301 4e-80 UniRef50_Q26GF0 Excinuclease ABC, C subunit n=5 Tax=cellular org... 301 5e-80 UniRef50_C8WI08 Excinuclease ABC, C subunit n=3 Tax=Coriobacteri... 301 5e-80 UniRef50_D1VGT9 Excinuclease ABC, C subunit n=1 Tax=Frankia sp. ... 301 7e-80 UniRef50_C3JAE7 Excinuclease ABC subunit C n=2 Tax=Bacteria RepI... 300 1e-79 UniRef50_C6X0K5 Excinuclease ABC subunit C n=9 Tax=Bacteroidetes... 299 2e-79 UniRef50_C5NYN4 Excinuclease ABC subunit C n=1 Tax=Gemella haemo... 299 2e-79 UniRef50_A5M6P1 Excinuclease ABC subunit C n=1 Tax=Streptococcus... 298 4e-79 UniRef50_A7VUD6 Putative uncharacterized protein n=4 Tax=Clostri... 295 2e-78 UniRef50_Q255T2 UvrABC system protein C n=17 Tax=Chlamydiaceae R... 295 3e-78 UniRef50_B7J223 UvrABC system protein C n=22 Tax=Borrelia RepID=... 295 3e-78 UniRef50_D1PLG8 Excinuclease ABC subunit C n=3 Tax=Ruminococcace... 295 3e-78 UniRef50_D2MQ80 Excinuclease ABC, C subunit n=7 Tax=Bacteria Rep... 295 4e-78 UniRef50_B0MPX2 Putative uncharacterized protein n=1 Tax=Eubacte... 295 4e-78 UniRef50_C7LYI3 Excinuclease ABC, C subunit n=1 Tax=Acidimicrobi... 294 6e-78 UniRef50_Q11YP9 UvrABC system protein C n=3 Tax=Bacteroidetes Re... 294 7e-78 UniRef50_B2JFL2 Excinuclease ABC, C subunit n=2 Tax=Burkholderia... 293 1e-77 UniRef50_Q2FPC6 UvrABC system protein C n=16 Tax=Archaea RepID=U... 290 1e-76 UniRef50_A3NXK5 UvrABC system protein C n=59 Tax=Proteobacteria ... 284 5e-75 UniRef50_C3XLG8 Excinuclease abc subunit c n=1 Tax=Helicobacter ... 283 1e-74 UniRef50_C1SGC9 Excinuclease ABC, C subunit n=1 Tax=Denitrovibri... 283 2e-74 UniRef50_A4FBL9 UvrABC system protein C n=26 Tax=Actinomycetales... 279 2e-73 UniRef50_Q83NI9 UvrABC system protein C n=2 Tax=Tropheryma whipp... 279 3e-73 UniRef50_Q2SSM4 UvrABC system protein C n=5 Tax=Mollicutes RepID... 278 4e-73 UniRef50_A9EYQ9 Excinuclease ABC, subunit C n=1 Tax=Sorangium ce... 278 5e-73 UniRef50_C5ADA8 UvrABC system protein C (Protein uvrC) n=4 Tax=P... 276 1e-72 UniRef50_B5PNJ7 Anaerobic glycerol-3-phosphate dehydrogenase sub... 275 3e-72 UniRef50_B9LUM9 UvrABC system protein C n=9 Tax=Halobacteriaceae... 273 1e-71 UniRef50_A4ECP7 Putative uncharacterized protein n=1 Tax=Collins... 272 3e-71 UniRef50_D0WMS6 Excinuclease ABC subunit C n=1 Tax=Actinomyces s... 269 2e-70 UniRef50_A8F4P7 UvrABC system protein C n=6 Tax=Thermotogaceae R... 268 4e-70 UniRef50_B9KC51 UvrABC system protein C n=1 Tax=Thermotoga neapo... 265 5e-69 UniRef50_Q2NJ78 UvrABC system protein C n=3 Tax=Candidatus Phyto... 264 8e-69 UniRef50_Q14NX3 Putative uvrc protein excinuclease abc subunit c... 264 8e-69 UniRef50_UPI0001977D11 excinuclease ABC subunit C n=1 Tax=Helico... 262 3e-68 UniRef50_Q8EWS6 UvrABC system protein C n=1 Tax=Mycoplasma penet... 260 1e-67 UniRef50_D1AXF7 Excinuclease ABC, C subunit n=1 Tax=Streptobacil... 260 1e-67 UniRef50_A8ESX8 UvrABC system protein C n=26 Tax=Epsilonproteoba... 259 3e-67 UniRef50_B1AJ20 UvrABC system protein C n=15 Tax=Ureaplasma RepI... 255 3e-66 UniRef50_A9A4M1 Excinuclease ABC, C subunit n=2 Tax=Thaumarchaeo... 251 7e-65 UniRef50_B8DRE6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibri... 245 4e-63 UniRef50_C0QPW8 Excinuclease ABC subunit C n=5 Tax=Aquificales R... 245 4e-63 UniRef50_Q7VK73 UvrABC system protein C n=2 Tax=Helicobacter Rep... 244 7e-63 UniRef50_Q7NBC4 UvrABC system protein C n=1 Tax=Mycoplasma galli... 241 6e-62 UniRef50_A7HJI0 UvrABC system protein C n=3 Tax=Thermotogaceae R... 240 1e-61 UniRef50_Q72DX8 UvrABC system protein C n=3 Tax=Desulfovibrio vu... 240 1e-61 UniRef50_C3XEM6 Excinuclease ABC subunit C n=1 Tax=Helicobacter ... 239 2e-61 UniRef50_A8FMV1 UvrABC system protein C n=22 Tax=Campylobacter R... 238 4e-61 UniRef50_Q313T1 UvrABC system protein C n=2 Tax=Desulfovibrio de... 237 9e-61 UniRef50_C1PCU9 Excinuclease ABC C subunit domain protein n=1 Ta... 237 1e-60 UniRef50_A7BXI2 UvrABC system protein C n=1 Tax=Beggiatoa sp. PS... 235 4e-60 UniRef50_C8P3R6 Excinuclease ABC, C subunit n=1 Tax=Erysipelothr... 233 2e-59 UniRef50_B5Y9S9 Excinuclease ABC, C subunit n=1 Tax=Coprothermob... 230 1e-58 UniRef50_B4U9X0 UvrABC system protein C n=3 Tax=Aquificaceae Rep... 229 2e-58 UniRef50_C4XSA3 UvrABC system protein C n=1 Tax=Desulfovibrio ma... 222 3e-56 UniRef50_D2L1M6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibri... 219 2e-55 UniRef50_Q0RH00 DNA excision repair enzyme UvrABC; UvrC subunit ... 217 1e-54 UniRef50_A8GXA7 Excinuclease ABC subunit C n=2 Tax=Rickettsia be... 213 2e-53 UniRef50_D1NSJ5 Excinuclease ABC subunit C n=3 Tax=Actinobacteri... 207 1e-51 UniRef50_D2RB48 Excinuclease ABC, C subunit n=1 Tax=Gardnerella ... 204 1e-50 UniRef50_P47448 UvrABC system protein C n=2 Tax=Mycoplasma RepID... 203 2e-50 UniRef50_B8DGB7 UvrABC system protein C (Protein UvrC) (Excinucl... 203 2e-50 UniRef50_B9P7P3 Predicted protein n=3 Tax=cellular organisms Rep... 202 2e-50 UniRef50_C2CW30 Excinuclease ABC subunit C n=1 Tax=Gardnerella v... 200 1e-49 UniRef50_A0AGX5 Complete genome n=3 Tax=Listeria RepID=A0AGX5_LISW6 195 4e-48 UniRef50_C9M9X8 Excinuclease ABC, C subunit n=1 Tax=Jonquetella ... 195 4e-48 UniRef50_B3DRV5 UvrABC system protein C n=18 Tax=Bifidobacterium... 194 6e-48 UniRef50_Q6KH99 Excinuclease ABC nuclease subunit C n=2 Tax=Bact... 192 4e-47 UniRef50_D1Y7G8 Excinuclease ABC, C subunit n=1 Tax=Pyramidobact... 187 1e-45 UniRef50_A7BFX2 Excinuclease ABC subunit C (Fragment) n=1 Tax=Ps... 184 7e-45 UniRef50_Q98R54 EXCINUCLEASE ABC SUBUNIT C n=1 Tax=Mycoplasma pu... 182 3e-44 UniRef50_B2S367 UvrABC system protein C n=4 Tax=Treponema RepID=... 182 5e-44 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 178 5e-43 UniRef50_O84899 UvrABC system protein C n=13 Tax=Mycoplasma RepI... 176 2e-42 UniRef50_Q4A6D1 Excinuclease ABC subunit C n=2 Tax=Mycoplasma sy... 169 2e-40 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 167 9e-40 UniRef50_B1H0C4 Excinuclease ABC subunit C n=1 Tax=uncultured Te... 160 1e-37 UniRef50_D1B5F2 Excinuclease ABC, C subunit n=2 Tax=Synergistace... 160 1e-37 UniRef50_Q7UPD6 Excinuclease ABC subunit C n=5 Tax=Planctomyceta... 160 1e-37 UniRef50_B2KBS4 Excinuclease ABC C subunit domain protein n=1 Ta... 156 2e-36 UniRef50_B3E0M3 Excinuclease ABC subunit C n=1 Tax=Methylacidiph... 156 3e-36 UniRef50_A5KSN0 Excinuclease ABC, C subunit domain protein n=2 T... 155 5e-36 UniRef50_B9XGZ6 Excinuclease ABC C subunit domain protein n=2 Ta... 151 7e-35 UniRef50_D2R0D2 Excinuclease ABC C subunit domain protein n=1 Ta... 150 1e-34 UniRef50_B8FTB6 Excinuclease ABC C subunit domain protein n=2 Ta... 150 1e-34 UniRef50_D1N623 Excinuclease ABC, C subunit n=1 Tax=Victivallis ... 150 2e-34 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 145 3e-33 UniRef50_B1ZNL0 Excinuclease ABC C subunit domain protein n=2 Ta... 144 7e-33 UniRef50_Q7NKN5 Excinuclease ABC subunit C n=1 Tax=Gloeobacter v... 144 9e-33 UniRef50_A6DMD6 Excinuclease ABC subunit C n=1 Tax=Lentisphaera ... 142 3e-32 UniRef50_A7GIE5 GIY-YIG domain protein n=10 Tax=Clostridium RepI... 142 4e-32 UniRef50_Q1NJF8 Helix-hairpin-helix motif (Fragment) n=1 Tax=del... 137 1e-30 UniRef50_A4CG28 Excinuclease ABC, C subunit (Fragment) n=1 Tax=P... 135 5e-30 UniRef50_C0A483 Excinuclease ABC C subunit domain protein n=1 Ta... 135 6e-30 UniRef50_A6M201 Excinuclease ABC, C subunit domain protein n=5 T... 135 6e-30 UniRef50_B4CU00 Excinuclease ABC C subunit domain protein n=1 Ta... 132 3e-29 UniRef50_D1J7M2 UvrABC system protein C (UvrC protein, Excinucle... 132 3e-29 UniRef50_Q601Y1 Excinuclease ABC subunit C n=4 Tax=Mycoplasma hy... 130 1e-28 UniRef50_B2URH7 Excinuclease ABC C subunit domain protein n=1 Ta... 129 2e-28 >UniRef50_Q47Z18 UvrABC system protein C n=274 Tax=Gammaproteobacteria RepID=UVRC_COLP3 Length = 639 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/621 (54%), Positives = 434/621 (69%), Gaps = 21/621 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD++AFL+ VT Q GVYRMYD+ VIYVGKAK LKKRL+SYFR ++ S KT+ LV QI Sbjct: 20 FDSEAFLRVVTEQAGVYRMYDSKQVVIYVGKAKQLKKRLASYFRKDVGSVKTQVLVKQIA 79 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I+VTVTHTE EAL+LE+NYIK YQP+YN+LLRDDKSYP++ ++ HP+L +HRG K Sbjct: 80 AIEVTVTHTEGEALILENNYIKKYQPKYNILLRDDKSYPYLLITAHKHPKLGLHRGGKKV 139 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 KGEYFGPFP AV E+L L+QKIFPIRQCE+S YR RSRPCLQ+Q+GRC PCV+ +S Sbjct: 140 KGEYFGPFPTVGAVWESLRLMQKIFPIRQCEDSYYRARSRPCLQHQLGRCSAPCVDK-IS 198 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 ++Y +QV +LFL GK V+ QL++RME AS L FE AA+ RDQI +R+V ++Q Sbjct: 199 VDDYKEQVNLAKLFLQGKSSAVIEQLVARMELASNELHFELAAKYRDQIVTLRKVQQQQH 258 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 VS +LDV+G+ D C+H+LFIRQ K+LGS+SYFP VP + SE+++ F+ Q Y Sbjct: 259 VSGHVAELDVVGLYRDKTQVCIHLLFIRQHKILGSKSYFPTVPSESSDSEILQAFIAQHY 318 Query: 305 L------QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 L G ++P EI++ ++ LA LSE A + + T R +RA+YLKLA Sbjct: 319 LSNEMLSHGKVQSSIPKEIVIKESIEQVVELARLLSEQAEYDVKISTNTRSERAQYLKLA 378 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 TNA TAL ++ S + ++ R AL V +L ++R+ECFDISHTMG+QTVAS VVF+ Sbjct: 379 GTNAHTALVTRNSHKESMQARFVALNEVFELENGIQRIECFDISHTMGQQTVASNVVFNQ 438 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKIPDVILIDG 467 GPL+ +YRRYN+ GITPGDDYAAM L +RYGK + K+PD++ IDG Sbjct: 439 EGPLKTDYRRYNVFGITPGDDYAAMAFALNKRYGKLKANPIKPEEHGALEKLPDIVFIDG 498 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQLA+A+ F++L ++ PLL+GVAKG RK GLETL + SLP SPAL Sbjct: 499 GKGQLAKAEEFFSQLALTRT---PLLVGVAKGESRKPGLETLILAGSHQLISLPATSPAL 555 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 H++QHIRDESH AI GHR KR KV S LE+IEG+G K+RQ LL ++GGLQ + A + Sbjct: 556 HLVQHIRDESHRFAITGHRAKRQKVSKKSRLESIEGIGAKKRQSLLTFLGGLQEVMQADI 615 Query: 588 EEIAKVPGISQGLAEKIFWSL 608 +AKVPGIS LAEKI +L Sbjct: 616 TALAKVPGISHVLAEKIHNAL 636 >UniRef50_Q0A8X6 UvrABC system protein C n=19 Tax=Gammaproteobacteria RepID=UVRC_ALHEH Length = 611 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 305/605 (50%), Positives = 429/605 (70%), Gaps = 13/605 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD KAF++++T +PGVYRM D G V+YVGKA++LKKR++SYF + S + E ++ Q+Q Sbjct: 8 FDPKAFVRSLTQRPGVYRMVDGRGEVLYVGKARNLKKRVASYFTRSRKSARIELMLTQVQ 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKH 123 I VTVTHTE EAL+LE+ IK +PRYNVLLRDDKSYP+I+LS PRL+ HRGA+ Sbjct: 68 DIQVTVTHTEAEALILENTLIKELRPRYNVLLRDDKSYPWIYLSSHQDFPRLSFHRGARK 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 G +FGPFP+G+AVRETL LQK+F IRQC++S + NRSRPCLQ+QI RC PCV G + Sbjct: 128 GPGRWFGPFPSGHAVRETLNTLQKVFRIRQCQDSFFSNRSRPCLQHQIKRCTAPCV-GYI 186 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S E Y + V + LFL G+ +QV+ +L +RME AS+ LEFE AA+ RD+IQA++ V E+Q Sbjct: 187 SREAYQEDVRHAVLFLEGRSNQVIEELGARMEAASERLEFEAAAQYRDRIQALQAVQERQ 246 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 ++ DLDVI D ACV V F RQG+ LG++ ++P++P G + +EV+ F+ ++ Sbjct: 247 YIVGEKGDLDVIACVSDGVTACVTVFFFRQGRNLGNKVFYPRIPEGADEAEVLAAFLARY 306 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y+ R P E+++ + ++ +L ++LS +G ++ V R +R R+L++A TNA Sbjct: 307 YIG----RKAPPELVISHTIPEQKVLGEALSRESGHRVRVTHSVRKERRRWLEMALTNAR 362 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLR 422 ALT++ S Q+ RL AL L+LP + +R+ECFDISHT GE TVA+CVVF+ +GPL+ Sbjct: 363 HALTARTSTQAMALHRLEALQDALQLPALPERIECFDISHTRGEATVAACVVFNQDGPLK 422 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVILIDGGKGQLAQAKNVFAE 481 ++YRR+NI GITPGDDYAAM Q L RRY + + +PD++LIDGGKGQ+AQA+ V E Sbjct: 423 SDYRRFNIRGITPGDDYAAMRQALSRRYQRLKKGEGVLPDILLIDGGKGQVAQAEAVLEE 482 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE-GEGFSLPPDSPALHVIQHIRDESHDH 540 L V + L+G+AKG +R+ G ETL E G +L PD+PAL ++Q +RDE+H Sbjct: 483 LQV----DDVYLVGIAKGPERRPGEETLILSDEDGREKTLGPDAPALQLLQQVRDEAHRF 538 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI GHR++R K + S+LE I G+GPKRRQ LL++ GGL+ + A VE++A+ PGIS+ L Sbjct: 539 AIAGHRQQRGKARTRSALEDIPGLGPKRRQALLRHFGGLKAVARAGVEDLARTPGISRAL 598 Query: 601 AEKIF 605 A+K++ Sbjct: 599 AQKVY 603 >UniRef50_C7RAS4 Excinuclease ABC, C subunit n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAS4_KANKD Length = 612 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 306/600 (51%), Positives = 418/600 (69%), Gaps = 10/600 (1%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K L ++ +PGVY+M G +YVGKAK+L R+ SYF S KTE LV I+ I Sbjct: 16 KKILAHLSHKPGVYQMLGKDGETLYVGKAKNLSNRVKSYFTRQYQSPKTELLVTYIEDIH 75 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 TVT TETEALLLE+N IK Y+PR+NVL RDDKSYP++FLS PRLA HRGAK KG+ Sbjct: 76 TTVTETETEALLLENNLIKKYKPRFNVLFRDDKSYPYVFLSAGDFPRLAYHRGAKKEKGD 135 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGPFP+ AVR++L+L+QK F IRQCE+S + NRSRPCLQYQI RC PCV+ +S+E+ Sbjct: 136 YFGPFPSSSAVRQSLSLIQKTFQIRQCEDSYFANRSRPCLQYQIKRCTAPCVD-YISKED 194 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 YA+ VE V+LF GK +QV+ +L +M+ ASQ L+FE AAR RDQI+ +R V ++Q +S Sbjct: 195 YAKDVENVKLFYQGKSEQVIKRLQKKMDVASQELDFELAARYRDQIKQMRHVMQQQVISG 254 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 T DLDVIGVA+ +G+ C+ ++FIRQG ++G+++YFPKVP ++L E+V TF+G +YL G Sbjct: 255 TASDLDVIGVAYASGVCCILLVFIRQGMIVGNKTYFPKVPKHSDLQEIVSTFLGFYYLSG 314 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 ++ +P +++++ D L ++ E G K+ ++ RG + A NA +L Sbjct: 315 AE---IPKQVVIESLPEDIEALQEAFGEQRGNKVTIRQASRGQVKEWQTFANKNAEHSLR 371 Query: 368 SKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 +KL+ +S QRL L L++ + K +ECFDISHT G+QTVASCVVFD NGP +A+YR Sbjct: 372 AKLNSKSNFTQRLLDLQKALQMEHMPKHVECFDISHTQGQQTVASCVVFDENGPKKADYR 431 Query: 427 RYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVS 485 +NI+GIT GDDYAAM Q L RRY + D+ + +PD++++DGGKGQLA+A+ VF EL++ Sbjct: 432 IFNISGITGGDDYAAMQQALTRRYKRLKDEQQALPDLVIVDGGKGQLAKAEEVFNELEL- 490 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 L+GV+KG+DRK G+E ++F + + L DS A+H IQHIRDE+H AI H Sbjct: 491 ---KSSYLIGVSKGSDRKVGMEQIWFPGQHQPLLLDDDSKAMHFIQHIRDEAHRFAITKH 547 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 R +R K S LE I GVG KRRQ LL++ GG Q + ASV++IA PG+S LA+KI+ Sbjct: 548 RHQRKKSATKSLLEEIPGVGAKRRQALLRHFGGWQEVEKASVKDIAGAPGVSMSLAQKIY 607 >UniRef50_Q820N6 UvrABC system protein C n=2 Tax=Proteobacteria RepID=UVRC_NITEU Length = 604 Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust. Identities = 315/609 (51%), Positives = 413/609 (67%), Gaps = 14/609 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD KAF+ T+ +QPGVYRM +A G VIYVGKA DL+KR+SSYF+ + S + + +V+QI Sbjct: 6 FDGKAFVLTLPAQPGVYRMLNAAGDVIYVGKAIDLRKRVSSYFQKSGLSPRIQLMVSQIA 65 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+ PRLA +RGA Sbjct: 66 GIETTVTRSEAEALLLENNLIKSLAPRYNILFRDDKSYPYLLLTRHIFPRLAFYRGALDD 125 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 + +YFGPFPN V+ ++ LLQK+F +R CENSV+ +R+RPCL YQI RC GPCV GL++ Sbjct: 126 RHQYFGPFPNAGVVKSSIQLLQKVFRLRTCENSVFDHRTRPCLLYQIKRCSGPCV-GLIT 184 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E Y Q V+ +FL GK D+VL + +M TAS ++E+AA++RDQ+QA+R++ EKQF Sbjct: 185 PEAYQQDVKSAAMFLQGKQDEVLKTIEQKMFTASDQQDYEQAAQLRDQMQALRKIQEKQF 244 Query: 245 V-SNTGDDLDVIGVAF--DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 V S D DVI A D+ V+++ IR G+ LG +++FP+ ++S V+E FV Sbjct: 245 VDSGKALDADVIACAIEPDSHAVAVNLVMIRSGRHLGDKTFFPQNVYEADISTVLEAFVT 304 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q YL R++P I+L + TLL LS+ AG KI + T P G+R ++L +A N Sbjct: 305 QHYLN----RSVPPLIILGQKIR-VTLLQKLLSDQAGHKITLTTNPIGERRKWLDMAAEN 359 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 A AL L QQ++ RL AL L LP + R+ECFDISHTMGE T+ASCVV+D Sbjct: 360 AQLALQQMLIQQASQEDRLQALQEALNLPGLARIECFDISHTMGEATIASCVVYDRFAMR 419 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVILIDGGKGQLAQAKNVFA 480 EYRRYNITGI PGDDYAAM VL+RRY K A+++ K+PD+ILIDGGKGQ+ A V Sbjct: 420 NGEYRRYNITGIVPGDDYAAMRDVLQRRYAKLAMEEGKLPDLILIDGGKGQIRVASEVMI 479 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 EL + N L+GVAKG RK GLE L + E LP D PALH+IQ IRDE+H Sbjct: 480 ELGL----NDIPLVGVAKGETRKPGLEQLILPWQEEALHLPDDHPALHLIQQIRDEAHRF 535 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI GHR KRAK + S+LE I G+G KRRQ LL GGL+G++NAS+EE+ + GIS+ L Sbjct: 536 AIQGHRAKRAKTRKISTLEQISGIGTKRRQSLLTRFGGLKGVKNASIEELQQTEGISRSL 595 Query: 601 AEKIFWSLK 609 AEKI+ L+ Sbjct: 596 AEKIYRELR 604 >UniRef50_B6IZT9 UvrABC system protein C n=6 Tax=Coxiella burnetii RepID=UVRC_COXB2 Length = 609 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 308/605 (50%), Positives = 413/605 (68%), Gaps = 13/605 (2%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + AFLKT+ + GVY+M DA G VIYVGKA++L+KR+SSYFR L S KT+A++AQ+Q Sbjct: 5 NPSAFLKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQS 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH---PRLAMHRGAK 122 I T+T E EALLLE ++IK ++PRYNVLLRDDKSYP+++L+ TH PRL +RGAK Sbjct: 64 IQTTITRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLA--THQKFPRLDFYRGAK 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 A G YFGP+PN +VRE LAL+QK+F +RQC S ++NR+RPCLQYQI RC PCV G Sbjct: 122 KAPGRYFGPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCV-GY 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+E+EY +QVE LF GK+DQV+ +L RME AS+NL FEEAA RDQI+ +RR+ ++ Sbjct: 181 VNEQEYRRQVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQ 240 Query: 243 QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 Q ++ ++D+IG+A G +LFIR G+++G + +FP P GT L + F+ Q Sbjct: 241 QIITGGKGNIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +YL + +P I+ L D+ + +LS RK+ + + R ++ +A NA Sbjct: 301 YYLSPLRNGDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNA 360 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPL 421 A AL+ L+Q++T +L A+ L LP + R+ECFDISHT+GE TVASCVVF GP+ Sbjct: 361 AQALSQHLAQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPI 420 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFA 480 + +YRR+NI+G+TPGDDY A+ Q L RRY + + I PDV+LIDGG GQL QA V Sbjct: 421 KKDYRRFNISGVTPGDDYGALRQALTRRYVRLKEGEGILPDVLLIDGGMGQLRQAAEVLE 480 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 EL VS +L +AKG RKAGLE LF E LP D+ A H+IQ IRDE+H Sbjct: 481 ELQVS----GVILTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRDEAHRF 536 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI H +RAK + S+L+ IEG+GPKRRQ LLKY GGLQ L+ AS+EEIA+VPG+S+ L Sbjct: 537 AITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETL 596 Query: 601 AEKIF 605 A+ I+ Sbjct: 597 AKAIY 601 >UniRef50_B2I637 UvrABC system protein C n=15 Tax=Xanthomonadaceae RepID=UVRC_XYLF2 Length = 621 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 302/608 (49%), Positives = 406/608 (66%), Gaps = 14/608 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD K F +++ PGVYRMY A T++YVGKA L+KR++SYF + + A++AQ+ Sbjct: 9 FDGKRFAAHLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVV 68 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 ++DVT+T E EALLLE+ IK PRYNVLLRDDKSYP++ L+ + PR+A+HRG + Sbjct: 69 RMDVTITRNEAEALLLENQLIKSLTPRYNVLLRDDKSYPYVLLTREAWPRIALHRGPQIV 128 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G YFGP+P AVR+ L L+ K+F +R CE+SV+RNRSRPCLQYQIGRC PCV +V+ Sbjct: 129 PGRYFGPYPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCV-NVVT 187 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 + Y + V V LFL GK D + +LI M+ AS++LEFE+AAR+RD + ++R + +Q+ Sbjct: 188 HDNYTEAVHRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQY 247 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 V DLDV+ A +G ACV +L R G+ LG+R +FPK G +E++ FV Q+Y Sbjct: 248 VDGRAADLDVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYY 307 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + P EILLD + D TLL + S + KI+++ RG+RA Y++LA NA Sbjct: 308 AEYPP----PPEILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQV 363 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL+++L+ Q R A+ +L L +KR+ECFDISHTMGE TVASCVVFDA GP+R+ Sbjct: 364 ALSTELTSQRAQRVRSEAVRQLLGLEGPIKRVECFDISHTMGEATVASCVVFDAVGPVRS 423 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI---PDVILIDGGKGQLAQAKNVFA 480 +YRRYNITGITPGDDYAAM Q + RR+ +A+++ K PDV+ IDGG GQLAQAK Sbjct: 424 QYRRYNITGITPGDDYAAMRQAIERRFRRAVEEDKQGERPDVLFIDGGAGQLAQAKMALN 483 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + V LL+GV+KG +R+AG ETL +G+ SPAL IQ +RDE+H Sbjct: 484 AVGV----ESVLLVGVSKGEERRAGHETLIM-LDGQELHPGAASPALQFIQQVRDEAHRF 538 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI GHR +R K + TS LE I G+G +RR LLK+ GGL G++ A EIA+V GIS L Sbjct: 539 AITGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTAL 598 Query: 601 AEKIFWSL 608 A KI+ SL Sbjct: 599 AAKIYASL 606 >UniRef50_Q2SF17 UvrABC system protein C n=47 Tax=Proteobacteria RepID=UVRC_HAHCH Length = 612 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 295/609 (48%), Positives = 403/609 (66%), Gaps = 10/609 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FDAK+FLK +T++PGVYRM DA G V+YVGKA++LK R+SSYFR+ S KT ALV +I Sbjct: 7 FDAKSFLKQLTTRPGVYRMMDARGEVLYVGKARNLKNRVSSYFRNTGVSIKTRALVEKIA 66 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMH--RGA 121 I++T+TH+ETEALLLE N IK +P YN+LLRDDKSYP+I+LS D +P L R Sbjct: 67 DIEITITHSETEALLLEQNLIKTLKPPYNILLRDDKSYPYIYLSSHDEYPSLTFRRVRQK 126 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K KG +FGP+ + AVRE+LALLQKIF IRQCE+S + NRSRPCLQ+QIGRC PCV G Sbjct: 127 KTGKGRFFGPYTSAAAVRESLALLQKIFRIRQCEDSFFSNRSRPCLQHQIGRCSAPCV-G 185 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L+ + YA+ + + +FL G++ +++ + I +ME AS L+FE AA +RDQ+ +RRV E Sbjct: 186 LIDPQSYAEDMSHATMFLEGRNPEIINETIQQMEVASAQLDFERAAVLRDQVDYLRRVQE 245 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 +Q + D+D ++ + VH LFIR G+V+GS+S++ ++ +++ +F+ Sbjct: 246 QQAIEGVARDIDAFALSSSLELVVVHGLFIRAGRVVGSKSFYLSERLESDDGDLLSSFLN 305 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y + LP EI L+DK L + E+ R + ++ R +RA +L LA+TN Sbjct: 306 QYYFGEHAIYGLPQEITTTVGLTDKDALKAAFKEVFNRNVRIEHNVRSNRAEWLHLAQTN 365 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDANGP 420 A AL++++ Q QR + L L VKR+ECFD+SHT GE TVASCVVF G Sbjct: 366 ANQALSTRMQSQDAQLQRWQSFCDALNLEASVKRVECFDVSHTFGEATVASCVVFGPEGA 425 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVF 479 ++ YRRYNI + GDDY AM Q L RRY K D D +PD+ILIDGGKGQL A VF Sbjct: 426 IKDLYRRYNIKDVPAGDDYHAMEQALTRRYSKLKDSDVGLPDIILIDGGKGQLGIAHQVF 485 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL ++ L+GVAKG RK G+ETLF + +LP DS ALH+IQ IRDE+H Sbjct: 486 DELQITG----VTLIGVAKGVTRKPGMETLFISADNSILNLPGDSTALHLIQQIRDEAHR 541 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI GHR +R K + S L+ + G+GPKRR+ LL Y G ++ + AS+EEI +VPGIS+ Sbjct: 542 FAITGHRNQRNKKRTQSVLDAVPGIGPKRRRDLLNYFGSVRNIERASLEEIKRVPGISEV 601 Query: 600 LAEKIFWSL 608 +A+ I+ + Sbjct: 602 IAQTIYAAF 610 >UniRef50_B2FK26 UvrABC system protein C n=29 Tax=Proteobacteria RepID=UVRC_STRMK Length = 614 Score = 577 bits (1486), Expect = e-163, Method: Compositional matrix adjust. Identities = 306/606 (50%), Positives = 410/606 (67%), Gaps = 12/606 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD KAF +++ PGVYRMY A T++YVGKA+ L+ R+ SYF + + + ++++QI Sbjct: 9 FDGKAFAAQLSTAPGVYRMYAADDTLLYVGKARALRNRVGSYFNGSPKNARIMSMISQIV 68 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 ++DVTVT +E EALLLE+ IK PRYNV LRDDK+YP + L+ + PR+A+HRG + Sbjct: 69 RMDVTVTRSEAEALLLENQLIKSLSPRYNVSLRDDKTYPHVLLTREDWPRIALHRGPRAI 128 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G YFGP+P AVRETL L+ K+F +R CE+SV+RNRSRPCLQYQIGRC PCVE LV+ Sbjct: 129 PGRYFGPYPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVE-LVA 187 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 EYA+ V LFL GK D++ +L +M+ AS+ LEFE+AAR+RD I ++R + +Q+ Sbjct: 188 PAEYAESVRRAALFLEGKSDELTRELGEQMQAASEALEFEQAARLRDLISSLRSMQTRQY 247 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 V DLDV+ VA ACV +L R G+ LG+R +FP+ G EV+ FV Q+Y Sbjct: 248 VDGRAADLDVLAVAMQGSQACVLLLAFRDGRNLGTRPFFPRTNGEESPEEVLAAFVSQYY 307 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 ++ P EILLD + D LL +LS A RK+ ++ RG+RA Y++LA NA Sbjct: 308 IEFEP----PREILLDREIPDADLLVAALSASAERKVQLKWNVRGERAGYVELASRNAQL 363 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 L ++L+ ++ H R AL +L L E VKR+ECFDISHT+GE TVASCVVFDA GP+RA Sbjct: 364 TLATELNSRNAQHARSDALREMLGLAEPVKRVECFDISHTLGEATVASCVVFDAAGPVRA 423 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFAEL 482 +YRR+NI+GI PGDDYAAM Q + RR+ +A+++ + PDV+LIDGG GQLAQA+ A+L Sbjct: 424 QYRRFNISGIEPGDDYAAMRQAIDRRFRRAVEEQGVLPDVLLIDGGAGQLAQAQAALADL 483 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 V LL+GVAKG +R+AG E L P+G +PAL IQ +RDE+H AI Sbjct: 484 GVEG----VLLVGVAKGVERRAGHEALVM-PDGRELRPGAANPALQFIQQVRDEAHRFAI 538 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 GHR +R K + TS LE I G+GP+RR LLK+ GGL GL+ A EIAKV GI+ LA Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIAKVEGINDALAA 598 Query: 603 KIFWSL 608 +I+ +L Sbjct: 599 RIYANL 604 >UniRef50_Q47EE8 UvrABC system protein C n=6 Tax=Proteobacteria RepID=UVRC_DECAR Length = 603 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 300/611 (49%), Positives = 405/611 (66%), Gaps = 18/611 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FDAKAFL T+T PGVYRM D GG V+YVGKAK+LKKR++SYFR NL+S + +V+QI Sbjct: 3 FDAKAFLATLTELPGVYRMLDIGGNVLYVGKAKNLKKRVASYFRENLSSPRIAHMVSQIA 62 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I+ T T TE EALLLE+N IK PRYN+L RDDKSYP+I LS PRL RG Sbjct: 63 SIETTATRTEAEALLLENNLIKSLAPRYNILFRDDKSYPYIVLSKGKFPRLGFFRGNPDR 122 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 K +YFGP+P+ +AVR+++ L+QK+F +R CE++V+ NRSRPCL YQI RC GPCV G +S Sbjct: 123 KADYFGPYPSSWAVRDSIHLMQKMFRLRTCEDTVFSNRSRPCLLYQIKRCSGPCV-GFIS 181 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 ++YA ++ +FL GK +V +L ME AS L FE+AA RDQIQ++ +V EKQF Sbjct: 182 ADDYAADIQLAAMFLLGKQQEVTRRLTKSMEEASAKLAFEQAAVFRDQIQSLHQVQEKQF 241 Query: 245 VSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 VS++ G+D+DV+ +AG CV++ +R G+ LG R +FP +E S+ F+ Q Sbjct: 242 VSSSKGEDVDVLVAIKEAGQLCVNLAMVRGGRHLGDRPFFPTNAADSEPSDACAAFIRQH 301 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADS---LSELAGRKINVQTKPRGDRARYLKLART 360 Y P I L + L + ++ L+ELAGR + VQ ++++A Sbjct: 302 Y----AAHPAPARI-LSYPLPSEDEAGETEVALAELAGRPVPVQEGRGATHKAWVEMAIQ 356 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANG 419 NA A+ +K + QRL AL L+LPE + R+ECFDISHTMGE TVASCVV++ N Sbjct: 357 NARLAILAKNQATAQQEQRLAALQDALQLPEPIARIECFDISHTMGEATVASCVVYEGNR 416 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVILIDGGKGQLAQAKNV 478 +++YRR+NI I GDDYAAM Q + RRY A + PD+ILIDGGKGQ++ A + Sbjct: 417 MKKSDYRRFNIRDIQAGDDYAAMRQAVSRRYDSIAGGEGTAPDLILIDGGKGQVSSAFSA 476 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG-EGFSLPPDSPALHVIQHIRDES 537 A+L ++ H ++GVAKG +RK GLETL F PEG E LPP PALH+IQ IRDE+ Sbjct: 477 LADLGLT----HLPMIGVAKGEERKPGLETLIF-PEGREPLQLPPQHPALHLIQEIRDEA 531 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI GHR +R K + TS LE++ G+GP RR+ L+ GGL G+ AS++++A+VPG+S Sbjct: 532 HRFAITGHRAQRGKARKTSKLESLPGIGPARRKALVARFGGLPGVLAASIDQLAEVPGVS 591 Query: 598 QGLAEKIFWSL 608 + +AEKI +L Sbjct: 592 REMAEKIHSAL 602 >UniRef50_Q31GI3 UvrABC system protein C n=2 Tax=Bacteria RepID=UVRC_THICR Length = 613 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 298/608 (49%), Positives = 398/608 (65%), Gaps = 15/608 (2%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 QFD AFLK +T +PGVY MYDA G +IYVGKAK+LK+R+SSYF+ KTE LV+Q+ Sbjct: 8 QFDIDAFLKHLTERPGVYLMYDASGQIIYVGKAKNLKRRVSSYFKKRHEEIKTETLVSQV 67 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 I+VTVT TE+EAL+LE+ IK ++PRYN+L RDDKSYP+IF+S G P L+ HRGAK Sbjct: 68 ASIEVTVTDTESEALILENTLIKRHKPRYNILFRDDKSYPYIFVSTGKKFPSLSYHRGAK 127 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 G YFGPFPN AV +TL LQKIFP+RQC SV+ +RSRPCLQYQI RC GPCVEGL Sbjct: 128 RKVGRYFGPFPNASAVHQTLHALQKIFPVRQCTESVFNHRSRPCLQYQIKRCSGPCVEGL 187 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+E EY + V++ FL GK V+ L +M+ AS EFE+AA RD+I A+R + + Sbjct: 188 VTEAEYNEDVQHTIAFLEGKSFDVIESLGHKMQQASDEFEFEKAALYRDKISALRAIQSQ 247 Query: 243 QFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS--EVVETF 299 ++ G D DV+ +A +A CV ++ R G + GS++YFPK+ GG ++ E++ F Sbjct: 248 HLINQPGSKDTDVVALAEEANQVCVSIMMYRGGNLWGSQNYFPKI-GGQSINPGEIISAF 306 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q Y+ +P IL+ L DK+ L LSE K++++ +KLA Sbjct: 307 ITQHYID----LPIPQMILVSDVLEDKSSLETWLSEQKKAKVSIRKAVSQTHKGLMKLAL 362 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDAN 418 TNA + L +L+Q+++ +R+ +L VL L MECFDISHT G QTVASCVVF+ Sbjct: 363 TNAQSGLKQQLTQKASQAERVKSLQDVLALASPPNHMECFDISHTQGNQTVASCVVFNEG 422 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKN 477 P + YR++NI GI PGDDYAAM+Q + RRY + + +PD+I+IDGGKGQL +A + Sbjct: 423 VPNTSAYRKFNIEGIQPGDDYAAMHQAITRRYSRVKKEGLPLPDLIVIDGGKGQLNKAID 482 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 VF L++ N P L+ VAKG RKAGLE L+ EG L D ALH++ +IRDE+ Sbjct: 483 VFKTLELD---NLP-LVSVAKGEGRKAGLEILYTPFNEEGIDLEADDIALHLLNYIRDEA 538 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HR +R K + S LE I GVG K R LL + GGL ++NA+V E+ KVPGIS Sbjct: 539 HRFAITSHRSRRQKAQTHSRLEDIPGVGAKTRHKLLTHFGGLTEVKNAAVSELQKVPGIS 598 Query: 598 QGLAEKIF 605 +A+ I+ Sbjct: 599 ARIAQTIY 606 >UniRef50_Q5F928 UvrABC system protein C n=29 Tax=Betaproteobacteria RepID=UVRC_NEIG1 Length = 617 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 295/620 (47%), Positives = 402/620 (64%), Gaps = 26/620 (4%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 +QFD FLK + PGVYR +D GG V+YVGKA +LK+R+S YF+ N S + +V Q Sbjct: 9 EQFDIPLFLKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQ 68 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 ++ I+ T+T +E EAL+LE+N+IK P+YN+L RDDKSYP++ LSG +P++A +RG Sbjct: 69 VRHIETTITRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGTL 128 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 +YFGP+PN AVR+++ +LQK+F +R CE+SV+ +R RPCL YQI RC PCV G Sbjct: 129 KNPNQYFGPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCV-GH 187 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +SEE+Y V FL+GK D++ L +M+TA+ NL+FEEAAR RDQIQA+ + Sbjct: 188 ISEEDYCDSVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSN 247 Query: 243 QFVS----NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS--EVV 296 QF+ N +D+D++ +A G+ CVH + IR G+ +G +S+FP E + + Sbjct: 248 QFIDSKNPNNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYA 307 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 E FV Q YL S+ P I+ +F + D L ++L G+++ TK G+R +LK Sbjct: 308 EAFVAQHYLGKSK----PDIIISNFPVPDA--LKEALEGEHGKQMQFVTKTIGERKVWLK 361 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPE--VKRMECFDISHTMGEQTVASCVV 414 +A NA A+T + QQS R+ LA +L + + R+ECFDISHT GE T+ASCVV Sbjct: 362 MAEQNAQMAITQRHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVV 421 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI------DDSKIPDVILIDGG 468 +D ++YRRYNIT PGDDYAAM +VL RRYGK + K PDV+LIDGG Sbjct: 422 YDEQNIQPSQYRRYNITTAKPGDDYAAMREVLTRRYGKIQEAEANGESVKWPDVVLIDGG 481 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQ+ A +V+ EL + H L+G+AKG +RKAG+E L GE F LPP+SPALH Sbjct: 482 KGQIGVAVSVWEELGL-----HIPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALH 536 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 ++Q +RDESH AI GHRKKR K + TSSL I GVG KRRQ LL GGL+G+ AS E Sbjct: 537 LLQTVRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASRE 596 Query: 589 EIAKVPGISQGLAEKIFWSL 608 ++ KV GIS+ LAE I+ L Sbjct: 597 DLEKVEGISKALAETIYNHL 616 >UniRef50_Q5X1P5 UvrABC system protein C n=7 Tax=Gammaproteobacteria RepID=UVRC_LEGPA Length = 618 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 295/607 (48%), Positives = 388/607 (63%), Gaps = 19/607 (3%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 FL + S+PG+YRM D GTV+YVGKA +LKKR++SYF KT ALV+QI+ I+++ Sbjct: 13 FLTKLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEIS 72 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHA-KGE 127 VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ ++R K G Sbjct: 73 VTRSETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGN 132 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 +FGP+P AVRET+ +QKIF IR C +S ++ RSRPCLQYQI RC PCV +S E Sbjct: 133 FFGPYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVH-YISPEN 191 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y VE FL GK +L L RM+ A L FEEAA +RDQI+ +R + E+Q V Sbjct: 192 YKLSVEDAIRFLQGKCQIILDALAERMKQAVNQLNFEEAAVLRDQIKNLRLIQEQQGVVQ 251 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP---------GGTELSEVVET 298 D DVI + G AC+ + IR+G+VL S+S+FP VP + + E Sbjct: 252 LRGDADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEA 311 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+G +YL ++ +P I+ + ++++ L LS+ G+ +Q PRG ++R++ A Sbjct: 312 FIGFYYLDTTE--RIPDLIITNQSITESRSLEYILSQRRGKSCKIQVNPRGVKSRWMDFA 369 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 N ++ +S+ ST+ R AL +L L + ++RMECFDISHT GE TVASCVVFD Sbjct: 370 VNNLRISVAEYVSKHSTIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDT 429 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 GP +EYRR+NI GITPGDDYAAM Q + RR+ + ID +PDV++IDGGKGQ++ K Sbjct: 430 EGPRPSEYRRFNIEGITPGDDYAAMEQAVTRRFKRLIDAQLLPDVLIIDGGKGQVSIVKR 489 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V L V LLGV+KG RKAG E L E F LP DS ALH++QHIRDE+ Sbjct: 490 VLTSLGV----EDITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHLLQHIRDEA 545 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRKKR K + S+LE+IEGVG KRRQ LL+ GGL+ L A +EEI KV GIS Sbjct: 546 HRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEEICKVQGIS 605 Query: 598 QGLAEKI 604 + LA++I Sbjct: 606 EQLAKRI 612 >UniRef50_A5WBX3 UvrABC system protein C n=3 Tax=Psychrobacter RepID=UVRC_PSYWF Length = 614 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/606 (48%), Positives = 391/606 (64%), Gaps = 16/606 (2%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K +K + + PGVY+M G ++YVGKAK LK R++SYF + KT ALV++I I+ Sbjct: 18 KHLIKRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVSRIHDIE 77 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRG-AKHAK 125 +T +ETEALLLE N IK ++P YNVLLRDDKSY ++F+S D +PRLA RG AKH K Sbjct: 78 TIITRSETEALLLEQNLIKEHRPPYNVLLRDDKSYLYVFISADQPYPRLAYGRGKAKHQK 137 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G++FGPFP+ +A +ETL L+QK+F +RQC N+ +R R RPCL+YQI RC PCV GLVS Sbjct: 138 GKFFGPFPSAHAAKETLVLMQKMFQMRQCTNTFFRQRKRPCLEYQIKRCRAPCV-GLVSA 196 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EEYA V+ FL G + T LI +ME +++ L+FE+AA RDQ+ +R V +Q V Sbjct: 197 EEYAADVQNTIRFLKGDSSDIHTTLIEKMEHSAEALDFEKAAFYRDQLSMLREVQSRQAV 256 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + D+I +A AGM CV+VL +R G+VLG ++YFP V +++ + F+ FY Sbjct: 257 YTVQGEADIISIASQAGMTCVNVLTVRGGRVLGGKNYFPDVDSNEPINDNLSAFITSFYF 316 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 Q + LP EI++ L D+ L ++LS K ++T R RA +L LA+ NA A Sbjct: 317 QVTD--DLPAEIIISHELPDQMALQEALSTYFEAKTVIKTNVREHRAEWLDLAKLNAHNA 374 Query: 366 LTSKLSQQSTVHQRLTALASVLK---LPEVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 L +KL +H R AL VL+ + +ECFDISHTMGE T+ASCVVFD G + Sbjct: 375 LKTKLGDYLELHARFAALKEVLEPVSQSSIDTIECFDISHTMGEATIASCVVFDQGGARK 434 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAEL 482 +YR+Y I G+ GDDYAAM Q + RRY K +PDV+LIDGGKGQL+ AKNV EL Sbjct: 435 RDYRQYAIHGVQDGDDYAAMAQAITRRYKK----HPLPDVLLIDGGKGQLSMAKNVLTEL 490 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 + N LL+GVAKG RKAGLE L F E E LP DS ALH+I +IRDE+H AI Sbjct: 491 GLL---NDTLLIGVAKGEGRKAGLEVLHF-IEHEPLDLPMDSKALHLIMNIRDEAHRFAI 546 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRKKR K +++S LE I G+G KRR+ LL + GGLQ L AS +E+ V GI + +A Sbjct: 547 TAHRKKRDKRRSSSVLEAIPGLGEKRRRDLLNHFGGLQQLLGASQQELEGVNGIGKVMAN 606 Query: 603 KIFWSL 608 I+ L Sbjct: 607 TIYKVL 612 >UniRef50_C6MYN0 Excinuclease ABC subunit n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYN0_9GAMM Length = 620 Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust. Identities = 292/608 (48%), Positives = 388/608 (63%), Gaps = 19/608 (3%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 FL + ++PG+YRM D GTV+YVGKA +LKKR++SYF KT +LV+QI I+++ Sbjct: 13 FLAKLPNEPGIYRMLDQEGTVLYVGKAANLKKRVTSYFNKQNTGVKTRSLVSQIASIEIS 72 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHA-KGE 127 VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ +R K G Sbjct: 73 VTRSETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSEHPDFPRIESYRSKKKPLAGN 132 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 +FGP+P+ AV+ET+ +QK+F IR C +S + RSRPCLQYQI RC PCV + S+E Sbjct: 133 FFGPYPSVTAVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVHYITSDE- 191 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y + V+ FL GK +L +L RME A NL FEEAA +RDQI+ +R V E+Q + Sbjct: 192 YQRSVQDAMRFLQGKSQLILDELAKRMEEAVLNLNFEEAAMLRDQIKNLRLVQEQQGMMQ 251 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP-GGTE--------LSEVVET 298 D D I + G ACV + IR+GK+L S+S+FP VP G E + + Sbjct: 252 LSGDADAIAIEVSPGFACVQCVTIREGKILASQSFFPSVPPNGLEEEPGLDDLWQQTFDA 311 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 FV +YL G+ R +P I+ D L L ++L++ G+ +Q PR ++R++ A Sbjct: 312 FVSFYYL-GTPER-IPPLIITDHALPTHQSLQEALTQQRGKSCKIQVSPRAAKSRWMDFA 369 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 N A+ +++ ST+ R L L L + + RMECFDISHT GE T+ASCVVFD+ Sbjct: 370 LNNLRVAIAEYVNKHSTMRSRFHELERFLALTKPIARMECFDISHTQGEATIASCVVFDS 429 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 GP + YRR+NI GITPGDDYAAM Q + RR+ + ++ +PD+++IDGGKGQ+ A+ Sbjct: 430 EGPNPSAYRRFNIEGITPGDDYAAMEQAITRRFKRLVEAQSLPDILIIDGGKGQVTIAQR 489 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V A L+V+ LLGVAKG RKAG E L E +LP DS ALH++QHIRDE+ Sbjct: 490 VLASLNVTTVT----LLGVAKGPSRKAGWEKLILVHEAREVTLPDDSKALHLLQHIRDEA 545 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRKKR K + S+LE IEGVG KRRQ LL GGL+ L A +EEIAKV GIS Sbjct: 546 HRFAITAHRKKRQKKRLESTLEDIEGVGAKRRQALLHRFGGLRELAKAPLEEIAKVQGIS 605 Query: 598 QGLAEKIF 605 + LA++IF Sbjct: 606 EHLAQRIF 613 >UniRef50_D1RJY2 Excinuclease ABC subunit C n=1 Tax=Legionella longbeachae D-4968 RepID=D1RJY2_LEGLO Length = 631 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 285/608 (46%), Positives = 387/608 (63%), Gaps = 19/608 (3%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 FL + ++PG+YRM D G V+YVGKA +LKKR++SYF KT +LV QI I+++ Sbjct: 21 FLAKLPNEPGIYRMLDESGAVLYVGKAANLKKRVTSYFNKQKTGIKTRSLVTQIASIEIS 80 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRGAKH-AKGE 127 VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ +R K G+ Sbjct: 81 VTRSETEALLLESNLIKTLKPKYNVLLRDDKSYPYIHLSNHPQFPRIESYRSKKKPVSGD 140 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 +FGP+P+ V+ET+ +QK+F IR C +S + RSRPCLQYQI RC PCV +S E+ Sbjct: 141 FFGPYPSSGTVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCV-NYISPED 199 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y + V+ FL GK +L +L RM+ A L FEEAA +RDQI+ +R V E+Q + Sbjct: 200 YKRSVQDAMRFLQGKCQLILDELAKRMDKAVSELNFEEAALLRDQIKCLRLVQEQQGILQ 259 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPG---GTELS------EVVET 298 D D I + + G ACV + IR G++L SRSYFP +P ELS ++ Sbjct: 260 LQGDADAIAIEVNPGFACVQCVTIRDGQILSSRSYFPSLPQYGLDEELSMETLWQQIFSA 319 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+G +YL S+ +P I+ + + ++ L ++LS+ G+ +Q PRG + R++ A Sbjct: 320 FIGFYYLDASE--KIPALIITNHPVDNQKTLQEALSQQRGKSCKLQVNPRGVKLRWMDFA 377 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 N ++ +++ ST+ R L L L E ++RMECFDISHT+GE TVASCVVF+ Sbjct: 378 LNNLRVSVAEYITKHSTMRSRFQELEKFLGLKEPIERMECFDISHTLGEATVASCVVFEQ 437 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 GP YRR+NI GITPGDDYAAM Q + RR+ + ++ +PDV++IDGGKGQ+A A+ Sbjct: 438 EGPCPNLYRRFNIDGITPGDDYAAMEQAITRRFKRLVETQSLPDVLIIDGGKGQVAVAQK 497 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 L++S +LLG+AKG RKAG E L + SLP DS ALH++QHIRDE+ Sbjct: 498 ALLSLNIS----SVILLGIAKGPSRKAGWEKLILVHDSLELSLPDDSRALHLLQHIRDEA 553 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRKKR K + S LE IEGVG KRRQ LL GG++ L A +EEIAKV GI+ Sbjct: 554 HRFAITAHRKKRQKKQMDSVLEDIEGVGRKRRQALLHRFGGIRELAKAPLEEIAKVQGIN 613 Query: 598 QGLAEKIF 605 + LA++IF Sbjct: 614 EHLAKRIF 621 >UniRef50_A5EW70 UvrABC system protein C n=1 Tax=Dichelobacter nodosus VCS1703A RepID=UVRC_DICNV Length = 607 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/608 (46%), Positives = 392/608 (64%), Gaps = 16/608 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD FL V++ GVY+M D GTV+YVGKAK+L++RLS YF+ S KT AL+ + Sbjct: 8 FDPDVFLSHVSTLSGVYQMRDQNGTVLYVGKAKNLRQRLSHYFQKTGLSVKTRALMRAVY 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I T T TE EALLLE+N IK YQP++N+LLRDDKSYP+I LS PRL ++RGA+ Sbjct: 68 DIQTTSTPTEAEALLLENNLIKQYQPKFNILLRDDKSYPYICLSQHDFPRLFLYRGAR-K 126 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G++FGP+PN + LA+LQK+F +R C +S ++NRSRPCLQYQI RC PCV G +S Sbjct: 127 NGDFFGPYPNVQSAHHALAILQKVFRLRPCLDSFFKNRSRPCLQYQIKRCYAPCV-GKIS 185 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E YAQ V++ R FL+G + +L L M AS ++E AA +RDQI +R + +KQ Sbjct: 186 AEMYAQTVQHARDFLTGNSEHLLQTLTEHMLQASAAQQYERAAIVRDQISELRTIQQKQS 245 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + ++DV+ VA G ACV VLF R G + S+++FPK+P +++ F+GQFY Sbjct: 246 MVVYAANVDVLAVATAYGKACVQVLFFRDGHSVTSQAFFPKLPELLPAGAILQAFIGQFY 305 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 Q R +P +I+L L D +++ LS+++ + + T+PR R ++L++ + NA Sbjct: 306 HQ----RPVPSQIVLSEALPDMDAVSEFLSQMSAHTVTLTTQPRAIRKKWLRMTQENARL 361 Query: 365 ALTSKLSQQSTVHQRLTALASVL---KLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L L+Q+ ++H+R ALA K+P+ R+EC DISH GE TVASCVVFD G + Sbjct: 362 NLRLHLAQKLSMHERFKALAQAFDWQKMPQ--RLECVDISHMQGEYTVASCVVFDRRGAV 419 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFA 480 +++YRRY I GIT GDDYAAM QV++RR+ + + +PDV +DGG+GQL QA VF Sbjct: 420 KSDYRRYKINGITGGDDYAAMKQVIKRRFARLKKGEGVMPDVFFVDGGRGQLQQAIAVFE 479 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 E+ + + L+GVAKG RKAGLE +F E +LP DS A+ +I HIRDE+H Sbjct: 480 EMQIEGVQ----LIGVAKGEGRKAGLEQFWFPHENRPRTLPADSQAMQLIIHIRDEAHRF 535 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HR+ R K S LE I +G KRRQ LL++ G L GL AS E+I +VPGIS L Sbjct: 536 AISAHRRGRDKKVRVSLLEEIPNIGRKRRQALLQHFGNLAGLMQASPEDITRVPGISVKL 595 Query: 601 AEKIFWSL 608 A +I+ +L Sbjct: 596 AAQIYAAL 603 >UniRef50_A6SXR9 UvrABC system protein C n=19 Tax=Betaproteobacteria RepID=UVRC_JANMA Length = 618 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 298/626 (47%), Positives = 411/626 (65%), Gaps = 31/626 (4%) Query: 2 SDQFDAKAF-LKTVT---SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 +D D +A L+TV + PGVYR +DA ++YVGKA+DLKKR+SSYF NLAS +T Sbjct: 4 TDAPDPRAIVLETVAKLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNLASPRTA 63 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAM 117 +V +I +++ TVT +E EALLLE+N IK QPRYN+L RDDKSYP++ ++G +PR+A Sbjct: 64 LMVERIARLETTVTRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQEYPRMAY 123 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 +RGA K +YFGPFP+G+AV+E++ +LQK+F +R CE+SV+ NR+RPCL +QI RC GP Sbjct: 124 YRGAVDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSGP 183 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 CV +S+E+YA VE FL G+ +VL L +M ++ L+FE+AA +R+QI A+ Sbjct: 184 CV-NFISKEDYALDVENAAKFLRGRQSEVLETLQGKMLAYAEELKFEQAALVRNQINALS 242 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK-----VPGGTE 291 RV +Q + GD D+D+I V G ACV++ +R G+ LG R+YFP + E Sbjct: 243 RVLHQQSMETGGDADIDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALASAEE 302 Query: 292 --LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 +EV++ F+ Q Y++ + +PG ++L+ + + L+ +L E G +INV +P+G Sbjct: 303 SIATEVMKAFLAQHYIE----KFIPGTLILNTEMDEPELML-ALMEQCGHRINVVFQPQG 357 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVL--KLPEVK--RMECFDISHTMG 405 R ++L++A A +L LS+Q + R L L +P+++ R+ECFDISHT G Sbjct: 358 QRRQWLEMAHKGAEISLARLLSEQGSQQARTRMLVDALGIDVPDLESFRVECFDISHTQG 417 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVIL 464 E T ASCVVF + EYRRYNI ITPGDDYAAM QVL RRY K + D +PDV+L Sbjct: 418 EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLLRRYEKVANGDGVMPDVVL 477 Query: 465 IDGGKGQLAQAKNVFAE--LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 IDGGKGQ+ A+ VF E LD+S L++GVAKG RK GLETL F L Sbjct: 478 IDGGKGQVEMARQVFVELGLDIS------LIVGVAKGEGRKVGLETLVFVDGRPPQELGK 531 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGL 582 +S AL +I IRDE+H AI G R KRAK + TS LE IEG+G KRRQ LL GGL+G+ Sbjct: 532 ESGALMLIAQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGV 591 Query: 583 RNASVEEIAKVPGISQGLAEKIFWSL 608 +AS+E++A V GIS+ LAE I+ L Sbjct: 592 VDASIEDLASVEGISRQLAEDIYKQL 617 >UniRef50_B5EPN1 Excinuclease ABC, C subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPN1_ACIF5 Length = 623 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 276/600 (46%), Positives = 392/600 (65%), Gaps = 13/600 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 FL+T+TSQPG+Y+M+ G ++YVGKA++L++R+SSYF+ + KT A++AQ+ +++V Sbjct: 25 FLRTLTSQPGIYQMFGQGSRLLYVGKARNLRRRVSSYFQKQRHTPKTLAMLAQVTRVEVV 84 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEY 128 VTHTETEAL+LE N IK + P YN+LLRDDKSYP++F+ +G PR+++HRGA+ KG Y Sbjct: 85 VTHTETEALVLEANLIKRHHPPYNILLRDDKSYPYLFIETGHGTPRMSLHRGAQKGKGHY 144 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGP+P A+RE++ LLQK F +R CE+ + +RSR CLQ+QI RC GPCV G +S E+Y Sbjct: 145 FGPYPAVTALRESMVLLQKAFRLRTCEDHTFHHRSRACLQFQIRRCSGPCV-GHISGEDY 203 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 A+ V FL GK D+ + L RM+ A++ L+FEEAAR RDQI A+ ++ E+Q+V+ Sbjct: 204 ARDVADTIRFLEGKSDEAIRSLGERMQAAAEQLDFEEAARRRDQIAALSKIQERQYVAQA 263 Query: 249 -GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 G D DV+ A + G V+V FIR G+ LG RS FP+ +V+ F+ QFY Sbjct: 264 GGGDFDVLAAAQENGQWVVYVSFIRNGRQLGGRSVFPRHTEEVRAPDVLAAFLMQFYSD- 322 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +PG +L++ T LA++L AG ++ + RG R R++ LA TNA AL Sbjct: 323 ---KEVPGNLLVNVLPRSPTSLAEALGSEAGHRVMIDQPQRGPRKRWMALALTNAMGALR 379 Query: 368 SKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 + +R+ L + +LPE+ +R+ECFDISHT GE VASCVVF +G L+ EYR Sbjct: 380 QRTQTAGAGRRRMLLLQELFQLPEIPQRVECFDISHTRGEVAVASCVVFGDDGALKNEYR 439 Query: 427 RYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVS 485 R+NI I GDDYAAM Q + RRYG+ + +P+++ IDGG GQ+A+A+ L++ Sbjct: 440 RFNIRDIRGGDDYAAMEQAVHRRYGRLQKEGLALPEIVFIDGGAGQVARAQAALDALEIG 499 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 + L GVAKG R+ GLE L L D PAL VIQ IRDE+H AI GH Sbjct: 500 CIQ----LCGVAKGTTRRPGLEMLHIPGWAVPRQLDDDDPALLVIQEIRDEAHRFAITGH 555 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 R +R K + S L+ I G+GPKRR LL+ GGL+G+R+A +E++ +V GI LA++I+ Sbjct: 556 RARRGKARQESDLDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLELAQRIY 615 >UniRef50_A1AWP2 Excinuclease ABC subunit C n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AWP2_RUTMC Length = 594 Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust. Identities = 288/607 (47%), Positives = 385/607 (63%), Gaps = 28/607 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LK +T+ PGVY+M+D VIYVGKAK+LK R+SSYF K LVA I+ V V Sbjct: 7 LKNLTTNPGVYQMFDKQDQVIYVGKAKNLKNRVSSYFVKTHEQNKARVLVANIKDFKVIV 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T TET+ALLLE IK + PRYN+LL+D KSYP+IF+S D HPR+ +RG K +YFG Sbjct: 67 TATETQALLLESELIKQHMPRYNILLKDSKSYPYIFISHDKHPRVGFYRGKKCQSAQYFG 126 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+P+ + VR++L+LL+KIF +RQC NS YR+RSRPCL+YQIG C PCV +S+E Y Sbjct: 127 PYPSAHVVRDSLSLLKKIFKVRQCTNSTYRSRSRPCLEYQIGLCSAPCVNK-ISDENYQS 185 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 V + LFLSGK + L ++ +M+ AS+NLEFE AAR+RDQ+ +R + E Q S++ + Sbjct: 186 DVLMMSLFLSGKGRETLERVSKKMQLASKNLEFELAARLRDQLIDLRTIQE-QHTSSSSN 244 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 DLDV+ +A G+ V VLFIR GK +G PK ++ +V+ F+ +YL Sbjct: 245 DLDVVSIAQQDGVNGVEVLFIRSGKQIGQVFILPKNSNNQDIKQVLSAFLPLYYLG---- 300 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL----ARTNAATAL 366 + P +IL+ LSDK ++A +L+ ++ P D+ YL + A+ N L Sbjct: 301 KNTPKQILISHKLSDKKIIASALNT------HIIDTPNKDKKHYLNIANLTAKENLNQNL 354 Query: 367 TSKLSQQST-VHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 SK ++ST VH L + + KLP +ECFDISH MGE TVASCVVF+ P ++Y Sbjct: 355 LSKFRKKSTLVH--LQVILGLGKLPNY--IECFDISHMMGEATVASCVVFEKGVPKASQY 410 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDV 484 R+++I I PGDDYAAMNQV+ RRY K + D K +PD+I IDGG GQ QA V + V Sbjct: 411 RQFDIKNIIPGDDYAAMNQVVYRRYSKLLKDKKPLPDIIFIDGGLGQFNQAIMVMNSIGV 470 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFF--EPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 + L+G+AKG +RKAGLETL + +L P PAL ++ HIR+ESH AI Sbjct: 471 ----DDVQLVGIAKGENRKAGLETLITIKDDNVNKINLLPYDPALMLVNHIRNESHRFAI 526 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRKKRA + TS LE+I+GVG RR LL Y GGLQ ++ AS+ EI KV GI+ LA Sbjct: 527 KNHRKKRASRRTTSILESIKGVGKLRRMALLNYFGGLQEIKKASIHEIQKVSGINLVLAT 586 Query: 603 KIFWSLK 609 KI +K Sbjct: 587 KIVKKIK 593 >UniRef50_B0VLX1 UvrABC system protein C n=17 Tax=Moraxellaceae RepID=UVRC_ACIBS Length = 599 Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust. Identities = 276/601 (45%), Positives = 393/601 (65%), Gaps = 17/601 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 L +T PGVY+M G ++YVGKAK+LK R+SSYF + KT+ALVA+I I+ Sbjct: 12 ILANLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETL 71 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRG-AKHAKGE 127 VT +ETEALLLE N IK ++P YN++LRDDKSY +IF+S D +PR+A RG KH G+ Sbjct: 72 VTRSETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGK 131 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 +FGP+P+ Y+ R+TL +LQK+F +RQCENS + R RPCLQYQI RC PCV GLVS E+ Sbjct: 132 FFGPYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCV-GLVSPED 190 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y + V FL G ++ +LI++ME A+ +LEFE+A RD++ +R V +Q V Sbjct: 191 YKEDVNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFK 250 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 + D++ + + AG+ CV ++ +R G++LG +SYFP + G +L +++ F+ FY Q Sbjct: 251 VKGEADILAITYQAGVTCVQIMHVRNGRMLGGKSYFPDML-GDDLGQMLSDFMANFYFQV 309 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P E++++ L D+ L ++L++ G+K+ +++ R RA +L+LA N A+ Sbjct: 310 AD--EVPSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIK 367 Query: 368 SKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 +LS +++R L V+ P + R+ECFDISHTMGE +ASCVVFD G + +YR+ Sbjct: 368 GQLSNHLELNERFHQLEQVVGRP-IDRIECFDISHTMGEAPIASCVVFDQGGARKRDYRQ 426 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWD 487 + I IT GDDYAAM Q L RRY KA+ +PD++LIDGGKGQL A V EL + Sbjct: 427 FAIQDITAGDDYAAMRQALTRRYKKAM----LPDLLLIDGGKGQLHMAMEVMQELGLE-- 480 Query: 488 KNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 547 ++GV+KG RK GLETL F +G LP DS ALH+IQ +RDE+H AI HR Sbjct: 481 ---AFMVGVSKGEGRKPGLETLHF-TDGTKIQLPEDSKALHLIQQVRDEAHRFAITKHRA 536 Query: 548 KRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 KR K ++TS LE I G+GPKRR+ LL + GG+QG+ AS +E+ VPG+ + +A I+ Sbjct: 537 KRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEVMARTIYKI 596 Query: 608 L 608 L Sbjct: 597 L 597 >UniRef50_C6NXT8 Excinuclease ABC subunit C n=2 Tax=Gammaproteobacteria RepID=C6NXT8_9GAMM Length = 624 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 284/611 (46%), Positives = 397/611 (64%), Gaps = 25/611 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD K FL+++ SQPGVY+M A G ++YVGKA++LK+R+SSYF+ S KT A++AQ+ Sbjct: 19 FDLKLFLRSLGSQPGVYQMLAADGHILYVGKARNLKRRVSSYFQKTRHSPKTLAMLAQVA 78 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKH 123 +++V VTHTETEAL+LE IK ++P YN+LLRDDKSYP++++ + PR+++HRG + Sbjct: 79 RVEVLVTHTETEALVLEAQLIKKHRPHYNILLRDDKSYPYLYIDTSSAFPRMSLHRGTQR 138 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 KG YFGP+P A+RE++ LLQK F +R CE+SV+ NRSR CL YQI RC GPCV G + Sbjct: 139 GKGHYFGPYPAVSALRESMVLLQKAFRLRTCEDSVFHNRSRACLHYQIRRCSGPCV-GHI 197 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 E+ Y + ++ FL GK D+ + L RM A++ L+FEEAAR RDQI A+ ++ E+Q Sbjct: 198 DEKSYHRDLQDALRFLQGKSDEAIRTLQQRMLAAAERLDFEEAARRRDQIAALSKIQERQ 257 Query: 244 FVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 +V+ G D DV+ G V V FIR G+ LG R+ FP+ P SEV+ F+ Q Sbjct: 258 YVAQAGGGDFDVLAAVEADGQWVVFVTFIRHGRQLGGRAIFPQHPDTARGSEVMAAFLMQ 317 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y R +PG +L++ LA +L + AGRK+ ++ RG R R+L +A NA Sbjct: 318 YYAD----REIPGNVLVNVLPRAAASLASALGQNAGRKVLLEQPQRGPRRRWLAMAVANA 373 Query: 363 ATALTSKLSQQSTVHQR---LTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANG 419 AL + + +R L L S+ +LPE R+ECFDISHT GE ASCVVF +G Sbjct: 374 NEALRQRAQRADGGRRRMRLLQELFSLDRLPE--RVECFDISHTRGEAATASCVVFGEDG 431 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 L+AEYRR+N+ ITPGDDYAAM Q + RRYG+ + + +PD++ IDGG Q+A+A+ Sbjct: 432 ALKAEYRRFNLRDITPGDDYAAMEQAVSRRYGRLLQEGLSLPDIVFIDGGPAQVARAQAA 491 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLE----TLFFEPEGEGFSLPPDSPALHVIQHIR 534 +L + LL GVAKG R+ GLE TL+ +P L PAL VIQ IR Sbjct: 492 LDDLGI----REILLCGVAKGTSRRPGLEWLHTTLWTQPR----QLSSGDPALLVIQEIR 543 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE+H AI GHR +R+K + S L++I G+GPKRR LL+ GGL+G+R+A VE++ +V Sbjct: 544 DEAHRFAITGHRARRSKARQESELDSIGGIGPKRRVALLRAFGGLRGIRDAGVEDLQRVE 603 Query: 595 GISQGLAEKIF 605 GI LA++I+ Sbjct: 604 GIHAELAQRIY 614 >UniRef50_Q1LKN9 UvrABC system protein C n=32 Tax=Proteobacteria RepID=UVRC_RALME Length = 673 Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust. Identities = 293/655 (44%), Positives = 395/655 (60%), Gaps = 61/655 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD + L + PGVYR +DA G ++YVGKA+DLKKR+SSYF S + +VA+I Sbjct: 28 FDPRPILARMPGLPGVYRYFDADGNILYVGKARDLKKRVSSYFNKTQLSPRIAMMVAKIA 87 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +ID TV TE EALLLE+N IK PRYN+L RDDKSYPF+ L+G PR+A +RGA Sbjct: 88 RIDTTVVRTEAEALLLENNLIKALAPRYNILFRDDKSYPFLRLTGHKFPRMAYYRGATDR 147 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 K +YFGPFP+ +AVRE++ +LQK+F +R CE++V+ NR+RPCL +QI RC GPCV G +S Sbjct: 148 KHQYFGPFPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCV-GAIS 206 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E++YA+ V FL G++ +VL L S+ME + LEFE+AA +RDQI A+ V ++Q Sbjct: 207 EDDYARDVSNAARFLQGRETEVLEGLQSKMEAHAVQLEFEQAAAVRDQIAALSTVLKRQA 266 Query: 245 VSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP------------------ 284 V G D+D++ VA G ACV++ +R G+ LG ++YFP Sbjct: 267 VEEVGQARDIDILAVAVQGGRACVNLAMVRGGRHLGDKAYFPAHVDEAAMIVEEGDEADG 326 Query: 285 -----------KVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSL 333 ++P + V+ F+ Q YL + P I++ + + L ++L Sbjct: 327 SAHEGAAADTDQLPIDRIAARVLSAFMVQHYLDQA-----PPPIVVVSHRPADSALVEAL 381 Query: 334 SELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP--- 390 S AGRKI + +P+G R +L++A A AL +L++Q + R ALA + L Sbjct: 382 SMQAGRKITLVRQPQGQRKTWLEMAAQGAGLALARRLAEQGSQEARTRALAETIGLDLED 441 Query: 391 -EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRR 449 R+ECFDISHT GE T ASCVVF + +EYRRYNI ITPGDDYAAM QVL RR Sbjct: 442 LATLRIECFDISHTAGEATQASCVVFHHHEMQNSEYRRYNIADITPGDDYAAMRQVLTRR 501 Query: 450 YGKAIDD----------------SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 Y K ++ ++P V+LIDGGKGQ+ A+ VF EL + LL Sbjct: 502 YQKLVEQLQEAGGDPAGDGGDGVPRMPRVVLIDGGKGQVEVARQVFEELGLDIG----LL 557 Query: 494 LGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 +GVAKG RK GLETL F L S AL ++ IRDE+H AI G R +RAK + Sbjct: 558 VGVAKGEGRKVGLETLVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKAR 617 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 TS LE IEGVG +RRQ LL GGL+G+ AS++E+A V GIS+ LAE+I+ L Sbjct: 618 TTSRLEEIEGVGARRRQKLLTRFGGLRGVMAASIDELASVEGISRTLAEEIYRQL 672 >UniRef50_UPI0000E87CD9 excinuclease ABC, C subunit n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87CD9 Length = 580 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 272/586 (46%), Positives = 385/586 (65%), Gaps = 13/586 (2%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 82 M + +IY+GKAKDLKKR+ SYF S +T +V I I+ TVT+TE EAL+LE+ Sbjct: 1 MLNKAEDIIYIGKAKDLKKRVLSYFNKTQPSPRTRLMVGSIASIEFTVTNTEAEALILEN 60 Query: 83 NYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETL 142 N I+ + PRYNV+ RDDKSYP++ ++GD PR+ HRG + +YFGPFPN AVR+++ Sbjct: 61 NMIRSFMPRYNVIFRDDKSYPYLAITGDKFPRIRFHRGLQKIDTKYFGPFPNSNAVRQSI 120 Query: 143 ALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGK 202 LLQK+F +R CENSV+ NRSRPCL++QI RC PCV GL+ E+EY V LFL GK Sbjct: 121 QLLQKVFMLRTCENSVFNNRSRPCLEHQIKRCTAPCV-GLIEEDEYGADVNQANLFLDGK 179 Query: 203 DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN-TGDDLDVIGVAFDA 261 D +V+ L +M S+ FE AA RD+IQ++R+V KQFVS+ + +D D+I A + Sbjct: 180 DSEVIGNLTKKMNEQSEAFNFERAAIFRDRIQSLRQVRLKQFVSDFSENDADIIAFAEAS 239 Query: 262 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 321 G C +V+ IR G+ LG +++FPK G +++TF+ Q+Y + P I+ + Sbjct: 240 GKICANVVMIRGGRHLGDKTFFPKNHDGHIEESIIDTFITQYY----DLHKPPPVIVTEN 295 Query: 322 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 381 +S++ L+ + + K+ + ++ GD+ +L +A+ NA +L K ++Q++ +RL Sbjct: 296 KVSNE-LVKEFFAIKQYGKVRLLSRLTGDKKNWLLMAKKNAQISLEQKNNEQASQVERLL 354 Query: 382 ALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYA 440 AL ++L LP+ V R+EC+DISHTMGE TV SCVV+D +YR+YNI ITPGDDY Sbjct: 355 ALRALLGLPDHVNRIECYDISHTMGESTVGSCVVYDKYEMQNKDYRKYNIKNITPGDDYG 414 Query: 441 AMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKG 499 AM QVL RR+ + ++ I PD++LIDGGKGQ AK + + ++ L+GV+KG Sbjct: 415 AMKQVLERRFKRMAEEDAIKPDLVLIDGGKGQFGVAKKIMEDNGIT----DIYLVGVSKG 470 Query: 500 ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLE 559 ADRKAG E L + ++ P+ H+IQHIRDESH AI GHR KRAK + +SS+E Sbjct: 471 ADRKAGKEKLIIGEDKVLDTVNPEDLGFHLIQHIRDESHRFAITGHRAKRAKNRMSSSIE 530 Query: 560 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 +EGVG K+R+ LL Y GGL+G++NA VEE+ V GI+ LAEKIF Sbjct: 531 EVEGVGAKKRKSLLVYFGGLEGVKNAPVEELMLVEGINARLAEKIF 576 >UniRef50_A0Q5Q7 UvrABC system protein C n=18 Tax=Francisella RepID=UVRC_FRATN Length = 612 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 266/614 (43%), Positives = 393/614 (64%), Gaps = 12/614 (1%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 S FD K+FL +T+ GVYRM D G +IYVGKAK+LK R++SYF KT +V Sbjct: 6 SKDFDLKSFLANLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVE 65 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG- 120 QI +I++T+T ++ EA LLE+N IK ++P+YN+L +DDKSYP++ +S D PR++ +RG Sbjct: 66 QIARIEITITPSDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVISRDKFPRVSFYRGK 125 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + + KG+ FGP+ + +V+ TL +QKIFPIRQCENS Y++R RPCLQYQI RCL PCV Sbjct: 126 SAYKKGQCFGPYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCV- 184 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GLVS+++Y +Q+ ++ FL+GK VL ++ ++M AS+++E+E+A RDQ+ +R++ Sbjct: 185 GLVSQQQYDEQLAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQ 244 Query: 241 EKQFVSNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 ++Q V D DVIG+ A + +L I+ G V+ R + G + S ++ F Sbjct: 245 QQQIVDIQEDKTFDVIGIYMQDSYASIALLQIQNGDVVADRHWSIDAKGQDKTS-IMHAF 303 Query: 300 VGQFYLQGSQMRTL-PGEILLD-FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 + FYL G ++R + P I+L +D T L +S+S+ G+ IN P D ++LKL Sbjct: 304 LSHFYL-GDEIRNIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKL 362 Query: 358 ARTNAATALTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFD 416 A NA L S +S +RL +L L+L ++KR+ECFDISH GE T+ASCVV+ Sbjct: 363 AEVNARQKLNIYTSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYT 422 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAK 476 G R +RRYNI I GDDYAA+ Q + RR ++ +PDV++IDGGKGQ+ QA+ Sbjct: 423 DEGEDRKSHRRYNIKDIKAGDDYAAIYQAVSRRVSSGLEADNLPDVMIIDGGKGQIHQAE 482 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 VF E + ++ L+ + KG +R +G E ++ + ++L +P +++ +RD Sbjct: 483 AVFREFGI---QDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVRDS 539 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +HDHAI G RKK + + +S +E IEGVGPKRR+ L+ Y GG Q L ASV+EIAKV GI Sbjct: 540 AHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVKGI 599 Query: 597 SQGLAEKIFWSLKH 610 S+ LA++I W H Sbjct: 600 SKKLAQEI-WECFH 612 >UniRef50_A0L8U4 Excinuclease ABC subunit C n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8U4_MAGSM Length = 617 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 260/604 (43%), Positives = 376/604 (62%), Gaps = 16/604 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVAQIQQIDV 68 +K + +PGVYR YD G ++YVGKAK L+KR+SSYF ++LA S KT +V QI +++ Sbjct: 19 VKQLPLKPGVYRFYDDAGQLLYVGKAKALRKRVSSYF-NHLAGHSPKTVVMVKQIMRLEF 77 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKGE 127 T T E +AL+LE N IK +QPRYNVLL+D+KSYP++ L+ D +PRLA++RG + A+G Sbjct: 78 TTTANENDALVLEANLIKAHQPRYNVLLKDNKSYPYLHLTTDHAYPRLALYRGDRKARGR 137 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 +FGP+P+ +AVRETL LQKIFP+RQCE+S + +RSRPCLQYQI RC GPC + + Sbjct: 138 FFGPYPSAHAVRETLNWLQKIFPVRQCEDSQFNHRSRPCLQYQIHRCGGPCCDR-IDVTS 196 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y V V LFL GKD Q++ L M A+Q +FE AAR+RD+I + V E++ ++ Sbjct: 197 YGAMVSQVTLFLEGKDKQLVNTLKEAMWQAAQARDFEGAARLRDRIAGIEHVQERRRLNL 256 Query: 248 TGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 +G+ DLDV+ VA A V V FIR G LG+R++F + + SE+++ FV QFYL Sbjct: 257 SGEIDLDVMSVAVGLKKAVVQVFFIRAGINLGNRAFFLERGEEDDPSEILQAFVSQFYLD 316 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + P EILL+ + +L ++LS G+ + ++ RG+R R L++A NA AL Sbjct: 317 ----KPPPPEILLEHLPQQQEMLEEALSARLGKAVKLRQPQRGERRRLLEMAVENAQQAL 372 Query: 367 TSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 S + V +L AL + L E +R+E +D SH + V + VVF A+G + +Y Sbjct: 373 KQYQSSRDHVRTQLEALQELFNLAEPPQRIEIYDNSHIQDQHAVGAMVVFGADGFEKNQY 432 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAELDV 484 R++N+ + DD A M +VL RR+ + + + + PD++L+DGG QL A V EL + Sbjct: 433 RKFNLEASSAPDDTARMIEVLTRRFKRLKEGEGRWPDLVLLDGGIAQLNAAMKVVEELQI 492 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 + +AKG R AG E LF LP D+P LH +Q +RDESH IG Sbjct: 493 ----DGVAFSAIAKGPQRHAGREQLFLPDRPNPLILPHDAPLLHFLQVVRDESHRFVIGY 548 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 HR +RAK + +S L+ I GVG +R++ L+K G ++G+R A++ EIA +PG S LA I Sbjct: 549 HRTRRAKGQTSSRLDGIAGVGAQRKKALIKQFGSVKGVRQATLAEIAALPGFSTELAATI 608 Query: 605 FWSL 608 +L Sbjct: 609 LATL 612 >UniRef50_A1WLD5 UvrABC system protein C n=17 Tax=Burkholderiales RepID=UVRC_VEREI Length = 685 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/688 (39%), Positives = 381/688 (55%), Gaps = 97/688 (14%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDV 68 A + + + PGVYR +D+ G ++YVGKA+ LK+R++SYF N + +V +I +++ Sbjct: 8 AQVAALPALPGVYRYFDSQGLLLYVGKARHLKRRVASYFTKNHGGTRIGHMVCKIARLET 67 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS------------GDTHPRLA 116 TV +E EALLLE+N IK PR+N+L RDDKSYP++ ++ G PR+A Sbjct: 68 TVVRSEAEALLLENNLIKTQNPRFNILFRDDKSYPYLKITGAPASSAGRDAPGQRFPRIA 127 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 +RGA + YFGP+P+ +AV+E++ LLQK+F +R CE++V+ NR+RPCL YQI RC G Sbjct: 128 YYRGAVDKQHRYFGPYPSAWAVKESIELLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSG 187 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PCV L++ E YA V++ + LSG+ ++L + +RM S L FE+AA +R+Q+QA+ Sbjct: 188 PCVN-LIAPEAYAVDVQHAQALLSGQTQELLQAMEARMMAYSGQLAFEQAAEVRNQMQAL 246 Query: 237 RRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE- 294 RV +Q + + D D+D++ V G ACV++ +R G+ LG R YFP L E Sbjct: 247 SRVLHQQSIESAHDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPTHLEDAALFEQ 306 Query: 295 -------------------VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSE 335 V+E FV Q Y M P +L+ DK LL Sbjct: 307 ETRDAEEAPATPPRPVEALVLEAFVAQHY-----MVVAPPPVLVTSTPLDKALLEALSGH 361 Query: 336 LAGRK-----------------------------INVQTKPRGDRARYLKLARTNAATAL 366 L + I +PR R +L++A+ NA L Sbjct: 362 LTAAQGGDHAPAAQGGDPPPAASSGGHPLRGTVHITAVHQPREQRRAWLEMAQKNADLQL 421 Query: 367 TSKLSQQSTVHQRLTALASVLKLP----EVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 L+Q+ + R ALA L LP + +ECFDISHT GE T ASCVVF + Sbjct: 422 ARLLAQEGSQQARTRALAEALDLPLADLDPLTIECFDISHTAGEATQASCVVFHHHKMQS 481 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGK--------------------AIDDSKIPDV 462 +EYRRY I GIT GDDYAAM QVL RRYGK A +++PD+ Sbjct: 482 SEYRRYKIDGITGGDDYAAMRQVLTRRYGKLAEAAHEAGGVDCAARPAAPAQGQARLPDL 541 Query: 463 ILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 +LIDGGKGQ+ A+ VF L + + ++GV KG RK GLE L F E SL Sbjct: 542 VLIDGGKGQVGVAREVFTALGLDLTR----IVGVEKGEGRKVGLEELVFADGREKASLGK 597 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS-LETIEGVGPKRRQMLLKYMGGLQG 581 DS AL ++ IRDE+H AI G R RA+V+ L+ I GVGPK+R LL+ GG++G Sbjct: 598 DSAALMLVAQIRDEAHRFAITGMRAARARVRTGGGQLQEIAGVGPKKRARLLQRFGGVRG 657 Query: 582 LRNASVEEIAKVPGISQGLAEKIFWSLK 609 + +ASVE++ V GIS+ LAE+I+ +L+ Sbjct: 658 VASASVEDLITVDGISRALAEEIYRALR 685 >UniRef50_B4RF25 UvrC, excinuclease ABC, C subunit n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RF25_PHEZH Length = 662 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 252/608 (41%), Positives = 371/608 (61%), Gaps = 25/608 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 ++ + +PGVYRM G V+YVGKA+ LKKR+ Y + +++ +V + ++ Sbjct: 61 VRRLPDRPGVYRMIGEDGEVLYVGKARSLKKRVLQYAQGRFHTQRIAHMVDLTRAMEFVT 120 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKGEYF 129 T TET+ALLLE N IK +PR+NVLLRDDKS+P I + D P+L HRGA KG+YF Sbjct: 121 TRTETDALLLEINLIKQLKPRFNVLLRDDKSFPEIVIRRDHAAPQLRKHRGAHSIKGDYF 180 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + +AV TL LQK F +R C +SVY R+RPC+ +QI RC PC GL+S E+Y Sbjct: 181 GPFASAWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIRRCSAPCT-GLISLEDYN 239 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT-EKQFVSNT 248 V+ FL GK V+ ++ M+ A+++LEFE AAR+RD+I+A+ V E+Q T Sbjct: 240 ALVDEAGAFLRGKSRAVMERMAGEMQAAAEDLEFERAARLRDRIRALASVAQEQQINPET 299 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D+ DV + + G ACV V F R G+ G+R+YFP+V E +V+ F+GQFY Sbjct: 300 VDEADVFALHAEGGQACVQVFFFRAGQNWGNRAYFPRVDKSDEDPDVMGAFLGQFY---- 355 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 + +P IL++ ++ LL+++ + +GRK+ + RG++ + ++ A TNA AL Sbjct: 356 DDKPIPRMILVNVVPAECELLSEAFCQKSGRKVEISRPQRGEKRQIVQHALTNAREALGR 415 Query: 369 KLSQQSTVHQRLTALASVLKL---PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 K+++ S + L + L PE R+E +D SH MG V +V G +++Y Sbjct: 416 KMAESSAQSKLLAGVCEAFGLEGSPE--RIEVYDNSHIMGTNAVGGMIVAGPEGFQKSQY 473 Query: 426 RRYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQAKN 477 R++NI + +TPGDDY M +VLRRR+ + + + + PD++LIDGG+GQL A Sbjct: 474 RKFNIRSSELTPGDDYGMMREVLRRRFSRLVKEEEEGGEAVRPDLVLIDGGRGQLDAAME 533 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V A+L V + P++ GVAKG DR AGLE FF P E F L P SP L+ +Q +RDE+ Sbjct: 534 VMADLGVD---DIPVV-GVAKGPDRDAGLER-FFMPGKEPFMLEPKSPVLYYLQRLRDEA 588 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AIG HR +RA + L+ I+GVGP R++ LL G +G+ ASV ++AKV G+S Sbjct: 589 HRFAIGSHRTRRAMDMKKNPLDEIDGVGPGRKRALLHTFGSARGVSRASVADLAKVEGVS 648 Query: 598 QGLAEKIF 605 + LA++I+ Sbjct: 649 EALAQRIY 656 >UniRef50_B6INU7 Excinuclease ABC, C subunit, putative n=18 Tax=cellular organisms RepID=B6INU7_RHOCS Length = 694 Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust. Identities = 248/608 (40%), Positives = 363/608 (59%), Gaps = 20/608 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K +L+T+ +PGVYRM A G V+YVGKA++LK+R+++Y + + + +VA+ ++ Sbjct: 90 KGYLRTLPDRPGVYRMLSAEGDVLYVGKARNLKRRVTNYTQVAKLPVRLQRMVAETVTME 149 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKG 126 THTE EALLLE N IK PRYNVLLRDDKS+P I ++GD P+L HRGA+ G Sbjct: 150 FVTTHTEVEALLLESNLIKRLMPRYNVLLRDDKSFPHILITGDHPFPQLTKHRGARDRAG 209 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 Y+GPF + AV + LQ+ F IR C ++V+ +R+RPCLQ+QI RC PCV G V + Sbjct: 210 SYYGPFASAGAVNRVMTALQRAFQIRTCTDTVFASRTRPCLQFQIKRCTAPCV-GRVGDA 268 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 YA QV + FLSG+ +V +L M+ A++ LEFE AA++RD+I+A+ + Q ++ Sbjct: 269 GYAAQVAEAKSFLSGRSSEVQARLARAMQDAAEALEFETAAKLRDRIRALTAIQAHQDIN 328 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 G +D DVI D G+ C+ V F R G+ G+R+YFP + EV+ FV QFY Sbjct: 329 VEGVEDADVIAAHQDGGVTCIQVFFFRGGRNYGNRAYFPSHDKAQDTPEVLSAFVAQFY- 387 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + + P +L+ +L + LL ++LS AG ++ + RGD+ R + A TNA A Sbjct: 388 ---ENKAAPELVLVSEDLPEHALLQEALSVRAGHRVALVAPKRGDKRRVVDHALTNAREA 444 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 +L++ + + L +A V L E +R+E +D SH G V +V G L++ Sbjct: 445 HGRRLAESGSQAKLLAGVAEVFGLAEPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSA 504 Query: 425 YRRYNITG-ITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQAKN 477 YR++NI GDDYA M +VL RR+ +A+ + PD++LIDGG+GQLA A Sbjct: 505 YRKFNIKDPAAAGDDYAMMREVLTRRFERALKEDPERTGGTWPDLLLIDGGEGQLAVALE 564 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V AEL + + L G+AKG DR AG E FF P F L P SP L+ +Q +RDE+ Sbjct: 565 VLAELGI----DDVPLAGIAKGPDRDAGRER-FFLPGRPPFGLDPKSPVLYYLQRLRDEA 619 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AIG HR +R K S L+ I G+GP+R++ LL + G + + A ++++A V GIS Sbjct: 620 HRFAIGTHRARREKALGASPLDEIAGIGPRRKKALLHHFGSARAVSRAGLQDLASVEGIS 679 Query: 598 QGLAEKIF 605 + +A I+ Sbjct: 680 EAVARIIY 687 >UniRef50_Q21AW5 UvrABC system protein C n=89 Tax=Alphaproteobacteria RepID=UVRC_RHOPB Length = 699 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 247/615 (40%), Positives = 356/615 (57%), Gaps = 30/615 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 ++ + PGVYRM +A V+YVGKAK++KKRL+SY R + ++A +++ Sbjct: 87 VRLAPTSPGVYRMLNAASDVLYVGKAKNVKKRLASYARPTGHVVRISRMIAATVSVEIIS 146 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKGEYF 129 T TETEALLLE N IK +PR+NVLLRDDKS+P+I ++GD P++ HRGA+ G YF Sbjct: 147 TATETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQIIKHRGAQSRPGRYF 206 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + +V T+ LQ+ F +R C ++ + +R+RPCL YQI RC GPC G + Y Sbjct: 207 GPFASVGSVNRTITALQRAFLMRSCTDAFFESRTRPCLLYQIKRCAGPCT-GEIDFPGYT 265 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS-NT 248 V FLSG+ V +L ME AS LEFE AA RD++ A+ + +Q ++ T Sbjct: 266 ALVREATDFLSGRSRLVKQELAGEMEKASAELEFETAALYRDRLAALSAIQSQQGINPRT 325 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 ++ DV + + G CV V F R G+ G+R+YFP+ + EV+ F+ QFY Sbjct: 326 VEEADVFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKTFTVEEVLAAFLAQFY---- 381 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 + P +ILL + + LLA++L +G K+ + T RG++ + A TNA AL Sbjct: 382 DDKAPPKQILLSHRIEECELLAEALCIKSGHKVEILTPQRGEKKELVGHALTNAREALGR 441 Query: 369 KLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 KL+ +T + L L + LKLP KR+E +D SH G V + +V +G ++ +YR+ Sbjct: 442 KLADTATQTRLLQGLVTTLKLPHTPKRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRK 501 Query: 428 YNI--TGITPGDDYAAMNQVLRRRY------------GKAIDDSKI---PDVILIDGGKG 470 +NI GITPGDDY M +VL RR+ GK D ++ PD+++IDGG+G Sbjct: 502 FNIRSEGITPGDDYGMMREVLERRFKRLLAPPPEAEAGKPKPDDEVPQWPDLVIIDGGRG 561 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 QL + +F L +S L+ VAKG DR AG ETLF P+ L P P L+ I Sbjct: 562 QLNAVQEIFQALGLSTVT----LMAVAKGPDRDAGRETLFM-PDRLPIKLEPRDPVLYFI 616 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 Q +RDE+H IG HRK R K + L+ I G+GP R++ LL + G L+ + AS+ ++ Sbjct: 617 QRLRDEAHRFVIGSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGDL 676 Query: 591 AKVPGISQGLAEKIF 605 KVPGIS A++IF Sbjct: 677 GKVPGISAESAKRIF 691 >UniRef50_Q3IYX6 UvrABC system protein C n=23 Tax=Alphaproteobacteria RepID=UVRC_RHOS4 Length = 623 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 241/608 (39%), Positives = 355/608 (58%), Gaps = 21/608 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 + +LKT+ PGVYRM DA V+YVGKA++L+ R+S+Y R + S + ++ + + Sbjct: 19 QGYLKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMM 78 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKG 126 T TETEALLLE N IK +PRYNVLLRDDKS+P I ++ D P L HRG K KG Sbjct: 79 FLTTRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKG 138 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGPF + AV TL LQ++F +R C ++ + +R+RPCL +QI RC PCV G V E Sbjct: 139 SYFGPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCV-GRVPAE 197 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +YA+ + FL G+ +V L +M+ AS+ +EFE AA +RD+I+A+ +V Q ++ Sbjct: 198 DYAELIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGIN 257 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 G + DVI V + G ACV V FIR + G+R +FP+ G E E++E F+ QFY Sbjct: 258 PRGVAEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFY- 316 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + P ILL + + L+ LSE AGRK+ + RG++A ++ A NA + Sbjct: 317 ---DDKEPPRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARES 373 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 L ++++ +T ++ L LA +L KR+E +D SH G V +V G L+++ Sbjct: 374 LARRMAESATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQ 433 Query: 425 YRRYNITGI--TPGDDYAAMNQVLRRRYGKAIDD------SKIPDVILIDGGKGQLAQAK 476 YR++NI G GDD+ M +VL RR+ + + + PD++LIDGG GQ++ + Sbjct: 434 YRKFNIRGAAGAQGDDFGMMKEVLTRRFERLLKEDPERKTDAWPDLLLIDGGAGQVSAVQ 493 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 + EL V + +GVAKG DR AG E F P F+L + P L+ +Q +RDE Sbjct: 494 EILQELGV----DDVPFIGVAKGIDRDAGKEE-FHRPGEPPFALRMNDPVLYFVQRLRDE 548 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H AIG HR KRAK + + L+ I GVG R++ LL + G + + A V ++ V GI Sbjct: 549 AHRWAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGI 608 Query: 597 SQGLAEKI 604 S+ +A+ I Sbjct: 609 SETMAQSI 616 >UniRef50_Q2G9G8 UvrABC system protein C n=2 Tax=Sphingomonadales RepID=UVRC_NOVAD Length = 658 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/604 (38%), Positives = 357/604 (59%), Gaps = 18/604 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 ++T+ +PGVYRM DA G V+YVGKA+ LK R+++Y + + +V+Q + + + Sbjct: 57 VQTLKPKPGVYRMLDARGDVLYVGKARALKNRVANYTQVERLPNRLRRMVSQTRSMTIVT 116 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKGEYF 129 T++E EALLLE IK ++P YNVLLRDDKS+PFI L GD PR++ HRGA+ AKG Y+ Sbjct: 117 TNSEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLRGDHAFPRISKHRGARKAKGNYY 176 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + +V T+ LQK+F +R C + R RPCL YQI RC PCV G +SE +Y Sbjct: 177 GPFASAGSVNTTINALQKLFLLRSCNDGFMARRDRPCLLYQIRRCSAPCV-GRISEADYG 235 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + V + FL GK V ++ ++M A+++L+FE AA +RD+++A + Q ++ G Sbjct: 236 ELVRQAKDFLGGKSGAVQREIEAQMHKAAEDLDFERAAMLRDRLRAATFIQGSQAINAEG 295 Query: 250 -DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 + DV +A G V FIR G+ G R++FP G EV+ +F+ QFY + Sbjct: 296 VGNADVFAMATKGGQVAVQAFFIRGGQNWGHRAFFPSHTEGLSEEEVMTSFLAQFYEEVP 355 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 R IL+D L + LLA++L E AG K+ + RGDR R ++ A+ NA AL Sbjct: 356 PARL----ILVDRALPEADLLAEALCEAAGGKVEISVPQRGDRRRLMEQAQRNAVEALDR 411 Query: 369 KLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 ++++ T + + LA L+LPEV +R+E +D SH G + + VV G ++ +YR+ Sbjct: 412 RMAESGTKAKVMRELAEFLELPEVPQRIEIYDNSHIQGTNALGAMVVAGPEGFVKGQYRK 471 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDD------SKIPDVILIDGGKGQLAQAKNVFAE 481 +NI DD+A M +V+ RR+G+A ++ PD++LIDGGKGQ++ K E Sbjct: 472 WNIKLAQTNDDFAMMREVMTRRFGRAQEEDPDRESGNWPDLVLIDGGKGQMSAVKEALGE 531 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L + ++ P L+ +AKG +F P+G LP +SP L +Q +RDE H A Sbjct: 532 LGI---EDVP-LVAIAKGPHHGREGREVFHFPDGREKMLPVNSPVLFQLQVMRDEVHRFA 587 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 IG HR KR++ S L+ I G+GP R++ LL + G +R AS+E++ + PG+S +A Sbjct: 588 IGAHRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAASLEDLQRAPGVSAAVA 647 Query: 602 EKIF 605 + I+ Sbjct: 648 QTIY 651 >UniRef50_Q0BPX7 UvrABC system protein C n=43 Tax=Alphaproteobacteria RepID=UVRC_GRABC Length = 644 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 238/612 (38%), Positives = 369/612 (60%), Gaps = 25/612 (4%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 +A LK + +PGVYRM D G +YVGKA+ LKKR++SY + + + +V++ ++ Sbjct: 34 EAMLKLLPDRPGVYRMLDGQGEALYVGKARSLKKRVASYTQIHRLPERLRRMVSETVSME 93 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK- 125 + THTE EALLLE N IK +PR+N++LRDDKSYP++ L+ D P++ HRGA+ K Sbjct: 94 IVTTHTEAEALLLEANLIKRLKPRFNIVLRDDKSYPWLMLTEDHAFPQIMKHRGAQTRKA 153 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 Y+GPF + +AV +T+ +Q+IF +R C +SV+ NRSRPCL +QI RC PCV+ +S+ Sbjct: 154 ASYWGPFASAWAVNQTVTAMQRIFLLRSCSDSVFANRSRPCLLFQIRRCSAPCVD-RISQ 212 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+YA+ V+ R FLSG+ ++ L +ME A++ LEFE AA IRD+I+ + V V Sbjct: 213 EDYAELVDQARAFLSGRGTEIQRDLARQMEQAAEALEFERAAAIRDRIRGLTHVQGTAVV 272 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + + DVI V DAG +CV V FIR G G+R+++P +V+ F+ QFY Sbjct: 273 NPASIGNADVIAVWQDAGQSCVQVFFIRGGHNNGNRAFYPAHTSAETAQDVLGAFIAQFY 332 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + P +LL+ ++++ L++++LS AGR++ + RG++ + A TNA Sbjct: 333 ----DDKPPPPLLLLNHTIAEQELVSEALSLKAGRRVELHVPVRGEKRAVVAHAETNARE 388 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL KL++ + ++ L +A + LP R+E +D SH MG VV G ++ Sbjct: 389 ALERKLAESAGQNRLLDGVAELFDLPTRPNRIEIYDNSHIMGTNPYGVMVVAGPEGWNKS 448 Query: 424 EYRRYNITG-ITPGDDYAAMNQVLRRRYGKAID--------DSKIPDVILIDGGKGQLAQ 474 YR+++I G ITPGDD+A M ++L RR+ + + ++ PD++LIDGG GQL+ Sbjct: 449 AYRKFSIRGPITPGDDFAMMREMLERRFSRGLKERAEGPEGEANWPDLVLIDGGAGQLSA 508 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEG-FSLPPDSPALHVIQHI 533 + + E+ V+ K L+ +AKG DR AG E +F EG+ F LPP P L+ +Q + Sbjct: 509 VRGILDEIGVTDVK----LVAIAKGPDRDAGRE--WFHTEGQAPFQLPPRDPVLYYLQRL 562 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H AI HR R+K S L+ I+G+G R++ LL + G +G++ A + + Sbjct: 563 RDEAHRFAITTHRAGRSKTLVRSELDDIDGIGAARKRALLNHFGSARGVKQAGLAALEAT 622 Query: 594 PGISQGLAEKIF 605 PGIS+ A +I+ Sbjct: 623 PGISKETARRIY 634 >UniRef50_Q2RS75 UvrABC system protein C n=13 Tax=Alphaproteobacteria RepID=UVRC_RHORT Length = 639 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 252/610 (41%), Positives = 357/610 (58%), Gaps = 23/610 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 +A L+T+ S PGVYRM D G V+YVGKA++LK+R+ +Y + + + + ++A ++ Sbjct: 34 RAALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTME 93 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKG 126 V THTE EALLLE N IK +PRYN+LLRDDKS+P+I ++ D PR+ RG G Sbjct: 94 VLTTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGG 153 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 EYFGPF + AV TL LQK F +R C ++V+ +RSRPCL +QI RC PCV+ V+E Sbjct: 154 EYFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVD-RVAEA 212 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +Y VE R FLSG + L RM+ A+Q L++E+AA RD+I+A+ V Q ++ Sbjct: 213 DYKALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDIN 272 Query: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 T + DVI G CV V F R G+ G+RS+FP G L EV+E F+GQFY Sbjct: 273 LPTLGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYA 332 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 P EILL ++ L+ +L AG ++ + RG R + + A NA A Sbjct: 333 GFPP----PREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREA 388 Query: 366 LTSKLSQQSTVHQRL--TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 L +L++ S L TA+A L P ++R+E +D SH G V VV G ++A Sbjct: 389 LGRRLAESSAQRTLLEGTAVAFGLDGP-LQRVEIYDNSHISGTHAVGGMVVAGPEGFMKA 447 Query: 424 EYRRYNITG--ITPGDDYAAMNQVLRRRYGKA------IDDSKIPDVILIDGGKGQLAQA 475 YR++NI ITPGDDYA M +V+ RR+ +A D + PD++LIDGG GQL Sbjct: 448 AYRKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAV 507 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + AE+ V ++ P L+GVAKG DR AG E FF P F L + P L+ IQ +RD Sbjct: 508 REALAEIGV---EDVP-LVGVAKGPDRDAGRER-FFVPGRPPFMLRHNDPVLYFIQRLRD 562 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR +R+K S L+++ G+G R++ LL + G + + A + ++ V G Sbjct: 563 EAHRFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEG 622 Query: 596 ISQGLAEKIF 605 IS LA+K++ Sbjct: 623 ISAALAKKLY 632 >UniRef50_D2RIL8 Excinuclease ABC, C subunit n=3 Tax=Veillonellaceae RepID=D2RIL8_ACIFE Length = 618 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/615 (40%), Positives = 357/615 (58%), Gaps = 34/615 (5%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQI 66 K L + + PGVY M+DA G VIYVGKA LK R+ SYFR ++ S K A+ A + I Sbjct: 6 KETLAVLPNAPGVYIMHDASGKVIYVGKAVILKNRVRSYFRPASQVSPKVRAINAHVASI 65 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 + VT +E EAL+LE N IK Y+PRYN+ L+DDK+YP++ ++ G+ +PR+ + R Sbjct: 66 ETIVTASEMEALILECNLIKKYRPRYNIDLKDDKTYPYLKITVGEAYPRMVLTRRVLKDG 125 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 Y+GPF + A+R+T+ L++ +FP+R C N N RPCLQY + RCL PC G V Sbjct: 126 ARYYGPFADAGALRDTMKLIRTMFPLRHCRNL---NAKRPCLQYHLHRCLAPCT-GKVPV 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EY Q V+ V L L GK Q+ L ++M+ AS NLEFE AAR RD + ++R++ EKQ Sbjct: 182 SEYRQMVDAVLLLLDGKVTQLEKDLTAKMQQASDNLEFEAAARYRDSLLSLRKLAEKQKA 241 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + D DV+G+A D CV V FIR GK+LG S+F G EV+ F+ Q+Y Sbjct: 242 TTESGDRDVVGLAMDDSGVCVQVFFIRSGKILGRDSFFLDQEIGEPDGEVLGDFLKQYYH 301 Query: 306 QGSQMRTLPGEILLDFNL--SDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 + + P EIL+ L SD+TLL LS L + +N+ RG + + +A NA Sbjct: 302 ENHRP---PREILVSAELADSDRTLLGQWLSSLCEKPVNLLVPQRGLKHDLVLMAVNNAK 358 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPE-------VKRMECFDISHTMGEQTVASCVVFD 416 L +L + Q T L + +L + ++RM+CFDISH G +TVAS VVF Sbjct: 359 KNLEERLRRGHASGQ--TGLDAAEQLQKALGLAKPLERMDCFDISHNQGRETVASMVVFR 416 Query: 417 ANGPLRAEYRRYNITGITPG--DDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQ 474 P + +YRRY + T G DD+ +M +V+ RRY D +P +I+IDGGKGQL+ Sbjct: 417 DGVPSKKDYRRYKLRS-TEGKPDDFKSMQEVVYRRYR---DLEDLPSLIIIDGGKGQLSS 472 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 A V L ++ ++ ++G+AK E +F E L SPALH+IQHIR Sbjct: 473 ACEVIRGLGITPEEVP--VIGLAKRE------EEIFKEGAHTSILLDKMSPALHLIQHIR 524 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE+H AI HRK+ K S L+ +EG+GPKRR L K G L +R ASVE++A V Sbjct: 525 DEAHRFAITYHRKRLGKRNLVSVLDHLEGLGPKRRAALWKRFGSLDAMRQASVEDLAAVD 584 Query: 595 GISQGLAEKIFWSLK 609 +++ +AE++ L+ Sbjct: 585 TMNRTVAERVHTFLQ 599 >UniRef50_Q4FPI1 UvrABC system protein C n=3 Tax=Candidatus Pelagibacter RepID=UVRC_PELUB Length = 611 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/604 (36%), Positives = 352/604 (58%), Gaps = 21/604 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + PGVYRM D ++YVGKAK+L RL SY +T +++Q ++++T Sbjct: 15 LPLIPKSPGVYRMLDHKDVILYVGKAKNLPNRLKSYVAEKNHIIRTARMLSQTFKLEITT 74 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYF 129 T E+EALLLE N IK ++P++N+LL+DDKS+PF+F+S D ++ HRG K +G YF Sbjct: 75 TANESEALLLEANLIKKHKPKFNILLKDDKSFPFVFISNKDQWAQVTKHRGKKDKEGFYF 134 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + T+ +LQKIF IR C++S ++NR RPC+ YQI RC GPCV+ + +E+Y Sbjct: 135 GPFASAGTANWTIKMLQKIFQIRVCDDSTFKNRKRPCILYQIKRCSGPCVD-YIDKEDYK 193 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + V+ F+SGK + L +ME AS+ L+FE A+ RD+I+++ + Q ++ Sbjct: 194 KSVDQAIQFVSGKSRDIQKNLSKQMEEASEKLDFERASIFRDRIKSLNIIQSSQRINEAN 253 Query: 250 -DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D DVI ++G C+ V F R + G+++YFPK LSE++ +F+ QFY Sbjct: 254 LIDADVIAAYKESGKTCIQVFFYRSKQNWGNQAYFPKHDPDQSLSEIMSSFLMQFY---- 309 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 + + +P I+++ + DK L+ ++LS+ I++ +G +A+ + +A NA +L Sbjct: 310 ENKNVPKLIIINTEIEDKKLIEETLSKKENSAISINVAKKGTKAKVIAMAEKNAKESLNR 369 Query: 369 KLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 K+ + + +A L + +E +D SH G +V + + F G ++ YR+ Sbjct: 370 KIYETNNNKNLFEGVAKKFDLKNGLNLVEVYDNSHISGTNSVGAMITFGNEGFVKKRYRK 429 Query: 428 YNI-TGITPGDDYAAMNQVLRRRYGKAIDDS----KIPDVILIDGGKGQLAQAKNVFAEL 482 ++I T DD+A + +VL RR+ +A+ + +PD+ILIDGGKGQ + AK V E Sbjct: 430 FDIKTKGNEQDDFAMLKEVLTRRFKRAMLEKGNYLTLPDLILIDGGKGQYSSAKEVLDEF 489 Query: 483 DVSWDKNHPL-LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 + H L ++ +AKG R +G ET F+ +G+ F + P L +Q +RDE+H A Sbjct: 490 GL-----HDLPMIAIAKGKLRNSGDETFFY--KGKSFKFDKNDPTLFFMQRLRDEAHRFA 542 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I HR KRAK S L+ I+G+G R++ LL + G + + +AS +EI V G+ + +A Sbjct: 543 ITSHRAKRAKGITKSLLDQIDGIGSIRKRALLNHFGSARAVESASFDEIKSVEGVEEKVA 602 Query: 602 EKIF 605 +KI+ Sbjct: 603 KKIY 606 >UniRef50_B9KY82 Excinuclease ABC, C subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY82_THERP Length = 625 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/616 (40%), Positives = 357/616 (57%), Gaps = 44/616 (7%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 L + PGVY M DA G VIYVGKA L++RL SYF S+ + KT LV+QI +V Sbjct: 21 LAALEPAPGVYLMKDAQGRVIYVGKASSLRQRLRSYFSSHSSMDAKTRELVSQIADFEVI 80 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 T T TEAL+LE+ IK Y+PR+N++LRDDK+YPFI ++ + PR+ R YF Sbjct: 81 RTDTPTEALILENELIKRYRPRFNIMLRDDKTYPFIRITNEPFPRVIATRRIVRDGSRYF 140 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+P+ AV TL LL+++FP R C+ + SR CL Y IGRC GPC+ G VS+EEY Sbjct: 141 GPYPSAGAVHRTLDLLKRLFPYRACDIEITGTASRACLYYHIGRCAGPCI-GAVSQEEYR 199 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNT 248 ++ V LFL G+ + V+ +L + ME A++ LEFE AARIRD+++A++ V ++Q V+ T Sbjct: 200 GIIDNVVLFLEGRAEAVVARLQAAMEEAAERLEFERAARIRDELRAIQHVLQQQKIVTGT 259 Query: 249 GDDLDVIGVAFDAGM-ACVHVLFIRQGKVLGSRSYF------PKVPGGTELSEVVETFVG 301 + DV+ VA AG ACV + F+R GK+LGS Y PG ++ +FV Sbjct: 260 DESFDVLAVAQSAGGDACVQIGFVRNGKLLGSEHYLMVGARIDDPPGA-----ILTSFVQ 314 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y Q S T+P E++L L D +A L+ + + G R +++ + Sbjct: 315 QYYAQAS---TVPPELVLQHPLDDGETIAAWLAARRDGPVRLTVPDDGFRRELVEMIAKS 371 Query: 362 AATALTSKLSQQSTVHQRLT----ALASVL---KLPEVKRMECFDISHTMGEQTVASCVV 414 A L + QR T LA L +LP +R+ECFD+S G VAS VV Sbjct: 372 AVQNLEQHRVRWLNDEQRTTLALEELADALGMDRLP--RRIECFDVSQLQGTNVVASMVV 429 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGG 468 F+ P +++YR++ I + DDYAA+ + + RRY +A+ + +PD++LIDGG Sbjct: 430 FEHGKPKKSDYRKFQIKTVEGQDDYAALREAVLRRYRRALSAEQTEAWQALPDLVLIDGG 489 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL+ A+ EL + L +A A E L+ + E LP DS AL Sbjct: 490 KGQLSAAREALVELGLD--------LPIAALAKEH---EELYIPDQSEPIVLPRDSQALF 538 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 ++Q +RDE+H A+ HR +R + S L+ I G+GP+RR+ LL+ G ++G+R AS+E Sbjct: 539 LVQRVRDEAHRFAVTFHRARRTRSTIRSLLDEIPGIGPRRRRELLRRFGSVEGIRQASIE 598 Query: 589 EIAKVPGISQGLAEKI 604 EIA VPGIS+ LAE+I Sbjct: 599 EIAAVPGISRALAERI 614 >UniRef50_Q1Q607 Similar to uvrABC system protein C (UvrC exinuclease) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q607_9BACT Length = 610 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/614 (38%), Positives = 355/614 (57%), Gaps = 38/614 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVT 69 LK V PGVY M DA VIYVGKAK+LK R+ SYF+ R TE L+ + ID Sbjct: 7 LKNVPVSPGVYLMKDAKHKVIYVGKAKNLKNRVRSYFQKGTGDRLYTEYLIKHVVDIDFV 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEY 128 +T TE EAL+LE+N+IK ++P++N+ LRDDK++ I L + P + R + Y Sbjct: 67 LTETEKEALILENNFIKQFKPKFNINLRDDKNFLCIKLETNKDFPYPKVVRQKEDDGAMY 126 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGP+ + AVRETL + P+R+C ++ +++R++PCL YQI +CLGPC GL+ Y Sbjct: 127 FGPYASARAVRETLRYINDTIPVRKCRDNAFKSRTKPCLYYQIHKCLGPCC-GLIDRAGY 185 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN- 247 ++ V L L GK + +++ L +M S+ L +E+AA++RDQIQ++ + EKQ +++ Sbjct: 186 KTLIDQVILLLKGKQEDLISILRKQMYEESKQLRYEKAAKLRDQIQSIEQTVEKQRINSL 245 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 T D DV G + V+FIR G + SY + T + EV +F+ QFY Sbjct: 246 TFIDRDVFGYYLTDNDVYIEVMFIRSGNMEDIASYRLSI-NHTTIEEVFRSFLNQFY--- 301 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 SQ R +P E+++ N D LL + L+E G+K++V RGD+ R +++A+ NA A Sbjct: 302 SQTRFIPSEVIIPVNSPDAVLLEEWLTERKGKKVSVFCPKRGDKLRLIEMAQKNAMNAYK 361 Query: 368 SKLSQQSTVHQRLTALASVL---KLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 +Q + L AL V+ LPE R+ECFDIS+ G+Q V S V F P +++ Sbjct: 362 VSQTQDDNYSRTLQALKDVIGLRNLPE--RIECFDISNIFGKQAVGSMVTFKCGMPDKSK 419 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 Y+R+ I + DDYA M++VL RRY +A+++ +PD++++DGGKGQL A VF EL + Sbjct: 420 YKRFRIKTVDQIDDYAMMHEVLLRRYKRAVEEGDLPDLVMVDGGKGQLGVALRVFEELAI 479 Query: 485 SWDKNHPLLLGVAKGADR-KAGLETLFFEPEGEG------------FSLPPDSPALHVIQ 531 N LL ++K DR K+G+ P+GE LP SP L + Sbjct: 480 ----NDTDLLALSK--DRGKSGI------PKGEQGEQVHAPHIPHPILLPSSSPVLLFLA 527 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H AI HRK R K S L+ I G+G R++ L+K G ++G+RNA++ ++ Sbjct: 528 KIRDEAHRFAIAYHRKLRDKEYYKSPLDEIPGIGIIRKKALIKRFGSIEGIRNATINQLT 587 Query: 592 KVPGISQGLAEKIF 605 ++ + LA +++ Sbjct: 588 EIGKLPAKLANEVY 601 >UniRef50_B8CYK1 Excinuclease ABC, C subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYK1_HALOH Length = 607 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 224/610 (36%), Positives = 361/610 (59%), Gaps = 24/610 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LK + +PGVY M D G VIYVGKAK L++R+ SYFR + KT+ +V I D V Sbjct: 8 LKRLPDRPGVYLMKDETGEVIYVGKAKSLRRRVRSYFRKGNHTFKTKIMVKHIADFDYIV 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T TE EA +LE N IK Y P++N+ L+DDK+YP+I ++ + PR+ R K+ YF Sbjct: 68 TDTEVEAFILEANLIKKYNPKFNIRLKDDKTYPYIKVTVQEDFPRIFKTRLVKNDGNRYF 127 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVY--RNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 GPF + A+ +T+ +L+ +F +R C+ ++ + RPCL Y IG+C+GPC+ G + Sbjct: 128 GPFTDVNAIYKTIDVLKDLFSLRTCKKNLEAGKPEKRPCLNYHIGKCVGPCI-GAIDRNS 186 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-S 246 Y + V+ V LFLSGK D+++ ++ M A++ FE+AAR RD ++A++ ++ +Q V S Sbjct: 187 YRELVDRVCLFLSGKQDELINEVEKEMYQAAEKKNFEKAARFRDAVRALKNISAQQKVMS 246 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 + + D+I + + G ACV VLFIR G+++G + + ++++ +F+ Q+Y Q Sbjct: 247 SKNINQDIIALVEEEGEACVQVLFIRNGRLIGQEYFLMEGVDEESNTDIMVSFLQQYYEQ 306 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + +P EI+++ ++S LL D L + G+K+ + +G++ R +++A NA+ L Sbjct: 307 APE---IPQEIVINTHVSQTELLEDWLQQKKGKKVKILIPLKGEKKRLVEMASKNASQNL 363 Query: 367 TSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPL 421 +L ++ QR L L L L +E FDIS+ G VAS VVF P Sbjct: 364 KKELIRRKYQKQRNEKALDQLVEYLVLSSKPVHIEGFDISNIQGSDPVASMVVFKDGVPS 423 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA 480 +A+YRR+ I ++ +D+A M +V++RRY + +++ +PD+ILIDGGKGQL A V Sbjct: 424 KADYRRFRIKTVSGPNDFAMMQEVVKRRYSRLLEEEGDLPDLILIDGGKGQLNAALEVLK 483 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 E+++ + L +A A R+ E +F + E +P SPALH++Q +RDE+H Sbjct: 484 EMNLDY-------LDIAGLAKRE---EEVFLPGQKEPVIIPRKSPALHLLQRVRDEAHRF 533 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A+ HRK R++ + L+ I GVGPKRR+ LL + G L +R A++ ++ +V GIS Sbjct: 534 AVSYHRKLRSRRLTHTMLDEIPGVGPKRRKALLSHFGSLGAIRKATIGQLKEVDGISNKT 593 Query: 601 AEKIFWSLKH 610 A I+ L+ Sbjct: 594 ARVIYDYLRE 603 >UniRef50_B8FHR2 UvrABC system protein C n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=UVRC_DESAA Length = 603 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/605 (39%), Positives = 359/605 (59%), Gaps = 18/605 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF--RSNLASRKTEALVAQIQQIDV 68 L T+++ PGVY M D G +IYVGKA+ LKKR+SSYF + N KT LV +I D Sbjct: 8 LATLSNGPGVYLMKDESGEIIYVGKARSLKKRVSSYFLEKPN-RDLKTGILVKKIASFDA 66 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHAKGE 127 + TE EAL+LE N I+ ++PRYN+LL+D K +P + + T +PRL + R K Sbjct: 67 ILVTTEKEALILEANLIRKHKPRYNILLKDGKRFPSLRIDVRTSYPRLEVVRKVKKDGAI 126 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGPF + +R TL ++ K F +R+C+ R+RPCL YQ+G+CLGPC V +E Sbjct: 127 YFGPFSSAGKLRSTLKIINKTFQLRKCKQKEPPKRNRPCLNYQMGQCLGPCCLP-VDRDE 185 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y V V LFL G+ + +L ++ +M AS+ E+E AAR+RD++ A++ EKQ Sbjct: 186 YLDMVNEVILFLKGRTNDLLQKIKEQMAAASERQEYELAARLRDRMFAIQATVEKQAAVT 245 Query: 248 TG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY-FPKVPGGTELSEVVETFVGQFYL 305 T D DVIG+ + + + VL+IR G +LGSR+Y F +V G SE ++ F+ Q+Y Sbjct: 246 TDFVDRDVIGIDREPEGSAISVLYIRGGFLLGSRNYNFDEVLGTD--SESIQAFLRQYY- 302 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + R +P E+ + L + L+ L+E A +++ + RG++ R +++A NA A Sbjct: 303 --DKDRFIPDEVFVPCQLENMELMEQWLTETAEKRVVLHWPQRGEKTRLIEMANENAHEA 360 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 L ++S ++ L L L++ +R+ECFDISHT G QTVAS +VF+ ++E Sbjct: 361 LKDRISSENVFKSLLERLQKRLRMDRPPRRIECFDISHTGGNQTVASMIVFEDGKEAKSE 420 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YR +NI + DDYAAM++V+ RR+ D PDV+LIDGGKGQL+ +V L V Sbjct: 421 YRTFNIDSLDHPDDYAAMHEVMARRFSPD-KDWPTPDVLLIDGGKGQLSITASVLDGLGV 479 Query: 485 SWDKNHPLLLGVAKGAD-RKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 ++ +AK + +K ++ ++ + D L +Q +RDE+H AI Sbjct: 480 MGAFE---VISIAKKDEAKKETMDKIYRPGQANPVVFGRDGDVLLFLQRVRDEAHRFAIT 536 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 HRKKRAK S+L+++ G+G KR++ LL++ G ++ L+ AS E+IA+VPGIS A++ Sbjct: 537 THRKKRAKTIRKSALDSVPGIGEKRKKALLRHFGSIKRLKEASPEDIAQVPGISVKRAQE 596 Query: 604 IFWSL 608 I +L Sbjct: 597 ILEAL 601 >UniRef50_A9B4F8 Excinuclease ABC, C subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4F8_HERA2 Length = 641 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/628 (38%), Positives = 348/628 (55%), Gaps = 43/628 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 L+ + PGVY D T+IYVGK+K L+ R+ SYF + + KT LV I + Sbjct: 19 LRNLPLSPGVYIYRDQANTIIYVGKSKSLRDRVRSYFGAPRGLTSKTRRLVQNIADFEFI 78 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 T TE EALLLE N IK ++PRYNVLL+DDKSYP+I ++ + PR+ R G YF Sbjct: 79 TTDTELEALLLEMNLIKKHRPRYNVLLKDDKSYPYIKITKEAWPRVLRVRKVIEDGGIYF 138 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRCLGPCVEGLVSEE 186 GPF +V T+ LL K+F R C + +++ R+R C+ Y I RCLGPC + E Sbjct: 139 GPFAKASSVYATIELLNKLFAFRLCNDDMFKKHERRNRACMYYDIKRCLGPCANNCTT-E 197 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 EY+ + VRLFL GK + +L L +M A+++L+FE AA +RDQI+AV RV E+Q V Sbjct: 198 EYSTAINQVRLFLGGKPEAILRDLKVKMNQAAEDLQFERAAYVRDQIKAVERVMERQKVL 257 Query: 247 NT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 NT D DVI A D G A V V +IR GK++GS + + ++ +F+ QFY Sbjct: 258 NTAASDQDVIAFARDEGKAVVQVFYIRGGKLIGSEPFTLQGTEEEHPEALMSSFLTQFYD 317 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P ILL + ++ L G K+++Q RGD+ + LA NA+ Sbjct: 318 AAAD---IPPNILLPDYPEETQIIEQWLESKGGHKVSLQVPRRGDKKDLVDLAARNASQT 374 Query: 366 LTSKLSQQSTVHQRLTA----LASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGP 420 L Q QR TA L +L L E+ +R+EC+DIS+T G +V S VVF+ P Sbjct: 375 LDQLRLQWLNAEQRATAGLSQLRELLNLAELPQRIECYDISNTQGTNSVGSMVVFEQGEP 434 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK---------------------- 458 + YRR+ I + +D A++++VL+RR+ +A D + Sbjct: 435 AKKHYRRFKIKTVEGANDVASLSEVLQRRFARADDTGQTDEPESTEQTSAEPTNNDETWA 494 Query: 459 -IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP-EGE 516 +PD+ILIDGG GQ+ N A+ + H ++G+ KG D K L +P + Sbjct: 495 VLPDLILIDGGIGQV----NAAAKTLAAAGFEHIPVVGLVKG-DTKGHLPYGLVKPGQRV 549 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 + + P LH++Q I +E+H AI HRK R K S++E I G+GPKR++ L+ Sbjct: 550 PIAFAQNDPGLHLVQRIDEEAHRFAISYHRKLRTKGMLRSTMEDIPGIGPKRKKALINAF 609 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKI 604 G L+G+RNAS+EE+A VPG+++ AE+I Sbjct: 610 GSLEGIRNASIEELAAVPGMTRKAAEEI 637 >UniRef50_C9KP10 Excinuclease ABC subunit C n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KP10_9FIRM Length = 623 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/608 (39%), Positives = 359/608 (59%), Gaps = 33/608 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 LK + PGVY M DA G +IYVGKA LK R+ YF+ N S K +A+V+ I ++ Sbjct: 9 LKLLPDSPGVYIMKDANGRIIYVGKAVVLKNRVRQYFQHNKNHSPKVKAMVSHIADFEII 68 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM-HRGAKHAKGE 127 +TH+E EAL+LE N IK ++P YN+ L+DDKSYP++ ++ + +PR+ + HR K Sbjct: 69 MTHSEVEALILECNLIKKHRPHYNISLKDDKSYPYVKVTVQEEYPRVFLTHRVTKDG-AR 127 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGP+ + AV ++L LL+K+FP+R C + + RPCL+Y I RCL PCV G V+EE+ Sbjct: 128 YFGPYTDVTAVHQSLKLLRKLFPLRTCRHL----QERPCLEYHIKRCLAPCV-GKVTEED 182 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 YA + V LFL G+ V +L RME A++ FE AAR+RDQ++AV+++ EKQ + Sbjct: 183 YAAMIRAVLLFLEGRTADVERELKVRMEQAAEAFHFETAARLRDQLRAVQKIAEKQNIVT 242 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D D IG+A CV V FIR GK++G + + ++++ F+ Q+Y + Sbjct: 243 GAGDQDAIGLARSEIGVCVQVFFIRAGKMIGREHFLLQGSEEESDADILAAFLSQYYHRA 302 Query: 308 SQMRTLPGEILLDFNL--SDKTLLADSLSELA-GRKINVQTKPRGDRARYLKLARTNAAT 364 + +P EILL + +++ LL L+E G K+ + RG + + +A +NAA Sbjct: 303 A---FVPREILLPMAIAEAEQALLESWLTEKKQGTKVQLLLPQRGTKRDIVAMAESNAAK 359 Query: 365 ALTSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 L + ++ ++ + L L L ++ RMECFDISH G +TVAS VVF+ Sbjct: 360 YLADEAARIKQADEKTMGAVRELGHYLGLKKMPYRMECFDISHIQGSETVASMVVFEGGL 419 Query: 420 PLRAEYRRYNITGITPG--DDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P +++YRR+ I T G DD+ +M +V RRY + + ++P++I+IDGGKGQL+ A Sbjct: 420 PKKSDYRRFKIQS-TEGKPDDFLSMREVTTRRY-VGLPEEELPNLIVIDGGKGQLSSALE 477 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 + K+ P ++G+AK E +F E E E LP S AL++I+ IRDE+ Sbjct: 478 IIR--GAGGHKDVP-VVGLAK------QFELVFKEGESEPVVLPRHSQALYLIERIRDEA 528 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRK R K S L+ I G+GPKRRQ L + G + +R ASVEE+ + PG++ Sbjct: 529 HRFAITYHRKLRGKRNLVSVLDHIVGIGPKRRQALRSHFGTIARIREASVEELQQAPGMN 588 Query: 598 QGLAEKIF 605 + AE ++ Sbjct: 589 RPAAEAVY 596 >UniRef50_A8ZVJ2 Excinuclease ABC, C subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVJ2_DESOH Length = 626 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/607 (38%), Positives = 354/607 (58%), Gaps = 19/607 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVT 69 L ++PGVY M D G +IYVGKA +LKKRL+SYF + KT L+ ++ D Sbjct: 22 LAGAPARPGVYLMKDGAGAIIYVGKAFNLKKRLASYFVKKERLDLKTGLLMERVVDFDTI 81 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEY 128 VT TE EAL+LE + I+ ++PRYNVLL+DDK YP + + +P L + R + Y Sbjct: 82 VTATENEALILEASLIRRHKPRYNVLLKDDKRYPSLRIDPRQPYPALEIVRKTRPDGAVY 141 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF + AVRETL ++ K F +R+C V++ RSRPC+ +Q+G CLGPC V E +Y Sbjct: 142 FGPFSSARAVRETLKVVDKTFRLRKCRGKVFKKRSRPCINFQMGLCLGPCFYD-VPENDY 200 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 A+ V V LFL G+ ++++ L RM+ A++N EFE+AA +RD++ A+ +V EKQ V Sbjct: 201 AEAVREVSLFLKGRATELVSDLRVRMKGAAENQEFEKAALLRDRLFAIEKVIEKQVVVTP 260 Query: 249 G-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D DVI VA + + V +L +R+G + G+R +F + +++ + TF+ Q+Y + Sbjct: 261 DFADRDVIAVAEEGRRSVVALLQVRKGVLSGTR-FFHFEELLSSVADSLATFMVQYYTEP 319 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P EIL D +AD L +LA +++N+ RG++ +K+AR NA L Sbjct: 320 GR---VPDEILTDGTPFGGPWIADHLRDLAEKRVNMAVPRRGEKFLLIKMARENAQNELA 376 Query: 368 SKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 + + L LA L L +V R+ C D SH G TVA+ VVF P + YR Sbjct: 377 AAALGARKHQKTLERLARKLGLSDVPARIACVDNSHLAGTGTVAAVVVFADGVPDPSAYR 436 Query: 427 RYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 RY + G+ DDYAAM QVL RR+ DD+ D++L+DGG+GQL A V E ++ Sbjct: 437 RYRLAGVPAADDYAAMKQVLVRRFAAGADDAGPVDLLLVDGGRGQLNIAAAVLQEAGLAG 496 Query: 487 DKNHPLLLGVA----KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 +GVA K ++ + ++ +L P PAL +++ IRDE+H AI Sbjct: 497 K------MGVAAISKKDEAKEETADKVYVPGRRNPVNLGPADPALFLLEEIRDEAHRFAI 550 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 RK+R ++ S+L+ I G+GP+R++MLL G ++G+R ASVE++A +PGI+ +A Sbjct: 551 DYQRKERKRISLRSALDDIPGIGPQRKRMLLDRFGTVEGVRAASVEDLAALPGITGSMAG 610 Query: 603 KIFWSLK 609 +I L+ Sbjct: 611 QIREHLR 617 >UniRef50_D1BLY6 Excinuclease ABC, C subunit n=5 Tax=Veillonellaceae RepID=D1BLY6_VEIPT Length = 608 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 228/602 (37%), Positives = 354/602 (58%), Gaps = 35/602 (5%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR--KTEALVAQIQQIDVTVTHT 73 + PGVY D +IYVGKA +L+ R+ SY R N A+R K A++ + ++V T T Sbjct: 15 TTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVR-NDANRAPKVTAMMKRAVDVEVIQTKT 73 Query: 74 ETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPF 132 E EAL+LE+ IK ++P+YN+ LRDDK+YP++ +S + +PR+ M R + +YFGPF Sbjct: 74 EMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAKYFGPF 133 Query: 133 PNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQV 192 + +V L L+++ +P+R C++ RPCLQY + C PC +S +Y + + Sbjct: 134 TDVTSVHVVLKLIRQYYPLRTCKSM---KVERPCLQYHMHYCEAPCFNK-ISVPDYRKYI 189 Query: 193 EYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDL 252 + + GK +L ++ S+ME A+++L FE+AAR RDQ+ ++ ++ EKQ + DL Sbjct: 190 DEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMVTQRGDL 249 Query: 253 DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET-FVGQFYLQGSQMR 311 DV+G+A D MACV +LFIR G++LG +YF + G + SE + T F+ Q+Y Sbjct: 250 DVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDS--SETIMTDFIKQYY---GDTN 304 Query: 312 TLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLS 371 +P E+LL +D+ LL + ++L G+ ++V RG + +K+A NA T L + Sbjct: 305 FIPKELLLPMESTDRDLLTEWFTQLKGQHVDVSVPQRGYKMDMIKMAHENAETFLEERRR 364 Query: 372 QQSTVHQ------RLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 Q HQ + LA +L LP + +RMECFDISHT G +TVAS VVF+ P + E Sbjct: 365 QWQ--HQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGAETVASMVVFEGGKPAKKE 422 Query: 425 YRRYNI-TGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 YRR+ + T DD+ +M +++ RRYG D +PD+I+IDGGKGQL A + + Sbjct: 423 YRRFKLKTTQGKPDDFKSMAEIMERRYGNET-DWPMPDLIIIDGGKGQLNAALPLIRAVG 481 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 V+ + P ++ +AK +E +F E + E L +P L ++Q IRDE+H AI Sbjct: 482 VT---DVP-VISLAK------RIEEVFVEGQSESIILSHHTPELQLLQQIRDEAHRFAIT 531 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 HRK R K S L+ IEG+GPKRR+ L + L+ ++ AS++E+A V ++ AE Sbjct: 532 YHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELANVESMNYKTAET 591 Query: 604 IF 605 ++ Sbjct: 592 LY 593 >UniRef50_A3DJ07 UvrABC system protein C n=15 Tax=Bacteria RepID=UVRC_CLOTH Length = 625 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/633 (36%), Positives = 366/633 (57%), Gaps = 48/633 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQI 63 FD + LK + +PGVY M D G +IYVGKA LK R+ YF+S + + K A+VA I Sbjct: 2 FDIQEELKKLPDKPGVYIMKDENGEIIYVGKAVVLKNRVRQYFQSLSNQTPKVRAMVAHI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ++ + VT TE EAL+LE N IK ++P++N+LL+DDK+YP+I ++ + PR+ M R + Sbjct: 62 KEFEYIVTDTELEALILECNLIKKHRPKFNILLKDDKNYPYIKVTMNEDFPRILMTRRVE 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVE 180 +YFGP+ + YAVRET+ L++K+FP++ C + R+ + RPCL Y I +CLGPC + Sbjct: 122 KDGAKYFGPYTSAYAVRETIDLVKKLFPVKTCSKVLPRDIGKGRPCLNYHIYQCLGPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G VS+EEY ++ V FL G+ + ++ +L M+ A+ NLEFE AARIRD+I +++ + Sbjct: 181 GNVSKEEYRFMMQDVCNFLGGRQEDIIKKLEKDMKEAADNLEFERAARIRDKINSLKHIA 240 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ +S +D DVI A +C+ V FIR GK++G + + SE++ F Sbjct: 241 EKQKIISTAMEDQDVIAFAKSETDSCIQVFFIRGGKLIGREHFILEGTSDVSDSELMTAF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 V QFY S +PG+I+L ++ + ++ LS G K ++ RG++ + +++ Sbjct: 301 VKQFY---SSAAYVPGQIILQEDIDEMEIIEKWLSGKRGTKTYIKVPRRGEKLKLVEMVS 357 Query: 360 TNAATALT---SKLSQQSTV----HQRLTALASVLKLPEVKRMECFDISHTMGEQTVASC 412 NA L ++ +++ + ++L L ++ +LP +R+E +DIS+T + V S Sbjct: 358 KNALIELNQFKERIKKEAALAKEGMEKLKELLNLDRLP--RRIEAYDISNTGSTEIVGSM 415 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD---------------- 456 VVF+ P +++YRR+ I I +DY +M +V+ RR +A + Sbjct: 416 VVFENGSPKKSDYRRFKIKSINVQNDYQSMQEVIFRRLKRAQKEMTEKDEGGGKDVGEKG 475 Query: 457 ---SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP 513 +PDV+L+DGG G + ++V ELD N P+ V R GL T Sbjct: 476 AGFGTLPDVLLVDGGTGHVNAVRSVLEELDF----NIPVYGMVKDDNHRTRGLVT----- 526 Query: 514 EGE-GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQML 572 GE F L D L + I+DE+H A+ +RK RAK + S L+ IEGVGPKR++ L Sbjct: 527 -GEREFDLSKDIVLLRFVTAIQDEAHRFALEYNRKLRAKRYSGSVLDNIEGVGPKRKKEL 585 Query: 573 LKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 +++ G ++ ++ A EIAKV GIS+ LA+KI+ Sbjct: 586 IRHFGSVKAIKEAEPGEIAKVKGISRDLAQKIY 618 >UniRef50_B0S0L4 UvrABC system protein C n=2 Tax=Finegoldia magna RepID=UVRC_FINM2 Length = 608 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 216/620 (34%), Positives = 343/620 (55%), Gaps = 27/620 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD K L+ V +PGVY M+D +IYVGKA DL++R+ YF S+ K A+V+ ++ Sbjct: 2 FDIKKELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVE 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 + + + E EAL+LE N IK P+YN++LRDDK YP+I ++ + PR+ R Sbjct: 62 YFEYIIVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITNEKFPRVLKTRRVLKD 121 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGL 182 K +YFGPFPN YAV + + L+ + + IR C + + + RPCL Y I RC G CV Sbjct: 122 KAKYFGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYD- 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+EE+Y +++ V FL+G++D++ +L +M AS+NL FE AA++RD I ++ + EK Sbjct: 181 VNEEDYNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSITNIQVILEK 240 Query: 243 QFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q ++NT G DLD+I +A +A CV V F+R GK++ + + +V F Sbjct: 241 QNITNTKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFK 300 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 QFY+ + +P +IL D + D+ L+ + L+E G K+ ++ RG++ L++ R N Sbjct: 301 QFYI---DLTYVPKQILTDIEIEDRDLIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVN 357 Query: 362 AATAL----TSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 A L + L ++ + L + + + R+EC+DIS+T G +V S +VF Sbjct: 358 AKEGLDKYISRHLKRERNRENAILDLQDITGVKPIDRIECYDISNTSGVDSVGSMIVFKN 417 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-------IPDVILIDGGKG 470 +YR++ I + DDYA+ +VL RR+ + +D K +P +IL+DGGKG Sbjct: 418 GAKSSKDYRKFKIKTVEGADDYASHREVLTRRFRRLLDSDKKDNSFDEMPSIILMDGGKG 477 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 Q+ AK V E ++ P+L V R G+ E E L ++P ++ Sbjct: 478 QVNIAKEVLNEFNLDI----PILGLVKDDKHRTRGIIY-----ENEEIRLKVNTPLYRLL 528 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 I++E+H AI HRK K S L+ I +G KR++ L+K+ L ++ ASVEE+ Sbjct: 529 FAIQEETHRFAINYHRKLHEKNFKKSELDNIALIGEKRKKALMKHFKTLDRIKKASVEEL 588 Query: 591 AKVPGISQGLAEKIFWSLKH 610 +V G+++ AE I K Sbjct: 589 CEVDGMNEKAAENIVNYFKQ 608 >UniRef50_B0K791 UvrABC system protein C n=11 Tax=Thermoanaerobacterales RepID=UVRC_THEP3 Length = 615 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 221/618 (35%), Positives = 360/618 (58%), Gaps = 37/618 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVT 69 LK + +PGVY M D G +IYVGKA LK R+ YF++ K + +++ ++ + Sbjct: 7 LKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHVEDFEYI 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 VT TE EAL+LE N IK Y+P+YNVLL+DDK+YP+I ++ + +PR+ R + +Y Sbjct: 67 VTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAKY 126 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVEGLVSEE 186 FGP+ + +AVRET+ L++K+FPIR C ++ ++ + R CL Y IG C PC +++E Sbjct: 127 FGPYSSAFAVRETIKLVRKMFPIRTCNKNIEKDMGKVRECLYYHIGLCSAPCTNK-INKE 185 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +Y + V+ LFL GK D ++ +L M+ A++ L FEEAARIRDQI A+ R +EKQ V Sbjct: 186 DYIKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245 Query: 247 NTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + G+D D+I +A A ++C+ V F+R GK+ G Y+ K G E E++ +F+ QFY Sbjct: 246 SVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFY- 304 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 +G+ +P EI+ D L + LL++ LS+ G K+ + RG + + + NA A Sbjct: 305 EGAPY--IPKEIITDVELDESELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEA 362 Query: 366 LTSKLSQQSTVH--QRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 L + +S + + Q + L++++ L KR+E +DIS+T G+ V S VVF P ++ Sbjct: 363 LKNDISIREEISKAQVVLELSNLVGLDYAKRIEAYDISNTRGQDNVGSMVVFVDGKPKKS 422 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------------SKIPDVILIDG 467 +YR++NI + DDY +M +V+ RR+ AI++ +++PD+I +DG Sbjct: 423 QYRKFNIKYVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPDLIFVDG 482 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G G + V + L +S P+ V R GL + P+GE +P S A Sbjct: 483 GIGHVNAVLQVLSGLGISI----PVYGMVKDSKHRTRGLVS----PQGE-IDIPMTSKAF 533 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +I I++E+H AI H++K++K + S L I G+G KR + L ++ ++ ASV Sbjct: 534 RLIAQIQEEAHRFAITFHKEKQSK-RFKSELLNIPGIGEKRAKALYDAFKSIEEIKRASV 592 Query: 588 EEIAKVPGISQGLAEKIF 605 E++ KV G+++ A+ ++ Sbjct: 593 EDLKKVEGMNEKAAQAVY 610 >UniRef50_C9R9D0 Excinuclease ABC, C subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9R9D0_AMMDK Length = 622 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/626 (38%), Positives = 350/626 (55%), Gaps = 41/626 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M ++ KA +++ ++PGVY D G VIYVGKA L++R+ SYF+ N S K EA++ Sbjct: 1 MREELLLKA--QSLPAEPGVYLFKDERGEVIYVGKAASLRQRVKSYFQGN-PSPKVEAIL 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 ++ ++ VT E EAL+LE N IKL++PRYNV+L+DDKSYP+I ++ + +PR+ R Sbjct: 58 RRVANLEFMVTDNEVEALILEANLIKLHRPRYNVVLKDDKSYPYIKVTVEEEYPRVLFAR 117 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + YFGP+ AV ETL L+ +FP R C V R SRPCL Y I RC GPC Sbjct: 118 RRDDKRARYFGPYTKAGAVYETLRFLRTLFPYRSCSGPVPRPNSRPCLNYHIKRCPGPCT 177 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G V E Y + ++ + LFL G+ QVL QL M+ A++ L FE AA RD++QA++ + Sbjct: 178 -GQVDPEVYRRNIDSLCLFLEGRYRQVLRQLEREMKQAAEELAFERAAVYRDRLQALKLI 236 Query: 240 TEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 E+Q VS+ +DLDV+G+A A VL +R+G+++G S FP E ++ Sbjct: 237 LERQRVVSSRPEDLDVVGLARQEDRAQAVVLLVREGRLIGQES-FPLTIAPEEEQGLLTE 295 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ Q+Y G + P E++L ++ L+ D L AG ++ + RG + L+LA Sbjct: 296 FLKQYY--GVIASSFPSELVLPSPPLEEALV-DLLRSRAGFEVKIVVPRRGHKKELLELA 352 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 NA AL L + + L++LA L LP V R+E +D SH G VA VVF Sbjct: 353 EKNAWAALNEGLREAEAQARSLSSLAEALGLPRVPHRIEGYDASHLQGVAPVAVMVVFVG 412 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------------IPD 461 P ++ YRR+ +T +DY A+ + L RR+ +A + + +PD Sbjct: 413 GKPYKSGYRRFALTQPGKPNDYQALRETLYRRFMRARQEEEALAEGRITPQQAKFLPLPD 472 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE--GEGFS 519 +IL+DGG GQ A+ V EL + G+AK E + P G Sbjct: 473 LILVDGGAGQAGVAREVLEELGYDIP-----VFGLAKE-------EEWIYPPHQAGNPII 520 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 LP SPALH++Q +RDE+H A+G HR++R K S L IEG+GP RR LL+ L Sbjct: 521 LPRSSPALHLLQRVRDEAHRFALGFHRRRREKESLRSLLSEIEGIGPARRSALLRAFPTL 580 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIF 605 + L ASVEE+A+VPG+++ AE ++ Sbjct: 581 EALARASVEELARVPGMTRPAAEAVY 606 >UniRef50_Q0F271 Excinuclease ABC subunit C n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F271_9PROT Length = 611 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/616 (39%), Positives = 363/616 (58%), Gaps = 33/616 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + +PGVYRM D VIYVGKA++L+KR+SSYF+ S +T A+V Q++ I +V Sbjct: 9 LTALPREPGVYRMLDHARKVIYVGKARNLRKRVSSYFQRQPESPRTIAMVRQVRDIAFSV 68 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T +E EAL+LEHN IK +PRYNVL++D K+YP+I LS + P+L M+RG + GEYFG Sbjct: 69 TPSEAEALVLEHNLIKQLKPRYNVLMKDSKTYPYILLSDEPFPKLTMYRGNRTLPGEYFG 128 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PFPN AV +TL ++Q +F +R CE++V+ NRSRPC+Q+QIGRC PC + +VS+ +Y + Sbjct: 129 PFPNAGAVHQTLHIMQSMFLLRDCEDAVFNNRSRPCMQHQIGRCSAPCCD-IVSKAQYRR 187 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 QV+ VR FL G+D+ +L +M+ A+ ++FE+AA +RD+I+A+R V + D Sbjct: 188 QVDEVRQFLRGRDNDLLKGWEQQMQQAADAMQFEQAAILRDRIRALRSVLAGSEGGDLPD 247 Query: 251 DLDVIGVA--FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D D I + A +AC+ V R G+ LG+ + ++ T+ E+ + ++ Sbjct: 248 DADGIVLIRHTTAVLACIGVR--RSGRDLGTHNI--RIDQATDAGEL--EILQSLLIERY 301 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSEL-AGRKINVQTKPRGDRARYLKLARTNAATALT 367 + P +IL++ + L ++ + G+K V + RG R ++L+ + A + Sbjct: 302 EKELPPADILVNTCKENIQELNRLIALIKPGKKTAVHSPVRGSRLQWLQQIGHSGAQIIA 361 Query: 368 SKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 S+ +Q + ALA +L + V +R+ D +H G Q VA+ G + YR Sbjct: 362 SR--KQESQQPAFAALAEMLAMEVVPERIAAVDNAHLGGTQMVAAITYAGWQGAEKDYYR 419 Query: 427 RYNITGIT----PGDDYAAMNQVLRRRYGKAIDDSKI--PDVILIDGGKGQLAQAKNVFA 480 RY + GI GDDY AM VL R+ +AI + I PD++LIDGG+GQL A Sbjct: 420 RYKLDGIAGQVIEGDDYGAMQAVL-ERFFRAIREDTIPCPDLMLIDGGRGQLGVALQCAT 478 Query: 481 ELDVSWDKNHPL-LLGVAKGADRKAGLETLF-----FEPEGEGFSLPP--DSPALHVIQH 532 + + H L L GVAKG R+ G ET++ G G L P S AL +I Sbjct: 479 DAGL-----HELKLAGVAKGDARRVGEETIWPGWTDSGAIGIGKPLKPGRHSAALLLIAR 533 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H A RK++ + TS L+T+EG+GP +R LLK+ GG++G++ A +++A+ Sbjct: 534 VRDEAHRFAGAYMRKRKKQSMFTSVLDTVEGIGPAKRISLLKHFGGIEGVKKAGRKQLAQ 593 Query: 593 VPGISQGLAEKIFWSL 608 PGIS LAEKIF SL Sbjct: 594 APGISDKLAEKIFLSL 609 >UniRef50_Q6AKB8 UvrABC system protein C n=3 Tax=Deltaproteobacteria RepID=UVRC_DESPS Length = 607 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/606 (37%), Positives = 348/606 (57%), Gaps = 18/606 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDV 68 L++ +PGVY M DA VIYVGKAKDL KRL+SY R S+ KT ++ +++Q+ Sbjct: 8 ILQSTPHKPGVYLMLDAKARVIYVGKAKDLVKRLTSYTRHSSSEHNKTTVMLKKVEQVKT 67 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGE 127 +T TE EAL+LE + IK ++PRYN++LRDDK+YP+I ++ G+ PR+ M R + Sbjct: 68 IITTTEKEALILEASLIKKHKPRYNIILRDDKNYPYIAVTVGEEWPRVMMVRRKRRDNSR 127 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGP+ + A+ TL L+ +FP+R C R R+RPCL QIG+CL PC G VS + Sbjct: 128 YFGPYSSATAMWATLKLIASLFPLRNCRGEKLRPRTRPCLNRQIGKCLAPCT-GNVSRKI 186 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS- 246 Y + V+ + L L GK +L +L +M AS+ L FE+A + RDQI+A++ EKQ V+ Sbjct: 187 YMENVDKILLLLQGKSRDLLAELKRQMLQASERLNFEQAGQFRDQIRALKTTLEKQLVAA 246 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 G + DV G V++LF+R G V GSRS+F + G + S+V+ + Q+Y Sbjct: 247 GHGKNQDVFGYVRSGTTVAVNILFVRDGLVSGSRSFFIEDYFGLD-SQVLSQTISQYY-- 303 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + P EILL F+ + LL++ L++ + ++ RGD +++A TNA Sbjct: 304 -DRETPPPKEILLPFSPENFELLSEYLADFTTHILQIKIPQRGDSTILVEMANTNARQLF 362 Query: 367 TSKLSQQSTVHQRLTALASVLKL---PEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 K ++ + ++ L+L PE +EC DIS+ G+ + S V F ++ Sbjct: 363 AEKEKKERSWQSLGKSIKEKLQLSRTPET--IECLDISNISGQHAIGSLVCFSGGEANKS 420 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 +R Y I I DDY M +V+ RR+ + I + +P++ ++DGGKGQL A V EL Sbjct: 421 RFRHYKIRTIEGPDDYGMMREVMERRFKRGIKEGNLPNLFVVDGGKGQLGMAMAVARELG 480 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 ++ N +G+AK +R E L+ LP SP L + IRDESH + I Sbjct: 481 IT---NELDWIGIAK--ERHEEGEKLYKPGRKNPILLPAHSPVLLYLMRIRDESHRYGIT 535 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 HRK R + +S L+ IEG+G R+++LLK +G L+ ++ AS++++ +V GI LA+K Sbjct: 536 FHRKLRNRATLSSELDEIEGIGDNRKKLLLKKIGSLKKIKEASLQKLQEVEGIGPLLAKK 595 Query: 604 IFWSLK 609 I+ SL+ Sbjct: 596 IYTSLQ 601 >UniRef50_Q3AFE5 UvrABC system protein C n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=UVRC_CARHZ Length = 607 Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/613 (38%), Positives = 340/613 (55%), Gaps = 38/613 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVT 69 +K + PGVY D G VIYVGKAK+LK R+ SYF+ KT ++ + + I+V Sbjct: 7 VKNLPDSPGVYLYKDEKGEVIYVGKAKNLKNRVRSYFQPPEKLLPKTRVMMEKARDIEVI 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 +T TE EAL+LE N IK Y+PRYN+LL+DDKSYP++ ++G+ PRL + R + G YF Sbjct: 67 ITSTEVEALILEQNLIKRYRPRYNILLKDDKSYPYLKITGEEFPRLLITRRVVNDGGRYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+P+ A+ ET LL+ IF R C +++ + RPCL + I +C PC G +S EEY Sbjct: 127 GPYPDAGALNETYKLLRSIFKFRTCTPTIFAQKKRPCLNFHIKKCSAPCA-GEISREEYF 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 +++E V FL G+ + ++ +L M AS NLEFE AA++RDQI A+ ++ KQ +S Sbjct: 186 KEIEMVVDFLEGRGENLIKKLKKEMAIASDNLEFERAAKLRDQILALEKILAKQKISRGQ 245 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 + DV+ VA + + IRQG +LG + Y G E E++ + Y + Sbjct: 246 RNADVVVVANRENLGVGLIFVIRQGNLLGQKVY--TFTGEMETGELLNQVLVTHY---GE 300 Query: 310 MRTLPGEILLDF--NLSDKTLLADSLSELA-GRKINVQTKPRGDRARYLKLARTNAATAL 366 + +P EI+L NL ++ L +S EL G+K RG++ LK+A N L Sbjct: 301 AKEVPVEIILSTRENLDEEFL--NSWFELKFGKKPKFTVPKRGEKFELLKMALENVNFTL 358 Query: 367 TSKL----SQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPL 421 K+ +Q + L L L LP V +R+E +DISH G TVAS VVF P+ Sbjct: 359 DEKIKLNEKKQLLNEKALMDLKEALNLPVVPRRIEGYDISHLAGTGTVASMVVFIDGEPV 418 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI--------DDS--KIPDVILIDGGKGQ 471 + +YRR+ I DDY AM + + RR+ K + D S ++PD++LIDGGKGQ Sbjct: 419 KGKYRRFAIRS-AANDDYTAMFEAVLRRFKKYLALQEEGGADGSFEELPDLVLIDGGKGQ 477 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L A + E + LLG E +F + + L D L ++Q Sbjct: 478 LNAAMDALKETN---------LLGKFTVIALAKEQEEIFLPGKKDSLLLTQDREGLKLLQ 528 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H A G KKR K S LE +EG+GPKRR+ LL G ++ LR A+VEEI Sbjct: 529 RVRDEAHRFARGYQEKKRVKTL-ASLLEQVEGIGPKRRKQLLNKFGSIKNLREATVEEIT 587 Query: 592 KVPGISQGLAEKI 604 VPGI++ +AE++ Sbjct: 588 AVPGITREIAERL 600 >UniRef50_D1R706 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R706_9CHLA Length = 614 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/606 (37%), Positives = 347/606 (57%), Gaps = 23/606 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK-TEALVAQI 63 FD K L + PGVY M + G ++YVGKAK+L+ R+ YF ++ R+ LV QI Sbjct: 3 FDPKT-LSLYPNHPGVYLMKNRTGMILYVGKAKNLRTRIRQYFMTSGDGREMIPFLVPQI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HRG 120 + I+ +E EALLLE + IK ++P+YN LL+DDKSY + ++ + P L++ +RG Sbjct: 62 ESIETISVTSEKEALLLESHLIKKHKPKYNALLKDDKSYVALKINVKNPWPMLSLERYRG 121 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 A G YFGP+ + A R TL LL ++FP+RQC ++ + R+RPC+ Y + RC+ PCV+ Sbjct: 122 KPKADGVYFGPYTHAGAARRTLDLLHRLFPLRQCSDAEFARRTRPCILYDMKRCIAPCVQ 181 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 ++EEY QV+ FL G++ ++L ++ MET ++NLEFE+A + D I+ + + Sbjct: 182 K-CTKEEYQIQVDRTIKFLRGQNKEILQEMYQEMETYAENLEFEKAGKSLDTIRYIEKTI 240 Query: 241 EKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY-FPKVPGGTELSEVVET 298 E Q+V S +G D D +G+ + L R+G++ S+S+ F K+ + +E++ + Sbjct: 241 EPQYVDSVSGKDADALGIYRQGEDVMLCQLLFREGRLTSSQSFNFTKI--ADDDAELLTS 298 Query: 299 FVGQFYLQGSQMRT-LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 FV Q Y Q R LP EILL + D+ L + LSE RK+ V RG ++ + + Sbjct: 299 FVLQHY----QNRDFLPHEILLPIEIEDEVALTELLSENRARKVQVYAPKRGGKSVLIDM 354 Query: 358 ARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFD 416 A+ NA + + ++Q+ L A+ L KR+EC D SH G + V+S +VF Sbjct: 355 AQANAEASFKKEKNEQTLRENILLAIQEQFHLTNYPKRIECIDNSHIAGTEHVSSVIVFT 414 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAK 476 YR Y + P DDY AM +VL RRYGKA D++ +PD+++IDGGKG L A Sbjct: 415 DGKKDTRNYRTYTLKQAGPSDDYGAMREVLTRRYGKAKDENDLPDLLIIDGGKGHLNIAL 474 Query: 477 NVFAELDVSWDKNHPLLLGVAKGA---DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 V ELD+ ++G+AK DR LE +F + L SP L ++Q I Sbjct: 475 KVLVELDIISVN----VIGIAKEQGRHDRGLTLEQVFLPNVKDPLILKVTSPILFILQQI 530 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H I HRK+ K S L+ + G+GP +++ LLK+ G ++ ++ AS EE+ K+ Sbjct: 531 RDEAHRFVIKFHRKRMQKRTIKSILDDVPGIGPAKKKALLKHFGSIKKIKEASDEELKKM 590 Query: 594 PGISQG 599 GIS+G Sbjct: 591 KGISEG 596 >UniRef50_C6XFB9 Excinuclease ABC subunit C n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFB9_LIBAP Length = 616 Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/608 (35%), Positives = 340/608 (55%), Gaps = 33/608 (5%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEA 77 PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT TE EA Sbjct: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 Query: 78 LLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH--PRLAMHRGAKHAKGEYFGPFPNG 135 LLLE N IK +PR+N+LLRDDKS+P+I ++ D H P L HR + +G YFGPF + Sbjct: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILIT-DKHKIPALYKHRDSSTIQGSYFGPFASV 128 Query: 136 YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYV 195 AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC G +S E+Y + V Sbjct: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEA 187 Query: 196 RLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVI 255 + FLSG + + ++ M A+ ++E A RD++ A+ + + + +D Sbjct: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--DSIYNRMDCF 245 Query: 256 GVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPG 315 + + +AC+ F G+ G+ ++F K + ++++ F+ QFY + P Sbjct: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 Query: 316 EILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQST 375 ILL + +LL S + G K+ + +G++ + ++ A NA + T KLS + + Sbjct: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 Query: 376 VHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TG 432 L LP + KR+E +D SH MG V VV NG ++ +YR++N+ Sbjct: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 Query: 433 ITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKN 477 + DD A M VL RR+ + I + + PDV+++DGGKGQL+ A+ Sbjct: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V +L+V +N ++ +AKG R AG+E FF +GE L P L+ IQ +RDE+ Sbjct: 482 VLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEA 537 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS Sbjct: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 Query: 598 QGLAEKIF 605 + +A KI+ Sbjct: 597 KKIACKIY 604 >UniRef50_D0RRP8 Excinuclease ABC subunit C n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRP8_9RICK Length = 612 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/604 (34%), Positives = 340/604 (56%), Gaps = 27/604 (4%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 K ++ PGVY+++D +IYVGKAK+L RLS+Y S+ +TE ++A +ID T Sbjct: 16 KLCSNSPGVYQVFDEKNKIIYVGKAKNLPNRLSNYSSSSTQPIRTERMIASTNRIDTIST 75 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEYFG 130 E+EALLLE N IK +PRYNVLL+DDKS+P+I + S +P++ RG + K YFG Sbjct: 76 LNESEALLLEANLIKKNKPRYNVLLKDDKSFPYIQIRSSHDYPQITKFRGKHNDKDIYFG 135 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PF + + T+ +LQK+F IR C+++ ++ RSRPC+ YQI RC GPC G +++ EY++ Sbjct: 136 PFASIASANWTIKMLQKVFQIRVCDDNTFKGRSRPCILYQIKRCSGPCT-GEITKSEYSK 194 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-SNTG 249 V+ FL+GK + ++ ME S L FE+AA +RD+I+++ + Q + N Sbjct: 195 TVDECSSFLNGKSRDIQKKMSQEMEKESDRLNFEKAAILRDRIKSLTYIQSSQNIQKNNL 254 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 D D+I + CV + F R + GS+ ++PK ++++F+ QFY + Sbjct: 255 KDADLIVSHRKENITCVVIFFYRSKQNWGSQYFYPKHDHEDSDEHILKSFLTQFY----E 310 Query: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 + P E++L+ + L+ + + +KI ++ P+ +K A NA L K Sbjct: 311 NKEPPSELVLNLTPENHELIKSAFEKKYNKKILIKISPKNS---MVKNAVKNAQEQLQIK 367 Query: 370 LSQQSTVHQRLTALASVLKL---PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 + Q + L ++ KL P + +E +D SH G+ + + + F +G ++ YR Sbjct: 368 ILSQEKNNDLLISMGEKFKLGFTPSL--IEVYDNSHNQGDSNIGALIAFGKDGFIKNRYR 425 Query: 427 RYNI--TGITPGDDYAAMNQVLRRRYGK--AIDDSKIPDVILIDGGKGQLAQAKNVFAEL 482 ++NI T I DDY M +V++RR+ K ++ D +PD++LIDGGKGQ + +N +L Sbjct: 426 KFNIKNTKIKSNDDYGMMTEVIQRRFSKVDSLTDENVPDLLLIDGGKGQYSVVRNKLNDL 485 Query: 483 DVSWDKNHPL-LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 H L ++ ++KG +R G E F E L + P L + Q IRDE+H A Sbjct: 486 GF-----HGLKIIAISKGKERNKGNEK--FISEDGVIELDKNDPVLFLTQRIRDEAHRFA 538 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I HRKK+ K S L+ I+G+G KR++ LL + G + + AS+++I + GI+ A Sbjct: 539 ITTHRKKKTKQMFKSPLDEIDGIGSKRKKALLSHFGSAKAIEGASLDDIKSIDGINDSSA 598 Query: 602 EKIF 605 EK++ Sbjct: 599 EKVY 602 >UniRef50_C8QX27 Excinuclease ABC, C subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX27_9DELT Length = 610 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 233/596 (39%), Positives = 326/596 (54%), Gaps = 14/596 (2%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVTVTHTETE 76 PGVY M DAGG V+YVGKA L+KRL SY R + A R KT ++ ++ ++D +T TE E Sbjct: 14 PGVYLMRDAGGQVLYVGKAVSLRKRLQSYSRIDPAGRSKTSVMLGKVAKVDTVLTRTEKE 73 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNG 135 AL+LE IK ++PRYNV+LRDDKSYP + ++ + PRL M R YFGP+ + Sbjct: 74 ALILEAGLIKQHRPRYNVILRDDKSYPHLKVTVQEEWPRLLMTRRVSKDGARYFGPYASP 133 Query: 136 YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYV 195 A+ ETL LL +FP+R+C+ + R CL +Q+GRC PC+ G ++ E Y Q+V V Sbjct: 134 AAMWETLRLLNSLFPLRRCKAKKFAPGQRACLNHQMGRCPAPCI-GAITPEAYRQRVSQV 192 Query: 196 RLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-SNTGDDLDV 254 L G+ ++ +L RM+ A+ L FEEAA +RDQI+A+ + EKQ V DLDV Sbjct: 193 LAILEGRKRELTRELTGRMQEAAAGLNFEEAAALRDQIRALNQTLEKQVVLGRERVDLDV 252 Query: 255 IGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLP 314 G+ G +LFIR+G + R +F P G E EV+ + +FY R +P Sbjct: 253 FGLVRRHGQVAAALLFIREGALADKREFFLAEPVG-EDDEVLAELLRRFYEH--PQRPIP 309 Query: 315 GEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQS 374 ILL L + LSE G + + RGD+ + +A NA L ++ QQ+ Sbjct: 310 RSILLPLPAEGAAALTEWLSEKRGGPVRLLVPRRGDKKALVTMAGDNAGQLLAAREKQQA 369 Query: 375 TVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGI 433 + L+L +R+EC DIS+ G + V S V F + YRR++I + Sbjct: 370 GWLSLGEEIRRALRLTSSPQRIECLDISNLGGREAVGSLVSFRQGEKESSRYRRFHIRNL 429 Query: 434 TPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 DDYA M +VL R +A +PD++++DGGKGQL A+ V AEL + P L Sbjct: 430 ATPDDYAMMREVLLRHLCRAAAAETLPDLLVLDGGKGQLGVAQAVLAELALP----GPEL 485 Query: 494 LGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 + +AK DR+ E LF L SP L IRDE+H I HR+ R + + Sbjct: 486 VSIAK--DREGSGERLFRPGRKNHLKLAQHSPVLLFFMKIRDEAHRFGITFHRRLRRQKQ 543 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 S LE I GVGP R+Q LLK +G L G+ A+ E++A VPGI LA I L+ Sbjct: 544 LVSRLEEIPGVGPGRKQALLKQLGSLAGVAAATPEQLAAVPGIGPELAAVIHRHLQ 599 >UniRef50_C0QET6 UvrABC system protein C n=2 Tax=Desulfobacteraceae RepID=UVRC_DESAH Length = 606 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 226/598 (37%), Positives = 346/598 (57%), Gaps = 17/598 (2%) Query: 17 QPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVTVTHTET 75 PGVY M D GT+IYVGKA +LKKRL+SYF R KT L+ ++ D+ VT TE Sbjct: 15 NPGVYLMKDKRGTIIYVGKALNLKKRLASYFARETGHDMKTGVLLKKVVDFDLIVTATEH 74 Query: 76 EALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEYFGPFPN 134 EAL+LE IK + PRYNV+L+D KSYP + + + P L + R YFGP+ + Sbjct: 75 EALILESTLIKKHSPRYNVILKDGKSYPCLRIDTSKPFPALEVVRKIGDDNAVYFGPYSS 134 Query: 135 GYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEY 194 +VR T+ + KIF +R+C + + NR+RPCL YQI CLG C VS +EYA+ V Sbjct: 135 VQSVRSTIKQVNKIFKLRKCRDVQFANRTRPCLNYQINACLGACCNR-VSRQEYARVVGD 193 Query: 195 VRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG-DDLD 253 V LFL G+ ++ +L M+T + FE AA+IRD I A++ E+Q V +T D D Sbjct: 194 VILFLKGRAPDLINRLKFEMQTEADLEHFERAAQIRDTILAIQTTLERQVVVSTDRTDRD 253 Query: 254 VIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTL 313 VI A + A V +LF+R G ++GSR+Y P G + + E+++ FV +Y + + Sbjct: 254 VIACAINGEKAVVTILFVRSGNLVGSRNY-PFDTGLSGVPEILDAFVRHYY---ERSLFI 309 Query: 314 PGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ 373 PG+IL+ + + L+ D L E G+++++ RGD+ R +++A NA L LS Q Sbjct: 310 PGQILIAEKIENHGLVQDLLIEKRGKRVSLVVPERGDKRRLVEMALVNAQKELEKNLSIQ 369 Query: 374 STVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG 432 + + LTAL ++L + +R+ECFD S+ G V+S VVF ++EYR++ I Sbjct: 370 NEAWETLTALQTILGMSVYPRRIECFDNSNMAGTDPVSSMVVFVDGLACKSEYRKFIIRD 429 Query: 433 ITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL 492 DDYA M +VL RR ++ +PD++++DGGKGQL+ A V L + +N Sbjct: 430 AKENDDYACMTEVLTRRLSST--EAPLPDLLVVDGGKGQLSMAVAVLKSLGL---ENRFQ 484 Query: 493 LLGVAKGADRKAG--LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA 550 + G+AK D K G + ++ + AL+++Q +RDE+H AI RK+R+ Sbjct: 485 VAGLAK-KDAKLGEVYDKIYLPGRANPVNTRGALKALYLVQRLRDEAHRFAITFQRKRRS 543 Query: 551 KVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 K TS L+ + G+G KR+Q+L+ G+ + A+VEE+A +PG++ A+++ +L Sbjct: 544 KRAGTSVLDAVPGIGKKRKQVLMTTYKGISRMGQATVEELASLPGMTLAAAQQVKSAL 601 >UniRef50_Q2GJJ1 UvrABC system protein C n=6 Tax=Anaplasma RepID=UVRC_ANAPZ Length = 614 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/619 (35%), Positives = 345/619 (55%), Gaps = 30/619 (4%) Query: 1 MSDQFDA--KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEA 58 ++D F A KA S PGVY+M+ ++YVGKAKDLKKRLSSY N S Sbjct: 8 LNDAFYALKKATCSVRKSVPGVYKMFGTEDRLLYVGKAKDLKKRLSSYLSINRMSVNVYT 67 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH 118 +V QI ++++TVT ETEALLLE IK +P+YN+++RDDK YP+I S +PR+ +H Sbjct: 68 MVKQIVRLEITVTENETEALLLEAKLIKSLKPKYNIIMRDDKFYPYILFSKHKYPRIVLH 127 Query: 119 RGAKHAKGEY---FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCL 175 R K ++G Y +GPF + R +A ++K F +R C ++ + R+RPC++Y+I C Sbjct: 128 R-EKRSEGRYTGLYGPFLSSVMTRHIIATIKKAFLLRSCPDNFFATRARPCIEYEIKNCS 186 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC++ ++EE+YA+ V+ L+G+ ++ +L M S N ++E A RD++ A Sbjct: 187 APCMQK-ITEEDYAKAVQMAHKALTGQSKEIQCELFEMMCRFSNNQDYESAIVCRDRLHA 245 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 ++ + E F + D+D I V + C+ V+F R G GS+ YF + G ++ Sbjct: 246 LKSMKECMGFQTGIHGDVDFIAVYKRQDLYCMQVVFFRDGVNYGSQPYFIESVGNASDAD 305 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDF-NLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 +V F+ Q Y P + +D + D +++ ++ +L R+++++ D + Sbjct: 306 IVNMFMLQIY------NDFPSVVYVDLPSDYDTNIMSTAIKQLMKREVDIRLPATRDELK 359 Query: 354 YLKLARTNAATALTSKL--SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVAS 411 + LAR A AL ++ + Q T + +LK PE R+E +D SH G Sbjct: 360 AMGLARNYAMEALNRRVRNTAQDTDLEEFATFFDLLKAPE--RIEIYDNSHISGTHPYGV 417 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQ 471 VV +G L+ EYR++ I +T GDD + M++V+ RR+ K I D +PD ILIDGG+GQ Sbjct: 418 MVVCGKDGLLKKEYRKFKINTVTNGDDCSMMHEVISRRF-KEIPDV-LPDFILIDGGRGQ 475 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 + + L + + +AKG R AG E +F GE SL P S +H + Sbjct: 476 RSAVYGELSRLGIPF-------ACIAKGPGRVAGTEVFYFS-NGEKLSLDPASKLMHFLC 527 Query: 532 HIRDESHDHAIGGHRKKR-AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 +RDE+H AI HRK R K++ ++ L I G+G + + +L Y G +Q +++A VEEI Sbjct: 528 RLRDEAHRFAITSHRKSRDGKLQFSTLLNDIPGIGKTKGKAILAYFGSIQAMKHARVEEI 587 Query: 591 AKVPGISQGLAEKIFWSLK 609 +KVPGIS LA+++ LK Sbjct: 588 SKVPGISLKLAKRVADYLK 606 >UniRef50_A5UY12 Excinuclease ABC subunit C n=5 Tax=Chloroflexaceae RepID=A5UY12_ROSS1 Length = 669 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 249/666 (37%), Positives = 360/666 (54%), Gaps = 78/666 (11%) Query: 6 DAKAF---LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVA 61 D AF L+ V PGVY +A G +IYVGK+K L+ R+ SYF ++ KT LV Sbjct: 11 DPTAFEERLRAVPLAPGVYLWKNAQGKIIYVGKSKRLRDRMRSYFNQTGDPYGKTARLVE 70 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 QI V VT TE EALLLE IK ++PR+NVLL+DDKSYP+I ++ +T PR+ R Sbjct: 71 QIADFQVIVTSTELEALLLEMTLIKQHRPRFNVLLKDDKSYPYIKVTLHETWPRIFATRN 130 Query: 121 AKHAKG-EYFGPFPNGYAVRETLALLQKIFPIR---QCENSVY---RNRSRPCLQYQIGR 173 + +G YFGP+ + AV TL L ++F R +C + + R +PCL Y I R Sbjct: 131 PRWEEGARYFGPYSSAGAVYRTLDQLNRLFAFRPPSRCPDDKFNRHRRMGKPCLYYDIKR 190 Query: 174 CLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQI 233 CLGPCV GLV++EEY +E V FL GK D V+ L +ME A++ L+FE AAR+RD I Sbjct: 191 CLGPCVPGLVNQEEYRATIESVCRFLEGKSDLVVKTLRRQMEEAAERLDFERAARLRDSI 250 Query: 234 QAVRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 + + ++++Q V D D DVIG+A + GMA V VL IR GK++ + S+ + G Sbjct: 251 RDIELISQRQQVLRHDDADQDVIGLAREEGMAVVQVLCIRAGKLISAESFPLQNAEGERN 310 Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRA 352 +++ +F+ QFY LP +LL L + ++ L++ AGRKI + T RG++ Sbjct: 311 EDLLASFLTQFY---DTAAELPAALLLPMPLDEPAVIEQWLAQKAGRKITLHTPQRGEKR 367 Query: 353 RYLKLARTNAATALTSKLSQQSTVHQRLTA-------LASVLKLPEVKRMECFDISHTMG 405 R ++LA NA L Q QR A L + LP R+ECFD+S+ G Sbjct: 368 RLVELAEQNARQKLEELRLQWLNSEQRAVAGLSEVRDLLGLSALP--TRIECFDVSNIQG 425 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKA------------ 453 V + VVF+ P ++ YR++ I + +D A++ ++LRRR+ +A Sbjct: 426 SHAVGAMVVFERGEPKKSRYRKFRIKTVQGANDVASIQEILRRRFRRAAMVIGEEEQQSE 485 Query: 454 -------------IDD----------------------SKIPDVILIDGGKGQLAQAKNV 478 DD +++PD+ILIDGG GQL A Sbjct: 486 AQRMNGSVNGPAEADDQEEAEKTDTPGSHADIERQETWAELPDLILIDGGVGQLNGAIQA 545 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 +L +H ++GV KG +R L + L DS AL +I+ I +E+ Sbjct: 546 LRDLRF----DHIPVVGVVKGPNRDRF--DLLLPGASDVIVLERDSAALRLIRMIDEEAD 599 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A HRK R+K +S LE I G+GPKRRQ+LLK G L+G+RNA+V+E+A VPG+++ Sbjct: 600 RFAKDYHRKLRSKSATSSRLEEIPGIGPKRRQLLLKRFGSLEGIRNATVDELAAVPGMTR 659 Query: 599 GLAEKI 604 AE++ Sbjct: 660 KAAEEL 665 >UniRef50_A0LHP7 Excinuclease ABC, C subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHP7_SYNFM Length = 677 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/603 (38%), Positives = 341/603 (56%), Gaps = 20/603 (3%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQIDVTVTHTETE 76 PGVY DA G V+YVGKA DL+KR++SYF+S KT AL+ + ++ VT E E Sbjct: 79 PGVYLFKDASGAVLYVGKAIDLRKRIASYFKSTGPIPVKTRALMGKAADMEYVVTSNEKE 138 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYFGPFPNG 135 ALLLE + IK ++PRYNV+LRDDK+YP + + + PRL + R + YFGP+ + Sbjct: 139 ALLLEASLIKKHRPRYNVVLRDDKNYPALRIDPREPFPRLEVVRRFQRDGALYFGPYHSA 198 Query: 136 YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYV 195 YA+RETL LL ++FP+R C+ R RPCL Y +GRCLG C G VS E+Y + V+ V Sbjct: 199 YALRETLRLLHQLFPLRLCKGKRLLARERPCLNYSLGRCLGACA-GRVSPEDYHKMVDEV 257 Query: 196 RLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTGDDLDV 254 LFL GK D + QL RM A++ L FE AA RD++Q + + EKQ VS+ + DV Sbjct: 258 VLFLQGKTDVLQQQLRRRMADAAEALNFELAAYYRDRLQGIASMLEKQHIVSDRFLNQDV 317 Query: 255 IGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLP 314 IG+ A + +LF+R+G + G R + + G E E++ F+ QFY + R +P Sbjct: 318 IGLHVGEEGAELAILFVRKGTLTGQRDFDLRDAQG-EPMELLTAFIQQFYRED---RYIP 373 Query: 315 GEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQS 374 EI++ + + LL + L+EL G+++ V RGDR L++A NA TS+ Q Sbjct: 374 DEIVVPAPVEAEALLEEWLTELKGKRVRVWAARRGDRRELLEIAGKNARERYTSRRKWQK 433 Query: 375 TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGI 433 L L +LKLP RM C DIS+ G V + VVF P + YRRY I G Sbjct: 434 RDVTMLQNLQRILKLPRAPLRMACVDISNIQGRHAVGAVVVFSEGSPDKDSYRRYRIHGK 493 Query: 434 TPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 T DD A M +V+ R ++ D++++DGGK QL + + + EL + + PL+ Sbjct: 494 TEPDDPAMMAEVIERLLKNDAPLAESLDLLVLDGGKSQLNRIRRLMEELGAA--EGLPLI 551 Query: 494 -LGVAKGADRKAGLETLFFEPEGEGFSLP------PDSPALHVIQHIRDESHDHAIGGHR 546 + K DR L+ + G P PD LH++Q +RDE+H AI ++ Sbjct: 552 SIAKEKETDRGEKGRGLYEKIYLPGRKNPLFLHHYPD--ILHLLQRLRDEAHRFAISHYK 609 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 S+L+ + GVGPKR ++L+++ G ++ LR ASVE+IA+VPG+ +A IF Sbjct: 610 SLHRNDLLASALDAVPGVGPKRSRLLIRHFGSMKALREASVEDIAQVPGVPPTVARTIFN 669 Query: 607 SLK 609 L+ Sbjct: 670 ILR 672 >UniRef50_Q3ZYA3 UvrABC system protein C n=5 Tax=Dehalococcoides RepID=UVRC_DEHSC Length = 607 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/608 (35%), Positives = 341/608 (56%), Gaps = 28/608 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVT 69 + ++ PGVY M +A G +IYVGKA LK R+ SYF + + KT LV+QI +++ Sbjct: 10 IASLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLTPKTCQLVSQINELEYL 69 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 +T +E EAL+LE N IK ++P +NV L+DDK +P++ ++ + PR+ + R G Y Sbjct: 70 ITGSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRY 129 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF N +VR TL +L+++F R C + SRPCL+Y I +CL PC G +S+ +Y Sbjct: 130 FGPFANTRSVRHTLQVLKELFRFRSCNRTEPEKHSRPCLEYDIHQCLSPCT-GKISKSDY 188 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE-KQFVSN 247 + LFL GK DQVL LI M AS L++E AA RDQI +++ V E +Q + Sbjct: 189 DHLISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAAR 248 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 + D I A + ++ V V FIR+GK++G S+ + + +++ F QFY Sbjct: 249 VTGEQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEFAKQFYHSS 308 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL- 366 +Q +P +I+ + +SD+ +L LS+ G K+++ RG + + NA L Sbjct: 309 TQ---IPPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPKELINIVAENAREQLK 365 Query: 367 ---TSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 LS T+ L L + L L +R+E +DIS+ G V S VVF+ P + Sbjct: 366 QARIKNLSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQK 425 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD------SKIPDVILIDGGKGQLAQAK 476 A YRR+ I + DD++ + +V+ RR+G+ + +++P ++LIDGGKGQL+ K Sbjct: 426 AHYRRFRIKTVKGADDFSMLKEVISRRFGRVHREDAGESFARLPSLMLIDGGKGQLSSVK 485 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 +L + ++G+AK E ++ + E L +SPAL ++Q +RDE Sbjct: 486 ETLDKLGLEGQA----VIGLAKE------FEEIYLPHKSEPIRLAANSPALQLLQRVRDE 535 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H A+G H R K TS+L+ I GVGP RR++L+K G + G+R AS E++++V GI Sbjct: 536 AHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFEKLSQVKGI 595 Query: 597 SQGLAEKI 604 +Q LA I Sbjct: 596 NQALALSI 603 >UniRef50_D0LVJ3 Excinuclease ABC, C subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVJ3_HALO1 Length = 689 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 238/646 (36%), Positives = 362/646 (56%), Gaps = 61/646 (9%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR--KTEALVAQI- 63 +K F + + + PGVY M D G V+YVGKAK+L+ R+ YFR +R L+A++ Sbjct: 10 SKEFFERIPTAPGVYLMKDRSGRVVYVGKAKNLRTRVRQYFRPGADARFFVAAGLLARVL 69 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAK 122 ID V E EALLLE++ IK +QPR+N+ LRDDK Y + + + +PR+ + R + Sbjct: 70 ADIDTVVVDNEKEALLLENHLIKKHQPRFNINLRDDKQYLVLRIDPNADYPRVEVVRNIR 129 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 + YFGP+ + + RETL LL + F +R C + V R R+RPCLQYQI RC GPCV Sbjct: 130 DDQARYFGPYHSATSCRETLRLLNRHFQLRTCTDHVLRTRTRPCLQYQIKRCPGPCVYP- 188 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V + YA+QV+ V +FL+GK+DQ++T+L RM + ++ EFE AAR+RD IQAV + + Sbjct: 189 VERDAYAEQVDDVMMFLAGKNDQLVTRLRERMSSYAEREEFEAAARLRDSIQAVDKTLAR 248 Query: 243 Q-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY------FPKVPGGTELSEV 295 Q V D DV G+ + + + VLFIR GK++G RS FP +V Sbjct: 249 QNVVQEQFLDQDVFGMWREGDVVEIAVLFIRNGKLVGRRSLRQGDQAFPD-------GQV 301 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + FV Q+Y G+ +P EI++ L D+ ++A+ L+ L G+K+ + R RAR L Sbjct: 302 LANFVQQYYATGT---LVPDEIVVGVELDDEAVIAEWLAGLRGKKVKILHPQRSTRARLL 358 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVV 414 LA NAA + S+ ++ L L + L L + +R+ECFDI+H G TVAS VV Sbjct: 359 ALAEKNAAASAASRQNRDRDAEDTLRKLQARLGLKRLPRRIECFDIAHIQGSVTVASMVV 418 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY------------------------ 450 F R+ YR++ + +T DD+AAM +VL RR+ Sbjct: 419 FVDGVAERSLYRKFKVKSVT-NDDFAAMYEVLSRRFRRALAAQAEAEATAEADGVGEGEG 477 Query: 451 ------GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL-LLGVAKGADRK 503 GK ++PD++++DGGKGQL QA A+L + ++G+AK +R+ Sbjct: 478 EGADGTGKTGSSWEMPDLLVVDGGKGQLGQALTALADLGIKITAEKGFDVIGLAK--ERE 535 Query: 504 AGLETL----FFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLE 559 E L + E L P++ L+++ +RDE+H A HR++R + SSL+ Sbjct: 536 ISGEALPDRVYLRNRKEAVRLRPNTAELYLLSRVRDEAHRFANTFHRERRNRTALRSSLD 595 Query: 560 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 I G+G KRR+ LL+ +G L+ ++ AS+EE++ V G+ + AE ++ Sbjct: 596 DIPGIGAKRRRALLRELGSLKAIKQASLEELSAVSGMGRKAAEAVY 641 >UniRef50_B8I8F2 UvrABC system protein C n=2 Tax=Clostridium RepID=UVRC_CLOCE Length = 613 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/621 (33%), Positives = 358/621 (57%), Gaps = 33/621 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQI 63 FD + LK + + GVY M DA G VIYVGKA LK R+ YF+ + K +A+V+++ Sbjct: 2 FDIQEELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYFQQSANHPPKVQAMVSKV 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + V +E EAL+LE IK Y+P+YN+LL+DDK YP+I ++ + +PR+ R + Sbjct: 62 SEFEYIVVDSEVEALMLECTLIKKYKPKYNILLKDDKHYPYIKVTLNEEYPRILKTRRVE 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVE 180 YFGP+ +G+AV +T+ L+K+F ++ C ++ R+ ++RPCL Y + +CL PC + Sbjct: 122 KDGARYFGPYSSGFAVNDTIDTLKKLFSLKTCNKNLPRDIGKTRPCLNYHMKQCLAPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G V+ +EY + ++ + FL G+ D+++ L +META++ L+FE+AA++R++I ++++++ Sbjct: 181 GGVNRDEYREMMKKICRFLGGQYDEIINDLRIQMETAAEQLDFEKAAQLRNKITSIKQLS 240 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E Q V T +D D+IG + D+ C+ V F+R G+V+G + + + + TF Sbjct: 241 ESQKVLFTDLEDRDIIGYSADSTDLCIQVFFVRNGRVIGREHFIFEGEANEDKGYSLSTF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY ++++ +P EI+L + D +A L+E G K+ ++ RGD + + + Sbjct: 301 IKQFY---TKVQYVPSEIVLQSEVDDSETIAKWLTEKRGFKVALRVPQRGDLVKLVHMVS 357 Query: 360 TNAATALT---SKLSQQSTVHQR-LTALASVLKLPEV-KRMECFDISHTMGEQTVASCVV 414 NA L + S++ TVH + L +L L E R+E +DIS+T + VAS VV Sbjct: 358 ENAEITLKLHRERQSREGTVHSEGMAQLVKLLGLEEAPARIESYDISNTGSSEIVASMVV 417 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKIPDVIL 464 F+ P R EYR++ + I +DY +M + L RR +A + SK+PD+IL Sbjct: 418 FENGRPARQEYRKFKMKSIEQQNDYGSMQETLFRRLNRAKREKEEGTENAKFSKLPDLIL 477 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGG + A+ V EL ++ + G+AK DR ++ G + L + Sbjct: 478 VDGGSNHVNAARQVVEELGYNFK-----IAGMAKD-DRHRTKSLVYM---GNEYELATNM 528 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 P L I I+DE+H A+ +RK R K S L+ IEG+G R++ L+K+ + +R Sbjct: 529 PLLRFITEIQDETHRVAVEYNRKLREKRYVRSELDEIEGIGQTRKKALIKHFKSVAAIRK 588 Query: 585 ASVEEIAKVPGISQGLAEKIF 605 A + ++ +V GIS+ +A+ I+ Sbjct: 589 ADIAQLQEVNGISEKIAKNIY 609 >UniRef50_Q2LR71 UvrABC system protein C n=1 Tax=Syntrophus aciditrophicus SB RepID=UVRC_SYNAS Length = 618 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 221/599 (36%), Positives = 336/599 (56%), Gaps = 25/599 (4%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEA 77 PGVY M DA G ++YVGKAK+LK R +YF + LV++I I+ +T TE EA Sbjct: 17 PGVYLMKDAAGKILYVGKAKNLKSRTRAYFSGTDSRAMIPFLVSRIHDIEFILTETEKEA 76 Query: 78 LLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGY 136 L+LE+N IK + PRYN+ RDDK+Y I + PR + R + +YFGP+P+ Sbjct: 77 LILENNLIKEHHPRYNICFRDDKAYFNIRADLNEPFPRFQLVRRPRKDGAKYFGPYPSSA 136 Query: 137 AVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVR 196 + RETL LQ IFP+R C ++ ++R+RPCL+YQI RCL PCV G ++ E+Y Q V Sbjct: 137 SARETLQFLQSIFPLRTCRDAELKSRTRPCLEYQIKRCLAPCV-GRINSEDYLQMVRDGV 195 Query: 197 LFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTGDDLDVI 255 FL G+ + +L +L RM+ A++ + +EEAA +RD+I+A+ E+Q VS T D D+ Sbjct: 196 SFLEGRGNNLLRELRERMKMAAEQMNYEEAAFLRDRIRAIEETLERQRMVSMTFKDQDIF 255 Query: 256 GVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPG 315 G+ + + V +L IRQGK+LGSR P + E ++++ + + Q+Y Q +P Sbjct: 256 GLYREGHLIQVCILLIRQGKILGSR-LLPLLKFEGETADMLSSLLMQYY---DQSVDIPQ 311 Query: 316 EILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQST 375 EIL+ ++ D+ ++ + L E G+ +++ +G L +A NA + Sbjct: 312 EILIPASIEDRQVIREWLEEKRGKGLSILIPRKGRGLELLHIAEQNAEHGFKMERKSLDD 371 Query: 376 VHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGIT 434 + L L L L R +E FDIS+ G VA+ V F PL++ YRR+ I + Sbjct: 372 SDESLRLLMERLHLRRFPRKIEAFDISNIGGRLAVAAMVTFQDGRPLKSGYRRFRIRTVH 431 Query: 435 PGDDYAAMNQVLRRRY-GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 DDYA M + L+RRY GK +PD+I++DGGKGQLA A ++ +L +S + Sbjct: 432 GADDYAMMYEALKRRYQGK----ENLPDLIVVDGGKGQLAVAFSLLKDLSISGQD----V 483 Query: 494 LGVAK----GADRKAGL----ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 +G+AK G + G+ + ++ + E L L ++Q IRDE+H A+ H Sbjct: 484 IGLAKERVNGVTVQGGVNKSEDRVYLPHKKEALYLSRWPAVLFLLQRIRDEAHRFAVSYH 543 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 R + + S L+ I GVG R++ LL G L +R A+VEE+ +V GI + L EKI Sbjct: 544 RSLKTRSDFMSLLDDIPGVGEVRKKALLLSFGDLARIREATVEELTQVEGIGKDLGEKI 602 >UniRef50_B7AWB5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AWB5_9BACE Length = 640 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 224/652 (34%), Positives = 357/652 (54%), Gaps = 68/652 (10%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS--NLASRKTEALVAQ 62 FD + LK + S+PGVY M+D +IY+GKA LK R+ YF+S NL S K + +V+ Sbjct: 2 FDIEEELKKLPSKPGVYIMHDKTDAIIYIGKAVSLKNRVRQYFQSSRNL-SVKIQHMVSN 60 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 I + +T +E EAL+LE N IK ++P+YN +L+DDKSYPFI ++ + +PR+ R Sbjct: 61 IDHFEYIITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEKYPRVLFARSM 120 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCV 179 K K YFGP+ + AV++T+ LL +++ IR C + + + RPCL Y I +C PC Sbjct: 121 KKDKSRYFGPYTSAGAVKDTIELLCRLYRIRTCSRKLPADMCKDRPCLNYHINQCSAPC- 179 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 +G +SEEEY + V V FL+G ++L +L +M AS +E+E+AA+ RD I +V+++ Sbjct: 180 QGYISEEEYKESVRQVIDFLNGNYSEILNKLKDKMMEASDKMEYEDAAQYRDLITSVKQI 239 Query: 240 TEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 +KQ ++++ +D DVI A A V V FIR GK+LG + V E+V+ Sbjct: 240 AQKQKITDSDFEDRDVIACAIQGDDAVVQVFFIRGGKLLGREHFHMNVAASDSRMEIVQE 299 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ Q+Y +PG I++ LS+K ++++ L+ G K+++ +G R + ++LA Sbjct: 300 FMKQYY---GGTPYIPGIIMVQDELSEKDIISEWLTSRRGLKVSILVPKKGTREKMVELA 356 Query: 359 RTNAATALTS-----KLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 NA L K Q+ TV + +A L L +KR+E +DIS+T G ++V S V Sbjct: 357 FKNAQMVLDKDNERIKNEQKKTVGA-MQEIADWLDLGTIKRVEAYDISNTNGIESVGSMV 415 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-------------- 459 VF+ P +YR++ I + DDY +M +VL RR+ + +++ +I Sbjct: 416 VFEDGRPKNNDYRKFRIKTVKGPDDYKSMREVLTRRFTRGMEERRILVEQEHKDRLLAEQ 475 Query: 460 ------------------------PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLG 495 PD+I++DGG+GQ+ A +V EL + P+ Sbjct: 476 EIVIDEAAGGETKEKIHLAGFNVYPDLIMMDGGRGQVNIALDVLNELGLDI----PVCGM 531 Query: 496 VAKGADRKAGLETLFFEPEGEGFSLPPD--SPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 V R G L++ +P D S +I ++DE+H AI HR R+K + Sbjct: 532 VKDDNHRTRG---LYY----NNVEIPIDRHSEGFKLITRVQDEAHRFAIEYHRSLRSKAQ 584 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 +S L+ IEGVGP RR+ L+K+ + +RNA VEE+ + GI++ +A I+ Sbjct: 585 VSSVLDDIEGVGPARRKALMKHFLDINVIRNADVEELMQADGITRQVAGNIY 636 >UniRef50_Q180Q8 UvrABC system protein C n=8 Tax=Clostridiales RepID=UVRC_CLOD6 Length = 605 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/613 (34%), Positives = 347/613 (56%), Gaps = 29/613 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQI 63 FD + LK + S+PGVY M D +IYVGKA LK R+ YF+S+ + K +++V I Sbjct: 2 FDIQEHLKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFI-FLSGDTHPRLAMHRGAK 122 + + +T +E EAL+LE N IK Y+P+YNV+LRDDK+YP+I + + +PR+ R Sbjct: 62 YKFEYIITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVL 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCE---NSVYRNRSRPCLQYQIGRCLGPCV 179 K +YFGP+ N AV +TL L+ +PIR C+ + +N++RPCL I +CLGPC Sbjct: 122 KDKAKYFGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCT 181 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G VS+EEY + +E + + LSGK+++++ L +M +S N FEEAA RD+I+++ + Sbjct: 182 -GNVSKEEYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEM 240 Query: 240 TEKQFVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 +KQ + T DL DV+ +A ACV V FIR GK++G + + + + ++ Sbjct: 241 IQKQKIDATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILS 300 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 +FV QFY ++ +P E++++ + D ++L + LS G+K+ ++ +G++ +++ Sbjct: 301 SFVKQFY---NEQEYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEM 357 Query: 358 ARTNAATALTSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASC 412 R NA L +++ L L +L L ++ R+E +DIS+ G ++ S Sbjct: 358 VRKNAVEYLEKFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSM 417 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 VV+ + EYRRY I + +DY +M +++ RR + +PD+IL+DGGKGQ+ Sbjct: 418 VVYTNAKKDKKEYRRYKIKTVIGPNDYDSMAEIVDRR----LKHGNLPDLILLDGGKGQV 473 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + K V DV PL R GL + E E E L + I Sbjct: 474 SAVKKVLELNDVDI----PLWGMYKDDKHRTKGL--ICKEKEIE---LDKTTNLYRFIAS 524 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 I++E H++AI HR R K S L+ I+G+G KR++ LL + + ++ A++EE+ + Sbjct: 525 IQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVDAIKKATMEELLE 584 Query: 593 VPGISQGLAEKIF 605 V G+++ +A+ ++ Sbjct: 585 VDGMNKSIADNVY 597 >UniRef50_Q2NGT2 UvrABC system protein C n=4 Tax=Methanobacteriaceae RepID=UVRC_METST Length = 598 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 227/610 (37%), Positives = 330/610 (54%), Gaps = 39/610 (6%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS--NLASRKTEALVAQIQQIDVTVT 71 V +PGVY M++ VIYVGKAK LK RL SYFR L KT+ L+ + +T Sbjct: 9 VPQKPGVYIMHNKEDEVIYVGKAKKLKSRLQSYFRDEDKLDRPKTQFLMRHFSYFEYILT 68 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGP 131 +TE EAL+LE N IK Y+P YN+ L+D K YP+I ++ + PR+ + R + K Y+GP Sbjct: 69 NTEKEALILEANLIKKYRPHYNISLKDGKQYPYIKITNEDFPRIYITRNIVNDKASYYGP 128 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 + + R + L K F IR C ++ PCL YQI +C PCV +S+EEY + Sbjct: 129 YTDSTHARAFIDFLNKNFQIRTC-----KHMDGPCLNYQIKQCSAPCV-NYISQEEYNRN 182 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD- 250 + V+L L GK + +L M ++N+EFE+AA +RDQI ++ EKQ + D Sbjct: 183 IRRVKLLLQGKYKTTIKKLKKDMNRYAKNMEFEKAAMLRDQIDTIKITLEKQNIQPNQDV 242 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 + D+IG + A V +L +R GK K G ++ F+ Q+Y Sbjct: 243 NQDIIGFDHNNEEAAVVILSVRSGKTNKKDDLVLKGIKGFSDKQIRTEFIKQYYSTAP-- 300 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 LP EI+L+ ++ DK ++ + L E A KI + G +K+A+ NA +LT Sbjct: 301 --LPDEIILEDDIEDKDVIVEWLEEKANHKIKITVATDGHYITLIKIAKKNAHISLTENT 358 Query: 371 SQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 ++ L L L LP + +E FDIS+ G VAS VVF+ P + YR++ Sbjct: 359 KEEEN---PLLTLEKYLNLPRLPYHIEAFDISNISGIYAVASMVVFENGKPAKKMYRKFK 415 Query: 430 ITGITPG-DDYAAMNQVLRRRY--------GKAIDDSKI-PDVILIDGGKGQLAQAKNVF 479 + TPG +D+A M +V+ RRY D I PD++LIDGGKGQL A +VF Sbjct: 416 MN--TPGPNDFAMMKEVITRRYSHISPNNTNNTSDSLSIHPDLVLIDGGKGQLGMAVDVF 473 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 +L+++ + PL G+AK E ++ + LP S ALH++Q++RDESH Sbjct: 474 KKLNIT---DVPLA-GLAKK------FEEVYLPGQTNPIILPRQSSALHLLQYVRDESHR 523 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HRK R+K S L+ I GVG KR+Q LL + L + NAS +EI +V GI+Q Sbjct: 524 FAITFHRKLRSKAFTKSILDDIPGVGKKRKQALLTHFESLDNIYNASFDEICQVKGINQK 583 Query: 600 LAEKIFWSLK 609 LA+ I+ +LK Sbjct: 584 LAKTIYETLK 593 >UniRef50_Q1AUH1 UvrABC system protein C n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=UVRC_RUBXD Length = 611 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/611 (37%), Positives = 338/611 (55%), Gaps = 29/611 (4%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVTVTH 72 + + PGVY D G V+YVGKA++++ R++SYF RS K L +++QID Sbjct: 12 LPASPGVYIFRDGEGRVLYVGKARNIRSRVASYFTRSGDGRPKIAELRERVRQIDFIAAR 71 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGP 131 ETEAL+LE N IK ++PR+N LRDDKSYP+I ++ GD +PR+ RG + YFGP Sbjct: 72 GETEALVLEANLIKRHRPRFNASLRDDKSYPYIVVTTGDEYPRVFATRGPHDPRHRYFGP 131 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-PCLQYQIGRCLGPCVEGLVSEEEYAQ 190 FP+ +V TL +L K F R+C RS PCL Y IGR PC+ G VS+EEY Sbjct: 132 FPSAGSVHATLDVLNKTFRFRKCRGPEPGRRSGIPCLNYHIGRSAAPCI-GAVSKEEYGA 190 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 + V FL G+ D ++ + +M A+ ++FE AAR+RD+ A+R V ++Q + + Sbjct: 191 IIADVIAFLEGRVDGLIREREEQMRRAAAEMDFERAARLRDEAAALRHVRDRQQATIASE 250 Query: 251 D-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 D D +G + ACV + +R+G+++G S+ G + V +FV Q+Y + Sbjct: 251 DSFDAVGAYAEGEEACVQIFAVREGRIVGRDSFLLDNYGEQDAESVALSFVPQYY----E 306 Query: 310 MRTLPGEILLDFNLSDKTL--LADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 +P E+L+ + ++ L +A+ LS L G ++ V+ RGD+ R L+LA NA L Sbjct: 307 TAAVPREVLVS-SPDEEALAPIAEHLSRLRGTRVEVRRPQRGDKRRVLELALHNARMGLE 365 Query: 368 SKLSQQSTVHQRLTA----LASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLR 422 + + RL++ L L LP + R+EC+DIS+TMG +VAS VVF P + Sbjct: 366 HERAMSEARRSRLSSTLDRLREELALPRLPMRIECYDISNTMGTNSVASMVVFQGGRPAK 425 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGK--AIDD--SKIPDVILIDGGKGQLAQAKNV 478 +YRR+ I + DD A+M +V+RRR + A D+ S PD+IL+DGGKGQL+ V Sbjct: 426 DQYRRFRIKTVEGADDPASMAEVVRRRLERLLAGDEKFSPAPDLILLDGGKGQLSAVAEV 485 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEG-FSLPPDSPALHVIQHIRDES 537 L + +AK E FEP G L PDS L ++Q +RDE+ Sbjct: 486 LEGLGSGGRLPDIPVRALAK-------REEEVFEPGRPGPVVLAPDSAELRLLQRVRDEA 538 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H A HRK R + S L+ + GVGP R++ +L++ G Q AS+EE+ VPG+ Sbjct: 539 HRFANAYHRKLRGRAMTASVLDDLPGVGPVRKRRILEHFGTPQAFLEASLEELEAVPGLP 598 Query: 598 QGLAEKIFWSL 608 +A +I L Sbjct: 599 GRVAREIHARL 609 >UniRef50_UPI0001C41B0D excinuclease ABC C subunit UvrC n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B0D Length = 615 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/617 (34%), Positives = 351/617 (56%), Gaps = 53/617 (8%) Query: 17 QPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETE 76 +PG+Y M D +IYVGK+K L+ R+ SYF+ NL S KT+ L++ ++ VT+TE E Sbjct: 14 KPGIYIMKDINEEIIYVGKSKSLRNRVKSYFQKNLDSPKTKVLMSHFNSLEYIVTNTEKE 73 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGY 136 AL+LE N IK ++PRYN+ L+DDK YP++ ++ + P++ + R G Y+GPF + Sbjct: 74 ALILEANLIKKHRPRYNIRLKDDKRYPYVKITDEDFPKIVITRTISKT-GTYYGPFTDVT 132 Query: 137 AVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVR 196 AVR+T+ L+++F IR C + PCL QI C PC +G +S+EEY + ++ + Sbjct: 133 AVRQTVKFLKQLFRIRTC-----KRMDGPCLNSQIDLCYAPC-DGQISKEEYKEHIKKID 186 Query: 197 LFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-DLDVI 255 LF GK ++++ L M+ A++ E+E+AA IRDQI ++ V +KQFV D D D+I Sbjct: 187 LFFQGKYNKIIKDLEIEMKQAAERQEYEKAAVIRDQISSIDEVMKKQFVEFENDLDQDII 246 Query: 256 GVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPG 315 +A+ A V+ IR GK++G + T EV+ F+ Q+Y R +P Sbjct: 247 AIAYTIHNAVAVVMNIRNGKIMGKDDFTMDGSENTTSDEVISAFIKQYY---GINRHIPK 303 Query: 316 EILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQST 375 E+LL+ ++ DK L+ + LS+L G K++++ +G++ R +++A NA + +++ Sbjct: 304 EVLLEEDIPDKELIEEWLSDLRGNKVSLKVPQKGNKLRLVRMAGKNAEIIKNQRQKMENS 363 Query: 376 VHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP 435 + + L ++ KLP V +E +DIS+ G+ V S V F P + +Y+++ + TP Sbjct: 364 MME-LKRYLNLKKLPRV--IEGYDISNISGKLAVGSKVSFLDGKPNKKQYKKFKMN--TP 418 Query: 436 G-DDYAAMNQVLRRR-------YGKA----------------IDDSKI---PDVILIDGG 468 G +D+A M ++L RR Y K I+ K+ P++I+IDGG Sbjct: 419 GPNDFAMMKELLERRLKPLKEHYEKVRINEEHTKHNEAETEKIEPLKLGEEPNLIVIDGG 478 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL A +V E +++ H ++G+AK E ++ +P D+ ALH Sbjct: 479 KGQLGMAVDVLKEYNLT----HIPIIGLAKE------FEEIYIPNSSFPIIIPQDNEALH 528 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 ++Q +RDESH A+ HRK R+K S L+ IEG+G KR+ LL++ G ++ ASVE Sbjct: 529 LLQQVRDESHRFAVTYHRKLRSKKIEESPLDEIEGIGKKRKLELLRHFGDFDSIKKASVE 588 Query: 589 EIAKVPGISQGLAEKIF 605 E+ V G+++ +A ++ Sbjct: 589 ELKGVDGMNEKVALNVY 605 >UniRef50_A6BHR5 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BHR5_9FIRM Length = 617 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 214/624 (34%), Positives = 364/624 (58%), Gaps = 36/624 (5%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVA 61 + F+ + LK + +PGVY M+D +IYVGKA LK R+ YF+S+ K E +V Sbjct: 2 ENFNIQEELKKLPGKPGVYLMHDEKDAIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVT 61 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 I + + VT +E EAL+LE N IK ++P+YN +L DDK+YPFI ++ + PR+ M R Sbjct: 62 HISRFEYIVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTVNEPFPRVMMARR 121 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPC 178 K K +YFGP+ + AV++T+ L++K++ IR C S+ ++ + RPCL Y I +C PC Sbjct: 122 MKKDKAKYFGPYTSTGAVKDTIELIRKLYHIRSCNRSLPKDIGKERPCLNYHIHQCYAPC 181 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 +G +S EEY + ++ V FL+G D +L +L +M AS+NLEFE+A R+ + +V++ Sbjct: 182 -QGYISREEYRKSIDEVVRFLNGNYDPILKELEEKMLDASENLEFEKAIEYRELLASVQK 240 Query: 239 VTEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + +KQ +++T GDD D+I +A + A V V FIR G+++G ++ K+ SE++ Sbjct: 241 IAQKQKITDTAGDDRDIIAMASEGEDAVVQVFFIRGGRLIGRDHFYLKIAENDTKSEILS 300 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 +F+ QFY + +P E++L + D+ ++ + L+ K+ ++ +G + + ++L Sbjct: 301 SFIKQFY---AGTPYIPAELMLPEEIEDQEIIEEWLTTRREHKVRLRIPKKGTKEKLVEL 357 Query: 358 ARTNAATALTSKLSQQSTVHQR----LTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 A+ NA L + + R + L +L L + RME +DIS+T G +V S V Sbjct: 358 AQKNAQMVLKNDKERLKREEGRTIGAVKELEKILGLTGIIRMEAYDISNTNGFDSVGSMV 417 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI----DDSK------IPDVI 463 V++ P R +YR++ I + DDYA+MN+VL RR+ + D+S+ PD+I Sbjct: 418 VYEHGKPKRNDYRKFKIKSVQGPDDYASMNEVLTRRFEHGLRERQDESETGGFQAFPDLI 477 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 ++DGG+GQ+ A V +L+ H + G+ K + + L+F LP D Sbjct: 478 MMDGGRGQVNIALEVLEKLN-----QHIPVCGMVKDDNHRT--RGLYF----NNVELPID 526 Query: 524 --SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 S +I I+DE+H AI HR+ R+K + S L+ I GVGP RR+ L++ ++ Sbjct: 527 RNSECFRLITRIQDEAHRFAITFHRQLRSKGQVHSILDDIPGVGPARRKDLMRSFENIEA 586 Query: 582 LRNASVEEIAKVPGISQGLAEKIF 605 +RNA+V+++ ++P +++ A++++ Sbjct: 587 IRNATVDDLKELPSMNEKSAQEVY 610 >UniRef50_Q12W02 UvrABC system protein C n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=UVRC_METBU Length = 604 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 223/607 (36%), Positives = 334/607 (55%), Gaps = 32/607 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 + + PGVY M D +IY+GKAK LKKR+S YF+S+ S KT A+V +I +D Sbjct: 5 ISNIPELPGVYLMKDISDNIIYIGKAKSLKKRVSQYFQSSKNHSSKTRAMVRKIADVDYI 64 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRGAKHAKGEY 128 VT +E AL+LE N +K +P YN+ L+DDK YP++ ++ +T P++ + R Y Sbjct: 65 VTESEVAALILEANLVKKNRPHYNIDLKDDKRYPYVKVTVNTKFPKIFITRRRLMDGALY 124 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGP+ N VR+TL ++ +IF I++C V R CL Y I RC PC G ++ EEY Sbjct: 125 FGPYTNVKPVRQTLDMISQIFRIKRCNRRVDGKGKRACLNYHIDRCYAPC-NGSITPEEY 183 Query: 189 AQQV-EYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 V E V+LF G+ + +L +M + E+E AA IRDQI A++ ++ +Q + Sbjct: 184 RNNVMEAVKLF-KGETSGTIKELQEKMNIHAIAQEYESAAVIRDQIDALKSLSRQQTATA 242 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT-ELSEVVETFVGQFYLQ 306 DD D+I A D V + +IR G ++G T ++ V E F+ Q+Y Sbjct: 243 GNDDSDIIATASDDETVFVQIFYIRDGNMVGKADMSLSWGDATGNIARVTEEFIKQYY-- 300 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 Q +P EIL+ + + +K L+ LSE A R + +Q RG++ R +++A NA L Sbjct: 301 --QDAPVPPEILVQYPIPEKELVIKWLSEKAARSVQIQVPQRGNKKRLMEMAEQNAQMTL 358 Query: 367 TSKLSQQSTVHQRLTALA------SVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGP 420 +QS Q L AL ++ LP +E FDIS+ G V S VVF+ P Sbjct: 359 EQSHLKQSDKEQALQALLQLRDALALSTLP--AHIEGFDISNISGTDAVGSMVVFENGLP 416 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYG-KAIDDSKIPDVILIDGGKGQLAQAKNVF 479 ++YR +NI + DD+A M +V++RRY + + K+PD+ILIDGG GQ++ A Sbjct: 417 ANSKYRHFNIKTVKGIDDFAMMAEVVKRRYTHQKAEKDKLPDLILIDGGPGQVSAAMGSL 476 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG--EGFSLPPDSPALHVIQHIRDES 537 EL + L+G+AK E + +G E LP S AL V+ +RDES Sbjct: 477 KELQLDIP-----LVGLAKR------FEHIIVPKDGTDEVVILPHTSEALKVLMRVRDES 525 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H A+ HR++R + S L+TI G+G R++ LL + ++ +R+ASVEE+ V GIS Sbjct: 526 HRFAVSSHRRRRTARLSHSELDTIPGIGASRKKALLNHFSSIEQIRHASVEELTAVEGIS 585 Query: 598 QGLAEKI 604 +GLAE+I Sbjct: 586 KGLAERI 592 >UniRef50_C9LR57 Excinuclease ABC subunit C n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR57_9FIRM Length = 625 Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 221/609 (36%), Positives = 344/609 (56%), Gaps = 31/609 (5%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQI 66 +A + + PGVYR D G VIYVGKA +LK R+ SY R + S K A++ + Sbjct: 9 RAKVDALPDSPGVYRWKDKDGRVIYVGKAVNLKNRVRSYLREDKNRSPKVAAMIRHAADL 68 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D+T+T TE EAL+LE N IK P+YN+ LRDDKSYP++ ++ + PR+ + R + Sbjct: 69 DITMTATEMEALILECNLIKELHPKYNISLRDDKSYPYVKITVNEKWPRILVTRNIRRDD 128 Query: 126 G-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G +YFGPF + ++R+TL+L+++++PIR C + SRPCLQY + C PC + Sbjct: 129 GAKYFGPFTDVGSLRKTLSLIRRLYPIRTCRSM---KVSRPCLQYHMNLCCAPCWNH-CT 184 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 EE+Y + V GK+ +++ L ME+AS+ + FE AA +RDQ+ AV+ V ++Q Sbjct: 185 EEQYHEYVVKTCDLFEGKNTELVKALQKDMESASEEMNFERAAVLRDQLHAVQSVQQRQN 244 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY-FPKVPGGTELSEVVETFVGQF 303 + + D DV+G++ A + + +IR GK++G + P T+ +++ F+ F Sbjct: 245 IVSKEGDFDVVGMSRLDEHAGLEIFYIRYGKMVGKENLSIPDSLHETD-EDIIAAFIKNF 303 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y G+ ++P EI+L + LL LS+L + + RG + R +A++NAA Sbjct: 304 Y--GANPSSVPKEIILPILPQESLLLTAWLSKLRNGDVKIYVPERGFKRRLKDMAQSNAA 361 Query: 364 TALTSKLSQQSTVHQR----LTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDAN 418 L K Q R + L +L LP++ +R+ECFDISH G +T S VVF++ Sbjct: 362 KYLADKKLQWEYQDAREQGAVNKLKELLHLPKLPERIECFDISHNQGAETTGSMVVFESG 421 Query: 419 GPLRAEYRRYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAK 476 P + EYRR+ + T TP DD+ +M +V+ RRYG + PD+I++DGGKGQL A Sbjct: 422 RPNKKEYRRFKLQSTQGTP-DDFKSMAEVMARRYGIETKWPR-PDLIVLDGGKGQLDAAL 479 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 V + + P++ G+AK +E ++ E + + + P PAL ++Q IRDE Sbjct: 480 PVIRSCGI----DTPVI-GLAKR------MEEIYVEGQTDPIIIDPHEPALQLLQFIRDE 528 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H I HRK K S L+ I G+GP+RR L L +RNA+VEE+ +V G+ Sbjct: 529 AHRFVITYHRKWTTKRNTESILDHIAGIGPQRRNALWHAFRSLDEMRNATVEELTRVKGM 588 Query: 597 SQGLAEKIF 605 ++ AE +F Sbjct: 589 NKTAAENVF 597 >UniRef50_B2A711 Excinuclease ABC, C subunit n=2 Tax=Firmicutes RepID=B2A711_NATTJ Length = 685 Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 232/668 (34%), Positives = 363/668 (54%), Gaps = 81/668 (12%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D + L + +PGVY M G VIYVGKA +LK R+ SYF S + K + + +I Sbjct: 5 DLQEKLANLPEKPGVYLMKSKQGRVIYVGKAINLKNRVRSYFNSGNKAVKVQVMTPKISD 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAM-HRGAKH 123 I+ VT +E EAL+LE+N IK Y+P+YNV LRDDK+YP++ ++ + +PRL + R KH Sbjct: 65 IETIVTDSELEALILENNLIKKYRPKYNVSLRDDKNYPYLKITTEEDYPRLIIARRMGKH 124 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGL 182 G YFGP+PN AVRET+ LL+K+FP+R C+ +N+ RPCL Y I RCL PC E Sbjct: 125 --GRYFGPYPNAGAVRETIKLLRKLFPVRTCKGETPKNQGKRPCLNYFINRCLAPCNEK- 181 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 VS +EY + ++ + L GK++++L +L +M A++ +EFE+AA R+Q A+ ++ +K Sbjct: 182 VSRDEYREMIQDIISVLEGKEEELLNELERKMNLAAEEMEFEKAAEYRNQKAALEKIRQK 241 Query: 243 Q-FVSNTGDDLDVIGVAFDAGM------------ACVHVLFIRQGKVLGSRSYFPKVPGG 289 Q VS +D D+I + F+ + ACV + +IR GK++G R+ F G Sbjct: 242 QKIVSERREDYDIIALGFEEKIDDTSDTDDSTEEACVQIFYIRGGKLMG-RNNFRVSTGA 300 Query: 290 TELSE-VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPR 348 E +E ++ +F+ Q+Y Q +P +IL+ L++K L+ L+E K+ V+ R Sbjct: 301 LEGAEDMLTSFIKQYYAQALH---VPKQILVSHPLTEKELIESWLAEKREGKVEVKVPQR 357 Query: 349 GDRARYLKLARTNAATALTSK----LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT 403 G++ + + +A NA L + ++ L LA L L E+ R+E +DISHT Sbjct: 358 GEKYQLMNMAIKNAELELKQQELESEKERKMTEGALKELALKLSLSEIPFRVEGYDISHT 417 Query: 404 MGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----- 458 GE+TVAS VVF+ + +YR++ I DD+ AM +VLRRR+ +A + + Sbjct: 418 QGEETVASMVVFEGGKSKKKDYRKFRIRTTAGPDDFKAMEEVLRRRFHRAKKEEQEYLMA 477 Query: 459 -------------------------------------IPDVILIDGGKGQLAQAKNVFAE 481 +PD+I+IDGGKGQL+ A V E Sbjct: 478 AETKQDSEYDAREGNKDNISQYNSGTEYSEYDFKFAVLPDLIVIDGGKGQLSSAVKVMEE 537 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 + S + V A R+ E +F P +S AL ++Q IRDE+H A Sbjct: 538 VGYSQ-------IPVISLAKRE---EEIFVPERSTSLKFPSNSEALKLLQRIRDEAHRFA 587 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 + HRK R K TS L+ + +G +R++ L ++ L ++ AS++E+A +P +++ A Sbjct: 588 VSYHRKSRGKATLTSLLDEVPEIGSRRKKELFEHYSSLNEIKQASIDELANLPSMNKKAA 647 Query: 602 EKIFWSLK 609 + + LK Sbjct: 648 KNLVTYLK 655 >UniRef50_C7LTD0 Excinuclease ABC, C subunit n=2 Tax=Desulfovibrionales RepID=C7LTD0_DESBD Length = 605 Score = 364 bits (935), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 229/600 (38%), Positives = 338/600 (56%), Gaps = 26/600 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQ 65 ++ L + + PGVY M +A G +IYVGKAK L++RL+SYF+ + + K ++ +++ Sbjct: 3 SRKILPSFPTCPGVYLMKNATGRIIYVGKAKHLRRRLASYFQPEHRLAPKVRVMMTRVET 62 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHA 124 ID T TE EALLLE + IK ++P+YN++LRDDK Y LS + P L + R Sbjct: 63 IDFLCTSTEKEALLLEASLIKKHRPKYNIVLRDDKQYVLFCLSRNHPFPALRLTRKVLRD 122 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 YFGPF + + RET ++ ++FP+R+C ++V+ NR+RPCLQY IGRCLGPC VS Sbjct: 123 GSVYFGPFTSALSARETKRVIDRLFPLRKCRDTVFSNRTRPCLQYHIGRCLGPCCLP-VS 181 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ- 243 EEEY Q V V LFLSGK D+++ L +M S L+FE AAR+RD I+A+R E+Q Sbjct: 182 EEEYRQVVRRVELFLSGKSDELMAGLHDQMMRLSDALDFEGAARLRDSIRALRETVERQA 241 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVL-GSRSYFPKVPGGTELSE--VVETFV 300 V + G DLDVIGV A + ++F+RQG+++ G +F T +E + ++F+ Sbjct: 242 AVLSDGRDLDVIGVHGHENGAALAIVFVRQGRIIDGQAFWFADAAVDTPEAEAGLTDSFL 301 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y + R +P I+ F D L D+L+++ G + +V K RGD+ R +L Sbjct: 302 MQYY---NAERFIPARIITAFGSQDPA-LEDALADMRGGRASV-AKARGDQER--RLVDI 354 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANG 419 A A L Q+ T+ R LA VL + EV+R+EC D SH GE VVF Sbjct: 355 ATANAKAHALRQRRTIPTR-AELAGVLGVEGEVERIECVDASHIQGEGMRVGMVVFVDGR 413 Query: 420 PLRAEYRRYNITGIT-PGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 ++ YR Y+ + DDY A+ RR A PD++LIDGGKGQL + Sbjct: 414 EEKSAYRVYSFPELEGTADDYLALASFAARR---AKSGPPWPDLLLIDGGKGQLGAVERA 470 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAG-LETLFFEP-EGEGFSLPPDSPALHVIQHIRDE 536 AE +S L +AKG R+AG L + F P +L P SP L +QH+RD Sbjct: 471 MAENGLSAVP----LASIAKGVSRRAGELGDVIFRPGRKNPLNLRPGSPELLFLQHVRDT 526 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H I R+ + + +S L+ + G+GPK ++L + +Q + A +E++A +PG Sbjct: 527 AHRFVISRLRRHKRAAQLSSDLDNLPGIGPKTARLLWDHFDSVQAMTQARIEDLAALPGF 586 >UniRef50_Q1IZB2 UvrABC system protein C n=4 Tax=Deinococcus RepID=UVRC_DEIGD Length = 616 Score = 364 bits (934), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 226/610 (37%), Positives = 341/610 (55%), Gaps = 29/610 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + + PGVY ++ GGT IY+GKA +L+ R++ +F++ S K AL +D Sbjct: 6 LPVLPASPGVY-IFRRGGTPIYIGKAVNLRSRVAQHFKAGGKSGKFTALA---DSLDFIT 61 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T E EAL+LE N IK ++P YNVLL+DDK YPF+ L+ + P L + R Y+G Sbjct: 62 TRNEVEALILEANLIKQHRPHYNVLLKDDKHYPFLKLTNEAFPMLVVTRRVLKDGASYYG 121 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+P+ AVR L+ +FP+R+ + + RPCL Y +GRCLGPCV+ + YAQ Sbjct: 122 PYPDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCVDA-ADPQAYAQ 180 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV--TEKQFVSNT 248 VE V+ L G+ V+ +L + M+ A++ +FE+AAR+RD++QAV ++ TE+ + Sbjct: 181 VVEDVKALLEGRAAPVIARLKADMQAAARAQDFEQAARLRDRVQAVEKLFGTEQHAYVSE 240 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLG-SRSYFPKVPGGTELSEVVETFVGQFYLQG 307 DLD +GVA A V + +R G+V+G + + GG ++ EV+ FV +Y Q Sbjct: 241 ETDLDFLGVAQAGEYAMVQLFRLRGGRVVGRDKRFLVGAEGGADVGEVLGAFVQDYYTQA 300 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P ILL D + + LSE AGR++ ++T RGD+A +++A+ NAA L Sbjct: 301 TH---VPPLILLPAEFEDAPVWSAFLSERAGRRVEMRTPKRGDKAELVEMAQRNAAAGLE 357 Query: 368 SKLS--QQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAE 424 S+L+ ++ H L AL VL LP+ R+E +D S+ G V+ VVF+ R+E Sbjct: 358 SELALLERRGDHPGLDALREVLALPDRPWRIEGYDNSNLFGSNIVSGMVVFEGGRARRSE 417 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRY-GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 +RR+ + G+ DDYAAM+Q + RR G D +PD+ILIDGG+GQ+ A + D Sbjct: 418 HRRFKVRGLDHPDDYAAMHQTITRRLTGSLADKLPLPDLILIDGGRGQVHAALDALRAAD 477 Query: 484 VSWDKNHPLLLGVAKGADR---------KAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 V L+G+AK +R + LET G LP PAL V+ +R Sbjct: 478 VRVP-----LVGLAKREERIILPGRFGAQWWLETGTEVGVGGELLLPHTHPALRVLIGVR 532 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE H +A+ HR R + S + + G+G KRR LL++ L+ L A VE IA VP Sbjct: 533 DEVHHYAVSYHRTLRGEQMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAAPVERIAAVP 592 Query: 595 GISQGLAEKI 604 G++ A+ + Sbjct: 593 GMNLRAAQSV 602 >UniRef50_Q6MKS2 UvrABC system protein C n=1 Tax=Bdellovibrio bacteriovorus RepID=UVRC_BDEBA Length = 630 Score = 363 bits (933), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 226/617 (36%), Positives = 347/617 (56%), Gaps = 30/617 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDVT 69 +K +Q GVY M + +IY+GKAK+L+ R+ SYF S S KT LV+ I +++ Sbjct: 13 VKEFPTQSGVYLMKNTADKIIYIGKAKNLRNRVRSYFNDSKDHSPKTRLLVSNICEVEYI 72 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFI-FLSGDTHPRLAMHRGAKHAKGEY 128 +T TE EA LLE + IK ++P+YN+ LRDDK+YP+I F GD PRL + R K Y Sbjct: 73 LTKTEVEAFLLEASLIKKHRPKYNIRLRDDKAYPYIRFSWGDQAPRLYLARKVKKDGSLY 132 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGP+ +G AV T+ L + F IR C ++V+++R+RPC+ YQIGRC PCV+ ++ E+Y Sbjct: 133 FGPYTSGLAVHGTIKFLNRTFKIRDCTDAVFKSRTRPCMTYQIGRCTAPCVK-YITMEDY 191 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN- 247 +VE +LFL G++ +V+ + +M A+ +FE AAR+RD I+A++ + +KQ V N Sbjct: 192 RNEVEGAKLFLKGQNKKVIKSMTEKMMGAADEEKFEVAARLRDSIEAIKAILQKQAVIND 251 Query: 248 -TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSR-SYFPKVPGGTELSEVVETFVGQFYL 305 + D D +G D + + IR G+V+G+R Y P + + E V F Sbjct: 252 TSEKDQDALGYYGDERGCLIETVHIRAGRVIGTRPHYLPHFDPNDAVEDPREWLV-DFLN 310 Query: 306 QGSQMRTLPGEILLDFNLSDK--TLLADSLSELAGRKINVQ--TKPRGDRARYLKLARTN 361 Q + +P E+LL ++ + L+ + L E +G K V+ T RG + +A N Sbjct: 311 QYYEDNFIPDEVLLPLDIGNDLTKLMEEVLKERSGSKTTVRFATDERG--RNLVDMAHEN 368 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGP 420 A + +S+ + L + LPE +R+EC+DIS G +TVAS VVF+ P Sbjct: 369 AKSHFLKYVSKSEEKLRGLEEIKERFNLPERPRRIECYDISTFQGAETVASQVVFEDGVP 428 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + YRRY I + +D+A+M +VL RR+ D P +I+IDGGKGQL+QA + Sbjct: 429 AKEHYRRYKIKTVQGINDFASMYEVLSRRFKHTEYDD--PQLIVIDGGKGQLSQAMKILE 486 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP---------PDSPALHVIQ 531 E+ K+ P ++G+AK A ++ + E E F LP ++ AL+++ Sbjct: 487 EI---GRKDIP-VVGLAK-ARTESDFQKQEVESTEERFFLPGRSNPVIFKHNAEALYILS 541 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H AI HRK R S L+ + G+G KR+++LL + ++ A EEIA Sbjct: 542 GIRDEAHRFAITYHRKLREGTSLESELDYVVGLGEKRKKVLLTQFNSIDEIKMADPEEIA 601 Query: 592 KVPGISQGLAEKIFWSL 608 K+ G ++ LAE+I L Sbjct: 602 KLKGFNRVLAERILLQL 618 >UniRef50_C8X3R4 Excinuclease ABC, C subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R4_DESRD Length = 636 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 234/612 (38%), Positives = 326/612 (53%), Gaps = 36/612 (5%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVTHTETE 76 PG Y M D G VIYVGKAK L+KRL+SYF+ + RKT ++ ++ I+ T TE E Sbjct: 13 PGTYLMKDERGRVIYVGKAKVLRKRLASYFQEPDRLPRKTRVMMDKVWSIETLCTETEKE 72 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHP--RLAMHRGAKHAKGEYFGPFPN 134 A LLE++ IK ++PRYN++LRDDKSY +F HP RL+M R YFGPF + Sbjct: 73 AFLLENSLIKKHRPRYNIILRDDKSY-VLFKLDKRHPFPRLSMTRRVVQDGSTYFGPFTS 131 Query: 135 GYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEY 194 A RET LL ++FP+R+C+ + + NR RPCLQY IGRCLGPCV + +EY + V Sbjct: 132 AVAARETWKLLNRLFPLRKCKQTTFNNRVRPCLQYNIGRCLGPCVYD-IPRQEYQEVVRQ 190 Query: 195 VRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF-VSNTGDDLD 253 V LFL+G+ ++L +L + M+ AS++L FE+AAR+RDQIQAV + E+Q V G D D Sbjct: 191 VELFLTGRSKELLRRLRADMQAASEDLRFEDAARLRDQIQAVEQTVEQQVAVLPGGKDRD 250 Query: 254 VIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT------------------ELSEV 295 V+G+ G + +LF+RQG++L +S+F GT E EV Sbjct: 251 VLGLGRTVGGVALGLLFVRQGQLLDQKSFFWAEEDGTDELGLQEETASAQSTAVEEAQEV 310 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + +FV QFY G R +P I+L F + D +L D LSE G + + T + + Sbjct: 311 LRSFVLQFYSPG---RYIPERIVLPFAMED-AVLEDILSERRGGPVRLATAHGPQERKLV 366 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 LA TNA A +RL + +LPE R+E D SH G+ V VVF Sbjct: 367 SLAETNAVQAGDRARKTVEPPLERLQDRLGLSQLPE--RIEAVDASHFGGQGMVVGQVVF 424 Query: 416 DANGPLRAEYRRYNITGIT-PGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL-A 473 + P + YR Y + DDYAA+ RRR PD+I++DGGKGQL A Sbjct: 425 ENGRPHKEAYRIYAFPELEGAADDYAALQGWARRRLRSG---PPWPDLIVVDGGKGQLQA 481 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP-EGEGFSLPPDSPALHVIQH 532 K + + + L +AKG R LE F P +L P S L ++QH Sbjct: 482 VQKGLNEGQEAGLAADSFALAALAKGERRGGELEERVFRPGRKNPVALRPGSAELLLLQH 541 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRD H + R+ R S LE + GVGP+ +L + G L+ + A+ E+ Sbjct: 542 IRDSVHRFVLSRQRRTRRAKGLDSRLEELPGVGPRTAHLLWNHFGTLERMCQATEAELEA 601 Query: 593 VPGISQGLAEKI 604 +PGI A ++ Sbjct: 602 LPGIGAAKAAQL 613 >UniRef50_C7HUD8 UvrABC system, C protein n=2 Tax=Anaerococcus RepID=C7HUD8_9FIRM Length = 615 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 212/627 (33%), Positives = 341/627 (54%), Gaps = 33/627 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEAL 59 M++Q K LK + PGVY M ++ +IYVGKA +LKKR+S YF +N RK ++ Sbjct: 1 MNNQIKEK--LKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNKNKGRKVLSM 58 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V+ I + + E EAL+LE N IK +P+YN++LRDDK YP+I ++ + PR+ R Sbjct: 59 VSHINHFEYIIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKITNEKFPRIQKVR 118 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGP 177 K KG Y+GP+P+ YAV + + L ++PIR C + + + RPCL Y I RC P Sbjct: 119 NVKKDKGYYYGPYPDAYAVNDVIELFHILYPIRTCNLNFDKGQQLDRPCLNYYIDRCKAP 178 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 CV G E+EY + + ++ FL K D + +I++M AS+ L+FE AA+ RD +A+ Sbjct: 179 CV-GKGDEKEYMENITKIKNFLENKSDYIPNLVINKMNKASEILDFENAAKYRDYHRALS 237 Query: 238 RVTEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 +++KQ V+ T GDD+D+I ++ + V F+R GK++ + K + +++ Sbjct: 238 TISQKQKVTTTNGDDIDIIAMSKGIFYVTMQVFFMRDGKIVDREHFIIKDDYREKDEDII 297 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 +F+ QFYL + +P EIL+ SD L + + G K+ + G + + Sbjct: 298 SSFMKQFYL---NLMYIPKEILVHKLPSDLDALNLFIEKKKGNKVKINCPKLGKKKELVD 354 Query: 357 LARTNAATAL---TSKLSQQS-TVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASC 412 +A NA+ + +L ++ H L L +L L + R+E +DIS+T G Q+V S Sbjct: 355 MAFRNASDMMRKYEKRLEEKERKKHSGLNGLKEILNLKSINRIEAYDISNTSGVQSVGSM 414 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKIPDV 462 VVF R EYR++ I I DDY ++ +VL RR+ +A + K+PD+ Sbjct: 415 VVFQNGIAERKEYRKFKIKTIEGPDDYHSLEEVLTRRFERAKKEIKNNNTYTGFGKLPDL 474 Query: 463 ILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 IL+DGGKGQ+ AK V +L+ S + + G+ K D K + + E E + Sbjct: 475 ILMDGGKGQVKSAKKVLKDLNFSIE-----VAGLVK--DDKHTTRAIIY--ENEEIQIKK 525 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGL 582 P +I I++E+H AI HRK + S L+ I G+G ++++ LLK+ ++ + Sbjct: 526 RDPVYKLIYEIQEEAHRFAINYHRKLMTQTMKKSELDNINGIGKRKKENLLKHFKSVKNI 585 Query: 583 RNASVEEIAKVPGISQGLAEKIFWSLK 609 + AS+EE+ +V I + A +I K Sbjct: 586 KKASLEELMEVDLIGESQALEIIKYFK 612 >UniRef50_C0GMH4 Excinuclease ABC, C subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMH4_9DELT Length = 641 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 231/619 (37%), Positives = 342/619 (55%), Gaps = 32/619 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEAL 59 M QF++ F + PGVY M D +IYVGKAK+L+ R+SSYFRS+ S KT + Sbjct: 37 MQYQFNSSDFPR----DPGVYLMKDEQNRIIYVGKAKNLRSRVSSYFRSSRDPSPKTRVM 92 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMH 118 + ++ Q+D T +E EALLLE + IK ++PRYN++LRDDK Y L +P L + Sbjct: 93 LGRVLQVDYITTTSEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLDKSRPYPALELT 152 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R A+ YFGPF + A RET+ ++ ++F +R+C + +RNR RPCLQ+ I RC GPC Sbjct: 153 RSARRDGSVYFGPFTSAAAARETMKVINRLFYLRKCGHKKFRNRVRPCLQHFIRRCPGPC 212 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 VS EEY++++ + +FLSG+ +++ + M+ AS+ L+FE+AA +RDQI+AV++ Sbjct: 213 CLD-VSTEEYSREIRRLEMFLSGRSAELIKGMEKDMQEASRELDFEKAALLRDQIEAVKQ 271 Query: 239 VTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYF-PK--VPGGTELSE 294 T+ Q V G D+DV + G + VLF+RQGKVL S+++F P+ EL + Sbjct: 272 TTKSQSVVFPGTGDMDVFAPVYVQGGMGIGVLFVRQGKVLDSKNFFWPEHHPENDQELQD 331 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR- 353 + + + QFY S +P +ILL + D LL L E K+ + RG+ + Sbjct: 332 TLASLLSQFYGPDS---FIPEKILLPEKIHDPALL-HLLMEYRKGKVRL-VGARGESLKG 386 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASC 412 L +AR N + + LA V+ L E +R+EC D+SH G T Sbjct: 387 LLNIARQNCEQHARDRRDAGTPF------LAGVMGLEREPERIECIDVSHHAGRNTRMGV 440 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 V F A P + +YR YN+ ++PGDDY AM + ++RR + S PD++L+DGGKGQL Sbjct: 441 VTFVAGEPHKKDYRIYNLPSVSPGDDYQAMREFIKRR---SRSSSPWPDLLLVDGGKGQL 497 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG--LETLFFEPEGEGFSLPPDSPALHVI 530 + + + + L +AK R G + ++ SL P SP L + Sbjct: 498 GTVQKALQD---AGQEGLFALASIAKAETRARGGAQDQVYLPGRKYPLSLKPASPELLYL 554 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 Q IRDE+H A+G R + S LE I G+GPK+ + L K+ G LQ + AS EE+ Sbjct: 555 QRIRDEAHRFALGSMRNSLRRKSLQSDLEKIPGLGPKKVEALWKHFGSLQSILGASREEL 614 Query: 591 AKVPGISQGLAEKIFWSLK 609 +VPG A + SLK Sbjct: 615 MQVPGFGPETAGRTARSLK 633 >UniRef50_Q03F33 UvrABC system protein C n=7 Tax=Firmicutes RepID=UVRC_PEDPA Length = 594 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 214/605 (35%), Positives = 335/605 (55%), Gaps = 32/605 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + +PG Y+M + +IYVGKAK+LK R+ SYF+S+ KT LV++I D V Sbjct: 10 LALLPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYFKSSHEG-KTAKLVSEIADFDYIV 68 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T ++ EA LLE I+ +QP YN+ L+ YP+I ++ + PR+ + + G YFG Sbjct: 69 TSSDKEAFLLEITLIQKFQPYYNIKLKKGTGYPYIKITNEKDPRMEIVSSVRRDGGFYFG 128 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+PN YA ETL L+K++P+R+C + RPCL Y +G+CLG C + V +EEY Q Sbjct: 129 PYPNVYAAEETLHFLEKVYPLRRCNGF----QGRPCLYYHMGQCLGACFQE-VPKEEYDQ 183 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTG 249 Q+ ++ FL G ++ L ++M+ AS+ +EFE AA IRDQI + EKQ +SN Sbjct: 184 QIAKIKSFLRGNVAKIKQSLQTKMQKASEAMEFERAADIRDQIHYIEVTVEKQKIISNDS 243 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 D+ D G + + FIRQ +++ P T++++ + +F+ QFY ++ Sbjct: 244 TPRDLFNFYLDKGWLSIQIFFIRQSRLIKREKRL--FPIATDVNDELSSFILQFY--NNK 299 Query: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 + LP EIL+ L +K ++E+ G + V+T RG++ L+LA+ NA L K Sbjct: 300 NKVLPNEILVPSGLDNKI-----MAEILG--VPVRTPQRGEKKNLLELAKENAQITLEEK 352 Query: 370 LS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 +S + + L +PE R+E FD SH G + V++ VVF P + Y Sbjct: 353 FRLMELDESKTTGAMKEITDALGIPEGHRIEAFDHSHIQGSELVSAMVVFTDGKPDKKMY 412 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFA-ELD 483 R++ + + D+ A+ +V+RRRY + + + + +PD+IL+DGG QL AK+V EL Sbjct: 413 RKFKLNTVDHADEAASTREVIRRRYVRLLKEKQSLPDLILMDGGDIQLNAAKDVLVNELS 472 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 + H + G+ K K L F + + L P S +++Q I+DE H AI Sbjct: 473 L-----HIPVAGMVKNDKHKTS--DLIFGSQDQRVQLDPKSQGFYLVQRIQDEVHRFAIT 525 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 HR+ AK S L+ I+GVGPK R LLK G L +R+A+++EI ++ GI + +A+ Sbjct: 526 FHRQLHAKNSLASQLDLIQGVGPKTRNKLLKSFGSLNKIRDANLKEIEEL-GIPEKVAKT 584 Query: 604 IFWSL 608 I SL Sbjct: 585 IKVSL 589 >UniRef50_Q6MDC8 UvrABC system protein C n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=UVRC_PARUW Length = 610 Score = 361 bits (927), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 226/598 (37%), Positives = 341/598 (57%), Gaps = 22/598 (3%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVTVTHTETE 76 PGVY M + G V+YVGKAK+L++R+ YF R LVA+I I+ V +E E Sbjct: 15 PGVYLMKNEEGEVLYVGKAKNLRQRVKQYFVPGRDGRLMIPYLVAKINYIETIVVTSEKE 74 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD---THPRLAMHRGAKHAKGEYFGPFP 133 ALLLE+N IK ++PRYN LL+DDKSY + +S + RL ++G G YFGP+ Sbjct: 75 ALLLENNLIKQHKPRYNALLKDDKSYIALKISQNDAWATVRLVRYKGTPEPDGLYFGPYT 134 Query: 134 NGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVE 193 + A R+TL LL ++FP+RQC + + R+RPCL YQ+ RC+GPC + ++ EY Q ++ Sbjct: 135 SAQAARQTLDLLNRLFPLRQCSDQEFARRTRPCLLYQMKRCVGPCTQK-CTKGEYQQHLD 193 Query: 194 YVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT-GDDL 252 FL G++ VL L M S+ LEFE+A + I+ + + E Q+V G D Sbjct: 194 RTIKFLRGQNKDVLKDLYEEMRLLSEQLEFEKANHLLRTIRYIEKTIESQYVDRPLGHDA 253 Query: 253 DVIGVAFDAGMACVHVLFI-RQGKVLGSRSY-FPKVPGGTELSEVVETFVGQFYLQGSQM 310 D IG+ F G V VL I R GK++GSR + F + E E++ +F+ Q Y ++ Sbjct: 254 DAIGL-FRYGEHVVVVLMIFRGGKLVGSRHFEFDNII--EEDHELLTSFLLQHYEGATE- 309 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 +P EILL +SD+ + + LS +K+N+Q RG++ +++A+ NA ++ Sbjct: 310 --IPSEILLPSKISDEHPVEEILSARREQKVNLQIPQRGEKKALIEIAQKNAEALFKTQK 367 Query: 371 SQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 + + + L + +L L R+ECFD S+ G + V+S V F YR Y Sbjct: 368 DEATLREKTLLEMQELLFLTNYPTRIECFDNSNIAGSEPVSSMVAFTDGLKDSKRYRTYR 427 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 + + DDYAAM +VL RRY +A +++ +PD++++DGGKGQL A VF EL+++ Sbjct: 428 LKIGSKPDDYAAMYEVLTRRYKRAKEENDMPDLVVVDGGKGQLNIAIKVFEELNITGVD- 486 Query: 490 HPLLLGVAKGA---DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 LLG+AK A D+ E +F + E L +SP L ++Q IRDE+H AI HR Sbjct: 487 ---LLGLAKEAGRHDKGMTAEQVFTCYQKEPILLKANSPILFLLQKIRDEAHRVAISFHR 543 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 K+R+K S+L+ I G+GP +R+ LL + G L+ + A+ E+ +V GIS E I Sbjct: 544 KRRSKKTLKSALDDIPGIGPAKRKTLLTHFGSLKKIELAADAELREVKGISAANIEAI 601 >UniRef50_Q0B0A0 UvrABC system protein C n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=UVRC_SYNWW Length = 601 Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 218/609 (35%), Positives = 346/609 (56%), Gaps = 27/609 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D+ K LK V QPGVY + G V+YVGKA+ L++R+ SYF++ K +A+ Sbjct: 1 MGDEM-LKERLKKVPLQPGVYLFKNQEGQVLYVGKARVLRQRMRSYFQAPERMHPKVKAM 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 +A + D VTH+E EAL+LE+N IK Y+PRYN+ LRDDKSYP+I ++ D PR+ + Sbjct: 60 MAWVSDFDFIVTHSEMEALILENNLIKSYKPRYNIDLRDDKSYPYIKVTVADKFPRVYLA 119 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R K YFGP+ + ++R+TL LL +F +R C ++R RPCL +G+CL PC Sbjct: 120 REKKDGVSRYFGPYTDVTSLRDTLKLLNGVFGLRSC--RTMKSRRRPCLNRDMGKCLSPC 177 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G +SEEEY+Q+V+ + FL G +++ + M A+++LEFE+AAR+RDQIQ++R+ Sbjct: 178 -SGEISEEEYSQKVQALITFLEGDFQEIVREKEKEMAMAARSLEFEKAARLRDQIQSLRQ 236 Query: 239 VTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + EKQ + +LD++G+ V V +R GK++G +++ K P + +E +E Sbjct: 237 LGEKQKIELASPYELDLVGMLSGEKENLVLVFKVRSGKIVGKDTFWLKRPIQEDENEAME 296 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 F+ +Y + +P EILL S+ L+ L ++ ++ RG++ + L + Sbjct: 297 FFIKHYYDENP---DIPPEILLSHLPSESKLVEAWLKSRVSHRVELRVPQRGEKKQVLNM 353 Query: 358 ARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFD 416 NA L K +++ L+ LA VL L V R+ECFD+SH GE+TVAS VVF Sbjct: 354 LLENARLLLEEKQREENKQLAALSHLARVLDLEVVPNRLECFDVSHLAGEETVASMVVFV 413 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI----PDVILIDGGKGQL 472 P + YR + I +D A++ + +RRR A + PD+IL+DGG GQ+ Sbjct: 414 GGQPEKKAYRHFKIR-TQQNNDTASLAETVRRRLENARQANPAFLPEPDLILVDGGLGQV 472 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 V E+++ + PL K E ++ + + L L ++Q Sbjct: 473 NAVAAVLQEMNL----DIPLFALAEKN-------EEIYRPGKSQPLVLAARDNGLQLLQR 521 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI +RK+RAK +S+L+ I G+G +R++ LL + + ++ AS++EIA Sbjct: 522 LRDEAHRFAIEYNRKRRAKKIRSSALDEIPGIGKQRKKNLLVHFTSVAKIKEASLDEIAA 581 Query: 593 VPGISQGLA 601 VPG+++ A Sbjct: 582 VPGMNRKAA 590 >UniRef50_B5E2L2 UvrABC system protein C n=268 Tax=Bacilli RepID=UVRC_STRP4 Length = 615 Score = 360 bits (925), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 227/607 (37%), Positives = 347/607 (57%), Gaps = 38/607 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K+ L+ + + PG Y D GT+IYVGKAK+L+ R+ SYFR + + KTEALV++I + Sbjct: 6 KSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFE 64 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 VT + EALLLE N IK +P+YN++L+DDKSYPFI ++ + +PRL + R K G Sbjct: 65 FIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGGL 124 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGP+P+ A E LL +IFP R+C N S+ C Y IG+C+ + E Sbjct: 125 YFGPYPDVGAANEIKRLLDRIFPFRKCTNP----PSKVCFYYHIGQCMAHTI-CKKDEAY 179 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-S 246 + + V FL G+D++++ +L +M A+Q +EFE AA RD IQA+ + KQ V + Sbjct: 180 FKSMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMA 239 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 + DV G D G CV V F+RQGK++ P + E T+VGQFY + Sbjct: 240 KDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNL--FPYFNDPDEDFLTYVGQFYQE 297 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKP-RGDRARYLKLARTNAATA 365 S + +P E+L+ ++ ++ + A L KI KP RG++ + + LA NA + Sbjct: 298 KSHL--VPNEVLIPQDIDEEAVKA-----LVDSKI---LKPQRGEKKQLVNLAIKNARVS 347 Query: 366 LTSKLS-QQSTVHQR---LTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K + + +V + + L +L++P R+E FD S+ MG V++ VVF P Sbjct: 348 LEQKFNLLEKSVEKTQGAIENLGRLLQIPTPVRIESFDNSNIMGTSPVSAMVVFVNGKPS 407 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFA 480 + +YR+Y I + DDYA+M +V+RRRYG+ ++ PD+I+IDGG+GQ+ AK V Sbjct: 408 KKDYRKYKIKTVVGPDDYASMREVIRRRYGRVQREALTPPDLIVIDGGQGQVNIAKQVIQ 467 Query: 481 E---LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 E LD+ + G+ K D+ E LF +P E L +S ++Q I+DE Sbjct: 468 EELGLDIP-------IAGLQKN-DKHQTHELLFGDP-LEVVDLSRNSQEFFLLQRIQDEV 518 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HR+ R+K +S L+ I+G+GPKR+Q L+++ L ++ ASV+EI +V G+ Sbjct: 519 HRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV-GVP 577 Query: 598 QGLAEKI 604 + +AE + Sbjct: 578 RAVAEAV 584 >UniRef50_Q5GSR4 UvrABC system protein C n=10 Tax=Wolbachia RepID=UVRC_WOLTR Length = 606 Score = 360 bits (924), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 214/595 (35%), Positives = 328/595 (55%), Gaps = 18/595 (3%) Query: 19 GVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEAL 78 GVY+M V+YVGKAK+LK RLS+Y R S +T+ +++Q+ +++V VT E +AL Sbjct: 22 GVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKVEVLVTENEIDAL 81 Query: 79 LLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE--YFGPFPNGY 136 LLE IK +P YN++ +D +SYP+I +S +PR+A +RG K KGE Y+GPF + Sbjct: 82 LLEARLIKSLKPPYNIIFKDGRSYPYIVISKHNYPRIAQYRG-KFKKGEFHYYGPFISVA 140 Query: 137 AVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVR 196 AV++T+ LQK F +R C + + + RPC++YQI RC PCV G +++++Y Q V+ R Sbjct: 141 AVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCV-GKITKDDYCQSVKQTR 199 Query: 197 LFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIG 256 L G++++V QL S ME S+ +E AA RD+++ + ++ + + D D G Sbjct: 200 DTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMDFSFEKDADFFG 259 Query: 257 VAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGE 316 +A +AC+ VL R GS YF + E++ TF+ + Y + P + Sbjct: 260 IARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLY---NSANIPPAQ 316 Query: 317 ILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTV 376 I + ++ K ++ +L + + I LK N+ +L KL+ Sbjct: 317 IYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRSLEQKLTDYKNN 376 Query: 377 HQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP 435 ++ L+ + LP + KR+E +D SHT G Q V VV G L++EYR++ I G Sbjct: 377 LEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLKSEYRKFTIKGEIL 436 Query: 436 GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLG 495 GDDY M +VL RR+ D +PD +LIDGG G ++ +NV L++ N P Sbjct: 437 GDDYEMMREVLTRRFSNNTKDV-VPDFLLIDGGPGHISVVQNVLNTLNI----NVPFAC- 490 Query: 496 VAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNT 555 +AKG+ R AG E F+ P E F+L DS + +Q +R+E+H AI HRKKR K Sbjct: 491 MAKGSYRNAGNER-FYMPNREDFTLKNDSKVMLYLQSLRNEAHRFAITSHRKKRDKQFFV 549 Query: 556 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 S L I +G KR+ L+ + G ++ + AS+ EI V IS+ LAE I LKH Sbjct: 550 SPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVI---LKH 601 >UniRef50_A8GP33 UvrABC system protein C n=14 Tax=Rickettsia RepID=UVRC_RICAH Length = 651 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 225/640 (35%), Positives = 346/640 (54%), Gaps = 64/640 (10%) Query: 19 GVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEAL 78 GVYRM+D VIYVGKAK+LKKRL+ Y +S+L KT ++A ++ ++T++E EAL Sbjct: 23 GVYRMFDVNKQVIYVGKAKNLKKRLTHYIKSDL-DNKTLRMIANTCFLEYSITNSEVEAL 81 Query: 79 LLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKGEYFGPFPNGYA 137 LLE IK +QP++N+LL+DDKS+PFI L D P+L +RG G+ FGPF + Sbjct: 82 LLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGKTLNDGKCFGPFASATE 141 Query: 138 VRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRL 197 V TL LQKIF +R C ++ + +R+RPC+QY+I RC PCV G +++E+Y V V+ Sbjct: 142 VNTTLTELQKIFKLRSCTDNYFNSRTRPCMQYEIKRCYAPCV-GKINKEDYRDLVAQVKD 200 Query: 198 FLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGV 257 FL G+ + L +ME S + FEEAA IRD+I+A+ V K VS+ D D+I V Sbjct: 201 FLQGRTKALQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKSCVSDIVKDADIIVV 260 Query: 258 AFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEI 317 G CV V R + G+ YFP + EV+E F+ QFY Q + +P EI Sbjct: 261 VEKNGHYCVEVFLYRAWQACGNIPYFPTSTENSTKEEVLEYFLLQFY----QKQQVPAEI 316 Query: 318 LLDFNLSDKTLLADSLSELAG-RKINVQTKPRGDRARYLKLARTNAATALT---SKLSQQ 373 +++ ++DK + +++ ++ K+N+ G +A+ ++ A A +L K + Sbjct: 317 IINHEINDKENMIEAIKKINNITKLNIIIPISGGKAKLVQNAAIKALFSLEQYLKKFVKN 376 Query: 374 STVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG- 432 + + AL + ++PE R+E +D SH G+ V VV G + EYR ++++ Sbjct: 377 QEIMLEIKALFGLHEIPE--RIEIYDNSHIQGKFAVGVVVVVGKAGFDKKEYRVFSLSSC 434 Query: 433 ----------ITP---------------------------------GDDYAAMNQVLRRR 449 +P GDDY + QVL RR Sbjct: 435 DASLSSHAYPFSPRNLIAGSSTLTNPMDPVVRSREDDTSSTHNYAVGDDYEMLRQVLIRR 494 Query: 450 YGKAIDD-SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET 508 + ++ K+P +++IDGGKG L K V + + H + ++KG DR AG+E Sbjct: 495 LTRLKNEPHKLPSLMIIDGGKGHLGIVKEVMDKFAM-----HIPFVCMSKGVDRNAGIEQ 549 Query: 509 LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKR 568 F E F+L + P + +Q +RDE+H+ AI HR R++ SSL+ IEGVG R Sbjct: 550 -FHMTGKEVFTLDTNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKISSLDNIEGVGETR 608 Query: 569 RQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 ++ LL Y G + + +A+++E+ KV GI++ LA IF +L Sbjct: 609 KKALLHYFGSYKAVCDATIDELTKVNGINKSLAAMIFRTL 648 >UniRef50_O26541 UvrABC system protein C n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=UVRC_METTH Length = 579 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 227/590 (38%), Positives = 329/590 (55%), Gaps = 39/590 (6%) Query: 19 GVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEAL 78 GVY D V+YVGK+ ++KR+SSYFR R ++ ++ I+ +T E EAL Sbjct: 15 GVYIFRDRDDRVLYVGKSISIRKRVSSYFREQENPR-LRIMMRHLESIEYILTQNEKEAL 73 Query: 79 LLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAV 138 +LE N IK Y+P YNV L+DDK YPFI ++ + +PR+ + R Y+GPF + AV Sbjct: 74 ILESNLIKRYRPPYNVRLKDDKRYPFIKITDEEYPRVLIVRTIGRDSARYYGPFTDTGAV 133 Query: 139 RETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLF 198 R TL L++ +F IR C R PCL QI C PC +G +S E+Y + +E V LF Sbjct: 134 RRTLKLIKSLFRIRSC-----RRMDGPCLNSQIDLCYAPC-DGRISREDYREIIEKVDLF 187 Query: 199 LSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-DLDVIGV 257 G+ +V+ L M+ AS+ LEFE AARIRDQI+++R V E+Q S T D D++ + Sbjct: 188 FQGRYQEVIEVLEEEMKEASERLEFERAARIRDQIESIREVMERQHASFTDSIDQDIVAL 247 Query: 258 AFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEI 317 + V VL IR GK+ G + + G +E++E F+ Q+Y + R +P EI Sbjct: 248 ERGGDTSAVVVLQIRDGKITGKDDFILR--GSAPRTEILEAFLKQYY---AIPRRVPSEI 302 Query: 318 LLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVH 377 L + + D ++A+ LSEL G ++ + + G R L +A NA+ L Q+ V Sbjct: 303 LTQYPVED-GVIAEWLSELRGEEVKIHSPEGGAGRRLLNIAWKNASVI----LKQKGRVR 357 Query: 378 QRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG 436 L L LKLPE+ +RME DIS+ GE S VF P YRRY I+ P Sbjct: 358 DALLQLKDDLKLPEIPRRMEGLDISNIAGESATGSVAVFIDGKPSSGSYRRYRISAQGP- 416 Query: 437 DDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGV 496 DDYA M +++ RRY + + PD++LIDGGKGQL A V H ++G+ Sbjct: 417 DDYAMMRELVERRYSSP--ELRKPDLVLIDGGKGQLGVALEALKNCGV-----HVPVVGI 469 Query: 497 AKGADRKAGLETLFFEPEGEGFSLP--PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN 554 AK E ++ G S P D AL +++H+RDE+H A+ HR R + Sbjct: 470 AKKR------EEVYL----PGLSEPVDVDDGALQILRHLRDEAHRFAVKYHRTIRDRDSL 519 Query: 555 TSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 S L+ I GVGP R++ LL++ G L G+R+ASVEE+A +PG+++ +AE+I Sbjct: 520 ESELDGIRGVGPVRKRALLEHFGSLDGVRDASVEELASIPGMTREVAERI 569 >UniRef50_B5YF86 UvrABC system protein C n=2 Tax=Dictyoglomus RepID=UVRC_DICT6 Length = 599 Score = 358 bits (919), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 224/607 (36%), Positives = 352/607 (57%), Gaps = 30/607 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D K ++ GVY YD G VIYVGKAK+L+KR+ SYF N S K+ ++ + + Sbjct: 9 DLKQKVENFPESTGVYIFYDHSGKVIYVGKAKNLRKRVLSYF--NDDSPKSNYILKKAKN 66 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 I+ +T TETEAL+LE IK Y+P NV LRDDK YP + L+ + +PRL + R + Sbjct: 67 IEFYITDTETEALILESVLIKKYRPIMNVQLRDDKQYPMLKLTLYEEYPRLVLARRFEDD 126 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLV 183 Y+GP+ VRET+++++KIF +R C ++ +++ RPCL Y IG C PC + + Sbjct: 127 GARYYGPYTQSGTVRETISMVKKIFNLRSCNWNLPKSKPKRPCLNYFIGNCKAPC-QNYI 185 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 ++EEY + V+ V FL GK ++++ +L +M+ S+NLEFE+AA+IRD+I+ ++ ++EKQ Sbjct: 186 TKEEYWEIVKGVIDFLDGKYEEIIEKLYDQMQEYSKNLEFEKAAKIRDKIRLLQNLSEKQ 245 Query: 244 -FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 VS ++ D+I + A V IR+GK++ R + +P E++E+FV Q Sbjct: 246 KIVSFNRENKDLIQFYVEDHKAKALVYLIREGKLIEKRIFNLTLPEICSNDELIESFVLQ 305 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTL-LADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 +Y +G +P I++ S++ + L + L + G ++ ++T + + L +A + Sbjct: 306 YYSRGE----IPEVIVVPSPFSEEEVNLKEFLCKRKGSEVVLRTPENEEEEKLLGMALKD 361 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 LT + + V L+ L + L + +E +DIS+ G + V S V F P Sbjct: 362 ----LTIESIKSEKVWLALSELQRIFNLQNLPVSIEGYDISNLQGREAVGSRVYFQNGYP 417 Query: 421 LRAEYRRYNITGITP--GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 + +YRRY I TP +DY + +V+RRR K I++ +PD++LIDGGKGQL+ V Sbjct: 418 EKTKYRRYKIK-YTPELPNDYLMLQEVIRRRL-KNIEEDPLPDIMLIDGGKGQLSAVLEV 475 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 F EL + +L +AK E +F E L DSPALH++Q +RDE+H Sbjct: 476 FNELKIE----PKFILALAKEK------EEIFVPGRSEPILLSYDSPALHLLQQVRDEAH 525 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A+ HRK R+K S L+ I GVG KR ++LL+ L+ L+ AS+E++ KVPGIS+ Sbjct: 526 RFAVSYHRKLRSKKLMDSHLDKIPGVGEKRMKILLEAFSTLENLKKASLEDLKKVPGISE 585 Query: 599 GLAEKIF 605 +AEKI+ Sbjct: 586 KIAEKIY 592 >UniRef50_UPI0001C3237F excinuclease ABC, C subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3237F Length = 647 Score = 358 bits (919), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 232/621 (37%), Positives = 345/621 (55%), Gaps = 38/621 (6%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + + QPGVY +A TVIYVGKAK +KKR++S+F SN +++ L+ I +I+ V Sbjct: 36 RALPDQPGVYLFRNAKSTVIYVGKAKSIKKRVASHF-SNPSTQMGRDLLPMIDRIESLVV 94 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRGAKHAKGEYFG 130 TE EALL E N+IK Y+PR+N+ LRDDKSYP+I +S D PR+ R + YFG Sbjct: 95 STEAEALLAEQNFIKQYKPRFNIRLRDDKSYPYIGISLDEDFPRVYFTRERHRRERAYFG 154 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLVSEEEYA 189 P+ N VRETL LL KIF R C+ RS PCL Y I RC PCV+ V++E Y Sbjct: 155 PYSNAKRVRETLDLLGKIFLFRSCDGPTPGRRSGSPCLDYYIKRCEAPCVD-YVTKEHYR 213 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN-T 248 ++ V FLSG+ + + + M+ A+ FE+AAR R++++++R + E+Q V+N + Sbjct: 214 TSIDGVIDFLSGRYRAIEAAIEANMKDAAAEQRFEDAARERNRLRSIRSLLERQRVTNAS 273 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 G LD I +A + A V IR G + + ++ G +L V E F+ Q+Y GS Sbjct: 274 GGTLDAIAIAVEGNDANAQVFQIRDGVLSDRQGFYLDNQAGDDLPAVAEAFLLQYY--GS 331 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT- 367 + P ++ +A +L+E G + ++ RGD+ R L+LA NA AL Sbjct: 332 SLMIPPLLVVQREVGEAAQTIAAALAERRGGPVELRAAERGDKRRILELAERNARLALDQ 391 Query: 368 SKLSQQSTVHQRLTALA---SVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L + QR+ AL + L L + R+ECFDISH G TVAS VVF+A P +A Sbjct: 392 ERLRSERRRQQRVDALEGLQAALGLDAIPLRLECFDISHVGGTHTVASMVVFEAGAPKKA 451 Query: 424 EYRRYNITGITPG--DDYAAMNQVLRRRYGK--------AIDD------SKIPDVILIDG 467 +YRR+ + G DD+A+M +VL RR + DD + +P+V++IDG Sbjct: 452 DYRRFTLREGVEGVPDDFASMEEVLSRRLAQYERQHDRSPFDDGYDASFASLPNVVVIDG 511 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL+ V LD + + ++ +AK +E +F LP D+P L Sbjct: 512 GKGQLSAGMRV---LD-GFRRRGVTIVSLAKR------IEEVFVPGREAPIVLPHDTPEL 561 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 ++Q IRDE+H AIG HR +R + TS L+++ GVGP R++ LLK+ G + A+ Sbjct: 562 QLLQRIRDEAHRFAIGHHRIRRDRAMTTSVLDSLPGVGPARKRALLKHFGSPEAFLAATR 621 Query: 588 EEIAKVPGISQGLAEKIFWSL 608 EE+ VPG+ +A ++ + Sbjct: 622 EELEAVPGLPGKVARDLYVQI 642 >UniRef50_A1BED8 UvrABC system protein C n=12 Tax=cellular organisms RepID=UVRC_CHLPD Length = 631 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 217/608 (35%), Positives = 335/608 (55%), Gaps = 41/608 (6%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVT 71 ++ S PGVY+ +A G VIY+GKAK+L+ R+ SYFR+ KT +V +I I+V +T Sbjct: 23 SLPSSPGVYQFKNAQGRVIYIGKAKNLRNRVRSYFRNPQQLFGKTLVMVGKIADIEVIIT 82 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGP 131 +E EAL+LE+N IK +PRYNV L+DDK+YP++ ++ + PR+ + R K +FGP Sbjct: 83 SSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITNEPFPRILVTRQVKKDGSTWFGP 142 Query: 132 FPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 + +R L + IFPIR C+ ++ R + + CL Y I +C GPC EGL++EE Sbjct: 143 YTEARQLRSILDFIGSIFPIRSCKLRLSPENISRGKFKVCLDYHIHKCKGPC-EGLLTEE 201 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FV 245 EY + + L GK + L RM + ++ L+FE+AA ++ QI +++R E+Q V Sbjct: 202 EYLLMIVEITRLLKGKTSATIRSLNERMLSFAKELKFEQAAELKTQIDSLKRYAERQKVV 261 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 ++ D DV VA C V IR+GK+LGS + G + +++ V ++YL Sbjct: 262 TSDTLDRDVFAVASRNDDGCGVVFKIREGKLLGSERLYMNNTEGVSVQDLLARVVERYYL 321 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPR----------GDRARYL 355 + + LP EI L L + ++L L KI+ + K + G++A + Sbjct: 322 ETCNL--LPDEIFLQTELPAEE--KETLENLLISKISAEGKQKRTIRLTVPIIGEKAHLI 377 Query: 356 KLARTNAATALTSKLSQQST------VHQRLTALASVLKLPEV-KRMECFDISHTMGEQT 408 +L R NA L L Q+ H L ALA +L LP+ R+ECFD SH G Sbjct: 378 QLCRENARHHLEEYLIQKQKRGEALREHSGLIALAELLHLPKTPNRIECFDNSHFHGTDY 437 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDG 467 V+S V F +++YR++ + + DDYAAM++VL RRY + + +PD+I++DG Sbjct: 438 VSSMVAFVHGKAKKSDYRKFKLKTVQGSDDYAAMHEVLTRRYSGTLSVELPLPDLIVVDG 497 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL+ A V L + ++G+AK +E +F + F+LP SPAL Sbjct: 498 GKGQLSTAVKVLVSLKLDIP-----VIGLAK------RIEEIFTPHTSDPFNLPKTSPAL 546 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +IQ +RDE+H A+ HRK R + + L TI+G+G K Q LL++ G + +R A V Sbjct: 547 KLIQQLRDEAHRFAVTYHRKLRTERTLETELTTIQGIGEKTAQKLLRHFGSVDLIRTAGV 606 Query: 588 EEIAKVPG 595 +E+ G Sbjct: 607 DELRAAAG 614 >UniRef50_B7K124 Excinuclease ABC, C subunit n=5 Tax=Cyanobacteria RepID=B7K124_CYAP8 Length = 617 Score = 357 bits (915), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 217/617 (35%), Positives = 352/617 (57%), Gaps = 36/617 (5%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQ 64 D + LK + S+PGVY M + GG ++Y+GK+K L+ R+ SYFR S S + +V Q+ Sbjct: 13 DLETRLKELPSEPGVYLMRNQGGEILYIGKSKKLRSRVRSYFRPSQPHSPRIGLMVQQVA 72 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK- 122 I+ VT TE EAL LE N IK +QP +NVLL+DDK YP++ ++ T+PR+ + R + Sbjct: 73 DIEFIVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSQTYPRIFITRKRRL 132 Query: 123 -HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + + Y+GP+ + + +R+TL L++++FP+RQ ++++R PCL Y IG+C G C +G Sbjct: 133 NNERDRYYGPYVDTHLLRQTLQLVKRVFPLRQRPKPLFKDR--PCLNYDIGKCPGVC-QG 189 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L+S E+Y + VE V + G+ ++L +L +ME A+ L FE+AA IRDQ++A+ +T Sbjct: 190 LISPEDYHKIVEKVAMIFQGRTGELLEKLHQQMEKAATELRFEQAAMIRDQLKALNALTV 249 Query: 242 KQFVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 Q VS D + D I +A D C+ + IR G+++G +F T +++ Sbjct: 250 DQKVSLPDDTISRDAIALAKDTKHCCIQLFQIRAGRLVGRLGFFADAESATP-GAILQRV 308 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Y Q + +P EIL+ + L + +LA LS+ G+K+ + R +A+ ++L Sbjct: 309 LEDHYWQADGVE-IPSEILVQYELPESEILAQWLSDRKGKKVTITVPQRQTKAQLIELVE 367 Query: 360 TNAATAL--TSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFD 416 NA L T + ++++ + L LA +L LP++ +R+E +DISH G VAS VVF Sbjct: 368 RNANYELERTQRTTERNLIS--LEDLAQILDLPDLPRRIEGYDISHIQGSNAVASQVVFI 425 Query: 417 ANGPLRAEYRRYNITG----ITPGDDYAAMNQVLRRRY----GKAIDDSKIPDVILIDGG 468 P + YR Y I I DD+A+M +V+ RR+ K ID PD+I+IDGG Sbjct: 426 DGIPAKQHYRHYKIKNPNVTIGHSDDFASMAEVIGRRFRHNQAKNID---YPDLIMIDGG 482 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL+ V A L+ ++ +AK E +F E + P + Sbjct: 483 KGQLS---AVVAILEELNLLETLEVISLAKQR------EEIFLPGESYPLDTNAEQPGVQ 533 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 +++ +RDE+H A+ HR++R K S L+ I G+G +R++ LL Y + +R AS+E Sbjct: 534 LLRRVRDEAHRFAVSFHRQQRLKKSRRSRLDEIPGLGFERQKQLLAYFHSIDYIREASIE 593 Query: 589 EIAKVPGISQGLAEKIF 605 ++ +V GI + LA +I+ Sbjct: 594 QLQQVSGIGKALATEIY 610 >UniRef50_Q24WC0 UvrABC system protein C n=16 Tax=Firmicutes RepID=UVRC_DESHY Length = 607 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/587 (35%), Positives = 328/587 (55%), Gaps = 37/587 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + +PGVY M DA G +IYVGKAK LK R+ SYF + + KT+ +++ I + + Sbjct: 24 LSLLPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYFTGS-HNGKTQLMISLIADFETII 82 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T +E EALLLE N IK + P+YN+LLRDDK+YPFI ++ + HPR+ + R K G+Y+G Sbjct: 83 TDSEVEALLLECNLIKKHNPKYNILLRDDKTYPFITITDEAHPRILVTRQVKKGAGKYYG 142 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+PN A +E LL ++FP R+C ++PCL Y +G+CLGPC + V +E Y + Sbjct: 143 PYPNATAAKEAARLLNRLFPFRKCRQIP----NKPCLYYHLGQCLGPC-QVDVPKEAYDK 197 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS-NTG 249 + FL G +L L +M+ AS+NLEFE A RD ++ +++V EKQ ++ N Sbjct: 198 IRKEAAAFLKGDQGAILKALEKKMKEASENLEFERAKEYRDLMEDLKKVGEKQNITLNDF 257 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 D DV+G A+ C+ + ++RQGK+L ++ P E E +F+ QFY + S Sbjct: 258 VDRDVVGYAYTQDQLCIQIFYLRQGKLLSRDNFI--FPYYEEPEEAFVSFLAQFYTESS- 314 Query: 310 MRTLPGEILL-DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 LP EILL ++S T L + G+K ++ +++A NA T L Sbjct: 315 --ALPQEILLPPLDISVLTKLFPMVVPQKGQKRDL-----------VQMAMENAQTTLHE 361 Query: 369 KLSQQ----STVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 ++S + + Q L + + L +P ++ +E FDIS+ G +VA + F P R++ Sbjct: 362 QISIEIRNLTECTQALAEIGNALGIPSLRTIESFDISNIAGTHSVAGMIQFLDGKPNRSQ 421 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELD 483 YR++ I + DD A+M+QV+ RRY + ++ +PD+IL+DGGKGQ+ A L+ Sbjct: 422 YRKFKIQPMPNMDDTASMHQVIERRYARLQQENLPLPDLILVDGGKGQIHAALAALHSLN 481 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 + + G+ K + + + SL S +++ I++E H AI Sbjct: 482 AAIP-----VAGMVKNDKHQT---SALIDAMDRIHSLDRRSAGFRLLERIQNEVHRFAIT 533 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 HR++RAK S L+ I GVGPKRRQ LLK+ + +R A++EE+ Sbjct: 534 FHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEEL 580 >UniRef50_A9KSS0 UvrABC system protein C n=59 Tax=Firmicutes RepID=UVRC_CLOPH Length = 628 Score = 353 bits (907), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 232/633 (36%), Positives = 357/633 (56%), Gaps = 52/633 (8%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS--NLASRKTEALVAQ 62 FD LK + ++PGVY M++ +IYVGKA LK R+ YF+S NL++ K + +V+ Sbjct: 2 FDLDEELKKLPAKPGVYIMHNNKDEIIYVGKAISLKNRVRQYFQSSRNLST-KIQQMVSN 60 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 I + + +E EAL+LE N IK ++P+YN +L+DDKSYP+I ++ + +PR+ R Sbjct: 61 IDHFEYIIVDSEMEALVLECNLIKEHRPKYNTMLKDDKSYPYIKVTVNEAYPRVLFARQQ 120 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCV 179 K K +YFGP+ + AV++ L LL++++ IR C ++ ++ RPCL Y I +C PC Sbjct: 121 KKDKAKYFGPYTSLGAVKDILDLLRRLYFIRTCNRNLPKDIGLERPCLYYHIKQCKAPC- 179 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 +G +SEEEY + ++ V FL+G V L ++M+ AS+NLEFEEAA RD I +V ++ Sbjct: 180 QGYISEEEYRKSIDEVIEFLNGNYALVTKDLQAKMKAASENLEFEEAAGYRDLILSVEKL 239 Query: 240 TEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 ++KQ S+ G D D+I A A V FIR GK+LG Y S ++ Sbjct: 240 SQKQKASDVDGVDRDIIAFASTGDEAVAQVFFIRDGKMLGREHYHITGVANESRSSIMTN 299 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 FV QFY + +P E+LL L ++ L+++ LS G+K+ + +GD+ R ++LA Sbjct: 300 FVKQFY---AGTPYIPRELLLSEPLEEEELISEWLSTKRGQKVRIHVPKKGDKERLVELA 356 Query: 359 RTNAATALTSKLSQQSTVHQRLTA--------LASVLKLPEVKRMECFDISHTMGEQTVA 410 NA+ L Q S QR A +A +L LP + RME FDIS+T G ++V Sbjct: 357 EKNASLVL----QQDSDKIQREEAKTIGAVRHIADMLSLPGIYRMESFDISNTNGFESVG 412 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYG-----------KAIDDS-- 457 S VV++ P R +YR++ I + DDYA+M +VL RR+ K ID S Sbjct: 413 SMVVYENGKPKRNDYRKFKIKSVQGPDDYASMREVLTRRFSHGQKEAEELAKKNIDISHG 472 Query: 458 ---KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE 514 + PD+IL+DGG+GQ+ A V EL ++ P+ V R G L+F Sbjct: 473 SFTRYPDLILMDGGRGQVNIALEVMNELKLTI----PVCGMVKDDNHRTRG---LYF--- 522 Query: 515 GEGFSLPPD--SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQML 572 + +P D S A +I I+DE+H AI HR R+K + S L+ I+GVG RR+ L Sbjct: 523 -DNVEIPIDTHSEAFRLITRIQDETHRFAIEYHRSLRSKAQVHSILDDIDGVGQTRRRAL 581 Query: 573 LKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 +K+ + ++ AS+E++ VP +++ A K++ Sbjct: 582 MKHFASIDAIKAASMEDLMAVPSMNKLSAAKVY 614 >UniRef50_D1CFI6 Excinuclease ABC, C subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFI6_THET1 Length = 613 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 218/605 (36%), Positives = 332/605 (54%), Gaps = 30/605 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L+ + +PGVY M D G VIYVGKAK L+ R+ SYF S K +V QI ID V Sbjct: 14 LQAIPEKPGVYLMKDKHGKVIYVGKAKVLRNRVRSYFSSKHLPEKIREMVPQIHDIDYIV 73 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T +E EAL LE IK + P+YN + +DDK P+I ++ + PR+ R + +Y+ Sbjct: 74 TDSEHEALTLEVTLIKHHMPKYNSMFKDDKRLPYIKVTVQEEFPRVLKCRQIINDGSKYY 133 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENS-VYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 GP+ + E + L+ + F + EN + +SRPCL Y + RCLG C G +EY Sbjct: 134 GPYTALGSAAEAIKLIHQHFMLCHKENEPIDGKQSRPCLPYYLHRCLGACA-GRADPQEY 192 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSN 247 E V LFL GK D++ +L +ME A++NLEFE+AA R+QI+A+ + ++Q V Sbjct: 193 RAATEQVILFLEGKHDELTEKLRRKMEEAAENLEFEKAALYRNQIKAIEDIRQRQKVVLP 252 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 T +D+D+I +A D G A + LFIR G+++G ++ ++++ + QFY+ G Sbjct: 253 TNEDMDIISIALDGGEAGIERLFIRDGRLVGHDHSVVELIEDQSPGQIIQIALEQFYI-G 311 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +PG I+L + + L+ +L E R+I ++ G++ + +A NA L Sbjct: 312 TY--NIPGRIVLQYPPDEIELIQSALQEYHKREIILEVPTEGEKLELVNMAAQNAKEGLE 369 Query: 368 SK----LSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 K LS++ + L L+LP + R+EC+DIS+ G V S VVF+ P R Sbjct: 370 RKRFKWLSEEQKRTGAMLELQKELQLPIKPSRIECYDISNVQGADAVGSMVVFEDGAPAR 429 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-------KIPDVILIDGGKGQLAQA 475 +YRR+ I G+ +D+ M +VL RR+ +A + K+PD+I+IDGGKGQL A Sbjct: 430 NQYRRFRIKGVEGPNDFEMMREVLTRRFKRATSNEYRETSWGKLPDLIIIDGGKGQLGVA 489 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V + N P + G+AK E LF + LP DS AL+++Q IRD Sbjct: 490 VEVLQSFGLG---NIP-VFGLAKQQ------EELFKPGRSDSIMLPRDSEALYLLQRIRD 539 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI-AKVP 594 E+H A+G HR K S L+ + G+GPKR++ L++ G + +R AS++EI A V Sbjct: 540 EAHRFALGYHRSLHTKKSVGSILDQVPGIGPKRKKALIQAFGSVSKIREASIDEIMAAVK 599 Query: 595 GISQG 599 GI + Sbjct: 600 GIDRA 604 >UniRef50_Q4JVI8 UvrABC system protein C n=8 Tax=Corynebacterium RepID=UVRC_CORJK Length = 690 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 241/692 (34%), Positives = 352/692 (50%), Gaps = 112/692 (16%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVT 71 ++ + PGVY DA VIYVGKAK+L+ RLS+YF+ + +T A+V + TV Sbjct: 12 SIPTDPGVYTFRDAHERVIYVGKAKNLRARLSNYFQDLDQLHPRTRAMVQSANHVQWTVV 71 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFG 130 +E EAL LE+ +IK + PR+NV+ RDDK+YP + +S + PR M+RG + YFG Sbjct: 72 SSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFMYRGPRRKGVRYFG 131 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRCLGPCVEGLVSEEE 187 P+P +A+RETL L ++FPIR C VYR RPCL I RC PCV G ++ E+ Sbjct: 132 PYPKAWAIRETLESLTRVFPIRTCSAGVYRRHEALGRPCLLGYIDRCSAPCV-GKITPED 190 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ---F 244 + V+ FL+G + VL ++ ME AS+NL+FE AA +RDQ+QA+++ E+Q F Sbjct: 191 HRALVDQFSSFLAGNTEPVLRRVRKEMEQASENLDFERAASLRDQLQAMQKSMERQAVVF 250 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE--VVETFVGQ 302 NT D D+I D A V + +R G++ G R + V +LSE +V F+ Q Sbjct: 251 SDNT--DADLIAFVADELEAAVQIFHVRGGRIHGQRGW---VVEREDLSEEKLVADFITQ 305 Query: 303 FYLQGS-----------------------------------------QMRTLPGEILLDF 321 FY + + Q+ +P EIL+ Sbjct: 306 FYGETAELAKATETQVGGASGPEVDRDLARAINPAAAQDLGDLVGDVQVTPVPREILVHA 365 Query: 322 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS-KLSQQSTVHQRL 380 D LA L+ L G + ++ RGD+ + A TNA AL KL + + R Sbjct: 366 MPDDADDLAAWLTSLRGSNMQIRVPQRGDKKALMTTAETNATQALAQHKLKRAGDITARS 425 Query: 381 TALASV---LKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI---TGI 433 AL + L + E R+EC DISH G VAS VVF+ P +A+YRRY I G Sbjct: 426 AALKELQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAAGD 485 Query: 434 TPGDDYAAMNQVLRRRYGK---------AIDDSK-------------------------- 458 DD A++ +V+RRR+ + A DD+ Sbjct: 486 GHSDDVASIAEVVRRRFKRYQQDKSAVPAGDDAGDLLEGETELEDNSAEGTDPATEKRKF 545 Query: 459 --IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGE 516 P + ++DGG Q+ A+ V EL V N L+G+AK LE ++ E Sbjct: 546 AYPPQLFIVDGGLPQVNAAQEVLDELGV----NDVTLVGIAK------RLEEIWVPGEEY 595 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 +P +SPAL+++Q++RDE+H AI HR++R+ S L+ I G+GPKRR+ L+K Sbjct: 596 PIIVPRNSPALYLVQNLRDEAHRFAITFHRQQRSARMRRSKLDDIPGLGPKRRKQLVKEF 655 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G + ++ ASVE+IA +PG LA+ I +L Sbjct: 656 GSVARVKEASVEDIAALPGFGPKLAQLIHDAL 687 >UniRef50_C6E9G2 UvrABC system protein C n=3 Tax=Geobacter RepID=UVRC_GEOSM Length = 649 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 219/608 (36%), Positives = 336/608 (55%), Gaps = 14/608 (2%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQI 66 +A ++ S PGVY M A TVIYVGKA++LKKR+ SY SR +V + + Sbjct: 4 QAMIENFPSSPGVYLMKSADDTVIYVGKARNLKKRVRSYAGDTRDSRIHIRFMVQLVHSV 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D VT TE EAL+LE+ IK ++P+YN+ LRDDK+Y + + + PRL++ R Sbjct: 64 DYLVTDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEQFPRLSIVRKIPSDG 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+ + A +E L L K+FP+R + R RPCL +QI +C PC GL+S Sbjct: 124 ARYFGPYASATAAKEVLKQLYKMFPLRHYPLATCMARKRPCLYHQIKQCSAPCC-GLISA 182 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EYA + LFL GK+++V S+M AS+ + +E+AAR RD ++A+ E+Q + Sbjct: 183 AEYAALAQGAALFLEGKNNEVARLYRSKMNLASEQMRYEDAARYRDLLRAIEVTVERQKM 242 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D DV GV +A + +L IR G + G RS+ E E + +F+ ++Y Sbjct: 243 VAQSGDSDVFGVHREADRMQIALLHIRGGTLTGGRSFL--FDWELETEEGLASFLNEYYD 300 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P ++L+ +++ L + LSE AG+K+ + RG + +KLA NA TA Sbjct: 301 LDA---PIPPQVLIPLPIAEPAALEELLSEKAGKKVTIAVPQRGPKLEMVKLAGKNAETA 357 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 +L+++S+ LT LA L LP +R+EC+DIS+ GE V S VVF ++ Sbjct: 358 AQERLARESSSATLLTELAEKLNLPHPPRRIECYDISNIQGEMAVGSRVVFIDGRADKSL 417 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YRRY I G+ DD+A M +VL RR+ KA + PD+I++DGG GQL V EL+V Sbjct: 418 YRRYRIKGVLQSDDFAMMREVLSRRF-KADSHEEKPDLIVVDGGLGQLGVLNAVLDELEV 476 Query: 485 SWDKNHPLLLG-VAKGADRKA---GLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + + L VA+ + + E +F +L S L ++ IRDE+H Sbjct: 477 TGVEAAGLAKSRVARDMESEEIERSDERVFRPGRKNAIALRQSSAPLLLLVRIRDEAHRF 536 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A+ H+ R+KV S L+ + G+G KR++ LLK+ G L+ ++ A++EE+ PG+++ Sbjct: 537 AVTYHKDVRSKVLTGSELDGVAGIGEKRKKALLKHFGSLKRVKEATLEELKGAPGMTESA 596 Query: 601 AEKIFWSL 608 A + L Sbjct: 597 ARALVERL 604 >UniRef50_B6AR33 Excinuclease ABC, C subunit (UvrC) n=3 Tax=Leptospirillum RepID=B6AR33_9BACT Length = 632 Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 219/606 (36%), Positives = 338/606 (55%), Gaps = 15/606 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDVT 69 L+T+ +PGVY M G V+YVGK++ LK R+ SYF+ + + S + LV++++ +++ Sbjct: 21 LRTLPEEPGVYLMKSETGEVLYVGKSRSLKDRVRSYFQETRVRSARIALLVSRVRDLEII 80 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFI-FLSGDTHPRLAMHRGAKHAKGEY 128 T TE +AL+LE+ IK Y+PRYNVLLRDDK+YP++ F D PRL + R ++ Y Sbjct: 81 RTKTELDALILENTLIKRYRPRYNVLLRDDKTYPYLKFSWNDPFPRLTITRRVRNDGNLY 140 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYR-NRSRPCLQYQIGRCLGPCVEGLVSEEE 187 FGP+PN A+++TL L+++ FP+ C + + RPC++YQI RCLGPCV GL +E E Sbjct: 141 FGPYPNPSAMKDTLRLIRRTFPLATCTIPLDQPTLERPCVEYQIKRCLGPCVAGLTTETE 200 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y Q VRLFL GK + +L L + M+ ++NLEFE+AA +RD+ + V +V EK VS Sbjct: 201 YRQVAMGVRLFLQGKSNDLLFLLENEMKARAKNLEFEKAAAVRDRYRNVLQVLEKHTVSF 260 Query: 248 T-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 +D + +A A + V+ IR G ++G K E++ F+ QFY Sbjct: 261 PFQHPIDGLYLARSGTTALMLVMHIRNGLLIGKEEVELKNTEEASDEELLVAFLEQFY-- 318 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADS-LSELAGRK-INVQTKPRGDRARYLKLARTNAAT 364 G + LPGEILL +L ++ L+ S +SE G + + + RGD+ L L R NA Sbjct: 319 GKESAFLPGEILLPVSLPEEDLMTLSWMSEKKGEDPVRIISPKRGDKKMILDLVRENAEE 378 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKRME-CFDISHTMGEQTVASCVVFDANGPLRA 423 AL ++ ++ + L S+LK R+ C DIS+T VAS V F P ++ Sbjct: 379 ALNAREKRKLNSTELLDEARSLLKRDRPPRLLCCVDISNTGDLLPVASLVTFQDGKPEKS 438 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 YR++ I DD+ +++V+ R+Y ++ +PD+++IDGG QL D Sbjct: 439 LYRKFRIRYEKGQDDFKMLSEVMERQYR----ENPLPDLLVIDGGPLQLDACVRTLE--D 492 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 + ++ +AK K E +FF + LP P H++ +RDE+H AI Sbjct: 493 MGHHDASRRVVSLAKERTNKNKSERIFFPGQENPLILPGHHPVTHLLVRLRDEAHRFAIK 552 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 HR R + S L I GVGP R + LL+ G ++ L A++E+I + G+S L+ Sbjct: 553 YHRTLREEYLTHSRLLNIPGVGPAREKKLLQSFGSVKNLMEATIEDIVQNTGLSVALSTS 612 Query: 604 IFWSLK 609 I+ SL+ Sbjct: 613 IYQSLR 618 >UniRef50_Q6SI31 Excinuclease ABC, C subunit n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI31_9BACT Length = 622 Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 212/617 (34%), Positives = 334/617 (54%), Gaps = 41/617 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D K + T+ QPGVY ++ G IYVGKA L+ R+ SY ++ AS + +AL+ ++ Sbjct: 5 DLKVQISTLPEQPGVYLYFNGAGDTIYVGKASVLRDRVRSYLSAHGASPRIDALLDDVES 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 +++ VT + EAL LE+N IK P+YNVLLRDDK+YP++ L+ + PR+ + R + Sbjct: 65 LEIIVTDSVAEALALENNLIKHRAPKYNVLLRDDKNYPYLQLTTNEAFPRVLVSRRVQRD 124 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 Y GPF R+T+ L ++F IR C + R RPCL+Y I RCL PCV + S Sbjct: 125 GAFYAGPFLPTALARKTMLLTHRLFGIRSCNEVITGRRDRPCLEYDIKRCLAPCVANVCS 184 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ- 243 +E YA+ VE+ R+FL G++ ++L L SRM A++N FE+AA RD I+ ++ + +Q Sbjct: 185 QERYAEAVEHTRMFLEGRNHELLNTLTSRMTQAAKNEHFEQAAEWRDAIRTIKALRHRQQ 244 Query: 244 -FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE--VVETFV 300 T D D G+ +H+ +R+G+V+ V + E +V+ V Sbjct: 245 KMSLPTLGDRDAFGMRLGPAGVVIHIFQMRRGRVIDRIELVADVEELRDNREEYIVQVAV 304 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 QFY + R P E+LL + D + + LSE A +K+++ RG++ L+LA Sbjct: 305 QQFY----EARPAPPEVLLPTIIDDLEAVEEWLSERAKKKVHLSVPKRGNKRALLELASR 360 Query: 361 NAATALTSKLSQQSTVHQRLTALASV-LKLP-EVKRMECFDISHTMGEQTVASCVVFDAN 418 NA ++ S++ H + V L L + R+ECFDIS G TV + VV + Sbjct: 361 NATIGYKARYSEEVVSHHAAMEILRVELDLATSLHRIECFDISTIQGSDTVGAMVVCENG 420 Query: 419 GPLRAEYRRYNITGITPG-------------------DDYAAMNQVLRRRYGKAIDD-SK 458 +R+ YR++ I G+ G DD++AM++++ RRY + +++ Sbjct: 421 RMMRSAYRKFKIRGLVKGQQSIHRSSSSGLGSVVGKPDDFSAMHEIVFRRYRRLLEEGGP 480 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 PD+I+IDGGKGQL+ + EL +S + + +G+ K E L + Sbjct: 481 FPDLIVIDGGKGQLSASYAALEELGLS----NLIAVGLVKKK------EVLVVRDRPDPI 530 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 +LP + AL ++Q IRDE+H A+ HR+ R S+L++I GVG +RR++LL G Sbjct: 531 TLPSANEALLLLQRIRDEAHRCAVTFHRRTRTARHLRSALDSIPGVGLQRRRILLTRFGS 590 Query: 579 LQGLRNASVEEIAKVPG 595 + G+R AS EE+ V G Sbjct: 591 VAGVRRASREELMTVVG 607 >UniRef50_Q3M542 UvrABC system protein C n=11 Tax=Cyanobacteria RepID=UVRC_ANAVT Length = 627 Score = 350 bits (899), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 212/617 (34%), Positives = 346/617 (56%), Gaps = 34/617 (5%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ-IQQI 66 +A L + +PGVY M D +IY+GK++ L+ R+ SYFR + A +A+ + +I Sbjct: 18 EARLSEIPPEPGVYFMRDGSDRIIYIGKSRKLRSRVRSYFREGYNKTERIATMAKLVTEI 77 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK--H 123 + VT TE EAL LE N IK +QP +NVLL+DDK YP++ ++ + +PR+ + R + Sbjct: 78 EFIVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRQLGK 137 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K +Y+GP+ + +RE L + ++IF +RQ ++++R PCL Y +GRC G C + L+ Sbjct: 138 EKDKYYGPYTDSGLLREILRISKRIFALRQRPQPLFKDR--PCLNYDLGRCPGVC-QQLI 194 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S EEY + V+ V + G+ +++ L +ME A++ L FE AARIRDQI ++ +T +Q Sbjct: 195 SPEEYRKTVQKVAMVFQGRTQELIDILSEQMEKAAEALNFEVAARIRDQIAGLKSLTAEQ 254 Query: 244 FVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 VS D + D I +A DA AC+ + IR G+++G ++ + E +++ + Sbjct: 255 KVSLPDDTVSRDAIALAADAQHACIQLFQIRAGQLVGRLAFVAE--SHAEPGAILQRVLE 312 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 + Y Q ++ +P EIL+ L D +LAD L++ GRK+ + T R +A +++ N Sbjct: 313 EHY-QTAESVEIPAEILVQHELPDAEILADVLTQRKGRKVTIFTPQRQVKAELIEMVERN 371 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGP 420 A L HQ LA++L LP++ R+E +DISH G VAS VVF P Sbjct: 372 AQYELQRMQKLGDRNHQATQDLAAILDLPDLPHRIEGYDISHIQGSNAVASQVVFIDGLP 431 Query: 421 LRAEYRRYNITG----ITPGDDYAAMNQVLRRRYGKAIDDSKI--------PDVILIDGG 468 + YR Y I I DD+A++ +V++RR+ K +D ++ PD+I+IDGG Sbjct: 432 AKQNYRHYKIKNPTVTIGHSDDFASLAEVIQRRFRKYAEDPQLSRVGNPDWPDLIMIDGG 491 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL+ V E+++ D L V A R+ E +F E + + P + Sbjct: 492 KGQLSSVVAVLQEMNLLED------LRVISLAKRR---EEIFLPGESQPLKTDAEQPGVQ 542 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 +++ +RDE+H A+ HR++R+ S L+ I G+G R++ LL + + +R A+ Sbjct: 543 LLRRLRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLAHFRSVDYIRQATPA 602 Query: 589 EIAKVPGISQGLAEKIF 605 +IA+VPGI LA+ I+ Sbjct: 603 QIAEVPGIGPHLAQAIY 619 >UniRef50_UPI000050F72E excinuclease ABC subunit C n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F72E Length = 619 Score = 348 bits (892), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 225/633 (35%), Positives = 342/633 (54%), Gaps = 41/633 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS--RKTEA 58 M+D + ++ + GVY+ D VIYVGKAK+L+ RL+SYF SN A +T Sbjct: 1 MADPASYRPATGSIPTSAGVYKFRDPDRRVIYVGKAKNLRNRLNSYF-SNPAQLHPRTST 59 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V ++ TV TE EAL LE +I + PR+NV+ RDDKSYP++ ++ D PR + Sbjct: 60 MVHTAASVEWTVVDTEVEALQLEWTWINEFNPRFNVMFRDDKSYPYLAITMNDEVPRAFI 119 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRS-RPCLQYQIGRC 174 RG + +YFGPF +A+++TL LL + FP+R C VYR RS RPCL I +C Sbjct: 120 TRGKRRKGVKYFGPFAQVWAIKDTLDLLLRAFPMRTCTAGVYRRAERSGRPCLLGYIDKC 179 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 PCV G +S E + + F+SG + ++ M +A++ L++E AAR+RD+I Sbjct: 180 AAPCV-GQISVEGHKDLARSISDFMSGNTGRFISYRQKEMASAAEELDYERAARLRDEIT 238 Query: 235 AVRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 A+++V +K V + D DV + + A V V +RQG++ G R + + + Sbjct: 239 ALQKVLDKSAVVLSVNADCDVFALVTEELEASVQVFHVRQGRIRGQRGWIIERSDDHSPA 298 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 E+ ++ Q Y G +P EIL+D +D L LSE G ++ V+ RG++ Sbjct: 299 ELTTDYLRQAY-TGLDADAIPREILVDTVPADIESLESWLSEQRGSRVTVRVPERGEKKA 357 Query: 354 YLKLARTNAATALTS-KLSQQSTVHQRLTALASV---LKLPEVK-RMECFDISHTMGEQT 408 L+ NA AL KL + S + R TAL + L LPE R+EC DISHT G Sbjct: 358 VLETVAKNAKEALLQHKLKRSSDLTTRSTALKEIQEYLSLPEAPLRIECIDISHTQGSNV 417 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-------DSKI-- 459 VAS VVF+ + +YR + I G DD A+M V+ RR+ + ++ D + Sbjct: 418 VASLVVFEDGLVKKRDYRHFAIHGEAATDDTASMYDVVSRRFSRYLEQMSSDEPDERFGY 477 Query: 460 -PDVILIDGGKGQLAQAKNVFAEL---DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG 515 P ++++DG Q+A A +L D+S ++G+AK LE ++ + Sbjct: 478 RPSLLVVDGAGPQVAAATRALHDLGIVDIS-------VVGLAKR------LEEVWVPEDP 524 Query: 516 EGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKY 575 LP +S L ++Q +RDE+H AI HR KRAK +S L+ I G+G +R LL++ Sbjct: 525 FPVILPRNSEGLFLMQRLRDEAHRFAISYHRSKRAKAMTSSVLDDISGLGESKRTALLRH 584 Query: 576 MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G ++ +R AS+EE+ +V GI Q LAEK+ +L Sbjct: 585 FGSVKKVRAASIEELCEVKGIGQALAEKVAAAL 617 >UniRef50_UPI00017881F9 excinuclease ABC, C subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017881F9 Length = 667 Score = 347 bits (890), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 229/661 (34%), Positives = 349/661 (52%), Gaps = 81/661 (12%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + QPG Y M + GT+IYVGKAK LK R+ SYF + + KT+ LV++I+ + V Sbjct: 22 LALLPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEIRDFEYIV 80 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T + EAL+LE N IK +QPR+NVLL+DDK+YP++ ++ + HPRL + R K +YFG Sbjct: 81 TGSNMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEEHPRLEVTRRVLKDKAKYFG 140 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+PN YA ++T LL +++P+R+C V CL Y +G+CL PCV+ V + Y Q Sbjct: 141 PYPNAYAAQQTKKLLDRMYPLRKC--GVMPKEV--CLYYHMGQCLAPCVKE-VPKSAYEQ 195 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 + FLSG +++ +L +M+ A+++L FE A +RDQI + + EKQ ++ T Sbjct: 196 ITGEITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDT 255 Query: 251 -DLDVIGVAFDAGMACVHVLFIRQGKVLG-SRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D DV G A D G CV +L++RQGK++ ++S FP G S+ + +F+ Q+Y Sbjct: 256 RDRDVFGYAVDKGWMCVQILYMRQGKMVQRNKSVFPFY--GDAHSDFM-SFIAQYYSDNP 312 Query: 309 ---QMRTLPGEILLD--------------------------------------------- 320 Q LPG +L + Sbjct: 313 ALPQEILLPGPLLAEEAGSETATGSAGEQGARNAGEAAETEKKLTTDISEEQHEVLVQAQ 372 Query: 321 ------FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQS 374 L D A +L E G K++V RG + + + +A NA +L K Sbjct: 373 AEQAEAAGLVDAAGGAAALQEWLGVKVHVPQ--RGLKKQMVGMASDNAKVSLDEKFRLIE 430 Query: 375 TVHQRLTA----LASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI 430 +R + L V+ L + R+E FD S+ G V++ VVF P + EYR+Y I Sbjct: 431 RDEERTSVAAANLGEVIGLQSLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKKEYRKYKI 490 Query: 431 TGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA-ELDVSWDK 488 + DDY M +V+RRRY + + ++ +PD+I++DGGKGQ++ A +V EL + Sbjct: 491 RTVQGPDDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGLFVP- 549 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 + G+ K A K L E SLP DS +++Q I+DE H AI HR++ Sbjct: 550 ----VCGLVKDAKHKTA--QLMVGDPPEPVSLPRDSQEFYLLQRIQDEVHRFAISFHREQ 603 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 R K TS L++I G+G KRR+MLLK+ G ++ ++ ASVE+ + I + LA I +L Sbjct: 604 RGKSMVTSKLDSIPGIGEKRRKMLLKHFGSVKKIKEASVEDFKPL-SIGEKLATDILNAL 662 Query: 609 K 609 + Sbjct: 663 R 663 >UniRef50_Q1MQH2 UvrABC system protein C n=3 Tax=Desulfovibrionaceae RepID=UVRC_LAWIP Length = 621 Score = 344 bits (883), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 219/627 (34%), Positives = 342/627 (54%), Gaps = 54/627 (8%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVTVT 71 ++ + PGVY D+ G +IYVGKA++L+KR+ SYFR L + KT+A++ ++ T Sbjct: 8 SIPTTPGVYLYKDSQGRIIYVGKARNLRKRVLSYFRDGLVITPKTKAMMNHANLLETIST 67 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYP-FIFLSGDTHPRLAMHRGAKHAKGEYFG 130 +TE EALLLE + IK ++PRYN++LRDDK Y F G PRL + R + YFG Sbjct: 68 NTEKEALLLEASLIKKHRPRYNIVLRDDKQYLLFRIQKGIPFPRLEIVRQSYKDNAVYFG 127 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PF +G +VR+T + KIFP+R+C + V+ NR RPCL + + +CL PC E V ++YA Sbjct: 128 PFTSGTSVRDTWKFIHKIFPLRRCSDKVFNNRIRPCLYFYLQQCLAPCTEE-VDPKDYAV 186 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTG 249 ++ V LFLSGK +++ L M AS+ LEFE+AA +RDQIQA++ E+Q V G Sbjct: 187 LIQKVELFLSGKSKELVELLQKDMLYASEALEFEKAATLRDQIQAIKHTIERQSVVLPEG 246 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS---EVVETFVGQFYLQ 306 D+DVIG+A + LF+R+GK+L R++F G EL E++ +F+ QFY Sbjct: 247 GDMDVIGIAVVNNGLALGFLFVREGKLLDGRTFFWP---GLELDDGPELLGSFLSQFY-- 301 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSE------------LAGRKINVQTKPRGDRARY 354 S + ++P I++ + L + T D +SE + + ++ + Sbjct: 302 -SPISSIPPRIIVPW-LPESTNNKDEISEDTFETLKYVLEDIRNSTVRIEVPKNIIESNL 359 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCV 413 + +A TNA A+ +KL + + LA V + + R+EC D+SH G T V Sbjct: 360 VDIAVTNAREAVQTKLGEPMS-----AKLAKVFHTDKPIFRIECVDVSHISGTNTRVGMV 414 Query: 414 VFDANGPLRAEYRRYNIT----GITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGK 469 VF+ + PL+ +YR Y+ T GDDYAA+ +RR D++LIDGGK Sbjct: 415 VFEDSQPLKNDYRIYSTTEDNSPFIKGDDYAALASWAKRRIQSG---PPWADLVLIDGGK 471 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKG------ADRKAGL--ETLFFEPEGEGFSLP 521 GQ+ + VF E + K+ +L G+AK DR+AG + +F +L Sbjct: 472 GQINAVQRVFNEHHL---KDVFILAGIAKARNEEGRVDRRAGNIGDKIFVVGRMNPLTLK 528 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 SP L +Q++RD +H+ +G HRK R L I G+G ++L + ++ Sbjct: 529 EGSPELLFLQYVRDTAHNFVLGKHRKARKNTALLGELLRIPGIGQATAKLLWSHFKTVEA 588 Query: 582 LRNASVEEIAKVPGISQG----LAEKI 604 + A+++++ +PGI + LAE++ Sbjct: 589 MTCATIKDLEAIPGIGEAKARMLAERL 615 >UniRef50_Q04EZ7 UvrABC system protein C n=42 Tax=Lactobacillales RepID=UVRC_OENOB Length = 607 Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 210/600 (35%), Positives = 325/600 (54%), Gaps = 36/600 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + SQPG Y+M D G +IYVGKAK+LK R+ SYF++ + KT LVA I + V Sbjct: 10 LALLPSQPGSYQMKDKNGKIIYVGKAKNLKNRVRSYFKAE-HTGKTAELVANIHDFEFIV 68 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T+++ EA LLE+ IK Y+P +N+ L+ SYP+I ++ + PRL + KH G YFG Sbjct: 69 TNSDKEAFLLENTLIKRYRPYFNIRLKFSGSYPYIEITNERDPRLILANTLKHDHGTYFG 128 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+PN YA ETL L+ +P+R+C + RPCL Y +G+CLG C V +EEY + Sbjct: 129 PYPNVYAASETLHFLEMTYPLRRCNGY----QGRPCLYYSMGQCLGACWRT-VPQEEYQK 183 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-SNTG 249 ++ + FL+G+ + ++ + +M+ AS + E+E AA RD+++ + + E Q V N Sbjct: 184 NIDAITRFLNGETGKAISDIKKKMKRASDSTEYELAADFRDRLKFIDQTVESQRVLQNDH 243 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 D+ D G + + F+RQG++L R + + E +E+++ QFY Q + Sbjct: 244 TPRDLFNFYMDKGWMTIEIFFLRQGRLL--RQQKETLALADSVKEELESYIQQFYSQKNA 301 Query: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 + P E+L+ N+ D LLA++L +I V+T RG++ LKLA NA L K Sbjct: 302 QK--PKEVLVPKNV-DTKLLAETL------EIPVRTPVRGEKRDLLKLAAKNARITLEDK 352 Query: 370 LSQQSTVHQRLTA----LASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 ++ T + LK+P R E FD S+T G V++ VVF+ P + Y Sbjct: 353 FRLMELNEEKTTGAMKEITDALKIPHGYRFEAFDHSNTQGSNYVSALVVFEDGLPNKNLY 412 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFAELDV 484 RRY + T D+ A +V+ RRY + D+ ++ PD+IL+DGG+ QL A+ +LD+ Sbjct: 413 RRYKLRTPTGQDEAKATFEVITRRYTRLRDEGQMYPDLILMDGGEIQLHSAEAALRKLDI 472 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 P+ V + A L GE L P S +++Q I+DE H I Sbjct: 473 DI----PVAAMVKNDKHQTADL----LNSRGENLFLDPHSQGFYLLQRIQDEVHRFVITF 524 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 HR+ R K +S L+ I G+GPK R L++ G L + +AS+E+I + G+ EK+ Sbjct: 525 HRQLRTKTNLSSRLDEIAGIGPKSRVKLMRRFGSLPKIADASIEDIEAL-----GIGEKV 579 >UniRef50_A0QWV6 UvrABC system protein C n=27 Tax=Actinomycetales RepID=UVRC_MYCS2 Length = 706 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 232/656 (35%), Positives = 350/656 (53%), Gaps = 64/656 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--SNLASRKTEA 58 M D + ++ +PGVYR D G VIYVGKAK L+ RL+SYF ++LA R T Sbjct: 1 MPDPATYRPAPGSIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADITSLAPR-TRQ 59 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V ++ TV TE EAL LE+N+IK + PR+NV RDDKSYP + ++ + +PRL + Sbjct: 60 MVMTAGSVEWTVVTTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLMV 119 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRC 174 +RG + YFGP+ + +A+RETL LL ++FP R C V++ RPCL I +C Sbjct: 120 YRGPRRKGVRYFGPYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKC 179 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 PCV G VS E++ Q V FL GK D++ + +M A++ L+FE AAR+RD I Sbjct: 180 SAPCV-GRVSAEQHRQIVLDFCDFLGGKTDRLAKDMEQQMTAAAEQLDFERAARLRDDIS 238 Query: 235 AVRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV------LGSRSYFPKVP 287 A++R EKQ V G D DV+ A D A V V +R G+V + +S P Sbjct: 239 ALKRALEKQAVVFGDGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSSEPAAT 298 Query: 288 GGTEL-----SEVVETFVGQFYLQGSQM------------RTLPGEILLDFNLSDKTLLA 330 G +L ++VE F+ QFY + +++ +P ++L+ + LA Sbjct: 299 GDADLGQSGQEQLVEQFLTQFYGEQAELGSASDTGGDEATNPVPRQVLVPVLPPNADELA 358 Query: 331 DSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS-KLSQQSTVHQRLTALASV--- 386 LS L G +++++ RGD+ + + NA AL KL + + R AL S+ Sbjct: 359 TWLSGLRGSRVSLRVPVRGDKRALAETVQRNAQEALAQHKLKRAGDFNARSEALQSIQEA 418 Query: 387 LKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI---TGITPGDDYAAM 442 L L + R+EC DISH G VAS VVF+ P +++YR Y I G DD A++ Sbjct: 419 LGLADAPLRIECVDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASI 478 Query: 443 NQVLRRRYGKAIDDSKI--------------PDVILIDGGKGQLAQAKNVFAELDVSWDK 488 +V RRR+ + DS+ P++ ++DGG Q+ A V +L V Sbjct: 479 AEVTRRRFLRHTSDSQPDPSAEQRPRRFAYPPNLFVVDGGAPQVNAAAAVLEDLGV---- 534 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 + ++G+AK LE ++ E + LP +S L+++Q +RDE+H AI HR K Sbjct: 535 DDVAVIGLAKR------LEEVWVPSEPDPVILPRNSEGLYLLQRVRDEAHRFAISYHRSK 588 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 R+K S+L+++ G+G RR+ L+ + G + L+ A+V+EI VPGI A + Sbjct: 589 RSKRMTASALDSVRGLGEHRRKALVAHFGSVARLKEATVDEITAVPGIGVATARAV 644 >UniRef50_C7RHW1 Excinuclease ABC, C subunit n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHW1_ANAPD Length = 616 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 206/619 (33%), Positives = 329/619 (53%), Gaps = 37/619 (5%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQI 66 K LK + PGVY M +A +IYVGKA LK+R+ YF +N K A+V I Sbjct: 7 KEKLKELPDLPGVYIMRNAEDEIIYVGKAISLKRRVRQYFDNNKNKGAKVLAMVKNIDHF 66 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + + E EAL+LE N IK +PRYN++LRDDK YP+I + + +PR+ R G Sbjct: 67 EYIIVQNEVEALVLESNLIKKNRPRYNIVLRDDKQYPYIKICKEKYPRIKKVRQVLKDGG 126 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGLVS 184 YFGPFP+ YAV + + L +P R C + + RPCL Y I +C GPCV+ Sbjct: 127 RYFGPFPDAYAVNDAIDLFHLYYPFRTCNLNFDKGARLDRPCLNYFIHKCKGPCVDK-ED 185 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E+ Y ++ V FL K +++ ++++M AS++L FE AA+ RD +A+ ++E+Q Sbjct: 186 EKRYLNHIDDVVKFLENKSEKIPNWVLAKMNDASKDLNFEMAAKYRDYYRALSVISERQN 245 Query: 245 VSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V+ T GDDLD+I ++ + V F+R GK++ + K S+++ +F+ QF Sbjct: 246 VTETGGDDLDIIAMSKGMNSIIIQVFFMRMGKIVDREHFIIKNDFMETDSDIMSSFIKQF 305 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 YL + +P EIL+ + +D +++ LS K+ + G + + +A N Sbjct: 306 YL---DIMYVPKEILVQYMPADFDSISEFLSRKKKSKVYIHNPKLGKKKELVDMASRN-- 360 Query: 364 TALTSKLSQQSTVHQR-------LTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 AL ++ V ++ + L +L L +V R+EC+DIS+T G +V S VVF+ Sbjct: 361 -ALDMRIKYDKRVERKERKKSSGINQLMDILNLKDVFRVECYDISNTSGVLSVGSMVVFE 419 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------IPDVILID 466 P EYR++ I + DDYA+ +VL RR + +++ + +PD+IL+D Sbjct: 420 GGIPTPKEYRKFKIKTVVGSDDYASHREVLTRRLKRGLEEKEKGNTQTGFGSLPDLILMD 479 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQ+ AK V L +S + + G+ K D K + + E ++ P Sbjct: 480 GGKGQVTIAKEVIDGLGLSIE-----VAGLVK--DDKHTTRAIVY--NNEEIAINRRDPV 530 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 +I I++E+H AI HRK T+ L+ I+GVG K R+ L K+ + ++ AS Sbjct: 531 YKLIYEIQEEAHRFAINYHRKLMQNTMKTTELDNIKGVGEKTRKNLYKHFKTISNIKKAS 590 Query: 587 VEEIAKVPGISQGLAEKIF 605 VEE+ +VP + + A +I+ Sbjct: 591 VEELMEVPLVGKVQALEIY 609 >UniRef50_Q01S04 UvrABC system protein C n=2 Tax=Acidobacteria RepID=UVRC_SOLUE Length = 623 Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 214/586 (36%), Positives = 323/586 (55%), Gaps = 23/586 (3%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQIDVTVTHTETE 76 PGVY D+GG VIYVGKAK L+ R+ SYF + L KT L+ + ID + E E Sbjct: 14 PGVYLYKDSGGKVIYVGKAKSLRNRVRSYFSEDKLGDIKTGTLITEACDIDYILVDNEKE 73 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGY 136 AL LE+N IK Y+PR+N+LLRDDK+YP++ ++ + +PR+ + R + +YFGPF Sbjct: 74 ALALENNLIKQYKPRFNILLRDDKTYPYVKVTNEKYPRVYVTRRLRKDGAQYFGPFFPAN 133 Query: 137 AVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVR 196 + + + F + C+ + R +PCLQ+ I RCLGPCV+GL ++E YA V VR Sbjct: 134 LAHRLVHFIHRHFQVPSCKVDLTRFHPKPCLQFHIHRCLGPCVQGLTTDEAYAAAVRDVR 193 Query: 197 LFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTGDDLDVI 255 LFL G+ + L +RME AS + FEEAA +RD I V + E+Q + GDD+D+ Sbjct: 194 LFLDGRHSDLARGLRARMEAASLEMRFEEAAGLRDLITTVEEIEERQKMAAAKGDDVDIF 253 Query: 256 GVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPG 315 V + + +++ +R G+++ R F + + S + + + Q YL + +P Sbjct: 254 AVYAEPPLVALNIFHLRNGQIVDRRELFWEDQFEYDESLFLSSLLKQIYL---DQQFVPA 310 Query: 316 EILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK---LSQ 372 EI + D L + L+E R++ ++T RG + L L TNA + ++ L Sbjct: 311 EIHVPVEFEDLEALEELLTEKRQRRVEIRTPQRGQKKALLGLVETNAKHSFDARFRVLKP 370 Query: 373 QSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIT 431 S Q AL L LP+ R+ECFDISH G VAS VV++ +++YR++ I Sbjct: 371 SSRAIQE--ALQDALNLPDAPSRIECFDISHIQGTDKVASMVVWEDGKMKKSDYRKFIIR 428 Query: 432 GITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNH 490 + DD+A+M +V+ RRY + ++ + +P ++LIDGG GQL A + ++ + Sbjct: 429 TVVGNDDFASMREVVTRRYSRLQEEKQPMPGLVLIDGGLGQLHAAAEALEAIGIA---DQ 485 Query: 491 PLLLGVAKGADRKAGLETLF-FEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 PL A A R+ E ++ F E E L SP LH++Q IRDE+H A+ HR R Sbjct: 486 PL----ASIAKRE---EIIYVFGQEDEPVVLDRFSPILHLVQSIRDEAHRFAVTFHRSLR 538 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 + TS L+ I GVG K Q LLK G L+ +R A+ ++A V G Sbjct: 539 NTRQLTSELDAIRGVGAKTVQKLLKEFGSLERVRAATETQLATVVG 584 >UniRef50_A4XIQ3 UvrABC system protein C n=2 Tax=Clostridia RepID=UVRC_CALS8 Length = 593 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 206/598 (34%), Positives = 334/598 (55%), Gaps = 22/598 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + + PGVY M D G VIYVGKA +L+ R+ YF+++ + KT +V +I+ + V Sbjct: 8 LANLPTTPGVYMMKDENGKVIYVGKAVNLRNRVRQYFQNSDMTPKTRLMVKKIKDFEYIV 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T TE EAL+LE N IK Y+P+YNVLLRDDK+Y +I ++ + PRL R + +YFG Sbjct: 68 TDTEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITNEMFPRLVTTRKVEKDGAKYFG 127 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSV--YRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 P+ +GY+V++T+ LL+ +F +R C+ + RPCL + I RCLG C +G + EEEY Sbjct: 128 PYVSGYSVKQTIELLKSLFMLRTCKRKFPDQLGKGRPCLNFYIERCLGVC-KGDIPEEEY 186 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 + VE LSGK D+++ +L +M + NL FE+A I+++I ++ ++ KQ V Sbjct: 187 QKLVEKAVKVLSGKGDEIVEELKKKMFEYADNLMFEKAQEIKNKITSLEQIITKQKVIYA 246 Query: 249 GD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D DVI A D+ C+ VL IR GK++ + K EV E F+ Q+Y Sbjct: 247 DDRSEDVINYAEDSSNICIVVLVIRNGKLINKEEFVLKND-----EEVFERFLEQYY--- 298 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 S + ++P EI+L + + + + +L G K + +G++ + L++A+ NA +L Sbjct: 299 SDVVSVPKEIILPHEVGNGENIEKMIEKLYGFKAKIVVPKQGEKKQLLEMAKKNAEISLV 358 Query: 368 SKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 +K ++ + L L ++L + +++++E +DIS+ G V + VVF+ + YR Sbjct: 359 NKQRIENYYIEALLHLKNLLGIEHDIEKIESYDISNLAGADNVGTLVVFEDGKFNKDLYR 418 Query: 427 RYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 ++ + DD ++ +VL RR+ ++PD+ILIDGG+ Q+ A V L Sbjct: 419 KFKLKSFEGQDDIRSVKEVLTRRFTNLEKHGRLPDLILIDGGQNQVNAAVEVLRSLGF-- 476 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 N P + G+ K DR + ++ +G+ ++ DS +I I++E+H A+ HR Sbjct: 477 --NIP-VAGMVKD-DRHKTRDLIY---KGQELNIQRDSLVFKLISTIQEETHRFAVKYHR 529 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 + R K S L+ IEG+G KR+ L + G + LR AS+EEI K I +A KI Sbjct: 530 ELRKKHLYESILDEIEGIGEKRKIKLFRIFGSIDNLRKASIEEIVKAADIPYDIALKI 587 >UniRef50_B0VH58 Excinuclease ABC, C subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH58_9BACT Length = 601 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 203/614 (33%), Positives = 342/614 (55%), Gaps = 31/614 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 S++ + K L + QPGVY D GT+IY+GKA +LK R+ +Y KTE L+ Sbjct: 4 FSEEIETK--LALLPEQPGVYLWKDKDGTIIYIGKALNLKHRIKNYLNPAGKDLKTEHLI 61 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 I +D +T++E +A +LE +K Y+P+YN++L+DDK YPF+ ++ + PR+ + R Sbjct: 62 KNIADLDYIITNSEADAFILEATLVKRYRPKYNIMLKDDKRYPFVKITVNEPFPRIFITR 121 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPC 178 +YFGP+ +R TL L+ IFP+R C ++ + + +PC+ +Q+G+C PC Sbjct: 122 ELLKDNAKYFGPYTEVRYLRNTLRDLEWIFPLRSCNRNIPKIKYKQPCMNFQLGKCPAPC 181 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 + G +S++ YA+ V + F +G+ ++L +L + M+ AS L FEEA + RD+I A+ R Sbjct: 182 I-GNISQKNYAKTVNQLLRFFNGRYTELLDELRTEMQNASAELRFEEAGKFRDRIIAIER 240 Query: 239 VTEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + ++Q V N G ++D+IG + A +L ++ G ++ +Y E ++ Sbjct: 241 IQKRQSVFNVEGGNIDIIGFYREEKRAVCVILKMKNGAIIHQENYPLTNLDYEEPDSILA 300 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 +F+ +Y +M P E+LL F D D L+ G K+ Q RG++ + + + Sbjct: 301 SFLQLYYADREEM---PEEVLLPFAPKD----MDKLNSWLGNKL--QIPQRGEKTKLIAM 351 Query: 358 ARTNAATAL-TSKLSQQSTVHQRL---TALASVLKLPEVKR-MECFDISHTMGEQTVASC 412 A+TNA + SKL+ ++ + L LKLP++ R + C DIS G TV+S Sbjct: 352 AKTNAFNIVEESKLAHLRKANRTIFPVQELKEALKLPKLPRKIVCMDISTIQGSDTVSSA 411 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQ 471 V F+ + YR + I I +DYAAM + + R + + ++ PD+I+IDGGKGQ Sbjct: 412 VFFENGKSKKKYYRHFIIRSIETQNDYAAMQETMARFLTETEKEPQMKPDLIVIDGGKGQ 471 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L+ ++ + + KN ++ +AK A E +F + LP S AL ++ Sbjct: 472 LSASEQILR----ASGKNDISIIALAKRA------EEVFVPGNEQSIILPRSSSALRLLI 521 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +IRDE+H A+ HRK+R++ S LE+I G+G K + +LLK +G ++ + NA+ E ++ Sbjct: 522 NIRDEAHRFALSLHRKRRSRRTLESELESISGIGEKNKFLLLKELGSVENIANANRETLS 581 Query: 592 KVPGISQGLAEKIF 605 K+ GI +AEKI+ Sbjct: 582 KIKGIGPKIAEKIY 595 >UniRef50_C0ZZE8 UvrABC system protein C n=14 Tax=Actinomycetales RepID=UVRC_RHOE4 Length = 730 Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 233/676 (34%), Positives = 357/676 (52%), Gaps = 79/676 (11%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D + T+ + PGVY+ D G VIYVGKAK L+ RL+SYF +T + Sbjct: 1 MPDPSTYRPATGTIPAAPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVTTLHPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+N+IK + PR+NV RDDK+YP + ++ + PRL ++ Sbjct: 61 VTTAGSVEWTVVSTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLFVY 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL LL ++FP R C + V++ + RPCL I +C Sbjct: 121 RGPRRKGVRYFGPYSHAWAIRETLDLLLRVFPARTCSSGVFKRHNQIGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS EE+ Q VE FL+G+ D+++ L RM+ AS++L+FE AAR+RD I A Sbjct: 181 APCV-GRVSAEEHRQIVEDFCDFLAGRTDKLVKDLEKRMQQASEDLDFETAARLRDDIGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG----- 289 +R+ EKQ V G D D++ A D A V V +R G+V G R + + G Sbjct: 240 LRKALEKQAVVLGDGTDADLVAFATDDLEAAVQVFHVRGGRVRGQRGWVVEKAGDAIDWA 299 Query: 290 -----TELSEVVETFVGQFYLQ--------GSQ--MRTLPGEILLDFNLSDKTLLADSLS 334 ++L +VE F+ QFY + GS+ + +P E+L+ ++ T + LS Sbjct: 300 ALDAESDLPILVEQFLTQFYGEQAALDPGAGSEAGISAVPKEVLVPVLPANATEIQAWLS 359 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTS-KLSQQSTVHQRLTALASVLKLPEVK 393 +L G ++ ++ RGD+ + + NA AL KL + R AL + + ++ Sbjct: 360 KLRGSQVQLRVPQRGDKKDLAETVQRNAKEALAQHKLKRAGDFTSRSAALQGIQEALDLD 419 Query: 394 ----RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI---TGITPGDDYAAMNQVL 446 R+EC DISH G VAS VVF+ P +++YR Y I G DD A++ ++ Sbjct: 420 SAPLRIECIDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGHSDDVASIAEIT 479 Query: 447 RRRYGK--------------------------AIDDSK--------IPDVILIDGGKGQL 472 RRR+ + AID + P++ ++DGG Q+ Sbjct: 480 RRRFIRHNRDLGILAASASTMDADGGDLAPEAAIDPATGRPRRFAYPPNLFVVDGGAPQV 539 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A V EL V+ ++G+AK LE ++ E + LP S +L+++Q Sbjct: 540 TAAAAVLDELGVT----DVAVVGLAK------RLEEVWVPGEEDPVILPRTSESLYLLQR 589 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H AI HR KR++ S+L++++G+G RR L+ + G + L+ A+VEEI + Sbjct: 590 IRDEAHRFAITFHRSKRSRRMTASALDSVKGLGETRRTALVAHFGSVAKLKTATVEEIMQ 649 Query: 593 VPGISQGLAEKIFWSL 608 VPGI + A + +L Sbjct: 650 VPGIGETTATAVLAAL 665 >UniRef50_B9M422 UvrABC system protein C n=8 Tax=Desulfuromonadales RepID=UVRC_GEOSF Length = 622 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 222/608 (36%), Positives = 332/608 (54%), Gaps = 26/608 (4%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVTVTHTE 74 S PGVY M DA TV+YVGKA+DL+KR+ SYF ++ SR + L+A++ I VT TE Sbjct: 12 SSPGVYIMKDAEATVLYVGKARDLRKRIRSYFAASGDSRYQIRFLMARVTDIQFIVTDTE 71 Query: 75 TEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHAKGEYFGPFP 133 EAL+LE+ IK Y+P+YN LRDDK+Y + + + PRL++ R YFGP+ Sbjct: 72 KEALILENTLIKKYRPKYNFNLRDDKTYFSLRMDMSSDFPRLSIIRKVTRDGARYFGPYS 131 Query: 134 NGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVE 193 + R L L K+FP+R R R+RPCL YQ+ +C PC G +S E+Y E Sbjct: 132 SASDARAVLKHLYKLFPLRHYPMETCRRRNRPCLFYQLKQCSAPC-HGKISREDYMALAE 190 Query: 194 YVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLD 253 LFL GK+ ++L RM A+ ++E+AAR RD I+++ EKQ V G D D Sbjct: 191 GAALFLEGKNREILKIFRERMSAAAAAEKYEKAARFRDLIRSIEVTVEKQKVVAQGGDSD 250 Query: 254 VIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTL 313 VIG + + +LF+R G + GSR+Y + E + +F+ ++Y +Q + Sbjct: 251 VIGFYREGEQLHIALLFLRGGTLTGSRNY--SFSWEMDDHEGIASFLNEYY---NQEVFI 305 Query: 314 PGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ 373 P EI+L ++D + L EL GR++++ RG++ ++LA NA TA + Sbjct: 306 PSEIVLPIAIADPLPQEELLCELRGRRVSITVPQRGNKLELVRLAIKNAETAAAERKKAA 365 Query: 374 STVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG 432 + L L L L ++ +R+EC+DIS+ G+ V S V F +A YRRY I G Sbjct: 366 ESGEAILQTLKERLHLHKLPRRIECYDISNIQGQMAVGSKVAFVDGKADKAHYRRYRIKG 425 Query: 433 ITPGDDYAAMNQVLRRRY--GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH 490 ++ DD+A M ++ RR+ G A DD PD+I++DGG GQL +V +L ++ + Sbjct: 426 VSQSDDFAMMREMFSRRFKPGTAPDD--YPDLIIVDGGIGQLNVLTHVLGDLQITDVEA- 482 Query: 491 PLLLGVAKG-ADRKAGL-------ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 G+AK DR+ G E +F L +S L ++ IRDE+H A+ Sbjct: 483 ---AGLAKSRVDREMGATEISRSDERVFLPNRKNPVVLRQNSAPLLLLARIRDEAHRFAV 539 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 H+K R S LE I G+G KRR+ LL++ G L+ + A++EE+ +V GIS +AE Sbjct: 540 AYHKKLRGNKLLASQLEAIPGIGIKRRKELLRHFGSLKKISEATLEELRQVQGISATVAE 599 Query: 603 KIFWSLKH 610 + W H Sbjct: 600 SL-WKHLH 606 >UniRef50_C4FUE0 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUE0_9FIRM Length = 604 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 209/608 (34%), Positives = 332/608 (54%), Gaps = 32/608 (5%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 +A LK + PG Y M DA ++YVGKAK+LK R+ SYFR + KT LV++I + Sbjct: 20 EAKLKLLPDLPGCYLMKDAADQILYVGKAKNLKNRVRSYFRGAHDT-KTTKLVSEIDHFE 78 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 + +T++ EALLLE N I+ Y+P +N+ L++ YP++ ++ + HP+L + G Sbjct: 79 IIITNSNKEALLLEINLIQQYKPPFNIRLKEGTMYPYLKITKERHPQLIITSNVTKDGGL 138 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGPFPN A +T LL +++P+R+C +N R C Y +G+C+GPC + V+++ Sbjct: 139 YFGPFPNVGAATQTQQLLHRVYPLRRCG----KNEKRACFYYHLGQCIGPC-DHEVTKDM 193 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-S 246 Y QQ++ ++ F +G ++TQL +M+ A++ L+FE+AA RDQ+Q + E+Q + S Sbjct: 194 YEQQIQKIKQFFNGDIQPIMTQLKDKMQAAAERLDFEQAADYRDQLQYIETTIERQIIMS 253 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 D+ DV F G + V +RQG +L + P T+ E + TF+ +FY + Sbjct: 254 QDYDNTDVFAYDFQRGWISIQVFMLRQGSILKREAAI--YPAYTDPDEELTTFIARFYQE 311 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + + LP IL+ ++ DK LL+ +S I + T RG + L L N+ AL Sbjct: 312 ENHL--LPKAILVPEDV-DKDLLSQVIS------IPISTPQRGKKKSMLDLCAKNSQLAL 362 Query: 367 TSKLSQQSTVHQRLTA----LASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 +L+ Q+ LA+ L +P +E FD S+ G V+ VV+ P R Sbjct: 363 NERLNLLDIQAQQTRGVSEDLAAALGIPLAYHIEAFDHSNISGTGLVSGMVVYKEGKPDR 422 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVF-A 480 YR++ I +++A +V+RRRY + + ++ +P++IL+DGGK Q+ A+ V Sbjct: 423 KSYRKFKIKESNQTNEFAHTQEVIRRRYSRLLREEQPLPNLILMDGGKVQVRAARQVIEK 482 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 EL +S P+ V R A L + E E L SP H IQ I++E H + Sbjct: 483 ELGLSI----PVAGMVKDDKHRTASLMNGYSE---ELVELDRQSPVFHYIQRIQEEVHRY 535 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HR+ R+K + S L+ I GVG R LLK+ L+ ++ AS+E+ AK+ G+ L Sbjct: 536 AISYHRQVRSKQQFASKLDAIPGVGKVTRTKLLKHFKSLKAMKEASIEDYAKL-GVRAEL 594 Query: 601 AEKIFWSL 608 AE+I L Sbjct: 595 AERIIAYL 602 >UniRef50_B5YHU3 Excinuclease ABC, C subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHU3_THEYD Length = 589 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 219/603 (36%), Positives = 328/603 (54%), Gaps = 26/603 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L TV S PGVY D+ G V+YVGKAK+L+ RL SYF+S+ + +V I+ V Sbjct: 4 LNTVPSLPGVYLFKDSKGKVLYVGKAKNLRNRLKSYFQSDDLDPRKSKMVKLIKDFSYIV 63 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T E EAL+LE N IK ++P +NVLLRDDKSYP++ ++ + P++ + R K YF Sbjct: 64 TSNEFEALVLEANLIKQHKPSFNVLLRDDKSYPYLRITVVEEWPKIDVVRKPKKDGNLYF 123 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYR-NRS-RPCLQYQIGRCLGPCVEGLVSEEE 187 GP+ ++ E L+ +++ FPIR C+ YR N+ RPC+QYQ+ RC PC G +S E+ Sbjct: 124 GPYVPAQSMWEALSFIRRNFPIRTCK---YRLNKPIRPCVQYQMKRCPAPCA-GFISRED 179 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV-TEKQFVS 246 Y + V V LFL G+ ++L L +M+ S L+FE AA+IRDQI+ + ++ T+++ VS Sbjct: 180 YMKGVNEVVLFLKGQKTELLNILYEKMQKLSHELKFEAAAKIRDQIRRLEKIFTQQRVVS 239 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 T DD+DVIGV + V+ LF+R G ++GS + K E++ + Y Sbjct: 240 QTLDDMDVIGVYIENSKISVNTLFVRNGLLVGSNDWTVKKAFYESEGELIHAVIEALY-- 297 Query: 307 GSQMRTLPGEILLDFNLSDK-TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 S+ +P I++ NL + T + + L E G + ++T + L +A NA Sbjct: 298 -SKEALIPPPIIVLENLPESLTEIKEWLKEKRGDFVELKTPSLEEEKALLDMALNNAKIH 356 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 L SK+S T + L ++ ++P ++ FD+S G +V S V + + Y Sbjct: 357 LQSKISPLETSLKELKQRLNLSEIPS--KIGAFDVSTLFGSYSVGSFVYWQDGFFDKNLY 414 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 R I I DDY+AM +++ R K + PD+ILIDGG G L A V EL Sbjct: 415 RHLRIKEIQGIDDYSAMKEIVHRVVKKFNAELPEPDLILIDGGLGHLNAAIKVINEL--- 471 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 K + +AK DR L F P+G L P+ +++ IR+E+H AI H Sbjct: 472 --KEKLNVFAIAKDPDR------LIF-PDGRELVLEDKKPSSLLLKKIRNEAHRFAISYH 522 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 +K R K S LE I+G+G KRR LLK+ G + ++ A+VEEIA + G + LA K+ Sbjct: 523 KKLRKKATFESLLEKIQGIGKKRRLTLLKHFGSISKIKAATVEEIASLQGFNLRLAGKVI 582 Query: 606 WSL 608 L Sbjct: 583 EEL 585 >UniRef50_C7MCN8 Excinuclease ABC subunit C n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCN8_BRAFD Length = 650 Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 219/618 (35%), Positives = 341/618 (55%), Gaps = 41/618 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + T+ ++PGVYR D G VIYVGKAK+L++RL +YF+ ++ +T + Sbjct: 1 MADPATYRPATGTIPTRPGVYRFRDEHGRVIYVGKAKNLRQRLVNYFQDLSVLHERTRRM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+ +IK + PR+NV RDDKSYP++ L+ G+ PR+ + Sbjct: 61 VTTAASVEWTVVGTEVEALTLEYTWIKEFDPRFNVKFRDDKSYPYLVLTMGEKVPRVHIT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRS-RPCLQYQIGRCL 175 R + FGP+P A+RETL L+ ++FPIR C VYR RS RPCL IG+C Sbjct: 121 RRPRAKGDRTFGPYPQVGAIRETLDLMLRVFPIRSCTAGVYRRAERSGRPCLLGFIGKCA 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +SEEE+ + E F++G + ++ RM+ A+ +++E AA +RD +QA Sbjct: 181 APCV-GDISEEEHRRLAEQFADFMAGNTSKYTRRIEQRMKAAAAAMDYETAAGLRDDLQA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + +V EK V + D D+IG+A D A V V +R G++ G R + ++ + + Sbjct: 240 LEKVMEKNSVVLSDATDADLIGLAQDELEASVQVFHVRGGRIRGQRGWTAEILDDSSGPD 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 ++E + Y +G P E+L+ +++ + + ++ GR ++++ RG++ Sbjct: 300 LIERAMTTLYAEGEA----PREVLVPILPTNR----EQVLQMMGRTVDLRVPQRGEKKDL 351 Query: 355 LKLARTNAATAL-TSKLSQQSTVHQRLTALASV---LKLPEVK-RMECFDISHTMGEQTV 409 L+ NA AL +L + + R AL + L+L E R+ECFDISH+ G V Sbjct: 352 LRTVGENATEALRLHRLKRTGDLTARTKALEDLGEALELAEPPLRIECFDISHSHGTNVV 411 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------- 458 S VVF+ P ++EYRRY+++G DD A+M V+ RR +D + Sbjct: 412 GSQVVFEDGLPKKSEYRRYSVSGAAARDDTASMYDVISRRLKHHLDPPEQSEEDRRRFAY 471 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 P +IL+DGG Q+A A+ F +L ++ L G+AK LE ++ + Sbjct: 472 PPSLILVDGGPPQVAAAQRAFDDLGIT----DIALAGIAKR------LEEIWLPGDDYPV 521 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 LP S AL ++Q +RDE+H AI HR KR + S+L+ I G+GP RR+ LL Sbjct: 522 ILPRTSEALFLVQRLRDEAHRFAITYHRSKRGRAMQASALDGIPGLGPARRRALLDRFVT 581 Query: 579 LQGLRNASVEEIAKVPGI 596 + +R AS EE+ +V GI Sbjct: 582 VSAIRAASEEELVEVDGI 599 >UniRef50_C1FMJ8 UvrABC system protein C n=14 Tax=Clostridium RepID=UVRC_CLOBJ Length = 618 Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 210/631 (33%), Positives = 331/631 (52%), Gaps = 40/631 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQI 63 FD + LK + +PGVY M + G +IYVGKAK LK R+ YF +S S K +A+V I Sbjct: 2 FDLEYQLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ++ + +T +E EAL+LE N IK Y+P+YN+LL+DDK YPFI ++ + PR+ R Sbjct: 62 EEFEYIITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVT 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS--RPCLQYQIGRCLGPCVE 180 +YFGP+ +G +V++ + L++K FPIR C+ ++ RPCL YQIG C PC + Sbjct: 122 KDGSKYFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQ 181 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + + EY + ++ V LSGK ++ ME A++NLEFE+AA +RD+I + ++ Sbjct: 182 -YIKKSEYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIG 240 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + N D+ D I + D C V F+R GK++G + + T S ++ F Sbjct: 241 EKQKIILNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + +FY +P I + N+ D+ LL L+ K ++ +G++ L L Sbjct: 301 LKEFY---GGTAYIPKTIYVP-NIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVE 356 Query: 360 TNAATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVV 414 NA T L + L +++ L L ++L+L E R+E FDIS+ G +V S VV Sbjct: 357 KNAKTTLENFKLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVV 416 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYG------KAIDDSKI--------- 459 F+ ++YRR+ I + DDY +M ++L RR+ K+I D K+ Sbjct: 417 FEKGRAKPSDYRRFKINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSV 476 Query: 460 -PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 PD+IL+DGGKGQ+ N+ E+ +++ + P+ V R GL GE Sbjct: 477 FPDLILMDGGKGQI----NIALEVLNTFNIDIPVCGMVKDNKHRTRGLIY-----NGEEI 527 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 + + I ++DE H AI HR R K S L+ I +G KR++ LL Sbjct: 528 IINKYGSVMKFITRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKS 587 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + ++ A+ EE+ +P + + AE + K Sbjct: 588 IDNIKKATYEELLSIPSMDKKSAECVLEFFK 618 >UniRef50_Q1D921 UvrABC system protein C n=2 Tax=Cystobacterineae RepID=UVRC_MYXXD Length = 646 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 227/625 (36%), Positives = 344/625 (55%), Gaps = 37/625 (5%) Query: 5 FDAKAF--LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 DAK L + ++PGVY M D G VIYVGKA +L+ R+ SYF +R +L+ Q Sbjct: 1 MDAKLLEKLDALPTEPGVYLMKDRRGQVIYVGKAINLRSRVRSYFNRTGDTRVFVSLLDQ 60 Query: 63 I-QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD---THPRLAMH 118 + ++ + E EALLLE+ IK ++PR+NVLL+DDK FI L D +PRL + Sbjct: 61 LLGDLETVLVSNEKEALLLENELIKKHRPRFNVLLKDDKQ--FISLRLDRTQPYPRLEVV 118 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R + YFGP+ + A+RETL ++ + F +R C + V NR RPCL +QIGRC PC Sbjct: 119 RKYERDGARYFGPYSSAGAIRETLRVVNRFFRLRTCTDHVLANRKRPCLLHQIGRCPAPC 178 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 V V +E+Y + V+ V +FL GK +++ L RM+ A+Q L+FEEAARIRDQ+ A+ R Sbjct: 179 VYP-VPQEDYHRSVDEVVMFLEGKAGELVEGLRLRMKRAAQELKFEEAARIRDQLNAIER 237 Query: 239 VTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL---SE 294 E+Q V+ T D DV + +VL++RQG++ G +++ P G++ E Sbjct: 238 SLERQKVATTDFKDQDVFAFHREGDRILFYVLWVRQGRLNGGQAF----PFGSQEFPDEE 293 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 ++ +FV +Y QGS + L + + L L+E G ++ V RG++ Sbjct: 294 LIASFVNLYYDQGSFVPEEVLLPLELEDGTGG--LEALLTERKGERVRVLVPKRGEKLDL 351 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 +K+A NA A + + L+ L L L RMECFDISH G VAS V Sbjct: 352 VKMAAKNAEQAFVERRRTKDETDTVLSRLQQRLGLRNFPCRMECFDISHFQGSAIVASQV 411 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 ++ YR+Y I + DD+A+M +V+ RR K ++D+ +PD+++IDGGKGQLA Sbjct: 412 AVTDGDADKSRYRKYKIKTLEKQDDFASMYEVISRRLKKGLEDNDLPDLLVIDGGKGQLA 471 Query: 474 QAKNVFAELDV-SWDKNHPLLLGVAKGA-----DRKA----GLETLFFEPEGEGFSLPPD 523 A ++ V S D ++G+AK DR A E +F + L + Sbjct: 472 SAHAAMKDVGVESVD-----VVGLAKSRDLEVFDRDAESARSPERIFVVGRKDPIVLSQN 526 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 S + ++ +RDE+H AI ++ K + S+LE I GVG RR+ LL++ G L+ + Sbjct: 527 SAEMFMLTRMRDEAHRFAITFQKQVLRKSRVRSALEDIPGVGETRRKQLLRHFGSLKRVG 586 Query: 584 NASVEEIAKVPGISQGLAEKIFWSL 608 +AS+EE+A+V G +AE++ L Sbjct: 587 DASIEELAEVVG--PAMAERVHAGL 609 >UniRef50_C1A8T0 UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=UVRC_GEMAT Length = 616 Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 218/608 (35%), Positives = 322/608 (52%), Gaps = 29/608 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVT 69 L + PGVY D G V+YVGKAK L+ R+ SY+ + + +S KT A+V +++ ++ Sbjct: 7 LPHLPESPGVYLWKDVEGQVLYVGKAKRLRSRVRSYWAQEHESSPKTRAMVRKVRDLETI 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 V +E AL+LE IK Y PR+N+ LRDDKSYP+I ++ + PR+ + R Y Sbjct: 67 VVPSEAHALILEATLIKEYHPRFNIALRDDKSYPYIRVTVNEPFPRVMVTRRLLDDGARY 126 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVY-RNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 FGP+ + A+R L ++++IF +R C ++ RPCL Y I RC PCV G S E+ Sbjct: 127 FGPYTDVGAMRRALNVVKRIFTVRSCHYALPGEAPERPCLDYSIKRCKAPCV-GYQSRED 185 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y ++ V FL G+ V+ + RM AS+ L+FE AA +RD + + ++ V Sbjct: 186 YRAMIDEVVWFLDGRTSDVMHHVRERMLDASERLDFERAAELRDALAHLEKMESPSVVLE 245 Query: 248 T-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 G D DV+G A D ACV V+ IR GK+L + E V+ + Q+Y + Sbjct: 246 VEGGDRDVVGYARDGEDACVAVMRIRGGKLLARDHRLLEHAEDEEDGAVLGACLAQWY-R 304 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 ++ R GE+L+ F+ D+ L SL +++ RG R + LA NA L Sbjct: 305 TAEARA--GELLVPFDFEDRESLEASLD-----GTHIRVPQRGPRRALVDLADQNARHLL 357 Query: 367 T----SKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPL 421 + L + L L LP + R + CFDISH G VAS V F+ P Sbjct: 358 EEFKLAALEADERAVDPVYELQRELGLPRLPRSLVCFDISHAQGTDVVASAVFFENGRPK 417 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFA 480 R+EYR++ I DD+ +M++V+ R + + +D+ K +PD+ +IDGGKGQL A+ Sbjct: 418 RSEYRKFKIKVFEGNDDFRSMHEVVTRYFRRRLDEEKPLPDLAVIDGGKGQLGAARAALD 477 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 EL +G+ A R+ E +F + LP SPAL ++Q RDE+H Sbjct: 478 ELGAPQ-------IGLISLAKRE---EEIFQYGRPDPVRLPRRSPALRMLQQARDEAHRF 527 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI R+KRA TS L I GVGP +R+ LL G +QG+R ASVE+IA +PG Sbjct: 528 AITFQRQKRAARTITSELLKIPGVGPTKRRALLHTFGSVQGVREASVEQIAAIPGFGAAS 587 Query: 601 AEKIFWSL 608 A ++ +L Sbjct: 588 ARRLLEAL 595 >UniRef50_B3QRR8 Excinuclease ABC, C subunit n=3 Tax=Bacteria RepID=B3QRR8_CHLT3 Length = 640 Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 211/616 (34%), Positives = 345/616 (56%), Gaps = 38/616 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVAQIQQIDV 68 LK + + PGVY+ D VIYVGKAK+L+ R+ SYFR NL+ S KT LV +I +++ Sbjct: 34 LKNLPTSPGVYQFKDKDERVIYVGKAKNLRARVQSYFR-NLSEHSGKTRLLVRRIMDLEL 92 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEY 128 +T TE EAL+LE+N IK +PRYN+ L+DDKSYP+I ++ + PR+ R + +Y Sbjct: 93 ILTGTEVEALILENNLIKQLKPRYNINLKDDKSYPYIVVTNEPFPRVFPTRNVRRDGSKY 152 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +GP+ +R L + +IF +R C + ++ + + CL Y I +CLGPC E L Sbjct: 153 YGPYTETRQMRMLLDAISEIFQVRSCSLNMTDENIAARKFKVCLDYHIKKCLGPC-EALQ 211 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S E+Y ++ V+ L GK ++ L SRM+ ++ L+FE AA I+ Q++A+ R + +Q Sbjct: 212 SREDYDAMIDEVKKLLRGKTKDIVRSLESRMKNYAKELKFEYAAEIKRQLEALERYSARQ 271 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V T + D D+ VA + AC V +R GK+LGS+ ++ ++ +V + + Sbjct: 272 KVLTTDEIDRDIFAVAREGDDACGTVFKVRDGKLLGSQHFYFSNVEDEPMANLVGRLLEK 331 Query: 303 FYLQGSQMRTLPGEILLDFNLSDK----TLLADSLSELA-GRKINVQTKPRGDRARYLKL 357 +YL+ + + LP EI S++ LL +SE+ +K++ GD+A+ + + Sbjct: 332 YYLETTDI--LPNEIFTAEQPSNQDAIEALLQKRMSEIGEQKKVHFVIPQIGDKAKLVDM 389 Query: 358 ARTNAATALTS------KLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVA 410 NA L+ K + + + +L L+L + +R+ECFD S+ G VA Sbjct: 390 CAANAKHLLSEYQLQKQKRGEAKAIPHAVRSLERDLRLAKPPRRIECFDNSNFQGTDPVA 449 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGK 469 S + F P +++YRR+ I + +D+A+M +++ RRY ++ +S +PD+I++DGGK Sbjct: 450 SMICFVDGKPKKSDYRRFKIKTVEGANDFASMAEIIERRYTGSLAESLPMPDLIVVDGGK 509 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL+ A V + V ++G+AK LE +FF E +LP S +L + Sbjct: 510 GQLSSAYAVLQKSGVGVP-----VIGLAK------RLEEVFFPNEQLPHNLPKTSSSLKL 558 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 +Q +RDE+H AI HR+ R+K + L IEG+G + + LLK G + ++ AS E Sbjct: 559 LQQVRDEAHRFAITFHRELRSKRTLQTELTEIEGIGKTKAEKLLKTFGSVAEVKKASAEA 618 Query: 590 IAKVPGISQGLAEKIF 605 +A+ G + AE+IF Sbjct: 619 LAEAVG--KKAAERIF 632 >UniRef50_A5FM03 UvrABC system protein C n=25 Tax=Bacteroidetes RepID=UVRC_FLAJ1 Length = 597 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 206/601 (34%), Positives = 322/601 (53%), Gaps = 39/601 (6%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 T+ PGVY+ YD G ++YVGKAK+LKKR+SSYF + KT LV +I I V Sbjct: 12 TLPDNPGVYQYYDKDGKILYVGKAKNLKKRVSSYFNKIHDTAKTNVLVKKIVTIKHIVVP 71 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPF 132 TET+ALLLE+N IK QPRYNVLLRDDKSYP+I + + R+ + R EYFGP+ Sbjct: 72 TETDALLLENNLIKTLQPRYNVLLRDDKSYPWICIKKEPFSRIFLTRRMVKDGSEYFGPY 131 Query: 133 PNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 N V L L+++++P+R C ++++ + + CL+Y IG C GPC EGL EE Sbjct: 132 TNFKMVYTILDLIKELYPLRTCNYDLSQSNIDSGKFKVCLEYHIGNCKGPC-EGLEPLEE 190 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y +QV +R L G + L M +QNL+FEEA +I+++I+ + + + N Sbjct: 191 YQRQVNAIREILKGNFKESLKDFKKLMNNYAQNLQFEEAQKIKEKIEVLENYQSRSTIVN 250 Query: 248 TG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 ++DV + D A V+ L I G ++ S + K E++E + + Sbjct: 251 PKITNIDVFSIISDESAAYVNFLQISHGSIIRSHTLEMKKKLDESDEELLELAIIEL--- 307 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + + + EI++ F + G I GD+ + L L+ NA Sbjct: 308 RERFQLMSKEIIVPFEID------------LGENIKTTVPQLGDKKQILDLSIRNAKFYR 355 Query: 367 TSKLSQQST------VHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANG 419 +L Q V++ + + L+LP E + +ECFD S+ G VA+CVVF Sbjct: 356 IEQLKQLQIVDPDRHVNRIMAQMQKDLRLPVEPRHIECFDNSNIQGTNPVAACVVFKDGK 415 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNV 478 P + +YR +N+ + DD+A+M +++ RRY + +D+++ +P +I+IDGGKGQL+ A Sbjct: 416 PSKKDYRHFNVKTVEGPDDFASMTEIVYRRYKRLLDENQPLPQLIIIDGGKGQLSSALKS 475 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 EL + + ++G+AK LE LF+ + L S L VIQ +R+E+H Sbjct: 476 IDELGL---RGKVAIIGIAK------RLEELFYPGDSIPLYLDKKSETLKVIQQLRNEAH 526 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 I HR KR+K SS+E+I G+G K L+++ ++ L+ A+ +EI+ V G+S+ Sbjct: 527 RFGITFHRDKRSKAALNSSVESIPGIGEKTMLTLIQHFKSVKRLKLATEKEISAVVGVSK 586 Query: 599 G 599 Sbjct: 587 A 587 >UniRef50_A1ZTX2 Excinuclease ABC, C subunit n=4 Tax=Bacteroidetes RepID=A1ZTX2_9SPHI Length = 601 Score = 335 bits (859), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 208/611 (34%), Positives = 335/611 (54%), Gaps = 54/611 (8%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQI 66 +A LK + + GVY+ +D ++YVGKAK+LK R++SYF +S +RKT LV QI + Sbjct: 5 EATLKQLPTNAGVYKFFDKNNVLLYVGKAKNLKNRVNSYFNKSAQHNRKTINLVKQIAHV 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 D TV ++E +ALLLE+N IK YQP+YN+LL+DDK+YP+I ++ + P+L + R + KG Sbjct: 65 DYTVVNSEFDALLLENNLIKNYQPKYNILLKDDKTYPYILITNEPFPKLVVTRKLEKNKG 124 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEG 181 ++GPF N A+ + L+++++ IR C + ++ +N+ + CL+Y +G C PC EG Sbjct: 125 RFYGPFTNLKAMNAIVELIRELYTIRTCNLHLSKENIQQNKFKLCLEYHLGNCQAPC-EG 183 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L SEE+Y + +E+ + + G V T L +M ++ LEFE+A + ++ ++ + Sbjct: 184 LQSEEDYLKDLEHAKHIMKGNIHIVKTYLKEQMLAYAEKLEFEKAESQKQKLASLDKFQS 243 Query: 242 KQFVSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 K V N D DV + D + V+ L I+ G ++ ++S + +L E E Sbjct: 244 KSLVVNPNKVIDTDVFSIISDENYSYVNFLKIKNGAIIHTQS----IEIAKKLDETEEEI 299 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINV------QTKPR-GDRA 352 + L+ FNL D T+ +++ + +N+ T P+ GD+ Sbjct: 300 LT----------------LVAFNLRD-TIGSNAPEIITNLPLNISDDRFTNTIPKIGDKK 342 Query: 353 RYLKLARTNAATALTSKLSQ----QSTVHQR--LTALASVLKLPEVKR-MECFDISHTMG 405 + L L++ N K+ Q Q R L L VL++ E+ R +ECFD S+ G Sbjct: 343 KLLSLSQKNVLYYKKEKIQQRLLRQGKDKSRVVLEELQQVLRMKELPRHIECFDNSNIQG 402 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVIL 464 VAS V F P + YR +NI + DD+A+M +++ RRY + + + +++P +I+ Sbjct: 403 IYPVASMVFFRNGFPYKKGYRHFNIKTVVGPDDFASMKEIVHRRYKRLLYEKAELPQLIV 462 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 IDGGKGQL+ A ELD+ + ++G+AK LE ++F + + S Sbjct: 463 IDGGKGQLSAACEALKELDLYGE---ITIIGIAK------KLEEIYFPEDSIPLHISKKS 513 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 PAL ++Q +RDE+H AI HR KR+ S LE IEGVG K LL++ + + Sbjct: 514 PALKLLQKVRDEAHRFAIEFHRNKRSNDSLHSELEAIEGVGEKTITSLLRHFKTVNNVAQ 573 Query: 585 ASVEEIAKVPG 595 AS +EIAKV G Sbjct: 574 ASTQEIAKVVG 584 >UniRef50_Q2JCI3 UvrABC system protein C n=12 Tax=Actinomycetales RepID=UVRC_FRASC Length = 705 Score = 335 bits (859), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 234/683 (34%), Positives = 345/683 (50%), Gaps = 82/683 (12%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF + +T+ + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFAELHTLHPRTQHM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V+ +D TV TE EAL LE+ +IK + PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VSSASSVDWTVVSTEVEALQLEYTWIKQFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ + RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSGGVFKRAAQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V + + VE F+SG+ + L +L M+ A+Q E+E AAR+RD I A Sbjct: 181 APCV-GRVDAATHREIVEDFCDFMSGQTGRYLRRLEREMQQAAQAQEYERAARLRDDIGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DVI A D A V V ++R G+V G R + ++ Sbjct: 240 LRRAVEKQAVVLPDGTDADVIAFAEDELEAAVAVFYVRGGRVRGQRGWVVDKLDEVTTAD 299 Query: 295 VVETFVGQFYLQ-------------------GSQMRTLPGEILLDFNLSDKTLLADSLSE 335 +VE F+ Q YL GSQ +P EIL+ D + + L Sbjct: 300 LVEQFLTQEYLDGTGAASTGTAGSTVPTTTAGSQGEGIPREILVPALPPDVEAVTELLGA 359 Query: 336 LAGRKINVQTKPRGDRARYLKLARTNAATAL----TSKLSQQSTVHQRLTALASVLKLPE 391 G ++ V+ RGD+ L+ NA A T + S + + L L L+LP+ Sbjct: 360 ARGSRVEVRVPRRGDKRTLLETVERNAKQAFALHRTKRASDLTARSRALAELQEALELPD 419 Query: 392 VK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGIT---------PGDDYAA 441 R+ECFD+S+T G VAS VVF+ P ++EYRR+ I GI GDD A+ Sbjct: 420 APLRIECFDVSNTQGTNVVASMVVFEDGLPRKSEYRRFAIRGIAGREGAGREGAGDDVAS 479 Query: 442 MNQVLRRRYGKAIDD-SKI-----------------------------------PDVILI 465 M + + RR+ + + + S+I P+++++ Sbjct: 480 MYETIHRRFSRYLAERSRIADIADIAELGDIAGAPGAAQPIDPGTGRPRRFAYPPNLVVV 539 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGG Q+A A EL + L G+AK LE ++ + LP S Sbjct: 540 DGGAPQVAAAARALDELGIDAGPGGVALCGLAK------RLEEVWLPDTADPVILPRTSE 593 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 AL+++Q +RDE+H AI HR+KR+ S+L+ + G+G RR+ LL++ G + +R A Sbjct: 594 ALYLLQRVRDEAHRFAIAYHRQKRSTAMVASALDEVPGLGDTRRKALLRHFGSVAKIRAA 653 Query: 586 SVEEIAKVPGISQGLAEKIFWSL 608 S E+IA+V GI A I +L Sbjct: 654 SAEQIAQVSGIGPRTAAAIVTAL 676 >UniRef50_C7H041 Excinuclease ABC subunit C n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H041_9FIRM Length = 626 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 224/628 (35%), Positives = 336/628 (53%), Gaps = 41/628 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD +A +K + PGVY D+ G VIYVGKA +LKKR+ SYF + SRK +V QI Sbjct: 2 FDIEANVKKLPEVPGVYLHKDSTGKVIYVGKANNLKKRVQSYFSKTVKSRKVAYMVRQIT 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKH 123 + + VT E EAL+LE N IK Y PRYNVLL DDK+YP+I +S D +PR+ R + Sbjct: 62 EFEYIVTANEKEALILECNLIKKYMPRYNVLLTDDKTYPYIKISEDEEYPRITKTRRIEK 121 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +YFGP+ + +A E + LL KI+ +++C+ + + R CL Y IG+C G C+ G Sbjct: 122 DGAKYFGPYSDEFAANEIMDLLNKIYRLKKCKLQKFPDGMRACLNYHIGQCDGMCI-GKG 180 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + E+Y ++E + FL G+D ++ L +M+ AS + +E AA RD I + + + EKQ Sbjct: 181 NREDYLDRIEKAKDFLQGRDKSLIHTLRKKMQEASDGMLYESAAMYRDYITSAKSILEKQ 240 Query: 244 FVSNTG-DDLDV-IGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 S+ G D+DV + + D + + V FIR GK G Y + ++E F+ Sbjct: 241 SASSVGMGDIDVLVPIVTDTAIKML-VFFIRDGKTCGREIYNMQQELAEGEEALLEGFIQ 299 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q Y+QG+ P EI+L + L+ K LL + L E AG+K+ + RG + LK+A+ + Sbjct: 300 QNYVQGA---YFPDEIVLGYELNQKELLEELLHEFAGKKVYITCPVRGKKRELLKMAKKD 356 Query: 362 AATALTSKLSQQSTVHQRLTALASVLK--LPEVK---------------RMECFDISHTM 404 A ++ +R L+ L L E+ +E +DIS+ Sbjct: 357 AEYLKGVIKTKDEASRERKKELSYKLGRILNEMNGGRYEYGFNDAGGEYTVEAYDISNIN 416 Query: 405 GEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK----AIDDSKIP 460 G VA VVF P ++ YR++ I I DDY +M +VL RR+ + A S +P Sbjct: 417 GIDNVAGMVVFTGFAPEKSRYRKFKIKSIEGQDDYGSMREVLFRRFTRYKEGAPGFSDLP 476 Query: 461 DVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSL 520 D+I +DGG+G + A +V LD+ ++G+AK D K + L ++ G+ F + Sbjct: 477 DIIFMDGGRGHVNAALDVLKYLDLEIP-----VIGMAK--DDKHRTKELVYKV-GDKFKV 528 Query: 521 PP----DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 P D+ L + I++E H +AI H R + S LE IEGVGPK+R LLK Sbjct: 529 YPLAGSDNFMLAYVGRIQEEVHRYAISYHISLRDRSMTKSILENIEGVGPKKRAALLKKW 588 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKI 604 G ++ + AS EE+ GI+ LA KI Sbjct: 589 GTIEAIEKASAEELEATEGINLKLALKI 616 >UniRef50_B3WE47 UvrABC system protein C n=33 Tax=Bacilli RepID=UVRC_LACCB Length = 602 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 211/602 (35%), Positives = 330/602 (54%), Gaps = 37/602 (6%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEA 77 PG Y+M D G +IYVGKAK+LK R+ SYF+S+ K A+V+Q+ D VT T+ EA Sbjct: 17 PGSYQMKDINGKIIYVGKAKNLKNRVRSYFKSS-HDGKVAAMVSQVADFDFIVTSTDKEA 75 Query: 78 LLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYA 137 LLE I+ YQP YN+ L+ YP+I ++ + P++ + + G YFGP+PN YA Sbjct: 76 FLLEITLIQKYQPYYNIKLKKGTGYPYIKITHERDPKIEITGTIRKDGGYYFGPYPNVYA 135 Query: 138 VRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRL 197 +ET+ +QK++P+R+C + RPCL Y +G+CLG C V E+EY Q+E ++ Sbjct: 136 AQETMHFIQKVYPLRRCNGY----QGRPCLYYHMGQCLGACFRT-VPEKEYTDQIERIKR 190 Query: 198 FLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTGDDLDVIG 256 FL+G + L ++ME A++NL+FE AA IRDQ+ + + EKQ +S+ D+ Sbjct: 191 FLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKIISHDNTTRDLFN 250 Query: 257 VAFDAGMACVHVLFIRQGKVLGSRS-YFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPG 315 D G + V FIRQ +++ S FP V E E+F+ QFY + + ++ P Sbjct: 251 FYMDKGWISIQVFFIRQARLMKRESRLFPVV---NTAKEEFESFILQFYSRKNNVK--PR 305 Query: 316 EILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK-----L 370 E+L+ L +K +LAD L +I V+T RG++ + LA N+ L K L Sbjct: 306 EVLVPAALDNK-VLADIL------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMEL 358 Query: 371 SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI 430 ++T+ + L + L LP E FD SH G V++ V F P + YR+Y + Sbjct: 359 DNRTTIGA-MKELMAALNLPMGHVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKL 417 Query: 431 TGITP---GDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 D+ A +V+RRRY + + + + +PD+IL+DGG+ ++ AK+V L+ Sbjct: 418 DADKTHNGADEAANTREVIRRRYTRLLKERAPLPDLILMDGGEIEMNAAKDV---LENEL 474 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 + + P + G+ K K L F + +L P S ++++ I+DE H AI HR Sbjct: 475 NLDIP-VAGMVKNNKHKTA--ALLFGNADQLINLDPKSQGFYLLERIQDEVHRFAITFHR 531 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 + AK S LE I+GVGPK R LL+ + ++ A +E+I ++ GIS+ +A+ + Sbjct: 532 QLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GISKKVAQALKL 590 Query: 607 SL 608 SL Sbjct: 591 SL 592 >UniRef50_D2ML33 Excinuclease ABC, C subunit n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML33_9BACT Length = 583 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 198/589 (33%), Positives = 332/589 (56%), Gaps = 18/589 (3%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 82 M GGT +Y+GKAK+L+ R+ SYF+ + LV ++ ID VT E+EAL +E+ Sbjct: 1 MKGPGGTPVYIGKAKNLRARVMSYFQRGSDRGQIPYLVREVDSIDYVVTEGESEALFIEN 60 Query: 83 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 141 + IK ++P+YN+ L+DDK++ + LS G+ PRL+ R + YFGPF +G ++ T Sbjct: 61 SLIKRHKPKYNIRLKDDKTFSSLRLSVGERFPRLSRTRRIRDDGALYFGPFASGKFLKST 120 Query: 142 LALLQKIFPIRQCENSVY-RNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLS 200 + L+ ++FP+R C S + R+ +RPCL Y + C GPC G +SEE+Y + V FL Sbjct: 121 VNLVHRLFPLRDCTQSKFERHSTRPCLNYFMKLCSGPCA-GKISEEDYGELVSQATSFLR 179 Query: 201 GKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE-KQFVSNTGDDLDVIGVAF 259 G+ +++ + ME AS++ +E AA RDQ+ +++ E ++ S+ +D+D++G Sbjct: 180 GERKKLVRMIREMMERASEDGRYENAAYYRDQLVSLKENAEIEKVTSSRFEDMDIMGFYR 239 Query: 260 DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILL 319 D+ VL R G V+ + K P G E +E V F+G+FY +P +LL Sbjct: 240 DSENYEFTVLLSRGGSVVDKLDFSVKSPHGDE-AECVREFLGRFYFSDH---YIPKRVLL 295 Query: 320 DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL---SQQSTV 376 ++ D+ ++ L+E G+++ V+T RG ++ ++ A NA + K ++Q T+ Sbjct: 296 PLSIRDREGYSEWLTEKKGKRVYVETPRRGPKSELVRFAMKNARESFARKAEEKAEQGTL 355 Query: 377 HQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG 436 + + A + ++P +ECFDIS+ G QTVAS V F P R YR+Y IT Sbjct: 356 LRGIRKSAGITRVPYA--IECFDISNIQGRQTVASLVRFRNARPERDRYRKYRITATKGQ 413 Query: 437 DDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLG 495 DD+ +M +V+ RR + +D+ +PD+ILIDGGKGQL A +A L ++ L Sbjct: 414 DDFRSMYEVVYRRALRVAEDNWDLPDLILIDGGKGQLNAA---YAALRDCGVQDEVDLAS 470 Query: 496 VAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNT 555 +AK R +G++ ++ +GE + ++ + +RDE+H AI HR R + Sbjct: 471 IAKTEGR-SGVDRIYVHGKGEPCDFSSNKKGIYFLMRVRDEAHRFAITYHRGLRKEKTLA 529 Query: 556 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 S ++ + G+G KR+ +LL + G ++ ++ A+ EE+A V G+++ A I Sbjct: 530 SQMDGVPGIGKKRKFLLLNHFGSVEKIKGATAEELAYVKGMTKQAARNI 578 >UniRef50_A7HD93 UvrABC system protein C n=5 Tax=Bacteria RepID=UVRC_ANADF Length = 716 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 228/664 (34%), Positives = 336/664 (50%), Gaps = 85/664 (12%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ----I 66 L + ++PG Y M D G V+YVGKA L+ R+ SYF ++ + A VA + + + Sbjct: 9 LDELPAEPGCYLMKDRRGAVVYVGKASSLRSRVRSYFDASRGDDR--AFVALLDELLGDV 66 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH---PRLAMHRG--A 121 +V VT +E EA+LLE+ IK ++PR+N+ LRDDK FI L D PRL + R Sbjct: 67 EVIVTRSEKEAVLLENELIKRHRPRFNIRLRDDKD--FIVLRLDERHAFPRLEVRRAREP 124 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + A YFGP+ + ++RETL ++ + F +R C + V+ +R RPC+ YQI RC PCV Sbjct: 125 RRAGARYFGPYSSASSIRETLRVVNRHFQLRTCTDHVFEHRKRPCILYQIKRCPAPCVYD 184 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 V E EY Q VE FL G++ +++ +L RM+ A+ L FE+AAR+RDQ+QAV R E Sbjct: 185 -VPEAEYRQSVEDAIEFLEGRETELVERLHGRMDEAADALRFEDAARLRDQLQAVERSLE 243 Query: 242 KQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY------FPKVPGGTELSE 294 KQ V D DV+G+ + V VL +R GK+ SRSY FP E Sbjct: 244 KQRVLMADRADRDVVGLYREGPDLVVQVLAMRAGKLQDSRSYPFHEQEFPD-------EE 296 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 + +F+ +Y Q + P EIL+ ++ LAD LSE GR++ + T RG +A Sbjct: 297 TLSSFLSLYYEQNAA----PEEILVPVEPAEVDALADVLSERRGRRVRLLTPQRGAKADL 352 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCV 413 L++A NA S + Q L AL L L R MEC+DIS G V S V Sbjct: 353 LEVAARNAEQGFRSWHEKDERREQALAALTRALHLARPPRWMECYDISTFQGALAVGSGV 412 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 F P +A YRRY + G+ DD+A + +V+ RR +A+ + PD+++IDGGKGQL Sbjct: 413 SFRDGEPDKACYRRYKVKGVAGQDDFAMLYEVVSRRLRRALGEGAFPDLLVIDGGKGQLN 472 Query: 474 QAKNVFAELDVSW-----DKNHPL--LLGVAKG--------------------------- 499 A +L V ++ P L+G+AK Sbjct: 473 AALAAAKDLGVPTKPSPGNEGAPFVELVGLAKSRLVDAPALGTTRVIGRRGRGGGASRAA 532 Query: 500 ------------------ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 ++ E +F + L +S L ++ +RDE+H A Sbjct: 533 SGAAALADAAEAQEHGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFA 592 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I HRK R + S LE I G+G R++ LL++ G L+ ++ A+++EI++V G A Sbjct: 593 ITFHRKLRRERNFQSVLEEISGIGEGRKRALLRHFGALRRVKEATLDEISQVDGFGPKQA 652 Query: 602 EKIF 605 +F Sbjct: 653 RAVF 656 >UniRef50_B3EU62 Excinuclease ABC, C subunit n=2 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3EU62_AMOA5 Length = 596 Score = 331 bits (849), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 205/598 (34%), Positives = 329/598 (55%), Gaps = 47/598 (7%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVTVTHTE 74 +QPGVY Y+ +IYVGKAKDLKKR+SSYF N KT +V +I I T+ ++E Sbjct: 16 NQPGVYFFYNKQQQIIYVGKAKDLKKRVSSYFNKNQQDNLKTRRMVEEIAAISFTIVNSE 75 Query: 75 TEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPN 134 EALLLE+N IK +QPRYN+LL+DDKS+P+I ++ + P++ R G+Y+GPF + Sbjct: 76 YEALLLENNLIKRFQPRYNILLKDDKSFPYICITRERFPKVITTRQPGAKLGQYYGPFTD 135 Query: 135 GYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 + + L L++ ++ +R C E ++ +++ + CL+Y IG C GPC EGL +EE Y Sbjct: 136 LKNMYQILDLIKSLYTLRTCNYNLLEENICKHKFKVCLEYHIGHCKGPC-EGLQTEEAYN 194 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Q ++ + FL G + V +M A+ ++++ A +++I A+ K V N Sbjct: 195 QDIQQIEHFLKGNINAVKKHFKEKMSQAAAAMDYKNAQAYKEKIAALENYQSKSLVVNPQ 254 Query: 250 -DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ-G 307 +LDV + DA A + L I++G ++ +++ K +L E+ E + L Sbjct: 255 VGNLDVFAIVSDAKAAFISYLQIKEGAIICTQNTEIK----KQLEELDEDILPLIILHFR 310 Query: 308 SQMRTLPGEILLDFNLS---DKTLLADSLSELAGRKINVQTKPR-GDRARYLKLARTNAA 363 + + P EIL++ ++ DK +L T PR GD+ + ++LA N Sbjct: 311 EKYASNPSEILVNIPIATTFDKAML---------------TVPRIGDKKKLVELATKNVL 355 Query: 364 ----TALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 AL + Q+ ++ L L L+L ++ +ECFD S+ G VA+ VVF Sbjct: 356 FLKREALLRQEDNQNRANKTLVLLQHDLQLKDLPLHIECFDNSNIQGTHPVAAMVVFQHG 415 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKN 477 P + EYR +NI + DD+A+M +++ RRY + I+++ K+PD+I+IDGGKGQL A Sbjct: 416 KPAKKEYRHFNIKTVVGPDDFASMREIVTRRYRRLIEENQKLPDLIVIDGGKGQLGAAVA 475 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 EL + ++G+AK LE ++F + + SP+L ++Q IR+E+ Sbjct: 476 ALQELGIY---GQIPIIGIAK------RLEEIYFPEDSYPIHISKQSPSLKLLQQIRNEA 526 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 H AI HR KR+K S LE+I GVG K LL++ G +Q ++ AS++ +A G Sbjct: 527 HRFAITFHRDKRSKTSLKSQLESIPGVGEKTITTLLQHFGSVQNIKEASLKALASQVG 584 >UniRef50_A2RLW6 UvrABC system protein C n=11 Tax=Bacilli RepID=UVRC_LACLM Length = 669 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 215/653 (32%), Positives = 333/653 (50%), Gaps = 74/653 (11%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 KA L+ + PG Y D GTVIYVGKAK+LK R+ SYF + + KTE LV++I+ ++ Sbjct: 6 KAKLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGS-HNTKTELLVSEIEDLE 64 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 V + E+L+LE N I+ Y+P+YN++L+DDK YPF+ ++ + +PRL + R + Sbjct: 65 WIVVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITNEKYPRLLVVRKVQKDGAT 124 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGP+P+ A E LL +IFP R+C + + C + I +CL P V V + Sbjct: 125 YFGPYPDVKAANEVKRLLDRIFPFRKCG----LHEKKVCFYFHIHQCLCPVVNH-VDPQV 179 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y + V+ FL+G D +++ +L +M +AS N+EFE+AA RD I+A+ + KQ V N Sbjct: 180 YKDMTQEVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRVMN 239 Query: 248 TG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 D DV G D G CV V F+RQGK++ P + E T++GQFY Sbjct: 240 QDLKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNM--FPYYNDAEEDFLTYIGQFYQD 297 Query: 307 GSQMRTLPGEILL--------------------------------------DFNLSDKTL 328 + M +P EI + SD+ Sbjct: 298 NNHM--MPREIFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQKD 355 Query: 329 LADSLSELAGR------------KINVQTKPRGDRARYLKLARTNAATALTSKLSQQS-- 374 + S+ +L K + RG++ + + +A NA T L K Sbjct: 356 VEQSIVKLDKELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAERD 415 Query: 375 --TVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG 432 + + L +L +P+ R+E FD S+ MG V++ VVF P + +YR+Y I Sbjct: 416 ILKTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT 475 Query: 433 ITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHP 491 + DDYA+M +V+ RRY +A+ +++ +PD+I +DGG GQ+ AK V EL ++ Sbjct: 476 VVGADDYASMREVMTRRYSRALKEETALPDLIAMDGGAGQVNIAKEVLRELGLAIP---- 531 Query: 492 LLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAK 551 + G+ K D+ E LF +P E L S ++ I+DE H AI HR+ R K Sbjct: 532 -VAGMQKN-DKHQTSELLFGDP-LEVVPLSRQSQEFFLLTRIQDEVHRFAITFHRQLRGK 588 Query: 552 VKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 +S L+ I G+GPKR+Q LL L+ + A+V+E+A+ G+ +AE++ Sbjct: 589 NTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERV 640 >UniRef50_C5BV40 UvrABC system protein C n=16 Tax=Actinomycetales RepID=UVRC_BEUC1 Length = 693 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 230/666 (34%), Positives = 347/666 (52%), Gaps = 69/666 (10%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M+D + + PGVYR D G V+YVGKAK L+ RLSSYF+ A +T+ + Sbjct: 1 MADPTTYRPRPGEIPDAPGVYRFRDPHGRVVYVGKAKSLRSRLSSYFQDLSALHPRTQQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+++IK + PR+NV RDDKSYP++ ++ G+ PR+ + Sbjct: 61 VTTASSVEWTVVGTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTMGEEVPRVQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRCL 175 RGAK YFGP+ + +A+RET+ LL ++FP+R C + VY+ + RPCL I +C Sbjct: 121 RGAKRKGTRYFGPYGHAWAIRETVDLLLRVFPVRTCSSGVYKRAAASGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +S E++ E F++G+ L +L S M AS L+FE AAR+RD I A Sbjct: 181 APCV-GRISVEDHRDLAEDFCSFMAGESGVFLRRLESEMAAASAELDFERAARVRDDINA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RRV EK V G D DV +A D V V +R G+V G R + + + Sbjct: 240 LRRVVEKNAVVLADGTDADVFALAADELEVSVQVFHVRGGRVRGQRGWVTERVEDLDDGA 299 Query: 295 VVETFVGQFYLQGSQMRT-------LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKP 347 +VE + Q Y + + +P E+L+ D LA+ LS L G +++++ Sbjct: 300 LVERLLQQVYGPYATEKGPDGGATGVPREVLVPALPDDAVELAEWLSTLRGSRVSLRIPQ 359 Query: 348 RGDRARYLKLARTNAATAL----TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISH 402 RG++ + RTNA AL T + ++ + L+ L L L E R+EC+DIS Sbjct: 360 RGEKRALAETVRTNAQQALALHKTRRAGDLTSRSRALSELQEELGLAESPLRIECYDIST 419 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGIT---PGDDYAAMNQVLRRRYGK------- 452 G V S VVF+ ++EYR++ + G DD AM++V+ RR+ + Sbjct: 420 LQGTHQVGSMVVFEDGLARKSEYRQFVVRGADGQGARDDTEAMHEVITRRFRRYLAQRDV 479 Query: 453 -----------AIDDSKI-------------------PDVILIDGGKGQLAQAKNVFAEL 482 A DD + P+++++DGG Q+A A+ EL Sbjct: 480 GVAGGGSGEVPAEDDDGVAIAGPVDPETGRPARFAYPPNLVVVDGGPPQVAAAQRALDEL 539 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 VS L+G+AK LE ++ E LP S L+++Q +RDE+H AI Sbjct: 540 GVS----DVALVGLAKR------LEEVWLPGEEYPLVLPRASEGLYLLQRVRDEAHRFAI 589 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRK+R K S+L+ + G+GP R+ LL+ G ++ +R A+ EEIA VPG + AE Sbjct: 590 THHRKRRGKSMTRSTLDDVPGLGPSRQAALLQAFGSVRRIRAATPEEIAAVPGFGRRTAE 649 Query: 603 KIFWSL 608 ++ +L Sbjct: 650 QVLAAL 655 >UniRef50_B1CBT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBT5_9FIRM Length = 622 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 204/617 (33%), Positives = 340/617 (55%), Gaps = 37/617 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 +K + GVY M D GT+IYVGKAK LK R++ YFR N + K +V I + Sbjct: 13 IKLLPENSGVYLMKDENGTIIYVGKAKVLKNRVTQYFRKNSNHTPKVLKMVENIADFEYI 72 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 +T+ E EAL+LE N IK Y+P YN+L+RDDK+YP+I ++ D +P+L + R + +Y Sbjct: 73 ITNNEMEALILECNLIKKYRPYYNILMRDDKTYPYIKITIKDEYPKLFVTRKYINDGNKY 132 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEGLVSEE 186 FGP+ N ++ ++ + +++PI C+ + + CL Y IG+CLG C +G + + Sbjct: 133 FGPYANATYAKKAVSTINELYPIAMCKKELKSGVKKGNVCLNYHIGQCLGVC-QGNIDTK 191 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 Y + ++ + L+GK +++ L ++M S+NL+FE A ++RD+I A+R + +Q VS Sbjct: 192 LYNRYIKEIIDILNGKTSKIIQSLENKMNGYSENLDFENAGKVRDKIFAIRGLKSEQNVS 251 Query: 247 N-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D++D++G+A MACV V +R K++G +Y K ++SEV+ F+ QFY Sbjct: 252 NANADNMDILGLAMAEDMACVQVYALRDKKIVGRENYILKGQNEKDVSEVLAAFIKQFY- 310 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P IL++ D + D L+ L +K+ ++ +G++ + LKLA NA Sbjct: 311 --TNTPFIPPLILVEKEFEDIDNIKDLLTNLKSKKVEIKVPVKGEKKKLLKLATDNAKLN 368 Query: 366 LTS---KLSQQSTVHQRLTALASVLKLPEVK-----RMECFDISHTMGEQTVASCVVFDA 417 L + K Q++ + ++ A+ + K + R E +DIS+T G +V VVFD Sbjct: 369 LENIIGKEKQKALMEKK--AVEEINKYANISKEGNFRYEAYDISNTSGVDSVGVMVVFDG 426 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------IPDVILIDG 467 YR++ + I +DY +M +V+ RR +A + K +PDVI +DG Sbjct: 427 AKRNYKAYRKFKVKSIEGPNDYGSMVEVVFRRLNRAQKELKQNDDNPRFLPLPDVIFVDG 486 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G G + KNV D + +LG+ G + K L+ + E E ++ A Sbjct: 487 GIGHVNAVKNVVDTFDFNIK-----VLGL--GKNNKHKLKEVVKNNE-EARNIRDFEFAG 538 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 ++ I +E H AI H+ R+K ++LE IEG+G + + LLK+ ++ L+NAS+ Sbjct: 539 KLLNDISEEVHRFAIDYHKNLRSKSFLKTTLEEIEGIGKVKCRNLLKHFKNMEELKNASI 598 Query: 588 EEIAKVPGISQGLAEKI 604 EEI KV G+++ LA+K+ Sbjct: 599 EEIVKVDGMNEELAKKV 615 >UniRef50_UPI00016BFB47 excinuclease ABC, C subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB47 Length = 602 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 203/600 (33%), Positives = 334/600 (55%), Gaps = 28/600 (4%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVTVTHTE 74 + PGVY M D VIYVGKAK+LK R+S YF+ N S KT +V+ I + VT+TE Sbjct: 6 TTPGVYLMKDDLDEVIYVGKAKNLKNRVSQYFQKNKNHSAKTIKMVSNIASYEYIVTNTE 65 Query: 75 TEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHAKGEYFGPFP 133 EAL+LE N IK Y P+YN+ L+DDK YP+I ++ + PR+ + R +YFGP+ Sbjct: 66 VEALILECNLIKKYSPKYNIRLKDDKRYPYIKINIKSPFPRIQVVRKIIKDDAKYFGPYT 125 Query: 134 NGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 + ++ E + L+++++ +R + ++ ++R CL + IGRC GPC++ ++ EY + Sbjct: 126 DATSMWEMIELIKQLWQLRSXNKKLPKDIGKNRECLNFHIGRCSGPCIKN-ITAREYHKI 184 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN-TGD 250 V+ + FLSG + +T+L RM AS + FE AA +RDQ+ A+ ++ +KQ V + D Sbjct: 185 VDEIVEFLSGDYRKXVTELKQRMSEASDAMNFELAATLRDQLIAIAKLEQKQTVDTASKD 244 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 + D++ A A + V F+R GK++G + + G E + F+ FY + + Sbjct: 245 NQDIVAYAEGTNDALIQVYFVRSGKLVGREHFILRDATGDEAKTLFRNFILXFYAEAT-- 302 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 +P EI++ ++ LL + LS+ G ++ + + +G + L+LA+ NA + Sbjct: 303 -FVPREIVVQVIPAEVELLENYLSDKRGARVVITSPKKGTKFNLLELAKKNAELTFFEQG 361 Query: 371 SQQSTVHQR----LTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 Q + L+ L L L + + R+E FDIS+T G V + VVF+ P +++Y Sbjct: 362 DQLKKKLENTKLALSQLQEALNLEKPIIRIEAFDISNTSGVYPVGAMVVFENGVPKKSDY 421 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 R++ I + +DYAAM ++L RRY A ++ K+PD+I +DGGK Q+A AK V + ++ Sbjct: 422 RKFKIKTVRGQNDYAAMEEMLSRRYKNA-EEGKVPDMIFMDGGKSQVAAAKKVLVKYNLE 480 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 L+ G+ K D K L + E LP S ++ I+DE H AI H Sbjct: 481 I-----LVCGMVK--DEKHRTFGLLY--EDNEIVLPKFSKLFKLVTRIQDEVHRFAIEYH 531 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 RK R + S L+ I+GVGP R+++LL + L+ AS+EE+ + I + +A+ ++ Sbjct: 532 RKLRGNIH--SVLDEIKGVGPVRKKILLLNFKSVYNLKEASLEELEQY--IPKDVAKNVY 587 >UniRef50_C7N5B1 Excinuclease ABC, C subunit n=6 Tax=Coriobacteriaceae RepID=C7N5B1_SLAHD Length = 666 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 215/641 (33%), Positives = 339/641 (52%), Gaps = 52/641 (8%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D K L +V + PGVY + G VIYVGKAK L+ R+ Y K LV QI Sbjct: 9 DIKHQLASVPTLPGVYLWKNKDGEVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVDQIDS 68 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 + V E EAL+LE N I Y P +N +D+KSYPFI L+ GD P + R A Sbjct: 69 FEYIVVENEHEALVLEKNLINQYAPFFNADFKDNKSYPFIALTKGDVFPAIKYTREKHVA 128 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-------------------SRP 165 YFGP+ +G A R+ + +++K+ P+ C +S R +RP Sbjct: 129 STRYFGPYTDGRAARQLVDIVRKVVPL--CSSSCAEWRRLKKKLDNDDLTAFLSETGTRP 186 Query: 166 CLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEE 225 C +G G C G ++ E+Y + VE V FLSG+ + + +L M A+ +L+FE Sbjct: 187 CFDAHVGLGPGACC-GQITPEDYRRHVERVEKFLSGRRTEFIEELTQEMMEAAADLDFER 245 Query: 226 AARIRDQIQAVRRVTEKQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP 284 AAR++ +I + +T++Q VS+ + DV+G+ + +A VHV IR+G+++ S + Sbjct: 246 AARLKSRIDTINSLTDRQHAVSSRNLNADVVGIHREETIAGVHVFMIREGRIINSNEFVL 305 Query: 285 KVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS-ELA---GRK 340 +++ TF+ ++Y ++P E++++ L D + + L+ +LA G K Sbjct: 306 DRGSDVPDEDLLHTFLLRYY---DATTSIPHEVIVERELEDSDAMEEWLTGKLASKFGAK 362 Query: 341 INVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTA----LASVLKLPEVK-RM 395 +++ RG++A L++AR NA+ L + + +R+ A L S L L E R+ Sbjct: 363 VHLTVPARGEKAELLEMARKNASHTLNRYKVRTNYEDKRVNAALLQLESALALDEPPMRI 422 Query: 396 ECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI-TGITPGDDYAAMNQVLRRRYG-KA 453 ECFDIS G TVAS VVF P + +YRR+ I T + DD+ +M +V+ RRY + Sbjct: 423 ECFDISTIHGSYTVASMVVFTDGRPDKGQYRRFKIKTPLDEADDFLSMREVIGRRYAPER 482 Query: 454 IDDSKI---PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLF 510 + D++ PD++++DGG QL + F E+ + N + G+AK E LF Sbjct: 483 MADTRFGKKPDLLILDGGLPQLNAVLDQFEEMGI----NDIPVCGLAKRD------EELF 532 Query: 511 FEPEGEG-FSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRR 569 + G LP S +L++++H+RDESH AI HR+ R K S L+ + G+GP R+ Sbjct: 533 VPWQQTGPVVLPGGSASLYLVKHVRDESHRFAITFHRELRGKGMTKSILDDVVGLGPVRK 592 Query: 570 QMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + LLK MGG + LR AS+EEI + +AE+++ L+ Sbjct: 593 KALLKSMGGFKKLRAASLEEIKATKSVPAEVAEEVYAVLRQ 633 >UniRef50_C1F4W9 UvrABC system protein C n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=UVRC_ACIC5 Length = 645 Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 218/624 (34%), Positives = 330/624 (52%), Gaps = 49/624 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQI 63 D + ++T+ + PGVY +A G VIYVGKAK+L+ R+ SY ++ A+ KT +L+ + Sbjct: 1 MDLQEKIRTLPTGPGVYLYKNADGEVIYVGKAKNLRSRVRSYLLEASQANAKTGSLMREA 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 +D E EAL LE+N IK +PR+NVLLRDDK+YP++ L+ GD +P++ + R + Sbjct: 61 VDLDYITVGNEHEALALENNLIKQRKPRFNVLLRDDKTYPYVKLTLGDRYPKVFVTRRLR 120 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 Y+GPF G + L+ + F + C+ + R +R CLQY I RCLGPCV+ L Sbjct: 121 KDGAAYYGPFFPGNLAYRIVDLIHRSFLLPSCKVDLSRYHARACLQYYIKRCLGPCVKHL 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + E Y + V + FL G+ + L RM+ A+ +FE AA+ RD + + ++ EK Sbjct: 181 TTPEAYREAVRDAQWFLEGRGADLERSLEVRMQEAAAAEQFELAAKYRDLLVTLHQLQEK 240 Query: 243 QFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK-----VPGGTELSEVV 296 Q V S DD DV G ++ GM V++ +R GK++ R +F + + G + EV+ Sbjct: 241 QRVASADDDDADVFGYHYENGMLAVNLFHMRGGKMVDRREFFWEELPEFMEEGAQEEEVL 300 Query: 297 ----------------------ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS 334 + Q Y++ +P I + N +D+ LA L+ Sbjct: 301 PAQAEGRGEVQVELRFEPGAFFSALLKQIYIEQP---YVPRSIYVPVNFADREALAGLLA 357 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL----SQQSTVHQRLTALASVLKLP 390 E +I + RGD+ + LA NA + + Q + + L + +LP Sbjct: 358 EQTHHRIELAVPQRGDKRSLVDLAGQNARQSYEQRFRVMQPNQKAIQEALQDALMLEELP 417 Query: 391 EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY 450 +R+ECFDISH G +TVAS VV++ +A+YR++ I ++ DD+A+M +VL RRY Sbjct: 418 --RRIECFDISHIQGAETVASMVVWENGAMKKADYRKFQIKTVSGVDDFASMREVLTRRY 475 Query: 451 GKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETL 509 + I++ + +PDVILIDGG GQL A EL + VA A R+ + Sbjct: 476 RRVIEEKQAMPDVILIDGGIGQLRAAAAALEELGQTTQT-------VASIAKREEII--Y 526 Query: 510 FFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRR 569 + E E L SP LH++Q IRDESH AI HRK+R S L I GVG + R Sbjct: 527 LYGHEDEPIVLERRSPVLHLVQRIRDESHRFAIAYHRKRREMRDRDSELLEIPGVGTRTR 586 Query: 570 QMLLKYMGGLQGLRNASVEEIAKV 593 LL++ G L+G+R A VE + V Sbjct: 587 TRLLEHFGSLRGVRKADVEALTAV 610 >UniRef50_A9NEZ8 Excinuclease ABC, subunit C n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ8_ACHLI Length = 577 Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 211/611 (34%), Positives = 330/611 (54%), Gaps = 48/611 (7%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K L + ++PG Y M D G VIYVGKAK+LK R+SSYFR + KTE L+++I + Sbjct: 2 KEKLSILPTEPGCYMMLDQSGEVIYVGKAKNLKNRVSSYFRGA-HNAKTEKLISEISDFN 60 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 VT++E E+L+LE+N IK Y P YN+ L DDKSYP++ ++ + P L + R + K + Sbjct: 61 YIVTNSEQESLILEYNLIKKYAPLYNIRLIDDKSYPYLEITNEKDPMLVVSRYIEVDKTK 120 Query: 128 -YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 FGP+PN + RETL LLQ+++P+R+C N V S+PCL Y +G CLGPC V Sbjct: 121 TLFGPYPNSKSARETLKLLQRLYPLRRC-NPV---DSKPCLYYHMGLCLGPCAHEKV--- 173 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +Y +E + FL G +VL +L RM+ AS++LEFE A RD I AV+ TEKQ ++ Sbjct: 174 DYKPNIERITRFLKGDTKEVLNELEERMKQASEDLEFERAVEYRDMILAVKDTTEKQIMT 233 Query: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D D I A++ + +L +RQG++L + + T+ E T++ +Y Sbjct: 234 LNDYKDRDFISFAYNEDDMAIQILMMRQGRILDTHKNV--ISYMTDPYETFLTYIKNYY- 290 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 LP E++ D + K L +++ KI GD+ + + LA NA Sbjct: 291 ---DKFLLPDELVFDQQIPFKELQMYFKNKVVVPKI-------GDKKKLVDLAHKNALED 340 Query: 366 LTS--KL--SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 LT KL +++ + +++ AL + ++ +E FD +H G ++ +V+ Sbjct: 341 LTHYYKLYRAKEEKLGEQIEALEQIFD-KKISYIEVFDNAHLFGTAPISGMIVWKDYHFE 399 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVILIDGGKGQLAQAKNVFA 480 R YR++++ T DDY AM +VL RRY + ++ K+PD+I +DGGKGQ++ A V Sbjct: 400 RKMYRKFHLKTTT-NDDYQAMKEVLYRRYQRLLVEKQKLPDLICVDGGKGQVSAAYEVIQ 458 Query: 481 --ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 LD+ +LG+ K D+ LE + E L SP + + +E H Sbjct: 459 LFNLDIP-------ILGLKK--DKYHMLEGYVI--QNEVTILDKKSPLYQFLGQLSEEVH 507 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 I H+K + + TS L+ I G+GP R++ LL + ++NAS E++ + Sbjct: 508 RFTITFHQKTKNRKDYTSVLDNIPGLGPTRKKKLLASFKSIDDIKNASTEDLRSI----- 562 Query: 599 GLAEKIFWSLK 609 GL +K+ S+K Sbjct: 563 GLPDKVIKSIK 573 >UniRef50_C1B4L2 UvrABC system protein C n=10 Tax=Actinomycetales RepID=UVRC_RHOOB Length = 743 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 238/701 (33%), Positives = 349/701 (49%), Gaps = 105/701 (14%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--SNLASRKTEA 58 M D + T+ PGVY+ D G VIYVGKAK L+ RL+SYF S L R T Sbjct: 1 MPDPSTYRPATGTIPVDPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSTLHPR-TRQ 59 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V ++ TV TE EAL LE+N+IK + PR+NV RDDK+YP + ++ + +PRL + Sbjct: 60 MVTTAGSVEWTVVSTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFV 119 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRC 174 +RG + YFGP+ + +A+RETL LL ++FP R C V++ + RPCL I +C Sbjct: 120 YRGPRRKGVRYFGPYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKC 179 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 PCV G VS E+ + VE FLSG+ D+++ QL +RM+ AS+ L+FE AAR+RD + Sbjct: 180 SAPCV-GRVSAAEHRKIVEDFCDFLSGRTDKLVRQLEARMQQASEELDFETAARLRDDVG 238 Query: 235 AVRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPG----- 288 A+RR EKQ V G D DV A D A V V +R G+V G R + + G Sbjct: 239 ALRRALEKQAVVLGDGTDADVAAFATDELEAAVQVFHVRGGRVRGQRGWVVEKAGDVIDW 298 Query: 289 -------GTELSEVVETFVGQFY-----LQGSQMRT-----LPGEILLDFNLSDKTLLAD 331 G++L +VE F+ QFY L G+ + +P E+L+ D + + Sbjct: 299 AAVDSAAGSDLPLLVEQFLTQFYGEQAALSGAADQEAGSSGVPREVLVPVLPPDAEQVQE 358 Query: 332 SLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS-KLSQQSTVHQRLTALASVLKLP 390 LS L G + ++ RGD+ + + NA AL KL + R AL + + Sbjct: 359 WLSGLRGSAVRLRVPQRGDKKALAETVQRNAMEALQQHKLRRAGDFTSRSAALQGIQEAL 418 Query: 391 EVK----RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI---TGITPGDDYAAMN 443 ++ R+EC DISH G VAS VVF+ P +++YR Y I G DD A++ Sbjct: 419 DLDSAPLRIECVDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGRSDDVASIA 478 Query: 444 QVLRRRY--------------------------GKAIDDSKIPDVILIDGGK-------- 469 +V RRR+ G + D+ V DGG Sbjct: 479 EVTRRRFLRHNRDVGVLRAEAAGADGDQASDTDGDQVSDTDGDQVSGGDGGDLAPEAAID 538 Query: 470 ----------------------GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLE 507 Q+A A V EL ++ ++G+AK LE Sbjct: 539 PQTGRPRRFAYPPNLYVVDGGAPQVAAASAVLDELGIT----DVAVIGLAK------RLE 588 Query: 508 TLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPK 567 ++ E + LP S +L+++Q +RDE+H AI HR KR++ S+L+++ G+G Sbjct: 589 EVWVPGEEDPVILPRTSESLYLLQRVRDEAHRFAITFHRSKRSRRMTASALDSVRGLGET 648 Query: 568 RRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 RR+ L+ + G + L+ ASVEEI VPGI A+ + +L Sbjct: 649 RRKALVTHFGSVAKLKQASVEEITAVPGIGTATAKAVLTAL 689 >UniRef50_A0M672 UvrABC system protein C n=7 Tax=Bacteroidetes RepID=UVRC_GRAFK Length = 597 Score = 321 bits (823), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 193/603 (32%), Positives = 324/603 (53%), Gaps = 39/603 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LKT+ + PGVY+ +D G ++YVGKAK+LKKR++SYF N S + +V +I +I V Sbjct: 10 LKTLPNSPGVYQYFDKNGKILYVGKAKNLKKRVTSYFNKNHDSHRIGVMVKKICEIKHIV 69 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 +ET+ALLLE+N IK +QPR+NV+L+DDK+YP+I + + PR+ R EY+G Sbjct: 70 VASETDALLLENNLIKKHQPRFNVMLKDDKTYPWICIKNERFPRVFPTRRLIKDGSEYYG 129 Query: 131 PFPNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 PF + V L L++ ++ +R C E+ + + + CL+Y +G CLGPC EG E Sbjct: 130 PFTSFKTVNTLLDLIKGLYKLRTCNYDLAEDKIRNGKYKVCLEYHLGNCLGPC-EGFQPE 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EEY +E +R + G L + ++M+ S+ +EFE+A RI+++I + K V Sbjct: 189 EEYNNNIEAIRQIVKGNFKDSLQRFRNQMKQHSEKMEFEDAQRIKNKIDVLENYQAKSTV 248 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 N +++DV V D G V+ L + G ++ S + K E++E + + Sbjct: 249 VNPRINNVDVFSVVSDEGYGYVNFLQLSHGAIIRSHTIEMKKKLDESDRELLELAIVEIR 308 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + S T EI + F + G ++ + GD+ + ++L++ NA Sbjct: 309 QRFSSNST---EIYVPFKVD------------VGEELKIVIPKLGDKKKIVELSQRNAKY 353 Query: 365 ALTSKLSQQST------VHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDA 417 + Q V++ + + L+L E + +ECFD S+ G VA+CVVF Sbjct: 354 FRQERFKQMKIVDPDRHVNRVMAQMKEDLRLGKEPRHIECFDNSNIQGTNPVAACVVFKN 413 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAK 476 P + +YR++NI + DD+A+M +V+ RRY + +++ + +P++I++DGGKGQL+ Sbjct: 414 GKPSKKDYRKFNIKTVEGPDDFASMEEVVFRRYRRLLNEGEDLPELIIVDGGKGQLSSGV 473 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 L + + ++G+AK LE +F+ + L S L +IQ +R+E Sbjct: 474 KALETLGL---RGKIAIIGIAK------RLEEIFYPEDSIPLYLDKKSETLKIIQQLRNE 524 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H I HR KR+K + LE+I+G+G K LL + L+ ++ AS +E+A V G Sbjct: 525 AHRFGITFHRNKRSKTALNTELESIQGIGEKTVVELLTHFRSLKRIKEASQKELADVVGS 584 Query: 597 SQG 599 ++ Sbjct: 585 AKA 587 >UniRef50_C0QWI5 Excinuclease ABC, C subunit n=2 Tax=Brachyspira RepID=C0QWI5_BRAHW Length = 613 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 195/616 (31%), Positives = 320/616 (51%), Gaps = 41/616 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LK + + GVY M D+ +IY+GKAK LKKR+SSYF ++ KT ALV I+ I+ + Sbjct: 13 LKRIPDKSGVYFMKDSKSEIIYIGKAKSLKKRVSSYFNNSNKDAKTTALVEHIRDIEYIL 72 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG---- 126 T E EAL+LE I+ ++P YN+LL+D KS+PFI ++ + PR+ R Sbjct: 73 TENEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAITNEHFPRVIKARNVIDKDNARKY 132 Query: 127 -EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLVS 184 +Y+GP+ + + F +R+C+ R+ RPCL + IG+C PC + L+ Sbjct: 133 KKYYGPYVAAERADNIVKFIIDNFKLRRCKYDFPLKRAIRPCLYHHIGKCTAPCAD-LIK 191 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT-EKQ 243 EE+Y + ++ + L G D+++ +L M ++ LEFE A +RD+I ++ +T E+ Sbjct: 192 EEDYDKTIDDAIMVLEGNVDELVARLKQEMFVHAEKLEFEAAKDLRDKIDLLKYITVEQS 251 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP---------GGTELSE 294 DD+D+IG + G + +L ++ GK+ +++ + P G ++ SE Sbjct: 252 IYIPESDDIDIIGAYGENGNYTIVILSVKGGKLADRKTFSMQSPNDEDYYNENGMSKYSE 311 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR- 353 ++ F Q+Y + +P I DF L+D ++ D L +++GR ++++ D++R Sbjct: 312 ILSAFFTQYYTHAN---LIPASISTDFPLNDVDIIKDYLKQVSGRDVDIKL----DKSRK 364 Query: 354 -YLKLARTNAATALTSK--LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVA 410 + +A NA K + + RL + + K P + +E FDI+H G T+A Sbjct: 365 GLMAIANENAKHLFKEKALIREVPLGITRLQEIFKLKKAPSI--IESFDIAHIQGSYTMA 422 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGK 469 V F YR +N+ +T DD+A++ + + RRY + D++ PD+ILIDGGK Sbjct: 423 GMVRFVNGVSDNKNYRIFNMKTVTGIDDFASIKEAVYRRYKRLRDENLTFPDLILIDGGK 482 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL A ELD+ K P++ K E ++ E L + PA Sbjct: 483 GQLNSAIEALKELDI---KGQPIMALAKK-------FEEIYLPNRNEPVQLSDNEPARLF 532 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 +Q +RDE+H H KKR++ S LE+IEG+G K + L + + ++NAS E Sbjct: 533 LQKVRDETHRWVNSSHGKKRSREMVRSELESIEGIGKKTIEKLYSHFINIDNIKNASFES 592 Query: 590 IAKVPGISQGLAEKIF 605 I +PGIS A I+ Sbjct: 593 IRNIPGISYKAANNIY 608 >UniRef50_D1BHL1 Excinuclease ABC subunit C n=16 Tax=Actinomycetales RepID=D1BHL1_SANKS Length = 703 Score = 320 bits (820), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 225/662 (33%), Positives = 341/662 (51%), Gaps = 66/662 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS--RKTEA 58 M+D + + + PGVYR D G VIYVGKAK+L+ RLSSYF+ +LA+ +T+ Sbjct: 1 MADPATYRPAPGEIPTTPGVYRFRDDHGRVIYVGKAKNLRARLSSYFQ-DLAALHPRTQT 59 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V ++ TV TE EAL LE+++IK Y PR+NV RDDKSYP++ ++ G++ PR + Sbjct: 60 MVTTASSVEWTVVGTEVEALALEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGESVPRAQV 119 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR---NRSRPCLQYQIGRC 174 RG+K YFGPF + +A+RETL LL ++FPIR C VY+ RPCL I +C Sbjct: 120 MRGSKRVGTRYFGPFAHAWAIRETLDLLLRVFPIRTCSAGVYKRAQQSGRPCLLGYIDKC 179 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 PCVE + + A ++ F++G + + +L M A+QNL++E AAR+RD I Sbjct: 180 AAPCVERISKDAHRALADDFC-AFMAGDTAKFMRRLRDEMSMAAQNLDYERAARLRDDIG 238 Query: 235 AVRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 A+ R EK V G D D+ + D A V V +R G++ G R + + + Sbjct: 239 ALERAMEKNAVVLQDGTDADIFALTGDELEAAVQVFHVRGGRIRGQRGWVVEKVEDLTDA 298 Query: 294 EVVETFVGQFYLQGSQMR-----------TLPGEILLDFNLSDKTLLADSLSELAGRKIN 342 E+VE + Q Y + +P E+L+ + + LS L G +++ Sbjct: 299 ELVEHLLQQVYGTADEAAGGDAQAARDSGLVPREVLVPVLPAHLEQMTTWLSGLRGARVD 358 Query: 343 VQTKPRGDRARYLKLARTNAATALT-SKLSQQSTVHQRLTALASVLKLPEVK----RMEC 397 ++ RGD+ NA AL + + + R AL + + ++ R+EC Sbjct: 359 IRVPQRGDKRELAATVLKNAEHALALHRTRRAGDLTNRSLALREIQEALDLDSAPLRIEC 418 Query: 398 FDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGKAI 454 +DIS TMG AS VVF+ ++EYR + + G DD AAM +V+ RR+ + + Sbjct: 419 YDISTTMGTHQAASMVVFEDGLARKSEYRTFGVKGPDGDGARDDTAAMYEVITRRFRRYL 478 Query: 455 ----DDSKI------------------------PDVILIDGGKGQLAQAKNVFAELDVSW 486 D S I P+++++DGG Q+A A A+L + Sbjct: 479 AERSDSSDIELETFGGEVDAETPATDRKRFAYPPNLVVVDGGPPQVAAAAKALADLGI-- 536 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 + L G+AK LE ++ E L S L+++Q +RDE+H AI HR Sbjct: 537 --DDVALCGLAKR------LEEVWVPGEEYPVILQRSSEGLYLLQRVRDEAHRFAITAHR 588 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 KKR K S L+++ G+GP R+ LL++ G L+ LR AS EEIA V G+ Q AE + Sbjct: 589 KKRGKGMTVSELDSVPGLGPARKGALLRHFGSLKRLRAASAEEIATVQGMGQRTAEAVVA 648 Query: 607 SL 608 +L Sbjct: 649 AL 650 >UniRef50_Q72IF0 UvrABC system protein C n=5 Tax=Thermaceae RepID=UVRC_THET2 Length = 630 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 203/537 (37%), Positives = 302/537 (56%), Gaps = 25/537 (4%) Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D T E EALLLE N IK ++P YNVLL+DDK YPF+ L+ + P L + R + Sbjct: 97 LDFIATRDEVEALLLEANLIKAHRPLYNVLLKDDKHYPFLKLTNEPFPTLLVVRRVEEDG 156 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 +Y+GPFP A+R L+ ++FP+R+ + R PCL Y +GRCL PCV G Sbjct: 157 AKYYGPFPEAGALRRIKTLIDRLFPLRKNSGYPMKRRRYPCLNYSMGRCLAPCV-GKADP 215 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV--TEKQ 243 E Y + V V L G+ D +L +L ++M A++ LEFE AA IRDQ++A+R T++Q Sbjct: 216 EAYQEVVRQVEAVLEGRVDGLLQELEAKMREAARRLEFERAAEIRDQMEALRAFFSTDQQ 275 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 DLD +G+A +A V + +R G++LG S + T+ E++ F+ Sbjct: 276 AFDPEMGDLDFLGMARSGALAVVQLYQVRSGRILGRISRVVEKEEATD-EEILWAFLRDH 334 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 YL+ S + L +L LA+ L AGRK+ ++ +G++AR L+LA NA Sbjct: 335 YLEASPLPPLVLLPFPLEDLES---LAELLKRRAGRKVELRVPKKGEKARLLELAERNAR 391 Query: 364 TALTS--KLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGP 420 AL + KL ++ H L AL +L LP R+E +DISH G+ V S VF+ P Sbjct: 392 LALETELKLRERRGEHPALKALQDLLGLPARPWRLEGYDISHLQGQARVFSIAVFEGGRP 451 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 R EYRR + DDYAAM + + RRY ++ D +PD++LIDGG GQ+ A Sbjct: 452 KRQEYRRMRLKAGN--DDYAAMEEGVFRRYTGSLKDLPLPDLLLIDGGVGQVRAAARALE 509 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + + L+G+AKG E + PEG LP PAL ++ H+RDE+H + Sbjct: 510 KAGLRLP-----LVGLAKG-------EEVLVTPEGRELRLPLTHPALQLLIHLRDEAHQN 557 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 + HRK+R++ + L+ I G+G KRR++LL+ GGL+ L+ A +EE+A++PG+S Sbjct: 558 GLRYHRKRRSE-ELFRVLQGIPGIGEKRRRLLLERYGGLRALKEAPLEELARLPGMS 613 >UniRef50_B2RM62 UvrABC system protein C n=4 Tax=Bacteroidetes RepID=UVRC_PORG3 Length = 600 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 203/602 (33%), Positives = 313/602 (51%), Gaps = 41/602 (6%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 L T+ +PG Y+ +D G VIYVGKAK+L++R+SSYF A RKT LV QI+ I Sbjct: 10 ILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYI 69 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 V +E +ALLLE++ IK YQPRYNVLL+D K+YP I + + PR+ R K EYF Sbjct: 70 VVDSEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRDIKKDGSEYF 129 Query: 130 GPFPNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 GP+P + L L+++I+PIR C E + + R R CLQY I +C GPC+ G + Sbjct: 130 GPYPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCKGPCI-GNQT 188 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ- 243 EY V +R L G +++ RM+ S+ L FEEA +++I+ + R K Sbjct: 189 SNEYESNVSEIRDLLRGNLHRLVRMYRDRMQAYSEELRFEEAQICKERIELLERYEAKHT 248 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V D++DV D A ++ + I G + +R Y + ++ E E + Sbjct: 249 VVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGI--NRVY--TLEYRKQIEESKEELLAAA 304 Query: 304 YLQGSQ-MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 + Q + EI+L F+ +T G I RGD+ + L+L+ N Sbjct: 305 ITELRQRFESNAHEIVLPFDTGWQT----------GESITTTIPRRGDKRKLLELSEKNV 354 Query: 363 ATALTSKLSQQSTVHQRLTALASV--------LKLPEVKRMECFDISHTMGEQTVASCVV 414 A KL + ++ AL V L P K +ECFD S+ G VA+CVV Sbjct: 355 AQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPP-KHIECFDNSNIQGTSPVAACVV 413 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLA 473 F P + +YR++++ + +D+A+M +++ R Y + +++ +PD+I++DGGKGQL+ Sbjct: 414 FKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYTRLTEENLPLPDLIVVDGGKGQLS 473 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A +L L+G LE +FF + L S L VIQH+ Sbjct: 474 AAYETLDKLG---------LIGKIPIIGLAERLEEIFFPKDPVPLILDKKSETLKVIQHL 524 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H IG HR R+K + S L+ I+G+G K ++ LL++ ++ +R+A EE++ + Sbjct: 525 RDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAEEEELSAL 584 Query: 594 PG 595 G Sbjct: 585 IG 586 >UniRef50_A6NZD4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZD4_9BACE Length = 616 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 209/590 (35%), Positives = 323/590 (54%), Gaps = 25/590 (4%) Query: 17 QPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS--RKTEALVAQIQQIDVTVTHTE 74 +PGVY M D VIYVGKAK LK R+S YF ++LAS KT A+V+QI DV V +E Sbjct: 16 KPGVYIMQDKHNVVIYVGKAKALKNRVSQYF-ADLASHTEKTRAMVSQIDHFDVIVADSE 74 Query: 75 TEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFP 133 EAL+LE + IK +QP YN+LL+DDK YP+I L+ + +PR ++ A YFGP+ Sbjct: 75 FEALVLESSLIKRHQPHYNILLKDDKGYPYIRLTVNEDYPRFSLANKAADDGARYFGPYG 134 Query: 134 NGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 + + + + L+ + C R+ + RPCL Y +G C G C G+ +E Y Sbjct: 135 SRGSTQGIIDALRAALKLPSCNRRFPRDIGKERPCLNYHMGLCDGYCRFGM-PQERYRDA 193 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-SNTGD 250 ++ L G+ +V ++ + ME A++ L FE+AA +RD+ +A+ + ++Q V + + Sbjct: 194 IDQAIRLLEGQFKEVGDEIQAEMEQAAEELRFEKAAELRDRYRAIELLGKRQKVMAGSLA 253 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 D DV+G +C VL G++ + P E+++VV V Q+Y + +Q Sbjct: 254 DTDVVGFHRGTAKSCFVVLHYVDGELAAKDWDLMETPMEEEIADVVSALVRQYYGERNQ- 312 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 LP +ILL + D+ LA LSE AGR++N+ T RG + ++LA NA + Sbjct: 313 --LPRQILLPCEIEDEVPLARLLSENAGRRVNLITPQRGAKMDLIRLANKNAEEEVARWT 370 Query: 371 SQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 +++ + L LA +LKL + RME +DIS+ + VAS VV+ PL+ +YRR+ Sbjct: 371 TKEERTSKLLELLAKMLKLDKPPMRMESYDISNQGADDIVASMVVYQNARPLKRDYRRFK 430 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAID-DSK---IPDVILIDGGKGQLAQAKNVFAELDVS 485 + + DDYA+M QVL RR+ + +D D K +PD++LIDGG+ A V L +S Sbjct: 431 LKDMDAPDDYASMEQVLTRRFRRYLDGDEKFKDLPDLLLIDGGENHAKVAVKVLETLGLS 490 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 P+ V R L T PEG + + +I I++E+H AI H Sbjct: 491 I----PVFGMVKDDRHRTRALVT----PEGREIGIQANQAVFSLIGQIQEETHRFAIEFH 542 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI-AKVP 594 R+++ + S L+ I GVG KRR LLK+ ++ ++ A++EE+ A VP Sbjct: 543 RQQQNQRVKGSVLDKIPGVGEKRRADLLKHFKSVKNIKAATLEELEAAVP 592 >UniRef50_B0SB16 UvrABC system protein C n=6 Tax=Leptospira RepID=UVRC_LEPBA Length = 614 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 203/611 (33%), Positives = 333/611 (54%), Gaps = 28/611 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 +K + S PG Y + G VIYVGKA L+ R+ SY N RKT AL ++ +D Sbjct: 14 IKNLGSLPGCYLWKNELGQVIYVGKALKLQSRVRSYLNPNQKDRKTRALFVELYDLDWIA 73 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T TE EALLLE IK Y P++NV L+DDK YPF+ +S + +P + + R K YF Sbjct: 74 TGTEKEALLLEATLIKKYNPKFNVRLKDDKKYPFLCVSTSEDYPMVFLTRKVKDNGDRYF 133 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLVSEEEY 188 GPF + A R+TL L+ +IFPIR+ + + + RPCL + +GRCLGPC +G V+++ Y Sbjct: 134 GPFTDVKAARDTLELIHRIFPIRKTKLKLPLPKPQRPCLNFHMGRCLGPC-QGNVTKDTY 192 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSN 247 ++ V+ + FL GK ++++ L M AS +E+E A ++ +I+ + ++ EKQ VS Sbjct: 193 SELVDEILRFLEGKKERLVADLKKAMMDASSKMEYERAGFLKQRIEKINQLREKQTVVSM 252 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 G D D++G++ + +L +R G++ G +S+ ++ E +F+ +YL Sbjct: 253 DGGDEDILGISKREDEGQILILEVRGGRLEGKKSFPLTGLSFSDDEEAFTSFLRDYYL-- 310 Query: 308 SQMRTLPGEILLDFNLS-DKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + LP + L + + + +++ E G I ++ G + L+LA NA +L Sbjct: 311 -NVTVLPSVVYLPTSAKGNYDVFLEAILEKFGTSIKLKFPEMGPKKSLLRLAEKNADLSL 369 Query: 367 T-----SKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGP 420 T +KL Q+ + L L LP + R +EC+DISH G VAS V+F P Sbjct: 370 TERILATKLRDQTVA---MKELQEKLNLPTLPRTIECYDISHFQGSLPVASGVMFVEGKP 426 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVF 479 + YR Y + G +D +++V+ RR +++ + +PD+I+IDGG QL++A Sbjct: 427 YKPGYRHYKMRGYEGINDPGMIHEVIARRLSHLVNEEEPLPDLIVIDGGLTQLSRA---- 482 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 AE + D H ++G+AK E ++F E +S SP + +++++RDE+H Sbjct: 483 AEAANALDLGHIPMVGLAKKR------EEIYFPGEKHPYSFDQHSPMMRLLRNLRDEAHR 536 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 + R +R K S L+ I +G RR+ +L Y + + +A+ +E+ KV GI Sbjct: 537 FGVTFQRLQRKKKALKSILDDIPDIGASRRKSILMYFQAKKKVTDATRQELEKVQGIGPV 596 Query: 600 LAEKIFWSLKH 610 LAEKIF ++++ Sbjct: 597 LAEKIFTNIQN 607 >UniRef50_C7N8N1 Excinuclease ABC, C subunit n=12 Tax=Fusobacteriaceae RepID=C7N8N1_LEPBD Length = 594 Score = 317 bits (813), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 200/600 (33%), Positives = 319/600 (53%), Gaps = 26/600 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M ++ + K + + PGVY M + G +IYVGKAK+L+ R+ SYF + N ++KT L Sbjct: 1 MEEEIKSPIKYKDIPTHPGVYLMKNERGKIIYVGKAKNLQNRVKSYFMNINSHNQKTMEL 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V I+ I+ + +E EAL+LE+N IK +P+YN+LL+D+K+YP+I + + P++ + R Sbjct: 61 VKNIKDIEFFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFTKEKFPKVEIVR 120 Query: 120 GAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 K + EYFGP+P G + L KIFP+R C S+ + ++PCL+Y + C P Sbjct: 121 STKKLNENAEYFGPYPMGIFF--AMKTLLKIFPMRDCNRSMDK-ITKPCLKYYMKTCPAP 177 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C + E+EY+ V+ + FL G D+V+ L SRM+ S +EFE A R+++ ++ Sbjct: 178 CKYKDI-EDEYSTNVKNFKNFLKGHSDKVIEMLESRMKKFSDEMEFERAINEREKLAVLK 236 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 R+ E Q + + + D DV + VL IR+GKV+ + E + Sbjct: 237 RMLETQIIEYSKEIDEDVFVFEEKRENVFLCVLNIREGKVINKNDIIISLERSQE-ENLF 295 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRK-INVQ-TKPRGDRARY 354 E + +Y + R +P I+ D LL +++ K I + K R + Sbjct: 296 ERLITSYY----EKRNIPKHIICDERFMSSELLIKEWAKIEKHKEIKLHFPKINSRRLQL 351 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 L++ N + ++ V + L L L+L + R+ECFDIS+ G+ VA+ Sbjct: 352 LEMGYLNLREEVDKYYRKRRMVQEGLRNLKKELRLKSLPYRIECFDISNIQGKDAVAAMT 411 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 V EYR + IT DD+ M + L RRY K I++ K+P++ILIDGGKGQL Sbjct: 412 VALDGETTPKEYRHFKITVKDTPDDFLMMREALTRRYSK-IENDKMPNLILIDGGKGQLG 470 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A +V +L H ++G+AK E +F E E + L ++Q + Sbjct: 471 VAVDVLEKL---GKIEHTDVIGIAKRE------EEIFKSYESEPYLFEKTDETLKILQRL 521 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H I HRK R+K S+L+ I G+GPKR++ L+K G ++ +RNA++EE+ +V Sbjct: 522 RDEAHRFGITHHRKLRSKRNVKSALDDITGIGPKRKKELIKKFGLIKNIRNATLEELMEV 581 >UniRef50_A9WT69 UvrABC system protein C n=2 Tax=Actinobacteria (class) RepID=UVRC_RENSM Length = 655 Score = 317 bits (813), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 209/636 (32%), Positives = 335/636 (52%), Gaps = 52/636 (8%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQIQQIDVTVTH 72 + + PGVYR D G VIYVGKAK+L+ RL+SYF + + KT A+V + T+ Sbjct: 14 IPTDPGVYRFRDEHGRVIYVGKAKNLRSRLTSYFANPVTLLPKTFAMVHTATSVQWTIVG 73 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGP 131 +E EAL LE+ +IK + PRYN+ RDDKSYP++ ++ G+ PR+ + RG + YFGP Sbjct: 74 SELEALQLEYTWIKEFAPRYNLAFRDDKSYPYLAVTMGEEFPRVQVMRGERRKGTRYFGP 133 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYR---NRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 F G A+RET+ L ++FP+R C S ++ RPCL I +C PCV G VS EE+ Sbjct: 134 FTAG-AIRETVDTLLRVFPVRTCSPSTFKRAQQSGRPCLLGYIDKCAVPCV-GRVSAEEH 191 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 + F+ G+ + + L +M A L++E AAR+RD + A+R+V E+ V Sbjct: 192 RTLADEFCAFMGGEAKRFIGTLEKQMAEAVAELDYERAARLRDDVIALRKVFERNAVVLA 251 Query: 249 GD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY-LQ 306 D D+ V D A V V +R G++ G R + + +E++E + Q Y + Sbjct: 252 EDTSADIFAVHQDELEAAVQVFNVRSGRIRGQRGWVVEKVEDLVPAELIEHLLQQVYGDE 311 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + +P +IL+ ++ L + LS L G K+ ++ RGD+A ++ NA A+ Sbjct: 312 RADEDRIPRQILVPELPANVEQLTEWLSGLRGAKVEIKVPQRGDKAALMETVALNAEQAM 371 Query: 367 TSKLSQQS-TVHQRLTALASV----LKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 S+++ + QR AL + + R+EC+DISH G VAS VV + Sbjct: 372 KLHKSKRAGDLTQRSLALRELQDALDLPLPLLRIECYDISHVQGTNVVASMVVVEDGIAK 431 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------------------- 458 ++EYRR++ITG DD A+M V+ RR+ + + + Sbjct: 432 KSEYRRFSITGDAARDDTASMYDVITRRFRNYLQEQQDRAEALTRPVEFEISDAAETAPK 491 Query: 459 -----IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP 513 P+++++DGG Q+A A+L ++ ++G+AK LE ++ Sbjct: 492 SKFAYPPNLVVVDGGPPQVAATSRALADLGIT----DVAVIGLAK------RLEEVWLPE 541 Query: 514 EGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLL 573 + LP S L+++Q IRDE+H AI HR+KR K S L+ + G+G +++ LL Sbjct: 542 DDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKSMTASLLDGVPGLGESKQKALL 601 Query: 574 KYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 K+ G ++ L++A V +I++V GI LAE + +L+ Sbjct: 602 KHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSALE 637 >UniRef50_C9RQJ8 Excinuclease ABC, C subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQJ8_FIBSS Length = 623 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 204/597 (34%), Positives = 323/597 (54%), Gaps = 29/597 (4%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYF--RSNLASRKTEALVAQIQQIDVTVTHTET 75 PGVY M +A G +IY+GKAK LK R+SSYF + R ++ I+ I+ +T +ET Sbjct: 19 PGVYIMKNAQGKIIYIGKAKVLKNRVSSYFDGSDHAGHRAATLMLPYIRDIEWIITESET 78 Query: 76 EALLLEHNYIKLYQPRYNVLLRDDKSYPFI-FLSGDTHPRLAMHRGAKHAKGEYFGPFPN 134 EAL+LE N I+ + P+YNVLL+DDK +P++ F + PRL + R K Y+GP+ + Sbjct: 79 EALILEANLIRKHTPKYNVLLKDDKHFPYLAFSVNEPFPRLFLSRSVKKDGCLYYGPYMS 138 Query: 135 GYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLVSEEEYAQQVE 193 +R+ + ++F IR+C+ + NR RPCL Y IGRC PC GLV+ EEY ++V Sbjct: 139 SRMIRQLQDIAARLFQIRECKLKLPLNRPVRPCLNYHIGRCGAPCA-GLVTREEYQKKVA 197 Query: 194 YVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT--EKQFVSNTGDD 251 ++ L GK D ++ M AS+ ++FE AA+ RD IQA++ + +K VS+ Sbjct: 198 QTQMLLGGKRDDLIDLWEREMLEASERMDFETAAKKRDAIQALKATSAHQKTDVSDASLC 257 Query: 252 LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMR 311 +DV+ + + MA + R G + G R Y + + +E+ V Q+Y+ + Sbjct: 258 VDVLSLKRNGTMAAAVIFEYRNGVLCGRRHYRLECKLEDDETEIFRQMVVQWYMD---VE 314 Query: 312 TLPGEILLDF----NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 +PGEI D ++S++ + +L+ K+ + RG++ +LKLA NA L Sbjct: 315 FIPGEIATDVPLPTDMSERLSIEQALASKTTHKVVLTNPQRGEKLGFLKLASANADMILV 374 Query: 368 ---SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 +++ + S + + L VL L + R+EC DISH G TVAS V F P ++ Sbjct: 375 EMRAEVQKYSEIDSSVFELQKVLGLKKTPFRIECVDISHLSGTNTVASLVAFKNGRPDKS 434 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAEL 482 YR++ I +T DD+A+M +V+ RR + ++ +PD+ + DGGKGQ+ + EL Sbjct: 435 NYRKFIIKTVTGVDDFASMREVMTRRIRRLEEEGIPMPDLWVCDGGKGQVDATMQILKEL 494 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 DK+ P L+G+AK LE + F + + L SPAL ++Q+ RDE+H AI Sbjct: 495 --GHDKDLP-LIGLAK------RLEEIVFPDDRKSIVLHRTSPALKLLQNARDEAHRFAI 545 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 R KR K L+ + GVG + R +L + +A +E+I + G +G Sbjct: 546 TYQRSKRKKDLEVEWLK-MPGVGHETRIKILSKYKSAEAFMDAPLEDIIDLLGKVRG 601 >UniRef50_Q2Z008 Exconuclease ABC subunit C (Fragment) n=1 Tax=uncultured Chloroflexi bacterium RepID=Q2Z008_9CHLR Length = 500 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 183/499 (36%), Positives = 289/499 (57%), Gaps = 35/499 (7%) Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 Y+GP+ + +AV +TL +L++IFP C+ + +R CL Y I C PC+ G++++ Sbjct: 8 YYGPYTSVWAVHQTLDVLRRIFPYLTCDREITGGDARACLYYDIKLCTAPCI-GMINQAG 66 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVS 246 Y Q ++ + FL G+ + ++T+L + M A++ L FE AA +RDQIQA+ RV EKQ VS Sbjct: 67 YRQMIDDLGQFLEGRTEPIVTRLRADMNQAAEALNFERAAALRDQIQAIERVVEKQKVVS 126 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 + D DV+ +A G ACV V FIR GK++G + + + ++V+ F+ QFY Sbjct: 127 SDYIDSDVVAMARTDGEACVQVFFIRSGKLIGREYFLMEGAAESPDADVITGFLKQFY-- 184 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSL-SELAGRKINVQTKPRGDRARYLKLARTNAATA 365 Q +P E+LL + + ++ + L S G+K+ + G + +++A NA+ Sbjct: 185 -DQAPNVPPEVLLPTEIEEMNIIREWLNSRRGGQKVELHIPRLGPQQELMQMAAENASAT 243 Query: 366 LTSKLSQ-QSTVHQRLTALA---SVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGP 420 L++ +Q Q+ H++ ALA + L LPE R+EC+DIS+T G V S VVF+ P Sbjct: 244 LSALQAQWQADTHRQEQALAELQTALDLPEAPNRIECYDISNTQGTAAVGSMVVFEQGVP 303 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRY-------------GKAIDD--SKIPDVILI 465 ++ YRR+NI ++ DD+A+M +VL RR+ GK D S +PD++L+ Sbjct: 304 KKSLYRRFNIRSVSGPDDFASMEEVLTRRFSRWQATQDASQAPGKKPDPAFSLLPDLLLV 363 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGGKGQL++A+ V +++ L +AK E LF + E LP S Sbjct: 364 DGGKGQLSRAEAVLERFELT---GRFFLASLAKHN------EELFIPGQSESLLLPRHSQ 414 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 AL+++Q +RDE+H +AI HR++R K S L+T+ G+GP RR+ LL + GGLQ +R A Sbjct: 415 ALYLVQRVRDEAHRYAITSHRQRRDKAGIASQLDTVPGIGPMRRKALLAHFGGLQQIRQA 474 Query: 586 SVEEIAKVPGISQGLAEKI 604 S EE+ +PGI+ LA+ I Sbjct: 475 STEELLTIPGITIKLAQAI 493 >UniRef50_Q8REL0 UvrABC system protein C n=10 Tax=Bacteria RepID=UVRC_FUSNN Length = 589 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 199/590 (33%), Positives = 310/590 (52%), Gaps = 32/590 (5%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHT 73 + GVY M VIYVGKAK+LK R+SSYF S KT LV I+ I+ +T+T Sbjct: 8 IPESSGVYLM-KKNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTNT 66 Query: 74 ETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH---AKGEYFG 130 E +ALLLE+N IK Y P+YN+LL+D+K+YPFI +S + + + R K GEYFG Sbjct: 67 EIDALLLENNLIKKYSPKYNILLKDEKTYPFIKISKEDFSSIKIVRTTKALDIKSGEYFG 126 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+P Y +L K+F IR C + + RPCL+Y + C GPCV + +EEY + Sbjct: 127 PYP--YGAWRLKNILMKLFKIRDCNRDMKKTSPRPCLKYYMKSCTGPCVYKDI-KEEYNK 183 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS---N 247 VE ++ L G +++ +L + M ASQ+++FE++ R+QI+ ++ + Q + Sbjct: 184 DVENLKQVLKGNTSKLINELTALMNKASQDMDFEKSIIYREQIKELKSIASSQIIQYERE 243 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL-SEVVETFVGQFYLQ 306 +D+ V D C VL +R GK+LG S +L +++ + ++ Sbjct: 244 LDEDIFVFKTILDKAFIC--VLNMRDGKILGKSS------TSIDLKNKITDNIYEAIFMS 295 Query: 307 GSQMRTLPGEILLDFNLSDK-TLLADSLSELAGRKINVQ-TKPRGDRARYLKLARTNAAT 364 LP ++LD ++ +++ +L+ +K K + R L +A N Sbjct: 296 YYSKHILPKSLVLDAEYENELSVVVKALTIEDSKKKEFHFPKIKSRRKELLDMAYKNLER 355 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRA 423 + S S++ T+ + + L +L L +++ECFDIS+ G+ VAS V R Sbjct: 356 DIESYFSKKDTIEKGIKDLHDILGLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARK 415 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 EYR++ I DD++ M +V+ RRY K + D + PDVILIDGG GQ+ A V L Sbjct: 416 EYRKFKIRCKDTPDDFSMMREVIERRYSK-LPDIEFPDVILIDGGLGQINSAGEVLKRL- 473 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 K H L + A+R E ++ E + L D AL + Q +RDE+H I Sbjct: 474 ---GKIH--LSELLSLAERN---EEIYKYGESIPYVLSKDMEALKIFQRVRDEAHRFGIT 525 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 HRK R+K +S L+ I+G+G RR+ LL G + ++ AS+EE+ ++ Sbjct: 526 YHRKIRSKRIISSELDKIDGIGEVRRRKLLTKFGSISAIKKASIEELKEI 575 >UniRef50_D2LI59 Excinuclease ABC, C subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LI59_RHOVA Length = 689 Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 175/456 (38%), Positives = 272/456 (59%), Gaps = 10/456 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 ++K + + PGVYRM D G VIYVGKA++LK R+ +Y R + + A++ ++ Sbjct: 33 YVKHLGTGPGVYRMVDLAGEVIYVGKARNLKNRVQNYTRMGGHTNRIAAMIRATATMEFV 92 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRGAKHAKGEY 128 T TE EALLLE N IK ++PRYNV RDDKS+P+I + D ++A HRGA+ KG+Y Sbjct: 93 NTRTEAEALLLEANLIKRFKPRYNVSFRDDKSFPYIVIRRDQEAAQIAKHRGARTVKGDY 152 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF + AV T+ LQ+ F +R C +SVY +R+RPCL +QI RC GPC + ++Y Sbjct: 153 FGPFASAGAVNRTINTLQRAFLLRTCADSVYDSRTRPCLLFQIKRCAGPCTRE-IPLDDY 211 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 ++ V+ FLSGK D V +L + ME A++ LEFE AA+ R+++ A+ V Q ++ Sbjct: 212 SKLVDEATAFLSGKTDAVQRKLNTLMEEAAEALEFERAAKYRNRLWALAHVQAHQGINPK 271 Query: 249 G-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 G ++ DV +A G C+ V F R G+ G+R+YFP+ +EV+ +F+ QFY Sbjct: 272 GVEEADVFAIAQQGGQTCIEVFFFRSGQNWGNRAYFPRADKSLSPAEVLGSFISQFY--- 328 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P + L + +++L++++LS GRK++V T RG++ + A NA AL Sbjct: 329 -DDKLVPRCVFLSEEVPEQSLISEALSTKLGRKVDVVTPRRGEKRELVDYAHQNAREALG 387 Query: 368 SKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 KL++ ++ + L +A V L V +R+E +D SH MG V +V G + YR Sbjct: 388 RKLAETTSNARLLAGVAQVFGLERVPRRIEVYDNSHIMGTNAVGGMIVAGPEGFAKNHYR 447 Query: 427 RYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSKIP 460 ++NI +TPGDD+ M +VL RR+ + + + +P Sbjct: 448 KFNIRTADLTPGDDFGMMREVLTRRFKRLLKEHGLP 483 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 8/149 (5%) Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLL-GVAKGADRKAGLETLFFEPEGEGF 518 PD++LIDGG GQL+ A+ V AEL + H L + G+AKG DR AG E FF P F Sbjct: 542 PDLLLIDGGAGQLSAAREVLAELGL-----HGLAIAGIAKGPDRNAGRER-FFMPGKPPF 595 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 SLP + P L+ +Q +RDE+H AIG HR KR K + L+ I G+GP R++ LLK+ G Sbjct: 596 SLPLNDPVLYFVQRLRDEAHRFAIGSHRAKRKKAMTENELDGIPGIGPTRKRALLKHFGS 655 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIF-W 606 + + A + ++ V GIS +A++I+ W Sbjct: 656 AKAVSRAGLSDLRAVDGISAAMAQQIYDW 684 >UniRef50_Q2S280 UvrABC system protein C n=1 Tax=Salinibacter ruber DSM 13855 RepID=UVRC_SALRD Length = 633 Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 203/612 (33%), Positives = 328/612 (53%), Gaps = 36/612 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDVT 69 L + + PGVY+ D +V+YVGKAK+L+ R+ +YF+ S + E +V + +D+ Sbjct: 16 LDALPTDPGVYKFLDDEESVLYVGKAKNLRNRVRTYFQQSRQRDGRIEVMVQKAVDVDII 75 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 VT TE EAL+LE+N IK QPRYNV LRDDK+YP+I + + PR+ R K EYF Sbjct: 76 VTDTEAEALILENNQIKELQPRYNVNLRDDKTYPYICIKNERFPRVFKTRTVKQDGSEYF 135 Query: 130 GPFPNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 GP+ + + + ++ +F +R C E + + CLQ+ I C PCV G S Sbjct: 136 GPYADVSKMNSMMDAIRSVFQLRTCSLDLTEEKIEAGKYDVCLQHHIDNCKAPCV-GKQS 194 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ- 243 E +Y + +E V+ L+G+ +++ L M+ S FEEAAR+RDQ++A++ +++Q Sbjct: 195 EADYMETIEQVKKLLNGQTQELMDLLKDEMQRQSDAHNFEEAARLRDQVKALKDYSQQQK 254 Query: 244 FVSNTGDDLDVIG--VAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 VS D DV V D + C + +R+GK++G R F + +E++ + V Sbjct: 255 VVSQDFADRDVFALHVERDEDIGCGVLFQVREGKMIGKRHKFLRSVEERSDAELILSLVE 314 Query: 302 QFYLQGSQMRTLPGEILL-----DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 +Y + + P E+LL D D L + L + G ++ ++ RG++A ++ Sbjct: 315 NYYAEAN---FYPEEVLLSHDPNDHPAQDTHALEELLRQEQGHQVPIKVPQRGEKASLVR 371 Query: 357 LARTNAATALTSKLSQQ-----STVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVA 410 +A +NA + +QQ + + + + AL L + +R++ D+SH G++TVA Sbjct: 372 MATSNAKLQVGEWKTQQMKRERNRIPESIKALGEALNMEAPPRRVDGIDVSHHGGKETVA 431 Query: 411 SCVVFDANGPLRAEYRRYNITGI---TPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDG 467 SCVVF P +++YR Y I TP D A V RR +D PD+++IDG Sbjct: 432 SCVVFTDATPRKSDYRTYKIRSTEEGTPDDYKAMREVVRRRYRRMVEEDGPWPDLVVIDG 491 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL+ A + E+ ++D+ P ++G+AK LE ++ + + L DSPAL Sbjct: 492 GKGQLSSAVEMLKEVG-AFDR-FP-VIGLAK------RLEEVYRPGDSDPVFLAKDSPAL 542 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 ++Q +RDE+H A+ RK+R K S L I G+GPK + LL G ++ A Sbjct: 543 QLLQKVRDEAHRFAVTYQRKRRKKKTLQSELLDIHGIGPKTAKKLLGEFGSAAKVKEADE 602 Query: 588 EEIAKVPGISQG 599 E +A+V G ++ Sbjct: 603 EALAEVVGPAKA 614 >UniRef50_C5CDH0 Excinuclease ABC, C subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CDH0_KOSOT Length = 574 Score = 311 bits (796), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 213/615 (34%), Positives = 323/615 (52%), Gaps = 47/615 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR--KTEA 58 M ++ AK ++ + +PG+Y + G +IY+GKAK L+KR+SSYFR++ + KT Sbjct: 1 MKNKLLAK--VRELPEKPGIYLFKNKKGEIIYIGKAKKLRKRVSSYFRASTHEQNGKTRE 58 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH 118 L +I ++ V TE EALLLE N I ++P++NVLL+D K YP+IF+S D P +++ Sbjct: 59 LYQEIDDLEFIVVPTEKEALLLEANLIYQHKPKFNVLLKDSKRYPYIFISDDEFPYISIT 118 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R + KG Y+GP+ + VR L LLQ+IF +R C ++ + RPC Y + C P Sbjct: 119 R-IRDRKGFYYGPYTSITLVRNLLDLLQRIFKLRSCMDNRDCKKGRPCFLYHLKMCSAPL 177 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G +S EY +QV FL GK V QL M+ ++NL+FE+A IRD + + R Sbjct: 178 A-GEISHAEYQKQVRGFMDFLDGKTLDVRRQLERSMQRLAENLQFEKAKEIRDVLVSFDR 236 Query: 239 VTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 + KQ V + + + D+G+ V +L +R G +LG ++ P G ++ Sbjct: 237 LYSKQAV-DVSESYTADFIVLDSGI--VTLLEVRGGLLLGKLTF--DFPEGN-----LKD 286 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR-ARYLKL 357 F+ QFY G R P I+ N S+ +A+ + PR + R L + Sbjct: 287 FIQQFYY-GQNHRKPPVLIVPGLNKSEIKEIAEDFEYIGN--------PRSEEEKRLLLI 337 Query: 358 ARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRM-ECFDISHTMGEQTVASCVVFD 416 A N L +L V Q L +L L ++ R+ E DISHT G TVAS VVF Sbjct: 338 ASDNTIEELRIRLK----VQQSLKMAKELLGLNKIPRIIEGVDISHTQGVYTVASVVVFR 393 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAK 476 P + YRRY IT + +D+ A+ ++RRRY K PD++L+DGG QLA + Sbjct: 394 NGQPDKISYRRYRITELNEPNDFEALKILMRRRYSK----HPPPDLLLVDGGAPQLAAVR 449 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEG-FSLPPDSPALHVIQHIRD 535 EL + +G+AK + E +F P+ G L PD P L ++ IRD Sbjct: 450 ESLEELGLKKID----FIGLAKEEE-----EIVF--PDNRGRLKLSPDHPVLRLLTTIRD 498 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 ESH A+ HR R + +TS L+ I G+GPKR++ L++ G + ++ AS EE+ KV Sbjct: 499 ESHRFAVNYHRVLRERKFSTSRLDDIPGIGPKRKRALVRAFGSVTNIKKASKEELMKVIK 558 Query: 596 ISQGLAEKIFWSLKH 610 + + + + W+ K Sbjct: 559 NRKVVEQILAWTKKQ 573 >UniRef50_C2MAD2 Excinuclease ABC subunit C n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MAD2_9PORP Length = 602 Score = 311 bits (796), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 208/613 (33%), Positives = 323/613 (52%), Gaps = 50/613 (8%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + KA L T+ +PG Y+ + GT+IYVGKAK+L+ R+SSYF ++ + KT LV++I+Q Sbjct: 5 EIKAILPTIPQEPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKNPKTTRLVSEIRQ 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ V +TE EAL+LE+N IK + P+YN+LL+DDKSYP I ++ + PR+ R + K Sbjct: 65 LEYFVVNTEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVITDEPFPRIFATR-KEVGK 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENS-----VYRNRSRPCLQYQIGRCLGPCVE 180 G+YFGP+PN + L+ ++ +R C + V R CLQY I +C GPC + Sbjct: 124 GDYFGPYPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPC-Q 182 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G VS EEY V+ R L G+ ++ + + M S+ LEFE A + R I+ +RR + Sbjct: 183 GFVSAEEYDHSVQLARRILKGEISILIEEEVEEMNRMSERLEFERAEQHRQNIEVLRRYS 242 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGK-VLGSRSYFPKVPGGTE---LSEVV 296 K V+ + DV D V ++ +R G VL F K + L+ ++ Sbjct: 243 GKHVVAPNIREADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLAYLI 302 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 E +F GS R + +LA+ E + RG++ L Sbjct: 303 EELRQRF---GSTAR--------------EVILAEP-GEWESDSYRITVPQRGEKKHLLD 344 Query: 357 LARTNAATALTSKLSQQSTVH--QRLTALASVLK-------LPEVKRMECFDISHTMGEQ 407 LA+ N + +Q ++ QR T L + +K LP + MECFD S+ G Sbjct: 345 LAQVNVSGYRWDCYKRQEKLNPEQRATRLLTTMKKDLGIDRLP--RHMECFDNSNIQGTN 402 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILID 466 VA+CVVF P ++EYR++++ + DDY M +++ RRY + +D+ + +PD+I+ID Sbjct: 403 PVAACVVFKNGKPAKSEYRKFHVKTVVGADDYRTMREIIYRRYRRMLDEGQSLPDLIIID 462 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL A + ELD+ +DK + G+A+ E L+ E E L S Sbjct: 463 GGKGQLHVACDTLKELDI-YDK--VCVFGLAE------RFEELYRPGESEPLVLDRRSET 513 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L V+ HIRDE+H I HR R+K + S L+ I G+G + ++ L++ Q + AS Sbjct: 514 LKVVCHIRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLMRAFKTPQRVVKAS 573 Query: 587 VEEIAKVPGISQG 599 E+ + G S+G Sbjct: 574 RAELIETLGASKG 586 >UniRef50_C2KQB5 Excinuclease ABC subunit C n=2 Tax=Mobiluncus mulieris RepID=C2KQB5_9ACTO Length = 702 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 224/689 (32%), Positives = 337/689 (48%), Gaps = 109/689 (15%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF--RSNLASRKTEALVAQIQQIDVTVT 71 + + PGVYR DA G VIYVGKAK+L+ RL+SYF + L R T +VA + + V Sbjct: 12 IPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPR-TAKMVATAESVSWVVV 70 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFG 130 +E EAL LE+ +IK Y P++NV+ +DDKSYP+ ++ PR+ + R A YFG Sbjct: 71 GSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVRYFG 130 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 P+ +A+R+T LL+ +FP+R C + V+ R R CL+ IGRC PC+ G +S E Sbjct: 131 PYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCI-GRISAAE 189 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVS 246 + + V F+SG + +L L ++M S+ FEEAA+ RDQ++A+R+V EK V Sbjct: 190 HRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAVVM 249 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 +T D D+ +A D V V ++R G++ G R + + + SE++ + Q Y Q Sbjct: 250 DTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSFALEQIYGQ 309 Query: 307 ---------GSQMRT--------------LPGEILLDFNLSDKTLLADSLSELAGRKINV 343 G+Q+R +P +IL+ +D L LS L G K+ + Sbjct: 310 VAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKVTI 369 Query: 344 QTKPRGDRARYLKLARTNAATAL-TSKLSQQSTVHQR---LTALASVLKLPEVKRMECFD 399 + RG + ++ NA L K + S + QR L L L + R+EC+D Sbjct: 370 RRPQRGMKREAVERVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPLRVECYD 429 Query: 400 ISHTMGEQTVASCVVFDANGPLRAEYRRYNITGIT---PGDDYAAMNQVLRRRYGKAI-D 455 ISHT G V S VVF+ P + YR++ + G DD AMN+VLRRR+ + I + Sbjct: 430 ISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERLIQE 489 Query: 456 DSKIPDVI---LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFE 512 ++ P + + D G A E V+ D ++GA+ G E L + Sbjct: 490 ETPAPHEVEPAVTDRGD----PAARYVGESSVAGDVGD----AASRGANPNPG-EGLSGD 540 Query: 513 PEGE-----GFSLPPD-------SPALH-------------------------------- 528 P GE FS PD P +H Sbjct: 541 PSGEIREPKRFSYRPDLVVVDGALPQVHAARAAMDAAGVWDIPVVGLAKRLEEVWTVDSD 600 Query: 529 -------------VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKY 575 ++Q++RDESH AI HRKKR + S L+ I G+G +++ LLK+ Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKH 660 Query: 576 MGGLQGLRNASVEEIAKVPGISQGLAEKI 604 G L+ +R AS E+I+KVPG + LA ++ Sbjct: 661 FGSLRQIRRASAEDISKVPGFGRILATQV 689 >UniRef50_Q5LIY7 UvrABC system protein C n=26 Tax=Bacteroidetes RepID=UVRC_BACFN Length = 608 Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 191/610 (31%), Positives = 327/610 (53%), Gaps = 43/610 (7%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K + + +PG+Y+ +A GT+IYVGKAK+LK+R+ SYF KT LV++I I Sbjct: 14 KGIVSNLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADIR 73 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 V ++E +ALLLE+N IK Y+PRYNVLL+DDK+YP I + + PR+ R Sbjct: 74 YIVVNSEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQNEYFPRVFKTRRIIRNGSS 133 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGPCVEGL 182 Y+GP+ + ++ L L++ ++P+R C ++ + CL+Y I C GPC+ GL Sbjct: 134 YYGPYSHSPSMHAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCI-GL 192 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 S+EEY + + ++ L G ++ L RM+ + ++FEEA +++++ + K Sbjct: 193 QSQEEYLKNIAEIKEILKGNTQEISRLLYQRMQDLAAEMKFEEAQKVKEKYALIENYRSK 252 Query: 243 -QFVSNTGDDLDVIGVAFDA-GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 + VS+ ++DV + D A ++ L I G + + ++ K +L+E E + Sbjct: 253 SEVVSSVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYK----KKLNETKEELL 308 Query: 301 GQFYLQGSQ-MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 ++ + ++ EI++ F++ E+ + RGD+ + L+L+ Sbjct: 309 TLGIIEMRERYKSASREIIVPFDI-----------EIELNDVTFTIPQRGDKKKLLELSL 357 Query: 360 TNAATALTSKLSQQSTVH--QRLTALASVL-------KLPEVKRMECFDISHTMGEQTVA 410 N ++ Q ++ QR L + +LP ++ECFD S+ G VA Sbjct: 358 LNVKQYKADRMKQAEKLNPEQRSMRLMKEIQQELHLDRLP--MQIECFDNSNIQGTDAVA 415 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGK 469 +CVVF P +++YR+YNI + DDYA+M +V+RRRY +AI ++S +PD+I+ DGGK Sbjct: 416 ACVVFKKAKPSKSDYRKYNIKTVVGADDYASMKEVVRRRYQRAIEEESPLPDLIITDGGK 475 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQ+ + V EL + + G+AK DRK + F + + SP + Sbjct: 476 GQMEVVRQVMEELQLDIP-----IAGLAK--DRKHRTSEVLFGFPPQTIGIKQHSPLFRL 528 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 ++ I+DE H AI HR KR+K + S+L+ I+G+G K + LLK ++ ++ A++EE Sbjct: 529 LEQIQDEVHRFAITFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEATIEE 588 Query: 590 IAKVPGISQG 599 ++ + G S+ Sbjct: 589 VSAIIGESKA 598 >UniRef50_D2RRA5 Excinuclease ABC, C subunit n=2 Tax=Halobacteriaceae RepID=D2RRA5_9EURY Length = 597 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 212/623 (34%), Positives = 316/623 (50%), Gaps = 70/623 (11%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 K++ +PGVY+ + A GT +YVGKA DL+ R+ SY A + +V + +I++ VT Sbjct: 11 KSLPREPGVYQ-FRAEGTTLYVGKAVDLRSRVRSYADPRTA--RIRRMVDRADEIEIAVT 67 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE---- 127 TET+ALLLE N IK +QPRYNV L+DDKSYP + L+ PR+ + R GE Sbjct: 68 DTETQALLLEANLIKRHQPRYNVRLKDDKSYPMVQLTDHEAPRIEITR---DPDGEAQGA 124 Query: 128 ------------YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCL 175 FGPF N V + L++ + +R C + Y R RPCL Y++G C Sbjct: 125 SSASGGAASGPTVFGPFTNKGQVETVVKALRETYGVRGCSDHKYSGRDRPCLDYEMGLCT 184 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC + E YAQ V V F G+ + L ME A+++ FE AA +RD+++ Sbjct: 185 APCTRE-IDLESYAQDVTAVERFFEGETGILADPLRREMEAAAEDQNFERAANLRDRLET 243 Query: 236 VRRVTEK--QFVSNTGDD--LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP---- 287 V + + V + GD+ +DV+GVA + A V L +GK++ + + P Sbjct: 244 VETFHGEGGEAVQSVGDERAVDVLGVAIEGEDATVARLRAERGKLVDRDRHTLEAPAAEG 303 Query: 288 GGTE---LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQ 344 GTE + V+ F+ Q+Y + R LP +LL D + A L ++V+ Sbjct: 304 AGTEEGGVPAVLAAFIVQYYAE----RDLPDALLLPERHGDDEVAA----WLEAEGVSVR 355 Query: 345 TKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTM 404 G A+ + LA NA + + LA L++ +R+E FD+SH Sbjct: 356 VPGAGREAKLVDLALKNARRNVGGR--------DECGMLADALEIDAARRVEGFDVSHAQ 407 Query: 405 GEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI---DDSKIPD 461 G+ V S V F +A+YRR +T DDY M +L R +A+ DD PD Sbjct: 408 GKSAVGSDVTFVDGSAEKADYRRKKLT--DQNDDYDNMRALLEWRASRAVEGRDDRPDPD 465 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 ++LIDGG+GQL A++ A V WD + +AK +R P+ FS P Sbjct: 466 LLLIDGGEGQLEAARDALAA--VGWDVP---AVALAKAEER-------VVTPD-RTFSWP 512 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 D+P LH++Q +RDE+H A+ H+ R +VK L+ + GVGP+ R+ LL G ++ Sbjct: 513 SDAPHLHLLQRVRDEAHRFAVQYHQTVRDEVKTV--LDDVPGVGPETRKRLLGRFGSVEN 570 Query: 582 LRNASVEEIAKVPGISQGLAEKI 604 +R ASV++I V GI + AE I Sbjct: 571 VREASVDDIESVEGIGEKTAETI 593 >UniRef50_Q7V7L7 UvrABC system protein C n=43 Tax=Cyanobacteria RepID=UVRC_PROMM Length = 667 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 205/644 (31%), Positives = 345/644 (53%), Gaps = 49/644 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEAL 59 + D+ + LK + ++PG Y M D ++YVGK+K L+ R+ SYFRS+ + + Sbjct: 28 LKDENRLEQRLKEIPAEPGCYLMRDVEDRLLYVGKSKCLRNRVRSYFRSSSDHGPRIRLM 87 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V QI +I+ VT +E E+L+LE N IK QP +NVLL+DDK YP++ ++ + +PR+ + Sbjct: 88 VRQIAEIEFIVTDSEAESLVLESNLIKNQQPHFNVLLKDDKKYPYLCITWSEEYPRIFIT 147 Query: 119 RGAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 R + + ++GP+ + +R TL L+++ FP+RQ ++++R+ CL Y IGRC G Sbjct: 148 RRRRFRNKNDRFYGPYVDVGLLRRTLLLVKRSFPLRQRPRPLHQDRT--CLNYSIGRCPG 205 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 C + ++ ++Y Q + V + G++ ++ L +ME S +++E AA IRDQI+ + Sbjct: 206 VCQQK-ITPQDYHQVLRKVAMVFQGRNQELKVLLEKQMERYSDRMDYESAANIRDQIKGL 264 Query: 237 RRVTEKQFVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 ++TE Q +S ++ DV+ +A D +A V + +R GK++ + T L Sbjct: 265 EQLTEGQKMSLPDSSVSRDVLAIASDHRVAAVQLFQMRAGKLVNRLGFTADAVDQT-LGS 323 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 V++ + + Y Q + +P E+L+ ++L + LL D LSE GR++ + R +A Sbjct: 324 VLQRVIEEHYSQVDAV-EVPPEVLVQYSLPQQELLVDWLSEHRGRRVQISCPQRQAKAEL 382 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCV 413 ++L NA L+ S Q LA +L+L + +R+E +DISH G VAS V Sbjct: 383 IELVERNAVFELSRAKSGQQQQELATEDLAQLLELTTQPRRIEGYDISHIQGSDAVASQV 442 Query: 414 VFDANGPLRAEYRRYNI--TGITPG--DDYAAMNQV--------------------LRRR 449 VF P + YR+Y I + I G DD+ AM ++ L+R Sbjct: 443 VFIDGLPAKQHYRKYKIKSSSIKSGHSDDFMAMAEIMRRRFRRWARVKQEGSNFENLQRC 502 Query: 450 YGKAIDDSKI---PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGL 506 G A+ + PDV++IDGGKGQL+ A ELD+ D L V A + Sbjct: 503 SGSALQTDGLNDWPDVVMIDGGKGQLSSAMEALRELDLHED------LVVCSLAKKH--- 553 Query: 507 ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP 566 E +F + + PD + +++ +RDE+H A+ HR++R N S L I G+GP Sbjct: 554 EQIFVPGQSKPLDSDPDQLGVVLLRRLRDEAHRFAVSYHRQQRGVRMNRSRLTDIPGLGP 613 Query: 567 KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 +R + LL + + ++ ASV++I++ PG+ LA ++ W+ H Sbjct: 614 RRVRDLLAHFQSIDAIQLASVQQISQAPGLGPALALQV-WTYFH 656 >UniRef50_A9BGW2 UvrABC system protein C n=1 Tax=Petrotoga mobilis SJ95 RepID=UVRC_PETMO Length = 574 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 192/605 (31%), Positives = 329/605 (54%), Gaps = 41/605 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF--RSNLASRKTEALVAQIQQ 65 ++ L + +PGVY + G IY+GKAK+LK R+SSYF ++ + + KT ++ + Sbjct: 4 RSILNNIPKKPGVYIFKNNKGDPIYIGKAKNLKNRVSSYFNKKNYIGNEKTYEMLEKATN 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D +T E +A +LE N I +++P+YN++L+D + YP+I ++ + P++ R K K Sbjct: 64 LDYIITSNENQAFILEANLIYIHKPKYNIMLKDTRVYPYILVTDEQFPKIKYIRTKKEEK 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G+++GP+ + V++ + +LQ ++ IR C+ + R +S+PC Y +GRC GPC + V E Sbjct: 124 GKFYGPYSDVKFVKDVIEVLQSVYKIRSCDRDLGR-KSKPCFLYHLGRCYGPCYKD-VDE 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y + VE V+ LSG ++V L M ++ +E+AA++RD + + + E+ V Sbjct: 182 TVYQESVEKVKKVLSGDIEEVKNYLQKAMMDYAKIKNYEKAAQMRDTLFKLENLFEEVAV 241 Query: 246 S-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 G +LD+I ++ + VL +R+G ++ S+ + +E F+ Q+Y Sbjct: 242 EYKNGKNLDII--MYEPPVYL--VLIVRKGYLISKLSF--------TMEGTLEDFLYQYY 289 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + + P I +N + D L E ++I + G ++ ++A TN Sbjct: 290 I--VRKNEPPSLISTLYNEEISPEILDFLKEKGLKRI----EKIGKSSKIYEMAYTN--- 340 Query: 365 ALTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 L ++ +Q + L +L L E K +E DISH G TVAS V F+ P + Sbjct: 341 -LQEEIKRQKDLSFALKQAKEILSLKKEPKIIEGIDISHLQGLYTVASLVRFENGKPKKE 399 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 YR+Y + I DD+ ++ V++RRY K ++PD++ IDGGKGQ+ A E+ Sbjct: 400 GYRKYRLDDIKAPDDFESIRTVIKRRYQK----HELPDLLFIDGGKGQVNSAVEALKEIG 455 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 S ++G+AK +R + F + LP D P L ++ ++RDE+H AIG Sbjct: 456 YSLKDVD--VVGIAKEDER------IVFPGDIPDLHLPLDHPVLRLLIYVRDETHRFAIG 507 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 +R R+K + L+ I G+GPKR++ L+K+ GG+Q L AS+EEI+KV S+ +A++ Sbjct: 508 FNRSLRSKRFEKTKLDDIYGIGPKRKKELIKHFGGIQKLLEASIEEISKVVK-SEKIAKR 566 Query: 604 IFWSL 608 I SL Sbjct: 567 IKESL 571 >UniRef50_A8SNK4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNK4_9FIRM Length = 620 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 189/624 (30%), Positives = 317/624 (50%), Gaps = 39/624 (6%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 +FD LK + PGVY MYD +IYVGK+ LK R+ SYF +N +K +A+V I Sbjct: 7 EFDINYELKKLPDLPGVYIMYDKDDKIIYVGKSVSLKNRVRSYFTTNHKYKKVQAMVEHI 66 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 + + + + ETE+L+LE N IK +P+YN+ L+DDK YP+I ++ + P++ R K Sbjct: 67 HRFEYIIVNNETESLVLEANLIKKNRPKYNINLKDDKQYPYIKITNEKFPKILKVRDIKE 126 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEG 181 K +YFGPFP + + + L I+ IR C+ + + + RPC+ Y +GRC PC + Sbjct: 127 DKAQYFGPFPTISDLEKLMELSILIYNIRDCKLNFDKGKFLQRPCMSYYLGRCSAPCTQN 186 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + E Y V+ V FLSG ++ L++RM+ +S E+E A + RD + + + Sbjct: 187 -IDRENYNNDVKRVIKFLSGDTTEIKEILLNRMKQSSAKEEYELAMKYRDFLSEIDYLFT 245 Query: 242 KQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 KQ F + +I A+ + V + + G V+ + + + E+ E+ + Sbjct: 246 KQIFNIKKFKEYHLISYAYAENILVVAIFIVNDGLVVDRKHFIVENILDLEVEELFSNVI 305 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAG----RKINVQTKPRGDRARYLK 356 QFY+ E+ +D+ SD+ L + LA + I+V+ +G + +K Sbjct: 306 RQFYISHHNK---VKEVYIDY--SDEKFLNEISLFLANIFSEKSISVKNPKKGVKFDQMK 360 Query: 357 LARTNAATALTSKLSQQSTVH----QRLTALASVLKLPEVKRMECFDISHTMGEQTVASC 412 + + NA LT + ++ Q + L ++L + + R+EC+DIS+ G+ V S Sbjct: 361 ILQKNANEILTKHIFDNKNINVKYLQAINYLKNILDIDNLDRIECYDISNISGDFNVGSM 420 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD---------SKIPDVI 463 VV+ +YR++ I + DDY++ ++L RR+ + +D+ S+ PD+I Sbjct: 421 VVYKNGFKSSKDYRKFKIKTVVGQDDYSSHREMLTRRFNRFLDEKINSAGSSFSEKPDLI 480 Query: 464 LIDGGKGQLAQAKNVFAE--LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 L+DGGKG + AK V E LDV P++ V R G+ +F E L Sbjct: 481 LMDGGKGHVNVAKEVLLEKNLDV------PVIGLVKNDKHRTKGI--IF---EDNYIELD 529 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 ++ + I++E H AI HR + K S L+ I+GVG ++ LL + G + Sbjct: 530 INTNIYRFLFDIQEEVHRFAINYHRSLQNKKLQNSVLDEIKGVGEIKKIKLLSHFGSISS 589 Query: 582 LRNASVEEIAKVPGISQGLAEKIF 605 ++ ASVEE+ V + + A+ IF Sbjct: 590 IKKASVEELLMVDKMDKKTAKNIF 613 >UniRef50_Q26GF0 Excinuclease ABC, C subunit n=5 Tax=cellular organisms RepID=Q26GF0_9BACT Length = 599 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 193/612 (31%), Positives = 324/612 (52%), Gaps = 47/612 (7%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 ++ + + PGVY+ YD ++YVGKAK+LKKR+SSYF N S + +++V +I I+ V Sbjct: 10 IRILPTTPGVYQYYDKDHKLLYVGKAKNLKKRVSSYFTKNHDSYRIKSMVKKIVTIEHIV 69 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 TE +ALLLE++ IK PRYN++LRDDK+YP++ + + PR+ + R EY+G Sbjct: 70 VETEMDALLLENSLIKNRNPRYNIMLRDDKTYPWLCIKKERFPRVFLTRRMIKDGSEYYG 129 Query: 131 PFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 PF + VR L L++ ++P+R C+ + + + + CL+Y IG C GPC E L+SE Sbjct: 130 PFSSVKTVRALLDLIKGLYPLRTCKYDLSADKINAGKYKVCLEYHIGNCAGPC-ENLMSE 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 YA+ ++ VR + G S+M + N++FE+A RI+++++ +++ K V Sbjct: 189 TAYAENIDNVRNIVKGDYKNASKHFESQMMELASNMQFEDAQRIKEKLEILQKYQSKSTV 248 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP---GGTELSEVVETFVG 301 N+ D+DV + D A ++ L + G ++ S + K EL E+ + Sbjct: 249 VNSKITDVDVFSLISDETHAYINYLQLSHGAIVRSHTLEIKKKLEETDQELLEIAIIELR 308 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q + + +P E+ L G +I V GD+ + + L+ N Sbjct: 309 QRFNSQCKEVYVPFEVKL------------------GDQIKVTIPQLGDKKKIVDLSLRN 350 Query: 362 AATALTSKLSQQSTVH-----QRLTA-LASVLKLPEVK-RMECFDISHTMGEQTVASCVV 414 A + V +RL A + + L+L E +ECFD S+ G VA+CVV Sbjct: 351 AKFYRQEQFKTIKIVDPDRHVKRLMAQMKADLRLDEEPVHIECFDNSNIQGTNPVAACVV 410 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLA 473 F P + +YR +NI + DD+A+M +V+ RRY + +++ + +P ++++DGGKGQL+ Sbjct: 411 FKNGKPSKKDYRNFNIKTVEGPDDFASMEEVVHRRYRRLLEEGEPLPQLVVVDGGKGQLS 470 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 L + + ++G+AK LE LF+ + L S L VIQ + Sbjct: 471 SGLKAIDRLGL---RGKITIIGIAK------RLEELFYPNDPVPLYLDKRSETLKVIQQM 521 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 R+E+H I HR KR+K + L+TI G+G K LL++ ++ ++ AS +E+ + Sbjct: 522 RNEAHRFGITHHRNKRSKQAIETELDTIPGIGEKTAVELLRHFRSVKRIKTASKKELEDI 581 Query: 594 PGISQGLAEKIF 605 G+S+ A+KI Sbjct: 582 IGVSR--AQKII 591 >UniRef50_C8WI08 Excinuclease ABC, C subunit n=3 Tax=Coriobacteriaceae RepID=C8WI08_EGGLE Length = 737 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 201/635 (31%), Positives = 327/635 (51%), Gaps = 46/635 (7%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K L +V + PGVY D G VIYVGKAK L+ R+ Y K LV QI D Sbjct: 63 KEELNSVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSFD 122 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V E E+L+LE N I + P +N +DDKSYPFI L+ GD P + R A Sbjct: 123 YIVVENEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRADT 182 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR---------------NRSRPCLQYQI 171 +YFGP+ + A R+ + + +++ P+ + +R + +RPC + Sbjct: 183 KYFGPYTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAHV 242 Query: 172 GRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRD 231 G G C G ++ E+Y V+ + FLSG+ + + +L + M+ A+ L+FE AARI+ Sbjct: 243 GLGPGACCGG-ITPEDYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIKA 301 Query: 232 QIQAVRRVTEKQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT 290 +I + +T+KQ VS D DV+G+ + +A VHV +R+G+++ S + Sbjct: 302 RIDTINSLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKDV 361 Query: 291 ELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDK----TLLADSLSELAGRKINVQTK 346 +++ F+ ++Y ++P E++L DK L + L+ G K+ + Sbjct: 362 PDDDLLHMFLLRYY---DATTSIPHEVILRDEPEDKAAMEAWLTEKLASPYGAKVRITAP 418 Query: 347 PRGDRARYLKLARTNAA-TALTSKLS---QQSTVHQRLTALASVLKLPEVK-RMECFDIS 401 +G++A + +A TNA T + K+ ++ L L S L L E R+ECFDIS Sbjct: 419 QKGEKAELVGMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDIS 478 Query: 402 HTMGEQTVASCVVFDANGPLRAEYRRYNI-TGITPGDDYAAMNQVLRRRYG-KAIDDSKI 459 G TVAS VVF P + +YRR+ I T + +D+ +M +V+ RRY + + D + Sbjct: 479 TIHGSYTVASMVVFTNGKPDKNQYRRFKIKTPLDEANDFLSMQEVMSRRYAPERMADERF 538 Query: 460 ---PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGE 516 PD+I++DGGK QL+ A +F + + + + G+AK E LF + Sbjct: 539 GSKPDLIILDGGKPQLSAALEMFERMGI----DDIAMCGLAKRD------EELFVPWQDT 588 Query: 517 G-FSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKY 575 G LP S +L++++ +RDE+H AI HR+ R K S L+ + G+GP R++ LLK Sbjct: 589 GPVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLKA 648 Query: 576 MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + L++A++EEI + + +AE+++ L+ Sbjct: 649 FKSFKNLKSATLEEIKEARVVPVEVAEELYRVLQQ 683 >UniRef50_D1VGT9 Excinuclease ABC, C subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VGT9_9ACTO Length = 835 Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 226/712 (31%), Positives = 334/712 (46%), Gaps = 123/712 (17%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF A +T + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDPHGRVLYVGKAKNLRARLNNYFTDVFALHPRTRTM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+ +IK Y PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VTTASSVEWTVVSTEVEALALEYTWIKEYDPRFNVRYRDDKSYPSLAVTLQEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSTGVFKRAGQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V+ +E+ Q V+ F++G+ + L +L M A+ ++E AAR+RD A Sbjct: 181 APCV-GRVTPDEHRQIVDDFCDFMAGQTGRFLRRLEDEMRAAADAQDYERAARLRDDAGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DV+ A D A V V ++R G+V G R + ++ Sbjct: 240 LRRAMEKQAVVLADGTDADVVAFAQDELEAAVQVFYVRGGRVRGQRGWVVDKLADVTTAD 299 Query: 295 VVETFVGQFYLQG-----------SQMRTLPG---------------------------- 315 +VE F+ Q YL S R PG Sbjct: 300 LVEQFLTQEYLGDKDLGDIELGDLSPARPGPGATAAPAETAGAEDAAGVLRRGRPSRAGA 359 Query: 316 -----------------EILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 E+L+ +D + + L+ G ++ V+ RGD+ ++ Sbjct: 360 APDAVRGVGGRHADIPREVLVPELPTDADAVGELLARYRGGRVEVRVPQRGDKRTLMETV 419 Query: 359 RTNAATAL----TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 NA AL T + S + L L L L E R+ECFD+SHT G+ VAS V Sbjct: 420 ERNAKQALVLHRTKRASDLTARSLALAELQETLGLAEAPLRIECFDVSHTQGQDVVASMV 479 Query: 414 VFDANGPLRAEYRRYNITGI-----TPGDDYAAMNQVLRRRYGKAIDD------------ 456 VF+ ++EYRR+ I G DD A+M + + RR+ + + + Sbjct: 480 VFEDGVARKSEYRRFTIRGAARRDGNEQDDTASMYETVSRRFSRYLAELSRTGELPGTDQ 539 Query: 457 --------------------------------SKIPDVILIDGGKGQLAQAKNVFAELDV 484 + P+++++DGG Q+A A A+L + Sbjct: 540 DAPADGSAGAAAGAEGTDGPEPLVVDGRPRRFAYPPNLVVVDGGPPQVAAAARALADLGI 599 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 L G+AK LE ++ + + LP S AL+++Q +RDE+H AI Sbjct: 600 DAGPGGVALCGLAK------RLEEVWLPDDPDPVILPRTSEALYLLQRVRDEAHRFAITF 653 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 HR+KR+ +S L+ + G+G RR+ LLK G + LR AS EEI+ VPGI Sbjct: 654 HRQKRSASMTSSLLDGVPGLGETRRKALLKTFGSVAKLRAASAEEISTVPGI 705 >UniRef50_C3JAE7 Excinuclease ABC subunit C n=2 Tax=Bacteria RepID=C3JAE7_9PORP Length = 604 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 187/608 (30%), Positives = 324/608 (53%), Gaps = 36/608 (5%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + K L T+ PG Y+ Y+A G +IYVGKAK+L++R+SSYF+ RKT LVAQI Sbjct: 5 EIKKILPTLPLSPGCYQYYNAEGEIIYVGKAKNLRRRVSSYFQKEHTDRKTRQLVAQIVD 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 + V E++ALLLE+N IK YQP+YN+LL+DDKSYP I ++ + PR+ + R + Sbjct: 65 VKYIVVANESDALLLENNLIKTYQPKYNILLKDDKSYPSIVVTREPFPRIFVTRTIDPSW 124 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVE 180 G+Y+GP+ + + ++++++ +R C + ++ R + CLQY I RC PC E Sbjct: 125 GDYYGPYTSVAMAHGMVGIIREMYKVRTCRHRFTQEAIERGKYARCLQYHIKRCEAPC-E 183 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GLVS E+Y + L G QV+ Q SRM S+ L +EEA + + ++ ++ + Sbjct: 184 GLVSREDYLNNIAAAVELLKGNLRQVIQQTTSRMLALSEELRYEEAGQEKARLAMLQAYS 243 Query: 241 EKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 K V+ T D+DV + MA V+++ + +G ++ + + K E ++ T Sbjct: 244 TKHIVAPETRHDIDVFSYEEEGPMAYVNMMQVHEGAIVRALTVEYKKAIDEEAEDIFATA 303 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + + L+G + + E++L + L ++L S++ +G++ + L+L+ Sbjct: 304 ITE--LRG-RYESRAKEVILPYPLGWESLGHFSIT----------IPKQGEKKKLLELSI 350 Query: 360 TNAA------TALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASC 412 N KL+ + V + + + L LP R +ECFD S+ G VA+C Sbjct: 351 DNVKRYKLDQLKRAEKLNPEQRVQRLMNKMIEDLHLPVAPRYIECFDNSNLQGTAPVAAC 410 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQ 471 VVF P + EYR++++ + DD A+M +++ RRY + ++ +P +I+IDG +GQ Sbjct: 411 VVFRNGKPSKKEYRKFHVKTVEGADDLASMREIVERRYRRLQEEELPLPQLIVIDGARGQ 470 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L A + + + ++G+A+ +E ++F E L DS L + Sbjct: 471 LEVAVETLSAMGIGAPTT--TIIGLAE------RMEEVYFPGEENPLFLSRDSETLRTLM 522 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H I HR R+K + S+L+ I+GVG + ++ LL++ ++ + A + E+ Sbjct: 523 QIRDEAHRFGITFHRSIRSKNQIHSALDDIDGVGKQTKEALLRHFRSVKRIEAAELPELE 582 Query: 592 KVPGISQG 599 + G +G Sbjct: 583 SLIGKKRG 590 >UniRef50_C6X0K5 Excinuclease ABC subunit C n=9 Tax=Bacteroidetes RepID=C6X0K5_FLAB3 Length = 611 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 188/603 (31%), Positives = 319/603 (52%), Gaps = 38/603 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LKT+ S+PGVYR YD ++YVGKAK LKKR+ SYF NL +T +VA+I +++ T+ Sbjct: 22 LKTLPSEPGVYRYYDKNDQLLYVGKAKHLKKRVLSYFNKNLPGYRTRIMVAKIHRLETTI 81 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 +E +ALLLE+N IK +QP YNV+L+DDKSYP+I + + PR+ + R EY+G Sbjct: 82 VPSEYDALLLENNLIKEHQPFYNVMLKDDKSYPWICIKNEDFPRIFLTRTMIKDGSEYYG 141 Query: 131 PFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 P+ + L ++ I+ +R C + + + CL++ I C GPC E L S+ Sbjct: 142 PYARVRPAKVLLDTIKHIYKLRTCTLNLSPPKIAEGKYKVCLEFHIKNCQGPC-EMLESK 200 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y +++ +R + G + L+++M ++NL+FE+A +++++ + K V Sbjct: 201 EDYDLKIDAIRGIIKGDFKRAKEYLVNQMMKYAENLQFEDAHVVKERLDMLENYQHKHTV 260 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 N DD+DV G+ D A V+ I+ G ++ S + TE+ ++++ + Sbjct: 261 VNPNIDDVDVFGMTSDETAAYVNYFKIQNGNIIQSFT--------TEIKKILDE-SDEDI 311 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 L+ + + EI FN K +L L + + GD+ R ++L+ NA Sbjct: 312 LEEAMI-----EIRQKFNSDSKEILLPFHLTLEIPNVKLIVPKVGDKKRIVELSEKNAKE 366 Query: 365 ALTSKLSQQSTV------HQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDA 417 KL V ++ + + +L++P E + +E FD S+ G V++CVVF Sbjct: 367 YRIEKLKAVQIVDPERHTNRIMAEMQKLLRMPVEPRHIEGFDNSNIQGTNPVSACVVFKN 426 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAK 476 P +A+YR ++ + +D+A M +V+ RRY + + ++S +P +ILIDGGKGQL+ A Sbjct: 427 GKPSKADYRIFHPKTVEGANDFATMEEVIHRRYRRLLEENSPLPQLILIDGGKGQLSSAV 486 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 L + ++G+AK LE ++F + L S L ++Q +RDE Sbjct: 487 KSLKLLGLYGKIT---IIGIAK------RLEEIYFPEDPIPLYLDKKSETLKILQRVRDE 537 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 SH + HR +R S LE I G+G K +LL + ++ ++ +S E + ++ G Sbjct: 538 SHRFGVKHHRTRRKNSTIKSELEEIPGIGEKAVDLLLSKLKSVKRVKESSRETLEEILGK 597 Query: 597 SQG 599 S+G Sbjct: 598 SRG 600 >UniRef50_C5NYN4 Excinuclease ABC subunit C n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYN4_9BACL Length = 582 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 189/606 (31%), Positives = 312/606 (51%), Gaps = 42/606 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L+ + PG Y D G +IYVGKAK+LK R+ SYF + ++KT+ LV++I+ ++ + Sbjct: 9 LELLPDNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYF-TGTHNKKTQTLVSKIEDLEYII 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG-AKHAKGEYF 129 ++E EALLLE+N IK Y+P +N+ L+DDKSYP++ ++ + HPRL M R K+ K YF Sbjct: 68 VNSEKEALLLENNLIKKYRPYFNIRLKDDKSYPYLMITKEEHPRLLMTRKYKKNNKNIYF 127 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+ + + E +L KI+P+R+C N V RPC+ YQIG C+GPC + ++ ++Y Sbjct: 128 GPYVDIKSATEVKKILDKIYPLRKC-NPV---EKRPCMYYQIGECIGPCAKK-ITADDYK 182 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN-T 248 Q+ ++ FL+G ++LT L S+++ +NLEFE A +I + I+++ + Q V++ T Sbjct: 183 SQISKIKSFLTGNTKEILTDLQSKLQEHIKNLEFEAAGQIHNYIKSIEVSVQNQVVADST 242 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSR-SYFPKVPGGTELSEVVETFVGQFYLQG 307 D D IG F+ C+ + R G ++ + YF L + E + + LQ Sbjct: 243 NVDRDYIGFTFNNDYICIQIFLSRLGNIIERKVEYF-------NLYDTPEEILYSYLLQY 295 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + LP EI +D D LL+D + V RG+ + L + NA L Sbjct: 296 YALNKLPKEIYID--EVDDNLLSDVVD------CKVIIPKRGNHRKILDTVKENATYYLN 347 Query: 368 SKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 + L+ ++ + L +A L + + ++ FD S+ MG V+ V F Sbjct: 348 NNLAIEELKERKLQVTLNNIAEKLGVNSINSIDAFDNSNIMGVDAVSVKVNFTNGKKNTY 407 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 YR++ I +D M +VL R Y D +++++DGGK L A +V Sbjct: 408 NYRKFKIDESMGINDVQTMKEVLYRNYK---DRKTNTELLIVDGGKNHLNVAIDVVHN-- 462 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 + D ++G+AK + + E P S ++ I+DE H AI Sbjct: 463 -TLDLKQIKIIGLAKND---KHITEYIITDDYEIIEFPKTSAEYLFLKQIQDEVHRFAIT 518 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 HR + K SSL+ I+G+G R+ +LLK L+ ++NA E++ K+ G+ + Sbjct: 519 YHRATKNKNMYKSSLDDIQGIGKVRKNLLLKSFSSLEEIKNAPDEKLLKL-----GIPKD 573 Query: 604 IFWSLK 609 + +LK Sbjct: 574 VIKNLK 579 >UniRef50_A5M6P1 Excinuclease ABC subunit C n=1 Tax=Streptococcus pneumoniae SP14-BS69 RepID=A5M6P1_STRPN Length = 553 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 183/473 (38%), Positives = 272/473 (57%), Gaps = 33/473 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K+ L+ + + PG Y D GT+IYVGKAK+L+ R+ SYFR + KTEALV++I + Sbjct: 6 KSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGS-HDTKTEALVSEIVDFE 64 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 VT + EALLLE N IK +P+YN++L+DDKSYPFI ++ + +PRL + R K G Sbjct: 65 FIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGGL 124 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP--CVEGLVSE 185 YFGP+P+ A E LL +IFP R+C N S+ C Y IG+C+ C + + Sbjct: 125 YFGPYPDVGAANEIKRLLDRIFPFRKCTNP----PSKVCFYYHIGQCMAHTICKKDEIYF 180 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 + AQ+V FL G+D++++ +L +M A+Q +EFE AA RD IQA+ + KQ V Sbjct: 181 KSMAQEVSD---FLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRV 237 Query: 246 SNTGDDL---DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 DL DV G D G CV V F+RQGK++ P + E T+VGQ Sbjct: 238 --MAKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNL--FPYFNDPDEDFLTYVGQ 293 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKP-RGDRARYLKLARTN 361 FY + S + +P E+L+ ++ ++ + A L KI KP RG++ + + LA N Sbjct: 294 FYQEKSHL--VPNEVLIPQDIDEEAVKA-----LVDSKI---LKPQRGEKKQLVNLAIKN 343 Query: 362 AATALTSKLS-QQSTVHQR---LTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 A +L K + + +V + + L +L++P R+E FD S+ MG V++ VVF Sbjct: 344 ARVSLEQKFNLLEKSVEKTQGAIENLGRLLQIPTPVRIESFDNSNIMGTSPVSAMVVFVN 403 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGK 469 P + +YR+Y I + DDYA+M +V+RRRYG+ ++ PD+I+IDGGK Sbjct: 404 GKPSKKDYRKYKIKTVVGPDDYASMREVIRRRYGRVQREALTPPDLIVIDGGK 456 >UniRef50_A7VUD6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VUD6_9CLOT Length = 628 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 202/612 (33%), Positives = 315/612 (51%), Gaps = 39/612 (6%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVT 71 + + PGVY M +A +IY+GKAK LK R+S YF S K +V+Q+ D +T Sbjct: 14 ALPAAPGVYLMKNASNEIIYIGKAKALKNRVSQYFGSPKNHPPKVRKMVSQVDHFDYILT 73 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGP 131 +E EAL+LE + IK + P+YN+LL+DDK Y +I ++ + R+ + + EY GP Sbjct: 74 DSEFEALVLECSLIKQHTPKYNILLKDDKGYHYIKVTPKPYRRIFEAKQKLNDGAEYIGP 133 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 + + ++V++++ +KIF + C + R RPCL Y I +C PC G +SEEEY Sbjct: 134 YTSSFSVKQSVDEARKIFKLPTCSRKFPQEIGRGRPCLNYFIKQCCAPC-RGKLSEEEYE 192 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 V+ FL G + + +M A++NLEFE AARIRD+I AV+R+T KQ V T Sbjct: 193 GYVDEALEFLKGGSVVSVKDMTQQMNEAAENLEFERAARIRDRISAVKRITAKQKVVATK 252 Query: 250 ---DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYF---PKVPGGTELSEVVETFVGQF 303 D+ + A A V+F G L + F G T +E F+ Q+ Sbjct: 253 VREQDVVAMAQAAGAAAHACVVVFRFSGGRLCDQEEFMLGEIADGKTTRAE----FLQQY 308 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y Q RT+P ++ LD + K L LSE AGR + + +G++A + + R NA+ Sbjct: 309 YAQ----RTVPPQVTLDGEVEGKEALRQWLSEKAGRSVKLTVPQKGEQAHLVDMCRRNAS 364 Query: 364 TALTSKLSQQSTVHQRLTALASVLKL---PEVKRMECFDISHTMGEQTVASCVVFDANGP 420 L + + L L +L L PE +E +DIS+ G VA V F+ P Sbjct: 365 EKLAQQAGRTGREMGALDELGRLLGLAQPPEY--IEAYDISNLAGSGNVAGMVAFENGRP 422 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRR---YGKAIDD----SKIPDVILIDGGKGQLA 473 L++ YR++ I G DDYA+M +V+ RR Y + D ++PD+IL+DGGKG +A Sbjct: 423 LKSAYRKFKIKGFEGQDDYASMQEVISRRLQEYQEKKDTGEGFGRLPDLILLDGGKGHVA 482 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 + V + L G+ K + T +G ++ A ++ I Sbjct: 483 AVRPVLEAFGLQIP-----LFGMVKDDKHR----TRAIARDGGEIAINSSRQAFTLVSQI 533 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 +DE H AIG HR+ R + +SSL +I G+GP R + LLK ++ + A ++E+ + Sbjct: 534 QDEVHRFAIGYHRQTRKRTALSSSLTSIPGIGPSRAKALLKSFKTIKNIAQAELKELEQA 593 Query: 594 PGISQGLAEKIF 605 P ++Q A+ ++ Sbjct: 594 PSMNQPAAQAVY 605 >UniRef50_Q255T2 UvrABC system protein C n=17 Tax=Chlamydiaceae RepID=UVRC_CHLFF Length = 604 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 200/606 (33%), Positives = 319/606 (52%), Gaps = 47/606 (7%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVTV 70 K + PGVY M D+ G V+Y+GKAK+L+ R+++YF+ SR + L+ + I+ + Sbjct: 9 KIIPPSPGVYLMKDSSGEVLYIGKAKNLRNRITTYFQKQGDSRERIPFLMKKTTDIETIL 68 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG---AKHAKG 126 ETEALLLE+N IK Y P+YNVLL+DDK++ + +S PR+ R K Sbjct: 69 VSNETEALLLENNLIKKYHPKYNVLLKDDKTFFCLAISLSHPWPRIDAIRTKAVTSSKKQ 128 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 FGP+ + A + L ++ + FP+R C N + R RPC+ Y++ RCL PCV S+E Sbjct: 129 IVFGPYVSAEACQTLLEVIGQWFPLRTCSNREFSTRKRPCILYEMKRCLAPCV-NFCSQE 187 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 EYA+ +E LFL G+ +++ +L +E ASQ +FE+A ++ +++ KQ V Sbjct: 188 EYAETLEKAVLFLKGQVSEIIQKLEKSIEKASQEQKFEQAGMYYRTLKLIQQAMVKQHVE 247 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 ++D IG+ + VL IR GK+LG+R +FP E S+++ +F+ Q+Y Sbjct: 248 KFHFQNIDAIGLYRKHQETVITVLTIRSGKLLGAR-HFPFSENAQEDSDLLSSFILQYY- 305 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P EIL F+L+ L E R +++ G L LA+ NA Sbjct: 306 --ANQPHIPKEILTPFSLNIPDLPHLLNKEAPPR---IRSPKTGYGKELLNLAKNNAE-- 358 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVK----------RMECFDISHTMGEQTVASCVVF 415 +H + + +SVL E+K R+EC+D +H G V +V+ Sbjct: 359 ----------MHAQTSVQSSVLPYEEMKKILKTQDYPYRIECYDNAHLQGSHAVGVYIVY 408 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQA 475 + N YR + I+ + +D AA ++VL RR+ S +PD+I+IDGG+ Q +QA Sbjct: 409 ENNALSPKNYRTFAISS-SAHNDLAAFHEVLSRRFSST--SSPLPDMIVIDGGRLQYSQA 465 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGL---ETLFFEPEGEGFSLPPDSPALHVIQH 532 K +L+++ + ++ +AK A +G E LF + +G LPP S L Q Sbjct: 466 KKTLKKLNLTGIQ----IVSIAKEASNHSGSLRHEKLFCDIFPQGIQLPPTSKLLQFFQK 521 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI HRKKR++ E I G+G +R+ LLK + + AS E+ Sbjct: 522 LRDEAHRFAISKHRKKRSR-DLLLPQEKIAGIGEVKRKRLLKKFKSWKQVMQASQGELET 580 Query: 593 VPGISQ 598 +PG+++ Sbjct: 581 IPGLTK 586 >UniRef50_B7J223 UvrABC system protein C n=22 Tax=Borrelia RepID=UVRC_BORBZ Length = 603 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 181/594 (30%), Positives = 328/594 (55%), Gaps = 29/594 (4%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTET 75 + G Y+M + ++Y+GKAK+L+ R+ SYF S K + L+ ++ I+V T++E Sbjct: 17 TTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEK-NSHKIKILMKNVKSIEVITTNSEY 75 Query: 76 EALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNG 135 EALLLE N IK ++P YNV L+D K YP + ++ + +PR+ R + K EYFGPF N Sbjct: 76 EALLLECNLIKTHKPDYNVKLKDGKGYPMVRITHEKYPRIFKTRKIINDKSEYFGPFTNV 135 Query: 136 YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV-EGLVSEEEYAQQVEY 194 + + L + K F IR+C+ + + PCL Y +G+CLG C E L E+EY ++++ Sbjct: 136 KKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENL--EKEYQKELDK 189 Query: 195 VRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-DLD 253 + L+G ++ +Q+ +++ A Q +FE A ++++ ++ + + Q V+ T + ++D Sbjct: 190 AKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLNID 249 Query: 254 VIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTL 313 + V + + VL R GK++ + F + + +E++ F+ Q+Y + + + Sbjct: 250 YVHVHPGENVNTIIVLKYRNGKLVERDANFDE--SICKENELILQFLIQYYTSINMI--V 305 Query: 314 PGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ 373 P +I + D + ++E+ K + K + + +++A +NA +L ++ Sbjct: 306 PDKIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREYENKS 365 Query: 374 STVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGI 433 + + L + + KLP++ +E FDI+H G++TVAS V F P + YR Y + + Sbjct: 366 TKALESLKIVLEMDKLPKI--IEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSL 423 Query: 434 TPG--DDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH 490 G DD+ A+ +V+ RRY + I+++ ++P++ILIDGGKGQL A ++ L + N Sbjct: 424 LKGEIDDFKAIKEVISRRYSEIINNNLELPNLILIDGGKGQLNAALSILKGLKIE---NK 480 Query: 491 PLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA 550 + +AK ET+F +G +LP PAL ++Q++RDE+H A G ++K+R Sbjct: 481 VKVCSLAKKQ------ETIFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRRE 534 Query: 551 KVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 K+ T I G+G K Q +LK +G + + S EI++ ++ LA++I Sbjct: 535 KI--TLLYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAKRI 586 >UniRef50_D1PLG8 Excinuclease ABC subunit C n=3 Tax=Ruminococcaceae RepID=D1PLG8_9FIRM Length = 616 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 195/612 (31%), Positives = 314/612 (51%), Gaps = 33/612 (5%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVTVTHTETE 76 PGVY + D T+IY+GKAK LK R+S YFR + K ++A DV V +E E Sbjct: 17 PGVYIIRDKSDTIIYIGKAKRLKTRVSQYFREGVPHDAKVTQMIAHAFTFDVIVCQSEFE 76 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGY 136 AL+LE + IK + P+YN+LL+DDK Y ++ ++ PR++ +Y GPF + + Sbjct: 77 ALVLEASQIKAHTPKYNILLKDDKGYSYVKVTKGPWPRISAALQKDDDGADYIGPFTSSF 136 Query: 137 AVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVE- 193 AVRE + + Q F + +C R+ + RPCL IG+C+ C G +S E Y + V+ Sbjct: 137 AVREMVEMAQDCFLLPRCNREFPRDFGKGRPCLNAHIGKCMAVC-SGKISCEAYNEAVQG 195 Query: 194 YVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-DL 252 +R+ GK D ++ QL +ME AS+ L+FE AA +RDQIQA+ RV Q V GD ++ Sbjct: 196 ALRMIRYGKKD-IVKQLREKMEAASERLDFETAALLRDQIQAIERVAAGQKVVMDGDTEM 254 Query: 253 DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRT 312 DVI +A C VL R G++ R + T++ +V E F+ Q+YL G T Sbjct: 255 DVIALAGTTRAVCAAVLRYRDGRLTDKREFV--FHDTTDIEQVREEFLPQYYLDGE---T 309 Query: 313 LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQ 372 +P I +D +D L ++L++ G K+ + RGD A+ + +A TNA L + + Sbjct: 310 IPKIIAVDKLPADAEALNEALNQTRGSKVELYVPQRGDVAKLVTMAYTNAVERLGRESGR 369 Query: 373 QSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIT 431 + + L A +L L R +E +DIS+ +V VVF P R+ YRR+ + Sbjct: 370 YTREEKLLEEAAQMLGLKAPPRVIESYDISNWGDGSSVCGMVVFKDGKPHRSGYRRFKMK 429 Query: 432 GITPGDDYAAMNQVLRRRY--------GKAIDD-----SKIPDVILIDGGKGQLAQAKNV 478 + DDYA++ + L RR G+ D + +PD++LIDGG+GQ+ K Sbjct: 430 TVAGTDDYASLAETLSRRAAEYEAARRGEKPDGPQNQFATLPDLLLIDGGRGQVGAVKQA 489 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 + H G+ K + + G ++ + + +I+DE+H Sbjct: 490 LKGTAL----EHVPTFGMVKDDHHRT---RAIVDDAGGEIAINRNRNIFTFVTNIQDETH 542 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 +A ++ K ++L + GVG K LL + + ++ AS+ ++ +V GIS Sbjct: 543 RYANDYRKRAMKKRSYAATLTALPGVGEKTSAALLAHFKTVAAVKAASISDLEEVKGISH 602 Query: 599 GLAEKIFWSLKH 610 AEK++ +L++ Sbjct: 603 AKAEKLYNALRN 614 >UniRef50_D2MQ80 Excinuclease ABC, C subunit n=7 Tax=Bacteria RepID=D2MQ80_9FIRM Length = 591 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 194/593 (32%), Positives = 301/593 (50%), Gaps = 34/593 (5%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 +A L + +PG Y+M + G +IYVGKAKDL R++ YF KT LV+ I D Sbjct: 7 EAKLAELPHEPGSYQMKNKYGEIIYVGKAKDLHNRVNQYFVGT-HDFKTTKLVSNIDDFD 65 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH-AKG 126 VT +E EAL+LE N IK Y+P+YN+ DD SYP+I L+ + +PRL + R K K Sbjct: 66 FIVTASEKEALILEINLIKKYRPKYNIQFIDDSSYPYIKLTKEKYPRLLIARDTKKDKKA 125 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGPFP+ A + T +LQ ++P R+C + CL Y +G+CLGPC E ++ + Sbjct: 126 RYFGPFPDVTAAKNTCKILQSLYPFRRCTTMP----KKLCLYYHLGQCLGPC-EFEINPK 180 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ--F 244 Y E V+ FL G +V L ++M A++N +E+A + ++++ + Q Sbjct: 181 VYDDMCEGVQRFLKGDSKEVEENLYTKMMVAAENRLYEQAQEYKVMLESIHAIVRHQQNI 240 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + D D D G + +RQG +L F P + E E+F+ Q+Y Sbjct: 241 EKDNRGDRDAFAYVVDRGYIAIAGFLVRQGIILNKE--FRLRPLYGDAQEAFESFLIQYY 298 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 R L + K + +L E+ I + RG + R + + NA Sbjct: 299 QDHPAAREL---------VLSKEMDIQALKEVLD--IPIFQPQRGYKVRLIDMCLHNAQQ 347 Query: 365 ALTSK---LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K +++Q ++ Q S L ++ R+E FD SHT G TVASCVV++ Sbjct: 348 QLDLKFKSVNRQESMRQEAVKDLSKLAGKDMNRIELFDNSHTSGSFTVASCVVYEDGQED 407 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVFA 480 R YR++ + T D +M +VL RRY + + + S+ PD IL+DGG Q+ AK + Sbjct: 408 RKSYRKFKLH--TQNSDVDSMKEVLYRRYFRLLKEGSRFPDGILVDGGWLQIEAAKEILG 465 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 +L + + +++G+ K A + EG + DS ++ ++DE H Sbjct: 466 QLGLL---DRIVVMGLVKDAHHNT---RALMDGEGRELEVSKDSALFFLLTRMQDEVHRV 519 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 AI HR+ R+K + S L+ I G+G KR+++L K G L+NAS EEIA++ Sbjct: 520 AISYHRQLRSKAQTKSVLDEIAGIGLKRKKLLWKAFGNFSHLKNASEEEIARI 572 >UniRef50_B0MPX2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPX2_9FIRM Length = 585 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 178/596 (29%), Positives = 313/596 (52%), Gaps = 23/596 (3%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVTHTETEALLLE 81 M D G +IYVGKAK LK R+++YF + + KT LV I D VT +E +AL+LE Sbjct: 1 MKDKTGRIIYVGKAKALKNRVTTYFHALESHNAKTRKLVENIYDFDFIVTPSELDALVLE 60 Query: 82 HNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 141 + IK Y P+YN+LL+DDK Y +I ++ + +PR++ EY GPF +G+ ++ Sbjct: 61 CSLIKQYNPKYNILLKDDKGYNYIKITKEPYPRISYALNCNDKNAEYLGPFTSGFTAKQA 120 Query: 142 LALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFL 199 + + +IF C R+ + RPCL Y I RC+G C G + ++EY + ++ Sbjct: 121 VDEVNRIFMFPSCHKVFPRDFRKERPCLNYHIKRCMGVCT-GKIKQDEYNSLIHSAIEYM 179 Query: 200 SGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTGDDLDVIGVA 258 + +L +M AS+NLEFE+AA++RD+I A+ ++ + Q S+ D DV+ +A Sbjct: 180 QNGSKASVERLTEQMYEASENLEFEKAAKLRDRINAIEKMKDGQDIFSDKTYDFDVVALA 239 Query: 259 FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEIL 318 + +A + V+ R G++ ++F + + ++ F+ ++Y ++ +P +I Sbjct: 240 QNVELASIAVMCYRGGRITDKMNFF--IGDEYDPGQMRSDFLVEYY--SARTDAIPKQIY 295 Query: 319 LDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQ 378 +D + D +L + S L G K+ V RG+ + LA+ NA+ L+ K+ + Sbjct: 296 IDKEMEDSAILEEYFSALCGHKVTVTVAQRGEGLSRVLLAKQNASEYLSMKVGRTVKEIN 355 Query: 379 RLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGD 437 L LA +L LP++ +E +DIS+ + V +V+ P +A YR++ I + + Sbjct: 356 ALEDLAKLLGLPKIPTVIESYDISNLGEDSRVGGMIVYRNGRPYKAGYRKFTIKNVIGQN 415 Query: 438 DYAAMNQVLRRRYGKAIDDSK----IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 DYA M +VL+RR + +D + +PD+IL+DGGKG + + V ++VS L Sbjct: 416 DYACMQEVLQRRIQRYLDGDESFAPLPDLILLDGGKGHVHAVQQVLDSMNVSIP-----L 470 Query: 494 LGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 G+ K + T +GE + + ++ +I+DE H ++ ++ K Sbjct: 471 YGLVKDDKHR----TRAIAAQGEEIQINANRKLFSLMTNIQDEVHRFSLSFQQQTHKKKT 526 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 L I+G+G + L+K+ Q L++AS +EIA V + + A++I+ +K Sbjct: 527 YELELTKIKGIGEAKALALIKHFKTKQALKDASPDEIASVAKVKEEKAKEIYDFIK 582 >UniRef50_C7LYI3 Excinuclease ABC, C subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYI3_ACIFD Length = 620 Score = 294 bits (753), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 213/622 (34%), Positives = 328/622 (52%), Gaps = 37/622 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D+ D L + PG Y+ D VIYVGKA++L+ R+ SYF+ S KT A+ Sbjct: 1 MMDRPD----LAAIPEAPGSYQFRDGEDRVIYVGKARNLRARVGSYFQDPRQLSPKTRAM 56 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 +A ++ V +E +ALLLE++ IK + PRYN+ LRDDKSYP I ++ G+ PR ++ Sbjct: 57 LAVASRLTWIVVPSEQDALLLEYSLIKEHHPRYNIRLRDDKSYPMIAVTVGERWPRAMIY 116 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSV---YRNRSRPCLQYQIGRCL 175 RG + YFGP+ + A RE L LL++ P+R C + + RPCL + IGRC+ Sbjct: 117 RGKRRRGARYFGPYADAGAAREVLELLRRALPLRTCSPAKLAQHERAGRPCLYFDIGRCV 176 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC+ G V E Y V+ V FL G+ ++ L + M A+ LEFEEAAR+RD++ A Sbjct: 177 GPCI-GAVDEATYRGLVDEVTGFLEGRAGSLVDALETEMHAAASRLEFEEAARLRDRLSA 235 Query: 236 VRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + V E+Q V+ + DLD IGV D + V+ +R G+++G + G L + Sbjct: 236 IEAVLERQSVALGHERDLDAIGVHRDELDLYLEVVRVRHGRIVGVGGARAERDSGAMLFD 295 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 + V +Y Q +P I+ +++ D+L+ L GR + V T R + A Sbjct: 296 ELLDLVRSYY--DDQAIDVPPRIVARVEVAEAREATDALTSLLGRPVRVVTPYRRELAVL 353 Query: 355 LKLARTNAATA----LTSKLSQQSTVHQRLTALASVLKL--PEVKRMECFDISHTMGEQT 408 +++A NAA A + + +T + LT L + L P V R+ECFD+SH G Sbjct: 354 VEIAERNAALAHQRARRERATDLATRSRGLTELGELAGLGAPPV-RIECFDMSHLQGRSY 412 Query: 409 VASCVVFDANGPLR-AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD--SKIPDVILI 465 V S VV + +G +R YR + ++ + DD AM +VL RR + D PD+I++ Sbjct: 413 VGSMVVME-DGLMRHGAYRHFRVS-VPHNDDVGAMREVLSRRLDRLDDRRFGGRPDLIVL 470 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGG QL + E ++ ++ +AK E L+ E +P + Sbjct: 471 DGGAPQLNGVLRLLEERGMAGTVP---VVALAKS------FEELYVPDRSEPVRVPRGTL 521 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 AL+++Q +RDE+H AI HR++R S+LE+I G+GP RR LL G + + A Sbjct: 522 ALYLLQQLRDEAHRFAITYHRRRRQLDAERSTLESIPGLGPARRARLLAEFGSIYEIAEA 581 Query: 586 SVEEI--AKVPG-ISQGLAEKI 604 S E+ A VP ++ + E++ Sbjct: 582 SEAELVRAGVPARVASAVRERL 603 >UniRef50_Q11YP9 UvrABC system protein C n=3 Tax=Bacteroidetes RepID=UVRC_CYTH3 Length = 596 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 195/614 (31%), Positives = 323/614 (52%), Gaps = 42/614 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF--RSNLASRKTEA 58 M ++ D ++ LK + S PGVYR Y +IYVGKAK L+KR+++YF + NL +KT + Sbjct: 1 MLEKEDIRSLLKELPSSPGVYRFYSIEKELIYVGKAKSLRKRVANYFTNKKNL-DQKTRS 59 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH 118 +V +I + T+ ++E EALLLE+N IK +P+YNVLLRDDK+YPFI LS P L Sbjct: 60 MVRKIYHAEYTLVNSEYEALLLENNLIKENKPKYNVLLRDDKTYPFICLSSADFPTLTTT 119 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGR 173 R KGEYFGP+ +G A+ + L+K F IR C+ ++ + ++ + CL+Y IG Sbjct: 120 RKIDKKKGEYFGPYTSGRAMHSLVESLRKTFFIRTCDLNLTKQNIDAHKFKVCLEYHIGN 179 Query: 174 CLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQI 233 C GPC EG +E+Y + VR L G V +M +A+++++FE+A +++ Sbjct: 180 CKGPC-EGKQEKEDYDVSIIQVRNILKGNFSSVKKYYQEKMLSAAEDMQFEKAQFFKERY 238 Query: 234 QAVRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 +V + + + N ++L+V + A V+ + I G ++ +R+ K Sbjct: 239 NSVLGLEKSSLIVNPDINNLEVYTIVKRLNRASVNFMSILHGSIIKARTIEMKAVLDETE 298 Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRA 352 E++ + + + +G S K ++ + + V RGD+ Sbjct: 299 EELLMHALFEIHEEGWD--------------STKEIICNIELPILSTYCKVSIPQRGDKK 344 Query: 353 RYLKLARTNAATALTSKLSQQST-----VHQRLTALASVLKLPEVKRMECFDISHTMGEQ 407 + + L+ NA LT Q+ V + L A S+ +LP +ECFD S+ G Sbjct: 345 KLIDLSLKNAWHTLTRYDDQKKEKPEIRVLKTLQADLSLKELPA--HIECFDNSNIQGTN 402 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILID 466 VA+ V + P + +YR +NI + +D+A+M +++ RRY + ++ P +I+ID Sbjct: 403 PVAAMVCYKNGKPSKKDYRHFNIKTVEGPNDFASMYEIVYRRYKRMGEEGLPFPTLIIID 462 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ A +L++ ++ +AK LE LFF + + L S + Sbjct: 463 GGKGQLSFACQALKDLNIY---GQIPIVSIAK------NLEELFFPGDNDPLYLDKKSES 513 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAK-VKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 L +IQ IRDE+H AI HR+KR+K + E + G+GP + LL + ++ ++ A Sbjct: 514 LKLIQQIRDETHRFAITFHRQKRSKDALLKTEFENLVGIGPGTVKKLLTHFKTVKRIKEA 573 Query: 586 SVEEIAKVPGISQG 599 S+E++ V G S+ Sbjct: 574 SIEQLTPVIGNSKA 587 >UniRef50_B2JFL2 Excinuclease ABC, C subunit n=2 Tax=Burkholderia RepID=B2JFL2_BURP8 Length = 740 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 134/285 (47%), Positives = 198/285 (69%), Gaps = 2/285 (0%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 ++++FD K L+ + PGVYR YD G V+YVGKA+DLKKR+SSYF L S + +V Sbjct: 34 VAEEFDPKKVLRQLPHMPGVYRYYDEQGAVLYVGKARDLKKRVSSYFTKTLLSPRIAMMV 93 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 ++I +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RG Sbjct: 94 SRIAKIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHQFPRMAYYRG 153 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV Sbjct: 154 SVDKKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCV- 212 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G V+EE+YA+ V FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ V Sbjct: 213 GAVTEEDYARDVSNASRFLLGRQSEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVL 272 Query: 241 EKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP 284 +Q + GD D+D++ V G CV++ +R G+ LG ++YFP Sbjct: 273 HQQAIEVGGDSDVDILAVVALGGRVCVNLAMVRGGRHLGDKAYFP 317 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 204/363 (56%), Gaps = 49/363 (13%) Query: 284 PKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINV 343 P+ G E SEV+E F+ Q YL R P +L+ + L D L E AG K+ + Sbjct: 388 PRRAHGIE-SEVLEAFIAQHYLGN---RVPP--VLVVSHAPASRELVDLLIEQAGHKVTL 441 Query: 344 QTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-----RMECF 398 +P+G + +L +A NA AL LS+Q + R +LA+ L + E + R+ECF Sbjct: 442 LRQPQGQKRAWLAMAEQNAKIALARLLSEQGSQQSRTRSLANTLSM-ECEDLAHLRIECF 500 Query: 399 DISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-- 456 DISHTMGE T ASCVVF + +EYRRYNITGITPGDDYAAM QVL RRY K + Sbjct: 501 DISHTMGEATQASCVVFHHHKMQSSEYRRYNITGITPGDDYAAMRQVLTRRYEKMVAQAA 560 Query: 457 -------------------------------SKIPDVILIDGGKGQLAQAKNVFAELDVS 485 ++P+++LIDGGKGQ+ A+ VF EL + Sbjct: 561 ANANDEAAELQPEAAADPAAAPEGAEPVAAGGQLPNIVLIDGGKGQVEIARQVFNELGLD 620 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 +L+GVAKG RK GLETL F L +S AL ++ IRDE+H AI G Sbjct: 621 LG----MLVGVAKGEGRKVGLETLVFADGRPSLELGKESAALMLVAQIRDEAHRFAITGM 676 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 R KR K + TS LE +EGVG KRRQ LL GGL+G+ AS++++A V GIS+ LAE+I+ Sbjct: 677 RAKRGKTRQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASIDDLASVEGISRALAEQIY 736 Query: 606 WSL 608 L Sbjct: 737 RQL 739 >UniRef50_Q2FPC6 UvrABC system protein C n=16 Tax=Archaea RepID=UVRC_METHJ Length = 520 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 190/548 (34%), Positives = 283/548 (51%), Gaps = 44/548 (8%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L T+ +PG Y+ D GT++YVGKAK+LKKR+SSYF+ + + + LV+ I+ IDV V Sbjct: 6 LTTIPEEPGCYQFKDETGTILYVGKAKNLKKRVSSYFQKKSITPRIDILVSLIRDIDVIV 65 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK-GEYF 129 T +E EAL+LE+N IK YQP+YN+ L+D KSY FI +S D PR+ + R K G + Sbjct: 66 TSSEVEALILENNLIKKYQPKYNIDLKDAKSYAFIQISNDPFPRIGIARDRTVKKTGTLY 125 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + + L +++ F +R C+ + R CL+ +G C PC G +SE EY Sbjct: 126 GPFVSAAERDQILKFVKQTFHLRTCK----KMTKRACLRSHLGTCAAPCT-GKISEPEYQ 180 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 V+ L GK ++ L MET + E+E+A IRD+I A+ ++E+Q+V Sbjct: 181 YLVKSADYLLKGKSQDLIYDLRKEMETFAAAEEYEKALVIRDRIAAIENLSERQYVQRQK 240 Query: 250 DDLDVIGVAFDAGMACVHVLF-IRQGKVLGSRSY-FPKVPGGTELSEVVETFVGQFYLQG 307 + I +G +LF + +G + + FP+ E F+ +F LQ Sbjct: 241 KSDEHIINYLVSGDTVYLILFHVERGSLTSKEEFVFPE----------TEDFLDEFILQY 290 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 P E++L +L + + L+ + G + + +G++ L LA N + Sbjct: 291 YSSTKPPNELILP-SLPGSG-MEEYLTHIRGSHVTLTIPKQGEKKHLLDLAYKNLEVSFF 348 Query: 368 SKLSQQSTVHQRLTALASVLKL---PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 T RL L L + PEV +ECFDISH G TVAS V F P + Sbjct: 349 -------TGKMRLAELGEALHMDTAPEV--IECFDISHLRGTGTVASMVSFRDGKPDKRN 399 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAELD 483 YRRY I P DDYAAM +V++RRY + + + S +PD+I++DGG GQL A + EL Sbjct: 400 YRRYKINSAGPSDDYAAMAEVVKRRYSRLLREKSPMPDLIVVDGGPGQLKSAHAILEELS 459 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 + ++ +AK E ++ S+ SPA +IQ IRDE+H AI Sbjct: 460 LPIP-----IISIAKRE------EEIYIPGRNTPLSIQKKSPASLLIQEIRDEAHRFAIT 508 Query: 544 GHRKKRAK 551 +K R K Sbjct: 509 YQKKLRQK 516 >UniRef50_A3NXK5 UvrABC system protein C n=59 Tax=Proteobacteria RepID=UVRC_BURP0 Length = 747 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 135/301 (44%), Positives = 200/301 (66%), Gaps = 3/301 (0%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 +F+ K L + PGVYR YDA V+YVGKA+DLKKR+SSYF S + ++ +I Sbjct: 10 RFEPKPILAQLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRI 69 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RGA Sbjct: 70 ARIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHRFPRMAYYRGAVD 129 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV G + Sbjct: 130 KKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCV-GAI 188 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 EE+YA+ V+ FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ +V +Q Sbjct: 189 GEEDYARDVDNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQ 248 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP-KVPGGTELSEVVETFVG 301 + GD D+D++ V G CV++ +R G+ LG ++YFP V L+ +E G Sbjct: 249 AIDVGGDSDVDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVETALALAGDIEALAG 308 Query: 302 Q 302 + Sbjct: 309 E 309 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 156/347 (44%), Positives = 206/347 (59%), Gaps = 43/347 (12%) Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRA 352 +EV+E F+ Q YL +P +++ +++ L+ D L E AG K+ V +P+G + Sbjct: 412 TEVLEAFIAQHYLGNR----VPPVLVVSHAPANRELI-DLLVEQAGHKVAVVRQPQGQKR 466 Query: 353 RYLKLARTNAATALTSKLSQQSTVHQRLTALASVL-----KLPEVKRMECFDISHTMGEQ 407 +L +A NA AL LS+Q + R +LA VL L ++ R+ECFDISHTMGE Sbjct: 467 AWLTMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQL-RIECFDISHTMGEA 525 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK--------------- 452 T ASCVV+ + +EYRRYNI GITPGDDYAAM QVL RRY K Sbjct: 526 TQASCVVYHHHRMQSSEYRRYNIAGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAA 585 Query: 453 ---------AIDDSKIPDVILIDGGKGQLAQAKNVFAEL--DVSWDKNHPLLLGVAKGAD 501 A ++P+V+LIDGG+GQ+ A+ VF+EL D+S +L+GVAKG Sbjct: 586 GIDGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDIS------MLVGVAKGEG 639 Query: 502 RKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETI 561 RK GLETL F L +S AL ++ IRDE+H AI G R KRAK + TS LE + Sbjct: 640 RKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEEL 699 Query: 562 EGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 EGVG KRRQ LL GGL+G+ ASV+E+A V GIS+ LAE+I+ L Sbjct: 700 EGVGAKRRQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQL 746 >UniRef50_C3XLG8 Excinuclease abc subunit c n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLG8_9HELI Length = 618 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 198/618 (32%), Positives = 319/618 (51%), Gaps = 42/618 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--------SNLASRKTEALVAQ 62 LK + + GVY +D G ++YVGKAK+LK R+ SYFR NL+ R T+ +V+Q Sbjct: 16 LKKIPNSSGVYHYFDTQGKLLYVGKAKNLKHRIKSYFRFTPNLAPAPNLSPRITQ-MVSQ 74 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 I + V E +AL+LE++ IK +P+YNVLLRDDK+YP++ + + PR+ + R Sbjct: 75 IAHLRYIVVENENDALILENSLIKQLKPKYNVLLRDDKTYPYLCVDLQEDFPRILLTRKI 134 Query: 122 KHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 +G YFGPF +G R+ L + +IFP+ Q E+ +N + CL YQI RCL PC E Sbjct: 135 FKKQGLRYFGPFSSG--ARDLLDSIYEIFPLAQKESC--KNGKKACLFYQIHRCLAPC-E 189 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G +S ++YA+ ++ L ++L L +M SQNL FEEA +RD+I ++ +T Sbjct: 190 GKISTKDYAKILQNA-LECVENPKKILAPLEQKMLQLSQNLRFEEALILRDRIAKIKNLT 248 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE-LSEVVET 298 V DLD+ + + A + F+R GK++ S + K G + LS + Sbjct: 249 PLSSVDFANLVDLDIFALVCEDKRAVLVKFFMRNGKIISSATQNLKSELGFDSLSIYKQA 308 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTL-LADSLSELAGRKINVQTKPRGDRARYLKL 357 + + + + +P +IL+ F+L + T L L E G+K+ + GD+ R +L Sbjct: 309 LINHY---SNTLPLVPKQILIPFDLGESTQELEYFLQEKVGKKVQIHFPKSGDKKRLCEL 365 Query: 358 ARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 A N L + + + L L + P R E FD SH G Q V + VV+D Sbjct: 366 AIQNGKEILRLEQNDNEEIFNALKTLFCLQNTPY--RFEVFDTSHHKGTQCVGAMVVYDG 423 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 ++ YR Y + G D+Y M ++L RR +S PD+ ++DGG GQ+ AK Sbjct: 424 LDFIKESYRHYLLEG---KDEYTQMREMLTRRIQDFQKESP-PDLWVLDGGAGQINLAKE 479 Query: 478 VFAELDVSWDKNHPLLLGVAKGA------DRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 + V+ + ++G+AK K G + + + + + L L +Q Sbjct: 480 LLESAGVNLE-----VIGIAKEKIDSKTHRAKGGAKDILRDENLKEYRLSMSDKRLQFLQ 534 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H AI H+K++ K S L +I+G+G + LL Y G + + A ++E+ Sbjct: 535 KLRDEAHRFAITFHQKQKQKTMQHSKLLSIKGIGKAIQNKLLAYFGSFEAIEKADLDELE 594 Query: 592 KVPGISQGLAEKIFWSLK 609 KV +S+ A+ +F +L+ Sbjct: 595 KV--LSKTFAKSVFNALR 610 >UniRef50_C1SGC9 Excinuclease ABC, C subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC9_9BACT Length = 599 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 200/614 (32%), Positives = 319/614 (51%), Gaps = 31/614 (5%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR--KTEALVAQIQQ 65 K LK + PG+Y G ++YVGKAK+L+ R+SSYF + S+ +T ++ + Sbjct: 3 KPVLKEIPENPGIYLYLGKNGEILYVGKAKNLRNRVSSYF-VDFESKPIRTRKMLQSARD 61 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I VT +E EALLLE+N IK +PRYNV L+D KSYPFI ++ + +P+L + R + K Sbjct: 62 IRFVVTTSEAEALLLENNVIKTEKPRYNVRLKDSKSYPFILITEEDYPKLRITRES-GKK 120 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GEYFGPF + ++R + L K+FP+R C +S +R + CL++QI +CLGPC E ++S+ Sbjct: 121 GEYFGPFVDVGSLRSIVDELLKVFPLRSCGDSKFRE-GKLCLKFQIRKCLGPC-ENMISK 178 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y Q VE +R F G D V + + M S ++ FEEAA +RD+++ + R+ KQ V Sbjct: 179 NRYNQLVEQIREFFRGNVDTVKSHMEQEMMRLSDDMNFEEAAIMRDRLRGLSRLFTKQTV 238 Query: 246 SNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 D +DV ++ + +FIR G+++GSR+ + S V+E+FV Q Sbjct: 239 VMPDDTSSIDVFVPHSFENVSGITAMFIRGGRLIGSRTEI--LEDDENPSGVIESFVLQM 296 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y S +R P + + L D L ++L +LA +K+ + + RG A KLA N Sbjct: 297 Y---SVLRNYPQMVYIA-GLEDSGSLQEALEKLADKKL--RFRKRG-YAAVEKLALDNGR 349 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 L++ S L ++ V R+EC DISH G TV +V +A Sbjct: 350 VQTQLYLNKLSKRKDITEKLKKIIGAESVSRIECVDISHLGGSGTVGVSIVAVDGEFSKA 409 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIP-DVILIDGGKGQLAQAKNVFAEL 482 +YR+Y I DD+ ++ ++ R++ + S+ P D+ ++DGG GQL A +E Sbjct: 410 QYRKYRIR-TAENDDFISIYELFSRKFENIQEGSEPPADLYIVDGGIGQLNSAMRAASEK 468 Query: 483 DVSWDKNHPLLLGVAKGADRK-------AGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + + + ++KG K +E++ +L + P L IQ +RD Sbjct: 469 GYTAN-----FISISKGRSIKFMKDKQEQSIESVHIPGRKNPLNLKKNDPLLLFIQKVRD 523 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 ESH AI RK K S L +EGVG K + +L+ + ++ + ++I++ Sbjct: 524 ESHRFAIDYSRKLALKNFKKSPLLMLEGVGEKTVRKVLEVFPDIYERKDLTAKDISEYCS 583 Query: 596 ISQGLAEKIFWSLK 609 I + A I +K Sbjct: 584 IPEKTAAVIELFIK 597 >UniRef50_A4FBL9 UvrABC system protein C n=26 Tax=Actinomycetales RepID=UVRC_SACEN Length = 717 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 185/490 (37%), Positives = 265/490 (54%), Gaps = 26/490 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--SNLASRKTEA 58 M+D + T+ PGVYR +DA G VIYVGKAK L+ RLSSYF S L R T Sbjct: 1 MADPSTYRPAPGTIPDAPGVYRFHDAEGRVIYVGKAKSLRSRLSSYFADLSGLHPR-TRQ 59 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V + TV TE EAL LE+++IK Y PR+NV RDDKSYP + ++ + PRL + Sbjct: 60 MVTTATGVRWTVVGTEVEALQLEYSWIKEYDPRFNVRYRDDKSYPVLAVTLHEDFPRLYV 119 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRC 174 RG + YFGP+ + +A+RETL +L ++FP R C V++ S RPCL IG+C Sbjct: 120 TRGPRRKGVRYFGPYAHAWAIRETLDMLLRVFPARTCSAGVFKRHSQIGRPCLLGYIGKC 179 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 PCV G V +E+ + VE F +G+ D ++ +L M AS+ LEFE AAR+RD ++ Sbjct: 180 SAPCV-GRVDADEHRRIVEDFCDFFAGRTDTLIRKLDREMRQASEELEFERAARLRDDLE 238 Query: 235 AVRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 A+RR EKQ V G D DVI A D A V V IR G+V G R + T + Sbjct: 239 ALRRAMEKQAVVLGDGTDADVIAFADDELAAAVQVFHIRGGRVRGQRGWVIDKVEETGTA 298 Query: 294 EVVETFVGQFYLQGSQM--------RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQT 345 + E F+ QFY + + + +P E+L+ + + + LS L G ++ V+ Sbjct: 299 ALAERFLTQFYGEQAALAEQADAGGTPVPREVLVPELPPECEAITEWLSGLRGGRVAVRV 358 Query: 346 KPRGDRARYLKLARTNAATALTS-KLSQQSTVHQRLTALASV---LKLPEVK-RMECFDI 400 RGD+ ++ NA A T KL + + R AL + L L R+EC D+ Sbjct: 359 PQRGDKRALMETVERNAKEAFTQYKLRRAGDLTARSAALQELQDALGLDTAPLRIECIDV 418 Query: 401 SHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIP 460 SH G VAS VVF+ P ++EYRR+ + G D ++ +V+RRR+ + + ++ P Sbjct: 419 SHVQGTDVVASLVVFEDGVPRKSEYRRFAVREGAEGGDVGSIAEVVRRRFARYLKETAPP 478 Query: 461 DVILIDGGKG 470 +GG G Sbjct: 479 Q----EGGNG 484 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 10/145 (6%) Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 P++++IDGG Q A + EL ++ ++G+AK LE ++ E E Sbjct: 561 PNLLVIDGGAPQANAAADALTELGIT----DVAVIGIAKR------LEEVWLPDEAEPVI 610 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 LP S AL+++Q +RD +HD AI HR+KR+K +S+L++I G+G RR LLK+ G L Sbjct: 611 LPRTSEALYLLQRVRDAAHDFAIRYHRQKRSKRMKSSTLDSIPGLGEARRTALLKHFGSL 670 Query: 580 QGLRNASVEEIAKVPGISQGLAEKI 604 + LR A+VEEI+ VPG Q AE + Sbjct: 671 RRLRQATVEEISAVPGFGQRTAETV 695 >UniRef50_Q83NI9 UvrABC system protein C n=2 Tax=Tropheryma whipplei RepID=UVRC_TROW8 Length = 607 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 199/608 (32%), Positives = 310/608 (50%), Gaps = 36/608 (5%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHT 73 + +PGVYR D G ++YVGKAK+L+ RL SYF + R+ +++ +++ T Sbjct: 9 IPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVAD 68 Query: 74 ETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPF 132 + EAL LE+++IK + P NV L+DDK+YPF+ ++ G+ PRL + R K +FGP+ Sbjct: 69 DIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITR-RKIQYATHFGPY 127 Query: 133 PNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 P + +RET++LL KIF IR C + Y+ PC + QI +C GPC + +Y Sbjct: 128 PKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSLK-TTHLQYQ 186 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-SNT 248 ++++ + FL G+ +L L +M AS+N E+EEAA +RD+IQA + V + V + Sbjct: 187 KRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDE 246 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D I V D +A V + G++ S+ + SE++ + Q Y + S Sbjct: 247 TVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVYDKLS 306 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELA---GRKINVQTKPRGDRARYLKLARTNAATA 365 LP I+L S + L+ L++ +I + P R L+ + NA + Sbjct: 307 ----LPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERRLLETVKDNALSE 362 Query: 366 LT----SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 L + S + H+ L L L L + R+ECFDISH G T S VVF+ P Sbjct: 363 LERHRLRRSSDYTERHRSLFELQKYLNLNSLPVRIECFDISHLSGTNTSGSMVVFENGEP 422 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRY----GKAIDDSKIPDVILIDGGKGQLAQAK 476 ++ YR +NI I +D A+M ++ RR A D P +++IDGGK QL+ A Sbjct: 423 KKSAYRHFNI-HIDQNNDTASMFSLICRRLRSLESVAQDSPDYPHLMIIDGGKPQLSAAV 481 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 E+ L + V + R LE L+ LPP+S +L ++Q IRDE Sbjct: 482 GALQEVG--------LKIPVFALSKR---LEELWSPGVKTSLILPPNSESLFLLQKIRDE 530 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 SH A+ ++R + TS L I G+G ++ LL+ +R AS+E+I+ +PG Sbjct: 531 SHRFALKQQTRRR-EAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISALPGF 589 Query: 597 SQGLAEKI 604 AEKI Sbjct: 590 GVKTAEKI 597 >UniRef50_Q2SSM4 UvrABC system protein C n=5 Tax=Mollicutes RepID=UVRC_MYCCT Length = 584 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 188/589 (31%), Positives = 303/589 (51%), Gaps = 39/589 (6%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHT 73 +T++PG Y + VIYVGKAK+LKKR+S+YF + + KT L+ +I + + Sbjct: 10 LTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYF-NKAYNIKTTRLIREITHLKYFIVDN 68 Query: 74 ETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFP 133 E E+LLLE N IK Y+P+YNVLL DDK+YP+I ++ P R + +GP P Sbjct: 69 EKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIIITNQKDPMYKYVRKYEKKALRNYGPLP 128 Query: 134 NGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVE 193 G R L LQ++FP+R C+ + +PCL Y + +C G C + V Y Q++ Sbjct: 129 IGSNARSILLTLQRLFPLRMCKGDL----KKPCLYYHLNQCSGACFKT-VDSSYYEYQIK 183 Query: 194 YVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS-NTGDDL 252 V F G+ +QV L+ +M+ AS NL+FE+A RI+DQI ++ +T KQ V T ++ Sbjct: 184 QVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQITSLDFITAKQNVDIVTNKNI 243 Query: 253 DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRT 312 DV+ + C +LF R G++ Y G +L E++ +++ Q Y + Sbjct: 244 DVVNYEINEEKICFVMLFYRLGQLTYKDEYIQNYE-GQDLDELLNSYLQQIY-----QKN 297 Query: 313 LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQ 372 L ++LL N D L ++L E + N Q ++KLA+ NA +L + Sbjct: 298 LYPDVLLIPNEIDLLDLDENLLEFSSYSFNNQDDI------FIKLAKQNAVDSLNKSILS 351 Query: 373 QST-------VHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 + + +L ++++ K P KR+E FDIS+ + +C+V+ P+R E+ Sbjct: 352 NNVNSGDELEILDQLQQISNINKYP--KRIEIFDISNIYNQFITGACIVYINAKPVRNEF 409 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDV 484 R+YNI DYA M +L +R+ K I + ++PD+I++DGG Q+ AK V +L++ Sbjct: 410 RKYNIDS-QYTSDYARMKFMLEKRFLKRIKEKEQLPDLIIVDGGIIQIHAAKEVLNKLNL 468 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 + ++G++K + K FE + + L +Q DE +A G Sbjct: 469 KIN-----VIGLSKDNNHKTRYLIDIFEQTIDIKNFKKLYNFLTSLQIRVDE---YAKSG 520 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RKK N L I+GVG K L K+ + ++NAS +E+ K+ Sbjct: 521 FRKKYHNQLNDQIL-LIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKI 568 >UniRef50_A9EYQ9 Excinuclease ABC, subunit C n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EYQ9_SORC5 Length = 742 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 174/449 (38%), Positives = 245/449 (54%), Gaps = 19/449 (4%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK--TEALVAQIQQIDVTVTHT 73 + PG Y D G V+YVGKAK L+ R+ SYF+ + + + L + ++ VT T Sbjct: 23 TTPGCYLFIDKAGAVVYVGKAKSLRSRVRSYFQESGSDARYFIPILRKIVADLETVVTAT 82 Query: 74 ETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH---PRLAMHRGAKHAKGEYFG 130 E EA +LE+ +K ++PR+NV LRDDK F+ L DT P L R K YFG Sbjct: 83 EKEAAVLENELVKQHKPRFNVKLRDDKD--FLCLKLDTQKAWPMLETVRRPAPDKARYFG 140 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+ + + R TL L+ K F +R C ++ +R RPCLQYQI RCL PCV V E Y + Sbjct: 141 PYHSATSARRTLHLVNKHFQLRTCSDTEMASRRRPCLQYQIKRCLAPCVMD-VDRELYTE 199 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 V V LFL G+ D++ +L +RM AS+ LEFE AA RDQ++AV V E Q V D Sbjct: 200 MVRSVALFLEGRHDELTGELTTRMRDASRELEFERAAIYRDQLRAVEAVREAQRVVYVKD 259 Query: 251 -DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL--SEVVETFVGQFYLQG 307 D DV+G+ + + V V+ +R+G+V + S+ + EL EV+ F+ ++Y G Sbjct: 260 VDQDVVGIYREGTLVEVEVILVRRGRVTDTLSFSLR---NMELPDDEVLGGFLNEYY--G 314 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 T+P E+L+ +A+ L + GRK+ + RG R LK+A NAA A Sbjct: 315 VASTTIPDEVLVPVLPDGAEGVAEWLGDRRGRKVALFVPQRGPRVDLLKMANENAAHAFR 374 Query: 368 SKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 K + RL + L+LP + +R+EC DISH G TV S V P + YR Sbjct: 375 EKQRSSDDLEARLEEIRERLRLPTLPRRIECCDISHLGGGDTVGSIVALLDGQPDKKRYR 434 Query: 427 RYNITGITPGDDYAAMNQVLRRRY--GKA 453 +N+ + GDDYAAM +VL RR+ GKA Sbjct: 435 SFNVKSVADGDDYAAMYEVLSRRFRRGKA 463 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 13/146 (8%) Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL-LLGVAKGADRKAG---LETLFFEPE 514 +PD+ ++DGG+GQL A + +L + H L ++G+AK + + G ++ ++ + Sbjct: 568 LPDLFVVDGGRGQLQVALSAARDLGL-----HGLPIVGLAKERETQTGEKLVDRVYLPGQ 622 Query: 515 GEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR-AKVKN-TSSLETIEGVGPKRRQML 572 G L S AL + RDE+H A H +KR K + S +E I G+G R L Sbjct: 623 KNGIPLRSTSSALFFLARARDEAHRFA--NHARKRLGKARRLRSEIEDIPGLGSAVRTAL 680 Query: 573 LKYMGGLQGLRNASVEEIAKVPGISQ 598 L+ +G ++G+R A+ +I V G+++ Sbjct: 681 LRELGSMEGVRRATDAQILGVTGVTK 706 >UniRef50_C5ADA8 UvrABC system protein C (Protein uvrC) n=4 Tax=Proteobacteria RepID=C5ADA8_BURGB Length = 756 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 128/281 (45%), Positives = 189/281 (67%), Gaps = 2/281 (0%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F+ K L + PGVYR YDA G+V+YVGKA++LKKR+SSYF S + +V +I Sbjct: 29 FEPKPVLAQLPHLPGVYRYYDAAGSVLYVGKARNLKKRVSSYFTKTQLSPRIAMMVTRIA 88 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RGA Sbjct: 89 RIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHAFPRMAYYRGAVDR 148 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV G + Sbjct: 149 KNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCV-GAID 207 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +YA+ V FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ V +Q Sbjct: 208 AADYARDVANASRFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQA 267 Query: 245 VS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP 284 + + D+D++ V G CV++ +R G+ LG ++YFP Sbjct: 268 IEVGSESDVDILAVVAHGGRVCVNLAMVRGGRHLGDKAYFP 308 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/344 (45%), Positives = 202/344 (58%), Gaps = 37/344 (10%) Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRA 352 +EV+E F+ Q YL +P +++ L+++ L+ D L E AG K+ V +P+G + Sbjct: 421 TEVLEAFIAQHYLGNR----VPPVLVVSHALANRELI-DLLVEQAGHKVAVLRQPQGQKR 475 Query: 353 RYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQT 408 +L +A NA AL LS+Q + R ALA VL R+ECFDISHTMGE T Sbjct: 476 AWLAMAEQNARLALARLLSEQGSQQARTRALAEVLGFEADDLAQLRIECFDISHTMGEAT 535 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-------------- 454 ASCVVF + EYRRYNITGITPGDDYAAM QVL RRY K + Sbjct: 536 QASCVVFHHHKMQSGEYRRYNITGITPGDDYAAMRQVLMRRYEKMVEQAGEAAAADAQAG 595 Query: 455 ---DDSK-------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKA 504 D ++ +P+++LIDGGKGQ+ A+ VF EL + +L+GVAKG RK Sbjct: 596 IDGDATRASASAALLPNIVLIDGGKGQVEVARQVFTELGLDCS----MLVGVAKGEGRKV 651 Query: 505 GLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGV 564 GLETL F L +S AL ++ IRDE+H AI G R KRAK + TS LE +EGV Sbjct: 652 GLETLIFADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGV 711 Query: 565 GPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G KRRQ LL GGL+G+ ASVEE+A V GIS LAE+I+ L Sbjct: 712 GAKRRQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYRQL 755 >UniRef50_B5PNJ7 Anaerobic glycerol-3-phosphate dehydrogenase subunit A n=1 Tax=Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 RepID=B5PNJ7_SALET Length = 364 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 131/136 (96%), Positives = 133/136 (97%) Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 AK VFAELDV WDK+ PLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR Sbjct: 229 AKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 288 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DESHDHAIGGHRKKRAKVKNTS+LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP Sbjct: 289 DESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 348 Query: 595 GISQGLAEKIFWSLKH 610 GISQGLAEKIFWSLKH Sbjct: 349 GISQGLAEKIFWSLKH 364 >UniRef50_B9LUM9 UvrABC system protein C n=9 Tax=Halobacteriaceae RepID=UVRC_HALLT Length = 592 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 202/612 (33%), Positives = 312/612 (50%), Gaps = 61/612 (9%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTET 75 ++PGVY+ + AG T +YVGKA +L+ R+ SY ++ S + +V + +I+ VT TET Sbjct: 15 TEPGVYQ-FRAGETTLYVGKAVNLRNRVRSY--ADPRSGRIRGMVGRADRIEFAVTDTET 71 Query: 76 EALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNG 135 +ALLLE N IK +PRYNV L+DDKSYP + ++ PR+ + R + Y GPF + Sbjct: 72 QALLLEANLIKRLRPRYNVRLKDDKSYPLVAITDHPVPRIEVTRDPEEGAVAY-GPFTSK 130 Query: 136 YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYV 195 V + ++ + +R C + Y NR RPCL Y++G C PC G + E YA+ V Sbjct: 131 GRVETVVKAIRDEYRLRGCSDHKYANRDRPCLDYEMGICSAPCT-GEIDPESYAEDVAAA 189 Query: 196 RLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK--QFVSNTGDD-- 251 R F G+ + L RME A++N EFE AA +RD+++AV + + VS+ DD Sbjct: 190 RRFFEGETGVLADPLRRRMEAAAENAEFERAANLRDRLEAVEAFHGEGGEAVSDHSDDRT 249 Query: 252 LDVIGVAFDAGMACVHVLFIRQGKVLG-SRSYFPKV---------------PGGTELSEV 295 +DV+ A + A V L +G+++ SR P + V Sbjct: 250 VDVLAAAVEGDTARVARLHSERGQLVDRSRHRLDAAAVGDDGEGDEDGFADPDANTPAAV 309 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + F+ Q+Y + R P ILL SD D + L ++V+ G A+ + Sbjct: 310 LSAFLTQYYAE----REFPDAILLAERPSDP----DVIDWLEAEGVSVRVPGAGREAKLV 361 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 +LA NA ++ + AL L + R+E FD+SH G V S V F Sbjct: 362 ELALKNA--------RKRGGREDPVGALGERLGIDRPARIEGFDVSHAQGTAVVGSDVCF 413 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI---DDSKIPDVILIDGGKGQL 472 ++YRR +T DDYA M +++R R +A+ DD PD++LIDGG GQL Sbjct: 414 VDGSAETSDYRRKKLTDRN--DDYANMRELVRWRAERAVAGEDDRPDPDLLLIDGGGGQL 471 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A++ AE WD ++ +AK E L P G P D+P LH++Q Sbjct: 472 GAARDALAE--TGWDVP---VVALAKA-------EELVVTPTGT-RRWPDDAPELHLLQR 518 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H A+ H+ R +VK L+ + GVGP+ R+ LL+ G ++ +R+AS++++ Sbjct: 519 VRDEAHRFAVSYHQTVRDEVKTV--LDDVPGVGPQTRRRLLRRFGSVESVRDASLDDLTD 576 Query: 593 VPGISQGLAEKI 604 V G+ A+ + Sbjct: 577 VDGVGDATADTL 588 >UniRef50_A4ECP7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECP7_9ACTN Length = 601 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 186/588 (31%), Positives = 296/588 (50%), Gaps = 48/588 (8%) Query: 54 RKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTH 112 +K ++ + D V TE EAL+LE N I Y P +NV L+DDKSYPFI ++ D Sbjct: 12 QKIPLMMQLVASFDYIVVETEHEALVLERNLIGQYHPYFNVDLKDDKSYPFIAITKSDLF 71 Query: 113 PRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPI--------RQCE--------- 155 P + R YFGP+ + A RET+ L+K+ PI R+C Sbjct: 72 PAIKYTRERHKPGTRYFGPYTDSRAARETIDTLRKVIPICSASCAEWRRCRRIVESHKGE 131 Query: 156 ----NSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLI 211 N + RPC Y +GR G CV G +S +YA+ V+ V FLSG V+ +L Sbjct: 132 EDIVNMICAQNGRPCFDYHVGRGPGACV-GAISPADYAKNVKRVERFLSGHRKDVVDELT 190 Query: 212 SRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLF 270 S M A++ L+FE AAR++ +++ +R + ++Q V + D+DVIG + ++ V Sbjct: 191 SEMTEAAETLDFERAARVKRRLEVIRGLDDRQQVVFPSSVDIDVIGFYREETISAACVFV 250 Query: 271 IRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLA 330 +R+G+ + + + + E+ F+ ++Y + + +P EI L L D L Sbjct: 251 VREGRTVRTCEFILDKGLDVDEEELQSGFLKRYYDETAD---IPAEINLSVELEDAEALG 307 Query: 331 DSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP 390 + L+ R ++ RG++ R L +A NA AL + + R L+ Sbjct: 308 EWLAGKRERSCHLHRPQRGEKHRLLDMASKNARHALMRYMMRTGYADDRTNQALLELESA 367 Query: 391 EVK-----RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG-ITPGDDYAAMNQ 444 R+ECFDIS G TVAS VVF + +YRR+ I + +D+ +M++ Sbjct: 368 LALPAPPLRIECFDISTLHGTFTVASMVVFTNGRADKGQYRRFKIQAELDEANDFVSMSE 427 Query: 445 VLRRRYG-KAIDDSKI---PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGA 500 VL RRY + + D + PD++++DGGK QL A L + + G+AK A Sbjct: 428 VLGRRYAPERMADERFGSRPDLLVVDGGKPQLTAAIKQLEALGLDIP-----VCGLAK-A 481 Query: 501 DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET 560 D E +F + LP S +L++I+ +RDESH AI HR+ R K S L+ Sbjct: 482 D-----EEVFVPWDETPVVLPTGSASLYLIKQVRDESHRFAITFHRELRDKAMTVSVLDD 536 Query: 561 IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + GVGP R++ ++++ G ++ LR AS +EIA+V G+ +A+ + +L Sbjct: 537 VPGVGPTRKRAIMRHFGSMKRLRAASEQEIAEVRGVPADVAKAVHEAL 584 >UniRef50_D0WMS6 Excinuclease ABC subunit C n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMS6_9ACTO Length = 734 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 169/480 (35%), Positives = 252/480 (52%), Gaps = 37/480 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M+D + + +QPGVYR D G V+YVGKAK+L+ RLSSYF+ S + A+ Sbjct: 1 MADPRQYRPEQGAIPTQPGVYRFLDGEGRVLYVGKAKNLRARLSSYFQDPAGLSDRIRAM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V + + V +E EAL LE+ +IK + P +NV+ RD+KSYP++ +S G+ +PR+ + Sbjct: 61 VYTAEAVKWVVVGSEVEALTLEYLWIKEFTPTFNVVFRDNKSYPYLAVSLGEEYPRVWVT 120 Query: 119 RGAKHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRC 174 R +H KG Y GP+ +A+RETL L +FP+R C S + R RPCL IG+C Sbjct: 121 R-QEHRKGTRYLGPYTKVWAIRETLDQLLSVFPMRSCTKSQFNQARRLGRPCLFGHIGKC 179 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 PC+E + EE + +R F+ G + + RM A+ E+E AAR+RD+I Sbjct: 180 SAPCIERVTPEEHRETAMSLIR-FMEGGGSKAIATRRKRMLEAANAEEYETAARLRDEIS 238 Query: 235 AVRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 A+ V E+ V N D+D+ G+AFD A V V ++R G++ G +++ GG ELS Sbjct: 239 ALEAVNERNVIVLNENLDVDIFGIAFDEIEASVQVFYVRGGRIRGQQAWISDEIGGLELS 298 Query: 294 EVVETFVGQFY--------------------LQGSQMRTLPGEILLDFNLSDKTLLADSL 333 E+V V Q Y + + +P EI + D L L Sbjct: 299 EIVSNLVLQVYGDVKFDEVVAVPEASRSVDDRAHTPLGAIPSEIWVPGLPEDALELQKWL 358 Query: 334 SELAGRKINVQTKPRGDRARYLKLARTNAATALTS-KLSQQSTVHQRLTALASVLKLPEV 392 +E G + ++T RGD+A+ R NA AL KL++ + R AL + E+ Sbjct: 359 AERRGGTVRLKTPRRGDKAKLAHTVRLNAEQALARHKLARAGDITVRSQALEELRDALEL 418 Query: 393 K----RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGIT---PGDDYAAMNQV 445 R+EC+D+SHT G VAS VVF+ +A+YR + + G DD AAM++V Sbjct: 419 DRAPLRIECYDVSHTQGTHQVASMVVFEDGLAKKADYRHFIVRGPDGEGAADDTAAMDEV 478 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 95/176 (53%), Gaps = 20/176 (11%) Query: 434 TPGDDYAAMNQVLRRRYGKAIDDSKI---PDVILIDGGKGQLAQAKNVFAEL--DVSWDK 488 TPG+D A + + R G+ + PD+I++DGG Q+ A+ V E DV Sbjct: 566 TPGEDEAGGD--VPRVAGQPSAPRRFAYKPDLIVVDGGLPQVNAAQRVVEETGADVR--- 620 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 ++G+AK LE ++ E LP SP+L ++Q +RDESH AI HRKK Sbjct: 621 ----IVGLAKR------LEEVWIPGEDFPVVLPRRSPSLRLLQQLRDESHRFAITFHRKK 670 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 RAK S+L+ + G+G +++ LL +G L ++ AS EE+ KVPGI LA I Sbjct: 671 RAKAMTRSALDAVPGLGAAKQKALLGSLGSLAKIKAASQEELLKVPGIGPALARAI 726 >UniRef50_A8F4P7 UvrABC system protein C n=6 Tax=Thermotogaceae RepID=UVRC_THELT Length = 558 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 202/598 (33%), Positives = 312/598 (52%), Gaps = 60/598 (10%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSN-LASRKTEALVAQIQQIDVTVTHTET 75 PGVY Y IYVGKAK L+ RL SYF RSN S+K +A+V + +++D V E Sbjct: 14 PGVYIFYGKNKEYIYVGKAKRLRNRLLSYFNRSNGKYSKKIQAIVNEAEELDYIVVSNER 73 Query: 76 EALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNG 135 EALLLE N I ++P+YNV+L+D + YP+I ++ + P + + R + GEYFGP+ + Sbjct: 74 EALLLEANLIFNHKPKYNVMLKDAEFYPYIEITKELFPAVQIVR-IRSTGGEYFGPYTDV 132 Query: 136 YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYV 195 V++ + LQ+++ R C + ++ ++PC+++ + RC PC L + ++ + Sbjct: 133 KFVKDLIDCLQQVYQFRTCRRDMSKS-TKPCMEFYMHRCAAPCTGDLEPDSYINSSIQPL 191 Query: 196 RLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTGDDLDV 254 R L+G + L + +M+ ++ ++FE AA+ RD + V ++Q V +LDV Sbjct: 192 RRVLNGDISETLDLIEEKMKKHAKMMDFENAAKYRDLLVKFENVMQRQGVVLEQWRNLDV 251 Query: 255 IGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL-SEVVETFVGQFYLQGSQMRTL 313 IG F A VL IR G V+G SY EL S +E F+ +Y+ G L Sbjct: 252 IG-RFKNSYA---VLRIRGGHVVGKLSY--------ELDSTKLEDFIFHYYMVGKN--EL 297 Query: 314 PGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD-RARYLKLARTNAAT-ALTSKLS 371 P ++L+ N++ + GR PR L AR NA A TS L Sbjct: 298 PEAVILERNINFDAEI------YFGR-------PRDKLEEELLHKARENAKNQAYTSGLR 344 Query: 372 QQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI 430 + L + VL L ++E FD+SH G+ TVAS VVF P + EYR Y Sbjct: 345 KDL-----LNKMVKVLNLNRYPMKIEGFDVSHLHGKLTVASVVVFFDGLPRKNEYRHYRF 399 Query: 431 TGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH 490 DD+ + ++++RRY K ++PD+I +DGG GQ+ E+ D Sbjct: 400 NS-DRIDDFLTLKELVKRRYSK----HELPDMIFVDGGTGQINAVVEALMEIGKECD--- 451 Query: 491 PLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA 550 ++G+AK + + T F E LP DSP L + IRDE+H A HRK R Sbjct: 452 --VVGLAK---QNEIVCTRFGE-----LILPFDSPILRTLVRIRDEAHRFANSFHRKLRR 501 Query: 551 KVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 K +S L+ I G+GPKR++ L++ G ++ +R+A+++EIA+V G S+ LA +I L Sbjct: 502 KSALSSILDEIPGIGPKRKKKLIEAFGSVKNIRSATLQEIAEVLG-SRKLAAEILSRL 558 >UniRef50_B9KC51 UvrABC system protein C n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC51_THENN Length = 503 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 190/560 (33%), Positives = 295/560 (52%), Gaps = 68/560 (12%) Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 + + ++ V TE EALLLE N I+ Y+P+YNV L+D + YP+I +S D P + + + Sbjct: 1 MEEADDLETIVVTTEKEALLLEANLIRKYRPKYNVRLKDTEFYPYIRISNDDIPYVEIVK 60 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + G YFGP+ VR+ L LQ+I R C+ + R + RPC + + RC+GPC Sbjct: 61 -RRLKDGTYFGPYTTVRFVRDLLETLQRILGFRTCKFDLNRVK-RPCFLFHLKRCVGPCA 118 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G V + E A +E +R FLSG V L +ME S+ L+FE AA+ RD + + V Sbjct: 119 -GNVDQHEEA--IEKLRDFLSGNMRDVFDYLRRKMELHSRMLDFENAAKYRDLLLNLSSV 175 Query: 240 TEKQFVSNTGDDLDVIGVAFDAGMAC---VH------VLFIRQGKVLGSRSYFPKVPGGT 290 E Q GVAF+ + C VH VL +R G ++G S+ ++ GG Sbjct: 176 LESQ------------GVAFEEKINCDVVVHAQGLFVVLRVRDGYLIGKISF--EMEGGN 221 Query: 291 ELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD 350 ++ F+ ++Y+ G +P ++++ +L + + + KPR Sbjct: 222 -----LDDFIREYYVSGRG--DVPNSLVVESDLEEMDYTSLGFQYVG--------KPRSQ 266 Query: 351 RAR-YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQT 408 + L+ AR N L ++LS + + L L +L L E V R+E D+SH G+ T Sbjct: 267 LEKDLLEKARKN----LETELSMRGLKKEALKELMKLLNLKEFVYRIEGIDVSHLQGKHT 322 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGG 468 VAS VVF+ P ++EYRRY + P DDY A+ +V+RRRY K +P+++ +DGG Sbjct: 323 VASLVVFEDGLPKKSEYRRYRLNLERP-DDYEAIREVVRRRYSK----HPLPNLLFVDGG 377 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 +GQ+ A +L K P++ G+AK + E + LP D P L Sbjct: 378 RGQVNAALEALKDLG----KACPVV-GLAKKEE--------IIVTEDKDIVLPQDHPVLR 424 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 ++ +RDE+H A+ HR++R K S L+ I GVGP R++ LL++ G ++ +R+ASVE Sbjct: 425 LLIQVRDETHRFAVNYHRRRREKESLRSVLDEIPGVGPIRKKKLLEHFGSIESIRSASVE 484 Query: 589 EIAKVPGISQGLAEKIFWSL 608 EIA+V G S +A +I L Sbjct: 485 EIARVIG-SAEVARRILERL 503 >UniRef50_Q2NJ78 UvrABC system protein C n=3 Tax=Candidatus Phytoplasma RepID=UVRC_AYWBP Length = 589 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 188/614 (30%), Positives = 323/614 (52%), Gaps = 50/614 (8%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF--RSNLASRKTEALVAQIQQIDV 68 +KT+ PG Y + T+IYVGKAK+LKKR+ SYF R+NL KT L+ + Q Sbjct: 8 IKTLPPNPGCYLFKNTKDTIIYVGKAKNLKKRVQSYFTKRNNL---KTAMLIEETQDFFY 64 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE- 127 +T+ E EAL+LE N IK + P+YN L DDK+YP+I ++ + HP+L + R + G+ Sbjct: 65 IITNNEQEALILEANLIKTHTPKYNFKLLDDKTYPYIEITKEKHPQLKISRFKQIPPGKI 124 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 FGP+PN + +ETL LL ++P+R+C+ + +PCL + I +CLG C ++ Sbjct: 125 IFGPYPNLKSTKETLKLLHLLYPLRRCQLA----SKKPCLHFHINQCLGACAGKTIN--- 177 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y ++ + FL G +L +L M+ AS+ + +E+A RD I ++++ T+KQ +SN Sbjct: 178 YKPNIDAITKFLKGNIKDILKKLHHLMQKASEKMFYEKAQEYRDIIDSIKQTTKKQLISN 237 Query: 248 TG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGS-RSYFPKVPGGTELSEVVETFVGQFYL 305 + D+ AF+ + +L IRQG ++ S RS F V + E + T++ +Y Sbjct: 238 QKLKNCDIFAYAFNQDQIAIQILKIRQGNIVDSYRSVFSYVGF---VCENILTYLNCYY- 293 Query: 306 QGSQMRTLPGEILL----DFNLSDKTLLADSLSE-LAGRKINVQTKPRGDRARYLKLART 360 Q P I+ D N+ +T+ +L E + K+N+ K GD+ + LA Sbjct: 294 ---QKNIKPDIIITGKNQDENILQQTITNQTLLEQILQTKVNIYHK--GDKKKLFLLALK 348 Query: 361 NAATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 NA L+ S+ + + L LA + ++KR++ FD S G+ VA+ +VF+ Sbjct: 349 NAQNDLSHNNLIYQSKDQKIQEALNKLAIIFN-KDIKRIDVFDNSQLFGKAFVAARIVFN 407 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQA 475 + YR ++I G P ++Y A + L R Y K + ++ D+IL+DG QL Q+ Sbjct: 408 HFEFDKKLYRTFHIKGELP-NEYQAFEETLTRCYNKGKEAENDATDLILVDGSLVQLRQS 466 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + +L + + LG + ++ + F+ E L D H ++ + + Sbjct: 467 QKTLKKL------GYEIPLGALQKNNKHQLTHLVTFQ---EKLMLEQDPNLFHFLKSLSE 517 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E H A+ HRK + K+ ++L I+GVG R++ +L + L+ ++ A++++ K+ Sbjct: 518 EVHRFAVSFHRKTKKKLDYKTTLSNIKGVGVVRKKAILNHFESLEAIKKATLQDFQKI-- 575 Query: 596 ISQGLAEKIFWSLK 609 G+ +K+F +K Sbjct: 576 ---GINQKLFLLIK 586 >UniRef50_Q14NX3 Putative uvrc protein excinuclease abc subunit c n=1 Tax=Spiroplasma citri RepID=Q14NX3_SPICI Length = 593 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 193/625 (30%), Positives = 311/625 (49%), Gaps = 50/625 (8%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 MS++ K ++ + ++PG Y Y+ V+YVGKAK+L+ R+SSYF + + + KT LV Sbjct: 1 MSEKLSLKEQVEILPAKPGCYLFYNNYHQVLYVGKAKNLRSRVSSYF-NKVYNYKTTRLV 59 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 +I +++ +T TE EAL+LEHN IK Y+P+YN+LL DDK YP+I ++ + P+ R Sbjct: 60 QEIVRLETIITKTEKEALILEHNLIKQYKPKYNILLNDDKHYPYIVITKEKDPQYLYVRN 119 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 Y+GPFP G RE + +L++++P+R+C+ N +PCL Y I +C G CV+ Sbjct: 120 IHQKYARYYGPFPEGSHAREIIKVLERLYPLRRCKG----NLGKPCLYYHINQCSGACVK 175 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 VS + Y + ++ V F G + L RM A+ NL+FEEA +++ I+ + Sbjct: 176 T-VSPDYYIKMIKKVHSFFKGNFTETKKLLEKRMLQAADNLQFEEAHKLKLLIRNLDWTL 234 Query: 241 EKQFVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 Q V N DDLDVI + A + LF R GK+ + + + E+ Sbjct: 235 SSQTVEMLNQNDDLDVISLYQTAEHLVLTTLFYRAGKLSYKDYEYYHLDFAEDCQELYRL 294 Query: 299 FVGQFYLQGSQMRTLPGEILLD--FNLSDKTLLADSLSELAGRKINVQTKPRGDRAR-YL 355 ++ Y Q LP +I+++ L + LL D N P+ + + Sbjct: 295 YLQNIY----QKNILPTKIIVNEIIALPELNLLFD----------NRVFHPKTPIEKTIM 340 Query: 356 KLARTNAATALTSKLSQQSTVHQR-------LTALASVLKLPEVKRM-ECFDISHTMGEQ 407 KLA N+ + Q T QR L L +L L E+ + E DI++ E Sbjct: 341 KLATENSYESYV----QYQTTAQRELNNAEVLKELQMLLDLSELPYLIEMIDIANINDEF 396 Query: 408 TVASCVVFDANGPL-RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILI 465 +V+ NG L R +YR+YN+ I DD + V+ RRY K I + + +P++I++ Sbjct: 397 VTGGVIVY-KNGRLSRNDYRKYNLE-IPDQDDTHRIAAVVTRRYQKVIQEEQALPNLIIM 454 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGG Q+ A+LD++ ++G+ K K + E L S Sbjct: 455 DGGIQQVNACLKELAKLDLAIP-----VIGLVKNNQHKTD---HLLNLKKEKIYLDKSSR 506 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 + I+D+ H AI R+++ K TS LETI G G +R ++L + + ++ A Sbjct: 507 LFLFLTRIQDDVHHFAITSFRRRQTKALTTSILETIPGFGKQRIKLLNHHFESIGAIKKA 566 Query: 586 SVEEIAKVPGISQGLAEKIFWSLKH 610 S E+ +V S+ L E + L+H Sbjct: 567 SDAELYQVLH-SKKLIENLRKFLEH 590 >UniRef50_UPI0001977D11 excinuclease ABC subunit C n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001977D11 Length = 627 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 187/618 (30%), Positives = 309/618 (50%), Gaps = 65/618 (10%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF---------RSNLASRKTEALVA 61 L+ + +QPG+Y+ +D ++YVGKAK+LK R+ SYF ++NL+ R +V+ Sbjct: 22 LQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQR-IALMVS 80 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRG 120 Q+ +I +T ++ +AL+LE++ IK +P+YN+LLRDDK+YP+I++ + T PR + R Sbjct: 81 QVAKIHTLLTQSQEDALILENSLIKSLKPKYNILLRDDKTYPYIYIDTSATFPRFEITRK 140 Query: 121 AKHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 A +K EYFGPF +G RE L L P+ Q ++ + + C+ +QI +C PC Sbjct: 141 ALQSKHIEYFGPFVSG--ARELLDSLYDALPLVQKKSCL--KGKKACIFHQIHKCPAPC- 195 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQ--VLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 E +S+ +YA+ + + F+ DD+ ++ L S+M+ S NL+FEEAA+IRD+IQ ++ Sbjct: 196 ENKISQSQYAEYITQAKAFI---DDRKGLIEILESKMQILSHNLQFEEAAKIRDRIQKLK 252 Query: 238 RVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + + + D D+ + + +LFIR G+++ S F E+ Sbjct: 253 TLKTQSIIDIMSGDYDIFLLDSAGQNHILMMLFIRNGRIVSSDFSFIH-------QEIHS 305 Query: 298 TFVGQFYLQG------SQMRTLPGEILL---DFNLSD-KTLLADSLSELAGRKINVQTKP 347 + Q Y Q + + P EIL+ DF D K L L + + Sbjct: 306 QNLAQLYTQALLNHYKTPLPLPPKEILIPHFDFQDKDEKDDLQKILQAQTQSHLKITQPQ 365 Query: 348 RGDRARYLKLARTNAATALTSKLSQQSTVHQR---LTALASVLKLPEVK-RMECFDISHT 403 +G + L+LA+ NA LT +Q L AL + L +V R+E FD SH Sbjct: 366 KGTKYNLLQLAKKNAQEILTLHTKEQKNAQNENTTLYALKDLCNLSQVPYRIEIFDTSHH 425 Query: 404 MGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVI 463 G V VV++ +R+ YRR+ + D+Y+ M+++L RR K + + PD+ Sbjct: 426 SGSHNVGGMVVYENGEFIRSAYRRFELHS---SDEYSQMSEMLTRR-AKKFESNPPPDLW 481 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK-----GADRKAGLETLFFEPEGEGF 518 L+DGGK Q+ A ++ + + D ++ +AK A R G + F Sbjct: 482 LLDGGKAQINLALDILKSVGANVD-----IIAIAKMKYNAKAYRAKGNALDILRTQNAEF 536 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAK------VKNTSSLETIEGVGPKRRQML 572 L + L Q +RDE H +AI HR K+ K ++ S +++ + + L Sbjct: 537 KLSTNDKRLQFCQKLRDEVHRYAITYHRNKKQKDIHKIQIQKGSDMDS--SYSKAQIKQL 594 Query: 573 LKYMGGLQGLRNASVEEI 590 L Y G +NA E+I Sbjct: 595 LDYFGSFHAFQNAPKEQI 612 >UniRef50_Q8EWS6 UvrABC system protein C n=1 Tax=Mycoplasma penetrans RepID=UVRC_MYCPE Length = 589 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 185/606 (30%), Positives = 308/606 (50%), Gaps = 36/606 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR--KTEA 58 M++Q K LK + +PG Y D G VIYVGKA DL R+ YF L R KT+ Sbjct: 1 MNEQIKDK--LKKIPHKPGCYLWKDKNGIVIYVGKAVDLANRIKQYF---LKDRDLKTKK 55 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPR-LAM 117 L +I +D V + E E+LLLE+N I Y+P+YN+LLR+ ++P+I ++ + HPR L Sbjct: 56 LANEICDVDYVVVNNENESLLLENNLIAKYKPKYNMLLRESNAFPYILVTKEEHPRILYS 115 Query: 118 HRGAKHAKGEYFGPFPNGYAVR-ETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 H K KG Y+GPF N + E + +IFP+R+C + ++ C+ Y IG+CLG Sbjct: 116 HDSTKKIKGTYYGPFANSNIKKYELYNFINRIFPLRKCN----KLPNKKCIYYDIGQCLG 171 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PC++ V+ ++Y ++ + F SGK + QL + A++ L FE++ + + + + Sbjct: 172 PCIKK-VTRQDYEPYLKEINDFFSGKSKSIDEQLEKKEIQAAEKLMFEDSQKYLELRKNL 230 Query: 237 RRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 + +E+Q + + +D D+IG + + + G +L Y +EL E+ Sbjct: 231 KMFSERQDIIFSQKNDEDIIGFYCKENVISIVIFKYVNGSLLS--KYDLITVFYSELDEI 288 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + T + ++Y + + LP + L +LSD+ L +LSE KI +G + + Sbjct: 289 LLTLIYEYYSKIAI--ELPKTVYL--SLSDEKL--KTLSE--SLKIKFLNPSKGVKKDVM 340 Query: 356 KLARTNAATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVAS 411 A NA + +K +S Q+ L L +L + ++ RME FD S+ V + Sbjct: 341 DTAFNNAVEIMKNKYLQLISNQNRELNSLEELQKLLDIKDLYRMEIFDNSNIFNTNKVGA 400 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY-GKAIDDSKIPDVILIDGGKG 470 VV++ + EYR++NI DY M +V+ RRY +IP++I++DGGK Sbjct: 401 MVVYENGVKNKNEYRKFNIKDEDANSDYDYMKEVIYRRYKNNTASFGEIPNLIIVDGGKP 460 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 Q+ A L++ D P ++G+AK K + + L S + Sbjct: 461 QVKAALESLKFLEL--DSIIP-VIGLAKDDKHKTD---RIVKWDFSEIKLDKKSDLYFFL 514 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 +I+DE H AI +R K++K +SL I+ +G R + LL+ L ++ ASVEE+ Sbjct: 515 LNIQDEVHRFAISFYRNKKSKSLFENSLYKIKNLGKTRIEKLLEKYETLDKIKEASVEEL 574 Query: 591 AKVPGI 596 +++ I Sbjct: 575 SQIVPI 580 >UniRef50_D1AXF7 Excinuclease ABC, C subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXF7_STRM9 Length = 588 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 179/594 (30%), Positives = 310/594 (52%), Gaps = 32/594 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 +K + + PGVY M D VIYVGKAK+LK R+SSYF + +S KT L+ I+ I+ + Sbjct: 4 IKNIPTNPGVYMMKDINDKVIYVGKAKNLKNRVSSYFNNPKSSMKTFELIKHIKDIEFFL 63 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH----AKG 126 ++E EAL+LE+N IK Y P+YN+LL+D+K+YP++ ++ + P++++ R KH + Sbjct: 64 CNSELEALILENNLIKKYLPKYNILLKDNKTYPYLKITTEKIPQISVVRSRKHLEESTEA 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-PCLQY-QIGRCLGPCVEGLVS 184 YFGP+P + ++E + LL F ++ +Y + L+Y + + L E + Sbjct: 124 YYFGPYP--FNMKEMIKLLLSAFDMQYFNIDMYNKKIIGNNLRYNNLNKEL--YFENVED 179 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E +Y + + + FL KD ++ +L ++M S+NL++E+A +R++I+ + + + Q Sbjct: 180 ENKYIENSKAMINFLKNKDVSIIDKLHNQMIEYSENLDYEKALIMRNRIEKLNALIKTQL 239 Query: 245 VSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + ++ D DV + + +L IR GK++G + ++ E ++ E + Sbjct: 240 IEHSQQVDEDVFVLTNIGNNIFMCILNIRDGKIIGKNNI--RIDNKYEEQDIFEDLFLSY 297 Query: 304 YLQGSQMRTLPGEILLDFNL-SDKTLLADSLSELAGRKINVQTK-PRGDRARYLKLARTN 361 Y + +P I+++ S+ +L S + + + + R L+L + N Sbjct: 298 Y----DNKKIPKNIIIENKYKSNIDILEKYFSTEKNKLVKIHAPIIKSRRLSLLELGKKN 353 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGP 420 L + + + + L L +VL L ++ K +ECFDIS+ G+ V++ V Sbjct: 354 LNYYLDEYMRTEKAISKGLIDLKNVLNLKKLPKIIECFDISNIQGKDAVSAMSVTVNGKA 413 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 YR + IT DD+ M + L RRY K ++ ++PDVILIDGGKGQL A +V Sbjct: 414 DNKRYRHFKITVKDTPDDFMMMRETLMRRYSK-LEIDELPDVILIDGGKGQLGVAVDVLK 472 Query: 481 ELDVSWDKNHPL-LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL K L ++ +AK E +F E + + AL ++ RDE H Sbjct: 473 EL----GKFEFLDIISIAKKE------ELIFKAEESVPYRFDKNDEALKILIRTRDEVHR 522 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 I HRK R+K S L+ I G+GPKR++ L+ G ++ + AS +E+ ++ Sbjct: 523 FGITYHRKLRSKRNIKSVLDEIRGIGPKRKKELILKFGSIKNILEASEKELLEI 576 >UniRef50_A8ESX8 UvrABC system protein C n=26 Tax=Epsilonproteobacteria RepID=UVRC_ARCB4 Length = 616 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 187/613 (30%), Positives = 328/613 (53%), Gaps = 51/613 (8%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-------SNLASRKTEALVAQI 63 L+ + + GVY+ +D G ++Y+GKAK LK R+ SYF+ ++ S + +++++ Sbjct: 7 LQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIYKMISEV 66 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAK 122 + + V E +AL+LE++ IK +P+YN+LLRDDK+YP+IF+ D PRL + R + Sbjct: 67 ESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQ 126 Query: 123 HAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 +K +YFGP+ G R+ L + +I P+ Q ++ V + CL YQI +CL PC E Sbjct: 127 KSKSIKYFGPYSTG--ARDMLDSIYEIVPLVQKKSCV--KGKKACLFYQIQKCLAPC-EN 181 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S+EEYA+ VE ++ K +++++L +M S + FEEA +RD+I+ + + Sbjct: 182 KISKEEYAKIVENALEYIYNK-TKLISKLNEKMLQYSNDFRFEEAMTLRDRIKTIEKSQI 240 Query: 242 KQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE-----LSEV 295 K + T +D+D+ + + A + +F+R GK+ S F K+ E E Sbjct: 241 KSDIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEA 300 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR-Y 354 E + +Y +++ LP EIL+ L L + L +KI + P+ D+ R Sbjct: 301 YERAIINYY--DNEIPLLPKEILIAHELEITNELEEFLHTRFNKKIKL-INPKKDKKREI 357 Query: 355 LKLARTNAATALTSKLSQ-QSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 + +A N L + S+ Q+++++ L L ++ LP + +E FD SH MG+ TV + + Sbjct: 358 VNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYL--IESFDNSHMMGQATVGAMI 415 Query: 414 VFDA--NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQ 471 V++ N + +R YN+ D+Y+ M ++L RR ++ + + PD+ +IDGG+ Sbjct: 416 VWNESLNTFDKKAFRHYNLES---KDEYSQMKEMLIRRI-ESFEKNPAPDLWIIDGGETL 471 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAK-GADRKA------GLETLFFEP---EGEGFSLP 521 L A ++ + V+ D ++ +AK D KA + + ++ E + F+L Sbjct: 472 LKLAFDIVQSVGVNLD-----IIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLL 526 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRK-KRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 L +Q RDE+H AI H+K KRA+ K S L+ I+G+G + + LL Y G + Sbjct: 527 TSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQISLLQ-IKGIGEAKIKKLLLYFGEFE 585 Query: 581 GLRNASVEEIAKV 593 ++ AS +E+ V Sbjct: 586 KIKKASFDELKTV 598 >UniRef50_B1AJ20 UvrABC system protein C n=15 Tax=Ureaplasma RepID=UVRC_UREP2 Length = 584 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 180/597 (30%), Positives = 292/597 (48%), Gaps = 39/597 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+D K LK + +PG Y D +IY+GKAKDL R SYF KT LV Sbjct: 1 MNDLLKNK--LKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLV 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 I ++ V + EAL+LE+N IK + P+YN+LL+D +YP+I ++ + +PRL R Sbjct: 58 NNINDLEYIVVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITNEQYPRLKYVRT 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 KG YFGP + + LL IFP +C + Y + C+ Y + +C+ Sbjct: 118 YDKNKGIYFGPLADSTNKYQLFNLLNSIFPFNKCNHQPY----KKCIYYDLHQCINQ--- 170 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V + Y + + V+ G D +L L ++ + A L+FE A + +Q +A+ + Sbjct: 171 --VQQSTYQEAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSII 228 Query: 241 EKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 V + + D+IG + + +GK+L ++S E++E++ +F Sbjct: 229 NSGLVQLDNNESFDIIGFYEKNNYLVIIIFNYVKGKLL-NKSADTFAIYDYEINELITSF 287 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+Y Q + +I++ L D LLA S + IN QTK R LKLA Sbjct: 288 LMQYYSQNK----ISSKIIVS--LDDDNLLALS-QRFHTKFINAQTKF---HKRILKLAL 337 Query: 360 TNAATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA S +++Q+ + L L +LKLP++ +ECFD S+ +A +V+ Sbjct: 338 DNAILYFESNIKNVINKQNELDDALNQLKQILKLPDLNIIECFDNSNINLSLPIAGMIVY 397 Query: 416 DANGPLRAEY-RRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLA 473 NG L + R+YN+ DY M +V+ RRY + + K+P++I++DGGK Q+ Sbjct: 398 -QNGKLNNKLNRKYNLMTTKNASDYHFMIEVITRRYQRLVSQHQKLPNLIVVDGGKLQVN 456 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A A+L + N P L+G+ K K L G+ L S + ++ Sbjct: 457 AALYALAQLQI----NIP-LIGLKKDQKHKTDAIVL---TNGDEIVLDRKSILYKFLANM 508 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 +++ H++AI R K K S L+ ++G+G KR LLKY + L++AS +E+ Sbjct: 509 QNDVHNYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQEL 565 >UniRef50_A9A4M1 Excinuclease ABC, C subunit n=2 Tax=Thaumarchaeota RepID=A9A4M1_NITMS Length = 528 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 172/548 (31%), Positives = 277/548 (50%), Gaps = 44/548 (8%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 T+ + PG+Y M D+ GT+IY+GKAK+LKKR+ SYF N + KT+ LV I I+ +T Sbjct: 9 TIPTDPGIYLMKDSDGTIIYIGKAKNLKKRVKSYFLKN-QNYKTQKLVQNISDIEFVLTD 67 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR----GAKHAKGEY 128 E+EA LLE N IK Y+PR+N+ L+D + Y ++ +S + +PRL + R G KG+ Sbjct: 68 NESEAFLLESNMIKKYRPRFNIELKDQQRYTYLRISDEKYPRLLVARRTRDGKFLGKGKT 127 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF G + T+ L+K F IR C+ + CL+Y +G C GPC E +++ Y Sbjct: 128 FGPFTQGSSKLLTIGALRKAFQIRICKTLP----KKVCLEYHLGNCEGPC-EFNDAQDRY 182 Query: 189 AQQVEYVRLFLSGKDD-QVLT-QLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ--- 243 + V + L GK+ ++ T +L M A++ +FE A IRD + + + KQ Sbjct: 183 PKHVAALEEVLKGKNQTKIFTKKLEEEMHQAAELQQFERAKDIRDTLIRLGSLQTKQKME 242 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 +V N+ D + G+ A V + G + S +F + G S F+ Q+ Sbjct: 243 YVENS--DEEYFGIGIQEQSATVMNFRMINGVIRDSDKFFFDLVGDNSFS----NFLYQY 296 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y +P I++ ++ LL LSE AG + + T +G + + L N Sbjct: 297 Y----STHKIPKYIIVSELPENQKLLESLLSEQAGFSVKISTPTKGKKKDIMNLILKNI- 351 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLR 422 KL L L +L LP + +ECFDIS+ + V S F P + Sbjct: 352 -----KLIHSKGGEPGLVELKDILHLPVIPNVIECFDISNHGEDFAVGSMAQFVNGKPNK 406 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAE 481 + YR++ I ++ DD+A + +V++RRY + + ++S++PD+I+IDGGKGQL A Sbjct: 407 SGYRKFKIKTVSGRDDFAMIGEVIKRRYYRLLEENSELPDLIVIDGGKGQLNAATKSLQS 466 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L + + +AK E ++ ++ + P+L ++QH RDE+H Sbjct: 467 LGLKLP-----CISLAKEN------EEIYLPKTKNPVTIAKNKPSLQILQHARDETHRFG 515 Query: 542 IGGHRKKR 549 + +R R Sbjct: 516 VAYNRTIR 523 >UniRef50_B8DRE6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRE6_DESVM Length = 762 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 136/322 (42%), Positives = 192/322 (59%), Gaps = 12/322 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA------SRKTEALVA 61 K + + PGVY DA G ++YVGKAK L+KR++SYFR + KT A++ Sbjct: 3 KPVMSNIPDTPGVYLYKDAAGRILYVGKAKHLRKRIASYFREAAEGAPPPQTPKTLAMLR 62 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRG 120 Q +++D T TE EALLLE + IK ++PRYN++LRDDK Y L +PRL + R Sbjct: 63 QAERLDTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLQKKHPYPRLDIVRA 122 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + +Y+GPF + A R T + + FP+R+C + NR RPCL + IG+CL PCV Sbjct: 123 VRRDGAQYYGPFTSAGAARATWKAIHRAFPLRRCTDRALENRVRPCLYHFIGQCLAPCVF 182 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V EEYA V+ V + LSG+ +++ QL + METAS+ LEFE AA +RDQI+AV R Sbjct: 183 D-VPREEYAALVQRVEMLLSGRSGELVGQLRTEMETASEALEFERAAALRDQIRAVERTV 241 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q V G DLDV+G+ G + VLF+RQG VL R++ G E E++ +F Sbjct: 242 ERQAAVLPGGGDLDVVGIVDTGGGLGLGVLFVRQGAVLDGRAFLWPGLGFEEAPELLLSF 301 Query: 300 VGQFYLQGSQMRTLPGEILLDF 321 +GQFY S +P I++ + Sbjct: 302 LGQFYGPHS---AIPSRIVVPW 320 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 148/362 (40%), Gaps = 79/362 (21%) Query: 313 LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQ 372 +P + D +L + ++L++L G + + + R + +A NA + ++ Sbjct: 409 IPPQAATDMSLR---AIEETLADLRGGPVRIVAPRSPEENRLVDMAAANA-----REHAR 460 Query: 373 QSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVF---------------- 415 + T LA L L V+R+E DISHT G T A VVF Sbjct: 461 RETEAPLPDLLARALHLSAPVRRVEAVDISHTGGRSTRAGMVVFEDGRPVRDAWRAYALD 520 Query: 416 ----------DANGP-----------------------------LRAEYRRYNITGITPG 436 D N P AE+ T T G Sbjct: 521 RPADGSADLPDTNAPNGLSDGPPDGVFADLPEGEMAGHAGEVSETSAEHTSQPPT-FTAG 579 Query: 437 DDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGV 496 DDYAA+ RRR D++LIDGG+GQL+ E + + L + Sbjct: 580 DDYAALAGWARRRIASG---PPWADLVLIDGGRGQLSAVHRAVRE---AGGEGLFALASI 633 Query: 497 AKG------ADRKAG--LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 AK ADR+AG + +F L +P L +QH+RD HD AIG HR+ Sbjct: 634 AKARTEDGRADRRAGNVADRIFLPGRTNPLPLRDGAPELLFLQHVRDAVHDFAIGRHRRA 693 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 RA T L+ +EGVGPK ++L G L +R AS +E+A+VPGI A +I L Sbjct: 694 RAGAALTGELQRVEGVGPKTARLLWDRFGTLAAMRAASEKELAEVPGIGPRRARQIHQRL 753 Query: 609 KH 610 K Sbjct: 754 KE 755 >UniRef50_C0QPW8 Excinuclease ABC subunit C n=5 Tax=Aquificales RepID=C0QPW8_PERMH Length = 580 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 176/603 (29%), Positives = 297/603 (49%), Gaps = 44/603 (7%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D K + PGVY G IY+GKAK++K RL + K + + + + Sbjct: 12 DLKNLIDEAPQSPGVYLFKGKKGEYIYIGKAKNIKNRLKGHLNQYRIDPKEKKIFDESSK 71 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I+ +T ++ EA +LE+ IK Y+P+YNV L+ YP + ++ D +P + + R + Sbjct: 72 IEWIITKSDYEAFVLENELIKQYKPKYNVRLKSGSGYPMLVITDDEYPTVVISRKFGEIE 131 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GEYFGPF R L+ K+F +R C+ R C Y +G C PCV +S+ Sbjct: 132 GEYFGPFLPARTARAMKDLIHKLFRLRTCDP--LPKRDIVCFDYHLGLCSAPCVNK-ISK 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 ++Y V+ + FLSG + + +L R+E L FE+A+ +RDQI A+ + KQ V Sbjct: 189 KDYNFDVKAAKAFLSGDVKKFIYRLYDRLEEYKNKLNFEKASVVRDQILAMENLISKQEV 248 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 G ++ + + +G V+++ +R +++G + + G + E+ + + +Y+ Sbjct: 249 --LGLPVNEADIFYFSGKD-VYLIVVRGSRIVG-KEFIQIKQEGIQDFEI--SVISNYYI 302 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKI----NVQTKPRGDRARYLKLARTN 361 +G+ +P ++ + SD L LSE G + ++ + +G N Sbjct: 303 RGN---FIPEVVISNRKFSDHKNLKRWLSEKKGSDVRLLFDIPDEIKG-------FIDRN 352 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 + S L + + +R LPE R+E FDIS G+ TV S VV++ Sbjct: 353 IGSVDLSDLKE---IFKRTFG----FDLPE--RIEGFDISTLFGDFTVGSAVVWENGKMN 403 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAE 481 + EYRR+ I + DDYA++ ++L RR+ K + P ++LIDGGKG L Q + V Sbjct: 404 KREYRRFKIKTVDGIDDYASLRELLFRRFRKYKEMDNPPRLVLIDGGKGHLKQGEIVRDA 463 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L + + + +AK E + + +G+ L P L + IRDE+H A Sbjct: 464 LGIK----NLRIFSLAKK-------EEILYTDDGKSVYLYNYQPLLKLFTTIRDEAHRFA 512 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 + +RK R + L+ IEGVG KR+++L + + + ASVEE+ K+ GI + +A Sbjct: 513 LSYNRKLRERDTLKELLDKIEGVGKKRKEILYRTYKTVDRIAQASVEELKKL-GIPEKVA 571 Query: 602 EKI 604 + I Sbjct: 572 QNI 574 >UniRef50_Q7VK73 UvrABC system protein C n=2 Tax=Helicobacter RepID=UVRC_HELHP Length = 621 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 188/637 (29%), Positives = 312/637 (48%), Gaps = 75/637 (11%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF---------RSNLA 52 S ++ L + +Q G+Y+ +D T++YVGKAK+LK R+ SY ++NL+ Sbjct: 6 STSYNLLVHLADLPTQSGIYQFFDNEDTLLYVGKAKNLKNRIKSYLSIENKHIVPKNNLS 65 Query: 53 SRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT- 111 R +V+QI +I +T+ E +AL+LE++ IK +P+YN+LLRDDK+YP+I++ Sbjct: 66 PR-IALMVSQITRIHTLLTNNEQDALILENSLIKSLKPKYNILLRDDKTYPYIYIDKSLP 124 Query: 112 HPRLAMHRGA-KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQ 170 +PR + R K + +YFGPF +G RE L L P+ Q ++ V + C+ +Q Sbjct: 125 YPRFELTRQVLKSNQIQYFGPFVSG--ARELLDSLYDNLPLVQKKSCV--KGKKACIFHQ 180 Query: 171 IGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIR 230 I +C PC E VS + YAQ + + K +L L S+M T S NL+FEEAA +R Sbjct: 181 IHKCPAPC-ENKVSIQTYAQTIAQGIALIEDK-KALLKILESKMHTLSHNLQFEEAAIMR 238 Query: 231 DQIQAVRRVTEKQFVSNTGDDLDVIGV-----------AFDAGMACVH-----VLFIRQG 274 D+IQ + ++ + + D DV + + +H +LFIR G Sbjct: 239 DRIQKITQMKNQSIIDMMSGDYDVFVLQEQDCGKNSQDSHKKSHTALHTHILMMLFIRNG 298 Query: 275 KVLGSRSYFPKVPGGTELSEVVETF-VGQFYLQG------SQMRTLPGEILL-DFNLSDK 326 +++ S L + +++ + Q Y Q +Q+ LP EIL+ F+ D Sbjct: 299 RIISSDFIL--------LHDDIQSHNLPQLYTQALLNHYKTQIPLLPQEILIPPFDFPDL 350 Query: 327 TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASV 386 L L E + + RG + L+LA N A + +QQ+ L ++ + Sbjct: 351 LHLQQLLREQTRSSLKIVQPQRGAKKDLLQLAHKN-ALEIRRLHTQQNNTFSTLVSIKEL 409 Query: 387 LKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQV 445 L ++ +E FD SH G V +V++ + +R++YRRY + D+Y+ M+++ Sbjct: 410 CVLSQIPYSIEVFDTSHHSGTHNVGGMIVYENDDFIRSKYRRYELHT---SDEYSQMHEM 466 Query: 446 LRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK-----GA 500 L RR ++ D + P + L+DGG+ Q+ A ++ + + + +L +AK A Sbjct: 467 LLRR-AQSFDSNPPPALWLLDGGRAQINLALDILKSVGANVE-----VLAIAKMKHNAKA 520 Query: 501 DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET 560 R G + F L P+ L +Q +RDE H +AI HR K+ K ++ Sbjct: 521 YRAKGNAFDILRSKNAEFKLKPNDKRLQFLQKLRDEVHRYAITYHRYKKQK-----DIQK 575 Query: 561 IEGVGPKRRQM----LLKYMGGLQGLRNASVEEIAKV 593 + +G Q LL Y G + L+ AS E+I V Sbjct: 576 AQMMGKNYTQAQIKKLLDYFGSFESLKTASQEQINSV 612 >UniRef50_Q7NBC4 UvrABC system protein C n=1 Tax=Mycoplasma gallisepticum RepID=UVRC_MYCGA Length = 592 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 173/601 (28%), Positives = 295/601 (49%), Gaps = 33/601 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F+ K L +PG Y + +IY+GKAK++ KR+ YF KT LV +I Sbjct: 3 FNLKQKLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIF 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 ++ + E EALLLE N IK ++PRYN+LL+D+ YP+I ++ + +PRL R Sbjct: 62 YVEFIEVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILMTKEKYPRLIYTRNFDPK 121 Query: 125 KGEYFGPFPNG-YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 KG+++GPF + + LL K+FP++ C N + R C Y + C+ C V Sbjct: 122 KGKHYGPFASSEMKAYDLYNLLLKLFPLKNCFNK----KGRKCEFYDLNLCMKACTHE-V 176 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 SE +Y + + F DQVL L + AS+ +FE+A + D +A+ + +KQ Sbjct: 177 SEADYEVMKKKIDYFFHNGADQVLKDLKEKESIASEKFDFEQAKKYLDLQKAINLIFDKQ 236 Query: 244 FVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 ++ + + +DV+ + C+ VLF L S++ G E EV+ +++ Sbjct: 237 IINLYSAKERIDVLAYQIKENVICI-VLFSYVSSQLVSKNTICDFYYGEE-QEVITSYLS 294 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y + + L + + ++ TLL DSL I + G + LA N Sbjct: 295 QYYKDNIKPKILYASL----DQANATLLKDSLG------IEIINPTSGKMNEIMSLALQN 344 Query: 362 AATALTSKLSQQSTVHQR----LTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 L+ K QR L L ++K+ ++ +E +D S+ V++ +VF+ Sbjct: 345 VTNELSQKYDSLVKKEQRINLALDQLKKLIKVDKLNHLEVYDNSNLFNTDKVSAMIVFEN 404 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS--KIPDVILIDGGKGQLAQA 475 N + +YR+Y I DY M +V+ RR +A+ ++ +PD+I++DGGK Q+ A Sbjct: 405 NQFNKKKYRKYKIKDQQALGDYHYMYEVIYRRLYQALKNNFVDLPDLIILDGGKHQVLAA 464 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 K +L + N L+G+AK + F + + SL S + ++++ Sbjct: 465 KKAIVDLQIDKKIN---LIGLAKNNKHQTDKIVTF---DLDEISLDKSSALYFFLANLQE 518 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E H AI RK +AK S L+ I+G+G KR+Q L+++ + ++ AS+ +++V Sbjct: 519 EVHKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQVLP 578 Query: 596 I 596 I Sbjct: 579 I 579 >UniRef50_A7HJI0 UvrABC system protein C n=3 Tax=Thermotogaceae RepID=UVRC_FERNB Length = 563 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 179/588 (30%), Positives = 305/588 (51%), Gaps = 49/588 (8%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 L+ + ++ GVY ++ G IY+GKAK+LKKRL+S+F++ K++ +V + + V Sbjct: 6 ILEKIPNKSGVY-IFKKGEEYIYIGKAKELKKRLTSHFKA--KDGKSKLIVEEADDLQVI 62 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 + E EAL+LE N I Y+P+YN +L+D + YP+I +S D P L + R K +GE++ Sbjct: 63 LLDNEKEALILEANMIYKYKPKYNAMLKDTQVYPYIRISNDEIPYLEIVRNRK-GEGEFY 121 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF N Y R+ +L+K++ R C+ + + + +PC+ Y +G C G C+ S E+Y Sbjct: 122 GPFTNVYFTRQLFEVLRKVYKFRTCKRDITKLK-KPCMDYHLGLCSGVCINE-ESPEDYK 179 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 +++ V+ L GK V++ + +ME ++ L+FE AA+ RD + +V E Q V Sbjct: 180 KKINEVKNVLKGKFSNVISFIKLKMEQHARLLDFENAAKYRDILLNFNKVMESQGVVLP- 238 Query: 250 DDLDVIGVAFDAGMACVHVLF-IRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 + + + G ++F IR G ++ Y E + F+ FY Q + Sbjct: 239 ---ESVNIDLVVGKHKTFLVFKIRSGYLISKLVY--------EYDGHIVDFIELFYTQNT 287 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD-RARYLKLARTNAATALT 367 +P +I+++ +K L +++++ G KI + + D + L A N + Sbjct: 288 S--DIPEKIIVE--KENKEL--KNIAKILGIKI---AQAKDDLELQLLNKAIDNLNYEIG 338 Query: 368 SKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 L+ + + Q + L ++KLP R+E DISH G+ TVAS VVF+ + EYRR Sbjct: 339 LILTNKIILKQ-MKELLGLMKLPN--RIEGIDISHLAGKNTVASLVVFENGEIKKEEYRR 395 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWD 487 Y + I DD+ ++ V+++RY K +PD++ IDGG GQ+ A E+ + Sbjct: 396 YKLGDIL--DDFESIRIVVKKRYTK----HNVPDLLFIDGGIGQVNAAYQSLKEIGKERE 449 Query: 488 KNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 547 + ++G+AK + L GE L D P L ++ IRDE+H A R Sbjct: 450 CD---VIGLAKEEETIVTL-------HGE-IRLAFDHPVLRLLVKIRDETHRVANEFTRN 498 Query: 548 KRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 K S L+ I+ +GPKR++ LL+ ++ + + S EI ++ G Sbjct: 499 LSTKKSLRSILDEIKWIGPKRKKTLLERYTSIEEILSVSRSEIEQLIG 546 >UniRef50_Q72DX8 UvrABC system protein C n=3 Tax=Desulfovibrio vulgaris RepID=UVRC_DESVH Length = 688 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 197/327 (60%), Gaps = 9/327 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 L T+ PGVY D G +IYVGKA+ L++R++SYFR A + KT A++ ID Sbjct: 6 LSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTIDTL 65 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHP--RLAMHRGAKHAKGE 127 T TE EALLLE + IK ++PRYN++LRDDK Y +F G HP RL + R A+ G Sbjct: 66 STTTEKEALLLEASLIKKHRPRYNIVLRDDKQY-VLFRIGAKHPYPRLEIVRKARRDDGR 124 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGPF + A RET + + FP+R+C + + NR R CL + +G+CLGPCV V E Sbjct: 125 YFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNE-VPSET 183 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVS 246 YA +E V L LSG+ +++ L + ME ASQ L+FE AA +RD+I+A+ R E+Q V Sbjct: 184 YAALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAVL 243 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 G DLDV+GV + VLF+RQG +L RS+F G E E++ +F+GQFY Sbjct: 244 PGGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFY-- 301 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSL 333 G Q T+P I++ + + D+L Sbjct: 302 GPQA-TIPPRIVVPWLPDEDGETGDAL 327 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 125/277 (45%), Gaps = 19/277 (6%) Query: 328 LLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVL 387 +L +L+ L G + + R + +A +NA K T Q L A A L Sbjct: 390 MLETALAALRGGIVRIALPRNPAENRLVDMAMSNAREEARRK---ADTPLQDLLARALHL 446 Query: 388 KLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLR 447 P R+E D+SHT G T VVF+ P YR Y GDDY + Sbjct: 447 AGPP-HRIEAVDVSHTGGRNTRVGMVVFEDGKPFPEAYRTYAFED-GDGDDYGTLAAWAG 504 Query: 448 RRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKG------AD 501 RR PD++L+DGG+GQLA F E + + +AK AD Sbjct: 505 RRVESG---PPWPDLLLVDGGRGQLAAVVRAFEECGMG---AAFAVASIAKARTEEGRAD 558 Query: 502 RKAG--LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLE 559 R+AG + +F L +P L +QH+RD HD++IG HR+ RA T L+ Sbjct: 559 RRAGNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQ 618 Query: 560 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +EG+GP + L + LQ + +A VE +A VPG+ Sbjct: 619 RVEGIGPATARALWERFDSLQAMADAGVEGLAAVPGV 655 >UniRef50_C3XEM6 Excinuclease ABC subunit C n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XEM6_9HELI Length = 563 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 181/567 (31%), Positives = 282/567 (49%), Gaps = 45/567 (7%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-----SRKTEALVAQIQQ 65 L+ + ++PG+Y+ YD ++YVGKAK+LKKR+ SYF + S + + +VAQI Sbjct: 9 LQKIPNEPGIYQYYDKDDKLLYVGKAKNLKKRVKSYFTKECSPNPKNSLRIQHMVAQIAH 68 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM-HRGAKH 123 I + E EAL+LE+++IK P+YN+LLRDDK+YP+I ++ D +PR ++ R KH Sbjct: 69 IHTIIVANEHEALILENSFIKSQNPKYNILLRDDKTYPYITINLNDCYPRFSITRRIIKH 128 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC-VEGL 182 YFGP+P G +E L L ++FPI Q + S + + +PCL YQIG+CLG C ++ Sbjct: 129 KDTLYFGPYPKG--AKEILQSLYELFPIVQ-QASCLKGK-KPCLYYQIGKCLGVCSIKDS 184 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 ++ EY ++ + L ++ L S M + ++ FE+A +D I ++ T Sbjct: 185 NTKAEYDSYIQQA-IILMKNTSKMQKVLESSMLSFAEKELFEQAKICKDCIDVLQETT-- 241 Query: 243 QFVSNTGDDL---DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE----- 294 +F + L DV A + LF+R GKV+ + F K P T +E Sbjct: 242 KFCAVDMKKLYNADVYSFVLQGSNAILFKLFVRDGKVVSTHHQFVK-PNMTNDAENPSQK 300 Query: 295 --VVETFVGQFYLQG----SQMRTLPGEILL-DFNLSDKTLLADSLSELAGRKINVQTKP 347 + E + Y Q + TL +I+L D + L DS+ E A + Q Sbjct: 301 ELIREELACEIYTQALLKILKEGTLCDDIILADISTESLQTLKDSIPEFANKLFAPQ--- 357 Query: 348 RGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGE 406 +G++ R LARTNA LT K + + Q L + + L E+ +E FD SH Sbjct: 358 KGEKLRLATLARTNALHILTHKTNLYAKQEQVLQEIKELFSLDHEITSIEVFDTSHHSSS 417 Query: 407 QTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILID 466 V V + + YR YN++G D+Y+ M ++L RR K+ D++ P + L+D Sbjct: 418 FIVGGMVSYVDYDFYKPGYRHYNLSG---KDEYSQMREMLTRR-AKSFDENPAPSLWLLD 473 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK---GADRKAGLETLFFEPEGEGFSLPPD 523 GG Q+ A + L+ S + L + K A R G + F L + Sbjct: 474 GGLAQINLALEI---LESSGARVSVLAIAKEKRDSKAYRAKGHAKDIVRSKHVEFRLQAN 530 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRA 550 P L +Q +RDE+H AI HR K+ Sbjct: 531 DPRLQFLQKLRDEAHRFAITFHRNKKV 557 >UniRef50_A8FMV1 UvrABC system protein C n=22 Tax=Campylobacter RepID=UVRC_CAMJ8 Length = 600 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 190/618 (30%), Positives = 309/618 (50%), Gaps = 54/618 (8%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF--RSNL-----ASRKTEALVAQI 63 LKT+ + GVY+ ++ G ++YVGKAK+LK R+ SYF NL S + + ++ + Sbjct: 10 LKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEET 69 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRG-A 121 ++ T++E +AL+LE+++IK P+YN+LLRDDK+YP+I++ + PR + R Sbjct: 70 VHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLV 129 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQ---CENSVYRNRSRPCLQYQIGRCLGPC 178 K +K +YFGPF G RE L L +P++Q C++ PC+ YQI RCL PC Sbjct: 130 KKSKIKYFGPFFKG--ARELLDALYLYYPLKQKASCKS--------PCIFYQISRCLAPC 179 Query: 179 VEGLVSEEEYAQQV-EYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 + +S E+Y + + E + L+ ++ L +M +QN +EEAA++RDQI ++ Sbjct: 180 -DKRISREKYLEILDEAMHALLNP--SILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIK 236 Query: 238 RVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 + K + +D +V +AF+ M ++ GK++ S + + + Sbjct: 237 DLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDK-- 294 Query: 297 ETFVGQFYLQGSQMRT--LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 Q L+ M L I + D+ LL + LS+ +KI+++ G++ R Sbjct: 295 NEIYKQLILENFSMDIPLLANVIYVYEEFEDRMLLEEILSQRFDKKISIKIPKIGEKRRI 354 Query: 355 LKLARTNAATALTSKLSQQS-TVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 LA NA + + T+ + L + + LP +E FD SH G V + V Sbjct: 355 CDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLP--NDIEIFDNSHLQGVANVGAMV 412 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI--PDVILIDGGKGQ 471 + AN +++YR++++ +DY M +VL RR A+D KI PD+ LIDGGK Sbjct: 413 TYSANSWDKSKYRKFHLKH---KNDYDQMREVLMRR---ALDFDKIPPPDLWLIDGGKAL 466 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKA-----GLETLFFEPEGEGFSLPPDSPA 526 L AK E+ VS N +L + D KA G +GE FSL + Sbjct: 467 LDLAK----EIIVSSGANVDILAISKEKIDAKAHRAKGGARDKIHSLKGE-FSLSINDKK 521 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L +Q +RDE+H AI H+ + K SS G+ Q LL Y G + + A Sbjct: 522 LQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQKLLAYYGNFESIYKAD 581 Query: 587 VEEIAKVPGISQGLAEKI 604 +++A + G + +A+KI Sbjct: 582 FKDLAMLVG--KKVAQKI 597 >UniRef50_Q313T1 UvrABC system protein C n=2 Tax=Desulfovibrio desulfuricans subsp. desulfuricans RepID=UVRC_DESDG Length = 700 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 131/324 (40%), Positives = 192/324 (59%), Gaps = 11/324 (3%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVA 61 DQ D + + + PGVY D G V+YVGKAK L++R++SYFR + KT A++ Sbjct: 2 DQID----ISCIPTTPGVYLYKDPAGKVVYVGKAKHLRRRVASYFRDIQRHTPKTRAMLR 57 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRG 120 ++ T TE EALLLE + IK ++PRYN+LLRDDK Y L+ H PRL + R Sbjct: 58 SAATVETLSTTTEKEALLLEASLIKKHRPRYNILLRDDKQYVLFQLTRKHHWPRLVLTRK 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + YFGPF +G A R+T ++ K+FP+R+C + +RNR RPCL + + +C GPCV Sbjct: 118 VRKDGSAYFGPFTSGQAARQTWKVIHKVFPLRRCSDKAFRNRVRPCLYHFMNQCPGPCVL 177 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V + Y Q V V + L+G+ +++ L + M+ AS LEFEEAA +RDQ+QAV R Sbjct: 178 D-VDRDGYMQMVRKVEMLLAGRSTELIDMLRADMQAASDALEFEEAALLRDQLQAVERTV 236 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q G D+D +G+A G + VLFIR+ +L R++F E EV+ +F Sbjct: 237 ERQAAVLPGVHDMDAVGLAEAGGGLALSVLFIRRSVLLDKRNFFWSGLTLEEGPEVLLSF 296 Query: 300 VGQFYLQGSQMRTLPGEILLDFNL 323 + Q+Y GS +P IL+ +++ Sbjct: 297 LTQYYGPGS---FIPPRILVPWDI 317 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 20/228 (8%) Query: 394 RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG-DDYAAMNQVLRRRYGK 452 R+E D+SHT G T VVF+ P R +YR Y G DD + RR Sbjct: 477 RIEAVDVSHTGGSNTRVGVVVFENGTPARDQYRTYAFADDEAGGDDTGVLALWAVRRVHS 536 Query: 453 AIDDSKIPDVILIDGGKGQLAQ---------AKNVFAELDVSWDKNHPLLLGVAKGADRK 503 PD++L+DGG+GQLA A +FA ++ +N ADR+ Sbjct: 537 G---PPWPDLLLVDGGRGQLAAVMTALESAGAGGLFAVASIAKARNEE-----TGRADRR 588 Query: 504 AG--LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETI 561 AG + +F + SP L +QH+RD HD+AIG HR+ R+ + L+ + Sbjct: 589 AGNLADRIFLPGRSNPVNFKSGSPELLFLQHVRDTVHDYAIGRHRRARSGAALSGELQRM 648 Query: 562 EGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 +G+GP ++L ++ LQ + +A + +A +PGI + A I LK Sbjct: 649 QGIGPATARLLWEHFSSLQEMVDAGEKGLAALPGIGKAKAAVIHEGLK 696 >UniRef50_C1PCU9 Excinuclease ABC C subunit domain protein n=1 Tax=Bacillus coagulans 36D1 RepID=C1PCU9_BACCO Length = 361 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 198/362 (54%), Gaps = 17/362 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + +PG Y M G +IYVGKAK LK R+ SYF + KT LV +I ++ V Sbjct: 9 LSLLPEEPGCYLMKSREGEIIYVGKAKKLKNRVRSYFTGS-HDEKTTQLVGEIFDLEWIV 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T T TEAL+LE N IK Y+P+YN++L+DDKSYPFI ++ + HP+L + R A KG+YFG Sbjct: 68 TATNTEALVLEMNLIKQYRPKYNIMLKDDKSYPFIKITDERHPQLILTREAGRDKGKYFG 127 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PFPN A ET +L +++P+R+C S +RPCL YQ+G C+G C V EEEY + Sbjct: 128 PFPNARAAAETKKVLDRLYPLRRCPES----STRPCLYYQLGLCIGTCARE-VGEEEYKE 182 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNTG 249 Q+ + F G VL + M A++ L+FE+A ++++QI + E Q V N Sbjct: 183 QIRKIVHFFHGGYRAVLKDMKKEMLQAAKKLDFEKAEQLKEQIMQIEVTMEDQNIVLNDP 242 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 D+ G A G CVHV ++R G+++ F + G E F+ FY G Sbjct: 243 VSRDIFGFAVQDGFMCVHVFYMRDGRIIEREVIFRPI-GSKEPKRAFLDFLQHFY--GES 299 Query: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 TLP E+L+ + +E+ VQ K RG + ++LA NA AL K Sbjct: 300 GNTLPKEMLIP------AAVGKEAAEICVSARIVQPK-RGQKKEMVQLATKNARIALEEK 352 Query: 370 LS 371 +S Sbjct: 353 VS 354 >UniRef50_A7BXI2 UvrABC system protein C n=1 Tax=Beggiatoa sp. PS RepID=A7BXI2_9GAMM Length = 277 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 129/247 (52%), Positives = 158/247 (63%), Gaps = 38/247 (15%) Query: 393 KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY-- 450 +R+ECFDISHT GE TVASCVVFD GP +EYRR+NI ITPGDDYAAM Q L RRY Sbjct: 26 QRLECFDISHTQGEATVASCVVFDTEGPRNSEYRRFNIENITPGDDYAAMQQALNRRYQG 85 Query: 451 --------------GKAIDDSK-------IPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 G+ DS +PD++L+DGG GQ+ AK V +L ++ Sbjct: 86 NRWKGTGEREIREIGEQALDSMPQQAQNLLPDILLVDGGIGQVNVAKTVLNKLQLT---- 141 Query: 490 HPLLLGVAKGADRKAGLETLF-------FEPEGEG----FSLPPDSPALHVIQHIRDESH 538 H ++GVAKG RK GLETL F G F+LP DSPALH+IQ IRDE+H Sbjct: 142 HIRIIGVAKGPGRKPGLETLILSEDETCFPASGSSSPVSFTLPKDSPALHLIQQIRDEAH 201 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI GHRK+RAK ++TS LE I+G+G KRRQ LL Y GGLQG+ A VE++A VPGI + Sbjct: 202 RFAIVGHRKRRAKARHTSILEEIDGIGLKRRQRLLSYFGGLQGVSRAGVEDLATVPGIER 261 Query: 599 GLAEKIF 605 LA+KI+ Sbjct: 262 PLAQKIY 268 >UniRef50_C8P3R6 Excinuclease ABC, C subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R6_ERYRH Length = 590 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 181/595 (30%), Positives = 294/595 (49%), Gaps = 50/595 (8%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LK + +PG Y M + G +IYVGKAK LK R+SSYF + KT +V QI + + Sbjct: 10 LKRLPMEPGCYLMKNKNGEIIYVGKAKKLKNRVSSYF-TGAHDHKTTRMVRQIDDFEFII 68 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG-EYF 129 T TE E+L+LE N IK ++P++N++ DDKSYP++ + + P + + R K +K YF Sbjct: 69 TSTEKESLILEINLIKEHRPQFNIIFMDDKSYPYLKIPREGKPEVLVARDRKQSKQFHYF 128 Query: 130 GPFPNGYAVRETLALLQKIFP----IRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GP+P+ A R+ LL P + ++Y +R +Y + Sbjct: 129 GPYPDATAARDMARLLNDSVPTGDTLLPNTLAIYSAFNRTGKRY--------------TP 174 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EE + V L+G +L +M ASQ+L FE A ++++ A+ + +KQ V Sbjct: 175 EELNVWRQNVMSILNGNIKPFKDELERKMLEASQSLNFELAQVYKEKLHALDYIGDKQQV 234 Query: 246 S-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + + D+ A+ G + LF+R G++L RS + L V +F+ QFY Sbjct: 235 QFSLNERFDLFHFAYYQGYIAIVGLFVRGGRLL-ERSMAVEACMEEPLDAFV-SFIAQFY 292 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 +T+ L++ A+ L ++ G ++ V RG + L++ + NA Sbjct: 293 ENQPVPKTIYVPDLVN---------AEELGDVLGAEVKVPL--RGKKKTLLEITQKNAQQ 341 Query: 365 ALTSKLS----QQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANG 419 L + S +Q + L L++ L + + R+E FD SH G V++CVV+D Sbjct: 342 QLDDQFSILRERQQFKDEALRDLSAALGMSSIIHRIEVFDNSHISGAFAVSACVVYDDGE 401 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNV 478 P + +YRRY + DD A+M +VL RRY + + +SK +PD+IL+DGGK QL A V Sbjct: 402 PNKNQYRRYKLH--QGNDDVASMKEVLYRRYFRLMRESKPMPDLILVDGGKPQLNAALEV 459 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 ++L++ L + D + L E +G ++ S + + ++DE H Sbjct: 460 LSDLELD-------LRVCSLVKDDRHRTHALMRE-DGTLITINKTSSLFNFLMQMQDEVH 511 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 I HR R K S L+ + G+G R++ L K G L+ +R AS+E + V Sbjct: 512 RFVITYHRNLRKKAMTRSILDEVSGLGKVRQKELYKKFGSLKNIRAASLETLQTV 566 >UniRef50_B5Y9S9 Excinuclease ABC, C subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9S9_COPPD Length = 595 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 188/613 (30%), Positives = 299/613 (48%), Gaps = 59/613 (9%) Query: 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEA 77 PGVY Y G VIYVGKA DL RL+ Y RS +K +++ ++ + E ++ Sbjct: 14 PGVYLFYGNSGQVIYVGKASDLHNRLADYARSQ-PGQKEHLIMSNASKVSWIIVANERQS 72 Query: 78 LLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR--GAKHAKGEY-FGPF- 132 L LE IK Y P YNVLL+D K Y ++ + +P + + R K G+ FGPF Sbjct: 73 LELEETLIKKYAPPYNVLLKDGKGYSYLRIDLSQEYPAVEIVRIKQRKPKPGQLLFGPFV 132 Query: 133 ----PNGYA-----VRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 P+ ++ + + +++F IR C+ + R R RPC+ Y+IGRC GPC+ G + Sbjct: 133 PLRVPDMPGKVRGDLKNLIQIAEEVFGIRSCKGPLKR-RMRPCVYYEIGRCSGPCI-GKI 190 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S EEY +V+ FL G +V +L M+ ++NL FE AA +RD + V+R+ Q Sbjct: 191 SPEEYKDRVQLFIKFLKGDTKEVENRLTKMMKEEAENLNFERAAELRDLLYTVKRIG-MQ 249 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF---- 299 +N D+I A A V+ +R G + E SEV+E+F Sbjct: 250 REANVDGSADLIAFALKEDQASGFVVSVRDGMITNVFGLKYSSGATIEPSEVMESFFRDY 309 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAG-RKINVQTKPRGDRARYLKLA 358 V ++ QG +L N + +A++L L + V+ P +A L++A Sbjct: 310 VRLYHEQG---------VLAYVNGA----VAETLKPLGSLHGVQVEAVPDHWKA-LLRVA 355 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDA 417 NA + L + + + L + VL+L + R+E FD++ G + V V + Sbjct: 356 EENAESILERDEGTER-IKRGLLRIKEVLRLEHIPTRIEGFDMAQLFGSERVGGKVAYVN 414 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK--IPDVILIDGGKGQLAQA 475 YR Y I G + DD++ M +VL RR + D K +PD++LIDGG+ LA Sbjct: 415 GQFYTPWYRHYRIKG-SYKDDFSFMYEVLIRR----LQDEKTGLPDLMLIDGGRQHLAVV 469 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + +L V+ + +AK DR LF + + LPP+ V+Q IR+ Sbjct: 470 EKAMEQLGVTVPA-----VAIAKPDDR------LFVSWKEDPIYLPPEDVGKQVLQTIRN 518 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H HRK R + L + G+G RR+ L++ GG+ GL+ AS+EE+ G Sbjct: 519 EAHRWVNSYHRKLREDFGDI--LLGVPGIGKARRRKLIETFGGMVGLQAASIEELTVKGG 576 Query: 596 ISQGLAEKIFWSL 608 + +A++++ +L Sbjct: 577 LPPKVAQQLYRAL 589 >UniRef50_B4U9X0 UvrABC system protein C n=3 Tax=Aquificaceae RepID=UVRC_HYDS0 Length = 565 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 177/601 (29%), Positives = 295/601 (49%), Gaps = 46/601 (7%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D A ++ +PGVY ++ IY+GKA ++KKRL + + S+K + ++ Sbjct: 2 DIVALIEKAPEEPGVY-IFKNQKHYIYIGKAINIKKRLLQHLKEREQSKKEANIFNHSKE 60 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ VT E EALLLE + I+ ++P+YNVLL+ YP I L+ D +P + + R K Sbjct: 61 LEWIVTRNEYEALLLEMDLIRTHKPKYNVLLKHGSGYPVILLTDDEYPTVKITRDTSE-K 119 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GE FGPF N + L+ F +R CE R PC+ Y +G C GPC L+S+ Sbjct: 120 GEAFGPFLNINKALKIKKLIHATFRLRTCEEM--PKRPTPCMDYHLGLCSGPCA-NLISK 176 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+YA V+ + FLSG VL L ++E + NL FE+AA +RDQ+ ++ + + Q V Sbjct: 177 EDYAISVKSAKAFLSGNVKDVLPTLYEKIEQYASNLAFEKAAFLRDQVLVLQNIVDGQGV 236 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D++ + V + G + + + IR +++ + + EL E +G +Y+ Sbjct: 237 FLY--DIEEVDVFYLEGYS-LWLFIIRNKRLVAHKEF----RLNKELIINYEEMLGTYYM 289 Query: 306 QGSQMRTLPGEILLDFNLSDK-TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 +P +I+ +F L++ L S + N+ KP LK+ N Sbjct: 290 SN----IVPKKIVANFELTENFRLFIKSKRKDVAFSNNI-PKP------LLKIIEKNVVL 338 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 +K +S ++ A K +ECFDISH G+ TV S VV++ +++ Sbjct: 339 KPDTK-EFESEFYKLFGRKAP-------KLIECFDISHFQGQYTVGSMVVWEDGSLNKSK 390 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAELD 483 YRRY I + DD+A++ +VL RR + + + + PD+ LIDGGKGQL+ V Sbjct: 391 YRRYRIKTVDYIDDFASLKEVLSRRAKRIVSKEDQTPDMWLIDGGKGQLSMGIEV----- 445 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 LL + + K E + + +G + V +RDE+H AI Sbjct: 446 -----KEKFLLNIYICSLAKK--EEIIYTEDGLEIPIKNHQALYRVFGLLRDEAHRFAIT 498 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 +R R+K +L I+GVG +++++ ++ L + E++ K+ GIS+ + E Sbjct: 499 YNRNLRSKEFIKDTLSKIKGVGKVKKEIIYRHFDSLYDFIKSDDEKLKKL-GISKSIKES 557 Query: 604 I 604 + Sbjct: 558 V 558 >UniRef50_C4XSA3 UvrABC system protein C n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSA3_DESMR Length = 691 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 181/298 (60%), Gaps = 8/298 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVTV 70 K PGVY M A G ++YVGKAK+L+ RLSSYFR++ + KT ALVA+++ +DV + Sbjct: 7 KNFPMSPGVYLMKGARGKILYVGKAKNLRSRLSSYFRNDAGLTVKTAALVAKVEGVDVLL 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHAKGEYF 129 T +E EALLLE + IK ++PRYN++L+DDK+Y L + PRLA R + YF Sbjct: 67 TASEKEALLLESSLIKKHRPRYNIVLKDDKNYILFKLDKRSPFPRLAFTRRVERDGAAYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + A R T L + FP+R+C + NR RPCL + IG+CL PCV V EYA Sbjct: 127 GPFTSAAAARATWKELGRAFPLRKCGDRAMANRVRPCLYHSIGQCLAPCVLA-VDPGEYA 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 V V FL+G+ +VL + ME A+++L FE+AA +RD ++A+++ E Q T Sbjct: 186 ALVRRVEAFLTGRSAEVLRAVEHEMEQAAESLAFEKAAGLRDLLRAMKKTVEGQATVLTR 245 Query: 250 -DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT--ELSEVVETFVGQFY 304 D+DV+G+A + VLF+RQG++L +++F PG T E T + QFY Sbjct: 246 LIDIDVVGLAAVPTGVGLCVLFVRQGRLLDRKTFF--FPGVTADEARGAAVTAMLQFY 301 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 129/278 (46%), Gaps = 13/278 (4%) Query: 323 LSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTA 382 ++D LA+ L E G + + + PRG R L LA A ++ + ++ L A Sbjct: 406 VADSLALAEILEERRGGALRLGS-PRGREERKL-LAMAEANAGRAAEEAAKAAERDLLPA 463 Query: 383 LASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIT-GITPGDDYAA 441 LA L + R+E D+SH G+ VVF+ P +++YR Y DDY A Sbjct: 464 LAKAFGLARLSRIEAVDVSHLGGKGVRVGLVVFEEGAPRKSDYRSYGFPEAEGSSDDYLA 523 Query: 442 MNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGAD 501 + +R PD++LIDGGKGQLA + + +AKG D Sbjct: 524 LAAFAAKRAEAG---PPWPDLLLIDGGKGQLAAVERALGQAGAGGAFAL---ASIAKG-D 576 Query: 502 RKAG--LETLFFEP-EGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSL 558 R++ +E + F P L P SP L +Q +RD HD++IG R R K S L Sbjct: 577 RRSQNEMEDVIFVPGRKNPLGLRPGSPELLFLQRVRDTVHDYSIGRQRLARKKTGLRSDL 636 Query: 559 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 + G+GPK ++L + G +R ASVE + + G+ Sbjct: 637 LALPGIGPKTARLLWEAFGSTAAMRAASVEAVRERTGL 674 >UniRef50_D2L1M6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1M6_9DELT Length = 695 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 118/275 (42%), Positives = 168/275 (61%), Gaps = 4/275 (1%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVTV 70 K + PGVY M G ++YVGKAK+L+ RL SYFR + KT ALV +I+ +DV + Sbjct: 7 KNFPTSPGVYLMKGGKGKILYVGKAKNLRARLGSYFRGETGHTVKTAALVGRIEAVDVLL 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRGAKHAKGEYF 129 T +E EALLLE + IK ++PRYNV+L+DDK+Y L + PRLA R + YF Sbjct: 67 TASEKEALLLESSLIKKHRPRYNVVLKDDKNYILFKLDKRSDFPRLAFTRRVERDGATYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + A R T L ++FP+R+C + NR RPCL Y IG+CL PCV V +EY Sbjct: 127 GPFTSAAAARTTWKELGRVFPLRKCGDRTLHNRVRPCLYYFIGQCLAPCVL-PVEPQEYM 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 V V FL+G+ ++L + ME A++ L FE+AA++RD ++A+RR E Q T Sbjct: 186 TLVRRVEAFLTGRSAEILRAVQKEMEEAAERLAFEQAAKLRDLLKAMRRTVEGQATVLTR 245 Query: 250 -DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYF 283 D+DV+ +A + VLF+RQG++L +++F Sbjct: 246 LVDMDVVNMAATEHGVGLCVLFVRQGRLLDRKTFF 280 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 127/272 (46%), Gaps = 13/272 (4%) Query: 329 LADSLSELAGRKINVQTKPRGDRAR-YLKLARTNAATALTSKLSQQSTVHQRLTALASVL 387 LA+ L+E G + + PRG R L++A NA ++ + ++ L +LA Sbjct: 416 LAEILAERRGAGVRL-GPPRGREERQLLEMAAVNARR--AAEEAAKAAEGDILPSLARKF 472 Query: 388 KLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGIT-PGDDYAAMNQVL 446 LP + R+E D+SH G+ VVF+ P +++YR Y + DDY A+ Sbjct: 473 GLPALSRIEAVDVSHLGGKGVRVGMVVFEDGTPQKSDYRAYAFPELEGTSDDYLALATFA 532 Query: 447 RRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG- 505 +R A PD++LIDGGKGQL E V+ L +AKG R Sbjct: 533 AKR---AASGPPWPDLLLIDGGKGQLEAVSRSLTEAGVA---GAFALASIAKGERRSQNE 586 Query: 506 LETLFFEP-EGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGV 564 ++ + + P SL SP L +Q +RD HD +IG R+ R S++ + GV Sbjct: 587 MDDVIYVPGRKNPLSLRSGSPELLFLQRVRDTVHDFSIGRQRRARNTASLQSTVLELPGV 646 Query: 565 GPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 GPK ++L + G + +R A EI G+ Sbjct: 647 GPKTARLLWEAFGSVTAMRAAGAGEIMAKTGL 678 >UniRef50_Q0RH00 DNA excision repair enzyme UvrABC; UvrC subunit n=1 Tax=Frankia alni ACN14a RepID=Q0RH00_FRAAA Length = 802 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/318 (38%), Positives = 180/318 (56%), Gaps = 7/318 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF + +T+ + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFADLHTLHPRTQHM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V +D TV TE EAL LE+ +IK + PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VQAASAVDWTVVSTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V E + + V+ F+SG+ + L +L M+ A+ E+E AAR+RD A Sbjct: 181 APCV-GRVDAETHREIVDDFCDFMSGQTGRYLRRLEQEMQQAASAQEYERAARLRDDAGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DV+ A D A V + ++R G+V G R + ++ Sbjct: 240 LRRAIEKQAVVLPDGTDADVVAFAEDELEAAVAIFYVRAGRVRGQRGWVVDKLDEVTTAD 299 Query: 295 VVETFVGQFYLQGSQMRT 312 +VE F+ Q YL+G+ + T Sbjct: 300 LVEQFLTQEYLEGASLTT 317 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 166/362 (45%), Gaps = 72/362 (19%) Query: 313 LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL----TS 368 +P EIL+ D +A+ L G ++ ++ RGD+ L+ NA AL T Sbjct: 383 IPREILVPALPPDADAVAELLGVARGGRVEIRVPRRGDKRTLLETVERNARQALALHRTK 442 Query: 369 KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 + S + + L L L+LP+ R+EC+D+S+ G VAS VVF+ ++EYRR Sbjct: 443 RASDLTARSRALAELQEALELPDAPLRIECYDVSNIQGTNVVASMVVFEDGLARKSEYRR 502 Query: 428 YNITGITPG------------DDYAAMNQVLRRRY----------GKAID---------- 455 ++I G G DD A+M + + RR+ G+ +D Sbjct: 503 FSIRGGAGGAGREHGRADAGQDDVASMYETIHRRFSRYLAERSRTGELVDIVDSAEDLAA 562 Query: 456 DSKI-----------------------------PDVILIDGGKGQLAQAKNVFAELDVSW 486 D+ + P+++++DGG Q+A A EL + Sbjct: 563 DTGVRDGRGRAVTPGAAQPIDPDTGRPRRFAYPPNLVVVDGGPPQVAAAARALDELGIDT 622 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 L G+AK LE ++ E LP S AL+++Q +RDE+H AI HR Sbjct: 623 GPGGVALCGLAKR------LEEVWLPDSAEPVILPRTSEALYLLQRVRDEAHRFAITYHR 676 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 +KR+ TS+L+ + G+G RR+ LL+ G + +R AS EEIA+VPGI A I Sbjct: 677 QKRSAAMVTSALDDVPGLGETRRKALLRQFGSVAKVRAASAEEIAQVPGIGPRTAAAILT 736 Query: 607 SL 608 +L Sbjct: 737 AL 738 >UniRef50_A8GXA7 Excinuclease ABC subunit C n=2 Tax=Rickettsia bellii RepID=A8GXA7_RICB8 Length = 356 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 200/354 (56%), Gaps = 15/354 (4%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K L V + PG+Y MY++ +IY+GKAK+LKKRL+ Y ++NL R +V Q+ ++ Sbjct: 7 KKLLPLVPTLPGIYLMYNSDKEIIYIGKAKNLKKRLNYYSKNNLRGR-IARMVHQVYLVE 65 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKG 126 VT +E+EA LLE IK +QPR+N+LLR DKS +I L D P L Sbjct: 66 YKVTISESEAFLLETQLIKQHQPRFNILLRRDKSASYIKLRSDHDFPTLVKCYLDNSTGN 125 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 + FGPF +G+ + + LQKIF +R C +S + R RPCL+Y+IG+C PC G +S+E Sbjct: 126 KLFGPFTSGHQIDLIITELQKIFKLRTCSDSDFAFRKRPCLEYEIGKCFAPCT-GNISKE 184 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR----RVTEK 242 +YA+ +E + FLS +++L +L +M+ S + FE+AA IRD+I ++ R+ K Sbjct: 185 DYAELIEQINDFLSSNIEKLLGKLALKMQALSDHSHFEKAALIRDRINLIKLSKLRIG-K 243 Query: 243 QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 Q+ D DVI + D+ + VL R G+ G ++Y P +EV+E+F+GQ Sbjct: 244 QYEGII--DADVIVIRDDSRFQ-IKVLLYRGGQKWGEQNYSPIYNQTNTKAEVLESFIGQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 FY Q R EI+++ + + + SL +L K RG +A+ L+ Sbjct: 301 FY----QTRKPAKEIIINVPIQNSEPIISSLKKLYNIKTKFIVPKRGSKAQILR 350 >UniRef50_D1NSJ5 Excinuclease ABC subunit C n=3 Tax=Actinobacteridae RepID=D1NSJ5_9BIFI Length = 841 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 192/337 (56%), Gaps = 12/337 (3%) Query: 6 DAKAFLKTVTSQ----PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALV 60 D++ + TSQ PGVY+ D G VIYVGKAK+L+ RLS+YF+ + +T+ +V Sbjct: 42 DSRDLFRPKTSQIPAEPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHQLHPRTQTMV 101 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 + ++ TV TE EAL LE+ +IK + PR+NV+ RDDK+YP++ +S G+ R + R Sbjct: 102 LTARSLEWTVVGTELEALTLEYTWIKEFDPRFNVVFRDDKTYPYLAVSVGERIARTWVTR 161 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRCLG 176 K YFGP+ + +R++L L + FP+R C +V++ +RPCL IG+C Sbjct: 162 SRKRRDTRYFGPYAKVWDLRKSLDTLLRTFPVRTCTPAVFKKAQLTNRPCLLASIGKCSA 221 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQ-VLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +S +++ Q V + L+G+ Q + L +M+ ASQ+LEFE+AAR+RDQI Sbjct: 222 PCV-GRISAQDHRQLVSQLVGVLTGRIGQSYIADLTRQMKQASQDLEFEKAARLRDQIGM 280 Query: 236 VRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +R V ++ V D D DV G+A D A VH F+R G + G R++ + ++ Sbjct: 281 LRNVAQQNAVVLDQDVDADVFGIASDELEASVHAFFVRGGSIRGERNWSVERIEDVSDAD 340 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLAD 331 ++ + Q Y Q + + + D+++L D Sbjct: 341 LLADLIVQAYSQIMHEQQTSQSVSIAAASDDQSILTD 377 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 99/355 (27%), Positives = 166/355 (46%), Gaps = 69/355 (19%) Query: 313 LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT-SKLS 371 +P E+L+ + L LS + G ++++ RG + ++ A+ NA+ AL SK+S Sbjct: 478 IPREVLVPLLPTRADELERWLSSMRGSAVSIRVPQRGSKKDLMQRAQDNASQALQRSKMS 537 Query: 372 QQSTVHQRLTAL---ASVLKLPEVK-RMECFDISHTMG-EQTVASCVVFDANGPLRAEYR 426 + S + R A+ A L L E R+EC+DIS+T+G VAS VVF+ ++EYR Sbjct: 538 RISDMAARTEAMNDVAQALGLAEAPLRIECYDISNTVGGAYQVASMVVFEDAMAKKSEYR 597 Query: 427 RYNITGITPG---DDYAAMNQVLRRRY---------GKAIDDSK---------------- 458 R+ I G DD +A+ + L RR+ G++ID+ + Sbjct: 598 RFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDTGESIDNERRVRDQQASQDQNRQSD 657 Query: 459 -------------------------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 P++I++DGG Q+ A + V + + Sbjct: 658 GDDGMQSSDGPSTVQQNTDRRHFAYKPNLIVVDGGYPQVLAAAKALHDCGV----DDVAV 713 Query: 494 LGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 G+AK LE ++ + L S ++++Q +RDESH AI HR+ R K Sbjct: 714 CGLAKR------LEEVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQARRKGA 767 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 S L+ I G+GP ++ LL + G ++ +R AS+E++ V G+ + A+ IF +L Sbjct: 768 LRSVLDDIPGIGPSYQKKLLAHFGSVRAMRQASLEDLEAVKGVGKAKAKSIFDAL 822 >UniRef50_D2RB48 Excinuclease ABC, C subunit n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RB48_GARVA Length = 780 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 185/311 (59%), Gaps = 14/311 (4%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS--NLASRKTEALVAQIQQIDVT 69 + + +QPGVY+ D G VIYVGKAK+L+ RL++YF+ L R T+++V + ++ T Sbjct: 70 RDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPR-TQSMVLTARSLEWT 128 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HRGAKHAKG 126 V TE EAL LE+ +IK + PR+NV+ RDDK+YP++ +S +T PR+ + +R A+HA+ Sbjct: 129 VVSTEFEALTLEYTWIKAFNPRFNVVFRDDKTYPYVAVSLEETFPRVWITRNRSARHAR- 187 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRCLGPCVEGLV 183 YFGP+ + +R +L L K FPIR C +SV+ RPCL IG+C PC+ G + Sbjct: 188 -YFGPYAKVWPLRHSLDSLLKTFPIRTCSSSVFSKAHRTGRPCLFASIGKCSAPCI-GNI 245 Query: 184 SEEEYAQQVEYVRLFLSGK-DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 E+ + VE+V L+G + ++Q+ + M+ AS+ LEFE AA++RD+I + + ++ Sbjct: 246 DPSEHRKMVEHVVGILTGSVGESYISQIKNEMKEASEELEFERAAKLRDEIAVLNTILQQ 305 Query: 243 QFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 V D + DV G D A +HV F+R G + G +++ + S+++ + Sbjct: 306 NAVVFDNDVEADVFGFCGDELEASIHVFFVRAGMIRGEKNWSVERNEHISDSDLIADLLT 365 Query: 302 QFYLQGSQMRT 312 + Y + Q T Sbjct: 366 RVYAEYEQNYT 376 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 99/354 (27%), Positives = 162/354 (45%), Gaps = 67/354 (18%) Query: 313 LPGEILLDFNLSD--KTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS-K 369 +P EI++ +SD K L LS + G +++++ RG++ + A NA+ L K Sbjct: 432 VPREIIVPIKISDERKQELELWLSNIRGSQVSIRVAERGEKRALMDRANDNASQELKRIK 491 Query: 370 LSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTM-GEQTVASCVVFDANGPLRAE 424 S+ +++ R A+ + K + R+EC+DIS+T+ G VAS VVF+ +E Sbjct: 492 SSRINSIDMRTEAMNEIAKALGMSKSPLRIECYDISNTVDGSYQVASMVVFEDGVARPSE 551 Query: 425 YRRYNITGITPG---DDYAAMNQVLRRRY------------------------------- 450 YR + + G DD +A+ + L RR+ Sbjct: 552 YRHFAVRGEHGDGKIDDLSAVYETLLRRFKHKDVYAENRLDASDSSDTSDTSDSSDINIC 611 Query: 451 -----------GKAIDDSK----IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLG 495 G ++ ++ P +I++DGGK Q AK + VS + G Sbjct: 612 DANSISNKHFSGNSLTSARHFAYKPQLIIVDGGKEQAKAAKRAMRDAGVS----DITVCG 667 Query: 496 VAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNT 555 +AK LE ++ E S L+++Q RDESH AI HRK R K Sbjct: 668 LAKK------LEEVWLPDEDYPIIFKRSSEGLYLLQRARDESHRFAISYHRKLRRKGSLH 721 Query: 556 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 S+ + I G+G R+ LL G ++ L+NAS+E++ KVPGI + A+ I+ +L+ Sbjct: 722 STFDAIPGIGAVYRKRLLASFGSIKSLKNASLEDLQKVPGIGENKAKAIYSALR 775 >UniRef50_P47448 UvrABC system protein C n=2 Tax=Mycoplasma RepID=UVRC_MYCGE Length = 597 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 162/603 (26%), Positives = 279/603 (46%), Gaps = 32/603 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LKT +PG Y D+ G V+YVGKA ++ R+ YF+ N KT+ L +QI +D + Sbjct: 9 LKTAPKKPGCYLWKDSNGKVLYVGKASNIFNRVHQYFQKN-NPYKTQLLSSQISDVDFFI 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 E +AL LE I YQPR+N++L+ + Y + +++ P L + R + + FG Sbjct: 68 LKDENDALNLEAKLINQYQPRFNLVLKQNNGYLYFYITKAKKPTLELARKYQIKTTKCFG 127 Query: 131 PFPNG-YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 PF + + +RE LL K+FP+R+C ++ PC +Q+G C+G C++ ++E+Y Sbjct: 128 PFASSKFKLREIHDLLLKLFPLRKCAP---HQKNHPCFYFQMGLCMGQCMQT-DTKEKYQ 183 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRME-TASQNLEFEEAARIRDQIQAVRRVTEKQFVS-- 246 Q + + F + D V+ + E AS N EFE+A + +AV +T+ + Sbjct: 184 QVISNIEQFFN--DPSVVINYLKAAEKKASDNQEFEKAQQFLTLQKAVLELTKTHHTTII 241 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 D IG F + + + +G+ L + T++ E VE+ + F Sbjct: 242 KQKSSHDFIGYVFQNNVLAITIFCYEKGE-LTDKEQAVFTLEQTDIVE-VESAIITFIYH 299 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + LP +I + + ++ L++DSL KI V G+ L+ NA AL Sbjct: 300 HYKTTPLPSKITVSLDETNLKLISDSL------KIGVFKPKNGNEKLILQTVIDNAKHAL 353 Query: 367 TSKLSQQSTVHQRLTA---LASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 +K + ++ + + LA +L + +E D+S V + F+ ++ Sbjct: 354 ATKWLKFTSNYDKTQLHKDLAQLLNTDYIHSLEIIDVSFYDQNHVVGCMLRFEDGKKIKH 413 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIP--DVILIDGGKGQLAQAKNVFAE 481 RRYNI + GD V RR + +P D+++IDGGK Q+ K VF+ Sbjct: 414 LSRRYNINSLKKGDTNHIALLVYRRILSAMQTKANLPFSDLLIIDGGKAQIKSVKQVFSL 473 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 + P+++G+ K + + L + + + +SP H + I+ E A Sbjct: 474 FS---NVKPPIIIGLVKNKNHQTDHIML---SDFQVKKIAINSPLFHYLATIQTEVDGFA 527 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 K + + + L I GVG Q+L L ++ ASV E+++ I + LA Sbjct: 528 KRSAFNKLSNHQLQNPLLQIPGVGKITAQILFDNFQTLNNIKLASVNELSQF--IKKPLA 585 Query: 602 EKI 604 +KI Sbjct: 586 QKI 588 >UniRef50_B8DGB7 UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C) n=18 Tax=Listeria RepID=B8DGB7_LISMH Length = 366 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 200/369 (54%), Gaps = 20/369 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M D+ K L + PG Y D ++Y+GK+K LK R+ SYF S KT LV Sbjct: 1 MDDKLQKK--LTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSKQIG-KTARLV 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 QI+ +++ +T +E EALLLE I+ YQP +N+ L++ SYP+I ++ + +P + + Sbjct: 58 RQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFE 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 K YFGP+P ++ R+T+ L++K+FP+ +C+ RPCL Y +G CLGPC + Sbjct: 118 VKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDGKP----GRPCLYYHLGLCLGPC-Q 172 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + Y +Q+ + FL G V +L M TA++NLEFE AA +RD+I A+ Sbjct: 173 AEIDPAVYKKQIHKISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETI 232 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + G + D+IG V V F+R G + GS+ + ++ L E + F Sbjct: 233 EKQHIIFPGLKNRDIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQIEKS--LQEDLAKF 290 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY + ++ P E+L+ L DK LL + L RK + + +G + + ++LA Sbjct: 291 LNQFYEDPNNIQ--PKELLIAEKL-DKKLLNEPL-----RKACLFPQ-KGGKKKQIELAI 341 Query: 360 TNAATALTS 368 NA +A + Sbjct: 342 ENAKSAYIA 350 >UniRef50_B9P7P3 Predicted protein n=3 Tax=cellular organisms RepID=B9P7P3_POPTR Length = 267 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 117/270 (43%), Positives = 158/270 (58%), Gaps = 22/270 (8%) Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLP----EVKRMECFDISHTMGEQTVASC 412 +A+ NA + L+++ + R AL L L + +ECFDISHT GE T ASC Sbjct: 1 MAQKNADIQMARLLAEEGSQQARTRALVEALDLACENLDELTIECFDISHTAGEATQASC 60 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-------------I 459 VVF + +EYRR+NI GIT GDDYAAM QVL RRY + + + + Sbjct: 61 VVFHHHKMQSSEYRRFNIEGITGGDDYAAMRQVLTRRYSRVAEAQREAGGAELTGKQPQL 120 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++L+DGGKGQ++ A+ VF +L + + ++GV KG RK GLE L F E Sbjct: 121 PDLVLVDGGKGQVSMAREVFEQLGLDVSR----IVGVEKGEGRKVGLEELVFADGREKIY 176 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK-NTSSLETIEGVGPKRRQMLLKYMGG 578 L DS AL ++ IRDE+H AI G R RAKV+ LE I GVGPK+R LL+ GG Sbjct: 177 LGYDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGGKLEEIPGVGPKKRARLLQRFGG 236 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 ++G+ A+VE++ V GIS LAE I+ +L Sbjct: 237 VRGVSEATVEDLCSVDGISAALAEDIYRAL 266 >UniRef50_C2CW30 Excinuclease ABC subunit C n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CW30_GARVA Length = 749 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 105/276 (38%), Positives = 162/276 (58%), Gaps = 8/276 (2%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVTH 72 + +QPGVY+ D G VIYVGKAK L+ RLS+YF+ N +T+++V + ++ TV + Sbjct: 70 IPNQPGVYKWRDEKGKVIYVGKAKSLRNRLSNYFQPLNQLHPRTQSMVLTARSLEWTVVN 129 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGP 131 TE EAL LE+ +IK + PR+NV+ +DDK+YP++ +S D PR+ + R YFGP Sbjct: 130 TELEALTLEYTWIKEFNPRFNVVFKDDKTYPYLAVSVNDDFPRVWITRNRNSKSTRYFGP 189 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 + + +R +L L K FP+R C SV+ RPCL IG+C PC+ V + + Sbjct: 190 YAKVWQLRHSLDSLLKTFPVRTCRQSVFVKAHKTGRPCLLAAIGKCSAPCI-AKVDRKTH 248 Query: 189 AQQVEYVRLFLSGK-DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVS 246 VE + L+G D + L M+ +S NL+FE AA+IRD+I + V ++ V Sbjct: 249 RHNVEQLVGVLTGSIGDSYINDLTREMKESSDNLDFENAAKIRDKINIFKIVMQQNSVVF 308 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY 282 + + DV G + D+ ACVH F+R+G + G +++ Sbjct: 309 DENVEADVFGFSGDSLEACVHAFFVREGLLRGEKNW 344 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 169/325 (52%), Gaps = 39/325 (12%) Query: 313 LPGEILLDFNLSDKTL--LADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL---- 366 +P EI++ F +S L + LS+L G K++++ RGD+ + A NA +L Sbjct: 433 IPREIIIPFEISQNQCENLENWLSKLRGSKVSIKVPERGDKRNLMNQANDNAKQSLMRLK 492 Query: 367 TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTM-GEQTVASCVVFDANGPLRAE 424 +S++S + +A L + E R+EC+DIS+T+ GE VAS VVF+ +E Sbjct: 493 SSRISSLDARSSAMNEVAEALGMSESPLRIECYDISNTVNGEYQVASMVVFEDGIAKPSE 552 Query: 425 YRRYNITGITPG---DDYAAMNQVLRRR------------YGKAIDDSK------IPDVI 463 YRR++I G DD +A+ + + RR YG+ ++ SK P++I Sbjct: 553 YRRFSIKGSDGNGKLDDLSALYETISRRFKHTSSGDVDDDYGENLEKSKYKKFAYTPNLI 612 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 ++DGG+ Q A+ + + + ++ G+AK LE ++ L Sbjct: 613 VVDGGREQARAAQKAMIDCGIK----NIVVCGLAKK------LEEVWLPNNEYPIILKRS 662 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 S L+++Q RDESH AI HR+KR + SSL++I G+G ++ LL G ++ L+ Sbjct: 663 SQGLYLLQRARDESHRFAITYHRQKRRRAMLNSSLDSIPGIGEFYKKRLLSVFGSVKKLK 722 Query: 584 NASVEEIAKVPGISQGLAEKIFWSL 608 +ASV+++ KV GI Q A+ I+ SL Sbjct: 723 DASVDDLQKVSGIGQAKAKSIYESL 747 >UniRef50_A0AGX5 Complete genome n=3 Tax=Listeria RepID=A0AGX5_LISW6 Length = 366 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 191/359 (53%), Gaps = 18/359 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + PG Y D ++Y+GK+K LK R+ SYF S KT LV QI+ +++ + Sbjct: 9 LTLLPESPGCYIYKDENNEILYIGKSKCLKNRVKSYFHSKQIG-KTARLVRQIRDLELII 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T +E EALLLE I+ YQP +N+ L++ SYP+I ++ + +P + + AK YFG Sbjct: 68 TTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFEAKQDGAHYFG 127 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+P Y+ R+T+ L+QK+FP+ +C+ RPCL Y +G CLGPC+ + Y Sbjct: 128 PYPGRYSARQTVDLIQKLFPLCRCDGKP----GRPCLYYHLGLCLGPCLRE-IDPAVYKA 182 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG- 249 Q+ + FL G V ++ + M+ A+ LEFE AA RD++ A+ EKQ + G Sbjct: 183 QIHKISRFLEGDVKPVKKKIQAIMQEATDKLEFERAAEQRDKLHAINETIEKQHIIFPGL 242 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 + D+IG V V F+R G + G + + +V L E + F+ QFY + Sbjct: 243 KNRDIIGCYEQDNYLSVFVFFVRNGAINGRKWHVFQVEKS--LQEDLAHFINQFYEDPNN 300 Query: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 ++ P E+L+ L DK LA+ L RK V + +G + + + LA NA + + Sbjct: 301 IQ--PKELLIAEKL-DKLSLAEPL-----RKACVFPQ-KGGKKKQINLANENAKSTYIA 350 >UniRef50_C9M9X8 Excinuclease ABC, C subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9X8_9BACT Length = 496 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 102/248 (41%), Positives = 152/248 (61%), Gaps = 4/248 (1%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQI 66 + LK + ++PGVY M+D G +IYVGKAK+LK+R+SSYF + A + LVA + I Sbjct: 5 RGLLKKLPNRPGVYLMHDERGKIIYVGKAKNLKRRVSSYFNHKDFAIPRLRKLVATVCDI 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 T ++ EA ++E IK YQP +NV L+ YP+ ++ + PRL + R + KG Sbjct: 65 TTIRTASDAEAYIVESRLIKAYQPFFNVELKMGTRYPWAVVTDEPFPRLVVTR-RRDIKG 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLVSE 185 YFGPF + A+++ L +++K FP+R C+ + R + SRPCL Y IG+C PCV GL + Sbjct: 124 RYFGPFISAGALKDVLHIIEKAFPLRSCKYDLTRTKLSRPCLDYGIGKCDAPCV-GLCTA 182 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EY ++V+ V L LSG+ ++ +L +RME + LEFE A RD I+++ R+T Q Sbjct: 183 REYGERVDDVILLLSGQTADLIARLRARMEECASRLEFEAAGVARDAIRSLWRMTRSQVT 242 Query: 246 SNTGDDLD 253 DDLD Sbjct: 243 GTLSDDLD 250 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 15/251 (5%) Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVV 414 ++ R+ L+ L + S + AL ++ LP V R++ FDISH G +T VV Sbjct: 235 RMTRSQVTGTLSDDLDEDSWTA--MKALQELVGLPTVPWRIDGFDISHHAGYETYGVSVV 292 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLA 473 F+ P + YRR+ I + DD+ ++ + + R+Y A+ ++ +P + +IDGG QLA Sbjct: 293 FEQGYPNPSLYRRFKIRTVDWIDDFRSIEETVTRKYRMALRAEAPLPQLAMIDGGPQQLA 352 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A+ AEL+++ L VA + E ++ P+ LP + PAL ++Q + Sbjct: 353 FARKALAELELN-------LPTVALAEEE----ELIYTAPDAAPIRLPRNDPALRLLQRV 401 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H AI HR+ + S+LE I G+G +LL G ++ + S EE++ V Sbjct: 402 RDEAHRFAITSHRRASTARFSRSALEDIPGIGKHTSALLLSAFGSVRRVAGLSEEELSSV 461 Query: 594 PGISQGLAEKI 604 GI A +I Sbjct: 462 KGIGPVTARRI 472 >UniRef50_B3DRV5 UvrABC system protein C n=18 Tax=Bifidobacterium RepID=UVRC_BIFLD Length = 746 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 106/276 (38%), Positives = 163/276 (59%), Gaps = 8/276 (2%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVTH 72 + ++PGVY+ D G VIYVGKAK+L+ RL++YF+ L +T+ +V + ++ TV Sbjct: 16 IPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEWTVVA 75 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGP 131 TE E+L LE+ +IK + PR+NV RDDK+YP++ +S G+ PR+ + R K YFGP Sbjct: 76 TELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTRYFGP 135 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRCLGPCVEGLVSEEEY 188 + + +R +L L + FP+R C +V+ RPCL IG+C PCV + +E+ Sbjct: 136 YAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCV-NRIEADEH 194 Query: 189 AQQVEYVRLFLSGKDDQ-VLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 + E + ++G+ + + QL M+ AS LEFE+AAR+RDQIQ + V ++ V Sbjct: 195 RRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNAVVF 254 Query: 248 TGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY 282 D D DV G A D A VH ++R G + G R++ Sbjct: 255 DQDVDADVFGFASDELEASVHAFYVRAGSIRGERNW 290 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 10/149 (6%) Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 P+++++DGGK Q+ A + V N + G+AK LE ++ + Sbjct: 605 PNLVVVDGGKPQVMAAAKALEDCGV----NDVAVCGLAKR------LEEVWVPDDDYPII 654 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 L S ++++Q +RDESH AI HR++R K S+L+ I G+G ++ LL + G + Sbjct: 655 LKRQSEGMYLLQRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSV 714 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + +R ASVE+ KV GI AE ++ +L Sbjct: 715 KAMREASVEDFEKVKGIGHAKAEALYTAL 743 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 9/147 (6%) Query: 313 LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT-SKLS 371 +P EI++ + + L L+ L G + ++ RGD+ + + A NA+ AL SK+S Sbjct: 374 VPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSKMS 433 Query: 372 QQSTVHQRLTAL---ASVLKLPEVK-RMECFDISHTMGEQ-TVASCVVFDANGPLRAEYR 426 + S + R A+ A L L E R+EC+DIS+T+G VAS VVF+ ++EYR Sbjct: 434 RISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSEYR 493 Query: 427 RYNITGITPG---DDYAAMNQVLRRRY 450 R+ I G DD +A+ + L RR+ Sbjct: 494 RFAIRGKDGKGAVDDLSALYETLTRRF 520 >UniRef50_Q6KH99 Excinuclease ABC nuclease subunit C n=2 Tax=Bacteria RepID=Q6KH99_MYCMO Length = 565 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 158/605 (26%), Positives = 273/605 (45%), Gaps = 62/605 (10%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L VT++PGVY + G ++YVGKAK+L+ R+ YF L S KT LV I +V V Sbjct: 7 LDNVTTKPGVYLWKNKHGNIVYVGKAKNLRSRMKQYFSGMLNSYKTIKLVQIIDSYEVIV 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFI---FLSGDTHPRLAMHRGAKHAKGE 127 T +E EAL+LE N I+ ++P +N+LL DDK YP+I L D ++ + R K Sbjct: 67 TTSEKEALILERNLIETHKPSFNILLIDDKRYPYIKISLLKNDIEIKM-VRRYKKQNNSF 125 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 Y+GPFP G+ + + LL IR+ +++ G P V S Sbjct: 126 YYGPFPTGFGAKVLINLL-----IRET-------------KFEKGL---PVVNKNAS--Y 162 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 + +Q + V+ L + + + L +M +++N +FE A I+ I + + Q V Sbjct: 163 WKEQFKKVKNILGVNNKEYINDLKKQMFLSAENFQFEIANEIKSTILFLEELKNNQVVEL 222 Query: 248 TGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY-FPKVPGGTELSEVVETFVGQFYL 305 D ++DVIG + D +++LF R G +L S + K+ G E + F+ ++Y Sbjct: 223 KNDKNIDVIGFSEDKNYIFLNMLFYRYGALLSSEDFVLEKLSDG---KETIRKFINEYY- 278 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + LP E+++ + L D + RG L A +A Sbjct: 279 ---TLNLLPDELIISLEFTHNDLNFD---------FEILNPKRGTYKNILDNAIMSANEK 326 Query: 366 LTSKL----SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 K+ ++ + L +L+ + D S+T V+ + + Sbjct: 327 REIKILEFERKKEITINNIEKLEELLETKNLNHFLVIDNSNTNNFSPVSVIISYKNGLKD 386 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAE 481 + Y+++N+ D M + R + K ++ IPD++++DG Q+ + K + A Sbjct: 387 KKNYKKFNLETGDRKADVEYMKEACFRYFSKK--ENPIPDLLIVDGALAQVREVKKILAS 444 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L + ++G+ K D+ + + + E S D+ L ++ I++E A Sbjct: 445 LFIKLK-----VIGLVKN-DKHITSHIINLKEKREEIS---DASLLIFLKSIQEEVDRFA 495 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV--PGISQG 599 HR R K L +I+G+GPK + LL+ + NAS+E++ K+ I++ Sbjct: 496 KFHHRSLRTKNTLEGFLLSIKGIGPKTEKKLLENFKNYSEIYNASLEDLEKILSKSIAKT 555 Query: 600 LAEKI 604 L EKI Sbjct: 556 LYEKI 560 >UniRef50_D1Y7G8 Excinuclease ABC, C subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7G8_9BACT Length = 575 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 149/249 (59%), Gaps = 6/249 (2%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQI 66 +A L+T+ +PGVY M+D G VIYVGKAK LK+R+SSYF + A + LV +Q I Sbjct: 11 RAILRTLPLKPGVYLMHDETGKVIYVGKAKKLKRRVSSYFNHRDFAIPRLRKLVQTVQDI 70 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPR-LAMHRGAKHAK 125 T TE+EA ++E IK QP +NV L+ YPFI ++ + PR L H K Sbjct: 71 SFIRTETESEAFIVESRLIKAIQPFFNVELKMGSRYPFIVVTAEKFPRVLVTHTRPK--T 128 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLVS 184 G FGP+ + A+R L +++ FP R C ++ + + +RPC+ Y IG+CLGPC G + Sbjct: 129 GRVFGPYTSAGAMRSMLNMIKNFFPARNCSMNLEKEKLARPCIMYDIGKCLGPCA-GKCT 187 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E+EY + V+ + + LSG+ ++ +L RME ++ + FEEAA+ RD I+ + + + ++ Sbjct: 188 EKEYGETVDDILMLLSGQTADLVARLRPRMERLAKEMRFEEAAKARDTIRDLWKFSRQKL 247 Query: 245 VSNTGDDLD 253 DDLD Sbjct: 248 SVTLADDLD 256 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 129/252 (51%), Gaps = 15/252 (5%) Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVV 414 K +R + L L + + +T L + LP V R++ FDISH+ G +T VV Sbjct: 241 KFSRQKLSVTLADDLDEDTWFA--MTRLRDLCGLPVVPWRIDGFDISHSAGRETYGVAVV 298 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLA 473 F+ P ++ YRRY I + DD+ +M + + RRY I+ +P +ILIDGG QLA Sbjct: 299 FEQGYPNQSLYRRYAIKTVEGIDDFRSMRETVLRRYRGMIESQLPLPQLILIDGGPEQLA 358 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A+ AE+ P+ + A R E +F EP+ L + PAL ++Q + Sbjct: 359 FARQALAEV--------PVAIRTIALAKRD---ELIFTEPDKPPLRLDWNDPALRLLQRV 407 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDESH AI HR+KR + S+LE + G+G + +LL G +Q + S EE+ K Sbjct: 408 RDESHRFAITTHRRKRVSRLSRSALEDVPGIGKHKAALLLSTFGSVQRIAALSAEELQKA 467 Query: 594 PGISQGLAEKIF 605 PGI A KI Sbjct: 468 PGIGPVQAAKIL 479 >UniRef50_A7BFX2 Excinuclease ABC subunit C (Fragment) n=1 Tax=Pseudomonas syringae pv. tabaci RepID=A7BFX2_PSESZ Length = 274 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 87/176 (49%), Positives = 122/176 (69%), Gaps = 2/176 (1%) Query: 95 LLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQC 154 +RDDKSYP++FLS +PRL++HRG K AKG YFGP+P+ A+RE+L+LLQK F +RQC Sbjct: 94 FVRDDKSYPYVFLSDGNYPRLSIHRGTKKAKGRYFGPYPSAGAIRESLSLLQKTFQVRQC 153 Query: 155 ENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRM 214 E+S ++NR+RPCLQYQI RC GPCV GLV E YA+ V + +FL G+ + + +L + M Sbjct: 154 EDSYFKNRTRPCLQYQIKRCKGPCV-GLVEPEVYAEDVRHSVMFLEGRSNALSDELNASM 212 Query: 215 ETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVL 269 E A+ L+FE AA +RD + V + Q + G D+DV+ + G ACVH++ Sbjct: 213 EKAAMALDFERAAELRDTGRLVATAYQDQQSMDGGTGDVDVVAAFVNPGGACVHLI 268 >UniRef50_Q98R54 EXCINUCLEASE ABC SUBUNIT C n=1 Tax=Mycoplasma pulmonis RepID=Q98R54_MYCPU Length = 563 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 161/609 (26%), Positives = 278/609 (45%), Gaps = 70/609 (11%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L +V +PGVY D +++Y+GKA +L R+ YF+ +L S KT ALV +I ++ + Sbjct: 6 LDSVPKKPGVYFWKDQFNSILYIGKANNLNDRMKQYFKGSLNSYKTHALVEKIANFEIII 65 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDK--SYPFIFLSGDTHPRLAMHRGAKHAKGE- 127 EAL+LE N I+ ++P YN+LL DDK SY IFL+ D R K+++ Sbjct: 66 VQNPKEALILERNLIRKHKPYYNILLSDDKRFSYIKIFLNKDGLEISIARRVYKNSQNTL 125 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 Y+GPFP G+ L LLQ+ ++Y N G +E S Sbjct: 126 YYGPFPTGHGSSIILKLLQR--------EALYEN--------------GIFIENKDS-VF 162 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS- 246 + Q+ E ++ LS K++ L Q+ +M A+QN +FE A ++ + + ++ E Q Sbjct: 163 WKQRFEKIKDILSFKNNLYLNQIKEKMLIAAQNYQFEVANNLKLSHEYLMKLKESQIAEL 222 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 ++DVI + G+ + F + G +L + ++ E S VE F+ +FY Sbjct: 223 KKILNIDVISIIEKNGLLFSTIFFYKYGVLLNKVDHIIEIKISFEAS--VEEFINEFY-- 278 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK----PRGDRARYLKLARTNA 362 + + P ++L DK+ L +L ++N +TK +G + + L N Sbjct: 279 --KNKIAPNLLIL-----DKSFLKFNL------ELNFETKVLYPKKGIYKKLIDLVNENT 325 Query: 363 ATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 T + K L + L L++++ + + R+ D SH ++ V + Sbjct: 326 LTNINEKEKVHLLKIEKTKNNLDKLSNLINVKNLHRIVMMDNSHFANFHPISVVVSYIDG 385 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK--IPDVILIDGGKGQLAQAK 476 EYR++N + D A + + + K I+ +PD+ ++DG QL + K Sbjct: 386 IKNTNEYRKFN---LDVNHDRKADIEYFKEGFLKYINSKSFIVPDLFIVDGSFAQLHEVK 442 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADR-KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + ++++ P++ V R K ++T E L D + + I++ Sbjct: 443 KQMKKANLTF----PIIALVKDDFHRTKKLIDT------NEKEHLLEDKEVKNFLSMIQN 492 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E A H +R K SL I+G+GPK + L+ + + NAS +E+AKV Sbjct: 493 EVDQFAKKHHYNRRDKSSLEGSLLNIKGLGPKMEKKLISHFETYSNIYNASEKELAKV-- 550 Query: 596 ISQGLAEKI 604 I +A+KI Sbjct: 551 IPLNIAKKI 559 >UniRef50_B2S367 UvrABC system protein C n=4 Tax=Treponema RepID=UVRC_TREPS Length = 691 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 165/333 (49%), Gaps = 14/333 (4%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTET 75 S GVY D G VIYVGKAK L+ RL+SYFR KT L+++ ++ T E Sbjct: 20 STSGVYLWKDVHGVVIYVGKAKSLRTRLTSYFRCR-HDPKTRVLMSRAAALEYLQTQHEY 78 Query: 76 EALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNG 135 EALLLE+ IK + PRYN+ L+D K+YP + L+ + PR+ R YFGPFP+ Sbjct: 79 EALLLENTLIKKHTPRYNICLKDGKTYPLLKLTCEPFPRIFRTRQFCQDGARYFGPFPDV 138 Query: 136 YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYV 195 + L L+ + + IR C + R R PCL Y + RC PC G VS Y + + + Sbjct: 139 QILDSFLKLILRTYKIRTC--TTLRKRKNPCLYYHLKRCDAPCC-GWVSPRTYQKDIHEI 195 Query: 196 RLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDL-DV 254 L L G D + +L RM+ A + FE AARIRD IQA+R +T K V + + D Sbjct: 196 TLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLVQDMDERARDY 255 Query: 255 IGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLP 314 I + + VL +R GK+ G + + E E++ F+ +Y T+P Sbjct: 256 IAWSSTGAIVTFAVLRMRGGKLNGRELFRTRSLKNEE--EILSEFLITYYSD----HTIP 309 Query: 315 GEILLDFNLSDKTLLADSLSELAGRKINVQTKP 347 + F S L LS AG + V P Sbjct: 310 PHL---FVHSSAGLAEHWLSHKAGTQCTVTLIP 339 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 124/253 (49%), Gaps = 14/253 (5%) Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRM-ECFDISHTMGEQTVASCV 413 L +A+ NA +T L + L L L L + + E FDISH G+ TVAS + Sbjct: 417 LAMAQLNAHEDITRYLKNRG-ADDALKELQKQLHLARIPTLIEGFDISHLGGKYTVASLI 475 Query: 414 VFDANGPLRAEYRRYNITGI-TPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 F P YR +N+ T DD+A+M + + RRY + +PD+IL+DGG G + Sbjct: 476 CFKNGAPDTKNYRLFNLRAHDTRIDDFASMREAIARRYTHTPEGYTLPDLILVDGGIGHV 535 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + A++V L +S L+G+AK A E LF L +PALH++Q Sbjct: 536 SAAQHVLDALGLSIP-----LVGLAKRA------EELFIPNSPTPLVLDRRNPALHMLQR 584 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H AI +R R K + S E + VG R LL + G + L++A+ ++IA Sbjct: 585 IRDEAHRFAITRNRHLRTKKELVLSFERLPHVGKVRAHRLLAHFGSFRSLQSATPQDIAT 644 Query: 593 VPGISQGLAEKIF 605 I A I Sbjct: 645 AIHIPLTQAHTIL 657 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 168/280 (60%), Gaps = 9/280 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQIDVT 69 L ++ GVY M A V+Y+GK+K+LK R+SSYF N+ S K L +++ID T Sbjct: 225 LNKFPTKSGVYLMKSAKDEVLYIGKSKNLKSRVSSYFNQNIDRSEKVVELTHHVRKIDYT 284 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 +T +E EALLLE IK Y+PR+N LL+ +SYPF+ S P+L + + EYF Sbjct: 285 LTGSELEALLLESKLIKQYKPRFNTLLKRYRSYPFLTFSEHEFPKLEIALDVEDGDKEYF 344 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPFP+ ++ + +L++ F +R+C + + +R+R C+ + + RC PC +E Y Sbjct: 345 GPFPSLELLQHVVEILERYFKVRKCSDHDF-SRARFCIYFDLDRCFAPCKHPKHYKEAYI 403 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMET-ASQNLEFEEAARIRDQIQAVRRVTEKQF-VSN 247 ++++ +R FLSGK+ +++ +I M+ AS+NL FEEAA ++ +I ++++V +Q + N Sbjct: 404 KELDQIRAFLSGKNPEIINVMIREMKALASENL-FEEAADLKQKIHSLQKVFFRQSDIVN 462 Query: 248 TGDDLDVIGVAFDAGMA-CVH---VLFIRQGKVLGSRSYF 283 + ++ +VI + + C +LF+R G+++ + F Sbjct: 463 SVNENNVIAILPSENFSDCCKEYVLLFVRFGRLIDQKKVF 502 >UniRef50_O84899 UvrABC system protein C n=13 Tax=Mycoplasma RepID=UVRC_MYCAP Length = 571 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 156/594 (26%), Positives = 263/594 (44%), Gaps = 58/594 (9%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 LK ++ PGVY DA V+YVGKAK+L+KRL YF + S KT L++ + +V + Sbjct: 10 LKNTSTSPGVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYI 69 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFI---FLSGDTHPRLAMHRGAKHAKGE 127 T EALLLE + + P +N+LL DD+ YP++ L L+ K+ K Sbjct: 70 CKTNKEALLLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNT 129 Query: 128 -YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 Y+GPFP+GY + L LLQ L Y+ G + Sbjct: 130 LYYGPFPSGYGAKPILKLLQ-----------------HEAL-YESGLLIKNNDSSF---- 167 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 + Q ++ LS K++ L +L ++M TA+ N++FE A +RD + ++++ E Q + Sbjct: 168 -WVNQFAKIKEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIE 226 Query: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + ++DV D + VLF R G ++ + +P G + E + F QFY Sbjct: 227 LSQYKNIDVFAYKTDEKLIYATVLFYRYGVLINKVNL--TIPLGISIDESIRVFFEQFYA 284 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + LP ++ + L S + KI K L Sbjct: 285 D----KILPDNFIVQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLI 340 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 + ++L + ++ L++L L LP++K + FD S+ V +V+ ++ Y Sbjct: 341 MQNQLEKADSM---LSSLNKYLNLPKLKNIVIFDNSNINNINPVGVAIVYTNGIKNKSLY 397 Query: 426 RRYNITGIT-PGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 R++N+ ++ D + Q + + + + ++K D+I+ DGG Q+ +AK L + Sbjct: 398 RKFNLEALSYRSADVDYIRQSITKFFS-SDKNTKDFDLIITDGGLQQVNEAKKTLKVLGI 456 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH-VIQHIRDESHDHAIG 543 N P++ V + L L + + LH + I+ E D Sbjct: 457 ----NIPVIGLVKNEYHKTRALIDLNLN------EIYVNDLELHNYLAQIQIEV-DRFAK 505 Query: 544 GHRKKRAKVKNTSSLE----TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 H + R K+ SSLE I+G+G Q LL + + +ASVEE+AK+ Sbjct: 506 SHFRNRQKI---SSLEGKLRNIKGLGHNMEQKLLNHFKSYAKIYDASVEELAKI 556 >UniRef50_Q4A6D1 Excinuclease ABC subunit C n=2 Tax=Mycoplasma synoviae RepID=Q4A6D1_MYCS5 Length = 582 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 151/619 (24%), Positives = 275/619 (44%), Gaps = 78/619 (12%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDV 68 + LK + +PG Y D VIYVGKA +L R++SYF+ N+ S KT A+ I D Sbjct: 9 SLLKNIPKKPGTYLWKDQFDNVIYVGKANNLHNRMNSYFKGNINSFKTYAMFENIYSFDY 68 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGE 127 + + AL+LE YI Y+P+YN++L DDK YP++ + D+ +R +K+++ Sbjct: 69 FIADSPKAALILEKKYIDQYRPKYNIMLLDDKQYPYLNIKIKDSLEIKQTYRVSKNSEFN 128 Query: 128 -YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 Y+GP+P + + + +LQ+IF Q GL+ ++ Sbjct: 129 IYYGPYPQSHLFK-FVKILQRIFLYNQ---------------------------GLLIKD 160 Query: 187 E----YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + + ++ ++ L K++ L +M A+ NL FE A + ++ + + EK Sbjct: 161 KPKMYWIEKFNILKEILKFKNNDFNNLLKEKMIAAADNLNFEAAIEYQKALEFISQFKEK 220 Query: 243 QFVS-NTGDDLDVIGV-AFDAGMACVHVLFIRQGKVLGSRSYFPK--VPGGTELSEVVET 298 Q + + + DV + +A ++L+I G ++ F + + L ++ Sbjct: 221 QIIEISKYKNYDVFSFEEKNESIAIFYMLYI-----YGVQNIFQRKIIENYDSLENIISN 275 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ +FY + + LP I+LD+ D L D S++ + +G +KLA Sbjct: 276 FLKEFY----KNKALPDNIILDYKYKDLNLDLDFKSKIIFPQ-------KGINHDLIKLA 324 Query: 359 RTNAATALTSKLSQQSTVHQR----LTALASVLKLPEVKRMECFDISHTMGEQTVASCVV 414 N + S L+Q+ + Q LAS L L ++ + FD SH + SC+ Sbjct: 325 NENNNSGYESYLNQKIILEQHKLNLWKNLASELFLDKLNSIFIFDNSHFNNSNPIGSCIC 384 Query: 415 F---DANGPLRAEY---RRYNITGITPGDDYA--AMNQVLRRRYGKAIDDSKIPDVILID 466 + + N L A + + I +Y ++ + L+R + D D+ ++D Sbjct: 385 YTKAEKNPHLYASFNHEKEQKELKIKSDIEYMYHSVYKYLKRNHLFITKD----DIFILD 440 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPL-LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 G Q+ A+ + + ++ N + L G+ K + K L + + S Sbjct: 441 GSSMQIKFAQKAILDFNKDFNANLEIKLFGLVKDKNHKTNLMI-----NSKDEIIKISSE 495 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 + + I++E A +K + + S L I+G+ K + LLK+ G + NA Sbjct: 496 SFLFLSKIQEEVDLFAKKRMQKNQINLTFKSRLIQIKGISYKTEEKLLKHFGTFANIYNA 555 Query: 586 SVEEIAKVPGISQGLAEKI 604 S EE+ KV + +A+KI Sbjct: 556 SFEELQKVTN--KSIAQKI 572 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDV 68 L PGVY M DA G V+YVGKA++L++R+ SYF L +RK + L+ + +I+ Sbjct: 285 LLADTPELPGVYLMRDALGRVLYVGKARNLRQRVRSYFSQPLGYTRKMDGLLESVAEIET 344 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGE 127 VT +E EALLLE +++ Y+P YN LR+ ++YP++ + G PRL + R Sbjct: 345 VVTGSELEALLLESQFVQRYKPPYNTQLRNHEAYPYVKVELGRPWPRLMLARQRDDDDAV 404 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS--RPCLQYQIGRCLGPCVEGLVSE 185 Y GPF + A R + LL ++ P+R C S RS RPCLQ +GRC+GPC G V+ Sbjct: 405 YVGPFRSTAAARSVVELLHQLLPLRTCHRSFRDARSYGRPCLQLTLGRCIGPCT-GCVTP 463 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 +EY V+ +LSG+ V+ + + A + L+FE AAR+RD ++ Sbjct: 464 DEYRALVDCALRYLSGETSVVVERAQQLLADAVERLDFERAARLRDLLR 512 >UniRef50_B1H0C4 Excinuclease ABC subunit C n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0C4_UNCTG Length = 432 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 151/258 (58%), Gaps = 11/258 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+D + K L+ + PGVY M D G++IY+GKAK LK R+SSYF +++ S K +++ Sbjct: 1 MTDHKNKK--LENIPKLPGVYIMRDGVGSIIYIGKAKSLKNRVSSYFNADINS-KAASII 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHR 119 +++ID + +E EAL++E I QP +N + +DDKSYP+I S D PRLA+ R Sbjct: 58 TAMRKIDYILCTSEREALIIERQLINKVQPYFNSMWKDDKSYPYIKFSIDEDFPRLALTR 117 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQC------ENSVYRNRSRPCLQYQIGR 173 YFGP+P + +++ + L K+F IR C E+ + + CL Y Sbjct: 118 KKLKDGALYFGPYPQVFYIKKFVRWLVKLFKIRPCKMDLSEESLPEEKKVKSCLYYHTEM 177 Query: 174 CLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQI 233 C GPC+ G + ++Y ++++ + LFL+GK ++ ++M S+N+ +EEA IRD++ Sbjct: 178 CTGPCL-GKIMSKDYKKKIKDIELFLNGKFKKLEDDWKTQMFDLSENMRYEEAKEIRDRL 236 Query: 234 QAVRRVTEKQFVSNTGDD 251 A++ ++E+ +S D Sbjct: 237 YALQNMSERVIISEITQD 254 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 17/176 (9%) Query: 380 LTALASVLKL---PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG 436 + L +VL+L P V +E FD S+ G VAS V F + YRR+ I + Sbjct: 266 INELKNVLRLKHQPAV--IEGFDNSNIQGTNAVASMVRFQNGIADKKNYRRFKIKTVAGA 323 Query: 437 DDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLG 495 DD+A+M +V+ RRY I + K+PD+ILIDGGKGQL A + EL ++ ++ Sbjct: 324 DDFASMKEVVFRRYSSLIRKNEKLPDLILIDGGKGQLGAAVSALEEL-----QSQIPIIS 378 Query: 496 VAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAK 551 +AK E +F + L S AL ++Q +RDE+H A+ HRK RAK Sbjct: 379 LAKKN------EEIFLPSKDSAMLLSRHSAALRLLQSVRDEAHRFAVSYHRKLRAK 428 >UniRef50_D1B5F2 Excinuclease ABC, C subunit n=2 Tax=Synergistaceae RepID=D1B5F2_THEAS Length = 479 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 143/244 (58%), Gaps = 5/244 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDVT 69 ++++ +PGVY M D G VIYVGKAK L++R+ SYFR N AS + LV + I V Sbjct: 10 VRSLPERPGVYIMRDRDGNVIYVGKAKALRRRVMSYFRHGNFASPRLRKLVETVHDISVM 69 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 T TE EAL+LE I+ +P +NV L+ + YP+I ++ + PR+ + R + +G + Sbjct: 70 RTATEAEALILEARLIRQLKPFFNVELKMSERYPYIRVTQERFPRVMVTR-VRKGEGLFI 128 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLVSEEEY 188 GP+ +RE L LL + FP+R+C + RPC+ + IG+CL PC GL E Y Sbjct: 129 GPYVKVRELRELLRLLDRFFPLRKCSFPIEPPYDRRPCIYHAIGKCLAPCA-GLCDEGTY 187 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQN-LEFEEAARIRDQIQAVRRVTEKQFVSN 247 + V + L G+ ++ +L RME A+ N L FEEAA IRD I+A+ RV + ++ Sbjct: 188 RRMVAEAVMLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIWRVGRQAPMAQ 247 Query: 248 TGDD 251 GD+ Sbjct: 248 VGDE 251 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 28/300 (9%) Query: 326 KTLLADSLSELAGRKINV--QTKPRGDRARYLKLARTNAA-----TALTSKLSQQSTVHQ 378 + ++A+++ L GR ++ + K R + A Y +LA AA ++ +Q+ + Q Sbjct: 188 RRMVAEAVMLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIWRVGRQAPMAQ 247 Query: 379 --------RLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 L AL LKLP++ R+E +DISH +G TV S VVF+ P +A YRRYN Sbjct: 248 VGDEDPLPMLWALQERLKLPQLPWRIEGYDISHHLGSDTVGSRVVFEQGRPNKALYRRYN 307 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 I G T GDD+ A+ QV+RRR+ + +P++ILIDGG+ QL A ++ V N Sbjct: 308 IEG-TLGDDFRALEQVMRRRFTGSGSGDLMPNLILIDGGRVQLEFALRALDDMGV----N 362 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 P+ +AKG E ++ + L AL ++Q +RDE+H A+ HR +R Sbjct: 363 VPMA-SLAKGE------EEIYLPGRVDPLRLDRSDGALRMLQMVRDEAHRFAVSSHRDRR 415 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + + LE I GVG + LL G ++ + +AS++E+A + GI + LA++I LK Sbjct: 416 GRRMRRTRLEDIPGVGKAKASQLLSRFGSVRNVASASLDELASMRGIGERLAKRISDHLK 475 >UniRef50_Q7UPD6 Excinuclease ABC subunit C n=5 Tax=Planctomycetaceae RepID=Q7UPD6_RHOBA Length = 474 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 137/239 (57%), Gaps = 8/239 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVT 69 +KT PGVY M D+ G VIYVGKAK+L+ R SSYF ++ +T + I ID Sbjct: 49 VKTFPQSPGVYLMKDSAGVVIYVGKAKNLRSRASSYFLKAASEDARTADWIGDIADIDFV 108 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEY 128 T +E +ALL+E IK QPR N L+DDKS+P++ ++ + PR+ + R + Sbjct: 109 ETESEVDALLMESRLIKDIQPRNNKELKDDKSFPYLMITTREEFPRVEVTREPPSKGVKL 168 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-----RPCLQYQIGRCLGPCVEGLV 183 +GPF + A+R + ++Q+IF R C + + RPCL I +C PC + Sbjct: 169 YGPFTSAGALRGAIQVMQRIFKFRTCSLDISESDERWQWFRPCLLASINQCTAPC-NFRI 227 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 S+E+Y + ++ ++ FL G ++L ++ M+ AS+ L+FE AA +RD+I + R+ E+ Sbjct: 228 SKEDYRRDIKRLQTFLDGGKTKLLREMRGEMKAASKALDFERAAVLRDEINMIERLEER 286 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 16/182 (8%) Query: 380 LTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDD 438 L L VL L E R +E DI+H G +TVAS V F P + YRR+ I + DD Sbjct: 306 LAGLKKVLGLSETPRVIEGVDIAHLGGNETVASLVQFIDGLPFKPGYRRFRIQEVKGIDD 365 Query: 439 YAAMNQVLRRRY-GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 + ++ +V+ RR+ G + PDV+LIDGGKGQL A F + D+ P ++ +A Sbjct: 366 FRSIYEVVSRRFRGLSDRQESFPDVLLIDGGKGQLNAAMAAFRDQDI----QPPTVISLA 421 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 K E +F E L ++ AL ++Q++RDESH A H R+K SS Sbjct: 422 KRD------EEIFRPGISEPLKLSKNAFALRLLQYVRDESHRFAQHYHHILRSK----SS 471 Query: 558 LE 559 LE Sbjct: 472 LE 473 >UniRef50_B2KBS4 Excinuclease ABC C subunit domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBS4_ELUMP Length = 437 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 120/395 (30%), Positives = 191/395 (48%), Gaps = 37/395 (9%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKT--EALVAQIQQID 67 + PGVY M G V+Y+GKAK+L R+ YF SNL SR +L+ + +ID Sbjct: 5 FNILPKSPGVYIMRSGLGEVLYIGKAKNLAARVRQYFLESNLHSRGWLLPSLLPLVAKID 64 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 V +E +AL+LE IK Y+P +N +DDKSYP+I +S + PR + R K GE Sbjct: 65 YIVAASERDALVLESRLIKKYKPFFNTDGKDDKSYPYIKISDEDFPRGLLTRN-KKGPGE 123 Query: 128 YFGPFPNGYAVRETLALLQK--IFPIRQCENSVYRNRS------RPCLQYQIGRCLGPCV 179 Y+GP PN +A++ L L P+R C+ + ++ R C+ + G+C PC Sbjct: 124 YYGPHPNAFAIKSLLRFLWTSGFAPLRPCKWNFSLSKPLDERKIRTCVYFHTGQCPAPCA 183 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G +S ++Y + V+ R F G ++ L M+ AS+N+++E AAR RD + + R+ Sbjct: 184 -GKISYKDYQKIVQRFRDFAEGNFGKMKHGLAKAMKMASKNMDYESAARYRDFLNTLERM 242 Query: 240 TEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +E+ VS D + I A DA R G+VLG F KVP E + + Sbjct: 243 SERILVSEYKD--EKILSAIDASSKVK-----RLGEVLG----FAKVPRHIETFDTSGLY 291 Query: 300 ----VGQF--YLQG----SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 VG Y+ G + R + +L +D L+ ++E+ GR++ K G Sbjct: 292 GRYAVGSMVCYIDGKKHHAHYRRFKIKSVLPGTGNDDFLM---MTEIVGRRLAALKKAGG 348 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALA 384 + + + +Q++ V + +LA Sbjct: 349 ALPDLMVIDGGKGQLGMAEAAAQRAGVKMKFISLA 383 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 18/180 (10%) Query: 378 QRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG 436 ++ L VL +V R +E FD S G V S V + A YRR+ I + PG Sbjct: 264 SKVKRLGEVLGFAKVPRHIETFDTSGLYGRYAVGSMVCYIDGKKHHAHYRRFKIKSVLPG 323 Query: 437 ---DDYAAMNQVLRRRYGKAIDDS--KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHP 491 DD+ M +++ RR A+ + +PD+++IDGGKGQL A+ V Sbjct: 324 TGNDDFLMMTEIVGRRLA-ALKKAGGALPDLMVIDGGKGQLGMAEAAAQRAGVKMK---- 378 Query: 492 LLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAK 551 + +AK E +F E LP PAL+++ +RDE H I HR R K Sbjct: 379 -FISLAKRE------EEIFVTGRSESIKLPIGDPALNLLMEMRDEVHRFGITYHRHLRDK 431 >UniRef50_B3E0M3 Excinuclease ABC subunit C n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0M3_METI4 Length = 486 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 137/242 (56%), Gaps = 8/242 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF---RSNLASRKTEALVAQIQQID 67 ++ + +PGVY D VIYVGKA DL KR+S YF R A RK ALV ++ Sbjct: 9 IRDLPHKPGVYLFKDRFNRVIYVGKAVDLHKRVSQYFHPSRRLRADRKLNALVEAAVDLE 68 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V H+E EA+LLE IK ++PRYNV RDDK + + + + PR + R K Sbjct: 69 YYVVHSEAEAVLLEGRLIKEFRPRYNVSFRDDKRFLLVKVDLSEPFPRFQVTRLKKQDNA 128 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLVSE 185 YFGPF + A+R TL L++K F +R C + + + CL + I C PC+ +S+ Sbjct: 129 RYFGPFASSSALRTTLNLMKKKFGLRSCSALIPSEKDYKHCLDHIIKNCSAPCI-AKISQ 187 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE--KQ 243 EY ++V+ FL GK +++ ++ +ME A+Q +FE+AA +R+ ++A+ T ++ Sbjct: 188 AEYLERVKMACAFLEGKSKEMIDEIRLKMEEAAQAQDFEKAAELRNLLEALEETTRPARR 247 Query: 244 FV 245 FV Sbjct: 248 FV 249 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 136/251 (54%), Gaps = 12/251 (4%) Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRM-ECFDISHTMGEQTVASCVVFDAN 418 T A +L + S+ + L L +VL LP+V + ECFDIS+ VAS V F Sbjct: 242 TRPARRFVKQLPKVSSPLEDLEELQAVLALPQVPHLIECFDISNISSTHKVASMVTFREG 301 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKN 477 R+ YRRY I + DD+A M +V+RRRY + +D+ ++PD+I++DGGKGQL+ A Sbjct: 302 KADRSSYRRYRIKTVAGQDDFACMQEVIRRRYKRVLDEGGRLPDLIVVDGGKGQLSSALK 361 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 L + N ++G+AK E ++ E + L S AL ++Q IRDE+ Sbjct: 362 ALHSLQL----NDLCVIGLAKEN------EEIYREALPDPLVLDKRSKALRLLQRIRDEA 411 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H A H+ K S L+ G+ R+++L++ G ++ ++ +SVEEIA V GI Sbjct: 412 HRVANSYHQLLLKKRMRESILDDCPGISENRKKLLIRAFGSIEKIKKSSVEEIAAVKGIG 471 Query: 598 QGLAEKIFWSL 608 + LAE+I L Sbjct: 472 KKLAEQILSFL 482 >UniRef50_A5KSN0 Excinuclease ABC, C subunit domain protein n=2 Tax=candidate division TM7 RepID=A5KSN0_9BACT Length = 440 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 96/256 (37%), Positives = 146/256 (57%), Gaps = 10/256 (3%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEAL 59 M+ + +AK LKT+ PGVY DA G +IYVGKA LK R+ YF+ N KTEAL Sbjct: 4 MNKKLEAK--LKTLPRSPGVYFHKDARGKIIYVGKAAILKNRVRQYFQKNRPHDIKTEAL 61 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 VA+I D T TE +AL LE IK Y+PRYNVLL DDKS F+ ++ D +P ++ Sbjct: 62 VAEIADTDWTTVETEIDALFLESEMIKRYKPRYNVLLCDDKSQLFVRINMQDVYPYVSFT 121 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R + EY+GP+ NG+AV++ L L++ FP E R CLQY +G C G Sbjct: 122 RWPQDDSAEYYGPYYNGWAVKKALRYLRRAFPYSTHETMP----KRVCLQYHLGLCPG-V 176 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 E +S +Y + + +L G+ ++ + M+TA+ ++E AA+ R+Q++ ++ Sbjct: 177 EEQKISSADYKVTLRKLIRYLKGERKALVRDIEQEMKTAAARKDYELAAKKRNQLRDLKE 236 Query: 239 VTEKQFVSNTGDDLDV 254 + +Q + + + LD+ Sbjct: 237 LG-RQVIFSDREFLDI 251 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Query: 394 RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGD-DYAAMNQVLRRRYGK 452 R+E +DISH G VAS VV +A+YR++ + PG+ D+A M++V+ RR+ Sbjct: 272 RIEGYDISHMSGTNNVASMVVATNGLADKAQYRKFKMQ--LPGNNDFAHMHEVISRRFSG 329 Query: 453 AIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 PD++LIDGGKGQL A E VS Sbjct: 330 RHTSWPTPDLLLIDGGKGQLQAALKALEEKGVS 362 >UniRef50_B9XGZ6 Excinuclease ABC C subunit domain protein n=2 Tax=Verrucomicrobiales RepID=B9XGZ6_9BACT Length = 559 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 134/237 (56%), Gaps = 6/237 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF---RSNLASRKTEALVAQIQQID 67 L + +PG+Y M D GTVIYVGKA+DL+KR+S YF R K +AL I +D Sbjct: 11 LNELPHKPGIYLMKDRFGTVIYVGKARDLRKRVSQYFHPSRKMGWDLKFKALTEAIYDLD 70 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V V +E EALLLE IK + PRYN+ +DDK + + ++ D PR + R + Sbjct: 71 VHVVRSEPEALLLEGKLIKEFHPRYNISFKDDKRFLMLKVNLNDPIPRFTLTRFKQDDGA 130 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLVSE 185 YFGPF + A++ TL ++++ F +R C R + CL + C PC+ G V+ Sbjct: 131 RYFGPFAHSSALKNTLTMIRRQFHLRGCRPLTPNERDYKHCLYGNLKHCTAPCI-GNVTR 189 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 E+Y QV+ FLSG+ +++ QL M+ A+ ++E AA +RD I +R+ T+K Sbjct: 190 EQYLAQVQAACDFLSGQGEEMQEQLAEEMKKAAAAQDYERAAMLRDAISDLRQTTKK 246 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 49/260 (18%) Query: 380 LTALASVLKL--PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGD 437 L L VL L P + R+E FDIS+ G V+S V F P R+ YR++ + + + Sbjct: 267 LAELGQVLDLAGPPM-RIEGFDISNISGTFAVSSLVSFKNGRPDRSNYRKFKMKSVVGQN 325 Query: 438 DYAAMNQVLRRRYGKAIDDSK------------------------------------IPD 461 D+A M + +RRRY + + + K +PD Sbjct: 326 DFACMAETIRRRYSRLLREGKEARKAMEAASANAVPQPSENASEVQPALPGSPLPSNLPD 385 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +ILIDGGKGQL A +L +S ++G+AK E ++ + E L Sbjct: 386 LILIDGGKGQLNAACEELEKLGLSQIP----IIGLAKE------FEEIYRPGQSEPLRLS 435 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 S AL ++Q +RDESH A + + R K + S L+ +G +R+ LLK G +Q Sbjct: 436 HASGALKLLQRVRDESHRLANTYNAELRLKKISESILDEFPNIGQRRKADLLKKFGSVQR 495 Query: 582 LRNASVEEIAKVPGISQGLA 601 LR A+VE+IA+VPG +A Sbjct: 496 LRIATVEQIAEVPGFGGKMA 515 >UniRef50_D2R0D2 Excinuclease ABC C subunit domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0D2_9PLAN Length = 493 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 8/235 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQ 65 A A ++ PG+Y M D G VIYVGKAK+L+ R SYF R +T V +I Sbjct: 64 AAAKVREFPRTPGIYLMKDDAGRVIYVGKAKNLRSRAGSYFLRGAKEEYRTAIWVDEICD 123 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHA 124 ID +E +ALL+E IK QP++N L+DDK++P++ +S + PR+ + R Sbjct: 124 IDYVECESEVDALLMEARLIKDIQPKHNKELKDDKTFPYLMISTREDFPRVEVTRQPADR 183 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQC----ENSVYRNRS-RPCLQYQIGRCLGPCV 179 + FGPF + ++R + +LQ+IF R C E+ R R RPCL I +C PC Sbjct: 184 GVKLFGPFASAGSLRGAVQVLQRIFKFRTCSLDIEDGDDRWRWFRPCLLASIQQCTAPC- 242 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 +S++EY + ++ + FL G ++L QL M+ AS+ L+FE AAR+RD+I+ Sbjct: 243 NLRISKDEYRRDIDRLITFLEGGKTRLLKQLTLEMQAASKALQFEVAARLRDEIK 297 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 12/174 (6%) Query: 380 LTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDD 438 L L VL L E R +E DI+H G +TVAS V F P +A YRRY I G+ DD Sbjct: 325 LAGLKKVLGLAEQPRTIEGMDIAHLGGGETVASVVQFLDGLPFKAGYRRYRIVGVDGIDD 384 Query: 439 YAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 + +M++V+ RRY K +D+ + PD++LIDGGKGQL A F + D+ P ++ +A Sbjct: 385 FRSMHEVVSRRYRKRVDEGEPFPDILLIDGGKGQLNAAMAAFRDQDI----KPPTVISLA 440 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAK 551 K E +F E E L + AL ++Q++RDE+H A H R K Sbjct: 441 KQE------EEIFLPGERESIKLSRHAFALRLLQYVRDEAHRFAQHYHHILRRK 488 >UniRef50_B8FTB6 Excinuclease ABC C subunit domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FTB6_DESHD Length = 376 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 181/373 (48%), Gaps = 27/373 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M D+ K LK + QPGVY M D+ G +IYVGKAK+LK R+S YF + K E + Sbjct: 1 MEDKNCLKEKLKDLPEQPGVYLMQDSLGNIIYVGKAKNLKNRVSQYFYKQKDRDPKVEEM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 + +I + + TE +ALL E IK +P YN +++ + Y +I + ++ PRL + + Sbjct: 61 ILRIADWEYRIVDTELDALLEECRLIKEIKPHYNRQMKNHQKYVYIKIPDESFPRLDIVQ 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + G Y+GPF + + V + L IF IR+C CL Q+G C+G C Sbjct: 121 EREAGGGIYYGPFSSRHRVETAVEGLSDIFLIRKCSAPGRSKGGNGCLYRQLGTCVGVCT 180 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G VS EEY ++++ V + D + +L SRM A + L FE AAR R+ + +R + Sbjct: 181 -GKVSSEEYRERLDGVCQAIEAGDKGAMKELSSRMARAVEGLNFEMAARYREYLLGLRYI 239 Query: 240 TEKQ-FVSNTGDDLDVIGVA-FDAGMACVHVLFIRQGKVLGSR----------SYFPKV- 286 +Q F+ T + ++ + D V V I+ +V+ SR + ++ Sbjct: 240 QGRQKFLKGTYRNKSLLALEQLDTEKKTVKVFLIKGNRVVTSRVLTWLDEDLKQFLREIT 299 Query: 287 ------PGGTE---LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELA 337 PG + EV E + YL+ ++ ++P + L + D L + Sbjct: 300 QALADQPGCSRQLTQQEVDEAQILDSYLRKDRVISIP---ITQKALKQGAFVEDMLKRIN 356 Query: 338 GRKINVQTKPRGD 350 ++IN + K +GD Sbjct: 357 LKRINEEEKKKGD 369 >UniRef50_D1N623 Excinuclease ABC, C subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N623_9BACT Length = 505 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 144/272 (52%), Gaps = 18/272 (6%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR---KTEALVAQIQQIDVTV 70 + ++PGVY D G VIYVGKA +L++R+SSYF+ + R K +L+ I V Sbjct: 31 IPAKPGVYVYRDRFGKVIYVGKAANLRRRMSSYFQPSRVVRADAKLRSLINSISDWSYEV 90 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH---PRLAMHRGAKHAKGE 127 TE EAL+LE IK + P YNVL+RDDK Y + L D H P L + R K+ + Sbjct: 91 VRTEDEALILESRLIKDFAPHYNVLMRDDKRY--LLLKIDWHEKFPTLKLARLKKNDGAQ 148 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-CLQYQIGRCLGPCVEGLVSEE 186 YFGPFP G A++ TL L F +R C +S +R CL+ + C PC G V+ E Sbjct: 149 YFGPFPKGGALKMTLEFLLAHFGLRACRDSEPDEETRKRCLKRIVKDCCAPCT-GAVTPE 207 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 EY ++VE L+G ++ + +M A+ FE+AA +RD + + V K+ + Sbjct: 208 EYRERVEQAVAVLNGDIAELTAAIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGKR--N 265 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLG 278 + ++ G A GMA V L G+ LG Sbjct: 266 RIFERPELPGTA--PGMAAVRAL----GEALG 291 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 133/224 (59%), Gaps = 16/224 (7%) Query: 388 KLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLR 447 KLP R+ FDIS+ +G+ VAS V F P R YRR+ I + DD+A M++VL Sbjct: 294 KLPS--RIIGFDISNILGKLAVASLVAFKEGRPDRDNYRRFKIRTVHQSDDFAMMHEVLV 351 Query: 448 RRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL-LLGVAKGADRKAG 505 R +G+ +++ + +PD++++DGGKGQL+ A + E+ PL ++G+AK Sbjct: 352 RHFGRLLEEKRPLPDLVMVDGGKGQLSSAIDALVEIGCP-----PLPVIGLAKRN----- 401 Query: 506 LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVG 565 E ++ E L +PAL ++Q +RDE+H AI HR+ R K S L+ I+G+G Sbjct: 402 -EEIYLPGRSEPVVLDRHNPALRMLQALRDEAHRFAITYHRELRNKRIEQSRLDEIQGIG 460 Query: 566 PKRRQMLLKYMGGLQGLRNASVEEIA-KVPGISQGLAEKIFWSL 608 R++ LL+ G L+ L+ A+ +EIA KVPGI + LAEKI +L Sbjct: 461 DTRKKQLLRAFGSLRALKKATPDEIAEKVPGIGEALAEKILAAL 504 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 5/238 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQIQQIDVT 69 L V +PGVY M + GT +Y+GKAK L RL S+F + +S + ++ +++ +D T Sbjct: 184 LPDVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVDWT 243 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEY 128 T TE EA+LLE IK +PRYN R + PFI L + +P ++ R + EY Sbjct: 244 TTATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGAEY 303 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 +GP N + ++ + F +R+C++ R CL + RC PC E Y Sbjct: 304 YGPVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPC--ETKDAEAY 360 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 A VE VR FL+G+D VL + RM+ AS NL FE+AA +RD ++ + R+ EKQ V+ Sbjct: 361 ATVVERVRAFLTGQDQSVLGTMRDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVA 418 >UniRef50_B1ZNL0 Excinuclease ABC C subunit domain protein n=2 Tax=Verrucomicrobia RepID=B1ZNL0_OPITP Length = 510 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 11/226 (4%) Query: 380 LTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDY 439 L AL L P + +ECFDISH G VAS V F P + YRR+ I DD+ Sbjct: 268 LRALGEALARPPPRTIECFDISHISGTFVVASMVHFANGRPDKDNYRRFQIKSFIGNDDF 327 Query: 440 AAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK 498 AM +V+ RRY + ++ + PD+++IDGG+GQ+ A F V+ D P+++G+AK Sbjct: 328 RAMEEVVGRRYRRLAEEGRSFPDLVVIDGGRGQIGAAIKAF----VAADLTPPVIIGLAK 383 Query: 499 GADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSL 558 ET+FF E +LP + P L+++Q +RDE+H A + R+K S L Sbjct: 384 KH------ETIFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANTYNAVLRSKKIRESVL 437 Query: 559 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 + G+GP RR LL + G + LR AS+EEI +V G LA ++ Sbjct: 438 DDFAGLGPVRRAALLAHFGSIDRLRAASIEEIGEVEGFGPKLAAEL 483 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 9/239 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR----KTEALVAQIQQI 66 ++ + +PGVY M D G ++YVGKA+ LKKR+SSYF+ A K AL+ I Sbjct: 13 VRQLPDKPGVYLMKDRLGRILYVGKARSLKKRVSSYFQQGRARTVMQPKIRALIPLIHDF 72 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D +E EALLLE IK ++PRYN DDK + + + + PR + R K Sbjct: 73 DTIEVKSEPEALLLEGKLIKQWRPRYNTDFTDDKRFLLVRVDLREELPRFRLTRLKKDDG 132 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR--CLGPCVEGLV 183 YFGPF + +R+TLA +++ F I + + ++ Y R G + V Sbjct: 133 SRYFGPFAHSGLLRKTLAQMRRQFGILLGDGTPHKLADGTWQLYDDVRQEIYGGMLH--V 190 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + E Y ++V+ FL GK + L L + M A+ FE+AA +RD I A+ K Sbjct: 191 TPEAYRRRVDDACAFLEGKSREWLETLRAEMAEAATKQLFEKAAELRDVIFALEETLAK 249 >UniRef50_Q7NKN5 Excinuclease ABC subunit C n=1 Tax=Gloeobacter violaceus RepID=Q7NKN5_GLOVI Length = 370 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 23/306 (7%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 L+ + PGVYR D G ++Y+GK+ L+ R+ SY R + SR+TE L + Q ++V Sbjct: 12 LEDLPDAPGVYRFVDCDGRLLYIGKSVHLRTRVRSYLRRDGGHSRQTERLKFEAQAVEVL 71 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 T +E ALLLE I+ Y P +N + + YPF+ LS + +PRL + R EY Sbjct: 72 CTGSELAALLLEGRLIREYLPPFNQAQKRYRQYPFLRLSVQEDYPRLHLTRVLAGDGAEY 131 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCEN--SVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +GP+ V LL +R C + ++Y CL Q+G+CLGPC G + Sbjct: 132 YGPYSQARFVSWMADLLSASLGLRTCRDFSAIYHG----CLLDQLGKCLGPCRTGALV-A 186 Query: 187 EYAQQVEYVRLFLSGKD--DQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +Y ++VE +R L G+D ++ +M A+Q +FE+AAR RD+ QA+ F Sbjct: 187 QYRERVERLRALLRGEDTGSGIIVDFERQMLNAAQREDFEQAARWRDRRQAL-----ANF 241 Query: 245 VSNTGD-----DLDVIGVAFDAGMA--CVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 V++ G LD + V A + V + +IRQGK+ +S+ +P +E+ Sbjct: 242 VTHQGHLRERVSLDAVAVYPGAPRSPTSVQLFWIRQGKLTLQQSFAGDLPQERLRAELAH 301 Query: 298 TFVGQF 303 T G + Sbjct: 302 TLAGHY 307 >UniRef50_A6DMD6 Excinuclease ABC subunit C n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMD6_9BACT Length = 486 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 6/231 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN---LASRKTEALVAQIQQIDV 68 + ++S PGVY D VIYVGKAK L+KRL++YF+++ A K +L+ I + Sbjct: 10 RKISSDPGVYVFRDRFAKVIYVGKAKSLRKRLATYFQASRLATADPKLRSLINSIAFYET 69 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGE 127 +E+EALLLE +IK Y P YN+L+RDDK++ + ++ + +PR+ + R K Sbjct: 70 YEVKSESEALLLESRFIKEYSPHYNILMRDDKNFYLVKVTINEPYPRILLTRVRKDDGAA 129 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR-CLGPCVEGLVSEE 186 YFGPFP A+R T+ L + F +R C + + R + QI R C PC + V++E Sbjct: 130 YFGPFPCSSAIRSTVEFLTRYFKLRTCTSRIPDLSDRKHCKEQILRNCSAPCDQS-VTQE 188 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 +Y + V + L G+ ++ +L M+ + L+FE+AA RD I ++ Sbjct: 189 QYRESVGDMIKVLEGQIADIVDELNEAMQNYVEKLQFEKAATYRDIITNLK 239 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 12/217 (5%) Query: 395 MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI 454 +ECFD S+ G VAS V F P YR + I + DD+A+M +++ RRY + + Sbjct: 278 IECFDNSNFQGTHAVASMVRFVDGKPDNKSYRHFKIKTVEGPDDFASMKEIVYRRYSRLL 337 Query: 455 DDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP 513 + + +PD+ILIDGGKGQL+ A EL + +H G+AK E LF Sbjct: 338 REKRPLPDLILIDGGKGQLSSALQSIDELGI----DHIPTYGLAKKH------ELLFTRN 387 Query: 514 EGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLL 573 + EG LP S L ++QH+RDESH AI HR+ R K S L+ I G+G KR+ LL Sbjct: 388 DSEGKILPRTSAGLKMLQHLRDESHRFAINFHRQLRRKQVANSLLDDIPGIGKKRKMTLL 447 Query: 574 KYMGGLQGLRNASVEEIAK-VPGISQGLAEKIFWSLK 609 + G ++ +R AS ++IA+ VPG+ + A I LK Sbjct: 448 NHFGSVREIRKASPQDIAEAVPGLGEKSAHMILEYLK 484 >UniRef50_A7GIE5 GIY-YIG domain protein n=10 Tax=Clostridium RepID=A7GIE5_CLOBL Length = 365 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVTV 70 K + PG+Y M D+ +IYVGK+K+L+KR+ SYF + N A+ K E L+ I+ Sbjct: 8 KLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQYIC 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T TE EALLLE +IK +P+YN L+++ + Y +I ++ D +P + + K Y+ Sbjct: 68 TDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYLYY 127 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF N + + + L +I P+ +C N Y C+ Y IG+C GPC+E +S ++Y Sbjct: 128 GPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIEN-ISSKQYK 184 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 + ++ V F G+ D ++ L M + LEFE+A +D I + Sbjct: 185 KYIDKVISFFQGEKDLIIL-LEKYMREYCETLEFEKAKIFKDYIDVFNSI 233 >UniRef50_Q1NJF8 Helix-hairpin-helix motif (Fragment) n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJF8_9DELT Length = 303 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 139/258 (53%), Gaps = 5/258 (1%) Query: 348 RGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGE 406 RGD+ + +A NAA L Q+ Q TA+ ++L + R+EC DIS+ G+ Sbjct: 43 RGDKKALVGMAHDNAAQVLAEHGRQEQQWEQLATAIQQAMQLVQPPTRLECLDISNLGGQ 102 Query: 407 QTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILID 466 Q V S + F++ YRR+ I DDYA M +VL R + +PD++L+D Sbjct: 103 QAVGSLISFNSGVKEPGRYRRFKIRTRDTPDDYAMMREVLWRHLSRGWQQQSLPDLLLLD 162 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL A+ V AEL ++ DK P L +AK +R+ E +F L P+SP Sbjct: 163 GGKGQLGVAQAVVAELGLAADK--PALAAIAK--EREGEGERIFLPGRKNPLKLAPNSPV 218 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L + +RDE+H I HRK R++ + S L+ I GVGP R+ LLK +G L+ +R AS Sbjct: 219 LLFMMRLRDEAHRFGITHHRKLRSQQQLASGLDRIPGVGPARKAALLKTLGSLEAVRGAS 278 Query: 587 VEEIAKVPGISQGLAEKI 604 E+A V GI LA I Sbjct: 279 RAELAAVSGIGPELAAVI 296 >UniRef50_A4CG28 Excinuclease ABC, C subunit (Fragment) n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CG28_9GAMM Length = 256 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 126/218 (57%), Gaps = 11/218 (5%) Query: 380 LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDD 438 L L + L L ++ +ECFDIS+ G+ TVAS V+F P + EYR+Y I + DD Sbjct: 31 LIDLKNKLNLKKIPFHIECFDISNIQGKNTVASMVLFKDGYPNKKEYRKYKIRSVDKPDD 90 Query: 439 YAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 + +M +V+ RRY + I + + +PD+I+IDGGKGQL+ A ++ EL V N ++G+A Sbjct: 91 FESMREVVSRRYTRIIREGNPLPDLIIIDGGKGQLSSACDILKELKVY---NKINIIGIA 147 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 K LE ++F + L S L +IQ+IR+E+H AI H++ R+ S Sbjct: 148 K------KLEEIYFPNDSIPVLLGKKSEQLKLIQNIRNEAHRFAINYHKQLRSNTFIQSE 201 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 LE I G+G K R L++ G ++ ++ A +++ K+ G Sbjct: 202 LEEIYGIGDKTRGKLIRAFGSIENIKKADRKDLIKLVG 239 >UniRef50_C0A483 Excinuclease ABC C subunit domain protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A483_9BACT Length = 540 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 123/233 (52%), Gaps = 12/233 (5%) Query: 380 LTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDD 438 + AL L LP R +ECFDISH G VAS V F P + YRR+ I DD Sbjct: 302 MRALGEALGLPAPPRTLECFDISHISGTFVVASMVHFADGRPDKNNYRRFQIKSFIGNDD 361 Query: 439 YAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 + AM +V+ RRY + ++ K PD+I+IDGG+GQ+A A FA +D P L+G+A Sbjct: 362 FRAMEEVVGRRYRRLREEGKPFPDLIVIDGGRGQIAAALKAFAIIDAP----PPPLIGLA 417 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 K ET+ F E +LP PAL ++Q +RDE+H A + R++ S Sbjct: 418 KKH------ETIIFPDERAPLNLPLTHPALSLLQRLRDEAHRFANTYNADLRSRKIRESV 471 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 L+ +G+G RR LL + G + LR A+ +I +V G LA ++ L H Sbjct: 472 LDDFDGLGEVRRAALLAHFGDIDRLRAATEAQIREVSGFGPKLAAELHAWLHH 524 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 5/155 (3%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR----KTE 57 ++ + K ++ + +PGVY M D G +IYVGKAK LKKR+SSYF + A+R K Sbjct: 4 TEPVNLKEKVRHLPDKPGVYLMRDRLGRIIYVGKAKSLKKRVSSYFMPSRAARELHPKIR 63 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLA 116 AL+ I D +E EALLLE IK ++P+YN DDK + + + + P+ Sbjct: 64 ALIQLIADFDTIEVKSEPEALLLEGRLIKEWRPKYNTDFTDDKRFLLVRVDPMEPLPKFR 123 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPI 151 + R K + YFGPF + +R+TLA +++ F I Sbjct: 124 LTRIRKDTRSRYFGPFAHSGLLRKTLAQMRRQFGI 158 >UniRef50_A6M201 Excinuclease ABC, C subunit domain protein n=5 Tax=Clostridium RepID=A6M201_CLOB8 Length = 366 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 141/283 (49%), Gaps = 7/283 (2%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQ 64 D K +K + S PGVY M D+ VIYVGK+K+LK R+ SYF S S K LV ++ Sbjct: 4 DLKEKVKKLPSSPGVYLMKDSLNNVIYVGKSKNLKSRVGSYFINSKSHSPKILKLVQNLK 63 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFI-FLSGDTHPRLAMHRGAKH 123 + +T TE EA LLE IK +P YN L+++ KSY +I + + +P + + + Sbjct: 64 DFEYKITDTEFEAFLLECELIKKIKPAYNRLMKNPKSYSYIKIVLNEKYPNIEISHESNE 123 Query: 124 AKGE-YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 G YFGP+ + L +++ I QC S+ + ++ C Y +G C+G C++ Sbjct: 124 TDGNIYFGPYSRKNIAEKGLYGIKEYCKI-QC--SINQRKTSSCFNYSLGLCIGMCLDT- 179 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 EEY + + L+G D +L ++ M +AS+ +FE AA+ RD I +V + EK Sbjct: 180 TPREEYLNILNKIINLLNGNDKIILQEMEHIMNSASEKFDFETAAKYRDYISSVNYLLEK 239 Query: 243 QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK 285 + I + V IR K+L S Y K Sbjct: 240 IKIIKFTKKNRNIALLEYLDNDRVKFFLIRGNKILFSEKYILK 282 >UniRef50_B4CU00 Excinuclease ABC C subunit domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU00_9BACT Length = 627 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 148/301 (49%), Gaps = 28/301 (9%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR---KTEALVAQ 62 D KA + V +PGVY M D VIYVGKA++L+KR+ YF + A R KT AL+ Sbjct: 9 DFKAKMHDVPHKPGVYLMRDRFHRVIYVGKARNLRKRVGQYFTPSRAMRADLKTRALLDA 68 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 I + + +E EALLLE IK ++PRYN+ RDDK + + + + PR + R Sbjct: 69 IWDFEWHLVGSEPEALLLEGRLIKEFRPRYNISFRDDKRFLLVKVDMREEWPRFRLTRMK 128 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 +YFGPF + A+R+TLA ++K F + R YQ+ P Sbjct: 129 NDESAKYFGPFAHAGALRQTLAFMRKKFGVLTFGRGNPSERELKSSTYQV-----PMKLA 183 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + E+Y ++V+ FL+G+ ++L L M+ A+ L+FE+AA +R+ + +R+ T+ Sbjct: 184 DTTMEQYRERVDRACEFLAGQSKELLEALEQEMKKAAAALDFEKAAELRNMLDDLRKTTK 243 Query: 242 KQF-----------VSNTGD---DLDVIGVAFDAG-----MACVHVLFIRQGKVLGSRSY 282 V++T D DL +G A G M C + I ++ S Sbjct: 244 PMARYTRDMRHRLGVTSTVDPVADLAALGDALGLGGPPRRMECFDISNISTTHIVASMVC 303 Query: 283 F 283 F Sbjct: 304 F 304 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 109/259 (42%), Gaps = 57/259 (22%) Query: 380 LTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDD 438 L AL L L +RMECFDIS+ VAS V F P YRR+ I + DD Sbjct: 268 LAALGDALGLGGPPRRMECFDISNISTTHIVASMVCFVDGRPANYLYRRFRIKTVEGQDD 327 Query: 439 YAAMNQVLRRRYGKAIDDS----------------------------------------- 457 +A+M +V+RRRY + + ++ Sbjct: 328 FASMGEVVRRRYTRVLHEAAVGASRAPSSKAESEEHIDYAPQFSQEKLRDAVARVGDEPE 387 Query: 458 -----KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFE 512 ++P +I++DGGKGQL+ A L + ++G+AK E ++ Sbjct: 388 TPGVPRLPSLIIVDGGKGQLSAACRELQRLRL----EEVPIIGLAK------EFEEIYRP 437 Query: 513 PEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQML 572 + LP DS AL ++Q IRDE+ + S L+ GV R+Q+L Sbjct: 438 GRPQPLQLPHDSGALQLLQRIRDEAAPLCQWLSPVLMKRRIAESILDDCPGVSQHRKQLL 497 Query: 573 LKYMGGLQGLRNASVEEIA 591 L+ G + LR A+ E+IA Sbjct: 498 LQKFGSVARLRRATAEQIA 516 >UniRef50_D1J7M2 UvrABC system protein C (UvrC protein, Excinuclease ABC subunit C) n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7M2_MYCHP Length = 568 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 153/608 (25%), Positives = 258/608 (42%), Gaps = 86/608 (14%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVT 69 +K V +PGVY + G +IYVGKAKDLK R+ YF + S KTE + +I Sbjct: 8 IKNVPHKPGVYLWKNKNGNIIYVGKAKDLKNRMLQYFDIKMQNSFKTEKMRQEIADFSTI 67 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAM---HRGAKHAKG 126 + +E EA + E I Y+P YNVL S+P+I + + +L + + K Sbjct: 68 ILSSEREAFIEERKLIDFYKPFYNVLFPTRDSFPYIRVKLLSTNKLIIDIKNHYKKEPNS 127 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 Y+GP P+ +P ++Y L +G++ E+ Sbjct: 128 IYYGPIPDN-------------------------KNFKPLIRYLNHLLLSK--DGIIIEK 160 Query: 187 ---EYAQQ-VEYVRLFLSGKDD--QVLTQLISRMETASQNLEFEEAARIRDQIQAV---R 237 E+A+Q E + + D + L Q I+ E NL FE+ AR DQI + Sbjct: 161 QSPEFAKQRFEQAKSIMKFGPDFKRNLKQKIN--EAIEMNL-FEQ-ARFYDQILDLLNYN 216 Query: 238 RVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + ++ F+ T D+DV G V+V+ + G ++ S Y ++ E V Sbjct: 217 KQSQNIFIK-TIKDIDVFGFYQYQNYMMVNVMIYKNGSLVNSYDYIFEIILNEH--EFVN 273 Query: 298 TFVGQFYLQGSQMRTLPGEILLD--------FNLSDKTLLADSLSELAGRKINVQTKPRG 349 F+ +FY+ LP +I++ F+ +DK ++ L++L I++ + Sbjct: 274 QFIDEFYVNNQ----LPAQIIIPLKYYELGGFDYNDK--VSAPLNKLNKNLIDIAIEN-- 325 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTV 409 A N + + LS+Q+ ++ L S L + +R+ FD S V Sbjct: 326 --------ASNNIEQKIKNYLSKQTKDNEIFNKLCSYLNV-YAERIVLFDNSFLSNTNEV 376 Query: 410 ASCVVFDANG-PLRAEYRRYNIT-GITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDG 467 + NG + YR YN+ + D M Q Y K + D DV+++DG Sbjct: 377 IGAACYFKNGQAFKKFYRFYNLKLNLLRNADVEYMQQT-SFNYLKDLGDQ--VDVVIVDG 433 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GQ+ + K A L++ N P L G+ K + ET D Sbjct: 434 SIGQINEVKKSMAFLNL----NIP-LFGLVKNSKH----ETQKLIDSNNNEIKIDDQDVF 484 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +++ ++ E A + +K+ K ++ L I+G+G K + L+ Y G + ++ AS Sbjct: 485 NLLSRMQTEVDRFAKYRYNQKQRKSMLSNPLLKIKGIGFKTIEKLINYFGSYKKIQQASF 544 Query: 588 EEIAKVPG 595 +EI+KV Sbjct: 545 DEISKVAN 552 >UniRef50_Q601Y1 Excinuclease ABC subunit C n=4 Tax=Mycoplasma hyopneumoniae RepID=Q601Y1_MYCH2 Length = 516 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 123/477 (25%), Positives = 217/477 (45%), Gaps = 70/477 (14%) Query: 16 SQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTET 75 +Q GVYR YD T++YVGKAK+LK R++ Y + S KTE L+ + ++I + ET Sbjct: 15 NQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQNET 74 Query: 76 EALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAM----HRGAKHAKGEYFGP 131 EAL+LE I +QP YN+ L+DD++YP+I L + + + R K ++GP Sbjct: 75 EALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFYGP 134 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 F N + + +L+KI EN V + + +Q SE E Q Sbjct: 135 FLN----KSSALVLKKI-----LENIVLYKKGQQIVQ---------------SEPEILNQ 170 Query: 192 VEYVRLFLSGK---DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV-TEKQFVS- 246 + FL K + ++++ ++E A +N +FE A + A+++ E+Q + Sbjct: 171 ----KFFLCKKILQEQKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIEL 226 Query: 247 NTGDDLDVIGVA-FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N ++D + + + F R G L ++++ + +EV+ F+ +Y Sbjct: 227 NNLKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDII--LNYTEVLINFLNNYY- 283 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART---NA 362 ++ P E+++ N K +E KIN++ G +Y + T N Sbjct: 284 ---KINIYPDELVVK-NFWPKN------AEFLDPKINIKI---GKSLKYKHILNTLAKNH 330 Query: 363 ATALTSKLSQQ---STVHQRLTALASV-LKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 ++ Q+ +Q++ L LK+ V+++ D S+ + + ++F N Sbjct: 331 QDFISHNFDQEIQKKIKNQKILGLVKASLKIENVEKIMAIDCSN-LESNYPTTGIIFYIN 389 Query: 419 GPLRAEYRR-YNITGITPGDDYAAMNQVLRRRYGKAIDDSKI--PDVILIDGGKGQL 472 G Y R +N G GD +R+ + K I + K PD+IL+DGG Q+ Sbjct: 390 GIYERNYNRFFNYRGTKKGDT-----NYMRQGFEKYIKNPKFLKPDLILVDGGIQQI 441 >UniRef50_B2URH7 Excinuclease ABC C subunit domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URH7_AKKM8 Length = 498 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 134/283 (47%), Gaps = 23/283 (8%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFR---SNLASRKTEALVAQIQQIDVTVTHTETEALL 79 M DA G IYVGKAKDL +RL +YF + L++ KT AL+ I D T + EA L Sbjct: 1 MKDARGNTIYVGKAKDLHRRLGNYFSPTGATLSNHKTRALINAIASFDYFETRNDQEAFL 60 Query: 80 LEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEYFGPFPNGYAV 138 LE IK Y+P YN+ ++DDK YP + + G+ PR + R K YFGPF + A+ Sbjct: 61 LESKLIKQYRPHYNIQMKDDKRYPLLKIPKGEKLPRFQLARVRKDDGARYFGPFVHSQAL 120 Query: 139 RETLALLQKIFPIRQCEN-SVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEY-VR 196 T L + F +R C+ + + R C I C PC+ G +S +Y + + VR Sbjct: 121 YATQEWLNRHFRLRTCKTKNPGIHDFRHCHADVIRNCSAPCI-GRISINDYNRNFDQAVR 179 Query: 197 LFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE--KQFVSNTGD---- 250 L L +L M A+ L+FE AA +RD + +V E ++F T D Sbjct: 180 LLEGTGRKSTLDELTGEMMEAADKLDFERAAYLRDIRDNLVKVLEPARRFRKRTPDLPGT 239 Query: 251 -----DLDVIGVAF-----DAGMACVHVLFIRQGKVLGSRSYF 283 D+ +GVA M C + + ++ S F Sbjct: 240 VHPEEDMKELGVALGLESPPTIMECFDISNVSSNHIVASMVRF 282 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 91/313 (29%), Positives = 147/313 (46%), Gaps = 51/313 (16%) Query: 332 SLSELAGRKINVQTKPRGDRARYLKLARTNAATAL--TSKLSQQS-----TVH--QRLTA 382 +L EL G + K +RA YL+ R N L + +++ TVH + + Sbjct: 189 TLDELTGEMMEAADKLDFERAAYLRDIRDNLVKVLEPARRFRKRTPDLPGTVHPEEDMKE 248 Query: 383 LASVLKL---PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDY 439 L L L P + MECFDIS+ VAS V F P YRRY I + +D+ Sbjct: 249 LGVALGLESPPTI--MECFDISNVSSNHIVASMVRFTNGRPDNKAYRRYRIRTVDGQNDF 306 Query: 440 AAMNQVLRRRYGKAIDDS---------------------------KIPDVILIDGGKGQL 472 A+M++V+RRRY + + +S K+PD++++DGGKGQL Sbjct: 307 ASMSEVIRRRYSRILAESDAVASRQADMTLYQWLKKLSAEGKAPIKVPDLVVVDGGKGQL 366 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + A A+L+ + P ++G+AK E +FF + + LP + AL ++Q Sbjct: 367 SSA---LADLEAIGLGDMP-IVGLAKQR------EEIFFPHQSQPLCLPHSTGALKLMQR 416 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H A G + K S+L+ G+ ++++LL+ + ++ A IA Sbjct: 417 IRDEAHRFANGYNELLYRKRMRESALDDAPGMSASKKRLLLEKFKSVTAIKKADPASIAA 476 Query: 593 VPGISQGLAEKIF 605 + GIS+ A + Sbjct: 477 IRGISETWARTLL 489 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q31GI3 UvrABC system protein C n=2 Tax=Bacteria RepID=U... 746 0.0 UniRef50_Q0A8X6 UvrABC system protein C n=19 Tax=Gammaproteobact... 735 0.0 UniRef50_Q820N6 UvrABC system protein C n=2 Tax=Proteobacteria R... 732 0.0 UniRef50_C7RAS4 Excinuclease ABC, C subunit n=1 Tax=Kangiella ko... 726 0.0 UniRef50_Q5F928 UvrABC system protein C n=29 Tax=Betaproteobacte... 725 0.0 UniRef50_B8CYK1 Excinuclease ABC, C subunit n=1 Tax=Halothermoth... 721 0.0 UniRef50_Q47EE8 UvrABC system protein C n=6 Tax=Proteobacteria R... 715 0.0 UniRef50_Q2SF17 UvrABC system protein C n=47 Tax=Proteobacteria ... 712 0.0 UniRef50_B6INU7 Excinuclease ABC, C subunit, putative n=18 Tax=c... 704 0.0 UniRef50_D1RJY2 Excinuclease ABC subunit C n=1 Tax=Legionella lo... 700 0.0 UniRef50_A9B4F8 Excinuclease ABC, C subunit n=1 Tax=Herpetosipho... 700 0.0 UniRef50_C6MYN0 Excinuclease ABC subunit n=1 Tax=Legionella dran... 699 0.0 UniRef50_Q5X1P5 UvrABC system protein C n=7 Tax=Gammaproteobacte... 699 0.0 UniRef50_D2RIL8 Excinuclease ABC, C subunit n=3 Tax=Veillonellac... 696 0.0 UniRef50_B6IZT9 UvrABC system protein C n=6 Tax=Coxiella burneti... 696 0.0 UniRef50_A5WBX3 UvrABC system protein C n=3 Tax=Psychrobacter Re... 696 0.0 UniRef50_A5EW70 UvrABC system protein C n=1 Tax=Dichelobacter no... 695 0.0 UniRef50_Q3IYX6 UvrABC system protein C n=23 Tax=Alphaproteobact... 693 0.0 UniRef50_B2I637 UvrABC system protein C n=15 Tax=Xanthomonadacea... 691 0.0 UniRef50_B5EPN1 Excinuclease ABC, C subunit n=2 Tax=Acidithiobac... 690 0.0 UniRef50_D1BLY6 Excinuclease ABC, C subunit n=5 Tax=Veillonellac... 687 0.0 UniRef50_B4RF25 UvrC, excinuclease ABC, C subunit n=1 Tax=Phenyl... 687 0.0 UniRef50_C9KP10 Excinuclease ABC subunit C n=1 Tax=Mitsuokella m... 686 0.0 UniRef50_A6BHR5 Putative uncharacterized protein n=1 Tax=Dorea l... 686 0.0 UniRef50_Q2RS75 UvrABC system protein C n=13 Tax=Alphaproteobact... 686 0.0 UniRef50_Q2G9G8 UvrABC system protein C n=2 Tax=Sphingomonadales... 685 0.0 UniRef50_A0L8U4 Excinuclease ABC subunit C n=1 Tax=Magnetococcus... 685 0.0 UniRef50_B2FK26 UvrABC system protein C n=29 Tax=Proteobacteria ... 685 0.0 UniRef50_Q47Z18 UvrABC system protein C n=274 Tax=Gammaproteobac... 685 0.0 UniRef50_A6SXR9 UvrABC system protein C n=19 Tax=Betaproteobacte... 683 0.0 UniRef50_A3DJ07 UvrABC system protein C n=15 Tax=Bacteria RepID=... 683 0.0 UniRef50_B8FHR2 UvrABC system protein C n=1 Tax=Desulfatibacillu... 681 0.0 UniRef50_Q21AW5 UvrABC system protein C n=89 Tax=Alphaproteobact... 680 0.0 UniRef50_B0VLX1 UvrABC system protein C n=17 Tax=Moraxellaceae R... 678 0.0 UniRef50_B7AWB5 Putative uncharacterized protein n=1 Tax=Bactero... 678 0.0 UniRef50_C6NXT8 Excinuclease ABC subunit C n=2 Tax=Gammaproteoba... 676 0.0 UniRef50_B0K791 UvrABC system protein C n=11 Tax=Thermoanaerobac... 675 0.0 UniRef50_Q0BPX7 UvrABC system protein C n=43 Tax=Alphaproteobact... 673 0.0 UniRef50_B9KY82 Excinuclease ABC, C subunit n=1 Tax=Thermomicrob... 670 0.0 UniRef50_C9LR57 Excinuclease ABC subunit C n=1 Tax=Dialister inv... 668 0.0 UniRef50_A0QWV6 UvrABC system protein C n=27 Tax=Actinomycetales... 668 0.0 UniRef50_Q1LKN9 UvrABC system protein C n=32 Tax=Proteobacteria ... 668 0.0 UniRef50_UPI000050F72E excinuclease ABC subunit C n=1 Tax=Brevib... 668 0.0 UniRef50_C0ZZE8 UvrABC system protein C n=14 Tax=Actinomycetales... 666 0.0 UniRef50_Q2JCI3 UvrABC system protein C n=12 Tax=Actinomycetales... 665 0.0 UniRef50_A9KSS0 UvrABC system protein C n=59 Tax=Firmicutes RepI... 665 0.0 UniRef50_Q3ZYA3 UvrABC system protein C n=5 Tax=Dehalococcoides ... 665 0.0 UniRef50_Q2NGT2 UvrABC system protein C n=4 Tax=Methanobacteriac... 662 0.0 UniRef50_Q180Q8 UvrABC system protein C n=8 Tax=Clostridiales Re... 662 0.0 UniRef50_Q12W02 UvrABC system protein C n=1 Tax=Methanococcoides... 661 0.0 UniRef50_C6E9G2 UvrABC system protein C n=3 Tax=Geobacter RepID=... 661 0.0 UniRef50_C5BV40 UvrABC system protein C n=16 Tax=Actinomycetales... 660 0.0 UniRef50_B8I8F2 UvrABC system protein C n=2 Tax=Clostridium RepI... 660 0.0 UniRef50_UPI00017881F9 excinuclease ABC, C subunit n=1 Tax=Geoba... 659 0.0 UniRef50_Q4JVI8 UvrABC system protein C n=8 Tax=Corynebacterium ... 659 0.0 UniRef50_B0S0L4 UvrABC system protein C n=2 Tax=Finegoldia magna... 659 0.0 UniRef50_D1CFI6 Excinuclease ABC, C subunit n=1 Tax=Thermobaculu... 657 0.0 UniRef50_Q6AKB8 UvrABC system protein C n=3 Tax=Deltaproteobacte... 657 0.0 UniRef50_Q1Q607 Similar to uvrABC system protein C (UvrC exinucl... 655 0.0 UniRef50_A0LHP7 Excinuclease ABC, C subunit n=1 Tax=Syntrophobac... 654 0.0 UniRef50_Q2LR71 UvrABC system protein C n=1 Tax=Syntrophus acidi... 653 0.0 UniRef50_C9R9D0 Excinuclease ABC, C subunit n=1 Tax=Ammonifex de... 651 0.0 UniRef50_B5E2L2 UvrABC system protein C n=268 Tax=Bacilli RepID=... 651 0.0 UniRef50_A9WT69 UvrABC system protein C n=2 Tax=Actinobacteria (... 651 0.0 UniRef50_Q3AFE5 UvrABC system protein C n=1 Tax=Carboxydothermus... 648 0.0 UniRef50_A5UY12 Excinuclease ABC subunit C n=5 Tax=Chloroflexace... 646 0.0 UniRef50_C1B4L2 UvrABC system protein C n=10 Tax=Actinomycetales... 646 0.0 UniRef50_B3QRR8 Excinuclease ABC, C subunit n=3 Tax=Bacteria Rep... 646 0.0 UniRef50_Q6MDC8 UvrABC system protein C n=1 Tax=Candidatus Proto... 646 0.0 UniRef50_A1BED8 UvrABC system protein C n=12 Tax=cellular organi... 646 0.0 UniRef50_C8QX27 Excinuclease ABC, C subunit n=1 Tax=Desulfurivib... 646 0.0 UniRef50_Q1AUH1 UvrABC system protein C n=1 Tax=Rubrobacter xyla... 645 0.0 UniRef50_C7HUD8 UvrABC system, C protein n=2 Tax=Anaerococcus Re... 645 0.0 UniRef50_Q4FPI1 UvrABC system protein C n=3 Tax=Candidatus Pelag... 645 0.0 UniRef50_D1BHL1 Excinuclease ABC subunit C n=16 Tax=Actinomyceta... 644 0.0 UniRef50_UPI0001C41B0D excinuclease ABC C subunit UvrC n=1 Tax=M... 643 0.0 UniRef50_C0QET6 UvrABC system protein C n=2 Tax=Desulfobacterace... 643 0.0 UniRef50_C1A8T0 UvrABC system protein C n=1 Tax=Gemmatimonas aur... 642 0.0 UniRef50_Q0B0A0 UvrABC system protein C n=1 Tax=Syntrophomonas w... 642 0.0 UniRef50_D1R706 Putative uncharacterized protein n=1 Tax=Parachl... 639 0.0 UniRef50_C1FMJ8 UvrABC system protein C n=14 Tax=Clostridium Rep... 639 0.0 UniRef50_C7RHW1 Excinuclease ABC, C subunit n=4 Tax=Clostridiale... 638 0.0 UniRef50_Q24WC0 UvrABC system protein C n=16 Tax=Firmicutes RepI... 638 0.0 UniRef50_A4XIQ3 UvrABC system protein C n=2 Tax=Clostridia RepID... 638 0.0 UniRef50_UPI0000E87CD9 excinuclease ABC, C subunit n=1 Tax=Methy... 638 0.0 UniRef50_A1AWP2 Excinuclease ABC subunit C n=1 Tax=Candidatus Ru... 638 0.0 UniRef50_B7K124 Excinuclease ABC, C subunit n=5 Tax=Cyanobacteri... 636 0.0 UniRef50_UPI00016BFB47 excinuclease ABC, C subunit n=1 Tax=Epulo... 635 e-180 UniRef50_A0Q5Q7 UvrABC system protein C n=18 Tax=Francisella Rep... 635 e-180 UniRef50_A8ZVJ2 Excinuclease ABC, C subunit n=1 Tax=Desulfococcu... 633 e-180 UniRef50_Q6MKS2 UvrABC system protein C n=1 Tax=Bdellovibrio bac... 632 e-179 UniRef50_A2RLW6 UvrABC system protein C n=11 Tax=Bacilli RepID=U... 631 e-179 UniRef50_Q03F33 UvrABC system protein C n=7 Tax=Firmicutes RepID... 631 e-179 UniRef50_Q01S04 UvrABC system protein C n=2 Tax=Acidobacteria Re... 629 e-179 UniRef50_B2A711 Excinuclease ABC, C subunit n=2 Tax=Firmicutes R... 629 e-179 UniRef50_A7HD93 UvrABC system protein C n=5 Tax=Bacteria RepID=U... 629 e-179 UniRef50_Q3M542 UvrABC system protein C n=11 Tax=Cyanobacteria R... 628 e-178 UniRef50_B2JFL2 Excinuclease ABC, C subunit n=2 Tax=Burkholderia... 627 e-178 UniRef50_A1WLD5 UvrABC system protein C n=17 Tax=Burkholderiales... 627 e-178 UniRef50_C7MCN8 Excinuclease ABC subunit C n=1 Tax=Brachybacteri... 626 e-178 UniRef50_Q1D921 UvrABC system protein C n=2 Tax=Cystobacterineae... 626 e-178 UniRef50_C7N5B1 Excinuclease ABC, C subunit n=6 Tax=Coriobacteri... 623 e-177 UniRef50_B6AR33 Excinuclease ABC, C subunit (UvrC) n=3 Tax=Lepto... 623 e-177 UniRef50_D0LVJ3 Excinuclease ABC, C subunit n=1 Tax=Haliangium o... 621 e-176 UniRef50_Q1IZB2 UvrABC system protein C n=4 Tax=Deinococcus RepI... 621 e-176 UniRef50_C8WI08 Excinuclease ABC, C subunit n=3 Tax=Coriobacteri... 620 e-176 UniRef50_B5YF86 UvrABC system protein C n=2 Tax=Dictyoglomus Rep... 619 e-175 UniRef50_B9M422 UvrABC system protein C n=8 Tax=Desulfuromonadal... 618 e-175 UniRef50_B0VH58 Excinuclease ABC, C subunit n=1 Tax=Candidatus C... 616 e-174 UniRef50_C6XFB9 Excinuclease ABC subunit C n=1 Tax=Candidatus Li... 614 e-174 UniRef50_C0GMH4 Excinuclease ABC, C subunit n=1 Tax=Desulfonatro... 613 e-174 UniRef50_B3EU62 Excinuclease ABC, C subunit n=2 Tax=Candidatus A... 613 e-174 UniRef50_C1F4W9 UvrABC system protein C n=1 Tax=Acidobacterium c... 611 e-173 UniRef50_D0RRP8 Excinuclease ABC subunit C n=1 Tax=alpha proteob... 609 e-172 UniRef50_B5YHU3 Excinuclease ABC, C subunit n=1 Tax=Thermodesulf... 606 e-172 UniRef50_A5FM03 UvrABC system protein C n=25 Tax=Bacteroidetes R... 606 e-172 UniRef50_B0SB16 UvrABC system protein C n=6 Tax=Leptospira RepID... 605 e-171 UniRef50_O26541 UvrABC system protein C n=1 Tax=Methanothermobac... 605 e-171 UniRef50_C8X3R4 Excinuclease ABC, C subunit n=1 Tax=Desulfohalob... 605 e-171 UniRef50_C4FUE0 Putative uncharacterized protein n=1 Tax=Catonel... 605 e-171 UniRef50_Q2S280 UvrABC system protein C n=1 Tax=Salinibacter rub... 604 e-171 UniRef50_Q6SI31 Excinuclease ABC, C subunit n=1 Tax=uncultured m... 602 e-170 UniRef50_Q1MQH2 UvrABC system protein C n=3 Tax=Desulfovibrionac... 602 e-170 UniRef50_A0M672 UvrABC system protein C n=7 Tax=Bacteroidetes Re... 601 e-170 UniRef50_D2ML33 Excinuclease ABC, C subunit n=1 Tax=Candidatus P... 599 e-170 UniRef50_A6NZD4 Putative uncharacterized protein n=1 Tax=Bactero... 597 e-169 UniRef50_A7VUD6 Putative uncharacterized protein n=4 Tax=Clostri... 596 e-168 UniRef50_C9RQJ8 Excinuclease ABC, C subunit n=1 Tax=Fibrobacter ... 595 e-168 UniRef50_C7H041 Excinuclease ABC subunit C n=1 Tax=Eubacterium s... 594 e-168 UniRef50_Q04EZ7 UvrABC system protein C n=42 Tax=Lactobacillales... 592 e-167 UniRef50_UPI0001C3237F excinuclease ABC, C subunit n=1 Tax=Conex... 592 e-167 UniRef50_B3WE47 UvrABC system protein C n=33 Tax=Bacilli RepID=U... 591 e-167 UniRef50_C7LTD0 Excinuclease ABC, C subunit n=2 Tax=Desulfovibri... 591 e-167 UniRef50_Q26GF0 Excinuclease ABC, C subunit n=5 Tax=cellular org... 588 e-166 UniRef50_Q0F271 Excinuclease ABC subunit C n=1 Tax=Mariprofundus... 588 e-166 UniRef50_B2RM62 UvrABC system protein C n=4 Tax=Bacteroidetes Re... 588 e-166 UniRef50_Q11YP9 UvrABC system protein C n=3 Tax=Bacteroidetes Re... 588 e-166 UniRef50_A1ZTX2 Excinuclease ABC, C subunit n=4 Tax=Bacteroidete... 586 e-166 UniRef50_B1CBT5 Putative uncharacterized protein n=1 Tax=Anaerof... 583 e-165 UniRef50_A8SNK4 Putative uncharacterized protein n=1 Tax=Parvimo... 583 e-165 UniRef50_Q5LIY7 UvrABC system protein C n=26 Tax=Bacteroidetes R... 581 e-164 UniRef50_Q5GSR4 UvrABC system protein C n=10 Tax=Wolbachia RepID... 579 e-163 UniRef50_D1PLG8 Excinuclease ABC subunit C n=3 Tax=Ruminococcace... 578 e-163 UniRef50_Q7V7L7 UvrABC system protein C n=43 Tax=Cyanobacteria R... 577 e-163 UniRef50_C6X0K5 Excinuclease ABC subunit C n=9 Tax=Bacteroidetes... 576 e-163 UniRef50_C3JAE7 Excinuclease ABC subunit C n=2 Tax=Bacteria RepI... 574 e-162 UniRef50_C0QWI5 Excinuclease ABC, C subunit n=2 Tax=Brachyspira ... 572 e-161 UniRef50_B0MPX2 Putative uncharacterized protein n=1 Tax=Eubacte... 572 e-161 UniRef50_A9NEZ8 Excinuclease ABC, subunit C n=1 Tax=Acholeplasma... 570 e-161 UniRef50_Q2GJJ1 UvrABC system protein C n=6 Tax=Anaplasma RepID=... 569 e-160 UniRef50_A4ECP7 Putative uncharacterized protein n=1 Tax=Collins... 563 e-159 UniRef50_C7N8N1 Excinuclease ABC, C subunit n=12 Tax=Fusobacteri... 563 e-159 UniRef50_C7LYI3 Excinuclease ABC, C subunit n=1 Tax=Acidimicrobi... 561 e-158 UniRef50_C2MAD2 Excinuclease ABC subunit C n=1 Tax=Porphyromonas... 561 e-158 UniRef50_D2MQ80 Excinuclease ABC, C subunit n=7 Tax=Bacteria Rep... 559 e-158 UniRef50_Q8REL0 UvrABC system protein C n=10 Tax=Bacteria RepID=... 558 e-157 UniRef50_A8GP33 UvrABC system protein C n=14 Tax=Rickettsia RepI... 557 e-157 UniRef50_D2RB48 Excinuclease ABC, C subunit n=1 Tax=Gardnerella ... 556 e-156 UniRef50_C5CDH0 Excinuclease ABC, C subunit n=1 Tax=Kosmotoga ol... 550 e-155 UniRef50_C5NYN4 Excinuclease ABC subunit C n=1 Tax=Gemella haemo... 547 e-154 UniRef50_Q2Z008 Exconuclease ABC subunit C (Fragment) n=1 Tax=un... 542 e-152 UniRef50_Q83NI9 UvrABC system protein C n=2 Tax=Tropheryma whipp... 540 e-152 UniRef50_C3XLG8 Excinuclease abc subunit c n=1 Tax=Helicobacter ... 535 e-150 UniRef50_C1SGC9 Excinuclease ABC, C subunit n=1 Tax=Denitrovibri... 535 e-150 UniRef50_Q2FPC6 UvrABC system protein C n=16 Tax=Archaea RepID=U... 535 e-150 UniRef50_A9BGW2 UvrABC system protein C n=1 Tax=Petrotoga mobili... 533 e-150 UniRef50_Q14NX3 Putative uvrc protein excinuclease abc subunit c... 530 e-149 UniRef50_Q8EWS6 UvrABC system protein C n=1 Tax=Mycoplasma penet... 529 e-148 UniRef50_D2RRA5 Excinuclease ABC, C subunit n=2 Tax=Halobacteria... 524 e-147 UniRef50_Q255T2 UvrABC system protein C n=17 Tax=Chlamydiaceae R... 524 e-147 UniRef50_C8P3R6 Excinuclease ABC, C subunit n=1 Tax=Erysipelothr... 522 e-146 UniRef50_D1AXF7 Excinuclease ABC, C subunit n=1 Tax=Streptobacil... 515 e-144 UniRef50_B9LUM9 UvrABC system protein C n=9 Tax=Halobacteriaceae... 515 e-144 UniRef50_A8F4P7 UvrABC system protein C n=6 Tax=Thermotogaceae R... 514 e-144 UniRef50_A5M6P1 Excinuclease ABC subunit C n=1 Tax=Streptococcus... 511 e-143 UniRef50_C0QPW8 Excinuclease ABC subunit C n=5 Tax=Aquificales R... 509 e-142 UniRef50_A4FBL9 UvrABC system protein C n=26 Tax=Actinomycetales... 507 e-142 UniRef50_Q72IF0 UvrABC system protein C n=5 Tax=Thermaceae RepID... 503 e-141 UniRef50_B7J223 UvrABC system protein C n=22 Tax=Borrelia RepID=... 500 e-140 UniRef50_UPI0001977D11 excinuclease ABC subunit C n=1 Tax=Helico... 495 e-138 UniRef50_A9A4M1 Excinuclease ABC, C subunit n=2 Tax=Thaumarchaeo... 492 e-137 UniRef50_A8ESX8 UvrABC system protein C n=26 Tax=Epsilonproteoba... 491 e-137 UniRef50_B1AJ20 UvrABC system protein C n=15 Tax=Ureaplasma RepI... 490 e-137 UniRef50_Q7NBC4 UvrABC system protein C n=1 Tax=Mycoplasma galli... 488 e-136 UniRef50_B9KC51 UvrABC system protein C n=1 Tax=Thermotoga neapo... 486 e-135 UniRef50_C2KQB5 Excinuclease ABC subunit C n=2 Tax=Mobiluncus mu... 485 e-135 UniRef50_B5Y9S9 Excinuclease ABC, C subunit n=1 Tax=Coprothermob... 477 e-133 UniRef50_Q2NJ78 UvrABC system protein C n=3 Tax=Candidatus Phyto... 473 e-132 UniRef50_Q7VK73 UvrABC system protein C n=2 Tax=Helicobacter Rep... 472 e-131 UniRef50_Q2SSM4 UvrABC system protein C n=5 Tax=Mollicutes RepID... 471 e-131 UniRef50_D2LI59 Excinuclease ABC, C subunit n=1 Tax=Rhodomicrobi... 470 e-131 UniRef50_A9EYQ9 Excinuclease ABC, subunit C n=1 Tax=Sorangium ce... 468 e-130 UniRef50_A7HJI0 UvrABC system protein C n=3 Tax=Thermotogaceae R... 463 e-129 UniRef50_D0WMS6 Excinuclease ABC subunit C n=1 Tax=Actinomyces s... 461 e-128 UniRef50_P47448 UvrABC system protein C n=2 Tax=Mycoplasma RepID... 452 e-125 UniRef50_A8FMV1 UvrABC system protein C n=22 Tax=Campylobacter R... 449 e-124 UniRef50_B4U9X0 UvrABC system protein C n=3 Tax=Aquificaceae Rep... 445 e-123 UniRef50_C3XEM6 Excinuclease ABC subunit C n=1 Tax=Helicobacter ... 443 e-122 UniRef50_B3DRV5 UvrABC system protein C n=18 Tax=Bifidobacterium... 441 e-122 UniRef50_Q6KH99 Excinuclease ABC nuclease subunit C n=2 Tax=Bact... 438 e-121 UniRef50_O84899 UvrABC system protein C n=13 Tax=Mycoplasma RepI... 403 e-110 UniRef50_Q4A6D1 Excinuclease ABC subunit C n=2 Tax=Mycoplasma sy... 377 e-103 UniRef50_Q98R54 EXCINUCLEASE ABC SUBUNIT C n=1 Tax=Mycoplasma pu... 375 e-102 UniRef50_B3PN41 Excinuclease ABC nuclease subunit C n=1 Tax=Myco... 374 e-102 UniRef50_D1J7M2 UvrABC system protein C (UvrC protein, Excinucle... 366 1e-99 UniRef50_B8DRE6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibri... 359 1e-97 UniRef50_Q313T1 UvrABC system protein C n=2 Tax=Desulfovibrio de... 359 2e-97 UniRef50_Q72DX8 UvrABC system protein C n=3 Tax=Desulfovibrio vu... 358 6e-97 UniRef50_Q0RH00 DNA excision repair enzyme UvrABC; UvrC subunit ... 356 1e-96 UniRef50_C1PCU9 Excinuclease ABC C subunit domain protein n=1 Ta... 356 2e-96 UniRef50_C5ADA8 UvrABC system protein C (Protein uvrC) n=4 Tax=P... 355 3e-96 UniRef50_A3NXK5 UvrABC system protein C n=59 Tax=Proteobacteria ... 353 1e-95 UniRef50_B8DGB7 UvrABC system protein C (Protein UvrC) (Excinucl... 347 5e-94 UniRef50_A0AGX5 Complete genome n=3 Tax=Listeria RepID=A0AGX5_LISW6 342 2e-92 UniRef50_D1VGT9 Excinuclease ABC, C subunit n=1 Tax=Frankia sp. ... 342 3e-92 UniRef50_C4XSA3 UvrABC system protein C n=1 Tax=Desulfovibrio ma... 339 2e-91 UniRef50_D1NSJ5 Excinuclease ABC subunit C n=3 Tax=Actinobacteri... 337 7e-91 UniRef50_D2L1M6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibri... 337 8e-91 UniRef50_B2S367 UvrABC system protein C n=4 Tax=Treponema RepID=... 321 5e-86 UniRef50_C2CW30 Excinuclease ABC subunit C n=1 Tax=Gardnerella v... 319 2e-85 UniRef50_A8GXA7 Excinuclease ABC subunit C n=2 Tax=Rickettsia be... 308 4e-82 UniRef50_C5J756 Excinuclease ABC subunit C n=1 Tax=Mycoplasma co... 298 3e-79 UniRef50_Q1NJF8 Helix-hairpin-helix motif (Fragment) n=1 Tax=del... 292 3e-77 UniRef50_B1ZNL0 Excinuclease ABC C subunit domain protein n=2 Ta... 289 2e-76 UniRef50_B9P7P3 Predicted protein n=3 Tax=cellular organisms Rep... 288 4e-76 UniRef50_A6DMD6 Excinuclease ABC subunit C n=1 Tax=Lentisphaera ... 287 9e-76 UniRef50_D1N623 Excinuclease ABC, C subunit n=1 Tax=Victivallis ... 287 1e-75 UniRef50_C9M9X8 Excinuclease ABC, C subunit n=1 Tax=Jonquetella ... 282 3e-74 UniRef50_B3E0M3 Excinuclease ABC subunit C n=1 Tax=Methylacidiph... 279 3e-73 UniRef50_A7BXI2 UvrABC system protein C n=1 Tax=Beggiatoa sp. PS... 278 6e-73 UniRef50_C0A483 Excinuclease ABC C subunit domain protein n=1 Ta... 275 3e-72 UniRef50_B8FTB6 Excinuclease ABC C subunit domain protein n=2 Ta... 274 6e-72 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 273 1e-71 UniRef50_D1Y7G8 Excinuclease ABC, C subunit n=1 Tax=Pyramidobact... 273 1e-71 UniRef50_A4CG28 Excinuclease ABC, C subunit (Fragment) n=1 Tax=P... 267 9e-70 UniRef50_Q601Y1 Excinuclease ABC subunit C n=4 Tax=Mycoplasma hy... 262 4e-68 UniRef50_A6M201 Excinuclease ABC, C subunit domain protein n=5 T... 261 6e-68 UniRef50_B2KBS4 Excinuclease ABC C subunit domain protein n=1 Ta... 260 9e-68 UniRef50_Q7UPD6 Excinuclease ABC subunit C n=5 Tax=Planctomyceta... 259 3e-67 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 257 7e-67 UniRef50_Q7NKN5 Excinuclease ABC subunit C n=1 Tax=Gloeobacter v... 257 1e-66 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 256 2e-66 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 255 2e-66 UniRef50_B9XGZ6 Excinuclease ABC C subunit domain protein n=2 Ta... 255 3e-66 UniRef50_D2R0D2 Excinuclease ABC C subunit domain protein n=1 Ta... 255 3e-66 UniRef50_B2URH7 Excinuclease ABC C subunit domain protein n=1 Ta... 254 5e-66 UniRef50_D1B5F2 Excinuclease ABC, C subunit n=2 Tax=Synergistace... 254 9e-66 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 254 1e-65 UniRef50_UPI0001788B47 Excinuclease ABC C subunit domain protein... 245 2e-63 UniRef50_C5RNQ3 Excinuclease ABC C subunit domain protein n=1 Ta... 245 3e-63 Sequences not found previously or not previously below threshold: >UniRef50_Q31GI3 UvrABC system protein C n=2 Tax=Bacteria RepID=UVRC_THICR Length = 613 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 294/611 (48%), Positives = 396/611 (64%), Gaps = 13/611 (2%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 QFD AFLK +T +PGVY MYDA G +IYVGKAK+LK+R+SSYF+ KTE LV+Q+ Sbjct: 8 QFDIDAFLKHLTERPGVYLMYDASGQIIYVGKAKNLKRRVSSYFKKRHEEIKTETLVSQV 67 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAK 122 I+VTVT TE+EAL+LE+ IK ++PRYN+L RDDKSYP+IF+ +G P L+ HRGAK Sbjct: 68 ASIEVTVTDTESEALILENTLIKRHKPRYNILFRDDKSYPYIFVSTGKKFPSLSYHRGAK 127 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 G YFGPFPN AV +TL LQKIFP+RQC SV+ +RSRPCLQYQI RC GPCVEGL Sbjct: 128 RKVGRYFGPFPNASAVHQTLHALQKIFPVRQCTESVFNHRSRPCLQYQIKRCSGPCVEGL 187 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+E EY + V++ FL GK V+ L +M+ AS EFE+AA RD+I A+R + + Sbjct: 188 VTEAEYNEDVQHTIAFLEGKSFDVIESLGHKMQQASDEFEFEKAALYRDKISALRAIQSQ 247 Query: 243 QFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT-ELSEVVETFV 300 ++ G D DV+ +A +A CV ++ R G + GS++YFPK+ G + E++ F+ Sbjct: 248 HLINQPGSKDTDVVALAEEANQVCVSIMMYRGGNLWGSQNYFPKIGGQSINPGEIISAFI 307 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q Y+ +P IL+ L DK+ L LSE K++++ +KLA T Sbjct: 308 TQHYIDL----PIPQMILVSDVLEDKSSLETWLSEQKKAKVSIRKAVSQTHKGLMKLALT 363 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 NA + L +L+Q+++ +R+ +L VL L MECFDISHT G QTVASCVVF+ Sbjct: 364 NAQSGLKQQLTQKASQAERVKSLQDVLALASPPNHMECFDISHTQGNQTVASCVVFNEGV 423 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 P + YR++NI GI PGDDYAAM+Q + RRY + + +PD+I+IDGGKGQL +A +V Sbjct: 424 PNTSAYRKFNIEGIQPGDDYAAMHQAITRRYSRVKKEGLPLPDLIVIDGGKGQLNKAIDV 483 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 F L++ ++ L+ VAKG RKAGLE L+ EG L D ALH++ +IRDE+H Sbjct: 484 FKTLEL----DNLPLVSVAKGEGRKAGLEILYTPFNEEGIDLEADDIALHLLNYIRDEAH 539 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR +R K + S LE I GVG K R LL + GGL ++NA+V E+ KVPGIS Sbjct: 540 RFAITSHRSRRQKAQTHSRLEDIPGVGAKTRHKLLTHFGGLTEVKNAAVSELQKVPGISA 599 Query: 599 GLAEKIFWSLK 609 +A+ I+ Sbjct: 600 RIAQTIYDFFH 610 >UniRef50_Q0A8X6 UvrABC system protein C n=19 Tax=Gammaproteobacteria RepID=UVRC_ALHEH Length = 611 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 306/614 (49%), Positives = 431/614 (70%), Gaps = 16/614 (2%) Query: 1 MSD---QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 M+D FD KAF++++T +PGVYRM D G V+YVGKA++LKKR++SYF + S + E Sbjct: 1 MTDVPSPFDPKAFVRSLTQRPGVYRMVDGRGEVLYVGKARNLKKRVASYFTRSRKSARIE 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLA 116 ++ Q+Q I VTVTHTE EAL+LE+ IK +PRYNVLLRDDKSYP+I+LS PRL+ Sbjct: 61 LMLTQVQDIQVTVTHTEAEALILENTLIKELRPRYNVLLRDDKSYPWIYLSSHQDFPRLS 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 HRGA+ G +FGPFP+G+AVRETL LQK+F IRQC++S + NRSRPCLQ+QI RC Sbjct: 121 FHRGARKGPGRWFGPFPSGHAVRETLNTLQKVFRIRQCQDSFFSNRSRPCLQHQIKRCTA 180 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PCV G +S E Y + V + LFL G+ +QV+ +L +RME AS+ LEFE AA+ RD+IQA+ Sbjct: 181 PCV-GYISREAYQEDVRHAVLFLEGRSNQVIEELGARMEAASERLEFEAAAQYRDRIQAL 239 Query: 237 RRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 + V E+Q++ DLDVI D ACV V F RQG+ LG++ ++P++P G + +EV+ Sbjct: 240 QAVQERQYIVGEKGDLDVIACVSDGVTACVTVFFFRQGRNLGNKVFYPRIPEGADEAEVL 299 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 F+ ++Y+ R P E+++ + ++ +L ++LS +G ++ V R +R R+L+ Sbjct: 300 AAFLARYYIG----RKAPPELVISHTIPEQKVLGEALSRESGHRVRVTHSVRKERRRWLE 355 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVF 415 +A TNA ALT++ S Q+ RL AL L+LP + R+ECFDISHT GE TVA+CVVF Sbjct: 356 MALTNARHALTARTSTQAMALHRLEALQDALQLPALPERIECFDISHTRGEATVAACVVF 415 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQ 474 + +GPL+++YRR+NI GITPGDDYAAM Q L RRY + + +PD++LIDGGKGQ+AQ Sbjct: 416 NQDGPLKSDYRRFNIRGITPGDDYAAMRQALSRRYQRLKKGEGVLPDILLIDGGKGQVAQ 475 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP-EGEGFSLPPDSPALHVIQHI 533 A+ V EL V + L+G+AKG +R+ G ETL +G +L PD+PAL ++Q + Sbjct: 476 AEAVLEELQV----DDVYLVGIAKGPERRPGEETLILSDEDGREKTLGPDAPALQLLQQV 531 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H AI GHR++R K + S+LE I G+GPKRRQ LL++ GGL+ + A VE++A+ Sbjct: 532 RDEAHRFAIAGHRQQRGKARTRSALEDIPGLGPKRRQALLRHFGGLKAVARAGVEDLART 591 Query: 594 PGISQGLAEKIFWS 607 PGIS+ LA+K++ Sbjct: 592 PGISRALAQKVYDH 605 >UniRef50_Q820N6 UvrABC system protein C n=2 Tax=Proteobacteria RepID=UVRC_NITEU Length = 604 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 316/614 (51%), Positives = 415/614 (67%), Gaps = 15/614 (2%) Query: 1 MSD-QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEAL 59 M D FD KAF+ T+ +QPGVYRM +A G VIYVGKA DL+KR+SSYF+ + S + + + Sbjct: 1 MPDAHFDGKAFVLTLPAQPGVYRMLNAAGDVIYVGKAIDLRKRVSSYFQKSGLSPRIQLM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V+QI I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+ PRLA +R Sbjct: 61 VSQIAGIETTVTRSEAEALLLENNLIKSLAPRYNILFRDDKSYPYLLLTRHIFPRLAFYR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 GA + +YFGPFPN V+ ++ LLQK+F +R CENSV+ +R+RPCL YQI RC GPCV Sbjct: 121 GALDDRHQYFGPFPNAGVVKSSIQLLQKVFRLRTCENSVFDHRTRPCLLYQIKRCSGPCV 180 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 GL++ E Y Q V+ +FL GK D+VL + +M TAS ++E+AA++RDQ+QA+R++ Sbjct: 181 -GLITPEAYQQDVKSAAMFLQGKQDEVLKTIEQKMFTASDQQDYEQAAQLRDQMQALRKI 239 Query: 240 TEKQFVSNTGD-DLDVIGVA--FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 EKQFV + D DVI A D+ V+++ IR G+ LG +++FP+ ++S V+ Sbjct: 240 QEKQFVDSGKALDADVIACAIEPDSHAVAVNLVMIRSGRHLGDKTFFPQNVYEADISTVL 299 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 E FV Q YL R++P I+L + TLL LS+ AG KI + T P G+R ++L Sbjct: 300 EAFVTQHYL----NRSVPPLIILGQKIR-VTLLQKLLSDQAGHKITLTTNPIGERRKWLD 354 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 +A NA AL L QQ++ RL AL L LP + R+ECFDISHTMGE T+ASCVV+D Sbjct: 355 MAAENAQLALQQMLIQQASQEDRLQALQEALNLPGLARIECFDISHTMGEATIASCVVYD 414 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVILIDGGKGQLAQA 475 EYRRYNITGI PGDDYAAM VL+RRY K A+++ K+PD+ILIDGGKGQ+ A Sbjct: 415 RFAMRNGEYRRYNITGIVPGDDYAAMRDVLQRRYAKLAMEEGKLPDLILIDGGKGQIRVA 474 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V EL + N L+GVAKG RK GLE L + E LP D PALH+IQ IRD Sbjct: 475 SEVMIELGL----NDIPLVGVAKGETRKPGLEQLILPWQEEALHLPDDHPALHLIQQIRD 530 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI GHR KRAK + S+LE I G+G KRRQ LL GGL+G++NAS+EE+ + G Sbjct: 531 EAHRFAIQGHRAKRAKTRKISTLEQISGIGTKRRQSLLTRFGGLKGVKNASIEELQQTEG 590 Query: 596 ISQGLAEKIFWSLK 609 IS+ LAEKI+ L+ Sbjct: 591 ISRSLAEKIYRELR 604 >UniRef50_C7RAS4 Excinuclease ABC, C subunit n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAS4_KANKD Length = 612 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 307/610 (50%), Positives = 420/610 (68%), Gaps = 10/610 (1%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 S + K L ++ +PGVY+M G +YVGKAK+L R+ SYF S KTE LV Sbjct: 10 STKPQIKKILAHLSHKPGVYQMLGKDGETLYVGKAKNLSNRVKSYFTRQYQSPKTELLVT 69 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 I+ I TVT TETEALLLE+N IK Y+PR+NVL RDDKSYP++FLS PRLA HRGA Sbjct: 70 YIEDIHTTVTETETEALLLENNLIKKYKPRFNVLFRDDKSYPYVFLSAGDFPRLAYHRGA 129 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K KG+YFGPFP+ AVR++L+L+QK F IRQCE+S + NRSRPCLQYQI RC PCV+ Sbjct: 130 KKEKGDYFGPFPSSSAVRQSLSLIQKTFQIRQCEDSYFANRSRPCLQYQIKRCTAPCVD- 188 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S+E+YA+ VE V+LF GK +QV+ +L +M+ ASQ L+FE AAR RDQI+ +R V + Sbjct: 189 YISKEDYAKDVENVKLFYQGKSEQVIKRLQKKMDVASQELDFELAARYRDQIKQMRHVMQ 248 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 +Q +S T DLDVIGVA+ +G+ C+ ++FIRQG ++G+++YFPKVP ++L E+V TF+G Sbjct: 249 QQVISGTASDLDVIGVAYASGVCCILLVFIRQGMIVGNKTYFPKVPKHSDLQEIVSTFLG 308 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 +YL G++ +P +++++ D L ++ E G K+ ++ RG + A N Sbjct: 309 FYYLSGAE---IPKQVVIESLPEDIEALQEAFGEQRGNKVTIRQASRGQVKEWQTFANKN 365 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 A +L +KL+ +S QRL L L++ + +ECFDISHT G+QTVASCVVFD NGP Sbjct: 366 AEHSLRAKLNSKSNFTQRLLDLQKALQMEHMPKHVECFDISHTQGQQTVASCVVFDENGP 425 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVF 479 +A+YR +NI+GIT GDDYAAM Q L RRY + D+ + +PD++++DGGKGQLA+A+ VF Sbjct: 426 KKADYRIFNISGITGGDDYAAMQQALTRRYKRLKDEQQALPDLVIVDGGKGQLAKAEEVF 485 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL++ L+GV+KG+DRK G+E ++F + + L DS A+H IQHIRDE+H Sbjct: 486 NELELKSS----YLIGVSKGSDRKVGMEQIWFPGQHQPLLLDDDSKAMHFIQHIRDEAHR 541 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR +R K S LE I GVG KRRQ LL++ GG Q + ASV++IA PG+S Sbjct: 542 FAITKHRHQRKKSATKSLLEEIPGVGAKRRQALLRHFGGWQEVEKASVKDIAGAPGVSMS 601 Query: 600 LAEKIFWSLK 609 LA+KI+ L Sbjct: 602 LAQKIYDYLH 611 >UniRef50_Q5F928 UvrABC system protein C n=29 Tax=Betaproteobacteria RepID=UVRC_NEIG1 Length = 617 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 295/622 (47%), Positives = 401/622 (64%), Gaps = 26/622 (4%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 +QFD FLK + PGVYR +D GG V+YVGKA +LK+R+S YF+ N S + +V Sbjct: 8 PEQFDIPLFLKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVK 67 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 Q++ I+ T+T +E EAL+LE+N+IK P+YN+L RDDKSYP++ LSG +P++A +RG Sbjct: 68 QVRHIETTITRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGT 127 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 +YFGP+PN AVR+++ +LQK+F +R CE+SV+ +R RPCL YQI RC PCV G Sbjct: 128 LKNPNQYFGPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCV-G 186 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +SEE+Y V FL+GK D++ L +M+TA+ NL+FEEAAR RDQIQA+ + Sbjct: 187 HISEEDYCDSVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQS 246 Query: 242 KQFVS----NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL--SEV 295 QF+ N +D+D++ +A G+ CVH + IR G+ +G +S+FP E + Sbjct: 247 NQFIDSKNPNNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDY 306 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 E FV Q YL S+ P I+ +F + D L ++L G+++ TK G+R +L Sbjct: 307 AEAFVAQHYLGKSK----PDIIISNFPVPDA--LKEALEGEHGKQMQFVTKTIGERKVWL 360 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKL--PEVKRMECFDISHTMGEQTVASCV 413 K+A NA A+T + QQS R+ LA +L + + R+ECFDISHT GE T+ASCV Sbjct: 361 KMAEQNAQMAITQRHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCV 420 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS------KIPDVILIDG 467 V+D ++YRRYNIT PGDDYAAM +VL RRYGK + K PDV+LIDG Sbjct: 421 VYDEQNIQPSQYRRYNITTAKPGDDYAAMREVLTRRYGKIQEAEANGESVKWPDVVLIDG 480 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQ+ A +V+ EL + H L+G+AKG +RKAG+E L GE F LPP+SPAL Sbjct: 481 GKGQIGVAVSVWEELGL-----HIPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPAL 535 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 H++Q +RDESH AI GHRKKR K + TSSL I GVG KRRQ LL GGL+G+ AS Sbjct: 536 HLLQTVRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASR 595 Query: 588 EEIAKVPGISQGLAEKIFWSLK 609 E++ KV GIS+ LAE I+ L Sbjct: 596 EDLEKVEGISKALAETIYNHLH 617 >UniRef50_B8CYK1 Excinuclease ABC, C subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYK1_HALOH Length = 607 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 222/614 (36%), Positives = 363/614 (59%), Gaps = 24/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + LK + +PGVY M D G VIYVGKAK L++R+ SYFR + KT+ +V I Sbjct: 4 IEEQLKRLPDRPGVYLMKDETGEVIYVGKAKSLRRRVRSYFRKGNHTFKTKIMVKHIADF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D VT TE EA +LE N IK Y P++N+ L+DDK+YP+I ++ + PR+ R K+ Sbjct: 64 DYIVTDTEVEAFILEANLIKKYNPKFNIRLKDDKTYPYIKVTVQEDFPRIFKTRLVKNDG 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGLV 183 YFGPF + A+ +T+ +L+ +F +R C+ ++ + RPCL Y IG+C+GPC+ G + Sbjct: 124 NRYFGPFTDVNAIYKTIDVLKDLFSLRTCKKNLEAGKPEKRPCLNYHIGKCVGPCI-GAI 182 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 Y + V+ V LFLSGK D+++ ++ M A++ FE+AAR RD ++A++ ++ +Q Sbjct: 183 DRNSYRELVDRVCLFLSGKQDELINEVEKEMYQAAEKKNFEKAARFRDAVRALKNISAQQ 242 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V ++ + + D+I + + G ACV VLFIR G+++G + + ++++ +F+ Q Sbjct: 243 KVMSSKNINQDIIALVEEEGEACVQVLFIRNGRLIGQEYFLMEGVDEESNTDIMVSFLQQ 302 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y Q + +P EI+++ ++S LL D L + G+K+ + +G++ R +++A NA Sbjct: 303 YYEQAPE---IPQEIVINTHVSQTELLEDWLQQKKGKKVKILIPLKGEKKRLVEMASKNA 359 Query: 363 ATALTSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 + L +L ++ QR L L L L +E FDIS+ G VAS VVF Sbjct: 360 SQNLKKELIRRKYQKQRNEKALDQLVEYLVLSSKPVHIEGFDISNIQGSDPVASMVVFKD 419 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAK 476 P +A+YRR+ I ++ +D+A M +V++RRY + +++ +PD+ILIDGGKGQL A Sbjct: 420 GVPSKADYRRFRIKTVSGPNDFAMMQEVVKRRYSRLLEEEGDLPDLILIDGGKGQLNAAL 479 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 V E+++ ++ + G+AK E +F + E +P SPALH++Q +RDE Sbjct: 480 EVLKEMNL----DYLDIAGLAKRE------EEVFLPGQKEPVIIPRKSPALHLLQRVRDE 529 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H A+ HRK R++ + L+ I GVGPKRR+ LL + G L +R A++ ++ +V GI Sbjct: 530 AHRFAVSYHRKLRSRRLTHTMLDEIPGVGPKRRKALLSHFGSLGAIRKATIGQLKEVDGI 589 Query: 597 SQGLAEKIFWSLKH 610 S A I+ L+ Sbjct: 590 SNKTARVIYDYLRE 603 >UniRef50_Q47EE8 UvrABC system protein C n=6 Tax=Proteobacteria RepID=UVRC_DECAR Length = 603 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 294/608 (48%), Positives = 401/608 (65%), Gaps = 10/608 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FDAKAFL T+T PGVYRM D GG V+YVGKAK+LKKR++SYFR NL+S + +V+QI Sbjct: 3 FDAKAFLATLTELPGVYRMLDIGGNVLYVGKAKNLKKRVASYFRENLSSPRIAHMVSQIA 62 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I+ T T TE EALLLE+N IK PRYN+L RDDKSYP+I LS PRL RG Sbjct: 63 SIETTATRTEAEALLLENNLIKSLAPRYNILFRDDKSYPYIVLSKGKFPRLGFFRGNPDR 122 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 K +YFGP+P+ +AVR+++ L+QK+F +R CE++V+ NRSRPCL YQI RC GPCV G +S Sbjct: 123 KADYFGPYPSSWAVRDSIHLMQKMFRLRTCEDTVFSNRSRPCLLYQIKRCSGPCV-GFIS 181 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 ++YA ++ +FL GK +V +L ME AS L FE+AA RDQIQ++ +V EKQF Sbjct: 182 ADDYAADIQLAAMFLLGKQQEVTRRLTKSMEEASAKLAFEQAAVFRDQIQSLHQVQEKQF 241 Query: 245 VSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 VS++ G+D+DV+ +AG CV++ +R G+ LG R +FP +E S+ F+ Q Sbjct: 242 VSSSKGEDVDVLVAIKEAGQLCVNLAMVRGGRHLGDRPFFPTNAADSEPSDACAAFIRQH 301 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y + L + + +T + +L+ELAGR + VQ ++++A NA Sbjct: 302 YAAHPAPARILSYPLPSEDEAGETEV--ALAELAGRPVPVQEGRGATHKAWVEMAIQNAR 359 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLR 422 A+ +K + QRL AL L+LPE + R+ECFDISHTMGE TVASCVV++ N + Sbjct: 360 LAILAKNQATAQQEQRLAALQDALQLPEPIARIECFDISHTMGEATVASCVVYEGNRMKK 419 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAE 481 ++YRR+NI I GDDYAAM Q + RRY + PD+ILIDGGKGQ++ A + A+ Sbjct: 420 SDYRRFNIRDIQAGDDYAAMRQAVSRRYDSIAGGEGTAPDLILIDGGKGQVSSAFSALAD 479 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L ++ H ++GVAKG +RK GLETL F E LPP PALH+IQ IRDE+H A Sbjct: 480 LGLT----HLPMIGVAKGEERKPGLETLIFPEGREPLQLPPQHPALHLIQEIRDEAHRFA 535 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I GHR +R K + TS LE++ G+GP RR+ L+ GGL G+ AS++++A+VPG+S+ +A Sbjct: 536 ITGHRAQRGKARKTSKLESLPGIGPARRKALVARFGGLPGVLAASIDQLAEVPGVSREMA 595 Query: 602 EKIFWSLK 609 EKI +L Sbjct: 596 EKIHSALH 603 >UniRef50_Q2SF17 UvrABC system protein C n=47 Tax=Proteobacteria RepID=UVRC_HAHCH Length = 612 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 294/611 (48%), Positives = 402/611 (65%), Gaps = 10/611 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FDAK+FLK +T++PGVYRM DA G V+YVGKA++LK R+SSYFR+ S KT ALV +I Sbjct: 7 FDAKSFLKQLTTRPGVYRMMDARGEVLYVGKARNLKNRVSSYFRNTGVSIKTRALVEKIA 66 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HRGA 121 I++T+TH+ETEALLLE N IK +P YN+LLRDDKSYP+I+LS D +P L R Sbjct: 67 DIEITITHSETEALLLEQNLIKTLKPPYNILLRDDKSYPYIYLSSHDEYPSLTFRRVRQK 126 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K KG +FGP+ + AVRE+LALLQKIF IRQCE+S + NRSRPCLQ+QIGRC PCV G Sbjct: 127 KTGKGRFFGPYTSAAAVRESLALLQKIFRIRQCEDSFFSNRSRPCLQHQIGRCSAPCV-G 185 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L+ + YA+ + + +FL G++ +++ + I +ME AS L+FE AA +RDQ+ +RRV E Sbjct: 186 LIDPQSYAEDMSHATMFLEGRNPEIINETIQQMEVASAQLDFERAAVLRDQVDYLRRVQE 245 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 +Q + D+D ++ + VH LFIR G+V+GS+S++ ++ +++ +F+ Sbjct: 246 QQAIEGVARDIDAFALSSSLELVVVHGLFIRAGRVVGSKSFYLSERLESDDGDLLSSFLN 305 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y + LP EI L+DK L + E+ R + ++ R +RA +L LA+TN Sbjct: 306 QYYFGEHAIYGLPQEITTTVGLTDKDALKAAFKEVFNRNVRIEHNVRSNRAEWLHLAQTN 365 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGP 420 A AL++++ Q QR + L L VKR+ECFD+SHT GE TVASCVVF G Sbjct: 366 ANQALSTRMQSQDAQLQRWQSFCDALNLEASVKRVECFDVSHTFGEATVASCVVFGPEGA 425 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVF 479 ++ YRRYNI + GDDY AM Q L RRY K D +PD+ILIDGGKGQL A VF Sbjct: 426 IKDLYRRYNIKDVPAGDDYHAMEQALTRRYSKLKDSDVGLPDIILIDGGKGQLGIAHQVF 485 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL ++ L+GVAKG RK G+ETLF + +LP DS ALH+IQ IRDE+H Sbjct: 486 DELQITG----VTLIGVAKGVTRKPGMETLFISADNSILNLPGDSTALHLIQQIRDEAHR 541 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI GHR +R K + S L+ + G+GPKRR+ LL Y G ++ + AS+EEI +VPGIS+ Sbjct: 542 FAITGHRNQRNKKRTQSVLDAVPGIGPKRRRDLLNYFGSVRNIERASLEEIKRVPGISEV 601 Query: 600 LAEKIFWSLKH 610 +A+ I+ + Sbjct: 602 IAQTIYAAFHE 612 >UniRef50_B6INU7 Excinuclease ABC, C subunit, putative n=18 Tax=cellular organisms RepID=B6INU7_RHOCS Length = 694 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 246/614 (40%), Positives = 360/614 (58%), Gaps = 20/614 (3%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 K +L+T+ +PGVYRM A G V+YVGKA++LK+R+++Y + + + +VA+ Sbjct: 88 TIKGYLRTLPDRPGVYRMLSAEGDVLYVGKARNLKRRVTNYTQVAKLPVRLQRMVAETVT 147 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHA 124 ++ THTE EALLLE N IK PRYNVLLRDDKS+P I ++GD P+L HRGA+ Sbjct: 148 MEFVTTHTEVEALLLESNLIKRLMPRYNVLLRDDKSFPHILITGDHPFPQLTKHRGARDR 207 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G Y+GPF + AV + LQ+ F IR C ++V+ +R+RPCLQ+QI RC PCV G V Sbjct: 208 AGSYYGPFASAGAVNRVMTALQRAFQIRTCTDTVFASRTRPCLQFQIKRCTAPCV-GRVG 266 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 + YA QV + FLSG+ +V +L M+ A++ LEFE AA++RD+I+A+ + Q Sbjct: 267 DAGYAAQVAEAKSFLSGRSSEVQARLARAMQDAAEALEFETAAKLRDRIRALTAIQAHQD 326 Query: 245 VSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 ++ G +D DVI D G+ C+ V F R G+ G+R+YFP + EV+ FV QF Sbjct: 327 INVEGVEDADVIAAHQDGGVTCIQVFFFRGGRNYGNRAYFPSHDKAQDTPEVLSAFVAQF 386 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y + + P +L+ +L + LL ++LS AG ++ + RGD+ R + A TNA Sbjct: 387 Y----ENKAAPELVLVSEDLPEHALLQEALSVRAGHRVALVAPKRGDKRRVVDHALTNAR 442 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLR 422 A +L++ + + L +A V L E R+E +D SH G V +V G L+ Sbjct: 443 EAHGRRLAESGSQAKLLAGVAEVFGLAEPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFLK 502 Query: 423 AEYRRYNITG-ITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQA 475 + YR++NI GDDYA M +VL RR+ +A+ + PD++LIDGG+GQLA A Sbjct: 503 SAYRKFNIKDPAAAGDDYAMMREVLTRRFERALKEDPERTGGTWPDLLLIDGGEGQLAVA 562 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V AEL + + L G+AKG DR AG E F F L P SP L+ +Q +RD Sbjct: 563 LEVLAELGI----DDVPLAGIAKGPDRDAGRERFFLPGRP-PFGLDPKSPVLYYLQRLRD 617 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR +R K S L+ I G+GP+R++ LL + G + + A ++++A V G Sbjct: 618 EAHRFAIGTHRARREKALGASPLDEIAGIGPRRKKALLHHFGSARAVSRAGLQDLASVEG 677 Query: 596 ISQGLAEKIFWSLK 609 IS+ +A I+ Sbjct: 678 ISEAVARIIYDHFH 691 >UniRef50_D1RJY2 Excinuclease ABC subunit C n=1 Tax=Legionella longbeachae D-4968 RepID=D1RJY2_LEGLO Length = 631 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 284/621 (45%), Positives = 387/621 (62%), Gaps = 19/621 (3%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+ + FL + ++PG+YRM D G V+YVGKA +LKKR++SYF KT +LV Sbjct: 12 MNISKELALFLAKLPNEPGIYRMLDESGAVLYVGKAANLKKRVTSYFNKQKTGIKTRSLV 71 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHR 119 QI I+++VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ +R Sbjct: 72 TQIASIEISVTRSETEALLLESNLIKTLKPKYNVLLRDDKSYPYIHLSNHPQFPRIESYR 131 Query: 120 GAKHA-KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 K G++FGP+P+ V+ET+ +QK+F IR C +S + RSRPCLQYQI RC PC Sbjct: 132 SKKKPVSGDFFGPYPSSGTVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPC 191 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 V +S E+Y + V+ FL GK +L +L RM+ A L FEEAA +RDQI+ +R Sbjct: 192 V-NYISPEDYKRSVQDAMRFLQGKCQLILDELAKRMDKAVSELNFEEAALLRDQIKCLRL 250 Query: 239 VTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE---- 294 V E+Q + D D I + + G ACV + IR G++L SRSYFP +P E Sbjct: 251 VQEQQGILQLQGDADAIAIEVNPGFACVQCVTIRDGQILSSRSYFPSLPQYGLDEELSME 310 Query: 295 -----VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 + F+G +YL S+ +P I+ + + ++ L ++LS+ G+ +Q PRG Sbjct: 311 TLWQQIFSAFIGFYYLDASEK--IPALIITNHPVDNQKTLQEALSQQRGKSCKLQVNPRG 368 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQT 408 + R++ A N ++ +++ ST+ R L L L E ++RMECFDISHT+GE T Sbjct: 369 VKLRWMDFALNNLRVSVAEYITKHSTMRSRFQELEKFLGLKEPIERMECFDISHTLGEAT 428 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGG 468 VASCVVF+ GP YRR+NI GITPGDDYAAM Q + RR+ + ++ +PDV++IDGG Sbjct: 429 VASCVVFEQEGPCPNLYRRFNIDGITPGDDYAAMEQAITRRFKRLVETQSLPDVLIIDGG 488 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQ+A A+ L++S +LLG+AKG RKAG E L + SLP DS ALH Sbjct: 489 KGQVAVAQKALLSLNIS----SVILLGIAKGPSRKAGWEKLILVHDSLELSLPDDSRALH 544 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 ++QHIRDE+H AI HRKKR K + S LE IEGVG KRRQ LL GG++ L A +E Sbjct: 545 LLQHIRDEAHRFAITAHRKKRQKKQMDSVLEDIEGVGRKRRQALLHRFGGIRELAKAPLE 604 Query: 589 EIAKVPGISQGLAEKIFWSLK 609 EIAKV GI++ LA++IF Sbjct: 605 EIAKVQGINEHLAKRIFQFFH 625 >UniRef50_A9B4F8 Excinuclease ABC, C subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4F8_HERA2 Length = 641 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 236/634 (37%), Positives = 344/634 (54%), Gaps = 41/634 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQI 66 + L+ + PGVY D T+IYVGK+K L+ R+ SYF + + KT LV I Sbjct: 16 EERLRNLPLSPGVYIYRDQANTIIYVGKSKSLRDRVRSYFGAPRGLTSKTRRLVQNIADF 75 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + T TE EALLLE N IK ++PRYNVLL+DDKSYP+I ++ + PR+ R G Sbjct: 76 EFITTDTELEALLLEMNLIKKHRPRYNVLLKDDKSYPYIKITKEAWPRVLRVRKVIEDGG 135 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRCLGPCVEGLV 183 YFGPF +V T+ LL K+F R C + +++ R+R C+ Y I RCLGPC Sbjct: 136 IYFGPFAKASSVYATIELLNKLFAFRLCNDDMFKKHERRNRACMYYDIKRCLGPCANN-C 194 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + EEY+ + VRLFL GK + +L L +M A+++L+FE AA +RDQI+AV RV E+Q Sbjct: 195 TTEEYSTAINQVRLFLGGKPEAILRDLKVKMNQAAEDLQFERAAYVRDQIKAVERVMERQ 254 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V NT D DVI A D G A V V +IR GK++GS + + ++ +F+ Q Sbjct: 255 KVLNTAASDQDVIAFARDEGKAVVQVFYIRGGKLIGSEPFTLQGTEEEHPEALMSSFLTQ 314 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 FY + +P ILL + ++ L G K+++Q RGD+ + LA NA Sbjct: 315 FYDAAAD---IPPNILLPDYPEETQIIEQWLESKGGHKVSLQVPRRGDKKDLVDLAARNA 371 Query: 363 ATALTSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 + L Q QR L+ L +L L E+ R+EC+DIS+T G +V S VVF+ Sbjct: 372 SQTLDQLRLQWLNAEQRATAGLSQLRELLNLAELPQRIECYDISNTQGTNSVGSMVVFEQ 431 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK------------------- 458 P + YRR+ I + +D A++++VL+RR+ +A D + Sbjct: 432 GEPAKKHYRRFKIKTVEGANDVASLSEVLQRRFARADDTGQTDEPESTEQTSAEPTNNDE 491 Query: 459 ----IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE 514 +PD+ILIDGG GQ+ A A H ++G+ KG + L + Sbjct: 492 TWAVLPDLILIDGGIGQVNAAAKTLAAAGF----EHIPVVGLVKGDTKGHLPYGLVKPGQ 547 Query: 515 GEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLK 574 + + P LH++Q I +E+H AI HRK R K S++E I G+GPKR++ L+ Sbjct: 548 RVPIAFAQNDPGLHLVQRIDEEAHRFAISYHRKLRTKGMLRSTMEDIPGIGPKRKKALIN 607 Query: 575 YMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G L+G+RNAS+EE+A VPG+++ AE+I L Sbjct: 608 AFGSLEGIRNASIEELAAVPGMTRKAAEEIKGLL 641 >UniRef50_C6MYN0 Excinuclease ABC subunit n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYN0_9GAMM Length = 620 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 288/617 (46%), Positives = 384/617 (62%), Gaps = 19/617 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + FL + ++PG+YRM D GTV+YVGKA +LKKR++SYF KT +LV+QI Sbjct: 8 LELTQFLAKLPNEPGIYRMLDQEGTVLYVGKAANLKKRVTSYFNKQNTGVKTRSLVSQIA 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKH 123 I+++VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ +R K Sbjct: 68 SIEISVTRSETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSEHPDFPRIESYRSKKK 127 Query: 124 A-KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 G +FGP+P+ AV+ET+ +QK+F IR C +S + RSRPCLQYQI RC PCV Sbjct: 128 PLAGNFFGPYPSVTAVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVH-Y 186 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 ++ +EY + V+ FL GK +L +L RME A NL FEEAA +RDQI+ +R V E+ Sbjct: 187 ITSDEYQRSVQDAMRFLQGKSQLILDELAKRMEEAVLNLNFEEAAMLRDQIKNLRLVQEQ 246 Query: 243 QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE-------- 294 Q + D D I + G ACV + IR+GK+L S+S+FP VP E Sbjct: 247 QGMMQLSGDADAIAIEVSPGFACVQCVTIREGKILASQSFFPSVPPNGLEEEPGLDDLWQ 306 Query: 295 -VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 + FV +YL + +P I+ D L L ++L++ G+ +Q PR ++R Sbjct: 307 QTFDAFVSFYYLGTPE--RIPPLIITDHALPTHQSLQEALTQQRGKSCKIQVSPRAAKSR 364 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASC 412 ++ A N A+ +++ ST+ R L L L + RMECFDISHT GE T+ASC Sbjct: 365 WMDFALNNLRVAIAEYVNKHSTMRSRFHELERFLALTKPIARMECFDISHTQGEATIASC 424 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 VVFD+ GP + YRR+NI GITPGDDYAAM Q + RR+ + ++ +PD+++IDGGKGQ+ Sbjct: 425 VVFDSEGPNPSAYRRFNIEGITPGDDYAAMEQAITRRFKRLVEAQSLPDILIIDGGKGQV 484 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A+ V A L+V+ LLGVAKG RKAG E L E +LP DS ALH++QH Sbjct: 485 TIAQRVLASLNVTT----VTLLGVAKGPSRKAGWEKLILVHEAREVTLPDDSKALHLLQH 540 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H AI HRKKR K + S+LE IEGVG KRRQ LL GGL+ L A +EEIAK Sbjct: 541 IRDEAHRFAITAHRKKRQKKRLESTLEDIEGVGAKRRQALLHRFGGLRELAKAPLEEIAK 600 Query: 593 VPGISQGLAEKIFWSLK 609 V GIS+ LA++IF Sbjct: 601 VQGISEHLAQRIFQHFH 617 >UniRef50_Q5X1P5 UvrABC system protein C n=7 Tax=Gammaproteobacteria RepID=UVRC_LEGPA Length = 618 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 298/624 (47%), Positives = 392/624 (62%), Gaps = 22/624 (3%) Query: 1 MSD---QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 M+D + FL + S+PG+YRM D GTV+YVGKA +LKKR++SYF KT Sbjct: 1 MNDLQLSAELALFLTKLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTR 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLA 116 ALV+QI+ I+++VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ Sbjct: 61 ALVSQIKSIEISVTRSETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIE 120 Query: 117 MHRGAKHAK-GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCL 175 ++R K G +FGP+P AVRET+ +QKIF IR C +S ++ RSRPCLQYQI RC Sbjct: 121 LYRSKKKPPSGNFFGPYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCT 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV +S E Y VE FL GK +L L RM+ A L FEEAA +RDQI+ Sbjct: 181 APCVH-YISPENYKLSVEDAIRFLQGKCQIILDALAERMKQAVNQLNFEEAAVLRDQIKN 239 Query: 236 VRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 +R + E+Q V D DVI + G AC+ + IR+G+VL S+S+FP VP E+ Sbjct: 240 LRLIQEQQGVVQLRGDADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEEL 299 Query: 296 ---------VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 E F+G +YL ++ +P I+ + ++++ L LS+ G+ +Q Sbjct: 300 DANSLWQQTFEAFIGFYYLDTTE--RIPDLIITNQSITESRSLEYILSQRRGKSCKIQVN 357 Query: 347 PRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMG 405 PRG ++R++ A N ++ +S+ ST+ R AL +L L + ++RMECFDISHT G Sbjct: 358 PRGVKSRWMDFAVNNLRISVAEYVSKHSTIRSRYQALKQLLALDKNIERMECFDISHTQG 417 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILI 465 E TVASCVVFD GP +EYRR+NI GITPGDDYAAM Q + RR+ + ID +PDV++I Sbjct: 418 EATVASCVVFDTEGPRPSEYRRFNIEGITPGDDYAAMEQAVTRRFKRLIDAQLLPDVLII 477 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGGKGQ++ K V L V LLGV+KG RKAG E L E F LP DS Sbjct: 478 DGGKGQVSIVKRVLTSLGV----EDITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSK 533 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 ALH++QHIRDE+H AI HRKKR K + S+LE+IEGVG KRRQ LL+ GGL+ L A Sbjct: 534 ALHLLQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKA 593 Query: 586 SVEEIAKVPGISQGLAEKIFWSLK 609 +EEI KV GIS+ LA++I Sbjct: 594 PLEEICKVQGISEQLAKRIHEHFH 617 >UniRef50_D2RIL8 Excinuclease ABC, C subunit n=3 Tax=Veillonellaceae RepID=D2RIL8_ACIFE Length = 618 Score = 696 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 251/619 (40%), Positives = 350/619 (56%), Gaps = 30/619 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M+D K L + + PGVY M+DA G VIYVGKA LK R+ SYFR S K A+ Sbjct: 1 MNDA--IKETLAVLPNAPGVYIMHDASGKVIYVGKAVILKNRVRSYFRPASQVSPKVRAI 58 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 A + I+ VT +E EAL+LE N IK Y+PRYN+ L+DDK+YP++ ++ G+ +PR+ + Sbjct: 59 NAHVASIETIVTASEMEALILECNLIKKYRPRYNIDLKDDKTYPYLKITVGEAYPRMVLT 118 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R Y+GPF + A+R+T+ L++ +FP+R C N N RPCLQY + RCL PC Sbjct: 119 RRVLKDGARYYGPFADAGALRDTMKLIRTMFPLRHCRN---LNAKRPCLQYHLHRCLAPC 175 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G V EY Q V+ V L L GK Q+ L ++M+ AS NLEFE AAR RD + ++R+ Sbjct: 176 T-GKVPVSEYRQMVDAVLLLLDGKVTQLEKDLTAKMQQASDNLEFEAAARYRDSLLSLRK 234 Query: 239 VTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 + EKQ + D DV+G+A D CV V FIR GK+LG S+F G EV+ Sbjct: 235 LAEKQKATTESGDRDVVGLAMDDSGVCVQVFFIRSGKILGRDSFFLDQEIGEPDGEVLGD 294 Query: 299 FVGQFYLQGSQMRTLPGEILLDFN--LSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 F+ Q+Y + + P EIL+ SD+TLL LS L + +N+ RG + + Sbjct: 295 FLKQYYHENHR---PPREILVSAELADSDRTLLGQWLSSLCEKPVNLLVPQRGLKHDLVL 351 Query: 357 LARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVAS 411 +A NA L +L + T L L L + +RM+CFDISH G +TVAS Sbjct: 352 MAVNNAKKNLEERLRRGHASGQTGLDAAEQLQKALGLAKPLERMDCFDISHNQGRETVAS 411 Query: 412 CVVFDANGPLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKG 470 VVF P + +YRRY + DD+ +M +V+ RRY D +P +I+IDGGKG Sbjct: 412 MVVFRDGVPSKKDYRRYKLRSTEGKPDDFKSMQEVVYRRYRDLED---LPSLIIIDGGKG 468 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 QL+ A V L ++ ++G+AK E +F E L SPALH+I Sbjct: 469 QLSSACEVIRGLGIT--PEEVPVIGLAKRE------EEIFKEGAHTSILLDKMSPALHLI 520 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 QHIRDE+H AI HRK+ K S L+ +EG+GPKRR L K G L +R ASVE++ Sbjct: 521 QHIRDEAHRFAITYHRKRLGKRNLVSVLDHLEGLGPKRRAALWKRFGSLDAMRQASVEDL 580 Query: 591 AKVPGISQGLAEKIFWSLK 609 A V +++ +AE++ L+ Sbjct: 581 AAVDTMNRTVAERVHTFLQ 599 >UniRef50_B6IZT9 UvrABC system protein C n=6 Tax=Coxiella burnetii RepID=UVRC_COXB2 Length = 609 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 305/608 (50%), Positives = 412/608 (67%), Gaps = 9/608 (1%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + AFLKT+ + GVY+M DA G VIYVGKA++L+KR+SSYFR L S KT+A++AQ+Q Sbjct: 5 NPSAFLKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQS 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHA 124 I T+T E EALLLE ++IK ++PRYNVLLRDDKSYP+++L + PRL +RGAK A Sbjct: 64 IQTTITRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKA 123 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G YFGP+PN +VRE LAL+QK+F +RQC S ++NR+RPCLQYQI RC PCV G V+ Sbjct: 124 PGRYFGPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCV-GYVN 182 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E+EY +QVE LF GK+DQV+ +L RME AS+NL FEEAA RDQI+ +RR+ ++Q Sbjct: 183 EQEYRRQVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQI 242 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 ++ ++D+IG+A G +LFIR G+++G + +FP P GT L + F+ Q+Y Sbjct: 243 ITGGKGNIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYY 302 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 L + +P I+ L D+ + +LS RK+ + + R ++ +A NAA Sbjct: 303 LSPLRNGDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQ 362 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL+ L+Q++T +L A+ L LP + R+ECFDISHT+GE TVASCVVF GP++ Sbjct: 363 ALSQHLAQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKK 422 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAEL 482 +YRR+NI+G+TPGDDY A+ Q L RRY + + + +PDV+LIDGG GQL QA V EL Sbjct: 423 DYRRFNISGVTPGDDYGALRQALTRRYVRLKEGEGILPDVLLIDGGMGQLRQAAEVLEEL 482 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 VS +L +AKG RKAGLE LF E LP D+ A H+IQ IRDE+H AI Sbjct: 483 QVSG----VILTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRDEAHRFAI 538 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 H +RAK + S+L+ IEG+GPKRRQ LLKY GGLQ L+ AS+EEIA+VPG+S+ LA+ Sbjct: 539 TAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAK 598 Query: 603 KIFWSLKH 610 I+ Sbjct: 599 AIYDDCHQ 606 >UniRef50_A5WBX3 UvrABC system protein C n=3 Tax=Psychrobacter RepID=UVRC_PSYWF Length = 614 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 297/613 (48%), Positives = 392/613 (63%), Gaps = 16/613 (2%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 Q K +K + + PGVY+M G ++YVGKAK LK R++SYF + KT ALV++ Sbjct: 13 KQARLKHLIKRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVSR 72 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRG- 120 I I+ +T +ETEALLLE N IK ++P YNVLLRDDKSY ++F+S D +PRLA RG Sbjct: 73 IHDIETIITRSETEALLLEQNLIKEHRPPYNVLLRDDKSYLYVFISADQPYPRLAYGRGK 132 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 AKH KG++FGPFP+ +A +ETL L+QK+F +RQC N+ +R R RPCL+YQI RC PCV Sbjct: 133 AKHQKGKFFGPFPSAHAAKETLVLMQKMFQMRQCTNTFFRQRKRPCLEYQIKRCRAPCV- 191 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GLVS EEYA V+ FL G + T LI +ME +++ L+FE+AA RDQ+ +R V Sbjct: 192 GLVSAEEYAADVQNTIRFLKGDSSDIHTTLIEKMEHSAEALDFEKAAFYRDQLSMLREVQ 251 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q V + D+I +A AGM CV+VL +R G+VLG ++YFP V +++ + F+ Sbjct: 252 SRQAVYTVQGEADIISIASQAGMTCVNVLTVRGGRVLGGKNYFPDVDSNEPINDNLSAFI 311 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 FY Q + LP EI++ L D+ L ++LS K ++T R RA +L LA+ Sbjct: 312 TSFYFQVTD--DLPAEIIISHELPDQMALQEALSTYFEAKTVIKTNVREHRAEWLDLAKL 369 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLK---LPEVKRMECFDISHTMGEQTVASCVVFDA 417 NA AL +KL +H R AL VL+ + +ECFDISHTMGE T+ASCVVFD Sbjct: 370 NAHNALKTKLGDYLELHARFAALKEVLEPVSQSSIDTIECFDISHTMGEATIASCVVFDQ 429 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 G + +YR+Y I G+ GDDYAAM Q + RRY K +PDV+LIDGGKGQL+ AKN Sbjct: 430 GGARKRDYRQYAIHGVQDGDDYAAMAQAITRRYKK----HPLPDVLLIDGGKGQLSMAKN 485 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V EL + N LL+GVAKG RKAGLE L F E E LP DS ALH+I +IRDE+ Sbjct: 486 VLTELGL---LNDTLLIGVAKGEGRKAGLEVLHFI-EHEPLDLPMDSKALHLIMNIRDEA 541 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRKKR K +++S LE I G+G KRR+ LL + GGLQ L AS +E+ V GI Sbjct: 542 HRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRDLLNHFGGLQQLLGASQQELEGVNGIG 601 Query: 598 QGLAEKIFWSLKH 610 + +A I+ L Sbjct: 602 KVMANTIYKVLHE 614 >UniRef50_A5EW70 UvrABC system protein C n=1 Tax=Dichelobacter nodosus VCS1703A RepID=UVRC_DICNV Length = 607 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 282/608 (46%), Positives = 389/608 (63%), Gaps = 12/608 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD FL V++ GVY+M D GTV+YVGKAK+L++RLS YF+ S KT AL+ + Sbjct: 8 FDPDVFLSHVSTLSGVYQMRDQNGTVLYVGKAKNLRQRLSHYFQKTGLSVKTRALMRAVY 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I T T TE EALLLE+N IK YQP++N+LLRDDKSYP+I LS PRL ++RGA+ Sbjct: 68 DIQTTSTPTEAEALLLENNLIKQYQPKFNILLRDDKSYPYICLSQHDFPRLFLYRGARK- 126 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G++FGP+PN + LA+LQK+F +R C +S ++NRSRPCLQYQI RC PCV G +S Sbjct: 127 NGDFFGPYPNVQSAHHALAILQKVFRLRPCLDSFFKNRSRPCLQYQIKRCYAPCV-GKIS 185 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E YAQ V++ R FL+G + +L L M AS ++E AA +RDQI +R + +KQ Sbjct: 186 AEMYAQTVQHARDFLTGNSEHLLQTLTEHMLQASAAQQYERAAIVRDQISELRTIQQKQS 245 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + ++DV+ VA G ACV VLF R G + S+++FPK+P +++ F+GQFY Sbjct: 246 MVVYAANVDVLAVATAYGKACVQVLFFRDGHSVTSQAFFPKLPELLPAGAILQAFIGQFY 305 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 Q R +P +I+L L D +++ LS+++ + + T+PR R ++L++ + NA Sbjct: 306 HQ----RPVPSQIVLSEALPDMDAVSEFLSQMSAHTVTLTTQPRAIRKKWLRMTQENARL 361 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 L L+Q+ ++H+R ALA ++ R+EC DISH GE TVASCVVFD G +++ Sbjct: 362 NLRLHLAQKLSMHERFKALAQAFDWQKMPQRLECVDISHMQGEYTVASCVVFDRRGAVKS 421 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAEL 482 +YRRY I GIT GDDYAAM QV++RR+ + + +PDV +DGG+GQL QA VF E+ Sbjct: 422 DYRRYKINGITGGDDYAAMKQVIKRRFARLKKGEGVMPDVFFVDGGRGQLQQAIAVFEEM 481 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 + L+GVAKG RKAGLE +F E +LP DS A+ +I HIRDE+H AI Sbjct: 482 QIEG----VQLIGVAKGEGRKAGLEQFWFPHENRPRTLPADSQAMQLIIHIRDEAHRFAI 537 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HR+ R K S LE I +G KRRQ LL++ G L GL AS E+I +VPGIS LA Sbjct: 538 SAHRRGRDKKVRVSLLEEIPNIGRKRRQALLQHFGNLAGLMQASPEDITRVPGISVKLAA 597 Query: 603 KIFWSLKH 610 +I+ +L Sbjct: 598 QIYAALHQ 605 >UniRef50_Q3IYX6 UvrABC system protein C n=23 Tax=Alphaproteobacteria RepID=UVRC_RHOS4 Length = 623 Score = 693 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 239/614 (38%), Positives = 353/614 (57%), Gaps = 21/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + +LKT+ PGVYRM DA V+YVGKA++L+ R+S+Y R + S + ++ + + Sbjct: 18 IQGYLKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASM 77 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 T TETEALLLE N IK +PRYNVLLRDDKS+P I ++ D P L HRG K K Sbjct: 78 MFLTTRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEK 137 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGPF + AV TL LQ++F +R C ++ + +R+RPCL +QI RC PCV G V Sbjct: 138 GSYFGPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCV-GRVPA 196 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+YA+ + FL G+ +V L +M+ AS+ +EFE AA +RD+I+A+ +V Q + Sbjct: 197 EDYAELIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGI 256 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + G + DVI V + G ACV V FIR + G+R +FP+ G E E++E F+ QFY Sbjct: 257 NPRGVAEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFY 316 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + P ILL + + L+ LSE AGRK+ + RG++A ++ A NA Sbjct: 317 DD----KEPPRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARE 372 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L ++++ +T ++ L LA +L R+E +D SH G V +V G L++ Sbjct: 373 SLARRMAESATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKS 432 Query: 424 EYRRYNITGITP--GDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQA 475 +YR++NI G GDD+ M +VL RR+ + + + PD++LIDGG GQ++ Sbjct: 433 QYRKFNIRGAAGAQGDDFGMMKEVLTRRFERLLKEDPERKTDAWPDLLLIDGGAGQVSAV 492 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + + EL V + +GVAKG DR AG E E F+L + P L+ +Q +RD Sbjct: 493 QEILQELGV----DDVPFIGVAKGIDRDAGKEEFHRPGEP-PFALRMNDPVLYFVQRLRD 547 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR KRAK + + L+ I GVG R++ LL + G + + A V ++ V G Sbjct: 548 EAHRWAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEG 607 Query: 596 ISQGLAEKIFWSLK 609 IS+ +A+ I Sbjct: 608 ISETMAQSIHDYFH 621 >UniRef50_B2I637 UvrABC system protein C n=15 Tax=Xanthomonadaceae RepID=UVRC_XYLF2 Length = 621 Score = 691 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 304/617 (49%), Positives = 409/617 (66%), Gaps = 18/617 (2%) Query: 1 MSDQ----FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKT 56 M+D FD K F +++ PGVYRMY A T++YVGKA L+KR++SYF + + Sbjct: 1 MTDNAPITFDGKRFAAHLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRL 60 Query: 57 EALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLA 116 A++AQ+ ++DVT+T E EALLLE+ IK PRYNVLLRDDKSYP++ L+ + PR+A Sbjct: 61 TAMLAQVVRMDVTITRNEAEALLLENQLIKSLTPRYNVLLRDDKSYPYVLLTREAWPRIA 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 +HRG + G YFGP+P AVR+ L L+ K+F +R CE+SV+RNRSRPCLQYQIGRC Sbjct: 121 LHRGPQIVPGRYFGPYPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSA 180 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PCV +V+ + Y + V V LFL GK D + +LI M+ AS++LEFE+AAR+RD + ++ Sbjct: 181 PCV-NVVTHDNYTEAVHRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSL 239 Query: 237 RRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 R + +Q+V DLDV+ A +G ACV +L R G+ LG+R +FPK G +E++ Sbjct: 240 RSMQNRQYVDGRAADLDVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEIL 299 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 FV Q+Y + P EILLD + D TLL + S + KI+++ RG+RA Y++ Sbjct: 300 SAFVSQYYAEY----PPPPEILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVE 355 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVF 415 LA NA AL+++L+ Q R A+ +L L +KR+ECFDISHTMGE TVASCVVF Sbjct: 356 LAVRNAQVALSTELTSQRAQRVRSEAVRQLLGLEGPIKRVECFDISHTMGEATVASCVVF 415 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI---PDVILIDGGKGQL 472 DA GP+R++YRRYNITGITPGDDYAAM Q + RR+ +A+++ K PDV+ IDGG GQL Sbjct: 416 DAVGPVRSQYRRYNITGITPGDDYAAMRQAIERRFRRAVEEDKQGERPDVLFIDGGAGQL 475 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 AQAK + V LL+GV+KG +R+AG ETL +G+ SPAL IQ Sbjct: 476 AQAKMALNAVGV----ESVLLVGVSKGEERRAGHETLIM-LDGQELHPGAASPALQFIQQ 530 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI GHR +R K + TS LE I G+G +RR LLK+ GGL G++ A EIA+ Sbjct: 531 VRDEAHRFAITGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIAR 590 Query: 593 VPGISQGLAEKIFWSLK 609 V GIS LA KI+ SL Sbjct: 591 VEGISTALAAKIYASLH 607 >UniRef50_B5EPN1 Excinuclease ABC, C subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPN1_ACIF5 Length = 623 Score = 690 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 277/609 (45%), Positives = 391/609 (64%), Gaps = 13/609 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F FL+T+TSQPG+Y+M+ G ++YVGKA++L++R+SSYF+ + KT A++AQ+ Sbjct: 20 FVPGEFLRTLTSQPGIYQMFGQGSRLLYVGKARNLRRRVSSYFQKQRHTPKTLAMLAQVT 79 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKH 123 +++V VTHTETEAL+LE N IK + P YN+LLRDDKSYP++F+ +G PR+++HRGA+ Sbjct: 80 RVEVVVTHTETEALVLEANLIKRHHPPYNILLRDDKSYPYLFIETGHGTPRMSLHRGAQK 139 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 KG YFGP+P A+RE++ LLQK F +R CE+ + +RSR CLQ+QI RC GPCV G + Sbjct: 140 GKGHYFGPYPAVTALRESMVLLQKAFRLRTCEDHTFHHRSRACLQFQIRRCSGPCV-GHI 198 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S E+YA+ V FL GK D+ + L RM+ A++ L+FEEAAR RDQI A+ ++ E+Q Sbjct: 199 SGEDYARDVADTIRFLEGKSDEAIRSLGERMQAAAEQLDFEEAARRRDQIAALSKIQERQ 258 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 +V+ G D DV+ A + G V+V FIR G+ LG RS FP+ +V+ F+ Q Sbjct: 259 YVAQAGGGDFDVLAAAQENGQWVVYVSFIRNGRQLGGRSVFPRHTEEVRAPDVLAAFLMQ 318 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 FY + +PG +L++ T LA++L AG ++ + RG R R++ LA TNA Sbjct: 319 FYSD----KEVPGNLLVNVLPRSPTSLAEALGSEAGHRVMIDQPQRGPRKRWMALALTNA 374 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPL 421 AL + +R+ L + +LPE+ R+ECFDISHT GE VASCVVF +G L Sbjct: 375 MGALRQRTQTAGAGRRRMLLLQELFQLPEIPQRVECFDISHTRGEVAVASCVVFGDDGAL 434 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA 480 + EYRR+NI I GDDYAAM Q + RRYG+ + +P+++ IDGG GQ+A+A+ Sbjct: 435 KNEYRRFNIRDIRGGDDYAAMEQAVHRRYGRLQKEGLALPEIVFIDGGAGQVARAQAALD 494 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L++ L GVAKG R+ GLE L L D PAL VIQ IRDE+H Sbjct: 495 ALEIGC----IQLCGVAKGTTRRPGLEMLHIPGWAVPRQLDDDDPALLVIQEIRDEAHRF 550 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI GHR +R K + S L+ I G+GPKRR LL+ GGL+G+R+A +E++ +V GI L Sbjct: 551 AITGHRARRGKARQESDLDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLEL 610 Query: 601 AEKIFWSLK 609 A++I+ Sbjct: 611 AQRIYDFFH 619 >UniRef50_D1BLY6 Excinuclease ABC, C subunit n=5 Tax=Veillonellaceae RepID=D1BLY6_VEIPT Length = 608 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 218/609 (35%), Positives = 347/609 (56%), Gaps = 27/609 (4%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQIQQID 67 + + + PGVY D +IYVGKA +L+ R+ SY R++ K A++ + ++ Sbjct: 8 EKVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVE 67 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V T TE EAL+LE+ IK ++P+YN+ LRDDK+YP++ +S + +PR+ M R + Sbjct: 68 VIQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGA 127 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +YFGPF + +V L L+++ +P+R C++ RPCLQY + C PC +S Sbjct: 128 KYFGPFTDVTSVHVVLKLIRQYYPLRTCKSM---KVERPCLQYHMHYCEAPCF-NKISVP 183 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +Y + ++ + GK +L ++ S+ME A+++L FE+AAR RDQ+ ++ ++ EKQ + Sbjct: 184 DYRKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMV 243 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 DLDV+G+A D MACV +LFIR G++LG +YF + G + ++ F+ Q+Y Sbjct: 244 TQRGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSS-ETIMTDFIKQYYGD 302 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 +P E+LL +D+ LL + ++L G+ ++V RG + +K+A NA T L Sbjct: 303 ---TNFIPKELLLPMESTDRDLLTEWFTQLKGQHVDVSVPQRGYKMDMIKMAHENAETFL 359 Query: 367 TSKLSQQSTVHQRL----TALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPL 421 + Q + LA +L LP + RMECFDISHT G +TVAS VVF+ P Sbjct: 360 EERRRQWQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGAETVASMVVFEGGKPA 419 Query: 422 RAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + EYRR+ + DD+ +M +++ RRYG D +PD+I+IDGGKGQL A + Sbjct: 420 KKEYRRFKLKTTQGKPDDFKSMAEIMERRYGNETDW-PMPDLIIIDGGKGQLNAALPLIR 478 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + V+ ++ +AK +E +F E + E L +P L ++Q IRDE+H Sbjct: 479 AVGVT----DVPVISLAK------RIEEVFVEGQSESIILSHHTPELQLLQQIRDEAHRF 528 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HRK R K S L+ IEG+GPKRR+ L + L+ ++ AS++E+A V ++ Sbjct: 529 AITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELANVESMNYKT 588 Query: 601 AEKIFWSLK 609 AE ++ + Sbjct: 589 AETLYNFFR 597 >UniRef50_B4RF25 UvrC, excinuclease ABC, C subunit n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RF25_PHEZH Length = 662 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 246/614 (40%), Positives = 367/614 (59%), Gaps = 21/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K ++ + +PGVYRM G V+YVGKA+ LKKR+ Y + +++ +V + + Sbjct: 57 IKDEVRRLPDRPGVYRMIGEDGEVLYVGKARSLKKRVLQYAQGRFHTQRIAHMVDLTRAM 116 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 + T TET+ALLLE N IK +PR+NVLLRDDKS+P I + D P+L HRGA K Sbjct: 117 EFVTTRTETDALLLEINLIKQLKPRFNVLLRDDKSFPEIVIRRDHAAPQLRKHRGAHSIK 176 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G+YFGPF + +AV TL LQK F +R C +SVY R+RPC+ +QI RC PC GL+S Sbjct: 177 GDYFGPFASAWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIRRCSAPCT-GLISL 235 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y V+ FL GK V+ ++ M+ A+++LEFE AAR+RD+I+A+ V ++Q + Sbjct: 236 EDYNALVDEAGAFLRGKSRAVMERMAGEMQAAAEDLEFERAARLRDRIRALASVAQEQQI 295 Query: 246 SNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + D DV + + G ACV V F R G+ G+R+YFP+V E +V+ F+GQFY Sbjct: 296 NPETVDEADVFALHAEGGQACVQVFFFRAGQNWGNRAYFPRVDKSDEDPDVMGAFLGQFY 355 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + +P IL++ ++ LL+++ + +GRK+ + RG++ + ++ A TNA Sbjct: 356 DD----KPIPRMILVNVVPAECELLSEAFCQKSGRKVEISRPQRGEKRQIVQHALTNARE 411 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL K+++ S + L + L +R+E +D SH MG V +V G ++ Sbjct: 412 ALGRKMAESSAQSKLLAGVCEAFGLEGSPERIEVYDNSHIMGTNAVGGMIVAGPEGFQKS 471 Query: 424 EYRRYNITG--ITPGDDYAAMNQVLRRRYGKAIDDSKI------PDVILIDGGKGQLAQA 475 +YR++NI +TPGDDY M +VLRRR+ + + + + PD++LIDGG+GQL A Sbjct: 472 QYRKFNIRSSELTPGDDYGMMREVLRRRFSRLVKEEEEGGEAVRPDLVLIDGGRGQLDAA 531 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V A+L V + ++GVAKG DR AGLE F E F L P SP L+ +Q +RD Sbjct: 532 MEVMADLGV----DDIPVVGVAKGPDRDAGLERFFMPG-KEPFMLEPKSPVLYYLQRLRD 586 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR +RA + L+ I+GVGP R++ LL G +G+ ASV ++AKV G Sbjct: 587 EAHRFAIGSHRTRRAMDMKKNPLDEIDGVGPGRKRALLHTFGSARGVSRASVADLAKVEG 646 Query: 596 ISQGLAEKIFWSLK 609 +S+ LA++I+ Sbjct: 647 VSEALAQRIYDHFH 660 >UniRef50_C9KP10 Excinuclease ABC subunit C n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KP10_9FIRM Length = 623 Score = 686 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 231/612 (37%), Positives = 349/612 (57%), Gaps = 29/612 (4%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQID 67 LK + PGVY M DA G +IYVGKA LK R+ YF+ + S K +A+V+ I + Sbjct: 7 EKLKLLPDSPGVYIMKDANGRIIYVGKAVVLKNRVRQYFQHNKNHSPKVKAMVSHIADFE 66 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 + +TH+E EAL+LE N IK ++P YN+ L+DDKSYP++ ++ + +PR+ + Sbjct: 67 IIMTHSEVEALILECNLIKKHRPHYNISLKDDKSYPYVKVTVQEEYPRVFLTHRVTKDGA 126 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+ + AV ++L LL+K+FP+R C + RPCL+Y I RCL PCV G V+EE Sbjct: 127 RYFGPYTDVTAVHQSLKLLRKLFPLRTCR----HLQERPCLEYHIKRCLAPCV-GKVTEE 181 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +YA + V LFL G+ V +L RME A++ FE AAR+RDQ++AV+++ EKQ + Sbjct: 182 DYAAMIRAVLLFLEGRTADVERELKVRMEQAAEAFHFETAARLRDQLRAVQKIAEKQNIV 241 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 D D IG+A CV V FIR GK++G + + ++++ F+ Q+Y + Sbjct: 242 TGAGDQDAIGLARSEIGVCVQVFFIRAGKMIGREHFLLQGSEEESDADILAAFLSQYYHR 301 Query: 307 GSQMRTLPGEILLDFNLSDKT--LLADSLSELA-GRKINVQTKPRGDRARYLKLARTNAA 363 + +P EILL +++ LL L+E G K+ + RG + + +A +NAA Sbjct: 302 AA---FVPREILLPMAIAEAEQALLESWLTEKKQGTKVQLLLPQRGTKRDIVAMAESNAA 358 Query: 364 TALTSKLSQQSTVHQRL----TALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 L + ++ ++ L L L ++ RMECFDISH G +TVAS VVF+ Sbjct: 359 KYLADEAARIKQADEKTMGAVRELGHYLGLKKMPYRMECFDISHIQGSETVASMVVFEGG 418 Query: 419 GPLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P +++YRR+ I DD+ +M +V RRY + + ++P++I+IDGGKGQL+ A Sbjct: 419 LPKKSDYRRFKIQSTEGKPDDFLSMREVTTRRYV-GLPEEELPNLIVIDGGKGQLSSALE 477 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 + ++G+AK E +F E E E LP S AL++I+ IRDE+ Sbjct: 478 IIRGAG---GHKDVPVVGLAKQ------FELVFKEGESEPVVLPRHSQALYLIERIRDEA 528 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRK R K S L+ I G+GPKRRQ L + G + +R ASVEE+ + PG++ Sbjct: 529 HRFAITYHRKLRGKRNLVSVLDHIVGIGPKRRQALRSHFGTIARIREASVEELQQAPGMN 588 Query: 598 QGLAEKIFWSLK 609 + AE ++ + Sbjct: 589 RPAAEAVYHFFE 600 >UniRef50_A6BHR5 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BHR5_9FIRM Length = 617 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 209/627 (33%), Positives = 359/627 (57%), Gaps = 32/627 (5%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVA 61 + F+ + LK + +PGVY M+D +IYVGKA LK R+ YF+S+ K E +V Sbjct: 2 ENFNIQEELKKLPGKPGVYLMHDEKDAIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVT 61 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 I + + VT +E EAL+LE N IK ++P+YN +L DDK+YPFI ++ + PR+ M R Sbjct: 62 HISRFEYIVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTVNEPFPRVMMARR 121 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPC 178 K K +YFGP+ + AV++T+ L++K++ IR C S+ + + RPCL Y I +C PC Sbjct: 122 MKKDKAKYFGPYTSTGAVKDTIELIRKLYHIRSCNRSLPKDIGKERPCLNYHIHQCYAPC 181 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 +G +S EEY + ++ V FL+G D +L +L +M AS+NLEFE+A R+ + +V++ Sbjct: 182 -QGYISREEYRKSIDEVVRFLNGNYDPILKELEEKMLDASENLEFEKAIEYRELLASVQK 240 Query: 239 VTEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + +KQ +++T GDD D+I +A + A V V FIR G+++G ++ K+ SE++ Sbjct: 241 IAQKQKITDTAGDDRDIIAMASEGEDAVVQVFFIRGGRLIGRDHFYLKIAENDTKSEILS 300 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 +F+ QFY + +P E++L + D+ ++ + L+ K+ ++ +G + + ++L Sbjct: 301 SFIKQFY---AGTPYIPAELMLPEEIEDQEIIEEWLTTRREHKVRLRIPKKGTKEKLVEL 357 Query: 358 ARTNAATALTSKLSQQSTVHQRL----TALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 A+ NA L + + R L +L L + RME +DIS+T G +V S V Sbjct: 358 AQKNAQMVLKNDKERLKREEGRTIGAVKELEKILGLTGIIRMEAYDISNTNGFDSVGSMV 417 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------IPDVI 463 V++ P R +YR++ I + DDYA+MN+VL RR+ + + + PD+I Sbjct: 418 VYEHGKPKRNDYRKFKIKSVQGPDDYASMNEVLTRRFEHGLRERQDESETGGFQAFPDLI 477 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 ++DGG+GQ+ A V +L+ H + G+ K + + L+F + + Sbjct: 478 MMDGGRGQVNIALEVLEKLN-----QHIPVCGMVKDDNHRTRG--LYF--NNVELPIDRN 528 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 S +I I+DE+H AI HR+ R+K + S L+ I GVGP RR+ L++ ++ +R Sbjct: 529 SECFRLITRIQDEAHRFAITFHRQLRSKGQVHSILDDIPGVGPARRKDLMRSFENIEAIR 588 Query: 584 NASVEEIAKVPGISQGLAEKIFWSLKH 610 NA+V+++ ++P +++ A++++ Sbjct: 589 NATVDDLKELPSMNEKSAQEVYKFFHQ 615 >UniRef50_Q2RS75 UvrABC system protein C n=13 Tax=Alphaproteobacteria RepID=UVRC_RHORT Length = 639 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 245/614 (39%), Positives = 347/614 (56%), Gaps = 21/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 +A L+T+ S PGVYRM D G V+YVGKA++LK+R+ +Y + + + + ++A + Sbjct: 33 IRAALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTM 92 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 +V THTE EALLLE N IK +PRYN+LLRDDKS+P+I ++ D PR+ RG Sbjct: 93 EVLTTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKG 152 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GEYFGPF + AV TL LQK F +R C ++V+ +RSRPCL +QI RC PCV+ V+E Sbjct: 153 GEYFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVD-RVAE 211 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 +Y VE R FLSG + L RM+ A+Q L++E+AA RD+I+A+ V Q + Sbjct: 212 ADYKALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDI 271 Query: 246 S-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + T + DVI G CV V F R G+ G+RS+FP G L EV+E F+GQFY Sbjct: 272 NLPTLGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFY 331 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 P EILL ++ L+ +L AG ++ + RG R + + A NA Sbjct: 332 AGF----PPPREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANARE 387 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL +L++ S L A L ++R+E +D SH G V VV G ++A Sbjct: 388 ALGRRLAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKA 447 Query: 424 EYRRYNITG--ITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQA 475 YR++NI ITPGDDYA M +V+ RR+ +A + PD++LIDGG GQL Sbjct: 448 AYRKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAV 507 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + AE+ V L+GVAKG DR AG E F F L + P L+ IQ +RD Sbjct: 508 REALAEIGV----EDVPLVGVAKGPDRDAGRERFFVPGRP-PFMLRHNDPVLYFIQRLRD 562 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR +R+K S L+++ G+G R++ LL + G + + A + ++ V G Sbjct: 563 EAHRFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEG 622 Query: 596 ISQGLAEKIFWSLK 609 IS LA+K++ Sbjct: 623 ISAALAKKLYDHFH 636 >UniRef50_Q2G9G8 UvrABC system protein C n=2 Tax=Sphingomonadales RepID=UVRC_NOVAD Length = 658 Score = 685 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 234/610 (38%), Positives = 354/610 (58%), Gaps = 18/610 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + ++T+ +PGVYRM DA G V+YVGKA+ LK R+++Y + + +V+Q + + Sbjct: 53 IRETVQTLKPKPGVYRMLDARGDVLYVGKARALKNRVANYTQVERLPNRLRRMVSQTRSM 112 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 + T++E EALLLE IK ++P YNVLLRDDKS+PFI L GD PR++ HRGA+ AK Sbjct: 113 TIVTTNSEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLRGDHAFPRISKHRGARKAK 172 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G Y+GPF + +V T+ LQK+F +R C + R RPCL YQI RC PCV G +SE Sbjct: 173 GNYYGPFASAGSVNTTINALQKLFLLRSCNDGFMARRDRPCLLYQIRRCSAPCV-GRISE 231 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 +Y + V + FL GK V ++ ++M A+++L+FE AA +RD+++A + Q + Sbjct: 232 ADYGELVRQAKDFLGGKSGAVQREIEAQMHKAAEDLDFERAAMLRDRLRAATFIQGSQAI 291 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + G + DV +A G V FIR G+ G R++FP G EV+ +F+ QFY Sbjct: 292 NAEGVGNADVFAMATKGGQVAVQAFFIRGGQNWGHRAFFPSHTEGLSEEEVMTSFLAQFY 351 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + R IL+D L + LLA++L E AG K+ + RGDR R ++ A+ NA Sbjct: 352 EEVPPARL----ILVDRALPEADLLAEALCEAAGGKVEISVPQRGDRRRLMEQAQRNAVE 407 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL ++++ T + + LA L+LPEV R+E +D SH G + + VV G ++ Sbjct: 408 ALDRRMAESGTKAKVMRELAEFLELPEVPQRIEIYDNSHIQGTNALGAMVVAGPEGFVKG 467 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQAKN 477 +YR++NI DD+A M +V+ RR+G+A ++ PD++LIDGGKGQ++ K Sbjct: 468 QYRKWNIKLAQTNDDFAMMREVMTRRFGRAQEEDPDRESGNWPDLVLIDGGKGQMSAVKE 527 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 EL + L+ +AKG +F P+G LP +SP L +Q +RDE Sbjct: 528 ALGELGI----EDVPLVAIAKGPHHGREGREVFHFPDGREKMLPVNSPVLFQLQVMRDEV 583 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AIG HR KR++ S L+ I G+GP R++ LL + G +R AS+E++ + PG+S Sbjct: 584 HRFAIGAHRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAASLEDLQRAPGVS 643 Query: 598 QGLAEKIFWS 607 +A+ I+ Sbjct: 644 AAVAQTIYDF 653 >UniRef50_A0L8U4 Excinuclease ABC subunit C n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8U4_MAGSM Length = 617 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 259/607 (42%), Positives = 371/607 (61%), Gaps = 14/607 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQ 65 K +K + +PGVYR YD G ++YVGKAK L+KR+SSYF S KT +V QI + Sbjct: 15 LKRDVKQLPLKPGVYRFYDDAGQLLYVGKAKALRKRVSSYFNHLAGHSPKTVVMVKQIMR 74 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHA 124 ++ T T E +AL+LE N IK +QPRYNVLL+D+KSYP++ L+ D +PRLA++RG + A Sbjct: 75 LEFTTTANENDALVLEANLIKAHQPRYNVLLKDNKSYPYLHLTTDHAYPRLALYRGDRKA 134 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 +G +FGP+P+ +AVRETL LQKIFP+RQCE+S + +RSRPCLQYQI RC GPC + + Sbjct: 135 RGRFFGPYPSAHAVRETLNWLQKIFPVRQCEDSQFNHRSRPCLQYQIHRCGGPCCD-RID 193 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 Y V V LFL GKD Q++ L M A+Q +FE AAR+RD+I + V E++ Sbjct: 194 VTSYGAMVSQVTLFLEGKDKQLVNTLKEAMWQAAQARDFEGAARLRDRIAGIEHVQERRR 253 Query: 245 VSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 ++ +G+ DLDV+ VA A V V FIR G LG+R++F + + SE+++ FV QF Sbjct: 254 LNLSGEIDLDVMSVAVGLKKAVVQVFFIRAGINLGNRAFFLERGEEDDPSEILQAFVSQF 313 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 YL + P EILL+ + +L ++LS G+ + ++ RG+R R L++A NA Sbjct: 314 YLD----KPPPPEILLEHLPQQQEMLEEALSARLGKAVKLRQPQRGERRRLLEMAVENAQ 369 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLR 422 AL S + V +L AL + L E R+E +D SH + V + VVF A+G + Sbjct: 370 QALKQYQSSRDHVRTQLEALQELFNLAEPPQRIEIYDNSHIQDQHAVGAMVVFGADGFEK 429 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAE 481 +YR++N+ + DD A M +VL RR+ + + + + PD++L+DGG QL A V E Sbjct: 430 NQYRKFNLEASSAPDDTARMIEVLTRRFKRLKEGEGRWPDLVLLDGGIAQLNAAMKVVEE 489 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L + +AKG R AG E LF LP D+P LH +Q +RDESH Sbjct: 490 LQIDG----VAFSAIAKGPQRHAGREQLFLPDRPNPLILPHDAPLLHFLQVVRDESHRFV 545 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 IG HR +RAK + +S L+ I GVG +R++ L+K G ++G+R A++ EIA +PG S LA Sbjct: 546 IGYHRTRRAKGQTSSRLDGIAGVGAQRKKALIKQFGSVKGVRQATLAEIAALPGFSTELA 605 Query: 602 EKIFWSL 608 I +L Sbjct: 606 ATILATL 612 >UniRef50_B2FK26 UvrABC system protein C n=29 Tax=Proteobacteria RepID=UVRC_STRMK Length = 614 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 306/615 (49%), Positives = 411/615 (66%), Gaps = 16/615 (2%) Query: 1 MSD----QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKT 56 M+D FD KAF +++ PGVYRMY A T++YVGKA+ L+ R+ SYF + + + Sbjct: 1 MTDVPAPAFDGKAFAAQLSTAPGVYRMYAADDTLLYVGKARALRNRVGSYFNGSPKNARI 60 Query: 57 EALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLA 116 ++++QI ++DVTVT +E EALLLE+ IK PRYNV LRDDK+YP + L+ + PR+A Sbjct: 61 MSMISQIVRMDVTVTRSEAEALLLENQLIKSLSPRYNVSLRDDKTYPHVLLTREDWPRIA 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 +HRG + G YFGP+P AVRETL L+ K+F +R CE+SV+RNRSRPCLQYQIGRC Sbjct: 121 LHRGPRAIPGRYFGPYPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSA 180 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PCVE LV+ EYA+ V LFL GK D++ +L +M+ AS+ LEFE+AAR+RD I ++ Sbjct: 181 PCVE-LVAPAEYAESVRRAALFLEGKSDELTRELGEQMQAASEALEFEQAARLRDLISSL 239 Query: 237 RRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 R + +Q+V DLDV+ VA ACV +L R G+ LG+R +FP+ G EV+ Sbjct: 240 RSMQTRQYVDGRAADLDVLAVAMQGSQACVLLLAFRDGRNLGTRPFFPRTNGEESPEEVL 299 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 FV Q+Y++ P EILLD + D LL +LS A RK+ ++ RG+RA Y++ Sbjct: 300 AAFVSQYYIEF----EPPREILLDREIPDADLLVAALSASAERKVQLKWNVRGERAGYVE 355 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVF 415 LA NA L ++L+ ++ H R AL +L L E KR+ECFDISHT+GE TVASCVVF Sbjct: 356 LASRNAQLTLATELNSRNAQHARSDALREMLGLAEPVKRVECFDISHTLGEATVASCVVF 415 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQ 474 DA GP+RA+YRR+NI+GI PGDDYAAM Q + RR+ +A+++ +PDV+LIDGG GQLAQ Sbjct: 416 DAAGPVRAQYRRFNISGIEPGDDYAAMRQAIDRRFRRAVEEQGVLPDVLLIDGGAGQLAQ 475 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 A+ A+L V LL+GVAKG +R+AG E L +G +PAL IQ +R Sbjct: 476 AQAALADLGVEG----VLLVGVAKGVERRAGHEALVMP-DGRELRPGAANPALQFIQQVR 530 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE+H AI GHR +R K + TS LE I G+GP+RR LLK+ GGL GL+ A EIAKV Sbjct: 531 DEAHRFAITGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIAKVE 590 Query: 595 GISQGLAEKIFWSLK 609 GI+ LA +I+ +L Sbjct: 591 GINDALAARIYANLH 605 >UniRef50_Q47Z18 UvrABC system protein C n=274 Tax=Gammaproteobacteria RepID=UVRC_COLP3 Length = 639 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 335/622 (53%), Positives = 434/622 (69%), Gaps = 21/622 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD++AFL+ VT Q GVYRMYD+ VIYVGKAK LKKRL+SYFR ++ S KT+ LV QI Sbjct: 20 FDSEAFLRVVTEQAGVYRMYDSKQVVIYVGKAKQLKKRLASYFRKDVGSVKTQVLVKQIA 79 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I+VTVTHTE EAL+LE+NYIK YQP+YN+LLRDDKSYP++ ++ HP+L +HRG K Sbjct: 80 AIEVTVTHTEGEALILENNYIKKYQPKYNILLRDDKSYPYLLITAHKHPKLGLHRGGKKV 139 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 KGEYFGPFP AV E+L L+QKIFPIRQCE+S YR RSRPCLQ+Q+GRC PCV+ +S Sbjct: 140 KGEYFGPFPTVGAVWESLRLMQKIFPIRQCEDSYYRARSRPCLQHQLGRCSAPCVD-KIS 198 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 ++Y +QV +LFL GK V+ QL++RME AS L FE AA+ RDQI +R+V ++Q Sbjct: 199 VDDYKEQVNLAKLFLQGKSSAVIEQLVARMELASNELHFELAAKYRDQIVTLRKVQQQQH 258 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 VS +LDV+G+ D C+H+LFIRQ K+LGS+SYFP VP + SE+++ F+ Q Y Sbjct: 259 VSGHVAELDVVGLYRDKTQVCIHLLFIRQHKILGSKSYFPTVPSESSDSEILQAFIAQHY 318 Query: 305 LQGSQM------RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 L + ++P EI++ ++ LA LSE A + + T R +RA+YLKLA Sbjct: 319 LSNEMLSHGKVQSSIPKEIVIKESIEQVVELARLLSEQAEYDVKISTNTRSERAQYLKLA 378 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 TNA TAL ++ S + ++ R AL V +L ++R+ECFDISHTMG+QTVAS VVF+ Sbjct: 379 GTNAHTALVTRNSHKESMQARFVALNEVFELENGIQRIECFDISHTMGQQTVASNVVFNQ 438 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----------KIPDVILIDG 467 GPL+ +YRRYN+ GITPGDDYAAM L +RYGK + K+PD++ IDG Sbjct: 439 EGPLKTDYRRYNVFGITPGDDYAAMAFALNKRYGKLKANPIKPEEHGALEKLPDIVFIDG 498 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQLA+A+ F++L ++ PLL+GVAKG RK GLETL + SLP SPAL Sbjct: 499 GKGQLAKAEEFFSQLALT---RTPLLVGVAKGESRKPGLETLILAGSHQLISLPATSPAL 555 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 H++QHIRDESH AI GHR KR KV S LE+IEG+G K+RQ LL ++GGLQ + A + Sbjct: 556 HLVQHIRDESHRFAITGHRAKRQKVSKKSRLESIEGIGAKKRQSLLTFLGGLQEVMQADI 615 Query: 588 EEIAKVPGISQGLAEKIFWSLK 609 +AKVPGIS LAEKI +L Sbjct: 616 TALAKVPGISHVLAEKIHNALH 637 >UniRef50_A6SXR9 UvrABC system protein C n=19 Tax=Betaproteobacteria RepID=UVRC_JANMA Length = 618 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 291/625 (46%), Positives = 402/625 (64%), Gaps = 27/625 (4%) Query: 2 SDQFDAKAFL----KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 +D D +A + + + PGVYR +DA ++YVGKA+DLKKR+SSYF NLAS +T Sbjct: 4 TDAPDPRAIVLETVAKLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNLASPRTA 63 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAM 117 +V +I +++ TVT +E EALLLE+N IK QPRYN+L RDDKSYP++ ++G +PR+A Sbjct: 64 LMVERIARLETTVTRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQEYPRMAY 123 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 +RGA K +YFGPFP+G+AV+E++ +LQK+F +R CE+SV+ NR+RPCL +QI RC GP Sbjct: 124 YRGAVDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSGP 183 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 CV +S+E+YA VE FL G+ +VL L +M ++ L+FE+AA +R+QI A+ Sbjct: 184 CV-NFISKEDYALDVENAAKFLRGRQSEVLETLQGKMLAYAEELKFEQAALVRNQINALS 242 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP-------GG 289 RV +Q + GD D+D+I V G ACV++ +R G+ LG R+YFP Sbjct: 243 RVLHQQSMETGGDADIDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALASAEE 302 Query: 290 TELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 + +EV++ F+ Q Y++ + +PG ++L+ + + L+ +L E G +INV +P+G Sbjct: 303 SIATEVMKAFLAQHYIE----KFIPGTLILNTEMDEPELML-ALMEQCGHRINVVFQPQG 357 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMG 405 R ++L++A A +L LS+Q + R L L + R+ECFDISHT G Sbjct: 358 QRRQWLEMAHKGAEISLARLLSEQGSQQARTRMLVDALGIDVPDLESFRVECFDISHTQG 417 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVIL 464 E T ASCVVF + EYRRYNI ITPGDDYAAM QVL RRY K + D +PDV+L Sbjct: 418 EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLLRRYEKVANGDGVMPDVVL 477 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 IDGGKGQ+ A+ VF EL + L++GVAKG RK GLETL F L +S Sbjct: 478 IDGGKGQVEMARQVFVELGLDIS----LIVGVAKGEGRKVGLETLVFVDGRPPQELGKES 533 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 AL +I IRDE+H AI G R KRAK + TS LE IEG+G KRRQ LL GGL+G+ + Sbjct: 534 GALMLIAQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVD 593 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLK 609 AS+E++A V GIS+ LAE I+ L Sbjct: 594 ASIEDLASVEGISRQLAEDIYKQLH 618 >UniRef50_A3DJ07 UvrABC system protein C n=15 Tax=Bacteria RepID=UVRC_CLOTH Length = 625 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 223/635 (35%), Positives = 356/635 (56%), Gaps = 42/635 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQI 63 FD + LK + +PGVY M D G +IYVGKA LK R+ YF+S + + K A+VA I Sbjct: 2 FDIQEELKKLPDKPGVYIMKDENGEIIYVGKAVVLKNRVRQYFQSLSNQTPKVRAMVAHI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ++ + VT TE EAL+LE N IK ++P++N+LL+DDK+YP+I ++ + PR+ M R + Sbjct: 62 KEFEYIVTDTELEALILECNLIKKHRPKFNILLKDDKNYPYIKVTMNEDFPRILMTRRVE 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVE 180 +YFGP+ + YAVRET+ L++K+FP++ C + R + RPCL Y I +CLGPC + Sbjct: 122 KDGAKYFGPYTSAYAVRETIDLVKKLFPVKTCSKVLPRDIGKGRPCLNYHIYQCLGPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G VS+EEY ++ V FL G+ + ++ +L M+ A+ NLEFE AARIRD+I +++ + Sbjct: 181 GNVSKEEYRFMMQDVCNFLGGRQEDIIKKLEKDMKEAADNLEFERAARIRDKINSLKHIA 240 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + +T +D DVI A +C+ V FIR GK++G + + SE++ F Sbjct: 241 EKQKIISTAMEDQDVIAFAKSETDSCIQVFFIRGGKLIGREHFILEGTSDVSDSELMTAF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 V QFY + +PG+I+L ++ + ++ LS G K ++ RG++ + +++ Sbjct: 301 VKQFYSSAA---YVPGQIILQEDIDEMEIIEKWLSGKRGTKTYIKVPRRGEKLKLVEMVS 357 Query: 360 TNAATALTSKLSQQSTV----HQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVV 414 NA L + + + L +L L + R +E +DIS+T + V S VV Sbjct: 358 KNALIELNQFKERIKKEAALAKEGMEKLKELLNLDRLPRRIEAYDISNTGSTEIVGSMVV 417 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD------------------ 456 F+ P +++YRR+ I I +DY +M +V+ RR +A + Sbjct: 418 FENGSPKKSDYRRFKIKSINVQNDYQSMQEVIFRRLKRAQKEMTEKDEGGGKDVGEKGAG 477 Query: 457 -SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG 515 +PDV+L+DGG G + ++V ELD + + G+ K + + Sbjct: 478 FGTLPDVLLVDGGTGHVNAVRSVLEELDFN-----IPVYGMVKDDNHRTRG----LVTGE 528 Query: 516 EGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKY 575 F L D L + I+DE+H A+ +RK RAK + S L+ IEGVGPKR++ L+++ Sbjct: 529 REFDLSKDIVLLRFVTAIQDEAHRFALEYNRKLRAKRYSGSVLDNIEGVGPKRKKELIRH 588 Query: 576 MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 G ++ ++ A EIAKV GIS+ LA+KI+ + Sbjct: 589 FGSVKAIKEAEPGEIAKVKGISRDLAQKIYDYFRQ 623 >UniRef50_B8FHR2 UvrABC system protein C n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=UVRC_DESAA Length = 603 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 232/607 (38%), Positives = 354/607 (58%), Gaps = 12/607 (1%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQ 64 + + L T+++ PGVY M D G +IYVGKA+ LKKR+SSYF KT LV +I Sbjct: 3 EIEKKLATLSNGPGVYLMKDESGEIIYVGKARSLKKRVSSYFLEKPNRDLKTGILVKKIA 62 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 D + TE EAL+LE N I+ ++PRYN+LL+D K +P + + ++PRL + R K Sbjct: 63 SFDAILVTTEKEALILEANLIRKHKPRYNILLKDGKRFPSLRIDVRTSYPRLEVVRKVKK 122 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 YFGPF + +R TL ++ K F +R+C+ R+RPCL YQ+G+CLGPC V Sbjct: 123 DGAIYFGPFSSAGKLRSTLKIINKTFQLRKCKQKEPPKRNRPCLNYQMGQCLGPCCL-PV 181 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +EY V V LFL G+ + +L ++ +M AS+ E+E AAR+RD++ A++ EKQ Sbjct: 182 DRDEYLDMVNEVILFLKGRTNDLLQKIKEQMAAASERQEYELAARLRDRMFAIQATVEKQ 241 Query: 244 F-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V+ D DVIG+ + + + VL+IR G +LGSR+Y GT+ SE ++ F+ Q Sbjct: 242 AAVTTDFVDRDVIGIDREPEGSAISVLYIRGGFLLGSRNYNFDEVLGTD-SESIQAFLRQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y + R +P E+ + L + L+ L+E A +++ + RG++ R +++A NA Sbjct: 301 YY---DKDRFIPDEVFVPCQLENMELMEQWLTETAEKRVVLHWPQRGEKTRLIEMANENA 357 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPL 421 AL ++S ++ L L L++ R +ECFDISHT G QTVAS +VF+ Sbjct: 358 HEALKDRISSENVFKSLLERLQKRLRMDRPPRRIECFDISHTGGNQTVASMIVFEDGKEA 417 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAE 481 ++EYR +NI + DDYAAM++V+ RR+ D PDV+LIDGGKGQL+ +V Sbjct: 418 KSEYRTFNIDSLDHPDDYAAMHEVMARRFS-PDKDWPTPDVLLIDGGKGQLSITASVLDG 476 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L V + K +K ++ ++ + D L +Q +RDE+H A Sbjct: 477 LGVMGAFEVISIA--KKDEAKKETMDKIYRPGQANPVVFGRDGDVLLFLQRVRDEAHRFA 534 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I HRKKRAK S+L+++ G+G KR++ LL++ G ++ L+ AS E+IA+VPGIS A Sbjct: 535 ITTHRKKRAKTIRKSALDSVPGIGEKRKKALLRHFGSIKRLKEASPEDIAQVPGISVKRA 594 Query: 602 EKIFWSL 608 ++I +L Sbjct: 595 QEILEAL 601 >UniRef50_Q21AW5 UvrABC system protein C n=89 Tax=Alphaproteobacteria RepID=UVRC_RHOPB Length = 699 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 243/620 (39%), Positives = 351/620 (56%), Gaps = 30/620 (4%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 ++ + PGVYRM +A V+YVGKAK++KKRL+SY R + ++A +++ Sbjct: 86 AVRLAPTSPGVYRMLNAASDVLYVGKAKNVKKRLASYARPTGHVVRISRMIAATVSVEII 145 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRGAKHAKGEY 128 T TETEALLLE N IK +PR+NVLLRDDKS+P+I ++GD P++ HRGA+ G Y Sbjct: 146 STATETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQIIKHRGAQSRPGRY 205 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF + +V T+ LQ+ F +R C ++ + +R+RPCL YQI RC GPC G + Y Sbjct: 206 FGPFASVGSVNRTITALQRAFLMRSCTDAFFESRTRPCLLYQIKRCAGPCT-GEIDFPGY 264 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN- 247 V FLSG+ V +L ME AS LEFE AA RD++ A+ + +Q ++ Sbjct: 265 TALVREATDFLSGRSRLVKQELAGEMEKASAELEFETAALYRDRLAALSAIQSQQGINPR 324 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 T ++ DV + + G CV V F R G+ G+R+YFP+ + EV+ F+ QFY Sbjct: 325 TVEEADVFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKTFTVEEVLAAFLAQFYDDK 384 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + P +ILL + + LLA++L +G K+ + T RG++ + A TNA AL Sbjct: 385 A----PPKQILLSHRIEECELLAEALCIKSGHKVEILTPQRGEKKELVGHALTNAREALG 440 Query: 368 SKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 KL+ +T + L L + LKLP KR+E +D SH G V + +V +G ++ +YR Sbjct: 441 RKLADTATQTRLLQGLVTTLKLPHTPKRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYR 500 Query: 427 RYNIT--GITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGK 469 ++NI GITPGDDY M +VL RR+ + + PD+++IDGG+ Sbjct: 501 KFNIRSEGITPGDDYGMMREVLERRFKRLLAPPPEAEAGKPKPDDEVPQWPDLVIIDGGR 560 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL + +F L +S L+ VAKG DR AG ETLF L P P L+ Sbjct: 561 GQLNAVQEIFQALGLST----VTLMAVAKGPDRDAGRETLFMPDRL-PIKLEPRDPVLYF 615 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 IQ +RDE+H IG HRK R K + L+ I G+GP R++ LL + G L+ + AS+ + Sbjct: 616 IQRLRDEAHRFVIGSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGD 675 Query: 590 IAKVPGISQGLAEKIFWSLK 609 + KVPGIS A++IF Sbjct: 676 LGKVPGISAESAKRIFDYFH 695 >UniRef50_B0VLX1 UvrABC system protein C n=17 Tax=Moraxellaceae RepID=UVRC_ACIBS Length = 599 Score = 678 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 276/606 (45%), Positives = 394/606 (65%), Gaps = 17/606 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L +T PGVY+M G ++YVGKAK+LK R+SSYF + KT+ALVA+I I Sbjct: 9 IEKILANLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDI 68 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGA-KHA 124 + VT +ETEALLLE N IK ++P YN++LRDDKSY +IF+S D +PR+A RG KH Sbjct: 69 ETLVTRSETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQ 128 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G++FGP+P+ Y+ R+TL +LQK+F +RQCENS + R RPCLQYQI RC PCV GLVS Sbjct: 129 IGKFFGPYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCV-GLVS 187 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E+Y + V FL G ++ +LI++ME A+ +LEFE+A RD++ +R V +Q Sbjct: 188 PEDYKEDVNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQA 247 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 V + D++ + + AG+ CV ++ +R G++LG +SYFP + G +L +++ F+ FY Sbjct: 248 VFKVKGEADILAITYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFY 306 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 Q + +P E++++ L D+ L ++L++ G+K+ +++ R RA +L+LA N Sbjct: 307 FQVADE--VPSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQH 364 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 A+ +LS +++R L V+ P + R+ECFDISHTMGE +ASCVVFD G + + Sbjct: 365 AIKGQLSNHLELNERFHQLEQVVGRP-IDRIECFDISHTMGEAPIASCVVFDQGGARKRD 423 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YR++ I IT GDDYAAM Q L RRY KA+ +PD++LIDGGKGQL A V EL + Sbjct: 424 YRQFAIQDITAGDDYAAMRQALTRRYKKAM----LPDLLLIDGGKGQLHMAMEVMQELGL 479 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 ++GV+KG RK GLETL F +G LP DS ALH+IQ +RDE+H AI Sbjct: 480 EA-----FMVGVSKGEGRKPGLETLHF-TDGTKIQLPEDSKALHLIQQVRDEAHRFAITK 533 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 HR KR K ++TS LE I G+GPKRR+ LL + GG+QG+ AS +E+ VPG+ + +A I Sbjct: 534 HRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEVMARTI 593 Query: 605 FWSLKH 610 + L Sbjct: 594 YKILHE 599 >UniRef50_B7AWB5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AWB5_9BACE Length = 640 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 213/652 (32%), Positives = 349/652 (53%), Gaps = 60/652 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQI 63 FD + LK + S+PGVY M+D +IY+GKA LK R+ YF+S+ S K + +V+ I Sbjct: 2 FDIEEELKKLPSKPGVYIMHDKTDAIIYIGKAVSLKNRVRQYFQSSRNLSVKIQHMVSNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + +T +E EAL+LE N IK ++P+YN +L+DDKSYPFI ++ + +PR+ R K Sbjct: 62 DHFEYIITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEKYPRVLFARSMK 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVE 180 K YFGP+ + AV++T+ LL +++ IR C + + + RPCL Y I +C PC + Sbjct: 122 KDKSRYFGPYTSAGAVKDTIELLCRLYRIRTCSRKLPADMCKDRPCLNYHINQCSAPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G +SEEEY + V V FL+G ++L +L +M AS +E+E+AA+ RD I +V+++ Sbjct: 181 GYISEEEYKESVRQVIDFLNGNYSEILNKLKDKMMEASDKMEYEDAAQYRDLITSVKQIA 240 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +KQ ++++ +D DVI A A V V FIR GK+LG + V E+V+ F Sbjct: 241 QKQKITDSDFEDRDVIACAIQGDDAVVQVFFIRGGKLLGREHFHMNVAASDSRMEIVQEF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+Y +PG I++ LS+K ++++ L+ G K+++ +G R + ++LA Sbjct: 301 MKQYYGG---TPYIPGIIMVQDELSEKDIISEWLTSRRGLKVSILVPKKGTREKMVELAF 357 Query: 360 TNAATALTSKLSQQSTVHQ----RLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA L + + + +A L L +KR+E +DIS+T G ++V S VVF Sbjct: 358 KNAQMVLDKDNERIKNEQKKTVGAMQEIADWLDLGTIKRVEAYDISNTNGIESVGSMVVF 417 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI---------------- 459 + P +YR++ I + DDY +M +VL RR+ + +++ +I Sbjct: 418 EDGRPKNNDYRKFRIKTVKGPDDYKSMREVLTRRFTRGMEERRILVEQEHKDRLLAEQEI 477 Query: 460 ----------------------PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 PD+I++DGG+GQ+ A +V EL + + G+ Sbjct: 478 VIDEAAGGETKEKIHLAGFNVYPDLIMMDGGRGQVNIALDVLNELGL-----DIPVCGMV 532 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 K + + + S +I ++DE+H AI HR R+K + +S Sbjct: 533 KDDNHRTRG----LYYNNVEIPIDRHSEGFKLITRVQDEAHRFAIEYHRSLRSKAQVSSV 588 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 L+ IEGVGP RR+ L+K+ + +RNA VEE+ + GI++ +A I+ Sbjct: 589 LDDIEGVGPARRKALMKHFLDINVIRNADVEELMQADGITRQVAGNIYRYFH 640 >UniRef50_C6NXT8 Excinuclease ABC subunit C n=2 Tax=Gammaproteobacteria RepID=C6NXT8_9GAMM Length = 624 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 278/611 (45%), Positives = 392/611 (64%), Gaps = 13/611 (2%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 + FD K FL+++ SQPGVY+M A G ++YVGKA++LK+R+SSYF+ S KT A++AQ Sbjct: 17 EPFDLKLFLRSLGSQPGVYQMLAADGHILYVGKARNLKRRVSSYFQKTRHSPKTLAMLAQ 76 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGA 121 + +++V VTHTETEAL+LE IK ++P YN+LLRDDKSYP++++ + PR+++HRG Sbjct: 77 VARVEVLVTHTETEALVLEAQLIKKHRPHYNILLRDDKSYPYLYIDTSSAFPRMSLHRGT 136 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + KG YFGP+P A+RE++ LLQK F +R CE+SV+ NRSR CL YQI RC GPCV G Sbjct: 137 QRGKGHYFGPYPAVSALRESMVLLQKAFRLRTCEDSVFHNRSRACLHYQIRRCSGPCV-G 195 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + E+ Y + ++ FL GK D+ + L RM A++ L+FEEAAR RDQI A+ ++ E Sbjct: 196 HIDEKSYHRDLQDALRFLQGKSDEAIRTLQQRMLAAAERLDFEEAARRRDQIAALSKIQE 255 Query: 242 KQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q+V+ G D DV+ G V V FIR G+ LG R+ FP+ P SEV+ F+ Sbjct: 256 RQYVAQAGGGDFDVLAAVEADGQWVVFVTFIRHGRQLGGRAIFPQHPDTARGSEVMAAFL 315 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y R +PG +L++ LA +L + AGRK+ ++ RG R R+L +A Sbjct: 316 MQYYAD----REIPGNVLVNVLPRAAASLASALGQNAGRKVLLEQPQRGPRRRWLAMAVA 371 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 NA AL + + +R+ L + L + R+ECFDISHT GE ASCVVF +G Sbjct: 372 NANEALRQRAQRADGGRRRMRLLQELFSLDRLPERVECFDISHTRGEAATASCVVFGEDG 431 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 L+AEYRR+N+ ITPGDDYAAM Q + RRYG+ + + +PD++ IDGG Q+A+A+ Sbjct: 432 ALKAEYRRFNLRDITPGDDYAAMEQAVSRRYGRLLQEGLSLPDIVFIDGGPAQVARAQAA 491 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 +L + LL GVAKG R+ GLE L + L PAL VIQ IRDE+H Sbjct: 492 LDDLGI----REILLCGVAKGTSRRPGLEWLHTTLWTQPRQLSSGDPALLVIQEIRDEAH 547 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI GHR +R+K + S L++I G+GPKRR LL+ GGL+G+R+A VE++ +V GI Sbjct: 548 RFAITGHRARRSKARQESELDSIGGIGPKRRVALLRAFGGLRGIRDAGVEDLQRVEGIHA 607 Query: 599 GLAEKIFWSLK 609 LA++I+ Sbjct: 608 ELAQRIYAHFH 618 >UniRef50_B0K791 UvrABC system protein C n=11 Tax=Thermoanaerobacterales RepID=UVRC_THEP3 Length = 615 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 216/628 (34%), Positives = 355/628 (56%), Gaps = 37/628 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQI 63 + LK + +PGVY M D G +IYVGKA LK R+ YF++ K + +++ + Sbjct: 1 MTIEEKLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHV 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + VT TE EAL+LE N IK Y+P+YNVLL+DDK+YP+I ++ + +PR+ R + Sbjct: 61 EDFEYIVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIE 120 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVE 180 +YFGP+ + +AVRET+ L++K+FPIR C ++ + + R CL Y IG C PC Sbjct: 121 PDGAKYFGPYSSAFAVRETIKLVRKMFPIRTCNKNIEKDMGKVRECLYYHIGLCSAPCT- 179 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 +++E+Y + V+ LFL GK D ++ +L M+ A++ L FEEAARIRDQI A+ R + Sbjct: 180 NKINKEDYIKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTS 239 Query: 241 EKQFVSNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ V + G+D D+I +A A ++C+ V F+R GK+ G Y+ K G E E++ +F Sbjct: 240 EKQKVVSVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSF 299 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY +P EI+ D L + LL++ LS+ G K+ + RG + + + Sbjct: 300 IKQFYEGA---PYIPKEIITDVELDESELLSEWLSQKRGNKVFITIPVRGKKKELVDMVY 356 Query: 360 TNAATALTSKL--SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 NA AL + + ++ + Q + L++++ L KR+E +DIS+T G+ V S VVF Sbjct: 357 QNALEALKNDISIREEISKAQVVLELSNLVGLDYAKRIEAYDISNTRGQDNVGSMVVFVD 416 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI----------------PD 461 P +++YR++NI + DDY +M +V+ RR+ AI++ ++ PD Sbjct: 417 GKPKKSQYRKFNIKYVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPD 476 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +I +DGG G + V + L +S + G+ K + + P+GE +P Sbjct: 477 LIFVDGGIGHVNAVLQVLSGLGIS-----IPVYGMVKDSKHRTRG---LVSPQGE-IDIP 527 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 S A +I I++E+H AI H++K++K S L I G+G KR + L ++ Sbjct: 528 MTSKAFRLIAQIQEEAHRFAITFHKEKQSKR-FKSELLNIPGIGEKRAKALYDAFKSIEE 586 Query: 582 LRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ ASVE++ KV G+++ A+ ++ + Sbjct: 587 IKRASVEDLKKVEGMNEKAAQAVYEYFR 614 >UniRef50_Q0BPX7 UvrABC system protein C n=43 Tax=Alphaproteobacteria RepID=UVRC_GRABC Length = 644 Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 234/617 (37%), Positives = 364/617 (58%), Gaps = 25/617 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 +A LK + +PGVYRM D G +YVGKA+ LKKR++SY + + + +V++ + Sbjct: 33 IEAMLKLLPDRPGVYRMLDGQGEALYVGKARSLKKRVASYTQIHRLPERLRRMVSETVSM 92 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAK-HA 124 ++ THTE EALLLE N IK +PR+N++LRDDKSYP++ L+ D P++ HRGA+ Sbjct: 93 EIVTTHTEAEALLLEANLIKRLKPRFNIVLRDDKSYPWLMLTEDHAFPQIMKHRGAQTRK 152 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 Y+GPF + +AV +T+ +Q+IF +R C +SV+ NRSRPCL +QI RC PCV+ +S Sbjct: 153 AASYWGPFASAWAVNQTVTAMQRIFLLRSCSDSVFANRSRPCLLFQIRRCSAPCVD-RIS 211 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +E+YA+ V+ R FLSG+ ++ L +ME A++ LEFE AA IRD+I+ + V Sbjct: 212 QEDYAELVDQARAFLSGRGTEIQRDLARQMEQAAEALEFERAAAIRDRIRGLTHVQGTAV 271 Query: 245 VSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V+ + + DVI V DAG +CV V FIR G G+R+++P +V+ F+ QF Sbjct: 272 VNPASIGNADVIAVWQDAGQSCVQVFFIRGGHNNGNRAFYPAHTSAETAQDVLGAFIAQF 331 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y L + ++++ L++++LS AGR++ + RG++ + A TNA Sbjct: 332 YDDKPPPPLLLL----NHTIAEQELVSEALSLKAGRRVELHVPVRGEKRAVVAHAETNAR 387 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 AL KL++ + ++ L +A + LP R+E +D SH MG VV G + Sbjct: 388 EALERKLAESAGQNRLLDGVAELFDLPTRPNRIEIYDNSHIMGTNPYGVMVVAGPEGWNK 447 Query: 423 AEYRRYNITG-ITPGDDYAAMNQVLRRRYGKAID--------DSKIPDVILIDGGKGQLA 473 + YR+++I G ITPGDD+A M ++L RR+ + + ++ PD++LIDGG GQL+ Sbjct: 448 SAYRKFSIRGPITPGDDFAMMREMLERRFSRGLKERAEGPEGEANWPDLVLIDGGAGQLS 507 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGE-GFSLPPDSPALHVIQH 532 + + E+ V+ L+ +AKG DR AG E +F EG+ F LPP P L+ +Q Sbjct: 508 AVRGILDEIGVT----DVKLVAIAKGPDRDAGRE--WFHTEGQAPFQLPPRDPVLYYLQR 561 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI HR R+K S L+ I+G+G R++ LL + G +G++ A + + Sbjct: 562 LRDEAHRFAITTHRAGRSKTLVRSELDDIDGIGAARKRALLNHFGSARGVKQAGLAALEA 621 Query: 593 VPGISQGLAEKIFWSLK 609 PGIS+ A +I+ Sbjct: 622 TPGISKETARRIYAHFH 638 >UniRef50_B9KY82 Excinuclease ABC, C subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY82_THERP Length = 625 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 243/617 (39%), Positives = 353/617 (57%), Gaps = 30/617 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQ 65 + L + PGVY M DA G VIYVGKA L++RL SYF S+ + KT LV+QI Sbjct: 17 IQERLAALEPAPGVYLMKDAQGRVIYVGKASSLRQRLRSYFSSHSSMDAKTRELVSQIAD 76 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +V T T TEAL+LE+ IK Y+PR+N++LRDDK+YPFI ++ + PR+ R Sbjct: 77 FEVIRTDTPTEALILENELIKRYRPRFNIMLRDDKTYPFIRITNEPFPRVIATRRIVRDG 136 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+P+ AV TL LL+++FP R C+ + SR CL Y IGRC GPC+ G VS+ Sbjct: 137 SRYFGPYPSAGAVHRTLDLLKRLFPYRACDIEITGTASRACLYYHIGRCAGPCI-GAVSQ 195 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-F 244 EEY ++ V LFL G+ + V+ +L + ME A++ LEFE AARIRD+++A++ V ++Q Sbjct: 196 EEYRGIIDNVVLFLEGRAEAVVARLQAAMEEAAERLEFERAARIRDELRAIQHVLQQQKI 255 Query: 245 VSNTGDDLDVIGVAFD-AGMACVHVLFIRQGKVLGSRSYFPKVPG-GTELSEVVETFVGQ 302 V+ T + DV+ VA G ACV + F+R GK+LGS Y ++ +FV Q Sbjct: 256 VTGTDESFDVLAVAQSAGGDACVQIGFVRNGKLLGSEHYLMVGARIDDPPGAILTSFVQQ 315 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y Q S T+P E++L L D +A L+ + + G R +++ +A Sbjct: 316 YYAQAS---TVPPELVLQHPLDDGETIAAWLAARRDGPVRLTVPDDGFRRELVEMIAKSA 372 Query: 363 ATALTSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 L + QR L LA L + + R+ECFD+S G VAS VVF+ Sbjct: 373 VQNLEQHRVRWLNDEQRTTLALEELADALGMDRLPRRIECFDVSQLQGTNVVASMVVFEH 432 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID------DSKIPDVILIDGGKGQ 471 P +++YR++ I + DDYAA+ + + RRY +A+ +PD++LIDGGKGQ Sbjct: 433 GKPKKSDYRKFQIKTVEGQDDYAALREAVLRRYRRALSAEQTEAWQALPDLVLIDGGKGQ 492 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L+ A+ EL + + +AK E L+ + E LP DS AL ++Q Sbjct: 493 LSAAREALVELGLDL-----PIAALAKE------HEELYIPDQSEPIVLPRDSQALFLVQ 541 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H A+ HR +R + S L+ I G+GP+RR+ LL+ G ++G+R AS+EEIA Sbjct: 542 RVRDEAHRFAVTFHRARRTRSTIRSLLDEIPGIGPRRRRELLRRFGSVEGIRQASIEEIA 601 Query: 592 KVPGISQGLAEKIFWSL 608 VPGIS+ LAE+I L Sbjct: 602 AVPGISRALAERIKKEL 618 >UniRef50_C9LR57 Excinuclease ABC subunit C n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR57_9FIRM Length = 625 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 214/612 (34%), Positives = 335/612 (54%), Gaps = 27/612 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQ 65 +A + + PGVYR D G VIYVGKA +LK R+ SY R + S K A++ Sbjct: 8 IRAKVDALPDSPGVYRWKDKDGRVIYVGKAVNLKNRVRSYLREDKNRSPKVAAMIRHAAD 67 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK-H 123 +D+T+T TE EAL+LE N IK P+YN+ LRDDKSYP++ ++ + PR+ + R + Sbjct: 68 LDITMTATEMEALILECNLIKELHPKYNISLRDDKSYPYVKITVNEKWPRILVTRNIRRD 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +YFGPF + ++R+TL+L+++++PIR C + SRPCLQY + C PC Sbjct: 128 DGAKYFGPFTDVGSLRKTLSLIRRLYPIRTCRSM---KVSRPCLQYHMNLCCAPCW-NHC 183 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +EE+Y + V GK+ +++ L ME+AS+ + FE AA +RDQ+ AV+ V ++Q Sbjct: 184 TEEQYHEYVVKTCDLFEGKNTELVKALQKDMESASEEMNFERAAVLRDQLHAVQSVQQRQ 243 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + + D DV+G++ A + + +IR GK++G + +++ F+ F Sbjct: 244 NIVSKEGDFDVVGMSRLDEHAGLEIFYIRYGKMVGKENLSIPDSLHETDEDIIAAFIKNF 303 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y G+ ++P EI+L + LL LS+L + + RG + R +A++NAA Sbjct: 304 Y--GANPSSVPKEIILPILPQESLLLTAWLSKLRNGDVKIYVPERGFKRRLKDMAQSNAA 361 Query: 364 TALTSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 L K Q R + L +L LP++ R+ECFDISH G +T S VVF++ Sbjct: 362 KYLADKKLQWEYQDAREQGAVNKLKELLHLPKLPERIECFDISHNQGAETTGSMVVFESG 421 Query: 419 GPLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P + EYRR+ + DD+ +M +V+ RRYG + PD+I++DGGKGQL A Sbjct: 422 RPNKKEYRRFKLQSTQGTPDDFKSMAEVMARRYGIETKWPR-PDLIVLDGGKGQLDAALP 480 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V + ++G+AK +E ++ E + + + P PAL ++Q IRDE+ Sbjct: 481 VIRSCGIDT-----PVIGLAK------RMEEIYVEGQTDPIIIDPHEPALQLLQFIRDEA 529 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H I HRK K S L+ I G+GP+RR L L +RNA+VEE+ +V G++ Sbjct: 530 HRFVITYHRKWTTKRNTESILDHIAGIGPQRRNALWHAFRSLDEMRNATVEELTRVKGMN 589 Query: 598 QGLAEKIFWSLK 609 + AE +F + Sbjct: 590 KTAAENVFRFFR 601 >UniRef50_A0QWV6 UvrABC system protein C n=27 Tax=Actinomycetales RepID=UVRC_MYCS2 Length = 706 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 222/659 (33%), Positives = 344/659 (52%), Gaps = 62/659 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D + ++ +PGVYR D G VIYVGKAK L+ RL+SYF + +T + Sbjct: 1 MPDPATYRPAPGSIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADITSLAPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+N+IK + PR+NV RDDKSYP + ++ + +PRL ++ Sbjct: 61 VMTAGSVEWTVVTTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLMVY 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL LL ++FP R C V++ RPCL I +C Sbjct: 121 RGPRRKGVRYFGPYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS E++ Q V FL GK D++ + +M A++ L+FE AAR+RD I A Sbjct: 181 APCV-GRVSAEQHRQIVLDFCDFLGGKTDRLAKDMEQQMTAAAEQLDFERAARLRDDISA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG----- 289 ++R EKQ V G D DV+ A D A V V +R G+V G R + + Sbjct: 240 LKRALEKQAVVFGDGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSSEPAATG 299 Query: 290 ------TELSEVVETFVGQFYLQGSQM------------RTLPGEILLDFNLSDKTLLAD 331 + ++VE F+ QFY + +++ +P ++L+ + LA Sbjct: 300 DADLGQSGQEQLVEQFLTQFYGEQAELGSASDTGGDEATNPVPRQVLVPVLPPNADELAT 359 Query: 332 SLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVL 387 LS L G +++++ RGD+ + + NA AL ++ + + L ++ L Sbjct: 360 WLSGLRGSRVSLRVPVRGDKRALAETVQRNAQEALAQHKLKRAGDFNARSEALQSIQEAL 419 Query: 388 KLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMN 443 L + R+EC DISH G VAS VVF+ P +++YR Y I DD A++ Sbjct: 420 GLADAPLRIECVDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIA 479 Query: 444 QVLRRRYGKAIDDSKI--------------PDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 +V RRR+ + DS+ P++ ++DGG Q+ A V +L V + Sbjct: 480 EVTRRRFLRHTSDSQPDPSAEQRPRRFAYPPNLFVVDGGAPQVNAAAAVLEDLGV----D 535 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 ++G+AK LE ++ E + LP +S L+++Q +RDE+H AI HR KR Sbjct: 536 DVAVIGLAK------RLEEVWVPSEPDPVILPRNSEGLYLLQRVRDEAHRFAISYHRSKR 589 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 +K S+L+++ G+G RR+ L+ + G + L+ A+V+EI VPGI A + +L Sbjct: 590 SKRMTASALDSVRGLGEHRRKALVAHFGSVARLKEATVDEITAVPGIGVATARAVQEAL 648 >UniRef50_Q1LKN9 UvrABC system protein C n=32 Tax=Proteobacteria RepID=UVRC_RALME Length = 673 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 293/656 (44%), Positives = 395/656 (60%), Gaps = 61/656 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD + L + PGVYR +DA G ++YVGKA+DLKKR+SSYF S + +VA+I Sbjct: 28 FDPRPILARMPGLPGVYRYFDADGNILYVGKARDLKKRVSSYFNKTQLSPRIAMMVAKIA 87 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +ID TV TE EALLLE+N IK PRYN+L RDDKSYPF+ L+G PR+A +RGA Sbjct: 88 RIDTTVVRTEAEALLLENNLIKALAPRYNILFRDDKSYPFLRLTGHKFPRMAYYRGATDR 147 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 K +YFGPFP+ +AVRE++ +LQK+F +R CE++V+ NR+RPCL +QI RC GPCV G +S Sbjct: 148 KHQYFGPFPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCV-GAIS 206 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E++YA+ V FL G++ +VL L S+ME + LEFE+AA +RDQI A+ V ++Q Sbjct: 207 EDDYARDVSNAARFLQGRETEVLEGLQSKMEAHAVQLEFEQAAAVRDQIAALSTVLKRQA 266 Query: 245 VSNTG--DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP------------------ 284 V G D+D++ VA G ACV++ +R G+ LG ++YFP Sbjct: 267 VEEVGQARDIDILAVAVQGGRACVNLAMVRGGRHLGDKAYFPAHVDEAAMIVEEGDEADG 326 Query: 285 -----------KVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSL 333 ++P + V+ F+ Q YL + P I++ + + L ++L Sbjct: 327 SAHEGAAADTDQLPIDRIAARVLSAFMVQHYLDQA-----PPPIVVVSHRPADSALVEAL 381 Query: 334 SELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP--- 390 S AGRKI + +P+G R +L++A A AL +L++Q + R ALA + L Sbjct: 382 SMQAGRKITLVRQPQGQRKTWLEMAAQGAGLALARRLAEQGSQEARTRALAETIGLDLED 441 Query: 391 -EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRR 449 R+ECFDISHT GE T ASCVVF + +EYRRYNI ITPGDDYAAM QVL RR Sbjct: 442 LATLRIECFDISHTAGEATQASCVVFHHHEMQNSEYRRYNIADITPGDDYAAMRQVLTRR 501 Query: 450 YGKAIDD----------------SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 Y K ++ ++P V+LIDGGKGQ+ A+ VF EL + LL Sbjct: 502 YQKLVEQLQEAGGDPAGDGGDGVPRMPRVVLIDGGKGQVEVARQVFEELGLDIG----LL 557 Query: 494 LGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 +GVAKG RK GLETL F L S AL ++ IRDE+H AI G R +RAK + Sbjct: 558 VGVAKGEGRKVGLETLVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKAR 617 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 TS LE IEGVG +RRQ LL GGL+G+ AS++E+A V GIS+ LAE+I+ L Sbjct: 618 TTSRLEEIEGVGARRRQKLLTRFGGLRGVMAASIDELASVEGISRTLAEEIYRQLH 673 >UniRef50_UPI000050F72E excinuclease ABC subunit C n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F72E Length = 619 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 215/629 (34%), Positives = 331/629 (52%), Gaps = 33/629 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M+D + ++ + GVY+ D VIYVGKAK+L+ RL+SYF +T + Sbjct: 1 MADPASYRPATGSIPTSAGVYKFRDPDRRVIYVGKAKNLRNRLNSYFSNPAQLHPRTSTM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE +I + PR+NV+ RDDKSYP++ ++ D PR + Sbjct: 61 VHTAASVEWTVVDTEVEALQLEWTWINEFNPRFNVMFRDDKSYPYLAITMNDEVPRAFIT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + +YFGPF +A+++TL LL + FP+R C VYR RPCL I +C Sbjct: 121 RGKRRKGVKYFGPFAQVWAIKDTLDLLLRAFPMRTCTAGVYRRAERSGRPCLLGYIDKCA 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +S E + + F+SG + ++ M +A++ L++E AAR+RD+I A Sbjct: 181 APCV-GQISVEGHKDLARSISDFMSGNTGRFISYRQKEMASAAEELDYERAARLRDEITA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +++V +K V + D DV + + A V V +RQG++ G R + + +E Sbjct: 240 LQKVLDKSAVVLSVNADCDVFALVTEELEASVQVFHVRQGRIRGQRGWIIERSDDHSPAE 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 + ++ Q Y G +P EIL+D +D L LSE G ++ V+ RG++ Sbjct: 300 LTTDYLRQAYT-GLDADAIPREILVDTVPADIESLESWLSEQRGSRVTVRVPERGEKKAV 358 Query: 355 LKLARTNAATAL-TSKLSQQSTVHQR---LTALASVLKLPEVK-RMECFDISHTMGEQTV 409 L+ NA AL KL + S + R L + L LPE R+EC DISHT G V Sbjct: 359 LETVAKNAKEALLQHKLKRSSDLTTRSTALKEIQEYLSLPEAPLRIECIDISHTQGSNVV 418 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKI 459 AS VVF+ + +YR + I G DD A+M V+ RR+ + ++ Sbjct: 419 ASLVVFEDGLVKKRDYRHFAIHGEAATDDTASMYDVVSRRFSRYLEQMSSDEPDERFGYR 478 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 P ++++DG Q+A A +L + ++G+AK LE ++ + Sbjct: 479 PSLLVVDGAGPQVAAATRALHDLGI----VDISVVGLAK------RLEEVWVPEDPFPVI 528 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 LP +S L ++Q +RDE+H AI HR KRAK +S L+ I G+G +R LL++ G + Sbjct: 529 LPRNSEGLFLMQRLRDEAHRFAISYHRSKRAKAMTSSVLDDISGLGESKRTALLRHFGSV 588 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + +R AS+EE+ +V GI Q LAEK+ +L Sbjct: 589 KKVRAASIEELCEVKGIGQALAEKVAAAL 617 >UniRef50_C0ZZE8 UvrABC system protein C n=14 Tax=Actinomycetales RepID=UVRC_RHOE4 Length = 730 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 226/676 (33%), Positives = 349/676 (51%), Gaps = 79/676 (11%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D + T+ + PGVY+ D G VIYVGKAK L+ RL+SYF +T + Sbjct: 1 MPDPSTYRPATGTIPAAPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVTTLHPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+N+IK + PR+NV RDDK+YP + ++ + PRL ++ Sbjct: 61 VTTAGSVEWTVVSTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLFVY 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL LL ++FP R C + V++ RPCL I +C Sbjct: 121 RGPRRKGVRYFGPYSHAWAIRETLDLLLRVFPARTCSSGVFKRHNQIGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS EE+ Q VE FL+G+ D+++ L RM+ AS++L+FE AAR+RD I A Sbjct: 181 APCV-GRVSAEEHRQIVEDFCDFLAGRTDKLVKDLEKRMQQASEDLDFETAARLRDDIGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG----- 289 +R+ EKQ V G D D++ A D A V V +R G+V G R + + G Sbjct: 240 LRKALEKQAVVLGDGTDADLVAFATDDLEAAVQVFHVRGGRVRGQRGWVVEKAGDAIDWA 299 Query: 290 -----TELSEVVETFVGQFYLQGSQMRT----------LPGEILLDFNLSDKTLLADSLS 334 ++L +VE F+ QFY + + + +P E+L+ ++ T + LS Sbjct: 300 ALDAESDLPILVEQFLTQFYGEQAALDPGAGSEAGISAVPKEVLVPVLPANATEIQAWLS 359 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLP 390 +L G ++ ++ RGD+ + + NA AL ++ ++ L + L L Sbjct: 360 KLRGSQVQLRVPQRGDKKDLAETVQRNAKEALAQHKLKRAGDFTSRSAALQGIQEALDLD 419 Query: 391 EVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVL 446 R+EC DISH G VAS VVF+ P +++YR Y I DD A++ ++ Sbjct: 420 SAPLRIECIDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGHSDDVASIAEIT 479 Query: 447 RRRYGKAIDD----------------------------------SKIPDVILIDGGKGQL 472 RRR+ + D + P++ ++DGG Q+ Sbjct: 480 RRRFIRHNRDLGILAASASTMDADGGDLAPEAAIDPATGRPRRFAYPPNLFVVDGGAPQV 539 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A V EL V+ ++G+AK LE ++ E + LP S +L+++Q Sbjct: 540 TAAAAVLDELGVT----DVAVVGLAK------RLEEVWVPGEEDPVILPRTSESLYLLQR 589 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H AI HR KR++ S+L++++G+G RR L+ + G + L+ A+VEEI + Sbjct: 590 IRDEAHRFAITFHRSKRSRRMTASALDSVKGLGETRRTALVAHFGSVAKLKTATVEEIMQ 649 Query: 593 VPGISQGLAEKIFWSL 608 VPGI + A + +L Sbjct: 650 VPGIGETTATAVLAAL 665 >UniRef50_Q2JCI3 UvrABC system protein C n=12 Tax=Actinomycetales RepID=UVRC_FRASC Length = 705 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 230/683 (33%), Positives = 342/683 (50%), Gaps = 82/683 (12%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF + +T+ + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFAELHTLHPRTQHM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V+ +D TV TE EAL LE+ +IK + PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VSSASSVDWTVVSTEVEALQLEYTWIKQFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSGGVFKRAAQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V + + VE F+SG+ + L +L M+ A+Q E+E AAR+RD I A Sbjct: 181 APCV-GRVDAATHREIVEDFCDFMSGQTGRYLRRLEREMQQAAQAQEYERAARLRDDIGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DVI A D A V V ++R G+V G R + ++ Sbjct: 240 LRRAVEKQAVVLPDGTDADVIAFAEDELEAAVAVFYVRGGRVRGQRGWVVDKLDEVTTAD 299 Query: 295 VVETFVGQFYLQ-------------------GSQMRTLPGEILLDFNLSDKTLLADSLSE 335 +VE F+ Q YL GSQ +P EIL+ D + + L Sbjct: 300 LVEQFLTQEYLDGTGAASTGTAGSTVPTTTAGSQGEGIPREILVPALPPDVEAVTELLGA 359 Query: 336 LAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQST----VHQRLTALASVLKLPE 391 G ++ V+ RGD+ L+ NA A +++++ + L L L+LP+ Sbjct: 360 ARGSRVEVRVPRRGDKRTLLETVERNAKQAFALHRTKRASDLTARSRALAELQEALELPD 419 Query: 392 VK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---------GDDYAA 441 R+ECFD+S+T G VAS VVF+ P ++EYRR+ I GI GDD A+ Sbjct: 420 APLRIECFDVSNTQGTNVVASMVVFEDGLPRKSEYRRFAIRGIAGREGAGREGAGDDVAS 479 Query: 442 MNQVLRRRYGKAIDDSK------------------------------------IPDVILI 465 M + + RR+ + + + P+++++ Sbjct: 480 MYETIHRRFSRYLAERSRIADIADIAELGDIAGAPGAAQPIDPGTGRPRRFAYPPNLVVV 539 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGG Q+A A EL + L G+AK LE ++ + LP S Sbjct: 540 DGGAPQVAAAARALDELGIDAGPGGVALCGLAK------RLEEVWLPDTADPVILPRTSE 593 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 AL+++Q +RDE+H AI HR+KR+ S+L+ + G+G RR+ LL++ G + +R A Sbjct: 594 ALYLLQRVRDEAHRFAIAYHRQKRSTAMVASALDEVPGLGDTRRKALLRHFGSVAKIRAA 653 Query: 586 SVEEIAKVPGISQGLAEKIFWSL 608 S E+IA+V GI A I +L Sbjct: 654 SAEQIAQVSGIGPRTAAAIVTAL 676 >UniRef50_A9KSS0 UvrABC system protein C n=59 Tax=Firmicutes RepID=UVRC_CLOPH Length = 628 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 218/630 (34%), Positives = 349/630 (55%), Gaps = 38/630 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQI 63 FD LK + ++PGVY M++ +IYVGKA LK R+ YF+S+ S K + +V+ I Sbjct: 2 FDLDEELKKLPAKPGVYIMHNNKDEIIYVGKAISLKNRVRQYFQSSRNLSTKIQQMVSNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + +E EAL+LE N IK ++P+YN +L+DDKSYP+I ++ + +PR+ R K Sbjct: 62 DHFEYIIVDSEMEALVLECNLIKEHRPKYNTMLKDDKSYPYIKVTVNEAYPRVLFARQQK 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS--RPCLQYQIGRCLGPCVE 180 K +YFGP+ + AV++ L LL++++ IR C ++ ++ RPCL Y I +C PC + Sbjct: 122 KDKAKYFGPYTSLGAVKDILDLLRRLYFIRTCNRNLPKDIGLERPCLYYHIKQCKAPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G +SEEEY + ++ V FL+G V L ++M+ AS+NLEFEEAA RD I +V +++ Sbjct: 181 GYISEEEYRKSIDEVIEFLNGNYALVTKDLQAKMKAASENLEFEEAAGYRDLILSVEKLS 240 Query: 241 EKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +KQ S+ G D D+I A A V FIR GK+LG Y S ++ F Sbjct: 241 QKQKASDVDGVDRDIIAFASTGDEAVAQVFFIRDGKMLGREHYHITGVANESRSSIMTNF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 V QFY + +P E+LL L ++ L+++ LS G+K+ + +GD+ R ++LA Sbjct: 301 VKQFY---AGTPYIPRELLLSEPLEEEELISEWLSTKRGQKVRIHVPKKGDKERLVELAE 357 Query: 360 TNAATALTSKLSQQSTVHQRL----TALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA+ L + + +A +L LP + RME FDIS+T G ++V S VV+ Sbjct: 358 KNASLVLQQDSDKIQREEAKTIGAVRHIADMLSLPGIYRMESFDISNTNGFESVGSMVVY 417 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------------I 459 + P R +YR++ I + DDYA+M +VL RR+ +++ Sbjct: 418 ENGKPKRNDYRKFKIKSVQGPDDYASMREVLTRRFSHGQKEAEELAKKNIDISHGSFTRY 477 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD+IL+DGG+GQ+ A V EL ++ + G+ K + + L+F + Sbjct: 478 PDLILMDGGRGQVNIALEVMNELKLT-----IPVCGMVKDDNHRTRG--LYF--DNVEIP 528 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 + S A +I I+DE+H AI HR R+K + S L+ I+GVG RR+ L+K+ + Sbjct: 529 IDTHSEAFRLITRIQDETHRFAIEYHRSLRSKAQVHSILDDIDGVGQTRRRALMKHFASI 588 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ AS+E++ VP +++ A K++ Sbjct: 589 DAIKAASMEDLMAVPSMNKLSAAKVYEFFH 618 >UniRef50_Q3ZYA3 UvrABC system protein C n=5 Tax=Dehalococcoides RepID=UVRC_DEHSC Length = 607 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 220/622 (35%), Positives = 345/622 (55%), Gaps = 29/622 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M ++ + + ++ PGVY M +A G +IYVGKA LK R+ SYF + + KT L Sbjct: 1 MPNE-TLQNQIASLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLTPKTCQL 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V+QI +++ +T +E EAL+LE N IK ++P +NV L+DDK +P++ ++ + PR+ + Sbjct: 60 VSQINELEYLITGSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYIT 119 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R G YFGPF N +VR TL +L+++F R C + SRPCL+Y I +CL PC Sbjct: 120 RSMADDGGRYFGPFANTRSVRHTLQVLKELFRFRSCNRTEPEKHSRPCLEYDIHQCLSPC 179 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G +S+ +Y + LFL GK DQVL LI M AS L++E AA RDQI +++ Sbjct: 180 T-GKISKSDYDHLISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKE 238 Query: 239 VTE-KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 V E +Q + + D I A + ++ V V FIR+GK++G S+ + + +++ Sbjct: 239 VIEGQQLAARVTGEQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILS 298 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 F QFY +Q +P +I+ + +SD+ +L LS+ G K+++ RG + + Sbjct: 299 EFAKQFYHSSTQ---IPPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPKELINI 355 Query: 358 ARTNAATALTS----KLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASC 412 NA L LS T+ L L + L L +R+E +DIS+ G V S Sbjct: 356 VAENAREQLKQARIKNLSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSM 415 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS------KIPDVILID 466 VVF+ P +A YRR+ I + DD++ + +V+ RR+G+ + ++P ++LID Sbjct: 416 VVFENGKPQKAHYRRFRIKTVKGADDFSMLKEVISRRFGRVHREDAGESFARLPSLMLID 475 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ K +L + ++G+AK E ++ + E L +SPA Sbjct: 476 GGKGQLSSVKETLDKLGLEGQ----AVIGLAKE------FEEIYLPHKSEPIRLAANSPA 525 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L ++Q +RDE+H A+G H R K TS+L+ I GVGP RR++L+K G + G+R AS Sbjct: 526 LQLLQRVRDEAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQAS 585 Query: 587 VEEIAKVPGISQGLAEKIFWSL 608 E++++V GI+Q LA I L Sbjct: 586 FEKLSQVKGINQALALSIKELL 607 >UniRef50_Q2NGT2 UvrABC system protein C n=4 Tax=Methanobacteriaceae RepID=UVRC_METST Length = 598 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 220/612 (35%), Positives = 324/612 (52%), Gaps = 37/612 (6%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVAQIQQIDVT 69 V +PGVY M++ VIYVGKAK LK RL SYFR KT+ L+ + Sbjct: 7 DEVPQKPGVYIMHNKEDEVIYVGKAKKLKSRLQSYFRDEDKLDRPKTQFLMRHFSYFEYI 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 +T+TE EAL+LE N IK Y+P YN+ L+D K YP+I ++ + PR+ + R + K Y+ Sbjct: 67 LTNTEKEALILEANLIKKYRPHYNISLKDGKQYPYIKITNEDFPRIYITRNIVNDKASYY 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+ + R + L K F IR C ++ PCL YQI +C PCV +S+EEY Sbjct: 127 GPYTDSTHARAFIDFLNKNFQIRTC-----KHMDGPCLNYQIKQCSAPCV-NYISQEEYN 180 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + + V+L L GK + +L M ++N+EFE+AA +RDQI ++ EKQ + Sbjct: 181 RNIRRVKLLLQGKYKTTIKKLKKDMNRYAKNMEFEKAAMLRDQIDTIKITLEKQNIQPNQ 240 Query: 250 D-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D + D+IG + A V +L +R GK K G ++ F+ Q+Y Sbjct: 241 DVNQDIIGFDHNNEEAAVVILSVRSGKTNKKDDLVLKGIKGFSDKQIRTEFIKQYY---- 296 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 LP EI+L+ ++ DK ++ + L E A KI + G +K+A+ NA +LT Sbjct: 297 STAPLPDEIILEDDIEDKDVIVEWLEEKANHKIKITVATDGHYITLIKIAKKNAHISLTE 356 Query: 369 KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 ++ L L L LP + +E FDIS+ G VAS VVF+ P + YR+ Sbjct: 357 NTKEEENP---LLTLEKYLNLPRLPYHIEAFDISNISGIYAVASMVVFENGKPAKKMYRK 413 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKI---------PDVILIDGGKGQLAQAKNV 478 + + +D+A M +V+ RRY ++ PD++LIDGGKGQL A +V Sbjct: 414 FKMNT-PGPNDFAMMKEVITRRYSHISPNNTNNTSDSLSIHPDLVLIDGGKGQLGMAVDV 472 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 F +L+++ L G+AK E ++ + LP S ALH++Q++RDESH Sbjct: 473 FKKLNIT----DVPLAGLAKK------FEEVYLPGQTNPIILPRQSSALHLLQYVRDESH 522 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HRK R+K S L+ I GVG KR+Q LL + L + NAS +EI +V GI+Q Sbjct: 523 RFAITFHRKLRSKAFTKSILDDIPGVGKKRKQALLTHFESLDNIYNASFDEICQVKGINQ 582 Query: 599 GLAEKIFWSLKH 610 LA+ I+ +LK Sbjct: 583 KLAKTIYETLKE 594 >UniRef50_Q180Q8 UvrABC system protein C n=8 Tax=Clostridiales RepID=UVRC_CLOD6 Length = 605 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 202/617 (32%), Positives = 343/617 (55%), Gaps = 29/617 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQI 63 FD + LK + S+PGVY M D +IYVGKA LK R+ YF+S+ + K +++V I Sbjct: 2 FDIQEHLKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + +T +E EAL+LE N IK Y+P+YNV+LRDDK+YP+I ++ + +PR+ R Sbjct: 62 YKFEYIITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVL 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR---NRSRPCLQYQIGRCLGPCV 179 K +YFGP+ N AV +TL L+ +PIR C+ + + N++RPCL I +CLGPC Sbjct: 122 KDKAKYFGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCT 181 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G VS+EEY + +E + + LSGK+++++ L +M +S N FEEAA RD+I+++ + Sbjct: 182 -GNVSKEEYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEM 240 Query: 240 TEKQFVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 +KQ + T DL DV+ +A ACV V FIR GK++G + + + + ++ Sbjct: 241 IQKQKIDATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILS 300 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 +FV QFY + +P E++++ + D ++L + LS G+K+ ++ +G++ +++ Sbjct: 301 SFVKQFYNEQ---EYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEM 357 Query: 358 ARTNAATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASC 412 R NA L + L L +L L ++ R+E +DIS+ G ++ S Sbjct: 358 VRKNAVEYLEKFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSM 417 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 VV+ + EYRRY I + +DY +M +++ RR + +PD+IL+DGGKGQ+ Sbjct: 418 VVYTNAKKDKKEYRRYKIKTVIGPNDYDSMAEIVDRR----LKHGNLPDLILLDGGKGQV 473 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + K V + L G+ K + + + L + I Sbjct: 474 SAVKKVLE-----LNDVDIPLWGMYKDDKHRTKG----LICKEKEIELDKTTNLYRFIAS 524 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 I++E H++AI HR R K S L+ I+G+G KR++ LL + + ++ A++EE+ + Sbjct: 525 IQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVDAIKKATMEELLE 584 Query: 593 VPGISQGLAEKIFWSLK 609 V G+++ +A+ ++ + Sbjct: 585 VDGMNKSIADNVYNFFR 601 >UniRef50_Q12W02 UvrABC system protein C n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=UVRC_METBU Length = 604 Score = 661 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 217/611 (35%), Positives = 325/611 (53%), Gaps = 26/611 (4%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQI 66 + + + PGVY M D +IY+GKAK LKKR+S YF+S+ S KT A+V +I + Sbjct: 2 RPDISNIPELPGVYLMKDISDNIIYIGKAKSLKKRVSQYFQSSKNHSSKTRAMVRKIADV 61 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D VT +E AL+LE N +K +P YN+ L+DDK YP++ ++ P++ + R Sbjct: 62 DYIVTESEVAALILEANLVKKNRPHYNIDLKDDKRYPYVKVTVNTKFPKIFITRRRLMDG 121 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+ N VR+TL ++ +IF I++C V R CL Y I RC PC G ++ Sbjct: 122 ALYFGPYTNVKPVRQTLDMISQIFRIKRCNRRVDGKGKRACLNYHIDRCYAPC-NGSITP 180 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EEY V G+ + +L +M + E+E AA IRDQI A++ ++ +Q Sbjct: 181 EEYRNNVMEAVKLFKGETSGTIKELQEKMNIHAIAQEYESAAVIRDQIDALKSLSRQQTA 240 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT-ELSEVVETFVGQFY 304 + DD D+I A D V + +IR G ++G T ++ V E F+ Q+Y Sbjct: 241 TAGNDDSDIIATASDDETVFVQIFYIRDGNMVGKADMSLSWGDATGNIARVTEEFIKQYY 300 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 +P EIL+ + + +K L+ LSE A R + +Q RG++ R +++A NA Sbjct: 301 QDA----PVPPEILVQYPIPEKELVIKWLSEKAARSVQIQVPQRGNKKRLMEMAEQNAQM 356 Query: 365 ALTSKLSQQSTVHQRLTAL---ASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 L +QS Q L AL L L + +E FDIS+ G V S VVF+ P Sbjct: 357 TLEQSHLKQSDKEQALQALLQLRDALALSTLPAHIEGFDISNISGTDAVGSMVVFENGLP 416 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVF 479 ++YR +NI + DD+A M +V++RRY + K+PD+ILIDGG GQ++ A Sbjct: 417 ANSKYRHFNIKTVKGIDDFAMMAEVVKRRYTHQKAEKDKLPDLILIDGGPGQVSAAMGSL 476 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG--EGFSLPPDSPALHVIQHIRDES 537 EL + L+G+AK E + +G E LP S AL V+ +RDES Sbjct: 477 KELQL-----DIPLVGLAK------RFEHIIVPKDGTDEVVILPHTSEALKVLMRVRDES 525 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H A+ HR++R + S L+TI G+G R++ LL + ++ +R+ASVEE+ V GIS Sbjct: 526 HRFAVSSHRRRRTARLSHSELDTIPGIGASRKKALLNHFSSIEQIRHASVEELTAVEGIS 585 Query: 598 QGLAEKIFWSL 608 +GLAE+I Sbjct: 586 KGLAERIVAHF 596 >UniRef50_C6E9G2 UvrABC system protein C n=3 Tax=Geobacter RepID=UVRC_GEOSM Length = 649 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 220/613 (35%), Positives = 336/613 (54%), Gaps = 22/613 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQI 66 +A ++ S PGVY M A TVIYVGKA++LKKR+ SY SR +V + + Sbjct: 4 QAMIENFPSSPGVYLMKSADDTVIYVGKARNLKKRVRSYAGDTRDSRIHIRFMVQLVHSV 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D VT TE EAL+LE+ IK ++P+YN+ LRDDK+Y + + + PRL++ R Sbjct: 64 DYLVTDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEQFPRLSIVRKIPSDG 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+ + A +E L L K+FP+R + R RPCL +QI +C PC GL+S Sbjct: 124 ARYFGPYASATAAKEVLKQLYKMFPLRHYPLATCMARKRPCLYHQIKQCSAPCC-GLISA 182 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EYA + LFL GK+++V S+M AS+ + +E+AAR RD ++A+ E+Q + Sbjct: 183 AEYAALAQGAALFLEGKNNEVARLYRSKMNLASEQMRYEDAARYRDLLRAIEVTVERQKM 242 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D DV GV +A + +L IR G + G RS+ TE E + +F+ ++Y Sbjct: 243 VAQSGDSDVFGVHREADRMQIALLHIRGGTLTGGRSFLFDWELETE--EGLASFLNEYYD 300 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P ++L+ +++ L + LSE AG+K+ + RG + +KLA NA TA Sbjct: 301 LDA---PIPPQVLIPLPIAEPAALEELLSEKAGKKVTIAVPQRGPKLEMVKLAGKNAETA 357 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAE 424 +L+++S+ LT LA L LP R +EC+DIS+ GE V S VVF ++ Sbjct: 358 AQERLARESSSATLLTELAEKLNLPHPPRRIECYDISNIQGEMAVGSRVVFIDGRADKSL 417 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YRRY I G+ DD+A M +VL RR+ KA + PD+I++DGG GQL V EL+V Sbjct: 418 YRRYRIKGVLQSDDFAMMREVLSRRF-KADSHEEKPDLIVVDGGLGQLGVLNAVLDELEV 476 Query: 485 SWDKNHPLLLGVAKG--------ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 + + G+AK + + E +F +L S L ++ IRDE Sbjct: 477 TGVEA----AGLAKSRVARDMESEEIERSDERVFRPGRKNAIALRQSSAPLLLLVRIRDE 532 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H A+ H+ R+KV S L+ + G+G KR++ LLK+ G L+ ++ A++EE+ PG+ Sbjct: 533 AHRFAVTYHKDVRSKVLTGSELDGVAGIGEKRKKALLKHFGSLKRVKEATLEELKGAPGM 592 Query: 597 SQGLAEKIFWSLK 609 ++ A + L Sbjct: 593 TESAARALVERLH 605 >UniRef50_C5BV40 UvrABC system protein C n=16 Tax=Actinomycetales RepID=UVRC_BEUC1 Length = 693 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 225/666 (33%), Positives = 344/666 (51%), Gaps = 69/666 (10%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + + PGVYR D G V+YVGKAK L+ RLSSYF+ + +T+ + Sbjct: 1 MADPTTYRPRPGEIPDAPGVYRFRDPHGRVVYVGKAKSLRSRLSSYFQDLSALHPRTQQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+++IK + PR+NV RDDKSYP++ ++ G+ PR+ + Sbjct: 61 VTTASSVEWTVVGTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTMGEEVPRVQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RGAK YFGP+ + +A+RET+ LL ++FP+R C + VY+ RPCL I +C Sbjct: 121 RGAKRKGTRYFGPYGHAWAIRETVDLLLRVFPVRTCSSGVYKRAAASGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +S E++ E F++G+ L +L S M AS L+FE AAR+RD I A Sbjct: 181 APCV-GRISVEDHRDLAEDFCSFMAGESGVFLRRLESEMAAASAELDFERAARVRDDINA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RRV EK V G D DV +A D V V +R G+V G R + + + Sbjct: 240 LRRVVEKNAVVLADGTDADVFALAADELEVSVQVFHVRGGRVRGQRGWVTERVEDLDDGA 299 Query: 295 VVETFVGQFYLQGSQMR-------TLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKP 347 +VE + Q Y + + +P E+L+ D LA+ LS L G +++++ Sbjct: 300 LVERLLQQVYGPYATEKGPDGGATGVPREVLVPALPDDAVELAEWLSTLRGSRVSLRIPQ 359 Query: 348 RGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEVK-RMECFDISH 402 RG++ + RTNA AL +++ ++ + L+ L L L E R+EC+DIS Sbjct: 360 RGEKRALAETVRTNAQQALALHKTRRAGDLTSRSRALSELQEELGLAESPLRIECYDIST 419 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGKAIDDSK- 458 G V S VVF+ ++EYR++ + G DD AM++V+ RR+ + + Sbjct: 420 LQGTHQVGSMVVFEDGLARKSEYRQFVVRGADGQGARDDTEAMHEVITRRFRRYLAQRDV 479 Query: 459 ------------------------------------IPDVILIDGGKGQLAQAKNVFAEL 482 P+++++DGG Q+A A+ EL Sbjct: 480 GVAGGGSGEVPAEDDDGVAIAGPVDPETGRPARFAYPPNLVVVDGGPPQVAAAQRALDEL 539 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 VS L+G+AK LE ++ E LP S L+++Q +RDE+H AI Sbjct: 540 GVS----DVALVGLAK------RLEEVWLPGEEYPLVLPRASEGLYLLQRVRDEAHRFAI 589 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRK+R K S+L+ + G+GP R+ LL+ G ++ +R A+ EEIA VPG + AE Sbjct: 590 THHRKRRGKSMTRSTLDDVPGLGPSRQAALLQAFGSVRRIRAATPEEIAAVPGFGRRTAE 649 Query: 603 KIFWSL 608 ++ +L Sbjct: 650 QVLAAL 655 >UniRef50_B8I8F2 UvrABC system protein C n=2 Tax=Clostridium RepID=UVRC_CLOCE Length = 613 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 208/624 (33%), Positives = 351/624 (56%), Gaps = 33/624 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQI 63 FD + LK + + GVY M DA G VIYVGKA LK R+ YF+ S K +A+V+++ Sbjct: 2 FDIQEELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYFQQSANHPPKVQAMVSKV 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + V +E EAL+LE IK Y+P+YN+LL+DDK YP+I ++ + +PR+ R + Sbjct: 62 SEFEYIVVDSEVEALMLECTLIKKYKPKYNILLKDDKHYPYIKVTLNEEYPRILKTRRVE 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVE 180 YFGP+ +G+AV +T+ L+K+F ++ C ++ R ++RPCL Y + +CL PC + Sbjct: 122 KDGARYFGPYSSGFAVNDTIDTLKKLFSLKTCNKNLPRDIGKTRPCLNYHMKQCLAPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G V+ +EY + ++ + FL G+ D+++ L +META++ L+FE+AA++R++I ++++++ Sbjct: 181 GGVNRDEYREMMKKICRFLGGQYDEIINDLRIQMETAAEQLDFEKAAQLRNKITSIKQLS 240 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E Q V T +D D+IG + D+ C+ V F+R G+V+G + + + + TF Sbjct: 241 ESQKVLFTDLEDRDIIGYSADSTDLCIQVFFVRNGRVIGREHFIFEGEANEDKGYSLSTF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY ++++ +P EI+L + D +A L+E G K+ ++ RGD + + + Sbjct: 301 IKQFY---TKVQYVPSEIVLQSEVDDSETIAKWLTEKRGFKVALRVPQRGDLVKLVHMVS 357 Query: 360 TNAATALTSKLSQQSTV----HQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVV 414 NA L +QS + + L +L L E R+E +DIS+T + VAS VV Sbjct: 358 ENAEITLKLHRERQSREGTVHSEGMAQLVKLLGLEEAPARIESYDISNTGSSEIVASMVV 417 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKIPDVIL 464 F+ P R EYR++ + I +DY +M + L RR +A + SK+PD+IL Sbjct: 418 FENGRPARQEYRKFKMKSIEQQNDYGSMQETLFRRLNRAKREKEEGTENAKFSKLPDLIL 477 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGG + A+ V EL ++ + G+AK + G + L + Sbjct: 478 VDGGSNHVNAARQVVEELGYNFK-----IAGMAKDDRHRTKS----LVYMGNEYELATNM 528 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 P L I I+DE+H A+ +RK R K S L+ IEG+G R++ L+K+ + +R Sbjct: 529 PLLRFITEIQDETHRVAVEYNRKLREKRYVRSELDEIEGIGQTRKKALIKHFKSVAAIRK 588 Query: 585 ASVEEIAKVPGISQGLAEKIFWSL 608 A + ++ +V GIS+ +A+ I+ Sbjct: 589 ADIAQLQEVNGISEKIAKNIYEYF 612 >UniRef50_UPI00017881F9 excinuclease ABC, C subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017881F9 Length = 667 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 226/669 (33%), Positives = 343/669 (51%), Gaps = 81/669 (12%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 Q + + L + QPG Y M + GT+IYVGKAK LK R+ SYF + + KT+ LV++I Sbjct: 15 QENIRHKLALLPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEI 73 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 + + VT + EAL+LE N IK +QPR+NVLL+DDK+YP++ ++ + HPRL + R Sbjct: 74 RDFEYIVTGSNMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEEHPRLEVTRRVLK 133 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K +YFGP+PN YA ++T LL +++P+R+C CL Y +G+CL PCV+ V Sbjct: 134 DKAKYFGPYPNAYAAQQTKKLLDRMYPLRKCGVMP----KEVCLYYHMGQCLAPCVK-EV 188 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + Y Q + FLSG +++ +L +M+ A+++L FE A +RDQI + + EKQ Sbjct: 189 PKSAYEQITGEITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQ 248 Query: 244 FVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGS-RSYFPKVPGGTELSEVVETFVG 301 ++ T D DV G A D G CV +L++RQGK++ +S FP +F+ Sbjct: 249 KITTTDTRDRDVFGYAVDKGWMCVQILYMRQGKMVQRNKSVFPFYGDAHSD---FMSFIA 305 Query: 302 QFYLQGS---QMRTLPGEILLDFNLS---------------------------------- 324 Q+Y Q LPG +L + S Sbjct: 306 QYYSDNPALPQEILLPGPLLAEEAGSETATGSAGEQGARNAGEAAETEKKLTTDISEEQH 365 Query: 325 -----------------DKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 D A +L E G + V RG + + + +A NA +L Sbjct: 366 EVLVQAQAEQAEAAGLVDAAGGAAALQEWLG--VKVHVPQRGLKKQMVGMASDNAKVSLD 423 Query: 368 SKLSQQSTVHQRL----TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 K +R L V+ L + R+E FD S+ G V++ VVF P + Sbjct: 424 EKFRLIERDEERTSVAAANLGEVIGLQSLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKK 483 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA-E 481 EYR+Y I + DDY M +V+RRRY + + ++ +PD+I++DGGKGQ++ A +V E Sbjct: 484 EYRKYKIRTVQGPDDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENE 543 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 L + + G+ K A K L E SLP DS +++Q I+DE H A Sbjct: 544 LGL-----FVPVCGLVKDAKHKTA--QLMVGDPPEPVSLPRDSQEFYLLQRIQDEVHRFA 596 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I HR++R K TS L++I G+G KRR+MLLK+ G ++ ++ ASVE+ + I + LA Sbjct: 597 ISFHREQRGKSMVTSKLDSIPGIGEKRRKMLLKHFGSVKKIKEASVEDFKPL-SIGEKLA 655 Query: 602 EKIFWSLKH 610 I +L+ Sbjct: 656 TDILNALRE 664 >UniRef50_Q4JVI8 UvrABC system protein C n=8 Tax=Corynebacterium RepID=UVRC_CORJK Length = 690 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 232/694 (33%), Positives = 344/694 (49%), Gaps = 104/694 (14%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQ 65 + ++ + PGVY DA VIYVGKAK+L+ RLS+YF+ + +T A+V Sbjct: 6 YRPEPGSIPTDPGVYTFRDAHERVIYVGKAKNLRARLSNYFQDLDQLHPRTRAMVQSANH 65 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 + TV +E EAL LE+ +IK + PR+NV+ RDDK+YP + +S + PR M+RG + Sbjct: 66 VQWTVVSSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFMYRGPRRK 125 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCLGPCVEG 181 YFGP+P +A+RETL L ++FPIR C VYR RPCL I RC PCV G Sbjct: 126 GVRYFGPYPKAWAIRETLESLTRVFPIRTCSAGVYRRHEALGRPCLLGYIDRCSAPCV-G 184 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 ++ E++ V+ FL+G + VL ++ ME AS+NL+FE AA +RDQ+QA+++ E Sbjct: 185 KITPEDHRALVDQFSSFLAGNTEPVLRRVRKEMEQASENLDFERAASLRDQLQAMQKSME 244 Query: 242 KQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q V + D D+I D A V + +R G++ G R + + ++V F+ Sbjct: 245 RQAVVFSDNTDADLIAFVADELEAAVQIFHVRGGRIHGQRGWVVER-EDLSEEKLVADFI 303 Query: 301 GQFYLQGS-----------------------------------------QMRTLPGEILL 319 QFY + + Q+ +P EIL+ Sbjct: 304 TQFYGETAELAKATETQVGGASGPEVDRDLARAINPAAAQDLGDLVGDVQVTPVPREILV 363 Query: 320 DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT-SKLSQQSTVHQ 378 D LA L+ L G + ++ RGD+ + A TNA AL KL + + Sbjct: 364 HAMPDDADDLAAWLTSLRGSNMQIRVPQRGDKKALMTTAETNATQALAQHKLKRAGDITA 423 Query: 379 R---LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGIT 434 R L L L + E R+EC DISH G VAS VVF+ P +A+YRRY I Sbjct: 424 RSAALKELQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAA 483 Query: 435 PG---DDYAAMNQVLRRRYGKAIDDSK--------------------------------- 458 DD A++ +V+RRR+ + D Sbjct: 484 GDGHSDDVASIAEVVRRRFKRYQQDKSAVPAGDDAGDLLEGETELEDNSAEGTDPATEKR 543 Query: 459 ----IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE 514 P + ++DGG Q+ A+ V EL V N L+G+AK LE ++ E Sbjct: 544 KFAYPPQLFIVDGGLPQVNAAQEVLDELGV----NDVTLVGIAK------RLEEIWVPGE 593 Query: 515 GEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLK 574 +P +SPAL+++Q++RDE+H AI HR++R+ S L+ I G+GPKRR+ L+K Sbjct: 594 EYPIIVPRNSPALYLVQNLRDEAHRFAITFHRQQRSARMRRSKLDDIPGLGPKRRKQLVK 653 Query: 575 YMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G + ++ ASVE+IA +PG LA+ I +L Sbjct: 654 EFGSVARVKEASVEDIAALPGFGPKLAQLIHDAL 687 >UniRef50_B0S0L4 UvrABC system protein C n=2 Tax=Finegoldia magna RepID=UVRC_FINM2 Length = 608 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 213/620 (34%), Positives = 340/620 (54%), Gaps = 27/620 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD K L+ V +PGVY M+D +IYVGKA DL++R+ YF S+ K A+V+ ++ Sbjct: 2 FDIKKELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVE 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 + + + E EAL+LE N IK P+YN++LRDDK YP+I ++ + PR+ R Sbjct: 62 YFEYIIVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITNEKFPRVLKTRRVLKD 121 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGL 182 K +YFGPFPN YAV + + L+ + + IR C + + + RPCL Y I RC G CV Sbjct: 122 KAKYFGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYD- 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+EE+Y +++ V FL+G++D++ +L +M AS+NL FE AA++RD I ++ + EK Sbjct: 181 VNEEDYNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSITNIQVILEK 240 Query: 243 QFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q ++NT DLD+I +A +A CV V F+R GK++ + + +V F Sbjct: 241 QNITNTKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFK 300 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 QFY+ + +P +IL D + D+ L+ + L+E G K+ ++ RG++ L++ R N Sbjct: 301 QFYID---LTYVPKQILTDIEIEDRDLIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVN 357 Query: 362 AATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 A L L ++ + L + + + R+EC+DIS+T G +V S +VF Sbjct: 358 AKEGLDKYISRHLKRERNRENAILDLQDITGVKPIDRIECYDISNTSGVDSVGSMIVFKN 417 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-------IPDVILIDGGKG 470 +YR++ I + DDYA+ +VL RR+ + +D K +P +IL+DGGKG Sbjct: 418 GAKSSKDYRKFKIKTVEGADDYASHREVLTRRFRRLLDSDKKDNSFDEMPSIILMDGGKG 477 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 Q+ AK V E ++ +LG+ K + E E L ++P ++ Sbjct: 478 QVNIAKEVLNEFNL-----DIPILGLVKDDKHRTRGIIY----ENEEIRLKVNTPLYRLL 528 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 I++E+H AI HRK K S L+ I +G KR++ L+K+ L ++ ASVEE+ Sbjct: 529 FAIQEETHRFAINYHRKLHEKNFKKSELDNIALIGEKRKKALMKHFKTLDRIKKASVEEL 588 Query: 591 AKVPGISQGLAEKIFWSLKH 610 +V G+++ AE I K Sbjct: 589 CEVDGMNEKAAENIVNYFKQ 608 >UniRef50_D1CFI6 Excinuclease ABC, C subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFI6_THET1 Length = 613 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 216/614 (35%), Positives = 332/614 (54%), Gaps = 30/614 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L+ + +PGVY M D G VIYVGKAK L+ R+ SYF S K +V QI ID V Sbjct: 14 LQAIPEKPGVYLMKDKHGKVIYVGKAKVLRNRVRSYFSSKHLPEKIREMVPQIHDIDYIV 73 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T +E EAL LE IK + P+YN + +DDK P+I ++ + PR+ R + +Y+ Sbjct: 74 TDSEHEALTLEVTLIKHHMPKYNSMFKDDKRLPYIKVTVQEEFPRVLKCRQIINDGSKYY 133 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCEN-SVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 GP+ + E + L+ + F + EN + +SRPCL Y + RCLG C G +EY Sbjct: 134 GPYTALGSAAEAIKLIHQHFMLCHKENEPIDGKQSRPCLPYYLHRCLGACA-GRADPQEY 192 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS-N 247 E V LFL GK D++ +L +ME A++NLEFE+AA R+QI+A+ + ++Q V Sbjct: 193 RAATEQVILFLEGKHDELTEKLRRKMEEAAENLEFEKAALYRNQIKAIEDIRQRQKVVLP 252 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 T +D+D+I +A D G A + LFIR G+++G ++ ++++ + QFY+ Sbjct: 253 TNEDMDIISIALDGGEAGIERLFIRDGRLVGHDHSVVELIEDQSPGQIIQIALEQFYIGT 312 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 +PG I+L + + L+ +L E R+I ++ G++ + +A NA L Sbjct: 313 YN---IPGRIVLQYPPDEIELIQSALQEYHKREIILEVPTEGEKLELVNMAAQNAKEGLE 369 Query: 368 SK----LSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 K LS++ + L L+LP + R+EC+DIS+ G V S VVF+ P R Sbjct: 370 RKRFKWLSEEQKRTGAMLELQKELQLPIKPSRIECYDISNVQGADAVGSMVVFEDGAPAR 429 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKA-------IDDSKIPDVILIDGGKGQLAQA 475 +YRR+ I G+ +D+ M +VL RR+ +A K+PD+I+IDGGKGQL A Sbjct: 430 NQYRRFRIKGVEGPNDFEMMREVLTRRFKRATSNEYRETSWGKLPDLIIIDGGKGQLGVA 489 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V + + + G+AK E LF + LP DS AL+++Q IRD Sbjct: 490 VEVLQSFGL----GNIPVFGLAKQQ------EELFKPGRSDSIMLPRDSEALYLLQRIRD 539 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI-AKVP 594 E+H A+G HR K S L+ + G+GPKR++ L++ G + +R AS++EI A V Sbjct: 540 EAHRFALGYHRSLHTKKSVGSILDQVPGIGPKRKKALIQAFGSVSKIREASIDEIMAAVK 599 Query: 595 GISQGLAEKIFWSL 608 GI + ++ +L Sbjct: 600 GIDRATVIRLKEAL 613 >UniRef50_Q6AKB8 UvrABC system protein C n=3 Tax=Deltaproteobacteria RepID=UVRC_DESPS Length = 607 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 225/610 (36%), Positives = 348/610 (57%), Gaps = 14/610 (2%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQ 62 + L++ +PGVY M DA VIYVGKAKDL KRL+SY R S+ KT ++ + Sbjct: 2 PMFPEKILQSTPHKPGVYLMLDAKARVIYVGKAKDLVKRLTSYTRHSSSEHNKTTVMLKK 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 ++Q+ +T TE EAL+LE + IK ++PRYN++LRDDK+YP+I ++ G+ PR+ M R Sbjct: 62 VEQVKTIITTTEKEALILEASLIKKHKPRYNIILRDDKNYPYIAVTVGEEWPRVMMVRRK 121 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + YFGP+ + A+ TL L+ +FP+R C R R+RPCL QIG+CL PC G Sbjct: 122 RRDNSRYFGPYSSATAMWATLKLIASLFPLRNCRGEKLRPRTRPCLNRQIGKCLAPCT-G 180 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 VS + Y + V+ + L L GK +L +L +M AS+ L FE+A + RDQI+A++ E Sbjct: 181 NVSRKIYMENVDKILLLLQGKSRDLLAELKRQMLQASERLNFEQAGQFRDQIRALKTTLE 240 Query: 242 KQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 KQ V+ G + DV G V++LF+R G V GSRS+F + G + S+V+ + Sbjct: 241 KQLVAAGHGKNQDVFGYVRSGTTVAVNILFVRDGLVSGSRSFFIEDYFGLD-SQVLSQTI 299 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y + P EILL F+ + LL++ L++ + ++ RGD +++A T Sbjct: 300 SQYY---DRETPPPKEILLPFSPENFELLSEYLADFTTHILQIKIPQRGDSTILVEMANT 356 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANG 419 NA K ++ + ++ L+L + +EC DIS+ G+ + S V F Sbjct: 357 NARQLFAEKEKKERSWQSLGKSIKEKLQLSRTPETIECLDISNISGQHAIGSLVCFSGGE 416 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 ++ +R Y I I DDY M +V+ RR+ + I + +P++ ++DGGKGQL A V Sbjct: 417 ANKSRFRHYKIRTIEGPDDYGMMREVMERRFKRGIKEGNLPNLFVVDGGKGQLGMAMAVA 476 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL ++ N +G+AK +R E L+ LP SP L + IRDESH Sbjct: 477 RELGIT---NELDWIGIAK--ERHEEGEKLYKPGRKNPILLPAHSPVLLYLMRIRDESHR 531 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 + I HRK R + +S L+ IEG+G R+++LLK +G L+ ++ AS++++ +V GI Sbjct: 532 YGITFHRKLRNRATLSSELDEIEGIGDNRKKLLLKKIGSLKKIKEASLQKLQEVEGIGPL 591 Query: 600 LAEKIFWSLK 609 LA+KI+ SL+ Sbjct: 592 LAKKIYTSLQ 601 >UniRef50_Q1Q607 Similar to uvrABC system protein C (UvrC exinuclease) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q607_9BACT Length = 610 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 226/609 (37%), Positives = 347/609 (56%), Gaps = 18/609 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK-TEALVAQIQQIDV 68 LK V PGVY M DA VIYVGKAK+LK R+ SYF+ R TE L+ + ID Sbjct: 6 KLKNVPVSPGVYLMKDAKHKVIYVGKAKNLKNRVRSYFQKGTGDRLYTEYLIKHVVDIDF 65 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGE 127 +T TE EAL+LE+N+IK ++P++N+ LRDDK++ I L + P + R + Sbjct: 66 VLTETEKEALILENNFIKQFKPKFNINLRDDKNFLCIKLETNKDFPYPKVVRQKEDDGAM 125 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGP+ + AVRETL + P+R+C ++ +++R++PCL YQI +CLGPC GL+ Sbjct: 126 YFGPYASARAVRETLRYINDTIPVRKCRDNAFKSRTKPCLYYQIHKCLGPCC-GLIDRAG 184 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y ++ V L L GK + +++ L +M S+ L +E+AA++RDQIQ++ + EKQ +++ Sbjct: 185 YKTLIDQVILLLKGKQEDLISILRKQMYEESKQLRYEKAAKLRDQIQSIEQTVEKQRINS 244 Query: 248 -TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 T D DV G + V+FIR G + SY + T + EV +F+ QFY Sbjct: 245 LTFIDRDVFGYYLTDNDVYIEVMFIRSGNMEDIASYRLSI-NHTTIEEVFRSFLNQFY-- 301 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 SQ R +P E+++ N D LL + L+E G+K++V RGD+ R +++A+ NA A Sbjct: 302 -SQTRFIPSEVIIPVNSPDAVLLEEWLTERKGKKVSVFCPKRGDKLRLIEMAQKNAMNAY 360 Query: 367 TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 +Q + L AL V+ L + R+ECFDIS+ G+Q V S V F P +++Y Sbjct: 361 KVSQTQDDNYSRTLQALKDVIGLRNLPERIECFDISNIFGKQAVGSMVTFKCGMPDKSKY 420 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 +R+ I + DDYA M++VL RRY +A+++ +PD++++DGGKGQL A VF EL + Sbjct: 421 KRFRIKTVDQIDDYAMMHEVLLRRYKRAVEEGDLPDLVMVDGGKGQLGVALRVFEELAI- 479 Query: 486 WDKNHPLLLGVAKGAD-----RKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 N LL ++K + E + LP SP L + IRDE+H Sbjct: 480 ---NDTDLLALSKDRGKSGIPKGEQGEQVHAPHIPHPILLPSSSPVLLFLAKIRDEAHRF 536 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HRK R K S L+ I G+G R++ L+K G ++G+RNA++ ++ ++ + L Sbjct: 537 AIAYHRKLRDKEYYKSPLDEIPGIGIIRKKALIKRFGSIEGIRNATINQLTEIGKLPAKL 596 Query: 601 AEKIFWSLK 609 A +++ Sbjct: 597 ANEVYNHFH 605 >UniRef50_A0LHP7 Excinuclease ABC, C subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHP7_SYNFM Length = 677 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 232/617 (37%), Positives = 340/617 (55%), Gaps = 18/617 (2%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVA 61 D + + PGVY DA G V+YVGKA DL+KR++SYF+S KT AL+ Sbjct: 64 DSPSLLSKTASFPHLPGVYLFKDASGAVLYVGKAIDLRKRIASYFKSTGPIPVKTRALMG 123 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 + ++ VT E EALLLE + IK ++PRYNV+LRDDK+YP + + + PRL + R Sbjct: 124 KAADMEYVVTSNEKEALLLEASLIKKHRPRYNVVLRDDKNYPALRIDPREPFPRLEVVRR 183 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + YFGP+ + YA+RETL LL ++FP+R C+ R RPCL Y +GRCLG C Sbjct: 184 FQRDGALYFGPYHSAYALRETLRLLHQLFPLRLCKGKRLLARERPCLNYSLGRCLGACA- 242 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G VS E+Y + V+ V LFL GK D + QL RM A++ L FE AA RD++Q + + Sbjct: 243 GRVSPEDYHKMVDEVVLFLQGKTDVLQQQLRRRMADAAEALNFELAAYYRDRLQGIASML 302 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ VS+ + DVIG+ A + +LF+R+G + G R + + G E E++ F Sbjct: 303 EKQHIVSDRFLNQDVIGLHVGEEGAELAILFVRKGTLTGQRDFDLRDAQG-EPMELLTAF 361 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY + R +P EI++ + + LL + L+EL G+++ V RGDR L++A Sbjct: 362 IQQFYRED---RYIPDEIVVPAPVEAEALLEEWLTELKGKRVRVWAARRGDRRELLEIAG 418 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 NA TS+ Q L L +LKLP RM C DIS+ G V + VVF Sbjct: 419 KNARERYTSRRKWQKRDVTMLQNLQRILKLPRAPLRMACVDISNIQGRHAVGAVVVFSEG 478 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 P + YRRY I G T DD A M +V+ R ++ D++++DGGK QL + + + Sbjct: 479 SPDKDSYRRYRIHGKTEPDDPAMMAEVIERLLKNDAPLAESLDLLVLDGGKSQLNRIRRL 538 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAG------LETLFFEPEGEGFSLPPDSPALHVIQH 532 EL + L+ +AK + G E ++ L LH++Q Sbjct: 539 MEELGAA---EGLPLISIAKEKETDRGEKGRGLYEKIYLPGRKNPLFLHHYPDILHLLQR 595 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI ++ S+L+ + GVGPKR ++L+++ G ++ LR ASVE+IA+ Sbjct: 596 LRDEAHRFAISHYKSLHRNDLLASALDAVPGVGPKRSRLLIRHFGSMKALREASVEDIAQ 655 Query: 593 VPGISQGLAEKIFWSLK 609 VPG+ +A IF L+ Sbjct: 656 VPGVPPTVARTIFNILR 672 >UniRef50_Q2LR71 UvrABC system protein C n=1 Tax=Syntrophus aciditrophicus SB RepID=UVRC_SYNAS Length = 618 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 218/619 (35%), Positives = 336/619 (54%), Gaps = 23/619 (3%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 ++ + + PGVY M DA G ++YVGKAK+LK R +YF + LV++ Sbjct: 2 NRQQLEGRIDIAPRTPGVYLMKDAAGKILYVGKAKNLKSRTRAYFSGTDSRAMIPFLVSR 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 I I+ +T TE EAL+LE+N IK + PRYN+ RDDK+Y I + PR + R Sbjct: 62 IHDIEFILTETEKEALILENNLIKEHHPRYNICFRDDKAYFNIRADLNEPFPRFQLVRRP 121 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + +YFGP+P+ + RETL LQ IFP+R C ++ ++R+RPCL+YQI RCL PCV G Sbjct: 122 RKDGAKYFGPYPSSASARETLQFLQSIFPLRTCRDAELKSRTRPCLEYQIKRCLAPCV-G 180 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 ++ E+Y Q V FL G+ + +L +L RM+ A++ + +EEAA +RD+I+A+ E Sbjct: 181 RINSEDYLQMVRDGVSFLEGRGNNLLRELRERMKMAAEQMNYEEAAFLRDRIRAIEETLE 240 Query: 242 KQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q VS T D D+ G+ + + V +L IRQGK+LGSR P + E ++++ + + Sbjct: 241 RQRMVSMTFKDQDIFGLYREGHLIQVCILLIRQGKILGSR-LLPLLKFEGETADMLSSLL 299 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y Q +P EIL+ ++ D+ ++ + L E G+ +++ +G L +A Sbjct: 300 MQYYDQ---SVDIPQEILIPASIEDRQVIREWLEEKRGKGLSILIPRKGRGLELLHIAEQ 356 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANG 419 NA + + L L L L R +E FDIS+ G VA+ V F Sbjct: 357 NAEHGFKMERKSLDDSDESLRLLMERLHLRRFPRKIEAFDISNIGGRLAVAAMVTFQDGR 416 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 PL++ YRR+ I + DDYA M + L+RRY +PD+I++DGGKGQLA A ++ Sbjct: 417 PLKSGYRRFRIRTVHGADDYAMMYEALKRRY---QGKENLPDLIVVDGGKGQLAVAFSLL 473 Query: 480 AELDVSWDKNHPLLLGVAKGA--------DRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 +L +S ++G+AK + ++ + E L L ++Q Sbjct: 474 KDLSISGQD----VIGLAKERVNGVTVQGGVNKSEDRVYLPHKKEALYLSRWPAVLFLLQ 529 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H A+ HR + + S L+ I GVG R++ LL G L +R A+VEE+ Sbjct: 530 RIRDEAHRFAVSYHRSLKTRSDFMSLLDDIPGVGEVRKKALLLSFGDLARIREATVEELT 589 Query: 592 KVPGISQGLAEKIFWSLKH 610 +V GI + L EKI L + Sbjct: 590 QVEGIGKDLGEKIHAFLHN 608 >UniRef50_C9R9D0 Excinuclease ABC, C subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9R9D0_AMMDK Length = 622 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 236/630 (37%), Positives = 347/630 (55%), Gaps = 41/630 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M ++ KA +++ ++PGVY D G VIYVGKA L++R+ SYF+ N S K EA++ Sbjct: 1 MREELLLKA--QSLPAEPGVYLFKDERGEVIYVGKAASLRQRVKSYFQGNP-SPKVEAIL 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 ++ ++ VT E EAL+LE N IKL++PRYNV+L+DDKSYP+I ++ + +PR+ R Sbjct: 58 RRVANLEFMVTDNEVEALILEANLIKLHRPRYNVVLKDDKSYPYIKVTVEEEYPRVLFAR 117 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + YFGP+ AV ETL L+ +FP R C V R SRPCL Y I RC GPC Sbjct: 118 RRDDKRARYFGPYTKAGAVYETLRFLRTLFPYRSCSGPVPRPNSRPCLNYHIKRCPGPCT 177 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G V E Y + ++ + LFL G+ QVL QL M+ A++ L FE AA RD++QA++ + Sbjct: 178 -GQVDPEVYRRNIDSLCLFLEGRYRQVLRQLEREMKQAAEELAFERAAVYRDRLQALKLI 236 Query: 240 TEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 E+Q V ++ +DLDV+G+A A VL +R+G+++G S+ + E ++ Sbjct: 237 LERQRVVSSRPEDLDVVGLARQEDRAQAVVLLVREGRLIGQESFPLTIAPEEE-QGLLTE 295 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ Q+Y G + P E++L + L D L AG ++ + RG + L+LA Sbjct: 296 FLKQYY--GVIASSFPSELVLPSPPLE-EALVDLLRSRAGFEVKIVVPRRGHKKELLELA 352 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 NA AL L + + L++LA L LP V R+E +D SH G VA VVF Sbjct: 353 EKNAWAALNEGLREAEAQARSLSSLAEALGLPRVPHRIEGYDASHLQGVAPVAVMVVFVG 412 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----------------KIPD 461 P ++ YRR+ +T +DY A+ + L RR+ +A + +PD Sbjct: 413 GKPYKSGYRRFALTQPGKPNDYQALRETLYRRFMRARQEEEALAEGRITPQQAKFLPLPD 472 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE--GEGFS 519 +IL+DGG GQ A+ V EL + G+AK E + P G Sbjct: 473 LILVDGGAGQAGVAREVLEELGY-----DIPVFGLAKE-------EEWIYPPHQAGNPII 520 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 LP SPALH++Q +RDE+H A+G HR++R K S L IEG+GP RR LL+ L Sbjct: 521 LPRSSPALHLLQRVRDEAHRFALGFHRRRREKESLRSLLSEIEGIGPARRSALLRAFPTL 580 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + L ASVEE+A+VPG+++ AE ++ Sbjct: 581 EALARASVEELARVPGMTRPAAEAVYRYFH 610 >UniRef50_B5E2L2 UvrABC system protein C n=268 Tax=Bacilli RepID=UVRC_STRP4 Length = 615 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 219/609 (35%), Positives = 333/609 (54%), Gaps = 32/609 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K+ L+ + + PG Y D GT+IYVGKAK+L+ R+ SYFR + KTEALV++I Sbjct: 5 IKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGS-HDTKTEALVSEIVDF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT + EALLLE N IK +P+YN++L+DDKSYPFI ++ + +PRL + R K G Sbjct: 64 EFIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGG 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+P+ A E LL +IFP R+C N S+ C Y IG+C+ + E Sbjct: 124 LYFGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKK-DEA 178 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 + + V FL G+D++++ +L +M A+Q +EFE AA RD IQA+ + KQ V Sbjct: 179 YFKSMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVM 238 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + DV G D G CV V F+RQGK++ P + E T+VGQFY Sbjct: 239 AKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNL--FPYFNDPDEDFLTYVGQFYQ 296 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + S + +P E+L+ ++ ++ + A S + RG++ + + LA NA + Sbjct: 297 EKSHL--VPNEVLIPQDIDEEAVKALVDS-------KILKPQRGEKKQLVNLAIKNARVS 347 Query: 366 LTSKL----SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K + L +L++P R+E FD S+ MG V++ VVF P Sbjct: 348 LEQKFNLLEKSVEKTQGAIENLGRLLQIPTPVRIESFDNSNIMGTSPVSAMVVFVNGKPS 407 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVF- 479 + +YR+Y I + DDYA+M +V+RRRYG+ ++ PD+I+IDGG+GQ+ AK V Sbjct: 408 KKDYRKYKIKTVVGPDDYASMREVIRRRYGRVQREALTPPDLIVIDGGQGQVNIAKQVIQ 467 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL + + G+ K + L F E L +S ++Q I+DE H Sbjct: 468 EELGL-----DIPIAGLQKNDKHQT--HELLFGDPLEVVDLSRNSQEFFLLQRIQDEVHR 520 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR+ R+K +S L+ I+G+GPKR+Q L+++ L ++ ASV+EI +V G+ + Sbjct: 521 FAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV-GVPRA 579 Query: 600 LAEKIFWSL 608 +AE + L Sbjct: 580 VAEAVQTKL 588 >UniRef50_A9WT69 UvrABC system protein C n=2 Tax=Actinobacteria (class) RepID=UVRC_RENSM Length = 655 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 209/649 (32%), Positives = 337/649 (51%), Gaps = 52/649 (8%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEAL 59 M++ + + + PGVYR D G VIYVGKAK+L+ RL+SYF + + KT A+ Sbjct: 1 MANPASYRPKTGEIPTDPGVYRFRDEHGRVIYVGKAKNLRSRLTSYFANPVTLLPKTFAM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V + T+ +E EAL LE+ +IK + PRYN+ RDDKSYP++ ++ G+ PR+ + Sbjct: 61 VHTATSVQWTIVGSELEALQLEYTWIKEFAPRYNLAFRDDKSYPYLAVTMGEEFPRVQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGPF A+RET+ L ++FP+R C S ++ RPCL I +C Sbjct: 121 RGERRKGTRYFGPFT-AGAIRETVDTLLRVFPVRTCSPSTFKRAQQSGRPCLLGYIDKCA 179 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS EE+ + F+ G+ + + L +M A L++E AAR+RD + A Sbjct: 180 VPCV-GRVSAEEHRTLADEFCAFMGGEAKRFIGTLEKQMAEAVAELDYERAARLRDDVIA 238 Query: 236 VRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +R+V E+ V D D+ V D A V V +R G++ G R + + +E Sbjct: 239 LRKVFERNAVVLAEDTSADIFAVHQDELEAAVQVFNVRSGRIRGQRGWVVEKVEDLVPAE 298 Query: 295 VVETFVGQFY-LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 ++E + Q Y + + +P +IL+ ++ L + LS L G K+ ++ RGD+A Sbjct: 299 LIEHLLQQVYGDERADEDRIPRQILVPELPANVEQLTEWLSGLRGAKVEIKVPQRGDKAA 358 Query: 354 YLKLARTNAATALT-SKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQT 408 ++ NA A+ K + + QR AL + ++ R+EC+DISH G Sbjct: 359 LMETVALNAEQAMKLHKSKRAGDLTQRSLALRELQDALDLPLPLLRIECYDISHVQGTNV 418 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK---------- 458 VAS VV + ++EYRR++ITG DD A+M V+ RR+ + + + Sbjct: 419 VASMVVVEDGIAKKSEYRRFSITGDAARDDTASMYDVITRRFRNYLQEQQDRAEALTRPV 478 Query: 459 ------------------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGA 500 P+++++DGG Q+A A+L ++ ++G+AK Sbjct: 479 EFEISDAAETAPKSKFAYPPNLVVVDGGPPQVAATSRALADLGIT----DVAVIGLAK-- 532 Query: 501 DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET 560 LE ++ + LP S L+++Q IRDE+H AI HR+KR K S L+ Sbjct: 533 ----RLEEVWLPEDDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKSMTASLLDG 588 Query: 561 IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + G+G +++ LLK+ G ++ L++A V +I++V GI LAE + +L+ Sbjct: 589 VPGLGESKQKALLKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSALE 637 >UniRef50_Q3AFE5 UvrABC system protein C n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=UVRC_CARHZ Length = 607 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 229/618 (37%), Positives = 337/618 (54%), Gaps = 34/618 (5%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQIQQID 67 +K + PGVY D G VIYVGKAK+LK R+ SYF+ KT ++ + + I+ Sbjct: 5 EKVKNLPDSPGVYLYKDEKGEVIYVGKAKNLKNRVRSYFQPPEKLLPKTRVMMEKARDIE 64 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 V +T TE EAL+LE N IK Y+PRYN+LL+DDKSYP++ ++G+ PRL + R + G Sbjct: 65 VIITSTEVEALILEQNLIKRYRPRYNILLKDDKSYPYLKITGEEFPRLLITRRVVNDGGR 124 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGP+P+ A+ ET LL+ IF R C +++ + RPCL + I +C PC G +S EE Sbjct: 125 YFGPYPDAGALNETYKLLRSIFKFRTCTPTIFAQKKRPCLNFHIKKCSAPCA-GEISREE 183 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y +++E V FL G+ + ++ +L M AS NLEFE AA++RDQI A+ ++ KQ +S Sbjct: 184 YFKEIEMVVDFLEGRGENLIKKLKKEMAIASDNLEFERAAKLRDQILALEKILAKQKISR 243 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 + DV+ VA + + IRQG +LG + Y G E E++ + Y + Sbjct: 244 GQRNADVVVVANRENLGVGLIFVIRQGNLLGQKVY--TFTGEMETGELLNQVLVTHYGEA 301 Query: 308 SQMRTLPGEILLDFNLS-DKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + +P EI+L + D+ L G+K RG++ LK+A N L Sbjct: 302 ---KEVPVEIILSTRENLDEEFLNSWFELKFGKKPKFTVPKRGEKFELLKMALENVNFTL 358 Query: 367 TSKL----SQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPL 421 K+ +Q + L L L LP V R+E +DISH G TVAS VVF P+ Sbjct: 359 DEKIKLNEKKQLLNEKALMDLKEALNLPVVPRRIEGYDISHLAGTGTVASMVVFIDGEPV 418 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI----------DDSKIPDVILIDGGKGQ 471 + +YRR+ I DDY AM + + RR+ K + ++PD++LIDGGKGQ Sbjct: 419 KGKYRRFAIRS-AANDDYTAMFEAVLRRFKKYLALQEEGGADGSFEELPDLVLIDGGKGQ 477 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L A + E ++ ++ +AK E +F + + L D L ++Q Sbjct: 478 LNAAMDALKETNL---LGKFTVIALAKEQ------EEIFLPGKKDSLLLTQDREGLKLLQ 528 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H A G KKR K S LE +EG+GPKRR+ LL G ++ LR A+VEEI Sbjct: 529 RVRDEAHRFARGYQEKKRVK-TLASLLEQVEGIGPKRRKQLLNKFGSIKNLREATVEEIT 587 Query: 592 KVPGISQGLAEKIFWSLK 609 VPGI++ +AE++ L+ Sbjct: 588 AVPGITREIAERLKELLE 605 >UniRef50_A5UY12 Excinuclease ABC subunit C n=5 Tax=Chloroflexaceae RepID=A5UY12_ROSS1 Length = 669 Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 240/669 (35%), Positives = 354/669 (52%), Gaps = 71/669 (10%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALV 60 +D + L+ V PGVY +A G +IYVGK+K L+ R+ SYF KT LV Sbjct: 10 ADPTAFEERLRAVPLAPGVYLWKNAQGKIIYVGKSKRLRDRMRSYFNQTGDPYGKTARLV 69 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 QI V VT TE EALLLE IK ++PR+NVLL+DDKSYP+I ++ +T PR+ R Sbjct: 70 EQIADFQVIVTSTELEALLLEMTLIKQHRPRFNVLLKDDKSYPYIKVTLHETWPRIFATR 129 Query: 120 GAK-HAKGEYFGPFPNGYAVRETLALLQKIFPIR---QCENSVYRNRSR---PCLQYQIG 172 + YFGP+ + AV TL L ++F R +C + + R PCL Y I Sbjct: 130 NPRWEEGARYFGPYSSAGAVYRTLDQLNRLFAFRPPSRCPDDKFNRHRRMGKPCLYYDIK 189 Query: 173 RCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQ 232 RCLGPCV GLV++EEY +E V FL GK D V+ L +ME A++ L+FE AAR+RD Sbjct: 190 RCLGPCVPGLVNQEEYRATIESVCRFLEGKSDLVVKTLRRQMEEAAERLDFERAARLRDS 249 Query: 233 IQAVRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE 291 I+ + ++++Q V D D DVIG+A + GMA V VL IR GK++ + S+ + G Sbjct: 250 IRDIELISQRQQVLRHDDADQDVIGLAREEGMAVVQVLCIRAGKLISAESFPLQNAEGER 309 Query: 292 LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR 351 +++ +F+ QFY +++ L + ++ L++ AGRKI + T RG++ Sbjct: 310 NEDLLASFLTQFYDTAAELPAALLL---PMPLDEPAVIEQWLAQKAGRKITLHTPQRGEK 366 Query: 352 ARYLKLARTNAATALTSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGE 406 R ++LA NA L Q QR L+ + +L L + R+ECFD+S+ G Sbjct: 367 RRLVELAEQNARQKLEELRLQWLNSEQRAVAGLSEVRDLLGLSALPTRIECFDVSNIQGS 426 Query: 407 QTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI------------ 454 V + VVF+ P ++ YR++ I + +D A++ ++LRRR+ +A Sbjct: 427 HAVGAMVVFERGEPKKSRYRKFRIKTVQGANDVASIQEILRRRFRRAAMVIGEEEQQSEA 486 Query: 455 -----------------------------------DDSKIPDVILIDGGKGQLAQAKNVF 479 +++PD+ILIDGG GQL A Sbjct: 487 QRMNGSVNGPAEADDQEEAEKTDTPGSHADIERQETWAELPDLILIDGGVGQLNGAIQAL 546 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 +L +H ++GV KG +R L + L DS AL +I+ I +E+ Sbjct: 547 RDL----RFDHIPVVGVVKGPNRDRF--DLLLPGASDVIVLERDSAALRLIRMIDEEADR 600 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 A HRK R+K +S LE I G+GPKRRQ+LLK G L+G+RNA+V+E+A VPG+++ Sbjct: 601 FAKDYHRKLRSKSATSSRLEEIPGIGPKRRQLLLKRFGSLEGIRNATVDELAAVPGMTRK 660 Query: 600 LAEKIFWSL 608 AE++ L Sbjct: 661 AAEELKSML 669 >UniRef50_C1B4L2 UvrABC system protein C n=10 Tax=Actinomycetales RepID=UVRC_RHOOB Length = 743 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 225/702 (32%), Positives = 339/702 (48%), Gaps = 107/702 (15%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D + T+ PGVY+ D G VIYVGKAK L+ RL+SYF + +T + Sbjct: 1 MPDPSTYRPATGTIPVDPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSTLHPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+N+IK + PR+NV RDDK+YP + ++ + +PRL ++ Sbjct: 61 VTTAGSVEWTVVSTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVY 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL LL ++FP R C V++ RPCL I +C Sbjct: 121 RGPRRKGVRYFGPYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS E+ + VE FLSG+ D+++ QL +RM+ AS+ L+FE AAR+RD + A Sbjct: 181 APCV-GRVSAAEHRKIVEDFCDFLSGRTDKLVRQLEARMQQASEELDFETAARLRDDVGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFI--------------RQGKVLGSR 280 +RR EKQ V G D DV A D A V V + + G V+ Sbjct: 240 LRRALEKQAVVLGDGTDADVAAFATDELEAAVQVFHVRGGRVRGQRGWVVEKAGDVIDWA 299 Query: 281 SYFPKVPGGTELSEVVETFVGQFYLQGSQM----------RTLPGEILLDFNLSDKTLLA 330 + G++L +VE F+ QFY + + + +P E+L+ D + Sbjct: 300 A--VDSAAGSDLPLLVEQFLTQFYGEQAALSGAADQEAGSSGVPREVLVPVLPPDAEQVQ 357 Query: 331 DSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASV 386 + LS L G + ++ RGD+ + + NA AL ++ ++ L + Sbjct: 358 EWLSGLRGSAVRLRVPQRGDKKALAETVQRNAMEALQQHKLRRAGDFTSRSAALQGIQEA 417 Query: 387 LKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAM 442 L L R+EC DISH G VAS VVF+ P +++YR Y I DD A++ Sbjct: 418 LDLDSAPLRIECVDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGRSDDVASI 477 Query: 443 NQVLRRRYGKA--------------------------IDDSKIPDVILIDGGK------- 469 +V RRR+ + + D+ V DGG Sbjct: 478 AEVTRRRFLRHNRDVGVLRAEAAGADGDQASDTDGDQVSDTDGDQVSGGDGGDLAPEAAI 537 Query: 470 -----------------------GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGL 506 Q+A A V EL ++ ++G+AK L Sbjct: 538 DPQTGRPRRFAYPPNLYVVDGGAPQVAAASAVLDELGIT----DVAVIGLAK------RL 587 Query: 507 ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP 566 E ++ E + LP S +L+++Q +RDE+H AI HR KR++ S+L+++ G+G Sbjct: 588 EEVWVPGEEDPVILPRTSESLYLLQRVRDEAHRFAITFHRSKRSRRMTASALDSVRGLGE 647 Query: 567 KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 RR+ L+ + G + L+ ASVEEI VPGI A+ + +L Sbjct: 648 TRRKALVTHFGSVAKLKQASVEEITAVPGIGTATAKAVLTAL 689 >UniRef50_B3QRR8 Excinuclease ABC, C subunit n=3 Tax=Bacteria RepID=B3QRR8_CHLT3 Length = 640 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 206/623 (33%), Positives = 340/623 (54%), Gaps = 36/623 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQ 65 + LK + + PGVY+ D VIYVGKAK+L+ R+ SYFR+ + S KT LV +I Sbjct: 30 LQFKLKNLPTSPGVYQFKDKDERVIYVGKAKNLRARVQSYFRNLSEHSGKTRLLVRRIMD 89 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +++ +T TE EAL+LE+N IK +PRYN+ L+DDKSYP+I ++ + PR+ R + Sbjct: 90 LELILTGTEVEALILENNLIKQLKPRYNINLKDDKSYPYIVVTNEPFPRVFPTRNVRRDG 149 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGPCVE 180 +Y+GP+ +R L + +IF +R C ++ + + CL Y I +CLGPC E Sbjct: 150 SKYYGPYTETRQMRMLLDAISEIFQVRSCSLNMTDENIAARKFKVCLDYHIKKCLGPC-E 208 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 L S E+Y ++ V+ L GK ++ L SRM+ ++ L+FE AA I+ Q++A+ R + Sbjct: 209 ALQSREDYDAMIDEVKKLLRGKTKDIVRSLESRMKNYAKELKFEYAAEIKRQLEALERYS 268 Query: 241 EKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +Q V T + D D+ VA + AC V +R GK+LGS+ ++ ++ +V Sbjct: 269 ARQKVLTTDEIDRDIFAVAREGDDACGTVFKVRDGKLLGSQHFYFSNVEDEPMANLVGRL 328 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAG-----RKINVQTKPRGDRARY 354 + ++YL+ + LP EI S++ + L + +K++ GD+A+ Sbjct: 329 LEKYYLETTD--ILPNEIFTAEQPSNQDAIEALLQKRMSEIGEQKKVHFVIPQIGDKAKL 386 Query: 355 LKLARTNAATALTSKLSQQSTVHQ------RLTALASVLKLPEVK-RMECFDISHTMGEQ 407 + + NA L+ Q+ + + +L L+L + R+ECFD S+ G Sbjct: 387 VDMCAANAKHLLSEYQLQKQKRGEAKAIPHAVRSLERDLRLAKPPRRIECFDNSNFQGTD 446 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILID 466 VAS + F P +++YRR+ I + +D+A+M +++ RRY ++ +S +PD+I++D Sbjct: 447 PVASMICFVDGKPKKSDYRRFKIKTVEGANDFASMAEIIERRYTGSLAESLPMPDLIVVD 506 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ A V + V ++G+AK LE +FF E +LP S + Sbjct: 507 GGKGQLSSAYAVLQKSGVG-----VPVIGLAK------RLEEVFFPNEQLPHNLPKTSSS 555 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L ++Q +RDE+H AI HR+ R+K + L IEG+G + + LLK G + ++ AS Sbjct: 556 LKLLQQVRDEAHRFAITFHRELRSKRTLQTELTEIEGIGKTKAEKLLKTFGSVAEVKKAS 615 Query: 587 VEEIAKVPGISQGLAEKIFWSLK 609 E +A+ G + AE+IF + Sbjct: 616 AEALAEAVG--KKAAERIFAHFQ 636 >UniRef50_Q6MDC8 UvrABC system protein C n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=UVRC_PARUW Length = 610 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 222/614 (36%), Positives = 341/614 (55%), Gaps = 19/614 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQI 63 +D K + + PGVY M + G V+YVGKAK+L++R+ YF R LVA+I Sbjct: 3 YDPK-KIDLFPTLPGVYLMKNEEGEVLYVGKAKNLRQRVKQYFVPGRDGRLMIPYLVAKI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHP---RLAMHRG 120 I+ V +E EALLLE+N IK ++PRYN LL+DDKSY + +S + RL ++G Sbjct: 62 NYIETIVVTSEKEALLLENNLIKQHKPRYNALLKDDKSYIALKISQNDAWATVRLVRYKG 121 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 G YFGP+ + A R+TL LL ++FP+RQC + + R+RPCL YQ+ RC+GPC + Sbjct: 122 TPEPDGLYFGPYTSAQAARQTLDLLNRLFPLRQCSDQEFARRTRPCLLYQMKRCVGPCTQ 181 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 ++ EY Q ++ FL G++ VL L M S+ LEFE+A + I+ + + Sbjct: 182 -KCTKGEYQQHLDRTIKFLRGQNKDVLKDLYEEMRLLSEQLEFEKANHLLRTIRYIEKTI 240 Query: 241 EKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E Q+V G D D IG+ V ++ R GK++GSR + E E++ +F Sbjct: 241 ESQYVDRPLGHDADAIGLFRYGEHVVVVLMIFRGGKLVGSRHFEFDNII-EEDHELLTSF 299 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q Y ++ +P EILL +SD+ + + LS +K+N+Q RG++ +++A+ Sbjct: 300 LLQHYEGATE---IPSEILLPSKISDEHPVEEILSARREQKVNLQIPQRGEKKALIEIAQ 356 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 NA ++ + + + L + +L L R+ECFD S+ G + V+S V F Sbjct: 357 KNAEALFKTQKDEATLREKTLLEMQELLFLTNYPTRIECFDNSNIAGSEPVSSMVAFTDG 416 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 YR Y + + DDYAAM +VL RRY +A +++ +PD++++DGGKGQL A V Sbjct: 417 LKDSKRYRTYRLKIGSKPDDYAAMYEVLTRRYKRAKEENDMPDLVVVDGGKGQLNIAIKV 476 Query: 479 FAELDVSWDKNHPLLLGVAKGADRK---AGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 F EL+++ LLG+AK A R E +F + E L +SP L ++Q IRD Sbjct: 477 FEELNITG----VDLLGLAKEAGRHDKGMTAEQVFTCYQKEPILLKANSPILFLLQKIRD 532 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI HRK+R+K S+L+ I G+GP +R+ LL + G L+ + A+ E+ +V G Sbjct: 533 EAHRVAISFHRKRRSKKTLKSALDDIPGIGPAKRKTLLTHFGSLKKIELAADAELREVKG 592 Query: 596 ISQGLAEKIFWSLK 609 IS E I + Sbjct: 593 ISAANIEAIRTFFQ 606 >UniRef50_A1BED8 UvrABC system protein C n=12 Tax=cellular organisms RepID=UVRC_CHLPD Length = 631 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 215/621 (34%), Positives = 331/621 (53%), Gaps = 39/621 (6%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQIQQIDV 68 + ++ S PGVY+ +A G VIY+GKAK+L+ R+ SYFR+ KT +V +I I+V Sbjct: 20 KVASLPSSPGVYQFKNAQGRVIYIGKAKNLRNRVRSYFRNPQQLFGKTLVMVGKIADIEV 79 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEY 128 +T +E EAL+LE+N IK +PRYNV L+DDK+YP++ ++ + PR+ + R K + Sbjct: 80 IITSSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITNEPFPRILVTRQVKKDGSTW 139 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQC-----ENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 FGP+ +R L + IFPIR C ++ R + + CL Y I +C GPC EGL+ Sbjct: 140 FGPYTEARQLRSILDFIGSIFPIRSCKLRLSPENISRGKFKVCLDYHIHKCKGPC-EGLL 198 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +EEEY + + L GK + L RM + ++ L+FE+AA ++ QI +++R E+Q Sbjct: 199 TEEEYLLMIVEITRLLKGKTSATIRSLNERMLSFAKELKFEQAAELKTQIDSLKRYAERQ 258 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V + D DV VA C V IR+GK+LGS + G + +++ V + Sbjct: 259 KVVTSDTLDRDVFAVASRNDDGCGVVFKIREGKLLGSERLYMNNTEGVSVQDLLARVVER 318 Query: 303 FYLQGSQMRTLPGEILLDFN--LSDKTLLADSLSELAG------RKINVQTKPRGDRARY 354 +YL+ LP EI L +K L + L R I + G++A Sbjct: 319 YYLETC--NLLPDEIFLQTELPAEEKETLENLLISKISAEGKQKRTIRLTVPIIGEKAHL 376 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTA------LASVLKLPE-VKRMECFDISHTMGEQ 407 ++L R NA L L Q+ + L LA +L LP+ R+ECFD SH G Sbjct: 377 IQLCRENARHHLEEYLIQKQKRGEALREHSGLIALAELLHLPKTPNRIECFDNSHFHGTD 436 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILID 466 V+S V F +++YR++ + + DDYAAM++VL RRY + + +PD+I++D Sbjct: 437 YVSSMVAFVHGKAKKSDYRKFKLKTVQGSDDYAAMHEVLTRRYSGTLSVELPLPDLIVVD 496 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ A V L + ++G+AK +E +F + F+LP SPA Sbjct: 497 GGKGQLSTAVKVLVSLKL-----DIPVIGLAK------RIEEIFTPHTSDPFNLPKTSPA 545 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L +IQ +RDE+H A+ HRK R + + L TI+G+G K Q LL++ G + +R A Sbjct: 546 LKLIQQLRDEAHRFAVTYHRKLRTERTLETELTTIQGIGEKTAQKLLRHFGSVDLIRTAG 605 Query: 587 VEEIAKVPGISQGLAEKIFWS 607 V+E+ G A ++ Sbjct: 606 VDELRAAAG--NKTAALLYRF 624 >UniRef50_C8QX27 Excinuclease ABC, C subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX27_9DELT Length = 610 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 234/609 (38%), Positives = 329/609 (54%), Gaps = 15/609 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQI 63 FD + PGVY M DAGG V+YVGKA L+KRL SY R + A R KT ++ ++ Sbjct: 2 FDP-VMIADAADAPGVYLMRDAGGQVLYVGKAVSLRKRLQSYSRIDPAGRSKTSVMLGKV 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ++D +T TE EAL+LE IK ++PRYNV+LRDDKSYP + ++ + PRL M R Sbjct: 61 AKVDTVLTRTEKEALILEAGLIKQHRPRYNVILRDDKSYPHLKVTVQEEWPRLLMTRRVS 120 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 YFGP+ + A+ ETL LL +FP+R+C+ + R CL +Q+GRC PC+ G Sbjct: 121 KDGARYFGPYASPAAMWETLRLLNSLFPLRRCKAKKFAPGQRACLNHQMGRCPAPCI-GA 179 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 ++ E Y Q+V V L G+ ++ +L RM+ A+ L FEEAA +RDQI+A+ + EK Sbjct: 180 ITPEAYRQRVSQVLAILEGRKRELTRELTGRMQEAAAGLNFEEAAALRDQIRALNQTLEK 239 Query: 243 QFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V DLDV G+ G +LFIR+G + R +F P G + EV+ + Sbjct: 240 QVVLGRERVDLDVFGLVRRHGQVAAALLFIREGALADKREFFLAEPVGEDD-EVLAELLR 298 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 +FY R +P ILL L + LSE G + + RGD+ + +A N Sbjct: 299 RFYEH--PQRPIPRSILLPLPAEGAAALTEWLSEKRGGPVRLLVPRRGDKKALVTMAGDN 356 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDANGP 420 A L ++ QQ+ + L+L +R+EC DIS+ G + V S V F Sbjct: 357 AGQLLAAREKQQAGWLSLGEEIRRALRLTSSPQRIECLDISNLGGREAVGSLVSFRQGEK 416 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + YRR++I + DDYA M +VL R +A +PD++++DGGKGQL A+ V A Sbjct: 417 ESSRYRRFHIRNLATPDDYAMMREVLLRHLCRAAAAETLPDLLVLDGGKGQLGVAQAVLA 476 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 EL + P L+ +AK DR+ E LF L SP L IRDE+H Sbjct: 477 ELALPG----PELVSIAK--DREGSGERLFRPGRKNHLKLAQHSPVLLFFMKIRDEAHRF 530 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 I HR+ R + + S LE I GVGP R+Q LLK +G L G+ A+ E++A VPGI L Sbjct: 531 GITFHRRLRRQKQLVSRLEEIPGVGPGRKQALLKQLGSLAGVAAATPEQLAAVPGIGPEL 590 Query: 601 AEKIFWSLK 609 A I L+ Sbjct: 591 AAVIHRHLQ 599 >UniRef50_Q1AUH1 UvrABC system protein C n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=UVRC_RUBXD Length = 611 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 222/611 (36%), Positives = 332/611 (54%), Gaps = 25/611 (4%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVTVT 71 + + PGVY D G V+YVGKA++++ R++SYF RS K L +++QID Sbjct: 11 HLPASPGVYIFRDGEGRVLYVGKARNIRSRVASYFTRSGDGRPKIAELRERVRQIDFIAA 70 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFG 130 ETEAL+LE N IK ++PR+N LRDDKSYP+I ++ GD +PR+ RG + YFG Sbjct: 71 RGETEALVLEANLIKRHRPRFNASLRDDKSYPYIVVTTGDEYPRVFATRGPHDPRHRYFG 130 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-PCLQYQIGRCLGPCVEGLVSEEEYA 189 PFP+ +V TL +L K F R+C RS PCL Y IGR PC+ G VS+EEY Sbjct: 131 PFPSAGSVHATLDVLNKTFRFRKCRGPEPGRRSGIPCLNYHIGRSAAPCI-GAVSKEEYG 189 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + V FL G+ D ++ + +M A+ ++FE AAR+RD+ A+R V ++Q + Sbjct: 190 AIIADVIAFLEGRVDGLIREREEQMRRAAAEMDFERAARLRDEAAALRHVRDRQQATIAS 249 Query: 250 DD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 +D D +G + ACV + +R+G+++G S+ G + V +FV Q+Y + Sbjct: 250 EDSFDAVGAYAEGEEACVQIFAVREGRIVGRDSFLLDNYGEQDAESVALSFVPQYYETAA 309 Query: 309 QMRTLPGEILLDFNLSDK-TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 +P E+L+ + +A+ LS L G ++ V+ RGD+ R L+LA NA L Sbjct: 310 ----VPREVLVSSPDEEALAPIAEHLSRLRGTRVEVRRPQRGDKRRVLELALHNARMGLE 365 Query: 368 SKLS----QQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLR 422 + + ++S + L L L LP + R+EC+DIS+TMG +VAS VVF P + Sbjct: 366 HERAMSEARRSRLSSTLDRLREELALPRLPMRIECYDISNTMGTNSVASMVVFQGGRPAK 425 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAI----DDSKIPDVILIDGGKGQLAQAKNV 478 +YRR+ I + DD A+M +V+RRR + + S PD+IL+DGGKGQL+ V Sbjct: 426 DQYRRFRIKTVEGADDPASMAEVVRRRLERLLAGDEKFSPAPDLILLDGGKGQLSAVAEV 485 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 L + +AK E +F L PDS L ++Q +RDE+H Sbjct: 486 LEGLGSGGRLPDIPVRALAKRE------EEVFEPGRPGPVVLAPDSAELRLLQRVRDEAH 539 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A HRK R + S L+ + GVGP R++ +L++ G Q AS+EE+ VPG+ Sbjct: 540 RFANAYHRKLRGRAMTASVLDDLPGVGPVRKRRILEHFGTPQAFLEASLEELEAVPGLPG 599 Query: 599 GLAEKIFWSLK 609 +A +I L Sbjct: 600 RVAREIHARLH 610 >UniRef50_C7HUD8 UvrABC system, C protein n=2 Tax=Anaerococcus RepID=C7HUD8_9FIRM Length = 615 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 209/627 (33%), Positives = 335/627 (53%), Gaps = 33/627 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEAL 59 M++Q K LK + PGVY M ++ +IYVGKA +LKKR+S YF +N RK ++ Sbjct: 1 MNNQ--IKEKLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNKNKGRKVLSM 58 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V+ I + + E EAL+LE N IK +P+YN++LRDDK YP+I ++ + PR+ R Sbjct: 59 VSHINHFEYIIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKITNEKFPRIQKVR 118 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGP 177 K KG Y+GP+P+ YAV + + L ++PIR C + + + RPCL Y I RC P Sbjct: 119 NVKKDKGYYYGPYPDAYAVNDVIELFHILYPIRTCNLNFDKGQQLDRPCLNYYIDRCKAP 178 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 CV G E+EY + + ++ FL K D + +I++M AS+ L+FE AA+ RD +A+ Sbjct: 179 CV-GKGDEKEYMENITKIKNFLENKSDYIPNLVINKMNKASEILDFENAAKYRDYHRALS 237 Query: 238 RVTEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 +++KQ V+ T GDD+D+I ++ + V F+R GK++ + K + +++ Sbjct: 238 TISQKQKVTTTNGDDIDIIAMSKGIFYVTMQVFFMRDGKIVDREHFIIKDDYREKDEDII 297 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 +F+ QFYL + +P EIL+ SD L + + G K+ + G + + Sbjct: 298 SSFMKQFYL---NLMYIPKEILVHKLPSDLDALNLFIEKKKGNKVKINCPKLGKKKELVD 354 Query: 357 LARTNAATALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASC 412 +A NA+ + ++ H L L +L L + R+E +DIS+T G Q+V S Sbjct: 355 MAFRNASDMMRKYEKRLEEKERKKHSGLNGLKEILNLKSINRIEAYDISNTSGVQSVGSM 414 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKIPDV 462 VVF R EYR++ I I DDY ++ +VL RR+ +A + K+PD+ Sbjct: 415 VVFQNGIAERKEYRKFKIKTIEGPDDYHSLEEVLTRRFERAKKEIKNNNTYTGFGKLPDL 474 Query: 463 ILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 IL+DGGKGQ+ AK V +L+ S + + G+ K E E + Sbjct: 475 ILMDGGKGQVKSAKKVLKDLNFSIE-----VAGLVKDDKHTTRAIIY----ENEEIQIKK 525 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGL 582 P +I I++E+H AI HRK + S L+ I G+G ++++ LLK+ ++ + Sbjct: 526 RDPVYKLIYEIQEEAHRFAINYHRKLMTQTMKKSELDNINGIGKRKKENLLKHFKSVKNI 585 Query: 583 RNASVEEIAKVPGISQGLAEKIFWSLK 609 + AS+EE+ +V I + A +I K Sbjct: 586 KKASLEELMEVDLIGESQALEIIKYFK 612 >UniRef50_Q4FPI1 UvrABC system protein C n=3 Tax=Candidatus Pelagibacter RepID=UVRC_PELUB Length = 611 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 214/612 (34%), Positives = 350/612 (57%), Gaps = 19/612 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + PGVYRM D ++YVGKAK+L RL SY +T +++Q ++ Sbjct: 11 IRKELPLIPKSPGVYRMLDHKDVILYVGKAKNLPNRLKSYVAEKNHIIRTARMLSQTFKL 70 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAK 125 ++T T E+EALLLE N IK ++P++N+LL+DDKS+PF+F+S D ++ HRG K + Sbjct: 71 EITTTANESEALLLEANLIKKHKPKFNILLKDDKSFPFVFISNKDQWAQVTKHRGKKDKE 130 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGPF + T+ +LQKIF IR C++S ++NR RPC+ YQI RC GPCV+ + + Sbjct: 131 GFYFGPFASAGTANWTIKMLQKIFQIRVCDDSTFKNRKRPCILYQIKRCSGPCVD-YIDK 189 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y + V+ F+SGK + L +ME AS+ L+FE A+ RD+I+++ + Q + Sbjct: 190 EDYKKSVDQAIQFVSGKSRDIQKNLSKQMEEASEKLDFERASIFRDRIKSLNIIQSSQRI 249 Query: 246 SNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + D DVI ++G C+ V F R + G+++YFPK LSE++ +F+ QFY Sbjct: 250 NEANLIDADVIAAYKESGKTCIQVFFYRSKQNWGNQAYFPKHDPDQSLSEIMSSFLMQFY 309 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + + +P I+++ + DK L+ ++LS+ I++ +G +A+ + +A NA Sbjct: 310 ----ENKNVPKLIIINTEIEDKKLIEETLSKKENSAISINVAKKGTKAKVIAMAEKNAKE 365 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L K+ + + +A L + +E +D SH G +V + + F G ++ Sbjct: 366 SLNRKIYETNNNKNLFEGVAKKFDLKNGLNLVEVYDNSHISGTNSVGAMITFGNEGFVKK 425 Query: 424 EYRRYNITGI-TPGDDYAAMNQVLRRRYGKAIDDS----KIPDVILIDGGKGQLAQAKNV 478 YR+++I DD+A + +VL RR+ +A+ + +PD+ILIDGGKGQ + AK V Sbjct: 426 RYRKFDIKTKGNEQDDFAMLKEVLTRRFKRAMLEKGNYLTLPDLILIDGGKGQYSSAKEV 485 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 E + + ++ +AKG R +G ET F++ + F + P L +Q +RDE+H Sbjct: 486 LDEFGL----HDLPMIAIAKGKLRNSGDETFFYKGKS--FKFDKNDPTLFFMQRLRDEAH 539 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR KRAK S L+ I+G+G R++ LL + G + + +AS +EI V G+ + Sbjct: 540 RFAITSHRAKRAKGITKSLLDQIDGIGSIRKRALLNHFGSARAVESASFDEIKSVEGVEE 599 Query: 599 GLAEKIFWSLKH 610 +A+KI+ Sbjct: 600 KVAKKIYNFFHE 611 >UniRef50_D1BHL1 Excinuclease ABC subunit C n=16 Tax=Actinomycetales RepID=D1BHL1_SANKS Length = 703 Score = 644 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 220/662 (33%), Positives = 334/662 (50%), Gaps = 64/662 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + + + PGVYR D G VIYVGKAK+L+ RLSSYF+ +T+ + Sbjct: 1 MADPATYRPAPGEIPTTPGVYRFRDDHGRVIYVGKAKNLRARLSSYFQDLAALHPRTQTM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+++IK Y PR+NV RDDKSYP++ ++ G++ PR + Sbjct: 61 VTTASSVEWTVVGTEVEALALEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGESVPRAQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG+K YFGPF + +A+RETL LL ++FPIR C VY+ RPCL I +C Sbjct: 121 RGSKRVGTRYFGPFAHAWAIRETLDLLLRVFPIRTCSAGVYKRAQQSGRPCLLGYIDKCA 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCVE +S++ + + F++G + + +L M A+QNL++E AAR+RD I A Sbjct: 181 APCVE-RISKDAHRALADDFCAFMAGDTAKFMRRLRDEMSMAAQNLDYERAARLRDDIGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + R EK V G D D+ + D A V V +R G++ G R + + +E Sbjct: 240 LERAMEKNAVVLQDGTDADIFALTGDELEAAVQVFHVRGGRIRGQRGWVVEKVEDLTDAE 299 Query: 295 VVETFVGQFYLQGSQMR-----------TLPGEILLDFNLSDKTLLADSLSELAGRKINV 343 +VE + Q Y + +P E+L+ + + LS L G ++++ Sbjct: 300 LVEHLLQQVYGTADEAAGGDAQAARDSGLVPREVLVPVLPAHLEQMTTWLSGLRGARVDI 359 Query: 344 QTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEVK-RMECF 398 + RGD+ NA AL +++ + L + L L R+EC+ Sbjct: 360 RVPQRGDKRELAATVLKNAEHALALHRTRRAGDLTNRSLALREIQEALDLDSAPLRIECY 419 Query: 399 DISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGKAID 455 DIS TMG AS VVF+ ++EYR + + G DD AAM +V+ RR+ + + Sbjct: 420 DISTTMGTHQAASMVVFEDGLARKSEYRTFGVKGPDGDGARDDTAAMYEVITRRFRRYLA 479 Query: 456 DSK----------------------------IPDVILIDGGKGQLAQAKNVFAELDVSWD 487 + P+++++DGG Q+A A A+L + Sbjct: 480 ERSDSSDIELETFGGEVDAETPATDRKRFAYPPNLVVVDGGPPQVAAAAKALADLGI--- 536 Query: 488 KNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 547 + L G+AK LE ++ E L S L+++Q +RDE+H AI HRK Sbjct: 537 -DDVALCGLAK------RLEEVWVPGEEYPVILQRSSEGLYLLQRVRDEAHRFAITAHRK 589 Query: 548 KRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 KR K S L+++ G+GP R+ LL++ G L+ LR AS EEIA V G+ Q AE + + Sbjct: 590 KRGKGMTVSELDSVPGLGPARKGALLRHFGSLKRLRAASAEEIATVQGMGQRTAEAVVAA 649 Query: 608 LK 609 L Sbjct: 650 LH 651 >UniRef50_UPI0001C41B0D excinuclease ABC C subunit UvrC n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B0D Length = 615 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 206/627 (32%), Positives = 343/627 (54%), Gaps = 53/627 (8%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + +PG+Y M D +IYVGK+K L+ R+ SYF+ NL S KT+ L++ ++ VT Sbjct: 9 DELPQKPGIYIMKDINEEIIYVGKSKSLRNRVKSYFQKNLDSPKTKVLMSHFNSLEYIVT 68 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGP 131 +TE EAL+LE N IK ++PRYN+ L+DDK YP++ ++ + P++ + R G Y+GP Sbjct: 69 NTEKEALILEANLIKKHRPRYNIRLKDDKRYPYVKITDEDFPKIVITRTI-SKTGTYYGP 127 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 F + AVR+T+ L+++F IR C+ PCL QI C PC +G +S+EEY + Sbjct: 128 FTDVTAVRQTVKFLKQLFRIRTCKRM-----DGPCLNSQIDLCYAPC-DGQISKEEYKEH 181 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD- 250 ++ + LF GK ++++ L M+ A++ E+E+AA IRDQI ++ V +KQFV D Sbjct: 182 IKKIDLFFQGKYNKIIKDLEIEMKQAAERQEYEKAAVIRDQISSIDEVMKKQFVEFENDL 241 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 D D+I +A+ A V+ IR GK++G + T EV+ F+ Q+Y Sbjct: 242 DQDIIAIAYTIHNAVAVVMNIRNGKIMGKDDFTMDGSENTTSDEVISAFIKQYYGIN--- 298 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 R +P E+LL+ ++ DK L+ + LS+L G K++++ +G++ R +++A NA Sbjct: 299 RHIPKEVLLEEDIPDKELIEEWLSDLRGNKVSLKVPQKGNKLRLVRMAGKNAEII----K 354 Query: 371 SQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 +Q+ + + L L L ++ R +E +DIS+ G+ V S V F P + +Y+++ Sbjct: 355 NQRQKMENSMMELKRYLNLKKLPRVIEGYDISNISGKLAVGSKVSFLDGKPNKKQYKKFK 414 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDD--------------------------SKIPDVI 463 + +D+A M ++L RR + + P++I Sbjct: 415 MNT-PGPNDFAMMKELLERRLKPLKEHYEKVRINEEHTKHNEAETEKIEPLKLGEEPNLI 473 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 +IDGGKGQL A +V E +++ H ++G+AK E ++ +P D Sbjct: 474 VIDGGKGQLGMAVDVLKEYNLT----HIPIIGLAKE------FEEIYIPNSSFPIIIPQD 523 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 + ALH++Q +RDESH A+ HRK R+K S L+ IEG+G KR+ LL++ G ++ Sbjct: 524 NEALHLLQQVRDESHRFAVTYHRKLRSKKIEESPLDEIEGIGKKRKLELLRHFGDFDSIK 583 Query: 584 NASVEEIAKVPGISQGLAEKIFWSLKH 610 ASVEE+ V G+++ +A ++ Sbjct: 584 KASVEELKGVDGMNEKVALNVYNYFHE 610 >UniRef50_C0QET6 UvrABC system protein C n=2 Tax=Desulfobacteraceae RepID=UVRC_DESAH Length = 606 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 221/602 (36%), Positives = 344/602 (57%), Gaps = 15/602 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDVTV 70 ++ PGVY M D GT+IYVGKA +LKKRL+SYF R KT L+ ++ D+ V Sbjct: 10 QSAPQNPGVYLMKDKRGTIIYVGKALNLKKRLASYFARETGHDMKTGVLLKKVVDFDLIV 69 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEYF 129 T TE EAL+LE IK + PRYNV+L+D KSYP + + + P L + R YF Sbjct: 70 TATEHEALILESTLIKKHSPRYNVILKDGKSYPCLRIDTSKPFPALEVVRKIGDDNAVYF 129 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+ + +VR T+ + KIF +R+C + + NR+RPCL YQI CLG C VS +EYA Sbjct: 130 GPYSSVQSVRSTIKQVNKIFKLRKCRDVQFANRTRPCLNYQINACLGACC-NRVSRQEYA 188 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + V V LFL G+ ++ +L M+T + FE AA+IRD I A++ E+Q V +T Sbjct: 189 RVVGDVILFLKGRAPDLINRLKFEMQTEADLEHFERAAQIRDTILAIQTTLERQVVVSTD 248 Query: 250 D-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D DVI A + A V +LF+R G ++GSR+Y + + E+++ FV +Y + Sbjct: 249 RTDRDVIACAINGEKAVVTILFVRSGNLVGSRNYPFDTGL-SGVPEILDAFVRHYYERSL 307 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 +PG+IL+ + + L+ D L E G+++++ RGD+ R +++A NA L Sbjct: 308 ---FIPGQILIAEKIENHGLVQDLLIEKRGKRVSLVVPERGDKRRLVEMALVNAQKELEK 364 Query: 369 KLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 LS Q+ + LTAL ++L + +R+ECFD S+ G V+S VVF ++EYR+ Sbjct: 365 NLSIQNEAWETLTALQTILGMSVYPRRIECFDNSNMAGTDPVSSMVVFVDGLACKSEYRK 424 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWD 487 + I DDYA M +VL RR ++ +PD++++DGGKGQL+ A V L + Sbjct: 425 FIIRDAKENDDYACMTEVLTRRLSST--EAPLPDLLVVDGGKGQLSMAVAVLKSLGL--- 479 Query: 488 KNHPLLLGVAKGADRKAG-LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 +N + G+AK + + ++ + AL+++Q +RDE+H AI R Sbjct: 480 ENRFQVAGLAKKDAKLGEVYDKIYLPGRANPVNTRGALKALYLVQRLRDEAHRFAITFQR 539 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 K+R+K TS L+ + G+G KR+Q+L+ G+ + A+VEE+A +PG++ A+++ Sbjct: 540 KRRSKRAGTSVLDAVPGIGKKRKQVLMTTYKGISRMGQATVEELASLPGMTLAAAQQVKS 599 Query: 607 SL 608 +L Sbjct: 600 AL 601 >UniRef50_C1A8T0 UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=UVRC_GEMAT Length = 616 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 215/609 (35%), Positives = 315/609 (51%), Gaps = 29/609 (4%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDV 68 L + PGVY D G V+YVGKAK L+ R+ SY+ + + +S KT A+V +++ ++ Sbjct: 6 KLPHLPESPGVYLWKDVEGQVLYVGKAKRLRSRVRSYWAQEHESSPKTRAMVRKVRDLET 65 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGE 127 V +E AL+LE IK Y PR+N+ LRDDKSYP+I ++ + PR+ + R Sbjct: 66 IVVPSEAHALILEATLIKEYHPRFNIALRDDKSYPYIRVTVNEPFPRVMVTRRLLDDGAR 125 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVY-RNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+ + A+R L ++++IF +R C ++ RPCL Y I RC PCV G S E Sbjct: 126 YFGPYTDVGAMRRALNVVKRIFTVRSCHYALPGEAPERPCLDYSIKRCKAPCV-GYQSRE 184 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +Y ++ V FL G+ V+ + RM AS+ L+FE AA +RD + + ++ V Sbjct: 185 DYRAMIDEVVWFLDGRTSDVMHHVRERMLDASERLDFERAAELRDALAHLEKMESPSVVL 244 Query: 247 N-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 G D DV+G A D ACV V+ IR GK+L + E V+ + Q+Y Sbjct: 245 EVEGGDRDVVGYARDGEDACVAVMRIRGGKLLARDHRLLEHAEDEEDGAVLGACLAQWY- 303 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 GE+L+ F+ D+ L SL +++ RG R + LA NA Sbjct: 304 --RTAEARAGELLVPFDFEDRESLEASLD-----GTHIRVPQRGPRRALVDLADQNARHL 356 Query: 366 LTS----KLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGP 420 L L + L L LP + R + CFDISH G VAS V F+ P Sbjct: 357 LEEFKLAALEADERAVDPVYELQRELGLPRLPRSLVCFDISHAQGTDVVASAVFFENGRP 416 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVF 479 R+EYR++ I DD+ +M++V+ R + + + ++ +PD+ +IDGGKGQL A+ Sbjct: 417 KRSEYRKFKIKVFEGNDDFRSMHEVVTRYFRRRLDEEKPLPDLAVIDGGKGQLGAARAAL 476 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL L+ +AK E +F + LP SPAL ++Q RDE+H Sbjct: 477 DELGAP----QIGLISLAKRE------EEIFQYGRPDPVRLPRRSPALRMLQQARDEAHR 526 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI R+KRA TS L I GVGP +R+ LL G +QG+R ASVE+IA +PG Sbjct: 527 FAITFQRQKRAARTITSELLKIPGVGPTKRRALLHTFGSVQGVREASVEQIAAIPGFGAA 586 Query: 600 LAEKIFWSL 608 A ++ +L Sbjct: 587 SARRLLEAL 595 >UniRef50_Q0B0A0 UvrABC system protein C n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=UVRC_SYNWW Length = 601 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 217/618 (35%), Positives = 349/618 (56%), Gaps = 27/618 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M D+ K LK V QPGVY + G V+YVGKA+ L++R+ SYF++ K +A+ Sbjct: 1 MGDEM-LKERLKKVPLQPGVYLFKNQEGQVLYVGKARVLRQRMRSYFQAPERMHPKVKAM 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 +A + D VTH+E EAL+LE+N IK Y+PRYN+ LRDDKSYP+I ++ D PR+ + Sbjct: 60 MAWVSDFDFIVTHSEMEALILENNLIKSYKPRYNIDLRDDKSYPYIKVTVADKFPRVYLA 119 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R K YFGP+ + ++R+TL LL +F +R C ++R RPCL +G+CL PC Sbjct: 120 REKKDGVSRYFGPYTDVTSLRDTLKLLNGVFGLRSC--RTMKSRRRPCLNRDMGKCLSPC 177 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G +SEEEY+Q+V+ + FL G +++ + M A+++LEFE+AAR+RDQIQ++R+ Sbjct: 178 -SGEISEEEYSQKVQALITFLEGDFQEIVREKEKEMAMAARSLEFEKAARLRDQIQSLRQ 236 Query: 239 VTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + EKQ + + +LD++G+ V V +R GK++G +++ K P + +E +E Sbjct: 237 LGEKQKIELASPYELDLVGMLSGEKENLVLVFKVRSGKIVGKDTFWLKRPIQEDENEAME 296 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 F+ +Y + +P EILL S+ L+ L ++ ++ RG++ + L + Sbjct: 297 FFIKHYYDENPD---IPPEILLSHLPSESKLVEAWLKSRVSHRVELRVPQRGEKKQVLNM 353 Query: 358 ARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFD 416 NA L K +++ L+ LA VL L V R+ECFD+SH GE+TVAS VVF Sbjct: 354 LLENARLLLEEKQREENKQLAALSHLARVLDLEVVPNRLECFDVSHLAGEETVASMVVFV 413 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI----PDVILIDGGKGQL 472 P + YR + I +D A++ + +RRR A + PD+IL+DGG GQ+ Sbjct: 414 GGQPEKKAYRHFKIRT-QQNNDTASLAETVRRRLENARQANPAFLPEPDLILVDGGLGQV 472 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 V E+++ L +A+ E ++ + + L L ++Q Sbjct: 473 NAVAAVLQEMNL-----DIPLFALAEKN------EEIYRPGKSQPLVLAARDNGLQLLQR 521 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI +RK+RAK +S+L+ I G+G +R++ LL + + ++ AS++EIA Sbjct: 522 LRDEAHRFAIEYNRKRRAKKIRSSALDEIPGIGKQRKKNLLVHFTSVAKIKEASLDEIAA 581 Query: 593 VPGISQGLAEKIFWSLKH 610 VPG+++ A + + Sbjct: 582 VPGMNRKAALAVIEFFHN 599 >UniRef50_D1R706 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R706_9CHLA Length = 614 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 220/605 (36%), Positives = 338/605 (55%), Gaps = 19/605 (3%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQ 62 FD K L + PGVY M + G ++YVGKAK+L+ R+ YF S LV Q Sbjct: 2 PFDPKT-LSLYPNHPGVYLMKNRTGMILYVGKAKNLRTRIRQYFMTSGDGREMIPFLVPQ 60 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HR 119 I+ I+ +E EALLLE + IK ++P+YN LL+DDKSY + ++ + P L++ +R Sbjct: 61 IESIETISVTSEKEALLLESHLIKKHKPKYNALLKDDKSYVALKINVKNPWPMLSLERYR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 G A G YFGP+ + A R TL LL ++FP+RQC ++ + R+RPC+ Y + RC+ PCV Sbjct: 121 GKPKADGVYFGPYTHAGAARRTLDLLHRLFPLRQCSDAEFARRTRPCILYDMKRCIAPCV 180 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 + ++EEY QV+ FL G++ ++L ++ MET ++NLEFE+A + D I+ + + Sbjct: 181 Q-KCTKEEYQIQVDRTIKFLRGQNKEILQEMYQEMETYAENLEFEKAGKSLDTIRYIEKT 239 Query: 240 TEKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 E Q+V + +G D D +G+ + L R+G++ S+S+ + +E++ + Sbjct: 240 IEPQYVDSVSGKDADALGIYRQGEDVMLCQLLFREGRLTSSQSFNFTKIAD-DDAELLTS 298 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 FV Q Y LP EILL + D+ L + LSE RK+ V RG ++ + +A Sbjct: 299 FVLQHYQNRD---FLPHEILLPIEIEDEVALTELLSENRARKVQVYAPKRGGKSVLIDMA 355 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 + NA + + ++Q+ L A+ L KR+EC D SH G + V+S +VF Sbjct: 356 QANAEASFKKEKNEQTLRENILLAIQEQFHLTNYPKRIECIDNSHIAGTEHVSSVIVFTD 415 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 YR Y + P DDY AM +VL RRYGKA D++ +PD+++IDGGKG L A Sbjct: 416 GKKDTRNYRTYTLKQAGPSDDYGAMREVLTRRYGKAKDENDLPDLLIIDGGKGHLNIALK 475 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAG---LETLFFEPEGEGFSLPPDSPALHVIQHIR 534 V ELD+ ++G+AK R LE +F + L SP L ++Q IR Sbjct: 476 VLVELDI----ISVNVIGIAKEQGRHDRGLTLEQVFLPNVKDPLILKVTSPILFILQQIR 531 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE+H I HRK+ K S L+ + G+GP +++ LLK+ G ++ ++ AS EE+ K+ Sbjct: 532 DEAHRFVIKFHRKRMQKRTIKSILDDVPGIGPAKKKALLKHFGSIKKIKEASDEELKKMK 591 Query: 595 GISQG 599 GIS+G Sbjct: 592 GISEG 596 >UniRef50_C1FMJ8 UvrABC system protein C n=14 Tax=Clostridium RepID=UVRC_CLOBJ Length = 618 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 203/631 (32%), Positives = 323/631 (51%), Gaps = 40/631 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQI 63 FD + LK + +PGVY M + G +IYVGKAK LK R+ YF+ + S K +A+V I Sbjct: 2 FDLEYQLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ++ + +T +E EAL+LE N IK Y+P+YN+LL+DDK YPFI ++ + PR+ R Sbjct: 62 EEFEYIITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVT 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS--RPCLQYQIGRCLGPCVE 180 +YFGP+ +G +V++ + L++K FPIR C+ ++ RPCL YQIG C PC + Sbjct: 122 KDGSKYFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQ 181 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + + EY + ++ V LSGK ++ ME A++NLEFE+AA +RD+I + ++ Sbjct: 182 -YIKKSEYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIG 240 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + N D+ D I + D C V F+R GK++G + + T S ++ F Sbjct: 241 EKQKIILNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + +FY + +P I + N+ D+ LL L+ K ++ +G++ L L Sbjct: 301 LKEFYGGTA---YIPKTIYVP-NIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVE 356 Query: 360 TNAATALT----SKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVV 414 NA T L L +++ L L ++L+L E R+E FDIS+ G +V S VV Sbjct: 357 KNAKTTLENFKLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVV 416 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK---------------- 458 F+ ++YRR+ I + DDY +M ++L RR+ + + K Sbjct: 417 FEKGRAKPSDYRRFKINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSV 476 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 PD+IL+DGGKGQ+ A V ++ + G+ K + GE Sbjct: 477 FPDLILMDGGKGQINIALEVLNTFNI-----DIPVCGMVKDNKHRTRG----LIYNGEEI 527 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 + + I ++DE H AI HR R K S L+ I +G KR++ LL Sbjct: 528 IINKYGSVMKFITRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKS 587 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + ++ A+ EE+ +P + + AE + K Sbjct: 588 IDNIKKATYEELLSIPSMDKKSAECVLEFFK 618 >UniRef50_C7RHW1 Excinuclease ABC, C subunit n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHW1_ANAPD Length = 616 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 202/621 (32%), Positives = 322/621 (51%), Gaps = 31/621 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQ 65 K LK + PGVY M +A +IYVGKA LK+R+ YF +N K A+V I Sbjct: 6 IKEKLKELPDLPGVYIMRNAEDEIIYVGKAISLKRRVRQYFDNNKNKGAKVLAMVKNIDH 65 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 + + E EAL+LE N IK +PRYN++LRDDK YP+I + + +PR+ R Sbjct: 66 FEYIIVQNEVEALVLESNLIKKNRPRYNIVLRDDKQYPYIKICKEKYPRIKKVRQVLKDG 125 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGLV 183 G YFGPFP+ YAV + + L +P R C + + RPCL Y I +C GPCV+ Sbjct: 126 GRYFGPFPDAYAVNDAIDLFHLYYPFRTCNLNFDKGARLDRPCLNYFIHKCKGPCVD-KE 184 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 E+ Y ++ V FL K +++ ++++M AS++L FE AA+ RD +A+ ++E+Q Sbjct: 185 DEKRYLNHIDDVVKFLENKSEKIPNWVLAKMNDASKDLNFEMAAKYRDYYRALSVISERQ 244 Query: 244 FVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V+ T GDDLD+I ++ + V F+R GK++ + K S+++ +F+ Q Sbjct: 245 NVTETGGDDLDIIAMSKGMNSIIIQVFFMRMGKIVDREHFIIKNDFMETDSDIMSSFIKQ 304 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 FYL + +P EIL+ + +D +++ LS K+ + G + + +A NA Sbjct: 305 FYLD---IMYVPKEILVQYMPADFDSISEFLSRKKKSKVYIHNPKLGKKKELVDMASRNA 361 Query: 363 ATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 ++ + L +L L +V R+EC+DIS+T G +V S VVF+ Sbjct: 362 LDMRIKYDKRVERKERKKSSGINQLMDILNLKDVFRVECYDISNTSGVLSVGSMVVFEGG 421 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------IPDVILIDGG 468 P EYR++ I + DDYA+ +VL RR + +++ + +PD+IL+DGG Sbjct: 422 IPTPKEYRKFKIKTVVGSDDYASHREVLTRRLKRGLEEKEKGNTQTGFGSLPDLILMDGG 481 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQ+ AK V L +S + + G+ K E ++ P Sbjct: 482 KGQVTIAKEVIDGLGLSIE-----VAGLVKDDKHTTRA----IVYNNEEIAINRRDPVYK 532 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 +I I++E+H AI HRK T+ L+ I+GVG K R+ L K+ + ++ ASVE Sbjct: 533 LIYEIQEEAHRFAINYHRKLMQNTMKTTELDNIKGVGEKTRKNLYKHFKTISNIKKASVE 592 Query: 589 EIAKVPGISQGLAEKIFWSLK 609 E+ +VP + + A +I+ + Sbjct: 593 ELMEVPLVGKVQALEIYKYFR 613 >UniRef50_Q24WC0 UvrABC system protein C n=16 Tax=Firmicutes RepID=UVRC_DESHY Length = 607 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 210/608 (34%), Positives = 331/608 (54%), Gaps = 36/608 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + +PGVY M DA G +IYVGKAK LK R+ SYF + + KT+ +++ I Sbjct: 20 LREKLSLLPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYFTGS-HNGKTQLMISLIADF 78 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + +T +E EALLLE N IK + P+YN+LLRDDK+YPFI ++ + HPR+ + R K G Sbjct: 79 ETIITDSEVEALLLECNLIKKHNPKYNILLRDDKTYPFITITDEAHPRILVTRQVKKGAG 138 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +Y+GP+PN A +E LL ++FP R+C ++PCL Y +G+CLGPC + V +E Sbjct: 139 KYYGPYPNATAAKEAARLLNRLFPFRKCRQIP----NKPCLYYHLGQCLGPC-QVDVPKE 193 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 Y + + FL G +L L +M+ AS+NLEFE A RD ++ +++V EKQ ++ Sbjct: 194 AYDKIRKEAAAFLKGDQGAILKALEKKMKEASENLEFERAKEYRDLMEDLKKVGEKQNIT 253 Query: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D DV+G A+ C+ + ++RQGK+L ++ P E E +F+ QFY Sbjct: 254 LNDFVDRDVVGYAYTQDQLCIQIFYLRQGKLLSRDNFI--FPYYEEPEEAFVSFLAQFYT 311 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + S LP EILL D ++L + +G + +++A NA T Sbjct: 312 ESSA---LPQEILLP--PLDISVLTKLF--------PMVVPQKGQKRDLVQMAMENAQTT 358 Query: 366 LTSKLSQQ----STVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L ++S + + Q L + + L +P ++ +E FDIS+ G +VA + F P Sbjct: 359 LHEQISIEIRNLTECTQALAEIGNALGIPSLRTIESFDISNIAGTHSVAGMIQFLDGKPN 418 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA 480 R++YR++ I + DD A+M+QV+ RRY + ++ +PD+IL+DGGKGQ+ A Sbjct: 419 RSQYRKFKIQPMPNMDDTASMHQVIERRYARLQQENLPLPDLILVDGGKGQIHAALAALH 478 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L+ + + G+ K + + SL S +++ I++E H Sbjct: 479 SLNAA-----IPVAGMVKNDKHQTSA---LIDAMDRIHSLDRRSAGFRLLERIQNEVHRF 530 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HR++RAK S L+ I GVGPKRRQ LLK+ + +R A++EE+ + G+ Sbjct: 531 AITFHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEELQQ-SGLPAPA 589 Query: 601 AEKIFWSL 608 A ++ Sbjct: 590 AAAVYQHF 597 >UniRef50_A4XIQ3 UvrABC system protein C n=2 Tax=Clostridia RepID=UVRC_CALS8 Length = 593 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 203/608 (33%), Positives = 334/608 (54%), Gaps = 22/608 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + L + + PGVY M D G VIYVGKA +L+ R+ YF+++ + KT +V +I+ Sbjct: 2 LTLQEKLANLPTTPGVYMMKDENGKVIYVGKAVNLRNRVRQYFQNSDMTPKTRLMVKKIK 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 + VT TE EAL+LE N IK Y+P+YNVLLRDDK+Y +I ++ + PRL R + Sbjct: 62 DFEYIVTDTEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITNEMFPRLVTTRKVEKD 121 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEGL 182 +YFGP+ +GY+V++T+ LL+ +F +R C+ + RPCL + I RCLG C +G Sbjct: 122 GAKYFGPYVSGYSVKQTIELLKSLFMLRTCKRKFPDQLGKGRPCLNFYIERCLGVC-KGD 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + EEEY + VE LSGK D+++ +L +M + NL FE+A I+++I ++ ++ K Sbjct: 181 IPEEEYQKLVEKAVKVLSGKGDEIVEELKKKMFEYADNLMFEKAQEIKNKITSLEQIITK 240 Query: 243 QFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V D DVI A D+ C+ VL IR GK++ + K EV E F+ Sbjct: 241 QKVIYADDRSEDVINYAEDSSNICIVVLVIRNGKLINKEEFVLKN-----DEEVFERFLE 295 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y S + ++P EI+L + + + + +L G K + +G++ + L++A+ N Sbjct: 296 QYY---SDVVSVPKEIILPHEVGNGENIEKMIEKLYGFKAKIVVPKQGEKKQLLEMAKKN 352 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGP 420 A +L +K ++ + L L ++L + +++++E +DIS+ G V + VVF+ Sbjct: 353 AEISLVNKQRIENYYIEALLHLKNLLGIEHDIEKIESYDISNLAGADNVGTLVVFEDGKF 412 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + YR++ + DD ++ +VL RR+ ++PD+ILIDGG+ Q+ A V Sbjct: 413 NKDLYRKFKLKSFEGQDDIRSVKEVLTRRFTNLEKHGRLPDLILIDGGQNQVNAAVEVLR 472 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L + + G+ K K + ++ +G+ ++ DS +I I++E+H Sbjct: 473 SLGFN-----IPVAGMVKDDRHKTR-DLIY---KGQELNIQRDSLVFKLISTIQEETHRF 523 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A+ HR+ R K S L+ IEG+G KR+ L + G + LR AS+EEI K I + Sbjct: 524 AVKYHRELRKKHLYESILDEIEGIGEKRKIKLFRIFGSIDNLRKASIEEIVKAADIPYDI 583 Query: 601 AEKIFWSL 608 A KI + Sbjct: 584 ALKIKEKI 591 >UniRef50_UPI0000E87CD9 excinuclease ABC, C subunit n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87CD9 Length = 580 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 271/590 (45%), Positives = 381/590 (64%), Gaps = 13/590 (2%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 82 M + +IY+GKAKDLKKR+ SYF S +T +V I I+ TVT+TE EAL+LE+ Sbjct: 1 MLNKAEDIIYIGKAKDLKKRVLSYFNKTQPSPRTRLMVGSIASIEFTVTNTEAEALILEN 60 Query: 83 NYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETL 142 N I+ + PRYNV+ RDDKSYP++ ++GD PR+ HRG + +YFGPFPN AVR+++ Sbjct: 61 NMIRSFMPRYNVIFRDDKSYPYLAITGDKFPRIRFHRGLQKIDTKYFGPFPNSNAVRQSI 120 Query: 143 ALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGK 202 LLQK+F +R CENSV+ NRSRPCL++QI RC PCV GL+ E+EY V LFL GK Sbjct: 121 QLLQKVFMLRTCENSVFNNRSRPCLEHQIKRCTAPCV-GLIEEDEYGADVNQANLFLDGK 179 Query: 203 DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN-TGDDLDVIGVAFDA 261 D +V+ L +M S+ FE AA RD+IQ++R+V KQFVS+ + +D D+I A + Sbjct: 180 DSEVIGNLTKKMNEQSEAFNFERAAIFRDRIQSLRQVRLKQFVSDFSENDADIIAFAEAS 239 Query: 262 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 321 G C +V+ IR G+ LG +++FPK G +++TF+ Q+Y P +++ Sbjct: 240 GKICANVVMIRGGRHLGDKTFFPKNHDGHIEESIIDTFITQYYDLHK-----PPPVIVTE 294 Query: 322 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 381 N L+ + + K+ + ++ GD+ +L +A+ NA +L K ++Q++ +RL Sbjct: 295 NKVSNELVKEFFAIKQYGKVRLLSRLTGDKKNWLLMAKKNAQISLEQKNNEQASQVERLL 354 Query: 382 ALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYA 440 AL ++L LP+ V R+EC+DISHTMGE TV SCVV+D +YR+YNI ITPGDDY Sbjct: 355 ALRALLGLPDHVNRIECYDISHTMGESTVGSCVVYDKYEMQNKDYRKYNIKNITPGDDYG 414 Query: 441 AMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKG 499 AM QVL RR+ + ++ I PD++LIDGGKGQ AK + + ++ L+GV+KG Sbjct: 415 AMKQVLERRFKRMAEEDAIKPDLVLIDGGKGQFGVAKKIMEDNGIT----DIYLVGVSKG 470 Query: 500 ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLE 559 ADRKAG E L + ++ P+ H+IQHIRDESH AI GHR KRAK + +SS+E Sbjct: 471 ADRKAGKEKLIIGEDKVLDTVNPEDLGFHLIQHIRDESHRFAITGHRAKRAKNRMSSSIE 530 Query: 560 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 +EGVG K+R+ LL Y GGL+G++NA VEE+ V GI+ LAEKIF Sbjct: 531 EVEGVGAKKRKSLLVYFGGLEGVKNAPVEELMLVEGINARLAEKIFSYFH 580 >UniRef50_A1AWP2 Excinuclease ABC subunit C n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AWP2_RUTMC Length = 594 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 282/607 (46%), Positives = 379/607 (62%), Gaps = 20/607 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + LK +T+ PGVY+M+D VIYVGKAK+LK R+SSYF K LVA I+ Sbjct: 3 IQEKLKNLTTNPGVYQMFDKQDQVIYVGKAKNLKNRVSSYFVKTHEQNKARVLVANIKDF 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 V VT TET+ALLLE IK + PRYN+LL+D KSYP+IF+S D HPR+ +RG K Sbjct: 63 KVIVTATETQALLLESELIKQHMPRYNILLKDSKSYPYIFISHDKHPRVGFYRGKKCQSA 122 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +YFGP+P+ + VR++L+LL+KIF +RQC NS YR+RSRPCL+YQIG C PCV +S+E Sbjct: 123 QYFGPYPSAHVVRDSLSLLKKIFKVRQCTNSTYRSRSRPCLEYQIGLCSAPCV-NKISDE 181 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 Y V + LFLSGK + L ++ +M+ AS+NLEFE AAR+RDQ+ +R + E Q S Sbjct: 182 NYQSDVLMMSLFLSGKGRETLERVSKKMQLASKNLEFELAARLRDQLIDLRTIQE-QHTS 240 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 ++ +DLDV+ +A G+ V VLFIR GK +G PK ++ +V+ F+ +YL Sbjct: 241 SSSNDLDVVSIAQQDGVNGVEVLFIRSGKQIGQVFILPKNSNNQDIKQVLSAFLPLYYLG 300 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + P +IL+ LSDK ++A +L+ ++ P D+ YL +A A L Sbjct: 301 ----KNTPKQILISHKLSDKKIIASALNT------HIIDTPNKDKKHYLNIANLTAKENL 350 Query: 367 TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 L + L L +L L ++ +ECFDISH MGE TVASCVVF+ P ++Y Sbjct: 351 NQNLLSKFRKKSTLVHLQVILGLGKLPNYIECFDISHMMGEATVASCVVFEKGVPKASQY 410 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVFAELDV 484 R+++I I PGDDYAAMNQV+ RRY K + D +PD+I IDGG GQ QA V + V Sbjct: 411 RQFDIKNIIPGDDYAAMNQVVYRRYSKLLKDKKPLPDIIFIDGGLGQFNQAIMVMNSIGV 470 Query: 485 SWDKNHPLLLGVAKGADRKAGLETL--FFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 + L+G+AKG +RKAGLETL + +L P PAL ++ HIR+ESH AI Sbjct: 471 ----DDVQLVGIAKGENRKAGLETLITIKDDNVNKINLLPYDPALMLVNHIRNESHRFAI 526 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRKKRA + TS LE+I+GVG RR LL Y GGLQ ++ AS+ EI KV GI+ LA Sbjct: 527 KNHRKKRASRRTTSILESIKGVGKLRRMALLNYFGGLQEIKKASIHEIQKVSGINLVLAT 586 Query: 603 KIFWSLK 609 KI +K Sbjct: 587 KIVKKIK 593 >UniRef50_B7K124 Excinuclease ABC, C subunit n=5 Tax=Cyanobacteria RepID=B7K124_CYAP8 Length = 617 Score = 636 bits (1642), Expect = 0.0, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 338/616 (54%), Gaps = 26/616 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQ 64 D + LK + S+PGVY M + GG ++Y+GK+K L+ R+ SYFR + S + +V Q+ Sbjct: 13 DLETRLKELPSEPGVYLMRNQGGEILYIGKSKKLRSRVRSYFRPSQPHSPRIGLMVQQVA 72 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK- 122 I+ VT TE EAL LE N IK +QP +NVLL+DDK YP++ ++ T+PR+ + R + Sbjct: 73 DIEFIVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSQTYPRIFITRKRRL 132 Query: 123 -HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + + Y+GP+ + + +R+TL L++++FP+RQ ++ + RPCL Y IG+C G C +G Sbjct: 133 NNERDRYYGPYVDTHLLRQTLQLVKRVFPLRQRPKPLF--KDRPCLNYDIGKCPGVC-QG 189 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L+S E+Y + VE V + G+ ++L +L +ME A+ L FE+AA IRDQ++A+ +T Sbjct: 190 LISPEDYHKIVEKVAMIFQGRTGELLEKLHQQMEKAATELRFEQAAMIRDQLKALNALTV 249 Query: 242 KQFVSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 Q VS D D I +A D C+ + IR G+++G +F T +++ Sbjct: 250 DQKVSLPDDTISRDAIALAKDTKHCCIQLFQIRAGRLVGRLGFFADAESAT-PGAILQRV 308 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Y Q + +P EIL+ + L + +LA LS+ G+K+ + R +A+ ++L Sbjct: 309 LEDHYWQ-ADGVEIPSEILVQYELPESEILAQWLSDRKGKKVTITVPQRQTKAQLIELVE 367 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDAN 418 NA L L LA +L LP++ R +E +DISH G VAS VVF Sbjct: 368 RNANYELERTQRTTERNLISLEDLAQILDLPDLPRRIEGYDISHIQGSNAVASQVVFIDG 427 Query: 419 GPLRAEYRRYNIT----GITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLA 473 P + YR Y I I DD+A+M +V+ RR+ + PD+I+IDGGKGQL+ Sbjct: 428 IPAKQHYRHYKIKNPNVTIGHSDDFASMAEVIGRRFRHNQAKNIDYPDLIMIDGGKGQLS 487 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 + E ++ +AK E +F E + P + +++ + Sbjct: 488 AVVAILEE---LNLLETLEVISLAKQR------EEIFLPGESYPLDTNAEQPGVQLLRRV 538 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H A+ HR++R K S L+ I G+G +R++ LL Y + +R AS+E++ +V Sbjct: 539 RDEAHRFAVSFHRQQRLKKSRRSRLDEIPGLGFERQKQLLAYFHSIDYIREASIEQLQQV 598 Query: 594 PGISQGLAEKIFWSLK 609 GI + LA +I+ Sbjct: 599 SGIGKALATEIYRYFH 614 >UniRef50_UPI00016BFB47 excinuclease ABC, C subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB47 Length = 602 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 200/606 (33%), Positives = 327/606 (53%), Gaps = 28/606 (4%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQIDVTVT 71 + + PGVY M D VIYVGKAK+LK R+S YF+ N S KT +V+ I + VT Sbjct: 3 NLPTTPGVYLMKDDLDEVIYVGKAKNLKNRVSQYFQKNKNHSAKTIKMVSNIASYEYIVT 62 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFG 130 +TE EAL+LE N IK Y P+YN+ L+DDK YP+I ++ PR+ + R +YFG Sbjct: 63 NTEVEALILECNLIKKYSPKYNIRLKDDKRYPYIKINIKSPFPRIQVVRKIIKDDAKYFG 122 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 P+ + ++ E + L+++++ +R + + ++R CL + IGRC GPC++ ++ EY Sbjct: 123 PYTDATSMWEMIELIKQLWQLRSXNKKLPKDIGKNRECLNFHIGRCSGPCIKN-ITAREY 181 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 + V+ + FLSG + +T+L RM AS + FE AA +RDQ+ A+ ++ +KQ V Sbjct: 182 HKIVDEIVEFLSGDYRKXVTELKQRMSEASDAMNFELAATLRDQLIAIAKLEQKQTVDTA 241 Query: 249 GDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D D++ A A + V F+R GK++G + + G E + F+ FY + Sbjct: 242 SKDNQDIVAYAEGTNDALIQVYFVRSGKLVGREHFILRDATGDEAKTLFRNFILXFYAEA 301 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P EI++ ++ LL + LS+ G ++ + + +G + L+LA+ NA Sbjct: 302 T---FVPREIVVQVIPAEVELLENYLSDKRGARVVITSPKKGTKFNLLELAKKNAELTFF 358 Query: 368 SKLSQQSTVHQ----RLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLR 422 + Q + L+ L L L + + R+E FDIS+T G V + VVF+ P + Sbjct: 359 EQGDQLKKKLENTKLALSQLQEALNLEKPIIRIEAFDISNTSGVYPVGAMVVFENGVPKK 418 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAEL 482 ++YR++ I + +DYAAM ++L RRY A ++ K+PD+I +DGGK Q+A AK V + Sbjct: 419 SDYRKFKIKTVRGQNDYAAMEEMLSRRYKNA-EEGKVPDMIFMDGGKSQVAAAKKVLVKY 477 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 ++ L+ G+ K + E LP S ++ I+DE H AI Sbjct: 478 NL-----EILVCGMVKDEKHRTFG----LLYEDNEIVLPKFSKLFKLVTRIQDEVHRFAI 528 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRK R S L+ I+GVGP R+++LL + L+ AS+EE+ + I + +A+ Sbjct: 529 EYHRKLRGN--IHSVLDEIKGVGPVRKKILLLNFKSVYNLKEASLEELEQY--IPKDVAK 584 Query: 603 KIFWSL 608 ++ Sbjct: 585 NVYTYF 590 >UniRef50_A0Q5Q7 UvrABC system protein C n=18 Tax=Francisella RepID=UVRC_FRATN Length = 612 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 260/609 (42%), Positives = 385/609 (63%), Gaps = 9/609 (1%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 S FD K+FL +T+ GVYRM D G +IYVGKAK+LK R++SYF KT +V Sbjct: 6 SKDFDLKSFLANLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVE 65 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 QI +I++T+T ++ EA LLE+N IK ++P+YN+L +DDKSYP++ +S D PR++ +RG Sbjct: 66 QIARIEITITPSDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVISRDKFPRVSFYRGK 125 Query: 122 K-HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + KG+ FGP+ + +V+ TL +QKIFPIRQCENS Y++R RPCLQYQI RCL PCV Sbjct: 126 SAYKKGQCFGPYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCV- 184 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GLVS+++Y +Q+ ++ FL+GK VL ++ ++M AS+++E+E+A RDQ+ +R++ Sbjct: 185 GLVSQQQYDEQLAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQ 244 Query: 241 EKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 ++Q V DVIG+ A + +L I+ G V+ R + G + + ++ F Sbjct: 245 QQQIVDIQEDKTFDVIGIYMQDSYASIALLQIQNGDVVADRHWSIDAK-GQDKTSIMHAF 303 Query: 300 VGQFYLQGSQMRTLPGEILLD-FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 + FYL P I+L +D T L +S+S+ G+ IN P D ++LKLA Sbjct: 304 LSHFYLGDEIRNIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLA 363 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 NA L S +S +RL +L L+L + +KR+ECFDISH GE T+ASCVV+ Sbjct: 364 EVNARQKLNIYTSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTD 423 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 G R +RRYNI I GDDYAA+ Q + RR ++ +PDV++IDGGKGQ+ QA+ Sbjct: 424 EGEDRKSHRRYNIKDIKAGDDYAAIYQAVSRRVSSGLEADNLPDVMIIDGGKGQIHQAEA 483 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 VF E + ++ L+ + KG +R +G E ++ + ++L +P +++ +RD + Sbjct: 484 VFREFGI---QDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVRDSA 540 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 HDHAI G RKK + + +S +E IEGVGPKRR+ L+ Y GG Q L ASV+EIAKV GIS Sbjct: 541 HDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVKGIS 600 Query: 598 QGLAEKIFW 606 + LA++I+ Sbjct: 601 KKLAQEIWE 609 >UniRef50_A8ZVJ2 Excinuclease ABC, C subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVJ2_DESOH Length = 626 Score = 633 bits (1633), Expect = e-180, Method: Composition-based stats. Identities = 231/605 (38%), Positives = 350/605 (57%), Gaps = 11/605 (1%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 L ++PGVY M D G +IYVGKA +LKKRL+SYF + KT L+ ++ D Sbjct: 20 EKLAGAPARPGVYLMKDGAGAIIYVGKAFNLKKRLASYFVKKERLDLKTGLLMERVVDFD 79 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 VT TE EAL+LE + I+ ++PRYNVLL+DDK YP + + +P L + R + Sbjct: 80 TIVTATENEALILEASLIRRHKPRYNVLLKDDKRYPSLRIDPRQPYPALEIVRKTRPDGA 139 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGPF + AVRETL ++ K F +R+C V++ RSRPC+ +Q+G CLGPC V E Sbjct: 140 VYFGPFSSARAVRETLKVVDKTFRLRKCRGKVFKKRSRPCINFQMGLCLGPCFYD-VPEN 198 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +YA+ V V LFL G+ ++++ L RM+ A++N EFE+AA +RD++ A+ +V EKQ V Sbjct: 199 DYAEAVREVSLFLKGRATELVSDLRVRMKGAAENQEFEKAALLRDRLFAIEKVIEKQVVV 258 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D DVI VA + + V +L +R+G + G+R +F + +++ + TF+ Q+Y Sbjct: 259 TPDFADRDVIAVAEEGRRSVVALLQVRKGVLSGTR-FFHFEELLSSVADSLATFMVQYYT 317 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P EIL D +AD L +LA +++N+ RG++ +K+AR NA Sbjct: 318 E---PGRVPDEILTDGTPFGGPWIADHLRDLAEKRVNMAVPRRGEKFLLIKMARENAQNE 374 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAE 424 L + + L LA L L +V R+ C D SH G TVA+ VVF P + Sbjct: 375 LAAAALGARKHQKTLERLARKLGLSDVPARIACVDNSHLAGTGTVAAVVVFADGVPDPSA 434 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YRRY + G+ DDYAAM QVL RR+ DD+ D++L+DGG+GQL A V E + Sbjct: 435 YRRYRLAGVPAADDYAAMKQVLVRRFAAGADDAGPVDLLLVDGGRGQLNIAAAVLQEAGL 494 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 + + K ++ + ++ +L P PAL +++ IRDE+H AI Sbjct: 495 AGKMGVAAIS--KKDEAKEETADKVYVPGRRNPVNLGPADPALFLLEEIRDEAHRFAIDY 552 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 RK+R ++ S+L+ I G+GP+R++MLL G ++G+R ASVE++A +PGI+ +A +I Sbjct: 553 QRKERKRISLRSALDDIPGIGPQRKRMLLDRFGTVEGVRAASVEDLAALPGITGSMAGQI 612 Query: 605 FWSLK 609 L+ Sbjct: 613 REHLR 617 >UniRef50_Q6MKS2 UvrABC system protein C n=1 Tax=Bdellovibrio bacteriovorus RepID=UVRC_BDEBA Length = 630 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 217/622 (34%), Positives = 340/622 (54%), Gaps = 30/622 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQ 64 + + +K +Q GVY M + +IY+GKAK+L+ R+ SYF S S KT LV+ I Sbjct: 8 EVRDKVKEFPTQSGVYLMKNTADKIIYIGKAKNLRNRVRSYFNDSKDHSPKTRLLVSNIC 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 +++ +T TE EA LLE + IK ++P+YN+ LRDDK+YP+I S GD PRL + R K Sbjct: 68 EVEYILTKTEVEAFLLEASLIKKHRPKYNIRLRDDKAYPYIRFSWGDQAPRLYLARKVKK 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 YFGP+ +G AV T+ L + F IR C ++V+++R+RPC+ YQIGRC PCV+ + Sbjct: 128 DGSLYFGPYTSGLAVHGTIKFLNRTFKIRDCTDAVFKSRTRPCMTYQIGRCTAPCVK-YI 186 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + E+Y +VE +LFL G++ +V+ + +M A+ +FE AAR+RD I+A++ + +KQ Sbjct: 187 TMEDYRNEVEGAKLFLKGQNKKVIKSMTEKMMGAADEEKFEVAARLRDSIEAIKAILQKQ 246 Query: 244 FVSNT--GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSR-SYFPKVPGG---TELSEVVE 297 V N D D +G D + + IR G+V+G+R Y P + E + Sbjct: 247 AVINDTSEKDQDALGYYGDERGCLIETVHIRAGRVIGTRPHYLPHFDPNDAVEDPREWLV 306 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSD--KTLLADSLSELAGRKINVQTKPRGDRARYL 355 F+ Q+Y +P E+LL ++ + L+ + L E +G K V+ + Sbjct: 307 DFLNQYYEDN----FIPDEVLLPLDIGNDLTKLMEEVLKERSGSKTTVRFATDERGRNLV 362 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVV 414 +A NA + +S+ + L + LPE +R+EC+DIS G +TVAS VV Sbjct: 363 DMAHENAKSHFLKYVSKSEEKLRGLEEIKERFNLPERPRRIECYDISTFQGAETVASQVV 422 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQ 474 F+ P + YRRY I + +D+A+M +VL RR+ D P +I+IDGGKGQL+Q Sbjct: 423 FEDGVPAKEHYRRYKIKTVQGINDFASMYEVLSRRFKHTEYDD--PQLIVIDGGKGQLSQ 480 Query: 475 AKNVFAELDVSWDKNHPLLLGVAK--------GADRKAGLETLFFEPEGEGFSLPPDSPA 526 A + E+ + ++G+AK + ++ E F ++ A Sbjct: 481 AMKILEEIG----RKDIPVVGLAKARTESDFQKQEVESTEERFFLPGRSNPVIFKHNAEA 536 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L+++ IRDE+H AI HRK R S L+ + G+G KR+++LL + ++ A Sbjct: 537 LYILSGIRDEAHRFAITYHRKLREGTSLESELDYVVGLGEKRKKVLLTQFNSIDEIKMAD 596 Query: 587 VEEIAKVPGISQGLAEKIFWSL 608 EEIAK+ G ++ LAE+I L Sbjct: 597 PEEIAKLKGFNRVLAERILLQL 618 >UniRef50_A2RLW6 UvrABC system protein C n=11 Tax=Bacilli RepID=UVRC_LACLM Length = 669 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 213/659 (32%), Positives = 330/659 (50%), Gaps = 74/659 (11%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 KA L+ + PG Y D GTVIYVGKAK+LK R+ SYF + + KTE LV++I+ Sbjct: 4 TIKAKLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGS-HNTKTELLVSEIED 62 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ V + E+L+LE N I+ Y+P+YN++L+DDK YPF+ ++ + +PRL + R + Sbjct: 63 LEWIVVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITNEKYPRLLVVRKVQKDG 122 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+P+ A E LL +IFP R+C + + C + I +CL P V V Sbjct: 123 ATYFGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCP-VVNHVDP 177 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 + Y + V+ FL+G D +++ +L +M +AS N+EFE+AA RD I+A+ + KQ V Sbjct: 178 QVYKDMTQEVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRV 237 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 N D DV G D G CV V F+RQGK++ P + E T++GQFY Sbjct: 238 MNQDLKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNM--FPYYNDAEEDFLTYIGQFY 295 Query: 305 LQGSQMRTLPGEILLDFN--------------------------------------LSDK 326 + M +P EI + + SD+ Sbjct: 296 QDNNHM--MPREIFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQ 353 Query: 327 TLLADSLSELAGR------------KINVQTKPRGDRARYLKLARTNAATALTSKLSQQS 374 + S+ +L K + RG++ + + +A NA T L K Sbjct: 354 KDVEQSIVKLDKELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAE 413 Query: 375 ----TVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI 430 + + L +L +P+ R+E FD S+ MG V++ VVF P + +YR+Y I Sbjct: 414 RDILKTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKI 473 Query: 431 TGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 + DDYA+M +V+ RRY +A+ + +PD+I +DGG GQ+ AK V EL ++ Sbjct: 474 KTVVGADDYASMREVMTRRYSRALKEETALPDLIAMDGGAGQVNIAKEVLRELGLA---- 529 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 + G+ K + L F E L S ++ I+DE H AI HR+ R Sbjct: 530 -IPVAGMQKNDKHQTS--ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITFHRQLR 586 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 K +S L+ I G+GPKR+Q LL L+ + A+V+E+A+ G+ +AE++ +L Sbjct: 587 GKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERVKNTL 644 >UniRef50_Q03F33 UvrABC system protein C n=7 Tax=Firmicutes RepID=UVRC_PEDPA Length = 594 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 213/608 (35%), Positives = 335/608 (55%), Gaps = 30/608 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + +PG Y+M + +IYVGKAK+LK R+ SYF+S+ KT LV++I Sbjct: 6 IEHKLALLPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYFKSSHE-GKTAKLVSEIADF 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 D VT ++ EA LLE I+ +QP YN+ L+ YP+I ++ + PR+ + + G Sbjct: 65 DYIVTSSDKEAFLLEITLIQKFQPYYNIKLKKGTGYPYIKITNEKDPRMEIVSSVRRDGG 124 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+PN YA ETL L+K++P+R+C + RPCL Y +G+CLG C + V +E Sbjct: 125 FYFGPYPNVYAAEETLHFLEKVYPLRRCNGF----QGRPCLYYHMGQCLGACFQ-EVPKE 179 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FV 245 EY QQ+ ++ FL G ++ L ++M+ AS+ +EFE AA IRDQI + EKQ + Sbjct: 180 EYDQQIAKIKSFLRGNVAKIKQSLQTKMQKASEAMEFERAADIRDQIHYIEVTVEKQKII 239 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 SN D+ D G + + FIRQ +++ P T++++ + +F+ QFY Sbjct: 240 SNDSTPRDLFNFYLDKGWLSIQIFFIRQSRLIKREKRL--FPIATDVNDELSSFILQFY- 296 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 ++ + LP EIL+ L +K ++E+ G + V+T RG++ L+LA+ NA Sbjct: 297 -NNKNKVLPNEILVPSGLDNK-----IMAEILG--VPVRTPQRGEKKNLLELAKENAQIT 348 Query: 366 LTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K +S + + L +PE R+E FD SH G + V++ VVF P Sbjct: 349 LEEKFRLMELDESKTTGAMKEITDALGIPEGHRIEAFDHSHIQGSELVSAMVVFTDGKPD 408 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFA 480 + YR++ + + D+ A+ +V+RRRY + + + + +PD+IL+DGG QL AK+V Sbjct: 409 KKMYRKFKLNTVDHADEAASTREVIRRRYVRLLKEKQSLPDLILMDGGDIQLNAAKDVL- 467 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 V+ H + G+ K K L F + + L P S +++Q I+DE H Sbjct: 468 ---VNELSLHIPVAGMVKNDKHKTS--DLIFGSQDQRVQLDPKSQGFYLVQRIQDEVHRF 522 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HR+ AK S L+ I+GVGPK R LLK G L +R+A+++EI ++ GI + + Sbjct: 523 AITFHRQLHAKNSLASQLDLIQGVGPKTRNKLLKSFGSLNKIRDANLKEIEEL-GIPEKV 581 Query: 601 AEKIFWSL 608 A+ I SL Sbjct: 582 AKTIKVSL 589 >UniRef50_Q01S04 UvrABC system protein C n=2 Tax=Acidobacteria RepID=UVRC_SOLUE Length = 623 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 207/608 (34%), Positives = 324/608 (53%), Gaps = 19/608 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQI 63 + + + + PGVY D+GG VIYVGKAK L+ R+ SYF + KT L+ + Sbjct: 1 MELRDKVGQLPFSPGVYLYKDSGGKVIYVGKAKSLRNRVRSYFSEDKLGDIKTGTLITEA 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 ID + E EAL LE+N IK Y+PR+N+LLRDDK+YP++ ++ + +PR+ + R + Sbjct: 61 CDIDYILVDNEKEALALENNLIKQYKPRFNILLRDDKTYPYVKVTNEKYPRVYVTRRLRK 120 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +YFGPF + + + F + C+ + R +PCLQ+ I RCLGPCV+GL Sbjct: 121 DGAQYFGPFFPANLAHRLVHFIHRHFQVPSCKVDLTRFHPKPCLQFHIHRCLGPCVQGLT 180 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 ++E YA V VRLFL G+ + L +RME AS + FEEAA +RD I V + E+Q Sbjct: 181 TDEAYAAAVRDVRLFLDGRHSDLARGLRARMEAASLEMRFEEAAGLRDLITTVEEIEERQ 240 Query: 244 FVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 ++ GDD+D+ V + + +++ +R G+++ R F + + S + + + Q Sbjct: 241 KMAAAKGDDVDIFAVYAEPPLVALNIFHLRNGQIVDRRELFWEDQFEYDESLFLSSLLKQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 YL + +P EI + D L + L+E R++ ++T RG + L L TNA Sbjct: 301 IYLDQ---QFVPAEIHVPVEFEDLEALEELLTEKRQRRVEIRTPQRGQKKALLGLVETNA 357 Query: 363 ATALTSKLSQQSTVHQRLTA-LASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 + ++ + + L L LP+ R+ECFDISH G VAS VV++ Sbjct: 358 KHSFDARFRVLKPSSRAIQEALQDALNLPDAPSRIECFDISHIQGTDKVASMVVWEDGKM 417 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVF 479 +++YR++ I + DD+A+M +V+ RRY + ++ +P ++LIDGG GQL A Sbjct: 418 KKSDYRKFIIRTVVGNDDFASMREVVTRRYSRLQEEKQPMPGLVLIDGGLGQLHAAAEAL 477 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 + ++ L +AK + F E E L SP LH++Q IRDE+H Sbjct: 478 EAIGIA----DQPLASIAKREE-----IIYVFGQEDEPVVLDRFSPILHLVQSIRDEAHR 528 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 A+ HR R + TS L+ I GVG K Q LLK G L+ +R A+ ++A V G + Sbjct: 529 FAVTFHRSLRNTRQLTSELDAIRGVGAKTVQKLLKEFGSLERVRAATETQLATVVG--RA 586 Query: 600 LAEKIFWS 607 A+++ Sbjct: 587 AAKRVIAH 594 >UniRef50_B2A711 Excinuclease ABC, C subunit n=2 Tax=Firmicutes RepID=B2A711_NATTJ Length = 685 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 224/666 (33%), Positives = 356/666 (53%), Gaps = 77/666 (11%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D + L + +PGVY M G VIYVGKA +LK R+ SYF S + K + + +I Sbjct: 5 DLQEKLANLPEKPGVYLMKSKQGRVIYVGKAINLKNRVRSYFNSGNKAVKVQVMTPKISD 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHA 124 I+ VT +E EAL+LE+N IK Y+P+YNV LRDDK+YP++ ++ + +PRL + R Sbjct: 65 IETIVTDSELEALILENNLIKKYRPKYNVSLRDDKNYPYLKITTEEDYPRLIIARRM-GK 123 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLV 183 G YFGP+PN AVRET+ LL+K+FP+R C+ +N+ RPCL Y I RCL PC E V Sbjct: 124 HGRYFGPYPNAGAVRETIKLLRKLFPVRTCKGETPKNQGKRPCLNYFINRCLAPCNE-KV 182 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S +EY + ++ + L GK++++L +L +M A++ +EFE+AA R+Q A+ ++ +KQ Sbjct: 183 SRDEYREMIQDIISVLEGKEEELLNELERKMNLAAEEMEFEKAAEYRNQKAALEKIRQKQ 242 Query: 244 -FVSNTGDDLDVIGVAFDA------------GMACVHVLFIRQGKVLGSRSYFPKVPGGT 290 VS +D D+I + F+ ACV + +IR GK++G ++ Sbjct: 243 KIVSERREDYDIIALGFEEKIDDTSDTDDSTEEACVQIFYIRGGKLMGRNNFRVSTGALE 302 Query: 291 ELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD 350 +++ +F+ Q+Y Q +P +IL+ L++K L+ L+E K+ V+ RG+ Sbjct: 303 GAEDMLTSFIKQYYAQALH---VPKQILVSHPLTEKELIESWLAEKREGKVEVKVPQRGE 359 Query: 351 RARYLKLARTNAATALTSKLSQQSTVHQ----RLTALASVLKLPEVK-RMECFDISHTMG 405 + + + +A NA L + + + L LA L L E+ R+E +DISHT G Sbjct: 360 KYQLMNMAIKNAELELKQQELESEKERKMTEGALKELALKLSLSEIPFRVEGYDISHTQG 419 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK------- 458 E+TVAS VVF+ + +YR++ I DD+ AM +VLRRR+ +A + + Sbjct: 420 EETVASMVVFEGGKSKKKDYRKFRIRTTAGPDDFKAMEEVLRRRFHRAKKEEQEYLMAAE 479 Query: 459 -----------------------------------IPDVILIDGGKGQLAQAKNVFAELD 483 +PD+I+IDGGKGQL+ A V E+ Sbjct: 480 TKQDSEYDAREGNKDNISQYNSGTEYSEYDFKFAVLPDLIVIDGGKGQLSSAVKVMEEVG 539 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 S ++ +AK E +F P +S AL ++Q IRDE+H A+ Sbjct: 540 YS----QIPVISLAKRE------EEIFVPERSTSLKFPSNSEALKLLQRIRDEAHRFAVS 589 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 HRK R K TS L+ + +G +R++ L ++ L ++ AS++E+A +P +++ A+ Sbjct: 590 YHRKSRGKATLTSLLDEVPEIGSRRKKELFEHYSSLNEIKQASIDELANLPSMNKKAAKN 649 Query: 604 IFWSLK 609 + LK Sbjct: 650 LVTYLK 655 >UniRef50_A7HD93 UvrABC system protein C n=5 Tax=Bacteria RepID=UVRC_ANADF Length = 716 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 221/664 (33%), Positives = 330/664 (49%), Gaps = 65/664 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK--TEALVAQ 62 + + L + ++PG Y M D G V+YVGKA L+ R+ SYF ++ + L Sbjct: 3 ANLRKTLDELPAEPGCYLMKDRRGAVVYVGKASSLRSRVRSYFDASRGDDRAFVALLDEL 62 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HR 119 + ++V VT +E EA+LLE+ IK ++PR+N+ LRDDK + + L PRL + R Sbjct: 63 LGDVEVIVTRSEKEAVLLENELIKRHRPRFNIRLRDDKDFIVLRLDERHAFPRLEVRRAR 122 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + A YFGP+ + ++RETL ++ + F +R C + V+ +R RPC+ YQI RC PCV Sbjct: 123 EPRRAGARYFGPYSSASSIRETLRVVNRHFQLRTCTDHVFEHRKRPCILYQIKRCPAPCV 182 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 V E EY Q VE FL G++ +++ +L RM+ A+ L FE+AAR+RDQ+QAV R Sbjct: 183 YD-VPEAEYRQSVEDAIEFLEGRETELVERLHGRMDEAADALRFEDAARLRDQLQAVERS 241 Query: 240 TEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 EKQ V D DV+G+ + V VL +R GK+ SRSY P E + + Sbjct: 242 LEKQRVLMADRADRDVVGLYREGPDLVVQVLAMRAGKLQDSRSY-PFHEQEFPDEETLSS 300 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ +Y Q + P EIL+ ++ LAD LSE GR++ + T RG +A L++A Sbjct: 301 FLSLYYEQNAA----PEEILVPVEPAEVDALADVLSERRGRRVRLLTPQRGAKADLLEVA 356 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDA 417 NA S + Q L AL L L R MEC+DIS G V S V F Sbjct: 357 ARNAEQGFRSWHEKDERREQALAALTRALHLARPPRWMECYDISTFQGALAVGSGVSFRD 416 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P +A YRRY + G+ DD+A + +V+ RR +A+ + PD+++IDGGKGQL A Sbjct: 417 GEPDKACYRRYKVKGVAGQDDFAMLYEVVSRRLRRALGEGAFPDLLVIDGGKGQLNAALA 476 Query: 478 VFAELDVSWDKNH-------PLLLGVAKGA------------------------------ 500 +L V + L+G+AK Sbjct: 477 AAKDLGVPTKPSPGNEGAPFVELVGLAKSRLVDAPALGTTRVIGRRGRGGGASRAASGAA 536 Query: 501 ---------------DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 + E +F + L +S L ++ +RDE+H AI H Sbjct: 537 ALADAAEAQEHGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFH 596 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 RK R + S LE I G+G R++ LL++ G L+ ++ A+++EI++V G A +F Sbjct: 597 RKLRRERNFQSVLEEISGIGEGRKRALLRHFGALRRVKEATLDEISQVDGFGPKQARAVF 656 Query: 606 WSLK 609 Sbjct: 657 EFFH 660 >UniRef50_Q3M542 UvrABC system protein C n=11 Tax=Cyanobacteria RepID=UVRC_ANAVT Length = 627 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 208/628 (33%), Positives = 342/628 (54%), Gaps = 34/628 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEAL 59 + D +A L + +PGVY M D +IY+GK++ L+ R+ SYFR + + + Sbjct: 11 VKDPERLEARLSEIPPEPGVYFMRDGSDRIIYIGKSRKLRSRVRSYFREGYNKTERIATM 70 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 + +I+ VT TE EAL LE N IK +QP +NVLL+DDK YP++ ++ + +PR+ + Sbjct: 71 AKLVTEIEFIVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFIT 130 Query: 119 RGAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 R + K +Y+GP+ + +RE L + ++IF +RQ ++ + RPCL Y +GRC G Sbjct: 131 RKRQLGKEKDKYYGPYTDSGLLREILRISKRIFALRQRPQPLF--KDRPCLNYDLGRCPG 188 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 C + L+S EEY + V+ V + G+ +++ L +ME A++ L FE AARIRDQI + Sbjct: 189 VC-QQLISPEEYRKTVQKVAMVFQGRTQELIDILSEQMEKAAEALNFEVAARIRDQIAGL 247 Query: 237 RRVTEKQFVSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + +T +Q VS D D I +A DA AC+ + IR G+++G ++ + E Sbjct: 248 KSLTAEQKVSLPDDTVSRDAIALAADAQHACIQLFQIRAGQLVGRLAFVAE--SHAEPGA 305 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 +++ + + Y Q ++ +P EIL+ L D +LAD L++ GRK+ + T R +A Sbjct: 306 ILQRVLEEHY-QTAESVEIPAEILVQHELPDAEILADVLTQRKGRKVTIFTPQRQVKAEL 364 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 +++ NA L HQ LA++L LP++ R+E +DISH G VAS V Sbjct: 365 IEMVERNAQYELQRMQKLGDRNHQATQDLAAILDLPDLPHRIEGYDISHIQGSNAVASQV 424 Query: 414 VFDANGPLRAEYRRYNIT----GITPGDDYAAMNQVLRRRYGKAIDDSK--------IPD 461 VF P + YR Y I I DD+A++ +V++RR+ K +D + PD Sbjct: 425 VFIDGLPAKQNYRHYKIKNPTVTIGHSDDFASLAEVIQRRFRKYAEDPQLSRVGNPDWPD 484 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +I+IDGGKGQL+ V E+++ ++ +AK E +F E + Sbjct: 485 LIMIDGGKGQLSSVVAVLQEMNL---LEDLRVISLAKRR------EEIFLPGESQPLKTD 535 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 + P + +++ +RDE+H A+ HR++R+ S L+ I G+G R++ LL + + Sbjct: 536 AEQPGVQLLRRLRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLAHFRSVDY 595 Query: 582 LRNASVEEIAKVPGISQGLAEKIFWSLK 609 +R A+ +IA+VPGI LA+ I+ Sbjct: 596 IRQATPAQIAEVPGIGPHLAQAIYDYFH 623 >UniRef50_B2JFL2 Excinuclease ABC, C subunit n=2 Tax=Burkholderia RepID=B2JFL2_BURP8 Length = 740 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 276/712 (38%), Positives = 390/712 (54%), Gaps = 108/712 (15%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 ++++FD K L+ + PGVYR YD G V+YVGKA+DLKKR+SSYF L S + +V Sbjct: 34 VAEEFDPKKVLRQLPHMPGVYRYYDEQGAVLYVGKARDLKKRVSSYFTKTLLSPRIAMMV 93 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 ++I +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RG Sbjct: 94 SRIAKIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHQFPRMAYYRG 153 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV Sbjct: 154 SVDKKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCV- 212 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G V+EE+YA+ V FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ V Sbjct: 213 GAVTEEDYARDVSNASRFLLGRQSEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVL 272 Query: 241 EKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV--------PGGTE 291 +Q + GD D+D++ V G CV++ +R G+ LG ++YFP GG E Sbjct: 273 HQQAIEVGGDSDVDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTADEGGIE 332 Query: 292 LSEVV-----------ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELA--- 337 +V+ E +G + E + + D+ + Sbjct: 333 DGDVLLSAETASVIDVEAELGDESEDALSIDEAASEESAPEESDSEDVAEDADKKPRRAH 392 Query: 338 ----------------GRK----------------INVQTKPRGDR-----------ARY 354 G + +++ + G + + Sbjct: 393 GIESEVLEAFIAQHYLGNRVPPVLVVSHAPASRELVDLLIEQAGHKVTLLRQPQGQKRAW 452 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQTVA 410 L +A NA AL LS+Q + R +LA+ L + R+ECFDISHTMGE T A Sbjct: 453 LAMAEQNAKIALARLLSEQGSQQSRTRSLANTLSMECEDLAHLRIECFDISHTMGEATQA 512 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-------------- 456 SCVVF + +EYRRYNITGITPGDDYAAM QVL RRY K + Sbjct: 513 SCVVFHHHKMQSSEYRRYNITGITPGDDYAAMRQVLTRRYEKMVAQAAANANDEAAELQP 572 Query: 457 -------------------SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 ++P+++LIDGGKGQ+ A+ VF EL + +L+GVA Sbjct: 573 EAAADPAAAPEGAEPVAAGGQLPNIVLIDGGKGQVEIARQVFNELGLDLG----MLVGVA 628 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 KG RK GLETL F L +S AL ++ IRDE+H AI G R KR K + TS Sbjct: 629 KGEGRKVGLETLVFADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSR 688 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 LE +EGVG KRRQ LL GGL+G+ AS++++A V GIS+ LAE+I+ L Sbjct: 689 LEELEGVGAKRRQRLLARFGGLRGVVAASIDDLASVEGISRALAEQIYRQLH 740 >UniRef50_A1WLD5 UvrABC system protein C n=17 Tax=Burkholderiales RepID=UVRC_VEREI Length = 685 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 268/688 (38%), Positives = 382/688 (55%), Gaps = 97/688 (14%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDV 68 A + + + PGVYR +D+ G ++YVGKA+ LK+R++SYF N + +V +I +++ Sbjct: 8 AQVAALPALPGVYRYFDSQGLLLYVGKARHLKRRVASYFTKNHGGTRIGHMVCKIARLET 67 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT------------HPRLA 116 TV +E EALLLE+N IK PR+N+L RDDKSYP++ ++G PR+A Sbjct: 68 TVVRSEAEALLLENNLIKTQNPRFNILFRDDKSYPYLKITGAPASSAGRDAPGQRFPRIA 127 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 +RGA + YFGP+P+ +AV+E++ LLQK+F +R CE++V+ NR+RPCL YQI RC G Sbjct: 128 YYRGAVDKQHRYFGPYPSAWAVKESIELLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSG 187 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PCV L++ E YA V++ + LSG+ ++L + +RM S L FE+AA +R+Q+QA+ Sbjct: 188 PCV-NLIAPEAYAVDVQHAQALLSGQTQELLQAMEARMMAYSGQLAFEQAAEVRNQMQAL 246 Query: 237 RRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE- 294 RV +Q + + D D+D++ V G ACV++ +R G+ LG R YFP L E Sbjct: 247 SRVLHQQSIESAHDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPTHLEDAALFEQ 306 Query: 295 -------------------VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSE 335 V+E FV Q Y+ + P +L+ DK LL Sbjct: 307 ETRDAEEAPATPPRPVEALVLEAFVAQHYMVVA-----PPPVLVTSTPLDKALLEALSGH 361 Query: 336 LAGRK-----------------------------INVQTKPRGDRARYLKLARTNAATAL 366 L + I +PR R +L++A+ NA L Sbjct: 362 LTAAQGGDHAPAAQGGDPPPAASSGGHPLRGTVHITAVHQPREQRRAWLEMAQKNADLQL 421 Query: 367 TSKLSQQSTVHQRLTALASVLKLP----EVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 L+Q+ + R ALA L LP + +ECFDISHT GE T ASCVVF + Sbjct: 422 ARLLAQEGSQQARTRALAEALDLPLADLDPLTIECFDISHTAGEATQASCVVFHHHKMQS 481 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAID--------------------DSKIPDV 462 +EYRRY I GIT GDDYAAM QVL RRYGK + +++PD+ Sbjct: 482 SEYRRYKIDGITGGDDYAAMRQVLTRRYGKLAEAAHEAGGVDCAARPAAPAQGQARLPDL 541 Query: 463 ILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 +LIDGGKGQ+ A+ VF L + + ++GV KG RK GLE L F E SL Sbjct: 542 VLIDGGKGQVGVAREVFTALGLDLTR----IVGVEKGEGRKVGLEELVFADGREKASLGK 597 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKN-TSSLETIEGVGPKRRQMLLKYMGGLQG 581 DS AL ++ IRDE+H AI G R RA+V+ L+ I GVGPK+R LL+ GG++G Sbjct: 598 DSAALMLVAQIRDEAHRFAITGMRAARARVRTGGGQLQEIAGVGPKKRARLLQRFGGVRG 657 Query: 582 LRNASVEEIAKVPGISQGLAEKIFWSLK 609 + +ASVE++ V GIS+ LAE+I+ +L+ Sbjct: 658 VASASVEDLITVDGISRALAEEIYRALR 685 >UniRef50_C7MCN8 Excinuclease ABC subunit C n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCN8_BRAFD Length = 650 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 215/620 (34%), Positives = 335/620 (54%), Gaps = 41/620 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + T+ ++PGVYR D G VIYVGKAK+L++RL +YF+ ++ +T + Sbjct: 1 MADPATYRPATGTIPTRPGVYRFRDEHGRVIYVGKAKNLRQRLVNYFQDLSVLHERTRRM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+ +IK + PR+NV RDDKSYP++ L+ G+ PR+ + Sbjct: 61 VTTAASVEWTVVGTEVEALTLEYTWIKEFDPRFNVKFRDDKSYPYLVLTMGEKVPRVHIT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 R + FGP+P A+RETL L+ ++FPIR C VYR RPCL IG+C Sbjct: 121 RRPRAKGDRTFGPYPQVGAIRETLDLMLRVFPIRSCTAGVYRRAERSGRPCLLGFIGKCA 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +SEEE+ + E F++G + ++ RM+ A+ +++E AA +RD +QA Sbjct: 181 APCV-GDISEEEHRRLAEQFADFMAGNTSKYTRRIEQRMKAAAAAMDYETAAGLRDDLQA 239 Query: 236 VRRVTEK-QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + +V EK V + D D+IG+A D A V V +R G++ G R + ++ + + Sbjct: 240 LEKVMEKNSVVLSDATDADLIGLAQDELEASVQVFHVRGGRIRGQRGWTAEILDDSSGPD 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 ++E + Y +G P E+L+ +++ + + GR ++++ RG++ Sbjct: 300 LIERAMTTLYAEGEA----PREVLVPILPTNREQVLQMM----GRTVDLRVPQRGEKKDL 351 Query: 355 LKLARTNAATALTSKLSQQS----TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 L+ NA AL +++ + L L L+L E R+ECFDISH+ G V Sbjct: 352 LRTVGENATEALRLHRLKRTGDLTARTKALEDLGEALELAEPPLRIECFDISHSHGTNVV 411 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------- 458 S VVF+ P ++EYRRY+++G DD A+M V+ RR +D + Sbjct: 412 GSQVVFEDGLPKKSEYRRYSVSGAAARDDTASMYDVISRRLKHHLDPPEQSEEDRRRFAY 471 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 P +IL+DGG Q+A A+ F +L ++ L G+AK LE ++ + Sbjct: 472 PPSLILVDGGPPQVAAAQRAFDDLGIT----DIALAGIAK------RLEEIWLPGDDYPV 521 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 LP S AL ++Q +RDE+H AI HR KR + S+L+ I G+GP RR+ LL Sbjct: 522 ILPRTSEALFLVQRLRDEAHRFAITYHRSKRGRAMQASALDGIPGLGPARRRALLDRFVT 581 Query: 579 LQGLRNASVEEIAKVPGISQ 598 + +R AS EE+ +V GI Sbjct: 582 VSAIRAASEEELVEVDGIGP 601 >UniRef50_Q1D921 UvrABC system protein C n=2 Tax=Cystobacterineae RepID=UVRC_MYXXD Length = 646 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 215/614 (35%), Positives = 331/614 (53%), Gaps = 23/614 (3%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI-QQID 67 L + ++PGVY M D G VIYVGKA +L+ R+ SYF +R +L+ Q+ ++ Sbjct: 7 EKLDALPTEPGVYLMKDRRGQVIYVGKAINLRSRVRSYFNRTGDTRVFVSLLDQLLGDLE 66 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKG 126 + E EALLLE+ IK ++PR+NVLL+DDK + + L +PRL + R + Sbjct: 67 TVLVSNEKEALLLENELIKKHRPRFNVLLKDDKQFISLRLDRTQPYPRLEVVRKYERDGA 126 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+ + A+RETL ++ + F +R C + V NR RPCL +QIGRC PCV V +E Sbjct: 127 RYFGPYSSAGAIRETLRVVNRFFRLRTCTDHVLANRKRPCLLHQIGRCPAPCVY-PVPQE 185 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +Y + V+ V +FL GK +++ L RM+ A+Q L+FEEAARIRDQ+ A+ R E+Q V+ Sbjct: 186 DYHRSVDEVVMFLEGKAGELVEGLRLRMKRAAQELKFEEAARIRDQLNAIERSLERQKVA 245 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 T D DV + +VL++RQG++ G +++ P E++ +FV +Y Sbjct: 246 TTDFKDQDVFAFHREGDRILFYVLWVRQGRLNGGQAF-PFGSQEFPDEELIASFVNLYYD 304 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 QGS + L L+E G ++ V RG++ +K+A NA A Sbjct: 305 QGSFVPEEVLL--PLELEDGTGGLEALLTERKGERVRVLVPKRGEKLDLVKMAAKNAEQA 362 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAE 424 + + L+ L L L RMECFDISH G VAS V ++ Sbjct: 363 FVERRRTKDETDTVLSRLQQRLGLRNFPCRMECFDISHFQGSAIVASQVAVTDGDADKSR 422 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YR+Y I + DD+A+M +V+ RR K ++D+ +PD+++IDGGKGQLA A ++ V Sbjct: 423 YRKYKIKTLEKQDDFASMYEVISRRLKKGLEDNDLPDLLVIDGGKGQLASAHAAMKDVGV 482 Query: 485 SWDKNHPLLLGVAK---------GADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 ++G+AK A+ E +F + L +S + ++ +RD Sbjct: 483 ----ESVDVVGLAKSRDLEVFDRDAESARSPERIFVVGRKDPIVLSQNSAEMFMLTRMRD 538 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI ++ K + S+LE I GVG RR+ LL++ G L+ + +AS+EE+A+V G Sbjct: 539 EAHRFAITFQKQVLRKSRVRSALEDIPGVGETRRKQLLRHFGSLKRVGDASIEELAEVVG 598 Query: 596 ISQGLAEKIFWSLK 609 +AE++ L Sbjct: 599 --PAMAERVHAGLH 610 >UniRef50_C7N5B1 Excinuclease ABC, C subunit n=6 Tax=Coriobacteriaceae RepID=C7N5B1_SLAHD Length = 666 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 210/639 (32%), Positives = 328/639 (51%), Gaps = 48/639 (7%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D K L +V + PGVY + G VIYVGKAK L+ R+ Y K LV QI Sbjct: 9 DIKHQLASVPTLPGVYLWKNKDGEVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVDQIDS 68 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 + V E EAL+LE N I Y P +N +D+KSYPFI L+ GD P + R A Sbjct: 69 FEYIVVENEHEALVLEKNLINQYAPFFNADFKDNKSYPFIALTKGDVFPAIKYTREKHVA 128 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIR--QC---------------ENSVYRNRSRPCL 167 YFGP+ +G A R+ + +++K+ P+ C + +RPC Sbjct: 129 STRYFGPYTDGRAARQLVDIVRKVVPLCSSSCAEWRRLKKKLDNDDLTAFLSETGTRPCF 188 Query: 168 QYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAA 227 +G G C G ++ E+Y + VE V FLSG+ + + +L M A+ +L+FE AA Sbjct: 189 DAHVGLGPGACC-GQITPEDYRRHVERVEKFLSGRRTEFIEELTQEMMEAAADLDFERAA 247 Query: 228 RIRDQIQAVRRVTEKQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV 286 R++ +I + +T++Q VS+ + DV+G+ + +A VHV IR+G+++ S + Sbjct: 248 RLKSRIDTINSLTDRQHAVSSRNLNADVVGIHREETIAGVHVFMIREGRIINSNEFVLDR 307 Query: 287 PGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS----ELAGRKIN 342 +++ TF+ ++Y ++P E++++ L D + + L+ G K++ Sbjct: 308 GSDVPDEDLLHTFLLRYY---DATTSIPHEVIVERELEDSDAMEEWLTGKLASKFGAKVH 364 Query: 343 VQTKPRGDRARYLKLARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEVK-RMEC 397 + RG++A L++AR NA+ L + V+ L L S L L E R+EC Sbjct: 365 LTVPARGEKAELLEMARKNASHTLNRYKVRTNYEDKRVNAALLQLESALALDEPPMRIEC 424 Query: 398 FDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG-ITPGDDYAAMNQVLRRRY--GKAI 454 FDIS G TVAS VVF P + +YRR+ I + DD+ +M +V+ RRY + Sbjct: 425 FDISTIHGSYTVASMVVFTDGRPDKGQYRRFKIKTPLDEADDFLSMREVIGRRYAPERMA 484 Query: 455 DD--SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFE 512 D K PD++++DGG QL + F E+ + N + G+AK E LF Sbjct: 485 DTRFGKKPDLLILDGGLPQLNAVLDQFEEMGI----NDIPVCGLAKRD------EELFVP 534 Query: 513 PEGE-GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQM 571 + LP S +L++++H+RDESH AI HR+ R K S L+ + G+GP R++ Sbjct: 535 WQQTGPVVLPGGSASLYLVKHVRDESHRFAITFHRELRGKGMTKSILDDVVGLGPVRKKA 594 Query: 572 LLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 LLK MGG + LR AS+EEI + +AE+++ L+ Sbjct: 595 LLKSMGGFKKLRAASLEEIKATKSVPAEVAEEVYAVLRQ 633 >UniRef50_B6AR33 Excinuclease ABC, C subunit (UvrC) n=3 Tax=Leptospirillum RepID=B6AR33_9BACT Length = 632 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 217/610 (35%), Positives = 336/610 (55%), Gaps = 15/610 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQ 65 + L+T+ +PGVY M G V+YVGK++ LK R+ SYF+ S + LV++++ Sbjct: 17 VEDRLRTLPEEPGVYLMKSETGEVLYVGKSRSLKDRVRSYFQETRVRSARIALLVSRVRD 76 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 +++ T TE +AL+LE+ IK Y+PRYNVLLRDDK+YP++ S D PRL + R ++ Sbjct: 77 LEIIRTKTELDALILENTLIKRYRPRYNVLLRDDKTYPYLKFSWNDPFPRLTITRRVRND 136 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLV 183 YFGP+PN A+++TL L+++ FP+ C + + RPC++YQI RCLGPCV GL Sbjct: 137 GNLYFGPYPNPSAMKDTLRLIRRTFPLATCTIPLDQPTLERPCVEYQIKRCLGPCVAGLT 196 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +E EY Q VRLFL GK + +L L + M+ ++NLEFE+AA +RD+ + V +V EK Sbjct: 197 TETEYRQVAMGVRLFLQGKSNDLLFLLENEMKARAKNLEFEKAAAVRDRYRNVLQVLEKH 256 Query: 244 FVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 VS +D + +A A + V+ IR G ++G K E++ F+ Q Sbjct: 257 TVSFPFQHPIDGLYLARSGTTALMLVMHIRNGLLIGKEEVELKNTEEASDEELLVAFLEQ 316 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLA-DSLSELAGR-KINVQTKPRGDRARYLKLART 360 FY G + LPGEILL +L ++ L+ +SE G + + + RGD+ L L R Sbjct: 317 FY--GKESAFLPGEILLPVSLPEEDLMTLSWMSEKKGEDPVRIISPKRGDKKMILDLVRE 374 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMEC-FDISHTMGEQTVASCVVFDANG 419 NA AL ++ ++ + L S+LK R+ C DIS+T VAS V F Sbjct: 375 NAEEALNAREKRKLNSTELLDEARSLLKRDRPPRLLCCVDISNTGDLLPVASLVTFQDGK 434 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 P ++ YR++ I DD+ +++V+ R+Y ++ +PD+++IDGG QL Sbjct: 435 PEKSLYRKFRIRYEKGQDDFKMLSEVMERQYR----ENPLPDLLVIDGGPLQLDACVRTL 490 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 ++ ++ +AK K E +FF + LP P H++ +RDE+H Sbjct: 491 EDMG--HHDASRRVVSLAKERTNKNKSERIFFPGQENPLILPGHHPVTHLLVRLRDEAHR 548 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR R + S L I GVGP R + LL+ G ++ L A++E+I + G+S Sbjct: 549 FAIKYHRTLREEYLTHSRLLNIPGVGPAREKKLLQSFGSVKNLMEATIEDIVQNTGLSVA 608 Query: 600 LAEKIFWSLK 609 L+ I+ SL+ Sbjct: 609 LSTSIYQSLR 618 >UniRef50_D0LVJ3 Excinuclease ABC, C subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVJ3_HALO1 Length = 689 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 232/638 (36%), Positives = 357/638 (55%), Gaps = 45/638 (7%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR---KTEALVAQI 63 +K F + + + PGVY M D G V+YVGKAK+L+ R+ YFR +R L + Sbjct: 10 SKEFFERIPTAPGVYLMKDRSGRVVYVGKAKNLRTRVRQYFRPGADARFFVAAGLLARVL 69 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ID V E EALLLE++ IK +QPR+N+ LRDDK Y + + +PR+ + R + Sbjct: 70 ADIDTVVVDNEKEALLLENHLIKKHQPRFNINLRDDKQYLVLRIDPNADYPRVEVVRNIR 129 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 + YFGP+ + + RETL LL + F +R C + V R R+RPCLQYQI RC GPCV Sbjct: 130 DDQARYFGPYHSATSCRETLRLLNRHFQLRTCTDHVLRTRTRPCLQYQIKRCPGPCVY-P 188 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V + YA+QV+ V +FL+GK+DQ++T+L RM + ++ EFE AAR+RD IQAV + + Sbjct: 189 VERDAYAEQVDDVMMFLAGKNDQLVTRLRERMSSYAEREEFEAAARLRDSIQAVDKTLAR 248 Query: 243 Q-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V D DV G+ + + + VLFIR GK++G RS + +V+ FV Sbjct: 249 QNVVQEQFLDQDVFGMWREGDVVEIAVLFIRNGKLVGRRS-LRQGDQAFPDGQVLANFVQ 307 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y G+ +P EI++ L D+ ++A+ L+ L G+K+ + R RAR L LA N Sbjct: 308 QYYATGT---LVPDEIVVGVELDDEAVIAEWLAGLRGKKVKILHPQRSTRARLLALAEKN 364 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGP 420 AA + S+ ++ L L + L L + R +ECFDI+H G TVAS VVF Sbjct: 365 AAASAASRQNRDRDAEDTLRKLQARLGLKRLPRRIECFDIAHIQGSVTVASMVVFVDGVA 424 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-------------------------- 454 R+ YR++ + +T DD+AAM +VL RR+ +A+ Sbjct: 425 ERSLYRKFKVKSVT-NDDFAAMYEVLSRRFRRALAAQAEAEATAEADGVGEGEGEGADGT 483 Query: 455 ----DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH-PLLLGVAKGADR--KAGLE 507 ++PD++++DGGKGQL QA A+L + ++G+AK + +A + Sbjct: 484 GKTGSSWEMPDLLVVDGGKGQLGQALTALADLGIKITAEKGFDVIGLAKEREISGEALPD 543 Query: 508 TLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPK 567 ++ E L P++ L+++ +RDE+H A HR++R + SSL+ I G+G K Sbjct: 544 RVYLRNRKEAVRLRPNTAELYLLSRVRDEAHRFANTFHRERRNRTALRSSLDDIPGIGAK 603 Query: 568 RRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 RR+ LL+ +G L+ ++ AS+EE++ V G+ + AE ++ Sbjct: 604 RRRALLRELGSLKAIKQASLEELSAVSGMGRKAAEAVY 641 >UniRef50_Q1IZB2 UvrABC system protein C n=4 Tax=Deinococcus RepID=UVRC_DEIGD Length = 616 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 224/614 (36%), Positives = 339/614 (55%), Gaps = 29/614 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + + PGVY GGT IY+GKA +L+ R++ +F++ S K AL +D Sbjct: 6 LPVLPASPGVYIFR-RGGTPIYIGKAVNLRSRVAQHFKAGGKSGKFTAL---ADSLDFIT 61 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T E EAL+LE N IK ++P YNVLL+DDK YPF+ L+ + P L + R Y+G Sbjct: 62 TRNEVEALILEANLIKQHRPHYNVLLKDDKHYPFLKLTNEAFPMLVVTRRVLKDGASYYG 121 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+P+ AVR L+ +FP+R+ + + RPCL Y +GRCLGPCV+ + YAQ Sbjct: 122 PYPDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCVDAA-DPQAYAQ 180 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV--TEKQFVSNT 248 VE V+ L G+ V+ +L + M+ A++ +FE+AAR+RD++QAV ++ TE+ + Sbjct: 181 VVEDVKALLEGRAAPVIARLKADMQAAARAQDFEQAARLRDRVQAVEKLFGTEQHAYVSE 240 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGS-RSYFPKVPGGTELSEVVETFVGQFYLQG 307 DLD +GVA A V + +R G+V+G + + GG ++ EV+ FV +Y Q Sbjct: 241 ETDLDFLGVAQAGEYAMVQLFRLRGGRVVGRDKRFLVGAEGGADVGEVLGAFVQDYYTQA 300 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P ILL D + + LSE AGR++ ++T RGD+A +++A+ NAA L Sbjct: 301 TH---VPPLILLPAEFEDAPVWSAFLSERAGRRVEMRTPKRGDKAELVEMAQRNAAAGLE 357 Query: 368 SKLS--QQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 S+L+ ++ H L AL VL LP R+E +D S+ G V+ VVF+ R+E Sbjct: 358 SELALLERRGDHPGLDALREVLALPDRPWRIEGYDNSNLFGSNIVSGMVVFEGGRARRSE 417 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELD 483 +RR+ + G+ DDYAAM+Q + RR ++ D +PD+ILIDGG+GQ+ A + Sbjct: 418 HRRFKVRGLDHPDDYAAMHQTITRRLTGSLADKLPLPDLILIDGGRGQVHAALDA----- 472 Query: 484 VSWDKNHPLLLGVAKGADR---------KAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 + L+G+AK +R + LET G LP PAL V+ +R Sbjct: 473 LRAADVRVPLVGLAKREERIILPGRFGAQWWLETGTEVGVGGELLLPHTHPALRVLIGVR 532 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE H +A+ HR R + S + + G+G KRR LL++ L+ L A VE IA VP Sbjct: 533 DEVHHYAVSYHRTLRGEQMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAAPVERIAAVP 592 Query: 595 GISQGLAEKIFWSL 608 G++ A+ + L Sbjct: 593 GMNLRAAQSVKKFL 606 >UniRef50_C8WI08 Excinuclease ABC, C subunit n=3 Tax=Coriobacteriaceae RepID=C8WI08_EGGLE Length = 737 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 198/636 (31%), Positives = 323/636 (50%), Gaps = 46/636 (7%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K L +V + PGVY D G VIYVGKAK L+ R+ Y K LV QI Sbjct: 62 IKEELNSVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSF 121 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D V E E+L+LE N I + P +N +DDKSYPFI L+ GD P + R A Sbjct: 122 DYIVVENEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRAD 181 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIR--QCEN-------------SVYRNRSRPCLQYQ 170 +YFGP+ + A R+ + + +++ P+ C + ++ + +RPC Sbjct: 182 TKYFGPYTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAH 241 Query: 171 IGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIR 230 +G G C G ++ E+Y V+ + FLSG+ + + +L + M+ A+ L+FE AARI+ Sbjct: 242 VGLGPGACCGG-ITPEDYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIK 300 Query: 231 DQIQAVRRVTEKQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG 289 +I + +T+KQ VS D DV+G+ + +A VHV +R+G+++ S + Sbjct: 301 ARIDTINSLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKD 360 Query: 290 TELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSEL----AGRKINVQT 345 +++ F+ ++Y ++P E++L DK + L+E G K+ + Sbjct: 361 VPDDDLLHMFLLRYY---DATTSIPHEVILRDEPEDKAAMEAWLTEKLASPYGAKVRITA 417 Query: 346 KPRGDRARYLKLARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEVK-RMECFDI 400 +G++A + +A TNA L + ++ L L S L L E R+ECFDI Sbjct: 418 PQKGEKAELVGMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDI 477 Query: 401 SHTMGEQTVASCVVFDANGPLRAEYRRYNITG-ITPGDDYAAMNQVLRRRY--GKAIDD- 456 S G TVAS VVF P + +YRR+ I + +D+ +M +V+ RRY + D+ Sbjct: 478 STIHGSYTVASMVVFTNGKPDKNQYRRFKIKTPLDEANDFLSMQEVMSRRYAPERMADER 537 Query: 457 -SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG 515 PD+I++DGGK QL+ A +F + + + + G+AK E LF + Sbjct: 538 FGSKPDLIILDGGKPQLSAALEMFERMGI----DDIAMCGLAKRD------EELFVPWQD 587 Query: 516 E-GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLK 574 LP S +L++++ +RDE+H AI HR+ R K S L+ + G+GP R++ LLK Sbjct: 588 TGPVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLK 647 Query: 575 YMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + L++A++EEI + + +AE+++ L+ Sbjct: 648 AFKSFKNLKSATLEEIKEARVVPVEVAEELYRVLQQ 683 >UniRef50_B5YF86 UvrABC system protein C n=2 Tax=Dictyoglomus RepID=UVRC_DICT6 Length = 599 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 221/611 (36%), Positives = 350/611 (57%), Gaps = 28/611 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 D K ++ GVY YD G VIYVGKAK+L+KR+ SYF + S K+ ++ + + Sbjct: 8 MDLKQKVENFPESTGVYIFYDHSGKVIYVGKAKNLRKRVLSYFNDD--SPKSNYILKKAK 65 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKH 123 I+ +T TETEAL+LE IK Y+P NV LRDDK YP + L+ + +PRL + R + Sbjct: 66 NIEFYITDTETEALILESVLIKKYRPIMNVQLRDDKQYPMLKLTLYEEYPRLVLARRFED 125 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGL 182 Y+GP+ VRET+++++KIF +R C ++ +++ RPCL Y IG C PC + Sbjct: 126 DGARYYGPYTQSGTVRETISMVKKIFNLRSCNWNLPKSKPKRPCLNYFIGNCKAPC-QNY 184 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +++EEY + V+ V FL GK ++++ +L +M+ S+NLEFE+AA+IRD+I+ ++ ++EK Sbjct: 185 ITKEEYWEIVKGVIDFLDGKYEEIIEKLYDQMQEYSKNLEFEKAAKIRDKIRLLQNLSEK 244 Query: 243 Q-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q VS ++ D+I + A V IR+GK++ R + +P E++E+FV Sbjct: 245 QKIVSFNRENKDLIQFYVEDHKAKALVYLIREGKLIEKRIFNLTLPEICSNDELIESFVL 304 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTL-LADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y +G +P I++ S++ + L + L + G ++ ++T + + L +A Sbjct: 305 QYYSRG----EIPEVIVVPSPFSEEEVNLKEFLCKRKGSEVVLRTPENEEEEKLLGMALK 360 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 + LT + + V L+ L + L + +E +DIS+ G + V S V F Sbjct: 361 D----LTIESIKSEKVWLALSELQRIFNLQNLPVSIEGYDISNLQGREAVGSRVYFQNGY 416 Query: 420 PLRAEYRRYNIT-GITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 P + +YRRY I +DY + +V+RRR K I++ +PD++LIDGGKGQL+ V Sbjct: 417 PEKTKYRRYKIKYTPELPNDYLMLQEVIRRRL-KNIEEDPLPDIMLIDGGKGQLSAVLEV 475 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 F EL + +L +AK E +F E L DSPALH++Q +RDE+H Sbjct: 476 FNELKI----EPKFILALAKEK------EEIFVPGRSEPILLSYDSPALHLLQQVRDEAH 525 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A+ HRK R+K S L+ I GVG KR ++LL+ L+ L+ AS+E++ KVPGIS+ Sbjct: 526 RFAVSYHRKLRSKKLMDSHLDKIPGVGEKRMKILLEAFSTLENLKKASLEDLKKVPGISE 585 Query: 599 GLAEKIFWSLK 609 +AEKI+ Sbjct: 586 KIAEKIYLYFH 596 >UniRef50_B9M422 UvrABC system protein C n=8 Tax=Desulfuromonadales RepID=UVRC_GEOSF Length = 622 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 217/611 (35%), Positives = 326/611 (53%), Gaps = 21/611 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVT 69 + S PGVY M DA TV+YVGKA+DL+KR+ SYF ++ SR + L+A++ I Sbjct: 7 IGHFPSSPGVYIMKDAEATVLYVGKARDLRKRIRSYFAASGDSRYQIRFLMARVTDIQFI 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 VT TE EAL+LE+ IK Y+P+YN LRDDK+Y + + PRL++ R Y Sbjct: 67 VTDTEKEALILENTLIKKYRPKYNFNLRDDKTYFSLRMDMSSDFPRLSIIRKVTRDGARY 126 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGP+ + R L L K+FP+R R R+RPCL YQ+ +C PC G +S E+Y Sbjct: 127 FGPYSSASDARAVLKHLYKLFPLRHYPMETCRRRNRPCLFYQLKQCSAPC-HGKISREDY 185 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 E LFL GK+ ++L RM A+ ++E+AAR RD I+++ EKQ V Sbjct: 186 MALAEGAALFLEGKNREILKIFRERMSAAAAAEKYEKAARFRDLIRSIEVTVEKQKVVAQ 245 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 G D DVIG + + +LF+R G + GSR+Y + E + +F+ ++Y + Sbjct: 246 GGDSDVIGFYREGEQLHIALLFLRGGTLTGSRNY--SFSWEMDDHEGIASFLNEYY---N 300 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 Q +P EI+L ++D + L EL GR++++ RG++ ++LA NA TA Sbjct: 301 QEVFIPSEIVLPIAIADPLPQEELLCELRGRRVSITVPQRGNKLELVRLAIKNAETAAAE 360 Query: 369 KLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 + + L L L L ++ R +EC+DIS+ G+ V S V F +A YRR Sbjct: 361 RKKAAESGEAILQTLKERLHLHKLPRRIECYDISNIQGQMAVGSKVAFVDGKADKAHYRR 420 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWD 487 Y I G++ DD+A M ++ RR+ PD+I++DGG GQL +V +L ++ Sbjct: 421 YRIKGVSQSDDFAMMREMFSRRFKPGTAPDDYPDLIIVDGGIGQLNVLTHVLGDLQIT-- 478 Query: 488 KNHPLLLGVAK-GADRKAGL-------ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 G+AK DR+ G E +F L +S L ++ IRDE+H Sbjct: 479 --DVEAAGLAKSRVDREMGATEISRSDERVFLPNRKNPVVLRQNSAPLLLLARIRDEAHR 536 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 A+ H+K R S LE I G+G KRR+ LL++ G L+ + A++EE+ +V GIS Sbjct: 537 FAVAYHKKLRGNKLLASQLEAIPGIGIKRRKELLRHFGSLKKISEATLEELRQVQGISAT 596 Query: 600 LAEKIFWSLKH 610 +AE ++ L Sbjct: 597 VAESLWKHLHE 607 >UniRef50_B0VH58 Excinuclease ABC, C subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH58_9BACT Length = 601 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 196/613 (31%), Positives = 332/613 (54%), Gaps = 29/613 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + + L + QPGVY D GT+IY+GKA +LK R+ +Y KTE L+ I Sbjct: 7 EIETKLALLPEQPGVYLWKDKDGTIIYIGKALNLKHRIKNYLNPAGKDLKTEHLIKNIAD 66 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 +D +T++E +A +LE +K Y+P+YN++L+DDK YPF+ ++ + PR+ + R Sbjct: 67 LDYIITNSEADAFILEATLVKRYRPKYNIMLKDDKRYPFVKITVNEPFPRIFITRELLKD 126 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-PCLQYQIGRCLGPCVEGLV 183 +YFGP+ +R TL L+ IFP+R C ++ + + + PC+ +Q+G+C PC+ G + Sbjct: 127 NAKYFGPYTEVRYLRNTLRDLEWIFPLRSCNRNIPKIKYKQPCMNFQLGKCPAPCI-GNI 185 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S++ YA+ V + F +G+ ++L +L + M+ AS L FEEA + RD+I A+ R+ ++Q Sbjct: 186 SQKNYAKTVNQLLRFFNGRYTELLDELRTEMQNASAELRFEEAGKFRDRIIAIERIQKRQ 245 Query: 244 FVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V N G ++D+IG + A +L ++ G ++ +Y E ++ +F+ Sbjct: 246 SVFNVEGGNIDIIGFYREEKRAVCVILKMKNGAIIHQENYPLTNLDYEEPDSILASFLQL 305 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y + +P E+LL F D L L +Q RG++ + + +A+TNA Sbjct: 306 YYADREE---MPEEVLLPFAPKDMDKLNSWLGN------KLQIPQRGEKTKLIAMAKTNA 356 Query: 363 ATALTS----KLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDA 417 + L + + + L LKLP++ R + C DIS G TV+S V F+ Sbjct: 357 FNIVEESKLAHLRKANRTIFPVQELKEALKLPKLPRKIVCMDISTIQGSDTVSSAVFFEN 416 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAK 476 + YR + I I +DYAAM + + R + + ++ PD+I+IDGGKGQL+ ++ Sbjct: 417 GKSKKKYYRHFIIRSIETQNDYAAMQETMARFLTETEKEPQMKPDLIVIDGGKGQLSASE 476 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 + KN ++ +AK A E +F + LP S AL ++ +IRDE Sbjct: 477 QILRASG----KNDISIIALAKRA------EEVFVPGNEQSIILPRSSSALRLLINIRDE 526 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H A+ HRK+R++ S LE+I G+G K + +LLK +G ++ + NA+ E ++K+ GI Sbjct: 527 AHRFALSLHRKRRSRRTLESELESISGIGEKNKFLLLKELGSVENIANANRETLSKIKGI 586 Query: 597 SQGLAEKIFWSLK 609 +AEKI+ Sbjct: 587 GPKIAEKIYNHFH 599 >UniRef50_C6XFB9 Excinuclease ABC subunit C n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFB9_LIBAP Length = 616 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 215/617 (34%), Positives = 339/617 (54%), Gaps = 31/617 (5%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT Sbjct: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFG 130 TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFG Sbjct: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC G +S E+Y + Sbjct: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYME 182 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 V + FLSG + + ++ M A+ ++E A RD++ A+ + + + Sbjct: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--DSIYN 240 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T KL Sbjct: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 Query: 371 SQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 S + + L LP + R+E +D SH MG V VV NG ++ +YR++N Sbjct: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 Query: 430 I--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQL 472 + + DD A M VL RR+ + I + + PDV+++DGGKGQL Sbjct: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + A+ V +L+V +N ++ +AKG R AG+E FF +GE L P L+ IQ Sbjct: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQR 532 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 Query: 593 VPGISQGLAEKIFWSLK 609 + GIS+ +A KI+ Sbjct: 592 IEGISKKIACKIYNHFH 608 >UniRef50_C0GMH4 Excinuclease ABC, C subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMH4_9DELT Length = 641 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 228/619 (36%), Positives = 334/619 (53%), Gaps = 30/619 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEAL 59 M QF++ F PGVY M D +IYVGKAK+L+ R+SSYFRS+ S KT + Sbjct: 37 MQYQFNSSDF----PRDPGVYLMKDEQNRIIYVGKAKNLRSRVSSYFRSSRDPSPKTRVM 92 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMH 118 + ++ Q+D T +E EALLLE + IK ++PRYN++LRDDK Y L +P L + Sbjct: 93 LGRVLQVDYITTTSEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLDKSRPYPALELT 152 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R A+ YFGPF + A RET+ ++ ++F +R+C + +RNR RPCLQ+ I RC GPC Sbjct: 153 RSARRDGSVYFGPFTSAAAARETMKVINRLFYLRKCGHKKFRNRVRPCLQHFIRRCPGPC 212 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 VS EEY++++ + +FLSG+ +++ + M+ AS+ L+FE+AA +RDQI+AV++ Sbjct: 213 CLD-VSTEEYSREIRRLEMFLSGRSAELIKGMEKDMQEASRELDFEKAALLRDQIEAVKQ 271 Query: 239 VTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV---PGGTELSE 294 T+ Q V G D+DV + G + VLF+RQGKVL S+++F EL + Sbjct: 272 TTKSQSVVFPGTGDMDVFAPVYVQGGMGIGVLFVRQGKVLDSKNFFWPEHHPENDQELQD 331 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 + + + QFY S +P +ILL + D LL L E K+ + Sbjct: 332 TLASLLSQFYGPDS---FIPEKILLPEKIHDPALLH-LLMEYRKGKVRLVGARGESLKGL 387 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCV 413 L +AR N + + LA V+ L E +R+EC D+SH G T V Sbjct: 388 LNIARQNCEQHARDRRDAGTPF------LAGVMGLEREPERIECIDVSHHAGRNTRMGVV 441 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 F A P + +YR YN+ ++PGDDY AM + ++RR + S PD++L+DGGKGQL Sbjct: 442 TFVAGEPHKKDYRIYNLPSVSPGDDYQAMREFIKRR---SRSSSPWPDLLLVDGGKGQLG 498 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGL--ETLFFEPEGEGFSLPPDSPALHVIQ 531 + + + L +AK R G + ++ SL P SP L +Q Sbjct: 499 TVQKALQDAG---QEGLFALASIAKAETRARGGAQDQVYLPGRKYPLSLKPASPELLYLQ 555 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H A+G R + S LE I G+GPK+ + L K+ G LQ + AS EE+ Sbjct: 556 RIRDEAHRFALGSMRNSLRRKSLQSDLEKIPGLGPKKVEALWKHFGSLQSILGASREELM 615 Query: 592 KVPGISQGLAEKIFWSLKH 610 +VPG A + SLK Sbjct: 616 QVPGFGPETAGRTARSLKE 634 >UniRef50_B3EU62 Excinuclease ABC, C subunit n=2 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3EU62_AMOA5 Length = 596 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 201/622 (32%), Positives = 330/622 (53%), Gaps = 39/622 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEAL 59 M + + + +QPGVY Y+ +IYVGKAKDLKKR+SSYF N KT + Sbjct: 1 MEAKQYEITEIGKLPNQPGVYFFYNKQQQIIYVGKAKDLKKRVSSYFNKNQQDNLKTRRM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V +I I T+ ++E EALLLE+N IK +QPRYN+LL+DDKS+P+I ++ + P++ R Sbjct: 61 VEEIAAISFTIVNSEYEALLLENNLIKRFQPRYNILLKDDKSFPYICITRERFPKVITTR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRC 174 G+Y+GPF + + + L L++ ++ +R C ++ +++ + CL+Y IG C Sbjct: 121 QPGAKLGQYYGPFTDLKNMYQILDLIKSLYTLRTCNYNLLEENICKHKFKVCLEYHIGHC 180 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 GPC EGL +EE Y Q ++ + FL G + V +M A+ ++++ A +++I Sbjct: 181 KGPC-EGLQTEEAYNQDIQQIEHFLKGNINAVKKHFKEKMSQAAAAMDYKNAQAYKEKIA 239 Query: 235 AVRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 A+ K V N +LDV + DA A + L I++G ++ +++ K Sbjct: 240 ALENYQSKSLVVNPQVGNLDVFAIVSDAKAAFISYLQIKEGAIICTQNTEIKKQLEELDE 299 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 +++ + F + + P EIL++ ++ K + GD+ + Sbjct: 300 DILPLIILHF---REKYASNPSEILVNIPIATTFD-----------KAMLTVPRIGDKKK 345 Query: 354 YLKLARTNA----ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQT 408 ++LA N AL + Q+ ++ L L L+L ++ +ECFD S+ G Sbjct: 346 LVELATKNVLFLKREALLRQEDNQNRANKTLVLLQHDLQLKDLPLHIECFDNSNIQGTHP 405 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDG 467 VA+ VVF P + EYR +NI + DD+A+M +++ RRY + I+++ K+PD+I+IDG Sbjct: 406 VAAMVVFQHGKPAKKEYRHFNIKTVVGPDDFASMREIVTRRYRRLIEENQKLPDLIVIDG 465 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL A EL + ++G+AK LE ++F + + SP+L Sbjct: 466 GKGQLGAAVAALQELGIYG---QIPIIGIAK------RLEEIYFPEDSYPIHISKQSPSL 516 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 ++Q IR+E+H AI HR KR+K S LE+I GVG K LL++ G +Q ++ AS+ Sbjct: 517 KLLQQIRNEAHRFAITFHRDKRSKTSLKSQLESIPGVGEKTITTLLQHFGSVQNIKEASL 576 Query: 588 EEIAKVPGISQGLAEKIFWSLK 609 + +A G A +I LK Sbjct: 577 KALASQVG--NKRAIQIKEHLK 596 >UniRef50_C1F4W9 UvrABC system protein C n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=UVRC_ACIC5 Length = 645 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 220/639 (34%), Positives = 334/639 (52%), Gaps = 49/639 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQI 63 D + ++T+ + PGVY +A G VIYVGKAK+L+ R+ SY ++ A+ KT +L+ + Sbjct: 1 MDLQEKIRTLPTGPGVYLYKNADGEVIYVGKAKNLRSRVRSYLLEASQANAKTGSLMREA 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 +D E EAL LE+N IK +PR+NVLLRDDK+YP++ L+ GD +P++ + R + Sbjct: 61 VDLDYITVGNEHEALALENNLIKQRKPRFNVLLRDDKTYPYVKLTLGDRYPKVFVTRRLR 120 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 Y+GPF G + L+ + F + C+ + R +R CLQY I RCLGPCV+ L Sbjct: 121 KDGAAYYGPFFPGNLAYRIVDLIHRSFLLPSCKVDLSRYHARACLQYYIKRCLGPCVKHL 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + E Y + V + FL G+ + L RM+ A+ +FE AA+ RD + + ++ EK Sbjct: 181 TTPEAYREAVRDAQWFLEGRGADLERSLEVRMQEAAAAEQFELAAKYRDLLVTLHQLQEK 240 Query: 243 QFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK-----VPGGTELSEVV 296 Q V S DD DV G ++ GM V++ +R GK++ R +F + + G + EV+ Sbjct: 241 QRVASADDDDADVFGYHYENGMLAVNLFHMRGGKMVDRREFFWEELPEFMEEGAQEEEVL 300 Query: 297 ----------------------ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS 334 + Q Y++ +P I + N +D+ LA L+ Sbjct: 301 PAQAEGRGEVQVELRFEPGAFFSALLKQIYIEQ---PYVPRSIYVPVNFADREALAGLLA 357 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTA-LASVLKLPEVK 393 E +I + RGD+ + LA NA + + + + L L L E+ Sbjct: 358 EQTHHRIELAVPQRGDKRSLVDLAGQNARQSYEQRFRVMQPNQKAIQEALQDALMLEELP 417 Query: 394 -RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK 452 R+ECFDISH G +TVAS VV++ +A+YR++ I ++ DD+A+M +VL RRY + Sbjct: 418 RRIECFDISHIQGAETVASMVVWENGAMKKADYRKFQIKTVSGVDDFASMREVLTRRYRR 477 Query: 453 AIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFF 511 I++ + +PDVILIDGG GQL A EL + + +AK E ++ Sbjct: 478 VIEEKQAMPDVILIDGGIGQLRAAAAALEELGQTTQ----TVASIAKRE------EIIYL 527 Query: 512 EP-EGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQ 570 E E L SP LH++Q IRDESH AI HRK+R S L I GVG + R Sbjct: 528 YGHEDEPIVLERRSPVLHLVQRIRDESHRFAIAYHRKRREMRDRDSELLEIPGVGTRTRT 587 Query: 571 MLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 LL++ G L+G+R A VE + V + + AE I + Sbjct: 588 RLLEHFGSLRGVRKADVEALTAV--VPRPTAEAIAAHFQ 624 >UniRef50_D0RRP8 Excinuclease ABC subunit C n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRP8_9RICK Length = 612 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 207/609 (33%), Positives = 336/609 (55%), Gaps = 21/609 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K K ++ PGVY+++D +IYVGKAK+L RLS+Y S+ +TE ++A +ID Sbjct: 12 KNKSKLCSNSPGVYQVFDEKNKIIYVGKAKNLPNRLSNYSSSSTQPIRTERMIASTNRID 71 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKG 126 T E+EALLLE N IK +PRYNVLL+DDKS+P+I + S +P++ RG + K Sbjct: 72 TISTLNESEALLLEANLIKKNKPRYNVLLKDDKSFPYIQIRSSHDYPQITKFRGKHNDKD 131 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGPF + + T+ +LQK+F IR C+++ ++ RSRPC+ YQI RC GPC G +++ Sbjct: 132 IYFGPFASIASANWTIKMLQKVFQIRVCDDNTFKGRSRPCILYQIKRCSGPCT-GEITKS 190 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 EY++ V+ FL+GK + ++ ME S L FE+AA +RD+I+++ + Q + Sbjct: 191 EYSKTVDECSSFLNGKSRDIQKKMSQEMEKESDRLNFEKAAILRDRIKSLTYIQSSQNIQ 250 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D D+I + CV + F R + GS+ ++PK ++++F+ QFY Sbjct: 251 KNNLKDADLIVSHRKENITCVVIFFYRSKQNWGSQYFYPKHDHEDSDEHILKSFLTQFY- 309 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + + P E++L+ + L+ + + +KI ++ P + +K A NA Sbjct: 310 ---ENKEPPSELVLNLTPENHELIKSAFEKKYNKKILIKISP---KNSMVKNAVKNAQEQ 363 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAE 424 L K+ Q + L ++ KL +E +D SH G+ + + + F +G ++ Sbjct: 364 LQIKILSQEKNNDLLISMGEKFKLGFTPSLIEVYDNSHNQGDSNIGALIAFGKDGFIKNR 423 Query: 425 YRRYNITG--ITPGDDYAAMNQVLRRRYGK--AIDDSKIPDVILIDGGKGQLAQAKNVFA 480 YR++NI I DDY M +V++RR+ K ++ D +PD++LIDGGKGQ + +N Sbjct: 424 YRKFNIKNTKIKSNDDYGMMTEVIQRRFSKVDSLTDENVPDLLLIDGGKGQYSVVRNKLN 483 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 +L K ++ ++KG +R G E F E L + P L + Q IRDE+H Sbjct: 484 DLGFHGLK----IIAISKGKERNKGNEK--FISEDGVIELDKNDPVLFLTQRIRDEAHRF 537 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HRKK+ K S L+ I+G+G KR++ LL + G + + AS+++I + GI+ Sbjct: 538 AITTHRKKKTKQMFKSPLDEIDGIGSKRKKALLSHFGSAKAIEGASLDDIKSIDGINDSS 597 Query: 601 AEKIFWSLK 609 AEK++ Sbjct: 598 AEKVYNFFH 606 >UniRef50_B5YHU3 Excinuclease ABC, C subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHU3_THEYD Length = 589 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 217/602 (36%), Positives = 321/602 (53%), Gaps = 24/602 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L TV S PGVY D+ G V+YVGKAK+L+ RL SYF+S+ + +V I+ V Sbjct: 4 LNTVPSLPGVYLFKDSKGKVLYVGKAKNLRNRLKSYFQSDDLDPRKSKMVKLIKDFSYIV 63 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T E EAL+LE N IK ++P +NVLLRDDKSYP++ ++ + P++ + R K YF Sbjct: 64 TSNEFEALVLEANLIKQHKPSFNVLLRDDKSYPYLRITVVEEWPKIDVVRKPKKDGNLYF 123 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+ ++ E L+ +++ FPIR C+ + RPC+QYQ+ RC PC G +S E+Y Sbjct: 124 GPYVPAQSMWEALSFIRRNFPIRTCKYRL-NKPIRPCVQYQMKRCPAPCA-GFISREDYM 181 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNT 248 + V V LFL G+ ++L L +M+ S L+FE AA+IRDQI+ + ++ +Q VS T Sbjct: 182 KGVNEVVLFLKGQKTELLNILYEKMQKLSHELKFEAAAKIRDQIRRLEKIFTQQRVVSQT 241 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 DD+DVIGV + V+ LF+R G ++GS + K E++ + Y S Sbjct: 242 LDDMDVIGVYIENSKISVNTLFVRNGLLVGSNDWTVKKAFYESEGELIHAVIEALY---S 298 Query: 309 QMRTLPGEILLDFNLSDK-TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P I++ NL + T + + L E G + ++T + L +A NA L Sbjct: 299 KEALIPPPIIVLENLPESLTEIKEWLKEKRGDFVELKTPSLEEEKALLDMALNNAKIHLQ 358 Query: 368 SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 SK+S + L L L L E+ ++ FD+S G +V S V + + YR Sbjct: 359 SKIS---PLETSLKELKQRLNLSEIPSKIGAFDVSTLFGSYSVGSFVYWQDGFFDKNLYR 415 Query: 427 RYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 I I DDY+AM +++ R K + PD+ILIDGG G L A V EL Sbjct: 416 HLRIKEIQGIDDYSAMKEIVHRVVKKFNAELPEPDLILIDGGLGHLNAAIKVINEL---- 471 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 K + +AK DR L F +G L P+ +++ IR+E+H AI H+ Sbjct: 472 -KEKLNVFAIAKDPDR------LIFP-DGRELVLEDKKPSSLLLKKIRNEAHRFAISYHK 523 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 K R K S LE I+G+G KRR LLK+ G + ++ A+VEEIA + G + LA K+ Sbjct: 524 KLRKKATFESLLEKIQGIGKKRRLTLLKHFGSISKIKAATVEEIASLQGFNLRLAGKVIE 583 Query: 607 SL 608 L Sbjct: 584 EL 585 >UniRef50_A5FM03 UvrABC system protein C n=25 Tax=Bacteroidetes RepID=UVRC_FLAJ1 Length = 597 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 210/611 (34%), Positives = 325/611 (53%), Gaps = 41/611 (6%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 T+ PGVY+ YD G ++YVGKAK+LKKR+SSYF + KT LV +I I V Sbjct: 12 TLPDNPGVYQYYDKDGKILYVGKAKNLKKRVSSYFNKIHDTAKTNVLVKKIVTIKHIVVP 71 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPF 132 TET+ALLLE+N IK QPRYNVLLRDDKSYP+I + + R+ + R EYFGP+ Sbjct: 72 TETDALLLENNLIKTLQPRYNVLLRDDKSYPWICIKKEPFSRIFLTRRMVKDGSEYFGPY 131 Query: 133 PNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 N V L L+++++P+R C +++ + + CL+Y IG C GPC EGL EE Sbjct: 132 TNFKMVYTILDLIKELYPLRTCNYDLSQSNIDSGKFKVCLEYHIGNCKGPC-EGLEPLEE 190 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y +QV +R L G + L M +QNL+FEEA +I+++I+ + + + N Sbjct: 191 YQRQVNAIREILKGNFKESLKDFKKLMNNYAQNLQFEEAQKIKEKIEVLENYQSRSTIVN 250 Query: 248 TG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 ++DV + D A V+ L I G ++ S + K E++E + + Sbjct: 251 PKITNIDVFSIISDESAAYVNFLQISHGSIIRSHTLEMKKKLDESDEELLELAIIEL--- 307 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + + + EI++ F + G I GD+ + L L+ NA Sbjct: 308 RERFQLMSKEIIVPFEID------------LGENIKTTVPQLGDKKQILDLSIRNAKFYR 355 Query: 367 TSKLSQQST------VHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANG 419 +L Q V++ + + L+LP E + +ECFD S+ G VA+CVVF Sbjct: 356 IEQLKQLQIVDPDRHVNRIMAQMQKDLRLPVEPRHIECFDNSNIQGTNPVAACVVFKDGK 415 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 P + +YR +N+ + DD+A+M +++ RRY + +D++ +P +I+IDGGKGQL+ A Sbjct: 416 PSKKDYRHFNVKTVEGPDDFASMTEIVYRRYKRLLDENQPLPQLIIIDGGKGQLSSALKS 475 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 EL + + ++G+AK LE LF+ + L S L VIQ +R+E+H Sbjct: 476 IDELGL---RGKVAIIGIAK------RLEELFYPGDSIPLYLDKKSETLKVIQQLRNEAH 526 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 I HR KR+K SS+E+I G+G K L+++ ++ L+ A+ +EI+ V G+S+ Sbjct: 527 RFGITFHRDKRSKAALNSSVESIPGIGEKTMLTLIQHFKSVKRLKLATEKEISAVVGVSK 586 Query: 599 GLAEKIFWSLK 609 A+KI K Sbjct: 587 --AKKIVDFYK 595 >UniRef50_B0SB16 UvrABC system protein C n=6 Tax=Leptospira RepID=UVRC_LEPBA Length = 614 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 199/621 (32%), Positives = 332/621 (53%), Gaps = 25/621 (4%) Query: 1 MSDQF---DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 M D + +K + S PG Y + G VIYVGKA L+ R+ SY N RKT Sbjct: 1 MKDSLVLKTIQEKIKNLGSLPGCYLWKNELGQVIYVGKALKLQSRVRSYLNPNQKDRKTR 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLA 116 AL ++ +D T TE EALLLE IK Y P++NV L+DDK YPF+ + + + +P + Sbjct: 61 ALFVELYDLDWIATGTEKEALLLEATLIKKYNPKFNVRLKDDKKYPFLCVSTSEDYPMVF 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY-RNRSRPCLQYQIGRCL 175 + R K YFGPF + A R+TL L+ +IFPIR+ + + RPCL + +GRCL Sbjct: 121 LTRKVKDNGDRYFGPFTDVKAARDTLELIHRIFPIRKTKLKLPLPKPQRPCLNFHMGRCL 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC +G V+++ Y++ V+ + FL GK ++++ L M AS +E+E A ++ +I+ Sbjct: 181 GPC-QGNVTKDTYSELVDEILRFLEGKKERLVADLKKAMMDASSKMEYERAGFLKQRIEK 239 Query: 236 VRRVTEKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + ++ EKQ V + G D D++G++ + +L +R G++ G +S+ ++ E Sbjct: 240 INQLREKQTVVSMDGGDEDILGISKREDEGQILILEVRGGRLEGKKSFPLTGLSFSDDEE 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFN-LSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 +F+ +YL + LP + L + + + +++ E G I ++ G + Sbjct: 300 AFTSFLRDYYL---NVTVLPSVVYLPTSAKGNYDVFLEAILEKFGTSIKLKFPEMGPKKS 356 Query: 354 YLKLARTNAATALTSKL--SQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVA 410 L+LA NA +LT ++ ++ + L L LP + R +EC+DISH G VA Sbjct: 357 LLRLAEKNADLSLTERILATKLRDQTVAMKELQEKLNLPTLPRTIECYDISHFQGSLPVA 416 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGK 469 S V+F P + YR Y + G +D +++V+ RR + ++ +PD+I+IDGG Sbjct: 417 SGVMFVEGKPYKPGYRHYKMRGYEGINDPGMIHEVIARRLSHLVNEEEPLPDLIVIDGGL 476 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 QL++A LD+ H ++G+AK E ++F E +S SP + + Sbjct: 477 TQLSRAAEAANALDL----GHIPMVGLAKKR------EEIYFPGEKHPYSFDQHSPMMRL 526 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 ++++RDE+H + R +R K S L+ I +G RR+ +L Y + + +A+ +E Sbjct: 527 LRNLRDEAHRFGVTFQRLQRKKKALKSILDDIPDIGASRRKSILMYFQAKKKVTDATRQE 586 Query: 590 IAKVPGISQGLAEKIFWSLKH 610 + KV GI LAEKIF ++++ Sbjct: 587 LEKVQGIGPVLAEKIFTNIQN 607 >UniRef50_O26541 UvrABC system protein C n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=UVRC_METTH Length = 579 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 223/599 (37%), Positives = 327/599 (54%), Gaps = 35/599 (5%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + + GVY D V+YVGK+ ++KR+SSYFR + + ++ ++ I+ +T Sbjct: 8 EKLPDATGVYIFRDRDDRVLYVGKSISIRKRVSSYFR-EQENPRLRIMMRHLESIEYILT 66 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGP 131 E EAL+LE N IK Y+P YNV L+DDK YPFI ++ + +PR+ + R Y+GP Sbjct: 67 QNEKEALILESNLIKRYRPPYNVRLKDDKRYPFIKITDEEYPRVLIVRTIGRDSARYYGP 126 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 F + AVR TL L++ +F IR C R PCL QI C PC +G +S E+Y + Sbjct: 127 FTDTGAVRRTLKLIKSLFRIRSC-----RRMDGPCLNSQIDLCYAPC-DGRISREDYREI 180 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD- 250 +E V LF G+ +V+ L M+ AS+ LEFE AARIRDQI+++R V E+Q S T Sbjct: 181 IEKVDLFFQGRYQEVIEVLEEEMKEASERLEFERAARIRDQIESIREVMERQHASFTDSI 240 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 D D++ + + V VL IR GK+ G + + G +E++E F+ Q+Y + Sbjct: 241 DQDIVALERGGDTSAVVVLQIRDGKITGKDDFILR--GSAPRTEILEAFLKQYY---AIP 295 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 R +P EIL + + D ++A+ LSEL G ++ + + G R L +A NA+ L Sbjct: 296 RRVPSEILTQYPVED-GVIAEWLSELRGEEVKIHSPEGGAGRRLLNIAWKNASVIL---- 350 Query: 371 SQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 Q+ V L L LKLPE+ RME DIS+ GE S VF P YRRY Sbjct: 351 KQKGRVRDALLQLKDDLKLPEIPRRMEGLDISNIAGESATGSVAVFIDGKPSSGSYRRYR 410 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 I DDYA M +++ RRY + + PD++LIDGGKGQL A V Sbjct: 411 I-SAQGPDDYAMMRELVERRYSS--PELRKPDLVLIDGGKGQLGVALEALKNCGV----- 462 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 H ++G+AK E ++ E D AL +++H+RDE+H A+ HR R Sbjct: 463 HVPVVGIAKKR------EEVYLPGLSEPV--DVDDGALQILRHLRDEAHRFAVKYHRTIR 514 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + S L+ I GVGP R++ LL++ G L G+R+ASVEE+A +PG+++ +AE+I Sbjct: 515 DRDSLESELDGIRGVGPVRKRALLEHFGSLDGVRDASVEELASIPGMTREVAERIHRHF 573 >UniRef50_C8X3R4 Excinuclease ABC, C subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R4_DESRD Length = 636 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 233/622 (37%), Positives = 325/622 (52%), Gaps = 36/622 (5%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDVTV 70 K PG Y M D G VIYVGKAK L+KRL+SYF+ + RKT ++ ++ I+ Sbjct: 7 KEYPDCPGTYLMKDERGRVIYVGKAKVLRKRLASYFQEPDRLPRKTRVMMDKVWSIETLC 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYF 129 T TE EA LLE++ IK ++PRYN++LRDDKSY L PRL+M R YF Sbjct: 67 TETEKEAFLLENSLIKKHRPRYNIILRDDKSYVLFKLDKRHPFPRLSMTRRVVQDGSTYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + A RET LL ++FP+R+C+ + + NR RPCLQY IGRCLGPCV + +EY Sbjct: 127 GPFTSAVAARETWKLLNRLFPLRKCKQTTFNNRVRPCLQYNIGRCLGPCVYD-IPRQEYQ 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF-VSNT 248 + V V LFL+G+ ++L +L + M+ AS++L FE+AAR+RDQIQAV + E+Q V Sbjct: 186 EVVRQVELFLTGRSKELLRRLRADMQAASEDLRFEDAARLRDQIQAVEQTVEQQVAVLPG 245 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG------------------T 290 G D DV+G+ G + +LF+RQG++L +S+F G Sbjct: 246 GKDRDVLGLGRTVGGVALGLLFVRQGQLLDQKSFFWAEEDGTDELGLQEETASAQSTAVE 305 Query: 291 ELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD 350 E EV+ +FV QFY G R +P I+L F + D +L D LSE G + + T Sbjct: 306 EAQEVLRSFVLQFYSPG---RYIPERIVLPFAMEDA-VLEDILSERRGGPVRLATAHGPQ 361 Query: 351 RARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 + + LA TNA A + TV L L L L ++ R+E D SH G+ V Sbjct: 362 ERKLVSLAETNAVQAGDRA---RKTVEPPLERLQDRLGLSQLPERIEAVDASHFGGQGMV 418 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPG-DDYAAMNQVLRRRYGKAIDDSKIPDVILIDGG 468 VVF+ P + YR Y + DDYAA+ RRR PD+I++DGG Sbjct: 419 VGQVVFENGRPHKEAYRIYAFPELEGAADDYAALQGWARRRLRSG---PPWPDLIVVDGG 475 Query: 469 KGQLAQAKNVFAE-LDVSWDKNHPLLLGVAKGADRKAGLET-LFFEPEGEGFSLPPDSPA 526 KGQL + E + + L +AKG R LE +F +L P S Sbjct: 476 KGQLQAVQKGLNEGQEAGLAADSFALAALAKGERRGGELEERVFRPGRKNPVALRPGSAE 535 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L ++QHIRD H + R+ R S LE + GVGP+ +L + G L+ + A+ Sbjct: 536 LLLLQHIRDSVHRFVLSRQRRTRRAKGLDSRLEELPGVGPRTAHLLWNHFGTLERMCQAT 595 Query: 587 VEEIAKVPGISQGLAEKIFWSL 608 E+ +PGI A ++ L Sbjct: 596 EAELEALPGIGAAKAAQLRRGL 617 >UniRef50_C4FUE0 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUE0_9FIRM Length = 604 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 207/612 (33%), Positives = 330/612 (53%), Gaps = 32/612 (5%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 Q +A LK + PG Y M DA ++YVGKAK+LK R+ SYFR KT LV++I Sbjct: 16 QERIEAKLKLLPDLPGCYLMKDAADQILYVGKAKNLKNRVRSYFRGA-HDTKTTKLVSEI 74 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 ++ +T++ EALLLE N I+ Y+P +N+ L++ YP++ ++ + HP+L + Sbjct: 75 DHFEIIITNSNKEALLLEINLIQQYKPPFNIRLKEGTMYPYLKITKERHPQLIITSNVTK 134 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 G YFGPFPN A +T LL +++P+R+C +N R C Y +G+C+GPC + V Sbjct: 135 DGGLYFGPFPNVGAATQTQQLLHRVYPLRRC----GKNEKRACFYYHLGQCIGPC-DHEV 189 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +++ Y QQ++ ++ F +G ++TQL +M+ A++ L+FE+AA RDQ+Q + E+Q Sbjct: 190 TKDMYEQQIQKIKQFFNGDIQPIMTQLKDKMQAAAERLDFEQAADYRDQLQYIETTIERQ 249 Query: 244 FV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 + S D+ DV F G + V +RQG +L + P T+ E + TF+ + Sbjct: 250 IIMSQDYDNTDVFAYDFQRGWISIQVFMLRQGSILKREAAI--YPAYTDPDEELTTFIAR 307 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 FY + + + LP IL+ ++ DK LL+ +S I + T RG + L L N+ Sbjct: 308 FYQEENHL--LPKAILVPEDV-DKDLLSQVIS------IPISTPQRGKKKSMLDLCAKNS 358 Query: 363 ATALTSKLSQQSTVHQRL----TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 AL +L+ Q+ LA+ L +P +E FD S+ G V+ VV+ Sbjct: 359 QLALNERLNLLDIQAQQTRGVSEDLAAALGIPLAYHIEAFDHSNISGTGLVSGMVVYKEG 418 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKN 477 P R YR++ I +++A +V+RRRY + + ++ +P++IL+DGGK Q+ A+ Sbjct: 419 KPDRKSYRKFKIKESNQTNEFAHTQEVIRRRYSRLLREEQPLPNLILMDGGKVQVRAARQ 478 Query: 478 VFA-ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 V EL +S + G+ K + L E L SP H IQ I++E Sbjct: 479 VIEKELGLS-----IPVAGMVKDDKHRTAS--LMNGYSEELVELDRQSPVFHYIQRIQEE 531 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 H +AI HR+ R+K + S L+ I GVG R LLK+ L+ ++ AS+E+ AK+ G+ Sbjct: 532 VHRYAISYHRQVRSKQQFASKLDAIPGVGKVTRTKLLKHFKSLKAMKEASIEDYAKL-GV 590 Query: 597 SQGLAEKIFWSL 608 LAE+I L Sbjct: 591 RAELAERIIAYL 602 >UniRef50_Q2S280 UvrABC system protein C n=1 Tax=Salinibacter ruber DSM 13855 RepID=UVRC_SALRD Length = 633 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 207/632 (32%), Positives = 336/632 (53%), Gaps = 43/632 (6%) Query: 1 MSDQFDAKA-----FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASR 54 MS+ D K L + + PGVY+ D +V+YVGKAK+L+ R+ +YF+ + Sbjct: 1 MSEVLDDKPEVLVQKLDALPTDPGVYKFLDDEESVLYVGKAKNLRNRVRTYFQQSRQRDG 60 Query: 55 KTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPR 114 + E +V + +D+ VT TE EAL+LE+N IK QPRYNV LRDDK+YP+I + + PR Sbjct: 61 RIEVMVQKAVDVDIIVTDTEAEALILENNQIKELQPRYNVNLRDDKTYPYICIKNERFPR 120 Query: 115 LAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-----PCLQY 169 + R K EYFGP+ + + + ++ +F +R C + + CLQ+ Sbjct: 121 VFKTRTVKQDGSEYFGPYADVSKMNSMMDAIRSVFQLRTCSLDLTEEKIEAGKYDVCLQH 180 Query: 170 QIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARI 229 I C PCV G SE +Y + +E V+ L+G+ +++ L M+ S FEEAAR+ Sbjct: 181 HIDNCKAPCV-GKQSEADYMETIEQVKKLLNGQTQELMDLLKDEMQRQSDAHNFEEAARL 239 Query: 230 RDQIQAVRRVTEKQFVSNTG-DDLDVIGVA--FDAGMACVHVLFIRQGKVLGSRSYFPKV 286 RDQ++A++ +++Q V + D DV + D + C + +R+GK++G R F + Sbjct: 240 RDQVKALKDYSQQQKVVSQDFADRDVFALHVERDEDIGCGVLFQVREGKMIGKRHKFLRS 299 Query: 287 PGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTL-----LADSLSELAGRKI 341 +E++ + V +Y + P E+LL + +D L + L + G ++ Sbjct: 300 VEERSDAELILSLVENYYAEA---NFYPEEVLLSHDPNDHPAQDTHALEELLRQEQGHQV 356 Query: 342 NVQTKPRGDRARYLKLARTNAATALTSKLSQQ-----STVHQRLTALASVLKLPEVKR-M 395 ++ RG++A +++A +NA + +QQ + + + + AL L + R + Sbjct: 357 PIKVPQRGEKASLVRMATSNAKLQVGEWKTQQMKRERNRIPESIKALGEALNMEAPPRRV 416 Query: 396 ECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG--DDYAAMNQVLRRRYGKA 453 + D+SH G++TVASCVVF P +++YR Y I G DDY AM +V+RRRY + Sbjct: 417 DGIDVSHHGGKETVASCVVFTDATPRKSDYRTYKIRSTEEGTPDDYKAMREVVRRRYRRM 476 Query: 454 ID-DSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFE 512 ++ D PD+++IDGGKGQL+ A + E+ + ++G+AK LE ++ Sbjct: 477 VEEDGPWPDLVVIDGGKGQLSSAVEMLKEVGA---FDRFPVIGLAK------RLEEVYRP 527 Query: 513 PEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQML 572 + + L DSPAL ++Q +RDE+H A+ RK+R K S L I G+GPK + L Sbjct: 528 GDSDPVFLAKDSPALQLLQKVRDEAHRFAVTYQRKRRKKKTLQSELLDIHGIGPKTAKKL 587 Query: 573 LKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 L G ++ A E +A+V G AE I Sbjct: 588 LGEFGSAAKVKEADEEALAEVVG--PAKAETI 617 >UniRef50_Q6SI31 Excinuclease ABC, C subunit n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI31_9BACT Length = 622 Score = 602 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 213/630 (33%), Positives = 339/630 (53%), Gaps = 43/630 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D K + T+ QPGVY ++ G IYVGKA L+ R+ SY ++ AS + +AL+ ++ Sbjct: 5 DLKVQISTLPEQPGVYLYFNGAGDTIYVGKASVLRDRVRSYLSAHGASPRIDALLDDVES 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 +++ VT + EAL LE+N IK P+YNVLLRDDK+YP++ L+ + PR+ + R + Sbjct: 65 LEIIVTDSVAEALALENNLIKHRAPKYNVLLRDDKNYPYLQLTTNEAFPRVLVSRRVQRD 124 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 Y GPF R+T+ L ++F IR C + R RPCL+Y I RCL PCV + S Sbjct: 125 GAFYAGPFLPTALARKTMLLTHRLFGIRSCNEVITGRRDRPCLEYDIKRCLAPCVANVCS 184 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ- 243 +E YA+ VE+ R+FL G++ ++L L SRM A++N FE+AA RD I+ ++ + +Q Sbjct: 185 QERYAEAVEHTRMFLEGRNHELLNTLTSRMTQAAKNEHFEQAAEWRDAIRTIKALRHRQQ 244 Query: 244 -FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE--VVETFV 300 T D D G+ +H+ +R+G+V+ V + E +V+ V Sbjct: 245 KMSLPTLGDRDAFGMRLGPAGVVIHIFQMRRGRVIDRIELVADVEELRDNREEYIVQVAV 304 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 QFY + R P E+LL + D + + LSE A +K+++ RG++ L+LA Sbjct: 305 QQFY----EARPAPPEVLLPTIIDDLEAVEEWLSERAKKKVHLSVPKRGNKRALLELASR 360 Query: 361 NAATALTSKLSQQ-STVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDAN 418 NA ++ S++ + H + L L L + R+ECFDIS G TV + VV + Sbjct: 361 NATIGYKARYSEEVVSHHAAMEILRVELDLATSLHRIECFDISTIQGSDTVGAMVVCENG 420 Query: 419 GPLRAEYRRYNITGITPG-------------------DDYAAMNQVLRRRYGKAIDD-SK 458 +R+ YR++ I G+ G DD++AM++++ RRY + +++ Sbjct: 421 RMMRSAYRKFKIRGLVKGQQSIHRSSSSGLGSVVGKPDDFSAMHEIVFRRYRRLLEEGGP 480 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 PD+I+IDGGKGQL+ + EL +S + + +G+ K E L + Sbjct: 481 FPDLIVIDGGKGQLSASYAALEELGLS----NLIAVGLVKKK------EVLVVRDRPDPI 530 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 +LP + AL ++Q IRDE+H A+ HR+ R S+L++I GVG +RR++LL G Sbjct: 531 TLPSANEALLLLQRIRDEAHRCAVTFHRRTRTARHLRSALDSIPGVGLQRRRILLTRFGS 590 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + G+R AS EE+ V G +A+ + Sbjct: 591 VAGVRRASREELMTVVG--ARVADAVLSYF 618 >UniRef50_Q1MQH2 UvrABC system protein C n=3 Tax=Desulfovibrionaceae RepID=UVRC_LAWIP Length = 621 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 210/629 (33%), Positives = 334/629 (53%), Gaps = 42/629 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQI 66 + ++ + PGVY D+ G +IYVGKA++L+KR+ SYFR L + KT+A++ + Sbjct: 3 RPHPSSIPTTPGVYLYKDSQGRIIYVGKARNLRKRVLSYFRDGLVITPKTKAMMNHANLL 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 + T+TE EALLLE + IK ++PRYN++LRDDK Y + PRL + R + Sbjct: 63 ETISTNTEKEALLLEASLIKKHRPRYNIVLRDDKQYLLFRIQKGIPFPRLEIVRQSYKDN 122 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGPF +G +VR+T + KIFP+R+C + V+ NR RPCL + + +CL PC E V Sbjct: 123 AVYFGPFTSGTSVRDTWKFIHKIFPLRRCSDKVFNNRIRPCLYFYLQQCLAPCTE-EVDP 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-F 244 ++YA ++ V LFLSGK +++ L M AS+ LEFE+AA +RDQIQA++ E+Q Sbjct: 182 KDYAVLIQKVELFLSGKSKELVELLQKDMLYASEALEFEKAATLRDQIQAIKHTIERQSV 241 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 V G D+DVIG+A + LF+R+GK+L R++F + E++ +F+ QFY Sbjct: 242 VLPEGGDMDVIGIAVVNNGLALGFLFVREGKLLDGRTFFWPGLELDDGPELLGSFLSQFY 301 Query: 305 LQGSQMRTLPGEILLDFNLSDK-----------TLLADSLSELAGRKINVQTKPRGDRAR 353 S + ++P I++ + L L ++ + ++ + Sbjct: 302 ---SPISSIPPRIIVPWLPESTNNKDEISEDTFETLKYVLEDIRNSTVRIEVPKNIIESN 358 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASC 412 + +A TNA A+ +KL + LA V + + R+EC D+SH G T Sbjct: 359 LVDIAVTNAREAVQTKLGE-----PMSAKLAKVFHTDKPIFRIECVDVSHISGTNTRVGM 413 Query: 413 VVFDANGPLRAEYRRYNITG----ITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGG 468 VVF+ + PL+ +YR Y+ T GDDYAA+ +RR D++LIDGG Sbjct: 414 VVFEDSQPLKNDYRIYSTTEDNSPFIKGDDYAALASWAKRRIQSG---PPWADLVLIDGG 470 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAK------GADRKAGL--ETLFFEPEGEGFSL 520 KGQ+ + VF E + K+ +L G+AK DR+AG + +F +L Sbjct: 471 KGQINAVQRVFNEHHL---KDVFILAGIAKARNEEGRVDRRAGNIGDKIFVVGRMNPLTL 527 Query: 521 PPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 SP L +Q++RD +H+ +G HRK R L I G+G ++L + ++ Sbjct: 528 KEGSPELLFLQYVRDTAHNFVLGKHRKARKNTALLGELLRIPGIGQATAKLLWSHFKTVE 587 Query: 581 GLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + A+++++ +PGI + A + L+ Sbjct: 588 AMTCATIKDLEAIPGIGEAKARMLAERLQ 616 >UniRef50_A0M672 UvrABC system protein C n=7 Tax=Bacteroidetes RepID=UVRC_GRAFK Length = 597 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 192/612 (31%), Positives = 326/612 (53%), Gaps = 39/612 (6%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 ++ + LKT+ + PGVY+ +D G ++YVGKAK+LKKR++SYF N S + +V + Sbjct: 2 EKPALEVQLKTLPNSPGVYQYFDKNGKILYVGKAKNLKKRVTSYFNKNHDSHRIGVMVKK 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 I +I V +ET+ALLLE+N IK +QPR+NV+L+DDK+YP+I + + PR+ R Sbjct: 62 ICEIKHIVVASETDALLLENNLIKKHQPRFNVMLKDDKTYPWICIKNERFPRVFPTRRLI 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGP 177 EY+GPF + V L L++ ++ +R C + + + + CL+Y +G CLGP Sbjct: 122 KDGSEYYGPFTSFKTVNTLLDLIKGLYKLRTCNYDLAEDKIRNGKYKVCLEYHLGNCLGP 181 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C EG EEEY +E +R + G L + ++M+ S+ +EFE+A RI+++I + Sbjct: 182 C-EGFQPEEEYNNNIEAIRQIVKGNFKDSLQRFRNQMKQHSEKMEFEDAQRIKNKIDVLE 240 Query: 238 RVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 K V N +++DV V D G V+ L + G ++ S + K E++ Sbjct: 241 NYQAKSTVVNPRINNVDVFSVVSDEGYGYVNFLQLSHGAIIRSHTIEMKKKLDESDRELL 300 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 E + + + S T EI + F + G ++ + GD+ + ++ Sbjct: 301 ELAIVEIRQRFSSNST---EIYVPFKVD------------VGEELKIVIPKLGDKKKIVE 345 Query: 357 LARTNAATALTSKLSQQST------VHQRLTALASVLKL-PEVKRMECFDISHTMGEQTV 409 L++ NA + Q V++ + + L+L E + +ECFD S+ G V Sbjct: 346 LSQRNAKYFRQERFKQMKIVDPDRHVNRVMAQMKEDLRLGKEPRHIECFDNSNIQGTNPV 405 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGG 468 A+CVVF P + +YR++NI + DD+A+M +V+ RRY + +++ + +P++I++DGG Sbjct: 406 AACVVFKNGKPSKKDYRKFNIKTVEGPDDFASMEEVVFRRYRRLLNEGEDLPELIIVDGG 465 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL+ L + + ++G+AK LE +F+ + L S L Sbjct: 466 KGQLSSGVKALETLGL---RGKIAIIGIAK------RLEEIFYPEDSIPLYLDKKSETLK 516 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 +IQ +R+E+H I HR KR+K + LE+I+G+G K LL + L+ ++ AS + Sbjct: 517 IIQQLRNEAHRFGITFHRNKRSKTALNTELESIQGIGEKTVVELLTHFRSLKRIKEASQK 576 Query: 589 EIAKVPGISQGL 600 E+A V G ++ Sbjct: 577 ELADVVGSAKAA 588 >UniRef50_D2ML33 Excinuclease ABC, C subunit n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML33_9BACT Length = 583 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 196/592 (33%), Positives = 329/592 (55%), Gaps = 14/592 (2%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 82 M GGT +Y+GKAK+L+ R+ SYF+ + LV ++ ID VT E+EAL +E+ Sbjct: 1 MKGPGGTPVYIGKAKNLRARVMSYFQRGSDRGQIPYLVREVDSIDYVVTEGESEALFIEN 60 Query: 83 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 141 + IK ++P+YN+ L+DDK++ + LS G+ PRL+ R + YFGPF +G ++ T Sbjct: 61 SLIKRHKPKYNIRLKDDKTFSSLRLSVGERFPRLSRTRRIRDDGALYFGPFASGKFLKST 120 Query: 142 LALLQKIFPIRQCENSVY-RNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLS 200 + L+ ++FP+R C S + R+ +RPCL Y + C GPC G +SEE+Y + V FL Sbjct: 121 VNLVHRLFPLRDCTQSKFERHSTRPCLNYFMKLCSGPCA-GKISEEDYGELVSQATSFLR 179 Query: 201 GKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG-DDLDVIGVAF 259 G+ +++ + ME AS++ +E AA RDQ+ +++ E + V+++ +D+D++G Sbjct: 180 GERKKLVRMIREMMERASEDGRYENAAYYRDQLVSLKENAEIEKVTSSRFEDMDIMGFYR 239 Query: 260 DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILL 319 D+ VL R G V+ + K P G E +E V F+G+FY +P +LL Sbjct: 240 DSENYEFTVLLSRGGSVVDKLDFSVKSPHGDE-AECVREFLGRFYFSD---HYIPKRVLL 295 Query: 320 DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQR 379 ++ D+ ++ L+E G+++ V+T RG ++ ++ A NA + K +++ Sbjct: 296 PLSIRDREGYSEWLTEKKGKRVYVETPRRGPKSELVRFAMKNARESFARKAEEKAEQGTL 355 Query: 380 LTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDD 438 L + + V +ECFDIS+ G QTVAS V F P R YR+Y IT DD Sbjct: 356 LRGIRKSAGITRVPYAIECFDISNIQGRQTVASLVRFRNARPERDRYRKYRITATKGQDD 415 Query: 439 YAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 + +M +V+ RR + +D+ +PD+ILIDGGKGQL A + V ++ L +A Sbjct: 416 FRSMYEVVYRRALRVAEDNWDLPDLILIDGGKGQLNAAYAALRDCGV---QDEVDLASIA 472 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 K R +G++ ++ +GE + ++ + +RDE+H AI HR R + S Sbjct: 473 KTEGR-SGVDRIYVHGKGEPCDFSSNKKGIYFLMRVRDEAHRFAITYHRGLRKEKTLASQ 531 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ + G+G KR+ +LL + G ++ ++ A+ EE+A V G+++ A I L+ Sbjct: 532 MDGVPGIGKKRKFLLLNHFGSVEKIKGATAEELAYVKGMTKQAARNIKEFLR 583 >UniRef50_A6NZD4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZD4_9BACE Length = 616 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 200/614 (32%), Positives = 323/614 (52%), Gaps = 24/614 (3%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQ 64 + K + +PGVY M D VIYVGKAK LK R+S YF + KT A+V+QI Sbjct: 5 ELKEKAHALPLKPGVYIMQDKHNVVIYVGKAKALKNRVSQYFADLASHTEKTRAMVSQID 64 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 DV V +E EAL+LE + IK +QP YN+LL+DDK YP+I L+ + +PR ++ A Sbjct: 65 HFDVIVADSEFEALVLESSLIKRHQPHYNILLKDDKGYPYIRLTVNEDYPRFSLANKAAD 124 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEG 181 YFGP+ + + + + L+ + C R + RPCL Y +G C G C G Sbjct: 125 DGARYFGPYGSRGSTQGIIDALRAALKLPSCNRRFPRDIGKERPCLNYHMGLCDGYCRFG 184 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + +E Y ++ L G+ +V ++ + ME A++ L FE+AA +RD+ +A+ + + Sbjct: 185 M-PQERYRDAIDQAIRLLEGQFKEVGDEIQAEMEQAAEELRFEKAAELRDRYRAIELLGK 243 Query: 242 KQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q V + + D DV+G +C VL G++ + P E+++VV V Sbjct: 244 RQKVMAGSLADTDVVGFHRGTAKSCFVVLHYVDGELAAKDWDLMETPMEEEIADVVSALV 303 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y + +Q LP +ILL + D+ LA LSE AGR++N+ T RG + ++LA Sbjct: 304 RQYYGERNQ---LPRQILLPCEIEDEVPLARLLSENAGRRVNLITPQRGAKMDLIRLANK 360 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 NA + +++ + L LA +LKL + RME +DIS+ + VAS VV+ Sbjct: 361 NAEEEVARWTTKEERTSKLLELLAKMLKLDKPPMRMESYDISNQGADDIVASMVVYQNAR 420 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----IPDVILIDGGKGQLAQA 475 PL+ +YRR+ + + DDYA+M QVL RR+ + +D + +PD++LIDGG+ A Sbjct: 421 PLKRDYRRFKLKDMDAPDDYASMEQVLTRRFRRYLDGDEKFKDLPDLLLIDGGENHAKVA 480 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V L +S + G+ K + PEG + + +I I++ Sbjct: 481 VKVLETLGLS-----IPVFGMVKDDRHRTRA---LVTPEGREIGIQANQAVFSLIGQIQE 532 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI HR+++ + S L+ I GVG KRR LLK+ ++ ++ A++EE+ Sbjct: 533 ETHRFAIEFHRQQQNQRVKGSVLDKIPGVGEKRRADLLKHFKSVKNIKAATLEELEAA-- 590 Query: 596 ISQGLAEKIFWSLK 609 + + A+ ++ + Sbjct: 591 VPKNTAKAVYDYFR 604 >UniRef50_A7VUD6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VUD6_9CLOT Length = 628 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 193/618 (31%), Positives = 310/618 (50%), Gaps = 31/618 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQ 65 + + + PGVY M +A +IY+GKAK LK R+S YF K +V+Q+ Sbjct: 8 LRTRAMALPAAPGVYLMKNASNEIIYIGKAKALKNRVSQYFGSPKNHPPKVRKMVSQVDH 67 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 D +T +E EAL+LE + IK + P+YN+LL+DDK Y +I ++ + R+ + + Sbjct: 68 FDYILTDSEFEALVLECSLIKQHTPKYNILLKDDKGYHYIKVTPKPYRRIFEAKQKLNDG 127 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVEGLV 183 EY GP+ + ++V++++ +KIF + C + R RPCL Y I +C PC G + Sbjct: 128 AEYIGPYTSSFSVKQSVDEARKIFKLPTCSRKFPQEIGRGRPCLNYFIKQCCAPC-RGKL 186 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 SEEEY V+ FL G + + +M A++NLEFE AARIRD+I AV+R+T KQ Sbjct: 187 SEEEYEGYVDEALEFLKGGSVVSVKDMTQQMNEAAENLEFERAARIRDRISAVKRITAKQ 246 Query: 244 FVSNTG-DDLD---VIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 V T + D + A A ACV V G++ + + F Sbjct: 247 KVVATKVREQDVVAMAQAAGAAAHACVVVFRFSGGRLCDQEEFML--GEIADGKTTRAEF 304 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+Y Q RT+P ++ LD + K L LSE AGR + + +G++A + + R Sbjct: 305 LQQYYAQ----RTVPPQVTLDGEVEGKEALRQWLSEKAGRSVKLTVPQKGEQAHLVDMCR 360 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 NA+ L + + L L +L L + +E +DIS+ G VA V F+ Sbjct: 361 RNASEKLAQQAGRTGREMGALDELGRLLGLAQPPEYIEAYDISNLAGSGNVAGMVAFENG 420 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-------SKIPDVILIDGGKGQ 471 PL++ YR++ I G DDYA+M +V+ RR + + ++PD+IL+DGGKG Sbjct: 421 RPLKSAYRKFKIKGFEGQDDYASMQEVISRRLQEYQEKKDTGEGFGRLPDLILLDGGKGH 480 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 +A + V + L G+ K + +G ++ A ++ Sbjct: 481 VAAVRPVLEAFGL-----QIPLFGMVKDDKHRTRA----IARDGGEIAINSSRQAFTLVS 531 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 I+DE H AIG HR+ R + +SSL +I G+GP R + LLK ++ + A ++E+ Sbjct: 532 QIQDEVHRFAIGYHRQTRKRTALSSSLTSIPGIGPSRAKALLKSFKTIKNIAQAELKELE 591 Query: 592 KVPGISQGLAEKIFWSLK 609 + P ++Q A+ ++ Sbjct: 592 QAPSMNQPAAQAVYDYFH 609 >UniRef50_C9RQJ8 Excinuclease ABC, C subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQJ8_FIBSS Length = 623 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 203/618 (32%), Positives = 322/618 (52%), Gaps = 31/618 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEA--LVAQIQ 64 + L + PGVY M +A G +IY+GKAK LK R+SSYF + + A ++ I+ Sbjct: 8 IERRLAELPLLPGVYIMKNAQGKIIYIGKAKVLKNRVSSYFDGSDHAGHRAATLMLPYIR 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 I+ +T +ETEAL+LE N I+ + P+YNVLL+DDK +P++ S + PRL + R K Sbjct: 68 DIEWIITESETEALILEANLIRKHTPKYNVLLKDDKHFPYLAFSVNEPFPRLFLSRSVKK 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGL 182 Y+GP+ + +R+ + ++F IR+C+ + NR RPCL Y IGRC PC GL Sbjct: 128 DGCLYYGPYMSSRMIRQLQDIAARLFQIRECKLKLPLNRPVRPCLNYHIGRCGAPCA-GL 186 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+ EEY ++V ++ L GK D ++ M AS+ ++FE AA+ RD IQA++ + Sbjct: 187 VTREEYQKKVAQTQMLLGGKRDDLIDLWEREMLEASERMDFETAAKKRDAIQALKATSAH 246 Query: 243 QF--VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 Q VS+ +DV+ + + MA + R G + G R Y + + +E+ V Sbjct: 247 QKTDVSDASLCVDVLSLKRNGTMAAAVIFEYRNGVLCGRRHYRLECKLEDDETEIFRQMV 306 Query: 301 GQFYLQGSQMRTLPGEIL----LDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 Q+Y+ + +PGEI L ++S++ + +L+ K+ + RG++ +LK Sbjct: 307 VQWYMD---VEFIPGEIATDVPLPTDMSERLSIEQALASKTTHKVVLTNPQRGEKLGFLK 363 Query: 357 LARTNAATALTS---KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASC 412 LA NA L ++ + S + + L VL L + R+EC DISH G TVAS Sbjct: 364 LASANADMILVEMRAEVQKYSEIDSSVFELQKVLGLKKTPFRIECVDISHLSGTNTVASL 423 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQ 471 V F P ++ YR++ I +T DD+A+M +V+ RR + ++ +PD+ + DGGKGQ Sbjct: 424 VAFKNGRPDKSNYRKFIIKTVTGVDDFASMREVMTRRIRRLEEEGIPMPDLWVCDGGKGQ 483 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 + + EL L+G+AK LE + F + + L SPAL ++Q Sbjct: 484 VDATMQILKELG---HDKDLPLIGLAK------RLEEIVFPDDRKSIVLHRTSPALKLLQ 534 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 + RDE+H AI R KR K L + GVG + R +L + +A +E+I Sbjct: 535 NARDEAHRFAITYQRSKRKKDLEVEWL-KMPGVGHETRIKILSKYKSAEAFMDAPLEDII 593 Query: 592 KVPGI--SQGLAEKIFWS 607 + G L E++ Sbjct: 594 DLLGKVRGAKLREQVAEY 611 >UniRef50_C7H041 Excinuclease ABC subunit C n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H041_9FIRM Length = 626 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 216/630 (34%), Positives = 329/630 (52%), Gaps = 33/630 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD +A +K + PGVY D+ G VIYVGKA +LKKR+ SYF + SRK +V QI Sbjct: 2 FDIEANVKKLPEVPGVYLHKDSTGKVIYVGKANNLKKRVQSYFSKTVKSRKVAYMVRQIT 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 + + VT E EAL+LE N IK Y PRYNVLL DDK+YP+I +S + +PR+ R + Sbjct: 62 EFEYIVTANEKEALILECNLIKKYMPRYNVLLTDDKTYPYIKISEDEEYPRITKTRRIEK 121 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +YFGP+ + +A E + LL KI+ +++C+ + + R CL Y IG+C G C+ G Sbjct: 122 DGAKYFGPYSDEFAANEIMDLLNKIYRLKKCKLQKFPDGMRACLNYHIGQCDGMCI-GKG 180 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + E+Y ++E + FL G+D ++ L +M+ AS + +E AA RD I + + + EKQ Sbjct: 181 NREDYLDRIEKAKDFLQGRDKSLIHTLRKKMQEASDGMLYESAAMYRDYITSAKSILEKQ 240 Query: 244 FVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 S+ G D+DV+ + V FIR GK G Y + ++E F+ Q Sbjct: 241 SASSVGMGDIDVLVPIVTDTAIKMLVFFIRDGKTCGREIYNMQQELAEGEEALLEGFIQQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 Y+QG+ P EI+L + L+ K LL + L E AG+K+ + RG + LK+A+ +A Sbjct: 301 NYVQGA---YFPDEIVLGYELNQKELLEELLHEFAGKKVYITCPVRGKKRELLKMAKKDA 357 Query: 363 ATALTSKLSQQSTVHQRLTALASVLK--LPEVK---------------RMECFDISHTMG 405 ++ +R L+ L L E+ +E +DIS+ G Sbjct: 358 EYLKGVIKTKDEASRERKKELSYKLGRILNEMNGGRYEYGFNDAGGEYTVEAYDISNING 417 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----IPD 461 VA VVF P ++ YR++ I I DDY +M +VL RR+ + + + +PD Sbjct: 418 IDNVAGMVVFTGFAPEKSRYRKFKIKSIEGQDDYGSMREVLFRRFTRYKEGAPGFSDLPD 477 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +I +DGG+G + A +V LD+ ++G+AK + + + + L Sbjct: 478 IIFMDGGRGHVNAALDVLKYLDL-----EIPVIGMAKDDKHRTKELVYKVGDKFKVYPLA 532 Query: 522 -PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 D+ L + I++E H +AI H R + S LE IEGVGPK+R LLK G ++ Sbjct: 533 GSDNFMLAYVGRIQEEVHRYAISYHISLRDRSMTKSILENIEGVGPKKRAALLKKWGTIE 592 Query: 581 GLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + AS EE+ GI+ LA KI K+ Sbjct: 593 AIEKASAEELEATEGINLKLALKIKEFFKN 622 >UniRef50_Q04EZ7 UvrABC system protein C n=42 Tax=Lactobacillales RepID=UVRC_OENOB Length = 607 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 205/601 (34%), Positives = 322/601 (53%), Gaps = 32/601 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + SQPG Y+M D G +IYVGKAK+LK R+ SYF++ + KT LVA I Sbjct: 6 IEQKLALLPSQPGSYQMKDKNGKIIYVGKAKNLKNRVRSYFKA-EHTGKTAELVANIHDF 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT+++ EA LLE+ IK Y+P +N+ L+ SYP+I ++ + PRL + KH G Sbjct: 65 EFIVTNSDKEAFLLENTLIKRYRPYFNIRLKFSGSYPYIEITNERDPRLILANTLKHDHG 124 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+PN YA ETL L+ +P+R+C + RPCL Y +G+CLG C V +E Sbjct: 125 TYFGPYPNVYAASETLHFLEMTYPLRRCNGY----QGRPCLYYSMGQCLGACWR-TVPQE 179 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV- 245 EY + ++ + FL+G+ + ++ + +M+ AS + E+E AA RD+++ + + E Q V Sbjct: 180 EYQKNIDAITRFLNGETGKAISDIKKKMKRASDSTEYELAADFRDRLKFIDQTVESQRVL 239 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D+ D G + + F+RQG++L + + + E +E+++ QFY Sbjct: 240 QNDHTPRDLFNFYMDKGWMTIEIFFLRQGRLLRQQK--ETLALADSVKEELESYIQQFYS 297 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 Q + + P E+L+ N+ D LLA++L I V+T RG++ LKLA NA Sbjct: 298 QKNAQK--PKEVLVPKNV-DTKLLAETLE------IPVRTPVRGEKRDLLKLAAKNARIT 348 Query: 366 LTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K + + + LK+P R E FD S+T G V++ VVF+ P Sbjct: 349 LEDKFRLMELNEEKTTGAMKEITDALKIPHGYRFEAFDHSNTQGSNYVSALVVFEDGLPN 408 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFA 480 + YRRY + T D+ A +V+ RRY + D+ ++ PD+IL+DGG+ QL A+ Sbjct: 409 KNLYRRYKLRTPTGQDEAKATFEVITRRYTRLRDEGQMYPDLILMDGGEIQLHSAEAALR 468 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 +LD+ + + K + GE L P S +++Q I+DE H Sbjct: 469 KLDI-----DIPVAAMVKNDKHQTA---DLLNSRGENLFLDPHSQGFYLLQRIQDEVHRF 520 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 I HR+ R K +S L+ I G+GPK R L++ G L + +AS+E+I + GI + + Sbjct: 521 VITFHRQLRTKTNLSSRLDEIAGIGPKSRVKLMRRFGSLPKIADASIEDIEAL-GIGEKV 579 Query: 601 A 601 A Sbjct: 580 A 580 >UniRef50_UPI0001C3237F excinuclease ABC, C subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3237F Length = 647 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 230/621 (37%), Positives = 342/621 (55%), Gaps = 38/621 (6%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + + QPGVY +A TVIYVGKAK +KKR++S+F SN +++ L+ I +I+ V Sbjct: 36 RALPDQPGVYLFRNAKSTVIYVGKAKSIKKRVASHF-SNPSTQMGRDLLPMIDRIESLVV 94 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFG 130 TE EALL E N+IK Y+PR+N+ LRDDKSYP+I +S + PR+ R + YFG Sbjct: 95 STEAEALLAEQNFIKQYKPRFNIRLRDDKSYPYIGISLDEDFPRVYFTRERHRRERAYFG 154 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-PCLQYQIGRCLGPCVEGLVSEEEYA 189 P+ N VRETL LL KIF R C+ RS PCL Y I RC PCV+ V++E Y Sbjct: 155 PYSNAKRVRETLDLLGKIFLFRSCDGPTPGRRSGSPCLDYYIKRCEAPCVD-YVTKEHYR 213 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN-T 248 ++ V FLSG+ + + + M+ A+ FE+AAR R++++++R + E+Q V+N + Sbjct: 214 TSIDGVIDFLSGRYRAIEAAIEANMKDAAAEQRFEDAARERNRLRSIRSLLERQRVTNAS 273 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 G LD I +A + A V IR G + + ++ G +L V E F+ Q+Y GS Sbjct: 274 GGTLDAIAIAVEGNDANAQVFQIRDGVLSDRQGFYLDNQAGDDLPAVAEAFLLQYY--GS 331 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL-T 367 + P ++ +A +L+E G + ++ RGD+ R L+LA NA AL Sbjct: 332 SLMIPPLLVVQREVGEAAQTIAAALAERRGGPVELRAAERGDKRRILELAERNARLALDQ 391 Query: 368 SKLSQQSTVHQR---LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L + QR L L + L L + R+ECFDISH G TVAS VVF+A P +A Sbjct: 392 ERLRSERRRQQRVDALEGLQAALGLDAIPLRLECFDISHVGGTHTVASMVVFEAGAPKKA 451 Query: 424 EYRRYNITGITPG--DDYAAMNQVLRRR---YGKAIDDSK-----------IPDVILIDG 467 +YRR+ + G DD+A+M +VL RR Y + D S +P+V++IDG Sbjct: 452 DYRRFTLREGVEGVPDDFASMEEVLSRRLAQYERQHDRSPFDDGYDASFASLPNVVVIDG 511 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL+ V + + ++ +AK +E +F LP D+P L Sbjct: 512 GKGQLSAGMRVLD----GFRRRGVTIVSLAK------RIEEVFVPGREAPIVLPHDTPEL 561 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 ++Q IRDE+H AIG HR +R + TS L+++ GVGP R++ LLK+ G + A+ Sbjct: 562 QLLQRIRDEAHRFAIGHHRIRRDRAMTTSVLDSLPGVGPARKRALLKHFGSPEAFLAATR 621 Query: 588 EEIAKVPGISQGLAEKIFWSL 608 EE+ VPG+ +A ++ + Sbjct: 622 EELEAVPGLPGKVARDLYVQI 642 >UniRef50_B3WE47 UvrABC system protein C n=33 Tax=Bacilli RepID=UVRC_LACCB Length = 602 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 208/612 (33%), Positives = 326/612 (53%), Gaps = 35/612 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + PG Y+M D G +IYVGKAK+LK R+ SYF+S+ K A+V+Q+ Sbjct: 6 IEHKLSLLPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYFKSS-HDGKVAAMVSQVADF 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 D VT T+ EA LLE I+ YQP YN+ L+ YP+I ++ + P++ + + G Sbjct: 65 DFIVTSTDKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKITHERDPKIEITGTIRKDGG 124 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+PN YA +ET+ +QK++P+R+C + RPCL Y +G+CLG C V E+ Sbjct: 125 YYFGPYPNVYAAQETMHFIQKVYPLRRCNGY----QGRPCLYYHMGQCLGACFR-TVPEK 179 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FV 245 EY Q+E ++ FL+G + L ++ME A++NL+FE AA IRDQ+ + + EKQ + Sbjct: 180 EYTDQIERIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKII 239 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 S+ D+ D G + V FIRQ +++ S V E E+F+ QFY Sbjct: 240 SHDNTTRDLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVN--TAKEEFESFILQFYS 297 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + + ++ P E+L+ L +K +LAD L I V+T RG++ + LA N+ Sbjct: 298 RKNNVK--PREVLVPAALDNK-VLADILE------IPVRTPQRGEKRDLMALAAKNSQIK 348 Query: 366 LTSKLSQQSTVHQ----RLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K ++ + L + L LP E FD SH G V++ V F P Sbjct: 349 LEDKFRLMELDNRTTIGAMKELMAALNLPMGHVAEAFDHSHIQGADPVSAMVQFVDGQPA 408 Query: 422 RAEYRRYNI---TGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKN 477 + YR+Y + D+ A +V+RRRY + + + + +PD+IL+DGG+ ++ AK+ Sbjct: 409 KNNYRKYKLDADKTHNGADEAANTREVIRRRYTRLLKERAPLPDLILMDGGEIEMNAAKD 468 Query: 478 VFA-ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 V EL++ + G+ K K L F + +L P S ++++ I+DE Sbjct: 469 VLENELNL-----DIPVAGMVKNNKHKTAA--LLFGNADQLINLDPKSQGFYLLERIQDE 521 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 H AI HR+ AK S LE I+GVGPK R LL+ + ++ A +E+I ++ GI Sbjct: 522 VHRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GI 580 Query: 597 SQGLAEKIFWSL 608 S+ +A+ + SL Sbjct: 581 SKKVAQALKLSL 592 >UniRef50_C7LTD0 Excinuclease ABC, C subunit n=2 Tax=Desulfovibrionales RepID=C7LTD0_DESBD Length = 605 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 222/602 (36%), Positives = 332/602 (55%), Gaps = 26/602 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQ 65 ++ L + + PGVY M +A G +IYVGKAK L++RL+SYF+ + K ++ +++ Sbjct: 3 SRKILPSFPTCPGVYLMKNATGRIIYVGKAKHLRRRLASYFQPEHRLAPKVRVMMTRVET 62 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 ID T TE EALLLE + IK ++P+YN++LRDDK Y LS P L + R Sbjct: 63 IDFLCTSTEKEALLLEASLIKKHRPKYNIVLRDDKQYVLFCLSRNHPFPALRLTRKVLRD 122 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 YFGPF + + RET ++ ++FP+R+C ++V+ NR+RPCLQY IGRCLGPC VS Sbjct: 123 GSVYFGPFTSALSARETKRVIDRLFPLRKCRDTVFSNRTRPCLQYHIGRCLGPCCL-PVS 181 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 EEEY Q V V LFLSGK D+++ L +M S L+FE AAR+RD I+A+R E+Q Sbjct: 182 EEEYRQVVRRVELFLSGKSDELMAGLHDQMMRLSDALDFEGAARLRDSIRALRETVERQA 241 Query: 245 -VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY-FPKVPGGTELSE--VVETFV 300 V + G DLDVIGV A + ++F+RQG+++ +++ F T +E + ++F+ Sbjct: 242 AVLSDGRDLDVIGVHGHENGAALAIVFVRQGRIIDGQAFWFADAAVDTPEAEAGLTDSFL 301 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y + R +P I+ F D L D+L+++ G + +V R + +A Sbjct: 302 MQYY---NAERFIPARIITAFGSQDP-ALEDALADMRGGRASVAKARGDQERRLVDIATA 357 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANG 419 NA L Q+ T+ R LA VL + EV+R+EC D SH GE VVF Sbjct: 358 NAK---AHALRQRRTIPTR-AELAGVLGVEGEVERIECVDASHIQGEGMRVGMVVFVDGR 413 Query: 420 PLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 ++ YR Y+ + DDY A+ RR A PD++LIDGGKGQL + Sbjct: 414 EEKSAYRVYSFPELEGTADDYLALASFAARR---AKSGPPWPDLLLIDGGKGQLGAVERA 470 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAG--LETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 AE +S L +AKG R+AG + +F +L P SP L +QH+RD Sbjct: 471 MAENGLSA----VPLASIAKGVSRRAGELGDVIFRPGRKNPLNLRPGSPELLFLQHVRDT 526 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H I R+ + + +S L+ + G+GPK ++L + +Q + A +E++A +PG Sbjct: 527 AHRFVISRLRRHKRAAQLSSDLDNLPGIGPKTARLLWDHFDSVQAMTQARIEDLAALPGF 586 Query: 597 SQ 598 Sbjct: 587 GP 588 >UniRef50_Q26GF0 Excinuclease ABC, C subunit n=5 Tax=cellular organisms RepID=Q26GF0_9BACT Length = 599 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 188/622 (30%), Positives = 325/622 (52%), Gaps = 41/622 (6%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 + + ++ + + PGVY+ YD ++YVGKAK+LKKR+SSYF N S + +++V + Sbjct: 2 ELSPLEVQIRILPTTPGVYQYYDKDHKLLYVGKAKNLKKRVSSYFTKNHDSYRIKSMVKK 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 I I+ V TE +ALLLE++ IK PRYN++LRDDK+YP++ + + PR+ + R Sbjct: 62 IVTIEHIVVETEMDALLLENSLIKNRNPRYNIMLRDDKTYPWLCIKKERFPRVFLTRRMI 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGP 177 EY+GPF + VR L L++ ++P+R C+ + + + + CL+Y IG C GP Sbjct: 122 KDGSEYYGPFSSVKTVRALLDLIKGLYPLRTCKYDLSADKINAGKYKVCLEYHIGNCAGP 181 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C E L+SE YA+ ++ VR + G S+M + N++FE+A RI+++++ ++ Sbjct: 182 C-ENLMSETAYAENIDNVRNIVKGDYKNASKHFESQMMELASNMQFEDAQRIKEKLEILQ 240 Query: 238 RVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 + K V N+ D+DV + D A ++ L + G ++ S + K E++ Sbjct: 241 KYQSKSTVVNSKITDVDVFSLISDETHAYINYLQLSHGAIVRSHTLEIKKKLEETDQELL 300 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 E + + + + E+ + F + G +I V GD+ + + Sbjct: 301 EIAIIEL---RQRFNSQCKEVYVPFEV------------KLGDQIKVTIPQLGDKKKIVD 345 Query: 357 LARTNAATALTSKLSQQST------VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 L+ NA + V + + + + L+L E +ECFD S+ G V Sbjct: 346 LSLRNAKFYRQEQFKTIKIVDPDRHVKRLMAQMKADLRLDEEPVHIECFDNSNIQGTNPV 405 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGG 468 A+CVVF P + +YR +NI + DD+A+M +V+ RRY + +++ +P ++++DGG Sbjct: 406 AACVVFKNGKPSKKDYRNFNIKTVEGPDDFASMEEVVHRRYRRLLEEGEPLPQLVVVDGG 465 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL+ L + + ++G+AK LE LF+ + L S L Sbjct: 466 KGQLSSGLKAIDRLGL---RGKITIIGIAK------RLEELFYPNDPVPLYLDKRSETLK 516 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 VIQ +R+E+H I HR KR+K + L+TI G+G K LL++ ++ ++ AS + Sbjct: 517 VIQQMRNEAHRFGITHHRNKRSKQAIETELDTIPGIGEKTAVELLRHFRSVKRIKTASKK 576 Query: 589 EIAKVPGISQGLAEKIFWSLKH 610 E+ + G+S+ A+KI K+ Sbjct: 577 ELEDIIGVSR--AQKIIDFYKN 596 >UniRef50_Q0F271 Excinuclease ABC subunit C n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F271_9PROT Length = 611 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 230/614 (37%), Positives = 351/614 (57%), Gaps = 25/614 (4%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 L + +PGVYRM D VIYVGKA++L+KR+SSYF+ S +T A+V Q++ I + Sbjct: 8 ALTALPREPGVYRMLDHARKVIYVGKARNLRKRVSSYFQRQPESPRTIAMVRQVRDIAFS 67 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 VT +E EAL+LEHN IK +PRYNVL++D K+YP+I LS + P+L M+RG + GEYF Sbjct: 68 VTPSEAEALVLEHNLIKQLKPRYNVLMKDSKTYPYILLSDEPFPKLTMYRGNRTLPGEYF 127 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPFPN AV +TL ++Q +F +R CE++V+ NRSRPC+Q+QIGRC PC + +VS+ +Y Sbjct: 128 GPFPNAGAVHQTLHIMQSMFLLRDCEDAVFNNRSRPCMQHQIGRCSAPCCD-IVSKAQYR 186 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 +QV+ VR FL G+D+ +L +M+ A+ ++FE+AA +RD+I+A+R V + Sbjct: 187 RQVDEVRQFLRGRDNDLLKGWEQQMQQAADAMQFEQAAILRDRIRALRSVLAGSEGGDLP 246 Query: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 DD D I + + R G+ LG+ + E++++ + + Y + Sbjct: 247 DDADGIVLIRHTTAVLACIGVRRSGRDLGTHNIRIDQATDAGELEILQSLLIERY----E 302 Query: 310 MRTLPGEILLDFNLSDKTLLADSLSELA-GRKINVQTKPRGDRARYLKLARTNAATALTS 368 P +IL++ + L ++ + G+K V + RG R ++L+ + A + S Sbjct: 303 KELPPADILVNTCKENIQELNRLIALIKPGKKTAVHSPVRGSRLQWLQQIGHSGAQIIAS 362 Query: 369 KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 + +Q + ALA +L + V R+ D +H G Q VA+ G + YRR Sbjct: 363 R--KQESQQPAFAALAEMLAMEVVPERIAAVDNAHLGGTQMVAAITYAGWQGAEKDYYRR 420 Query: 428 YNITGITP----GDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAEL 482 Y + GI GDDY AM VL R + +D+ PD++LIDGG+GQL A + Sbjct: 421 YKLDGIAGQVIEGDDYGAMQAVLERFFRAIREDTIPCPDLMLIDGGRGQLGVALQCATDA 480 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPE-------GEGFSLPPDSPALHVIQHIRD 535 + + L GVAKG R+ G ET++ G+ S AL +I +RD Sbjct: 481 GL----HELKLAGVAKGDARRVGEETIWPGWTDSGAIGIGKPLKPGRHSAALLLIARVRD 536 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H A RK++ + TS L+T+EG+GP +R LLK+ GG++G++ A +++A+ PG Sbjct: 537 EAHRFAGAYMRKRKKQSMFTSVLDTVEGIGPAKRISLLKHFGGIEGVKKAGRKQLAQAPG 596 Query: 596 ISQGLAEKIFWSLK 609 IS LAEKIF SL Sbjct: 597 ISDKLAEKIFLSLH 610 >UniRef50_B2RM62 UvrABC system protein C n=4 Tax=Bacteroidetes RepID=UVRC_PORG3 Length = 600 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 199/623 (31%), Positives = 321/623 (51%), Gaps = 39/623 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M + + L T+ +PG Y+ +D G VIYVGKAK+L++R+SSYF A RKT LV Sbjct: 1 MMTRDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILV 60 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 QI+ I V +E +ALLLE++ IK YQPRYNVLL+D K+YP I + + PR+ R Sbjct: 61 RQIRSIKYIVVDSEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRD 120 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSV-----YRNRSRPCLQYQIGRCL 175 K EYFGP+P + L L+++I+PIR C+ + + R R CLQY I +C Sbjct: 121 IKKDGSEYFGPYPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCK 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC+ G + EY V +R L G +++ RM+ S+ L FEEA +++I+ Sbjct: 181 GPCI-GNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQAYSEELRFEEAQICKERIEL 239 Query: 236 VRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + R K V D++DV D A ++ + I G + + + E Sbjct: 240 LERYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEE 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 ++ + + + + EI+L F+ +T G I RGD+ + Sbjct: 300 LLAAAITEL---RQRFESNAHEIVLPFDTGWQT----------GESITTTIPRRGDKRKL 346 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTAL------ASVLKLPEVK-RMECFDISHTMGEQ 407 L+L+ N A KL + ++ AL L L +ECFD S+ G Sbjct: 347 LELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTS 406 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILID 466 VA+CVVF P + +YR++++ + +D+A+M +++ R Y + +++ +PD+I++D Sbjct: 407 PVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYTRLTEENLPLPDLIVVD 466 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ A +L + ++G+A LE +FF + L S Sbjct: 467 GGKGQLSAAYETLDKLGL---IGKIPIIGLA------ERLEEIFFPKDPVPLILDKKSET 517 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L VIQH+RDE+H IG HR R+K + S L+ I+G+G K ++ LL++ ++ +R+A Sbjct: 518 LKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAE 577 Query: 587 VEEIAKVPGISQGLAEKIFWSLK 609 EE++ + I + A+ ++ L+ Sbjct: 578 EEELSAL--IGRNKAKLLYEGLR 598 >UniRef50_Q11YP9 UvrABC system protein C n=3 Tax=Bacteroidetes RepID=UVRC_CYTH3 Length = 596 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 193/612 (31%), Positives = 320/612 (52%), Gaps = 36/612 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M ++ D ++ LK + S PGVYR Y +IYVGKAK L+KR+++YF + +KT ++ Sbjct: 1 MLEKEDIRSLLKELPSSPGVYRFYSIEKELIYVGKAKSLRKRVANYFTNKKNLDQKTRSM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V +I + T+ ++E EALLLE+N IK +P+YNVLLRDDK+YPFI LS P L R Sbjct: 61 VRKIYHAEYTLVNSEYEALLLENNLIKENKPKYNVLLRDDKTYPFICLSSADFPTLTTTR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGRC 174 KGEYFGP+ +G A+ + L+K F IR C+ ++ + ++ + CL+Y IG C Sbjct: 121 KIDKKKGEYFGPYTSGRAMHSLVESLRKTFFIRTCDLNLTKQNIDAHKFKVCLEYHIGNC 180 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 GPC EG +E+Y + VR L G V +M +A+++++FE+A +++ Sbjct: 181 KGPC-EGKQEKEDYDVSIIQVRNILKGNFSSVKKYYQEKMLSAAEDMQFEKAQFFKERYN 239 Query: 235 AVRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 +V + + + N ++L+V + A V+ + I G ++ +R+ K Sbjct: 240 SVLGLEKSSLIVNPDINNLEVYTIVKRLNRASVNFMSILHGSIIKARTIEMKAVLDETEE 299 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 E++ + + + +G EI+ + L + V RGD+ + Sbjct: 300 ELLMHALFEIHEEGWDST---KEIICNIELP-----------ILSTYCKVSIPQRGDKKK 345 Query: 354 YLKLARTNAATALTSKLSQQSTVHQR--LTALASVLKLPEVK-RMECFDISHTMGEQTVA 410 + L+ NA LT Q+ + L L + L L E+ +ECFD S+ G VA Sbjct: 346 LIDLSLKNAWHTLTRYDDQKKEKPEIRVLKTLQADLSLKELPAHIECFDNSNIQGTNPVA 405 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGK 469 + V + P + +YR +NI + +D+A+M +++ RRY + ++ P +I+IDGGK Sbjct: 406 AMVCYKNGKPSKKDYRHFNIKTVEGPNDFASMYEIVYRRYKRMGEEGLPFPTLIIIDGGK 465 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL+ A +L++ ++ +AK LE LFF + + L S +L + Sbjct: 466 GQLSFACQALKDLNIYG---QIPIVSIAKN------LEELFFPGDNDPLYLDKKSESLKL 516 Query: 530 IQHIRDESHDHAIGGHRKKRAK-VKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 IQ IRDE+H AI HR+KR+K + E + G+GP + LL + ++ ++ AS+E Sbjct: 517 IQQIRDETHRFAITFHRQKRSKDALLKTEFENLVGIGPGTVKKLLTHFKTVKRIKEASIE 576 Query: 589 EIAKVPGISQGL 600 ++ V G S+ Sbjct: 577 QLTPVIGNSKAT 588 >UniRef50_A1ZTX2 Excinuclease ABC, C subunit n=4 Tax=Bacteroidetes RepID=A1ZTX2_9SPHI Length = 601 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 205/620 (33%), Positives = 328/620 (52%), Gaps = 44/620 (7%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQ 65 +A LK + + GVY+ +D ++YVGKAK+LK R++SYF + +RKT LV QI Sbjct: 4 IEATLKQLPTNAGVYKFFDKNNVLLYVGKAKNLKNRVNSYFNKSAQHNRKTINLVKQIAH 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D TV ++E +ALLLE+N IK YQP+YN+LL+DDK+YP+I ++ + P+L + R + K Sbjct: 64 VDYTVVNSEFDALLLENNLIKNYQPKYNILLKDDKTYPYILITNEPFPKLVVTRKLEKNK 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGRCLGPCVE 180 G ++GPF N A+ + L+++++ IR C + + N+ + CL+Y +G C PC E Sbjct: 124 GRFYGPFTNLKAMNAIVELIRELYTIRTCNLHLSKENIQQNKFKLCLEYHLGNCQAPC-E 182 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GL SEE+Y + +E+ + + G V T L +M ++ LEFE+A + ++ ++ + Sbjct: 183 GLQSEEDYLKDLEHAKHIMKGNIHIVKTYLKEQMLAYAEKLEFEKAESQKQKLASLDKFQ 242 Query: 241 EKQFVSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 K V N D DV + D + V+ L I+ G ++ ++S E++ Sbjct: 243 SKSLVVNPNKVIDTDVFSIISDENYSYVNFLKIKNGAIIHTQSIEIAKKLDETEEEILT- 301 Query: 299 FVGQFYLQGSQMRTLPGEIL-LDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 + F L+ + P I L N+SD + GD+ + L L Sbjct: 302 -LVAFNLRDTIGSNAPEIITNLPLNISDD-------------RFTNTIPKIGDKKKLLSL 347 Query: 358 ARTNA----ATALTSKLSQQSTVHQR--LTALASVLKLPEVKR-MECFDISHTMGEQTVA 410 ++ N + +L +Q R L L VL++ E+ R +ECFD S+ G VA Sbjct: 348 SQKNVLYYKKEKIQQRLLRQGKDKSRVVLEELQQVLRMKELPRHIECFDNSNIQGIYPVA 407 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGK 469 S V F P + YR +NI + DD+A+M +++ RRY + + + +++P +I+IDGGK Sbjct: 408 SMVFFRNGFPYKKGYRHFNIKTVVGPDDFASMKEIVHRRYKRLLYEKAELPQLIVIDGGK 467 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL+ A ELD+ ++G+AK LE ++F + + SPAL + Sbjct: 468 GQLSAACEALKELDLYG---EITIIGIAKK------LEEIYFPEDSIPLHISKKSPALKL 518 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 +Q +RDE+H AI HR KR+ S LE IEGVG K LL++ + + AS +E Sbjct: 519 LQKVRDEAHRFAIEFHRNKRSNDSLHSELEAIEGVGEKTITSLLRHFKTVNNVAQASTQE 578 Query: 590 IAKVPGISQGLAEKIFWSLK 609 IAKV G + A I + Sbjct: 579 IAKVVG--KAKANLIRAYFE 596 >UniRef50_B1CBT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBT5_9FIRM Length = 622 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 200/626 (31%), Positives = 334/626 (53%), Gaps = 33/626 (5%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQ 64 + +K + GVY M D GT+IYVGKAK LK R++ YFR N + K +V I Sbjct: 8 NLNNKIKLLPENSGVYLMKDENGTIIYVGKAKVLKNRVTQYFRKNSNHTPKVLKMVENIA 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 + +T+ E EAL+LE N IK Y+P YN+L+RDDK+YP+I ++ D +P+L + R + Sbjct: 68 DFEYIITNNEMEALILECNLIKKYRPYYNILMRDDKTYPYIKITIKDEYPKLFVTRKYIN 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEG 181 +YFGP+ N ++ ++ + +++PI C+ + + CL Y IG+CLG C +G Sbjct: 128 DGNKYFGPYANATYAKKAVSTINELYPIAMCKKELKSGVKKGNVCLNYHIGQCLGVC-QG 186 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + + Y + ++ + L+GK +++ L ++M S+NL+FE A ++RD+I A+R + Sbjct: 187 NIDTKLYNRYIKEIIDILNGKTSKIIQSLENKMNGYSENLDFENAGKVRDKIFAIRGLKS 246 Query: 242 KQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q VSN D++D++G+A MACV V +R K++G +Y K ++SEV+ F+ Sbjct: 247 EQNVSNANADNMDILGLAMAEDMACVQVYALRDKKIVGRENYILKGQNEKDVSEVLAAFI 306 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 QFY + +P IL++ D + D L+ L +K+ ++ +G++ + LKLA Sbjct: 307 KQFY---TNTPFIPPLILVEKEFEDIDNIKDLLTNLKSKKVEIKVPVKGEKKKLLKLATD 363 Query: 361 NAATALTSKL-SQQSTVHQRLTALASVLKLPEVK-----RMECFDISHTMGEQTVASCVV 414 NA L + + ++ A+ + K + R E +DIS+T G +V VV Sbjct: 364 NAKLNLENIIGKEKQKALMEKKAVEEINKYANISKEGNFRYEAYDISNTSGVDSVGVMVV 423 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----------KIPDVIL 464 FD YR++ + I +DY +M +V+ RR +A + +PDVI Sbjct: 424 FDGAKRNYKAYRKFKVKSIEGPNDYGSMVEVVFRRLNRAQKELKQNDDNPRFLPLPDVIF 483 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGG G + KNV D + +LG+ K K + E ++ Sbjct: 484 VDGGIGHVNAVKNVVDTFDFNIK-----VLGLGKNNKHKLKE---VVKNNEEARNIRDFE 535 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 A ++ I +E H AI H+ R+K ++LE IEG+G + + LLK+ ++ L+N Sbjct: 536 FAGKLLNDISEEVHRFAIDYHKNLRSKSFLKTTLEEIEGIGKVKCRNLLKHFKNMEELKN 595 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLKH 610 AS+EEI KV G+++ LA+K+ K+ Sbjct: 596 ASIEEIVKVDGMNEELAKKVKDHFKN 621 >UniRef50_A8SNK4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNK4_9FIRM Length = 620 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 180/626 (28%), Positives = 314/626 (50%), Gaps = 31/626 (4%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 +FD LK + PGVY MYD +IYVGK+ LK R+ SYF +N +K +A+V Sbjct: 6 KEFDINYELKKLPDLPGVYIMYDKDDKIIYVGKSVSLKNRVRSYFTTNHKYKKVQAMVEH 65 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 I + + + + ETE+L+LE N IK +P+YN+ L+DDK YP+I ++ + P++ R K Sbjct: 66 IHRFEYIIVNNETESLVLEANLIKKNRPKYNINLKDDKQYPYIKITNEKFPKILKVRDIK 125 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS--RPCLQYQIGRCLGPCVE 180 K +YFGPFP + + + L I+ IR C+ + + + RPC+ Y +GRC PC + Sbjct: 126 EDKAQYFGPFPTISDLEKLMELSILIYNIRDCKLNFDKGKFLQRPCMSYYLGRCSAPCTQ 185 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + E Y V+ V FLSG ++ L++RM+ +S E+E A + RD + + + Sbjct: 186 N-IDRENYNNDVKRVIKFLSGDTTEIKEILLNRMKQSSAKEEYELAMKYRDFLSEIDYLF 244 Query: 241 EKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 KQ + +I A+ + V + + G V+ + + + E+ E+ Sbjct: 245 TKQIFNIKKFKEYHLISYAYAENILVVAIFIVNDGLVVDRKHFIVENILDLEVEELFSNV 304 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSD-KTLLADSLSELAGRK-INVQTKPRGDRARYLKL 357 + QFY+ E+ +D++ ++ L+ + K I+V+ +G + +K+ Sbjct: 305 IRQFYISHHNK---VKEVYIDYSDEKFLNEISLFLANIFSEKSISVKNPKKGVKFDQMKI 361 Query: 358 ARTNAATALTSKLSQQSTVH----QRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 + NA LT + ++ Q + L ++L + + R+EC+DIS+ G+ V S V Sbjct: 362 LQKNANEILTKHIFDNKNINVKYLQAINYLKNILDIDNLDRIECYDISNISGDFNVGSMV 421 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD---------SKIPDVIL 464 V+ +YR++ I + DDY++ ++L RR+ + +D+ S+ PD+IL Sbjct: 422 VYKNGFKSSKDYRKFKIKTVVGQDDYSSHREMLTRRFNRFLDEKINSAGSSFSEKPDLIL 481 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGGKG + AK V E ++ ++G+ K + + F E L ++ Sbjct: 482 MDGGKGHVNVAKEVLLEKNL-----DVPVIGLVKNDKHRTKG--IIF--EDNYIELDINT 532 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 + I++E H AI HR + K S L+ I+GVG ++ LL + G + ++ Sbjct: 533 NIYRFLFDIQEEVHRFAINYHRSLQNKKLQNSVLDEIKGVGEIKKIKLLSHFGSISSIKK 592 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLKH 610 ASVEE+ V + + A+ IF + Sbjct: 593 ASVEELLMVDKMDKKTAKNIFEFFNN 618 >UniRef50_Q5LIY7 UvrABC system protein C n=26 Tax=Bacteroidetes RepID=UVRC_BACFN Length = 608 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 189/619 (30%), Positives = 326/619 (52%), Gaps = 39/619 (6%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K + + +PG+Y+ +A GT+IYVGKAK+LK+R+ SYF KT LV++I I Sbjct: 13 LKGIVSNLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADI 72 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 V ++E +ALLLE+N IK Y+PRYNVLL+DDK+YP I + + PR+ R Sbjct: 73 RYIVVNSEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQNEYFPRVFKTRRIIRNGS 132 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-----PCLQYQIGRCLGPCVEG 181 Y+GP+ + ++ L L++ ++P+R C ++ R CL+Y I C GPC+ G Sbjct: 133 SYYGPYSHSPSMHAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCI-G 191 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L S+EEY + + ++ L G ++ L RM+ + ++FEEA +++++ + Sbjct: 192 LQSQEEYLKNIAEIKEILKGNTQEISRLLYQRMQDLAAEMKFEEAQKVKEKYALIENYRS 251 Query: 242 KQ-FVSNTGDDLDVIGVAFDAGM-ACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 K VS+ ++DV + D A ++ L I G + + ++ K E++ Sbjct: 252 KSEVVSSVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLG 311 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + + + ++ EI++ F++ E+ + RGD+ + L+L+ Sbjct: 312 IIEM---RERYKSASREIIVPFDI-----------EIELNDVTFTIPQRGDKKKLLELSL 357 Query: 360 TNAATALTSKLSQQSTVH------QRLTALASVLKLPEVK-RMECFDISHTMGEQTVASC 412 N ++ Q ++ + + + L L + ++ECFD S+ G VA+C Sbjct: 358 LNVKQYKADRMKQAEKLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAAC 417 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQ 471 VVF P +++YR+YNI + DDYA+M +V+RRRY +AI ++S +PD+I+ DGGKGQ Sbjct: 418 VVFKKAKPSKSDYRKYNIKTVVGADDYASMKEVVRRRYQRAIEEESPLPDLIITDGGKGQ 477 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 + + V EL + + G+AK DRK + F + + SP +++ Sbjct: 478 MEVVRQVMEELQL-----DIPIAGLAK--DRKHRTSEVLFGFPPQTIGIKQHSPLFRLLE 530 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 I+DE H AI HR KR+K + S+L+ I+G+G K + LLK ++ ++ A++EE++ Sbjct: 531 QIQDEVHRFAITFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEATIEEVS 590 Query: 592 KVPGISQGLAEKIFWSLKH 610 + I + A+ I L + Sbjct: 591 AI--IGESKAKIIKEGLDN 607 >UniRef50_Q5GSR4 UvrABC system protein C n=10 Tax=Wolbachia RepID=UVRC_WOLTR Length = 606 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 206/606 (33%), Positives = 323/606 (53%), Gaps = 16/606 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K ++ GVY+M V+YVGKAK+LK RLS+Y R S +T+ +++Q+ ++ Sbjct: 10 IKKQIELSPQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKV 69 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 +V VT E +ALLLE IK +P YN++ +D +SYP+I +S +PR+A +RG Sbjct: 70 EVLVTENEIDALLLEARLIKSLKPPYNIIFKDGRSYPYIVISKHNYPRIAQYRGKFKKGE 129 Query: 127 -EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 Y+GPF + AV++T+ LQK F +R C + + + RPC++YQI RC PCV G +++ Sbjct: 130 FHYYGPFISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCV-GKITK 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 ++Y Q V+ R L G++++V QL S ME S+ +E AA RD+++ + ++ + Sbjct: 189 DDYCQSVKQTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMD 248 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + D D G+A +AC+ VL R GS YF + E++ TF+ + Y Sbjct: 249 FSFEKDADFFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLY- 307 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + P +I + ++ K ++ +L + + I LK N+ + Sbjct: 308 --NSANIPPAQIYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRS 365 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAE 424 L KL+ ++ L+ + LP + R+E +D SHT G Q V VV G L++E Sbjct: 366 LEQKLTDYKNNLEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLKSE 425 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YR++ I G GDDY M +VL RR+ D +PD +LIDGG G ++ +NV L++ Sbjct: 426 YRKFTIKGEILGDDYEMMREVLTRRFSNNTKDV-VPDFLLIDGGPGHISVVQNVLNTLNI 484 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 + +AKG+ R AG E + E F+L DS + +Q +R+E+H AI Sbjct: 485 N-----VPFACMAKGSYRNAGNERFYMPNR-EDFTLKNDSKVMLYLQSLRNEAHRFAITS 538 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 HRKKR K S L I +G KR+ L+ + G ++ + AS+ EI V IS+ LAE I Sbjct: 539 HRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVI 598 Query: 605 FWSLKH 610 LKH Sbjct: 599 ---LKH 601 >UniRef50_D1PLG8 Excinuclease ABC subunit C n=3 Tax=Ruminococcaceae RepID=D1PLG8_9FIRM Length = 616 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 192/615 (31%), Positives = 306/615 (49%), Gaps = 31/615 (5%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQIDVTVTH 72 + PGVY + D T+IY+GKAK LK R+S YFR K ++A DV V Sbjct: 13 LPLLPGVYIIRDKSDTIIYIGKAKRLKTRVSQYFREGVPHDAKVTQMIAHAFTFDVIVCQ 72 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPF 132 +E EAL+LE + IK + P+YN+LL+DDK Y ++ ++ PR++ +Y GPF Sbjct: 73 SEFEALVLEASQIKAHTPKYNILLKDDKGYSYVKVTKGPWPRISAALQKDDDGADYIGPF 132 Query: 133 PNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 + +AVRE + + Q F + +C R + RPCL IG+C+ C G +S E Y + Sbjct: 133 TSSFAVREMVEMAQDCFLLPRCNREFPRDFGKGRPCLNAHIGKCMAVC-SGKISCEAYNE 191 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 V+ + ++ QL +ME AS+ L+FE AA +RDQIQA+ RV Q V GD Sbjct: 192 AVQGALRMIRYGKKDIVKQLREKMEAASERLDFETAALLRDQIQAIERVAAGQKVVMDGD 251 Query: 251 -DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 ++DVI +A C VL R G++ R + T++ +V E F+ Q+YL G Sbjct: 252 TEMDVIALAGTTRAVCAAVLRYRDGRLTDKREFVFH--DTTDIEQVREEFLPQYYLDG-- 307 Query: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 T+P I +D +D L ++L++ G K+ + RGD A+ + +A TNA L + Sbjct: 308 -ETIPKIIAVDKLPADAEALNEALNQTRGSKVELYVPQRGDVAKLVTMAYTNAVERLGRE 366 Query: 370 LSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 + + + L A +L L R +E +DIS+ +V VVF P R+ YRR+ Sbjct: 367 SGRYTREEKLLEEAAQMLGLKAPPRVIESYDISNWGDGSSVCGMVVFKDGKPHRSGYRRF 426 Query: 429 NITGITPGDDYAAMNQVLRRR---YGKAIDDSKI----------PDVILIDGGKGQLAQA 475 + + DDYA++ + L RR Y A K PD++LIDGG+GQ+ Sbjct: 427 KMKTVAGTDDYASLAETLSRRAAEYEAARRGEKPDGPQNQFATLPDLLLIDGGRGQVGAV 486 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 K + H G+ K + + G ++ + + +I+D Sbjct: 487 KQALKGTAL----EHVPTFGMVKDDHHRTRA---IVDDAGGEIAINRNRNIFTFVTNIQD 539 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H +A ++ K ++L + GVG K LL + + ++ AS+ ++ +V G Sbjct: 540 ETHRYANDYRKRAMKKRSYAATLTALPGVGEKTSAALLAHFKTVAAVKAASISDLEEVKG 599 Query: 596 ISQGLAEKIFWSLKH 610 IS AEK++ +L++ Sbjct: 600 ISHAKAEKLYNALRN 614 >UniRef50_Q7V7L7 UvrABC system protein C n=43 Tax=Cyanobacteria RepID=UVRC_PROMM Length = 667 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 198/643 (30%), Positives = 336/643 (52%), Gaps = 48/643 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEAL 59 + D+ + LK + ++PG Y M D ++YVGK+K L+ R+ SYFRS+ + + Sbjct: 28 LKDENRLEQRLKEIPAEPGCYLMRDVEDRLLYVGKSKCLRNRVRSYFRSSSDHGPRIRLM 87 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V QI +I+ VT +E E+L+LE N IK QP +NVLL+DDK YP++ ++ + +PR+ + Sbjct: 88 VRQIAEIEFIVTDSEAESLVLESNLIKNQQPHFNVLLKDDKKYPYLCITWSEEYPRIFIT 147 Query: 119 RGAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 R + + ++GP+ + +R TL L+++ FP+RQ +++ R CL Y IGRC G Sbjct: 148 RRRRFRNKNDRFYGPYVDVGLLRRTLLLVKRSFPLRQRPRPLHQ--DRTCLNYSIGRCPG 205 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 C + ++ ++Y Q + V + G++ ++ L +ME S +++E AA IRDQI+ + Sbjct: 206 VC-QQKITPQDYHQVLRKVAMVFQGRNQELKVLLEKQMERYSDRMDYESAANIRDQIKGL 264 Query: 237 RRVTEKQFVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 ++TE Q +S ++ DV+ +A D +A V + +R GK++ + L Sbjct: 265 EQLTEGQKMSLPDSSVSRDVLAIASDHRVAAVQLFQMRAGKLVNRLGFTADAV-DQTLGS 323 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 V++ + + Y Q +P E+L+ ++L + LL D LSE GR++ + R +A Sbjct: 324 VLQRVIEEHYSQV-DAVEVPPEVLVQYSLPQQELLVDWLSEHRGRRVQISCPQRQAKAEL 382 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCV 413 ++L NA L+ S Q LA +L+L + +R+E +DISH G VAS V Sbjct: 383 IELVERNAVFELSRAKSGQQQQELATEDLAQLLELTTQPRRIEGYDISHIQGSDAVASQV 442 Query: 414 VFDANGPLRAEYRRYNITGIT----PGDDYAAMNQV--------------------LRRR 449 VF P + YR+Y I + DD+ AM ++ L+R Sbjct: 443 VFIDGLPAKQHYRKYKIKSSSIKSGHSDDFMAMAEIMRRRFRRWARVKQEGSNFENLQRC 502 Query: 450 YGKAIDDS---KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGL 506 G A+ PDV++IDGGKGQL+ A ELD+ ++ +AK Sbjct: 503 SGSALQTDGLNDWPDVVMIDGGKGQLSSAMEALRELDL---HEDLVVCSLAKK------H 553 Query: 507 ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP 566 E +F + + PD + +++ +RDE+H A+ HR++R N S L I G+GP Sbjct: 554 EQIFVPGQSKPLDSDPDQLGVVLLRRLRDEAHRFAVSYHRQQRGVRMNRSRLTDIPGLGP 613 Query: 567 KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 +R + LL + + ++ ASV++I++ PG+ LA +++ Sbjct: 614 RRVRDLLAHFQSIDAIQLASVQQISQAPGLGPALALQVWTYFH 656 >UniRef50_C6X0K5 Excinuclease ABC subunit C n=9 Tax=Bacteroidetes RepID=C6X0K5_FLAB3 Length = 611 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 185/608 (30%), Positives = 316/608 (51%), Gaps = 38/608 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + + LKT+ S+PGVYR YD ++YVGKAK LKKR+ SYF NL +T +VA+I + Sbjct: 17 NLELQLKTLPSEPGVYRYYDKNDQLLYVGKAKHLKKRVLSYFNKNLPGYRTRIMVAKIHR 76 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ T+ +E +ALLLE+N IK +QP YNV+L+DDKSYP+I + + PR+ + R Sbjct: 77 LETTIVPSEYDALLLENNLIKEHQPFYNVMLKDDKSYPWICIKNEDFPRIFLTRTMIKDG 136 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGRCLGPCVE 180 EY+GP+ + L ++ I+ +R C ++ + + CL++ I C GPC E Sbjct: 137 SEYYGPYARVRPAKVLLDTIKHIYKLRTCTLNLSPPKIAEGKYKVCLEFHIKNCQGPC-E 195 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 L S+E+Y +++ +R + G + L+++M ++NL+FE+A +++++ + Sbjct: 196 MLESKEDYDLKIDAIRGIIKGDFKRAKEYLVNQMMKYAENLQFEDAHVVKERLDMLENYQ 255 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 K V N DD+DV G+ D A V+ I+ G ++ S + K +++E Sbjct: 256 HKHTVVNPNIDDVDVFGMTSDETAAYVNYFKIQNGNIIQSFTTEIKKILDESDEDILEEA 315 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + EI FN K +L L + + GD+ R ++L+ Sbjct: 316 M--------------IEIRQKFNSDSKEILLPFHLTLEIPNVKLIVPKVGDKKRIVELSE 361 Query: 360 TNAATALTSKLSQ------QSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASC 412 NA KL + ++ + + +L++P E + +E FD S+ G V++C Sbjct: 362 KNAKEYRIEKLKAVQIVDPERHTNRIMAEMQKLLRMPVEPRHIEGFDNSNIQGTNPVSAC 421 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQ 471 VVF P +A+YR ++ + +D+A M +V+ RRY + ++++ +P +ILIDGGKGQ Sbjct: 422 VVFKNGKPSKADYRIFHPKTVEGANDFATMEEVIHRRYRRLLEENSPLPQLILIDGGKGQ 481 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L+ A L + ++G+AK LE ++F + L S L ++Q Sbjct: 482 LSSAVKSLKLLGLYGK---ITIIGIAK------RLEEIYFPEDPIPLYLDKKSETLKILQ 532 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDESH + HR +R S LE I G+G K +LL + ++ ++ +S E + Sbjct: 533 RVRDESHRFGVKHHRTRRKNSTIKSELEEIPGIGEKAVDLLLSKLKSVKRVKESSRETLE 592 Query: 592 KVPGISQG 599 ++ G S+G Sbjct: 593 EILGKSRG 600 >UniRef50_C3JAE7 Excinuclease ABC subunit C n=2 Tax=Bacteria RepID=C3JAE7_9PORP Length = 604 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 185/618 (29%), Positives = 321/618 (51%), Gaps = 38/618 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + K L T+ PG Y+ Y+A G +IYVGKAK+L++R+SSYF+ RKT LVAQI Sbjct: 5 EIKKILPTLPLSPGCYQYYNAEGEIIYVGKAKNLRRRVSSYFQKEHTDRKTRQLVAQIVD 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 + V E++ALLLE+N IK YQP+YN+LL+DDKSYP I ++ + PR+ + R + Sbjct: 65 VKYIVVANESDALLLENNLIKTYQPKYNILLKDDKSYPSIVVTREPFPRIFVTRTIDPSW 124 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENS-----VYRNRSRPCLQYQIGRCLGPCVE 180 G+Y+GP+ + + ++++++ +R C + + R + CLQY I RC PC E Sbjct: 125 GDYYGPYTSVAMAHGMVGIIREMYKVRTCRHRFTQEAIERGKYARCLQYHIKRCEAPC-E 183 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GLVS E+Y + L G QV+ Q SRM S+ L +EEA + + ++ ++ + Sbjct: 184 GLVSREDYLNNIAAAVELLKGNLRQVIQQTTSRMLALSEELRYEEAGQEKARLAMLQAYS 243 Query: 241 EKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 K V+ T D+DV + MA V+++ + +G ++ + + K E ++ T Sbjct: 244 TKHIVAPETRHDIDVFSYEEEGPMAYVNMMQVHEGAIVRALTVEYKKAIDEEAEDIFATA 303 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + + + + E++L + L ++L S + +G++ + L+L+ Sbjct: 304 ITEL---RGRYESRAKEVILPYPLGWESLGHFS----------ITIPKQGEKKKLLELSI 350 Query: 360 TNA------ATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASC 412 N KL+ + V + + + L LP R +ECFD S+ G VA+C Sbjct: 351 DNVKRYKLDQLKRAEKLNPEQRVQRLMNKMIEDLHLPVAPRYIECFDNSNLQGTAPVAAC 410 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQ 471 VVF P + EYR++++ + DD A+M +++ RRY + ++ +P +I+IDG +GQ Sbjct: 411 VVFRNGKPSKKEYRKFHVKTVEGADDLASMREIVERRYRRLQEEELPLPQLIVIDGARGQ 470 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L A + + + ++G+A +E ++F E L DS L + Sbjct: 471 LEVAVETLSAMGIGAPTT--TIIGLA------ERMEEVYFPGEENPLFLSRDSETLRTLM 522 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H I HR R+K + S+L+ I+GVG + ++ LL++ ++ + A + E+ Sbjct: 523 QIRDEAHRFGITFHRSIRSKNQIHSALDDIDGVGKQTKEALLRHFRSVKRIEAAELPELE 582 Query: 592 KVPGISQGLAEKIFWSLK 609 + I + ++ +L Sbjct: 583 SL--IGKKRGGIVYKALH 598 >UniRef50_C0QWI5 Excinuclease ABC, C subunit n=2 Tax=Brachyspira RepID=C0QWI5_BRAHW Length = 613 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 194/618 (31%), Positives = 316/618 (51%), Gaps = 35/618 (5%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 LK + + GVY M D+ +IY+GKAK LKKR+SSYF ++ KT ALV I+ I+ Sbjct: 12 KLKRIPDKSGVYFMKDSKSEIIYIGKAKSLKKRVSSYFNNSNKDAKTTALVEHIRDIEYI 71 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG--- 126 +T E EAL+LE I+ ++P YN+LL+D KS+PFI ++ + PR+ R Sbjct: 72 LTENEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAITNEHFPRVIKARNVIDKDNARK 131 Query: 127 --EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEGLV 183 +Y+GP+ + + F +R+C+ R+ RPCL + IG+C PC + L+ Sbjct: 132 YKKYYGPYVAAERADNIVKFIIDNFKLRRCKYDFPLKRAIRPCLYHHIGKCTAPCAD-LI 190 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 EE+Y + ++ + L G D+++ +L M ++ LEFE A +RD+I ++ +T +Q Sbjct: 191 KEEDYDKTIDDAIMVLEGNVDELVARLKQEMFVHAEKLEFEAAKDLRDKIDLLKYITVEQ 250 Query: 244 FV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE---------LS 293 + DD+D+IG + G + +L ++ GK+ +++ + P + S Sbjct: 251 SIYIPESDDIDIIGAYGENGNYTIVILSVKGGKLADRKTFSMQSPNDEDYYNENGMSKYS 310 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 E++ F Q+Y + +P I DF L+D ++ D L +++GR +++ K R Sbjct: 311 EILSAFFTQYY---THANLIPASISTDFPLNDVDIIKDYLKQVSGRDVDI--KLDKSRKG 365 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASC 412 + +A NA K + V +T L + KL + +E FDI+H G T+A Sbjct: 366 LMAIANENAKHLFKEKALIRE-VPLGITRLQEIFKLKKAPSIIESFDIAHIQGSYTMAGM 424 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQ 471 V F YR +N+ +T DD+A++ + + RRY + D++ PD+ILIDGGKGQ Sbjct: 425 VRFVNGVSDNKNYRIFNMKTVTGIDDFASIKEAVYRRYKRLRDENLTFPDLILIDGGKGQ 484 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L A ELD+ ++ +AK E ++ E L + PA +Q Sbjct: 485 LNSAIEALKELDIKGQ----PIMALAKK------FEEIYLPNRNEPVQLSDNEPARLFLQ 534 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H H KKR++ S LE+IEG+G K + L + + ++NAS E I Sbjct: 535 KVRDETHRWVNSSHGKKRSREMVRSELESIEGIGKKTIEKLYSHFINIDNIKNASFESIR 594 Query: 592 KVPGISQGLAEKIFWSLK 609 +PGIS A I+ Sbjct: 595 NIPGISYKAANNIYDHFH 612 >UniRef50_B0MPX2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPX2_9FIRM Length = 585 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 176/597 (29%), Positives = 310/597 (51%), Gaps = 23/597 (3%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVTHTETEALLLE 81 M D G +IYVGKAK LK R+++YF + + KT LV I D VT +E +AL+LE Sbjct: 1 MKDKTGRIIYVGKAKALKNRVTTYFHALESHNAKTRKLVENIYDFDFIVTPSELDALVLE 60 Query: 82 HNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 141 + IK Y P+YN+LL+DDK Y +I ++ + +PR++ EY GPF +G+ ++ Sbjct: 61 CSLIKQYNPKYNILLKDDKGYNYIKITKEPYPRISYALNCNDKNAEYLGPFTSGFTAKQA 120 Query: 142 LALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFL 199 + + +IF C R + RPCL Y I RC+G C G + ++EY + ++ Sbjct: 121 VDEVNRIFMFPSCHKVFPRDFRKERPCLNYHIKRCMGVCT-GKIKQDEYNSLIHSAIEYM 179 Query: 200 SGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-DLDVIGVA 258 + +L +M AS+NLEFE+AA++RD+I A+ ++ + Q + + D DV+ +A Sbjct: 180 QNGSKASVERLTEQMYEASENLEFEKAAKLRDRINAIEKMKDGQDIFSDKTYDFDVVALA 239 Query: 259 FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEIL 318 + +A + V+ R G++ ++F + + ++ F+ ++Y ++ +P +I Sbjct: 240 QNVELASIAVMCYRGGRITDKMNFF--IGDEYDPGQMRSDFLVEYYS--ARTDAIPKQIY 295 Query: 319 LDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQ 378 +D + D +L + S L G K+ V RG+ + LA+ NA+ L+ K+ + Sbjct: 296 IDKEMEDSAILEEYFSALCGHKVTVTVAQRGEGLSRVLLAKQNASEYLSMKVGRTVKEIN 355 Query: 379 RLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGD 437 L LA +L LP++ +E +DIS+ + V +V+ P +A YR++ I + + Sbjct: 356 ALEDLAKLLGLPKIPTVIESYDISNLGEDSRVGGMIVYRNGRPYKAGYRKFTIKNVIGQN 415 Query: 438 DYAAMNQVLRRRYGKAIDDS----KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 DYA M +VL+RR + +D +PD+IL+DGGKG + + V ++VS L Sbjct: 416 DYACMQEVLQRRIQRYLDGDESFAPLPDLILLDGGKGHVHAVQQVLDSMNVS-----IPL 470 Query: 494 LGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 G+ K + +GE + + ++ +I+DE H ++ ++ K Sbjct: 471 YGLVKDDKHRTRA----IAAQGEEIQINANRKLFSLMTNIQDEVHRFSLSFQQQTHKKKT 526 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 L I+G+G + L+K+ Q L++AS +EIA V + + A++I+ +K Sbjct: 527 YELELTKIKGIGEAKALALIKHFKTKQALKDASPDEIASVAKVKEEKAKEIYDFIKE 583 >UniRef50_A9NEZ8 Excinuclease ABC, subunit C n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ8_ACHLI Length = 577 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 199/608 (32%), Positives = 316/608 (51%), Gaps = 40/608 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 K L + ++PG Y M D G VIYVGKAK+LK R+SSYFR + KTE L+++I + Sbjct: 2 KEKLSILPTEPGCYMMLDQSGEVIYVGKAKNLKNRVSSYFRGA-HNAKTEKLISEISDFN 60 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 VT++E E+L+LE+N IK Y P YN+ L DDKSYP++ ++ + P L + R + K + Sbjct: 61 YIVTNSEQESLILEYNLIKKYAPLYNIRLIDDKSYPYLEITNEKDPMLVVSRYIEVDKTK 120 Query: 128 -YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 FGP+PN + RETL LLQ+++P+R+C S+PCL Y +G CLGPC V Sbjct: 121 TLFGPYPNSKSARETLKLLQRLYPLRRCN----PVDSKPCLYYHMGLCLGPCAHEKV--- 173 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +Y +E + FL G +VL +L RM+ AS++LEFE A RD I AV+ TEKQ ++ Sbjct: 174 DYKPNIERITRFLKGDTKEVLNELEERMKQASEDLEFERAVEYRDMILAVKDTTEKQIMT 233 Query: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D D I A++ + +L +RQG++L + + T+ E T++ +Y Sbjct: 234 LNDYKDRDFISFAYNEDDMAIQILMMRQGRILDTHKNV--ISYMTDPYETFLTYIKNYY- 290 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 LP E++ D + K L K V GD+ + + LA NA Sbjct: 291 ---DKFLLPDELVFDQQIPFKELQMYF-------KNKVVVPKIGDKKKLVDLAHKNALED 340 Query: 366 LTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 LT ++ + +++ AL + ++ +E FD +H G ++ +V+ Sbjct: 341 LTHYYKLYRAKEEKLGEQIEALEQIFD-KKISYIEVFDNAHLFGTAPISGMIVWKDYHFE 399 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFA 480 R YR++++ T DDY AM +VL RRY + + + K+PD+I +DGGKGQ++ A V Sbjct: 400 RKMYRKFHLKTTT-NDDYQAMKEVLYRRYQRLLVEKQKLPDLICVDGGKGQVSAAYEVIQ 458 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 ++ +LG+ K + + E L SP + + +E H Sbjct: 459 LFNL-----DIPILGLKKDKYHMLEG----YVIQNEVTILDKKSPLYQFLGQLSEEVHRF 509 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 I H+K + + TS L+ I G+GP R++ LL + ++NAS E++ + G+ + Sbjct: 510 TITFHQKTKNRKDYTSVLDNIPGLGPTRKKKLLASFKSIDDIKNASTEDLRSI-GLPDKV 568 Query: 601 AEKIFWSL 608 + I + Sbjct: 569 IKSIKEGI 576 >UniRef50_Q2GJJ1 UvrABC system protein C n=6 Tax=Anaplasma RepID=UVRC_ANAPZ Length = 614 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 217/620 (35%), Positives = 342/620 (55%), Gaps = 30/620 (4%) Query: 1 MSDQFDA--KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEA 58 ++D F A KA S PGVY+M+ ++YVGKAKDLKKRLSSY N S Sbjct: 8 LNDAFYALKKATCSVRKSVPGVYKMFGTEDRLLYVGKAKDLKKRLSSYLSINRMSVNVYT 67 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH 118 +V QI ++++TVT ETEALLLE IK +P+YN+++RDDK YP+I S +PR+ +H Sbjct: 68 MVKQIVRLEITVTENETEALLLEAKLIKSLKPKYNIIMRDDKFYPYILFSKHKYPRIVLH 127 Query: 119 RGAKHAKGEY---FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCL 175 R K ++G Y +GPF + R +A ++K F +R C ++ + R+RPC++Y+I C Sbjct: 128 RE-KRSEGRYTGLYGPFLSSVMTRHIIATIKKAFLLRSCPDNFFATRARPCIEYEIKNCS 186 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC++ ++EE+YA+ V+ L+G+ ++ +L M S N ++E A RD++ A Sbjct: 187 APCMQ-KITEEDYAKAVQMAHKALTGQSKEIQCELFEMMCRFSNNQDYESAIVCRDRLHA 245 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 ++ + E F + D+D I V + C+ V+F R G GS+ YF + G ++ Sbjct: 246 LKSMKECMGFQTGIHGDVDFIAVYKRQDLYCMQVVFFRDGVNYGSQPYFIESVGNASDAD 305 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLS-DKTLLADSLSELAGRKINVQTKPRGDRAR 353 +V F+ Q Y P + +D D +++ ++ +L R+++++ D + Sbjct: 306 IVNMFMLQIYND------FPSVVYVDLPSDYDTNIMSTAIKQLMKREVDIRLPATRDELK 359 Query: 354 YLKLARTNAATALTSKLSQ--QSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVAS 411 + LAR A AL ++ Q T + +LK PE R+E +D SH G Sbjct: 360 AMGLARNYAMEALNRRVRNTAQDTDLEEFATFFDLLKAPE--RIEIYDNSHISGTHPYGV 417 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQ 471 VV +G L+ EYR++ I +T GDD + M++V+ RR+ + D +PD ILIDGG+GQ Sbjct: 418 MVVCGKDGLLKKEYRKFKINTVTNGDDCSMMHEVISRRFKEIPD--VLPDFILIDGGRGQ 475 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 + + L + +AKG R AG E +F+ GE SL P S +H + Sbjct: 476 RSAVYGELSRLGI-------PFACIAKGPGRVAGTE-VFYFSNGEKLSLDPASKLMHFLC 527 Query: 532 HIRDESHDHAIGGHRKKR-AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 +RDE+H AI HRK R K++ ++ L I G+G + + +L Y G +Q +++A VEEI Sbjct: 528 RLRDEAHRFAITSHRKSRDGKLQFSTLLNDIPGIGKTKGKAILAYFGSIQAMKHARVEEI 587 Query: 591 AKVPGISQGLAEKIFWSLKH 610 +KVPGIS LA+++ LK Sbjct: 588 SKVPGISLKLAKRVADYLKE 607 >UniRef50_A4ECP7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECP7_9ACTN Length = 601 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 185/599 (30%), Positives = 295/599 (49%), Gaps = 48/599 (8%) Query: 43 LSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY 102 + Y +K ++ + D V TE EAL+LE N I Y P +NV L+DDKSY Sbjct: 1 MRQYVTLQDERQKIPLMMQLVASFDYIVVETEHEALVLERNLIGQYHPYFNVDLKDDKSY 60 Query: 103 PFIFLSG-DTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPI--------RQ 153 PFI ++ D P + R YFGP+ + A RET+ L+K+ PI R+ Sbjct: 61 PFIAITKSDLFPAIKYTRERHKPGTRYFGPYTDSRAARETIDTLRKVIPICSASCAEWRR 120 Query: 154 CENSVYRNRS-------------RPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLS 200 C V ++ RPC Y +GR G CV G +S +YA+ V+ V FLS Sbjct: 121 CRRIVESHKGEEDIVNMICAQNGRPCFDYHVGRGPGACV-GAISPADYAKNVKRVERFLS 179 Query: 201 GKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT-EKQFVSNTGDDLDVIGVAF 259 G V+ +L S M A++ L+FE AAR++ +++ +R + +Q V + D+DVIG Sbjct: 180 GHRKDVVDELTSEMTEAAETLDFERAARVKRRLEVIRGLDDRQQVVFPSSVDIDVIGFYR 239 Query: 260 DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILL 319 + ++ V +R+G+ + + + + E+ F+ ++Y + + +P EI L Sbjct: 240 EETISAACVFVVREGRTVRTCEFILDKGLDVDEEELQSGFLKRYYDETAD---IPAEINL 296 Query: 320 DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQR 379 L D L + L+ R ++ RG++ R L +A NA AL + + R Sbjct: 297 SVELEDAEALGEWLAGKRERSCHLHRPQRGEKHRLLDMASKNARHALMRYMMRTGYADDR 356 Query: 380 LTALASVLKL-----PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIT-GI 433 L+ R+ECFDIS G TVAS VVF + +YRR+ I + Sbjct: 357 TNQALLELESALALPAPPLRIECFDISTLHGTFTVASMVVFTNGRADKGQYRRFKIQAEL 416 Query: 434 TPGDDYAAMNQVLRRRY--GKAIDD--SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 +D+ +M++VL RRY + D+ PD++++DGGK QL A L + Sbjct: 417 DEANDFVSMSEVLGRRYAPERMADERFGSRPDLLVVDGGKPQLTAAIKQLEALGL----- 471 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 + G+AK E +F + LP S +L++I+ +RDESH AI HR+ R Sbjct: 472 DIPVCGLAKAD------EEVFVPWDETPVVLPTGSASLYLIKQVRDESHRFAITFHRELR 525 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 K S L+ + GVGP R++ ++++ G ++ LR AS +EIA+V G+ +A+ + +L Sbjct: 526 DKAMTVSVLDDVPGVGPTRKRAIMRHFGSMKRLRAASEQEIAEVRGVPADVAKAVHEAL 584 >UniRef50_C7N8N1 Excinuclease ABC, C subunit n=12 Tax=Fusobacteriaceae RepID=C7N8N1_LEPBD Length = 594 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 202/615 (32%), Positives = 324/615 (52%), Gaps = 28/615 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M ++ + K + + PGVY M + G +IYVGKAK+L+ R+ SYF + N ++KT L Sbjct: 1 MEEEIKSPIKYKDIPTHPGVYLMKNERGKIIYVGKAKNLQNRVKSYFMNINSHNQKTMEL 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V I+ I+ + +E EAL+LE+N IK +P+YN+LL+D+K+YP+I + + P++ + R Sbjct: 61 VKNIKDIEFFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFTKEKFPKVEIVR 120 Query: 120 GAKH--AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 K EYFGP+P G + L KIFP+R C S+ + ++PCL+Y + C P Sbjct: 121 STKKLNENAEYFGPYPMGIFF--AMKTLLKIFPMRDCNRSMDKI-TKPCLKYYMKTCPAP 177 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C + E+EY+ V+ + FL G D+V+ L SRM+ S +EFE A R+++ ++ Sbjct: 178 CKYKDI-EDEYSTNVKNFKNFLKGHSDKVIEMLESRMKKFSDEMEFERAINEREKLAVLK 236 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 R+ E Q + + + D DV + VL IR+GKV+ + E + Sbjct: 237 RMLETQIIEYSKEIDEDVFVFEEKRENVFLCVLNIREGKVINKNDIIISLERSQE-ENLF 295 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRK-INVQTKP-RGDRARY 354 E + +Y + R +P I+ D LL +++ K I + R + Sbjct: 296 ERLITSYY----EKRNIPKHIICDERFMSSELLIKEWAKIEKHKEIKLHFPKINSRRLQL 351 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 L++ N + ++ V + L L L+L + R+ECFDIS+ G+ VA+ Sbjct: 352 LEMGYLNLREEVDKYYRKRRMVQEGLRNLKKELRLKSLPYRIECFDISNIQGKDAVAAMT 411 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 V EYR + IT DD+ M + L RRY K I++ K+P++ILIDGGKGQL Sbjct: 412 VALDGETTPKEYRHFKITVKDTPDDFLMMREALTRRYSK-IENDKMPNLILIDGGKGQLG 470 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A +V +L H ++G+AK E +F E E + L ++Q + Sbjct: 471 VAVDVLEKLG---KIEHTDVIGIAKRE------EEIFKSYESEPYLFEKTDETLKILQRL 521 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H I HRK R+K S+L+ I G+GPKR++ L+K G ++ +RNA++EE+ +V Sbjct: 522 RDEAHRFGITHHRKLRSKRNVKSALDDITGIGPKRKKELIKKFGLIKNIRNATLEELMEV 581 Query: 594 PGISQGLAEKIFWSL 608 + + +A I +L Sbjct: 582 --VPENIAISIKENL 594 >UniRef50_C7LYI3 Excinuclease ABC, C subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYI3_ACIFD Length = 620 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 207/621 (33%), Positives = 319/621 (51%), Gaps = 31/621 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M D+ D L + PG Y+ D VIYVGKA++L+ R+ SYF+ S KT A+ Sbjct: 1 MMDRPD----LAAIPEAPGSYQFRDGEDRVIYVGKARNLRARVGSYFQDPRQLSPKTRAM 56 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 +A ++ V +E +ALLLE++ IK + PRYN+ LRDDKSYP I ++ G+ PR ++ Sbjct: 57 LAVASRLTWIVVPSEQDALLLEYSLIKEHHPRYNIRLRDDKSYPMIAVTVGERWPRAMIY 116 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQC---ENSVYRNRSRPCLQYQIGRCL 175 RG + YFGP+ + A RE L LL++ P+R C + + + RPCL + IGRC+ Sbjct: 117 RGKRRRGARYFGPYADAGAAREVLELLRRALPLRTCSPAKLAQHERAGRPCLYFDIGRCV 176 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC+ G V E Y V+ V FL G+ ++ L + M A+ LEFEEAAR+RD++ A Sbjct: 177 GPCI-GAVDEATYRGLVDEVTGFLEGRAGSLVDALETEMHAAASRLEFEEAARLRDRLSA 235 Query: 236 VRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + V E+Q V+ + DLD IGV D + V+ +R G+++G + G L + Sbjct: 236 IEAVLERQSVALGHERDLDAIGVHRDELDLYLEVVRVRHGRIVGVGGARAERDSGAMLFD 295 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 + V +Y Q +P I+ +++ D+L+ L GR + V T R + A Sbjct: 296 ELLDLVRSYYDD--QAIDVPPRIVARVEVAEAREATDALTSLLGRPVRVVTPYRRELAVL 353 Query: 355 LKLARTNA----ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 +++A NA A + + +T + LT L + L R+ECFD+SH G V Sbjct: 354 VEIAERNAALAHQRARRERATDLATRSRGLTELGELAGLGAPPVRIECFDMSHLQGRSYV 413 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD--SKIPDVILIDG 467 S VV + YR + + + DD AM +VL RR + D PD+I++DG Sbjct: 414 GSMVVMEDGLMRHGAYRHFRV-SVPHNDDVGAMREVLSRRLDRLDDRRFGGRPDLIVLDG 472 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G QL + E ++ ++ +AK E L+ E +P + AL Sbjct: 473 GAPQLNGVLRLLEERGMAGT---VPVVALAK------SFEELYVPDRSEPVRVPRGTLAL 523 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +++Q +RDE+H AI HR++R S+LE+I G+GP RR LL G + + AS Sbjct: 524 YLLQQLRDEAHRFAITYHRRRRQLDAERSTLESIPGLGPARRARLLAEFGSIYEIAEASE 583 Query: 588 EEIAKVPGISQGLAEKIFWSL 608 E+ + G+ +A + L Sbjct: 584 AELVRA-GVPARVASAVRERL 603 >UniRef50_C2MAD2 Excinuclease ABC subunit C n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MAD2_9PORP Length = 602 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 197/617 (31%), Positives = 320/617 (51%), Gaps = 40/617 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + KA L T+ +PG Y+ + GT+IYVGKAK+L+ R+SSYF ++ + KT LV++I+Q Sbjct: 5 EIKAILPTIPQEPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKNPKTTRLVSEIRQ 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ V +TE EAL+LE+N IK + P+YN+LL+DDKSYP I ++ + PR+ R + K Sbjct: 65 LEYFVVNTEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVITDEPFPRIFATRK-EVGK 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-----CLQYQIGRCLGPCVE 180 G+YFGP+PN + L+ ++ +R C ++ R CLQY I +C GPC + Sbjct: 124 GDYFGPYPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPC-Q 182 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G VS EEY V+ R L G+ ++ + + M S+ LEFE A + R I+ +RR + Sbjct: 183 GFVSAEEYDHSVQLARRILKGEISILIEEEVEEMNRMSERLEFERAEQHRQNIEVLRRYS 242 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 K V+ + DV D V ++ +R G V+ + + K + S+++ + Sbjct: 243 GKHVVAPNIREADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLAYLI 302 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 + + + E++L E + RG++ L LA+ Sbjct: 303 EEL---RQRFGSTAREVILAEP-----------GEWESDSYRITVPQRGEKKHLLDLAQV 348 Query: 361 NAATALTSKLSQQSTVH------QRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCV 413 N + +Q ++ + LT + L + + R MECFD S+ G VA+CV Sbjct: 349 NVSGYRWDCYKRQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACV 408 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQL 472 VF P ++EYR++++ + DDY M +++ RRY + +D+ + +PD+I+IDGGKGQL Sbjct: 409 VFKNGKPAKSEYRKFHVKTVVGADDYRTMREIIYRRYRRMLDEGQSLPDLIIIDGGKGQL 468 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A + ELD+ + + G+A E L+ E E L S L V+ H Sbjct: 469 HVACDTLKELDI---YDKVCVFGLA------ERFEELYRPGESEPLVLDRRSETLKVVCH 519 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H I HR R+K + S L+ I G+G + ++ L++ Q + AS E+ + Sbjct: 520 IRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLMRAFKTPQRVVKASRAELIE 579 Query: 593 VPGISQGLAEKIFWSLK 609 G S+G K++ L Sbjct: 580 TLGASKGS--KLYNHLH 594 >UniRef50_D2MQ80 Excinuclease ABC, C subunit n=7 Tax=Bacteria RepID=D2MQ80_9FIRM Length = 591 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 195/611 (31%), Positives = 302/611 (49%), Gaps = 38/611 (6%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 +A L + +PG Y+M + G +IYVGKAKDL R++ YF KT LV+ I Sbjct: 6 IEAKLAELPHEPGSYQMKNKYGEIIYVGKAKDLHNRVNQYFVGT-HDFKTTKLVSNIDDF 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK- 125 D VT +E EAL+LE N IK Y+P+YN+ DD SYP+I L+ + +PRL + R K K Sbjct: 65 DFIVTASEKEALILEINLIKKYRPKYNIQFIDDSSYPYIKLTKEKYPRLLIARDTKKDKK 124 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGPFP+ A + T +LQ ++P R+C + CL Y +G+CLGPC E ++ Sbjct: 125 ARYFGPFPDVTAAKNTCKILQSLYPFRRCTTMP----KKLCLYYHLGQCLGPC-EFEINP 179 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-- 243 + Y E V+ FL G +V L ++M A++N +E+A + ++++ + Q Sbjct: 180 KVYDDMCEGVQRFLKGDSKEVEENLYTKMMVAAENRLYEQAQEYKVMLESIHAIVRHQQN 239 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + D D D G + +RQG +L F P + E E+F+ Q+ Sbjct: 240 IEKDNRGDRDAFAYVVDRGYIAIAGFLVRQGIILNKE--FRLRPLYGDAQEAFESFLIQY 297 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y R L+ D L + L I + RG + R + + NA Sbjct: 298 YQDHPAARE-----LVLSKEMDIQALKEVLD------IPIFQPQRGYKVRLIDMCLHNAQ 346 Query: 364 TALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANG 419 L K Q+S + + L+ + ++ R+E FD SHT G TVASCVV++ Sbjct: 347 QQLDLKFKSVNRQESMRQEAVKDLSKLAG-KDMNRIELFDNSHTSGSFTVASCVVYEDGQ 405 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 R YR++ + D +M +VL RRY + + + + PD IL+DGG Q+ AK + Sbjct: 406 EDRKSYRKFKLHT--QNSDVDSMKEVLYRRYFRLLKEGSRFPDGILVDGGWLQIEAAKEI 463 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 +L + + +++G+ K A + EG + DS ++ ++DE H Sbjct: 464 LGQLGL---LDRIVVMGLVKDAHHNTRA---LMDGEGRELEVSKDSALFFLLTRMQDEVH 517 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR+ R+K + S L+ I G+G KR+++L K G L+NAS EEIA++ I Sbjct: 518 RVAISYHRQLRSKAQTKSVLDEIAGIGLKRKKLLWKAFGNFSHLKNASEEEIARI--IPA 575 Query: 599 GLAEKIFWSLK 609 A ++ SL Sbjct: 576 EPAHLLYKSLH 586 >UniRef50_Q8REL0 UvrABC system protein C n=10 Tax=Bacteria RepID=UVRC_FUSNN Length = 589 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 200/604 (33%), Positives = 312/604 (51%), Gaps = 28/604 (4%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 + GVY M VIYVGKAK+LK R+SSYF S KT LV I+ I+ +T+ Sbjct: 7 DIPESSGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH---AKGEYF 129 TE +ALLLE+N IK Y P+YN+LL+D+K+YPFI +S + + + R K GEYF Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKISKEDFSSIKIVRTTKALDIKSGEYF 125 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+P Y +L K+F IR C + + RPCL+Y + C GPCV + +EEY Sbjct: 126 GPYP--YGAWRLKNILMKLFKIRDCNRDMKKTSPRPCLKYYMKSCTGPCVYKDI-KEEYN 182 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + VE ++ L G +++ +L + M ASQ+++FE++ R+QI+ ++ + Q + Sbjct: 183 KDVENLKQVLKGNTSKLINELTALMNKASQDMDFEKSIIYREQIKELKSIASSQIIQYER 242 Query: 250 D-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 + D D+ A + VL +R GK+LG S + + + E +Y Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYY---- 297 Query: 309 QMRTLPGEILLDFNLSDK-TLLADSLSELAGRKINVQTKP-RGDRARYLKLARTNAATAL 366 LP ++LD ++ +++ +L+ +K + R L +A N + Sbjct: 298 SKHILPKSLVLDAEYENELSVVVKALTIEDSKKKEFHFPKIKSRRKELLDMAYKNLERDI 357 Query: 367 TSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEY 425 S S++ T+ + + L +L L R +ECFDIS+ G+ VAS V R EY Sbjct: 358 ESYFSKKDTIEKGIKDLHDILGLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEY 417 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 R++ I DD++ M +V+ RRY K + D + PDVILIDGG GQ+ A V L Sbjct: 418 RKFKIRCKDTPDDFSMMREVIERRYSK-LPDIEFPDVILIDGGLGQINSAGEVLKRLG-- 474 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 + LL +A E ++ E + L D AL + Q +RDE+H I H Sbjct: 475 -KIHLSELLSLA------ERNEEIYKYGESIPYVLSKDMEALKIFQRVRDEAHRFGITYH 527 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 RK R+K +S L+ I+G+G RR+ LL G + ++ AS+EE+ ++ I + +A +I Sbjct: 528 RKIRSKRIISSELDKIDGIGEVRRRKLLTKFGSISAIKKASIEELKEI--IPEKVALEIK 585 Query: 606 WSLK 609 ++ Sbjct: 586 NKIR 589 >UniRef50_A8GP33 UvrABC system protein C n=14 Tax=Rickettsia RepID=UVRC_RICAH Length = 651 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 224/651 (34%), Positives = 348/651 (53%), Gaps = 60/651 (9%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K+ L + GVYRM+D VIYVGKAK+LKKRL+ Y +S+L + KT ++A + Sbjct: 11 IKSKLIDAPERCGVYRMFDVNKQVIYVGKAKNLKKRLTHYIKSDLDN-KTLRMIANTCFL 69 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 + ++T++E EALLLE IK +QP++N+LL+DDKS+PFI L D P+L +RG Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGKTLND 129 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G+ FGPF + V TL LQKIF +R C ++ + +R+RPC+QY+I RC PCV G +++ Sbjct: 130 GKCFGPFASATEVNTTLTELQKIFKLRSCTDNYFNSRTRPCMQYEIKRCYAPCV-GKINK 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y V V+ FL G+ + L +ME S + FEEAA IRD+I+A+ V K V Sbjct: 189 EDYRDLVAQVKDFLQGRTKALQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKSCV 248 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 S+ D D+I V G CV V R + G+ YFP + EV+E F+ QFY Sbjct: 249 SDIVKDADIIVVVEKNGHYCVEVFLYRAWQACGNIPYFPTSTENSTKEEVLEYFLLQFY- 307 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAG-RKINVQTKPRGDRARYLKLARTNAAT 364 Q + +P EI+++ ++DK + +++ ++ K+N+ G +A+ ++ A A Sbjct: 308 ---QKQQVPAEIIINHEINDKENMIEAIKKINNITKLNIIIPISGGKAKLVQNAAIKALF 364 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L L + + + + ++ L E+ R+E +D SH G+ V VV G + Sbjct: 365 SLEQYLKKFVKNQEIMLEIKALFGLHEIPERIEIYDNSHIQGKFAVGVVVVVGKAGFDKK 424 Query: 424 EYRRYNITGITP--------------------------------------------GDDY 439 EYR ++++ GDDY Sbjct: 425 EYRVFSLSSCDASLSSHAYPFSPRNLIAGSSTLTNPMDPVVRSREDDTSSTHNYAVGDDY 484 Query: 440 AAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK 498 + QVL RR + ++ K+P +++IDGGKG L K V + + H + ++K Sbjct: 485 EMLRQVLIRRLTRLKNEPHKLPSLMIIDGGKGHLGIVKEVMDKFAM-----HIPFVCMSK 539 Query: 499 GADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSL 558 G DR AG+E F E F+L + P + +Q +RDE+H+ AI HR R++ SSL Sbjct: 540 GVDRNAGIEQ-FHMTGKEVFTLDTNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKISSL 598 Query: 559 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + IEGVG R++ LL Y G + + +A+++E+ KV GI++ LA IF +L Sbjct: 599 DNIEGVGETRKKALLHYFGSYKAVCDATIDELTKVNGINKSLAAMIFRTLH 649 >UniRef50_D2RB48 Excinuclease ABC, C subunit n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RB48_GARVA Length = 780 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 196/721 (27%), Positives = 329/721 (45%), Gaps = 130/721 (18%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQI 66 + + + +QPGVY+ D G VIYVGKAK+L+ RL++YF+ +T+++V + + Sbjct: 66 RPASRDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQSMVLTARSL 125 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKHAK 125 + TV TE EAL LE+ +IK + PR+NV+ RDDK+YP++ +S + PR+ + R Sbjct: 126 EWTVVSTEFEALTLEYTWIKAFNPRFNVVFRDDKTYPYVAVSLEETFPRVWITRNRSARH 185 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRCLGPCVEGL 182 YFGP+ + +R +L L K FPIR C +SV+ RPCL IG+C PC+ G Sbjct: 186 ARYFGPYAKVWPLRHSLDSLLKTFPIRTCSSSVFSKAHRTGRPCLFASIGKCSAPCI-GN 244 Query: 183 VSEEEYAQQVEYVRLFLSGK-DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + E+ + VE+V L+G + ++Q+ + M+ AS+ LEFE AA++RD+I + + + Sbjct: 245 IDPSEHRKMVEHVVGILTGSVGESYISQIKNEMKEASEELEFERAAKLRDEIAVLNTILQ 304 Query: 242 KQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 + V D + DV G D A +HV F+R G + G +++ + S+++ + Sbjct: 305 QNAVVFDNDVEADVFGFCGDELEASIHVFFVRAGMIRGEKNWSVERNEHISDSDLIADLL 364 Query: 301 GQFYLQGSQM----------------------RTLPGEILLDF-------NLSDKTLLAD 331 + Y + Q + +++L ++T D Sbjct: 365 TRVYAEYEQNYTQNHEDTISIKKVRDAVSSTQQATATDVILRAQATKTRRERQERTGRED 424 Query: 332 SLSELAGRKINVQTKP----------------------------RGDRARYLKLARTNAA 363 L+ ++ + RG++ + A NA+ Sbjct: 425 LLAPISPVPREIIVPIKISDERKQELELWLSNIRGSQVSIRVAERGEKRALMDRANDNAS 484 Query: 364 TALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGEQTVASCVVFDA 417 L +++ + + +A L + + R+EC+DIS+T G VAS VVF+ Sbjct: 485 QELKRIKSSRINSIDMRTEAMNEIAKALGMSKSPLRIECYDISNTVDGSYQVASMVVFED 544 Query: 418 NGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGK--AIDDSKI------------- 459 +EYR + + G DD +A+ + L RR+ ++++ Sbjct: 545 GVARPSEYRHFAVRGEHGDGKIDDLSAVYETLLRRFKHKDVYAENRLDASDSSDTSDTSD 604 Query: 460 -------------------------------PDVILIDGGKGQLAQAKNVFAELDVSWDK 488 P +I++DGGK Q AK + VS Sbjct: 605 SSDINICDANSISNKHFSGNSLTSARHFAYKPQLIIVDGGKEQAKAAKRAMRDAGVS--- 661 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 + G+AK LE ++ E S L+++Q RDESH AI HRK Sbjct: 662 -DITVCGLAKK------LEEVWLPDEDYPIIFKRSSEGLYLLQRARDESHRFAISYHRKL 714 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 R K S+ + I G+G R+ LL G ++ L+NAS+E++ KVPGI + A+ I+ +L Sbjct: 715 RRKGSLHSTFDAIPGIGAVYRKRLLASFGSIKSLKNASLEDLQKVPGIGENKAKAIYSAL 774 Query: 609 K 609 + Sbjct: 775 R 775 >UniRef50_C5CDH0 Excinuclease ABC, C subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CDH0_KOSOT Length = 574 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 205/605 (33%), Positives = 309/605 (51%), Gaps = 44/605 (7%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVAQIQQI 66 A ++ + +PG+Y + G +IY+GKAK L+KR+SSYFR++ + KT L +I + Sbjct: 7 AKVRELPEKPGIYLFKNKKGEIIYIGKAKKLRKRVSSYFRASTHEQNGKTRELYQEIDDL 66 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + V TE EALLLE N I ++P++NVLL+D K YP+IF+S D P +++ R + KG Sbjct: 67 EFIVVPTEKEALLLEANLIYQHKPKFNVLLKDSKRYPYIFISDDEFPYISITR-IRDRKG 125 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 Y+GP+ + VR L LLQ+IF +R C ++ + RPC Y + C P + G +S Sbjct: 126 FYYGPYTSITLVRNLLDLLQRIFKLRSCMDNRDCKKGRPCFLYHLKMCSAP-LAGEISHA 184 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV- 245 EY +QV FL GK V QL M+ ++NL+FE+A IRD + + R+ KQ V Sbjct: 185 EYQKQVRGFMDFLDGKTLDVRRQLERSMQRLAENLQFEKAKEIRDVLVSFDRLYSKQAVD 244 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + D I + V +L +R G +LG ++ ++ F+ QFY Sbjct: 245 VSESYTADFIVL----DSGIVTLLEVRGGLLLGKLTFDF-------PEGNLKDFIQQFYY 293 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + R P I+ N S+ +A+ + + R L +A N Sbjct: 294 GQNH-RKPPVLIVPGLNKSEIKEIAEDFEYIGN-------PRSEEEKRLLLIASDNTIEE 345 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKRM-ECFDISHTMGEQTVASCVVFDANGPLRAE 424 L +L V Q L +L L ++ R+ E DISHT G TVAS VVF P + Sbjct: 346 LRIRLK----VQQSLKMAKELLGLNKIPRIIEGVDISHTQGVYTVASVVVFRNGQPDKIS 401 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YRRY IT + +D+ A+ ++RRRY K PD++L+DGG QLA + EL + Sbjct: 402 YRRYRITELNEPNDFEALKILMRRRYSK----HPPPDLLLVDGGAPQLAAVRESLEELGL 457 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 +G+AK E + F L PD P L ++ IRDESH A+ Sbjct: 458 K----KIDFIGLAKEE------EEIVFPDNRGRLKLSPDHPVLRLLTTIRDESHRFAVNY 507 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 HR R + +TS L+ I G+GPKR++ L++ G + ++ AS EE+ KV ++ + E+I Sbjct: 508 HRVLRERKFSTSRLDDIPGIGPKRKRALVRAFGSVTNIKKASKEELMKVIK-NRKVVEQI 566 Query: 605 FWSLK 609 K Sbjct: 567 LAWTK 571 >UniRef50_C5NYN4 Excinuclease ABC subunit C n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYN4_9BACL Length = 582 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 181/610 (29%), Positives = 311/610 (50%), Gaps = 36/610 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + L+ + PG Y D G +IYVGKAK+LK R+ SYF ++KT+ LV++I+ Sbjct: 3 LTLQKKLELLPDNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQTLVSKIE 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 ++ + ++E EALLLE+N IK Y+P +N+ L+DDKSYP++ ++ + HPRL M R K Sbjct: 62 DLEYIIVNSEKEALLLENNLIKKYRPYFNIRLKDDKSYPYLMITKEEHPRLLMTRKYKKN 121 Query: 125 -KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K YFGP+ + + E +L KI+P+R+C RPC+ YQIG C+GPC + + Sbjct: 122 NKNIYFGPYVDIKSATEVKKILDKIYPLRKCN----PVEKRPCMYYQIGECIGPCAK-KI 176 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + ++Y Q+ ++ FL+G ++LT L S+++ +NLEFE A +I + I+++ + Q Sbjct: 177 TADDYKSQISKIKSFLTGNTKEILTDLQSKLQEHIKNLEFEAAGQIHNYIKSIEVSVQNQ 236 Query: 244 FV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V +T D D IG F+ C+ + R G ++ + + + E++ +++ Q Sbjct: 237 VVADSTNVDRDYIGFTFNNDYICIQIFLSRLGNIIERKVEYFNL--YDTPEEILYSYLLQ 294 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y + LP EI +D + LS++ K+ + RG+ + L + NA Sbjct: 295 YYA----LNKLPKEIYIDEVDDN------LLSDVVDCKVII--PKRGNHRKILDTVKENA 342 Query: 363 ATALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 L + L+ ++ + L +A L + + ++ FD S+ MG V+ V F Sbjct: 343 TYYLNNNLAIEELKERKLQVTLNNIAEKLGVNSINSIDAFDNSNIMGVDAVSVKVNFTNG 402 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 YR++ I +D M +VL R Y +++ ++++DGGK L A +V Sbjct: 403 KKNTYNYRKFKIDESMGINDVQTMKEVLYRNYKDRKTNTE---LLIVDGGKNHLNVAIDV 459 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 + D ++G+AK + E P S ++ I+DE H Sbjct: 460 VHN---TLDLKQIKIIGLAKNDKHIT---EYIITDDYEIIEFPKTSAEYLFLKQIQDEVH 513 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR + K SSL+ I+G+G R+ +LLK L+ ++NA E++ K+ GI + Sbjct: 514 RFAITYHRATKNKNMYKSSLDDIQGIGKVRKNLLLKSFSSLEEIKNAPDEKLLKL-GIPK 572 Query: 599 GLAEKIFWSL 608 + + + L Sbjct: 573 DVIKNLKKRL 582 >UniRef50_Q2Z008 Exconuclease ABC subunit C (Fragment) n=1 Tax=uncultured Chloroflexi bacterium RepID=Q2Z008_9CHLR Length = 500 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 177/510 (34%), Positives = 283/510 (55%), Gaps = 35/510 (6%) Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 Y+GP+ + +AV +TL +L++IFP C+ + +R CL Y I C PC+ G+ Sbjct: 3 DDGARYYGPYTSVWAVHQTLDVLRRIFPYLTCDREITGGDARACLYYDIKLCTAPCI-GM 61 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +++ Y Q ++ + FL G+ + ++T+L + M A++ L FE AA +RDQIQA+ RV EK Sbjct: 62 INQAGYRQMIDDLGQFLEGRTEPIVTRLRADMNQAAEALNFERAAALRDQIQAIERVVEK 121 Query: 243 Q-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q VS+ D DV+ +A G ACV V FIR GK++G + + + ++V+ F+ Sbjct: 122 QKVVSSDYIDSDVVAMARTDGEACVQVFFIRSGKLIGREYFLMEGAAESPDADVITGFLK 181 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAG-RKINVQTKPRGDRARYLKLART 360 QFY Q +P E+LL + + ++ + L+ G +K+ + G + +++A Sbjct: 182 QFYDQAPN---VPPEVLLPTEIEEMNIIREWLNSRRGGQKVELHIPRLGPQQELMQMAAE 238 Query: 361 NAATALTSKLSQQS----TVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVF 415 NA+ L++ +Q Q L L + L LPE R+EC+DIS+T G V S VVF Sbjct: 239 NASATLSALQAQWQADTHRQEQALAELQTALDLPEAPNRIECYDISNTQGTAAVGSMVVF 298 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IP 460 + P ++ YRR+NI ++ DD+A+M +VL RR+ + +P Sbjct: 299 EQGVPKKSLYRRFNIRSVSGPDDFASMEEVLTRRFSRWQATQDASQAPGKKPDPAFSLLP 358 Query: 461 DVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSL 520 D++L+DGGKGQL++A+ V +++ L +AK E LF + E L Sbjct: 359 DLLLVDGGKGQLSRAEAVLERFELTG---RFFLASLAKHN------EELFIPGQSESLLL 409 Query: 521 PPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 P S AL+++Q +RDE+H +AI HR++R K S L+T+ G+GP RR+ LL + GGLQ Sbjct: 410 PRHSQALYLVQRVRDEAHRYAITSHRQRRDKAGIASQLDTVPGIGPMRRKALLAHFGGLQ 469 Query: 581 GLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 +R AS EE+ +PGI+ LA+ I +L Sbjct: 470 QIRQASTEELLTIPGITIKLAQAIRETLGQ 499 >UniRef50_Q83NI9 UvrABC system protein C n=2 Tax=Tropheryma whipplei RepID=UVRC_TROW8 Length = 607 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 195/611 (31%), Positives = 309/611 (50%), Gaps = 36/611 (5%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 + +PGVYR D G ++YVGKAK+L+ RL SYF + R+ +++ +++ T Sbjct: 8 EIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVA 67 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGP 131 + EAL LE+++IK + P NV L+DDK+YPF+ ++ G+ PRL + R +FGP Sbjct: 68 DDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRRKIQ-YATHFGP 126 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCLGPCVEGLVSEEEY 188 +P + +RET++LL KIF IR C + Y+ PC + QI +C GPC + +Y Sbjct: 127 YPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSL-KTTHLQY 185 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-SN 247 ++++ + FL G+ +L L +M AS+N E+EEAA +RD+IQA + V + V + Sbjct: 186 QKRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLD 245 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D I V D +A V + G++ S+ + SE++ + Q Y Sbjct: 246 ETVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVY--- 302 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSEL---AGRKINVQTKPRGDRARYLKLARTNAAT 364 +LP I+L S + L+ L++ +I + P R L+ + NA + Sbjct: 303 -DKLSLPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERRLLETVKDNALS 361 Query: 365 ALTSKLSQQST----VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 L ++S+ H+ L L L L + R+ECFDISH G T S VVF+ Sbjct: 362 ELERHRLRRSSDYTERHRSLFELQKYLNLNSLPVRIECFDISHLSGTNTSGSMVVFENGE 421 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK----AIDDSKIPDVILIDGGKGQLAQA 475 P ++ YR +NI I +D A+M ++ RR A D P +++IDGGK QL+ A Sbjct: 422 PKKSAYRHFNIH-IDQNNDTASMFSLICRRLRSLESVAQDSPDYPHLMIIDGGKPQLSAA 480 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 E+ + + ++K LE L+ LPP+S +L ++Q IRD Sbjct: 481 VGALQEVGLK-----IPVFALSK------RLEELWSPGVKTSLILPPNSESLFLLQKIRD 529 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 ESH A+ + +R + TS L I G+G ++ LL+ +R AS+E+I+ +PG Sbjct: 530 ESHRFALK-QQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISALPG 588 Query: 596 ISQGLAEKIFW 606 AEKI Sbjct: 589 FGVKTAEKIKE 599 >UniRef50_C3XLG8 Excinuclease abc subunit c n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLG8_9HELI Length = 618 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 193/621 (31%), Positives = 313/621 (50%), Gaps = 38/621 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-------SNLASRKTEA 58 + LK + + GVY +D G ++YVGKAK+LK R+ SYFR + S + Sbjct: 11 NLLETLKKIPNSSGVYHYFDTQGKLLYVGKAKNLKHRIKSYFRFTPNLAPAPNLSPRITQ 70 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V+QI + V E +AL+LE++ IK +P+YNVLLRDDK+YP++ + + PR+ + Sbjct: 71 MVSQIAHLRYIVVENENDALILENSLIKQLKPKYNVLLRDDKTYPYLCVDLQEDFPRILL 130 Query: 118 HRGAKHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 R +G YFGPF +G R+ L + +IFP+ Q E+ +N + CL YQI RCL Sbjct: 131 TRKIFKKQGLRYFGPFSSG--ARDLLDSIYEIFPLAQKES--CKNGKKACLFYQIHRCLA 186 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PC EG +S ++YA+ ++ + ++L L +M SQNL FEEA +RD+I + Sbjct: 187 PC-EGKISTKDYAKILQNALECVE-NPKKILAPLEQKMLQLSQNLRFEEALILRDRIAKI 244 Query: 237 RRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 + +T V DLD+ + + A + F+R GK++ S + K G + + Sbjct: 245 KNLTPLSSVDFANLVDLDIFALVCEDKRAVLVKFFMRNGKIISSATQNLKSELGFDSLSI 304 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKT-LLADSLSELAGRKINVQTKPRGDRARY 354 + + Y + + +P +IL+ F+L + T L L E G+K+ + GD+ R Sbjct: 305 YKQALINHYS--NTLPLVPKQILIPFDLGESTQELEYFLQEKVGKKVQIHFPKSGDKKRL 362 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVV 414 +LA N L + + + L L + P R E FD SH G Q V + VV Sbjct: 363 CELAIQNGKEILRLEQNDNEEIFNALKTLFCLQNTPY--RFEVFDTSHHKGTQCVGAMVV 420 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQ 474 +D ++ YR Y + D+Y M ++L RR +S PD+ ++DGG GQ+ Sbjct: 421 YDGLDFIKESYRHYLL---EGKDEYTQMREMLTRRIQDFQKESP-PDLWVLDGGAGQINL 476 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGA-----DRKAGLETLFFEPEG-EGFSLPPDSPALH 528 AK + V+ + ++G+AK R G E + + L L Sbjct: 477 AKELLESAGVNLE-----VIGIAKEKIDSKTHRAKGGAKDILRDENLKEYRLSMSDKRLQ 531 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 +Q +RDE+H AI H+K++ K S L +I+G+G + LL Y G + + A ++ Sbjct: 532 FLQKLRDEAHRFAITFHQKQKQKTMQHSKLLSIKGIGKAIQNKLLAYFGSFEAIEKADLD 591 Query: 589 EIAKVPGISQGLAEKIFWSLK 609 E+ KV +S+ A+ +F +L+ Sbjct: 592 ELEKV--LSKTFAKSVFNALR 610 >UniRef50_C1SGC9 Excinuclease ABC, C subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC9_9BACT Length = 599 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 198/613 (32%), Positives = 316/613 (51%), Gaps = 29/613 (4%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQI 66 K LK + PG+Y G ++YVGKAK+L+ R+SSYF +T ++ + I Sbjct: 3 KPVLKEIPENPGIYLYLGKNGEILYVGKAKNLRNRVSSYFVDFESKPIRTRKMLQSARDI 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 VT +E EALLLE+N IK +PRYNV L+D KSYPFI ++ + +P+L + R + KG Sbjct: 63 RFVVTTSEAEALLLENNVIKTEKPRYNVRLKDSKSYPFILITEEDYPKLRITRES-GKKG 121 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 EYFGPF + ++R + L K+FP+R C +S +R + CL++QI +CLGPC E ++S+ Sbjct: 122 EYFGPFVDVGSLRSIVDELLKVFPLRSCGDSKFRE-GKLCLKFQIRKCLGPC-ENMISKN 179 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 Y Q VE +R F G D V + + M S ++ FEEAA +RD+++ + R+ KQ V Sbjct: 180 RYNQLVEQIREFFRGNVDTVKSHMEQEMMRLSDDMNFEEAAIMRDRLRGLSRLFTKQTVV 239 Query: 247 NTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 D +DV ++ + +FIR G+++GSR+ + S V+E+FV Q Y Sbjct: 240 MPDDTSSIDVFVPHSFENVSGITAMFIRGGRLIGSRTEILE--DDENPSGVIESFVLQMY 297 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 S +R P + + L D L ++L +LA +K+ + RG A KLA N Sbjct: 298 ---SVLRNYPQMVYIAG-LEDSGSLQEALEKLADKKLRFR--KRG-YAAVEKLALDNGRV 350 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 L++ S L ++ V R+EC DISH G TV +V +A+ Sbjct: 351 QTQLYLNKLSKRKDITEKLKKIIGAESVSRIECVDISHLGGSGTVGVSIVAVDGEFSKAQ 410 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIP-DVILIDGGKGQLAQAKNVFAELD 483 YR+Y I DD+ ++ ++ R++ + S+ P D+ ++DGG GQL A +E Sbjct: 411 YRKYRIRTAE-NDDFISIYELFSRKFENIQEGSEPPADLYIVDGGIGQLNSAMRAASEKG 469 Query: 484 VSWDKNHPLLLGVAKG-------ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 + + + ++KG ++ +E++ +L + P L IQ +RDE Sbjct: 470 YTAN-----FISISKGRSIKFMKDKQEQSIESVHIPGRKNPLNLKKNDPLLLFIQKVRDE 524 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 SH AI RK K S L +EGVG K + +L+ + ++ + ++I++ I Sbjct: 525 SHRFAIDYSRKLALKNFKKSPLLMLEGVGEKTVRKVLEVFPDIYERKDLTAKDISEYCSI 584 Query: 597 SQGLAEKIFWSLK 609 + A I +K Sbjct: 585 PEKTAAVIELFIK 597 >UniRef50_Q2FPC6 UvrABC system protein C n=16 Tax=Archaea RepID=UVRC_METHJ Length = 520 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 180/549 (32%), Positives = 274/549 (49%), Gaps = 38/549 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L T+ +PG Y+ D GT++YVGKAK+LKKR+SSYF+ + + + LV+ I+ IDV V Sbjct: 6 LTTIPEEPGCYQFKDETGTILYVGKAKNLKKRVSSYFQKKSITPRIDILVSLIRDIDVIV 65 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK-HAKGEYF 129 T +E EAL+LE+N IK YQP+YN+ L+D KSY FI +S D PR+ + R G + Sbjct: 66 TSSEVEALILENNLIKKYQPKYNIDLKDAKSYAFIQISNDPFPRIGIARDRTVKKTGTLY 125 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + + L +++ F +R C+ + R CL+ +G C PC G +SE EY Sbjct: 126 GPFVSAAERDQILKFVKQTFHLRTCK----KMTKRACLRSHLGTCAAPCT-GKISEPEYQ 180 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 V+ L GK ++ L MET + E+E+A IRD+I A+ ++E+Q+V Sbjct: 181 YLVKSADYLLKGKSQDLIYDLRKEMETFAAAEEYEKALVIRDRIAAIENLSERQYVQRQK 240 Query: 250 D-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D +I + + + +G + + E + ++ F+ Q+Y Sbjct: 241 KSDEHIINYLVSGDTVYLILFHVERGSLTSKEEFVFP-----ETEDFLDEFILQYYSS-- 293 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 P E++L + + L+ + G + + +G++ L LA N + Sbjct: 294 --TKPPNELILPSLPGSG--MEEYLTHIRGSHVTLTIPKQGEKKHLLDLAYKNLEVSFF- 348 Query: 369 KLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 T RL L L + +ECFDISH G TVAS V F P + YRR Sbjct: 349 ------TGKMRLAELGEALHMDTAPEVIECFDISHLRGTGTVASMVSFRDGKPDKRNYRR 402 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 Y I P DDYAAM +V++RRY + + + S +PD+I++DGG GQL A + EL + Sbjct: 403 YKINSAGPSDDYAAMAEVVKRRYSRLLREKSPMPDLIVVDGGPGQLKSAHAILEELSLP- 461 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 ++ +AK E ++ S+ SPA +IQ IRDE+H AI + Sbjct: 462 ----IPIISIAKRE------EEIYIPGRNTPLSIQKKSPASLLIQEIRDEAHRFAITYQK 511 Query: 547 KKRAKVKNT 555 K R K Sbjct: 512 KLRQKSIKE 520 >UniRef50_A9BGW2 UvrABC system protein C n=1 Tax=Petrotoga mobilis SJ95 RepID=UVRC_PETMO Length = 574 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 192/605 (31%), Positives = 321/605 (53%), Gaps = 41/605 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL--ASRKTEALVAQIQQ 65 ++ L + +PGVY + G IY+GKAK+LK R+SSYF + KT ++ + Sbjct: 4 RSILNNIPKKPGVYIFKNNKGDPIYIGKAKNLKNRVSSYFNKKNYIGNEKTYEMLEKATN 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D +T E +A +LE N I +++P+YN++L+D + YP+I ++ + P++ R K K Sbjct: 64 LDYIITSNENQAFILEANLIYIHKPKYNIMLKDTRVYPYILVTDEQFPKIKYIRTKKEEK 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G+++GP+ + V++ + +LQ ++ IR C+ + R +S+PC Y +GRC GPC V E Sbjct: 124 GKFYGPYSDVKFVKDVIEVLQSVYKIRSCDRDLGR-KSKPCFLYHLGRCYGPC-YKDVDE 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y + VE V+ LSG ++V L M ++ +E+AA++RD + + + E+ V Sbjct: 182 TVYQESVEKVKKVLSGDIEEVKNYLQKAMMDYAKIKNYEKAAQMRDTLFKLENLFEEVAV 241 Query: 246 S-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 G +LD+I VL +R+G ++ S+ + +E F+ Q+Y Sbjct: 242 EYKNGKNLDIIMYEPP----VYLVLIVRKGYLISKLSFTMEG--------TLEDFLYQYY 289 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + + P I +N + D L E ++I G ++ ++A TN Sbjct: 290 IV--RKNEPPSLISTLYNEEISPEILDFLKEKGLKRIE----KIGKSSKIYEMAYTN--- 340 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 L ++ +Q + L +L L E K +E DISH G TVAS V F+ P + Sbjct: 341 -LQEEIKRQKDLSFALKQAKEILSLKKEPKIIEGIDISHLQGLYTVASLVRFENGKPKKE 399 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 YR+Y + I DD+ ++ V++RRY K ++PD++ IDGGKGQ+ A E+ Sbjct: 400 GYRKYRLDDIKAPDDFESIRTVIKRRYQK----HELPDLLFIDGGKGQVNSAVEALKEIG 455 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 S ++G+AK +R + F + LP D P L ++ ++RDE+H AIG Sbjct: 456 YSLK--DVDVVGIAKEDER------IVFPGDIPDLHLPLDHPVLRLLIYVRDETHRFAIG 507 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 +R R+K + L+ I G+GPKR++ L+K+ GG+Q L AS+EEI+KV S+ +A++ Sbjct: 508 FNRSLRSKRFEKTKLDDIYGIGPKRKKELIKHFGGIQKLLEASIEEISKVVK-SEKIAKR 566 Query: 604 IFWSL 608 I SL Sbjct: 567 IKESL 571 >UniRef50_Q14NX3 Putative uvrc protein excinuclease abc subunit c n=1 Tax=Spiroplasma citri RepID=Q14NX3_SPICI Length = 593 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 181/617 (29%), Positives = 304/617 (49%), Gaps = 34/617 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 MS++ K ++ + ++PG Y Y+ V+YVGKAK+L+ R+SSYF + + KT LV Sbjct: 1 MSEKLSLKEQVEILPAKPGCYLFYNNYHQVLYVGKAKNLRSRVSSYFNK-VYNYKTTRLV 59 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 +I +++ +T TE EAL+LEHN IK Y+P+YN+LL DDK YP+I ++ + P+ R Sbjct: 60 QEIVRLETIITKTEKEALILEHNLIKQYKPKYNILLNDDKHYPYIVITKEKDPQYLYVRN 119 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 Y+GPFP G RE + +L++++P+R+C+ ++ +PCL Y I +C G CV+ Sbjct: 120 IHQKYARYYGPFPEGSHAREIIKVLERLYPLRRCKGNL----GKPCLYYHINQCSGACVK 175 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 VS + Y + ++ V F G + L RM A+ NL+FEEA +++ I+ + Sbjct: 176 -TVSPDYYIKMIKKVHSFFKGNFTETKKLLEKRMLQAADNLQFEEAHKLKLLIRNLDWTL 234 Query: 241 EKQFVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 Q V N DDLDVI + A + LF R GK+ + + + E+ Sbjct: 235 SSQTVEMLNQNDDLDVISLYQTAEHLVLTTLFYRAGKLSYKDYEYYHLDFAEDCQELYRL 294 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 ++ Y Q LP +I+++ ++ L + V +KLA Sbjct: 295 YLQNIY----QKNILPTKIIVNEIIALPELNLLFDN-------RVFHPKTPIEKTIMKLA 343 Query: 359 RTNAATALTSKLS---QQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVV 414 N+ + + ++ + L L +L L E+ +E DI++ E +V Sbjct: 344 TENSYESYVQYQTTAQRELNNAEVLKELQMLLDLSELPYLIEMIDIANINDEFVTGGVIV 403 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLA 473 + R +YR+YN+ I DD + V+ RRY K I ++ +P++I++DGG Q+ Sbjct: 404 YKNGRLSRNDYRKYNLE-IPDQDDTHRIAAVVTRRYQKVIQEEQALPNLIIMDGGIQQVN 462 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A+LD++ ++G+ K K + E L S + I Sbjct: 463 ACLKELAKLDLA-----IPVIGLVKNNQHKTDH---LLNLKKEKIYLDKSSRLFLFLTRI 514 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 +D+ H AI R+++ K TS LETI G G +R ++L + + ++ AS E+ +V Sbjct: 515 QDDVHHFAITSFRRRQTKALTTSILETIPGFGKQRIKLLNHHFESIGAIKKASDAELYQV 574 Query: 594 PGISQGLAEKIFWSLKH 610 S+ L E + L+H Sbjct: 575 LH-SKKLIENLRKFLEH 590 >UniRef50_Q8EWS6 UvrABC system protein C n=1 Tax=Mycoplasma penetrans RepID=UVRC_MYCPE Length = 589 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 178/612 (29%), Positives = 307/612 (50%), Gaps = 34/612 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M++Q K LK + +PG Y D G VIYVGKA DL R+ YF + KT+ L Sbjct: 1 MNEQ--IKDKLKKIPHKPGCYLWKDKNGIVIYVGKAVDLANRIKQYFLKDR-DLKTKKLA 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAM-HR 119 +I +D V + E E+LLLE+N I Y+P+YN+LLR+ ++P+I ++ + HPR+ H Sbjct: 58 NEICDVDYVVVNNENESLLLENNLIAKYKPKYNMLLRESNAFPYILVTKEEHPRILYSHD 117 Query: 120 GAKHAKGEYFGPFPNGYAVR-ETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 K KG Y+GPF N + E + +IFP+R+C + ++ C+ Y IG+CLGPC Sbjct: 118 STKKIKGTYYGPFANSNIKKYELYNFINRIFPLRKCN----KLPNKKCIYYDIGQCLGPC 173 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 ++ V+ ++Y ++ + F SGK + QL + A++ L FE++ + + + ++ Sbjct: 174 IK-KVTRQDYEPYLKEINDFFSGKSKSIDEQLEKKEIQAAEKLMFEDSQKYLELRKNLKM 232 Query: 239 VTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 +E+Q + + +D D+IG + + + G +L Y +EL E++ Sbjct: 233 FSERQDIIFSQKNDEDIIGFYCKENVISIVIFKYVNGSLLSK--YDLITVFYSELDEILL 290 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 T + ++Y + + LP + L + L++SL KI +G + + Sbjct: 291 TLIYEYYSKIA--IELPKTVYLSLSDEKLKTLSESL------KIKFLNPSKGVKKDVMDT 342 Query: 358 ARTNAATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 A NA + +K +S Q+ L L +L + ++ RME FD S+ V + V Sbjct: 343 AFNNAVEIMKNKYLQLISNQNRELNSLEELQKLLDIKDLYRMEIFDNSNIFNTNKVGAMV 402 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQL 472 V++ + EYR++NI DY M +V+ RRY +IP++I++DGGK Q+ Sbjct: 403 VYENGVKNKNEYRKFNIKDEDANSDYDYMKEVIYRRYKNNTASFGEIPNLIIVDGGKPQV 462 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A L++ + ++G+AK K + + L S + + Sbjct: 463 KAALESLKFLELD---SIIPVIGLAKDDKHKTDR---IVKWDFSEIKLDKKSDLYFFLLN 516 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 I+DE H AI +R K++K +SL I+ +G R + LL+ L ++ ASVEE+++ Sbjct: 517 IQDEVHRFAISFYRNKKSKSLFENSLYKIKNLGKTRIEKLLEKYETLDKIKEASVEELSQ 576 Query: 593 VPGISQGLAEKI 604 + I +A++I Sbjct: 577 IVPI--EVAKEI 586 >UniRef50_D2RRA5 Excinuclease ABC, C subunit n=2 Tax=Halobacteriaceae RepID=D2RRA5_9EURY Length = 597 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 308/629 (48%), Gaps = 64/629 (10%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + K++ +PGVY+ A GT +YVGKA DL+ R+ SY ++ + + +V + +I Sbjct: 6 VRERAKSLPREPGVYQFR-AEGTTLYVGKAVDLRSRVRSY--ADPRTARIRRMVDRADEI 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 ++ VT TET+ALLLE N IK +QPRYNV L+DDKSYP + L+ PR+ + R Sbjct: 63 EIAVTDTETQALLLEANLIKRHQPRYNVRLKDDKSYPMVQLTDHEAPRIEITRDPDGEAQ 122 Query: 127 -------------EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR 173 FGPF N V + L++ + +R C + Y R RPCL Y++G Sbjct: 123 GASSASGGAASGPTVFGPFTNKGQVETVVKALRETYGVRGCSDHKYSGRDRPCLDYEMGL 182 Query: 174 CLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQI 233 C PC + E YAQ V V F G+ + L ME A+++ FE AA +RD++ Sbjct: 183 CTAPCTR-EIDLESYAQDVTAVERFFEGETGILADPLRREMEAAAEDQNFERAANLRDRL 241 Query: 234 QAVRRVTEK--QFVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG 289 + V + + V + GD+ DV+GVA + A V L +GK++ + + P Sbjct: 242 ETVETFHGEGGEAVQSVGDERAVDVLGVAIEGEDATVARLRAERGKLVDRDRHTLEAPAA 301 Query: 290 TELS-------EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKIN 342 V+ F+ Q+Y + R LP +LL D + A L ++ Sbjct: 302 EGAGTEEGGVPAVLAAFIVQYYAE----RDLPDALLLPERHGDDEV-AAWLE---AEGVS 353 Query: 343 VQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISH 402 V+ G A+ + LA NA + + LA L++ +R+E FD+SH Sbjct: 354 VRVPGAGREAKLVDLALKNARRNVGGR--------DECGMLADALEIDAARRVEGFDVSH 405 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID---DSKI 459 G+ V S V F +A+YRR +T DDY M +L R +A++ D Sbjct: 406 AQGKSAVGSDVTFVDGSAEKADYRRKKLT--DQNDDYDNMRALLEWRASRAVEGRDDRPD 463 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++LIDGG+GQL A++ A + + +AK +R + F S Sbjct: 464 PDLLLIDGGEGQLEAARDALAAVG-----WDVPAVALAKAEERVVTPDRTF--------S 510 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 P D+P LH++Q +RDE+H A+ H+ R + + L+ + GVGP+ R+ LL G + Sbjct: 511 WPSDAPHLHLLQRVRDEAHRFAVQYHQTVRDE--VKTVLDDVPGVGPETRKRLLGRFGSV 568 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + +R ASV++I V GI + AE I L Sbjct: 569 ENVREASVDDIESVEGIGEKTAETIKSRL 597 >UniRef50_Q255T2 UvrABC system protein C n=17 Tax=Chlamydiaceae RepID=UVRC_CHLFF Length = 604 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 194/604 (32%), Positives = 314/604 (51%), Gaps = 27/604 (4%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVTV 70 K + PGVY M D+ G V+Y+GKAK+L+ R+++YF+ SR + L+ + I+ + Sbjct: 9 KIIPPSPGVYLMKDSSGEVLYIGKAKNLRNRITTYFQKQGDSRERIPFLMKKTTDIETIL 68 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG---AKHAKG 126 ETEALLLE+N IK Y P+YNVLL+DDK++ + +S PR+ R K Sbjct: 69 VSNETEALLLENNLIKKYHPKYNVLLKDDKTFFCLAISLSHPWPRIDAIRTKAVTSSKKQ 128 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 FGP+ + A + L ++ + FP+R C N + R RPC+ Y++ RCL PCV S+E Sbjct: 129 IVFGPYVSAEACQTLLEVIGQWFPLRTCSNREFSTRKRPCILYEMKRCLAPCV-NFCSQE 187 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 EYA+ +E LFL G+ +++ +L +E ASQ +FE+A ++ +++ KQ V Sbjct: 188 EYAETLEKAVLFLKGQVSEIIQKLEKSIEKASQEQKFEQAGMYYRTLKLIQQAMVKQHVE 247 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 ++D IG+ + VL IR GK+LG+R + P E S+++ +F+ Q+Y Sbjct: 248 KFHFQNIDAIGLYRKHQETVITVLTIRSGKLLGARHF-PFSENAQEDSDLLSSFILQYYA 306 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 +P EIL F+L+ L E R +++ G L LA+ NA Sbjct: 307 NQPH---IPKEILTPFSLNIPDLPHLLNKEAPPR---IRSPKTGYGKELLNLAKNNAEMH 360 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 + + ++ + + P R+EC+D +H G V +V++ N Y Sbjct: 361 AQTSVQSSVLPYEEMKKILKTQDYPY--RIECYDNAHLQGSHAVGVYIVYENNALSPKNY 418 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 R + I+ +D AA ++VL RR+ S +PD+I+IDGG+ Q +QAK +L+++ Sbjct: 419 RTFAISSSAH-NDLAAFHEVLSRRFSST--SSPLPDMIVIDGGRLQYSQAKKTLKKLNLT 475 Query: 486 WDKNHPLLLGVAKGADRKAG---LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 ++ +AK A +G E LF + +G LPP S L Q +RDE+H AI Sbjct: 476 G----IQIVSIAKEASNHSGSLRHEKLFCDIFPQGIQLPPTSKLLQFFQKLRDEAHRFAI 531 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRKKR++ E I G+G +R+ LLK + + AS E+ +PG+++ + Sbjct: 532 SKHRKKRSRDLLL-PQEKIAGIGEVKRKRLLKKFKSWKQVMQASQGELETIPGLTKKDIK 590 Query: 603 KIFW 606 ++ Sbjct: 591 QLLA 594 >UniRef50_C8P3R6 Excinuclease ABC, C subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R6_ERYRH Length = 590 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 177/616 (28%), Positives = 299/616 (48%), Gaps = 52/616 (8%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + LK + +PG Y M + G +IYVGKAK LK R+SSYF KT +V QI Sbjct: 5 TIEEKLKRLPMEPGCYLMKNKNGEIIYVGKAKKLKNRVSSYFTGA-HDHKTTRMVRQIDD 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 + +T TE E+L+LE N IK ++P++N++ DDKSYP++ + + P + + R K +K Sbjct: 64 FEFIITSTEKESLILEINLIKEHRPQFNIIFMDDKSYPYLKIPREGKPEVLVARDRKQSK 123 Query: 126 G-EYFGPFPNGYAVRETLALLQKIFP----IRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 YFGP+P+ A R+ LL P + ++Y +R +Y Sbjct: 124 QFHYFGPYPDATAARDMARLLNDSVPTGDTLLPNTLAIYSAFNRTGKRY----------- 172 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + EE + V L+G +L +M ASQ+L FE A ++++ A+ + Sbjct: 173 ---TPEELNVWRQNVMSILNGNIKPFKDELERKMLEASQSLNFELAQVYKEKLHALDYIG 229 Query: 241 EKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +KQ V + + D+ A+ G + LF+R G++L RS + E + +F Sbjct: 230 DKQQVQFSLNERFDLFHFAYYQGYIAIVGLFVRGGRLL-ERSMAVEAC-MEEPLDAFVSF 287 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY + + +P I + ++ + L ++ G ++ V RG + L++ + Sbjct: 288 IAQFY----ENQPVPKTIYVPDLVNAEE-----LGDVLGAEVKV--PLRGKKKTLLEITQ 336 Query: 360 TNAATALTSKLS----QQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVV 414 NA L + S +Q + L L++ L + + R+E FD SH G V++CVV Sbjct: 337 KNAQQQLDDQFSILRERQQFKDEALRDLSAALGMSSIIHRIEVFDNSHISGAFAVSACVV 396 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLA 473 +D P + +YRRY + DD A+M +VL RRY + + +S +PD+IL+DGGK QL Sbjct: 397 YDDGEPNKNQYRRYKLH--QGNDDVASMKEVLYRRYFRLMRESKPMPDLILVDGGKPQLN 454 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A V ++L++ + + K + +G ++ S + + + Sbjct: 455 AALEVLSDLELDLR-----VCSLVKDDRHRTHA---LMREDGTLITINKTSSLFNFLMQM 506 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 +DE H I HR R K S L+ + G+G R++ L K G L+ +R AS+E + V Sbjct: 507 QDEVHRFVITYHRNLRKKAMTRSILDEVSGLGKVRQKELYKKFGSLKNIRAASLETLQTV 566 Query: 594 PGISQGLAEKIFWSLK 609 + + +A ++ L Sbjct: 567 --LPEDVAGDLYDILH 580 >UniRef50_D1AXF7 Excinuclease ABC, C subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXF7_STRM9 Length = 588 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 176/593 (29%), Positives = 307/593 (51%), Gaps = 30/593 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 +K + + PGVY M D VIYVGKAK+LK R+SSYF + +S KT L+ I+ I+ + Sbjct: 4 IKNIPTNPGVYMMKDINDKVIYVGKAKNLKNRVSSYFNNPKSSMKTFELIKHIKDIEFFL 63 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH----AKG 126 ++E EAL+LE+N IK Y P+YN+LL+D+K+YP++ ++ + P++++ R KH + Sbjct: 64 CNSELEALILENNLIKKYLPKYNILLKDNKTYPYLKITTEKIPQISVVRSRKHLEESTEA 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQY-QIGRCLGPCVEGLVS 184 YFGP+P + ++E + LL F ++ +Y + L+Y + + L E + Sbjct: 124 YYFGPYP--FNMKEMIKLLLSAFDMQYFNIDMYNKKIIGNNLRYNNLNKEL--YFENVED 179 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E +Y + + + FL KD ++ +L ++M S+NL++E+A +R++I+ + + + Q Sbjct: 180 ENKYIENSKAMINFLKNKDVSIIDKLHNQMIEYSENLDYEKALIMRNRIEKLNALIKTQL 239 Query: 245 VS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + + D DV + + +L IR GK++G + ++ E ++ E + Sbjct: 240 IEHSQQVDEDVFVLTNIGNNIFMCILNIRDGKIIGKNN--IRIDNKYEEQDIFEDLFLSY 297 Query: 304 YLQGSQMRTLPGEILLDFNL-SDKTLLADSLSELAGRKINVQTK-PRGDRARYLKLARTN 361 Y + +P I+++ S+ +L S + + + + R L+L + N Sbjct: 298 Y----DNKKIPKNIIIENKYKSNIDILEKYFSTEKNKLVKIHAPIIKSRRLSLLELGKKN 353 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGP 420 L + + + + L L +VL L ++ + +ECFDIS+ G+ V++ V Sbjct: 354 LNYYLDEYMRTEKAISKGLIDLKNVLNLKKLPKIIECFDISNIQGKDAVSAMSVTVNGKA 413 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 YR + IT DD+ M + L RRY K ++ ++PDVILIDGGKGQL A +V Sbjct: 414 DNKRYRHFKITVKDTPDDFMMMRETLMRRYSK-LEIDELPDVILIDGGKGQLGVAVDVLK 472 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 EL ++ +AK E +F E + + AL ++ RDE H Sbjct: 473 ELG---KFEFLDIISIAKKE------ELIFKAEESVPYRFDKNDEALKILIRTRDEVHRF 523 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 I HRK R+K S L+ I G+GPKR++ L+ G ++ + AS +E+ ++ Sbjct: 524 GITYHRKLRSKRNIKSVLDEIRGIGPKRKKELILKFGSIKNILEASEKELLEI 576 >UniRef50_B9LUM9 UvrABC system protein C n=9 Tax=Halobacteriaceae RepID=UVRC_HALLT Length = 592 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 196/625 (31%), Positives = 310/625 (49%), Gaps = 61/625 (9%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + + ++PGVY+ AG T +YVGKA +L+ R+ SY ++ S + +V + +I Sbjct: 6 VRERAADLPTEPGVYQFR-AGETTLYVGKAVNLRNRVRSY--ADPRSGRIRGMVGRADRI 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT TET+ALLLE N IK +PRYNV L+DDKSYP + ++ PR+ + R + Sbjct: 63 EFAVTDTETQALLLEANLIKRLRPRYNVRLKDDKSYPLVAITDHPVPRIEVTRDPEE-GA 121 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +GPF + V + ++ + +R C + Y NR RPCL Y++G C PC G + E Sbjct: 122 VAYGPFTSKGRVETVVKAIRDEYRLRGCSDHKYANRDRPCLDYEMGICSAPCT-GEIDPE 180 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK--QF 244 YA+ V R F G+ + L RME A++N EFE AA +RD+++AV + + Sbjct: 181 SYAEDVAAARRFFEGETGVLADPLRRRMEAAAENAEFERAANLRDRLEAVEAFHGEGGEA 240 Query: 245 VSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV---------------- 286 VS+ DD DV+ A + A V L +G+++ + Sbjct: 241 VSDHSDDRTVDVLAAAVEGDTARVARLHSERGQLVDRSRHRLDAAAVGDDGEGDEDGFAD 300 Query: 287 PGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 P + V+ F+ Q+Y + R P ILL SD ++ D L ++V+ Sbjct: 301 PDANTPAAVLSAFLTQYYAE----REFPDAILLAERPSDPDVI-DWLE---AEGVSVRVP 352 Query: 347 PRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGE 406 G A+ ++LA NA ++ + AL L + R+E FD+SH G Sbjct: 353 GAGREAKLVELALKNA--------RKRGGREDPVGALGERLGIDRPARIEGFDVSHAQGT 404 Query: 407 QTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI---DDSKIPDVI 463 V S V F ++YRR +T DDYA M +++R R +A+ DD PD++ Sbjct: 405 AVVGSDVCFVDGSAETSDYRRKKLT--DRNDDYANMRELVRWRAERAVAGEDDRPDPDLL 462 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 LIDGG GQL A++ AE ++ +AK E L P G P D Sbjct: 463 LIDGGGGQLGAARDALAETG-----WDVPVVALAK-------AEELVVTPTGT-RRWPDD 509 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 +P LH++Q +RDE+H A+ H+ R + + L+ + GVGP+ R+ LL+ G ++ +R Sbjct: 510 APELHLLQRVRDEAHRFAVSYHQTVRDE--VKTVLDDVPGVGPQTRRRLLRRFGSVESVR 567 Query: 584 NASVEEIAKVPGISQGLAEKIFWSL 608 +AS++++ V G+ A+ + L Sbjct: 568 DASLDDLTDVDGVGDATADTLRERL 592 >UniRef50_A8F4P7 UvrABC system protein C n=6 Tax=Thermotogaceae RepID=UVRC_THELT Length = 558 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 188/608 (30%), Positives = 298/608 (49%), Gaps = 54/608 (8%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVAQ 62 D K PGVY Y IYVGKAK L+ RL SYF + S+K +A+V + Sbjct: 1 MDLLHKAKLAPLLPGVYIFYGKNKEYIYVGKAKRLRNRLLSYFNRSNGKYSKKIQAIVNE 60 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 +++D V E EALLLE N I ++P+YNV+L+D + YP+I ++ + P + + R + Sbjct: 61 AEELDYIVVSNEREALLLEANLIFNHKPKYNVMLKDAEFYPYIEITKELFPAVQIVR-IR 119 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 GEYFGP+ + V++ + LQ+++ R C + ++ ++PC+++ + RC PC L Sbjct: 120 STGGEYFGPYTDVKFVKDLIDCLQQVYQFRTCRRDMSKS-TKPCMEFYMHRCAAPCTGDL 178 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + ++ +R L+G + L + +M+ ++ ++FE AA+ RD + V ++ Sbjct: 179 EPDSYINSSIQPLRRVLNGDISETLDLIEEKMKKHAKMMDFENAAKYRDLLVKFENVMQR 238 Query: 243 Q-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V +LDVIG F A VL IR G V+G SY +E F+ Sbjct: 239 QGVVLEQWRNLDVIG-RFKNSYA---VLRIRGGHVVGKLSYELDSTK-------LEDFIF 287 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 +Y+ G LP ++L+ N++ I L AR N Sbjct: 288 HYYMVG--KNELPEAVILERNINFDAE------------IYFGRPRDKLEEELLHKAREN 333 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 A ++ L + VL L ++E FD+SH G+ TVAS VVF P Sbjct: 334 AK----NQAYTSGLRKDLLNKMVKVLNLNRYPMKIEGFDVSHLHGKLTVASVVVFFDGLP 389 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + EYR Y DD+ + ++++RRY K ++PD+I +DGG GQ+ Sbjct: 390 RKNEYRHYRFNS-DRIDDFLTLKELVKRRYSK----HELPDMIFVDGGTGQINAVVEALM 444 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 E+ D ++G+AK + LP DSP L + IRDE+H Sbjct: 445 EIGKECD-----VVGLAKQNE--------IVCTRFGELILPFDSPILRTLVRIRDEAHRF 491 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A HRK R K +S L+ I G+GPKR++ L++ G ++ +R+A+++EIA+V G S+ L Sbjct: 492 ANSFHRKLRRKSALSSILDEIPGIGPKRKKKLIEAFGSVKNIRSATLQEIAEVLG-SRKL 550 Query: 601 AEKIFWSL 608 A +I L Sbjct: 551 AAEILSRL 558 >UniRef50_A5M6P1 Excinuclease ABC subunit C n=1 Tax=Streptococcus pneumoniae SP14-BS69 RepID=A5M6P1_STRPN Length = 553 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 174/471 (36%), Positives = 261/471 (55%), Gaps = 27/471 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K+ L+ + + PG Y D GT+IYVGKAK+L+ R+ SYFR + KTEALV++I Sbjct: 5 IKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGS-HDTKTEALVSEIVDF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT + EALLLE N IK +P+YN++L+DDKSYPFI ++ + +PRL + R K G Sbjct: 64 EFIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGG 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG--PCVEGLVS 184 YFGP+P+ A E LL +IFP R+C N S+ C Y IG+C+ C + + Sbjct: 124 LYFGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEI- 178 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 + + V FL G+D++++ +L +M A+Q +EFE AA RD IQA+ + KQ Sbjct: 179 --YFKSMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQR 236 Query: 245 VSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V + DV G D G CV V F+RQGK++ P + E T+VGQF Sbjct: 237 VMAKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNL--FPYFNDPDEDFLTYVGQF 294 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y + S + +P E+L+ ++ ++ + A S + RG++ + + LA NA Sbjct: 295 YQEKSHL--VPNEVLIPQDIDEEAVKALVDS-------KILKPQRGEKKQLVNLAIKNAR 345 Query: 364 TALTSKL----SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANG 419 +L K + L +L++P R+E FD S+ MG V++ VVF Sbjct: 346 VSLEQKFNLLEKSVEKTQGAIENLGRLLQIPTPVRIESFDNSNIMGTSPVSAMVVFVNGK 405 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGK 469 P + +YR+Y I + DDYA+M +V+RRRYG+ ++ PD+I+IDGGK Sbjct: 406 PSKKDYRKYKIKTVVGPDDYASMREVIRRRYGRVQREALTPPDLIVIDGGK 456 >UniRef50_C0QPW8 Excinuclease ABC subunit C n=5 Tax=Aquificales RepID=C0QPW8_PERMH Length = 580 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 171/604 (28%), Positives = 285/604 (47%), Gaps = 38/604 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 D K + PGVY G IY+GKAK++K RL + K + + + + Sbjct: 12 DLKNLIDEAPQSPGVYLFKGKKGEYIYIGKAKNIKNRLKGHLNQYRIDPKEKKIFDESSK 71 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I+ +T ++ EA +LE+ IK Y+P+YNV L+ YP + ++ D +P + + R + Sbjct: 72 IEWIITKSDYEAFVLENELIKQYKPKYNVRLKSGSGYPMLVITDDEYPTVVISRKFGEIE 131 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GEYFGPF R L+ K+F +R C R C Y +G C PCV +S+ Sbjct: 132 GEYFGPFLPARTARAMKDLIHKLFRLRTC--DPLPKRDIVCFDYHLGLCSAPCV-NKISK 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 ++Y V+ + FLSG + + +L R+E L FE+A+ +RDQI A+ + KQ V Sbjct: 189 KDYNFDVKAAKAFLSGDVKKFIYRLYDRLEEYKNKLNFEKASVVRDQILAMENLISKQEV 248 Query: 246 SN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 ++ D+ + V+++ +R +++G + G + E+ + + +Y Sbjct: 249 LGLPVNEADIFYFSGKD----VYLIVVRGSRIVGKE-FIQIKQEGIQDFEI--SVISNYY 301 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 ++G +P ++ + SD L LSE G + + + N + Sbjct: 302 IRG---NFIPEVVISNRKFSDHKNLKRWLSEKKGSDVRLLFDIPDE---IKGFIDRNIGS 355 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 S L + +R+E FDIS G+ TV S VV++ + E Sbjct: 356 VDLSDLKEI---------FKRTFGFDLPERIEGFDISTLFGDFTVGSAVVWENGKMNKRE 406 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YRR+ I + DDYA++ ++L RR+ K + P ++LIDGGKG L Q + V L + Sbjct: 407 YRRFKIKTVDGIDDYASLRELLFRRFRKYKEMDNPPRLVLIDGGKGHLKQGEIVRDALGI 466 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 + + +AK E + + +G+ L P L + IRDE+H A+ Sbjct: 467 KNLR----IFSLAKK-------EEILYTDDGKSVYLYNYQPLLKLFTTIRDEAHRFALSY 515 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 +RK R + L+ IEGVG KR+++L + + + ASVEE+ K+ GI + +A+ I Sbjct: 516 NRKLRERDTLKELLDKIEGVGKKRKEILYRTYKTVDRIAQASVEELKKL-GIPEKVAQNI 574 Query: 605 FWSL 608 L Sbjct: 575 KKYL 578 >UniRef50_A4FBL9 UvrABC system protein C n=26 Tax=Actinomycetales RepID=UVRC_SACEN Length = 717 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 179/497 (36%), Positives = 261/497 (52%), Gaps = 24/497 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + T+ PGVYR +DA G VIYVGKAK L+ RLSSYF + +T + Sbjct: 1 MADPSTYRPAPGTIPDAPGVYRFHDAEGRVIYVGKAKSLRSRLSSYFADLSGLHPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V + TV TE EAL LE+++IK Y PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VTTATGVRWTVVGTEVEALQLEYSWIKEYDPRFNVRYRDDKSYPVLAVTLHEDFPRLYVT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL +L ++FP R C V++ RPCL IG+C Sbjct: 121 RGPRRKGVRYFGPYAHAWAIRETLDMLLRVFPARTCSAGVFKRHSQIGRPCLLGYIGKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V +E+ + VE F +G+ D ++ +L M AS+ LEFE AAR+RD ++A Sbjct: 181 APCV-GRVDADEHRRIVEDFCDFFAGRTDTLIRKLDREMRQASEELEFERAARLRDDLEA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DVI A D A V V IR G+V G R + T + Sbjct: 240 LRRAMEKQAVVLGDGTDADVIAFADDELAAAVQVFHIRGGRVRGQRGWVIDKVEETGTAA 299 Query: 295 VVETFVGQFYLQGSQM--------RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 + E F+ QFY + + + +P E+L+ + + + LS L G ++ V+ Sbjct: 300 LAERFLTQFYGEQAALAEQADAGGTPVPREVLVPELPPECEAITEWLSGLRGGRVAVRVP 359 Query: 347 PRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEVK-RMECFDIS 401 RGD+ ++ NA A T ++ + L L L L R+EC D+S Sbjct: 360 QRGDKRALMETVERNAKEAFTQYKLRRAGDLTARSAALQELQDALGLDTAPLRIECIDVS 419 Query: 402 HTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPD 461 H G VAS VVF+ P ++EYRR+ + G D ++ +V+RRR+ + + ++ P Sbjct: 420 HVQGTDVVASLVVFEDGVPRKSEYRRFAVREGAEGGDVGSIAEVVRRRFARYLKETAPPQ 479 Query: 462 VILIDGGKGQLAQAKNV 478 +GG G V Sbjct: 480 ----EGGNGSAGATAAV 492 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 10/155 (6%) Query: 451 GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLF 510 G+ + P++++IDGG Q A + EL ++ ++G+AK LE ++ Sbjct: 552 GRPRKFAYPPNLLVIDGGAPQANAAADALTELGIT----DVAVIGIAK------RLEEVW 601 Query: 511 FEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQ 570 E E LP S AL+++Q +RD +HD AI HR+KR+K +S+L++I G+G RR Sbjct: 602 LPDEAEPVILPRTSEALYLLQRVRDAAHDFAIRYHRQKRSKRMKSSTLDSIPGLGEARRT 661 Query: 571 MLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 LLK+ G L+ LR A+VEEI+ VPG Q AE + Sbjct: 662 ALLKHFGSLRRLRQATVEEISAVPGFGQRTAETVH 696 >UniRef50_Q72IF0 UvrABC system protein C n=5 Tax=Thermaceae RepID=UVRC_THET2 Length = 630 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 205/537 (38%), Positives = 302/537 (56%), Gaps = 25/537 (4%) Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D T E EALLLE N IK ++P YNVLL+DDK YPF+ L+ + P L + R + Sbjct: 97 LDFIATRDEVEALLLEANLIKAHRPLYNVLLKDDKHYPFLKLTNEPFPTLLVVRRVEEDG 156 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 +Y+GPFP A+R L+ ++FP+R+ + R PCL Y +GRCL PCV G Sbjct: 157 AKYYGPFPEAGALRRIKTLIDRLFPLRKNSGYPMKRRRYPCLNYSMGRCLAPCV-GKADP 215 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV--TEKQ 243 E Y + V V L G+ D +L +L ++M A++ LEFE AA IRDQ++A+R T++Q Sbjct: 216 EAYQEVVRQVEAVLEGRVDGLLQELEAKMREAARRLEFERAAEIRDQMEALRAFFSTDQQ 275 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 DLD +G+A +A V + +R G++LG S + T+ E++ F+ Sbjct: 276 AFDPEMGDLDFLGMARSGALAVVQLYQVRSGRILGRISRVVEKEEATD-EEILWAFLRDH 334 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 YL+ S + L F L D LA+ L AGRK+ ++ +G++AR L+LA NA Sbjct: 335 YLEASPLPPLVLL---PFPLEDLESLAELLKRRAGRKVELRVPKKGEKARLLELAERNAR 391 Query: 364 TALTS--KLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGP 420 AL + KL ++ H L AL +L LP R+E +DISH G+ V S VF+ P Sbjct: 392 LALETELKLRERRGEHPALKALQDLLGLPARPWRLEGYDISHLQGQARVFSIAVFEGGRP 451 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 R EYRR + DDYAAM + + RRY ++ D +PD++LIDGG GQ+ A Sbjct: 452 KRQEYRRMRLK--AGNDDYAAMEEGVFRRYTGSLKDLPLPDLLLIDGGVGQVRAAARALE 509 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + + L+G+AKG E + PEG LP PAL ++ H+RDE+H + Sbjct: 510 KAGLRL-----PLVGLAKG-------EEVLVTPEGRELRLPLTHPALQLLIHLRDEAHQN 557 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 + HRK+R++ L+ I G+G KRR++LL+ GGL+ L+ A +EE+A++PG+S Sbjct: 558 GLRYHRKRRSEELFR-VLQGIPGIGEKRRRLLLERYGGLRALKEAPLEELARLPGMS 613 >UniRef50_B7J223 UvrABC system protein C n=22 Tax=Borrelia RepID=UVRC_BORBZ Length = 603 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 178/599 (29%), Positives = 328/599 (54%), Gaps = 27/599 (4%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 + + G Y+M + ++Y+GKAK+L+ R+ SYF S K + L+ ++ I+V T+ Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEK-NSHKIKILMKNVKSIEVITTN 72 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPF 132 +E EALLLE N IK ++P YNV L+D K YP + ++ + +PR+ R + K EYFGPF Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRITHEKYPRIFKTRKIINDKSEYFGPF 132 Query: 133 PNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQV 192 N + + L + K F IR+C+ + + PCL Y +G+CLG C + + E+EY +++ Sbjct: 133 TNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENL-EKEYQKEL 187 Query: 193 EYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-D 251 + + L+G ++ +Q+ +++ A Q +FE A ++++ ++ + + Q V+ T + + Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 252 LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMR 311 +D + V + + VL R GK++ + F + + +E++ F+ Q+Y + Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESI--CKENELILQFLIQYYTSINM-- 303 Query: 312 TLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLS 371 +P +I + D + ++E+ K + K + + +++A +NA +L + Sbjct: 304 IVPDKIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREYEN 363 Query: 372 QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIT 431 + + + L + + KLP++ +E FDI+H G++TVAS V F P + YR Y + Sbjct: 364 KSTKALESLKIVLEMDKLPKI--IEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLN 421 Query: 432 GITPG--DDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDK 488 + G DD+ A+ +V+ RRY + I+++ ++P++ILIDGGKGQL A ++ L + + Sbjct: 422 SLLKGEIDDFKAIKEVISRRYSEIINNNLELPNLILIDGGKGQLNAALSILKGLKI---E 478 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 N + +AK ET+F +G +LP PAL ++Q++RDE+H A G ++K+ Sbjct: 479 NKVKVCSLAKKQ------ETIFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKR 532 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 R K+ I G+G K Q +LK +G + + S EI++ ++ LA++I Sbjct: 533 REKITL--LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAKRIKEF 589 >UniRef50_UPI0001977D11 excinuclease ABC subunit C n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001977D11 Length = 627 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 303/611 (49%), Gaps = 49/611 (8%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--------SNLASRKTEALVAQ 62 L+ + +QPG+Y+ +D ++YVGKAK+LK R+ SYF S++ +V+Q Sbjct: 22 LQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQRIALMVSQ 81 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGA 121 + +I +T ++ +AL+LE++ IK +P+YN+LLRDDK+YP+I++ + T PR + R A Sbjct: 82 VAKIHTLLTQSQEDALILENSLIKSLKPKYNILLRDDKTYPYIYIDTSATFPRFEITRKA 141 Query: 122 KHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 +K EYFGPF +G RE L L P+ Q ++ + + C+ +QI +C PC E Sbjct: 142 LQSKHIEYFGPFVSG--ARELLDSLYDALPLVQKKSCL--KGKKACIFHQIHKCPAPC-E 196 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 +S+ +YA+ + + F+ ++ L S+M+ S NL+FEEAA+IRD+IQ ++ + Sbjct: 197 NKISQSQYAEYITQAKAFID-DRKGLIEILESKMQILSHNLQFEEAAKIRDRIQKLKTLK 255 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSR-SYFPKVPGGTELSEVVETF 299 + + D D+ + + +LFIR G+++ S S+ + L+++ Sbjct: 256 TQSIIDIMSGDYDIFLLDSAGQNHILMMLFIRNGRIVSSDFSFIHQEIHSQNLAQLYTQA 315 Query: 300 VGQFYLQGSQMRTLPGEILLDF----NLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + Y + + P EIL+ + +K L L + + +G + L Sbjct: 316 LLNHY--KTPLPLPPKEILIPHFDFQDKDEKDDLQKILQAQTQSHLKITQPQKGTKYNLL 373 Query: 356 KLARTNAATALTSKLSQQSTVHQ---RLTALASVLKLPEVK-RMECFDISHTMGEQTVAS 411 +LA+ NA LT +Q L AL + L +V R+E FD SH G V Sbjct: 374 QLAKKNAQEILTLHTKEQKNAQNENTTLYALKDLCNLSQVPYRIEIFDTSHHSGSHNVGG 433 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQ 471 VV++ +R+ YRR+ + D+Y+ M+++L RR K + + PD+ L+DGGK Q Sbjct: 434 MVVYENGEFIRSAYRRFELHS---SDEYSQMSEMLTRRAKKF-ESNPPPDLWLLDGGKAQ 489 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAK-----GADRKAGLETLFFEPEGEGFSLPPDSPA 526 + A ++ + + D ++ +AK A R G + F L + Sbjct: 490 INLALDILKSVGANVD-----IIAIAKMKYNAKAYRAKGNALDILRTQNAEFKLSTNDKR 544 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNT------SSLETIEGVGPKRRQMLLKYMGGLQ 580 L Q +RDE H +AI HR K+ K + S +++ + + LL Y G Sbjct: 545 LQFCQKLRDEVHRYAITYHRNKKQKDIHKIQIQKGSDMDS--SYSKAQIKQLLDYFGSFH 602 Query: 581 GLRNASVEEIA 591 +NA E+I Sbjct: 603 AFQNAPKEQIE 613 >UniRef50_A9A4M1 Excinuclease ABC, C subunit n=2 Tax=Thaumarchaeota RepID=A9A4M1_NITMS Length = 528 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 165/550 (30%), Positives = 269/550 (48%), Gaps = 40/550 (7%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 T+ + PG+Y M D+ GT+IY+GKAK+LKKR+ SYF N + KT+ LV I I+ +T Sbjct: 9 TIPTDPGIYLMKDSDGTIIYIGKAKNLKKRVKSYFLKNQ-NYKTQKLVQNISDIEFVLTD 67 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH----AKGEY 128 E+EA LLE N IK Y+PR+N+ L+D + Y ++ +S + +PRL + R + KG+ Sbjct: 68 NESEAFLLESNMIKKYRPRFNIELKDQQRYTYLRISDEKYPRLLVARRTRDGKFLGKGKT 127 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF G + T+ L+K F IR C+ + CL+Y +G C GPC +++ Y Sbjct: 128 FGPFTQGSSKLLTIGALRKAFQIRICKTLP----KKVCLEYHLGNCEGPCEFND-AQDRY 182 Query: 189 AQQVEYVRLFLSGKD--DQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 + V + L GK+ +L M A++ +FE A IRD + + + KQ + Sbjct: 183 PKHVAALEEVLKGKNQTKIFTKKLEEEMHQAAELQQFERAKDIRDTLIRLGSLQTKQKME 242 Query: 247 N-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D + G+ A V + G + S +F + G F+ Q+Y Sbjct: 243 YVENSDEEYFGIGIQEQSATVMNFRMINGVIRDSDKFFFDLVGDNS----FSNFLYQYY- 297 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 +P I++ ++ LL LSE AG + + T +G + + L N Sbjct: 298 ---STHKIPKYIIVSELPENQKLLESLLSEQAGFSVKISTPTKGKKKDIMNLILKN---- 350 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAE 424 KL L L +L LP + +ECFDIS+ + V S F P ++ Sbjct: 351 --IKLIHSKGGEPGLVELKDILHLPVIPNVIECFDISNHGEDFAVGSMAQFVNGKPNKSG 408 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELD 483 YR++ I ++ DD+A + +V++RRY + ++++ ++PD+I+IDGGKGQL A L Sbjct: 409 YRKFKIKTVSGRDDFAMIGEVIKRRYYRLLEENSELPDLIVIDGGKGQLNAATKSLQSLG 468 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 + + +AK E ++ ++ + P+L ++QH RDE+H + Sbjct: 469 LKL-----PCISLAKEN------EEIYLPKTKNPVTIAKNKPSLQILQHARDETHRFGVA 517 Query: 544 GHRKKRAKVK 553 +R R Sbjct: 518 YNRTIRKNQI 527 >UniRef50_A8ESX8 UvrABC system protein C n=26 Tax=Epsilonproteobacteria RepID=UVRC_ARCB4 Length = 616 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 180/634 (28%), Positives = 321/634 (50%), Gaps = 49/634 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-------SNLASRKTE 57 + + L+ + + GVY+ +D G ++Y+GKAK LK R+ SYF+ ++ S + Sbjct: 1 MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIY 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLA 116 ++++++ + V E +AL+LE++ IK +P+YN+LLRDDK+YP+IF+ + PRL Sbjct: 61 KMISEVESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLD 120 Query: 117 MHRGAKHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCL 175 + R + +K +YFGP+ G R+ L + +I P+ Q ++ V + CL YQI +CL Sbjct: 121 ITRRIQKSKSIKYFGPYSTG--ARDMLDSIYEIVPLVQKKSCV--KGKKACLFYQIQKCL 176 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC E +S+EEYA+ VE ++ K ++++L +M S + FEEA +RD+I+ Sbjct: 177 APC-ENKISKEEYAKIVENALEYIYNKTK-LISKLNEKMLQYSNDFRFEEAMTLRDRIKT 234 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL-- 292 + + K + T +D+D+ + + A + +F+R GK+ S F K+ E Sbjct: 235 IEKSQIKSDIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFE 294 Query: 293 ---SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 E E + +Y +++ LP EIL+ L L + L +KI + + Sbjct: 295 FDYQEAYERAIINYYD--NEIPLLPKEILIAHELEITNELEEFLHTRFNKKIKLINPKKD 352 Query: 350 DRARYLKLARTNAATALTSKLSQ-QSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQT 408 + + +A N L + S+ Q+++++ L L ++ LP + +E FD SH MG+ T Sbjct: 353 KKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYL--IESFDNSHMMGQAT 410 Query: 409 VASCVVFDA--NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILID 466 V + +V++ N + +R YN+ D+Y+ M ++L RR + + PD+ +ID Sbjct: 411 VGAMIVWNESLNTFDKKAFRHYNLES---KDEYSQMKEMLIRRIESF-EKNPAPDLWIID 466 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGA-----DRKAGLETLFF-----EPEGE 516 GG+ L A ++ + V+ D ++ +AK R G E + Sbjct: 467 GGETLLKLAFDIVQSVGVNLD-----IIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFK 521 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 F+L L +Q RDE+H AI H+K++ SL I+G+G + + LL Y Sbjct: 522 SFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQISLLQIKGIGEAKIKKLLLYF 581 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 G + ++ AS +E+ V +++ A I + Sbjct: 582 GEFEKIKKASFDELKTV--LNEKDASTILDYFTN 613 >UniRef50_B1AJ20 UvrABC system protein C n=15 Tax=Ureaplasma RepID=UVRC_UREP2 Length = 584 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 165/598 (27%), Positives = 278/598 (46%), Gaps = 37/598 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+D K LK + +PG Y D +IY+GKAKDL R SYF KT LV Sbjct: 1 MNDL--LKNKLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLV 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 I ++ V + EAL+LE+N IK + P+YN+LL+D +YP+I ++ + +PRL R Sbjct: 58 NNINDLEYIVVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITNEQYPRLKYVRT 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 KG YFGP + + LL IFP +C + Y+ C+ Y + +C+ Sbjct: 118 YDKNKGIYFGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQCI----- 168 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V + Y + + V+ G D +L L ++ + A L+FE A + +Q +A+ + Sbjct: 169 NQVQQSTYQEAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSII 228 Query: 241 EKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 V + + D+IG + + +GK+L +S E++E++ +F Sbjct: 229 NSGLVQLDNNESFDIIGFYEKNNYLVIIIFNYVKGKLLN-KSADTFAIYDYEINELITSF 287 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+Y Q + +I++ + + L+ R LKLA Sbjct: 288 LMQYYSQN----KISSKIIVSLDDDNLLALSQRFHT------KFINAQTKFHKRILKLAL 337 Query: 360 TNAATALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA S + +Q+ + L L +LKLP++ +ECFD S+ +A +V+ Sbjct: 338 DNAILYFESNIKNVINKQNELDDALNQLKQILKLPDLNIIECFDNSNINLSLPIAGMIVY 397 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQ 474 R+YN+ DY M +V+ RRY + + K+P++I++DGGK Q+ Sbjct: 398 QNGKLNNKLNRKYNLMTTKNASDYHFMIEVITRRYQRLVSQHQKLPNLIVVDGGKLQVNA 457 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 A A+L ++ L+G+ K K L G+ L S + +++ Sbjct: 458 ALYALAQLQIN-----IPLIGLKKDQKHKTDAIVL---TNGDEIVLDRKSILYKFLANMQ 509 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 ++ H++AI R K K S L+ ++G+G KR LLKY + L++AS +E+ + Sbjct: 510 NDVHNYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQ 567 >UniRef50_Q7NBC4 UvrABC system protein C n=1 Tax=Mycoplasma gallisepticum RepID=UVRC_MYCGA Length = 592 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 168/615 (27%), Positives = 302/615 (49%), Gaps = 35/615 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F+ K L +PG Y + +IY+GKAK++ KR+ YF KT LV +I Sbjct: 3 FNLKQKLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNG-PKDLKTSKLVNEIF 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 ++ + E EALLLE N IK ++PRYN+LL+D+ YP+I ++ + +PRL R Sbjct: 62 YVEFIEVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILMTKEKYPRLIYTRNFDPK 121 Query: 125 KGEYFGPFPNGYA-VRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 KG+++GPF + + LL K+FP++ C + + R C Y + C+ C V Sbjct: 122 KGKHYGPFASSEMKAYDLYNLLLKLFPLKNC----FNKKGRKCEFYDLNLCMKACTH-EV 176 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 SE +Y + + F DQVL L + AS+ +FE+A + D +A+ + +KQ Sbjct: 177 SEADYEVMKKKIDYFFHNGADQVLKDLKEKESIASEKFDFEQAKKYLDLQKAINLIFDKQ 236 Query: 244 FVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 ++ + + +DV+ + C+ + +++ S++ G E EV+ +++ Sbjct: 237 IINLYSAKERIDVLAYQIKENVICIVLFSYVSSQLV-SKNTICDFYYGEE-QEVITSYLS 294 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y + P + + ++ TLL DSL I + G + LA N Sbjct: 295 QYYKDNIK----PKILYASLDQANATLLKDSLG------IEIINPTSGKMNEIMSLALQN 344 Query: 362 AATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 L+ K + ++ ++ L L ++K+ ++ +E +D S+ V++ +VF+ Sbjct: 345 VTNELSQKYDSLVKKEQRINLALDQLKKLIKVDKLNHLEVYDNSNLFNTDKVSAMIVFEN 404 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS--KIPDVILIDGGKGQLAQA 475 N + +YR+Y I DY M +V+ RR +A+ ++ +PD+I++DGGK Q+ A Sbjct: 405 NQFNKKKYRKYKIKDQQALGDYHYMYEVIYRRLYQALKNNFVDLPDLIILDGGKHQVLAA 464 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 K +L + N L+G+AK + + + SL S + ++++ Sbjct: 465 KKAIVDLQIDKKIN---LIGLAKNNKHQTDK---IVTFDLDEISLDKSSALYFFLANLQE 518 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E H AI RK +AK S L+ I+G+G KR+Q L+++ + ++ AS+ +++V Sbjct: 519 EVHKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQVLP 578 Query: 596 ISQGLAEKIFWSLKH 610 I +A+K+ L Sbjct: 579 I--EIAKKLKQKLDQ 591 >UniRef50_B9KC51 UvrABC system protein C n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC51_THENN Length = 503 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 179/551 (32%), Positives = 285/551 (51%), Gaps = 50/551 (9%) Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 + + ++ V TE EALLLE N I+ Y+P+YNV L+D + YP+I +S D P + + + Sbjct: 1 MEEADDLETIVVTTEKEALLLEANLIRKYRPKYNVRLKDTEFYPYIRISNDDIPYVEIVK 60 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 G YFGP+ VR+ L LQ+I R C+ + R + RPC + + RC+GPC Sbjct: 61 RRLKD-GTYFGPYTTVRFVRDLLETLQRILGFRTCKFDLNRVK-RPCFLFHLKRCVGPCA 118 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G V + E + +E +R FLSG V L +ME S+ L+FE AA+ RD + + V Sbjct: 119 -GNVDQHE--EAIEKLRDFLSGNMRDVFDYLRRKMELHSRMLDFENAAKYRDLLLNLSSV 175 Query: 240 TEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 E Q V+ + DV+ A VL +R G ++G S+ + ++ Sbjct: 176 LESQGVAFEEKINCDVVVHAQG----LFVVLRVRDGYLIGKISFEMEGGN-------LDD 224 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ ++Y+ G +P ++++ +L + + V L+ A Sbjct: 225 FIREYYVSGR--GDVPNSLVVESDLEEMDYTSLGFQY-------VGKPRSQLEKDLLEKA 275 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 R N L ++LS + + L L +L L E V R+E D+SH G+ TVAS VVF+ Sbjct: 276 RKN----LETELSMRGLKKEALKELMKLLNLKEFVYRIEGIDVSHLQGKHTVASLVVFED 331 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P ++EYRRY + + DDY A+ +V+RRRY K +P+++ +DGG+GQ+ A Sbjct: 332 GLPKKSEYRRYRLN-LERPDDYEAIREVVRRRYSK----HPLPNLLFVDGGRGQVNAALE 386 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 +L + ++G+AK E + + + LP D P L ++ +RDE+ Sbjct: 387 ALKDLGKAC-----PVVGLAKK-------EEIIVTEDKD-IVLPQDHPVLRLLIQVRDET 433 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H A+ HR++R K S L+ I GVGP R++ LL++ G ++ +R+ASVEEIA+V G S Sbjct: 434 HRFAVNYHRRRREKESLRSVLDEIPGVGPIRKKKLLEHFGSIESIRSASVEEIARVIG-S 492 Query: 598 QGLAEKIFWSL 608 +A +I L Sbjct: 493 AEVARRILERL 503 >UniRef50_C2KQB5 Excinuclease ABC subunit C n=2 Tax=Mobiluncus mulieris RepID=C2KQB5_9ACTO Length = 702 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 165/522 (31%), Positives = 258/522 (49%), Gaps = 45/522 (8%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 + + PGVYR DA G VIYVGKAK+L+ RL+SYF +T +VA + + Sbjct: 7 PKPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVS 66 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V +E EAL LE+ +IK Y P++NV+ +DDKSYP+ ++ PR+ + R A Sbjct: 67 WVVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGV 126 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP---CLQYQIGRCLGPCVEGLV 183 YFGP+ +A+R+T LL+ +FP+R C + V+ CL+ IGRC PC+ G + Sbjct: 127 RYFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCI-GRI 185 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S E+ + V F+SG + +L L ++M S+ FEEAA+ RDQ++A+R+V EK Sbjct: 186 SAAEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKN 245 Query: 244 FVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V +T D D+ +A D V V ++R G++ G R + + + SE++ + Q Sbjct: 246 AVVMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSFALEQ 305 Query: 303 FYLQGS-----------------------QMRTLPGEILLDFNLSDKTLLADSLSELAGR 339 Y Q + +P +IL+ +D L LS L G Sbjct: 306 IYGQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGS 365 Query: 340 KINVQTKPRGDRARYLKLARTNAATALTSKLSQQST----VHQRLTALASVLKLPEVKRM 395 K+ ++ RG + ++ NA L +++++ + L L L + R+ Sbjct: 366 KVTIRRPQRGMKREAVERVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPLRV 425 Query: 396 ECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGK 452 EC+DISHT G V S VVF+ P + YR++ + G DD AMN+VLRRR+ + Sbjct: 426 ECYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFER 485 Query: 453 AI-DDSKIPDVI---LIDGGKGQLAQAKNVFAELDVSWDKNH 490 I +++ P + + D G A E V+ D Sbjct: 486 LIQEETPAPHEVEPAVTDRGDP----AARYVGESSVAGDVGD 523 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 10/151 (6%) Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++++DG Q+ A+ V ++G+AK LE ++ Sbjct: 555 PDLVVVDGALPQVHAARAAMDAAGV----WDIPVVGLAK------RLEEVWTVDSDFPVI 604 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 P S AL+++Q++RDESH AI HRKKR + S L+ I G+G +++ LLK+ G L Sbjct: 605 FPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKHFGSL 664 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + +R AS E+I+KVPG + LA ++ L+ Sbjct: 665 RQIRRASAEDISKVPGFGRILATQVVKYLQE 695 >UniRef50_B5Y9S9 Excinuclease ABC, C subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9S9_COPPD Length = 595 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 177/620 (28%), Positives = 290/620 (46%), Gaps = 45/620 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + ++ PGVY Y G VIYVGKA DL RL+ Y RS +K +++ Sbjct: 1 MTLRESIEQAPHSPGVYLFYGNSGQVIYVGKASDLHNRLADYARSQP-GQKEHLIMSNAS 59 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR---G 120 ++ + E ++L LE IK Y P YNVLL+D K Y ++ + +P + + R Sbjct: 60 KVSWIIVANERQSLELEETLIKKYAPPYNVLLKDGKGYSYLRIDLSQEYPAVEIVRIKQR 119 Query: 121 AKHAKGEYFGPFPN----------GYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQ 170 FGPF ++ + + +++F IR C+ + + R RPC+ Y+ Sbjct: 120 KPKPGQLLFGPFVPLRVPDMPGKVRGDLKNLIQIAEEVFGIRSCKGPL-KRRMRPCVYYE 178 Query: 171 IGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIR 230 IGRC GPC+ G +S EEY +V+ FL G +V +L M+ ++NL FE AA +R Sbjct: 179 IGRCSGPCI-GKISPEEYKDRVQLFIKFLKGDTKEVENRLTKMMKEEAENLNFERAAELR 237 Query: 231 DQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT 290 D + V+R+ Q +N D+I A A V+ +R G + Sbjct: 238 DLLYTVKRIG-MQREANVDGSADLIAFALKEDQASGFVVSVRDGMITNVFGLKYSSGATI 296 Query: 291 ELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD 350 E SEV+E+F + + L ++ +++ SL + V+ P Sbjct: 297 EPSEVMESFFRDYVRLYHEQGVLA---YVNGAVAETLKPLGSL-----HGVQVEAVPDHW 348 Query: 351 RARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 +A L++A NA + L + + + L + VL+L + R+E FD++ G + V Sbjct: 349 KA-LLRVAEENAESILERDEGTE-RIKRGLLRIKEVLRLEHIPTRIEGFDMAQLFGSERV 406 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGK 469 V + YR Y I G + DD++ M +VL RR + + +PD++LIDGG+ Sbjct: 407 GGKVAYVNGQFYTPWYRHYRIKG-SYKDDFSFMYEVLIRRLQ--DEKTGLPDLMLIDGGR 463 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 LA + +L V+ + +AK DR LF + + LPP+ V Sbjct: 464 QHLAVVEKAMEQLGVT-----VPAVAIAKPDDR------LFVSWKEDPIYLPPEDVGKQV 512 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 +Q IR+E+H HRK R L + G+G RR+ L++ GG+ GL+ AS+EE Sbjct: 513 LQTIRNEAHRWVNSYHRKLRE--DFGDILLGVPGIGKARRRKLIETFGGMVGLQAASIEE 570 Query: 590 IAKVPGISQGLAEKIFWSLK 609 + G+ +A++++ +L Sbjct: 571 LTVKGGLPPKVAQQLYRALH 590 >UniRef50_Q2NJ78 UvrABC system protein C n=3 Tax=Candidatus Phytoplasma RepID=UVRC_AYWBP Length = 589 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 310/613 (50%), Gaps = 42/613 (6%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDV 68 +KT+ PG Y + T+IYVGKAK+LKKR+ SYF + KT L+ + Q Sbjct: 6 EKIKTLPPNPGCYLFKNTKDTIIYVGKAKNLKKRVQSYFTK-RNNLKTAMLIEETQDFFY 64 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEY 128 +T+ E EAL+LE N IK + P+YN L DDK+YP+I ++ + HP+L + R + G+ Sbjct: 65 IITNNEQEALILEANLIKTHTPKYNFKLLDDKTYPYIEITKEKHPQLKISRFKQIPPGKI 124 Query: 129 -FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 FGP+PN + +ETL LL ++P+R+C+ + +PCL + I +CLG C ++ Sbjct: 125 IFGPYPNLKSTKETLKLLHLLYPLRRCQLA----SKKPCLHFHINQCLGACAGKTIN--- 177 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 247 Y ++ + FL G +L +L M+ AS+ + +E+A RD I ++++ T+KQ +SN Sbjct: 178 YKPNIDAITKFLKGNIKDILKKLHHLMQKASEKMFYEKAQEYRDIIDSIKQTTKKQLISN 237 Query: 248 TG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 + D+ AF+ + +L IRQG ++ S G + E + T++ +Y Sbjct: 238 QKLKNCDIFAYAFNQDQIAIQILKIRQGNIVDSYRSVFSYVGF--VCENILTYLNCYYQ- 294 Query: 307 GSQMRTLPGEILLDFNLSDKTLLAD------SLSELAGRKINVQTKPRGDRARYLKLART 360 + + +I++ D+ +L L ++ K+N+ K GD+ + LA Sbjct: 295 ----KNIKPDIIITGKNQDENILQQTITNQTLLEQILQTKVNIYHK--GDKKKLFLLALK 348 Query: 361 NAATALTS----KLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 NA L+ S+ + + L LA + ++KR++ FD S G+ VA+ +VF+ Sbjct: 349 NAQNDLSHNNLIYQSKDQKIQEALNKLAIIFN-KDIKRIDVFDNSQLFGKAFVAARIVFN 407 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQA 475 + YR ++I G ++Y A + L R Y K + ++ D+IL+DG QL Q+ Sbjct: 408 HFEFDKKLYRTFHIKG-ELPNEYQAFEETLTRCYNKGKEAENDATDLILVDGSLVQLRQS 466 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + +L L + K + F E L D H ++ + + Sbjct: 467 QKTLKKLGY-----EIPLGALQKNNKHQLTHLVTF----QEKLMLEQDPNLFHFLKSLSE 517 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E H A+ HRK + K+ ++L I+GVG R++ +L + L+ ++ A++++ K+ G Sbjct: 518 EVHRFAVSFHRKTKKKLDYKTTLSNIKGVGVVRKKAILNHFESLEAIKKATLQDFQKI-G 576 Query: 596 ISQGLAEKIFWSL 608 I+Q L I SL Sbjct: 577 INQKLFLLIKKSL 589 >UniRef50_Q7VK73 UvrABC system protein C n=2 Tax=Helicobacter RepID=UVRC_HELHP Length = 621 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 180/630 (28%), Positives = 299/630 (47%), Gaps = 61/630 (9%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--------SNLAS 53 S ++ L + +Q G+Y+ +D T++YVGKAK+LK R+ SY N S Sbjct: 6 STSYNLLVHLADLPTQSGIYQFFDNEDTLLYVGKAKNLKNRIKSYLSIENKHIVPKNNLS 65 Query: 54 RKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-TH 112 + +V+QI +I +T+ E +AL+LE++ IK +P+YN+LLRDDK+YP+I++ + Sbjct: 66 PRIALMVSQITRIHTLLTNNEQDALILENSLIKSLKPKYNILLRDDKTYPYIYIDKSLPY 125 Query: 113 PRLAMHRGAKHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQI 171 PR + R + +YFGPF +G RE L L P+ Q ++ V + C+ +QI Sbjct: 126 PRFELTRQVLKSNQIQYFGPFVSG--ARELLDSLYDNLPLVQKKSCV--KGKKACIFHQI 181 Query: 172 GRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRD 231 +C PC E VS + YAQ + + +L L S+M T S NL+FEEAA +RD Sbjct: 182 HKCPAPC-ENKVSIQTYAQTIAQGIALIE-DKKALLKILESKMHTLSHNLQFEEAAIMRD 239 Query: 232 QIQAVRRVTEKQFVSNTGDDLDVIGVAFDA----------------GMACVHVLFIRQGK 275 +IQ + ++ + + D DV + + +LFIR G+ Sbjct: 240 RIQKITQMKNQSIIDMMSGDYDVFVLQEQDCGKNSQDSHKKSHTALHTHILMMLFIRNGR 299 Query: 276 VLGSRSYFP-KVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILL-DFNLSDKTLLADSL 333 ++ S L ++ + Y +Q+ LP EIL+ F+ D L L Sbjct: 300 IISSDFILLHDDIQSHNLPQLYTQALLNHY--KTQIPLLPQEILIPPFDFPDLLHLQQLL 357 Query: 334 SELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK 393 E + + RG + L+LA NA + +QQ+ L ++ + L ++ Sbjct: 358 REQTRSSLKIVQPQRGAKKDLLQLAHKNALE-IRRLHTQQNNTFSTLVSIKELCVLSQIP 416 Query: 394 -RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK 452 +E FD SH G V +V++ + +R++YRRY + D+Y+ M+++L RR + Sbjct: 417 YSIEVFDTSHHSGTHNVGGMIVYENDDFIRSKYRRYELHT---SDEYSQMHEMLLRR-AQ 472 Query: 453 AIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGAD-----RKAGLE 507 + D + P + L+DGG+ Q+ A ++ + + +L +AK R G Sbjct: 473 SFDSNPPPALWLLDGGRAQINLALDILKSVGAN-----VEVLAIAKMKHNAKAYRAKGNA 527 Query: 508 TLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP- 566 + F L P+ L +Q +RDE H +AI HR K+ K + + +G Sbjct: 528 FDILRSKNAEFKLKPNDKRLQFLQKLRDEVHRYAITYHRYKKQKDIQKAQM-----MGKN 582 Query: 567 ---KRRQMLLKYMGGLQGLRNASVEEIAKV 593 + + LL Y G + L+ AS E+I V Sbjct: 583 YTQAQIKKLLDYFGSFESLKTASQEQINSV 612 >UniRef50_Q2SSM4 UvrABC system protein C n=5 Tax=Mollicutes RepID=UVRC_MYCCT Length = 584 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 190/612 (31%), Positives = 308/612 (50%), Gaps = 36/612 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + K + +T++PG Y + VIYVGKAK+LKKR+S+YF + KT L+ +I Sbjct: 1 MNLKEQVDLLTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYFNKAY-NIKTTRLIREIT 59 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 + + E E+LLLE N IK Y+P+YNVLL DDK+YP+I ++ P R + Sbjct: 60 HLKYFIVDNEKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIIITNQKDPMYKYVRKYEKK 119 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 +GP P G R L LQ++FP+R C+ + +PCL Y + +C G C + V Sbjct: 120 ALRNYGPLPIGSNARSILLTLQRLFPLRMCKGDL----KKPCLYYHLNQCSGACFK-TVD 174 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 Y Q++ V F G+ +QV L+ +M+ AS NL+FE+A RI+DQI ++ +T KQ Sbjct: 175 SSYYEYQIKQVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQITSLDFITAKQN 234 Query: 245 VS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V T ++DV+ + C +LF R G++ Y + G +L E++ +++ Q Sbjct: 235 VDIVTNKNIDVVNYEINEEKICFVMLFYRLGQLTYKDEYI-QNYEGQDLDELLNSYLQQI 293 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y + L ++LL N D L ++L E + N Q ++KLA+ NA Sbjct: 294 YQ-----KNLYPDVLLIPNEIDLLDLDENLLEFSSYSFNNQDDI------FIKLAKQNAV 342 Query: 364 TALTSKLSQQS----TVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDAN 418 +L + + + L L + + KR+E FDIS+ + +C+V+ Sbjct: 343 DSLNKSILSNNVNSGDELEILDQLQQISNINKYPKRIEIFDISNIYNQFITGACIVYINA 402 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKN 477 P+R E+R+YNI DYA M +L +R+ K I + + +PD+I++DGG Q+ AK Sbjct: 403 KPVRNEFRKYNIDS-QYTSDYARMKFMLEKRFLKRIKEKEQLPDLIIVDGGIIQIHAAKE 461 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V +L++ + ++G++K + K FE + + L +Q DE Sbjct: 462 VLNKLNLKIN-----VIGLSKDNNHKTRYLIDIFEQTIDIKNFKKLYNFLTSLQIRVDE- 515 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 +A G RKK N L I+GVG K L K+ + ++NAS +E+ K+ + Sbjct: 516 --YAKSGFRKKYHNQLNDQILL-IKGVGKKTNLKLYKHFKTIDNIKNASFDELNKIIN-N 571 Query: 598 QGLAEKIFWSLK 609 + + I + K Sbjct: 572 KKITNLIISNFK 583 >UniRef50_D2LI59 Excinuclease ABC, C subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LI59_RHOVA Length = 689 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 175/456 (38%), Positives = 271/456 (59%), Gaps = 10/456 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 ++K + + PGVYRM D G VIYVGKA++LK R+ +Y R + + A++ ++ Sbjct: 33 YVKHLGTGPGVYRMVDLAGEVIYVGKARNLKNRVQNYTRMGGHTNRIAAMIRATATMEFV 92 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKGEY 128 T TE EALLLE N IK ++PRYNV RDDKS+P+I + D ++A HRGA+ KG+Y Sbjct: 93 NTRTEAEALLLEANLIKRFKPRYNVSFRDDKSFPYIVIRRDQEAAQIAKHRGARTVKGDY 152 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF + AV T+ LQ+ F +R C +SVY +R+RPCL +QI RC GPC + ++Y Sbjct: 153 FGPFASAGAVNRTINTLQRAFLLRTCADSVYDSRTRPCLLFQIKRCAGPCTR-EIPLDDY 211 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 ++ V+ FLSGK D V +L + ME A++ LEFE AA+ R+++ A+ V Q ++ Sbjct: 212 SKLVDEATAFLSGKTDAVQRKLNTLMEEAAEALEFERAAKYRNRLWALAHVQAHQGINPK 271 Query: 249 G-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 G ++ DV +A G C+ V F R G+ G+R+YFP+ +EV+ +F+ QFY Sbjct: 272 GVEEADVFAIAQQGGQTCIEVFFFRSGQNWGNRAYFPRADKSLSPAEVLGSFISQFYDD- 330 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P + L + +++L++++LS GRK++V T RG++ + A NA AL Sbjct: 331 ---KLVPRCVFLSEEVPEQSLISEALSTKLGRKVDVVTPRRGEKRELVDYAHQNAREALG 387 Query: 368 SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 KL++ ++ + L +A V L V R+E +D SH MG V +V G + YR Sbjct: 388 RKLAETTSNARLLAGVAQVFGLERVPRRIEVYDNSHIMGTNAVGGMIVAGPEGFAKNHYR 447 Query: 427 RYNITG--ITPGDDYAAMNQVLRRRYGKAIDDSKIP 460 ++NI +TPGDD+ M +VL RR+ + + + +P Sbjct: 448 KFNIRTADLTPGDDFGMMREVLTRRFKRLLKEHGLP 483 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 89/151 (58%), Gaps = 5/151 (3%) Query: 457 SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGE 516 PD++LIDGG GQL+ A+ V AEL + + G+AKG DR AG E F + Sbjct: 539 GAWPDLLLIDGGAGQLSAAREVLAELGLHG----LAIAGIAKGPDRNAGRERFFMPGKP- 593 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 FSLP + P L+ +Q +RDE+H AIG HR KR K + L+ I G+GP R++ LLK+ Sbjct: 594 PFSLPLNDPVLYFVQRLRDEAHRFAIGSHRAKRKKAMTENELDGIPGIGPTRKRALLKHF 653 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 G + + A + ++ V GIS +A++I+ Sbjct: 654 GSAKAVSRAGLSDLRAVDGISAAMAQQIYDW 684 >UniRef50_A9EYQ9 Excinuclease ABC, subunit C n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EYQ9_SORC5 Length = 742 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 167/457 (36%), Positives = 241/457 (52%), Gaps = 9/457 (1%) Query: 15 TSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK--TEALVAQIQQIDVTVTH 72 + PG Y D G V+YVGKAK L+ R+ SYF+ + + + L + ++ VT Sbjct: 22 PTTPGCYLFIDKAGAVVYVGKAKSLRSRVRSYFQESGSDARYFIPILRKIVADLETVVTA 81 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEYFGP 131 TE EA +LE+ +K ++PR+NV LRDDK + + L + P L R K YFGP Sbjct: 82 TEKEAAVLENELVKQHKPRFNVKLRDDKDFLCLKLDTQKAWPMLETVRRPAPDKARYFGP 141 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 + + + R TL L+ K F +R C ++ +R RPCLQYQI RCL PCV V E Y + Sbjct: 142 YHSATSARRTLHLVNKHFQLRTCSDTEMASRRRPCLQYQIKRCLAPCVMD-VDRELYTEM 200 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD- 250 V V LFL G+ D++ +L +RM AS+ LEFE AA RDQ++AV V E Q V D Sbjct: 201 VRSVALFLEGRHDELTGELTTRMRDASRELEFERAAIYRDQLRAVEAVREAQRVVYVKDV 260 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 D DV+G+ + + V V+ +R+G+V + S+ + EV+ F+ ++Y G Sbjct: 261 DQDVVGIYREGTLVEVEVILVRRGRVTDTLSFSLRN-MELPDDEVLGGFLNEYY--GVAS 317 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 T+P E+L+ +A+ L + GRK+ + RG R LK+A NAA A K Sbjct: 318 TTIPDEVLVPVLPDGAEGVAEWLGDRRGRKVALFVPQRGPRVDLLKMANENAAHAFREKQ 377 Query: 371 SQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 + RL + L+LP + R +EC DISH G TV S V P + YR +N Sbjct: 378 RSSDDLEARLEEIRERLRLPTLPRRIECCDISHLGGGDTVGSIVALLDGQPDKKRYRSFN 437 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILID 466 + + GDDYAAM +VL RR+ + + D Sbjct: 438 VKSVADGDDYAAMYEVLSRRFRRGKAARQASPASTAD 474 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 446 LRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 + RR + +PD+ ++DGG+GQL A + +L + ++G+AK + + G Sbjct: 555 VSRRAEAGGGEWDLPDLFVVDGGRGQLQVALSAARDLGLHG----LPIVGLAKERETQTG 610 Query: 506 ---LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR--AKVKNTSSLET 560 ++ ++ + G L S AL + RDE+H A H +KR + S +E Sbjct: 611 EKLVDRVYLPGQKNGIPLRSTSSALFFLARARDEAHRFAN--HARKRLGKARRLRSEIED 668 Query: 561 IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 I G+G R LL+ +G ++G+R A+ +I V G+++ Sbjct: 669 IPGLGSAVRTALLRELGSMEGVRRATDAQILGVTGVTKR 707 >UniRef50_A7HJI0 UvrABC system protein C n=3 Tax=Thermotogaceae RepID=UVRC_FERNB Length = 563 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 172/601 (28%), Positives = 293/601 (48%), Gaps = 51/601 (8%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 L+ + ++ GVY IY+GKAK+LKKRL+S+F++ K++ +V + + V Sbjct: 6 ILEKIPNKSGVYIFKKGE-EYIYIGKAKELKKRLTSHFKA--KDGKSKLIVEEADDLQVI 62 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 + E EAL+LE N I Y+P+YN +L+D + YP+I +S D P L + R + +GE++ Sbjct: 63 LLDNEKEALILEANMIYKYKPKYNAMLKDTQVYPYIRISNDEIPYLEIVRN-RKGEGEFY 121 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF N Y R+ +L+K++ R C+ + + + +PC+ Y +G C G C+ S E+Y Sbjct: 122 GPFTNVYFTRQLFEVLRKVYKFRTCKRDITKLK-KPCMDYHLGLCSGVCI-NEESPEDYK 179 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNT 248 +++ V+ L GK V++ + +ME ++ L+FE AA+ RD + +V E Q V Sbjct: 180 KKINEVKNVLKGKFSNVISFIKLKMEQHARLLDFENAAKYRDILLNFNKVMESQGVVLPE 239 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 ++D++ V IR G ++ Y E + F+ FY Q + Sbjct: 240 SVNIDLVV----GKHKTFLVFKIRSGYLISKLVY--------EYDGHIVDFIELFYTQNT 287 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 +P +I+++ + +A L I + + L A N + Sbjct: 288 S--DIPEKIIVEKENKELKNIAKILG------IKIAQAKDDLELQLLNKAIDNLNYEIGL 339 Query: 369 KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 L+ + L + +L L ++ R+E DISH G+ TVAS VVF+ + EYRR Sbjct: 340 ILTNKI----ILKQMKELLGLMKLPNRIEGIDISHLAGKNTVASLVVFENGEIKKEEYRR 395 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWD 487 Y + I DD+ ++ V+++RY K +PD++ IDGG GQ+ A E+ + Sbjct: 396 YKLGDIL--DDFESIRIVVKKRYTK----HNVPDLLFIDGGIGQVNAAYQSLKEIGKERE 449 Query: 488 KNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 547 + ++G+AK + L L D P L ++ IRDE+H A R Sbjct: 450 CD---VIGLAKEEETIVTLHG--------EIRLAFDHPVLRLLVKIRDETHRVANEFTRN 498 Query: 548 KRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 K S L+ I+ +GPKR++ LL+ ++ + + S EI ++ I + E + Sbjct: 499 LSTKKSLRSILDEIKWIGPKRKKTLLERYTSIEEILSVSRSEIEQL--IGKKATESLLNE 556 Query: 608 L 608 L Sbjct: 557 L 557 >UniRef50_D0WMS6 Excinuclease ABC subunit C n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMS6_9ACTO Length = 734 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 167/479 (34%), Positives = 249/479 (51%), Gaps = 35/479 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEAL 59 M+D + + +QPGVYR D G V+YVGKAK+L+ RLSSYF+ S + A+ Sbjct: 1 MADPRQYRPEQGAIPTQPGVYRFLDGEGRVLYVGKAKNLRARLSSYFQDPAGLSDRIRAM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V + + V +E EAL LE+ +IK + P +NV+ RD+KSYP++ +S G+ +PR+ + Sbjct: 61 VYTAEAVKWVVVGSEVEALTLEYLWIKEFTPTFNVVFRDNKSYPYLAVSLGEEYPRVWVT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRCL 175 R Y GP+ +A+RETL L +FP+R C S + R RPCL IG+C Sbjct: 121 RQEHRKGTRYLGPYTKVWAIRETLDQLLSVFPMRSCTKSQFNQARRLGRPCLFGHIGKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC+E V+ EE+ + + F+ G + + RM A+ E+E AAR+RD+I A Sbjct: 181 APCIE-RVTPEEHRETAMSLIRFMEGGGSKAIATRRKRMLEAANAEEYETAARLRDEISA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + V E+ V N D+D+ G+AFD A V V ++R G++ G +++ GG ELSE Sbjct: 240 LEAVNERNVIVLNENLDVDIFGIAFDEIEASVQVFYVRGGRIRGQQAWISDEIGGLELSE 299 Query: 295 VVETFVGQFYLQ--------------------GSQMRTLPGEILLDFNLSDKTLLADSLS 334 +V V Q Y + + +P EI + D L L+ Sbjct: 300 IVSNLVLQVYGDVKFDEVVAVPEASRSVDDRAHTPLGAIPSEIWVPGLPEDALELQKWLA 359 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTS-KLSQQSTVH---QRLTALASVLKLP 390 E G + ++T RGD+A+ R NA AL KL++ + Q L L L+L Sbjct: 360 ERRGGTVRLKTPRRGDKAKLAHTVRLNAEQALARHKLARAGDITVRSQALEELRDALELD 419 Query: 391 EVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---GDDYAAMNQV 445 R+EC+D+SHT G VAS VVF+ +A+YR + + G DD AAM++V Sbjct: 420 RAPLRIECYDVSHTQGTHQVASMVVFEDGLAKKADYRHFIVRGPDGEGAADDTAAMDEV 478 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 17/161 (10%) Query: 448 RRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLE 507 RR+ PD+I++DGG Q+ A+ V E ++G+AK LE Sbjct: 587 RRFAYK------PDLIVVDGGLPQVNAAQRVVEETGA-----DVRIVGLAK------RLE 629 Query: 508 TLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPK 567 ++ E LP SP+L ++Q +RDESH AI HRKKRAK S+L+ + G+G Sbjct: 630 EVWIPGEDFPVVLPRRSPSLRLLQQLRDESHRFAITFHRKKRAKAMTRSALDAVPGLGAA 689 Query: 568 RRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 +++ LL +G L ++ AS EE+ KVPGI LA I Sbjct: 690 KQKALLGSLGSLAKIKAASQEELLKVPGIGPALARAIVEHF 730 >UniRef50_P47448 UvrABC system protein C n=2 Tax=Mycoplasma RepID=UVRC_MYCGE Length = 597 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 160/613 (26%), Positives = 281/613 (45%), Gaps = 34/613 (5%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + K LKT +PG Y D+ G V+YVGKA ++ R+ YF+ N KT+ L +QI Sbjct: 4 NLKQKLKTAPKKPGCYLWKDSNGKVLYVGKASNIFNRVHQYFQKN-NPYKTQLLSSQISD 62 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D + E +AL LE I YQPR+N++L+ + Y + +++ P L + R + Sbjct: 63 VDFFILKDENDALNLEAKLINQYQPRFNLVLKQNNGYLYFYITKAKKPTLELARKYQIKT 122 Query: 126 GEYFGPFPNG-YAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 + FGPF + + +RE LL K+FP+R+C ++ PC +Q+G C+G C++ + Sbjct: 123 TKCFGPFASSKFKLREIHDLLLKLFPLRKCA---PHQKNHPCFYFQMGLCMGQCMQTD-T 178 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +E+Y Q + + F + V+ L + + AS N EFE+A + +AV +T+ Sbjct: 179 KEKYQQVISNIEQFFN-DPSVVINYLKAAEKKASDNQEFEKAQQFLTLQKAVLELTKTHH 237 Query: 245 --VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSR--SYFPKVPGGTELSEVVETFV 300 + D IG F + + + +G++ + + E+ + TF+ Sbjct: 238 TTIIKQKSSHDFIGYVFQNNVLAITIFCYEKGELTDKEQAVFTLEQTDIVEVESAIITFI 297 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Y + LP +I + + ++ L++DSL KI V G+ L+ Sbjct: 298 YHHY----KTTPLPSKITVSLDETNLKLISDSL------KIGVFKPKNGNEKLILQTVID 347 Query: 361 NAATALTSKLSQQSTVHQRL---TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 NA AL +K + ++ + + LA +L + +E D+S V + F+ Sbjct: 348 NAKHALATKWLKFTSNYDKTQLHKDLAQLLNTDYIHSLEIIDVSFYDQNHVVGCMLRFED 407 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIP--DVILIDGGKGQLAQA 475 ++ RRYNI + GD V RR + +P D+++IDGGK Q+ Sbjct: 408 GKKIKHLSRRYNINSLKKGDTNHIALLVYRRILSAMQTKANLPFSDLLIIDGGKAQIKSV 467 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 K VF+ + + P+++G+ K + + L + + + +SP H + I+ Sbjct: 468 KQVFS---LFSNVKPPIIIGLVKNKNHQTDHIML---SDFQVKKIAINSPLFHYLATIQT 521 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E A K + + + L I GVG Q+L L ++ ASV E+++ Sbjct: 522 EVDGFAKRSAFNKLSNHQLQNPLLQIPGVGKITAQILFDNFQTLNNIKLASVNELSQF-- 579 Query: 596 ISQGLAEKIFWSL 608 I + LA+KI Sbjct: 580 IKKPLAQKIKTYF 592 >UniRef50_A8FMV1 UvrABC system protein C n=22 Tax=Campylobacter RepID=UVRC_CAMJ8 Length = 600 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 174/619 (28%), Positives = 297/619 (47%), Gaps = 42/619 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-------SNLASRKTEA 58 + + LKT+ + GVY+ ++ G ++YVGKAK+LK R+ SYF + S + + Sbjct: 5 NLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQK 64 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 ++ + ++ T++E +AL+LE+++IK P+YN+LLRDDK+YP+I++ + PR + Sbjct: 65 MIEETVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEI 124 Query: 118 HRG-AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 R K +K +YFGPF RE L L +P++Q + PC+ YQI RCL Sbjct: 125 TRKLVKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLA 177 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PC + +S E+Y + ++ L ++ L +M +QN +EEAA++RDQI + Sbjct: 178 PC-DKRISREKYLEILDEAMHALL-NPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTI 235 Query: 237 RRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT--ELS 293 + + K + +D +V +AF+ M ++ GK++ S + + + Sbjct: 236 KDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKN 295 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 E+ + + + + + L I + D+ LL + LS+ +KI+++ G++ R Sbjct: 296 EIYKQLILENFS--MDIPLLANVIYVYEEFEDRMLLEEILSQRFDKKISIKIPKIGEKRR 353 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASC 412 LA NA + + Q L S +L + +E FD SH G V + Sbjct: 354 ICDLAFQNALLNIEKEQKNHDFTIQ--KELKSYFELENLPNDIEIFDNSHLQGVANVGAM 411 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 V + AN +++YR++++ +DY M +VL RR D PD+ LIDGGK L Sbjct: 412 VTYSANSWDKSKYRKFHLK---HKNDYDQMREVLMRRAL-DFDKIPPPDLWLIDGGKALL 467 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGA-----DRKAGLETLFFEPEGEGFSLPPDSPAL 527 AK + + D +L ++K R G FSL + L Sbjct: 468 DLAKEIIVSSGANVD-----ILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDKKL 522 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +Q +RDE+H AI H+ + K SS G+ Q LL Y G + + A Sbjct: 523 QFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQKLLAYYGNFESIYKADF 582 Query: 588 EEIAKVPGISQGLAEKIFW 606 +++A + G + +A+KI Sbjct: 583 KDLAMLVG--KKVAQKIKE 599 >UniRef50_B4U9X0 UvrABC system protein C n=3 Tax=Aquificaceae RepID=UVRC_HYDS0 Length = 565 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 171/607 (28%), Positives = 288/607 (47%), Gaps = 48/607 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 D A ++ +PGVY + IY+GKA ++KKRL + + S+K + + Sbjct: 1 MDIVALIEKAPEEPGVYIFKNQK-HYIYIGKAINIKKRLLQHLKEREQSKKEANIFNHSK 59 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +++ VT E EALLLE + I+ ++P+YNVLL+ YP I L+ D +P + + R Sbjct: 60 ELEWIVTRNEYEALLLEMDLIRTHKPKYNVLLKHGSGYPVILLTDDEYPTVKITRDTSE- 118 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 KGE FGPF N + L+ F +R CE R PC+ Y +G C GPC L+S Sbjct: 119 KGEAFGPFLNINKALKIKKLIHATFRLRTCEEMP--KRPTPCMDYHLGLCSGPCA-NLIS 175 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +E+YA V+ + FLSG VL L ++E + NL FE+AA +RDQ+ ++ + + Q Sbjct: 176 KEDYAISVKSAKAFLSGNVKDVLPTLYEKIEQYASNLAFEKAAFLRDQVLVLQNIVDGQG 235 Query: 245 V-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V +++DV + + + IR +++ + + EL E +G + Sbjct: 236 VFLYDIEEVDVFYL----EGYSLWLFIIRNKRLVAHKEFRL----NKELIINYEEMLGTY 287 Query: 304 YLQGSQMRTLPGEILLDFN-LSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 Y+ +P +I+ +F + L S + N+ LK+ N Sbjct: 288 YMSN----IVPKKIVANFELTENFRLFIKSKRKDVAFSNNIPKP-------LLKIIEKNV 336 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 +K + + K +ECFDISH G+ TV S VV++ + Sbjct: 337 VLKPDTKEFES--------EFYKLFGRKAPKLIECFDISHFQGQYTVGSMVVWEDGSLNK 388 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAE 481 ++YRRY I + DD+A++ +VL RR + + + + PD+ LIDGGKGQL+ V + Sbjct: 389 SKYRRYRIKTVDYIDDFASLKEVLSRRAKRIVSKEDQTPDMWLIDGGKGQLSMGIEVKEK 448 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 ++ + +AK E + + +G + V +RDE+H A Sbjct: 449 FLLN-----IYICSLAKK-------EEIIYTEDGLEIPIKNHQALYRVFGLLRDEAHRFA 496 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I +R R+K +L I+GVG +++++ ++ L + E++ K+ GIS+ + Sbjct: 497 ITYNRNLRSKEFIKDTLSKIKGVGKVKKEIIYRHFDSLYDFIKSDDEKLKKL-GISKSIK 555 Query: 602 EKIFWSL 608 E + L Sbjct: 556 ESVKKIL 562 >UniRef50_C3XEM6 Excinuclease ABC subunit C n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XEM6_9HELI Length = 563 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 172/570 (30%), Positives = 273/570 (47%), Gaps = 43/570 (7%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-----NLASRKTEALV 60 ++ L+ + ++PG+Y+ YD ++YVGKAK+LKKR+ SYF S + + +V Sbjct: 4 TLQSQLQKIPNEPGIYQYYDKDDKLLYVGKAKNLKKRVKSYFTKECSPNPKNSLRIQHMV 63 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 AQI I + E EAL+LE+++IK P+YN+LLRDDK+YP+I ++ D +PR ++ R Sbjct: 64 AQIAHIHTIIVANEHEALILENSFIKSQNPKYNILLRDDKTYPYITINLNDCYPRFSITR 123 Query: 120 G-AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 KH YFGP+P G +E L L ++FPI Q + +PCL YQIG+CLG C Sbjct: 124 RIIKHKDTLYFGPYPKG--AKEILQSLYELFPIVQ--QASCLKGKKPCLYYQIGKCLGVC 179 Query: 179 -VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 ++ ++ EY ++ + + ++ L S M + ++ FE+A +D I ++ Sbjct: 180 SIKDSNTKAEYDSYIQQAIILMK-NTSKMQKVLESSMLSFAEKELFEQAKICKDCIDVLQ 238 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE-- 294 T+ V + DV A + LF+R GKV+ + F K + Sbjct: 239 ETTKFCAVDMKKLYNADVYSFVLQGSNAILFKLFVRDGKVVSTHHQFVKPNMTNDAENPS 298 Query: 295 ----VVETFVGQFYLQG----SQMRTLPGEILL-DFNLSDKTLLADSLSELAGRKINVQT 345 + E + Y Q + TL +I+L D + L DS+ E A + + Sbjct: 299 QKELIREELACEIYTQALLKILKEGTLCDDIILADISTESLQTLKDSIPEFANK---LFA 355 Query: 346 KPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTM 404 +G++ R LARTNA LT K + + Q L + + L E+ +E FD SH Sbjct: 356 PQKGEKLRLATLARTNALHILTHKTNLYAKQEQVLQEIKELFSLDHEITSIEVFDTSHHS 415 Query: 405 GEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVIL 464 V V + + YR YN++G D+Y+ M ++L RR K+ D++ P + L Sbjct: 416 SSFIVGGMVSYVDYDFYKPGYRHYNLSG---KDEYSQMREMLTRR-AKSFDENPAPSLWL 471 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGAD-----RKAGLETLFFEPEGEGFS 519 +DGG Q+ A + +L +AK R G + F Sbjct: 472 LDGGLAQINLALEILESSGA-----RVSVLAIAKEKRDSKAYRAKGHAKDIVRSKHVEFR 526 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 L + P L +Q +RDE+H AI HR K+ Sbjct: 527 LQANDPRLQFLQKLRDEAHRFAITFHRNKK 556 >UniRef50_B3DRV5 UvrABC system protein C n=18 Tax=Bifidobacterium RepID=UVRC_BIFLD Length = 746 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 163/568 (28%), Positives = 261/568 (45%), Gaps = 78/568 (13%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVA 61 D F K + ++PGVY+ D G VIYVGKAK+L+ RL++YF+ L +T+ +V Sbjct: 7 DLFRPKT--SDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVL 64 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRG 120 + ++ TV TE E+L LE+ +IK + PR+NV RDDK+YP++ + +G+ PR+ + R Sbjct: 65 TARSLEWTVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRS 124 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRCLGP 177 K YFGP+ + +R +L L + FP+R C +V+ RPCL IG+C P Sbjct: 125 RKRRDTRYFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAP 184 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGK-DDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 CV + +E+ + E + ++G+ + QL M+ AS LEFE+AAR+RDQIQ + Sbjct: 185 CV-NRIEADEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQML 243 Query: 237 RRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 V ++ V D D DV G A D A VH ++R G + G R++ + + +++ Sbjct: 244 ETVVQQNAVVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADL 303 Query: 296 VETFVGQFYLQG------------------------------------------------ 307 + + Q Y Sbjct: 304 MADLLVQVYSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTG 363 Query: 308 -----SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 + + +P EI++ + + L L+ L G + ++ RGD+ + + A NA Sbjct: 364 RADLLAPIAPVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENA 423 Query: 363 ATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGEQTVASCVVFD 416 + AL ++S Q + +A L L E R+EC+DIS+T G VAS VVF+ Sbjct: 424 SQALQRSKMSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFE 483 Query: 417 ANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGKAI------DDSKIPDVILIDG 467 ++EYRR+ I G DD +A+ + L RR+ + + Sbjct: 484 DAIAKKSEYRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAA 543 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLG 495 GK A A A + + G Sbjct: 544 GKMTTAVAAETIAANGNDNGEGGSDISG 571 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 10/151 (6%) Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 P+++++DGGK Q+ A + V N + G+AK LE ++ + Sbjct: 605 PNLVVVDGGKPQVMAAAKALEDCGV----NDVAVCGLAK------RLEEVWVPDDDYPII 654 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 L S ++++Q +RDESH AI HR++R K S+L+ I G+G ++ LL + G + Sbjct: 655 LKRQSEGMYLLQRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSV 714 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + +R ASVE+ KV GI AE ++ +L Sbjct: 715 KAMREASVEDFEKVKGIGHAKAEALYTALHE 745 >UniRef50_Q6KH99 Excinuclease ABC nuclease subunit C n=2 Tax=Bacteria RepID=Q6KH99_MYCMO Length = 565 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 150/616 (24%), Positives = 271/616 (43%), Gaps = 62/616 (10%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+ D L VT++PGVY + G ++YVGKAK+L+ R+ YF L S KT LV Sbjct: 1 MNKTLD----LDNVTTKPGVYLWKNKHGNIVYVGKAKNLRSRMKQYFSGMLNSYKTIKLV 56 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS--GDTHPRLAMH 118 I +V VT +E EAL+LE N I+ ++P +N+LL DDK YP+I +S + + Sbjct: 57 QIIDSYEVIVTTSEKEALILERNLIETHKPSFNILLIDDKRYPYIKISLLKNDIEIKMVR 116 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R K Y+GPFP G+ + + LL + + V +N S Sbjct: 117 RYKKQNNSFYYGPFPTGFGAKVLINLLIRETKFEKGLPVVNKNAS--------------- 161 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 + +Q + V+ L + + + L +M +++N +FE A I+ I + Sbjct: 162 --------YWKEQFKKVKNILGVNNKEYINDLKKQMFLSAENFQFEIANEIKSTILFLEE 213 Query: 239 VTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + Q V ++DVIG + D +++LF R G +L S + + ++ E + Sbjct: 214 LKNNQVVELKNDKNIDVIGFSEDKNYIFLNMLFYRYGALLSSEDFVLEKL--SDGKETIR 271 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 F+ ++Y + LP E+++ + L D + RG L Sbjct: 272 KFINEYYT----LNLLPDELIISLEFTHNDLNFDF---------EILNPKRGTYKNILDN 318 Query: 358 ARTNAATALTSKL----SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 A +A K+ ++ + L +L+ + D S+T V+ + Sbjct: 319 AIMSANEKREIKILEFERKKEITINNIEKLEELLETKNLNHFLVIDNSNTNNFSPVSVII 378 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 + + Y+++N+ D M + R + K ++ IPD++++DG Q+ Sbjct: 379 SYKNGLKDKKNYKKFNLETGDRKADVEYMKEACFRYFSK--KENPIPDLLIVDGALAQVR 436 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 + K + A L + ++G+ K + + + E S D+ L ++ I Sbjct: 437 EVKKILASLFIKLK-----VIGLVKNDKHITS-HIINLKEKREEIS---DASLLIFLKSI 487 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 ++E A HR R K L +I+G+GPK + LL+ + NAS+E++ K+ Sbjct: 488 QEEVDRFAKFHHRSLRTKNTLEGFLLSIKGIGPKTEKKLLENFKNYSEIYNASLEDLEKI 547 Query: 594 PGISQGLAEKIFWSLK 609 +S+ +A+ ++ +K Sbjct: 548 --LSKSIAKTLYEKIK 561 >UniRef50_O84899 UvrABC system protein C n=13 Tax=Mycoplasma RepID=UVRC_MYCAP Length = 571 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 150/610 (24%), Positives = 262/610 (42%), Gaps = 54/610 (8%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 D+ + LK ++ PGVY DA V+YVGKAK+L+KRL YF + S KT L++ Sbjct: 2 DKNEIILKLKNTSTSPGVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSL 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 + +V + T EALLLE + + P +N+LL DD+ YP++ + L + K Sbjct: 62 VADFEVYICKTNKEALLLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKD-SLLITLSRK 120 Query: 123 -----HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 Y+GPFP+GY + L LLQ Y+ G + Sbjct: 121 VNTKYTKNTLYYGPFPSGYGAKPILKLLQHEA------------------LYESGLLI-- 160 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 + Q ++ LS K++ L +L ++M TA+ N++FE A +RD + ++ Sbjct: 161 ---KNNDSSFWVNQFAKIKEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLK 217 Query: 238 RVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 ++ E Q + + ++DV D + VLF R G ++ + +P G + E + Sbjct: 218 KLKESQIIELSQYKNIDVFAYKTDEKLIYATVLFYRYGVLINKVN--LTIPLGISIDESI 275 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 F QFY + LP ++ + L S + KI K L Sbjct: 276 RVFFEQFYAD----KILPDNFIVQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLN 331 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 + ++L + ++ L++L L LP++K + FD S+ V +V+ Sbjct: 332 DYYEKEHLIMQNQLEKADSM---LSSLNKYLNLPKLKNIVIFDNSNINNINPVGVAIVYT 388 Query: 417 ANGPLRAEYRRYNITGIT-PGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQA 475 ++ YR++N+ ++ D + Q + + + ++K D+I+ DGG Q+ +A Sbjct: 389 NGIKNKSLYRKFNLEALSYRSADVDYIRQSITKFFSSD-KNTKDFDLIITDGGLQQVNEA 447 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH-VIQHIR 534 K L ++ ++G+ K K E + + LH + I+ Sbjct: 448 KKTLKVLGIN-----IPVIGLVKNEYHKTRALIDLNLNE-----IYVNDLELHNYLAQIQ 497 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 E A R ++ L I+G+G Q LL + + +ASVEE+AK+ Sbjct: 498 IEVDRFAKSHFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAKIYDASVEELAKIV 557 Query: 595 GISQGLAEKI 604 + +A+ I Sbjct: 558 PFN--VAKSI 565 >UniRef50_Q4A6D1 Excinuclease ABC subunit C n=2 Tax=Mycoplasma synoviae RepID=Q4A6D1_MYCS5 Length = 582 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 148/626 (23%), Positives = 268/626 (42%), Gaps = 68/626 (10%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M + + + LK + +PG Y D VIYVGKA +L R++SYF+ N+ S KT A+ Sbjct: 1 MDKKQELLSLLKNIPKKPGTYLWKDQFDNVIYVGKANNLHNRMNSYFKGNINSFKTYAMF 60 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 I D + + AL+LE YI Y+P+YN++L DDK YP++ + D+ +R Sbjct: 61 ENIYSFDYFIADSPKAALILEKKYIDQYRPKYNIMLLDDKQYPYLNIKIKDSLEIKQTYR 120 Query: 120 GAKHAK-GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 +K+++ Y+GP+P + + + +LQ+IF N + +P Sbjct: 121 VSKNSEFNIYYGPYPQSHLFK-FVKILQRIFLY----NQGLLIKDKP------------- 162 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 + + ++ ++ L K++ L +M A+ NL FE A + ++ + + Sbjct: 163 ------KMYWIEKFNILKEILKFKNNDFNNLLKEKMIAAADNLNFEAAIEYQKALEFISQ 216 Query: 239 VTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK--VPGGTELSEV 295 EKQ + + + DV + + + G ++ F + + L + Sbjct: 217 FKEKQIIEISKYKNYDVFSFEEKNESIAIFYMLY----IYGVQNIFQRKIIENYDSLENI 272 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + F+ +FY + + LP I+LD+ D L D K + +G + Sbjct: 273 ISNFLKEFY----KNKALPDNIILDYKYKDLNLDLDF-------KSKIIFPQKGINHDLI 321 Query: 356 KLARTNAATALTSKLSQQSTVHQ----RLTALASVLKLPEVKRMECFDISHTMGEQTVAS 411 KLA N + S L+Q+ + Q LAS L L ++ + FD SH + S Sbjct: 322 KLANENNNSGYESYLNQKIILEQHKLNLWKNLASELFLDKLNSIFIFDNSHFNNSNPIGS 381 Query: 412 CVVFDANGPLRAEYRRYN----ITGITPGDD----YAAMNQVLRRRYGKAIDDSKIPDVI 463 C+ + Y +N + D Y ++ + L+R + D D+ Sbjct: 382 CICYTKAEKNPHLYASFNHEKEQKELKIKSDIEYMYHSVYKYLKRNHLFITKD----DIF 437 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKN-HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 ++DG Q+ A+ + + ++ N L G+ K + K L + + Sbjct: 438 ILDGSSMQIKFAQKAILDFNKDFNANLEIKLFGLVKDKNHKTNLMI-----NSKDEIIKI 492 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGL 582 S + + I++E A +K + + S L I+G+ K + LLK+ G + Sbjct: 493 SSESFLFLSKIQEEVDLFAKKRMQKNQINLTFKSRLIQIKGISYKTEEKLLKHFGTFANI 552 Query: 583 RNASVEEIAKVPGISQGLAEKIFWSL 608 NAS EE+ KV ++ +A+KI +L Sbjct: 553 YNASFEELQKVT--NKSIAQKIKENL 576 >UniRef50_Q98R54 EXCINUCLEASE ABC SUBUNIT C n=1 Tax=Mycoplasma pulmonis RepID=Q98R54_MYCPU Length = 563 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 149/609 (24%), Positives = 266/609 (43%), Gaps = 60/609 (9%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVT 69 L +V +PGVY D +++Y+GKA +L R+ YF+ +L S KT ALV +I ++ Sbjct: 5 KLDSVPKKPGVYFWKDQFNSILYIGKANNLNDRMKQYFKGSLNSYKTHALVEKIANFEII 64 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHA--KG 126 + EAL+LE N I+ ++P YN+LL DDK + +I + +++ R Sbjct: 65 IVQNPKEALILERNLIRKHKPYYNILLSDDKRFSYIKIFLNKDGLEISIARRVYKNSQNT 124 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 Y+GPFP G+ L LLQ+ ++Y N G +E S Sbjct: 125 LYYGPFPTGHGSSIILKLLQR--------EALYEN--------------GIFIENKDSV- 161 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 + Q+ E ++ LS K++ L Q+ +M A+QN +FE A ++ + + ++ E Q Sbjct: 162 FWKQRFEKIKDILSFKNNLYLNQIKEKMLIAAQNYQFEVANNLKLSHEYLMKLKESQIAE 221 Query: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 ++DVI + G+ + F + G +L + ++ E S VE F+ +FY Sbjct: 222 LKKILNIDVISIIEKNGLLFSTIFFYKYGVLLNKVDHIIEIKISFEAS--VEEFINEFY- 278 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + + P ++L DK+ L +L + V +G + + L N T Sbjct: 279 ---KNKIAPNLLIL-----DKSFLKFNLE--LNFETKVLYPKKGIYKKLIDLVNENTLTN 328 Query: 366 LTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 + K L + L L++++ + + R+ D SH ++ V + Sbjct: 329 INEKEKVHLLKIEKTKNNLDKLSNLINVKNLHRIVMMDNSHFANFHPISVVVSYIDGIKN 388 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI--PDVILIDGGKGQLAQAKNVF 479 EYR++N+ D A + + + K I+ PD+ ++DG QL + K Sbjct: 389 TNEYRKFNL---DVNHDRKADIEYFKEGFLKYINSKSFIVPDLFIVDGSFAQLHEVKKQM 445 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 + +++ ++ + K + E L D + + I++E Sbjct: 446 KKANLT-----FPIIALVKDDFHRTKK----LIDTNEKEHLLEDKEVKNFLSMIQNEVDQ 496 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 A H +R K SL I+G+GPK + L+ + + NAS +E+AKV I Sbjct: 497 FAKKHHYNRRDKSSLEGSLLNIKGLGPKMEKKLISHFETYSNIYNASEKELAKV--IPLN 554 Query: 600 LAEKIFWSL 608 +A+KI ++ Sbjct: 555 IAKKIKSTI 563 >UniRef50_B3PN41 Excinuclease ABC nuclease subunit C n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PN41_MYCA5 Length = 561 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 134/610 (21%), Positives = 246/610 (40%), Gaps = 62/610 (10%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQI 66 K+ +K V + PGVY D G VIYVGKAK+L+ R+S YF N L S KT ++ +I Sbjct: 4 KSEIKNVPALPGVYLWKDKDGNVIYVGKAKNLQVRMSQYFDKNMLNSYKTPKMLEKIGSF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHP-RLAMHRGAKHAK 125 + ++ EA +LE I Y+P YNVL S+P+I + + + ++ + K K Sbjct: 64 STFIVTSDREAFILERKLIDQYRPFYNVLFPIRSSFPYIRVKLENNGFKIDIQNHYKKEK 123 Query: 126 G-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 Y+GP P+ + + L + L + G + S Sbjct: 124 NSIYYGPLPSNKNFKPLIRYLNHL------------------LLAKDGLLI-----KNAS 160 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR-RVTEKQ 243 +E + + E + + + L +++ ++ +FE ++ + + E+Q Sbjct: 161 QEYWKTKFEEAKKIMKFGP-EFRNNLKQKIKETNEVFQFEVSSFYSSILDLLDYNKQEQQ 219 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + +DV G + + V F R G ++ + + + E F+ +F Sbjct: 220 TFIKSQKSIDVFGFYESQEIMLIFVNFYRSGTLINQQEFALDIKTSKE------NFINEF 273 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 + LP E++LD + + A K+ + + LA NA Sbjct: 274 LNEFYSKNPLPDEVVLDDKFASFNFDVKEIMVFAKTKMYL---------SLIDLANKNAQ 324 Query: 364 ----TALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQ-TVASCVVFDAN 418 L + LSQ++ ++ L L+ +R+ FD S + G + V F+ Sbjct: 325 NDQQRKLENFLSQKNKAYKTHLKLGDYLE-KTCRRIILFDNSFSKGTDVAIGVGVCFENG 383 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 + YR +N+ +A + + + + S+ DVIL DG Q+ + Sbjct: 384 EANKNLYRYFNL--FIDNFRHADVEYMRQTSLNYLKEWSEGVDVILADGDIAQIKAIRKS 441 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 L+++ + G+ K + EG+ + D H + ++ E Sbjct: 442 QNALNLN-----IPIFGLVKNDKHETRT---LINEEGKEIVVN-DLDVFHYLSRMQQEVD 492 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A + +K K S L I+G+GP L+++ G +RNAS+EE+ K+ + + Sbjct: 493 RFAKWAYHRKNTKNMLNSKLLKIKGLGPHTLTKLIEHFGSYTKIRNASLEELEKI--VKK 550 Query: 599 GLAEKIFWSL 608 +A I L Sbjct: 551 EIALAIKEQL 560 >UniRef50_D1J7M2 UvrABC system protein C (UvrC protein, Excinuclease ABC subunit C) n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7M2_MYCHP Length = 568 Score = 366 bits (941), Expect = 1e-99, Method: Composition-based stats. Identities = 134/612 (21%), Positives = 236/612 (38%), Gaps = 66/612 (10%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQI 63 + + +K V +PGVY + G +IYVGKAKDLK R+ YF S KTE + +I Sbjct: 2 INKEIIIKNVPHKPGVYLWKNKNGNIIYVGKAKDLKNRMLQYFDIKMQNSFKTEKMRQEI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH---RG 120 + +E EA + E I Y+P YNVL S+P+I + + +L + Sbjct: 62 ADFSTIILSSEREAFIEERKLIDFYKPFYNVLFPTRDSFPYIRVKLLSTNKLIIDIKNHY 121 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 K Y+GP P+ + + L + + + + + Sbjct: 122 KKEPNSIYYGPIPDNKNFKPLIRYLNHL--LLSKDGIIIEKQ------------------ 161 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV- 239 S E Q+ E + + D L ++ A + FE+A R DQI + Sbjct: 162 ---SPEFAKQRFEQAKSIMKFGPD-FKRNLKQKINEAIEMNLFEQA-RFYDQILDLLNYN 216 Query: 240 -TEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 + T D+DV G V+V+ + G ++ S Y ++ Sbjct: 217 KQSQNIFIKTIKDIDVFGFYQYQNYMMVNVMIYKNGSLVNSYDYIFEIILNE------HE 270 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 FV QF + LP +I++ + + V + +A Sbjct: 271 FVNQFIDEFYVNNQLPAQIIIPLKYYELGGFDYND--------KVSAPLNKLNKNLIDIA 322 Query: 359 RTNA----ATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVV 414 NA + + LS+Q+ ++ L S L + +R+ FD S V Sbjct: 323 IENASNNIEQKIKNYLSKQTKDNEIFNKLCSYLNV-YAERIVLFDNSFLSNTNEVIGAAC 381 Query: 415 -FDANGPLRAEYRRYNIT-GITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 F + YR YN+ + D M Q + D DV+++DG GQ+ Sbjct: 382 YFKNGQAFKKFYRFYNLKLNLLRNADVEYMQQT---SFNYLKDLGDQVDVVIVDGSIGQI 438 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + K A L+++ L G+ K + + + + D +++ Sbjct: 439 NEVKKSMAFLNLN-----IPLFGLVKNSKHETQK---LIDSNNNEIKID-DQDVFNLLSR 489 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 ++ E A + +K+ K ++ L I+G+G K + L+ Y G + ++ AS +EI+K Sbjct: 490 MQTEVDRFAKYRYNQKQRKSMLSNPLLKIKGIGFKTIEKLINYFGSYKKIQQASFDEISK 549 Query: 593 VPGISQGLAEKI 604 V ++ +A+ I Sbjct: 550 VA--NKKVAKLI 559 >UniRef50_B8DRE6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRE6_DESVM Length = 762 Score = 359 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 136/322 (42%), Positives = 192/322 (59%), Gaps = 12/322 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR------SNLASRKTEALVA 61 K + + PGVY DA G ++YVGKAK L+KR++SYFR + KT A++ Sbjct: 3 KPVMSNIPDTPGVYLYKDAAGRILYVGKAKHLRKRIASYFREAAEGAPPPQTPKTLAMLR 62 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRG 120 Q +++D T TE EALLLE + IK ++PRYN++LRDDK Y L +PRL + R Sbjct: 63 QAERLDTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLQKKHPYPRLDIVRA 122 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + +Y+GPF + A R T + + FP+R+C + NR RPCL + IG+CL PCV Sbjct: 123 VRRDGAQYYGPFTSAGAARATWKAIHRAFPLRRCTDRALENRVRPCLYHFIGQCLAPCVF 182 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V EEYA V+ V + LSG+ +++ QL + METAS+ LEFE AA +RDQI+AV R Sbjct: 183 D-VPREEYAALVQRVEMLLSGRSGELVGQLRTEMETASEALEFERAAALRDQIRAVERTV 241 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q V G DLDV+G+ G + VLF+RQG VL R++ G E E++ +F Sbjct: 242 ERQAAVLPGGGDLDVVGIVDTGGGLGLGVLFVRQGAVLDGRAFLWPGLGFEEAPELLLSF 301 Query: 300 VGQFYLQGSQMRTLPGEILLDF 321 +GQFY S +P I++ + Sbjct: 302 LGQFYGPHSA---IPSRIVVPW 320 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 100/358 (27%), Positives = 145/358 (40%), Gaps = 76/358 (21%) Query: 318 LLDFNLSDKTL--LADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQST 375 + +D +L + ++L++L G + + + R + +A NA +++ T Sbjct: 409 IPPQAATDMSLRAIEETLADLRGGPVRIVAPRSPEENRLVDMAAANAREH-----ARRET 463 Query: 376 VHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIT--- 431 LA L L V+R+E DISHT G T A VVF+ P+R +R Y + Sbjct: 464 EAPLPDLLARALHLSAPVRRVEAVDISHTGGRSTRAGMVVFEDGRPVRDAWRAYALDRPA 523 Query: 432 ---------------GITPGD------------------------------------DYA 440 P D DYA Sbjct: 524 DGSADLPDTNAPNGLSDGPPDGVFADLPEGEMAGHAGEVSETSAEHTSQPPTFTAGDDYA 583 Query: 441 AMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK-- 498 A+ RRR D++LIDGG+GQL+ E + L +AK Sbjct: 584 ALAGWARRRIASG---PPWADLVLIDGGRGQLSAVHRAVREAG---GEGLFALASIAKAR 637 Query: 499 ----GADRKAGL--ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKV 552 ADR+AG + +F L +P L +QH+RD HD AIG HR+ RA Sbjct: 638 TEDGRADRRAGNVADRIFLPGRTNPLPLRDGAPELLFLQHVRDAVHDFAIGRHRRARAGA 697 Query: 553 KNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 T L+ +EGVGPK ++L G L +R AS +E+A+VPGI A +I LK Sbjct: 698 ALTGELQRVEGVGPKTARLLWDRFGTLAAMRAASEKELAEVPGIGPRRARQIHQRLKE 755 >UniRef50_Q313T1 UvrABC system protein C n=2 Tax=Desulfovibrio desulfuricans subsp. desulfuricans RepID=UVRC_DESDG Length = 700 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 130/328 (39%), Positives = 192/328 (58%), Gaps = 11/328 (3%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVA 61 DQ D + + + PGVY D G V+YVGKAK L++R++SYFR + KT A++ Sbjct: 2 DQID----ISCIPTTPGVYLYKDPAGKVVYVGKAKHLRRRVASYFRDIQRHTPKTRAMLR 57 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 ++ T TE EALLLE + IK ++PRYN+LLRDDK Y L+ PRL + R Sbjct: 58 SAATVETLSTTTEKEALLLEASLIKKHRPRYNILLRDDKQYVLFQLTRKHHWPRLVLTRK 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + YFGPF +G A R+T ++ K+FP+R+C + +RNR RPCL + + +C GPCV Sbjct: 118 VRKDGSAYFGPFTSGQAARQTWKVIHKVFPLRRCSDKAFRNRVRPCLYHFMNQCPGPCVL 177 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V + Y Q V V + L+G+ +++ L + M+ AS LEFEEAA +RDQ+QAV R Sbjct: 178 D-VDRDGYMQMVRKVEMLLAGRSTELIDMLRADMQAASDALEFEEAALLRDQLQAVERTV 236 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q V D+D +G+A G + VLFIR+ +L R++F E EV+ +F Sbjct: 237 ERQAAVLPGVHDMDAVGLAEAGGGLALSVLFIRRSVLLDKRNFFWSGLTLEEGPEVLLSF 296 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKT 327 + Q+Y GS +P IL+ +++ + Sbjct: 297 LTQYYGPGS---FIPPRILVPWDIRTED 321 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 22/293 (7%) Query: 328 LLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVL 387 +A+ L+EL G + V + + +A NA ++ +A+ L Sbjct: 415 AVAEMLTELRGGPVRVLPPRNATDNQLVTMATENARED-----ARAEKRPDVAGVIAAKL 469 Query: 388 KLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI-TGITPGDDYAAMNQV 445 + R+E D+SHT G T VVF+ P R +YR Y GDD + Sbjct: 470 GMSAPPVRIEAVDVSHTGGSNTRVGVVVFENGTPARDQYRTYAFADDEAGGDDTGVLALW 529 Query: 446 LRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 RR PD++L+DGG+GQLA + +AK + + G Sbjct: 530 AVRRVHSG---PPWPDLLLVDGGRGQLAAVMTALESAGAGG---LFAVASIAKARNEETG 583 Query: 506 L---------ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTS 556 + +F + SP L +QH+RD HD+AIG HR+ R+ + Sbjct: 584 RADRRAGNLADRIFLPGRSNPVNFKSGSPELLFLQHVRDTVHDYAIGRHRRARSGAALSG 643 Query: 557 SLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 L+ ++G+GP ++L ++ LQ + +A + +A +PGI + A I LK Sbjct: 644 ELQRMQGIGPATARLLWEHFSSLQEMVDAGEKGLAALPGIGKAKAAVIHEGLK 696 >UniRef50_Q72DX8 UvrABC system protein C n=3 Tax=Desulfovibrio vulgaris RepID=UVRC_DESVH Length = 688 Score = 358 bits (918), Expect = 6e-97, Method: Composition-based stats. Identities = 136/329 (41%), Positives = 196/329 (59%), Gaps = 7/329 (2%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQI 66 + L T+ PGVY D G +IYVGKA+ L++R++SYFR + + KT A++ I Sbjct: 3 RPDLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTI 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAK 125 D T TE EALLLE + IK ++PRYN++LRDDK Y + + +PRL + R A+ Sbjct: 63 DTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDD 122 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGPF + A RET + + FP+R+C + + NR R CL + +G+CLGPCV V Sbjct: 123 GRYFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCV-NEVPS 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-F 244 E YA +E V L LSG+ +++ L + ME ASQ L+FE AA +RD+I+A+ R E+Q Sbjct: 182 ETYAALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAA 241 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 V G DLDV+GV + VLF+RQG +L RS+F G E E++ +F+GQFY Sbjct: 242 VLPGGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFY 301 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSL 333 + T+P I++ + + D+L Sbjct: 302 GPQA---TIPPRIVVPWLPDEDGETGDAL 327 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 125/279 (44%), Gaps = 21/279 (7%) Query: 328 LLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVL 387 +L +L+ L G + + R + +A +NA + T Q L LA L Sbjct: 390 MLETALAALRGGIVRIALPRNPAENRLVDMAMSNAR---EEARRKADTPLQDL--LARAL 444 Query: 388 KLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVL 446 L R+E D+SHT G T VVF+ P YR Y GDDY + Sbjct: 445 HLAGPPHRIEAVDVSHTGGRNTRVGMVVFEDGKPFPEAYRTYAFEDGD-GDDYGTLAAWA 503 Query: 447 RRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK------GA 500 RR PD++L+DGG+GQLA F E + + +AK A Sbjct: 504 GRRVESG---PPWPDLLLVDGGRGQLAAVVRAFEECGMGAA---FAVASIAKARTEEGRA 557 Query: 501 DRKAGL--ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSL 558 DR+AG + +F L +P L +QH+RD HD++IG HR+ RA T L Sbjct: 558 DRRAGNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGEL 617 Query: 559 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 + +EG+GP + L + LQ + +A VE +A VPG+ Sbjct: 618 QRVEGIGPATARALWERFDSLQAMADAGVEGLAAVPGVG 656 >UniRef50_Q0RH00 DNA excision repair enzyme UvrABC; UvrC subunit n=1 Tax=Frankia alni ACN14a RepID=Q0RH00_FRAAA Length = 802 Score = 356 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 180/321 (56%), Gaps = 7/321 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF + +T+ + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFADLHTLHPRTQHM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V +D TV TE EAL LE+ +IK + PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VQAASAVDWTVVSTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V E + + V+ F+SG+ + L +L M+ A+ E+E AAR+RD A Sbjct: 181 APCV-GRVDAETHREIVDDFCDFMSGQTGRYLRRLEQEMQQAASAQEYERAARLRDDAGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DV+ A D A V + ++R G+V G R + ++ Sbjct: 240 LRRAIEKQAVVLPDGTDADVVAFAEDELEAAVAIFYVRAGRVRGQRGWVVDKLDEVTTAD 299 Query: 295 VVETFVGQFYLQGSQMRTLPG 315 +VE F+ Q YL+G+ + T Sbjct: 300 LVEQFLTQEYLEGASLTTAVP 320 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 162/369 (43%), Gaps = 72/369 (19%) Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 Q +P EIL+ D +A+ L G ++ ++ RGD+ L+ NA A Sbjct: 376 SDPQGAGIPREILVPALPPDADAVAELLGVARGGRVEIRVPRRGDKRTLLETVERNARQA 435 Query: 366 LTSKLSQQST----VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 L +++++ + L L L+LP+ R+EC+D+S+ G VAS VVF+ Sbjct: 436 LALHRTKRASDLTARSRALAELQEALELPDAPLRIECYDVSNIQGTNVVASMVVFEDGLA 495 Query: 421 LRAEYRRYNI------------TGITPGDDYAAMNQVLRRRYGKAIDDSK---------- 458 ++EYRR++I DD A+M + + RR+ + + + Sbjct: 496 RKSEYRRFSIRGGAGGAGREHGRADAGQDDVASMYETIHRRFSRYLAERSRTGELVDIVD 555 Query: 459 ---------------------------------------IPDVILIDGGKGQLAQAKNVF 479 P+++++DGG Q+A A Sbjct: 556 SAEDLAADTGVRDGRGRAVTPGAAQPIDPDTGRPRRFAYPPNLVVVDGGPPQVAAAARAL 615 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL + L G+AK LE ++ E LP S AL+++Q +RDE+H Sbjct: 616 DELGIDTGPGGVALCGLAK------RLEEVWLPDSAEPVILPRTSEALYLLQRVRDEAHR 669 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR+KR+ TS+L+ + G+G RR+ LL+ G + +R AS EEIA+VPGI Sbjct: 670 FAITYHRQKRSAAMVTSALDDVPGLGETRRKALLRQFGSVAKVRAASAEEIAQVPGIGPR 729 Query: 600 LAEKIFWSL 608 A I +L Sbjct: 730 TAAAILTAL 738 >UniRef50_C1PCU9 Excinuclease ABC C subunit domain protein n=1 Tax=Bacillus coagulans 36D1 RepID=C1PCU9_BACCO Length = 361 Score = 356 bits (913), Expect = 2e-96, Method: Composition-based stats. Identities = 135/364 (37%), Positives = 197/364 (54%), Gaps = 17/364 (4%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDV 68 L + +PG Y M G +IYVGKAK LK R+ SYF + KT LV +I ++ Sbjct: 7 HKLSLLPEEPGCYLMKSREGEIIYVGKAKKLKNRVRSYFTGS-HDEKTTQLVGEIFDLEW 65 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEY 128 VT T TEAL+LE N IK Y+P+YN++L+DDKSYPFI ++ + HP+L + R A KG+Y Sbjct: 66 IVTATNTEALVLEMNLIKQYRPKYNIMLKDDKSYPFIKITDERHPQLILTREAGRDKGKY 125 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPFPN A ET +L +++P+R+C + +RPCL YQ+G C+G C V EEEY Sbjct: 126 FGPFPNARAAAETKKVLDRLYPLRRC----PESSTRPCLYYQLGLCIGTCAR-EVGEEEY 180 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSN 247 +Q+ + F G VL + M A++ L+FE+A ++++QI + E Q V N Sbjct: 181 KEQIRKIVHFFHGGYRAVLKDMKKEMLQAAKKLDFEKAEQLKEQIMQIEVTMEDQNIVLN 240 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D+ G A G CVHV ++R G+++ F + G E F+ FY G Sbjct: 241 DPVSRDIFGFAVQDGFMCVHVFYMRDGRIIEREVIFRPI-GSKEPKRAFLDFLQHFY--G 297 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 TLP E+L+ + + +E+ + RG + ++LA NA AL Sbjct: 298 ESGNTLPKEMLIPAAVGKEA------AEICVSA-RIVQPKRGQKKEMVQLATKNARIALE 350 Query: 368 SKLS 371 K+S Sbjct: 351 EKVS 354 >UniRef50_C5ADA8 UvrABC system protein C (Protein uvrC) n=4 Tax=Proteobacteria RepID=C5ADA8_BURGB Length = 756 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 128/281 (45%), Positives = 189/281 (67%), Gaps = 2/281 (0%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F+ K L + PGVYR YDA G+V+YVGKA++LKKR+SSYF S + +V +I Sbjct: 29 FEPKPVLAQLPHLPGVYRYYDAAGSVLYVGKARNLKKRVSSYFTKTQLSPRIAMMVTRIA 88 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RGA Sbjct: 89 RIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHAFPRMAYYRGAVDR 148 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV G + Sbjct: 149 KNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCV-GAID 207 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +YA+ V FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ V +Q Sbjct: 208 AADYARDVANASRFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQA 267 Query: 245 V-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP 284 + + D+D++ V G CV++ +R G+ LG ++YFP Sbjct: 268 IEVGSESDVDILAVVAHGGRVCVNLAMVRGGRHLGDKAYFP 308 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 157/344 (45%), Positives = 200/344 (58%), Gaps = 37/344 (10%) Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 EV+E F+ Q YL +P +++ L+++ L+ D L E AG K+ V +P+G + Sbjct: 422 EVLEAFIAQHYLGN----RVPPVLVVSHALANRELI-DLLVEQAGHKVAVLRQPQGQKRA 476 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQTV 409 +L +A NA AL LS+Q + R ALA VL R+ECFDISHTMGE T Sbjct: 477 WLAMAEQNARLALARLLSEQGSQQARTRALAEVLGFEADDLAQLRIECFDISHTMGEATQ 536 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------- 458 ASCVVF + EYRRYNITGITPGDDYAAM QVL RRY K ++ + Sbjct: 537 ASCVVFHHHKMQSGEYRRYNITGITPGDDYAAMRQVLMRRYEKMVEQAGEAAAADAQAGI 596 Query: 459 -------------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 +P+++LIDGGKGQ+ A+ VF EL + +L+GVAKG RK G Sbjct: 597 DGDATRASASAALLPNIVLIDGGKGQVEVARQVFTELGLDCS----MLVGVAKGEGRKVG 652 Query: 506 LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVG 565 LETL F L +S AL ++ IRDE+H AI G R KRAK + TS LE +EGVG Sbjct: 653 LETLIFADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVG 712 Query: 566 PKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 KRRQ LL GGL+G+ ASVEE+A V GIS LAE+I+ L Sbjct: 713 AKRRQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYRQLH 756 >UniRef50_A3NXK5 UvrABC system protein C n=59 Tax=Proteobacteria RepID=UVRC_BURP0 Length = 747 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 131/286 (45%), Positives = 193/286 (67%), Gaps = 2/286 (0%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 +F+ K L + PGVYR YDA V+YVGKA+DLKKR+SSYF S + ++ +I Sbjct: 10 RFEPKPILAQLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRI 69 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RGA Sbjct: 70 ARIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHRFPRMAYYRGAVD 129 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV G + Sbjct: 130 KKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCV-GAI 188 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 EE+YA+ V+ FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ +V +Q Sbjct: 189 GEEDYARDVDNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQ 248 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPG 288 + GD D+D++ V G CV++ +R G+ LG ++YFP Sbjct: 249 AIDVGGDSDVDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 337 bits (866), Expect = 5e-91, Method: Composition-based stats. Identities = 152/344 (44%), Positives = 200/344 (58%), Gaps = 37/344 (10%) Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 EV+E F+ Q YL +P +++ +++ L+ D L E AG K+ V +P+G + Sbjct: 413 EVLEAFIAQHYLGN----RVPPVLVVSHAPANRELI-DLLVEQAGHKVAVVRQPQGQKRA 467 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQTV 409 +L +A NA AL LS+Q + R +LA VL R+ECFDISHTMGE T Sbjct: 468 WLTMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQ 527 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI--------------- 454 ASCVV+ + +EYRRYNI GITPGDDYAAM QVL RRY K + Sbjct: 528 ASCVVYHHHRMQSSEYRRYNIAGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587 Query: 455 ---------DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 ++P+V+LIDGG+GQ+ A+ VF+EL + +L+GVAKG RK G Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDIS----MLVGVAKGEGRKVG 643 Query: 506 LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVG 565 LETL F L +S AL ++ IRDE+H AI G R KRAK + TS LE +EGVG Sbjct: 644 LETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVG 703 Query: 566 PKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 KRRQ LL GGL+G+ ASV+E+A V GIS+ LAE+I+ L Sbjct: 704 AKRRQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747 >UniRef50_B8DGB7 UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C) n=18 Tax=Listeria RepID=B8DGB7_LISMH Length = 366 Score = 347 bits (892), Expect = 5e-94, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 200/380 (52%), Gaps = 20/380 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M D+ K L + PG Y D ++Y+GK+K LK R+ SYF S KT LV Sbjct: 1 MDDKLQKK--LTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSKQI-GKTARLV 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 QI+ +++ +T +E EALLLE I+ YQP +N+ L++ SYP+I ++ + +P + + Sbjct: 58 RQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFE 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 K YFGP+P ++ R+T+ L++K+FP+ +C+ RPCL Y +G CLGPC + Sbjct: 118 VKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPC-Q 172 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + Y +Q+ + FL G V +L M TA++NLEFE AA +RD+I A+ Sbjct: 173 AEIDPAVYKKQIHKISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETI 232 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + G + D+IG V V F+R G + GS+ + ++ L E + F Sbjct: 233 EKQHIIFPGLKNRDIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKF 290 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY + ++ P E+L+ L DK LL + L + +G + + ++LA Sbjct: 291 LNQFYEDPNNIQ--PKELLIAEKL-DKKLLNEPLRKAC------LFPQKGGKKKQIELAI 341 Query: 360 TNAATALTSKLSQQSTVHQR 379 NA +A + + ++ Sbjct: 342 ENAKSAYIAYAKMKEYDFEK 361 >UniRef50_A0AGX5 Complete genome n=3 Tax=Listeria RepID=A0AGX5_LISW6 Length = 366 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 18/370 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + L + PG Y D ++Y+GK+K LK R+ SYF S KT LV QI+ Sbjct: 4 KLQTKLTLLPESPGCYIYKDENNEILYIGKSKCLKNRVKSYFHSKQI-GKTARLVRQIRD 62 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +++ +T +E EALLLE I+ YQP +N+ L++ SYP+I ++ + +P + + AK Sbjct: 63 LELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFEAKQDG 122 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+P Y+ R+T+ L+QK+FP+ +C+ RPCL Y +G CLGPC+ + Sbjct: 123 AHYFGPYPGRYSARQTVDLIQKLFPLCRCDG----KPGRPCLYYHLGLCLGPCLR-EIDP 177 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y Q+ + FL G V ++ + M+ A+ LEFE AA RD++ A+ EKQ + Sbjct: 178 AVYKAQIHKISRFLEGDVKPVKKKIQAIMQEATDKLEFERAAEQRDKLHAINETIEKQHI 237 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 G + D+IG V V F+R G + G + + +V L E + F+ QFY Sbjct: 238 IFPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGRKWHVFQV--EKSLQEDLAHFINQFY 295 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + ++ P E+L+ L DK LA+ L + +G + + + LA NA + Sbjct: 296 EDPNNIQ--PKELLIAEKL-DKLSLAEPLRKAC------VFPQKGGKKKQINLANENAKS 346 Query: 365 ALTSKLSQQS 374 + + Sbjct: 347 TYIAYAKMKE 356 >UniRef50_D1VGT9 Excinuclease ABC, C subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VGT9_9ACTO Length = 835 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 177/319 (55%), Gaps = 7/319 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF A +T + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDPHGRVLYVGKAKNLRARLNNYFTDVFALHPRTRTM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+ +IK Y PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VTTASSVEWTVVSTEVEALALEYTWIKEYDPRFNVRYRDDKSYPSLAVTLQEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSTGVFKRAGQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V+ +E+ Q V+ F++G+ + L +L M A+ ++E AAR+RD A Sbjct: 181 APCV-GRVTPDEHRQIVDDFCDFMAGQTGRFLRRLEDEMRAAADAQDYERAARLRDDAGA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DV+ A D A V V ++R G+V G R + ++ Sbjct: 240 LRRAMEKQAVVLADGTDADVVAFAQDELEAAVQVFYVRGGRVRGQRGWVVDKLADVTTAD 299 Query: 295 VVETFVGQFYLQGSQMRTL 313 +VE F+ Q YL + + Sbjct: 300 LVEQFLTQEYLGDKDLGDI 318 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 60/348 (17%) Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 G + +P E+L+ +D + + L+ G ++ V+ RGD+ ++ NA AL Sbjct: 368 GGRHADIPREVLVPELPTDADAVGELLARYRGGRVEVRVPQRGDKRTLMETVERNAKQAL 427 Query: 367 TSKLSQQSTVHQR----LTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPL 421 +++++ L L L L E R+ECFD+SHT G+ VAS VVF+ Sbjct: 428 VLHRTKRASDLTARSLALAELQETLGLAEAPLRIECFDVSHTQGQDVVASMVVFEDGVAR 487 Query: 422 RAEYRRYNITGI-----TPGDDYAAMNQVLRRRYGKAIDD-------------------- 456 ++EYRR+ I G DD A+M + + RR+ + + + Sbjct: 488 KSEYRRFTIRGAARRDGNEQDDTASMYETVSRRFSRYLAELSRTGELPGTDQDAPADGSA 547 Query: 457 ------------------------SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL 492 + P+++++DGG Q+A A A+L + Sbjct: 548 GAAAGAEGTDGPEPLVVDGRPRRFAYPPNLVVVDGGPPQVAAAARALADLGIDAGPGGVA 607 Query: 493 LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKV 552 L G+AK LE ++ + + LP S AL+++Q +RDE+H AI HR+KR+ Sbjct: 608 LCGLAK------RLEEVWLPDDPDPVILPRTSEALYLLQRVRDEAHRFAITFHRQKRSAS 661 Query: 553 KNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 +S L+ + G+G RR+ LLK G + LR AS EEI+ VPGI Sbjct: 662 MTSSLLDGVPGLGETRRKALLKTFGSVAKLRAASAEEISTVPGIGPRT 709 >UniRef50_C4XSA3 UvrABC system protein C n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSA3_DESMR Length = 691 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 184/320 (57%), Gaps = 7/320 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQIDVTV 70 K PGVY M A G ++YVGKAK+L+ RLSSYFR++ + KT ALVA+++ +DV + Sbjct: 7 KNFPMSPGVYLMKGARGKILYVGKAKNLRSRLSSYFRNDAGLTVKTAALVAKVEGVDVLL 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYF 129 T +E EALLLE + IK ++PRYN++L+DDK+Y L PRLA R + YF Sbjct: 67 TASEKEALLLESSLIKKHRPRYNIVLKDDKNYILFKLDKRSPFPRLAFTRRVERDGAAYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + A R T L + FP+R+C + NR RPCL + IG+CL PCV V EYA Sbjct: 127 GPFTSAAAARATWKELGRAFPLRKCGDRAMANRVRPCLYHSIGQCLAPCVL-AVDPGEYA 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNT 248 V V FL+G+ +VL + ME A+++L FE+AA +RD ++A+++ E Q V Sbjct: 186 ALVRRVEAFLTGRSAEVLRAVEHEMEQAAESLAFEKAAGLRDLLRAMKKTVEGQATVLTR 245 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D+DV+G+A + VLF+RQG++L +++F E T + QFY Sbjct: 246 LIDIDVVGLAAVPTGVGLCVLFVRQGRLLDRKTFFFPGVTADEARGAAVTAMLQFY---R 302 Query: 309 QMRTLPGEILLDFNLSDKTL 328 +P I++ L+ Sbjct: 303 PESFIPPRIVVPDVLTAAEA 322 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 122/282 (43%), Gaps = 11/282 (3%) Query: 321 FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRL 380 ++D LA+ L E G + + + + + L A A ++ + ++ L Sbjct: 404 EAVADSLALAEILEERRGGALRLGSPRGREERKLL--AMAEANAGRAAEEAAKAAERDLL 461 Query: 381 TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG-DDY 439 ALA L + R+E D+SH G+ VVF+ P +++YR Y DDY Sbjct: 462 PALAKAFGLARLSRIEAVDVSHLGGKGVRVGLVVFEEGAPRKSDYRSYGFPEAEGSSDDY 521 Query: 440 AAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKG 499 A+ +A PD++LIDGGKGQLA + + + L +AKG Sbjct: 522 LALAAFAA---KRAEAGPPWPDLLLIDGGKGQLAAVERALGQ---AGAGGAFALASIAKG 575 Query: 500 ADRKAGLET--LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 R +F L P SP L +Q +RD HD++IG R R K S Sbjct: 576 DRRSQNEMEDVIFVPGRKNPLGLRPGSPELLFLQRVRDTVHDYSIGRQRLARKKTGLRSD 635 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 L + G+GPK ++L + G +R ASVE + + G+ Sbjct: 636 LLALPGIGPKTARLLWEAFGSTAAMRAASVEAVRERTGLGPA 677 >UniRef50_D1NSJ5 Excinuclease ABC subunit C n=3 Tax=Actinobacteridae RepID=D1NSJ5_9BIFI Length = 841 Score = 337 bits (865), Expect = 7e-91, Method: Composition-based stats. Identities = 119/336 (35%), Positives = 190/336 (56%), Gaps = 10/336 (2%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVA 61 D F K + ++PGVY+ D G VIYVGKAK+L+ RLS+YF+ + +T+ +V Sbjct: 45 DLFRPKT--SQIPAEPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHQLHPRTQTMVL 102 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 + ++ TV TE EAL LE+ +IK + PR+NV+ RDDK+YP++ +S G+ R + R Sbjct: 103 TARSLEWTVVGTELEALTLEYTWIKEFDPRFNVVFRDDKTYPYLAVSVGERIARTWVTRS 162 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRCLGP 177 K YFGP+ + +R++L L + FP+R C +V++ +RPCL IG+C P Sbjct: 163 RKRRDTRYFGPYAKVWDLRKSLDTLLRTFPVRTCTPAVFKKAQLTNRPCLLASIGKCSAP 222 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKD-DQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 CV G +S +++ Q V + L+G+ + L +M+ ASQ+LEFE+AAR+RDQI + Sbjct: 223 CV-GRISAQDHRQLVSQLVGVLTGRIGQSYIADLTRQMKQASQDLEFEKAARLRDQIGML 281 Query: 237 RRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 R V ++ V D D DV G+A D A VH F+R G + G R++ + +++ Sbjct: 282 RNVAQQNAVVLDQDVDADVFGIASDELEASVHAFFVRGGSIRGERNWSVERIEDVSDADL 341 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLAD 331 + + Q Y Q + + + D+++L D Sbjct: 342 LADLIVQAYSQIMHEQQTSQSVSIAAASDDQSILTD 377 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 92/361 (25%), Positives = 161/361 (44%), Gaps = 69/361 (19%) Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + + +P E+L+ + L LS + G ++++ RG + ++ A+ NA+ AL Sbjct: 473 APIAPIPREVLVPLLPTRADELERWLSSMRGSAVSIRVPQRGSKKDLMQRAQDNASQALQ 532 Query: 368 S----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGEQTVASCVVFDANGPL 421 ++S + + + +A L L E R+EC+DIS+T G VAS VVF+ Sbjct: 533 RSKMSRISDMAARTEAMNDVAQALGLAEAPLRIECYDISNTVGGAYQVASMVVFEDAMAK 592 Query: 422 RAEYRRYNITGITPG---DDYAAMNQVLRRRYG---------------KAIDDSKI---- 459 ++EYRR+ I G DD +A+ + L RR+ + + D + Sbjct: 593 KSEYRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDTGESIDNERRVRDQQASQDQ 652 Query: 460 -------------------------------PDVILIDGGKGQLAQAKNVFAELDVSWDK 488 P++I++DGG Q+ A + V Sbjct: 653 NRQSDGDDGMQSSDGPSTVQQNTDRRHFAYKPNLIVVDGGYPQVLAAAKALHDCGV---- 708 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 + + G+AK LE ++ + L S ++++Q +RDESH AI HR+ Sbjct: 709 DDVAVCGLAK------RLEEVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQA 762 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 R K S L+ I G+GP ++ LL + G ++ +R AS+E++ V G+ + A+ IF +L Sbjct: 763 RRKGALRSVLDDIPGIGPSYQKKLLAHFGSVRAMRQASLEDLEAVKGVGKAKAKSIFDAL 822 Query: 609 K 609 Sbjct: 823 H 823 >UniRef50_D2L1M6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1M6_9DELT Length = 695 Score = 337 bits (864), Expect = 8e-91, Method: Composition-based stats. Identities = 126/312 (40%), Positives = 180/312 (57%), Gaps = 7/312 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQIDVTV 70 K + PGVY M G ++YVGKAK+L+ RL SYFR + KT ALV +I+ +DV + Sbjct: 7 KNFPTSPGVYLMKGGKGKILYVGKAKNLRARLGSYFRGETGHTVKTAALVGRIEAVDVLL 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYF 129 T +E EALLLE + IK ++PRYNV+L+DDK+Y L PRLA R + YF Sbjct: 67 TASEKEALLLESSLIKKHRPRYNVVLKDDKNYILFKLDKRSDFPRLAFTRRVERDGATYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + A R T L ++FP+R+C + NR RPCL Y IG+CL PCV V +EY Sbjct: 127 GPFTSAAAARTTWKELGRVFPLRKCGDRTLHNRVRPCLYYFIGQCLAPCVL-PVEPQEYM 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNT 248 V V FL+G+ ++L + ME A++ L FE+AA++RD ++A+RR E Q V Sbjct: 186 TLVRRVEAFLTGRSAEILRAVQKEMEEAAERLAFEQAAKLRDLLKAMRRTVEGQATVLTR 245 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D+DV+ +A + VLF+RQG++L +++F E V T + QFY GS Sbjct: 246 LVDMDVVNMAATEHGVGLCVLFVRQGRLLDRKTFFFPGVEAAEADAVAVTALVQFYRPGS 305 Query: 309 QMRTLPGEILLD 320 + +++ Sbjct: 306 ---FIAPRVVVP 314 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 79/276 (28%), Positives = 122/276 (44%), Gaps = 11/276 (3%) Query: 327 TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASV 386 LA+ L+E G + + + + L++A NA A + ++ L +LA Sbjct: 414 QALAEILAERRGAGVRLGPPRGREERQLLEMAAVNARRAAEE--AAKAAEGDILPSLARK 471 Query: 387 LKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP-GDDYAAMNQV 445 LP + R+E D+SH G+ VVF+ P +++YR Y + DDY A+ Sbjct: 472 FGLPALSRIEAVDVSHLGGKGVRVGMVVFEDGTPQKSDYRAYAFPELEGTSDDYLALATF 531 Query: 446 LRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADR--K 503 +R A PD++LIDGGKGQL E V+ L +AKG R Sbjct: 532 AAKR---AASGPPWPDLLLIDGGKGQLEAVSRSLTEAGVAGA---FALASIAKGERRSQN 585 Query: 504 AGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEG 563 + ++ SL SP L +Q +RD HD +IG R+ R S++ + G Sbjct: 586 EMDDVIYVPGRKNPLSLRSGSPELLFLQRVRDTVHDFSIGRQRRARNTASLQSTVLELPG 645 Query: 564 VGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 VGPK ++L + G + +R A EI G+ Sbjct: 646 VGPKTARLLWEAFGSVTAMRAAGAGEIMAKTGLGPR 681 >UniRef50_B2S367 UvrABC system protein C n=4 Tax=Treponema RepID=UVRC_TREPS Length = 691 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 115/331 (34%), Positives = 163/331 (49%), Gaps = 14/331 (4%) Query: 15 TSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTE 74 S GVY D G VIYVGKAK L+ RL+SYFR KT L+++ ++ T E Sbjct: 19 PSTSGVYLWKDVHGVVIYVGKAKSLRTRLTSYFRC-RHDPKTRVLMSRAAALEYLQTQHE 77 Query: 75 TEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPN 134 EALLLE+ IK + PRYN+ L+D K+YP + L+ + PR+ R YFGPFP+ Sbjct: 78 YEALLLENTLIKKHTPRYNICLKDGKTYPLLKLTCEPFPRIFRTRQFCQDGARYFGPFPD 137 Query: 135 GYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEY 194 + L L+ + + IR C R R PCL Y + RC PC G VS Y + + Sbjct: 138 VQILDSFLKLILRTYKIRTCT--TLRKRKNPCLYYHLKRCDAPCC-GWVSPRTYQKDIHE 194 Query: 195 VRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDL-D 253 + L L G D + +L RM+ A + FE AARIRD IQA+R +T K V + + D Sbjct: 195 ITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLVQDMDERARD 254 Query: 254 VIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTL 313 I + + VL +R GK+ G + + E E++ F+ +Y + + Sbjct: 255 YIAWSSTGAIVTFAVLRMRGGKLNGRELFRTRSLKNEE--EILSEFLITYYSDHT----I 308 Query: 314 PGEILLDFNLSDKTLLADSLSELAGRKINVQ 344 P + + S L LS AG + V Sbjct: 309 PPHLFV---HSSAGLAEHWLSHKAGTQCTVT 336 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 85/260 (32%), Positives = 125/260 (48%), Gaps = 14/260 (5%) Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQT 408 L +A+ NA +T L + L L L L + +E FDISH G+ T Sbjct: 412 HHRAILAMAQLNAHEDITRYLKNRGA-DDALKELQKQLHLARIPTLIEGFDISHLGGKYT 470 Query: 409 VASCVVFDANGPLRAEYRRYNITG-ITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDG 467 VAS + F P YR +N+ T DD+A+M + + RRY + +PD+IL+DG Sbjct: 471 VASLICFKNGAPDTKNYRLFNLRAHDTRIDDFASMREAIARRYTHTPEGYTLPDLILVDG 530 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G G ++ A++V L +S L+G+AK A E LF L +PAL Sbjct: 531 GIGHVSAAQHVLDALGLS-----IPLVGLAKRA------EELFIPNSPTPLVLDRRNPAL 579 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 H++Q IRDE+H AI +R R K + S E + VG R LL + G + L++A+ Sbjct: 580 HMLQRIRDEAHRFAITRNRHLRTKKELVLSFERLPHVGKVRAHRLLAHFGSFRSLQSATP 639 Query: 588 EEIAKVPGISQGLAEKIFWS 607 ++IA I A I + Sbjct: 640 QDIATAIHIPLTQAHTILHA 659 >UniRef50_C2CW30 Excinuclease ABC subunit C n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CW30_GARVA Length = 749 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 124/412 (30%), Positives = 206/412 (50%), Gaps = 35/412 (8%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVA 61 D F K + +QPGVY+ D G VIYVGKAK L+ RLS+YF+ N +T+++V Sbjct: 61 DLFRPKT--SDIPNQPGVYKWRDEKGKVIYVGKAKSLRNRLSNYFQPLNQLHPRTQSMVL 118 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 + ++ TV +TE EAL LE+ +IK + PR+NV+ +DDK+YP++ +S D PR+ + R Sbjct: 119 TARSLEWTVVNTELEALTLEYTWIKEFNPRFNVVFKDDKTYPYLAVSVNDDFPRVWITRN 178 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRCLGP 177 YFGP+ + +R +L L K FP+R C SV+ RPCL IG+C P Sbjct: 179 RNSKSTRYFGPYAKVWQLRHSLDSLLKTFPVRTCRQSVFVKAHKTGRPCLLAAIGKCSAP 238 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKD-DQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 C+ V + + VE + L+G D + L M+ +S NL+FE AA+IRD+I Sbjct: 239 CI-AKVDRKTHRHNVEQLVGVLTGSIGDSYINDLTREMKESSDNLDFENAAKIRDKINIF 297 Query: 237 RRVTEK-QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 + V ++ V + + DV G + D+ ACVH F+R+G + G +++ + +++ Sbjct: 298 KIVMQQNSVVFDENVEADVFGFSGDSLEACVHAFFVREGLLRGEKNWQVERSEDISNADI 357 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + + + Y + L DSL ++ + +Q +++Y+ Sbjct: 358 IANLLMRVYSEYESNNNL--------------QYEDSL-KIEQSRNALQIDLENTKSKYI 402 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLK-LPEVKR--MECFDISHTM 404 A +K +++ Q T +L + + R + F+IS Sbjct: 403 DSAYR-------AKTTKERKKRQESTGRGDLLDPITPIPREIIIPFEISQNQ 447 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 99/331 (29%), Positives = 165/331 (49%), Gaps = 39/331 (11%) Query: 308 SQMRTLPGEILLDFNLSDK--TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P EI++ F +S L + LS+L G K++++ RGD+ + A NA + Sbjct: 428 DPITPIPREIIIPFEISQNQCENLENWLSKLRGSKVSIKVPERGDKRNLMNQANDNAKQS 487 Query: 366 L----TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGEQTVASCVVFDANG 419 L +S++S + +A L + E R+EC+DIS+T GE VAS VVF+ Sbjct: 488 LMRLKSSRISSLDARSSAMNEVAEALGMSESPLRIECYDISNTVNGEYQVASMVVFEDGI 547 Query: 420 PLRAEYRRYNITGITPG---DDYAAMNQVLRRRY------------------GKAIDDSK 458 +EYRR++I G DD +A+ + + RR+ K + Sbjct: 548 AKPSEYRRFSIKGSDGNGKLDDLSALYETISRRFKHTSSGDVDDDYGENLEKSKYKKFAY 607 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 P++I++DGG+ Q A+ + + + ++ G+AK LE ++ Sbjct: 608 TPNLIVVDGGREQARAAQKAMIDCGIK----NIVVCGLAKK------LEEVWLPNNEYPI 657 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 L S L+++Q RDESH AI HR+KR + SSL++I G+G ++ LL G Sbjct: 658 ILKRSSQGLYLLQRARDESHRFAITYHRQKRRRAMLNSSLDSIPGIGEFYKKRLLSVFGS 717 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ L++ASV+++ KV GI Q A+ I+ SL Sbjct: 718 VKKLKDASVDDLQKVSGIGQAKAKSIYESLH 748 >UniRef50_A8GXA7 Excinuclease ABC subunit C n=2 Tax=Rickettsia bellii RepID=A8GXA7_RICB8 Length = 356 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 126/355 (35%), Positives = 195/355 (54%), Gaps = 13/355 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K L V + PG+Y MY++ +IY+GKAK+LKKRL +Y+ N + +V Q+ + Sbjct: 6 IKKLLPLVPTLPGIYLMYNSDKEIIYIGKAKNLKKRL-NYYSKNNLRGRIARMVHQVYLV 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAK 125 + VT +E+EA LLE IK +QPR+N+LLR DKS +I L S P L Sbjct: 65 EYKVTISESEAFLLETQLIKQHQPRFNILLRRDKSASYIKLRSDHDFPTLVKCYLDNSTG 124 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 + FGPF +G+ + + LQKIF +R C +S + R RPCL+Y+IG+C PC G +S+ Sbjct: 125 NKLFGPFTSGHQIDLIITELQKIFKLRTCSDSDFAFRKRPCLEYEIGKCFAPCT-GNISK 183 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+YA+ +E + FLS +++L +L +M+ S + FE+AA IRD+I ++ K + Sbjct: 184 EDYAELIEQINDFLSSNIEKLLGKLALKMQALSDHSHFEKAALIRDRINLIK--LSKLRI 241 Query: 246 SNTGD---DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 + D DVI + D + VL R G+ G ++Y P +EV+E+F+GQ Sbjct: 242 GKQYEGIIDADVIVI-RDDSRFQIKVLLYRGGQKWGEQNYSPIYNQTNTKAEVLESFIGQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 FY Q R EI+++ + + + SL +L K RG +A+ L+ Sbjct: 301 FY----QTRKPAKEIIINVPIQNSEPIISSLKKLYNIKTKFIVPKRGSKAQILRD 351 >UniRef50_C5J756 Excinuclease ABC subunit C n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J756_MYCCR Length = 514 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 126/556 (22%), Positives = 224/556 (40%), Gaps = 67/556 (12%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 + Q GVYR YD ++YVGK+K++ +R+ Y ++ S KT L+ + I T+ Sbjct: 12 NLPKQAGVYRFYDDQKRLLYVGKSKNIYERIHQYATGSINSYKTGKLLQETVDIQYTIVA 71 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF--G 130 ETEAL+LE I LYQP+YN+ L+DDK YP+I + D +YF G Sbjct: 72 NETEALVLEKRLISLYQPKYNIELKDDKGYPYIQIRKDNKLISIDIVYKIKRGHKYFSYG 131 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PF A E LL+ L Y+ G ++ E + Sbjct: 132 PFLKRSAAFEIKKLLESE------------------LLYEKG--------AKITFEN-QE 164 Query: 191 QVEYV----RLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK-QFV 245 QV+ + L + + + +M A +N+++E A + + I ++++ + Q V Sbjct: 165 QVDDAFNLSKDIL--QKRKWINYYEQKMNFAIENMQYEIAQKYFESITVLKQMAHQYQNV 222 Query: 246 S-NTGDDLDVIGV-AFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 N+ ++LD + + + LF R G +L R++F + L + +FV + Sbjct: 223 DLNSDENLDFMYFDSVGKNNLVITFLFYRNGYMLSHRTFFVDILF--SLENTITSFVNNY 280 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN-- 361 Y + LP + + S I ++ + L+ A+ N Sbjct: 281 Y----KNNFLPQYVFVTEESS------RFFENHLDFHIPIKIARSKSHLQILENAKINNN 330 Query: 362 --AATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANG 419 L KL Q++ ++ L + L L + + D SH + + F Sbjct: 331 DFIKKDLRIKLEQENNLNNILKQMRYELNLEKNDIILLIDNSHIANQLPTTGVIYFLNGL 390 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 + R +N TG G D + Q L++ + + ++ IPDVI +DGG Q+ + + Sbjct: 391 HSKKYNRFFNYTGSKKG-DVNYLEQGLKKHFS--VKNALIPDVIFVDGGIAQINTVETIL 447 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 + L G+ K + K + G + + ++I ++++E Sbjct: 448 LAKSLK-----IPLFGLVKNSRHKTDH---ILDKFGNKLEISQN--VFNLIANMQEEVDI 497 Query: 540 HAIGGHRKKRAKVKNT 555 + R K K T Sbjct: 498 FSKSKLRNKIIKKILT 513 >UniRef50_Q1NJF8 Helix-hairpin-helix motif (Fragment) n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJF8_9DELT Length = 303 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 97/270 (35%), Positives = 142/270 (52%), Gaps = 5/270 (1%) Query: 341 INVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFD 399 + + RGD+ + +A NAA L Q+ Q TA+ ++L + R+EC D Sbjct: 36 VQLLVPRRGDKKALVGMAHDNAAQVLAEHGRQEQQWEQLATAIQQAMQLVQPPTRLECLD 95 Query: 400 ISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI 459 IS+ G+Q V S + F++ YRR+ I DDYA M +VL R + + Sbjct: 96 ISNLGGQQAVGSLISFNSGVKEPGRYRRFKIRTRDTPDDYAMMREVLWRHLSRGWQQQSL 155 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++L+DGGKGQL A+ V AEL ++ + P L +AK +R+ E +F Sbjct: 156 PDLLLLDGGKGQLGVAQAVVAELGLA--ADKPALAAIAK--EREGEGERIFLPGRKNPLK 211 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 L P+SP L + +RDE+H I HRK R++ + S L+ I GVGP R+ LLK +G L Sbjct: 212 LAPNSPVLLFMMRLRDEAHRFGITHHRKLRSQQQLASGLDRIPGVGPARKAALLKTLGSL 271 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + +R AS E+A V GI LA I L+ Sbjct: 272 EAVRGASRAELAAVSGIGPELAAVIHDHLR 301 >UniRef50_B1ZNL0 Excinuclease ABC C subunit domain protein n=2 Tax=Verrucomicrobia RepID=B1ZNL0_OPITP Length = 510 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 18/286 (6%) Query: 331 DSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLS-------QQSTVHQRLTAL 383 + L L TK ++A L+ L + + + L AL Sbjct: 212 EWLETLRAEMAEAATKQLFEKAAELRDVIFALEETLAKTRRFERIDPTRPNVDEEALRAL 271 Query: 384 ASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMN 443 L P + +ECFDISH G VAS V F P + YRR+ I DD+ AM Sbjct: 272 GEALARPPPRTIECFDISHISGTFVVASMVHFANGRPDKDNYRRFQIKSFIGNDDFRAME 331 Query: 444 QVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADR 502 +V+ RRY + ++ + PD+++IDGG+GQ+ A F D++ P+++G+AK Sbjct: 332 EVVGRRYRRLAEEGRSFPDLVVIDGGRGQIGAAIKAFVAADLT----PPVIIGLAKK--- 384 Query: 503 KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIE 562 ET+FF E +LP + P L+++Q +RDE+H A + R+K S L+ Sbjct: 385 ---HETIFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANTYNAVLRSKKIRESVLDDFA 441 Query: 563 GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G+GP RR LL + G + LR AS+EEI +V G LA ++ L Sbjct: 442 GLGPVRRAALLAHFGSIDRLRAASIEEIGEVEGFGPKLAAELHAFL 487 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 156/352 (44%), Gaps = 37/352 (10%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS----RKTEAL 59 + K ++ + +PGVY M D G ++YVGKA+ LKKR+SSYF+ A K AL Sbjct: 6 PVNLKEKVRQLPDKPGVYLMKDRLGRILYVGKARSLKKRVSSYFQQGRARTVMQPKIRAL 65 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 + I D +E EALLLE IK ++PRYN DDK + + + + PR + Sbjct: 66 IPLIHDFDTIEVKSEPEALLLEGKLIKQWRPRYNTDFTDDKRFLLVRVDLREELPRFRLT 125 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR--CLG 176 R K YFGPF + +R+TLA +++ F I + + ++ Y R G Sbjct: 126 RLKKDDGSRYFGPFAHSGLLRKTLAQMRRQFGILLGDGTPHKLADGTWQLYDDVRQEIYG 185 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 + V+ E Y ++V+ FL GK + L L + M A+ FE+AA +RD I A+ Sbjct: 186 GMLH--VTPEAYRRRVDDACAFLEGKSREWLETLRAEMAEAATKQLFEKAAELRDVIFAL 243 Query: 237 RRVTEK----QFVSNTGDDLDVIGVAFDAGMA---------CVHVLFIRQGKVLGSRSYF 283 K + + T ++D + C + I V+ S +F Sbjct: 244 EETLAKTRRFERIDPTRPNVDEEALRALGEALARPPPRTIECFDISHISGTFVVASMVHF 303 Query: 284 --------------PKVPGGTELSEVVETFVGQFYLQGSQM-RTLPGEILLD 320 K G + +E VG+ Y + ++ R+ P +++D Sbjct: 304 ANGRPDKDNYRRFQIKSFIGNDDFRAMEEVVGRRYRRLAEEGRSFPDLVVID 355 >UniRef50_B9P7P3 Predicted protein n=3 Tax=cellular organisms RepID=B9P7P3_POPTR Length = 267 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 117/271 (43%), Positives = 158/271 (58%), Gaps = 22/271 (8%) Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLP----EVKRMECFDISHTMGEQTVASC 412 +A+ NA + L+++ + R AL L L + +ECFDISHT GE T ASC Sbjct: 1 MAQKNADIQMARLLAEEGSQQARTRALVEALDLACENLDELTIECFDISHTAGEATQASC 60 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-------------DSKI 459 VVF + +EYRR+NI GIT GDDYAAM QVL RRY + + ++ Sbjct: 61 VVFHHHKMQSSEYRRFNIEGITGGDDYAAMRQVLTRRYSRVAEAQREAGGAELTGKQPQL 120 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++L+DGGKGQ++ A+ VF +L + + ++GV KG RK GLE L F E Sbjct: 121 PDLVLVDGGKGQVSMAREVFEQLGLDVSR----IVGVEKGEGRKVGLEELVFADGREKIY 176 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN-TSSLETIEGVGPKRRQMLLKYMGG 578 L DS AL ++ IRDE+H AI G R RAKV+ LE I GVGPK+R LL+ GG Sbjct: 177 LGYDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGGKLEEIPGVGPKKRARLLQRFGG 236 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++G+ A+VE++ V GIS LAE I+ +L Sbjct: 237 VRGVSEATVEDLCSVDGISAALAEDIYRALH 267 >UniRef50_A6DMD6 Excinuclease ABC subunit C n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMD6_9BACT Length = 486 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 135/269 (50%), Gaps = 19/269 (7%) Query: 350 DRARYLKLARTNAATALTSKLS------QQSTVHQRLTALASVLKLPEVKR-MECFDISH 402 ++A + TN +AL + + L L+L +ECFD S+ Sbjct: 226 EKAATYRDIITNLKSALKQRRKFVNASINPKHKEDPVADLKKRLELDITPSVIECFDNSN 285 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPD 461 G VAS V F P YR + I + DD+A+M +++ RRY + + + +PD Sbjct: 286 FQGTHAVASMVRFVDGKPDNKSYRHFKIKTVEGPDDFASMKEIVYRRYSRLLREKRPLPD 345 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +ILIDGGKGQL+ A EL + +H G+AK E LF + EG LP Sbjct: 346 LILIDGGKGQLSSALQSIDELGI----DHIPTYGLAKK------HELLFTRNDSEGKILP 395 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 S L ++QH+RDESH AI HR+ R K S L+ I G+G KR+ LL + G ++ Sbjct: 396 RTSAGLKMLQHLRDESHRFAINFHRQLRRKQVANSLLDDIPGIGKKRKMTLLNHFGSVRE 455 Query: 582 LRNASVEEIAK-VPGISQGLAEKIFWSLK 609 +R AS ++IA+ VPG+ + A I LK Sbjct: 456 IRKASPQDIAEAVPGLGEKSAHMILEYLK 484 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 172/369 (46%), Gaps = 36/369 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL---ASRKTE 57 M+++ D + ++S PGVY D VIYVGKAK L+KRL++YF+++ A K Sbjct: 1 MNERDDFSP--RKISSDPGVYVFRDRFAKVIYVGKAKSLRKRLATYFQASRLATADPKLR 58 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLA 116 +L+ I + +E+EALLLE +IK Y P YN+L+RDDK++ + ++ + +PR+ Sbjct: 59 SLINSIAFYETYEVKSESEALLLESRFIKEYSPHYNILMRDDKNFYLVKVTINEPYPRIL 118 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR-CL 175 + R K YFGPFP A+R T+ L + F +R C + + R + QI R C Sbjct: 119 LTRVRKDDGAAYFGPFPCSSAIRSTVEFLTRYFKLRTCTSRIPDLSDRKHCKEQILRNCS 178 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC + V++E+Y + V + L G+ ++ +L M+ + L+FE+AA RD I Sbjct: 179 APCDQS-VTQEQYRESVGDMIKVLEGQIADIVDELNEAMQNYVEKLQFEKAATYRDIITN 237 Query: 236 VRRVTEKQF-----VSNTGDDLDVIGVA--------------------FDAGMACVHVLF 270 ++ +++ N D + F A ++ Sbjct: 238 LKSALKQRRKFVNASINPKHKEDPVADLKKRLELDITPSVIECFDNSNFQGTHAVASMVR 297 Query: 271 IRQGK--VLGSRSYFPKVPGGTELSEVVETFVGQFYLQ-GSQMRTLPGEILLDFNLSDKT 327 GK R + K G + ++ V + Y + + R LP IL+D + Sbjct: 298 FVDGKPDNKSYRHFKIKTVEGPDDFASMKEIVYRRYSRLLREKRPLPDLILIDGGKGQLS 357 Query: 328 LLADSLSEL 336 S+ EL Sbjct: 358 SALQSIDEL 366 >UniRef50_D1N623 Excinuclease ABC, C subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N623_9BACT Length = 505 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 144/273 (52%), Gaps = 21/273 (7%) Query: 347 PRGDRARYLKLARTNAATALTSKLSQQSTVH--------QRLTALASVLKLPEVK-RMEC 397 R ++A +L+ TN + + AL L L ++ R+ Sbjct: 242 QRFEKAAHLRDVLTNLEAVFGKRNRIFERPELPGTAPGMAAVRALGEALGLEKLPSRIIG 301 Query: 398 FDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS 457 FDIS+ +G+ VAS V F P R YRR+ I + DD+A M++VL R +G+ +++ Sbjct: 302 FDISNILGKLAVASLVAFKEGRPDRDNYRRFKIRTVHQSDDFAMMHEVLVRHFGRLLEEK 361 Query: 458 -KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGE 516 +PD++++DGGKGQL+ A + E+ ++G+AK E ++ E Sbjct: 362 RPLPDLVMVDGGKGQLSSAIDALVEIG----CPPLPVIGLAKRN------EEIYLPGRSE 411 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 L +PAL ++Q +RDE+H AI HR+ R K S L+ I+G+G R++ LL+ Sbjct: 412 PVVLDRHNPALRMLQALRDEAHRFAITYHRELRNKRIEQSRLDEIQGIGDTRKKQLLRAF 471 Query: 577 GGLQGLRNASVEEIA-KVPGISQGLAEKIFWSL 608 G L+ L+ A+ +EIA KVPGI + LAEKI +L Sbjct: 472 GSLRALKKATPDEIAEKVPGIGEALAEKILAAL 504 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 6/236 (2%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL---ASRKTEALVAQIQQIDVT 69 + ++PGVY D G VIYVGKA +L++R+SSYF+ + A K +L+ I Sbjct: 30 EIPAKPGVYVYRDRFGKVIYVGKAANLRRRMSSYFQPSRVVRADAKLRSLINSISDWSYE 89 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 V TE EAL+LE IK + P YNVL+RDDK Y + + + P L + R K+ +Y Sbjct: 90 VVRTEDEALILESRLIKDFAPHYNVLMRDDKRYLLLKIDWHEKFPTLKLARLKKNDGAQY 149 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-CLQYQIGRCLGPCVEGLVSEEE 187 FGPFP G A++ TL L F +R C +S +R CL+ + C PC G V+ EE Sbjct: 150 FGPFPKGGALKMTLEFLLAHFGLRACRDSEPDEETRKRCLKRIVKDCCAPCT-GAVTPEE 208 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 Y ++VE L+G ++ + +M A+ FE+AA +RD + + V K+ Sbjct: 209 YRERVEQAVAVLNGDIAELTAAIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGKR 264 >UniRef50_C9M9X8 Excinuclease ABC, C subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9X8_9BACT Length = 496 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 102/249 (40%), Positives = 152/249 (61%), Gaps = 4/249 (1%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQ 65 + LK + ++PGVY M+D G +IYVGKAK+LK+R+SSYF + A + LVA + Sbjct: 4 IRGLLKKLPNRPGVYLMHDERGKIIYVGKAKNLKRRVSSYFNHKDFAIPRLRKLVATVCD 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I T ++ EA ++E IK YQP +NV L+ YP+ ++ + PRL + R + K Sbjct: 64 ITTIRTASDAEAYIVESRLIKAYQPFFNVELKMGTRYPWAVVTDEPFPRLVVTRR-RDIK 122 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLVS 184 G YFGPF + A+++ L +++K FP+R C+ + R + SRPCL Y IG+C PCV GL + Sbjct: 123 GRYFGPFISAGALKDVLHIIEKAFPLRSCKYDLTRTKLSRPCLDYGIGKCDAPCV-GLCT 181 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 EY ++V+ V L LSG+ ++ +L +RME + LEFE A RD I+++ R+T Q Sbjct: 182 AREYGERVDDVILLLSGQTADLIARLRARMEECASRLEFEAAGVARDAIRSLWRMTRSQV 241 Query: 245 VSNTGDDLD 253 DDLD Sbjct: 242 TGTLSDDLD 250 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 17/296 (5%) Query: 317 ILLDFNLSDKTLLADSLSELAGRKINVQTK--PRGDRARYLKLARTNAATALTSKLSQQS 374 +LL +D + E ++ + R ++ R+ L+ L + S Sbjct: 194 LLLSGQTADLIARLRARMEECASRLEFEAAGVARDAIRSLWRMTRSQVTGTLSDDLDEDS 253 Query: 375 TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGI 433 + AL ++ LP V R++ FDISH G +T VVF+ P + YRR+ I + Sbjct: 254 WT--AMKALQELVGLPTVPWRIDGFDISHHAGYETYGVSVVFEQGYPNPSLYRRFKIRTV 311 Query: 434 TPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL 492 DD+ ++ + + R+Y A+ ++ +P + +IDGG QLA A+ AEL+++ Sbjct: 312 DWIDDFRSIEETVTRKYRMALRAEAPLPQLAMIDGGPQQLAFARKALAELELNLPT---- 367 Query: 493 LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKV 552 + +A+ E ++ P+ LP + PAL ++Q +RDE+H AI HR+ Sbjct: 368 -VALAEEE------ELIYTAPDAAPIRLPRNDPALRLLQRVRDEAHRFAITSHRRASTAR 420 Query: 553 KNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + S+LE I G+G +LL G ++ + S EE++ V GI A +I +L Sbjct: 421 FSRSALEDIPGIGKHTSALLLSAFGSVRRVAGLSEEELSSVKGIGPVTARRIKEAL 476 >UniRef50_B3E0M3 Excinuclease ABC subunit C n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0M3_METI4 Length = 486 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 135/248 (54%), Gaps = 12/248 (4%) Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPL 421 A +L + S+ + L L +VL LP+V +ECFDIS+ VAS V F Sbjct: 245 ARRFVKQLPKVSSPLEDLEELQAVLALPQVPHLIECFDISNISSTHKVASMVTFREGKAD 304 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA 480 R+ YRRY I + DD+A M +V+RRRY + +D+ ++PD+I++DGGKGQL+ A Sbjct: 305 RSSYRRYRIKTVAGQDDFACMQEVIRRRYKRVLDEGGRLPDLIVVDGGKGQLSSALKALH 364 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L + N ++G+AK E ++ E + L S AL ++Q IRDE+H Sbjct: 365 SLQL----NDLCVIGLAKEN------EEIYREALPDPLVLDKRSKALRLLQRIRDEAHRV 414 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A H+ K S L+ G+ R+++L++ G ++ ++ +SVEEIA V GI + L Sbjct: 415 ANSYHQLLLKKRMRESILDDCPGISENRKKLLIRAFGSIEKIKKSSVEEIAAVKGIGKKL 474 Query: 601 AEKIFWSL 608 AE+I L Sbjct: 475 AEQILSFL 482 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 108/365 (29%), Positives = 175/365 (47%), Gaps = 34/365 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA---SRKTEALVA 61 + ++ + +PGVY D VIYVGKA DL KR+S YF + RK ALV Sbjct: 3 MSLQEKIRDLPHKPGVYLFKDRFNRVIYVGKAVDLHKRVSQYFHPSRRLRADRKLNALVE 62 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 ++ V H+E EA+LLE IK ++PRYNV RDDK + + + + PR + R Sbjct: 63 AAVDLEYYVVHSEAEAVLLEGRLIKEFRPRYNVSFRDDKRFLLVKVDLSEPFPRFQVTRL 122 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCV 179 K YFGPF + A+R TL L++K F +R C + + + CL + I C PC+ Sbjct: 123 KKQDNARYFGPFASSSALRTTLNLMKKKFGLRSCSALIPSEKDYKHCLDHIIKNCSAPCI 182 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 +S+ EY ++V+ FL GK +++ ++ +ME A+Q +FE+AA +R+ ++A+ Sbjct: 183 -AKISQAEYLERVKMACAFLEGKSKEMIDEIRLKMEEAAQAQDFEKAAELRNLLEALEET 241 Query: 240 TE------KQ--FVSNTGDDLD----VIGVAF-------------DAGMACVHVLFIRQG 274 T KQ VS+ +DL+ V+ + + ++ R+G Sbjct: 242 TRPARRFVKQLPKVSSPLEDLEELQAVLALPQVPHLIECFDISNISSTHKVASMVTFREG 301 Query: 275 KVLGS--RSYFPKVPGGTELSEVVETFVGQFYLQG-SQMRTLPGEILLDFNLSDKTLLAD 331 K S R Y K G + ++ + + Y + + LP I++D + Sbjct: 302 KADRSSYRRYRIKTVAGQDDFACMQEVIRRRYKRVLDEGGRLPDLIVVDGGKGQLSSALK 361 Query: 332 SLSEL 336 +L L Sbjct: 362 ALHSL 366 >UniRef50_A7BXI2 UvrABC system protein C n=1 Tax=Beggiatoa sp. PS RepID=A7BXI2_9GAMM Length = 277 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 126/254 (49%), Positives = 158/254 (62%), Gaps = 38/254 (14%) Query: 390 PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRR 449 +R+ECFDISHT GE TVASCVVFD GP +EYRR+NI ITPGDDYAAM Q L RR Sbjct: 23 ETPQRLECFDISHTQGEATVASCVVFDTEGPRNSEYRRFNIENITPGDDYAAMQQALNRR 82 Query: 450 Y-----------------GKAIDDSK------IPDVILIDGGKGQLAQAKNVFAELDVSW 486 Y +A+D +PD++L+DGG GQ+ AK V +L ++ Sbjct: 83 YQGNRWKGTGEREIREIGEQALDSMPQQAQNLLPDILLVDGGIGQVNVAKTVLNKLQLT- 141 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGE-----------GFSLPPDSPALHVIQHIRD 535 H ++GVAKG RK GLETL + F+LP DSPALH+IQ IRD Sbjct: 142 ---HIRIIGVAKGPGRKPGLETLILSEDETCFPASGSSSPVSFTLPKDSPALHLIQQIRD 198 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI GHRK+RAK ++TS LE I+G+G KRRQ LL Y GGLQG+ A VE++A VPG Sbjct: 199 EAHRFAIVGHRKRRAKARHTSILEEIDGIGLKRRQRLLSYFGGLQGVSRAGVEDLATVPG 258 Query: 596 ISQGLAEKIFWSLK 609 I + LA+KI+ + Sbjct: 259 IERPLAQKIYDFFQ 272 >UniRef50_C0A483 Excinuclease ABC C subunit domain protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A483_9BACT Length = 540 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 123/249 (49%), Gaps = 12/249 (4%) Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLR 422 +T + AL L LP R +ECFDISH G VAS V F P + Sbjct: 286 RKFERNHPVIATDTAAMRALGEALGLPAPPRTLECFDISHISGTFVVASMVHFADGRPDK 345 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAE 481 YRR+ I DD+ AM +V+ RRY + ++ PD+I+IDGG+GQ+A A FA Sbjct: 346 NNYRRFQIKSFIGNDDFRAMEEVVGRRYRRLREEGKPFPDLIVIDGGRGQIAAALKAFA- 404 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 D P L+G+AK ET+ F E +LP PAL ++Q +RDE+H A Sbjct: 405 ---IIDAPPPPLIGLAKK------HETIIFPDERAPLNLPLTHPALSLLQRLRDEAHRFA 455 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 + R++ S L+ +G+G RR LL + G + LR A+ +I +V G LA Sbjct: 456 NTYNADLRSRKIRESVLDDFDGLGEVRRAALLAHFGDIDRLRAATEAQIREVSGFGPKLA 515 Query: 602 EKIFWSLKH 610 ++ L H Sbjct: 516 AELHAWLHH 524 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 126/281 (44%), Gaps = 40/281 (14%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA----SRKTE 57 ++ + K ++ + +PGVY M D G +IYVGKAK LKKR+SSYF + A K Sbjct: 4 TEPVNLKEKVRHLPDKPGVYLMRDRLGRIIYVGKAKSLKKRVSSYFMPSRAARELHPKIR 63 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLA 116 AL+ I D +E EALLLE IK ++P+YN DDK + + + + P+ Sbjct: 64 ALIQLIADFDTIEVKSEPEALLLEGRLIKEWRPKYNTDFTDDKRFLLVRVDPMEPLPKFR 123 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRC-- 174 + R K + YFGPF + +R+TLA +++ F I + + R Y R Sbjct: 124 LTRIRKDTRSRYFGPFAHSGLLRKTLAQMRRQFGILLGDATPRRLDDGRWQLYDDVRQDL 183 Query: 175 ---------------------------------LGPCVEGLVSEEEYAQQVEYVRLFLSG 201 G ++E +Y +VE FL G Sbjct: 184 YSKVGGGGGGEAGAVERTAGEVGTAGGAGMAGGAGAAGGNEITEADYRARVEAACEFLDG 243 Query: 202 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 K + L QL +M A+ EFE+AA +RD + A+ +K Sbjct: 244 KSREWLAQLREQMSAAAAKHEFEKAAELRDIVFALEGTLQK 284 >UniRef50_B8FTB6 Excinuclease ABC C subunit domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FTB6_DESHD Length = 376 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 104/349 (29%), Positives = 166/349 (47%), Gaps = 12/349 (3%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEAL 59 M D+ K LK + QPGVY M D+ G +IYVGKAK+LK R+S YF K E + Sbjct: 1 MEDKNCLKEKLKDLPEQPGVYLMQDSLGNIIYVGKAKNLKNRVSQYFYKQKDRDPKVEEM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 + +I + + TE +ALL E IK +P YN +++ + Y +I + ++ PRL + + Sbjct: 61 ILRIADWEYRIVDTELDALLEECRLIKEIKPHYNRQMKNHQKYVYIKIPDESFPRLDIVQ 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + G Y+GPF + + V + L IF IR+C CL Q+G C+G C Sbjct: 121 EREAGGGIYYGPFSSRHRVETAVEGLSDIFLIRKCSAPGRSKGGNGCLYRQLGTCVGVCT 180 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G VS EEY ++++ V + D + +L SRM A + L FE AAR R+ + +R + Sbjct: 181 -GKVSSEEYRERLDGVCQAIEAGDKGAMKELSSRMARAVEGLNFEMAARYREYLLGLRYI 239 Query: 240 TEKQ-FVSNTGDDLDVIGVAF-DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 +Q F+ T + ++ + D V V I+ +V+ SR L E ++ Sbjct: 240 QGRQKFLKGTYRNKSLLALEQLDTEKKTVKVFLIKGNRVVTSRVLTW-------LDEDLK 292 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 F+ + Q + L + + +L L + I + K Sbjct: 293 QFLRE-ITQALADQPGCSRQLTQQEVDEAQILDSYLRKDRVISIPITQK 340 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 97/333 (29%), Positives = 179/333 (53%), Gaps = 17/333 (5%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQID 67 L ++ GVY M A V+Y+GK+K+LK R+SSYF N S K L +++ID Sbjct: 223 TVLNKFPTKSGVYLMKSAKDEVLYIGKSKNLKSRVSSYFNQNIDRSEKVVELTHHVRKID 282 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 T+T +E EALLLE IK Y+PR+N LL+ +SYPF+ S P+L + + E Sbjct: 283 YTLTGSELEALLLESKLIKQYKPRFNTLLKRYRSYPFLTFSEHEFPKLEIALDVEDGDKE 342 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGPFP+ ++ + +L++ F +R+C + + +R+R C+ + + RC PC +E Sbjct: 343 YFGPFPSLELLQHVVEILERYFKVRKCSDHDF-SRARFCIYFDLDRCFAPCKHPKHYKEA 401 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF-VS 246 Y ++++ +R FLSGK+ +++ +I M+ + FEEAA ++ +I ++++V +Q + Sbjct: 402 YIKELDQIRAFLSGKNPEIINVMIREMKALASENLFEEAADLKQKIHSLQKVFFRQSDIV 461 Query: 247 NTGDDLDVIGVAFDAGMA----CVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 N+ ++ +VI + + +LF+R G+++ + F + +E + + Sbjct: 462 NSVNENNVIAILPSENFSDCCKEYVLLFVRFGRLIDQKKVF------EDETESLVPVIAS 515 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSE 335 Y G T + + + +L++ + + Sbjct: 516 VYHNGHSSPTPCRK----EEIDEMQILSNWIYQ 544 >UniRef50_D1Y7G8 Excinuclease ABC, C subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7G8_9BACT Length = 575 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 113/374 (30%), Positives = 183/374 (48%), Gaps = 32/374 (8%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQ 65 +A L+T+ +PGVY M+D G VIYVGKAK LK+R+SSYF + A + LV +Q Sbjct: 10 IRAILRTLPLKPGVYLMHDETGKVIYVGKAKKLKRRVSSYFNHRDFAIPRLRKLVQTVQD 69 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I T TE+EA ++E IK QP +NV L+ YPFI ++ + PR+ + + Sbjct: 70 ISFIRTETESEAFIVESRLIKAIQPFFNVELKMGSRYPFIVVTAEKFPRVLVT-HTRPKT 128 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLVS 184 G FGP+ + A+R L +++ FP R C ++ + + +RPC+ Y IG+CLGPC G + Sbjct: 129 GRVFGPYTSAGAMRSMLNMIKNFFPARNCSMNLEKEKLARPCIMYDIGKCLGPCA-GKCT 187 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E+EY + V+ + + LSG+ ++ +L RME ++ + FEEAA+ RD I+ + + + ++ Sbjct: 188 EKEYGETVDDILMLLSGQTADLVARLRPRMERLAKEMRFEEAAKARDTIRDLWKFSRQKL 247 Query: 245 VSNTGDD------------------------LDVIGVAFDAGMACVHVLFI-RQG---KV 276 DD +D ++ AG V + QG + Sbjct: 248 SVTLADDLDEDTWFAMTRLRDLCGLPVVPWRIDGFDISHSAGRETYGVAVVFEQGYPNQS 307 Query: 277 LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSEL 336 L R V G + + ET + ++ LP IL+D +L+E+ Sbjct: 308 LYRRYAIKTVEGIDDFRSMRETVLRRYRGMIESQLPLPQLILIDGGPEQLAFARQALAEV 367 Query: 337 AGRKINVQTKPRGD 350 + R + Sbjct: 368 PVAIRTIALAKRDE 381 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 133/265 (50%), Gaps = 15/265 (5%) Query: 346 KPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTM 404 K R K +R + L L + + +T L + LP V R++ FDISH+ Sbjct: 231 KARDTIRDLWKFSRQKLSVTLADDLDEDTWF--AMTRLRDLCGLPVVPWRIDGFDISHSA 288 Query: 405 GEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVI 463 G +T VVF+ P ++ YRRY I + DD+ +M + + RRY I+ +P +I Sbjct: 289 GRETYGVAVVFEQGYPNQSLYRRYAIKTVEGIDDFRSMRETVLRRYRGMIESQLPLPQLI 348 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 LIDGG QLA A+ AE+ V+ + +AK E +F EP+ L + Sbjct: 349 LIDGGPEQLAFARQALAEVPVAIRT-----IALAKRD------ELIFTEPDKPPLRLDWN 397 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 PAL ++Q +RDESH AI HR+KR + S+LE + G+G + +LL G +Q + Sbjct: 398 DPALRLLQRVRDESHRFAITTHRRKRVSRLSRSALEDVPGIGKHKAALLLSTFGSVQRIA 457 Query: 584 NASVEEIAKVPGISQGLAEKIFWSL 608 S EE+ K PGI A KI L Sbjct: 458 ALSAEELQKAPGIGPVQAAKILGFL 482 >UniRef50_A4CG28 Excinuclease ABC, C subunit (Fragment) n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CG28_9GAMM Length = 256 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 138/260 (53%), Gaps = 17/260 (6%) Query: 354 YLKLARTNA----ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQT 408 + ++ N K +++ L L + L L ++ +ECFDIS+ G+ T Sbjct: 1 LVDMSLKNLLFFKKNLYNEKKERKTKKLSVLIDLKNKLNLKKIPFHIECFDISNIQGKNT 60 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDG 467 VAS V+F P + EYR+Y I + DD+ +M +V+ RRY + I + + +PD+I+IDG Sbjct: 61 VASMVLFKDGYPNKKEYRKYKIRSVDKPDDFESMREVVSRRYTRIIREGNPLPDLIIIDG 120 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL+ A ++ EL V N ++G+AK LE ++F + L S L Sbjct: 121 GKGQLSSACDILKELKV---YNKINIIGIAKK------LEEIYFPNDSIPVLLGKKSEQL 171 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +IQ+IR+E+H AI H++ R+ S LE I G+G K R L++ G ++ ++ A Sbjct: 172 KLIQNIRNEAHRFAINYHKQLRSNTFIQSELEEIYGIGDKTRGKLIRAFGSIENIKKADR 231 Query: 588 EEIAKVPGISQGLAEKIFWS 607 +++ K+ G + EKI Sbjct: 232 KDLIKLVGKEKT--EKIIRY 249 >UniRef50_Q601Y1 Excinuclease ABC subunit C n=4 Tax=Mycoplasma hyopneumoniae RepID=Q601Y1_MYCH2 Length = 516 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 115/540 (21%), Positives = 217/540 (40%), Gaps = 66/540 (12%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHT 73 + +Q GVYR YD T++YVGKAK+LK R++ Y + S KTE L+ + ++I + Sbjct: 13 LPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 72 Query: 74 ETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH----RGAKHAKGEYF 129 ETEAL+LE I +QP YN+ L+DD++YP+I L + + + R K ++ Sbjct: 73 ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFY 132 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF N + +L+ I ++ + V E Sbjct: 133 GPFLNKSSALVLKKILENIVLYKKGQQIVQSE-----------------------PEILN 169 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV-TEKQFVS-N 247 Q+ + L ++ ++++ ++E A +N +FE A + A+++ E+Q + N Sbjct: 170 QKFFLCKKIL--QEQKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIELN 227 Query: 248 TGDDLDVIGVAF-DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 ++D + + + F R G L ++++ + EV+ F+ +Y Sbjct: 228 NLKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT--EVLINFLNNYY-- 283 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 ++ P E+++ +E KIN++ L N + Sbjct: 284 --KINIYPDELVVKNFWPKN-------AEFLDPKINIKIGKSLKYKHILNTLAKNHQDFI 334 Query: 367 TSKLSQQ---STVHQRLTALASV-LKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 + Q+ +Q++ L LK+ V+++ D S+ + + R Sbjct: 335 SHNFDQEIQKKIKNQKILGLVKASLKIENVEKIMAIDCSNLESNYPTTGIIFYINGIYER 394 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI--PDVILIDGGKGQLAQAKNVFA 480 R +N G GD +R+ + K I + K PD+IL+DGG Q+ + Sbjct: 395 NYNRFFNYRGTKKGDT-----NYMRQGFEKYIKNPKFLKPDLILVDGGIQQINLIIEILR 449 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + + + G+ K K E + + G + L+ I++ Sbjct: 450 K-----NHFEIPIFGMVKNKRHKT--EKII---DLNGKKINVSQDVLNFFALIQENVDLF 499 >UniRef50_A6M201 Excinuclease ABC, C subunit domain protein n=5 Tax=Clostridium RepID=A6M201_CLOB8 Length = 366 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 160/345 (46%), Gaps = 12/345 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQI 63 D K +K + S PGVY M D+ VIYVGK+K+LK R+ SYF S S K LV + Sbjct: 3 MDLKEKVKKLPSSPGVYLMKDSLNNVIYVGKSKNLKSRVGSYFINSKSHSPKILKLVQNL 62 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM-HRGA 121 + + +T TE EA LLE IK +P YN L+++ KSY +I + + +P + + H Sbjct: 63 KDFEYKITDTEFEAFLLECELIKKIKPAYNRLMKNPKSYSYIKIVLNEKYPNIEISHESN 122 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + YFGP+ + L +++ I QC S+ + ++ C Y +G C+G C++ Sbjct: 123 ETDGNIYFGPYSRKNIAEKGLYGIKEYCKI-QC--SINQRKTSSCFNYSLGLCIGMCLD- 178 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 EEY + + L+G D +L ++ M +AS+ +FE AA+ RD I +V + E Sbjct: 179 TTPREEYLNILNKIINLLNGNDKIILQEMEHIMNSASEKFDFETAAKYRDYISSVNYLLE 238 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 K + I + V IR K+L S Y K +++ + Sbjct: 239 KIKIIKFTKKNRNIALLEYLDNDRVKFFLIRGNKILFSEKYILKNFDLEAFKGILKDNIL 298 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 ++ G +P EI + + ++ L + ++ Sbjct: 299 FYFNNGD----VPIEIG-KEEIDESQIIYTYLKNKSNSCKHIIIP 338 >UniRef50_B2KBS4 Excinuclease ABC C subunit domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBS4_ELUMP Length = 437 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 110/394 (27%), Positives = 186/394 (47%), Gaps = 39/394 (9%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK---TEALVAQIQQIDVTV 70 + PGVY M G V+Y+GKAK+L R+ YF + + +L+ + +ID V Sbjct: 8 LPKSPGVYIMRSGLGEVLYIGKAKNLAARVRQYFLESNLHSRGWLLPSLLPLVAKIDYIV 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 +E +AL+LE IK Y+P +N +DDKSYP+I +S + PR + R K GEY+G Sbjct: 68 AASERDALVLESRLIKKYKPFFNTDGKDDKSYPYIKISDEDFPRGLLTRN-KKGPGEYYG 126 Query: 131 PFPNGYAVRETLALLQK--IFPIRQCE------NSVYRNRSRPCLQYQIGRCLGPCVEGL 182 P PN +A++ L L P+R C+ + + R C+ + G+C PC G Sbjct: 127 PHPNAFAIKSLLRFLWTSGFAPLRPCKWNFSLSKPLDERKIRTCVYFHTGQCPAPCA-GK 185 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +S ++Y + V+ R F G ++ L M+ AS+N+++E AAR RD + + R++E+ Sbjct: 186 ISYKDYQKIVQRFRDFAEGNFGKMKHGLAKAMKMASKNMDYESAARYRDFLNTLERMSER 245 Query: 243 QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 VS D+ + + + + R G+VLG F KVP E + G+ Sbjct: 246 ILVSEYKDEKILSAIDASSKVK-------RLGEVLG----FAKVPRHIETFDT-SGLYGR 293 Query: 303 F-------YLQG----SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR 351 + Y+ G + R + +L +D L+ +E+ GR++ K G Sbjct: 294 YAVGSMVCYIDGKKHHAHYRRFKIKSVLPGTGNDDFLMM---TEIVGRRLAALKKAGGAL 350 Query: 352 ARYLKLARTNAATALTSKLSQQSTVHQRLTALAS 385 + + + +Q++ V + +LA Sbjct: 351 PDLMVIDGGKGQLGMAEAAAQRAGVKMKFISLAK 384 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 81/199 (40%), Gaps = 16/199 (8%) Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGP 420 + K+ ++ L VL +V R +E FD S G V S V + Sbjct: 248 VSEYKDEKILSAIDASSKVKRLGEVLGFAKVPRHIETFDTSGLYGRYAVGSMVCYIDGKK 307 Query: 421 LRAEYRRYNITGI---TPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAK 476 A YRR+ I + T DD+ M +++ RR +PD+++IDGGKGQL A+ Sbjct: 308 HHAHYRRFKIKSVLPGTGNDDFLMMTEIVGRRLAALKKAGGALPDLMVIDGGKGQLGMAE 367 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 V + +AK E +F E LP PAL+++ +RDE Sbjct: 368 AAAQRAGVKMK-----FISLAKRE------EEIFVTGRSESIKLPIGDPALNLLMEMRDE 416 Query: 537 SHDHAIGGHRKKRAKVKNT 555 H I HR R K Sbjct: 417 VHRFGITYHRHLRDKNLLE 435 >UniRef50_Q7UPD6 Excinuclease ABC subunit C n=5 Tax=Planctomycetaceae RepID=Q7UPD6_RHOBA Length = 474 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 90/262 (34%), Positives = 146/262 (55%), Gaps = 9/262 (3%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDV 68 +KT PGVY M D+ G VIYVGKAK+L+ R SSYF ++ +T + I ID Sbjct: 48 KVKTFPQSPGVYLMKDSAGVVIYVGKAKNLRSRASSYFLKAASEDARTADWIGDIADIDF 107 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGE 127 T +E +ALL+E IK QPR N L+DDKS+P++ ++ + PR+ + R + Sbjct: 108 VETESEVDALLMESRLIKDIQPRNNKELKDDKSFPYLMITTREEFPRVEVTREPPSKGVK 167 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-----PCLQYQIGRCLGPCVEGL 182 +GPF + A+R + ++Q+IF R C + + R PCL I +C PC Sbjct: 168 LYGPFTSAGALRGAIQVMQRIFKFRTCSLDISESDERWQWFRPCLLASINQCTAPC-NFR 226 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +S+E+Y + ++ ++ FL G ++L ++ M+ AS+ L+FE AA +RD+I + R+ E+ Sbjct: 227 ISKEDYRRDIKRLQTFLDGGKTKLLREMRGEMKAASKALDFERAAVLRDEINMIERLEER 286 Query: 243 QFVSNTGDDLDVIGVAFDAGMA 264 + +T +V + G+A Sbjct: 287 GEL-DTHAQPEVFYIDPQKGLA 307 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 12/181 (6%) Query: 377 HQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP 435 + L L VL L E R +E DI+H G +TVAS V F P + YRR+ I + Sbjct: 303 QKGLAGLKKVLGLSETPRVIEGVDIAHLGGNETVASLVQFIDGLPFKPGYRRFRIQEVKG 362 Query: 436 GDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLL 494 DD+ ++ +V+ RR+ D + PDV+LIDGGKGQL A F + D+ P ++ Sbjct: 363 IDDFRSIYEVVSRRFRGLSDRQESFPDVLLIDGGKGQLNAAMAAFRDQDI----QPPTVI 418 Query: 495 GVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN 554 +AK E +F E L ++ AL ++Q++RDESH A H R+K Sbjct: 419 SLAKRD------EEIFRPGISEPLKLSKNAFALRLLQYVRDESHRFAQHYHHILRSKSSL 472 Query: 555 T 555 Sbjct: 473 E 473 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 14/284 (4%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 Q + + + PGVY D V+YVG ++DL+ R+ SYF ++ + +V Sbjct: 218 QRRKRHLAEGLPHAPGVYLFRDEQAQVLYVGTSRDLRTRVRSYFTASETRSRMGEMVGIA 277 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 +D T EA + E I ++P+YN R+ FI L+ + PRL++ R Sbjct: 278 TVVDAIECATALEAEVRELRLIAEHKPKYNRRSRNPSKVHFIKLTREPWPRLSLVRRVLD 337 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY----RNRSRPCLQYQIGRCLGPCV 179 +Y GPF + + LA L + FP+RQC + + PC+ ++GRCL PC Sbjct: 338 DDADYLGPFSSKKTAEKCLAALHETFPVRQCTDRLPGDPAAAGRAPCVLAEMGRCLAPC- 396 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA-VRR 238 +G V YA V +R L + D+V+ + ++M + + FEEA RD++ A VR Sbjct: 397 DGSVDHATYAAVVHQLRDTLLRRPDEVVETINAKMGALAADERFEEAGVHRDRLAAFVRA 456 Query: 239 VTEKQFVSNTGDDLDVIGVAFD------AGMACVHVLFIRQGKV 276 Q +S +V+ + G VHV +R G++ Sbjct: 457 AARTQRLSALTRCPEVVAARREDDPTGPGGRWAVHV--VRHGRL 498 >UniRef50_Q7NKN5 Excinuclease ABC subunit C n=1 Tax=Gloeobacter violaceus RepID=Q7NKN5_GLOVI Length = 370 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 161/329 (48%), Gaps = 12/329 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQIDVT 69 L+ + PGVYR D G ++Y+GK+ L+ R+ SY R + SR+TE L + Q ++V Sbjct: 12 LEDLPDAPGVYRFVDCDGRLLYIGKSVHLRTRVRSYLRRDGGHSRQTERLKFEAQAVEVL 71 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 T +E ALLLE I+ Y P +N + + YPF+ LS + +PRL + R EY Sbjct: 72 CTGSELAALLLEGRLIREYLPPFNQAQKRYRQYPFLRLSVQEDYPRLHLTRVLAGDGAEY 131 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 +GP+ V LL +R C + + CL Q+G+CLGPC G + +Y Sbjct: 132 YGPYSQARFVSWMADLLSASLGLRTCRD--FSAIYHGCLLDQLGKCLGPCRTGAL-VAQY 188 Query: 189 AQQVEYVRLFLSGKD--DQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 ++VE +R L G+D ++ +M A+Q +FE+AAR RD+ QA+ Q Sbjct: 189 RERVERLRALLRGEDTGSGIIVDFERQMLNAAQREDFEQAARWRDRRQALANFVTHQGHL 248 Query: 247 NTGDDLDVIGVAFDAGMA--CVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 LD + V A + V + +IRQGK+ +S+ +P +E+ T G + Sbjct: 249 RERVSLDAVAVYPGAPRSPTSVQLFWIRQGKLTLQQSFAGDLPQERLRAELAHTLAGHY- 307 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSL 333 + P L +L + +++ L Sbjct: 308 --SEGLPPAPLFALPQQDLDEVQMVSGWL 334 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 86/360 (23%), Positives = 156/360 (43%), Gaps = 36/360 (10%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 + + + +PGVY DA G +YVGK+K+L++R+ +YF + + ++ + + + Sbjct: 220 RHLAEDLPEEPGVYVFTDARGESLYVGKSKNLRRRVRTYFTAAESRQRIREMAGLVAGVT 279 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 V +E EA + E I +P YN R+ + ++ L+ D PRL++ R Sbjct: 280 PIVCSSELEASVRELRIIAERKPPYNRRSRNPERASWVRLTADAFPRLSVVRAVSGDGAA 339 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-----------------------SR 164 + GP+ + L +FP+RQC ++ + + Sbjct: 340 HIGPYASPREAERAREALLHVFPLRQCAHTFRPPKAVAGGSGGGTRVAPQVVTSGARWTG 399 Query: 165 PCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFE 224 PC+ Q+GRC PC +G SE EYA E R+ ++G V+ +R+ + +L +E Sbjct: 400 PCVVAQLGRCGAPC-DGSESEAEYAVHAEAARVAMTGDPAAVVDAYTARIGELAADLRYE 458 Query: 225 EAARIRDQIQA-VRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYF 283 EAA +RD++ A +R Q +S ++ A V +R G++ S Sbjct: 459 EAAHLRDRLTAFLRGARRAQRLSAIAAVAHLVASRRTAAGWETCV--VRHGRLAASAVLR 516 Query: 284 PKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINV 343 P GT+ + + + V + P L + L+ D L++ A R + + Sbjct: 517 P----GTDPAAFLASLVAT--AEYVPAGYGPSPGALPG---ETELVLDWLADPATRLVEI 567 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 102/352 (28%), Positives = 160/352 (45%), Gaps = 13/352 (3%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQID 67 L V +PGVY M + GT +Y+GKAK L RL S+F + +S + ++ +++ +D Sbjct: 182 EVLPDVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVD 241 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKG 126 T T TE EA+LLE IK +PRYN R + PFI L + +P ++ R + Sbjct: 242 WTTTATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGA 301 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 EY+GP N + ++ + F +R+C++ R CL + RC PC E Sbjct: 302 EYYGPVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETK--DAE 358 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 YA VE VR FL+G+D VL + RM+ AS NL FE+AA +RD ++ + R+ EKQ V+ Sbjct: 359 AYATVVERVRAFLTGQDQSVLGTMRDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVA 418 Query: 247 NTGDDLDVIGVAFDAGMAC--VHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + A V V+ +R G+ + + S + + Sbjct: 419 AAPVRQHNAALVHQAPDRAGRVDVMLVRFGR------FEESIACAAPPSPEERDSLLERC 472 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 + P E + ++ LL+ + V+ PR A Sbjct: 473 RSVFDVEADPPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLAD 524 >UniRef50_B9XGZ6 Excinuclease ABC C subunit domain protein n=2 Tax=Verrucomicrobiales RepID=B9XGZ6_9BACT Length = 559 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 47/270 (17%) Query: 377 HQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP 435 + L L VL L R+E FDIS+ G V+S V F P R+ YR++ + + Sbjct: 264 QRDLAELGQVLDLAGPPMRIEGFDISNISGTFAVSSLVSFKNGRPDRSNYRKFKMKSVVG 323 Query: 436 GDDYAAMNQVLRRRYGKAIDDSK------------------------------------I 459 +D+A M + +RRRY + + + K + Sbjct: 324 QNDFACMAETIRRRYSRLLREGKEARKAMEAASANAVPQPSENASEVQPALPGSPLPSNL 383 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD+ILIDGGKGQL A +L +S ++G+AK E ++ + E Sbjct: 384 PDLILIDGGKGQLNAACEELEKLGLS----QIPIIGLAKE------FEEIYRPGQSEPLR 433 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 L S AL ++Q +RDESH A + + R K + S L+ +G +R+ LLK G + Sbjct: 434 LSHASGALKLLQRVRDESHRLANTYNAELRLKKISESILDEFPNIGQRRKADLLKKFGSV 493 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 Q LR A+VE+IA+VPG +A + L+ Sbjct: 494 QRLRIATVEQIAEVPGFGGKMAADLKAFLE 523 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 6/247 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA---SRKTE 57 M+ ++ L + +PG+Y M D GTVIYVGKA+DL+KR+S YF + K + Sbjct: 1 MAVSALIRSKLNELPHKPGIYLMKDRFGTVIYVGKARDLRKRVSQYFHPSRKMGWDLKFK 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLA 116 AL I +DV V +E EALLLE IK + PRYN+ +DDK + + ++ D PR Sbjct: 61 ALTEAIYDLDVHVVRSEPEALLLEGKLIKEFHPRYNISFKDDKRFLMLKVNLNDPIPRFT 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCL 175 + R + YFGPF + A++ TL ++++ F +R C R + CL + C Sbjct: 121 LTRFKQDDGARYFGPFAHSSALKNTLTMIRRQFHLRGCRPLTPNERDYKHCLYGNLKHCT 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC+ G V+ E+Y QV+ FLSG+ +++ QL M+ A+ ++E AA +RD I Sbjct: 181 APCI-GNVTREQYLAQVQAACDFLSGQGEEMQEQLAEEMKKAAAAQDYERAAMLRDAISD 239 Query: 236 VRRVTEK 242 +R+ T+K Sbjct: 240 LRQTTKK 246 >UniRef50_D2R0D2 Excinuclease ABC C subunit domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0D2_9PLAN Length = 493 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 9/263 (3%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 A ++ PG+Y M D G VIYVGKAK+L+ R SYF R +T V +I ID Sbjct: 66 AKVREFPRTPGIYLMKDDAGRVIYVGKAKNLRSRAGSYFLRGAKEEYRTAIWVDEICDID 125 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKG 126 +E +ALL+E IK QP++N L+DDK++P++ + + + PR+ + R Sbjct: 126 YVECESEVDALLMEARLIKDIQPKHNKELKDDKTFPYLMISTREDFPRVEVTRQPADRGV 185 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-----PCLQYQIGRCLGPCVEG 181 + FGPF + ++R + +LQ+IF R C + R PCL I +C PC Sbjct: 186 KLFGPFASAGSLRGAVQVLQRIFKFRTCSLDIEDGDDRWRWFRPCLLASIQQCTAPCNL- 244 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S++EY + ++ + FL G ++L QL M+ AS+ L+FE AAR+RD+I+ + + Sbjct: 245 RISKDEYRRDIDRLITFLEGGKTRLLKQLTLEMQAASKALQFEVAARLRDEIKMLETLDR 304 Query: 242 KQFVSNTGDDLDVIGVAFDAGMA 264 + + +V + G+A Sbjct: 305 RGSIDVHAQ-PEVFYIDPTKGLA 326 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 12/181 (6%) Query: 377 HQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP 435 + L L VL L E R +E DI+H G +TVAS V F P +A YRRY I G+ Sbjct: 322 TKGLAGLKKVLGLAEQPRTIEGMDIAHLGGGETVASVVQFLDGLPFKAGYRRYRIVGVDG 381 Query: 436 GDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLL 494 DD+ +M++V+ RRY K +D+ PD++LIDGGKGQL A F + D+ P ++ Sbjct: 382 IDDFRSMHEVVSRRYRKRVDEGEPFPDILLIDGGKGQLNAAMAAFRDQDI----KPPTVI 437 Query: 495 GVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN 554 +AK E +F E E L + AL ++Q++RDE+H A H R K + Sbjct: 438 SLAKQE------EEIFLPGERESIKLSRHAFALRLLQYVRDEAHRFAQHYHHILRRKSQL 491 Query: 555 T 555 Sbjct: 492 D 492 >UniRef50_B2URH7 Excinuclease ABC C subunit domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URH7_AKKM8 Length = 498 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 138/313 (44%), Gaps = 47/313 (15%) Query: 333 LSELAGRKINVQTKPRGDRARYLKLARTNAATALT--SKLSQQSTV-------HQRLTAL 383 L EL G + K +RA YL+ R N L + +++ + + L Sbjct: 190 LDELTGEMMEAADKLDFERAAYLRDIRDNLVKVLEPARRFRKRTPDLPGTVHPEEDMKEL 249 Query: 384 ASVLKLPEVKRM-ECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAM 442 L L + ECFDIS+ VAS V F P YRRY I + +D+A+M Sbjct: 250 GVALGLESPPTIMECFDISNVSSNHIVASMVRFTNGRPDNKAYRRYRIRTVDGQNDFASM 309 Query: 443 NQVLRRRYGKAIDDS---------------------------KIPDVILIDGGKGQLAQA 475 ++V+RRRY + + +S K+PD++++DGGKGQL+ A Sbjct: 310 SEVIRRRYSRILAESDAVASRQADMTLYQWLKKLSAEGKAPIKVPDLVVVDGGKGQLSSA 369 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + + ++G+AK E +FF + + LP + AL ++Q IRD Sbjct: 370 LADLEAIGL----GDMPIVGLAKQR------EEIFFPHQSQPLCLPHSTGALKLMQRIRD 419 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H A G + K S+L+ G+ ++++LL+ + ++ A IA + G Sbjct: 420 EAHRFANGYNELLYRKRMRESALDDAPGMSASKKRLLLEKFKSVTAIKKADPASIAAIRG 479 Query: 596 ISQGLAEKIFWSL 608 IS+ A + L Sbjct: 480 ISETWARTLLNYL 492 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 7/225 (3%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRSN---LASRKTEALVAQIQQIDVTVTHTETEALL 79 M DA G IYVGKAKDL +RL +YF L++ KT AL+ I D T + EA L Sbjct: 1 MKDARGNTIYVGKAKDLHRRLGNYFSPTGATLSNHKTRALINAIASFDYFETRNDQEAFL 60 Query: 80 LEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEYFGPFPNGYAV 138 LE IK Y+P YN+ ++DDK YP + + G+ PR + R K YFGPF + A+ Sbjct: 61 LESKLIKQYRPHYNIQMKDDKRYPLLKIPKGEKLPRFQLARVRKDDGARYFGPFVHSQAL 120 Query: 139 RETLALLQKIFPIRQCE-NSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRL 197 T L + F +R C+ + + R C I C PC+ G +S +Y + + Sbjct: 121 YATQEWLNRHFRLRTCKTKNPGIHDFRHCHADVIRNCSAPCI-GRISINDYNRNFDQAVR 179 Query: 198 FLSG-KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L G L +L M A+ L+FE AA +RD + +V E Sbjct: 180 LLEGTGRKSTLDELTGEMMEAADKLDFERAAYLRDIRDNLVKVLE 224 >UniRef50_D1B5F2 Excinuclease ABC, C subunit n=2 Tax=Synergistaceae RepID=D1B5F2_THEAS Length = 479 Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 100/256 (39%), Positives = 146/256 (57%), Gaps = 7/256 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEAL 59 M+D+ K ++++ +PGVY M D G VIYVGKAK L++R+ SYFR N AS + L Sbjct: 1 MADEALMKH-VRSLPERPGVYIMRDRDGNVIYVGKAKALRRRVMSYFRHGNFASPRLRKL 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V + I V T TE EAL+LE I+ +P +NV L+ + YP+I ++ + PR+ + R Sbjct: 60 VETVHDISVMRTATEAEALILEARLIRQLKPFFNVELKMSERYPYIRVTQERFPRVMVTR 119 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPC 178 + +G + GP+ +RE L LL + FP+R+C + RPC+ + IG+CL PC Sbjct: 120 -VRKGEGLFIGPYVKVRELRELLRLLDRFFPLRKCSFPIEPPYDRRPCIYHAIGKCLAPC 178 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQN-LEFEEAARIRDQIQAVR 237 GL E Y + V + L G+ ++ +L RME A+ N L FEEAA IRD I+A+ Sbjct: 179 A-GLCDEGTYRRMVAEAVMLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIW 237 Query: 238 RVTEKQFVSNTGDDLD 253 RV +Q D D Sbjct: 238 RVG-RQAPMAQVGDED 252 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 151/293 (51%), Gaps = 26/293 (8%) Query: 332 SLSELAGRKINVQTKPRGDRARYLKLARTNAATALT-----SKLSQQSTVHQ-------- 378 L + G + + K R + A Y +LA AA ++ +Q+ + Q Sbjct: 196 MLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIWRVGRQAPMAQVGDEDPLP 255 Query: 379 RLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGD 437 L AL LKLP++ R+E +DISH +G TV S VVF+ P +A YRRYNI G GD Sbjct: 256 MLWALQERLKLPQLPWRIEGYDISHHLGSDTVGSRVVFEQGRPNKALYRRYNIEGTL-GD 314 Query: 438 DYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 D+ A+ QV+RRR+ + +P++ILIDGG+ QL A ++ V+ + +A Sbjct: 315 DFRALEQVMRRRFTGSGSGDLMPNLILIDGGRVQLEFALRALDDMGVN-----VPMASLA 369 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 KG E ++ + L AL ++Q +RDE+H A+ HR +R + + Sbjct: 370 KGE------EEIYLPGRVDPLRLDRSDGALRMLQMVRDEAHRFAVSSHRDRRGRRMRRTR 423 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 LE I GVG + LL G ++ + +AS++E+A + GI + LA++I LK Sbjct: 424 LEDIPGVGKAKASQLLSRFGSVRNVASASLDELASMRGIGERLAKRISDHLKE 476 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 136/245 (55%), Gaps = 5/245 (2%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQI 66 + L PGVY M DA G V+YVGKA++L++R+ SYF L +RK + L+ + +I Sbjct: 283 QRLLADTPELPGVYLMRDALGRVLYVGKARNLRQRVRSYFSQPLGYTRKMDGLLESVAEI 342 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 + VT +E EALLLE +++ Y+P YN LR+ ++YP++ + G PRL + R Sbjct: 343 ETVVTGSELEALLLESQFVQRYKPPYNTQLRNHEAYPYVKVELGRPWPRLMLARQRDDDD 402 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGLV 183 Y GPF + A R + LL ++ P+R C S R RPCLQ +GRC+GPC G V Sbjct: 403 AVYVGPFRSTAAARSVVELLHQLLPLRTCHRSFRDARSYGRPCLQLTLGRCIGPCT-GCV 461 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + +EY V+ +LSG+ V+ + + A + L+FE AAR+RD ++ + Sbjct: 462 TPDEYRALVDCALRYLSGETSVVVERAQQLLADAVERLDFERAARLRDLLRRSEELVFSH 521 Query: 244 FVSNT 248 + Sbjct: 522 RLVRQ 526 >UniRef50_UPI0001788B47 Excinuclease ABC C subunit domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788B47 Length = 368 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 8/309 (2%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQI 66 K ++ + PGVY M D+ GTVIYVGK+K LKKR+ SYF +N S K + LV ++ + Sbjct: 2 KTKIQELPLSPGVYLMRDSRGTVIYVGKSKSLKKRVQSYFYNNKSHSPKVKRLVQHVKDL 61 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK- 125 + VT TE EA +LE I+ +P YN +++ Y +I L R Sbjct: 62 EHIVTDTEFEAFMLECRLIQDIKPMYNRKMKNPLGYSYIVLRQKRDWRWLEITDTLDEGT 121 Query: 126 ---GEYFGPF-PNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 +FGP+ + +++ + +++ I + + PCL Y IG CLG C+ G Sbjct: 122 HEPSRFFGPYTASRHSLEHAVQKVKECCKIACNHAPAASSANTPCLNYSIGLCLGKCLGG 181 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 S ++ + ++ L G D ++ ++ M A++ +FE+AA+ RD ++AV + Sbjct: 182 -ESARQFDEVMDRFIALLQGDDRRLYDEMERTMLGAAERFDFEQAAKYRDGMEAVNLLLS 240 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE-LSEVVETFV 300 K+ V ++ I V + + I+ VL S E L + V+ + Sbjct: 241 KRDVIEFAEENHSIVVYEYLNEDTIKLFLIKGNVVLHSERCSVATTADIESLRQRVKALI 300 Query: 301 GQFYLQGSQ 309 ++ + + Sbjct: 301 LSYFTRDPE 309 >UniRef50_C5RNQ3 Excinuclease ABC C subunit domain protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNQ3_CLOCL Length = 364 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 148/306 (48%), Gaps = 9/306 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQI 63 + K +K + S PGVY M D+ +IY+GK+K+LK R+SSYF+++ S K LV + Sbjct: 1 MNLKEKIKGLPSVPGVYLMKDSLENIIYIGKSKNLKNRVSSYFQNSKNHSSKVIRLVQNL 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM-HRGA 121 + D +T TE EA +LE IK +P YN L++ SY +I ++ GD +++ Sbjct: 61 KDFDYIITDTEFEAFILECKLIKEIKPPYNRLMKSPMSYSYIQVALGDNCLDISLKSEAV 120 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K YFGP+ + V + ++ I NS + C+ Y + C+G C+ Sbjct: 121 KDDNCIYFGPYTSRNIVERGILGIKNHLKIACTNNS---RKGSACINYSLKLCMGMCM-N 176 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT- 240 VS+ +Y + + L+G D ++ ++ M A+++ +FE AA+ RD I ++ + Sbjct: 177 KVSQNQYIEIYNKILQLLNGSDKSIIEEMNLVMNNAAESFDFETAAKYRDYISSINYILD 236 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +K V + + I + + I+ +++ S + EL ++ + Sbjct: 237 KKNTVEFMNKNRN-IAFIEYLDDSFAKIFLIKGNRIVFSEKFNLNHCHSYELKATIKNNI 295 Query: 301 GQFYLQ 306 ++ + Sbjct: 296 LFYFKE 301 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q31GI3 UvrABC system protein C n=2 Tax=Bacteria RepID=U... 702 0.0 UniRef50_B8CYK1 Excinuclease ABC, C subunit n=1 Tax=Halothermoth... 690 0.0 UniRef50_Q0A8X6 UvrABC system protein C n=19 Tax=Gammaproteobact... 690 0.0 UniRef50_Q5F928 UvrABC system protein C n=29 Tax=Betaproteobacte... 690 0.0 UniRef50_Q820N6 UvrABC system protein C n=2 Tax=Proteobacteria R... 685 0.0 UniRef50_C7RAS4 Excinuclease ABC, C subunit n=1 Tax=Kangiella ko... 682 0.0 UniRef50_Q47EE8 UvrABC system protein C n=6 Tax=Proteobacteria R... 673 0.0 UniRef50_Q2SF17 UvrABC system protein C n=47 Tax=Proteobacteria ... 673 0.0 UniRef50_Q3IYX6 UvrABC system protein C n=23 Tax=Alphaproteobact... 672 0.0 UniRef50_B6INU7 Excinuclease ABC, C subunit, putative n=18 Tax=c... 671 0.0 UniRef50_A5EW70 UvrABC system protein C n=1 Tax=Dichelobacter no... 668 0.0 UniRef50_Q5X1P5 UvrABC system protein C n=7 Tax=Gammaproteobacte... 667 0.0 UniRef50_D1RJY2 Excinuclease ABC subunit C n=1 Tax=Legionella lo... 666 0.0 UniRef50_A9B4F8 Excinuclease ABC, C subunit n=1 Tax=Herpetosipho... 665 0.0 UniRef50_A5WBX3 UvrABC system protein C n=3 Tax=Psychrobacter Re... 663 0.0 UniRef50_A3DJ07 UvrABC system protein C n=15 Tax=Bacteria RepID=... 662 0.0 UniRef50_B4RF25 UvrC, excinuclease ABC, C subunit n=1 Tax=Phenyl... 661 0.0 UniRef50_C6MYN0 Excinuclease ABC subunit n=1 Tax=Legionella dran... 660 0.0 UniRef50_D2RIL8 Excinuclease ABC, C subunit n=3 Tax=Veillonellac... 660 0.0 UniRef50_B0K791 UvrABC system protein C n=11 Tax=Thermoanaerobac... 657 0.0 UniRef50_Q2RS75 UvrABC system protein C n=13 Tax=Alphaproteobact... 657 0.0 UniRef50_A6BHR5 Putative uncharacterized protein n=1 Tax=Dorea l... 655 0.0 UniRef50_B2I637 UvrABC system protein C n=15 Tax=Xanthomonadacea... 655 0.0 UniRef50_C9KP10 Excinuclease ABC subunit C n=1 Tax=Mitsuokella m... 654 0.0 UniRef50_Q2G9G8 UvrABC system protein C n=2 Tax=Sphingomonadales... 651 0.0 UniRef50_B7AWB5 Putative uncharacterized protein n=1 Tax=Bactero... 651 0.0 UniRef50_B9KY82 Excinuclease ABC, C subunit n=1 Tax=Thermomicrob... 651 0.0 UniRef50_D1BLY6 Excinuclease ABC, C subunit n=5 Tax=Veillonellac... 650 0.0 UniRef50_B6IZT9 UvrABC system protein C n=6 Tax=Coxiella burneti... 649 0.0 UniRef50_Q21AW5 UvrABC system protein C n=89 Tax=Alphaproteobact... 649 0.0 UniRef50_A0L8U4 Excinuclease ABC subunit C n=1 Tax=Magnetococcus... 647 0.0 UniRef50_B0VLX1 UvrABC system protein C n=17 Tax=Moraxellaceae R... 646 0.0 UniRef50_B5EPN1 Excinuclease ABC, C subunit n=2 Tax=Acidithiobac... 646 0.0 UniRef50_B8FHR2 UvrABC system protein C n=1 Tax=Desulfatibacillu... 643 0.0 UniRef50_A6SXR9 UvrABC system protein C n=19 Tax=Betaproteobacte... 643 0.0 UniRef50_Q180Q8 UvrABC system protein C n=8 Tax=Clostridiales Re... 643 0.0 UniRef50_C9LR57 Excinuclease ABC subunit C n=1 Tax=Dialister inv... 642 0.0 UniRef50_A9KSS0 UvrABC system protein C n=59 Tax=Firmicutes RepI... 641 0.0 UniRef50_Q47Z18 UvrABC system protein C n=274 Tax=Gammaproteobac... 640 0.0 UniRef50_B8I8F2 UvrABC system protein C n=2 Tax=Clostridium RepI... 640 0.0 UniRef50_Q12W02 UvrABC system protein C n=1 Tax=Methanococcoides... 639 0.0 UniRef50_Q2NGT2 UvrABC system protein C n=4 Tax=Methanobacteriac... 638 0.0 UniRef50_B0S0L4 UvrABC system protein C n=2 Tax=Finegoldia magna... 638 0.0 UniRef50_C0ZZE8 UvrABC system protein C n=14 Tax=Actinomycetales... 638 0.0 UniRef50_C6NXT8 Excinuclease ABC subunit C n=2 Tax=Gammaproteoba... 637 0.0 UniRef50_Q3ZYA3 UvrABC system protein C n=5 Tax=Dehalococcoides ... 636 0.0 UniRef50_UPI000050F72E excinuclease ABC subunit C n=1 Tax=Brevib... 636 0.0 UniRef50_A0QWV6 UvrABC system protein C n=27 Tax=Actinomycetales... 636 0.0 UniRef50_B2FK26 UvrABC system protein C n=29 Tax=Proteobacteria ... 635 e-180 UniRef50_Q0BPX7 UvrABC system protein C n=43 Tax=Alphaproteobact... 634 e-180 UniRef50_Q2JCI3 UvrABC system protein C n=12 Tax=Actinomycetales... 633 e-180 UniRef50_D1CFI6 Excinuclease ABC, C subunit n=1 Tax=Thermobaculu... 631 e-179 UniRef50_C6E9G2 UvrABC system protein C n=3 Tax=Geobacter RepID=... 629 e-178 UniRef50_C5BV40 UvrABC system protein C n=16 Tax=Actinomycetales... 628 e-178 UniRef50_A0LHP7 Excinuclease ABC, C subunit n=1 Tax=Syntrophobac... 628 e-178 UniRef50_Q3AFE5 UvrABC system protein C n=1 Tax=Carboxydothermus... 627 e-178 UniRef50_B5E2L2 UvrABC system protein C n=268 Tax=Bacilli RepID=... 627 e-178 UniRef50_Q4JVI8 UvrABC system protein C n=8 Tax=Corynebacterium ... 626 e-178 UniRef50_Q2LR71 UvrABC system protein C n=1 Tax=Syntrophus acidi... 626 e-178 UniRef50_UPI00017881F9 excinuclease ABC, C subunit n=1 Tax=Geoba... 626 e-178 UniRef50_C9R9D0 Excinuclease ABC, C subunit n=1 Tax=Ammonifex de... 625 e-177 UniRef50_C7HUD8 UvrABC system, C protein n=2 Tax=Anaerococcus Re... 625 e-177 UniRef50_Q1Q607 Similar to uvrABC system protein C (UvrC exinucl... 625 e-177 UniRef50_Q6MDC8 UvrABC system protein C n=1 Tax=Candidatus Proto... 624 e-177 UniRef50_Q1LKN9 UvrABC system protein C n=32 Tax=Proteobacteria ... 623 e-177 UniRef50_B3QRR8 Excinuclease ABC, C subunit n=3 Tax=Bacteria Rep... 623 e-177 UniRef50_Q4FPI1 UvrABC system protein C n=3 Tax=Candidatus Pelag... 623 e-177 UniRef50_A1BED8 UvrABC system protein C n=12 Tax=cellular organi... 622 e-177 UniRef50_A5UY12 Excinuclease ABC subunit C n=5 Tax=Chloroflexace... 622 e-177 UniRef50_A0Q5Q7 UvrABC system protein C n=18 Tax=Francisella Rep... 621 e-176 UniRef50_A4XIQ3 UvrABC system protein C n=2 Tax=Clostridia RepID... 621 e-176 UniRef50_Q0B0A0 UvrABC system protein C n=1 Tax=Syntrophomonas w... 621 e-176 UniRef50_C7RHW1 Excinuclease ABC, C subunit n=4 Tax=Clostridiale... 620 e-176 UniRef50_Q6AKB8 UvrABC system protein C n=3 Tax=Deltaproteobacte... 619 e-175 UniRef50_C1FMJ8 UvrABC system protein C n=14 Tax=Clostridium Rep... 616 e-175 UniRef50_C1A8T0 UvrABC system protein C n=1 Tax=Gemmatimonas aur... 616 e-175 UniRef50_UPI0001C41B0D excinuclease ABC C subunit UvrC n=1 Tax=M... 616 e-175 UniRef50_Q1AUH1 UvrABC system protein C n=1 Tax=Rubrobacter xyla... 614 e-174 UniRef50_Q24WC0 UvrABC system protein C n=16 Tax=Firmicutes RepI... 613 e-174 UniRef50_A9WT69 UvrABC system protein C n=2 Tax=Actinobacteria (... 613 e-174 UniRef50_C1B4L2 UvrABC system protein C n=10 Tax=Actinomycetales... 613 e-174 UniRef50_B7K124 Excinuclease ABC, C subunit n=5 Tax=Cyanobacteri... 613 e-174 UniRef50_C8QX27 Excinuclease ABC, C subunit n=1 Tax=Desulfurivib... 611 e-173 UniRef50_UPI00016BFB47 excinuclease ABC, C subunit n=1 Tax=Epulo... 611 e-173 UniRef50_A2RLW6 UvrABC system protein C n=11 Tax=Bacilli RepID=U... 611 e-173 UniRef50_D1BHL1 Excinuclease ABC subunit C n=16 Tax=Actinomyceta... 610 e-173 UniRef50_A8ZVJ2 Excinuclease ABC, C subunit n=1 Tax=Desulfococcu... 610 e-173 UniRef50_A1AWP2 Excinuclease ABC subunit C n=1 Tax=Candidatus Ru... 610 e-173 UniRef50_B2A711 Excinuclease ABC, C subunit n=2 Tax=Firmicutes R... 610 e-173 UniRef50_Q6MKS2 UvrABC system protein C n=1 Tax=Bdellovibrio bac... 609 e-172 UniRef50_Q1D921 UvrABC system protein C n=2 Tax=Cystobacterineae... 608 e-172 UniRef50_B2JFL2 Excinuclease ABC, C subunit n=2 Tax=Burkholderia... 608 e-172 UniRef50_Q3M542 UvrABC system protein C n=11 Tax=Cyanobacteria R... 608 e-172 UniRef50_C0QET6 UvrABC system protein C n=2 Tax=Desulfobacterace... 607 e-172 UniRef50_D1R706 Putative uncharacterized protein n=1 Tax=Parachl... 607 e-172 UniRef50_C7MCN8 Excinuclease ABC subunit C n=1 Tax=Brachybacteri... 606 e-172 UniRef50_A7HD93 UvrABC system protein C n=5 Tax=Bacteria RepID=U... 605 e-171 UniRef50_Q03F33 UvrABC system protein C n=7 Tax=Firmicutes RepID... 604 e-171 UniRef50_UPI0000E87CD9 excinuclease ABC, C subunit n=1 Tax=Methy... 602 e-170 UniRef50_Q01S04 UvrABC system protein C n=2 Tax=Acidobacteria Re... 599 e-169 UniRef50_B3EU62 Excinuclease ABC, C subunit n=2 Tax=Candidatus A... 598 e-169 UniRef50_A5FM03 UvrABC system protein C n=25 Tax=Bacteroidetes R... 595 e-168 UniRef50_B9M422 UvrABC system protein C n=8 Tax=Desulfuromonadal... 595 e-168 UniRef50_B5YF86 UvrABC system protein C n=2 Tax=Dictyoglomus Rep... 594 e-168 UniRef50_B0VH58 Excinuclease ABC, C subunit n=1 Tax=Candidatus C... 594 e-168 UniRef50_B6AR33 Excinuclease ABC, C subunit (UvrC) n=3 Tax=Lepto... 594 e-168 UniRef50_C6XFB9 Excinuclease ABC subunit C n=1 Tax=Candidatus Li... 593 e-168 UniRef50_A1WLD5 UvrABC system protein C n=17 Tax=Burkholderiales... 593 e-168 UniRef50_D0RRP8 Excinuclease ABC subunit C n=1 Tax=alpha proteob... 589 e-167 UniRef50_C7N5B1 Excinuclease ABC, C subunit n=6 Tax=Coriobacteri... 588 e-166 UniRef50_A0M672 UvrABC system protein C n=7 Tax=Bacteroidetes Re... 588 e-166 UniRef50_A6NZD4 Putative uncharacterized protein n=1 Tax=Bactero... 586 e-166 UniRef50_B0SB16 UvrABC system protein C n=6 Tax=Leptospira RepID... 585 e-165 UniRef50_D0LVJ3 Excinuclease ABC, C subunit n=1 Tax=Haliangium o... 584 e-165 UniRef50_Q2S280 UvrABC system protein C n=1 Tax=Salinibacter rub... 584 e-165 UniRef50_C1F4W9 UvrABC system protein C n=1 Tax=Acidobacterium c... 583 e-165 UniRef50_A7VUD6 Putative uncharacterized protein n=4 Tax=Clostri... 582 e-164 UniRef50_C8X3R4 Excinuclease ABC, C subunit n=1 Tax=Desulfohalob... 581 e-164 UniRef50_Q1IZB2 UvrABC system protein C n=4 Tax=Deinococcus RepI... 581 e-164 UniRef50_C0GMH4 Excinuclease ABC, C subunit n=1 Tax=Desulfonatro... 581 e-164 UniRef50_A1ZTX2 Excinuclease ABC, C subunit n=4 Tax=Bacteroidete... 581 e-164 UniRef50_Q26GF0 Excinuclease ABC, C subunit n=5 Tax=cellular org... 580 e-164 UniRef50_C9RQJ8 Excinuclease ABC, C subunit n=1 Tax=Fibrobacter ... 580 e-164 UniRef50_C4FUE0 Putative uncharacterized protein n=1 Tax=Catonel... 580 e-164 UniRef50_C7H041 Excinuclease ABC subunit C n=1 Tax=Eubacterium s... 579 e-164 UniRef50_O26541 UvrABC system protein C n=1 Tax=Methanothermobac... 579 e-163 UniRef50_C8WI08 Excinuclease ABC, C subunit n=3 Tax=Coriobacteri... 577 e-163 UniRef50_D1VGT9 Excinuclease ABC, C subunit n=1 Tax=Frankia sp. ... 575 e-162 UniRef50_Q6SI31 Excinuclease ABC, C subunit n=1 Tax=uncultured m... 575 e-162 UniRef50_B5YHU3 Excinuclease ABC, C subunit n=1 Tax=Thermodesulf... 574 e-162 UniRef50_Q1MQH2 UvrABC system protein C n=3 Tax=Desulfovibrionac... 574 e-162 UniRef50_D1PLG8 Excinuclease ABC subunit C n=3 Tax=Ruminococcace... 573 e-162 UniRef50_Q11YP9 UvrABC system protein C n=3 Tax=Bacteroidetes Re... 572 e-161 UniRef50_D2ML33 Excinuclease ABC, C subunit n=1 Tax=Candidatus P... 572 e-161 UniRef50_B2RM62 UvrABC system protein C n=4 Tax=Bacteroidetes Re... 571 e-161 UniRef50_C7LTD0 Excinuclease ABC, C subunit n=2 Tax=Desulfovibri... 571 e-161 UniRef50_B0MPX2 Putative uncharacterized protein n=1 Tax=Eubacte... 570 e-161 UniRef50_UPI0001C3237F excinuclease ABC, C subunit n=1 Tax=Conex... 568 e-160 UniRef50_Q5LIY7 UvrABC system protein C n=26 Tax=Bacteroidetes R... 567 e-160 UniRef50_Q04EZ7 UvrABC system protein C n=42 Tax=Lactobacillales... 566 e-159 UniRef50_B3WE47 UvrABC system protein C n=33 Tax=Bacilli RepID=U... 565 e-159 UniRef50_A8SNK4 Putative uncharacterized protein n=1 Tax=Parvimo... 563 e-159 UniRef50_Q7V7L7 UvrABC system protein C n=43 Tax=Cyanobacteria R... 563 e-159 UniRef50_C0QWI5 Excinuclease ABC, C subunit n=2 Tax=Brachyspira ... 563 e-159 UniRef50_C6X0K5 Excinuclease ABC subunit C n=9 Tax=Bacteroidetes... 563 e-158 UniRef50_Q0F271 Excinuclease ABC subunit C n=1 Tax=Mariprofundus... 562 e-158 UniRef50_Q5GSR4 UvrABC system protein C n=10 Tax=Wolbachia RepID... 559 e-157 UniRef50_B1CBT5 Putative uncharacterized protein n=1 Tax=Anaerof... 558 e-157 UniRef50_C3JAE7 Excinuclease ABC subunit C n=2 Tax=Bacteria RepI... 557 e-157 UniRef50_A9NEZ8 Excinuclease ABC, subunit C n=1 Tax=Acholeplasma... 551 e-155 UniRef50_C2CW30 Excinuclease ABC subunit C n=1 Tax=Gardnerella v... 548 e-154 UniRef50_C2MAD2 Excinuclease ABC subunit C n=1 Tax=Porphyromonas... 548 e-154 UniRef50_A8GP33 UvrABC system protein C n=14 Tax=Rickettsia RepI... 545 e-153 UniRef50_C5CDH0 Excinuclease ABC, C subunit n=1 Tax=Kosmotoga ol... 542 e-152 UniRef50_C7N8N1 Excinuclease ABC, C subunit n=12 Tax=Fusobacteri... 541 e-152 UniRef50_C7LYI3 Excinuclease ABC, C subunit n=1 Tax=Acidimicrobi... 538 e-151 UniRef50_Q83NI9 UvrABC system protein C n=2 Tax=Tropheryma whipp... 537 e-151 UniRef50_Q2GJJ1 UvrABC system protein C n=6 Tax=Anaplasma RepID=... 536 e-150 UniRef50_A4ECP7 Putative uncharacterized protein n=1 Tax=Collins... 534 e-150 UniRef50_D2RB48 Excinuclease ABC, C subunit n=1 Tax=Gardnerella ... 533 e-150 UniRef50_D2MQ80 Excinuclease ABC, C subunit n=7 Tax=Bacteria Rep... 531 e-149 UniRef50_Q8REL0 UvrABC system protein C n=10 Tax=Bacteria RepID=... 530 e-149 UniRef50_Q72DX8 UvrABC system protein C n=3 Tax=Desulfovibrio vu... 526 e-148 UniRef50_C1SGC9 Excinuclease ABC, C subunit n=1 Tax=Denitrovibri... 524 e-147 UniRef50_C5NYN4 Excinuclease ABC subunit C n=1 Tax=Gemella haemo... 524 e-147 UniRef50_C3XLG8 Excinuclease abc subunit c n=1 Tax=Helicobacter ... 524 e-147 UniRef50_Q14NX3 Putative uvrc protein excinuclease abc subunit c... 519 e-145 UniRef50_Q2FPC6 UvrABC system protein C n=16 Tax=Archaea RepID=U... 515 e-144 UniRef50_Q8EWS6 UvrABC system protein C n=1 Tax=Mycoplasma penet... 514 e-144 UniRef50_A9BGW2 UvrABC system protein C n=1 Tax=Petrotoga mobili... 513 e-144 UniRef50_Q2Z008 Exconuclease ABC subunit C (Fragment) n=1 Tax=un... 511 e-143 UniRef50_D2RRA5 Excinuclease ABC, C subunit n=2 Tax=Halobacteria... 507 e-142 UniRef50_A5M6P1 Excinuclease ABC subunit C n=1 Tax=Streptococcus... 504 e-141 UniRef50_Q255T2 UvrABC system protein C n=17 Tax=Chlamydiaceae R... 502 e-140 UniRef50_A4FBL9 UvrABC system protein C n=26 Tax=Actinomycetales... 502 e-140 UniRef50_C8P3R6 Excinuclease ABC, C subunit n=1 Tax=Erysipelothr... 501 e-140 UniRef50_B9LUM9 UvrABC system protein C n=9 Tax=Halobacteriaceae... 500 e-140 UniRef50_C0QPW8 Excinuclease ABC subunit C n=5 Tax=Aquificales R... 494 e-138 UniRef50_D1AXF7 Excinuclease ABC, C subunit n=1 Tax=Streptobacil... 490 e-137 UniRef50_B7J223 UvrABC system protein C n=22 Tax=Borrelia RepID=... 490 e-137 UniRef50_A8F4P7 UvrABC system protein C n=6 Tax=Thermotogaceae R... 489 e-137 UniRef50_A8ESX8 UvrABC system protein C n=26 Tax=Epsilonproteoba... 485 e-135 UniRef50_Q72IF0 UvrABC system protein C n=5 Tax=Thermaceae RepID... 481 e-134 UniRef50_B1AJ20 UvrABC system protein C n=15 Tax=Ureaplasma RepI... 479 e-133 UniRef50_A9A4M1 Excinuclease ABC, C subunit n=2 Tax=Thaumarchaeo... 478 e-133 UniRef50_UPI0001977D11 excinuclease ABC subunit C n=1 Tax=Helico... 477 e-133 UniRef50_Q7NBC4 UvrABC system protein C n=1 Tax=Mycoplasma galli... 470 e-131 UniRef50_C2KQB5 Excinuclease ABC subunit C n=2 Tax=Mobiluncus mu... 470 e-131 UniRef50_Q2SSM4 UvrABC system protein C n=5 Tax=Mollicutes RepID... 467 e-130 UniRef50_B5Y9S9 Excinuclease ABC, C subunit n=1 Tax=Coprothermob... 465 e-129 UniRef50_B9KC51 UvrABC system protein C n=1 Tax=Thermotoga neapo... 464 e-129 UniRef50_A9EYQ9 Excinuclease ABC, subunit C n=1 Tax=Sorangium ce... 464 e-129 UniRef50_Q2NJ78 UvrABC system protein C n=3 Tax=Candidatus Phyto... 461 e-128 UniRef50_Q7VK73 UvrABC system protein C n=2 Tax=Helicobacter Rep... 460 e-128 UniRef50_D2LI59 Excinuclease ABC, C subunit n=1 Tax=Rhodomicrobi... 452 e-125 UniRef50_A7HJI0 UvrABC system protein C n=3 Tax=Thermotogaceae R... 451 e-125 UniRef50_D0WMS6 Excinuclease ABC subunit C n=1 Tax=Actinomyces s... 448 e-124 UniRef50_B3DRV5 UvrABC system protein C n=18 Tax=Bifidobacterium... 442 e-122 UniRef50_B4U9X0 UvrABC system protein C n=3 Tax=Aquificaceae Rep... 441 e-122 UniRef50_P47448 UvrABC system protein C n=2 Tax=Mycoplasma RepID... 437 e-121 UniRef50_A8FMV1 UvrABC system protein C n=22 Tax=Campylobacter R... 433 e-119 UniRef50_C3XEM6 Excinuclease ABC subunit C n=1 Tax=Helicobacter ... 430 e-119 UniRef50_Q6KH99 Excinuclease ABC nuclease subunit C n=2 Tax=Bact... 415 e-114 UniRef50_O84899 UvrABC system protein C n=13 Tax=Mycoplasma RepI... 388 e-106 UniRef50_Q4A6D1 Excinuclease ABC subunit C n=2 Tax=Mycoplasma sy... 376 e-102 UniRef50_B3PN41 Excinuclease ABC nuclease subunit C n=1 Tax=Myco... 364 6e-99 UniRef50_D1J7M2 UvrABC system protein C (UvrC protein, Excinucle... 354 6e-96 UniRef50_Q98R54 EXCINUCLEASE ABC SUBUNIT C n=1 Tax=Mycoplasma pu... 354 6e-96 UniRef50_C1PCU9 Excinuclease ABC C subunit domain protein n=1 Ta... 349 2e-94 UniRef50_Q0RH00 DNA excision repair enzyme UvrABC; UvrC subunit ... 348 3e-94 UniRef50_C5ADA8 UvrABC system protein C (Protein uvrC) n=4 Tax=P... 347 6e-94 UniRef50_B8DGB7 UvrABC system protein C (Protein UvrC) (Excinucl... 346 1e-93 UniRef50_A3NXK5 UvrABC system protein C n=59 Tax=Proteobacteria ... 346 2e-93 UniRef50_Q313T1 UvrABC system protein C n=2 Tax=Desulfovibrio de... 346 2e-93 UniRef50_B8DRE6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibri... 343 1e-92 UniRef50_A0AGX5 Complete genome n=3 Tax=Listeria RepID=A0AGX5_LISW6 342 2e-92 UniRef50_D1NSJ5 Excinuclease ABC subunit C n=3 Tax=Actinobacteri... 331 6e-89 UniRef50_D2L1M6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibri... 327 6e-88 UniRef50_C4XSA3 UvrABC system protein C n=1 Tax=Desulfovibrio ma... 327 9e-88 UniRef50_A8GXA7 Excinuclease ABC subunit C n=2 Tax=Rickettsia be... 309 2e-82 UniRef50_B2S367 UvrABC system protein C n=4 Tax=Treponema RepID=... 309 3e-82 UniRef50_C5J756 Excinuclease ABC subunit C n=1 Tax=Mycoplasma co... 309 3e-82 UniRef50_B8FTB6 Excinuclease ABC C subunit domain protein n=2 Ta... 284 7e-75 UniRef50_Q601Y1 Excinuclease ABC subunit C n=4 Tax=Mycoplasma hy... 280 1e-73 UniRef50_C9M9X8 Excinuclease ABC, C subunit n=1 Tax=Jonquetella ... 273 1e-71 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 272 2e-71 UniRef50_B3E0M3 Excinuclease ABC subunit C n=1 Tax=Methylacidiph... 271 4e-71 UniRef50_A6M201 Excinuclease ABC, C subunit domain protein n=5 T... 270 1e-70 UniRef50_A6DMD6 Excinuclease ABC subunit C n=1 Tax=Lentisphaera ... 270 1e-70 UniRef50_D1N623 Excinuclease ABC, C subunit n=1 Tax=Victivallis ... 267 8e-70 UniRef50_B9P7P3 Predicted protein n=3 Tax=cellular organisms Rep... 266 1e-69 UniRef50_Q1NJF8 Helix-hairpin-helix motif (Fragment) n=1 Tax=del... 266 2e-69 UniRef50_Q7UPD6 Excinuclease ABC subunit C n=5 Tax=Planctomyceta... 266 2e-69 UniRef50_D1Y7G8 Excinuclease ABC, C subunit n=1 Tax=Pyramidobact... 266 3e-69 UniRef50_B1ZNL0 Excinuclease ABC C subunit domain protein n=2 Ta... 265 4e-69 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 264 7e-69 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 261 7e-68 UniRef50_D2R0D2 Excinuclease ABC C subunit domain protein n=1 Ta... 260 1e-67 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 260 1e-67 UniRef50_C0A483 Excinuclease ABC C subunit domain protein n=1 Ta... 259 3e-67 UniRef50_Q7NKN5 Excinuclease ABC subunit C n=1 Tax=Gloeobacter v... 258 4e-67 UniRef50_A4CG28 Excinuclease ABC, C subunit (Fragment) n=1 Tax=P... 251 9e-65 UniRef50_D1B5F2 Excinuclease ABC, C subunit n=2 Tax=Synergistace... 250 2e-64 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 249 2e-64 UniRef50_C5RNQ3 Excinuclease ABC C subunit domain protein n=1 Ta... 249 3e-64 UniRef50_A7BFX2 Excinuclease ABC subunit C (Fragment) n=1 Tax=Ps... 248 4e-64 UniRef50_A7BXI2 UvrABC system protein C n=1 Tax=Beggiatoa sp. PS... 248 4e-64 UniRef50_B2KBS4 Excinuclease ABC C subunit domain protein n=1 Ta... 248 6e-64 UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Acti... 246 2e-63 UniRef50_B9XGZ6 Excinuclease ABC C subunit domain protein n=2 Ta... 246 2e-63 Sequences not found previously or not previously below threshold: >UniRef50_Q31GI3 UvrABC system protein C n=2 Tax=Bacteria RepID=UVRC_THICR Length = 613 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 293/611 (47%), Positives = 394/611 (64%), Gaps = 13/611 (2%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 QFD AFLK +T +PGVY MYDA G +IYVGKAK+LK+R+SSYF+ KTE LV+Q+ Sbjct: 8 QFDIDAFLKHLTERPGVYLMYDASGQIIYVGKAKNLKRRVSSYFKKRHEEIKTETLVSQV 67 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAK 122 I+VTVT TE+EAL+LE+ IK ++PRYN+L RDDKSYP+IF+ +G P L+ HRGAK Sbjct: 68 ASIEVTVTDTESEALILENTLIKRHKPRYNILFRDDKSYPYIFVSTGKKFPSLSYHRGAK 127 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 G YFGPFPN AV +TL LQKIFP+RQC SV+ +RSRPCLQYQI RC GPCVEGL Sbjct: 128 RKVGRYFGPFPNASAVHQTLHALQKIFPVRQCTESVFNHRSRPCLQYQIKRCSGPCVEGL 187 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+E EY + V++ FL GK V+ L +M+ AS EFE+AA RD+I A+R + + Sbjct: 188 VTEAEYNEDVQHTIAFLEGKSFDVIESLGHKMQQASDEFEFEKAALYRDKISALRAIQSQ 247 Query: 243 QFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV-PGGTELSEVVETFV 300 ++ G D DV+ +A +A CV ++ R G + GS++YFPK+ E++ F+ Sbjct: 248 HLINQPGSKDTDVVALAEEANQVCVSIMMYRGGNLWGSQNYFPKIGGQSINPGEIISAFI 307 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q Y+ +P IL+ L DK+ L LSE K++++ +KLA T Sbjct: 308 TQHYIDL----PIPQMILVSDVLEDKSSLETWLSEQKKAKVSIRKAVSQTHKGLMKLALT 363 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 NA + L +L+Q+++ +R+ +L VL L MECFDISHT G QTVASCVVF+ Sbjct: 364 NAQSGLKQQLTQKASQAERVKSLQDVLALASPPNHMECFDISHTQGNQTVASCVVFNEGV 423 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 P + YR++NI GI PGDDYAAM+Q + RRY + + +PD+I+IDGGKGQL +A +V Sbjct: 424 PNTSAYRKFNIEGIQPGDDYAAMHQAITRRYSRVKKEGLPLPDLIVIDGGKGQLNKAIDV 483 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 F L++ ++ L+ VAKG RKAGLE L+ EG L D ALH++ +IRDE+H Sbjct: 484 FKTLEL----DNLPLVSVAKGEGRKAGLEILYTPFNEEGIDLEADDIALHLLNYIRDEAH 539 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR +R K + S LE I GVG K R LL + GGL ++NA+V E+ KVPGIS Sbjct: 540 RFAITSHRSRRQKAQTHSRLEDIPGVGAKTRHKLLTHFGGLTEVKNAAVSELQKVPGISA 599 Query: 599 GLAEKIFWSLK 609 +A+ I+ Sbjct: 600 RIAQTIYDFFH 610 >UniRef50_B8CYK1 Excinuclease ABC, C subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYK1_HALOH Length = 607 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 220/614 (35%), Positives = 359/614 (58%), Gaps = 24/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + LK + +PGVY M D G VIYVGKAK L++R+ SYFR + KT+ +V I Sbjct: 4 IEEQLKRLPDRPGVYLMKDETGEVIYVGKAKSLRRRVRSYFRKGNHTFKTKIMVKHIADF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D VT TE EA +LE N IK Y P++N+ L+DDK+YP+I ++ + PR+ R K+ Sbjct: 64 DYIVTDTEVEAFILEANLIKKYNPKFNIRLKDDKTYPYIKVTVQEDFPRIFKTRLVKNDG 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGLV 183 YFGPF + A+ +T+ +L+ +F +R C+ ++ + RPCL Y IG+C+GPC+ G + Sbjct: 124 NRYFGPFTDVNAIYKTIDVLKDLFSLRTCKKNLEAGKPEKRPCLNYHIGKCVGPCI-GAI 182 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 Y + V+ V LFLSGK D+++ ++ M A++ FE+AAR RD ++A++ ++ +Q Sbjct: 183 DRNSYRELVDRVCLFLSGKQDELINEVEKEMYQAAEKKNFEKAARFRDAVRALKNISAQQ 242 Query: 244 FVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V ++ + + D+I + + G ACV VLFIR G+++G + + ++++ +F+ Q Sbjct: 243 KVMSSKNINQDIIALVEEEGEACVQVLFIRNGRLIGQEYFLMEGVDEESNTDIMVSFLQQ 302 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y Q +P EI+++ ++S LL D L + G+K+ + +G++ R +++A NA Sbjct: 303 YYEQ---APEIPQEIVINTHVSQTELLEDWLQQKKGKKVKILIPLKGEKKRLVEMASKNA 359 Query: 363 ATALT----SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 + L + Q+ + L L L L +E FDIS+ G VAS VVF Sbjct: 360 SQNLKKELIRRKYQKQRNEKALDQLVEYLVLSSKPVHIEGFDISNIQGSDPVASMVVFKD 419 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAK 476 P +A+YRR+ I ++ +D+A M +V++RRY + + ++ +PD+ILIDGGKGQL A Sbjct: 420 GVPSKADYRRFRIKTVSGPNDFAMMQEVVKRRYSRLLEEEGDLPDLILIDGGKGQLNAAL 479 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 V E+++ + + G+AK E +F + E +P SPALH++Q +RDE Sbjct: 480 EVLKEMNLDY----LDIAGLAKRE------EEVFLPGQKEPVIIPRKSPALHLLQRVRDE 529 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H A+ HRK R++ + L+ I GVGPKRR+ LL + G L +R A++ ++ +V GI Sbjct: 530 AHRFAVSYHRKLRSRRLTHTMLDEIPGVGPKRRKALLSHFGSLGAIRKATIGQLKEVDGI 589 Query: 597 SQGLAEKIFWSLKH 610 S A I+ L+ Sbjct: 590 SNKTARVIYDYLRE 603 >UniRef50_Q0A8X6 UvrABC system protein C n=19 Tax=Gammaproteobacteria RepID=UVRC_ALHEH Length = 611 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 304/613 (49%), Positives = 429/613 (69%), Gaps = 13/613 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 + FD KAF++++T +PGVYRM D G V+YVGKA++LKKR++SYF + S + E ++ Sbjct: 4 VPSPFDPKAFVRSLTQRPGVYRMVDGRGEVLYVGKARNLKKRVASYFTRSRKSARIELML 63 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHR 119 Q+Q I VTVTHTE EAL+LE+ IK +PRYNVLLRDDKSYP+I+LS PRL+ HR Sbjct: 64 TQVQDIQVTVTHTEAEALILENTLIKELRPRYNVLLRDDKSYPWIYLSSHQDFPRLSFHR 123 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 GA+ G +FGPFP+G+AVRETL LQK+F IRQC++S + NRSRPCLQ+QI RC PCV Sbjct: 124 GARKGPGRWFGPFPSGHAVRETLNTLQKVFRIRQCQDSFFSNRSRPCLQHQIKRCTAPCV 183 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G +S E Y + V + LFL G+ +QV+ +L +RME AS+ LEFE AA+ RD+IQA++ V Sbjct: 184 -GYISREAYQEDVRHAVLFLEGRSNQVIEELGARMEAASERLEFEAAAQYRDRIQALQAV 242 Query: 240 TEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q++ DLDVI D ACV V F RQG+ LG++ ++P++P G + +EV+ F Sbjct: 243 QERQYIVGEKGDLDVIACVSDGVTACVTVFFFRQGRNLGNKVFYPRIPEGADEAEVLAAF 302 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + ++Y+ R P E+++ + ++ +L ++LS +G ++ V R +R R+L++A Sbjct: 303 LARYYIG----RKAPPELVISHTIPEQKVLGEALSRESGHRVRVTHSVRKERRRWLEMAL 358 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 TNA ALT++ S Q+ RL AL L+LP + R+ECFDISHT GE TVA+CVVF+ + Sbjct: 359 TNARHALTARTSTQAMALHRLEALQDALQLPALPERIECFDISHTRGEATVAACVVFNQD 418 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKN 477 GPL+++YRR+NI GITPGDDYAAM Q L RRY + + +PD++LIDGGKGQ+AQA+ Sbjct: 419 GPLKSDYRRFNIRGITPGDDYAAMRQALSRRYQRLKKGEGVLPDILLIDGGKGQVAQAEA 478 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP-EGEGFSLPPDSPALHVIQHIRDE 536 V EL V + L+G+AKG +R+ G ETL +G +L PD+PAL ++Q +RDE Sbjct: 479 VLEELQV----DDVYLVGIAKGPERRPGEETLILSDEDGREKTLGPDAPALQLLQQVRDE 534 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H AI GHR++R K + S+LE I G+GPKRRQ LL++ GGL+ + A VE++A+ PGI Sbjct: 535 AHRFAIAGHRQQRGKARTRSALEDIPGLGPKRRQALLRHFGGLKAVARAGVEDLARTPGI 594 Query: 597 SQGLAEKIFWSLK 609 S+ LA+K++ Sbjct: 595 SRALAQKVYDHYH 607 >UniRef50_Q5F928 UvrABC system protein C n=29 Tax=Betaproteobacteria RepID=UVRC_NEIG1 Length = 617 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 294/622 (47%), Positives = 401/622 (64%), Gaps = 26/622 (4%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 +QFD FLK + PGVYR +D GG V+YVGKA +LK+R+S YF+ N S + +V Sbjct: 8 PEQFDIPLFLKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVK 67 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 Q++ I+ T+T +E EAL+LE+N+IK P+YN+L RDDKSYP++ LSG +P++A +RG Sbjct: 68 QVRHIETTITRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGT 127 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 +YFGP+PN AVR+++ +LQK+F +R CE+SV+ +R RPCL YQI RC PCV G Sbjct: 128 LKNPNQYFGPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCV-G 186 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +SEE+Y V FL+GK D++ L +M+TA+ NL+FEEAAR RDQIQA+ + Sbjct: 187 HISEEDYCDSVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQS 246 Query: 242 KQFVSNTG----DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL--SEV 295 QF+ + +D+D++ +A G+ CVH + IR G+ +G +S+FP E + Sbjct: 247 NQFIDSKNPNNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDY 306 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 E FV Q YL S+ P I+ +F + D L ++L G+++ TK G+R +L Sbjct: 307 AEAFVAQHYLGKSK----PDIIISNFPVPD--ALKEALEGEHGKQMQFVTKTIGERKVWL 360 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKL--PEVKRMECFDISHTMGEQTVASCV 413 K+A NA A+T + QQS R+ LA +L + + R+ECFDISHT GE T+ASCV Sbjct: 361 KMAEQNAQMAITQRHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCV 420 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI------DDSKIPDVILIDG 467 V+D ++YRRYNIT PGDDYAAM +VL RRYGK + K PDV+LIDG Sbjct: 421 VYDEQNIQPSQYRRYNITTAKPGDDYAAMREVLTRRYGKIQEAEANGESVKWPDVVLIDG 480 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQ+ A +V+ EL + H L+G+AKG +RKAG+E L GE F LPP+SPAL Sbjct: 481 GKGQIGVAVSVWEELGL-----HIPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPAL 535 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 H++Q +RDESH AI GHRKKR K + TSSL I GVG KRRQ LL GGL+G+ AS Sbjct: 536 HLLQTVRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASR 595 Query: 588 EEIAKVPGISQGLAEKIFWSLK 609 E++ KV GIS+ LAE I+ L Sbjct: 596 EDLEKVEGISKALAETIYNHLH 617 >UniRef50_Q820N6 UvrABC system protein C n=2 Tax=Proteobacteria RepID=UVRC_NITEU Length = 604 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 314/614 (51%), Positives = 414/614 (67%), Gaps = 15/614 (2%) Query: 1 MSD-QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEAL 59 M D FD KAF+ T+ +QPGVYRM +A G VIYVGKA DL+KR+SSYF+ + S + + + Sbjct: 1 MPDAHFDGKAFVLTLPAQPGVYRMLNAAGDVIYVGKAIDLRKRVSSYFQKSGLSPRIQLM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V+QI I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+ PRLA +R Sbjct: 61 VSQIAGIETTVTRSEAEALLLENNLIKSLAPRYNILFRDDKSYPYLLLTRHIFPRLAFYR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 GA + +YFGPFPN V+ ++ LLQK+F +R CENSV+ +R+RPCL YQI RC GPCV Sbjct: 121 GALDDRHQYFGPFPNAGVVKSSIQLLQKVFRLRTCENSVFDHRTRPCLLYQIKRCSGPCV 180 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 GL++ E Y Q V+ +FL GK D+VL + +M TAS ++E+AA++RDQ+QA+R++ Sbjct: 181 -GLITPEAYQQDVKSAAMFLQGKQDEVLKTIEQKMFTASDQQDYEQAAQLRDQMQALRKI 239 Query: 240 TEKQFVSNTGD-DLDVIGVA--FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 EKQFV + D DVI A D+ V+++ IR G+ LG +++FP+ ++S V+ Sbjct: 240 QEKQFVDSGKALDADVIACAIEPDSHAVAVNLVMIRSGRHLGDKTFFPQNVYEADISTVL 299 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 E FV Q YL R++P I+L + TLL LS+ AG KI + T P G+R ++L Sbjct: 300 EAFVTQHYL----NRSVPPLIILGQKIR-VTLLQKLLSDQAGHKITLTTNPIGERRKWLD 354 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 +A NA AL L QQ++ RL AL L LP + R+ECFDISHTMGE T+ASCVV+D Sbjct: 355 MAAENAQLALQQMLIQQASQEDRLQALQEALNLPGLARIECFDISHTMGEATIASCVVYD 414 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKA-IDDSKIPDVILIDGGKGQLAQA 475 EYRRYNITGI PGDDYAAM VL+RRY K +++ K+PD+ILIDGGKGQ+ A Sbjct: 415 RFAMRNGEYRRYNITGIVPGDDYAAMRDVLQRRYAKLAMEEGKLPDLILIDGGKGQIRVA 474 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V EL ++ L+GVAKG RK GLE L + E LP D PALH+IQ IRD Sbjct: 475 SEVMIELGLN----DIPLVGVAKGETRKPGLEQLILPWQEEALHLPDDHPALHLIQQIRD 530 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI GHR KRAK + S+LE I G+G KRRQ LL GGL+G++NAS+EE+ + G Sbjct: 531 EAHRFAIQGHRAKRAKTRKISTLEQISGIGTKRRQSLLTRFGGLKGVKNASIEELQQTEG 590 Query: 596 ISQGLAEKIFWSLK 609 IS+ LAEKI+ L+ Sbjct: 591 ISRSLAEKIYRELR 604 >UniRef50_C7RAS4 Excinuclease ABC, C subunit n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAS4_KANKD Length = 612 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 307/610 (50%), Positives = 420/610 (68%), Gaps = 10/610 (1%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 S + K L ++ +PGVY+M G +YVGKAK+L R+ SYF S KTE LV Sbjct: 10 STKPQIKKILAHLSHKPGVYQMLGKDGETLYVGKAKNLSNRVKSYFTRQYQSPKTELLVT 69 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 I+ I TVT TETEALLLE+N IK Y+PR+NVL RDDKSYP++FLS PRLA HRGA Sbjct: 70 YIEDIHTTVTETETEALLLENNLIKKYKPRFNVLFRDDKSYPYVFLSAGDFPRLAYHRGA 129 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K KG+YFGPFP+ AVR++L+L+QK F IRQCE+S + NRSRPCLQYQI RC PCV+ Sbjct: 130 KKEKGDYFGPFPSSSAVRQSLSLIQKTFQIRQCEDSYFANRSRPCLQYQIKRCTAPCVD- 188 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S+E+YA+ VE V+LF GK +QV+ +L +M+ ASQ L+FE AAR RDQI+ +R V + Sbjct: 189 YISKEDYAKDVENVKLFYQGKSEQVIKRLQKKMDVASQELDFELAARYRDQIKQMRHVMQ 248 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 +Q +S T DLDVIGVA+ +G+ C+ ++FIRQG ++G+++YFPKVP ++L E+V TF+G Sbjct: 249 QQVISGTASDLDVIGVAYASGVCCILLVFIRQGMIVGNKTYFPKVPKHSDLQEIVSTFLG 308 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 +YL G++ +P +++++ D L ++ E G K+ ++ RG + A N Sbjct: 309 FYYLSGAE---IPKQVVIESLPEDIEALQEAFGEQRGNKVTIRQASRGQVKEWQTFANKN 365 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 A +L +KL+ +S QRL L L++ + +ECFDISHT G+QTVASCVVFD NGP Sbjct: 366 AEHSLRAKLNSKSNFTQRLLDLQKALQMEHMPKHVECFDISHTQGQQTVASCVVFDENGP 425 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVF 479 +A+YR +NI+GIT GDDYAAM Q L RRY + D+ + +PD++++DGGKGQLA+A+ VF Sbjct: 426 KKADYRIFNISGITGGDDYAAMQQALTRRYKRLKDEQQALPDLVIVDGGKGQLAKAEEVF 485 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL++ L+GV+KG+DRK G+E ++F + + L DS A+H IQHIRDE+H Sbjct: 486 NELELKSSY----LIGVSKGSDRKVGMEQIWFPGQHQPLLLDDDSKAMHFIQHIRDEAHR 541 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR +R K S LE I GVG KRRQ LL++ GG Q + ASV++IA PG+S Sbjct: 542 FAITKHRHQRKKSATKSLLEEIPGVGAKRRQALLRHFGGWQEVEKASVKDIAGAPGVSMS 601 Query: 600 LAEKIFWSLK 609 LA+KI+ L Sbjct: 602 LAQKIYDYLH 611 >UniRef50_Q47EE8 UvrABC system protein C n=6 Tax=Proteobacteria RepID=UVRC_DECAR Length = 603 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 293/609 (48%), Positives = 396/609 (65%), Gaps = 10/609 (1%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 FDAKAFL T+T PGVYRM D GG V+YVGKAK+LKKR++SYFR NL+S + +V+QI Sbjct: 2 SFDAKAFLATLTELPGVYRMLDIGGNVLYVGKAKNLKKRVASYFRENLSSPRIAHMVSQI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 I+ T T TE EALLLE+N IK PRYN+L RDDKSYP+I LS PRL RG Sbjct: 62 ASIETTATRTEAEALLLENNLIKSLAPRYNILFRDDKSYPYIVLSKGKFPRLGFFRGNPD 121 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K +YFGP+P+ +AVR+++ L+QK+F +R CE++V+ NRSRPCL YQI RC GPCV G + Sbjct: 122 RKADYFGPYPSSWAVRDSIHLMQKMFRLRTCEDTVFSNRSRPCLLYQIKRCSGPCV-GFI 180 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S ++YA ++ +FL GK +V +L ME AS L FE+AA RDQIQ++ +V EKQ Sbjct: 181 SADDYAADIQLAAMFLLGKQQEVTRRLTKSMEEASAKLAFEQAAVFRDQIQSLHQVQEKQ 240 Query: 244 FVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 FVS++ G+D+DV+ +AG CV++ +R G+ LG R +FP +E S+ F+ Q Sbjct: 241 FVSSSKGEDVDVLVAIKEAGQLCVNLAMVRGGRHLGDRPFFPTNAADSEPSDACAAFIRQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 Y + L + +L+ELAGR + VQ ++++A NA Sbjct: 301 HYAAHPAPARILSYPLPSE--DEAGETEVALAELAGRPVPVQEGRGATHKAWVEMAIQNA 358 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPL 421 A+ +K + QRL AL L+LPE R+ECFDISHTMGE TVASCVV++ N Sbjct: 359 RLAILAKNQATAQQEQRLAALQDALQLPEPIARIECFDISHTMGEATVASCVVYEGNRMK 418 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFA 480 +++YRR+NI I GDDYAAM Q + RRY + PD+ILIDGGKGQ++ A + A Sbjct: 419 KSDYRRFNIRDIQAGDDYAAMRQAVSRRYDSIAGGEGTAPDLILIDGGKGQVSSAFSALA 478 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 +L ++ H ++GVAKG +RK GLETL F E LPP PALH+IQ IRDE+H Sbjct: 479 DLGLT----HLPMIGVAKGEERKPGLETLIFPEGREPLQLPPQHPALHLIQEIRDEAHRF 534 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI GHR +R K + TS LE++ G+GP RR+ L+ GGL G+ AS++++A+VPG+S+ + Sbjct: 535 AITGHRAQRGKARKTSKLESLPGIGPARRKALVARFGGLPGVLAASIDQLAEVPGVSREM 594 Query: 601 AEKIFWSLK 609 AEKI +L Sbjct: 595 AEKIHSALH 603 >UniRef50_Q2SF17 UvrABC system protein C n=47 Tax=Proteobacteria RepID=UVRC_HAHCH Length = 612 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 294/611 (48%), Positives = 402/611 (65%), Gaps = 10/611 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FDAK+FLK +T++PGVYRM DA G V+YVGKA++LK R+SSYFR+ S KT ALV +I Sbjct: 7 FDAKSFLKQLTTRPGVYRMMDARGEVLYVGKARNLKNRVSSYFRNTGVSIKTRALVEKIA 66 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HRGA 121 I++T+TH+ETEALLLE N IK +P YN+LLRDDKSYP+I+LS D +P L R Sbjct: 67 DIEITITHSETEALLLEQNLIKTLKPPYNILLRDDKSYPYIYLSSHDEYPSLTFRRVRQK 126 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K KG +FGP+ + AVRE+LALLQKIF IRQCE+S + NRSRPCLQ+QIGRC PCV G Sbjct: 127 KTGKGRFFGPYTSAAAVRESLALLQKIFRIRQCEDSFFSNRSRPCLQHQIGRCSAPCV-G 185 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L+ + YA+ + + +FL G++ +++ + I +ME AS L+FE AA +RDQ+ +RRV E Sbjct: 186 LIDPQSYAEDMSHATMFLEGRNPEIINETIQQMEVASAQLDFERAAVLRDQVDYLRRVQE 245 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 +Q + D+D ++ + VH LFIR G+V+GS+S++ ++ +++ +F+ Sbjct: 246 QQAIEGVARDIDAFALSSSLELVVVHGLFIRAGRVVGSKSFYLSERLESDDGDLLSSFLN 305 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y + LP EI L+DK L + E+ R + ++ R +RA +L LA+TN Sbjct: 306 QYYFGEHAIYGLPQEITTTVGLTDKDALKAAFKEVFNRNVRIEHNVRSNRAEWLHLAQTN 365 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGP 420 A AL++++ Q QR + L L VKR+ECFD+SHT GE TVASCVVF G Sbjct: 366 ANQALSTRMQSQDAQLQRWQSFCDALNLEASVKRVECFDVSHTFGEATVASCVVFGPEGA 425 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVF 479 ++ YRRYNI + GDDY AM Q L RRY K D +PD+ILIDGGKGQL A VF Sbjct: 426 IKDLYRRYNIKDVPAGDDYHAMEQALTRRYSKLKDSDVGLPDIILIDGGKGQLGIAHQVF 485 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL ++ L+GVAKG RK G+ETLF + +LP DS ALH+IQ IRDE+H Sbjct: 486 DELQITG----VTLIGVAKGVTRKPGMETLFISADNSILNLPGDSTALHLIQQIRDEAHR 541 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI GHR +R K + S L+ + G+GPKRR+ LL Y G ++ + AS+EEI +VPGIS+ Sbjct: 542 FAITGHRNQRNKKRTQSVLDAVPGIGPKRRRDLLNYFGSVRNIERASLEEIKRVPGISEV 601 Query: 600 LAEKIFWSLKH 610 +A+ I+ + Sbjct: 602 IAQTIYAAFHE 612 >UniRef50_Q3IYX6 UvrABC system protein C n=23 Tax=Alphaproteobacteria RepID=UVRC_RHOS4 Length = 623 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 239/614 (38%), Positives = 353/614 (57%), Gaps = 21/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + +LKT+ PGVYRM DA V+YVGKA++L+ R+S+Y R + S + ++ + + Sbjct: 18 IQGYLKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASM 77 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 T TETEALLLE N IK +PRYNVLLRDDKS+P I ++ D P L HRG K K Sbjct: 78 MFLTTRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEK 137 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGPF + AV TL LQ++F +R C ++ + +R+RPCL +QI RC PCV G V Sbjct: 138 GSYFGPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCV-GRVPA 196 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+YA+ + FL G+ +V L +M+ AS+ +EFE AA +RD+I+A+ +V Q + Sbjct: 197 EDYAELIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGI 256 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + G + DVI V + G ACV V FIR + G+R +FP+ G E E++E F+ QFY Sbjct: 257 NPRGVAEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFY 316 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + P ILL + + L+ LSE AGRK+ + RG++A ++ A NA Sbjct: 317 DD----KEPPRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARE 372 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L ++++ +T ++ L LA +L R+E +D SH G V +V G L++ Sbjct: 373 SLARRMAESATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKS 432 Query: 424 EYRRYNITGITP--GDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQA 475 +YR++NI G GDD+ M +VL RR+ + + + PD++LIDGG GQ++ Sbjct: 433 QYRKFNIRGAAGAQGDDFGMMKEVLTRRFERLLKEDPERKTDAWPDLLLIDGGAGQVSAV 492 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + + EL V + +GVAKG DR AG E E F+L + P L+ +Q +RD Sbjct: 493 QEILQELGV----DDVPFIGVAKGIDRDAGKEEFHRPGEP-PFALRMNDPVLYFVQRLRD 547 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR KRAK + + L+ I GVG R++ LL + G + + A V ++ V G Sbjct: 548 EAHRWAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEG 607 Query: 596 ISQGLAEKIFWSLK 609 IS+ +A+ I Sbjct: 608 ISETMAQSIHDYFH 621 >UniRef50_B6INU7 Excinuclease ABC, C subunit, putative n=18 Tax=cellular organisms RepID=B6INU7_RHOCS Length = 694 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 246/614 (40%), Positives = 360/614 (58%), Gaps = 20/614 (3%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 K +L+T+ +PGVYRM A G V+YVGKA++LK+R+++Y + + + +VA+ Sbjct: 88 TIKGYLRTLPDRPGVYRMLSAEGDVLYVGKARNLKRRVTNYTQVAKLPVRLQRMVAETVT 147 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHA 124 ++ THTE EALLLE N IK PRYNVLLRDDKS+P I ++GD P+L HRGA+ Sbjct: 148 MEFVTTHTEVEALLLESNLIKRLMPRYNVLLRDDKSFPHILITGDHPFPQLTKHRGARDR 207 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G Y+GPF + AV + LQ+ F IR C ++V+ +R+RPCLQ+QI RC PCV G V Sbjct: 208 AGSYYGPFASAGAVNRVMTALQRAFQIRTCTDTVFASRTRPCLQFQIKRCTAPCV-GRVG 266 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 + YA QV + FLSG+ +V +L M+ A++ LEFE AA++RD+I+A+ + Q Sbjct: 267 DAGYAAQVAEAKSFLSGRSSEVQARLARAMQDAAEALEFETAAKLRDRIRALTAIQAHQD 326 Query: 245 VSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 ++ G +D DVI D G+ C+ V F R G+ G+R+YFP + EV+ FV QF Sbjct: 327 INVEGVEDADVIAAHQDGGVTCIQVFFFRGGRNYGNRAYFPSHDKAQDTPEVLSAFVAQF 386 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y + + P +L+ +L + LL ++LS AG ++ + RGD+ R + A TNA Sbjct: 387 Y----ENKAAPELVLVSEDLPEHALLQEALSVRAGHRVALVAPKRGDKRRVVDHALTNAR 442 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLR 422 A +L++ + + L +A V L E R+E +D SH G V +V G L+ Sbjct: 443 EAHGRRLAESGSQAKLLAGVAEVFGLAEPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFLK 502 Query: 423 AEYRRYNITG-ITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQA 475 + YR++NI GDDYA M +VL RR+ +A+ + PD++LIDGG+GQLA A Sbjct: 503 SAYRKFNIKDPAAAGDDYAMMREVLTRRFERALKEDPERTGGTWPDLLLIDGGEGQLAVA 562 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V AEL + + L G+AKG DR AG E F F L P SP L+ +Q +RD Sbjct: 563 LEVLAELGI----DDVPLAGIAKGPDRDAGRERFFLPGRP-PFGLDPKSPVLYYLQRLRD 617 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR +R K S L+ I G+GP+R++ LL + G + + A ++++A V G Sbjct: 618 EAHRFAIGTHRARREKALGASPLDEIAGIGPRRKKALLHHFGSARAVSRAGLQDLASVEG 677 Query: 596 ISQGLAEKIFWSLK 609 IS+ +A I+ Sbjct: 678 ISEAVARIIYDHFH 691 >UniRef50_A5EW70 UvrABC system protein C n=1 Tax=Dichelobacter nodosus VCS1703A RepID=UVRC_DICNV Length = 607 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 281/608 (46%), Positives = 388/608 (63%), Gaps = 12/608 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD FL V++ GVY+M D GTV+YVGKAK+L++RLS YF+ S KT AL+ + Sbjct: 8 FDPDVFLSHVSTLSGVYQMRDQNGTVLYVGKAKNLRQRLSHYFQKTGLSVKTRALMRAVY 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I T T TE EALLLE+N IK YQP++N+LLRDDKSYP+I LS PRL ++RGA+ Sbjct: 68 DIQTTSTPTEAEALLLENNLIKQYQPKFNILLRDDKSYPYICLSQHDFPRLFLYRGAR-K 126 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G++FGP+PN + LA+LQK+F +R C +S ++NRSRPCLQYQI RC PCV G +S Sbjct: 127 NGDFFGPYPNVQSAHHALAILQKVFRLRPCLDSFFKNRSRPCLQYQIKRCYAPCV-GKIS 185 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E YAQ V++ R FL+G + +L L M AS ++E AA +RDQI +R + +KQ Sbjct: 186 AEMYAQTVQHARDFLTGNSEHLLQTLTEHMLQASAAQQYERAAIVRDQISELRTIQQKQS 245 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + ++DV+ VA G ACV VLF R G + S+++FPK+P +++ F+GQFY Sbjct: 246 MVVYAANVDVLAVATAYGKACVQVLFFRDGHSVTSQAFFPKLPELLPAGAILQAFIGQFY 305 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 R +P +I+L L D +++ LS+++ + + T+PR R ++L++ + NA Sbjct: 306 ----HQRPVPSQIVLSEALPDMDAVSEFLSQMSAHTVTLTTQPRAIRKKWLRMTQENARL 361 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 L L+Q+ ++H+R ALA ++ R+EC DISH GE TVASCVVFD G +++ Sbjct: 362 NLRLHLAQKLSMHERFKALAQAFDWQKMPQRLECVDISHMQGEYTVASCVVFDRRGAVKS 421 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAEL 482 +YRRY I GIT GDDYAAM QV++RR+ + + +PDV +DGG+GQL QA VF E+ Sbjct: 422 DYRRYKINGITGGDDYAAMKQVIKRRFARLKKGEGVMPDVFFVDGGRGQLQQAIAVFEEM 481 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 + L+GVAKG RKAGLE +F E +LP DS A+ +I HIRDE+H AI Sbjct: 482 QIEG----VQLIGVAKGEGRKAGLEQFWFPHENRPRTLPADSQAMQLIIHIRDEAHRFAI 537 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HR+ R K S LE I +G KRRQ LL++ G L GL AS E+I +VPGIS LA Sbjct: 538 SAHRRGRDKKVRVSLLEEIPNIGRKRRQALLQHFGNLAGLMQASPEDITRVPGISVKLAA 597 Query: 603 KIFWSLKH 610 +I+ +L Sbjct: 598 QIYAALHQ 605 >UniRef50_Q5X1P5 UvrABC system protein C n=7 Tax=Gammaproteobacteria RepID=UVRC_LEGPA Length = 618 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 298/624 (47%), Positives = 392/624 (62%), Gaps = 22/624 (3%) Query: 1 MSD---QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 M+D + FL + S+PG+YRM D GTV+YVGKA +LKKR++SYF KT Sbjct: 1 MNDLQLSAELALFLTKLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTR 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLA 116 ALV+QI+ I+++VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ Sbjct: 61 ALVSQIKSIEISVTRSETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIE 120 Query: 117 MHR-GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCL 175 ++R K G +FGP+P AVRET+ +QKIF IR C +S ++ RSRPCLQYQI RC Sbjct: 121 LYRSKKKPPSGNFFGPYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCT 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV +S E Y VE FL GK +L L RM+ A L FEEAA +RDQI+ Sbjct: 181 APCVH-YISPENYKLSVEDAIRFLQGKCQIILDALAERMKQAVNQLNFEEAAVLRDQIKN 239 Query: 236 VRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 +R + E+Q V D DVI + G AC+ + IR+G+VL S+S+FP VP E+ Sbjct: 240 LRLIQEQQGVVQLRGDADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEEL 299 Query: 296 ---------VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 E F+G +YL ++ +P I+ + ++++ L LS+ G+ +Q Sbjct: 300 DANSLWQQTFEAFIGFYYLDTTE--RIPDLIITNQSITESRSLEYILSQRRGKSCKIQVN 357 Query: 347 PRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMG 405 PRG ++R++ A N ++ +S+ ST+ R AL +L L + ++RMECFDISHT G Sbjct: 358 PRGVKSRWMDFAVNNLRISVAEYVSKHSTIRSRYQALKQLLALDKNIERMECFDISHTQG 417 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILI 465 E TVASCVVFD GP +EYRR+NI GITPGDDYAAM Q + RR+ + ID +PDV++I Sbjct: 418 EATVASCVVFDTEGPRPSEYRRFNIEGITPGDDYAAMEQAVTRRFKRLIDAQLLPDVLII 477 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGGKGQ++ K V L V LLGV+KG RKAG E L E F LP DS Sbjct: 478 DGGKGQVSIVKRVLTSLGV----EDITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSK 533 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 ALH++QHIRDE+H AI HRKKR K + S+LE+IEGVG KRRQ LL+ GGL+ L A Sbjct: 534 ALHLLQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKA 593 Query: 586 SVEEIAKVPGISQGLAEKIFWSLK 609 +EEI KV GIS+ LA++I Sbjct: 594 PLEEICKVQGISEQLAKRIHEHFH 617 >UniRef50_D1RJY2 Excinuclease ABC subunit C n=1 Tax=Legionella longbeachae D-4968 RepID=D1RJY2_LEGLO Length = 631 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 284/621 (45%), Positives = 386/621 (62%), Gaps = 19/621 (3%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+ + FL + ++PG+YRM D G V+YVGKA +LKKR++SYF KT +LV Sbjct: 12 MNISKELALFLAKLPNEPGIYRMLDESGAVLYVGKAANLKKRVTSYFNKQKTGIKTRSLV 71 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHR 119 QI I+++VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ +R Sbjct: 72 TQIASIEISVTRSETEALLLESNLIKTLKPKYNVLLRDDKSYPYIHLSNHPQFPRIESYR 131 Query: 120 GAKHA-KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 K G++FGP+P+ V+ET+ +QK+F IR C +S + RSRPCLQYQI RC PC Sbjct: 132 SKKKPVSGDFFGPYPSSGTVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPC 191 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 V +S E+Y + V+ FL GK +L +L RM+ A L FEEAA +RDQI+ +R Sbjct: 192 V-NYISPEDYKRSVQDAMRFLQGKCQLILDELAKRMDKAVSELNFEEAALLRDQIKCLRL 250 Query: 239 VTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE---- 294 V E+Q + D D I + + G ACV + IR G++L SRSYFP +P E Sbjct: 251 VQEQQGILQLQGDADAIAIEVNPGFACVQCVTIRDGQILSSRSYFPSLPQYGLDEELSME 310 Query: 295 -----VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 + F+G +YL S+ +P I+ + + ++ L ++LS+ G+ +Q PRG Sbjct: 311 TLWQQIFSAFIGFYYLDASEK--IPALIITNHPVDNQKTLQEALSQQRGKSCKLQVNPRG 368 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQT 408 + R++ A N ++ +++ ST+ R L L L E +RMECFDISHT+GE T Sbjct: 369 VKLRWMDFALNNLRVSVAEYITKHSTMRSRFQELEKFLGLKEPIERMECFDISHTLGEAT 428 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGG 468 VASCVVF+ GP YRR+NI GITPGDDYAAM Q + RR+ + ++ +PDV++IDGG Sbjct: 429 VASCVVFEQEGPCPNLYRRFNIDGITPGDDYAAMEQAITRRFKRLVETQSLPDVLIIDGG 488 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQ+A A+ L++S +LLG+AKG RKAG E L + SLP DS ALH Sbjct: 489 KGQVAVAQKALLSLNIS----SVILLGIAKGPSRKAGWEKLILVHDSLELSLPDDSRALH 544 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 ++QHIRDE+H AI HRKKR K + S LE IEGVG KRRQ LL GG++ L A +E Sbjct: 545 LLQHIRDEAHRFAITAHRKKRQKKQMDSVLEDIEGVGRKRRQALLHRFGGIRELAKAPLE 604 Query: 589 EIAKVPGISQGLAEKIFWSLK 609 EIAKV GI++ LA++IF Sbjct: 605 EIAKVQGINEHLAKRIFQFFH 625 >UniRef50_A9B4F8 Excinuclease ABC, C subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4F8_HERA2 Length = 641 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 234/640 (36%), Positives = 346/640 (54%), Gaps = 41/640 (6%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALV 60 ++ + L+ + PGVY D T+IYVGK+K L+ R+ SYF + + KT LV Sbjct: 10 ANHALFEERLRNLPLSPGVYIYRDQANTIIYVGKSKSLRDRVRSYFGAPRGLTSKTRRLV 69 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 I + T TE EALLLE N IK ++PRYNVLL+DDKSYP+I ++ + PR+ R Sbjct: 70 QNIADFEFITTDTELEALLLEMNLIKKHRPRYNVLLKDDKSYPYIKITKEAWPRVLRVRK 129 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR---NRSRPCLQYQIGRCLGP 177 G YFGPF +V T+ LL K+F R C + +++ R+R C+ Y I RCLGP Sbjct: 130 VIEDGGIYFGPFAKASSVYATIELLNKLFAFRLCNDDMFKKHERRNRACMYYDIKRCLGP 189 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C + EEY+ + VRLFL GK + +L L +M A+++L+FE AA +RDQI+AV Sbjct: 190 CA-NNCTTEEYSTAINQVRLFLGGKPEAILRDLKVKMNQAAEDLQFERAAYVRDQIKAVE 248 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 RV E+Q V NT D DVI A D G A V V +IR GK++GS + + ++ Sbjct: 249 RVMERQKVLNTAASDQDVIAFARDEGKAVVQVFYIRGGKLIGSEPFTLQGTEEEHPEALM 308 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 +F+ QFY + +P ILL + ++ L G K+++Q RGD+ + Sbjct: 309 SSFLTQFYDAAAD---IPPNILLPDYPEETQIIEQWLESKGGHKVSLQVPRRGDKKDLVD 365 Query: 357 LARTNAATALT----SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVAS 411 LA NA+ L L+ + L+ L +L L E+ R+EC+DIS+T G +V S Sbjct: 366 LAARNASQTLDQLRLQWLNAEQRATAGLSQLRELLNLAELPQRIECYDISNTQGTNSVGS 425 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID---------------- 455 VVF+ P + YRR+ I + +D A++++VL+RR+ +A D Sbjct: 426 MVVFEQGEPAKKHYRRFKIKTVEGANDVASLSEVLQRRFARADDTGQTDEPESTEQTSAE 485 Query: 456 -------DSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET 508 + +PD+ILIDGG GQ+ A A H ++G+ KG + Sbjct: 486 PTNNDETWAVLPDLILIDGGIGQVNAAAKTLAAAGF----EHIPVVGLVKGDTKGHLPYG 541 Query: 509 LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKR 568 L + + + P LH++Q I +E+H AI HRK R K S++E I G+GPKR Sbjct: 542 LVKPGQRVPIAFAQNDPGLHLVQRIDEEAHRFAISYHRKLRTKGMLRSTMEDIPGIGPKR 601 Query: 569 RQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 ++ L+ G L+G+RNAS+EE+A VPG+++ AE+I L Sbjct: 602 KKALINAFGSLEGIRNASIEELAAVPGMTRKAAEEIKGLL 641 >UniRef50_A5WBX3 UvrABC system protein C n=3 Tax=Psychrobacter RepID=UVRC_PSYWF Length = 614 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 296/614 (48%), Positives = 391/614 (63%), Gaps = 16/614 (2%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 Q K +K + + PGVY+M G ++YVGKAK LK R++SYF + KT ALV+ Sbjct: 12 DKQARLKHLIKRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVS 71 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRG 120 +I I+ +T +ETEALLLE N IK ++P YNVLLRDDKSY ++F+S D +PRLA RG Sbjct: 72 RIHDIETIITRSETEALLLEQNLIKEHRPPYNVLLRDDKSYLYVFISADQPYPRLAYGRG 131 Query: 121 A-KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 KH KG++FGPFP+ +A +ETL L+QK+F +RQC N+ +R R RPCL+YQI RC PCV Sbjct: 132 KAKHQKGKFFGPFPSAHAAKETLVLMQKMFQMRQCTNTFFRQRKRPCLEYQIKRCRAPCV 191 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 GLVS EEYA V+ FL G + T LI +ME +++ L+FE+AA RDQ+ +R V Sbjct: 192 -GLVSAEEYAADVQNTIRFLKGDSSDIHTTLIEKMEHSAEALDFEKAAFYRDQLSMLREV 250 Query: 240 TEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +Q V + D+I +A AGM CV+VL +R G+VLG ++YFP V +++ + F Sbjct: 251 QSRQAVYTVQGEADIISIASQAGMTCVNVLTVRGGRVLGGKNYFPDVDSNEPINDNLSAF 310 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + FY Q + LP EI++ L D+ L ++LS K ++T R RA +L LA+ Sbjct: 311 ITSFYFQVTD--DLPAEIIISHELPDQMALQEALSTYFEAKTVIKTNVREHRAEWLDLAK 368 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLK---LPEVKRMECFDISHTMGEQTVASCVVFD 416 NA AL +KL +H R AL VL+ + +ECFDISHTMGE T+ASCVVFD Sbjct: 369 LNAHNALKTKLGDYLELHARFAALKEVLEPVSQSSIDTIECFDISHTMGEATIASCVVFD 428 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAK 476 G + +YR+Y I G+ GDDYAAM Q + RRY K +PDV+LIDGGKGQL+ AK Sbjct: 429 QGGARKRDYRQYAIHGVQDGDDYAAMAQAITRRYKKH----PLPDVLLIDGGKGQLSMAK 484 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 NV EL + N LL+GVAKG RKAGLE L F E E LP DS ALH+I +IRDE Sbjct: 485 NVLTELGL---LNDTLLIGVAKGEGRKAGLEVLHFI-EHEPLDLPMDSKALHLIMNIRDE 540 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H AI HRKKR K +++S LE I G+G KRR+ LL + GGLQ L AS +E+ V GI Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRDLLNHFGGLQQLLGASQQELEGVNGI 600 Query: 597 SQGLAEKIFWSLKH 610 + +A I+ L Sbjct: 601 GKVMANTIYKVLHE 614 >UniRef50_A3DJ07 UvrABC system protein C n=15 Tax=Bacteria RepID=UVRC_CLOTH Length = 625 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 223/635 (35%), Positives = 356/635 (56%), Gaps = 42/635 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQI 63 FD + LK + +PGVY M D G +IYVGKA LK R+ YF+S + + K A+VA I Sbjct: 2 FDIQEELKKLPDKPGVYIMKDENGEIIYVGKAVVLKNRVRQYFQSLSNQTPKVRAMVAHI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ++ + VT TE EAL+LE N IK ++P++N+LL+DDK+YP+I ++ + PR+ M R + Sbjct: 62 KEFEYIVTDTELEALILECNLIKKHRPKFNILLKDDKNYPYIKVTMNEDFPRILMTRRVE 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVE 180 +YFGP+ + YAVRET+ L++K+FP++ C + R + RPCL Y I +CLGPC + Sbjct: 122 KDGAKYFGPYTSAYAVRETIDLVKKLFPVKTCSKVLPRDIGKGRPCLNYHIYQCLGPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G VS+EEY ++ V FL G+ + ++ +L M+ A+ NLEFE AARIRD+I +++ + Sbjct: 181 GNVSKEEYRFMMQDVCNFLGGRQEDIIKKLEKDMKEAADNLEFERAARIRDKINSLKHIA 240 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + +T +D DVI A +C+ V FIR GK++G + + SE++ F Sbjct: 241 EKQKIISTAMEDQDVIAFAKSETDSCIQVFFIRGGKLIGREHFILEGTSDVSDSELMTAF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 V QFY + +PG+I+L ++ + ++ LS G K ++ RG++ + +++ Sbjct: 301 VKQFYSSAA---YVPGQIILQEDIDEMEIIEKWLSGKRGTKTYIKVPRRGEKLKLVEMVS 357 Query: 360 TNAATALTSKLSQQSTV----HQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVV 414 NA L + + + L +L L + R +E +DIS+T + V S VV Sbjct: 358 KNALIELNQFKERIKKEAALAKEGMEKLKELLNLDRLPRRIEAYDISNTGSTEIVGSMVV 417 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD------------------ 456 F+ P +++YRR+ I I +DY +M +V+ RR +A + Sbjct: 418 FENGSPKKSDYRRFKIKSINVQNDYQSMQEVIFRRLKRAQKEMTEKDEGGGKDVGEKGAG 477 Query: 457 -SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG 515 +PDV+L+DGG G + ++V ELD + + G+ K + + Sbjct: 478 FGTLPDVLLVDGGTGHVNAVRSVLEELDFN-----IPVYGMVKDDNHRTRG----LVTGE 528 Query: 516 EGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKY 575 F L D L + I+DE+H A+ +RK RAK + S L+ IEGVGPKR++ L+++ Sbjct: 529 REFDLSKDIVLLRFVTAIQDEAHRFALEYNRKLRAKRYSGSVLDNIEGVGPKRKKELIRH 588 Query: 576 MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 G ++ ++ A EIAKV GIS+ LA+KI+ + Sbjct: 589 FGSVKAIKEAEPGEIAKVKGISRDLAQKIYDYFRQ 623 >UniRef50_B4RF25 UvrC, excinuclease ABC, C subunit n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RF25_PHEZH Length = 662 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 245/614 (39%), Positives = 366/614 (59%), Gaps = 21/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K ++ + +PGVYRM G V+YVGKA+ LKKR+ Y + +++ +V + + Sbjct: 57 IKDEVRRLPDRPGVYRMIGEDGEVLYVGKARSLKKRVLQYAQGRFHTQRIAHMVDLTRAM 116 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAK 125 + T TET+ALLLE N IK +PR+NVLLRDDKS+P I + P+L HRGA K Sbjct: 117 EFVTTRTETDALLLEINLIKQLKPRFNVLLRDDKSFPEIVIRRDHAAPQLRKHRGAHSIK 176 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G+YFGPF + +AV TL LQK F +R C +SVY R+RPC+ +QI RC PC GL+S Sbjct: 177 GDYFGPFASAWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIRRCSAPCT-GLISL 235 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y V+ FL GK V+ ++ M+ A+++LEFE AAR+RD+I+A+ V ++Q + Sbjct: 236 EDYNALVDEAGAFLRGKSRAVMERMAGEMQAAAEDLEFERAARLRDRIRALASVAQEQQI 295 Query: 246 SNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + D DV + + G ACV V F R G+ G+R+YFP+V E +V+ F+GQFY Sbjct: 296 NPETVDEADVFALHAEGGQACVQVFFFRAGQNWGNRAYFPRVDKSDEDPDVMGAFLGQFY 355 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + +P IL++ ++ LL+++ + +GRK+ + RG++ + ++ A TNA Sbjct: 356 DD----KPIPRMILVNVVPAECELLSEAFCQKSGRKVEISRPQRGEKRQIVQHALTNARE 411 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL K+++ S + L + L +R+E +D SH MG V +V G ++ Sbjct: 412 ALGRKMAESSAQSKLLAGVCEAFGLEGSPERIEVYDNSHIMGTNAVGGMIVAGPEGFQKS 471 Query: 424 EYRRYNIT--GITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQA 475 +YR++NI +TPGDDY M +VLRRR+ + + + + PD++LIDGG+GQL A Sbjct: 472 QYRKFNIRSSELTPGDDYGMMREVLRRRFSRLVKEEEEGGEAVRPDLVLIDGGRGQLDAA 531 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V A+L V + ++GVAKG DR AGLE F E F L P SP L+ +Q +RD Sbjct: 532 MEVMADLGV----DDIPVVGVAKGPDRDAGLERFFMPG-KEPFMLEPKSPVLYYLQRLRD 586 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR +RA + L+ I+GVGP R++ LL G +G+ ASV ++AKV G Sbjct: 587 EAHRFAIGSHRTRRAMDMKKNPLDEIDGVGPGRKRALLHTFGSARGVSRASVADLAKVEG 646 Query: 596 ISQGLAEKIFWSLK 609 +S+ LA++I+ Sbjct: 647 VSEALAQRIYDHFH 660 >UniRef50_C6MYN0 Excinuclease ABC subunit n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYN0_9GAMM Length = 620 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 288/620 (46%), Positives = 386/620 (62%), Gaps = 19/620 (3%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + + FL + ++PG+YRM D GTV+YVGKA +LKKR++SYF KT +LV+ Sbjct: 5 NPSLELTQFLAKLPNEPGIYRMLDQEGTVLYVGKAANLKKRVTSYFNKQNTGVKTRSLVS 64 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRG 120 QI I+++VT +ETEALLLE N IK +P+YNVLLRDDKSYP+I LS PR+ +R Sbjct: 65 QIASIEISVTRSETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSEHPDFPRIESYRS 124 Query: 121 AKHA-KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 K G +FGP+P+ AV+ET+ +QK+F IR C +S + RSRPCLQYQI RC PCV Sbjct: 125 KKKPLAGNFFGPYPSVTAVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCV 184 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 ++ +EY + V+ FL GK +L +L RME A NL FEEAA +RDQI+ +R V Sbjct: 185 H-YITSDEYQRSVQDAMRFLQGKSQLILDELAKRMEEAVLNLNFEEAAMLRDQIKNLRLV 243 Query: 240 TEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP---GGTEL---- 292 E+Q + D D I + G ACV + IR+GK+L S+S+FP VP E Sbjct: 244 QEQQGMMQLSGDADAIAIEVSPGFACVQCVTIREGKILASQSFFPSVPPNGLEEEPGLDD 303 Query: 293 --SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD 350 + + FV +YL + +P I+ D L L ++L++ G+ +Q PR Sbjct: 304 LWQQTFDAFVSFYYLGTPE--RIPPLIITDHALPTHQSLQEALTQQRGKSCKIQVSPRAA 361 Query: 351 RARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTV 409 ++R++ A N A+ +++ ST+ R L L L + RMECFDISHT GE T+ Sbjct: 362 KSRWMDFALNNLRVAIAEYVNKHSTMRSRFHELERFLALTKPIARMECFDISHTQGEATI 421 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGK 469 ASCVVFD+ GP + YRR+NI GITPGDDYAAM Q + RR+ + ++ +PD+++IDGGK Sbjct: 422 ASCVVFDSEGPNPSAYRRFNIEGITPGDDYAAMEQAITRRFKRLVEAQSLPDILIIDGGK 481 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQ+ A+ V A L+V+ LLGVAKG RKAG E L E +LP DS ALH+ Sbjct: 482 GQVTIAQRVLASLNVTT----VTLLGVAKGPSRKAGWEKLILVHEAREVTLPDDSKALHL 537 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 +QHIRDE+H AI HRKKR K + S+LE IEGVG KRRQ LL GGL+ L A +EE Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKKRLESTLEDIEGVGAKRRQALLHRFGGLRELAKAPLEE 597 Query: 590 IAKVPGISQGLAEKIFWSLK 609 IAKV GIS+ LA++IF Sbjct: 598 IAKVQGISEHLAQRIFQHFH 617 >UniRef50_D2RIL8 Excinuclease ABC, C subunit n=3 Tax=Veillonellaceae RepID=D2RIL8_ACIFE Length = 618 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 249/619 (40%), Positives = 348/619 (56%), Gaps = 30/619 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M+D K L + + PGVY M+DA G VIYVGKA LK R+ SYFR S K A+ Sbjct: 1 MND--AIKETLAVLPNAPGVYIMHDASGKVIYVGKAVILKNRVRSYFRPASQVSPKVRAI 58 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 A + I+ VT +E EAL+LE N IK Y+PRYN+ L+DDK+YP++ ++ G+ +PR+ + Sbjct: 59 NAHVASIETIVTASEMEALILECNLIKKYRPRYNIDLKDDKTYPYLKITVGEAYPRMVLT 118 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R Y+GPF + A+R+T+ L++ +FP+R C N N RPCLQY + RCL PC Sbjct: 119 RRVLKDGARYYGPFADAGALRDTMKLIRTMFPLRHCRN---LNAKRPCLQYHLHRCLAPC 175 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G V EY Q V+ V L L GK Q+ L ++M+ AS NLEFE AAR RD + ++R+ Sbjct: 176 T-GKVPVSEYRQMVDAVLLLLDGKVTQLEKDLTAKMQQASDNLEFEAAARYRDSLLSLRK 234 Query: 239 VTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 + EKQ + D DV+G+A D CV V FIR GK+LG S+F G EV+ Sbjct: 235 LAEKQKATTESGDRDVVGLAMDDSGVCVQVFFIRSGKILGRDSFFLDQEIGEPDGEVLGD 294 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKT--LLADSLSELAGRKINVQTKPRGDRARYLK 356 F+ Q+Y + + P EIL+ L+D LL LS L + +N+ RG + + Sbjct: 295 FLKQYYHENHR---PPREILVSAELADSDRTLLGQWLSSLCEKPVNLLVPQRGLKHDLVL 351 Query: 357 LARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVAS 411 +A NA L +L + T L L L + +RM+CFDISH G +TVAS Sbjct: 352 MAVNNAKKNLEERLRRGHASGQTGLDAAEQLQKALGLAKPLERMDCFDISHNQGRETVAS 411 Query: 412 CVVFDANGPLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKG 470 VVF P + +YRRY + DD+ +M +V+ RRY +P +I+IDGGKG Sbjct: 412 MVVFRDGVPSKKDYRRYKLRSTEGKPDDFKSMQEVVYRRYRDL---EDLPSLIIIDGGKG 468 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 QL+ A V L ++ ++G+AK E +F E L SPALH+I Sbjct: 469 QLSSACEVIRGLGIT--PEEVPVIGLAKRE------EEIFKEGAHTSILLDKMSPALHLI 520 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 QHIRDE+H AI HRK+ K S L+ +EG+GPKRR L K G L +R ASVE++ Sbjct: 521 QHIRDEAHRFAITYHRKRLGKRNLVSVLDHLEGLGPKRRAALWKRFGSLDAMRQASVEDL 580 Query: 591 AKVPGISQGLAEKIFWSLK 609 A V +++ +AE++ L+ Sbjct: 581 AAVDTMNRTVAERVHTFLQ 599 >UniRef50_B0K791 UvrABC system protein C n=11 Tax=Thermoanaerobacterales RepID=UVRC_THEP3 Length = 615 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 213/628 (33%), Positives = 352/628 (56%), Gaps = 37/628 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQI 63 + LK + +PGVY M D G +IYVGKA LK R+ YF++ K + +++ + Sbjct: 1 MTIEEKLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHV 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + VT TE EAL+LE N IK Y+P+YNVLL+DDK+YP+I ++ + +PR+ R + Sbjct: 61 EDFEYIVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIE 120 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVE 180 +YFGP+ + +AVRET+ L++K+FPIR C ++ + + R CL Y IG C PC Sbjct: 121 PDGAKYFGPYSSAFAVRETIKLVRKMFPIRTCNKNIEKDMGKVRECLYYHIGLCSAPCT- 179 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 +++E+Y + V+ LFL GK D ++ +L M+ A++ L FEEAARIRDQI A+ R + Sbjct: 180 NKINKEDYIKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTS 239 Query: 241 EKQFVSNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ V + G+D D+I +A A ++C+ V F+R GK+ G Y+ K G E E++ +F Sbjct: 240 EKQKVVSVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSF 299 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY +P EI+ D L + LL++ LS+ G K+ + RG + + + Sbjct: 300 IKQFYEG---APYIPKEIITDVELDESELLSEWLSQKRGNKVFITIPVRGKKKELVDMVY 356 Query: 360 TNAATALTSKLSQQSTVHQR--LTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 NA AL + +S + + + + L++++ L KR+E +DIS+T G+ V S VVF Sbjct: 357 QNALEALKNDISIREEISKAQVVLELSNLVGLDYAKRIEAYDISNTRGQDNVGSMVVFVD 416 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI----------------PD 461 P +++YR++NI + DDY +M +V+ RR+ AI++ ++ PD Sbjct: 417 GKPKKSQYRKFNIKYVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPD 476 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +I +DGG G + V + L +S + G+ K + + +P Sbjct: 477 LIFVDGGIGHVNAVLQVLSGLGIS-----IPVYGMVKDSKHRTRG----LVSPQGEIDIP 527 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 S A +I I++E+H AI H++K++K + S L I G+G KR + L ++ Sbjct: 528 MTSKAFRLIAQIQEEAHRFAITFHKEKQSK-RFKSELLNIPGIGEKRAKALYDAFKSIEE 586 Query: 582 LRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ ASVE++ KV G+++ A+ ++ + Sbjct: 587 IKRASVEDLKKVEGMNEKAAQAVYEYFR 614 >UniRef50_Q2RS75 UvrABC system protein C n=13 Tax=Alphaproteobacteria RepID=UVRC_RHORT Length = 639 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 244/614 (39%), Positives = 345/614 (56%), Gaps = 21/614 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 +A L+T+ S PGVYRM D G V+YVGKA++LK+R+ +Y + + + + ++A + Sbjct: 33 IRAALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTM 92 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 +V THTE EALLLE N IK +PRYN+LLRDDKS+P+I ++ PR+ RG Sbjct: 93 EVLTTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKG 152 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GEYFGPF + AV TL LQK F +R C ++V+ +RSRPCL +QI RC PCV+ V+E Sbjct: 153 GEYFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVD-RVAE 211 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 +Y VE R FLSG + L RM+ A+Q L++E+AA RD+I+A+ V Q + Sbjct: 212 ADYKALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDI 271 Query: 246 -SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 T + DVI G CV V F R G+ G+RS+FP G L EV+E F+GQFY Sbjct: 272 NLPTLGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFY 331 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 P EILL ++ L+ +L AG ++ + RG R + + A NA Sbjct: 332 AGF----PPPREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANARE 387 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL +L++ S L A L ++R+E +D SH G V VV G ++A Sbjct: 388 ALGRRLAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKA 447 Query: 424 EYRRYNIT--GITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQA 475 YR++NI ITPGDDYA M +V+ RR+ +A + PD++LIDGG GQL Sbjct: 448 AYRKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAV 507 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + AE+ V L+GVAKG DR AG E F F L + P L+ IQ +RD Sbjct: 508 REALAEIGV----EDVPLVGVAKGPDRDAGRERFFVPGRP-PFMLRHNDPVLYFIQRLRD 562 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AIG HR +R+K S L+++ G+G R++ LL + G + + A + ++ V G Sbjct: 563 EAHRFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEG 622 Query: 596 ISQGLAEKIFWSLK 609 IS LA+K++ Sbjct: 623 ISAALAKKLYDHFH 636 >UniRef50_A6BHR5 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BHR5_9FIRM Length = 617 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 208/627 (33%), Positives = 359/627 (57%), Gaps = 32/627 (5%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVA 61 + F+ + LK + +PGVY M+D +IYVGKA LK R+ YF+S+ K E +V Sbjct: 2 ENFNIQEELKKLPGKPGVYLMHDEKDAIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVT 61 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 I + + VT +E EAL+LE N IK ++P+YN +L DDK+YPFI ++ + PR+ M R Sbjct: 62 HISRFEYIVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTVNEPFPRVMMARR 121 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPC 178 K K +YFGP+ + AV++T+ L++K++ IR C S+ + + RPCL Y I +C PC Sbjct: 122 MKKDKAKYFGPYTSTGAVKDTIELIRKLYHIRSCNRSLPKDIGKERPCLNYHIHQCYAPC 181 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 +G +S EEY + ++ V FL+G D +L +L +M AS+NLEFE+A R+ + +V++ Sbjct: 182 -QGYISREEYRKSIDEVVRFLNGNYDPILKELEEKMLDASENLEFEKAIEYRELLASVQK 240 Query: 239 VTEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + +KQ +++T GDD D+I +A + A V V FIR G+++G ++ K+ SE++ Sbjct: 241 IAQKQKITDTAGDDRDIIAMASEGEDAVVQVFFIRGGRLIGRDHFYLKIAENDTKSEILS 300 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 +F+ QFY + +P E++L + D+ ++ + L+ K+ ++ +G + + ++L Sbjct: 301 SFIKQFY---AGTPYIPAELMLPEEIEDQEIIEEWLTTRREHKVRLRIPKKGTKEKLVEL 357 Query: 358 ARTNAATAL----TSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 A+ NA L ++ + L +L L + RME +DIS+T G +V S V Sbjct: 358 AQKNAQMVLKNDKERLKREEGRTIGAVKELEKILGLTGIIRMEAYDISNTNGFDSVGSMV 417 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------IPDVI 463 V++ P R +YR++ I + DDYA+MN+VL RR+ + + + PD+I Sbjct: 418 VYEHGKPKRNDYRKFKIKSVQGPDDYASMNEVLTRRFEHGLRERQDESETGGFQAFPDLI 477 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 ++DGG+GQ+ A V +L+ H + G+ K + + L+F + + Sbjct: 478 MMDGGRGQVNIALEVLEKLN-----QHIPVCGMVKDDNHRTRG--LYF--NNVELPIDRN 528 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 S +I I+DE+H AI HR+ R+K + S L+ I GVGP RR+ L++ ++ +R Sbjct: 529 SECFRLITRIQDEAHRFAITFHRQLRSKGQVHSILDDIPGVGPARRKDLMRSFENIEAIR 588 Query: 584 NASVEEIAKVPGISQGLAEKIFWSLKH 610 NA+V+++ ++P +++ A++++ Sbjct: 589 NATVDDLKELPSMNEKSAQEVYKFFHQ 615 >UniRef50_B2I637 UvrABC system protein C n=15 Tax=Xanthomonadaceae RepID=UVRC_XYLF2 Length = 621 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 304/617 (49%), Positives = 409/617 (66%), Gaps = 18/617 (2%) Query: 1 MSD----QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKT 56 M+D FD K F +++ PGVYRMY A T++YVGKA L+KR++SYF + + Sbjct: 1 MTDNAPITFDGKRFAAHLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRL 60 Query: 57 EALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLA 116 A++AQ+ ++DVT+T E EALLLE+ IK PRYNVLLRDDKSYP++ L+ + PR+A Sbjct: 61 TAMLAQVVRMDVTITRNEAEALLLENQLIKSLTPRYNVLLRDDKSYPYVLLTREAWPRIA 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 +HRG + G YFGP+P AVR+ L L+ K+F +R CE+SV+RNRSRPCLQYQIGRC Sbjct: 121 LHRGPQIVPGRYFGPYPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSA 180 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PCV +V+ + Y + V V LFL GK D + +LI M+ AS++LEFE+AAR+RD + ++ Sbjct: 181 PCV-NVVTHDNYTEAVHRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSL 239 Query: 237 RRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 R + +Q+V DLDV+ A +G ACV +L R G+ LG+R +FPK G +E++ Sbjct: 240 RSMQNRQYVDGRAADLDVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEIL 299 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 FV Q+Y + P EILLD + D TLL + S + KI+++ RG+RA Y++ Sbjct: 300 SAFVSQYYAEY----PPPPEILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVE 355 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVF 415 LA NA AL+++L+ Q R A+ +L L +KR+ECFDISHTMGE TVASCVVF Sbjct: 356 LAVRNAQVALSTELTSQRAQRVRSEAVRQLLGLEGPIKRVECFDISHTMGEATVASCVVF 415 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI---PDVILIDGGKGQL 472 DA GP+R++YRRYNITGITPGDDYAAM Q + RR+ +A+++ K PDV+ IDGG GQL Sbjct: 416 DAVGPVRSQYRRYNITGITPGDDYAAMRQAIERRFRRAVEEDKQGERPDVLFIDGGAGQL 475 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 AQAK + V LL+GV+KG +R+AG ETL +G+ SPAL IQ Sbjct: 476 AQAKMALNAVGV----ESVLLVGVSKGEERRAGHETLIML-DGQELHPGAASPALQFIQQ 530 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI GHR +R K + TS LE I G+G +RR LLK+ GGL G++ A EIA+ Sbjct: 531 VRDEAHRFAITGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIAR 590 Query: 593 VPGISQGLAEKIFWSLK 609 V GIS LA KI+ SL Sbjct: 591 VEGISTALAAKIYASLH 607 >UniRef50_C9KP10 Excinuclease ABC subunit C n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KP10_9FIRM Length = 623 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 231/612 (37%), Positives = 349/612 (57%), Gaps = 29/612 (4%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQID 67 LK + PGVY M DA G +IYVGKA LK R+ YF+ + S K +A+V+ I + Sbjct: 7 EKLKLLPDSPGVYIMKDANGRIIYVGKAVVLKNRVRQYFQHNKNHSPKVKAMVSHIADFE 66 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 + +TH+E EAL+LE N IK ++P YN+ L+DDKSYP++ ++ + +PR+ + Sbjct: 67 IIMTHSEVEALILECNLIKKHRPHYNISLKDDKSYPYVKVTVQEEYPRVFLTHRVTKDGA 126 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+ + AV ++L LL+K+FP+R C + + RPCL+Y I RCL PCV G V+EE Sbjct: 127 RYFGPYTDVTAVHQSLKLLRKLFPLRTCRHL----QERPCLEYHIKRCLAPCV-GKVTEE 181 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 +YA + V LFL G+ V +L RME A++ FE AAR+RDQ++AV+++ EKQ + Sbjct: 182 DYAAMIRAVLLFLEGRTADVERELKVRMEQAAEAFHFETAARLRDQLRAVQKIAEKQNIV 241 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 D D IG+A CV V FIR GK++G + + ++++ F+ Q+Y + Sbjct: 242 TGAGDQDAIGLARSEIGVCVQVFFIRAGKMIGREHFLLQGSEEESDADILAAFLSQYYHR 301 Query: 307 GSQMRTLPGEILLDFNLSDKT--LLADSLSELA-GRKINVQTKPRGDRARYLKLARTNAA 363 + +P EILL +++ LL L+E G K+ + RG + + +A +NAA Sbjct: 302 AA---FVPREILLPMAIAEAEQALLESWLTEKKQGTKVQLLLPQRGTKRDIVAMAESNAA 358 Query: 364 TALTSKLSQ----QSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 L + ++ + L L L ++ RMECFDISH G +TVAS VVF+ Sbjct: 359 KYLADEAARIKQADEKTMGAVRELGHYLGLKKMPYRMECFDISHIQGSETVASMVVFEGG 418 Query: 419 GPLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P +++YRR+ I DD+ +M +V RRY ++ ++P++I+IDGGKGQL+ A Sbjct: 419 LPKKSDYRRFKIQSTEGKPDDFLSMREVTTRRYVGLPEE-ELPNLIVIDGGKGQLSSALE 477 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 + ++G+AK E +F E E E LP S AL++I+ IRDE+ Sbjct: 478 IIRGAG---GHKDVPVVGLAKQ------FELVFKEGESEPVVLPRHSQALYLIERIRDEA 528 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI HRK R K S L+ I G+GPKRRQ L + G + +R ASVEE+ + PG++ Sbjct: 529 HRFAITYHRKLRGKRNLVSVLDHIVGIGPKRRQALRSHFGTIARIREASVEELQQAPGMN 588 Query: 598 QGLAEKIFWSLK 609 + AE ++ + Sbjct: 589 RPAAEAVYHFFE 600 >UniRef50_Q2G9G8 UvrABC system protein C n=2 Tax=Sphingomonadales RepID=UVRC_NOVAD Length = 658 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 233/612 (38%), Positives = 353/612 (57%), Gaps = 18/612 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + ++T+ +PGVYRM DA G V+YVGKA+ LK R+++Y + + +V+Q + + Sbjct: 53 IRETVQTLKPKPGVYRMLDARGDVLYVGKARALKNRVANYTQVERLPNRLRRMVSQTRSM 112 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 + T++E EALLLE IK ++P YNVLLRDDKS+PFI L GD PR++ HRGA+ AK Sbjct: 113 TIVTTNSEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLRGDHAFPRISKHRGARKAK 172 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G Y+GPF + +V T+ LQK+F +R C + R RPCL YQI RC PCV G +SE Sbjct: 173 GNYYGPFASAGSVNTTINALQKLFLLRSCNDGFMARRDRPCLLYQIRRCSAPCV-GRISE 231 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 +Y + V + FL GK V ++ ++M A+++L+FE AA +RD+++A + Q + Sbjct: 232 ADYGELVRQAKDFLGGKSGAVQREIEAQMHKAAEDLDFERAAMLRDRLRAATFIQGSQAI 291 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + G + DV +A G V FIR G+ G R++FP G EV+ +F+ QFY Sbjct: 292 NAEGVGNADVFAMATKGGQVAVQAFFIRGGQNWGHRAFFPSHTEGLSEEEVMTSFLAQFY 351 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + IL+D L + LLA++L E AG K+ + RGDR R ++ A+ NA Sbjct: 352 EEV----PPARLILVDRALPEADLLAEALCEAAGGKVEISVPQRGDRRRLMEQAQRNAVE 407 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL ++++ T + + LA L+LPEV R+E +D SH G + + VV G ++ Sbjct: 408 ALDRRMAESGTKAKVMRELAEFLELPEVPQRIEIYDNSHIQGTNALGAMVVAGPEGFVKG 467 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK------IPDVILIDGGKGQLAQAKN 477 +YR++NI DD+A M +V+ RR+G+A ++ PD++LIDGGKGQ++ K Sbjct: 468 QYRKWNIKLAQTNDDFAMMREVMTRRFGRAQEEDPDRESGNWPDLVLIDGGKGQMSAVKE 527 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 EL + L+ +AKG +F P+G LP +SP L +Q +RDE Sbjct: 528 ALGELGI----EDVPLVAIAKGPHHGREGREVFHFPDGREKMLPVNSPVLFQLQVMRDEV 583 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AIG HR KR++ S L+ I G+GP R++ LL + G +R AS+E++ + PG+S Sbjct: 584 HRFAIGAHRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAASLEDLQRAPGVS 643 Query: 598 QGLAEKIFWSLK 609 +A+ I+ Sbjct: 644 AAVAQTIYDFYH 655 >UniRef50_B7AWB5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AWB5_9BACE Length = 640 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 214/652 (32%), Positives = 350/652 (53%), Gaps = 60/652 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQI 63 FD + LK + S+PGVY M+D +IY+GKA LK R+ YF+S+ S K + +V+ I Sbjct: 2 FDIEEELKKLPSKPGVYIMHDKTDAIIYIGKAVSLKNRVRQYFQSSRNLSVKIQHMVSNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + +T +E EAL+LE N IK ++P+YN +L+DDKSYPFI ++ + +PR+ R K Sbjct: 62 DHFEYIITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEKYPRVLFARSMK 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN--RSRPCLQYQIGRCLGPCVE 180 K YFGP+ + AV++T+ LL +++ IR C + + + RPCL Y I +C PC + Sbjct: 122 KDKSRYFGPYTSAGAVKDTIELLCRLYRIRTCSRKLPADMCKDRPCLNYHINQCSAPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G +SEEEY + V V FL+G ++L +L +M AS +E+E+AA+ RD I +V+++ Sbjct: 181 GYISEEEYKESVRQVIDFLNGNYSEILNKLKDKMMEASDKMEYEDAAQYRDLITSVKQIA 240 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +KQ ++++ +D DVI A A V V FIR GK+LG + V E+V+ F Sbjct: 241 QKQKITDSDFEDRDVIACAIQGDDAVVQVFFIRGGKLLGREHFHMNVAASDSRMEIVQEF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+Y +PG I++ LS+K ++++ L+ G K+++ +G R + ++LA Sbjct: 301 MKQYYGG---TPYIPGIIMVQDELSEKDIISEWLTSRRGLKVSILVPKKGTREKMVELAF 357 Query: 360 TNAATAL----TSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA L ++Q + +A L L +KR+E +DIS+T G ++V S VVF Sbjct: 358 KNAQMVLDKDNERIKNEQKKTVGAMQEIADWLDLGTIKRVEAYDISNTNGIESVGSMVVF 417 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI---------------- 459 + P +YR++ I + DDY +M +VL RR+ + +++ +I Sbjct: 418 EDGRPKNNDYRKFRIKTVKGPDDYKSMREVLTRRFTRGMEERRILVEQEHKDRLLAEQEI 477 Query: 460 ----------------------PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 PD+I++DGG+GQ+ A +V EL + + G+ Sbjct: 478 VIDEAAGGETKEKIHLAGFNVYPDLIMMDGGRGQVNIALDVLNELGL-----DIPVCGMV 532 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 K + + + S +I ++DE+H AI HR R+K + +S Sbjct: 533 KDDNHRTRG----LYYNNVEIPIDRHSEGFKLITRVQDEAHRFAIEYHRSLRSKAQVSSV 588 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 L+ IEGVGP RR+ L+K+ + +RNA VEE+ + GI++ +A I+ Sbjct: 589 LDDIEGVGPARRKALMKHFLDINVIRNADVEELMQADGITRQVAGNIYRYFH 640 >UniRef50_B9KY82 Excinuclease ABC, C subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY82_THERP Length = 625 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 242/619 (39%), Positives = 352/619 (56%), Gaps = 30/619 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQ 65 + L + PGVY M DA G VIYVGKA L++RL SYF S+ + KT LV+QI Sbjct: 17 IQERLAALEPAPGVYLMKDAQGRVIYVGKASSLRQRLRSYFSSHSSMDAKTRELVSQIAD 76 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +V T T TEAL+LE+ IK Y+PR+N++LRDDK+YPFI ++ + PR+ R Sbjct: 77 FEVIRTDTPTEALILENELIKRYRPRFNIMLRDDKTYPFIRITNEPFPRVIATRRIVRDG 136 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+P+ AV TL LL+++FP R C+ + SR CL Y IGRC GPC+ G VS+ Sbjct: 137 SRYFGPYPSAGAVHRTLDLLKRLFPYRACDIEITGTASRACLYYHIGRCAGPCI-GAVSQ 195 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-F 244 EEY ++ V LFL G+ + V+ +L + ME A++ LEFE AARIRD+++A++ V ++Q Sbjct: 196 EEYRGIIDNVVLFLEGRAEAVVARLQAAMEEAAERLEFERAARIRDELRAIQHVLQQQKI 255 Query: 245 VSNTGDDLDVIGVAFD-AGMACVHVLFIRQGKVLGSRSYFPKVPG-GTELSEVVETFVGQ 302 V+ T + DV+ VA G ACV + F+R GK+LGS Y ++ +FV Q Sbjct: 256 VTGTDESFDVLAVAQSAGGDACVQIGFVRNGKLLGSEHYLMVGARIDDPPGAILTSFVQQ 315 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL----A 358 +Y Q S T+P E++L L D +A L+ + + G R +++ A Sbjct: 316 YYAQAS---TVPPELVLQHPLDDGETIAAWLAARRDGPVRLTVPDDGFRRELVEMIAKSA 372 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 N L+ + L LA L + + R+ECFD+S G VAS VVF+ Sbjct: 373 VQNLEQHRVRWLNDEQRTTLALEELADALGMDRLPRRIECFDVSQLQGTNVVASMVVFEH 432 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI------DDSKIPDVILIDGGKGQ 471 P +++YR++ I + DDYAA+ + + RRY +A+ +PD++LIDGGKGQ Sbjct: 433 GKPKKSDYRKFQIKTVEGQDDYAALREAVLRRYRRALSAEQTEAWQALPDLVLIDGGKGQ 492 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L+ A+ EL + + +AK E L+ + E LP DS AL ++Q Sbjct: 493 LSAAREALVELGL-----DLPIAALAKE------HEELYIPDQSEPIVLPRDSQALFLVQ 541 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H A+ HR +R + S L+ I G+GP+RR+ LL+ G ++G+R AS+EEIA Sbjct: 542 RVRDEAHRFAVTFHRARRTRSTIRSLLDEIPGIGPRRRRELLRRFGSVEGIRQASIEEIA 601 Query: 592 KVPGISQGLAEKIFWSLKH 610 VPGIS+ LAE+I L Sbjct: 602 AVPGISRALAERIKKELDE 620 >UniRef50_D1BLY6 Excinuclease ABC, C subunit n=5 Tax=Veillonellaceae RepID=D1BLY6_VEIPT Length = 608 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 219/617 (35%), Positives = 350/617 (56%), Gaps = 28/617 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEAL 59 M + + + + + PGVY D +IYVGKA +L+ R+ SY R++ K A+ Sbjct: 1 MPSE-ELLEKVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAM 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 + + ++V T TE EAL+LE+ IK ++P+YN+ LRDDK+YP++ +S + +PR+ M Sbjct: 60 MKRAVDVEVIQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMT 119 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R + +YFGPF + +V L L+++ +P+R C++ RPCLQY + C PC Sbjct: 120 RRLERDGAKYFGPFTDVTSVHVVLKLIRQYYPLRTCKSM---KVERPCLQYHMHYCEAPC 176 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 +S +Y + ++ + GK +L ++ S+ME A+++L FE+AAR RDQ+ ++ + Sbjct: 177 F-NKISVPDYRKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEK 235 Query: 239 VTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 + EKQ + DLDV+G+A D MACV +LFIR G++LG +YF + G + ++ Sbjct: 236 IQEKQRMVTQRGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSS-ETIMTD 294 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ Q+Y +P E+LL +D+ LL + ++L G+ ++V RG + +K+A Sbjct: 295 FIKQYYGD---TNFIPKELLLPMESTDRDLLTEWFTQLKGQHVDVSVPQRGYKMDMIKMA 351 Query: 359 RTNAATALTSKLSQQSTVHQ----RLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 NA T L + Q + LA +L LP + RMECFDISHT G +TVAS V Sbjct: 352 HENAETFLEERRRQWQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGAETVASMV 411 Query: 414 VFDANGPLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 VF+ P + EYRR+ + DD+ +M +++ RRYG D +PD+I+IDGGKGQL Sbjct: 412 VFEGGKPAKKEYRRFKLKTTQGKPDDFKSMAEIMERRYGNETDW-PMPDLIIIDGGKGQL 470 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A + + V+ ++ +AK +E +F E + E L +P L ++Q Sbjct: 471 NAALPLIRAVGVT----DVPVISLAK------RIEEVFVEGQSESIILSHHTPELQLLQQ 520 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H AI HRK R K S L+ IEG+GPKRR+ L + L+ ++ AS++E+A Sbjct: 521 IRDEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELAN 580 Query: 593 VPGISQGLAEKIFWSLK 609 V ++ AE ++ + Sbjct: 581 VESMNYKTAETLYNFFR 597 >UniRef50_B6IZT9 UvrABC system protein C n=6 Tax=Coxiella burnetii RepID=UVRC_COXB2 Length = 609 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 303/608 (49%), Positives = 409/608 (67%), Gaps = 9/608 (1%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + AFLKT+ + GVY+M DA G VIYVGKA++L+KR+SSYFR KT+A++AQ+Q Sbjct: 5 NPSAFLKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRR-QLDSKTQAMMAQVQS 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHA 124 I T+T E EALLLE ++IK ++PRYNVLLRDDKSYP+++L + PRL +RGAK A Sbjct: 64 IQTTITRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKA 123 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G YFGP+PN +VRE LAL+QK+F +RQC S ++NR+RPCLQYQI RC PCV G V+ Sbjct: 124 PGRYFGPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCV-GYVN 182 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E+EY +QVE LF GK+DQV+ +L RME AS+NL FEEAA RDQI+ +RR+ ++Q Sbjct: 183 EQEYRRQVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQI 242 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 ++ ++D+IG+A G +LFIR G+++G + +FP P GT L + F+ Q+Y Sbjct: 243 ITGGKGNIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYY 302 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 L + +P I+ L D+ + +LS RK+ + + R ++ +A NAA Sbjct: 303 LSPLRNGDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQ 362 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL+ L+Q++T +L A+ L LP R+ECFDISHT+GE TVASCVVF GP++ Sbjct: 363 ALSQHLAQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKK 422 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNVFAEL 482 +YRR+NI+G+TPGDDY A+ Q L RRY + + + +PDV+LIDGG GQL QA V EL Sbjct: 423 DYRRFNISGVTPGDDYGALRQALTRRYVRLKEGEGILPDVLLIDGGMGQLRQAAEVLEEL 482 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 VS +L +AKG RKAGLE LF E LP D+ A H+IQ IRDE+H AI Sbjct: 483 QVSG----VILTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRDEAHRFAI 538 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 H +RAK + S+L+ IEG+GPKRRQ LLKY GGLQ L+ AS+EEIA+VPG+S+ LA+ Sbjct: 539 TAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAK 598 Query: 603 KIFWSLKH 610 I+ Sbjct: 599 AIYDDCHQ 606 >UniRef50_Q21AW5 UvrABC system protein C n=89 Tax=Alphaproteobacteria RepID=UVRC_RHOPB Length = 699 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 242/623 (38%), Positives = 352/623 (56%), Gaps = 30/623 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 ++ + PGVYRM +A V+YVGKAK++KKRL+SY R + ++A + Sbjct: 83 IAQAVRLAPTSPGVYRMLNAASDVLYVGKAKNVKKRLASYARPTGHVVRISRMIAATVSV 142 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTH-PRLAMHRGAKHAK 125 ++ T TETEALLLE N IK +PR+NVLLRDDKS+P+I ++GD P++ HRGA+ Sbjct: 143 EIISTATETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQIIKHRGAQSRP 202 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGPF + +V T+ LQ+ F +R C ++ + +R+RPCL YQI RC GPC G + Sbjct: 203 GRYFGPFASVGSVNRTITALQRAFLMRSCTDAFFESRTRPCLLYQIKRCAGPCT-GEIDF 261 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y V FLSG+ V +L ME AS LEFE AA RD++ A+ + +Q + Sbjct: 262 PGYTALVREATDFLSGRSRLVKQELAGEMEKASAELEFETAALYRDRLAALSAIQSQQGI 321 Query: 246 SN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + T ++ DV + + G CV V F R G+ G+R+YFP+ + EV+ F+ QFY Sbjct: 322 NPRTVEEADVFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKTFTVEEVLAAFLAQFY 381 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + P +ILL + + LLA++L +G K+ + T RG++ + A TNA Sbjct: 382 DDKA----PPKQILLSHRIEECELLAEALCIKSGHKVEILTPQRGEKKELVGHALTNARE 437 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 AL KL+ +T + L L + LKLP R+E +D SH G V + +V +G ++ Sbjct: 438 ALGRKLADTATQTRLLQGLVTTLKLPHTPKRIEVYDNSHIQGTNAVGAMIVAGPDGFIKN 497 Query: 424 EYRRYNIT--GITPGDDYAAMNQVLRRRYGKAI---------------DDSKIPDVILID 466 +YR++NI GITPGDDY M +VL RR+ + + + + PD+++ID Sbjct: 498 QYRKFNIRSEGITPGDDYGMMREVLERRFKRLLAPPPEAEAGKPKPDDEVPQWPDLVIID 557 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GG+GQL + +F L +S L+ VAKG DR AG ETLF L P P Sbjct: 558 GGRGQLNAVQEIFQALGLST----VTLMAVAKGPDRDAGRETLFMPDRL-PIKLEPRDPV 612 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L+ IQ +RDE+H IG HRK R K + L+ I G+GP R++ LL + G L+ + AS Sbjct: 613 LYFIQRLRDEAHRFVIGSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERAS 672 Query: 587 VEEIAKVPGISQGLAEKIFWSLK 609 + ++ KVPGIS A++IF Sbjct: 673 LGDLGKVPGISAESAKRIFDYFH 695 >UniRef50_A0L8U4 Excinuclease ABC subunit C n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8U4_MAGSM Length = 617 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 260/623 (41%), Positives = 373/623 (59%), Gaps = 22/623 (3%) Query: 1 MSDQ--------FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NL 51 M+D K +K + +PGVYR YD G ++YVGKAK L+KR+SSYF Sbjct: 1 MNDPCESHEARLQRLKRDVKQLPLKPGVYRFYDDAGQLLYVGKAKALRKRVSSYFNHLAG 60 Query: 52 ASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GD 110 S KT +V QI +++ T T E +AL+LE N IK +QPRYNVLL+D+KSYP++ L+ Sbjct: 61 HSPKTVVMVKQIMRLEFTTTANENDALVLEANLIKAHQPRYNVLLKDNKSYPYLHLTTDH 120 Query: 111 THPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQ 170 +PRLA++RG + A+G +FGP+P+ +AVRETL LQKIFP+RQCE+S + +RSRPCLQYQ Sbjct: 121 AYPRLALYRGDRKARGRFFGPYPSAHAVRETLNWLQKIFPVRQCEDSQFNHRSRPCLQYQ 180 Query: 171 IGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIR 230 I RC GPC + + Y V V LFL GKD Q++ L M A+Q +FE AAR+R Sbjct: 181 IHRCGGPCCD-RIDVTSYGAMVSQVTLFLEGKDKQLVNTLKEAMWQAAQARDFEGAARLR 239 Query: 231 DQIQAVRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG 289 D+I + V E++ ++ +G+ DLDV+ VA A V V FIR G LG+R++F + Sbjct: 240 DRIAGIEHVQERRRLNLSGEIDLDVMSVAVGLKKAVVQVFFIRAGINLGNRAFFLERGEE 299 Query: 290 TELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 + SE+++ FV QFYL + P EILL+ + +L ++LS G+ + ++ RG Sbjct: 300 DDPSEILQAFVSQFYLD----KPPPPEILLEHLPQQQEMLEEALSARLGKAVKLRQPQRG 355 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQT 408 +R R L++A NA AL S + V +L AL + L E R+E +D SH + Sbjct: 356 ERRRLLEMAVENAQQALKQYQSSRDHVRTQLEALQELFNLAEPPQRIEIYDNSHIQDQHA 415 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDG 467 V + VVF A+G + +YR++N+ + DD A M +VL RR+ + + + + PD++L+DG Sbjct: 416 VGAMVVFGADGFEKNQYRKFNLEASSAPDDTARMIEVLTRRFKRLKEGEGRWPDLVLLDG 475 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G QL A V EL + +AKG R AG E LF LP D+P L Sbjct: 476 GIAQLNAAMKVVEELQIDG----VAFSAIAKGPQRHAGREQLFLPDRPNPLILPHDAPLL 531 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 H +Q +RDESH IG HR +RAK + +S L+ I GVG +R++ L+K G ++G+R A++ Sbjct: 532 HFLQVVRDESHRFVIGYHRTRRAKGQTSSRLDGIAGVGAQRKKALIKQFGSVKGVRQATL 591 Query: 588 EEIAKVPGISQGLAEKIFWSLKH 610 EIA +PG S LA I +L Sbjct: 592 AEIAALPGFSTELAATILATLDE 614 >UniRef50_B0VLX1 UvrABC system protein C n=17 Tax=Moraxellaceae RepID=UVRC_ACIBS Length = 599 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 276/611 (45%), Positives = 396/611 (64%), Gaps = 17/611 (2%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + + + L +T PGVY+M G ++YVGKAK+LK R+SSYF + KT+ALVA Sbjct: 4 NARPHIEKILANLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVA 63 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRG 120 +I I+ VT +ETEALLLE N IK ++P YN++LRDDKSY +IF+S D +PR+A RG Sbjct: 64 RIYDIETLVTRSETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRG 123 Query: 121 A-KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 KH G++FGP+P+ Y+ R+TL +LQK+F +RQCENS + R RPCLQYQI RC PCV Sbjct: 124 KGKHQIGKFFGPYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCV 183 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 GLVS E+Y + V FL G ++ +LI++ME A+ +LEFE+A RD++ +R V Sbjct: 184 -GLVSPEDYKEDVNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREV 242 Query: 240 TEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +Q V + D++ + + AG+ CV ++ +R G++LG +SYFP + G +L +++ F Sbjct: 243 QAQQAVFKVKGEADILAITYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDF 301 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + FY Q + +P E++++ L D+ L ++L++ G+K+ +++ R RA +L+LA Sbjct: 302 MANFYFQVAD--EVPSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAE 359 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANG 419 N A+ +LS +++R L V+ P + R+ECFDISHTMGE +ASCVVFD G Sbjct: 360 MNVQHAIKGQLSNHLELNERFHQLEQVVGRP-IDRIECFDISHTMGEAPIASCVVFDQGG 418 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 + +YR++ I IT GDDYAAM Q L RRY KA+ +PD++LIDGGKGQL A V Sbjct: 419 ARKRDYRQFAIQDITAGDDYAAMRQALTRRYKKAM----LPDLLLIDGGKGQLHMAMEVM 474 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL + ++GV+KG RK GLETL F +G LP DS ALH+IQ +RDE+H Sbjct: 475 QELGLEAF-----MVGVSKGEGRKPGLETLHFT-DGTKIQLPEDSKALHLIQQVRDEAHR 528 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR KR K ++TS LE I G+GPKRR+ LL + GG+QG+ AS +E+ VPG+ + Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 588 Query: 600 LAEKIFWSLKH 610 +A I+ L Sbjct: 589 MARTIYKILHE 599 >UniRef50_B5EPN1 Excinuclease ABC, C subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPN1_ACIF5 Length = 623 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 277/609 (45%), Positives = 391/609 (64%), Gaps = 13/609 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F FL+T+TSQPG+Y+M+ G ++YVGKA++L++R+SSYF+ + KT A++AQ+ Sbjct: 20 FVPGEFLRTLTSQPGIYQMFGQGSRLLYVGKARNLRRRVSSYFQKQRHTPKTLAMLAQVT 79 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKH 123 +++V VTHTETEAL+LE N IK + P YN+LLRDDKSYP++F+ +G PR+++HRGA+ Sbjct: 80 RVEVVVTHTETEALVLEANLIKRHHPPYNILLRDDKSYPYLFIETGHGTPRMSLHRGAQK 139 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 KG YFGP+P A+RE++ LLQK F +R CE+ + +RSR CLQ+QI RC GPCV G + Sbjct: 140 GKGHYFGPYPAVTALRESMVLLQKAFRLRTCEDHTFHHRSRACLQFQIRRCSGPCV-GHI 198 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S E+YA+ V FL GK D+ + L RM+ A++ L+FEEAAR RDQI A+ ++ E+Q Sbjct: 199 SGEDYARDVADTIRFLEGKSDEAIRSLGERMQAAAEQLDFEEAARRRDQIAALSKIQERQ 258 Query: 244 FVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 +V+ G D DV+ A + G V+V FIR G+ LG RS FP+ +V+ F+ Q Sbjct: 259 YVAQAGGGDFDVLAAAQENGQWVVYVSFIRNGRQLGGRSVFPRHTEEVRAPDVLAAFLMQ 318 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 FY + +PG +L++ T LA++L AG ++ + RG R R++ LA TNA Sbjct: 319 FYSD----KEVPGNLLVNVLPRSPTSLAEALGSEAGHRVMIDQPQRGPRKRWMALALTNA 374 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPL 421 AL + +R+ L + +LPE+ R+ECFDISHT GE VASCVVF +G L Sbjct: 375 MGALRQRTQTAGAGRRRMLLLQELFQLPEIPQRVECFDISHTRGEVAVASCVVFGDDGAL 434 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA 480 + EYRR+NI I GDDYAAM Q + RRYG+ + +P+++ IDGG GQ+A+A+ Sbjct: 435 KNEYRRFNIRDIRGGDDYAAMEQAVHRRYGRLQKEGLALPEIVFIDGGAGQVARAQAALD 494 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L++ L GVAKG R+ GLE L L D PAL VIQ IRDE+H Sbjct: 495 ALEIGC----IQLCGVAKGTTRRPGLEMLHIPGWAVPRQLDDDDPALLVIQEIRDEAHRF 550 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI GHR +R K + S L+ I G+GPKRR LL+ GGL+G+R+A +E++ +V GI L Sbjct: 551 AITGHRARRGKARQESDLDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLEL 610 Query: 601 AEKIFWSLK 609 A++I+ Sbjct: 611 AQRIYDFFH 619 >UniRef50_B8FHR2 UvrABC system protein C n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=UVRC_DESAA Length = 603 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 233/608 (38%), Positives = 358/608 (58%), Gaps = 14/608 (2%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQ 64 + + L T+++ PGVY M D G +IYVGKA+ LKKR+SSYF KT LV +I Sbjct: 3 EIEKKLATLSNGPGVYLMKDESGEIIYVGKARSLKKRVSSYFLEKPNRDLKTGILVKKIA 62 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 D + TE EAL+LE N I+ ++PRYN+LL+D K +P + + ++PRL + R K Sbjct: 63 SFDAILVTTEKEALILEANLIRKHKPRYNILLKDGKRFPSLRIDVRTSYPRLEVVRKVKK 122 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 YFGPF + +R TL ++ K F +R+C+ R+RPCL YQ+G+CLGPC V Sbjct: 123 DGAIYFGPFSSAGKLRSTLKIINKTFQLRKCKQKEPPKRNRPCLNYQMGQCLGPCCL-PV 181 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +EY V V LFL G+ + +L ++ +M AS+ E+E AAR+RD++ A++ EKQ Sbjct: 182 DRDEYLDMVNEVILFLKGRTNDLLQKIKEQMAAASERQEYELAARLRDRMFAIQATVEKQ 241 Query: 244 F-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V+ D DVIG+ + + + VL+IR G +LGSR+Y GT+ SE ++ F+ Q Sbjct: 242 AAVTTDFVDRDVIGIDREPEGSAISVLYIRGGFLLGSRNYNFDEVLGTD-SESIQAFLRQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y + R +P E+ + L + L+ L+E A +++ + RG++ R +++A NA Sbjct: 301 YYD---KDRFIPDEVFVPCQLENMELMEQWLTETAEKRVVLHWPQRGEKTRLIEMANENA 357 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPL 421 AL ++S ++ L L L++ R +ECFDISHT G QTVAS +VF+ Sbjct: 358 HEALKDRISSENVFKSLLERLQKRLRMDRPPRRIECFDISHTGGNQTVASMIVFEDGKEA 417 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAE 481 ++EYR +NI + DDYAAM++V+ RR+ D PDV+LIDGGKGQL+ +V Sbjct: 418 KSEYRTFNIDSLDHPDDYAAMHEVMARRFSPDKDW-PTPDVLLIDGGKGQLSITASVLDG 476 Query: 482 LDVSWDKNHPLLLGVAKGAD-RKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L V ++ +AK + +K ++ ++ + D L +Q +RDE+H Sbjct: 477 LGVMGAFE---VISIAKKDEAKKETMDKIYRPGQANPVVFGRDGDVLLFLQRVRDEAHRF 533 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HRKKRAK S+L+++ G+G KR++ LL++ G ++ L+ AS E+IA+VPGIS Sbjct: 534 AITTHRKKRAKTIRKSALDSVPGIGEKRKKALLRHFGSIKRLKEASPEDIAQVPGISVKR 593 Query: 601 AEKIFWSL 608 A++I +L Sbjct: 594 AQEILEAL 601 >UniRef50_A6SXR9 UvrABC system protein C n=19 Tax=Betaproteobacteria RepID=UVRC_JANMA Length = 618 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 290/625 (46%), Positives = 400/625 (64%), Gaps = 27/625 (4%) Query: 2 SDQFDAKAFL----KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 +D D +A + + + PGVYR +DA ++YVGKA+DLKKR+SSYF NLAS +T Sbjct: 4 TDAPDPRAIVLETVAKLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNLASPRTA 63 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAM 117 +V +I +++ TVT +E EALLLE+N IK QPRYN+L RDDKSYP++ ++G +PR+A Sbjct: 64 LMVERIARLETTVTRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQEYPRMAY 123 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 +RGA K +YFGPFP+G+AV+E++ +LQK+F +R CE+SV+ NR+RPCL +QI RC GP Sbjct: 124 YRGAVDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSGP 183 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 CV +S+E+YA VE FL G+ +VL L +M ++ L+FE+AA +R+QI A+ Sbjct: 184 CV-NFISKEDYALDVENAAKFLRGRQSEVLETLQGKMLAYAEELKFEQAALVRNQINALS 242 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVP-------GG 289 RV +Q + GD D+D+I V G ACV++ +R G+ LG R+YFP Sbjct: 243 RVLHQQSMETGGDADIDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALASAEE 302 Query: 290 TELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 + +EV++ F+ Q Y++ + +PG ++L+ + + L+ + E G +INV +P+G Sbjct: 303 SIATEVMKAFLAQHYIE----KFIPGTLILNTEMDEPELMLALM-EQCGHRINVVFQPQG 357 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMG 405 R ++L++A A +L LS+Q + R L L + R+ECFDISHT G Sbjct: 358 QRRQWLEMAHKGAEISLARLLSEQGSQQARTRMLVDALGIDVPDLESFRVECFDISHTQG 417 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVIL 464 E T ASCVVF + EYRRYNI ITPGDDYAAM QVL RRY K A D +PDV+L Sbjct: 418 EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLLRRYEKVANGDGVMPDVVL 477 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 IDGGKGQ+ A+ VF EL + ++GVAKG RK GLETL F L +S Sbjct: 478 IDGGKGQVEMARQVFVELGLDISL----IVGVAKGEGRKVGLETLVFVDGRPPQELGKES 533 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 AL +I IRDE+H AI G R KRAK + TS LE IEG+G KRRQ LL GGL+G+ + Sbjct: 534 GALMLIAQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVD 593 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLK 609 AS+E++A V GIS+ LAE I+ L Sbjct: 594 ASIEDLASVEGISRQLAEDIYKQLH 618 >UniRef50_Q180Q8 UvrABC system protein C n=8 Tax=Clostridiales RepID=UVRC_CLOD6 Length = 605 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 202/617 (32%), Positives = 342/617 (55%), Gaps = 29/617 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQI 63 FD + LK + S+PGVY M D +IYVGKA LK R+ YF+S+ + K +++V I Sbjct: 2 FDIQEHLKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + +T +E EAL+LE N IK Y+P+YNV+LRDDK+YP+I ++ + +PR+ R Sbjct: 62 YKFEYIITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVL 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR---NRSRPCLQYQIGRCLGPCV 179 K +YFGP+ N AV +TL L+ +PIR C+ + + N++RPCL I +CLGPC Sbjct: 122 KDKAKYFGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCT 181 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G VS+EEY + +E + + LSGK+++++ L +M +S N FEEAA RD+I+++ + Sbjct: 182 -GNVSKEEYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEM 240 Query: 240 TEKQFVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 +KQ + T DL DV+ +A ACV V FIR GK++G + + + + ++ Sbjct: 241 IQKQKIDATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILS 300 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 +FV QFY + +P E++++ + D ++L + LS G+K+ ++ +G++ +++ Sbjct: 301 SFVKQFYNEQE---YIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEM 357 Query: 358 ARTNAATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASC 412 R NA L + L L +L L ++ R+E +DIS+ G ++ S Sbjct: 358 VRKNAVEYLEKFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSM 417 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 VV+ + EYRRY I + +DY +M +++ RR +PD+IL+DGGKGQ+ Sbjct: 418 VVYTNAKKDKKEYRRYKIKTVIGPNDYDSMAEIVDRRLKHGN----LPDLILLDGGKGQV 473 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + K V + L G+ K + + + L + I Sbjct: 474 SAVKKVLE-----LNDVDIPLWGMYKDDKHRTKG----LICKEKEIELDKTTNLYRFIAS 524 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 I++E H++AI HR R K S L+ I+G+G KR++ LL + + ++ A++EE+ + Sbjct: 525 IQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVDAIKKATMEELLE 584 Query: 593 VPGISQGLAEKIFWSLK 609 V G+++ +A+ ++ + Sbjct: 585 VDGMNKSIADNVYNFFR 601 >UniRef50_C9LR57 Excinuclease ABC subunit C n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR57_9FIRM Length = 625 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 213/612 (34%), Positives = 332/612 (54%), Gaps = 27/612 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQ 65 +A + + PGVYR D G VIYVGKA +LK R+ SY R S K A++ Sbjct: 8 IRAKVDALPDSPGVYRWKDKDGRVIYVGKAVNLKNRVRSYLREDKNRSPKVAAMIRHAAD 67 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG-AKH 123 +D+T+T TE EAL+LE N IK P+YN+ LRDDKSYP++ ++ + PR+ + R + Sbjct: 68 LDITMTATEMEALILECNLIKELHPKYNISLRDDKSYPYVKITVNEKWPRILVTRNIRRD 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +YFGPF + ++R+TL+L+++++PIR C + SRPCLQY + C PC Sbjct: 128 DGAKYFGPFTDVGSLRKTLSLIRRLYPIRTCRSM---KVSRPCLQYHMNLCCAPCW-NHC 183 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +EE+Y + V GK+ +++ L ME+AS+ + FE AA +RDQ+ AV+ V ++Q Sbjct: 184 TEEQYHEYVVKTCDLFEGKNTELVKALQKDMESASEEMNFERAAVLRDQLHAVQSVQQRQ 243 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + + D DV+G++ A + + +IR GK++G + +++ F+ F Sbjct: 244 NIVSKEGDFDVVGMSRLDEHAGLEIFYIRYGKMVGKENLSIPDSLHETDEDIIAAFIKNF 303 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y G+ ++P EI+L + LL LS+L + + RG + R +A++NAA Sbjct: 304 Y--GANPSSVPKEIILPILPQESLLLTAWLSKLRNGDVKIYVPERGFKRRLKDMAQSNAA 361 Query: 364 TALTSKLSQQS----TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 L K Q + L +L LP++ R+ECFDISH G +T S VVF++ Sbjct: 362 KYLADKKLQWEYQDAREQGAVNKLKELLHLPKLPERIECFDISHNQGAETTGSMVVFESG 421 Query: 419 GPLRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P + EYRR+ + DD+ +M +V+ RRYG PD+I++DGGKGQL A Sbjct: 422 RPNKKEYRRFKLQSTQGTPDDFKSMAEVMARRYGIETKW-PRPDLIVLDGGKGQLDAALP 480 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 V + ++G+AK +E ++ E + + + P PAL ++Q IRDE+ Sbjct: 481 VIRSCGI-----DTPVIGLAK------RMEEIYVEGQTDPIIIDPHEPALQLLQFIRDEA 529 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H I HRK K S L+ I G+GP+RR L L +RNA+VEE+ +V G++ Sbjct: 530 HRFVITYHRKWTTKRNTESILDHIAGIGPQRRNALWHAFRSLDEMRNATVEELTRVKGMN 589 Query: 598 QGLAEKIFWSLK 609 + AE +F + Sbjct: 590 KTAAENVFRFFR 601 >UniRef50_A9KSS0 UvrABC system protein C n=59 Tax=Firmicutes RepID=UVRC_CLOPH Length = 628 Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 218/630 (34%), Positives = 351/630 (55%), Gaps = 38/630 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQI 63 FD LK + ++PGVY M++ +IYVGKA LK R+ YF+S+ S K + +V+ I Sbjct: 2 FDLDEELKKLPAKPGVYIMHNNKDEIIYVGKAISLKNRVRQYFQSSRNLSTKIQQMVSNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + +E EAL+LE N IK ++P+YN +L+DDKSYP+I ++ + +PR+ R K Sbjct: 62 DHFEYIIVDSEMEALVLECNLIKEHRPKYNTMLKDDKSYPYIKVTVNEAYPRVLFARQQK 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS--RPCLQYQIGRCLGPCVE 180 K +YFGP+ + AV++ L LL++++ IR C ++ ++ RPCL Y I +C PC + Sbjct: 122 KDKAKYFGPYTSLGAVKDILDLLRRLYFIRTCNRNLPKDIGLERPCLYYHIKQCKAPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G +SEEEY + ++ V FL+G V L ++M+ AS+NLEFEEAA RD I +V +++ Sbjct: 181 GYISEEEYRKSIDEVIEFLNGNYALVTKDLQAKMKAASENLEFEEAAGYRDLILSVEKLS 240 Query: 241 EKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +KQ S+ G D D+I A A V FIR GK+LG Y S ++ F Sbjct: 241 QKQKASDVDGVDRDIIAFASTGDEAVAQVFFIRDGKMLGREHYHITGVANESRSSIMTNF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 V QFY + +P E+LL L ++ L+++ LS G+K+ + +GD+ R ++LA Sbjct: 301 VKQFY---AGTPYIPRELLLSEPLEEEELISEWLSTKRGQKVRIHVPKKGDKERLVELAE 357 Query: 360 TNAATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA+ L +++ + +A +L LP + RME FDIS+T G ++V S VV+ Sbjct: 358 KNASLVLQQDSDKIQREEAKTIGAVRHIADMLSLPGIYRMESFDISNTNGFESVGSMVVY 417 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------------I 459 + P R +YR++ I + DDYA+M +VL RR+ +++ Sbjct: 418 ENGKPKRNDYRKFKIKSVQGPDDYASMREVLTRRFSHGQKEAEELAKKNIDISHGSFTRY 477 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD+IL+DGG+GQ+ A V EL ++ + G+ K + + L+F + Sbjct: 478 PDLILMDGGRGQVNIALEVMNELKLT-----IPVCGMVKDDNHRTRG--LYF--DNVEIP 528 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 + S A +I I+DE+H AI HR R+K + S L+ I+GVG RR+ L+K+ + Sbjct: 529 IDTHSEAFRLITRIQDETHRFAIEYHRSLRSKAQVHSILDDIDGVGQTRRRALMKHFASI 588 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ AS+E++ VP +++ A K++ Sbjct: 589 DAIKAASMEDLMAVPSMNKLSAAKVYEFFH 618 >UniRef50_Q47Z18 UvrABC system protein C n=274 Tax=Gammaproteobacteria RepID=UVRC_COLP3 Length = 639 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 334/625 (53%), Positives = 433/625 (69%), Gaps = 21/625 (3%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + FD++AFL+ VT Q GVYRMYD+ VIYVGKAK LKKRL+SYFR ++ S KT+ LV Sbjct: 17 ASTFDSEAFLRVVTEQAGVYRMYDSKQVVIYVGKAKQLKKRLASYFRKDVGSVKTQVLVK 76 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 QI I+VTVTHTE EAL+LE+NYIK YQP+YN+LLRDDKSYP++ ++ HP+L +HRG Sbjct: 77 QIAAIEVTVTHTEGEALILENNYIKKYQPKYNILLRDDKSYPYLLITAHKHPKLGLHRGG 136 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K KGEYFGPFP AV E+L L+QKIFPIRQCE+S YR RSRPCLQ+Q+GRC PCV+ Sbjct: 137 KKVKGEYFGPFPTVGAVWESLRLMQKIFPIRQCEDSYYRARSRPCLQHQLGRCSAPCVD- 195 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S ++Y +QV +LFL GK V+ QL++RME AS L FE AA+ RDQI +R+V + Sbjct: 196 KISVDDYKEQVNLAKLFLQGKSSAVIEQLVARMELASNELHFELAAKYRDQIVTLRKVQQ 255 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 +Q VS +LDV+G+ D C+H+LFIRQ K+LGS+SYFP VP + SE+++ F+ Sbjct: 256 QQHVSGHVAELDVVGLYRDKTQVCIHLLFIRQHKILGSKSYFPTVPSESSDSEILQAFIA 315 Query: 302 QFYLQGSQ------MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 Q YL ++P EI++ ++ LA LSE A + + T R +RA+YL Sbjct: 316 QHYLSNEMLSHGKVQSSIPKEIVIKESIEQVVELARLLSEQAEYDVKISTNTRSERAQYL 375 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVV 414 KLA TNA TAL ++ S + ++ R AL V +L ++R+ECFDISHTMG+QTVAS VV Sbjct: 376 KLAGTNAHTALVTRNSHKESMQARFVALNEVFELENGIQRIECFDISHTMGQQTVASNVV 435 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----------KIPDVIL 464 F+ GPL+ +YRRYN+ GITPGDDYAAM L +RYGK + K+PD++ Sbjct: 436 FNQEGPLKTDYRRYNVFGITPGDDYAAMAFALNKRYGKLKANPIKPEEHGALEKLPDIVF 495 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 IDGGKGQLA+A+ F++L ++ LL+GVAKG RK GLETL + SLP S Sbjct: 496 IDGGKGQLAKAEEFFSQLALTRTP---LLVGVAKGESRKPGLETLILAGSHQLISLPATS 552 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 PALH++QHIRDESH AI GHR KR KV S LE+IEG+G K+RQ LL ++GGLQ + Sbjct: 553 PALHLVQHIRDESHRFAITGHRAKRQKVSKKSRLESIEGIGAKKRQSLLTFLGGLQEVMQ 612 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLK 609 A + +AKVPGIS LAEKI +L Sbjct: 613 ADITALAKVPGISHVLAEKIHNALH 637 >UniRef50_B8I8F2 UvrABC system protein C n=2 Tax=Clostridium RepID=UVRC_CLOCE Length = 613 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 207/624 (33%), Positives = 351/624 (56%), Gaps = 33/624 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQI 63 FD + LK + + GVY M DA G VIYVGKA LK R+ YF+ + K +A+V+++ Sbjct: 2 FDIQEELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYFQQSANHPPKVQAMVSKV 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + + V +E EAL+LE IK Y+P+YN+LL+DDK YP+I ++ + +PR+ R + Sbjct: 62 SEFEYIVVDSEVEALMLECTLIKKYKPKYNILLKDDKHYPYIKVTLNEEYPRILKTRRVE 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVE 180 YFGP+ +G+AV +T+ L+K+F ++ C ++ R ++RPCL Y + +CL PC + Sbjct: 122 KDGARYFGPYSSGFAVNDTIDTLKKLFSLKTCNKNLPRDIGKTRPCLNYHMKQCLAPC-Q 180 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G V+ +EY + ++ + FL G+ D+++ L +META++ L+FE+AA++R++I ++++++ Sbjct: 181 GGVNRDEYREMMKKICRFLGGQYDEIINDLRIQMETAAEQLDFEKAAQLRNKITSIKQLS 240 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E Q V T +D D+IG + D+ C+ V F+R G+V+G + + + + TF Sbjct: 241 ESQKVLFTDLEDRDIIGYSADSTDLCIQVFFVRNGRVIGREHFIFEGEANEDKGYSLSTF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY ++++ +P EI+L + D +A L+E G K+ ++ RGD + + + Sbjct: 301 IKQFY---TKVQYVPSEIVLQSEVDDSETIAKWLTEKRGFKVALRVPQRGDLVKLVHMVS 357 Query: 360 TNAATALTSKLSQQSTV----HQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVV 414 NA L +QS + + L +L L E R+E +DIS+T + VAS VV Sbjct: 358 ENAEITLKLHRERQSREGTVHSEGMAQLVKLLGLEEAPARIESYDISNTGSSEIVASMVV 417 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKIPDVIL 464 F+ P R EYR++ + I +DY +M + L RR +A + SK+PD+IL Sbjct: 418 FENGRPARQEYRKFKMKSIEQQNDYGSMQETLFRRLNRAKREKEEGTENAKFSKLPDLIL 477 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGG + A+ V EL ++ + G+AK + G + L + Sbjct: 478 VDGGSNHVNAARQVVEELGYNFK-----IAGMAKDDRHRTKS----LVYMGNEYELATNM 528 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 P L I I+DE+H A+ +RK R K S L+ IEG+G R++ L+K+ + +R Sbjct: 529 PLLRFITEIQDETHRVAVEYNRKLREKRYVRSELDEIEGIGQTRKKALIKHFKSVAAIRK 588 Query: 585 ASVEEIAKVPGISQGLAEKIFWSL 608 A + ++ +V GIS+ +A+ I+ Sbjct: 589 ADIAQLQEVNGISEKIAKNIYEYF 612 >UniRef50_Q12W02 UvrABC system protein C n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=UVRC_METBU Length = 604 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 216/612 (35%), Positives = 324/612 (52%), Gaps = 26/612 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQ 65 + + + PGVY M D +IY+GKAK LKKR+S YF+S+ S KT A+V +I Sbjct: 1 MRPDISNIPELPGVYLMKDISDNIIYIGKAKSLKKRVSQYFQSSKNHSSKTRAMVRKIAD 60 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 +D VT +E AL+LE N +K +P YN+ L+DDK YP++ ++ P++ + R Sbjct: 61 VDYIVTESEVAALILEANLVKKNRPHYNIDLKDDKRYPYVKVTVNTKFPKIFITRRRLMD 120 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 YFGP+ N VR+TL ++ +IF I++C V R CL Y I RC PC G ++ Sbjct: 121 GALYFGPYTNVKPVRQTLDMISQIFRIKRCNRRVDGKGKRACLNYHIDRCYAPC-NGSIT 179 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 EEY V G+ + +L +M + E+E AA IRDQI A++ ++ +Q Sbjct: 180 PEEYRNNVMEAVKLFKGETSGTIKELQEKMNIHAIAQEYESAAVIRDQIDALKSLSRQQT 239 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT-ELSEVVETFVGQF 303 + DD D+I A D V + +IR G ++G T ++ V E F+ Q+ Sbjct: 240 ATAGNDDSDIIATASDDETVFVQIFYIRDGNMVGKADMSLSWGDATGNIARVTEEFIKQY 299 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y +P EIL+ + + +K L+ LSE A R + +Q RG++ R +++A NA Sbjct: 300 YQDA----PVPPEILVQYPIPEKELVIKWLSEKAARSVQIQVPQRGNKKRLMEMAEQNAQ 355 Query: 364 TALTSKLSQQSTVHQRLT---ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 L +QS Q L L L L + +E FDIS+ G V S VVF+ Sbjct: 356 MTLEQSHLKQSDKEQALQALLQLRDALALSTLPAHIEGFDISNISGTDAVGSMVVFENGL 415 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNV 478 P ++YR +NI + DD+A M +V++RRY + K+PD+ILIDGG GQ++ A Sbjct: 416 PANSKYRHFNIKTVKGIDDFAMMAEVVKRRYTHQKAEKDKLPDLILIDGGPGQVSAAMGS 475 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG--EGFSLPPDSPALHVIQHIRDE 536 EL + L+G+AK E + +G E LP S AL V+ +RDE Sbjct: 476 LKELQL-----DIPLVGLAK------RFEHIIVPKDGTDEVVILPHTSEALKVLMRVRDE 524 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 SH A+ HR++R + S L+TI G+G R++ LL + ++ +R+ASVEE+ V GI Sbjct: 525 SHRFAVSSHRRRRTARLSHSELDTIPGIGASRKKALLNHFSSIEQIRHASVEELTAVEGI 584 Query: 597 SQGLAEKIFWSL 608 S+GLAE+I Sbjct: 585 SKGLAERIVAHF 596 >UniRef50_Q2NGT2 UvrABC system protein C n=4 Tax=Methanobacteriaceae RepID=UVRC_METST Length = 598 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 220/612 (35%), Positives = 324/612 (52%), Gaps = 37/612 (6%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVAQIQQIDVT 69 V +PGVY M++ VIYVGKAK LK RL SYFR KT+ L+ + Sbjct: 7 DEVPQKPGVYIMHNKEDEVIYVGKAKKLKSRLQSYFRDEDKLDRPKTQFLMRHFSYFEYI 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 +T+TE EAL+LE N IK Y+P YN+ L+D K YP+I ++ + PR+ + R + K Y+ Sbjct: 67 LTNTEKEALILEANLIKKYRPHYNISLKDGKQYPYIKITNEDFPRIYITRNIVNDKASYY 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+ + R + L K F IR C++ PCL YQI +C PCV +S+EEY Sbjct: 127 GPYTDSTHARAFIDFLNKNFQIRTCKHM-----DGPCLNYQIKQCSAPCV-NYISQEEYN 180 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + + V+L L GK + +L M ++N+EFE+AA +RDQI ++ EKQ + Sbjct: 181 RNIRRVKLLLQGKYKTTIKKLKKDMNRYAKNMEFEKAAMLRDQIDTIKITLEKQNIQPNQ 240 Query: 250 D-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D + D+IG + A V +L +R GK K G ++ F+ Q+Y Sbjct: 241 DVNQDIIGFDHNNEEAAVVILSVRSGKTNKKDDLVLKGIKGFSDKQIRTEFIKQYYS--- 297 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 LP EI+L+ ++ DK ++ + L E A KI + G +K+A+ NA +LT Sbjct: 298 -TAPLPDEIILEDDIEDKDVIVEWLEEKANHKIKITVATDGHYITLIKIAKKNAHISLTE 356 Query: 369 KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 ++ L L L LP + +E FDIS+ G VAS VVF+ P + YR+ Sbjct: 357 NTKEEEN---PLLTLEKYLNLPRLPYHIEAFDISNISGIYAVASMVVFENGKPAKKMYRK 413 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKI---------PDVILIDGGKGQLAQAKNV 478 + + +D+A M +V+ RRY ++ PD++LIDGGKGQL A +V Sbjct: 414 FKMNT-PGPNDFAMMKEVITRRYSHISPNNTNNTSDSLSIHPDLVLIDGGKGQLGMAVDV 472 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 F +L+++ L G+AK E ++ + LP S ALH++Q++RDESH Sbjct: 473 FKKLNIT----DVPLAGLAKK------FEEVYLPGQTNPIILPRQSSALHLLQYVRDESH 522 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HRK R+K S L+ I GVG KR+Q LL + L + NAS +EI +V GI+Q Sbjct: 523 RFAITFHRKLRSKAFTKSILDDIPGVGKKRKQALLTHFESLDNIYNASFDEICQVKGINQ 582 Query: 599 GLAEKIFWSLKH 610 LA+ I+ +LK Sbjct: 583 KLAKTIYETLKE 594 >UniRef50_B0S0L4 UvrABC system protein C n=2 Tax=Finegoldia magna RepID=UVRC_FINM2 Length = 608 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 213/620 (34%), Positives = 340/620 (54%), Gaps = 27/620 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD K L+ V +PGVY M+D +IYVGKA DL++R+ YF S+ K A+V+ ++ Sbjct: 2 FDIKKELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVE 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 + + + E EAL+LE N IK P+YN++LRDDK YP+I ++ + PR+ R Sbjct: 62 YFEYIIVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITNEKFPRVLKTRRVLKD 121 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGL 182 K +YFGPFPN YAV + + L+ + + IR C + + + RPCL Y I RC G CV Sbjct: 122 KAKYFGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVY-D 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V+EE+Y +++ V FL+G++D++ +L +M AS+NL FE AA++RD I ++ + EK Sbjct: 181 VNEEDYNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSITNIQVILEK 240 Query: 243 QFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q ++NT DLD+I +A +A CV V F+R GK++ + + +V F Sbjct: 241 QNITNTKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFK 300 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 QFY+ + +P +IL D + D+ L+ + L+E G K+ ++ RG++ L++ R N Sbjct: 301 QFYID---LTYVPKQILTDIEIEDRDLIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVN 357 Query: 362 AATALT----SKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 A L L ++ + L + + + R+EC+DIS+T G +V S +VF Sbjct: 358 AKEGLDKYISRHLKRERNRENAILDLQDITGVKPIDRIECYDISNTSGVDSVGSMIVFKN 417 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-------IPDVILIDGGKG 470 +YR++ I + DDYA+ +VL RR+ + +D K +P +IL+DGGKG Sbjct: 418 GAKSSKDYRKFKIKTVEGADDYASHREVLTRRFRRLLDSDKKDNSFDEMPSIILMDGGKG 477 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 Q+ AK V E ++ +LG+ K + E E L ++P ++ Sbjct: 478 QVNIAKEVLNEFNL-----DIPILGLVKDDKHRTRG----IIYENEEIRLKVNTPLYRLL 528 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 I++E+H AI HRK K S L+ I +G KR++ L+K+ L ++ ASVEE+ Sbjct: 529 FAIQEETHRFAINYHRKLHEKNFKKSELDNIALIGEKRKKALMKHFKTLDRIKKASVEEL 588 Query: 591 AKVPGISQGLAEKIFWSLKH 610 +V G+++ AE I K Sbjct: 589 CEVDGMNEKAAENIVNYFKQ 608 >UniRef50_C0ZZE8 UvrABC system protein C n=14 Tax=Actinomycetales RepID=UVRC_RHOE4 Length = 730 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 226/676 (33%), Positives = 348/676 (51%), Gaps = 79/676 (11%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D + T+ + PGVY+ D G VIYVGKAK L+ RL+SYF +T + Sbjct: 1 MPDPSTYRPATGTIPAAPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVTTLHPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+N+IK + PR+NV RDDK+YP + ++ + PRL ++ Sbjct: 61 VTTAGSVEWTVVSTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLFVY 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL LL ++FP R C + V++ RPCL I +C Sbjct: 121 RGPRRKGVRYFGPYSHAWAIRETLDLLLRVFPARTCSSGVFKRHNQIGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS EE+ Q VE FL+G+ D+++ L RM+ AS++L+FE AAR+RD I A Sbjct: 181 APCV-GRVSAEEHRQIVEDFCDFLAGRTDKLVKDLEKRMQQASEDLDFETAARLRDDIGA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT---- 290 +R+ EKQ V G D D++ A D A V V +R G+V G R + + G Sbjct: 240 LRKALEKQAVVLGDGTDADLVAFATDDLEAAVQVFHVRGGRVRGQRGWVVEKAGDAIDWA 299 Query: 291 ------ELSEVVETFVGQFYLQGSQMRT----------LPGEILLDFNLSDKTLLADSLS 334 +L +VE F+ QFY + + + +P E+L+ ++ T + LS Sbjct: 300 ALDAESDLPILVEQFLTQFYGEQAALDPGAGSEAGISAVPKEVLVPVLPANATEIQAWLS 359 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLP 390 +L G ++ ++ RGD+ + + NA AL ++ ++ L + L L Sbjct: 360 KLRGSQVQLRVPQRGDKKDLAETVQRNAKEALAQHKLKRAGDFTSRSAALQGIQEALDLD 419 Query: 391 EVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---GDDYAAMNQVL 446 R+EC DISH G VAS VVF+ P +++YR Y I DD A++ ++ Sbjct: 420 SAPLRIECIDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGHSDDVASIAEIT 479 Query: 447 RRRYGKAIDD----------------------------------SKIPDVILIDGGKGQL 472 RRR+ + D + P++ ++DGG Q+ Sbjct: 480 RRRFIRHNRDLGILAASASTMDADGGDLAPEAAIDPATGRPRRFAYPPNLFVVDGGAPQV 539 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A V EL V+ ++G+AK LE ++ E + LP S +L+++Q Sbjct: 540 TAAAAVLDELGVT----DVAVVGLAK------RLEEVWVPGEEDPVILPRTSESLYLLQR 589 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H AI HR KR++ S+L++++G+G RR L+ + G + L+ A+VEEI + Sbjct: 590 IRDEAHRFAITFHRSKRSRRMTASALDSVKGLGETRRTALVAHFGSVAKLKTATVEEIMQ 649 Query: 593 VPGISQGLAEKIFWSL 608 VPGI + A + +L Sbjct: 650 VPGIGETTATAVLAAL 665 >UniRef50_C6NXT8 Excinuclease ABC subunit C n=2 Tax=Gammaproteobacteria RepID=C6NXT8_9GAMM Length = 624 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 278/612 (45%), Positives = 392/612 (64%), Gaps = 13/612 (2%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + FD K FL+++ SQPGVY+M A G ++YVGKA++LK+R+SSYF+ S KT A++A Sbjct: 16 DEPFDLKLFLRSLGSQPGVYQMLAADGHILYVGKARNLKRRVSSYFQKTRHSPKTLAMLA 75 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRG 120 Q+ +++V VTHTETEAL+LE IK ++P YN+LLRDDKSYP++++ + PR+++HRG Sbjct: 76 QVARVEVLVTHTETEALVLEAQLIKKHRPHYNILLRDDKSYPYLYIDTSSAFPRMSLHRG 135 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + KG YFGP+P A+RE++ LLQK F +R CE+SV+ NRSR CL YQI RC GPCV Sbjct: 136 TQRGKGHYFGPYPAVSALRESMVLLQKAFRLRTCEDSVFHNRSRACLHYQIRRCSGPCV- 194 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G + E+ Y + ++ FL GK D+ + L RM A++ L+FEEAAR RDQI A+ ++ Sbjct: 195 GHIDEKSYHRDLQDALRFLQGKSDEAIRTLQQRMLAAAERLDFEEAARRRDQIAALSKIQ 254 Query: 241 EKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q+V+ G D DV+ G V V FIR G+ LG R+ FP+ P SEV+ F Sbjct: 255 ERQYVAQAGGGDFDVLAAVEADGQWVVFVTFIRHGRQLGGRAIFPQHPDTARGSEVMAAF 314 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+Y R +PG +L++ LA +L + AGRK+ ++ RG R R+L +A Sbjct: 315 LMQYYAD----REIPGNVLVNVLPRAAASLASALGQNAGRKVLLEQPQRGPRRRWLAMAV 370 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 NA AL + + +R+ L + L + R+ECFDISHT GE ASCVVF + Sbjct: 371 ANANEALRQRAQRADGGRRRMRLLQELFSLDRLPERVECFDISHTRGEAATASCVVFGED 430 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKN 477 G L+AEYRR+N+ ITPGDDYAAM Q + RRYG+ + + +PD++ IDGG Q+A+A+ Sbjct: 431 GALKAEYRRFNLRDITPGDDYAAMEQAVSRRYGRLLQEGLSLPDIVFIDGGPAQVARAQA 490 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 +L + LL GVAKG R+ GLE L + L PAL VIQ IRDE+ Sbjct: 491 ALDDLGI----REILLCGVAKGTSRRPGLEWLHTTLWTQPRQLSSGDPALLVIQEIRDEA 546 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H AI GHR +R+K + S L++I G+GPKRR LL+ GGL+G+R+A VE++ +V GI Sbjct: 547 HRFAITGHRARRSKARQESELDSIGGIGPKRRVALLRAFGGLRGIRDAGVEDLQRVEGIH 606 Query: 598 QGLAEKIFWSLK 609 LA++I+ Sbjct: 607 AELAQRIYAHFH 618 >UniRef50_Q3ZYA3 UvrABC system protein C n=5 Tax=Dehalococcoides RepID=UVRC_DEHSC Length = 607 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 220/622 (35%), Positives = 343/622 (55%), Gaps = 29/622 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M ++ + + ++ PGVY M +A G +IYVGKA LK R+ SYF + KT L Sbjct: 1 MPNE-TLQNQIASLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLTPKTCQL 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V+QI +++ +T +E EAL+LE N IK ++P +NV L+DDK +P++ ++ + PR+ + Sbjct: 60 VSQINELEYLITGSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYIT 119 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R G YFGPF N +VR TL +L+++F R C + SRPCL+Y I +CL PC Sbjct: 120 RSMADDGGRYFGPFANTRSVRHTLQVLKELFRFRSCNRTEPEKHSRPCLEYDIHQCLSPC 179 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G +S+ +Y + LFL GK DQVL LI M AS L++E AA RDQI +++ Sbjct: 180 T-GKISKSDYDHLISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKE 238 Query: 239 VTE-KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 V E +Q + + D I A + ++ V V FIR+GK++G S+ + + +++ Sbjct: 239 VIEGQQLAARVTGEQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILS 298 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 F QFY +Q +P +I+ + +SD+ +L LS+ G K+++ RG + + Sbjct: 299 EFAKQFYHSSTQ---IPPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPKELINI 355 Query: 358 ARTNAATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASC 412 NA L LS T+ L L + L L R+E +DIS+ G V S Sbjct: 356 VAENAREQLKQARIKNLSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSM 415 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS------KIPDVILID 466 VVF+ P +A YRR+ I + DD++ + +V+ RR+G+ + ++P ++LID Sbjct: 416 VVFENGKPQKAHYRRFRIKTVKGADDFSMLKEVISRRFGRVHREDAGESFARLPSLMLID 475 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ K +L + ++G+AK E ++ + E L +SPA Sbjct: 476 GGKGQLSSVKETLDKLGLEGQ----AVIGLAKE------FEEIYLPHKSEPIRLAANSPA 525 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L ++Q +RDE+H A+G H R K TS+L+ I GVGP RR++L+K G + G+R AS Sbjct: 526 LQLLQRVRDEAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQAS 585 Query: 587 VEEIAKVPGISQGLAEKIFWSL 608 E++++V GI+Q LA I L Sbjct: 586 FEKLSQVKGINQALALSIKELL 607 >UniRef50_UPI000050F72E excinuclease ABC subunit C n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F72E Length = 619 Score = 636 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 212/631 (33%), Positives = 329/631 (52%), Gaps = 33/631 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M+D + ++ + GVY+ D VIYVGKAK+L+ RL+SYF +T + Sbjct: 1 MADPASYRPATGSIPTSAGVYKFRDPDRRVIYVGKAKNLRNRLNSYFSNPAQLHPRTSTM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE +I + PR+NV+ RDDKSYP++ ++ D PR + Sbjct: 61 VHTAASVEWTVVDTEVEALQLEWTWINEFNPRFNVMFRDDKSYPYLAITMNDEVPRAFIT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + +YFGPF +A+++TL LL + FP+R C VYR RPCL I +C Sbjct: 121 RGKRRKGVKYFGPFAQVWAIKDTLDLLLRAFPMRTCTAGVYRRAERSGRPCLLGYIDKCA 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +S E + + F+SG + ++ M +A++ L++E AAR+RD+I A Sbjct: 181 APCV-GQISVEGHKDLARSISDFMSGNTGRFISYRQKEMASAAEELDYERAARLRDEITA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +++V +K V + D DV + + A V V +RQG++ G R + + +E Sbjct: 240 LQKVLDKSAVVLSVNADCDVFALVTEELEASVQVFHVRQGRIRGQRGWIIERSDDHSPAE 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 + ++ Q Y G +P EIL+D +D L LSE G ++ V+ RG++ Sbjct: 300 LTTDYLRQAYT-GLDADAIPREILVDTVPADIESLESWLSEQRGSRVTVRVPERGEKKAV 358 Query: 355 LKLARTNAATALTSKLSQQST----VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 L+ NA AL ++S+ L + L LPE R+EC DISHT G V Sbjct: 359 LETVAKNAKEALLQHKLKRSSDLTTRSTALKEIQEYLSLPEAPLRIECIDISHTQGSNVV 418 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKI 459 AS VVF+ + +YR + I G DD A+M V+ RR+ + ++ Sbjct: 419 ASLVVFEDGLVKKRDYRHFAIHGEAATDDTASMYDVVSRRFSRYLEQMSSDEPDERFGYR 478 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 P ++++DG Q+A A +L + ++G+AK LE ++ + Sbjct: 479 PSLLVVDGAGPQVAAATRALHDLGI----VDISVVGLAK------RLEEVWVPEDPFPVI 528 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 LP +S L ++Q +RDE+H AI HR KRAK +S L+ I G+G +R LL++ G + Sbjct: 529 LPRNSEGLFLMQRLRDEAHRFAISYHRSKRAKAMTSSVLDDISGLGESKRTALLRHFGSV 588 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + +R AS+EE+ +V GI Q LAEK+ +L Sbjct: 589 KKVRAASIEELCEVKGIGQALAEKVAAALAE 619 >UniRef50_A0QWV6 UvrABC system protein C n=27 Tax=Actinomycetales RepID=UVRC_MYCS2 Length = 706 Score = 636 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 222/659 (33%), Positives = 343/659 (52%), Gaps = 62/659 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D + ++ +PGVYR D G VIYVGKAK L+ RL+SYF + +T + Sbjct: 1 MPDPATYRPAPGSIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADITSLAPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+N+IK + PR+NV RDDKSYP + ++ + +PRL ++ Sbjct: 61 VMTAGSVEWTVVTTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLMVY 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS---RPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL LL ++FP R C V++ RPCL I +C Sbjct: 121 RGPRRKGVRYFGPYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS E++ Q V FL GK D++ + +M A++ L+FE AAR+RD I A Sbjct: 181 APCV-GRVSAEQHRQIVLDFCDFLGGKTDRLAKDMEQQMTAAAEQLDFERAARLRDDISA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG----- 289 ++R EKQ V G D DV+ A D A V V +R G+V G R + + Sbjct: 240 LKRALEKQAVVFGDGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSSEPAATG 299 Query: 290 ------TELSEVVETFVGQFYLQGSQ------------MRTLPGEILLDFNLSDKTLLAD 331 + ++VE F+ QFY + ++ +P ++L+ + LA Sbjct: 300 DADLGQSGQEQLVEQFLTQFYGEQAELGSASDTGGDEATNPVPRQVLVPVLPPNADELAT 359 Query: 332 SLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVL 387 LS L G +++++ RGD+ + + NA AL ++ + + L ++ L Sbjct: 360 WLSGLRGSRVSLRVPVRGDKRALAETVQRNAQEALAQHKLKRAGDFNARSEALQSIQEAL 419 Query: 388 KLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---GDDYAAMN 443 L + R+EC DISH G VAS VVF+ P +++YR Y I DD A++ Sbjct: 420 GLADAPLRIECVDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIA 479 Query: 444 QVLRRRYGKAIDDSKI--------------PDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 +V RRR+ + DS+ P++ ++DGG Q+ A V +L V + Sbjct: 480 EVTRRRFLRHTSDSQPDPSAEQRPRRFAYPPNLFVVDGGAPQVNAAAAVLEDLGV----D 535 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 ++G+AK LE ++ E + LP +S L+++Q +RDE+H AI HR KR Sbjct: 536 DVAVIGLAK------RLEEVWVPSEPDPVILPRNSEGLYLLQRVRDEAHRFAISYHRSKR 589 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 +K S+L+++ G+G RR+ L+ + G + L+ A+V+EI VPGI A + +L Sbjct: 590 SKRMTASALDSVRGLGEHRRKALVAHFGSVARLKEATVDEITAVPGIGVATARAVQEAL 648 >UniRef50_B2FK26 UvrABC system protein C n=29 Tax=Proteobacteria RepID=UVRC_STRMK Length = 614 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 306/615 (49%), Positives = 411/615 (66%), Gaps = 16/615 (2%) Query: 1 MSD----QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKT 56 M+D FD KAF +++ PGVYRMY A T++YVGKA+ L+ R+ SYF + + + Sbjct: 1 MTDVPAPAFDGKAFAAQLSTAPGVYRMYAADDTLLYVGKARALRNRVGSYFNGSPKNARI 60 Query: 57 EALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLA 116 ++++QI ++DVTVT +E EALLLE+ IK PRYNV LRDDK+YP + L+ + PR+A Sbjct: 61 MSMISQIVRMDVTVTRSEAEALLLENQLIKSLSPRYNVSLRDDKTYPHVLLTREDWPRIA 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 +HRG + G YFGP+P AVRETL L+ K+F +R CE+SV+RNRSRPCLQYQIGRC Sbjct: 121 LHRGPRAIPGRYFGPYPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSA 180 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PCVE LV+ EYA+ V LFL GK D++ +L +M+ AS+ LEFE+AAR+RD I ++ Sbjct: 181 PCVE-LVAPAEYAESVRRAALFLEGKSDELTRELGEQMQAASEALEFEQAARLRDLISSL 239 Query: 237 RRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 R + +Q+V DLDV+ VA ACV +L R G+ LG+R +FP+ G EV+ Sbjct: 240 RSMQTRQYVDGRAADLDVLAVAMQGSQACVLLLAFRDGRNLGTRPFFPRTNGEESPEEVL 299 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 FV Q+Y++ P EILLD + D LL +LS A RK+ ++ RG+RA Y++ Sbjct: 300 AAFVSQYYIEFE----PPREILLDREIPDADLLVAALSASAERKVQLKWNVRGERAGYVE 355 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVF 415 LA NA L ++L+ ++ H R AL +L L E KR+ECFDISHT+GE TVASCVVF Sbjct: 356 LASRNAQLTLATELNSRNAQHARSDALREMLGLAEPVKRVECFDISHTLGEATVASCVVF 415 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQ 474 DA GP+RA+YRR+NI+GI PGDDYAAM Q + RR+ +A+++ +PDV+LIDGG GQLAQ Sbjct: 416 DAAGPVRAQYRRFNISGIEPGDDYAAMRQAIDRRFRRAVEEQGVLPDVLLIDGGAGQLAQ 475 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 A+ A+L V LL+GVAKG +R+AG E L +G +PAL IQ +R Sbjct: 476 AQAALADLGVEG----VLLVGVAKGVERRAGHEALVMP-DGRELRPGAANPALQFIQQVR 530 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE+H AI GHR +R K + TS LE I G+GP+RR LLK+ GGL GL+ A EIAKV Sbjct: 531 DEAHRFAITGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIAKVE 590 Query: 595 GISQGLAEKIFWSLK 609 GI+ LA +I+ +L Sbjct: 591 GINDALAARIYANLH 605 >UniRef50_Q0BPX7 UvrABC system protein C n=43 Tax=Alphaproteobacteria RepID=UVRC_GRABC Length = 644 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 233/616 (37%), Positives = 362/616 (58%), Gaps = 23/616 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 +A LK + +PGVYRM D G +YVGKA+ LKKR++SY + + + +V++ + Sbjct: 33 IEAMLKLLPDRPGVYRMLDGQGEALYVGKARSLKKRVASYTQIHRLPERLRRMVSETVSM 92 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK-HA 124 ++ THTE EALLLE N IK +PR+N++LRDDKSYP++ L+ P++ HRGA+ Sbjct: 93 EIVTTHTEAEALLLEANLIKRLKPRFNIVLRDDKSYPWLMLTEDHAFPQIMKHRGAQTRK 152 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 Y+GPF + +AV +T+ +Q+IF +R C +SV+ NRSRPCL +QI RC PCV+ +S Sbjct: 153 AASYWGPFASAWAVNQTVTAMQRIFLLRSCSDSVFANRSRPCLLFQIRRCSAPCVD-RIS 211 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +E+YA+ V+ R FLSG+ ++ L +ME A++ LEFE AA IRD+I+ + V Sbjct: 212 QEDYAELVDQARAFLSGRGTEIQRDLARQMEQAAEALEFERAAAIRDRIRGLTHVQGTAV 271 Query: 245 VSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V+ + + DVI V DAG +CV V FIR G G+R+++P +V+ F+ QF Sbjct: 272 VNPASIGNADVIAVWQDAGQSCVQVFFIRGGHNNGNRAFYPAHTSAETAQDVLGAFIAQF 331 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y L LL+ ++++ L++++LS AGR++ + RG++ + A TNA Sbjct: 332 YDDKPPPPLL----LLNHTIAEQELVSEALSLKAGRRVELHVPVRGEKRAVVAHAETNAR 387 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 AL KL++ + ++ L +A + LP R+E +D SH MG VV G + Sbjct: 388 EALERKLAESAGQNRLLDGVAELFDLPTRPNRIEIYDNSHIMGTNPYGVMVVAGPEGWNK 447 Query: 423 AEYRRYNITG-ITPGDDYAAMNQVLRRRYGKAID--------DSKIPDVILIDGGKGQLA 473 + YR+++I G ITPGDD+A M ++L RR+ + + ++ PD++LIDGG GQL+ Sbjct: 448 SAYRKFSIRGPITPGDDFAMMREMLERRFSRGLKERAEGPEGEANWPDLVLIDGGAGQLS 507 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 + + E+ V+ L+ +AKG DR AG E E + F LPP P L+ +Q + Sbjct: 508 AVRGILDEIGVT----DVKLVAIAKGPDRDAGREWFHTEGQA-PFQLPPRDPVLYYLQRL 562 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H AI HR R+K S L+ I+G+G R++ LL + G +G++ A + + Sbjct: 563 RDEAHRFAITTHRAGRSKTLVRSELDDIDGIGAARKRALLNHFGSARGVKQAGLAALEAT 622 Query: 594 PGISQGLAEKIFWSLK 609 PGIS+ A +I+ Sbjct: 623 PGISKETARRIYAHFH 638 >UniRef50_Q2JCI3 UvrABC system protein C n=12 Tax=Actinomycetales RepID=UVRC_FRASC Length = 705 Score = 633 bits (1633), Expect = e-180, Method: Composition-based stats. Identities = 230/683 (33%), Positives = 342/683 (50%), Gaps = 82/683 (12%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF + +T+ + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFAELHTLHPRTQHM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V+ +D TV TE EAL LE+ +IK + PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VSSASSVDWTVVSTEVEALQLEYTWIKQFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSGGVFKRAAQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V + + VE F+SG+ + L +L M+ A+Q E+E AAR+RD I A Sbjct: 181 APCV-GRVDAATHREIVEDFCDFMSGQTGRYLRRLEREMQQAAQAQEYERAARLRDDIGA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DVI A D A V V ++R G+V G R + ++ Sbjct: 240 LRRAVEKQAVVLPDGTDADVIAFAEDELEAAVAVFYVRGGRVRGQRGWVVDKLDEVTTAD 299 Query: 295 VVETFVGQFYLQ-------------------GSQMRTLPGEILLDFNLSDKTLLADSLSE 335 +VE F+ Q YL GSQ +P EIL+ D + + L Sbjct: 300 LVEQFLTQEYLDGTGAASTGTAGSTVPTTTAGSQGEGIPREILVPALPPDVEAVTELLGA 359 Query: 336 LAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQST----VHQRLTALASVLKLPE 391 G ++ V+ RGD+ L+ NA A +++++ + L L L+LP+ Sbjct: 360 ARGSRVEVRVPRRGDKRTLLETVERNAKQAFALHRTKRASDLTARSRALAELQEALELPD 419 Query: 392 VK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---------GDDYAA 441 R+ECFD+S+T G VAS VVF+ P ++EYRR+ I GI GDD A+ Sbjct: 420 APLRIECFDVSNTQGTNVVASMVVFEDGLPRKSEYRRFAIRGIAGREGAGREGAGDDVAS 479 Query: 442 MNQVLRRRYGKAIDDSK------------------------------------IPDVILI 465 M + + RR+ + + + P+++++ Sbjct: 480 MYETIHRRFSRYLAERSRIADIADIAELGDIAGAPGAAQPIDPGTGRPRRFAYPPNLVVV 539 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGG Q+A A EL + L G+AK LE ++ + LP S Sbjct: 540 DGGAPQVAAAARALDELGIDAGPGGVALCGLAK------RLEEVWLPDTADPVILPRTSE 593 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 AL+++Q +RDE+H AI HR+KR+ S+L+ + G+G RR+ LL++ G + +R A Sbjct: 594 ALYLLQRVRDEAHRFAIAYHRQKRSTAMVASALDEVPGLGDTRRKALLRHFGSVAKIRAA 653 Query: 586 SVEEIAKVPGISQGLAEKIFWSL 608 S E+IA+V GI A I +L Sbjct: 654 SAEQIAQVSGIGPRTAAAIVTAL 676 >UniRef50_D1CFI6 Excinuclease ABC, C subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFI6_THET1 Length = 613 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 214/621 (34%), Positives = 332/621 (53%), Gaps = 30/621 (4%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 + + L+ + +PGVY M D G VIYVGKAK L+ R+ SYF S K +V QI Sbjct: 7 KEEIITRLQAIPEKPGVYLMKDKHGKVIYVGKAKVLRNRVRSYFSSKHLPEKIREMVPQI 66 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ID VT +E EAL LE IK + P+YN + +DDK P+I ++ + PR+ R Sbjct: 67 HDIDYIVTDSEHEALTLEVTLIKHHMPKYNSMFKDDKRLPYIKVTVQEEFPRVLKCRQII 126 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQC-ENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + +Y+GP+ + E + L+ + F + + +SRPCL Y + RCLG C G Sbjct: 127 NDGSKYYGPYTALGSAAEAIKLIHQHFMLCHKENEPIDGKQSRPCLPYYLHRCLGACA-G 185 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +EY E V LFL GK D++ +L +ME A++NLEFE+AA R+QI+A+ + + Sbjct: 186 RADPQEYRAATEQVILFLEGKHDELTEKLRRKMEEAAENLEFEKAALYRNQIKAIEDIRQ 245 Query: 242 KQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q V T +D+D+I +A D G A + LFIR G+++G ++ ++++ + Sbjct: 246 RQKVVLPTNEDMDIISIALDGGEAGIERLFIRDGRLVGHDHSVVELIEDQSPGQIIQIAL 305 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 QFY+ +PG I+L + + L+ +L E R+I ++ G++ + +A Sbjct: 306 EQFYIGTYN---IPGRIVLQYPPDEIELIQSALQEYHKREIILEVPTEGEKLELVNMAAQ 362 Query: 361 NAATALTSK----LSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVF 415 NA L K LS++ + L L+LP + R+EC+DIS+ G V S VVF Sbjct: 363 NAKEGLERKRFKWLSEEQKRTGAMLELQKELQLPIKPSRIECYDISNVQGADAVGSMVVF 422 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKA-------IDDSKIPDVILIDGG 468 + P R +YRR+ I G+ +D+ M +VL RR+ +A K+PD+I+IDGG Sbjct: 423 EDGAPARNQYRRFRIKGVEGPNDFEMMREVLTRRFKRATSNEYRETSWGKLPDLIIIDGG 482 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL A V + + + G+AK E LF + LP DS AL+ Sbjct: 483 KGQLGVAVEVLQSFGL----GNIPVFGLAKQQ------EELFKPGRSDSIMLPRDSEALY 532 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 ++Q IRDE+H A+G HR K S L+ + G+GPKR++ L++ G + +R AS++ Sbjct: 533 LLQRIRDEAHRFALGYHRSLHTKKSVGSILDQVPGIGPKRKKALIQAFGSVSKIREASID 592 Query: 589 EI-AKVPGISQGLAEKIFWSL 608 EI A V GI + ++ +L Sbjct: 593 EIMAAVKGIDRATVIRLKEAL 613 >UniRef50_C6E9G2 UvrABC system protein C n=3 Tax=Geobacter RepID=UVRC_GEOSM Length = 649 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 219/613 (35%), Positives = 334/613 (54%), Gaps = 22/613 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQI 66 +A ++ S PGVY M A TVIYVGKA++LKKR+ SY SR +V + + Sbjct: 4 QAMIENFPSSPGVYLMKSADDTVIYVGKARNLKKRVRSYAGDTRDSRIHIRFMVQLVHSV 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D VT TE EAL+LE+ IK ++P+YN+ LRDDK+Y + + + PRL++ R Sbjct: 64 DYLVTDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEQFPRLSIVRKIPSDG 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+ + A +E L L K+FP+R + R RPCL +QI +C PC GL+S Sbjct: 124 ARYFGPYASATAAKEVLKQLYKMFPLRHYPLATCMARKRPCLYHQIKQCSAPCC-GLISA 182 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EYA + LFL GK+++V S+M AS+ + +E+AAR RD ++A+ E+Q + Sbjct: 183 AEYAALAQGAALFLEGKNNEVARLYRSKMNLASEQMRYEDAARYRDLLRAIEVTVERQKM 242 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D DV GV +A + +L IR G + G RS+ TE E + +F+ ++Y Sbjct: 243 VAQSGDSDVFGVHREADRMQIALLHIRGGTLTGGRSFLFDWELETE--EGLASFLNEYYD 300 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P ++L+ +++ L + LSE AG+K+ + RG + +KLA NA TA Sbjct: 301 LDA---PIPPQVLIPLPIAEPAALEELLSEKAGKKVTIAVPQRGPKLEMVKLAGKNAETA 357 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAE 424 +L+++S+ LT LA L LP R +EC+DIS+ GE V S VVF ++ Sbjct: 358 AQERLARESSSATLLTELAEKLNLPHPPRRIECYDISNIQGEMAVGSRVVFIDGRADKSL 417 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YRRY I G+ DD+A M +VL RR+ + K PD+I++DGG GQL V EL+V Sbjct: 418 YRRYRIKGVLQSDDFAMMREVLSRRFKADSHEEK-PDLIVVDGGLGQLGVLNAVLDELEV 476 Query: 485 SWDKNHPLLLGVAKG--------ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 + G+AK + + E +F +L S L ++ IRDE Sbjct: 477 TG----VEAAGLAKSRVARDMESEEIERSDERVFRPGRKNAIALRQSSAPLLLLVRIRDE 532 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H A+ H+ R+KV S L+ + G+G KR++ LLK+ G L+ ++ A++EE+ PG+ Sbjct: 533 AHRFAVTYHKDVRSKVLTGSELDGVAGIGEKRKKALLKHFGSLKRVKEATLEELKGAPGM 592 Query: 597 SQGLAEKIFWSLK 609 ++ A + L Sbjct: 593 TESAARALVERLH 605 >UniRef50_C5BV40 UvrABC system protein C n=16 Tax=Actinomycetales RepID=UVRC_BEUC1 Length = 693 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 225/666 (33%), Positives = 344/666 (51%), Gaps = 69/666 (10%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + + PGVYR D G V+YVGKAK L+ RLSSYF+ + +T+ + Sbjct: 1 MADPTTYRPRPGEIPDAPGVYRFRDPHGRVVYVGKAKSLRSRLSSYFQDLSALHPRTQQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+++IK + PR+NV RDDKSYP++ ++ G+ PR+ + Sbjct: 61 VTTASSVEWTVVGTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTMGEEVPRVQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RGAK YFGP+ + +A+RET+ LL ++FP+R C + VY+ RPCL I +C Sbjct: 121 RGAKRKGTRYFGPYGHAWAIRETVDLLLRVFPVRTCSSGVYKRAAASGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +S E++ E F++G+ L +L S M AS L+FE AAR+RD I A Sbjct: 181 APCV-GRISVEDHRDLAEDFCSFMAGESGVFLRRLESEMAAASAELDFERAARVRDDINA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RRV EK V G D DV +A D V V +R G+V G R + + + Sbjct: 240 LRRVVEKNAVVLADGTDADVFALAADELEVSVQVFHVRGGRVRGQRGWVTERVEDLDDGA 299 Query: 295 VVETFVGQFYLQGSQMR-------TLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKP 347 +VE + Q Y + + +P E+L+ D LA+ LS L G +++++ Sbjct: 300 LVERLLQQVYGPYATEKGPDGGATGVPREVLVPALPDDAVELAEWLSTLRGSRVSLRIPQ 359 Query: 348 RGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEVK-RMECFDISH 402 RG++ + RTNA AL +++ ++ + L+ L L L E R+EC+DIS Sbjct: 360 RGEKRALAETVRTNAQQALALHKTRRAGDLTSRSRALSELQEELGLAESPLRIECYDIST 419 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGKAIDDSK- 458 G V S VVF+ ++EYR++ + G DD AM++V+ RR+ + + Sbjct: 420 LQGTHQVGSMVVFEDGLARKSEYRQFVVRGADGQGARDDTEAMHEVITRRFRRYLAQRDV 479 Query: 459 ------------------------------------IPDVILIDGGKGQLAQAKNVFAEL 482 P+++++DGG Q+A A+ EL Sbjct: 480 GVAGGGSGEVPAEDDDGVAIAGPVDPETGRPARFAYPPNLVVVDGGPPQVAAAQRALDEL 539 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 VS L+G+AK LE ++ E LP S L+++Q +RDE+H AI Sbjct: 540 GVS----DVALVGLAK------RLEEVWLPGEEYPLVLPRASEGLYLLQRVRDEAHRFAI 589 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRK+R K S+L+ + G+GP R+ LL+ G ++ +R A+ EEIA VPG + AE Sbjct: 590 THHRKRRGKSMTRSTLDDVPGLGPSRQAALLQAFGSVRRIRAATPEEIAAVPGFGRRTAE 649 Query: 603 KIFWSL 608 ++ +L Sbjct: 650 QVLAAL 655 >UniRef50_A0LHP7 Excinuclease ABC, C subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHP7_SYNFM Length = 677 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 230/618 (37%), Positives = 338/618 (54%), Gaps = 18/618 (2%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALV 60 D + + PGVY DA G V+YVGKA DL+KR++SYF+S KT AL+ Sbjct: 63 DDSPSLLSKTASFPHLPGVYLFKDASGAVLYVGKAIDLRKRIASYFKSTGPIPVKTRALM 122 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 + ++ VT E EALLLE + IK ++PRYNV+LRDDK+YP + + + PRL + R Sbjct: 123 GKAADMEYVVTSNEKEALLLEASLIKKHRPRYNVVLRDDKNYPALRIDPREPFPRLEVVR 182 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + YFGP+ + YA+RETL LL ++FP+R C+ R RPCL Y +GRCLG C Sbjct: 183 RFQRDGALYFGPYHSAYALRETLRLLHQLFPLRLCKGKRLLARERPCLNYSLGRCLGACA 242 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G VS E+Y + V+ V LFL GK D + QL RM A++ L FE AA RD++Q + + Sbjct: 243 -GRVSPEDYHKMVDEVVLFLQGKTDVLQQQLRRRMADAAEALNFELAAYYRDRLQGIASM 301 Query: 240 TEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 EKQ + + + DVIG+ A + +LF+R+G + G R + + G E E++ Sbjct: 302 LEKQHIVSDRFLNQDVIGLHVGEEGAELAILFVRKGTLTGQRDFDLRDAQG-EPMELLTA 360 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ QFY + R +P EI++ + + LL + L+EL G+++ V RGDR L++A Sbjct: 361 FIQQFYRED---RYIPDEIVVPAPVEAEALLEEWLTELKGKRVRVWAARRGDRRELLEIA 417 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 NA TS+ Q L L +LKLP RM C DIS+ G V + VVF Sbjct: 418 GKNARERYTSRRKWQKRDVTMLQNLQRILKLPRAPLRMACVDISNIQGRHAVGAVVVFSE 477 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P + YRRY I G T DD A M +V+ R ++ D++++DGGK QL + + Sbjct: 478 GSPDKDSYRRYRIHGKTEPDDPAMMAEVIERLLKNDAPLAESLDLLVLDGGKSQLNRIRR 537 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGL------ETLFFEPEGEGFSLPPDSPALHVIQ 531 + EL L+ +AK + G E ++ L LH++Q Sbjct: 538 LMEELG---AAEGLPLISIAKEKETDRGEKGRGLYEKIYLPGRKNPLFLHHYPDILHLLQ 594 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H AI ++ S+L+ + GVGPKR ++L+++ G ++ LR ASVE+IA Sbjct: 595 RLRDEAHRFAISHYKSLHRNDLLASALDAVPGVGPKRSRLLIRHFGSMKALREASVEDIA 654 Query: 592 KVPGISQGLAEKIFWSLK 609 +VPG+ +A IF L+ Sbjct: 655 QVPGVPPTVARTIFNILR 672 >UniRef50_Q3AFE5 UvrABC system protein C n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=UVRC_CARHZ Length = 607 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 226/622 (36%), Positives = 335/622 (53%), Gaps = 34/622 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQI 63 +K + PGVY D G VIYVGKAK+LK R+ SYF+ KT ++ + Sbjct: 1 MTLWEKVKNLPDSPGVYLYKDEKGEVIYVGKAKNLKNRVRSYFQPPEKLLPKTRVMMEKA 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 + I+V +T TE EAL+LE N IK Y+PRYN+LL+DDKSYP++ ++G+ PRL + R + Sbjct: 61 RDIEVIITSTEVEALILEQNLIKRYRPRYNILLKDDKSYPYLKITGEEFPRLLITRRVVN 120 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 G YFGP+P+ A+ ET LL+ IF R C +++ + RPCL + I +C PC G + Sbjct: 121 DGGRYFGPYPDAGALNETYKLLRSIFKFRTCTPTIFAQKKRPCLNFHIKKCSAPCA-GEI 179 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S EEY +++E V FL G+ + ++ +L M AS NLEFE AA++RDQI A+ ++ KQ Sbjct: 180 SREEYFKEIEMVVDFLEGRGENLIKKLKKEMAIASDNLEFERAAKLRDQILALEKILAKQ 239 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 +S + DV+ VA + + IRQG +LG + Y G E E++ + Sbjct: 240 KISRGQRNADVVVVANRENLGVGLIFVIRQGNLLGQKVYTFT--GEMETGELLNQVLVTH 297 Query: 304 YLQGSQMRTLPGEILLDFNLS-DKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 Y + + +P EI+L + D+ L G+K RG++ LK+A N Sbjct: 298 YGE---AKEVPVEIILSTRENLDEEFLNSWFELKFGKKPKFTVPKRGEKFELLKMALENV 354 Query: 363 ATALTSKLSQQSTVH----QRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 L K+ + L L L LP V R+E +DISH G TVAS VVF Sbjct: 355 NFTLDEKIKLNEKKQLLNEKALMDLKEALNLPVVPRRIEGYDISHLAGTGTVASMVVFID 414 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI---DDS-------KIPDVILIDG 467 P++ +YRR+ I DDY AM + + RR+ K + ++ ++PD++LIDG Sbjct: 415 GEPVKGKYRRFAIRS-AANDDYTAMFEAVLRRFKKYLALQEEGGADGSFEELPDLVLIDG 473 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL A + E ++ ++ +AK E +F + + L D L Sbjct: 474 GKGQLNAAMDALKETNLLGK---FTVIALAKEQ------EEIFLPGKKDSLLLTQDREGL 524 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 ++Q +RDE+H A G KK S LE +EG+GPKRR+ LL G ++ LR A+V Sbjct: 525 KLLQRVRDEAHRFARGYQEKK-RVKTLASLLEQVEGIGPKRRKQLLNKFGSIKNLREATV 583 Query: 588 EEIAKVPGISQGLAEKIFWSLK 609 EEI VPGI++ +AE++ L+ Sbjct: 584 EEITAVPGITREIAERLKELLE 605 >UniRef50_B5E2L2 UvrABC system protein C n=268 Tax=Bacilli RepID=UVRC_STRP4 Length = 615 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 219/609 (35%), Positives = 333/609 (54%), Gaps = 32/609 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K+ L+ + + PG Y D GT+IYVGKAK+L+ R+ SYFR + KTEALV++I Sbjct: 5 IKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGS-HDTKTEALVSEIVDF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT + EALLLE N IK +P+YN++L+DDKSYPFI ++ + +PRL + R K G Sbjct: 64 EFIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGG 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+P+ A E LL +IFP R+C N S+ C Y IG+C+ + E Sbjct: 124 LYFGPYPDVGAANEIKRLLDRIFPFRKCTNP----PSKVCFYYHIGQCMAHTICKK-DEA 178 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 + + V FL G+D++++ +L +M A+Q +EFE AA RD IQA+ + KQ V Sbjct: 179 YFKSMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVM 238 Query: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + DV G D G CV V F+RQGK++ P + E T+VGQFY Sbjct: 239 AKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLF--PYFNDPDEDFLTYVGQFYQ 296 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + S + +P E+L+ ++ ++ + A S + RG++ + + LA NA + Sbjct: 297 EKSHL--VPNEVLIPQDIDEEAVKALVDS-------KILKPQRGEKKQLVNLAIKNARVS 347 Query: 366 LTSKL----SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K + L +L++P R+E FD S+ MG V++ VVF P Sbjct: 348 LEQKFNLLEKSVEKTQGAIENLGRLLQIPTPVRIESFDNSNIMGTSPVSAMVVFVNGKPS 407 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVF- 479 + +YR+Y I + DDYA+M +V+RRRYG+ ++ PD+I+IDGG+GQ+ AK V Sbjct: 408 KKDYRKYKIKTVVGPDDYASMREVIRRRYGRVQREALTPPDLIVIDGGQGQVNIAKQVIQ 467 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL + + G+ K + L F E L +S ++Q I+DE H Sbjct: 468 EELGL-----DIPIAGLQKNDKHQTH--ELLFGDPLEVVDLSRNSQEFFLLQRIQDEVHR 520 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR+ R+K +S L+ I+G+GPKR+Q L+++ L ++ ASV+EI +V G+ + Sbjct: 521 FAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV-GVPRA 579 Query: 600 LAEKIFWSL 608 +AE + L Sbjct: 580 VAEAVQTKL 588 >UniRef50_Q4JVI8 UvrABC system protein C n=8 Tax=Corynebacterium RepID=UVRC_CORJK Length = 690 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 227/694 (32%), Positives = 342/694 (49%), Gaps = 104/694 (14%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQ 65 + ++ + PGVY DA VIYVGKAK+L+ RLS+YF+ + +T A+V Sbjct: 6 YRPEPGSIPTDPGVYTFRDAHERVIYVGKAKNLRARLSNYFQDLDQLHPRTRAMVQSANH 65 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 + TV +E EAL LE+ +IK + PR+NV+ RDDK+YP + +S + PR M+RG + Sbjct: 66 VQWTVVSSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFMYRGPRRK 125 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCLGPCVEG 181 YFGP+P +A+RETL L ++FPIR C VYR RPCL I RC PCV G Sbjct: 126 GVRYFGPYPKAWAIRETLESLTRVFPIRTCSAGVYRRHEALGRPCLLGYIDRCSAPCV-G 184 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 ++ E++ V+ FL+G + VL ++ ME AS+NL+FE AA +RDQ+QA+++ E Sbjct: 185 KITPEDHRALVDQFSSFLAGNTEPVLRRVRKEMEQASENLDFERAASLRDQLQAMQKSME 244 Query: 242 KQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q V + D D+I D A V + +R G++ G R + + ++V F+ Sbjct: 245 RQAVVFSDNTDADLIAFVADELEAAVQIFHVRGGRIHGQRGWVVER-EDLSEEKLVADFI 303 Query: 301 GQFYLQGSQM-----------------------------------------RTLPGEILL 319 QFY + +++ +P EIL+ Sbjct: 304 TQFYGETAELAKATETQVGGASGPEVDRDLARAINPAAAQDLGDLVGDVQVTPVPREILV 363 Query: 320 DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ----ST 375 D LA L+ L G + ++ RGD+ + A TNA AL ++ + Sbjct: 364 HAMPDDADDLAAWLTSLRGSNMQIRVPQRGDKKALMTTAETNATQALAQHKLKRAGDITA 423 Query: 376 VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGIT 434 L L L + E R+EC DISH G VAS VVF+ P +A+YRRY I Sbjct: 424 RSAALKELQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAA 483 Query: 435 P---GDDYAAMNQVLRRRYGKAIDDSK--------------------------------- 458 DD A++ +V+RRR+ + D Sbjct: 484 GDGHSDDVASIAEVVRRRFKRYQQDKSAVPAGDDAGDLLEGETELEDNSAEGTDPATEKR 543 Query: 459 ----IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE 514 P + ++DGG Q+ A+ V EL V+ L+G+AK LE ++ E Sbjct: 544 KFAYPPQLFIVDGGLPQVNAAQEVLDELGVN----DVTLVGIAK------RLEEIWVPGE 593 Query: 515 GEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLK 574 +P +SPAL+++Q++RDE+H AI HR++R+ S L+ I G+GPKRR+ L+K Sbjct: 594 EYPIIVPRNSPALYLVQNLRDEAHRFAITFHRQQRSARMRRSKLDDIPGLGPKRRKQLVK 653 Query: 575 YMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G + ++ ASVE+IA +PG LA+ I +L Sbjct: 654 EFGSVARVKEASVEDIAALPGFGPKLAQLIHDAL 687 >UniRef50_Q2LR71 UvrABC system protein C n=1 Tax=Syntrophus aciditrophicus SB RepID=UVRC_SYNAS Length = 618 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 218/619 (35%), Positives = 336/619 (54%), Gaps = 23/619 (3%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 ++ + + PGVY M DA G ++YVGKAK+LK R +YF + LV++ Sbjct: 2 NRQQLEGRIDIAPRTPGVYLMKDAAGKILYVGKAKNLKSRTRAYFSGTDSRAMIPFLVSR 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 I I+ +T TE EAL+LE+N IK + PRYN+ RDDK+Y I + PR + R Sbjct: 62 IHDIEFILTETEKEALILENNLIKEHHPRYNICFRDDKAYFNIRADLNEPFPRFQLVRRP 121 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + +YFGP+P+ + RETL LQ IFP+R C ++ ++R+RPCL+YQI RCL PCV G Sbjct: 122 RKDGAKYFGPYPSSASARETLQFLQSIFPLRTCRDAELKSRTRPCLEYQIKRCLAPCV-G 180 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 ++ E+Y Q V FL G+ + +L +L RM+ A++ + +EEAA +RD+I+A+ E Sbjct: 181 RINSEDYLQMVRDGVSFLEGRGNNLLRELRERMKMAAEQMNYEEAAFLRDRIRAIEETLE 240 Query: 242 KQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q VS T D D+ G+ + + V +L IRQGK+LGSR P + E ++++ + + Sbjct: 241 RQRMVSMTFKDQDIFGLYREGHLIQVCILLIRQGKILGSR-LLPLLKFEGETADMLSSLL 299 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y Q +P EIL+ ++ D+ ++ + L E G+ +++ +G L +A Sbjct: 300 MQYYDQSVD---IPQEILIPASIEDRQVIREWLEEKRGKGLSILIPRKGRGLELLHIAEQ 356 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANG 419 NA + + L L L L R +E FDIS+ G VA+ V F Sbjct: 357 NAEHGFKMERKSLDDSDESLRLLMERLHLRRFPRKIEAFDISNIGGRLAVAAMVTFQDGR 416 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 PL++ YRR+ I + DDYA M + L+RRY +PD+I++DGGKGQLA A ++ Sbjct: 417 PLKSGYRRFRIRTVHGADDYAMMYEALKRRY---QGKENLPDLIVVDGGKGQLAVAFSLL 473 Query: 480 AELDVSWDKNHPLLLGVAKGA--------DRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 +L +S ++G+AK + ++ + E L L ++Q Sbjct: 474 KDLSISGQD----VIGLAKERVNGVTVQGGVNKSEDRVYLPHKKEALYLSRWPAVLFLLQ 529 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H A+ HR + + S L+ I GVG R++ LL G L +R A+VEE+ Sbjct: 530 RIRDEAHRFAVSYHRSLKTRSDFMSLLDDIPGVGEVRKKALLLSFGDLARIREATVEELT 589 Query: 592 KVPGISQGLAEKIFWSLKH 610 +V GI + L EKI L + Sbjct: 590 QVEGIGKDLGEKIHAFLHN 608 >UniRef50_UPI00017881F9 excinuclease ABC, C subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017881F9 Length = 667 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 217/666 (32%), Positives = 339/666 (50%), Gaps = 75/666 (11%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 Q + + L + QPG Y M + GT+IYVGKAK LK R+ SYF + + KT+ LV++I Sbjct: 15 QENIRHKLALLPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEI 73 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 + + VT + EAL+LE N IK +QPR+NVLL+DDK+YP++ ++ + HPRL + R Sbjct: 74 RDFEYIVTGSNMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEEHPRLEVTRRVLK 133 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K +YFGP+PN YA ++T LL +++P+R+C CL Y +G+CL PCV+ V Sbjct: 134 DKAKYFGPYPNAYAAQQTKKLLDRMYPLRKCGVM----PKEVCLYYHMGQCLAPCVK-EV 188 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + Y Q + FLSG +++ +L +M+ A+++L FE A +RDQI + + EKQ Sbjct: 189 PKSAYEQITGEITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQ 248 Query: 244 FVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 ++ T D DV G A D G CV +L++RQGK++ P + +F+ Q Sbjct: 249 KITTTDTRDRDVFGYAVDKGWMCVQILYMRQGKMVQRNKSVF--PFYGDAHSDFMSFIAQ 306 Query: 303 FYLQGSQMRT---LPGEILLDF-------------------NLSDKTLLADSLSELAGRK 340 +Y + LPG +L + ++ + + Sbjct: 307 YYSDNPALPQEILLPGPLLAEEAGSETATGSAGEQGARNAGEAAETEKKLTTDISEEQHE 366 Query: 341 I------------------------------NVQTKPRGDRARYLKLARTNAATALTSKL 370 + V RG + + + +A NA +L K Sbjct: 367 VLVQAQAEQAEAAGLVDAAGGAAALQEWLGVKVHVPQRGLKKQMVGMASDNAKVSLDEKF 426 Query: 371 SQQSTVHQRLT----ALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 +R + L V+ L + R+E FD S+ G V++ VVF P + EYR Sbjct: 427 RLIERDEERTSVAAANLGEVIGLQSLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKKEYR 486 Query: 427 RYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA-ELDV 484 +Y I + DDY M +V+RRRY + + ++ +PD+I++DGGKGQ++ A +V EL + Sbjct: 487 KYKIRTVQGPDDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGL 546 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 + G+ K A K L E SLP DS +++Q I+DE H AI Sbjct: 547 F-----VPVCGLVKDAKHKT--AQLMVGDPPEPVSLPRDSQEFYLLQRIQDEVHRFAISF 599 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 HR++R K TS L++I G+G KRR+MLLK+ G ++ ++ ASVE+ + I + LA I Sbjct: 600 HREQRGKSMVTSKLDSIPGIGEKRRKMLLKHFGSVKKIKEASVEDFKPLS-IGEKLATDI 658 Query: 605 FWSLKH 610 +L+ Sbjct: 659 LNALRE 664 >UniRef50_C9R9D0 Excinuclease ABC, C subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9R9D0_AMMDK Length = 622 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 234/629 (37%), Positives = 347/629 (55%), Gaps = 39/629 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M ++ KA ++ ++PGVY D G VIYVGKA L++R+ SYF+ N S K EA++ Sbjct: 1 MREELLLKAQ--SLPAEPGVYLFKDERGEVIYVGKAASLRQRVKSYFQGNP-SPKVEAIL 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 ++ ++ VT E EAL+LE N IKL++PRYNV+L+DDKSYP+I ++ + +PR+ R Sbjct: 58 RRVANLEFMVTDNEVEALILEANLIKLHRPRYNVVLKDDKSYPYIKVTVEEEYPRVLFAR 117 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + YFGP+ AV ETL L+ +FP R C V R SRPCL Y I RC GPC Sbjct: 118 RRDDKRARYFGPYTKAGAVYETLRFLRTLFPYRSCSGPVPRPNSRPCLNYHIKRCPGPCT 177 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G V E Y + ++ + LFL G+ QVL QL M+ A++ L FE AA RD++QA++ + Sbjct: 178 -GQVDPEVYRRNIDSLCLFLEGRYRQVLRQLEREMKQAAEELAFERAAVYRDRLQALKLI 236 Query: 240 TEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 E+Q V ++ +DLDV+G+A A VL +R+G+++G S+ + E ++ Sbjct: 237 LERQRVVSSRPEDLDVVGLARQEDRAQAVVLLVREGRLIGQESFPLTIAPEEE-QGLLTE 295 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ Q+Y + + P E++L + L D L AG ++ + RG + L+LA Sbjct: 296 FLKQYYGVIAS--SFPSELVLPSPPLE-EALVDLLRSRAGFEVKIVVPRRGHKKELLELA 352 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 NA AL L + + L++LA L LP V R+E +D SH G VA VVF Sbjct: 353 EKNAWAALNEGLREAEAQARSLSSLAEALGLPRVPHRIEGYDASHLQGVAPVAVMVVFVG 412 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----------------KIPD 461 P ++ YRR+ +T +DY A+ + L RR+ +A + +PD Sbjct: 413 GKPYKSGYRRFALTQPGKPNDYQALRETLYRRFMRARQEEEALAEGRITPQQAKFLPLPD 472 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE-GEGFSL 520 +IL+DGG GQ A+ V EL + G+AK E ++ + G L Sbjct: 473 LILVDGGAGQAGVAREVLEELGY-----DIPVFGLAKEE------EWIYPPHQAGNPIIL 521 Query: 521 PPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 P SPALH++Q +RDE+H A+G HR++R K S L IEG+GP RR LL+ L+ Sbjct: 522 PRSSPALHLLQRVRDEAHRFALGFHRRRREKESLRSLLSEIEGIGPARRSALLRAFPTLE 581 Query: 581 GLRNASVEEIAKVPGISQGLAEKIFWSLK 609 L ASVEE+A+VPG+++ AE ++ Sbjct: 582 ALARASVEELARVPGMTRPAAEAVYRYFH 610 >UniRef50_C7HUD8 UvrABC system, C protein n=2 Tax=Anaerococcus RepID=C7HUD8_9FIRM Length = 615 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 207/627 (33%), Positives = 332/627 (52%), Gaps = 33/627 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M++Q K LK + PGVY M ++ +IYVGKA +LKKR+S YF + RK ++ Sbjct: 1 MNNQ--IKEKLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNKNKGRKVLSM 58 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V+ I + + E EAL+LE N IK +P+YN++LRDDK YP+I ++ + PR+ R Sbjct: 59 VSHINHFEYIIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKITNEKFPRIQKVR 118 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGP 177 K KG Y+GP+P+ YAV + + L ++PIR C + + + RPCL Y I RC P Sbjct: 119 NVKKDKGYYYGPYPDAYAVNDVIELFHILYPIRTCNLNFDKGQQLDRPCLNYYIDRCKAP 178 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 CV G E+EY + + ++ FL K D + +I++M AS+ L+FE AA+ RD +A+ Sbjct: 179 CV-GKGDEKEYMENITKIKNFLENKSDYIPNLVINKMNKASEILDFENAAKYRDYHRALS 237 Query: 238 RVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 +++KQ V+ T DD+D+I ++ + V F+R GK++ + K + +++ Sbjct: 238 TISQKQKVTTTNGDDIDIIAMSKGIFYVTMQVFFMRDGKIVDREHFIIKDDYREKDEDII 297 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 +F+ QFYL + +P EIL+ SD L + + G K+ + G + + Sbjct: 298 SSFMKQFYL---NLMYIPKEILVHKLPSDLDALNLFIEKKKGNKVKINCPKLGKKKELVD 354 Query: 357 LARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASC 412 +A NA+ + + + H L L +L L + R+E +DIS+T G Q+V S Sbjct: 355 MAFRNASDMMRKYEKRLEEKERKKHSGLNGLKEILNLKSINRIEAYDISNTSGVQSVGSM 414 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD----------SKIPDV 462 VVF R EYR++ I I DDY ++ +VL RR+ +A + K+PD+ Sbjct: 415 VVFQNGIAERKEYRKFKIKTIEGPDDYHSLEEVLTRRFERAKKEIKNNNTYTGFGKLPDL 474 Query: 463 ILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 IL+DGGKGQ+ AK V +L+ S + G+ K E E + Sbjct: 475 ILMDGGKGQVKSAKKVLKDLNFS-----IEVAGLVKDDKHTTRA----IIYENEEIQIKK 525 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGL 582 P +I I++E+H AI HRK + S L+ I G+G ++++ LLK+ ++ + Sbjct: 526 RDPVYKLIYEIQEEAHRFAINYHRKLMTQTMKKSELDNINGIGKRKKENLLKHFKSVKNI 585 Query: 583 RNASVEEIAKVPGISQGLAEKIFWSLK 609 + AS+EE+ +V I + A +I K Sbjct: 586 KKASLEELMEVDLIGESQALEIIKYFK 612 >UniRef50_Q1Q607 Similar to uvrABC system protein C (UvrC exinuclease) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q607_9BACT Length = 610 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 224/614 (36%), Positives = 346/614 (56%), Gaps = 18/614 (2%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK-TEALVAQI 63 LK V PGVY M DA VIYVGKAK+LK R+ SYF+ R TE L+ + Sbjct: 1 MSLSLKLKNVPVSPGVYLMKDAKHKVIYVGKAKNLKNRVRSYFQKGTGDRLYTEYLIKHV 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAK 122 ID +T TE EAL+LE+N+IK ++P++N+ LRDDK++ I L + P + R + Sbjct: 61 VDIDFVLTETEKEALILENNFIKQFKPKFNINLRDDKNFLCIKLETNKDFPYPKVVRQKE 120 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 YFGP+ + AVRETL + P+R+C ++ +++R++PCL YQI +CLGPC GL Sbjct: 121 DDGAMYFGPYASARAVRETLRYINDTIPVRKCRDNAFKSRTKPCLYYQIHKCLGPCC-GL 179 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + Y ++ V L L GK + +++ L +M S+ L +E+AA++RDQIQ++ + EK Sbjct: 180 IDRAGYKTLIDQVILLLKGKQEDLISILRKQMYEESKQLRYEKAAKLRDQIQSIEQTVEK 239 Query: 243 QFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q +++ T D DV G + V+FIR G + SY + T + EV +F+ Sbjct: 240 QRINSLTFIDRDVFGYYLTDNDVYIEVMFIRSGNMEDIASYRLSI-NHTTIEEVFRSFLN 298 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 QFY Q R +P E+++ N D LL + L+E G+K++V RGD+ R +++A+ N Sbjct: 299 QFYSQ---TRFIPSEVIIPVNSPDAVLLEEWLTERKGKKVSVFCPKRGDKLRLIEMAQKN 355 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 A A +Q + L AL V+ L + R+ECFDIS+ G+Q V S V F P Sbjct: 356 AMNAYKVSQTQDDNYSRTLQALKDVIGLRNLPERIECFDISNIFGKQAVGSMVTFKCGMP 415 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 +++Y+R+ I + DDYA M++VL RRY +A+++ +PD++++DGGKGQL A VF Sbjct: 416 DKSKYKRFRIKTVDQIDDYAMMHEVLLRRYKRAVEEGDLPDLVMVDGGKGQLGVALRVFE 475 Query: 481 ELDVSWDKNHPLLLGVAKGAD-----RKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 EL ++ LL ++K + E + LP SP L + IRD Sbjct: 476 ELAIN----DTDLLALSKDRGKSGIPKGEQGEQVHAPHIPHPILLPSSSPVLLFLAKIRD 531 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI HRK R K S L+ I G+G R++ L+K G ++G+RNA++ ++ ++ Sbjct: 532 EAHRFAIAYHRKLRDKEYYKSPLDEIPGIGIIRKKALIKRFGSIEGIRNATINQLTEIGK 591 Query: 596 ISQGLAEKIFWSLK 609 + LA +++ Sbjct: 592 LPAKLANEVYNHFH 605 >UniRef50_Q6MDC8 UvrABC system protein C n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=UVRC_PARUW Length = 610 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 219/610 (35%), Positives = 338/610 (55%), Gaps = 18/610 (2%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQID 67 + + PGVY M + G V+YVGKAK+L++R+ YF R LVA+I I+ Sbjct: 6 KKIDLFPTLPGVYLMKNEEGEVLYVGKAKNLRQRVKQYFVPGRDGRLMIPYLVAKINYIE 65 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHP---RLAMHRGAKHA 124 V +E EALLLE+N IK ++PRYN LL+DDKSY + +S + RL ++G Sbjct: 66 TIVVTSEKEALLLENNLIKQHKPRYNALLKDDKSYIALKISQNDAWATVRLVRYKGTPEP 125 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 G YFGP+ + A R+TL LL ++FP+RQC + + R+RPCL YQ+ RC+GPC + + Sbjct: 126 DGLYFGPYTSAQAARQTLDLLNRLFPLRQCSDQEFARRTRPCLLYQMKRCVGPCTQ-KCT 184 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 + EY Q ++ FL G++ VL L M S+ LEFE+A + I+ + + E Q+ Sbjct: 185 KGEYQQHLDRTIKFLRGQNKDVLKDLYEEMRLLSEQLEFEKANHLLRTIRYIEKTIESQY 244 Query: 245 VSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V G D D IG+ V ++ R GK++GSR + + E++ +F+ Q Sbjct: 245 VDRPLGHDADAIGLFRYGEHVVVVLMIFRGGKLVGSRHFEFDNIIEED-HELLTSFLLQH 303 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y ++ +P EILL +SD+ + + LS +K+N+Q RG++ +++A+ NA Sbjct: 304 YEGATE---IPSEILLPSKISDEHPVEEILSARREQKVNLQIPQRGEKKALIEIAQKNAE 360 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLR 422 ++ + + + L + +L L R+ECFD S+ G + V+S V F Sbjct: 361 ALFKTQKDEATLREKTLLEMQELLFLTNYPTRIECFDNSNIAGSEPVSSMVAFTDGLKDS 420 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAEL 482 YR Y + + DDYAAM +VL RRY +A +++ +PD++++DGGKGQL A VF EL Sbjct: 421 KRYRTYRLKIGSKPDDYAAMYEVLTRRYKRAKEENDMPDLVVVDGGKGQLNIAIKVFEEL 480 Query: 483 DVSWDKNHPLLLGVAKGADRKAGL---ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 +++ LLG+AK A R E +F + E L +SP L ++Q IRDE+H Sbjct: 481 NITG----VDLLGLAKEAGRHDKGMTAEQVFTCYQKEPILLKANSPILFLLQKIRDEAHR 536 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HRK+R+K S+L+ I G+GP +R+ LL + G L+ + A+ E+ +V GIS Sbjct: 537 VAISFHRKRRSKKTLKSALDDIPGIGPAKRKTLLTHFGSLKKIELAADAELREVKGISAA 596 Query: 600 LAEKIFWSLK 609 E I + Sbjct: 597 NIEAIRTFFQ 606 >UniRef50_Q1LKN9 UvrABC system protein C n=32 Tax=Proteobacteria RepID=UVRC_RALME Length = 673 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 290/659 (44%), Positives = 390/659 (59%), Gaps = 61/659 (9%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + FD + L + PGVYR +DA G ++YVGKA+DLKKR+SSYF S + +VA Sbjct: 25 APAFDPRPILARMPGLPGVYRYFDADGNILYVGKARDLKKRVSSYFNKTQLSPRIAMMVA 84 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 +I +ID TV TE EALLLE+N IK PRYN+L RDDKSYPF+ L+G PR+A +RGA Sbjct: 85 KIARIDTTVVRTEAEALLLENNLIKALAPRYNILFRDDKSYPFLRLTGHKFPRMAYYRGA 144 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K +YFGPFP+ +AVRE++ +LQK+F +R CE++V+ NR+RPCL +QI RC GPCV G Sbjct: 145 TDRKHQYFGPFPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCV-G 203 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +SE++YA+ V FL G++ +VL L S+ME + LEFE+AA +RDQI A+ V + Sbjct: 204 AISEDDYARDVSNAARFLQGRETEVLEGLQSKMEAHAVQLEFEQAAAVRDQIAALSTVLK 263 Query: 242 KQFV--SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG-----TELSE 294 +Q V D+D++ VA G ACV++ +R G+ LG ++YFP E E Sbjct: 264 RQAVEEVGQARDIDILAVAVQGGRACVNLAMVRGGRHLGDKAYFPAHVDEAAMIVEEGDE 323 Query: 295 ------------------------VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLA 330 V+ F+ Q YL + P +++ +D L+ Sbjct: 324 ADGSAHEGAAADTDQLPIDRIAARVLSAFMVQHYLDQA----PPPIVVVSHRPADSALVE 379 Query: 331 DSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP 390 + AGRKI + +P+G R +L++A A AL +L++Q + R ALA + L Sbjct: 380 ALSMQ-AGRKITLVRQPQGQRKTWLEMAAQGAGLALARRLAEQGSQEARTRALAETIGLD 438 Query: 391 ----EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVL 446 R+ECFDISHT GE T ASCVVF + +EYRRYNI ITPGDDYAAM QVL Sbjct: 439 LEDLATLRIECFDISHTAGEATQASCVVFHHHEMQNSEYRRYNIADITPGDDYAAMRQVL 498 Query: 447 RRRYGKAIDD----------------SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH 490 RRY K ++ ++P V+LIDGGKGQ+ A+ VF EL + Sbjct: 499 TRRYQKLVEQLQEAGGDPAGDGGDGVPRMPRVVLIDGGKGQVEVARQVFEELGLDIGL-- 556 Query: 491 PLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA 550 L+GVAKG RK GLETL F L S AL ++ IRDE+H AI G R +RA Sbjct: 557 --LVGVAKGEGRKVGLETLVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRA 614 Query: 551 KVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 K + TS LE IEGVG +RRQ LL GGL+G+ AS++E+A V GIS+ LAE+I+ L Sbjct: 615 KARTTSRLEEIEGVGARRRQKLLTRFGGLRGVMAASIDELASVEGISRTLAEEIYRQLH 673 >UniRef50_B3QRR8 Excinuclease ABC, C subunit n=3 Tax=Bacteria RepID=B3QRR8_CHLT3 Length = 640 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 205/623 (32%), Positives = 340/623 (54%), Gaps = 36/623 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQ 65 + LK + + PGVY+ D VIYVGKAK+L+ R+ SYFR+ + S KT LV +I Sbjct: 30 LQFKLKNLPTSPGVYQFKDKDERVIYVGKAKNLRARVQSYFRNLSEHSGKTRLLVRRIMD 89 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +++ +T TE EAL+LE+N IK +PRYN+ L+DDKSYP+I ++ + PR+ R + Sbjct: 90 LELILTGTEVEALILENNLIKQLKPRYNINLKDDKSYPYIVVTNEPFPRVFPTRNVRRDG 149 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY-----RNRSRPCLQYQIGRCLGPCVE 180 +Y+GP+ +R L + +IF +R C ++ + + CL Y I +CLGPC E Sbjct: 150 SKYYGPYTETRQMRMLLDAISEIFQVRSCSLNMTDENIAARKFKVCLDYHIKKCLGPC-E 208 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 L S E+Y ++ V+ L GK ++ L SRM+ ++ L+FE AA I+ Q++A+ R + Sbjct: 209 ALQSREDYDAMIDEVKKLLRGKTKDIVRSLESRMKNYAKELKFEYAAEIKRQLEALERYS 268 Query: 241 EKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +Q V T + D D+ VA + AC V +R GK+LGS+ ++ ++ +V Sbjct: 269 ARQKVLTTDEIDRDIFAVAREGDDACGTVFKVRDGKLLGSQHFYFSNVEDEPMANLVGRL 328 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAG-----RKINVQTKPRGDRARY 354 + ++YL+ + LP EI S++ + L + +K++ GD+A+ Sbjct: 329 LEKYYLETTD--ILPNEIFTAEQPSNQDAIEALLQKRMSEIGEQKKVHFVIPQIGDKAKL 386 Query: 355 LKLARTNAATALTSKLSQQSTVHQ------RLTALASVLKLPEVK-RMECFDISHTMGEQ 407 + + NA L+ Q+ + + +L L+L + R+ECFD S+ G Sbjct: 387 VDMCAANAKHLLSEYQLQKQKRGEAKAIPHAVRSLERDLRLAKPPRRIECFDNSNFQGTD 446 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILID 466 VAS + F P +++YRR+ I + +D+A+M +++ RRY ++ +S +PD+I++D Sbjct: 447 PVASMICFVDGKPKKSDYRRFKIKTVEGANDFASMAEIIERRYTGSLAESLPMPDLIVVD 506 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ A V + V ++G+AK LE +FF E +LP S + Sbjct: 507 GGKGQLSSAYAVLQKSGVG-----VPVIGLAK------RLEEVFFPNEQLPHNLPKTSSS 555 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L ++Q +RDE+H AI HR+ R+K + L IEG+G + + LLK G + ++ AS Sbjct: 556 LKLLQQVRDEAHRFAITFHRELRSKRTLQTELTEIEGIGKTKAEKLLKTFGSVAEVKKAS 615 Query: 587 VEEIAKVPGISQGLAEKIFWSLK 609 E +A+ + + AE+IF + Sbjct: 616 AEALAEA--VGKKAAERIFAHFQ 636 >UniRef50_Q4FPI1 UvrABC system protein C n=3 Tax=Candidatus Pelagibacter RepID=UVRC_PELUB Length = 611 Score = 623 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 215/612 (35%), Positives = 351/612 (57%), Gaps = 19/612 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + PGVYRM D ++YVGKAK+L RL SY +T +++Q ++ Sbjct: 11 IRKELPLIPKSPGVYRMLDHKDVILYVGKAKNLPNRLKSYVAEKNHIIRTARMLSQTFKL 70 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAK 125 ++T T E+EALLLE N IK ++P++N+LL+DDKS+PF+F+S D ++ HRG K + Sbjct: 71 EITTTANESEALLLEANLIKKHKPKFNILLKDDKSFPFVFISNKDQWAQVTKHRGKKDKE 130 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGPF + T+ +LQKIF IR C++S ++NR RPC+ YQI RC GPCV+ + + Sbjct: 131 GFYFGPFASAGTANWTIKMLQKIFQIRVCDDSTFKNRKRPCILYQIKRCSGPCVD-YIDK 189 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y + V+ F+SGK + L +ME AS+ L+FE A+ RD+I+++ + Q + Sbjct: 190 EDYKKSVDQAIQFVSGKSRDIQKNLSKQMEEASEKLDFERASIFRDRIKSLNIIQSSQRI 249 Query: 246 SNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + D DVI ++G C+ V F R + G+++YFPK LSE++ +F+ QFY Sbjct: 250 NEANLIDADVIAAYKESGKTCIQVFFYRSKQNWGNQAYFPKHDPDQSLSEIMSSFLMQFY 309 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + + +P I+++ + DK L+ ++LS+ I++ +G +A+ + +A NA Sbjct: 310 ----ENKNVPKLIIINTEIEDKKLIEETLSKKENSAISINVAKKGTKAKVIAMAEKNAKE 365 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L K+ + + +A L + +E +D SH G +V + + F G ++ Sbjct: 366 SLNRKIYETNNNKNLFEGVAKKFDLKNGLNLVEVYDNSHISGTNSVGAMITFGNEGFVKK 425 Query: 424 EYRRYNITGI-TPGDDYAAMNQVLRRRYGKAIDDS----KIPDVILIDGGKGQLAQAKNV 478 YR+++I DD+A + +VL RR+ +A+ + +PD+ILIDGGKGQ + AK V Sbjct: 426 RYRKFDIKTKGNEQDDFAMLKEVLTRRFKRAMLEKGNYLTLPDLILIDGGKGQYSSAKEV 485 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 E + + ++ +AKG R +G ET F+ +G+ F + P L +Q +RDE+H Sbjct: 486 LDEFGL----HDLPMIAIAKGKLRNSGDETFFY--KGKSFKFDKNDPTLFFMQRLRDEAH 539 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR KRAK S L+ I+G+G R++ LL + G + + +AS +EI V G+ + Sbjct: 540 RFAITSHRAKRAKGITKSLLDQIDGIGSIRKRALLNHFGSARAVESASFDEIKSVEGVEE 599 Query: 599 GLAEKIFWSLKH 610 +A+KI+ Sbjct: 600 KVAKKIYNFFHE 611 >UniRef50_A1BED8 UvrABC system protein C n=12 Tax=cellular organisms RepID=UVRC_CHLPD Length = 631 Score = 622 bits (1605), Expect = e-177, Method: Composition-based stats. Identities = 216/626 (34%), Positives = 332/626 (53%), Gaps = 39/626 (6%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALVAQIQQ 65 + ++ S PGVY+ +A G VIY+GKAK+L+ R+ SYFR+ KT +V +I Sbjct: 17 PLDKVASLPSSPGVYQFKNAQGRVIYIGKAKNLRNRVRSYFRNPQQLFGKTLVMVGKIAD 76 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I+V +T +E EAL+LE+N IK +PRYNV L+DDK+YP++ ++ + PR+ + R K Sbjct: 77 IEVIITSSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITNEPFPRILVTRQVKKDG 136 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSV-----YRNRSRPCLQYQIGRCLGPCVE 180 +FGP+ +R L + IFPIR C+ + R + + CL Y I +C GPC E Sbjct: 137 STWFGPYTEARQLRSILDFIGSIFPIRSCKLRLSPENISRGKFKVCLDYHIHKCKGPC-E 195 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GL++EEEY + + L GK + L RM + ++ L+FE+AA ++ QI +++R Sbjct: 196 GLLTEEEYLLMIVEITRLLKGKTSATIRSLNERMLSFAKELKFEQAAELKTQIDSLKRYA 255 Query: 241 EKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q V + D DV VA C V IR+GK+LGS + G + +++ Sbjct: 256 ERQKVVTSDTLDRDVFAVASRNDDGCGVVFKIREGKLLGSERLYMNNTEGVSVQDLLARV 315 Query: 300 VGQFYLQGSQMRTLPGEILLDFNL--SDKTLLADSLSE------LAGRKINVQTKPRGDR 351 V ++YL+ LP EI L L +K L + L R I + G++ Sbjct: 316 VERYYLETC--NLLPDEIFLQTELPAEEKETLENLLISKISAEGKQKRTIRLTVPIIGEK 373 Query: 352 ARYLKLARTNAATALTSKLSQQSTVHQRLTA------LASVLKLPEVK-RMECFDISHTM 404 A ++L R NA L L Q+ + L LA +L LP+ R+ECFD SH Sbjct: 374 AHLIQLCRENARHHLEEYLIQKQKRGEALREHSGLIALAELLHLPKTPNRIECFDNSHFH 433 Query: 405 GEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVI 463 G V+S V F +++YR++ + + DDYAAM++VL RRY + + +PD+I Sbjct: 434 GTDYVSSMVAFVHGKAKKSDYRKFKLKTVQGSDDYAAMHEVLTRRYSGTLSVELPLPDLI 493 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 ++DGGKGQL+ A V L + ++G+AK +E +F + F+LP Sbjct: 494 VVDGGKGQLSTAVKVLVSLKL-----DIPVIGLAK------RIEEIFTPHTSDPFNLPKT 542 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 SPAL +IQ +RDE+H A+ HRK R + + L TI+G+G K Q LL++ G + +R Sbjct: 543 SPALKLIQQLRDEAHRFAVTYHRKLRTERTLETELTTIQGIGEKTAQKLLRHFGSVDLIR 602 Query: 584 NASVEEIAKVPGISQGLAEKIFWSLK 609 A V+E+ G A ++ Sbjct: 603 TAGVDELRAAAG--NKTAALLYRFYH 626 >UniRef50_A5UY12 Excinuclease ABC subunit C n=5 Tax=Chloroflexaceae RepID=A5UY12_ROSS1 Length = 669 Score = 622 bits (1605), Expect = e-177, Method: Composition-based stats. Identities = 239/669 (35%), Positives = 356/669 (53%), Gaps = 71/669 (10%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS-RKTEALV 60 +D + L+ V PGVY +A G +IYVGK+K L+ R+ SYF KT LV Sbjct: 10 ADPTAFEERLRAVPLAPGVYLWKNAQGKIIYVGKSKRLRDRMRSYFNQTGDPYGKTARLV 69 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 QI V VT TE EALLLE IK ++PR+NVLL+DDKSYP+I ++ +T PR+ R Sbjct: 70 EQIADFQVIVTSTELEALLLEMTLIKQHRPRFNVLLKDDKSYPYIKVTLHETWPRIFATR 129 Query: 120 GAK-HAKGEYFGPFPNGYAVRETLALLQKIFPIR---QCENSVYRNRSR---PCLQYQIG 172 + YFGP+ + AV TL L ++F R +C + + R PCL Y I Sbjct: 130 NPRWEEGARYFGPYSSAGAVYRTLDQLNRLFAFRPPSRCPDDKFNRHRRMGKPCLYYDIK 189 Query: 173 RCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQ 232 RCLGPCV GLV++EEY +E V FL GK D V+ L +ME A++ L+FE AAR+RD Sbjct: 190 RCLGPCVPGLVNQEEYRATIESVCRFLEGKSDLVVKTLRRQMEEAAERLDFERAARLRDS 249 Query: 233 IQAVRRVTEKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE 291 I+ + ++++Q V D DVIG+A + GMA V VL IR GK++ + S+ + G Sbjct: 250 IRDIELISQRQQVLRHDDADQDVIGLAREEGMAVVQVLCIRAGKLISAESFPLQNAEGER 309 Query: 292 LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR 351 +++ +F+ QFY +++ +LL L + ++ L++ AGRKI + T RG++ Sbjct: 310 NEDLLASFLTQFYDTAAELPA---ALLLPMPLDEPAVIEQWLAQKAGRKITLHTPQRGEK 366 Query: 352 ARYLKLARTNAATALT----SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGE 406 R ++LA NA L L+ + L+ + +L L + R+ECFD+S+ G Sbjct: 367 RRLVELAEQNARQKLEELRLQWLNSEQRAVAGLSEVRDLLGLSALPTRIECFDVSNIQGS 426 Query: 407 QTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI------------ 454 V + VVF+ P ++ YR++ I + +D A++ ++LRRR+ +A Sbjct: 427 HAVGAMVVFERGEPKKSRYRKFRIKTVQGANDVASIQEILRRRFRRAAMVIGEEEQQSEA 486 Query: 455 -----------------------------------DDSKIPDVILIDGGKGQLAQAKNVF 479 +++PD+ILIDGG GQL A Sbjct: 487 QRMNGSVNGPAEADDQEEAEKTDTPGSHADIERQETWAELPDLILIDGGVGQLNGAIQAL 546 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 +L +H ++GV KG +R L + L DS AL +I+ I +E+ Sbjct: 547 RDL----RFDHIPVVGVVKGPNRDRF--DLLLPGASDVIVLERDSAALRLIRMIDEEADR 600 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 A HRK R+K +S LE I G+GPKRRQ+LLK G L+G+RNA+V+E+A VPG+++ Sbjct: 601 FAKDYHRKLRSKSATSSRLEEIPGIGPKRRQLLLKRFGSLEGIRNATVDELAAVPGMTRK 660 Query: 600 LAEKIFWSL 608 AE++ L Sbjct: 661 AAEELKSML 669 >UniRef50_A0Q5Q7 UvrABC system protein C n=18 Tax=Francisella RepID=UVRC_FRATN Length = 612 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 259/609 (42%), Positives = 384/609 (63%), Gaps = 9/609 (1%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD K+FL +T+ GVYRM D G +IYVGKAK+LK R++SYF KT +V QI Sbjct: 9 FDLKSFLANLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIA 68 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK-H 123 +I++T+T ++ EA LLE+N IK ++P+YN+L +DDKSYP++ +S D PR++ +RG + Sbjct: 69 RIEITITPSDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVISRDKFPRVSFYRGKSAY 128 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 KG+ FGP+ + +V+ TL +QKIFPIRQCENS Y++R RPCLQYQI RCL PCV GLV Sbjct: 129 KKGQCFGPYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCV-GLV 187 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S+++Y +Q+ ++ FL+GK VL ++ ++M AS+++E+E+A RDQ+ +R++ ++Q Sbjct: 188 SQQQYDEQLAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQ 247 Query: 244 FVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V DVIG+ A + +L I+ G V+ R + G + + ++ F+ Sbjct: 248 IVDIQEDKTFDVIGIYMQDSYASIALLQIQNGDVVADRHWSIDAK-GQDKTSIMHAFLSH 306 Query: 303 FYLQGSQMRTLPGEILLD-FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 FYL P I+L +D T L +S+S+ G+ IN P D ++LKLA N Sbjct: 307 FYLGDEIRNIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVN 366 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGP 420 A L S +S +RL +L L+L + +KR+ECFDISH GE T+ASCVV+ G Sbjct: 367 ARQKLNIYTSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGE 426 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 R +RRYNI I GDDYAA+ Q + RR ++ +PDV++IDGGKGQ+ QA+ VF Sbjct: 427 DRKSHRRYNIKDIKAGDDYAAIYQAVSRRVSSGLEADNLPDVMIIDGGKGQIHQAEAVFR 486 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 E + ++ L+ + KG +R +G E ++ + ++L +P +++ +RD +HDH Sbjct: 487 EFGI---QDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVRDSAHDH 543 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI G RKK + + +S +E IEGVGPKRR+ L+ Y GG Q L ASV+EIAKV GIS+ L Sbjct: 544 AIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVKGISKKL 603 Query: 601 AEKIFWSLK 609 A++I+ Sbjct: 604 AQEIWECFH 612 >UniRef50_A4XIQ3 UvrABC system protein C n=2 Tax=Clostridia RepID=UVRC_CALS8 Length = 593 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 202/606 (33%), Positives = 328/606 (54%), Gaps = 22/606 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + L + + PGVY M D G VIYVGKA +L+ R+ YF+++ + KT +V +I+ Sbjct: 2 LTLQEKLANLPTTPGVYMMKDENGKVIYVGKAVNLRNRVRQYFQNSDMTPKTRLMVKKIK 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 + VT TE EAL+LE N IK Y+P+YNVLLRDDK+Y +I ++ + PRL R + Sbjct: 62 DFEYIVTDTEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITNEMFPRLVTTRKVEKD 121 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY--RNRSRPCLQYQIGRCLGPCVEGL 182 +YFGP+ +GY+V++T+ LL+ +F +R C+ + RPCL + I RCLG C +G Sbjct: 122 GAKYFGPYVSGYSVKQTIELLKSLFMLRTCKRKFPDQLGKGRPCLNFYIERCLGVC-KGD 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + EEEY + VE LSGK D+++ +L +M + NL FE+A I+++I ++ ++ K Sbjct: 181 IPEEEYQKLVEKAVKVLSGKGDEIVEELKKKMFEYADNLMFEKAQEIKNKITSLEQIITK 240 Query: 243 QFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V DVI A D+ C+ VL IR GK++ + K EV E F+ Sbjct: 241 QKVIYADDRSEDVINYAEDSSNICIVVLVIRNGKLINKEEFVLKN-----DEEVFERFLE 295 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y S + ++P EI+L + + + + +L G K + +G++ + L++A+ N Sbjct: 296 QYY---SDVVSVPKEIILPHEVGNGENIEKMIEKLYGFKAKIVVPKQGEKKQLLEMAKKN 352 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDANGP 420 A +L +K ++ + L L ++L + ++++E +DIS+ G V + VVF+ Sbjct: 353 AEISLVNKQRIENYYIEALLHLKNLLGIEHDIEKIESYDISNLAGADNVGTLVVFEDGKF 412 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + YR++ + DD ++ +VL RR+ ++PD+ILIDGG+ Q+ A V Sbjct: 413 NKDLYRKFKLKSFEGQDDIRSVKEVLTRRFTNLEKHGRLPDLILIDGGQNQVNAAVEVLR 472 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L + + G+ K K +G+ ++ DS +I I++E+H Sbjct: 473 SLGFN-----IPVAGMVKDDRHKTRD----LIYKGQELNIQRDSLVFKLISTIQEETHRF 523 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A+ HR+ R K S L+ IEG+G KR+ L + G + LR AS+EEI K I + Sbjct: 524 AVKYHRELRKKHLYESILDEIEGIGEKRKIKLFRIFGSIDNLRKASIEEIVKAADIPYDI 583 Query: 601 AEKIFW 606 A KI Sbjct: 584 ALKIKE 589 >UniRef50_Q0B0A0 UvrABC system protein C n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=UVRC_SYNWW Length = 601 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 217/618 (35%), Positives = 348/618 (56%), Gaps = 27/618 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M D+ K LK V QPGVY + G V+YVGKA+ L++R+ SYF++ K +A+ Sbjct: 1 MGDEM-LKERLKKVPLQPGVYLFKNQEGQVLYVGKARVLRQRMRSYFQAPERMHPKVKAM 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 +A + D VTH+E EAL+LE+N IK Y+PRYN+ LRDDKSYP+I ++ D PR+ + Sbjct: 60 MAWVSDFDFIVTHSEMEALILENNLIKSYKPRYNIDLRDDKSYPYIKVTVADKFPRVYLA 119 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R K YFGP+ + ++R+TL LL +F +R C ++R RPCL +G+CL PC Sbjct: 120 REKKDGVSRYFGPYTDVTSLRDTLKLLNGVFGLRSCRTM--KSRRRPCLNRDMGKCLSPC 177 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 G +SEEEY+Q+V+ + FL G +++ + M A+++LEFE+AAR+RDQIQ++R+ Sbjct: 178 -SGEISEEEYSQKVQALITFLEGDFQEIVREKEKEMAMAARSLEFEKAARLRDQIQSLRQ 236 Query: 239 VTEKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + EKQ + + +LD++G+ V V +R GK++G +++ K P + +E +E Sbjct: 237 LGEKQKIELASPYELDLVGMLSGEKENLVLVFKVRSGKIVGKDTFWLKRPIQEDENEAME 296 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 F+ +Y + +P EILL S+ L+ L ++ ++ RG++ + L + Sbjct: 297 FFIKHYYDEN---PDIPPEILLSHLPSESKLVEAWLKSRVSHRVELRVPQRGEKKQVLNM 353 Query: 358 ARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFD 416 NA L K +++ L+ LA VL L V R+ECFD+SH GE+TVAS VVF Sbjct: 354 LLENARLLLEEKQREENKQLAALSHLARVLDLEVVPNRLECFDVSHLAGEETVASMVVFV 413 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI----PDVILIDGGKGQL 472 P + YR + I +D A++ + +RRR A + PD+IL+DGG GQ+ Sbjct: 414 GGQPEKKAYRHFKIRT-QQNNDTASLAETVRRRLENARQANPAFLPEPDLILVDGGLGQV 472 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 V E+++ L +A E ++ + + L L ++Q Sbjct: 473 NAVAAVLQEMNL-----DIPLFALA------EKNEEIYRPGKSQPLVLAARDNGLQLLQR 521 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI +RK+RAK +S+L+ I G+G +R++ LL + + ++ AS++EIA Sbjct: 522 LRDEAHRFAIEYNRKRRAKKIRSSALDEIPGIGKQRKKNLLVHFTSVAKIKEASLDEIAA 581 Query: 593 VPGISQGLAEKIFWSLKH 610 VPG+++ A + + Sbjct: 582 VPGMNRKAALAVIEFFHN 599 >UniRef50_C7RHW1 Excinuclease ABC, C subunit n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHW1_ANAPD Length = 616 Score = 620 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 202/627 (32%), Positives = 322/627 (51%), Gaps = 32/627 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M+ + K LK + PGVY M +A +IYVGKA LK+R+ YF + K A+ Sbjct: 1 MTKK-QIKEKLKELPDLPGVYIMRNAEDEIIYVGKAISLKRRVRQYFDNNKNKGAKVLAM 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V I + + E EAL+LE N IK +PRYN++LRDDK YP+I + + +PR+ R Sbjct: 60 VKNIDHFEYIIVQNEVEALVLESNLIKKNRPRYNIVLRDDKQYPYIKICKEKYPRIKKVR 119 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGP 177 G YFGPFP+ YAV + + L +P R C + + RPCL Y I +C GP Sbjct: 120 QVLKDGGRYFGPFPDAYAVNDAIDLFHLYYPFRTCNLNFDKGARLDRPCLNYFIHKCKGP 179 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 CV+ E+ Y ++ V FL K +++ ++++M AS++L FE AA+ RD +A+ Sbjct: 180 CVD-KEDEKRYLNHIDDVVKFLENKSEKIPNWVLAKMNDASKDLNFEMAAKYRDYYRALS 238 Query: 238 RVTEKQFVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 ++E+Q V+ T GDDLD+I ++ + V F+R GK++ + K S+++ Sbjct: 239 VISERQNVTETGGDDLDIIAMSKGMNSIIIQVFFMRMGKIVDREHFIIKNDFMETDSDIM 298 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 +F+ QFYL +P EIL+ + +D +++ LS K+ + G + + Sbjct: 299 SSFIKQFYLDIM---YVPKEILVQYMPADFDSISEFLSRKKKSKVYIHNPKLGKKKELVD 355 Query: 357 LARTNAATALTSK----LSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASC 412 +A NA ++ + L +L L +V R+EC+DIS+T G +V S Sbjct: 356 MASRNALDMRIKYDKRVERKERKKSSGINQLMDILNLKDVFRVECYDISNTSGVLSVGSM 415 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------IPDV 462 VVF+ P EYR++ I + DDYA+ +VL RR + +++ + +PD+ Sbjct: 416 VVFEGGIPTPKEYRKFKIKTVVGSDDYASHREVLTRRLKRGLEEKEKGNTQTGFGSLPDL 475 Query: 463 ILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP 522 IL+DGGKGQ+ AK V L +S + G+ K E ++ Sbjct: 476 ILMDGGKGQVTIAKEVIDGLGLS-----IEVAGLVKDDKHTTRA----IVYNNEEIAINR 526 Query: 523 DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGL 582 P +I I++E+H AI HRK T+ L+ I+GVG K R+ L K+ + + Sbjct: 527 RDPVYKLIYEIQEEAHRFAINYHRKLMQNTMKTTELDNIKGVGEKTRKNLYKHFKTISNI 586 Query: 583 RNASVEEIAKVPGISQGLAEKIFWSLK 609 + ASVEE+ +VP + + A +I+ + Sbjct: 587 KKASVEELMEVPLVGKVQALEIYKYFR 613 >UniRef50_Q6AKB8 UvrABC system protein C n=3 Tax=Deltaproteobacteria RepID=UVRC_DESPS Length = 607 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 225/610 (36%), Positives = 347/610 (56%), Gaps = 14/610 (2%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQ 62 + L++ +PGVY M DA VIYVGKAKDL KRL+SY R S+ KT ++ + Sbjct: 2 PMFPEKILQSTPHKPGVYLMLDAKARVIYVGKAKDLVKRLTSYTRHSSSEHNKTTVMLKK 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGA 121 ++Q+ +T TE EAL+LE + IK ++PRYN++LRDDK+YP+I ++ G+ PR+ M R Sbjct: 62 VEQVKTIITTTEKEALILEASLIKKHKPRYNIILRDDKNYPYIAVTVGEEWPRVMMVRRK 121 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + YFGP+ + A+ TL L+ +FP+R C R R+RPCL QIG+CL PC G Sbjct: 122 RRDNSRYFGPYSSATAMWATLKLIASLFPLRNCRGEKLRPRTRPCLNRQIGKCLAPCT-G 180 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 VS + Y + V+ + L L GK +L +L +M AS+ L FE+A + RDQI+A++ E Sbjct: 181 NVSRKIYMENVDKILLLLQGKSRDLLAELKRQMLQASERLNFEQAGQFRDQIRALKTTLE 240 Query: 242 KQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 KQ V+ G + DV G V++LF+R G V GSRS+F + G + S+V+ + Sbjct: 241 KQLVAAGHGKNQDVFGYVRSGTTVAVNILFVRDGLVSGSRSFFIEDYFGLD-SQVLSQTI 299 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y + P EILL F+ + LL++ L++ + ++ RGD +++A T Sbjct: 300 SQYYD---RETPPPKEILLPFSPENFELLSEYLADFTTHILQIKIPQRGDSTILVEMANT 356 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 NA K ++ + ++ L+L +EC DIS+ G+ + S V F Sbjct: 357 NARQLFAEKEKKERSWQSLGKSIKEKLQLSRTPETIECLDISNISGQHAIGSLVCFSGGE 416 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 ++ +R Y I I DDY M +V+ RR+ + I + +P++ ++DGGKGQL A V Sbjct: 417 ANKSRFRHYKIRTIEGPDDYGMMREVMERRFKRGIKEGNLPNLFVVDGGKGQLGMAMAVA 476 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL ++ N +G+AK +R E L+ LP SP L + IRDESH Sbjct: 477 RELGIT---NELDWIGIAK--ERHEEGEKLYKPGRKNPILLPAHSPVLLYLMRIRDESHR 531 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 + I HRK R + +S L+ IEG+G R+++LLK +G L+ ++ AS++++ +V GI Sbjct: 532 YGITFHRKLRNRATLSSELDEIEGIGDNRKKLLLKKIGSLKKIKEASLQKLQEVEGIGPL 591 Query: 600 LAEKIFWSLK 609 LA+KI+ SL+ Sbjct: 592 LAKKIYTSLQ 601 >UniRef50_C1FMJ8 UvrABC system protein C n=14 Tax=Clostridium RepID=UVRC_CLOBJ Length = 618 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 203/631 (32%), Positives = 323/631 (51%), Gaps = 40/631 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQI 63 FD + LK + +PGVY M + G +IYVGKAK LK R+ YF+ + S K +A+V I Sbjct: 2 FDLEYQLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 ++ + +T +E EAL+LE N IK Y+P+YN+LL+DDK YPFI ++ + PR+ R Sbjct: 62 EEFEYIITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVT 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS--RPCLQYQIGRCLGPCVE 180 +YFGP+ +G +V++ + L++K FPIR C+ ++ RPCL YQIG C PC + Sbjct: 122 KDGSKYFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQ 181 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + + EY + ++ V LSGK ++ ME A++NLEFE+AA +RD+I + ++ Sbjct: 182 -YIKKSEYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIG 240 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + N D+ D I + D C V F+R GK++G + + T S ++ F Sbjct: 241 EKQKIILNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNF 300 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + +FY + +P I + N+ D+ LL L+ K ++ +G++ L L Sbjct: 301 LKEFYGGTA---YIPKTIYVP-NIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVE 356 Query: 360 TNAATALT----SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVV 414 NA T L L +++ L L ++L+L E R+E FDIS+ G +V S VV Sbjct: 357 KNAKTTLENFKLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVV 416 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK---------------- 458 F+ ++YRR+ I + DDY +M ++L RR+ + + K Sbjct: 417 FEKGRAKPSDYRRFKINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSV 476 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 PD+IL+DGGKGQ+ A V ++ + G+ K + GE Sbjct: 477 FPDLILMDGGKGQINIALEVLNTFNI-----DIPVCGMVKDNKHRTRG----LIYNGEEI 527 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 + + I ++DE H AI HR R K S L+ I +G KR++ LL Sbjct: 528 IINKYGSVMKFITRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKS 587 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + ++ A+ EE+ +P + + AE + K Sbjct: 588 IDNIKKATYEELLSIPSMDKKSAECVLEFFK 618 >UniRef50_C1A8T0 UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=UVRC_GEMAT Length = 616 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 215/610 (35%), Positives = 315/610 (51%), Gaps = 29/610 (4%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 L + PGVY D G V+YVGKAK L+ R+ SY+ + + +S KT A+V +++ ++ Sbjct: 5 QKLPHLPESPGVYLWKDVEGQVLYVGKAKRLRSRVRSYWAQEHESSPKTRAMVRKVRDLE 64 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V +E AL+LE IK Y PR+N+ LRDDKSYP+I ++ + PR+ + R Sbjct: 65 TIVVPSEAHALILEATLIKEYHPRFNIALRDDKSYPYIRVTVNEPFPRVMVTRRLLDDGA 124 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVY-RNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGP+ + A+R L ++++IF +R C ++ RPCL Y I RC PCV G S Sbjct: 125 RYFGPYTDVGAMRRALNVVKRIFTVRSCHYALPGEAPERPCLDYSIKRCKAPCV-GYQSR 183 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y ++ V FL G+ V+ + RM AS+ L+FE AA +RD + + ++ V Sbjct: 184 EDYRAMIDEVVWFLDGRTSDVMHHVRERMLDASERLDFERAAELRDALAHLEKMESPSVV 243 Query: 246 SN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 G D DV+G A D ACV V+ IR GK+L + E V+ + Q+Y Sbjct: 244 LEVEGGDRDVVGYARDGEDACVAVMRIRGGKLLARDHRLLEHAEDEEDGAVLGACLAQWY 303 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 GE+L+ F+ D+ L SL +++ RG R + LA NA Sbjct: 304 RTAEAR---AGELLVPFDFEDRESLEASLDG-----THIRVPQRGPRRALVDLADQNARH 355 Query: 365 ALTSK----LSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANG 419 L L + L L LP + R + CFDISH G VAS V F+ Sbjct: 356 LLEEFKLAALEADERAVDPVYELQRELGLPRLPRSLVCFDISHAQGTDVVASAVFFENGR 415 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNV 478 P R+EYR++ I DD+ +M++V+ R + + + ++ +PD+ +IDGGKGQL A+ Sbjct: 416 PKRSEYRKFKIKVFEGNDDFRSMHEVVTRYFRRRLDEEKPLPDLAVIDGGKGQLGAARAA 475 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 EL L+ +AK E +F + LP SPAL ++Q RDE+H Sbjct: 476 LDELG----APQIGLISLAKRE------EEIFQYGRPDPVRLPRRSPALRMLQQARDEAH 525 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI R+KRA TS L I GVGP +R+ LL G +QG+R ASVE+IA +PG Sbjct: 526 RFAITFQRQKRAARTITSELLKIPGVGPTKRRALLHTFGSVQGVREASVEQIAAIPGFGA 585 Query: 599 GLAEKIFWSL 608 A ++ +L Sbjct: 586 ASARRLLEAL 595 >UniRef50_UPI0001C41B0D excinuclease ABC C subunit UvrC n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B0D Length = 615 Score = 616 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 205/627 (32%), Positives = 342/627 (54%), Gaps = 53/627 (8%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + +PG+Y M D +IYVGK+K L+ R+ SYF+ NL S KT+ L++ ++ VT Sbjct: 9 DELPQKPGIYIMKDINEEIIYVGKSKSLRNRVKSYFQKNLDSPKTKVLMSHFNSLEYIVT 68 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGP 131 +TE EAL+LE N IK ++PRYN+ L+DDK YP++ ++ + P++ + R G Y+GP Sbjct: 69 NTEKEALILEANLIKKHRPRYNIRLKDDKRYPYVKITDEDFPKIVITR-TISKTGTYYGP 127 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 F + AVR+T+ L+++F IR C + PCL QI C PC +G +S+EEY + Sbjct: 128 FTDVTAVRQTVKFLKQLFRIRTC-----KRMDGPCLNSQIDLCYAPC-DGQISKEEYKEH 181 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD- 250 ++ + LF GK ++++ L M+ A++ E+E+AA IRDQI ++ V +KQFV D Sbjct: 182 IKKIDLFFQGKYNKIIKDLEIEMKQAAERQEYEKAAVIRDQISSIDEVMKKQFVEFENDL 241 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 D D+I +A+ A V+ IR GK++G + T EV+ F+ Q+Y Sbjct: 242 DQDIIAIAYTIHNAVAVVMNIRNGKIMGKDDFTMDGSENTTSDEVISAFIKQYYGINRH- 300 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 +P E+LL+ ++ DK L+ + LS+L G K++++ +G++ R +++A NA Sbjct: 301 --IPKEVLLEEDIPDKELIEEWLSDLRGNKVSLKVPQKGNKLRLVRMAGKNAEII----K 354 Query: 371 SQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 +Q+ + + L L L ++ R +E +DIS+ G+ V S V F P + +Y+++ Sbjct: 355 NQRQKMENSMMELKRYLNLKKLPRVIEGYDISNISGKLAVGSKVSFLDGKPNKKQYKKFK 414 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDD--------------------------SKIPDVI 463 + +D+A M ++L RR + + P++I Sbjct: 415 MNT-PGPNDFAMMKELLERRLKPLKEHYEKVRINEEHTKHNEAETEKIEPLKLGEEPNLI 473 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 +IDGGKGQL A +V E +++ H ++G+AK E ++ +P D Sbjct: 474 VIDGGKGQLGMAVDVLKEYNLT----HIPIIGLAKE------FEEIYIPNSSFPIIIPQD 523 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 + ALH++Q +RDESH A+ HRK R+K S L+ IEG+G KR+ LL++ G ++ Sbjct: 524 NEALHLLQQVRDESHRFAVTYHRKLRSKKIEESPLDEIEGIGKKRKLELLRHFGDFDSIK 583 Query: 584 NASVEEIAKVPGISQGLAEKIFWSLKH 610 ASVEE+ V G+++ +A ++ Sbjct: 584 KASVEELKGVDGMNEKVALNVYNYFHE 610 >UniRef50_Q1AUH1 UvrABC system protein C n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=UVRC_RUBXD Length = 611 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 222/623 (35%), Positives = 331/623 (53%), Gaps = 27/623 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M + + + PGVY D G V+YVGKA++++ R++SYF RS K L Sbjct: 1 MPENSYPDR--SHLPASPGVYIFRDGEGRVLYVGKARNIRSRVASYFTRSGDGRPKIAEL 58 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 +++QID ETEAL+LE N IK ++PR+N LRDDKSYP+I ++ GD +PR+ Sbjct: 59 RERVRQIDFIAARGETEALVLEANLIKRHRPRFNASLRDDKSYPYIVVTTGDEYPRVFAT 118 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-PCLQYQIGRCLGP 177 RG + YFGPFP+ +V TL +L K F R+C RS PCL Y IGR P Sbjct: 119 RGPHDPRHRYFGPFPSAGSVHATLDVLNKTFRFRKCRGPEPGRRSGIPCLNYHIGRSAAP 178 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C+ G VS+EEY + V FL G+ D ++ + +M A+ ++FE AAR+RD+ A+R Sbjct: 179 CI-GAVSKEEYGAIIADVIAFLEGRVDGLIREREEQMRRAAAEMDFERAARLRDEAAALR 237 Query: 238 RVT-EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 V +Q + D D +G + ACV + +R+G+++G S+ G + V Sbjct: 238 HVRDRQQATIASEDSFDAVGAYAEGEEACVQIFAVREGRIVGRDSFLLDNYGEQDAESVA 297 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTL-LADSLSELAGRKINVQTKPRGDRARYL 355 +FV Q+Y + +P E+L+ + +A+ LS L G ++ V+ RGD+ R L Sbjct: 298 LSFVPQYYETAA----VPREVLVSSPDEEALAPIAEHLSRLRGTRVEVRRPQRGDKRRVL 353 Query: 356 KLARTNAATALTSKLS----QQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVA 410 +LA NA L + + ++S + L L L LP + R+EC+DIS+TMG +VA Sbjct: 354 ELALHNARMGLEHERAMSEARRSRLSSTLDRLREELALPRLPMRIECYDISNTMGTNSVA 413 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----KIPDVILID 466 S VVF P + +YRR+ I + DD A+M +V+RRR + + PD+IL+D Sbjct: 414 SMVVFQGGRPAKDQYRRFRIKTVEGADDPASMAEVVRRRLERLLAGDEKFSPAPDLILLD 473 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ V L + +AK E +F L PDS Sbjct: 474 GGKGQLSAVAEVLEGLGSGGRLPDIPVRALAKRE------EEVFEPGRPGPVVLAPDSAE 527 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L ++Q +RDE+H A HRK R + S L+ + GVGP R++ +L++ G Q AS Sbjct: 528 LRLLQRVRDEAHRFANAYHRKLRGRAMTASVLDDLPGVGPVRKRRILEHFGTPQAFLEAS 587 Query: 587 VEEIAKVPGISQGLAEKIFWSLK 609 +EE+ VPG+ +A +I L Sbjct: 588 LEELEAVPGLPGRVAREIHARLH 610 >UniRef50_Q24WC0 UvrABC system protein C n=16 Tax=Firmicutes RepID=UVRC_DESHY Length = 607 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 210/608 (34%), Positives = 330/608 (54%), Gaps = 36/608 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + +PGVY M DA G +IYVGKAK LK R+ SYF + + KT+ +++ I Sbjct: 20 LREKLSLLPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYFTGS-HNGKTQLMISLIADF 78 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + +T +E EALLLE N IK + P+YN+LLRDDK+YPFI ++ + HPR+ + R K G Sbjct: 79 ETIITDSEVEALLLECNLIKKHNPKYNILLRDDKTYPFITITDEAHPRILVTRQVKKGAG 138 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +Y+GP+PN A +E LL ++FP R+C + ++PCL Y +G+CLGPC + V +E Sbjct: 139 KYYGPYPNATAAKEAARLLNRLFPFRKCR----QIPNKPCLYYHLGQCLGPC-QVDVPKE 193 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV- 245 Y + + FL G +L L +M+ AS+NLEFE A RD ++ +++V EKQ + Sbjct: 194 AYDKIRKEAAAFLKGDQGAILKALEKKMKEASENLEFERAKEYRDLMEDLKKVGEKQNIT 253 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D DV+G A+ C+ + ++RQGK+L ++ P E E +F+ QFY Sbjct: 254 LNDFVDRDVVGYAYTQDQLCIQIFYLRQGKLLSRDNFIF--PYYEEPEEAFVSFLAQFYT 311 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + S LP EILL D ++L + +G + +++A NA T Sbjct: 312 ESSA---LPQEILLP--PLDISVLTKLF--------PMVVPQKGQKRDLVQMAMENAQTT 358 Query: 366 LTSKLSQQSTV----HQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L ++S + Q L + + L +P ++ +E FDIS+ G +VA + F P Sbjct: 359 LHEQISIEIRNLTECTQALAEIGNALGIPSLRTIESFDISNIAGTHSVAGMIQFLDGKPN 418 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA 480 R++YR++ I + DD A+M+QV+ RRY + ++ +PD+IL+DGGKGQ+ A Sbjct: 419 RSQYRKFKIQPMPNMDDTASMHQVIERRYARLQQENLPLPDLILVDGGKGQIHAALAALH 478 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L+ + + G+ K + + SL S +++ I++E H Sbjct: 479 SLNAA-----IPVAGMVKNDKHQTSA---LIDAMDRIHSLDRRSAGFRLLERIQNEVHRF 530 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HR++RAK S L+ I GVGPKRRQ LLK+ + +R A++EE+ + G+ Sbjct: 531 AITFHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEELQQ-SGLPAPA 589 Query: 601 AEKIFWSL 608 A ++ Sbjct: 590 AAAVYQHF 597 >UniRef50_A9WT69 UvrABC system protein C n=2 Tax=Actinobacteria (class) RepID=UVRC_RENSM Length = 655 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 209/649 (32%), Positives = 333/649 (51%), Gaps = 52/649 (8%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M++ + + + PGVYR D G VIYVGKAK+L+ RL+SYF KT A+ Sbjct: 1 MANPASYRPKTGEIPTDPGVYRFRDEHGRVIYVGKAKNLRSRLTSYFANPVTLLPKTFAM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V + T+ +E EAL LE+ +IK + PRYN+ RDDKSYP++ ++ G+ PR+ + Sbjct: 61 VHTATSVQWTIVGSELEALQLEYTWIKEFAPRYNLAFRDDKSYPYLAVTMGEEFPRVQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGPF A+RET+ L ++FP+R C S ++ RPCL I +C Sbjct: 121 RGERRKGTRYFGPFT-AGAIRETVDTLLRVFPVRTCSPSTFKRAQQSGRPCLLGYIDKCA 179 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS EE+ + F+ G+ + + L +M A L++E AAR+RD + A Sbjct: 180 VPCV-GRVSAEEHRTLADEFCAFMGGEAKRFIGTLEKQMAEAVAELDYERAARLRDDVIA 238 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +R+V E+ V D+ V D A V V +R G++ G R + + +E Sbjct: 239 LRKVFERNAVVLAEDTSADIFAVHQDELEAAVQVFNVRSGRIRGQRGWVVEKVEDLVPAE 298 Query: 295 VVETFVGQFY-LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 ++E + Q Y + + +P +IL+ ++ L + LS L G K+ ++ RGD+A Sbjct: 299 LIEHLLQQVYGDERADEDRIPRQILVPELPANVEQLTEWLSGLRGAKVEIKVPQRGDKAA 358 Query: 354 YLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEVK-RMECFDISHTMGEQT 408 ++ NA A+ S++ + L L L LP R+EC+DISH G Sbjct: 359 LMETVALNAEQAMKLHKSKRAGDLTQRSLALRELQDALDLPLPLLRIECYDISHVQGTNV 418 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK---------- 458 VAS VV + ++EYRR++ITG DD A+M V+ RR+ + + + Sbjct: 419 VASMVVVEDGIAKKSEYRRFSITGDAARDDTASMYDVITRRFRNYLQEQQDRAEALTRPV 478 Query: 459 ------------------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGA 500 P+++++DGG Q+A A+L ++ ++G+AK Sbjct: 479 EFEISDAAETAPKSKFAYPPNLVVVDGGPPQVAATSRALADLGIT----DVAVIGLAK-- 532 Query: 501 DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET 560 LE ++ + LP S L+++Q IRDE+H AI HR+KR K S L+ Sbjct: 533 ----RLEEVWLPEDDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKSMTASLLDG 588 Query: 561 IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + G+G +++ LLK+ G ++ L++A V +I++V GI LAE + +L+ Sbjct: 589 VPGLGESKQKALLKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSALE 637 >UniRef50_C1B4L2 UvrABC system protein C n=10 Tax=Actinomycetales RepID=UVRC_RHOOB Length = 743 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 228/700 (32%), Positives = 341/700 (48%), Gaps = 103/700 (14%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D + T+ PGVY+ D G VIYVGKAK L+ RL+SYF + +T + Sbjct: 1 MPDPSTYRPATGTIPVDPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSTLHPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+N+IK + PR+NV RDDK+YP + ++ + +PRL ++ Sbjct: 61 VTTAGSVEWTVVSTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVY 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL LL ++FP R C V++ RPCL I +C Sbjct: 121 RGPRRKGVRYFGPYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G VS E+ + VE FLSG+ D+++ QL +RM+ AS+ L+FE AAR+RD + A Sbjct: 181 APCV-GRVSAAEHRKIVEDFCDFLSGRTDKLVRQLEARMQQASEELDFETAARLRDDVGA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG----- 289 +RR EKQ V G D DV A D A V V +R G+V G R + + G Sbjct: 240 LRRALEKQAVVLGDGTDADVAAFATDELEAAVQVFHVRGGRVRGQRGWVVEKAGDVIDWA 299 Query: 290 -------TELSEVVETFVGQFYLQGSQM----------RTLPGEILLDFNLSDKTLLADS 332 ++L +VE F+ QFY + + + +P E+L+ D + + Sbjct: 300 AVDSAAGSDLPLLVEQFLTQFYGEQAALSGAADQEAGSSGVPREVLVPVLPPDAEQVQEW 359 Query: 333 LSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLK 388 LS L G + ++ RGD+ + + NA AL ++ ++ L + L Sbjct: 360 LSGLRGSAVRLRVPQRGDKKALAETVQRNAMEALQQHKLRRAGDFTSRSAALQGIQEALD 419 Query: 389 LPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---GDDYAAMNQ 444 L R+EC DISH G VAS VVF+ P +++YR Y I DD A++ + Sbjct: 420 LDSAPLRIECVDISHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGRSDDVASIAE 479 Query: 445 VLRRRYGKAIDD-------------------------------------SKIPDVILID- 466 V RRR+ + D + ID Sbjct: 480 VTRRRFLRHNRDVGVLRAEAAGADGDQASDTDGDQVSDTDGDQVSGGDGGDLAPEAAIDP 539 Query: 467 ------------------GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET 508 GG Q+A A V EL ++ ++G+AK LE Sbjct: 540 QTGRPRRFAYPPNLYVVDGGAPQVAAASAVLDELGIT----DVAVIGLAK------RLEE 589 Query: 509 LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKR 568 ++ E + LP S +L+++Q +RDE+H AI HR KR++ S+L+++ G+G R Sbjct: 590 VWVPGEEDPVILPRTSESLYLLQRVRDEAHRFAITFHRSKRSRRMTASALDSVRGLGETR 649 Query: 569 RQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 R+ L+ + G + L+ ASVEEI VPGI A+ + +L Sbjct: 650 RKALVTHFGSVAKLKQASVEEITAVPGIGTATAKAVLTAL 689 >UniRef50_B7K124 Excinuclease ABC, C subunit n=5 Tax=Cyanobacteria RepID=B7K124_CYAP8 Length = 617 Score = 613 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 209/620 (33%), Positives = 339/620 (54%), Gaps = 26/620 (4%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALV 60 ++ D + LK + S+PGVY M + GG ++Y+GK+K L+ R+ SYFR + S + +V Sbjct: 9 ANTDDLETRLKELPSEPGVYLMRNQGGEILYIGKSKKLRSRVRSYFRPSQPHSPRIGLMV 68 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 Q+ I+ VT TE EAL LE N IK +QP +NVLL+DDK YP++ ++ T+PR+ + R Sbjct: 69 QQVADIEFIVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSQTYPRIFITR 128 Query: 120 GAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 + + + Y+GP+ + + +R+TL L++++FP+RQ ++ + RPCL Y IG+C G Sbjct: 129 KRRLNNERDRYYGPYVDTHLLRQTLQLVKRVFPLRQRPKPLF--KDRPCLNYDIGKCPGV 186 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C +GL+S E+Y + VE V + G+ ++L +L +ME A+ L FE+AA IRDQ++A+ Sbjct: 187 C-QGLISPEDYHKIVEKVAMIFQGRTGELLEKLHQQMEKAATELRFEQAAMIRDQLKALN 245 Query: 238 RVTEKQFVSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEV 295 +T Q VS D D I +A D C+ + IR G+++G +F + Sbjct: 246 ALTVDQKVSLPDDTISRDAIALAKDTKHCCIQLFQIRAGRLVGRLGFFAD-AESATPGAI 304 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 ++ + Y Q + +P EIL+ + L + +LA LS+ G+K+ + R +A+ + Sbjct: 305 LQRVLEDHYWQ-ADGVEIPSEILVQYELPESEILAQWLSDRKGKKVTITVPQRQTKAQLI 363 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVV 414 +L NA L L LA +L LP++ R +E +DISH G VAS VV Sbjct: 364 ELVERNANYELERTQRTTERNLISLEDLAQILDLPDLPRRIEGYDISHIQGSNAVASQVV 423 Query: 415 FDANGPLRAEYRRYNIT----GITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGK 469 F P + YR Y I I DD+A+M +V+ RR+ + PD+I+IDGGK Sbjct: 424 FIDGIPAKQHYRHYKIKNPNVTIGHSDDFASMAEVIGRRFRHNQAKNIDYPDLIMIDGGK 483 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL+ + E ++ +AK E +F E + P + + Sbjct: 484 GQLSAVVAILEE---LNLLETLEVISLAKQR------EEIFLPGESYPLDTNAEQPGVQL 534 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 ++ +RDE+H A+ HR++R K S L+ I G+G +R++ LL Y + +R AS+E+ Sbjct: 535 LRRVRDEAHRFAVSFHRQQRLKKSRRSRLDEIPGLGFERQKQLLAYFHSIDYIREASIEQ 594 Query: 590 IAKVPGISQGLAEKIFWSLK 609 + +V GI + LA +I+ Sbjct: 595 LQQVSGIGKALATEIYRYFH 614 >UniRef50_C8QX27 Excinuclease ABC, C subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX27_9DELT Length = 610 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 228/604 (37%), Positives = 322/604 (53%), Gaps = 14/604 (2%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDV 68 + PGVY M DAGG V+YVGKA L+KRL SY R KT ++ ++ ++D Sbjct: 6 MIADAADAPGVYLMRDAGGQVLYVGKAVSLRKRLQSYSRIDPAGRSKTSVMLGKVAKVDT 65 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGE 127 +T TE EAL+LE IK ++PRYNV+LRDDKSYP + ++ + PRL M R Sbjct: 66 VLTRTEKEALILEAGLIKQHRPRYNVILRDDKSYPHLKVTVQEEWPRLLMTRRVSKDGAR 125 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGP+ + A+ ETL LL +FP+R+C+ + R CL +Q+GRC PC+ G ++ E Sbjct: 126 YFGPYASPAAMWETLRLLNSLFPLRRCKAKKFAPGQRACLNHQMGRCPAPCI-GAITPEA 184 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS- 246 Y Q+V V L G+ ++ +L RM+ A+ L FEEAA +RDQI+A+ + EKQ V Sbjct: 185 YRQRVSQVLAILEGRKRELTRELTGRMQEAAAGLNFEEAAALRDQIRALNQTLEKQVVLG 244 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 DLDV G+ G +LFIR+G + R +F P G + EV+ + +FY Sbjct: 245 RERVDLDVFGLVRRHGQVAAALLFIREGALADKREFFLAEPVGEDD-EVLAELLRRFYE- 302 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 R +P ILL L + LSE G + + RGD+ + +A NA L Sbjct: 303 -HPQRPIPRSILLPLPAEGAAALTEWLSEKRGGPVRLLVPRRGDKKALVTMAGDNAGQLL 361 Query: 367 TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 ++ QQ+ + L+L R+EC DIS+ G + V S V F + Y Sbjct: 362 AAREKQQAGWLSLGEEIRRALRLTSSPQRIECLDISNLGGREAVGSLVSFRQGEKESSRY 421 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 RR++I + DDYA M +VL R +A +PD++++DGGKGQL A+ V AEL + Sbjct: 422 RRFHIRNLATPDDYAMMREVLLRHLCRAAAAETLPDLLVLDGGKGQLGVAQAVLAELALP 481 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 + L+ +AK R+ E LF L SP L IRDE+H I H Sbjct: 482 GPE----LVSIAKD--REGSGERLFRPGRKNHLKLAQHSPVLLFFMKIRDEAHRFGITFH 535 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 R+ R + + S LE I GVGP R+Q LLK +G L G+ A+ E++A VPGI LA I Sbjct: 536 RRLRRQKQLVSRLEEIPGVGPGRKQALLKQLGSLAGVAAATPEQLAAVPGIGPELAAVIH 595 Query: 606 WSLK 609 L+ Sbjct: 596 RHLQ 599 >UniRef50_UPI00016BFB47 excinuclease ABC, C subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB47 Length = 602 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 199/606 (32%), Positives = 326/606 (53%), Gaps = 28/606 (4%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQIDVTVT 71 + + PGVY M D VIYVGKAK+LK R+S YF+ N S KT +V+ I + VT Sbjct: 3 NLPTTPGVYLMKDDLDEVIYVGKAKNLKNRVSQYFQKNKNHSAKTIKMVSNIASYEYIVT 62 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFG 130 +TE EAL+LE N IK Y P+YN+ L+DDK YP+I ++ PR+ + R +YFG Sbjct: 63 NTEVEALILECNLIKKYSPKYNIRLKDDKRYPYIKINIKSPFPRIQVVRKIIKDDAKYFG 122 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 P+ + ++ E + L+++++ +R + + ++R CL + IGRC GPC++ ++ EY Sbjct: 123 PYTDATSMWEMIELIKQLWQLRSXNKKLPKDIGKNRECLNFHIGRCSGPCIKN-ITAREY 181 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 + V+ + FLSG + +T+L RM AS + FE AA +RDQ+ A+ ++ +KQ V Sbjct: 182 HKIVDEIVEFLSGDYRKXVTELKQRMSEASDAMNFELAATLRDQLIAIAKLEQKQTVDTA 241 Query: 249 GDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D D++ A A + V F+R GK++G + + G E + F+ FY + Sbjct: 242 SKDNQDIVAYAEGTNDALIQVYFVRSGKLVGREHFILRDATGDEAKTLFRNFILXFYAEA 301 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P EI++ ++ LL + LS+ G ++ + + +G + L+LA+ NA Sbjct: 302 T---FVPREIVVQVIPAEVELLENYLSDKRGARVVITSPKKGTKFNLLELAKKNAELTFF 358 Query: 368 SK----LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLR 422 + + L+ L L L + R+E FDIS+T G V + VVF+ P + Sbjct: 359 EQGDQLKKKLENTKLALSQLQEALNLEKPIIRIEAFDISNTSGVYPVGAMVVFENGVPKK 418 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAEL 482 ++YR++ I + +DYAAM ++L RRY A ++ K+PD+I +DGGK Q+A AK V + Sbjct: 419 SDYRKFKIKTVRGQNDYAAMEEMLSRRYKNA-EEGKVPDMIFMDGGKSQVAAAKKVLVKY 477 Query: 483 DVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 ++ L+ G+ K + E LP S ++ I+DE H AI Sbjct: 478 NL-----EILVCGMVKDEKHRTFG----LLYEDNEIVLPKFSKLFKLVTRIQDEVHRFAI 528 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRK R + S L+ I+GVGP R+++LL + L+ AS+EE+ + I + +A+ Sbjct: 529 EYHRKLRGNIH--SVLDEIKGVGPVRKKILLLNFKSVYNLKEASLEELEQY--IPKDVAK 584 Query: 603 KIFWSL 608 ++ Sbjct: 585 NVYTYF 590 >UniRef50_A2RLW6 UvrABC system protein C n=11 Tax=Bacilli RepID=UVRC_LACLM Length = 669 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 211/660 (31%), Positives = 328/660 (49%), Gaps = 74/660 (11%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 KA L+ + PG Y D GTVIYVGKAK+LK R+ SYF + + KTE LV++I+ Sbjct: 3 QTIKAKLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIE 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 ++ V + E+L+LE N I+ Y+P+YN++L+DDK YPF+ ++ + +PRL + R + Sbjct: 62 DLEWIVVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITNEKYPRLLVVRKVQKD 121 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 YFGP+P+ A E LL +IFP R+C + + C + I +CL P V V Sbjct: 122 GATYFGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCP-VVNHVD 176 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 + Y + V+ FL+G D +++ +L +M +AS N+EFE+AA RD I+A+ + KQ Sbjct: 177 PQVYKDMTQEVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQR 236 Query: 245 VSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V N D DV G D G CV V F+RQGK++ P + E T++GQF Sbjct: 237 VMNQDLKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMF--PYYNDAEEDFLTYIGQF 294 Query: 304 YLQGSQMRTLPGEILLDFNLS--------------------------------------- 324 Y + M +P EI + ++ Sbjct: 295 YQDNNHM--MPREIFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSD 352 Query: 325 -----------DKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ 373 DK L ++ K + RG++ + + +A NA T L K Sbjct: 353 QKDVEQSIVKLDKELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVA 412 Query: 374 STV----HQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 + + L +L +P+ R+E FD S+ MG V++ VVF P + +YR+Y Sbjct: 413 ERDILKTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYK 472 Query: 430 ITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDK 488 I + DDYA+M +V+ RRY + +++ +PD+I +DGG GQ+ AK V EL ++ Sbjct: 473 IKTVVGADDYASMREVMTRRYSRALKEETALPDLIAMDGGAGQVNIAKEVLRELGLA--- 529 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 + G+ K + L F E L S ++ I+DE H AI HR+ Sbjct: 530 --IPVAGMQKNDKHQTS--ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITFHRQL 585 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 R K +S L+ I G+GPKR+Q LL L+ + A+V+E+A+ G+ +AE++ +L Sbjct: 586 RGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAE-AGVPYEVAERVKNTL 644 >UniRef50_D1BHL1 Excinuclease ABC subunit C n=16 Tax=Actinomycetales RepID=D1BHL1_SANKS Length = 703 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 219/662 (33%), Positives = 332/662 (50%), Gaps = 64/662 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + + + PGVYR D G VIYVGKAK+L+ RLSSYF+ +T+ + Sbjct: 1 MADPATYRPAPGEIPTTPGVYRFRDDHGRVIYVGKAKNLRARLSSYFQDLAALHPRTQTM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+++IK Y PR+NV RDDKSYP++ ++ G++ PR + Sbjct: 61 VTTASSVEWTVVGTEVEALALEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGESVPRAQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG+K YFGPF + +A+RETL LL ++FPIR C VY+ RPCL I +C Sbjct: 121 RGSKRVGTRYFGPFAHAWAIRETLDLLLRVFPIRTCSAGVYKRAQQSGRPCLLGYIDKCA 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCVE +S++ + + F++G + + +L M A+QNL++E AAR+RD I A Sbjct: 181 APCVE-RISKDAHRALADDFCAFMAGDTAKFMRRLRDEMSMAAQNLDYERAARLRDDIGA 239 Query: 236 VRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + R EK V D D+ + D A V V +R G++ G R + + +E Sbjct: 240 LERAMEKNAVVLQDGTDADIFALTGDELEAAVQVFHVRGGRIRGQRGWVVEKVEDLTDAE 299 Query: 295 VVETFVGQFY-----------LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINV 343 +VE + Q Y +P E+L+ + + LS L G ++++ Sbjct: 300 LVEHLLQQVYGTADEAAGGDAQAARDSGLVPREVLVPVLPAHLEQMTTWLSGLRGARVDI 359 Query: 344 QTKPRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEVK-RMECF 398 + RGD+ NA AL +++ + L + L L R+EC+ Sbjct: 360 RVPQRGDKRELAATVLKNAEHALALHRTRRAGDLTNRSLALREIQEALDLDSAPLRIECY 419 Query: 399 DISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---GDDYAAMNQVLRRRYGKAID 455 DIS TMG AS VVF+ ++EYR + + G DD AAM +V+ RR+ + + Sbjct: 420 DISTTMGTHQAASMVVFEDGLARKSEYRTFGVKGPDGDGARDDTAAMYEVITRRFRRYLA 479 Query: 456 DSK----------------------------IPDVILIDGGKGQLAQAKNVFAELDVSWD 487 + P+++++DGG Q+A A A+L + Sbjct: 480 ERSDSSDIELETFGGEVDAETPATDRKRFAYPPNLVVVDGGPPQVAAAAKALADLGI--- 536 Query: 488 KNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 547 + L G+AK LE ++ E L S L+++Q +RDE+H AI HRK Sbjct: 537 -DDVALCGLAK------RLEEVWVPGEEYPVILQRSSEGLYLLQRVRDEAHRFAITAHRK 589 Query: 548 KRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 KR K S L+++ G+GP R+ LL++ G L+ LR AS EEIA V G+ Q AE + + Sbjct: 590 KRGKGMTVSELDSVPGLGPARKGALLRHFGSLKRLRAASAEEIATVQGMGQRTAEAVVAA 649 Query: 608 LK 609 L Sbjct: 650 LH 651 >UniRef50_A8ZVJ2 Excinuclease ABC, C subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVJ2_DESOH Length = 626 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 230/609 (37%), Positives = 353/609 (57%), Gaps = 13/609 (2%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQ 64 L ++PGVY M D G +IYVGKA +LKKRL+SYF + KT L+ ++ Sbjct: 17 RLAEKLAGAPARPGVYLMKDGAGAIIYVGKAFNLKKRLASYFVKKERLDLKTGLLMERVV 76 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 D VT TE EAL+LE + I+ ++PRYNVLL+DDK YP + + +P L + R + Sbjct: 77 DFDTIVTATENEALILEASLIRRHKPRYNVLLKDDKRYPSLRIDPRQPYPALEIVRKTRP 136 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 YFGPF + AVRETL ++ K F +R+C V++ RSRPC+ +Q+G CLGPC V Sbjct: 137 DGAVYFGPFSSARAVRETLKVVDKTFRLRKCRGKVFKKRSRPCINFQMGLCLGPCFY-DV 195 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 E +YA+ V V LFL G+ ++++ L RM+ A++N EFE+AA +RD++ A+ +V EKQ Sbjct: 196 PENDYAEAVREVSLFLKGRATELVSDLRVRMKGAAENQEFEKAALLRDRLFAIEKVIEKQ 255 Query: 244 FVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V D DVI VA + + V +L +R+G + G+R + + + +++ + TF+ Q Sbjct: 256 VVVTPDFADRDVIAVAEEGRRSVVALLQVRKGVLSGTRFFHFE-ELLSSVADSLATFMVQ 314 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y + +P EIL D +AD L +LA +++N+ RG++ +K+AR NA Sbjct: 315 YYTE---PGRVPDEILTDGTPFGGPWIADHLRDLAEKRVNMAVPRRGEKFLLIKMARENA 371 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPL 421 L + + L LA L L +V R+ C D SH G TVA+ VVF P Sbjct: 372 QNELAAAALGARKHQKTLERLARKLGLSDVPARIACVDNSHLAGTGTVAAVVVFADGVPD 431 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAE 481 + YRRY + G+ DDYAAM QVL RR+ DD+ D++L+DGG+GQL A V E Sbjct: 432 PSAYRRYRLAGVPAADDYAAMKQVLVRRFAAGADDAGPVDLLLVDGGRGQLNIAAAVLQE 491 Query: 482 LDVSWDKNHPLLLGVAKGAD-RKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 ++ + ++K + ++ + ++ +L P PAL +++ IRDE+H Sbjct: 492 AGLAGKMG---VAAISKKDEAKEETADKVYVPGRRNPVNLGPADPALFLLEEIRDEAHRF 548 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI RK+R ++ S+L+ I G+GP+R++MLL G ++G+R ASVE++A +PGI+ + Sbjct: 549 AIDYQRKERKRISLRSALDDIPGIGPQRKRMLLDRFGTVEGVRAASVEDLAALPGITGSM 608 Query: 601 AEKIFWSLK 609 A +I L+ Sbjct: 609 AGQIREHLR 617 >UniRef50_A1AWP2 Excinuclease ABC subunit C n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AWP2_RUTMC Length = 594 Score = 610 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 281/607 (46%), Positives = 379/607 (62%), Gaps = 20/607 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + LK +T+ PGVY+M+D VIYVGKAK+LK R+SSYF K LVA I+ Sbjct: 3 IQEKLKNLTTNPGVYQMFDKQDQVIYVGKAKNLKNRVSSYFVKTHEQNKARVLVANIKDF 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 V VT TET+ALLLE IK + PRYN+LL+D KSYP+IF+S D HPR+ +RG K Sbjct: 63 KVIVTATETQALLLESELIKQHMPRYNILLKDSKSYPYIFISHDKHPRVGFYRGKKCQSA 122 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +YFGP+P+ + VR++L+LL+KIF +RQC NS YR+RSRPCL+YQIG C PCV +S+E Sbjct: 123 QYFGPYPSAHVVRDSLSLLKKIFKVRQCTNSTYRSRSRPCLEYQIGLCSAPCV-NKISDE 181 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 Y V + LFLSGK + L ++ +M+ AS+NLEFE AAR+RDQ+ +R + E+ S Sbjct: 182 NYQSDVLMMSLFLSGKGRETLERVSKKMQLASKNLEFELAARLRDQLIDLRTIQEQHT-S 240 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQ 306 ++ +DLDV+ +A G+ V VLFIR GK +G PK ++ +V+ F+ +YL Sbjct: 241 SSSNDLDVVSIAQQDGVNGVEVLFIRSGKQIGQVFILPKNSNNQDIKQVLSAFLPLYYLG 300 Query: 307 GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATAL 366 + P +IL+ LSDK ++A +L+ ++ P D+ YL +A A L Sbjct: 301 KNT----PKQILISHKLSDKKIIASALNT------HIIDTPNKDKKHYLNIANLTAKENL 350 Query: 367 TSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEY 425 L + L L +L L ++ +ECFDISH MGE TVASCVVF+ P ++Y Sbjct: 351 NQNLLSKFRKKSTLVHLQVILGLGKLPNYIECFDISHMMGEATVASCVVFEKGVPKASQY 410 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVFAELDV 484 R+++I I PGDDYAAMNQV+ RRY K + D +PD+I IDGG GQ QA V + V Sbjct: 411 RQFDIKNIIPGDDYAAMNQVVYRRYSKLLKDKKPLPDIIFIDGGLGQFNQAIMVMNSIGV 470 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEG--EGFSLPPDSPALHVIQHIRDESHDHAI 542 + L+G+AKG +RKAGLETL + +L P PAL ++ HIR+ESH AI Sbjct: 471 ----DDVQLVGIAKGENRKAGLETLITIKDDNVNKINLLPYDPALMLVNHIRNESHRFAI 526 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 HRKKRA + TS LE+I+GVG RR LL Y GGLQ ++ AS+ EI KV GI+ LA Sbjct: 527 KNHRKKRASRRTTSILESIKGVGKLRRMALLNYFGGLQEIKKASIHEIQKVSGINLVLAT 586 Query: 603 KIFWSLK 609 KI +K Sbjct: 587 KIVKKIK 593 >UniRef50_B2A711 Excinuclease ABC, C subunit n=2 Tax=Firmicutes RepID=B2A711_NATTJ Length = 685 Score = 610 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 222/668 (33%), Positives = 357/668 (53%), Gaps = 77/668 (11%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 + D + L + +PGVY M G VIYVGKA +LK R+ SYF S + K + + +I Sbjct: 3 REDLQEKLANLPEKPGVYLMKSKQGRVIYVGKAINLKNRVRSYFNSGNKAVKVQVMTPKI 62 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAK 122 I+ VT +E EAL+LE+N IK Y+P+YNV LRDDK+YP++ + + + +PRL + R Sbjct: 63 SDIETIVTDSELEALILENNLIKKYRPKYNVSLRDDKNYPYLKITTEEDYPRLIIARRM- 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVEG 181 G YFGP+PN AVRET+ LL+K+FP+R C+ +N+ RPCL Y I RCL PC E Sbjct: 122 GKHGRYFGPYPNAGAVRETIKLLRKLFPVRTCKGETPKNQGKRPCLNYFINRCLAPCNE- 180 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 VS +EY + ++ + L GK++++L +L +M A++ +EFE+AA R+Q A+ ++ + Sbjct: 181 KVSRDEYREMIQDIISVLEGKEEELLNELERKMNLAAEEMEFEKAAEYRNQKAALEKIRQ 240 Query: 242 KQFVSNT-GDDLDVIGVAFDA------------GMACVHVLFIRQGKVLGSRSYFPKVPG 288 KQ + + +D D+I + F+ ACV + +IR GK++G ++ Sbjct: 241 KQKIVSERREDYDIIALGFEEKIDDTSDTDDSTEEACVQIFYIRGGKLMGRNNFRVSTGA 300 Query: 289 GTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPR 348 +++ +F+ Q+Y Q +P +IL+ L++K L+ L+E K+ V+ R Sbjct: 301 LEGAEDMLTSFIKQYYAQALH---VPKQILVSHPLTEKELIESWLAEKREGKVEVKVPQR 357 Query: 349 GDRARYLKLARTNAATALTSKLSQQSTVHQ----RLTALASVLKLPEVK-RMECFDISHT 403 G++ + + +A NA L + + + L LA L L E+ R+E +DISHT Sbjct: 358 GEKYQLMNMAIKNAELELKQQELESEKERKMTEGALKELALKLSLSEIPFRVEGYDISHT 417 Query: 404 MGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----- 458 GE+TVAS VVF+ + +YR++ I DD+ AM +VLRRR+ +A + + Sbjct: 418 QGEETVASMVVFEGGKSKKKDYRKFRIRTTAGPDDFKAMEEVLRRRFHRAKKEEQEYLMA 477 Query: 459 -------------------------------------IPDVILIDGGKGQLAQAKNVFAE 481 +PD+I+IDGGKGQL+ A V E Sbjct: 478 AETKQDSEYDAREGNKDNISQYNSGTEYSEYDFKFAVLPDLIVIDGGKGQLSSAVKVMEE 537 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 + S ++ +AK E +F P +S AL ++Q IRDE+H A Sbjct: 538 VGYS----QIPVISLAKRE------EEIFVPERSTSLKFPSNSEALKLLQRIRDEAHRFA 587 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 + HRK R K TS L+ + +G +R++ L ++ L ++ AS++E+A +P +++ A Sbjct: 588 VSYHRKSRGKATLTSLLDEVPEIGSRRKKELFEHYSSLNEIKQASIDELANLPSMNKKAA 647 Query: 602 EKIFWSLK 609 + + LK Sbjct: 648 KNLVTYLK 655 >UniRef50_Q6MKS2 UvrABC system protein C n=1 Tax=Bdellovibrio bacteriovorus RepID=UVRC_BDEBA Length = 630 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 212/622 (34%), Positives = 340/622 (54%), Gaps = 30/622 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQ 64 + + +K +Q GVY M + +IY+GKAK+L+ R+ SYF + S KT LV+ I Sbjct: 8 EVRDKVKEFPTQSGVYLMKNTADKIIYIGKAKNLRNRVRSYFNDSKDHSPKTRLLVSNIC 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 +++ +T TE EA LLE + IK ++P+YN+ LRDDK+YP+I S GD PRL + R K Sbjct: 68 EVEYILTKTEVEAFLLEASLIKKHRPKYNIRLRDDKAYPYIRFSWGDQAPRLYLARKVKK 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 YFGP+ +G AV T+ L + F IR C ++V+++R+RPC+ YQIGRC PCV+ + Sbjct: 128 DGSLYFGPYTSGLAVHGTIKFLNRTFKIRDCTDAVFKSRTRPCMTYQIGRCTAPCVK-YI 186 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + E+Y +VE +LFL G++ +V+ + +M A+ +FE AAR+RD I+A++ + +KQ Sbjct: 187 TMEDYRNEVEGAKLFLKGQNKKVIKSMTEKMMGAADEEKFEVAARLRDSIEAIKAILQKQ 246 Query: 244 FVSN--TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV----PGGTELSEVVE 297 V N + D D +G D + + IR G+V+G+R ++ + E + Sbjct: 247 AVINDTSEKDQDALGYYGDERGCLIETVHIRAGRVIGTRPHYLPHFDPNDAVEDPREWLV 306 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSD--KTLLADSLSELAGRKINVQTKPRGDRARYL 355 F+ Q+Y +P E+LL ++ + L+ + L E +G K V+ + Sbjct: 307 DFLNQYYED----NFIPDEVLLPLDIGNDLTKLMEEVLKERSGSKTTVRFATDERGRNLV 362 Query: 356 KLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVV 414 +A NA + +S+ + L + LP +R+EC+DIS G +TVAS VV Sbjct: 363 DMAHENAKSHFLKYVSKSEEKLRGLEEIKERFNLPERPRRIECYDISTFQGAETVASQVV 422 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQ 474 F+ P + YRRY I + +D+A+M +VL RR+ + P +I+IDGGKGQL+Q Sbjct: 423 FEDGVPAKEHYRRYKIKTVQGINDFASMYEVLSRRFKHT--EYDDPQLIVIDGGKGQLSQ 480 Query: 475 AKNVFAELDVSWDKNHPLLLGVAK--------GADRKAGLETLFFEPEGEGFSLPPDSPA 526 A + E+ + ++G+AK + ++ E F ++ A Sbjct: 481 AMKILEEIG----RKDIPVVGLAKARTESDFQKQEVESTEERFFLPGRSNPVIFKHNAEA 536 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L+++ IRDE+H AI HRK R S L+ + G+G KR+++LL + ++ A Sbjct: 537 LYILSGIRDEAHRFAITYHRKLREGTSLESELDYVVGLGEKRKKVLLTQFNSIDEIKMAD 596 Query: 587 VEEIAKVPGISQGLAEKIFWSL 608 EEIAK+ G ++ LAE+I L Sbjct: 597 PEEIAKLKGFNRVLAERILLQL 618 >UniRef50_Q1D921 UvrABC system protein C n=2 Tax=Cystobacterineae RepID=UVRC_MYXXD Length = 646 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 333/618 (53%), Gaps = 23/618 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI- 63 L + ++PGVY M D G VIYVGKA +L+ R+ SYF +R +L+ Q+ Sbjct: 3 AKLLEKLDALPTEPGVYLMKDRRGQVIYVGKAINLRSRVRSYFNRTGDTRVFVSLLDQLL 62 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAK 122 ++ + E EALLLE+ IK ++PR+NVLL+DDK + + L +PRL + R + Sbjct: 63 GDLETVLVSNEKEALLLENELIKKHRPRFNVLLKDDKQFISLRLDRTQPYPRLEVVRKYE 122 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 YFGP+ + A+RETL ++ + F +R C + V NR RPCL +QIGRC PCV Sbjct: 123 RDGARYFGPYSSAGAIRETLRVVNRFFRLRTCTDHVLANRKRPCLLHQIGRCPAPCVY-P 181 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V +E+Y + V+ V +FL GK +++ L RM+ A+Q L+FEEAARIRDQ+ A+ R E+ Sbjct: 182 VPQEDYHRSVDEVVMFLEGKAGELVEGLRLRMKRAAQELKFEEAARIRDQLNAIERSLER 241 Query: 243 QFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V+ T D DV + +VL++RQG++ G +++ P E++ +FV Sbjct: 242 QKVATTDFKDQDVFAFHREGDRILFYVLWVRQGRLNGGQAF-PFGSQEFPDEELIASFVN 300 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 +Y QGS + +L L L+E G ++ V RG++ +K+A N Sbjct: 301 LYYDQGSFVPE--EVLLPLELEDGTGGLEALLTERKGERVRVLVPKRGEKLDLVKMAAKN 358 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 A A + + L+ L L L RMECFDISH G VAS V Sbjct: 359 AEQAFVERRRTKDETDTVLSRLQQRLGLRNFPCRMECFDISHFQGSAIVASQVAVTDGDA 418 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 ++ YR+Y I + DD+A+M +V+ RR K ++D+ +PD+++IDGGKGQLA A Sbjct: 419 DKSRYRKYKIKTLEKQDDFASMYEVISRRLKKGLEDNDLPDLLVIDGGKGQLASAHAAMK 478 Query: 481 ELDVSWDKNHPLLLGVAK---------GADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 ++ V ++G+AK A+ E +F + L +S + ++ Sbjct: 479 DVGV----ESVDVVGLAKSRDLEVFDRDAESARSPERIFVVGRKDPIVLSQNSAEMFMLT 534 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H AI ++ K + S+LE I GVG RR+ LL++ G L+ + +AS+EE+A Sbjct: 535 RMRDEAHRFAITFQKQVLRKSRVRSALEDIPGVGETRRKQLLRHFGSLKRVGDASIEELA 594 Query: 592 KVPGISQGLAEKIFWSLK 609 +V + +AE++ L Sbjct: 595 EV--VGPAMAERVHAGLH 610 >UniRef50_B2JFL2 Excinuclease ABC, C subunit n=2 Tax=Burkholderia RepID=B2JFL2_BURP8 Length = 740 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 276/712 (38%), Positives = 388/712 (54%), Gaps = 108/712 (15%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 ++++FD K L+ + PGVYR YD G V+YVGKA+DLKKR+SSYF L S + +V Sbjct: 34 VAEEFDPKKVLRQLPHMPGVYRYYDEQGAVLYVGKARDLKKRVSSYFTKTLLSPRIAMMV 93 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 ++I +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RG Sbjct: 94 SRIAKIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHQFPRMAYYRG 153 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV Sbjct: 154 SVDKKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCV- 212 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G V+EE+YA+ V FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ V Sbjct: 213 GAVTEEDYARDVSNASRFLLGRQSEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVL 272 Query: 241 EKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPG--------GTE 291 +Q + D+D++ V G CV++ +R G+ LG ++YFP G E Sbjct: 273 HQQAIEVGGDSDVDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTADEGGIE 332 Query: 292 LSEVVETF-----------VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS------ 334 +V+ + +G + E + + D+ Sbjct: 333 DGDVLLSAETASVIDVEAELGDESEDALSIDEAASEESAPEESDSEDVAEDADKKPRRAH 392 Query: 335 ----------------------------------------ELAGRKINVQTKPRGDRARY 354 E AG K+ + +P+G + + Sbjct: 393 GIESEVLEAFIAQHYLGNRVPPVLVVSHAPASRELVDLLIEQAGHKVTLLRQPQGQKRAW 452 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQTVA 410 L +A NA AL LS+Q + R +LA+ L + R+ECFDISHTMGE T A Sbjct: 453 LAMAEQNAKIALARLLSEQGSQQSRTRSLANTLSMECEDLAHLRIECFDISHTMGEATQA 512 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI---------------- 454 SCVVF + +EYRRYNITGITPGDDYAAM QVL RRY K + Sbjct: 513 SCVVFHHHKMQSSEYRRYNITGITPGDDYAAMRQVLTRRYEKMVAQAAANANDEAAELQP 572 Query: 455 -----------------DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 ++P+++LIDGGKGQ+ A+ VF EL + L+GVA Sbjct: 573 EAAADPAAAPEGAEPVAAGGQLPNIVLIDGGKGQVEIARQVFNELGLDLGM----LVGVA 628 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 KG RK GLETL F L +S AL ++ IRDE+H AI G R KR K + TS Sbjct: 629 KGEGRKVGLETLVFADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSR 688 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 LE +EGVG KRRQ LL GGL+G+ AS++++A V GIS+ LAE+I+ L Sbjct: 689 LEELEGVGAKRRQRLLARFGGLRGVVAASIDDLASVEGISRALAEQIYRQLH 740 >UniRef50_Q3M542 UvrABC system protein C n=11 Tax=Cyanobacteria RepID=UVRC_ANAVT Length = 627 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 208/628 (33%), Positives = 341/628 (54%), Gaps = 34/628 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEAL 59 + D +A L + +PGVY M D +IY+GK++ L+ R+ SYFR + + + Sbjct: 11 VKDPERLEARLSEIPPEPGVYFMRDGSDRIIYIGKSRKLRSRVRSYFREGYNKTERIATM 70 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 + +I+ VT TE EAL LE N IK +QP +NVLL+DDK YP++ ++ + +PR+ + Sbjct: 71 AKLVTEIEFIVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFIT 130 Query: 119 RGAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 R + K +Y+GP+ + +RE L + ++IF +RQ ++ + RPCL Y +GRC G Sbjct: 131 RKRQLGKEKDKYYGPYTDSGLLREILRISKRIFALRQRPQPLF--KDRPCLNYDLGRCPG 188 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 C + L+S EEY + V+ V + G+ +++ L +ME A++ L FE AARIRDQI + Sbjct: 189 VC-QQLISPEEYRKTVQKVAMVFQGRTQELIDILSEQMEKAAEALNFEVAARIRDQIAGL 247 Query: 237 RRVTEKQFVSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + +T +Q VS D D I +A DA AC+ + IR G+++G ++ + E Sbjct: 248 KSLTAEQKVSLPDDTVSRDAIALAADAQHACIQLFQIRAGQLVGRLAFVAE--SHAEPGA 305 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 +++ + + Y Q ++ +P EIL+ L D +LAD L++ GRK+ + T R +A Sbjct: 306 ILQRVLEEHY-QTAESVEIPAEILVQHELPDAEILADVLTQRKGRKVTIFTPQRQVKAEL 364 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 +++ NA L HQ LA++L LP++ R+E +DISH G VAS V Sbjct: 365 IEMVERNAQYELQRMQKLGDRNHQATQDLAAILDLPDLPHRIEGYDISHIQGSNAVASQV 424 Query: 414 VFDANGPLRAEYRRYNIT----GITPGDDYAAMNQVLRRRYGKAIDDS--------KIPD 461 VF P + YR Y I I DD+A++ +V++RR+ K +D PD Sbjct: 425 VFIDGLPAKQNYRHYKIKNPTVTIGHSDDFASLAEVIQRRFRKYAEDPQLSRVGNPDWPD 484 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +I+IDGGKGQL+ V E+++ ++ +AK E +F E + Sbjct: 485 LIMIDGGKGQLSSVVAVLQEMNL---LEDLRVISLAK------RREEIFLPGESQPLKTD 535 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 + P + +++ +RDE+H A+ HR++R+ S L+ I G+G R++ LL + + Sbjct: 536 AEQPGVQLLRRLRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLAHFRSVDY 595 Query: 582 LRNASVEEIAKVPGISQGLAEKIFWSLK 609 +R A+ +IA+VPGI LA+ I+ Sbjct: 596 IRQATPAQIAEVPGIGPHLAQAIYDYFH 623 >UniRef50_C0QET6 UvrABC system protein C n=2 Tax=Desulfobacteraceae RepID=UVRC_DESAH Length = 606 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 221/605 (36%), Positives = 344/605 (56%), Gaps = 15/605 (2%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 ++ PGVY M D GT+IYVGKA +LKKRL+SYF R KT L+ ++ D Sbjct: 7 ERYQSAPQNPGVYLMKDKRGTIIYVGKALNLKKRLASYFARETGHDMKTGVLLKKVVDFD 66 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKG 126 + VT TE EAL+LE IK + PRYNV+L+D KSYP + + + P L + R Sbjct: 67 LIVTATEHEALILESTLIKKHSPRYNVILKDGKSYPCLRIDTSKPFPALEVVRKIGDDNA 126 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+ + +VR T+ + KIF +R+C + + NR+RPCL YQI CLG C VS + Sbjct: 127 VYFGPYSSVQSVRSTIKQVNKIFKLRKCRDVQFANRTRPCLNYQINACLGACC-NRVSRQ 185 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 EYA+ V V LFL G+ ++ +L M+T + FE AA+IRD I A++ E+Q V Sbjct: 186 EYARVVGDVILFLKGRAPDLINRLKFEMQTEADLEHFERAAQIRDTILAIQTTLERQVVV 245 Query: 247 NTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 +T D DVI A + A V +LF+R G ++GSR+Y + + E+++ FV +Y Sbjct: 246 STDRTDRDVIACAINGEKAVVTILFVRSGNLVGSRNYPFDTGL-SGVPEILDAFVRHYYE 304 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +PG+IL+ + + L+ D L E G+++++ RGD+ R +++A NA Sbjct: 305 RSL---FIPGQILIAEKIENHGLVQDLLIEKRGKRVSLVVPERGDKRRLVEMALVNAQKE 361 Query: 366 LTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 L LS Q+ + LTAL ++L + +R+ECFD S+ G V+S VVF ++E Sbjct: 362 LEKNLSIQNEAWETLTALQTILGMSVYPRRIECFDNSNMAGTDPVSSMVVFVDGLACKSE 421 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YR++ I DDYA M +VL RR ++ +PD++++DGGKGQL+ A V L + Sbjct: 422 YRKFIIRDAKENDDYACMTEVLTRRLSST--EAPLPDLLVVDGGKGQLSMAVAVLKSLGL 479 Query: 485 SWDKNHPLLLGVAKGADRKAG-LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 +N + G+AK + + ++ + AL+++Q +RDE+H AI Sbjct: 480 ---ENRFQVAGLAKKDAKLGEVYDKIYLPGRANPVNTRGALKALYLVQRLRDEAHRFAIT 536 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 RK+R+K TS L+ + G+G KR+Q+L+ G+ + A+VEE+A +PG++ A++ Sbjct: 537 FQRKRRSKRAGTSVLDAVPGIGKKRKQVLMTTYKGISRMGQATVEELASLPGMTLAAAQQ 596 Query: 604 IFWSL 608 + +L Sbjct: 597 VKSAL 601 >UniRef50_D1R706 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R706_9CHLA Length = 614 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 219/614 (35%), Positives = 339/614 (55%), Gaps = 19/614 (3%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQ 62 FD K L + PGVY M + G ++YVGKAK+L+ R+ YF S LV Q Sbjct: 2 PFDPKT-LSLYPNHPGVYLMKNRTGMILYVGKAKNLRTRIRQYFMTSGDGREMIPFLVPQ 60 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HR 119 I+ I+ +E EALLLE + IK ++P+YN LL+DDKSY + ++ + P L++ +R Sbjct: 61 IESIETISVTSEKEALLLESHLIKKHKPKYNALLKDDKSYVALKINVKNPWPMLSLERYR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 G A G YFGP+ + A R TL LL ++FP+RQC ++ + R+RPC+ Y + RC+ PCV Sbjct: 121 GKPKADGVYFGPYTHAGAARRTLDLLHRLFPLRQCSDAEFARRTRPCILYDMKRCIAPCV 180 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 + ++EEY QV+ FL G++ ++L ++ MET ++NLEFE+A + D I+ + + Sbjct: 181 Q-KCTKEEYQIQVDRTIKFLRGQNKEILQEMYQEMETYAENLEFEKAGKSLDTIRYIEKT 239 Query: 240 TEKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 E Q+V + +G D D +G+ + L R+G++ S+S+ + +E++ + Sbjct: 240 IEPQYVDSVSGKDADALGIYRQGEDVMLCQLLFREGRLTSSQSFNFTKIAD-DDAELLTS 298 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 FV Q Y LP EILL + D+ L + LSE RK+ V RG ++ + +A Sbjct: 299 FVLQHYQNRD---FLPHEILLPIEIEDEVALTELLSENRARKVQVYAPKRGGKSVLIDMA 355 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDA 417 + NA + + ++Q+ L A+ L R+EC D SH G + V+S +VF Sbjct: 356 QANAEASFKKEKNEQTLRENILLAIQEQFHLTNYPKRIECIDNSHIAGTEHVSSVIVFTD 415 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 YR Y + P DDY AM +VL RRYGKA D++ +PD+++IDGGKG L A Sbjct: 416 GKKDTRNYRTYTLKQAGPSDDYGAMREVLTRRYGKAKDENDLPDLLIIDGGKGHLNIALK 475 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAG---LETLFFEPEGEGFSLPPDSPALHVIQHIR 534 V ELD+ ++G+AK R LE +F + L SP L ++Q IR Sbjct: 476 VLVELDI----ISVNVIGIAKEQGRHDRGLTLEQVFLPNVKDPLILKVTSPILFILQQIR 531 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE+H I HRK+ K S L+ + G+GP +++ LLK+ G ++ ++ AS EE+ K+ Sbjct: 532 DEAHRFVIKFHRKRMQKRTIKSILDDVPGIGPAKKKALLKHFGSIKKIKEASDEELKKMK 591 Query: 595 GISQGLAEKIFWSL 608 GIS+G ++ Sbjct: 592 GISEGNIVQLRQFF 605 >UniRef50_C7MCN8 Excinuclease ABC subunit C n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCN8_BRAFD Length = 650 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 215/620 (34%), Positives = 335/620 (54%), Gaps = 41/620 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + T+ ++PGVYR D G VIYVGKAK+L++RL +YF+ ++ +T + Sbjct: 1 MADPATYRPATGTIPTRPGVYRFRDEHGRVIYVGKAKNLRQRLVNYFQDLSVLHERTRRM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+ +IK + PR+NV RDDKSYP++ L+ G+ PR+ + Sbjct: 61 VTTAASVEWTVVGTEVEALTLEYTWIKEFDPRFNVKFRDDKSYPYLVLTMGEKVPRVHIT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 R + FGP+P A+RETL L+ ++FPIR C VYR RPCL IG+C Sbjct: 121 RRPRAKGDRTFGPYPQVGAIRETLDLMLRVFPIRSCTAGVYRRAERSGRPCLLGFIGKCA 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G +SEEE+ + E F++G + ++ RM+ A+ +++E AA +RD +QA Sbjct: 181 APCV-GDISEEEHRRLAEQFADFMAGNTSKYTRRIEQRMKAAAAAMDYETAAGLRDDLQA 239 Query: 236 VRRVTEK-QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + +V EK V + D D+IG+A D A V V +R G++ G R + ++ + + Sbjct: 240 LEKVMEKNSVVLSDATDADLIGLAQDELEASVQVFHVRGGRIRGQRGWTAEILDDSSGPD 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 ++E + Y +G P E+L+ +++ + + GR ++++ RG++ Sbjct: 300 LIERAMTTLYAEGEA----PREVLVPILPTNREQVLQMM----GRTVDLRVPQRGEKKDL 351 Query: 355 LKLARTNAATALTSKLSQQS----TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 L+ NA AL +++ + L L L+L E R+ECFDISH+ G V Sbjct: 352 LRTVGENATEALRLHRLKRTGDLTARTKALEDLGEALELAEPPLRIECFDISHSHGTNVV 411 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----------- 458 S VVF+ P ++EYRRY+++G DD A+M V+ RR +D + Sbjct: 412 GSQVVFEDGLPKKSEYRRYSVSGAAARDDTASMYDVISRRLKHHLDPPEQSEEDRRRFAY 471 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 P +IL+DGG Q+A A+ F +L ++ L G+AK LE ++ + Sbjct: 472 PPSLILVDGGPPQVAAAQRAFDDLGIT----DIALAGIAK------RLEEIWLPGDDYPV 521 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 LP S AL ++Q +RDE+H AI HR KR + S+L+ I G+GP RR+ LL Sbjct: 522 ILPRTSEALFLVQRLRDEAHRFAITYHRSKRGRAMQASALDGIPGLGPARRRALLDRFVT 581 Query: 579 LQGLRNASVEEIAKVPGISQ 598 + +R AS EE+ +V GI Sbjct: 582 VSAIRAASEEELVEVDGIGP 601 >UniRef50_A7HD93 UvrABC system protein C n=5 Tax=Bacteria RepID=UVRC_ANADF Length = 716 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 221/664 (33%), Positives = 330/664 (49%), Gaps = 65/664 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK--TEALVAQ 62 + + L + ++PG Y M D G V+YVGKA L+ R+ SYF ++ + L Sbjct: 3 ANLRKTLDELPAEPGCYLMKDRRGAVVYVGKASSLRSRVRSYFDASRGDDRAFVALLDEL 62 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM--HR 119 + ++V VT +E EA+LLE+ IK ++PR+N+ LRDDK + + L PRL + R Sbjct: 63 LGDVEVIVTRSEKEAVLLENELIKRHRPRFNIRLRDDKDFIVLRLDERHAFPRLEVRRAR 122 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + A YFGP+ + ++RETL ++ + F +R C + V+ +R RPC+ YQI RC PCV Sbjct: 123 EPRRAGARYFGPYSSASSIRETLRVVNRHFQLRTCTDHVFEHRKRPCILYQIKRCPAPCV 182 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 V E EY Q VE FL G++ +++ +L RM+ A+ L FE+AAR+RDQ+QAV R Sbjct: 183 Y-DVPEAEYRQSVEDAIEFLEGRETELVERLHGRMDEAADALRFEDAARLRDQLQAVERS 241 Query: 240 TEKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 EKQ V D DV+G+ + V VL +R GK+ SRSY P E + + Sbjct: 242 LEKQRVLMADRADRDVVGLYREGPDLVVQVLAMRAGKLQDSRSY-PFHEQEFPDEETLSS 300 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ +Y Q + P EIL+ ++ LAD LSE GR++ + T RG +A L++A Sbjct: 301 FLSLYYEQNAA----PEEILVPVEPAEVDALADVLSERRGRRVRLLTPQRGAKADLLEVA 356 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDA 417 NA S + Q L AL L L R MEC+DIS G V S V F Sbjct: 357 ARNAEQGFRSWHEKDERREQALAALTRALHLARPPRWMECYDISTFQGALAVGSGVSFRD 416 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P +A YRRY + G+ DD+A + +V+ RR +A+ + PD+++IDGGKGQL A Sbjct: 417 GEPDKACYRRYKVKGVAGQDDFAMLYEVVSRRLRRALGEGAFPDLLVIDGGKGQLNAALA 476 Query: 478 VFAELDVSWDKNH-------PLLLGVAKGA------------------------------ 500 +L V + L+G+AK Sbjct: 477 AAKDLGVPTKPSPGNEGAPFVELVGLAKSRLVDAPALGTTRVIGRRGRGGGASRAASGAA 536 Query: 501 ---------------DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 + E +F + L +S L ++ +RDE+H AI H Sbjct: 537 ALADAAEAQEHGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFH 596 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 RK R + S LE I G+G R++ LL++ G L+ ++ A+++EI++V G A +F Sbjct: 597 RKLRRERNFQSVLEEISGIGEGRKRALLRHFGALRRVKEATLDEISQVDGFGPKQARAVF 656 Query: 606 WSLK 609 Sbjct: 657 EFFH 660 >UniRef50_Q03F33 UvrABC system protein C n=7 Tax=Firmicutes RepID=UVRC_PEDPA Length = 594 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 211/609 (34%), Positives = 332/609 (54%), Gaps = 30/609 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + L + +PG Y+M + +IYVGKAK+LK R+ SYF + KT LV++I Sbjct: 5 HIEHKLALLPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIAD 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 D VT ++ EA LLE I+ +QP YN+ L+ YP+I ++ + PR+ + + Sbjct: 64 FDYIVTSSDKEAFLLEITLIQKFQPYYNIKLKKGTGYPYIKITNEKDPRMEIVSSVRRDG 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGP+PN YA ETL L+K++P+R+C + RPCL Y +G+CLG C + V + Sbjct: 124 GFYFGPYPNVYAAEETLHFLEKVYPLRRCNGF----QGRPCLYYHMGQCLGACFQ-EVPK 178 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-F 244 EEY QQ+ ++ FL G ++ L ++M+ AS+ +EFE AA IRDQI + EKQ Sbjct: 179 EEYDQQIAKIKSFLRGNVAKIKQSLQTKMQKASEAMEFERAADIRDQIHYIEVTVEKQKI 238 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 +SN D+ D G + + FIRQ +++ P T++++ + +F+ QFY Sbjct: 239 ISNDSTPRDLFNFYLDKGWLSIQIFFIRQSRLIKREKRLF--PIATDVNDELSSFILQFY 296 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 ++ + LP EIL+ L + ++E+ G + V+T RG++ L+LA+ NA Sbjct: 297 --NNKNKVLPNEILVPSGLDN-----KIMAEILG--VPVRTPQRGEKKNLLELAKENAQI 347 Query: 365 ALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGP 420 L K +S + + L +PE R+E FD SH G + V++ VVF P Sbjct: 348 TLEEKFRLMELDESKTTGAMKEITDALGIPEGHRIEAFDHSHIQGSELVSAMVVFTDGKP 407 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVF 479 + YR++ + + D+ A+ +V+RRRY + + + + +PD+IL+DGG QL AK+V Sbjct: 408 DKKMYRKFKLNTVDHADEAASTREVIRRRYVRLLKEKQSLPDLILMDGGDIQLNAAKDVL 467 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 V+ H + G+ K K L F + + L P S +++Q I+DE H Sbjct: 468 ----VNELSLHIPVAGMVKNDKHKTS--DLIFGSQDQRVQLDPKSQGFYLVQRIQDEVHR 521 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR+ AK S L+ I+GVGPK R LLK G L +R+A+++EI ++ GI + Sbjct: 522 FAITFHRQLHAKNSLASQLDLIQGVGPKTRNKLLKSFGSLNKIRDANLKEIEEL-GIPEK 580 Query: 600 LAEKIFWSL 608 +A+ I SL Sbjct: 581 VAKTIKVSL 589 >UniRef50_UPI0000E87CD9 excinuclease ABC, C subunit n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87CD9 Length = 580 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 271/590 (45%), Positives = 380/590 (64%), Gaps = 13/590 (2%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 82 M + +IY+GKAKDLKKR+ SYF S +T +V I I+ TVT+TE EAL+LE+ Sbjct: 1 MLNKAEDIIYIGKAKDLKKRVLSYFNKTQPSPRTRLMVGSIASIEFTVTNTEAEALILEN 60 Query: 83 NYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETL 142 N I+ + PRYNV+ RDDKSYP++ ++GD PR+ HRG + +YFGPFPN AVR+++ Sbjct: 61 NMIRSFMPRYNVIFRDDKSYPYLAITGDKFPRIRFHRGLQKIDTKYFGPFPNSNAVRQSI 120 Query: 143 ALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGK 202 LLQK+F +R CENSV+ NRSRPCL++QI RC PCV GL+ E+EY V LFL GK Sbjct: 121 QLLQKVFMLRTCENSVFNNRSRPCLEHQIKRCTAPCV-GLIEEDEYGADVNQANLFLDGK 179 Query: 203 DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN-TGDDLDVIGVAFDA 261 D +V+ L +M S+ FE AA RD+IQ++R+V KQFVS+ + +D D+I A + Sbjct: 180 DSEVIGNLTKKMNEQSEAFNFERAAIFRDRIQSLRQVRLKQFVSDFSENDADIIAFAEAS 239 Query: 262 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 321 G C +V+ IR G+ LG +++FPK G +++TF+ Q+Y P +++ Sbjct: 240 GKICANVVMIRGGRHLGDKTFFPKNHDGHIEESIIDTFITQYYDLHK-----PPPVIVTE 294 Query: 322 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 381 N L+ + + K+ + ++ GD+ +L +A+ NA +L K ++Q++ +RL Sbjct: 295 NKVSNELVKEFFAIKQYGKVRLLSRLTGDKKNWLLMAKKNAQISLEQKNNEQASQVERLL 354 Query: 382 ALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYA 440 AL ++L LP V R+EC+DISHTMGE TV SCVV+D +YR+YNI ITPGDDY Sbjct: 355 ALRALLGLPDHVNRIECYDISHTMGESTVGSCVVYDKYEMQNKDYRKYNIKNITPGDDYG 414 Query: 441 AMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKG 499 AM QVL RR+ + ++ I PD++LIDGGKGQ AK + + ++ L+GV+KG Sbjct: 415 AMKQVLERRFKRMAEEDAIKPDLVLIDGGKGQFGVAKKIMEDNGIT----DIYLVGVSKG 470 Query: 500 ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLE 559 ADRKAG E L + ++ P+ H+IQHIRDESH AI GHR KRAK + +SS+E Sbjct: 471 ADRKAGKEKLIIGEDKVLDTVNPEDLGFHLIQHIRDESHRFAITGHRAKRAKNRMSSSIE 530 Query: 560 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 +EGVG K+R+ LL Y GGL+G++NA VEE+ V GI+ LAEKIF Sbjct: 531 EVEGVGAKKRKSLLVYFGGLEGVKNAPVEELMLVEGINARLAEKIFSYFH 580 >UniRef50_Q01S04 UvrABC system protein C n=2 Tax=Acidobacteria RepID=UVRC_SOLUE Length = 623 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 206/609 (33%), Positives = 325/609 (53%), Gaps = 21/609 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQI 63 + + + + PGVY D+GG VIYVGKAK L+ R+ SYF + KT L+ + Sbjct: 1 MELRDKVGQLPFSPGVYLYKDSGGKVIYVGKAKSLRNRVRSYFSEDKLGDIKTGTLITEA 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 ID + E EAL LE+N IK Y+PR+N+LLRDDK+YP++ ++ + +PR+ + R + Sbjct: 61 CDIDYILVDNEKEALALENNLIKQYKPRFNILLRDDKTYPYVKVTNEKYPRVYVTRRLRK 120 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +YFGPF + + + F + C+ + R +PCLQ+ I RCLGPCV+GL Sbjct: 121 DGAQYFGPFFPANLAHRLVHFIHRHFQVPSCKVDLTRFHPKPCLQFHIHRCLGPCVQGLT 180 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 ++E YA V VRLFL G+ + L +RME AS + FEEAA +RD I V + E+Q Sbjct: 181 TDEAYAAAVRDVRLFLDGRHSDLARGLRARMEAASLEMRFEEAAGLRDLITTVEEIEERQ 240 Query: 244 FVSNT-GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 ++ GDD+D+ V + + +++ +R G+++ R F + + S + + + Q Sbjct: 241 KMAAAKGDDVDIFAVYAEPPLVALNIFHLRNGQIVDRRELFWEDQFEYDESLFLSSLLKQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 YL + +P EI + D L + L+E R++ ++T RG + L L TNA Sbjct: 301 IYLD---QQFVPAEIHVPVEFEDLEALEELLTEKRQRRVEIRTPQRGQKKALLGLVETNA 357 Query: 363 ATALTSKLSQQSTVHQRLTA-LASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 + ++ + + L L LP+ R+ECFDISH G VAS VV++ Sbjct: 358 KHSFDARFRVLKPSSRAIQEALQDALNLPDAPSRIECFDISHIQGTDKVASMVVWEDGKM 417 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVF 479 +++YR++ I + DD+A+M +V+ RRY + ++ +P ++LIDGG GQL A Sbjct: 418 KKSDYRKFIIRTVVGNDDFASMREVVTRRYSRLQEEKQPMPGLVLIDGGLGQLHAAAEAL 477 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP-EGEGFSLPPDSPALHVIQHIRDESH 538 + ++ L +AK E ++ E E L SP LH++Q IRDE+H Sbjct: 478 EAIGIA----DQPLASIAKRE------EIIYVFGQEDEPVVLDRFSPILHLVQSIRDEAH 527 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A+ HR R + TS L+ I GVG K Q LLK G L+ +R A+ ++A V + + Sbjct: 528 RFAVTFHRSLRNTRQLTSELDAIRGVGAKTVQKLLKEFGSLERVRAATETQLATV--VGR 585 Query: 599 GLAEKIFWS 607 A+++ Sbjct: 586 AAAKRVIAH 594 >UniRef50_B3EU62 Excinuclease ABC, C subunit n=2 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3EU62_AMOA5 Length = 596 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 200/622 (32%), Positives = 330/622 (53%), Gaps = 39/622 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEAL 59 M + + + +QPGVY Y+ +IYVGKAKDLKKR+SSYF N KT + Sbjct: 1 MEAKQYEITEIGKLPNQPGVYFFYNKQQQIIYVGKAKDLKKRVSSYFNKNQQDNLKTRRM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V +I I T+ ++E EALLLE+N IK +QPRYN+LL+DDKS+P+I ++ + P++ R Sbjct: 61 VEEIAAISFTIVNSEYEALLLENNLIKRFQPRYNILLKDDKSFPYICITRERFPKVITTR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRC 174 G+Y+GPF + + + L L++ ++ +R C ++ +++ + CL+Y IG C Sbjct: 121 QPGAKLGQYYGPFTDLKNMYQILDLIKSLYTLRTCNYNLLEENICKHKFKVCLEYHIGHC 180 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 GPC EGL +EE Y Q ++ + FL G + V +M A+ ++++ A +++I Sbjct: 181 KGPC-EGLQTEEAYNQDIQQIEHFLKGNINAVKKHFKEKMSQAAAAMDYKNAQAYKEKIA 239 Query: 235 AVRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 A+ K V N +LDV + DA A + L I++G ++ +++ K Sbjct: 240 ALENYQSKSLVVNPQVGNLDVFAIVSDAKAAFISYLQIKEGAIICTQNTEIKKQLEELDE 299 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 +++ + F + + P EIL++ ++ K + GD+ + Sbjct: 300 DILPLIILHF---REKYASNPSEILVNIPIATTF-----------DKAMLTVPRIGDKKK 345 Query: 354 YLKLARTNA----ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQT 408 ++LA N AL + Q+ ++ L L L+L ++ +ECFD S+ G Sbjct: 346 LVELATKNVLFLKREALLRQEDNQNRANKTLVLLQHDLQLKDLPLHIECFDNSNIQGTHP 405 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDG 467 VA+ VVF P + EYR +NI + DD+A+M +++ RRY + I+++ K+PD+I+IDG Sbjct: 406 VAAMVVFQHGKPAKKEYRHFNIKTVVGPDDFASMREIVTRRYRRLIEENQKLPDLIVIDG 465 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL A EL + ++G+AK LE ++F + + SP+L Sbjct: 466 GKGQLGAAVAALQELGIYG---QIPIIGIAK------RLEEIYFPEDSYPIHISKQSPSL 516 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 ++Q IR+E+H AI HR KR+K S LE+I GVG K LL++ G +Q ++ AS+ Sbjct: 517 KLLQQIRNEAHRFAITFHRDKRSKTSLKSQLESIPGVGEKTITTLLQHFGSVQNIKEASL 576 Query: 588 EEIAKVPGISQGLAEKIFWSLK 609 + +A + A +I LK Sbjct: 577 KALASQ--VGNKRAIQIKEHLK 596 >UniRef50_A5FM03 UvrABC system protein C n=25 Tax=Bacteroidetes RepID=UVRC_FLAJ1 Length = 597 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 210/620 (33%), Positives = 324/620 (52%), Gaps = 41/620 (6%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 + + T+ PGVY+ YD G ++YVGKAK+LKKR+SSYF + KT LV +I Sbjct: 3 KPSLDLQILTLPDNPGVYQYYDKDGKILYVGKAKNLKKRVSSYFNKIHDTAKTNVLVKKI 62 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 I V TET+ALLLE+N IK QPRYNVLLRDDKSYP+I + + R+ + R Sbjct: 63 VTIKHIVVPTETDALLLENNLIKTLQPRYNVLLRDDKSYPWICIKKEPFSRIFLTRRMVK 122 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGRCLGPC 178 EYFGP+ N V L L+++++P+R C + + + + CL+Y IG C GPC Sbjct: 123 DGSEYFGPYTNFKMVYTILDLIKELYPLRTCNYDLSQSNIDSGKFKVCLEYHIGNCKGPC 182 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 EGL EEY +QV +R L G + L M +QNL+FEEA +I+++I+ + Sbjct: 183 -EGLEPLEEYQRQVNAIREILKGNFKESLKDFKKLMNNYAQNLQFEEAQKIKEKIEVLEN 241 Query: 239 VTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + + N ++DV + D A V+ L I G ++ S + K E++E Sbjct: 242 YQSRSTIVNPKITNIDVFSIISDESAAYVNFLQISHGSIIRSHTLEMKKKLDESDEELLE 301 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 + + + + + EI++ F + G I GD+ + L L Sbjct: 302 LAIIEL---RERFQLMSKEIIVPFEID------------LGENIKTTVPQLGDKKQILDL 346 Query: 358 ARTNAATALTSKLSQ------QSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVA 410 + NA +L Q V++ + + L+LP R +ECFD S+ G VA Sbjct: 347 SIRNAKFYRIEQLKQLQIVDPDRHVNRIMAQMQKDLRLPVEPRHIECFDNSNIQGTNPVA 406 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGK 469 +CVVF P + +YR +N+ + DD+A+M +++ RRY + +D++ +P +I+IDGGK Sbjct: 407 ACVVFKDGKPSKKDYRHFNVKTVEGPDDFASMTEIVYRRYKRLLDENQPLPQLIIIDGGK 466 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL+ A EL + ++G+AK LE LF+ + L S L V Sbjct: 467 GQLSSALKSIDELGLRGK---VAIIGIAK------RLEELFYPGDSIPLYLDKKSETLKV 517 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 IQ +R+E+H I HR KR+K SS+E+I G+G K L+++ ++ L+ A+ +E Sbjct: 518 IQQLRNEAHRFGITFHRDKRSKAALNSSVESIPGIGEKTMLTLIQHFKSVKRLKLATEKE 577 Query: 590 IAKVPGISQGLAEKIFWSLK 609 I+ V G+S+ A+KI K Sbjct: 578 ISAVVGVSK--AKKIVDFYK 595 >UniRef50_B9M422 UvrABC system protein C n=8 Tax=Desulfuromonadales RepID=UVRC_GEOSF Length = 622 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 217/611 (35%), Positives = 325/611 (53%), Gaps = 21/611 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVT 69 + S PGVY M DA TV+YVGKA+DL+KR+ SYF ++ SR + L+A++ I Sbjct: 7 IGHFPSSPGVYIMKDAEATVLYVGKARDLRKRIRSYFAASGDSRYQIRFLMARVTDIQFI 66 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 VT TE EAL+LE+ IK Y+P+YN LRDDK+Y + + PRL++ R Y Sbjct: 67 VTDTEKEALILENTLIKKYRPKYNFNLRDDKTYFSLRMDMSSDFPRLSIIRKVTRDGARY 126 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGP+ + R L L K+FP+R R R+RPCL YQ+ +C PC G +S E+Y Sbjct: 127 FGPYSSASDARAVLKHLYKLFPLRHYPMETCRRRNRPCLFYQLKQCSAPC-HGKISREDY 185 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNT 248 E LFL GK+ ++L RM A+ ++E+AAR RD I+++ EKQ V Sbjct: 186 MALAEGAALFLEGKNREILKIFRERMSAAAAAEKYEKAARFRDLIRSIEVTVEKQKVVAQ 245 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 G D DVIG + + +LF+R G + GSR+Y + E + +F+ ++Y Q Sbjct: 246 GGDSDVIGFYREGEQLHIALLFLRGGTLTGSRNYSFSW--EMDDHEGIASFLNEYYNQ-- 301 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 +P EI+L ++D + L EL GR++++ RG++ ++LA NA TA Sbjct: 302 -EVFIPSEIVLPIAIADPLPQEELLCELRGRRVSITVPQRGNKLELVRLAIKNAETAAAE 360 Query: 369 KLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 + + L L L L ++ R +EC+DIS+ G+ V S V F +A YRR Sbjct: 361 RKKAAESGEAILQTLKERLHLHKLPRRIECYDISNIQGQMAVGSKVAFVDGKADKAHYRR 420 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWD 487 Y I G++ DD+A M ++ RR+ PD+I++DGG GQL +V +L ++ Sbjct: 421 YRIKGVSQSDDFAMMREMFSRRFKPGTAPDDYPDLIIVDGGIGQLNVLTHVLGDLQIT-- 478 Query: 488 KNHPLLLGVAKGA-DRKAGL-------ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 G+AK DR+ G E +F L +S L ++ IRDE+H Sbjct: 479 --DVEAAGLAKSRVDREMGATEISRSDERVFLPNRKNPVVLRQNSAPLLLLARIRDEAHR 536 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 A+ H+K R S LE I G+G KRR+ LL++ G L+ + A++EE+ +V GIS Sbjct: 537 FAVAYHKKLRGNKLLASQLEAIPGIGIKRRKELLRHFGSLKKISEATLEELRQVQGISAT 596 Query: 600 LAEKIFWSLKH 610 +AE ++ L Sbjct: 597 VAESLWKHLHE 607 >UniRef50_B5YF86 UvrABC system protein C n=2 Tax=Dictyoglomus RepID=UVRC_DICT6 Length = 599 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 218/611 (35%), Positives = 348/611 (56%), Gaps = 28/611 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 D K ++ GVY YD G VIYVGKAK+L+KR+ SYF + S K+ ++ + + Sbjct: 8 MDLKQKVENFPESTGVYIFYDHSGKVIYVGKAKNLRKRVLSYFNDD--SPKSNYILKKAK 65 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKH 123 I+ +T TETEAL+LE IK Y+P NV LRDDK YP + L+ + +PRL + R + Sbjct: 66 NIEFYITDTETEALILESVLIKKYRPIMNVQLRDDKQYPMLKLTLYEEYPRLVLARRFED 125 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGL 182 Y+GP+ VRET+++++KIF +R C ++ +++ RPCL Y IG C PC + Sbjct: 126 DGARYYGPYTQSGTVRETISMVKKIFNLRSCNWNLPKSKPKRPCLNYFIGNCKAPC-QNY 184 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +++EEY + V+ V FL GK ++++ +L +M+ S+NLEFE+AA+IRD+I+ ++ ++EK Sbjct: 185 ITKEEYWEIVKGVIDFLDGKYEEIIEKLYDQMQEYSKNLEFEKAAKIRDKIRLLQNLSEK 244 Query: 243 QFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q + + ++ D+I + A V IR+GK++ R + +P E++E+FV Sbjct: 245 QKIVSFNRENKDLIQFYVEDHKAKALVYLIREGKLIEKRIFNLTLPEICSNDELIESFVL 304 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTL-LADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y +G +P I++ S++ + L + L + G ++ ++T + + L +A Sbjct: 305 QYYSRGE----IPEVIVVPSPFSEEEVNLKEFLCKRKGSEVVLRTPENEEEEKLLGMALK 360 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 LT + + V L+ L + L + +E +DIS+ G + V S V F Sbjct: 361 ----DLTIESIKSEKVWLALSELQRIFNLQNLPVSIEGYDISNLQGREAVGSRVYFQNGY 416 Query: 420 PLRAEYRRYNIT-GITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 P + +YRRY I +DY + +V+RRR I++ +PD++LIDGGKGQL+ V Sbjct: 417 PEKTKYRRYKIKYTPELPNDYLMLQEVIRRRLKN-IEEDPLPDIMLIDGGKGQLSAVLEV 475 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 F EL + +L +AK E +F E L DSPALH++Q +RDE+H Sbjct: 476 FNELKIEPKF----ILALAKEK------EEIFVPGRSEPILLSYDSPALHLLQQVRDEAH 525 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A+ HRK R+K S L+ I GVG KR ++LL+ L+ L+ AS+E++ KVPGIS+ Sbjct: 526 RFAVSYHRKLRSKKLMDSHLDKIPGVGEKRMKILLEAFSTLENLKKASLEDLKKVPGISE 585 Query: 599 GLAEKIFWSLK 609 +AEKI+ Sbjct: 586 KIAEKIYLYFH 596 >UniRef50_B0VH58 Excinuclease ABC, C subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH58_9BACT Length = 601 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 195/613 (31%), Positives = 331/613 (53%), Gaps = 29/613 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + + L + QPGVY D GT+IY+GKA +LK R+ +Y KTE L+ I Sbjct: 7 EIETKLALLPEQPGVYLWKDKDGTIIYIGKALNLKHRIKNYLNPAGKDLKTEHLIKNIAD 66 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 +D +T++E +A +LE +K Y+P+YN++L+DDK YPF+ ++ + PR+ + R Sbjct: 67 LDYIITNSEADAFILEATLVKRYRPKYNIMLKDDKRYPFVKITVNEPFPRIFITRELLKD 126 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-PCLQYQIGRCLGPCVEGLV 183 +YFGP+ +R TL L+ IFP+R C ++ + + + PC+ +Q+G+C PC+ G + Sbjct: 127 NAKYFGPYTEVRYLRNTLRDLEWIFPLRSCNRNIPKIKYKQPCMNFQLGKCPAPCI-GNI 185 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S++ YA+ V + F +G+ ++L +L + M+ AS L FEEA + RD+I A+ R+ ++Q Sbjct: 186 SQKNYAKTVNQLLRFFNGRYTELLDELRTEMQNASAELRFEEAGKFRDRIIAIERIQKRQ 245 Query: 244 FVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V N G ++D+IG + A +L ++ G ++ +Y E ++ +F+ Sbjct: 246 SVFNVEGGNIDIIGFYREEKRAVCVILKMKNGAIIHQENYPLTNLDYEEPDSILASFLQL 305 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y + +P E+LL F D L L +Q RG++ + + +A+TNA Sbjct: 306 YYADREE---MPEEVLLPFAPKDMDKLNSWLGNK------LQIPQRGEKTKLIAMAKTNA 356 Query: 363 ATALTS----KLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDA 417 + L + + + L LKLP++ R + C DIS G TV+S V F+ Sbjct: 357 FNIVEESKLAHLRKANRTIFPVQELKEALKLPKLPRKIVCMDISTIQGSDTVSSAVFFEN 416 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAK 476 + YR + I I +DYAAM + + R + + ++ PD+I+IDGGKGQL+ ++ Sbjct: 417 GKSKKKYYRHFIIRSIETQNDYAAMQETMARFLTETEKEPQMKPDLIVIDGGKGQLSASE 476 Query: 477 NVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 + KN ++ +AK E +F + LP S AL ++ +IRDE Sbjct: 477 QILRASG----KNDISIIALAK------RAEEVFVPGNEQSIILPRSSSALRLLINIRDE 526 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 +H A+ HRK+R++ S LE+I G+G K + +LLK +G ++ + NA+ E ++K+ GI Sbjct: 527 AHRFALSLHRKRRSRRTLESELESISGIGEKNKFLLLKELGSVENIANANRETLSKIKGI 586 Query: 597 SQGLAEKIFWSLK 609 +AEKI+ Sbjct: 587 GPKIAEKIYNHFH 599 >UniRef50_B6AR33 Excinuclease ABC, C subunit (UvrC) n=3 Tax=Leptospirillum RepID=B6AR33_9BACT Length = 632 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 217/610 (35%), Positives = 336/610 (55%), Gaps = 15/610 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQIQQ 65 + L+T+ +PGVY M G V+YVGK++ LK R+ SYF+ S + LV++++ Sbjct: 17 VEDRLRTLPEEPGVYLMKSETGEVLYVGKSRSLKDRVRSYFQETRVRSARIALLVSRVRD 76 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHA 124 +++ T TE +AL+LE+ IK Y+PRYNVLLRDDK+YP++ S D PRL + R ++ Sbjct: 77 LEIIRTKTELDALILENTLIKRYRPRYNVLLRDDKTYPYLKFSWNDPFPRLTITRRVRND 136 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLV 183 YFGP+PN A+++TL L+++ FP+ C + + RPC++YQI RCLGPCV GL Sbjct: 137 GNLYFGPYPNPSAMKDTLRLIRRTFPLATCTIPLDQPTLERPCVEYQIKRCLGPCVAGLT 196 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +E EY Q VRLFL GK + +L L + M+ ++NLEFE+AA +RD+ + V +V EK Sbjct: 197 TETEYRQVAMGVRLFLQGKSNDLLFLLENEMKARAKNLEFEKAAAVRDRYRNVLQVLEKH 256 Query: 244 FVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 VS +D + +A A + V+ IR G ++G K E++ F+ Q Sbjct: 257 TVSFPFQHPIDGLYLARSGTTALMLVMHIRNGLLIGKEEVELKNTEEASDEELLVAFLEQ 316 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLL-ADSLSELAGR-KINVQTKPRGDRARYLKLART 360 FY G + LPGEILL +L ++ L+ +SE G + + + RGD+ L L R Sbjct: 317 FY--GKESAFLPGEILLPVSLPEEDLMTLSWMSEKKGEDPVRIISPKRGDKKMILDLVRE 374 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMEC-FDISHTMGEQTVASCVVFDANG 419 NA AL ++ ++ + L S+LK R+ C DIS+T VAS V F Sbjct: 375 NAEEALNAREKRKLNSTELLDEARSLLKRDRPPRLLCCVDISNTGDLLPVASLVTFQDGK 434 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 P ++ YR++ I DD+ +++V+ R+Y ++ +PD+++IDGG QL Sbjct: 435 PEKSLYRKFRIRYEKGQDDFKMLSEVMERQYR----ENPLPDLLVIDGGPLQLDACVRTL 490 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 ++ ++ +AK K E +FF + LP P H++ +RDE+H Sbjct: 491 EDMGHHDASRR--VVSLAKERTNKNKSERIFFPGQENPLILPGHHPVTHLLVRLRDEAHR 548 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HR R + S L I GVGP R + LL+ G ++ L A++E+I + G+S Sbjct: 549 FAIKYHRTLREEYLTHSRLLNIPGVGPAREKKLLQSFGSVKNLMEATIEDIVQNTGLSVA 608 Query: 600 LAEKIFWSLK 609 L+ I+ SL+ Sbjct: 609 LSTSIYQSLR 618 >UniRef50_C6XFB9 Excinuclease ABC subunit C n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFB9_LIBAP Length = 616 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 215/617 (34%), Positives = 339/617 (54%), Gaps = 31/617 (5%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT Sbjct: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYFG 130 TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFG Sbjct: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC G +S E+Y + Sbjct: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYME 182 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD 250 V + FLSG + + ++ M A+ ++E A RD++ A+ + + + Sbjct: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--DSIYN 240 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T KL Sbjct: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 Query: 371 SQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 S + + L LP + R+E +D SH MG V VV NG ++ +YR++N Sbjct: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 Query: 430 IT--GITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQL 472 + + DD A M VL RR+ + I + + PDV+++DGGKGQL Sbjct: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + A+ V +L+V +N ++ +AKG R AG+E FF +GE L P L+ IQ Sbjct: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQR 532 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 Query: 593 VPGISQGLAEKIFWSLK 609 + GIS+ +A KI+ Sbjct: 592 IEGISKKIACKIYNHFH 608 >UniRef50_A1WLD5 UvrABC system protein C n=17 Tax=Burkholderiales RepID=UVRC_VEREI Length = 685 Score = 593 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 268/691 (38%), Positives = 383/691 (55%), Gaps = 97/691 (14%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + A + + + PGVYR +D+ G ++YVGKA+ LK+R++SYF N + +V +I + Sbjct: 5 ELLAQVAALPALPGVYRYFDSQGLLLYVGKARHLKRRVASYFTKNHGGTRIGHMVCKIAR 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT------------HP 113 ++ TV +E EALLLE+N IK PR+N+L RDDKSYP++ ++G P Sbjct: 65 LETTVVRSEAEALLLENNLIKTQNPRFNILFRDDKSYPYLKITGAPASSAGRDAPGQRFP 124 Query: 114 RLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR 173 R+A +RGA + YFGP+P+ +AV+E++ LLQK+F +R CE++V+ NR+RPCL YQI R Sbjct: 125 RIAYYRGAVDKQHRYFGPYPSAWAVKESIELLQKVFRLRTCEDTVFANRTRPCLLYQIKR 184 Query: 174 CLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQI 233 C GPCV L++ E YA V++ + LSG+ ++L + +RM S L FE+AA +R+Q+ Sbjct: 185 CSGPCV-NLIAPEAYAVDVQHAQALLSGQTQELLQAMEARMMAYSGQLAFEQAAEVRNQM 243 Query: 234 QAVRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 QA+ RV +Q + + D D+D++ V G ACV++ +R G+ LG R YFP L Sbjct: 244 QALSRVLHQQSIESAHDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPTHLEDAAL 303 Query: 293 SE--------------------VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADS 332 E V+E FV Q Y+ + P +L+ DK LL Sbjct: 304 FEQETRDAEEAPATPPRPVEALVLEAFVAQHYMVVA-----PPPVLVTSTPLDKALLEAL 358 Query: 333 LSELAGRK-----------------------------INVQTKPRGDRARYLKLARTNAA 363 L + I +PR R +L++A+ NA Sbjct: 359 SGHLTAAQGGDHAPAAQGGDPPPAASSGGHPLRGTVHITAVHQPREQRRAWLEMAQKNAD 418 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLP----EVKRMECFDISHTMGEQTVASCVVFDANG 419 L L+Q+ + R ALA L LP + +ECFDISHT GE T ASCVVF + Sbjct: 419 LQLARLLAQEGSQQARTRALAEALDLPLADLDPLTIECFDISHTAGEATQASCVVFHHHK 478 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID--------------------DSKI 459 +EYRRY I GIT GDDYAAM QVL RRYGK + +++ Sbjct: 479 MQSSEYRRYKIDGITGGDDYAAMRQVLTRRYGKLAEAAHEAGGVDCAARPAAPAQGQARL 538 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++LIDGGKGQ+ A+ VF L + + ++GV KG RK GLE L F E S Sbjct: 539 PDLVLIDGGKGQVGVAREVFTALGLDLTR----IVGVEKGEGRKVGLEELVFADGREKAS 594 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN-TSSLETIEGVGPKRRQMLLKYMGG 578 L DS AL ++ IRDE+H AI G R RA+V+ L+ I GVGPK+R LL+ GG Sbjct: 595 LGKDSAALMLVAQIRDEAHRFAITGMRAARARVRTGGGQLQEIAGVGPKKRARLLQRFGG 654 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++G+ +ASVE++ V GIS+ LAE+I+ +L+ Sbjct: 655 VRGVASASVEDLITVDGISRALAEEIYRALR 685 >UniRef50_D0RRP8 Excinuclease ABC subunit C n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRP8_9RICK Length = 612 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 205/610 (33%), Positives = 333/610 (54%), Gaps = 21/610 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K K ++ PGVY+++D +IYVGKAK+L RLS+Y S+ +TE ++A +I Sbjct: 11 FKNKSKLCSNSPGVYQVFDEKNKIIYVGKAKNLPNRLSNYSSSSTQPIRTERMIASTNRI 70 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAK 125 D T E+EALLLE N IK +PRYNVLL+DDKS+P+I + S +P++ RG + K Sbjct: 71 DTISTLNESEALLLEANLIKKNKPRYNVLLKDDKSFPYIQIRSSHDYPQITKFRGKHNDK 130 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGPF + + T+ +LQK+F IR C+++ ++ RSRPC+ YQI RC GPC G +++ Sbjct: 131 DIYFGPFASIASANWTIKMLQKVFQIRVCDDNTFKGRSRPCILYQIKRCSGPCT-GEITK 189 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 EY++ V+ FL+GK + ++ ME S L FE+AA +RD+I+++ + Q + Sbjct: 190 SEYSKTVDECSSFLNGKSRDIQKKMSQEMEKESDRLNFEKAAILRDRIKSLTYIQSSQNI 249 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 D D+I + CV + F R + GS+ ++PK ++++F+ QFY Sbjct: 250 QKNNLKDADLIVSHRKENITCVVIFFYRSKQNWGSQYFYPKHDHEDSDEHILKSFLTQFY 309 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + + P E++L+ + L+ + + +KI ++ P + +K A NA Sbjct: 310 ----ENKEPPSELVLNLTPENHELIKSAFEKKYNKKILIKISP---KNSMVKNAVKNAQE 362 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRA 423 L K+ Q + L ++ KL +E +D SH G+ + + + F +G ++ Sbjct: 363 QLQIKILSQEKNNDLLISMGEKFKLGFTPSLIEVYDNSHNQGDSNIGALIAFGKDGFIKN 422 Query: 424 EYRRYNITG--ITPGDDYAAMNQVLRRRYGKA--IDDSKIPDVILIDGGKGQLAQAKNVF 479 YR++NI I DDY M +V++RR+ K + D +PD++LIDGGKGQ + +N Sbjct: 423 RYRKFNIKNTKIKSNDDYGMMTEVIQRRFSKVDSLTDENVPDLLLIDGGKGQYSVVRNKL 482 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 +L ++ ++KG +R G E E L + P L + Q IRDE+H Sbjct: 483 NDLGFHG----LKIIAISKGKERNKGNEKFI--SEDGVIELDKNDPVLFLTQRIRDEAHR 536 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 AI HRKK+ K S L+ I+G+G KR++ LL + G + + AS+++I + GI+ Sbjct: 537 FAITTHRKKKTKQMFKSPLDEIDGIGSKRKKALLSHFGSAKAIEGASLDDIKSIDGINDS 596 Query: 600 LAEKIFWSLK 609 AEK++ Sbjct: 597 SAEKVYNFFH 606 >UniRef50_C7N5B1 Excinuclease ABC, C subunit n=6 Tax=Coriobacteriaceae RepID=C7N5B1_SLAHD Length = 666 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 207/640 (32%), Positives = 326/640 (50%), Gaps = 48/640 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 D K L +V + PGVY + G VIYVGKAK L+ R+ Y K LV QI Sbjct: 8 QDIKHQLASVPTLPGVYLWKNKDGEVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVDQID 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRGAKH 123 + V E EAL+LE N I Y P +N +D+KSYPFI L+ P + R Sbjct: 68 SFEYIVVENEHEALVLEKNLINQYAPFFNADFKDNKSYPFIALTKGDVFPAIKYTREKHV 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIR--QC---------------ENSVYRNRSRPC 166 A YFGP+ +G A R+ + +++K+ P+ C + +RPC Sbjct: 128 ASTRYFGPYTDGRAARQLVDIVRKVVPLCSSSCAEWRRLKKKLDNDDLTAFLSETGTRPC 187 Query: 167 LQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEA 226 +G G C G ++ E+Y + VE V FLSG+ + + +L M A+ +L+FE A Sbjct: 188 FDAHVGLGPGACC-GQITPEDYRRHVERVEKFLSGRRTEFIEELTQEMMEAAADLDFERA 246 Query: 227 ARIRDQIQAVRRVTEKQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK 285 AR++ +I + +T++Q VS+ + DV+G+ + +A VHV IR+G+++ S + Sbjct: 247 ARLKSRIDTINSLTDRQHAVSSRNLNADVVGIHREETIAGVHVFMIREGRIINSNEFVLD 306 Query: 286 VPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADS----LSELAGRKI 341 +++ TF+ ++Y ++P E++++ L D + + L+ G K+ Sbjct: 307 RGSDVPDEDLLHTFLLRYYD---ATTSIPHEVIVERELEDSDAMEEWLTGKLASKFGAKV 363 Query: 342 NVQTKPRGDRARYLKLARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEVK-RME 396 ++ RG++A L++AR NA+ L + V+ L L S L L E R+E Sbjct: 364 HLTVPARGEKAELLEMARKNASHTLNRYKVRTNYEDKRVNAALLQLESALALDEPPMRIE 423 Query: 397 CFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG-ITPGDDYAAMNQVLRRRY--GKA 453 CFDIS G TVAS VVF P + +YRR+ I + DD+ +M +V+ RRY + Sbjct: 424 CFDISTIHGSYTVASMVVFTDGRPDKGQYRRFKIKTPLDEADDFLSMREVIGRRYAPERM 483 Query: 454 IDD--SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFF 511 D K PD++++DGG QL + F E+ ++ + G+AK E LF Sbjct: 484 ADTRFGKKPDLLILDGGLPQLNAVLDQFEEMGIN----DIPVCGLAKRD------EELFV 533 Query: 512 EPEGE-GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQ 570 + LP S +L++++H+RDESH AI HR+ R K S L+ + G+GP R++ Sbjct: 534 PWQQTGPVVLPGGSASLYLVKHVRDESHRFAITFHRELRGKGMTKSILDDVVGLGPVRKK 593 Query: 571 MLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 LLK MGG + LR AS+EEI + +AE+++ L+ Sbjct: 594 ALLKSMGGFKKLRAASLEEIKATKSVPAEVAEEVYAVLRQ 633 >UniRef50_A0M672 UvrABC system protein C n=7 Tax=Bacteroidetes RepID=UVRC_GRAFK Length = 597 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 194/621 (31%), Positives = 324/621 (52%), Gaps = 41/621 (6%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 ++ + LKT+ + PGVY+ +D G ++YVGKAK+LKKR++SYF N S + +V + Sbjct: 2 EKPALEVQLKTLPNSPGVYQYFDKNGKILYVGKAKNLKKRVTSYFNKNHDSHRIGVMVKK 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 I +I V +ET+ALLLE+N IK +QPR+NV+L+DDK+YP+I + + PR+ R Sbjct: 62 ICEIKHIVVASETDALLLENNLIKKHQPRFNVMLKDDKTYPWICIKNERFPRVFPTRRLI 121 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSR-----PCLQYQIGRCLGP 177 EY+GPF + V L L++ ++ +R C + ++ R CL+Y +G CLGP Sbjct: 122 KDGSEYYGPFTSFKTVNTLLDLIKGLYKLRTCNYDLAEDKIRNGKYKVCLEYHLGNCLGP 181 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C EG EEEY +E +R + G L + ++M+ S+ +EFE+A RI+++I + Sbjct: 182 C-EGFQPEEEYNNNIEAIRQIVKGNFKDSLQRFRNQMKQHSEKMEFEDAQRIKNKIDVLE 240 Query: 238 RVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 K V N +++DV V D G V+ L + G ++ S + K E++ Sbjct: 241 NYQAKSTVVNPRINNVDVFSVVSDEGYGYVNFLQLSHGAIIRSHTIEMKKKLDESDRELL 300 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 E + + + S T EI + F + G ++ + GD+ + ++ Sbjct: 301 ELAIVEIRQRFSSNST---EIYVPFKVD------------VGEELKIVIPKLGDKKKIVE 345 Query: 357 LARTNAATALTSKLSQQS------TVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTV 409 L++ NA + Q V++ + + L+L + R +ECFD S+ G V Sbjct: 346 LSQRNAKYFRQERFKQMKIVDPDRHVNRVMAQMKEDLRLGKEPRHIECFDNSNIQGTNPV 405 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGG 468 A+CVVF P + +YR++NI + DD+A+M +V+ RRY + +++ +P++I++DGG Sbjct: 406 AACVVFKNGKPSKKDYRKFNIKTVEGPDDFASMEEVVFRRYRRLLNEGEDLPELIIVDGG 465 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL+ L + ++G+AK LE +F+ + L S L Sbjct: 466 KGQLSSGVKALETLGLRGK---IAIIGIAK------RLEEIFYPEDSIPLYLDKKSETLK 516 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 +IQ +R+E+H I HR KR+K + LE+I+G+G K LL + L+ ++ AS + Sbjct: 517 IIQQLRNEAHRFGITFHRNKRSKTALNTELESIQGIGEKTVVELLTHFRSLKRIKEASQK 576 Query: 589 EIAKVPGISQGLAEKIFWSLK 609 E+A V + A I Sbjct: 577 ELADV--VGSAKAAIICNFYH 595 >UniRef50_A6NZD4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZD4_9BACE Length = 616 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 200/614 (32%), Positives = 321/614 (52%), Gaps = 24/614 (3%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQ 64 + K + +PGVY M D VIYVGKAK LK R+S YF + KT A+V+QI Sbjct: 5 ELKEKAHALPLKPGVYIMQDKHNVVIYVGKAKALKNRVSQYFADLASHTEKTRAMVSQID 64 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 DV V +E EAL+LE + IK +QP YN+LL+DDK YP+I L+ + +PR ++ A Sbjct: 65 HFDVIVADSEFEALVLESSLIKRHQPHYNILLKDDKGYPYIRLTVNEDYPRFSLANKAAD 124 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEG 181 YFGP+ + + + + L+ + C R + RPCL Y +G C G C G Sbjct: 125 DGARYFGPYGSRGSTQGIIDALRAALKLPSCNRRFPRDIGKERPCLNYHMGLCDGYCRFG 184 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + +E Y ++ L G+ +V ++ + ME A++ L FE+AA +RD+ +A+ + + Sbjct: 185 M-PQERYRDAIDQAIRLLEGQFKEVGDEIQAEMEQAAEELRFEKAAELRDRYRAIELLGK 243 Query: 242 KQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q V + D DV+G +C VL G++ + P E+++VV V Sbjct: 244 RQKVMAGSLADTDVVGFHRGTAKSCFVVLHYVDGELAAKDWDLMETPMEEEIADVVSALV 303 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Q+Y + +Q LP +ILL + D+ LA LSE AGR++N+ T RG + ++LA Sbjct: 304 RQYYGERNQ---LPRQILLPCEIEDEVPLARLLSENAGRRVNLITPQRGAKMDLIRLANK 360 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 NA + +++ + L LA +LKL + RME +DIS+ + VAS VV+ Sbjct: 361 NAEEEVARWTTKEERTSKLLELLAKMLKLDKPPMRMESYDISNQGADDIVASMVVYQNAR 420 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----KIPDVILIDGGKGQLAQA 475 PL+ +YRR+ + + DDYA+M QVL RR+ + +D +PD++LIDGG+ A Sbjct: 421 PLKRDYRRFKLKDMDAPDDYASMEQVLTRRFRRYLDGDEKFKDLPDLLLIDGGENHAKVA 480 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 V L +S + G+ K + PEG + + +I I++ Sbjct: 481 VKVLETLGLS-----IPVFGMVKDDRHRTRA---LVTPEGREIGIQANQAVFSLIGQIQE 532 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI HR+++ + S L+ I GVG KRR LLK+ ++ ++ A++EE+ Sbjct: 533 ETHRFAIEFHRQQQNQRVKGSVLDKIPGVGEKRRADLLKHFKSVKNIKAATLEELEAA-- 590 Query: 596 ISQGLAEKIFWSLK 609 + + A+ ++ + Sbjct: 591 VPKNTAKAVYDYFR 604 >UniRef50_B0SB16 UvrABC system protein C n=6 Tax=Leptospira RepID=UVRC_LEPBA Length = 614 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 199/621 (32%), Positives = 332/621 (53%), Gaps = 25/621 (4%) Query: 1 MSDQF---DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTE 57 M D + +K + S PG Y + G VIYVGKA L+ R+ SY N RKT Sbjct: 1 MKDSLVLKTIQEKIKNLGSLPGCYLWKNELGQVIYVGKALKLQSRVRSYLNPNQKDRKTR 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLA 116 AL ++ +D T TE EALLLE IK Y P++NV L+DDK YPF+ + + + +P + Sbjct: 61 ALFVELYDLDWIATGTEKEALLLEATLIKKYNPKFNVRLKDDKKYPFLCVSTSEDYPMVF 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY-RNRSRPCLQYQIGRCL 175 + R K YFGPF + A R+TL L+ +IFPIR+ + + RPCL + +GRCL Sbjct: 121 LTRKVKDNGDRYFGPFTDVKAARDTLELIHRIFPIRKTKLKLPLPKPQRPCLNFHMGRCL 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC +G V+++ Y++ V+ + FL GK ++++ L M AS +E+E A ++ +I+ Sbjct: 181 GPC-QGNVTKDTYSELVDEILRFLEGKKERLVADLKKAMMDASSKMEYERAGFLKQRIEK 239 Query: 236 VRRVTEKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + ++ EKQ V + G D D++G++ + +L +R G++ G +S+ ++ E Sbjct: 240 INQLREKQTVVSMDGGDEDILGISKREDEGQILILEVRGGRLEGKKSFPLTGLSFSDDEE 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFN-LSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 +F+ +YL + LP + L + + + +++ E G I ++ G + Sbjct: 300 AFTSFLRDYYL---NVTVLPSVVYLPTSAKGNYDVFLEAILEKFGTSIKLKFPEMGPKKS 356 Query: 354 YLKLARTNAATALTSKL--SQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVA 410 L+LA NA +LT ++ ++ + L L LP + R +EC+DISH G VA Sbjct: 357 LLRLAEKNADLSLTERILATKLRDQTVAMKELQEKLNLPTLPRTIECYDISHFQGSLPVA 416 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGK 469 S V+F P + YR Y + G +D +++V+ RR + ++ +PD+I+IDGG Sbjct: 417 SGVMFVEGKPYKPGYRHYKMRGYEGINDPGMIHEVIARRLSHLVNEEEPLPDLIVIDGGL 476 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 QL++A LD+ H ++G+AK E ++F E +S SP + + Sbjct: 477 TQLSRAAEAANALDL----GHIPMVGLAKKR------EEIYFPGEKHPYSFDQHSPMMRL 526 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 ++++RDE+H + R +R K S L+ I +G RR+ +L Y + + +A+ +E Sbjct: 527 LRNLRDEAHRFGVTFQRLQRKKKALKSILDDIPDIGASRRKSILMYFQAKKKVTDATRQE 586 Query: 590 IAKVPGISQGLAEKIFWSLKH 610 + KV GI LAEKIF ++++ Sbjct: 587 LEKVQGIGPVLAEKIFTNIQN 607 >UniRef50_D0LVJ3 Excinuclease ABC, C subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVJ3_HALO1 Length = 689 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 233/637 (36%), Positives = 357/637 (56%), Gaps = 45/637 (7%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEA---LVAQIQ 64 K F + + + PGVY M D G V+YVGKAK+L+ R+ YFR +R A L + Sbjct: 11 KEFFERIPTAPGVYLMKDRSGRVVYVGKAKNLRTRVRQYFRPGADARFFVAAGLLARVLA 70 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 ID V E EALLLE++ IK +QPR+N+ LRDDK Y + + +PR+ + R + Sbjct: 71 DIDTVVVDNEKEALLLENHLIKKHQPRFNINLRDDKQYLVLRIDPNADYPRVEVVRNIRD 130 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 + YFGP+ + + RETL LL + F +R C + V R R+RPCLQYQI RC GPCV V Sbjct: 131 DQARYFGPYHSATSCRETLRLLNRHFQLRTCTDHVLRTRTRPCLQYQIKRCPGPCVY-PV 189 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + YA+QV+ V +FL+GK+DQ++T+L RM + ++ EFE AAR+RD IQAV + +Q Sbjct: 190 ERDAYAEQVDDVMMFLAGKNDQLVTRLRERMSSYAEREEFEAAARLRDSIQAVDKTLARQ 249 Query: 244 FVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V D DV G+ + + + VLFIR GK++G RS + +V+ FV Q Sbjct: 250 NVVQEQFLDQDVFGMWREGDVVEIAVLFIRNGKLVGRRSLR-QGDQAFPDGQVLANFVQQ 308 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y G+ +P EI++ L D+ ++A+ L+ L G+K+ + R RAR L LA NA Sbjct: 309 YYATGT---LVPDEIVVGVELDDEAVIAEWLAGLRGKKVKILHPQRSTRARLLALAEKNA 365 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPL 421 A + S+ ++ L L + L L + R +ECFDI+H G TVAS VVF Sbjct: 366 AASAASRQNRDRDAEDTLRKLQARLGLKRLPRRIECFDIAHIQGSVTVASMVVFVDGVAE 425 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI--------------------------- 454 R+ YR++ + +T DD+AAM +VL RR+ +A+ Sbjct: 426 RSLYRKFKVKSVT-NDDFAAMYEVLSRRFRRALAAQAEAEATAEADGVGEGEGEGADGTG 484 Query: 455 ---DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH-PLLLGVAKGADR--KAGLET 508 ++PD++++DGGKGQL QA A+L + ++G+AK + +A + Sbjct: 485 KTGSSWEMPDLLVVDGGKGQLGQALTALADLGIKITAEKGFDVIGLAKEREISGEALPDR 544 Query: 509 LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKR 568 ++ E L P++ L+++ +RDE+H A HR++R + SSL+ I G+G KR Sbjct: 545 VYLRNRKEAVRLRPNTAELYLLSRVRDEAHRFANTFHRERRNRTALRSSLDDIPGIGAKR 604 Query: 569 RQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 R+ LL+ +G L+ ++ AS+EE++ V G+ + AE ++ Sbjct: 605 RRALLRELGSLKAIKQASLEELSAVSGMGRKAAEAVY 641 >UniRef50_Q2S280 UvrABC system protein C n=1 Tax=Salinibacter ruber DSM 13855 RepID=UVRC_SALRD Length = 633 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 199/632 (31%), Positives = 324/632 (51%), Gaps = 38/632 (6%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALV 60 L + + PGVY+ D +V+YVGKAK+L+ R+ +YF+ + + E +V Sbjct: 7 DKPEVLVQKLDALPTDPGVYKFLDDEESVLYVGKAKNLRNRVRTYFQQSRQRDGRIEVMV 66 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 + +D+ VT TE EAL+LE+N IK QPRYNV LRDDK+YP+I + + PR+ R Sbjct: 67 QKAVDVDIIVTDTEAEALILENNQIKELQPRYNVNLRDDKTYPYICIKNERFPRVFKTRT 126 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-----CLQYQIGRCL 175 K EYFGP+ + + + ++ +F +R C + + CLQ+ I C Sbjct: 127 VKQDGSEYFGPYADVSKMNSMMDAIRSVFQLRTCSLDLTEEKIEAGKYDVCLQHHIDNCK 186 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G SE +Y + +E V+ L+G+ +++ L M+ S FEEAAR+RDQ++A Sbjct: 187 APCV-GKQSEADYMETIEQVKKLLNGQTQELMDLLKDEMQRQSDAHNFEEAARLRDQVKA 245 Query: 236 VRRVTEKQFVSNTG-DDLDVIGVA--FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 ++ +++Q V + D DV + D + C + +R+GK++G R F + Sbjct: 246 LKDYSQQQKVVSQDFADRDVFALHVERDEDIGCGVLFQVREGKMIGKRHKFLRSVEERSD 305 Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKT-----LLADSLSELAGRKINVQTKP 347 +E++ + V +Y + P E+LL + +D L + L + G ++ ++ Sbjct: 306 AELILSLVENYYAE---ANFYPEEVLLSHDPNDHPAQDTHALEELLRQEQGHQVPIKVPQ 362 Query: 348 RGDRARYLKLARTNAATALTSKLSQQ-----STVHQRLTALASVLKLPEVK-RMECFDIS 401 RG++A +++A +NA + +QQ + + + + AL L + R++ D+S Sbjct: 363 RGEKASLVRMATSNAKLQVGEWKTQQMKRERNRIPESIKALGEALNMEAPPRRVDGIDVS 422 Query: 402 HTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG--DDYAA-MNQVLRRRYGKAIDDSK 458 H G++TVASCVVF P +++YR Y I G DDY A V RR +D Sbjct: 423 HHGGKETVASCVVFTDATPRKSDYRTYKIRSTEEGTPDDYKAMREVVRRRYRRMVEEDGP 482 Query: 459 IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGF 518 PD+++IDGGKGQL+ A + E+ + ++G+AK LE ++ + + Sbjct: 483 WPDLVVIDGGKGQLSSAVEMLKEVG---AFDRFPVIGLAK------RLEEVYRPGDSDPV 533 Query: 519 SLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGG 578 L DSPAL ++Q +RDE+H A+ RK+R K S L I G+GPK + LL G Sbjct: 534 FLAKDSPALQLLQKVRDEAHRFAVTYQRKRRKKKTLQSELLDIHGIGPKTAKKLLGEFGS 593 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 ++ A E +A+V + AE I Sbjct: 594 AAKVKEADEEALAEV--VGPAKAETITDYYDE 623 >UniRef50_C1F4W9 UvrABC system protein C n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=UVRC_ACIC5 Length = 645 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 219/639 (34%), Positives = 334/639 (52%), Gaps = 49/639 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQI 63 D + ++T+ + PGVY +A G VIYVGKAK+L+ R+ SY ++ A+ KT +L+ + Sbjct: 1 MDLQEKIRTLPTGPGVYLYKNADGEVIYVGKAKNLRSRVRSYLLEASQANAKTGSLMREA 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 +D E EAL LE+N IK +PR+NVLLRDDK+YP++ L+ GD +P++ + R + Sbjct: 61 VDLDYITVGNEHEALALENNLIKQRKPRFNVLLRDDKTYPYVKLTLGDRYPKVFVTRRLR 120 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 Y+GPF G + L+ + F + C+ + R +R CLQY I RCLGPCV+ L Sbjct: 121 KDGAAYYGPFFPGNLAYRIVDLIHRSFLLPSCKVDLSRYHARACLQYYIKRCLGPCVKHL 180 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + E Y + V + FL G+ + L RM+ A+ +FE AA+ RD + + ++ EK Sbjct: 181 TTPEAYREAVRDAQWFLEGRGADLERSLEVRMQEAAAAEQFELAAKYRDLLVTLHQLQEK 240 Query: 243 QFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV-----PGGTELSEVV 296 Q V++ DD DV G ++ GM V++ +R GK++ R +F + G + EV+ Sbjct: 241 QRVASADDDDADVFGYHYENGMLAVNLFHMRGGKMVDRREFFWEELPEFMEEGAQEEEVL 300 Query: 297 ----------------------ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS 334 + Q Y++ +P I + N +D+ LA L+ Sbjct: 301 PAQAEGRGEVQVELRFEPGAFFSALLKQIYIE---QPYVPRSIYVPVNFADREALAGLLA 357 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTA-LASVLKLPEVK 393 E +I + RGD+ + LA NA + + + + L L L E+ Sbjct: 358 EQTHHRIELAVPQRGDKRSLVDLAGQNARQSYEQRFRVMQPNQKAIQEALQDALMLEELP 417 Query: 394 -RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK 452 R+ECFDISH G +TVAS VV++ +A+YR++ I ++ DD+A+M +VL RRY + Sbjct: 418 RRIECFDISHIQGAETVASMVVWENGAMKKADYRKFQIKTVSGVDDFASMREVLTRRYRR 477 Query: 453 AIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFF 511 I++ + +PDVILIDGG GQL A EL + + +AK E ++ Sbjct: 478 VIEEKQAMPDVILIDGGIGQLRAAAAALEELGQTTQT----VASIAKRE------EIIYL 527 Query: 512 -EPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQ 570 E E L SP LH++Q IRDESH AI HRK+R S L I GVG + R Sbjct: 528 YGHEDEPIVLERRSPVLHLVQRIRDESHRFAIAYHRKRREMRDRDSELLEIPGVGTRTRT 587 Query: 571 MLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 LL++ G L+G+R A VE + V + + AE I + Sbjct: 588 RLLEHFGSLRGVRKADVEALTAV--VPRPTAEAIAAHFQ 624 >UniRef50_A7VUD6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VUD6_9CLOT Length = 628 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 194/625 (31%), Positives = 312/625 (49%), Gaps = 32/625 (5%) Query: 1 MSDQF-DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEA 58 M ++ + + + PGVY M +A +IY+GKAK LK R+S YF K Sbjct: 1 MDEKRKALRTRAMALPAAPGVYLMKNASNEIIYIGKAKALKNRVSQYFGSPKNHPPKVRK 60 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH 118 +V+Q+ D +T +E EAL+LE + IK + P+YN+LL+DDK Y +I ++ + R+ Sbjct: 61 MVSQVDHFDYILTDSEFEALVLECSLIKQHTPKYNILLKDDKGYHYIKVTPKPYRRIFEA 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLG 176 + + EY GP+ + ++V++++ +KIF + C + R RPCL Y I +C Sbjct: 121 KQKLNDGAEYIGPYTSSFSVKQSVDEARKIFKLPTCSRKFPQEIGRGRPCLNYFIKQCCA 180 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 PC G +SEEEY V+ FL G + + +M A++NLEFE AARIRD+I AV Sbjct: 181 PC-RGKLSEEEYEGYVDEALEFLKGGSVVSVKDMTQQMNEAAENLEFERAARIRDRISAV 239 Query: 237 RRVTEKQFVSNTG-DDLD---VIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 +R+T KQ V T + D + A A ACV V G++ + + Sbjct: 240 KRITAKQKVVATKVREQDVVAMAQAAGAAAHACVVVFRFSGGRLCDQEEFML--GEIADG 297 Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRA 352 F+ Q+Y Q RT+P ++ LD + K L LSE AGR + + +G++A Sbjct: 298 KTTRAEFLQQYYAQ----RTVPPQVTLDGEVEGKEALRQWLSEKAGRSVKLTVPQKGEQA 353 Query: 353 RYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVAS 411 + + R NA+ L + + L L +L L + +E +DIS+ G VA Sbjct: 354 HLVDMCRRNASEKLAQQAGRTGREMGALDELGRLLGLAQPPEYIEAYDISNLAGSGNVAG 413 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-------IPDVIL 464 V F+ PL++ YR++ I G DDYA+M +V+ RR + + +PD+IL Sbjct: 414 MVAFENGRPLKSAYRKFKIKGFEGQDDYASMQEVISRRLQEYQEKKDTGEGFGRLPDLIL 473 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGGKG +A + V + L G+ K + +G ++ Sbjct: 474 LDGGKGHVAAVRPVLEAFGL-----QIPLFGMVKDDKHRTRA----IARDGGEIAINSSR 524 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 A ++ I+DE H AIG HR+ R + +SSL +I G+GP R + LLK ++ + Sbjct: 525 QAFTLVSQIQDEVHRFAIGYHRQTRKRTALSSSLTSIPGIGPSRAKALLKSFKTIKNIAQ 584 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLK 609 A ++E+ + P ++Q A+ ++ Sbjct: 585 AELKELEQAPSMNQPAAQAVYDYFH 609 >UniRef50_C8X3R4 Excinuclease ABC, C subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R4_DESRD Length = 636 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 233/624 (37%), Positives = 325/624 (52%), Gaps = 36/624 (5%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQQIDV 68 K PG Y M D G VIYVGKAK L+KRL+SYF+ + RKT ++ ++ I+ Sbjct: 5 RAKEYPDCPGTYLMKDERGRVIYVGKAKVLRKRLASYFQEPDRLPRKTRVMMDKVWSIET 64 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGE 127 T TE EA LLE++ IK ++PRYN++LRDDKSY L PRL+M R Sbjct: 65 LCTETEKEAFLLENSLIKKHRPRYNIILRDDKSYVLFKLDKRHPFPRLSMTRRVVQDGST 124 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEE 187 YFGPF + A RET LL ++FP+R+C+ + + NR RPCLQY IGRCLGPCV + +E Sbjct: 125 YFGPFTSAVAARETWKLLNRLFPLRKCKQTTFNNRVRPCLQYNIGRCLGPCVY-DIPRQE 183 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF-VS 246 Y + V V LFL+G+ ++L +L + M+ AS++L FE+AAR+RDQIQAV + E+Q V Sbjct: 184 YQEVVRQVELFLTGRSKELLRRLRADMQAASEDLRFEDAARLRDQIQAVEQTVEQQVAVL 243 Query: 247 NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG----------------- 289 G D DV+G+ G + +LF+RQG++L +S+F G Sbjct: 244 PGGKDRDVLGLGRTVGGVALGLLFVRQGQLLDQKSFFWAEEDGTDELGLQEETASAQSTA 303 Query: 290 -TELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPR 348 E EV+ +FV QFY S R +P I+L F + D +L D LSE G + + T Sbjct: 304 VEEAQEVLRSFVLQFY---SPGRYIPERIVLPFAMEDA-VLEDILSERRGGPVRLATAHG 359 Query: 349 GDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQ 407 + + LA TNA A + TV L L L L ++ R+E D SH G+ Sbjct: 360 PQERKLVSLAETNAVQAGDR---ARKTVEPPLERLQDRLGLSQLPERIEAVDASHFGGQG 416 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPG-DDYAAMNQVLRRRYGKAIDDSKIPDVILID 466 V VVF+ P + YR Y + DDYAA+ RRR PD+I++D Sbjct: 417 MVVGQVVFENGRPHKEAYRIYAFPELEGAADDYAALQGWARRRLRSG---PPWPDLIVVD 473 Query: 467 GGKGQLAQAKNVFAE-LDVSWDKNHPLLLGVAKGADRKAGLET-LFFEPEGEGFSLPPDS 524 GGKGQL + E + + L +AKG R LE +F +L P S Sbjct: 474 GGKGQLQAVQKGLNEGQEAGLAADSFALAALAKGERRGGELEERVFRPGRKNPVALRPGS 533 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 L ++QHIRD H + R+ R S LE + GVGP+ +L + G L+ + Sbjct: 534 AELLLLQHIRDSVHRFVLSRQRRTRRAKGLDSRLEELPGVGPRTAHLLWNHFGTLERMCQ 593 Query: 585 ASVEEIAKVPGISQGLAEKIFWSL 608 A+ E+ +PGI A ++ L Sbjct: 594 ATEAELEALPGIGAAKAAQLRRGL 617 >UniRef50_Q1IZB2 UvrABC system protein C n=4 Tax=Deinococcus RepID=UVRC_DEIGD Length = 616 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 224/616 (36%), Positives = 338/616 (54%), Gaps = 29/616 (4%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L + + PGVY GGT IY+GKA +L+ R++ +F++ S K AL +D Sbjct: 6 LPVLPASPGVYIFR-RGGTPIYIGKAVNLRSRVAQHFKAGGKSGKFTAL---ADSLDFIT 61 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 T E EAL+LE N IK ++P YNVLL+DDK YPF+ L+ + P L + R Y+G Sbjct: 62 TRNEVEALILEANLIKQHRPHYNVLLKDDKHYPFLKLTNEAFPMLVVTRRVLKDGASYYG 121 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 P+P+ AVR L+ +FP+R+ + + RPCL Y +GRCLGPCV+ + YAQ Sbjct: 122 PYPDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCVDAA-DPQAYAQ 180 Query: 191 QVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV--TEKQFVSNT 248 VE V+ L G+ V+ +L + M+ A++ +FE+AAR+RD++QAV ++ TE+ + Sbjct: 181 VVEDVKALLEGRAAPVIARLKADMQAAARAQDFEQAARLRDRVQAVEKLFGTEQHAYVSE 240 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGS-RSYFPKVPGGTELSEVVETFVGQFYLQG 307 DLD +GVA A V + +R G+V+G + + GG ++ EV+ FV +Y Q Sbjct: 241 ETDLDFLGVAQAGEYAMVQLFRLRGGRVVGRDKRFLVGAEGGADVGEVLGAFVQDYYTQA 300 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P ILL D + + LSE AGR++ ++T RGD+A +++A+ NAA L Sbjct: 301 TH---VPPLILLPAEFEDAPVWSAFLSERAGRRVEMRTPKRGDKAELVEMAQRNAAAGLE 357 Query: 368 SKLS--QQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 S+L+ ++ H L AL VL LP R+E +D S+ G V+ VVF+ R+E Sbjct: 358 SELALLERRGDHPGLDALREVLALPDRPWRIEGYDNSNLFGSNIVSGMVVFEGGRARRSE 417 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELD 483 +RR+ + G+ DDYAAM+Q + RR ++ D +PD+ILIDGG+GQ+ A Sbjct: 418 HRRFKVRGLDHPDDYAAMHQTITRRLTGSLADKLPLPDLILIDGGRGQVHA-----ALDA 472 Query: 484 VSWDKNHPLLLGVAKGADR---------KAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 + L+G+AK +R + LET G LP PAL V+ +R Sbjct: 473 LRAADVRVPLVGLAKREERIILPGRFGAQWWLETGTEVGVGGELLLPHTHPALRVLIGVR 532 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 DE H +A+ HR R + S + + G+G KRR LL++ L+ L A VE IA VP Sbjct: 533 DEVHHYAVSYHRTLRGEQMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAAPVERIAAVP 592 Query: 595 GISQGLAEKIFWSLKH 610 G++ A+ + L Sbjct: 593 GMNLRAAQSVKKFLAE 608 >UniRef50_C0GMH4 Excinuclease ABC, C subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMH4_9DELT Length = 641 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 223/615 (36%), Positives = 328/615 (53%), Gaps = 26/615 (4%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQI 63 + PGVY M D +IYVGKAK+L+ R+SSYFRS+ S KT ++ ++ Sbjct: 37 MQYQFNSSDFPRDPGVYLMKDEQNRIIYVGKAKNLRSRVSSYFRSSRDPSPKTRVMLGRV 96 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAK 122 Q+D T +E EALLLE + IK ++PRYN++LRDDK Y L +P L + R A+ Sbjct: 97 LQVDYITTTSEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLDKSRPYPALELTRSAR 156 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 YFGPF + A RET+ ++ ++F +R+C + +RNR RPCLQ+ I RC GPC Sbjct: 157 RDGSVYFGPFTSAAAARETMKVINRLFYLRKCGHKKFRNRVRPCLQHFIRRCPGPCCL-D 215 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 VS EEY++++ + +FLSG+ +++ + M+ AS+ L+FE+AA +RDQI+AV++ T+ Sbjct: 216 VSTEEYSREIRRLEMFLSGRSAELIKGMEKDMQEASRELDFEKAALLRDQIEAVKQTTKS 275 Query: 243 QFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV---PGGTELSEVVET 298 Q V G D+DV + G + VLF+RQGKVL S+++F EL + + + Sbjct: 276 QSVVFPGTGDMDVFAPVYVQGGMGIGVLFVRQGKVLDSKNFFWPEHHPENDQELQDTLAS 335 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 + QFY S +P +ILL + D LL L E K+ + L +A Sbjct: 336 LLSQFYGPDS---FIPEKILLPEKIHDPALLH-LLMEYRKGKVRLVGARGESLKGLLNIA 391 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 R N + + LA V+ L +R+EC D+SH G T V F A Sbjct: 392 RQNCEQHARDRRDAGTPF------LAGVMGLEREPERIECIDVSHHAGRNTRMGVVTFVA 445 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P + +YR YN+ ++PGDDY AM + ++RR + S PD++L+DGGKGQL + Sbjct: 446 GEPHKKDYRIYNLPSVSPGDDYQAMREFIKRR---SRSSSPWPDLLLVDGGKGQLGTVQK 502 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGL--ETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + + L +AK R G + ++ SL P SP L +Q IRD Sbjct: 503 ALQDAG---QEGLFALASIAKAETRARGGAQDQVYLPGRKYPLSLKPASPELLYLQRIRD 559 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H A+G R + S LE I G+GPK+ + L K+ G LQ + AS EE+ +VPG Sbjct: 560 EAHRFALGSMRNSLRRKSLQSDLEKIPGLGPKKVEALWKHFGSLQSILGASREELMQVPG 619 Query: 596 ISQGLAEKIFWSLKH 610 A + SLK Sbjct: 620 FGPETAGRTARSLKE 634 >UniRef50_A1ZTX2 Excinuclease ABC, C subunit n=4 Tax=Bacteroidetes RepID=A1ZTX2_9SPHI Length = 601 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 202/620 (32%), Positives = 330/620 (53%), Gaps = 42/620 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQ 64 +A LK + + GVY+ +D ++YVGKAK+LK R++SYF + +RKT LV QI Sbjct: 3 QIEATLKQLPTNAGVYKFFDKNNVLLYVGKAKNLKNRVNSYFNKSAQHNRKTINLVKQIA 62 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +D TV ++E +ALLLE+N IK YQP+YN+LL+DDK+YP+I ++ + P+L + R + Sbjct: 63 HVDYTVVNSEFDALLLENNLIKNYQPKYNILLKDDKTYPYILITNEPFPKLVVTRKLEKN 122 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGRCLGPCV 179 KG ++GPF N A+ + L+++++ IR C + + N+ + CL+Y +G C PC Sbjct: 123 KGRFYGPFTNLKAMNAIVELIRELYTIRTCNLHLSKENIQQNKFKLCLEYHLGNCQAPC- 181 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 EGL SEE+Y + +E+ + + G V T L +M ++ LEFE+A + ++ ++ + Sbjct: 182 EGLQSEEDYLKDLEHAKHIMKGNIHIVKTYLKEQMLAYAEKLEFEKAESQKQKLASLDKF 241 Query: 240 TEKQFVSNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 K V N D DV + D + V+ L I+ G ++ ++S E++ Sbjct: 242 QSKSLVVNPNKVIDTDVFSIISDENYSYVNFLKIKNGAIIHTQSIEIAKKLDETEEEILT 301 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 + F L+ + P EI+ + L+ ++ + GD+ + L L Sbjct: 302 --LVAFNLRDTIGSNAP-EIITNLPLN-----------ISDDRFTNTIPKIGDKKKLLSL 347 Query: 358 ARTNA----ATALTSKLSQQSTVHQR--LTALASVLKLPEVKR-MECFDISHTMGEQTVA 410 ++ N + +L +Q R L L VL++ E+ R +ECFD S+ G VA Sbjct: 348 SQKNVLYYKKEKIQQRLLRQGKDKSRVVLEELQQVLRMKELPRHIECFDNSNIQGIYPVA 407 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGK 469 S V F P + YR +NI + DD+A+M +++ RRY + + + +++P +I+IDGGK Sbjct: 408 SMVFFRNGFPYKKGYRHFNIKTVVGPDDFASMKEIVHRRYKRLLYEKAELPQLIVIDGGK 467 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL+ A ELD+ ++G+AK LE ++F + + SPAL + Sbjct: 468 GQLSAACEALKELDLYG---EITIIGIAKK------LEEIYFPEDSIPLHISKKSPALKL 518 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 +Q +RDE+H AI HR KR+ S LE IEGVG K LL++ + + AS +E Sbjct: 519 LQKVRDEAHRFAIEFHRNKRSNDSLHSELEAIEGVGEKTITSLLRHFKTVNNVAQASTQE 578 Query: 590 IAKVPGISQGLAEKIFWSLK 609 IAKV + + A I + Sbjct: 579 IAKV--VGKAKANLIRAYFE 596 >UniRef50_Q26GF0 Excinuclease ABC, C subunit n=5 Tax=cellular organisms RepID=Q26GF0_9BACT Length = 599 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 188/618 (30%), Positives = 323/618 (52%), Gaps = 41/618 (6%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + ++ + + PGVY+ YD ++YVGKAK+LKKR+SSYF N S + +++V +I I Sbjct: 6 LEVQIRILPTTPGVYQYYDKDHKLLYVGKAKNLKKRVSSYFTKNHDSYRIKSMVKKIVTI 65 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + V TE +ALLLE++ IK PRYN++LRDDK+YP++ + + PR+ + R Sbjct: 66 EHIVVETEMDALLLENSLIKNRNPRYNIMLRDDKTYPWLCIKKERFPRVFLTRRMIKDGS 125 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCE-----NSVYRNRSRPCLQYQIGRCLGPCVEG 181 EY+GPF + VR L L++ ++P+R C+ + + + + CL+Y IG C GPC E Sbjct: 126 EYYGPFSSVKTVRALLDLIKGLYPLRTCKYDLSADKINAGKYKVCLEYHIGNCAGPC-EN 184 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 L+SE YA+ ++ VR + G S+M + N++FE+A RI+++++ +++ Sbjct: 185 LMSETAYAENIDNVRNIVKGDYKNASKHFESQMMELASNMQFEDAQRIKEKLEILQKYQS 244 Query: 242 KQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 K V N+ D+DV + D A ++ L + G ++ S + K E++E + Sbjct: 245 KSTVVNSKITDVDVFSLISDETHAYINYLQLSHGAIVRSHTLEIKKKLEETDQELLEIAI 304 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 + + + E+ + F + G +I V GD+ + + L+ Sbjct: 305 IEL---RQRFNSQCKEVYVPFEV------------KLGDQIKVTIPQLGDKKKIVDLSLR 349 Query: 361 NAATALTSKLSQQS------TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 NA + V + + + + L+L E +ECFD S+ G VA+CV Sbjct: 350 NAKFYRQEQFKTIKIVDPDRHVKRLMAQMKADLRLDEEPVHIECFDNSNIQGTNPVAACV 409 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQL 472 VF P + +YR +NI + DD+A+M +V+ RRY + +++ +P ++++DGGKGQL Sbjct: 410 VFKNGKPSKKDYRNFNIKTVEGPDDFASMEEVVHRRYRRLLEEGEPLPQLVVVDGGKGQL 469 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 + L + ++G+AK LE LF+ + L S L VIQ Sbjct: 470 SSGLKAIDRLGLRGK---ITIIGIAK------RLEELFYPNDPVPLYLDKRSETLKVIQQ 520 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +R+E+H I HR KR+K + L+TI G+G K LL++ ++ ++ AS +E+ Sbjct: 521 MRNEAHRFGITHHRNKRSKQAIETELDTIPGIGEKTAVELLRHFRSVKRIKTASKKELED 580 Query: 593 VPGISQGLAEKIFWSLKH 610 + G+S+ A+KI K+ Sbjct: 581 IIGVSR--AQKIIDFYKN 596 >UniRef50_C9RQJ8 Excinuclease ABC, C subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQJ8_FIBSS Length = 623 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 202/619 (32%), Positives = 320/619 (51%), Gaps = 31/619 (5%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEA--LVAQI 63 + L + PGVY M +A G +IY+GKAK LK R+SSYF + + A ++ I Sbjct: 7 HIERRLAELPLLPGVYIMKNAQGKIIYIGKAKVLKNRVSSYFDGSDHAGHRAATLMLPYI 66 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAK 122 + I+ +T +ETEAL+LE N I+ + P+YNVLL+DDK +P++ S + PRL + R K Sbjct: 67 RDIEWIITESETEALILEANLIRKHTPKYNVLLKDDKHFPYLAFSVNEPFPRLFLSRSVK 126 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEG 181 Y+GP+ + +R+ + ++F IR+C+ + NR RPCL Y IGRC PC G Sbjct: 127 KDGCLYYGPYMSSRMIRQLQDIAARLFQIRECKLKLPLNRPVRPCLNYHIGRCGAPCA-G 185 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 LV+ EEY ++V ++ L GK D ++ M AS+ ++FE AA+ RD IQA++ + Sbjct: 186 LVTREEYQKKVAQTQMLLGGKRDDLIDLWEREMLEASERMDFETAAKKRDAIQALKATSA 245 Query: 242 KQF--VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 Q VS+ +DV+ + + MA + R G + G R Y + + +E+ Sbjct: 246 HQKTDVSDASLCVDVLSLKRNGTMAAAVIFEYRNGVLCGRRHYRLECKLEDDETEIFRQM 305 Query: 300 VGQFYLQGSQMRTLPGEIL----LDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 V Q+Y+ + +PGEI L ++S++ + +L+ K+ + RG++ +L Sbjct: 306 VVQWYMD---VEFIPGEIATDVPLPTDMSERLSIEQALASKTTHKVVLTNPQRGEKLGFL 362 Query: 356 KLARTNAATALTSKLSQQSTVHQ---RLTALASVLKLPEVK-RMECFDISHTMGEQTVAS 411 KLA NA L ++ + + L VL L + R+EC DISH G TVAS Sbjct: 363 KLASANADMILVEMRAEVQKYSEIDSSVFELQKVLGLKKTPFRIECVDISHLSGTNTVAS 422 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKG 470 V F P ++ YR++ I +T DD+A+M +V+ RR + ++ +PD+ + DGGKG Sbjct: 423 LVAFKNGRPDKSNYRKFIIKTVTGVDDFASMREVMTRRIRRLEEEGIPMPDLWVCDGGKG 482 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI 530 Q+ + EL L+G+AK LE + F + + L SPAL ++ Sbjct: 483 QVDATMQILKELG---HDKDLPLIGLAK------RLEEIVFPDDRKSIVLHRTSPALKLL 533 Query: 531 QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 590 Q+ RDE+H AI R KR K L+ GVG + R +L + +A +E+I Sbjct: 534 QNARDEAHRFAITYQRSKRKKDLEVEWLKM-PGVGHETRIKILSKYKSAEAFMDAPLEDI 592 Query: 591 AKVPGI--SQGLAEKIFWS 607 + G L E++ Sbjct: 593 IDLLGKVRGAKLREQVAEY 611 >UniRef50_C4FUE0 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUE0_9FIRM Length = 604 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 206/612 (33%), Positives = 329/612 (53%), Gaps = 32/612 (5%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 Q +A LK + PG Y M DA ++YVGKAK+LK R+ SYFR KT LV++I Sbjct: 16 QERIEAKLKLLPDLPGCYLMKDAADQILYVGKAKNLKNRVRSYFRGA-HDTKTTKLVSEI 74 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 ++ +T++ EALLLE N I+ Y+P +N+ L++ YP++ ++ + HP+L + Sbjct: 75 DHFEIIITNSNKEALLLEINLIQQYKPPFNIRLKEGTMYPYLKITKERHPQLIITSNVTK 134 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 G YFGPFPN A +T LL +++P+R+C +N R C Y +G+C+GPC + V Sbjct: 135 DGGLYFGPFPNVGAATQTQQLLHRVYPLRRCG----KNEKRACFYYHLGQCIGPC-DHEV 189 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +++ Y QQ++ ++ F +G ++TQL +M+ A++ L+FE+AA RDQ+Q + E+Q Sbjct: 190 TKDMYEQQIQKIKQFFNGDIQPIMTQLKDKMQAAAERLDFEQAADYRDQLQYIETTIERQ 249 Query: 244 FVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 + + D+ DV F G + V +RQG +L + P T+ E + TF+ + Sbjct: 250 IIMSQDYDNTDVFAYDFQRGWISIQVFMLRQGSILKREAAIY--PAYTDPDEELTTFIAR 307 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 FY + + + LP IL+ ++ DK LL+ +S I + T RG + L L N+ Sbjct: 308 FYQEENHL--LPKAILVPEDV-DKDLLSQVIS------IPISTPQRGKKKSMLDLCAKNS 358 Query: 363 ATALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 AL +L+ Q LA+ L +P +E FD S+ G V+ VV+ Sbjct: 359 QLALNERLNLLDIQAQQTRGVSEDLAAALGIPLAYHIEAFDHSNISGTGLVSGMVVYKEG 418 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKN 477 P R YR++ I +++A +V+RRRY + + ++ +P++IL+DGGK Q+ A+ Sbjct: 419 KPDRKSYRKFKIKESNQTNEFAHTQEVIRRRYSRLLREEQPLPNLILMDGGKVQVRAARQ 478 Query: 478 VFA-ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDE 536 V EL +S + G+ K + L E L SP H IQ I++E Sbjct: 479 VIEKELGLS-----IPVAGMVKDDKHRTAS--LMNGYSEELVELDRQSPVFHYIQRIQEE 531 Query: 537 SHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 596 H +AI HR+ R+K + S L+ I GVG R LLK+ L+ ++ AS+E+ AK+ G+ Sbjct: 532 VHRYAISYHRQVRSKQQFASKLDAIPGVGKVTRTKLLKHFKSLKAMKEASIEDYAKL-GV 590 Query: 597 SQGLAEKIFWSL 608 LAE+I L Sbjct: 591 RAELAERIIAYL 602 >UniRef50_C7H041 Excinuclease ABC subunit C n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H041_9FIRM Length = 626 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 216/630 (34%), Positives = 329/630 (52%), Gaps = 33/630 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 FD +A +K + PGVY D+ G VIYVGKA +LKKR+ SYF + SRK +V QI Sbjct: 2 FDIEANVKKLPEVPGVYLHKDSTGKVIYVGKANNLKKRVQSYFSKTVKSRKVAYMVRQIT 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 + + VT E EAL+LE N IK Y PRYNVLL DDK+YP+I +S + +PR+ R + Sbjct: 62 EFEYIVTANEKEALILECNLIKKYMPRYNVLLTDDKTYPYIKISEDEEYPRITKTRRIEK 121 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 +YFGP+ + +A E + LL KI+ +++C+ + + R CL Y IG+C G C+ G Sbjct: 122 DGAKYFGPYSDEFAANEIMDLLNKIYRLKKCKLQKFPDGMRACLNYHIGQCDGMCI-GKG 180 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + E+Y ++E + FL G+D ++ L +M+ AS + +E AA RD I + + + EKQ Sbjct: 181 NREDYLDRIEKAKDFLQGRDKSLIHTLRKKMQEASDGMLYESAAMYRDYITSAKSILEKQ 240 Query: 244 FVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 S+ G D+DV+ + V FIR GK G Y + ++E F+ Q Sbjct: 241 SASSVGMGDIDVLVPIVTDTAIKMLVFFIRDGKTCGREIYNMQQELAEGEEALLEGFIQQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 Y+QG+ P EI+L + L+ K LL + L E AG+K+ + RG + LK+A+ +A Sbjct: 301 NYVQGA---YFPDEIVLGYELNQKELLEELLHEFAGKKVYITCPVRGKKRELLKMAKKDA 357 Query: 363 ATALTSKLSQQSTVHQRLTALASVLK--LPEVK---------------RMECFDISHTMG 405 ++ +R L+ L L E+ +E +DIS+ G Sbjct: 358 EYLKGVIKTKDEASRERKKELSYKLGRILNEMNGGRYEYGFNDAGGEYTVEAYDISNING 417 Query: 406 EQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK----IPD 461 VA VVF P ++ YR++ I I DDY +M +VL RR+ + + + +PD Sbjct: 418 IDNVAGMVVFTGFAPEKSRYRKFKIKSIEGQDDYGSMREVLFRRFTRYKEGAPGFSDLPD 477 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSL- 520 +I +DGG+G + A +V LD+ ++G+AK + + + + L Sbjct: 478 IIFMDGGRGHVNAALDVLKYLDL-----EIPVIGMAKDDKHRTKELVYKVGDKFKVYPLA 532 Query: 521 PPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 D+ L + I++E H +AI H R + S LE IEGVGPK+R LLK G ++ Sbjct: 533 GSDNFMLAYVGRIQEEVHRYAISYHISLRDRSMTKSILENIEGVGPKKRAALLKKWGTIE 592 Query: 581 GLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + AS EE+ GI+ LA KI K+ Sbjct: 593 AIEKASAEELEATEGINLKLALKIKEFFKN 622 >UniRef50_O26541 UvrABC system protein C n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=UVRC_METTH Length = 579 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 222/599 (37%), Positives = 326/599 (54%), Gaps = 35/599 (5%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVT 71 + + GVY D V+YVGK+ ++KR+SSYFR + + ++ ++ I+ +T Sbjct: 8 EKLPDATGVYIFRDRDDRVLYVGKSISIRKRVSSYFRE-QENPRLRIMMRHLESIEYILT 66 Query: 72 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGP 131 E EAL+LE N IK Y+P YNV L+DDK YPFI ++ + +PR+ + R Y+GP Sbjct: 67 QNEKEALILESNLIKRYRPPYNVRLKDDKRYPFIKITDEEYPRVLIVRTIGRDSARYYGP 126 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 F + AVR TL L++ +F IR C PCL QI C PC +G +S E+Y + Sbjct: 127 FTDTGAVRRTLKLIKSLFRIRSCRRM-----DGPCLNSQIDLCYAPC-DGRISREDYREI 180 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD- 250 +E V LF G+ +V+ L M+ AS+ LEFE AARIRDQI+++R V E+Q S T Sbjct: 181 IEKVDLFFQGRYQEVIEVLEEEMKEASERLEFERAARIRDQIESIREVMERQHASFTDSI 240 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 D D++ + + V VL IR GK+ G + + G +E++E F+ Q+Y + Sbjct: 241 DQDIVALERGGDTSAVVVLQIRDGKITGKDDFILR--GSAPRTEILEAFLKQYY---AIP 295 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 R +P EIL + + D ++A+ LSEL G ++ + + G R L +A NA+ L Sbjct: 296 RRVPSEILTQYPVED-GVIAEWLSELRGEEVKIHSPEGGAGRRLLNIAWKNASVIL---- 350 Query: 371 SQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 Q+ V L L LKLPE+ RME DIS+ GE S VF P YRRY Sbjct: 351 KQKGRVRDALLQLKDDLKLPEIPRRMEGLDISNIAGESATGSVAVFIDGKPSSGSYRRYR 410 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 I DDYA M +++ RRY + + PD++LIDGGKGQL A V Sbjct: 411 I-SAQGPDDYAMMRELVERRYSS--PELRKPDLVLIDGGKGQLGVALEALKNCGV----- 462 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 H ++G+AK E ++ E D AL +++H+RDE+H A+ HR R Sbjct: 463 HVPVVGIAKKR------EEVYLPGLSEPV--DVDDGALQILRHLRDEAHRFAVKYHRTIR 514 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + S L+ I GVGP R++ LL++ G L G+R+ASVEE+A +PG+++ +AE+I Sbjct: 515 DRDSLESELDGIRGVGPVRKRALLEHFGSLDGVRDASVEELASIPGMTREVAERIHRHF 573 >UniRef50_C8WI08 Excinuclease ABC, C subunit n=3 Tax=Coriobacteriaceae RepID=C8WI08_EGGLE Length = 737 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 196/641 (30%), Positives = 321/641 (50%), Gaps = 46/641 (7%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + K L +V + PGVY D G VIYVGKAK L+ R+ Y K LV Sbjct: 57 AKLERIKEELNSVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVD 116 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAMHRG 120 QI D V E E+L+LE N I + P +N +DDKSYPFI L+ P + R Sbjct: 117 QIDSFDYIVVENEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTRE 176 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIR--QC-------------ENSVYRNRSRP 165 A +YFGP+ + A R+ + + +++ P+ C ++ + +RP Sbjct: 177 KHRADTKYFGPYTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARP 236 Query: 166 CLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEE 225 C +G G C G ++ E+Y V+ + FLSG+ + + +L + M+ A+ L+FE Sbjct: 237 CFDAHVGLGPGACCGG-ITPEDYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFER 295 Query: 226 AARIRDQIQAVRRVTEKQF-VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP 284 AARI+ +I + +T+KQ VS D DV+G+ + +A VHV +R+G+++ S + Sbjct: 296 AARIKARIDTINSLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVL 355 Query: 285 KVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSEL----AGRK 340 +++ F+ ++Y ++P E++L DK + L+E G K Sbjct: 356 DRGKDVPDDDLLHMFLLRYYD---ATTSIPHEVILRDEPEDKAAMEAWLTEKLASPYGAK 412 Query: 341 INVQTKPRGDRARYLKLARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEVK-RM 395 + + +G++A + +A TNA L + ++ L L S L L E R+ Sbjct: 413 VRITAPQKGEKAELVGMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRI 472 Query: 396 ECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITG-ITPGDDYAAMNQVLRRRY--GK 452 ECFDIS G TVAS VVF P + +YRR+ I + +D+ +M +V+ RRY + Sbjct: 473 ECFDISTIHGSYTVASMVVFTNGKPDKNQYRRFKIKTPLDEANDFLSMQEVMSRRYAPER 532 Query: 453 AIDD--SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLF 510 D+ PD+I++DGGK QL+ A +F + + + + G+AK E LF Sbjct: 533 MADERFGSKPDLIILDGGKPQLSAALEMFERMGI----DDIAMCGLAKRD------EELF 582 Query: 511 FEPEGE-GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRR 569 + LP S +L++++ +RDE+H AI HR+ R K S L+ + G+GP R+ Sbjct: 583 VPWQDTGPVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRK 642 Query: 570 QMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + LLK + L++A++EEI + + +AE+++ L+ Sbjct: 643 KALLKAFKSFKNLKSATLEEIKEARVVPVEVAEELYRVLQQ 683 >UniRef50_D1VGT9 Excinuclease ABC, C subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VGT9_9ACTO Length = 835 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 218/716 (30%), Positives = 323/716 (45%), Gaps = 123/716 (17%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF +T + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDPHGRVLYVGKAKNLRARLNNYFTDVFALHPRTRTM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V ++ TV TE EAL LE+ +IK Y PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VTTASSVEWTVVSTEVEALALEYTWIKEYDPRFNVRYRDDKSYPSLAVTLQEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSTGVFKRAGQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V+ +E+ Q V+ F++G+ + L +L M A+ ++E AAR+RD A Sbjct: 181 APCV-GRVTPDEHRQIVDDFCDFMAGQTGRFLRRLEDEMRAAADAQDYERAARLRDDAGA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DV+ A D A V V ++R G+V G R + ++ Sbjct: 240 LRRAMEKQAVVLADGTDADVVAFAQDELEAAVQVFYVRGGRVRGQRGWVVDKLADVTTAD 299 Query: 295 VVETFVGQFYLQGSQMRTL-----------PGEILLDFNLSDKTLLADSLSELAGRKI-- 341 +VE F+ Q YL + + PG + A L + Sbjct: 300 LVEQFLTQEYLGDKDLGDIELGDLSPARPGPGATAAPAETAGAEDAAGVLRRGRPSRAGA 359 Query: 342 -----------------NVQTKP---------------RGDR-----------ARYLKLA 358 V RG R ++ Sbjct: 360 APDAVRGVGGRHADIPREVLVPELPTDADAVGELLARYRGGRVEVRVPQRGDKRTLMETV 419 Query: 359 RTNAATALTSKLSQQSTVHQ----RLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 NA AL +++++ L L L L E R+ECFD+SHT G+ VAS V Sbjct: 420 ERNAKQALVLHRTKRASDLTARSLALAELQETLGLAEAPLRIECFDVSHTQGQDVVASMV 479 Query: 414 VFDANGPLRAEYRRYNITGITP-----GDDYAAMNQVLRRRYGKAIDD------------ 456 VF+ ++EYRR+ I G DD A+M + + RR+ + + + Sbjct: 480 VFEDGVARKSEYRRFTIRGAARRDGNEQDDTASMYETVSRRFSRYLAELSRTGELPGTDQ 539 Query: 457 --------------------------------SKIPDVILIDGGKGQLAQAKNVFAELDV 484 + P+++++DGG Q+A A A+L + Sbjct: 540 DAPADGSAGAAAGAEGTDGPEPLVVDGRPRRFAYPPNLVVVDGGPPQVAAAARALADLGI 599 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 L G+AK LE ++ + + LP S AL+++Q +RDE+H AI Sbjct: 600 DAGPGGVALCGLAK------RLEEVWLPDDPDPVILPRTSEALYLLQRVRDEAHRFAITF 653 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 HR+KR+ +S L+ + G+G RR+ LLK G + LR AS EEI+ VPGI Sbjct: 654 HRQKRSASMTSSLLDGVPGLGETRRKALLKTFGSVAKLRAASAEEISTVPGIGPRT 709 >UniRef50_Q6SI31 Excinuclease ABC, C subunit n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI31_9BACT Length = 622 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 213/635 (33%), Positives = 338/635 (53%), Gaps = 44/635 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M Q D K + T+ QPGVY ++ G IYVGKA L+ R+ SY ++ AS + +AL+ Sbjct: 1 MPIQ-DLKVQISTLPEQPGVYLYFNGAGDTIYVGKASVLRDRVRSYLSAHGASPRIDALL 59 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 ++ +++ VT + EAL LE+N IK P+YNVLLRDDK+YP++ L+ + PR+ + R Sbjct: 60 DDVESLEIIVTDSVAEALALENNLIKHRAPKYNVLLRDDKNYPYLQLTTNEAFPRVLVSR 119 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + Y GPF R+T+ L ++F IR C + R RPCL+Y I RCL PCV Sbjct: 120 RVQRDGAFYAGPFLPTALARKTMLLTHRLFGIRSCNEVITGRRDRPCLEYDIKRCLAPCV 179 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 + S+E YA+ VE+ R+FL G++ ++L L SRM A++N FE+AA RD I+ ++ + Sbjct: 180 ANVCSQERYAEAVEHTRMFLEGRNHELLNTLTSRMTQAAKNEHFEQAAEWRDAIRTIKAL 239 Query: 240 TEKQ--FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE--V 295 +Q T D D G+ +H+ +R+G+V+ V + E + Sbjct: 240 RHRQQKMSLPTLGDRDAFGMRLGPAGVVIHIFQMRRGRVIDRIELVADVEELRDNREEYI 299 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 V+ V QFY + R P E+LL + D + + LSE A +K+++ RG++ L Sbjct: 300 VQVAVQQFY----EARPAPPEVLLPTIIDDLEAVEEWLSERAKKKVHLSVPKRGNKRALL 355 Query: 356 KLARTNAATALTSKLSQQ-STVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCV 413 +LA NA ++ S++ + H + L L L + R+ECFDIS G TV + V Sbjct: 356 ELASRNATIGYKARYSEEVVSHHAAMEILRVELDLATSLHRIECFDISTIQGSDTVGAMV 415 Query: 414 VFDANGPLRAEYRRYNITGI-------------------TPGDDYAAMNQVLRRRYGKAI 454 V + +R+ YR++ I G+ DD++AM++++ RRY + + Sbjct: 416 VCENGRMMRSAYRKFKIRGLVKGQQSIHRSSSSGLGSVVGKPDDFSAMHEIVFRRYRRLL 475 Query: 455 DD-SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEP 513 ++ PD+I+IDGGKGQL+ + EL +S +G+ K E L Sbjct: 476 EEGGPFPDLIVIDGGKGQLSASYAALEELGLSNLIA----VGLVKKK------EVLVVRD 525 Query: 514 EGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLL 573 + +LP + AL ++Q IRDE+H A+ HR+ R S+L++I GVG +RR++LL Sbjct: 526 RPDPITLPSANEALLLLQRIRDEAHRCAVTFHRRTRTARHLRSALDSIPGVGLQRRRILL 585 Query: 574 KYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G + G+R AS EE+ V + +A+ + Sbjct: 586 TRFGSVAGVRRASREELMTV--VGARVADAVLSYF 618 >UniRef50_B5YHU3 Excinuclease ABC, C subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHU3_THEYD Length = 589 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 213/601 (35%), Positives = 318/601 (52%), Gaps = 22/601 (3%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L TV S PGVY D+ G V+YVGKAK+L+ RL SYF+S+ + +V I+ V Sbjct: 4 LNTVPSLPGVYLFKDSKGKVLYVGKAKNLRNRLKSYFQSDDLDPRKSKMVKLIKDFSYIV 63 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 T E EAL+LE N IK ++P +NVLLRDDKSYP++ ++ + P++ + R K YF Sbjct: 64 TSNEFEALVLEANLIKQHKPSFNVLLRDDKSYPYLRITVVEEWPKIDVVRKPKKDGNLYF 123 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+ ++ E L+ +++ FPIR C+ + RPC+QYQ+ RC PC G +S E+Y Sbjct: 124 GPYVPAQSMWEALSFIRRNFPIRTCKYRL-NKPIRPCVQYQMKRCPAPCA-GFISREDYM 181 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + V V LFL G+ ++L L +M+ S L+FE AA+IRDQI+ + ++ +Q V + Sbjct: 182 KGVNEVVLFLKGQKTELLNILYEKMQKLSHELKFEAAAKIRDQIRRLEKIFTQQRVVSQT 241 Query: 250 -DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 DD+DVIGV + V+ LF+R G ++GS + K E++ + Y + + Sbjct: 242 LDDMDVIGVYIENSKISVNTLFVRNGLLVGSNDWTVKKAFYESEGELIHAVIEALYSKEA 301 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 + P I+L+ T + + L E G + ++T + L +A NA L S Sbjct: 302 LIP--PPIIVLENLPESLTEIKEWLKEKRGDFVELKTPSLEEEKALLDMALNNAKIHLQS 359 Query: 369 KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 K+S + L L L L E+ ++ FD+S G +V S V + + YR Sbjct: 360 KIS---PLETSLKELKQRLNLSEIPSKIGAFDVSTLFGSYSVGSFVYWQDGFFDKNLYRH 416 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWD 487 I I DDY+AM +++ R K + PD+ILIDGG G L A V EL Sbjct: 417 LRIKEIQGIDDYSAMKEIVHRVVKKFNAELPEPDLILIDGGLGHLNAAIKVINEL----- 471 Query: 488 KNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 547 K + +AK DR L F +G L P+ +++ IR+E+H AI H+K Sbjct: 472 KEKLNVFAIAKDPDR------LIFP-DGRELVLEDKKPSSLLLKKIRNEAHRFAISYHKK 524 Query: 548 KRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 R K S LE I+G+G KRR LLK+ G + ++ A+VEEIA + G + LA K+ Sbjct: 525 LRKKATFESLLEKIQGIGKKRRLTLLKHFGSISKIKAATVEEIASLQGFNLRLAGKVIEE 584 Query: 608 L 608 L Sbjct: 585 L 585 >UniRef50_Q1MQH2 UvrABC system protein C n=3 Tax=Desulfovibrionaceae RepID=UVRC_LAWIP Length = 621 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 208/629 (33%), Positives = 332/629 (52%), Gaps = 42/629 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQI 66 + ++ + PGVY D+ G +IYVGKA++L+KR+ SYFR + + KT+A++ + Sbjct: 3 RPHPSSIPTTPGVYLYKDSQGRIIYVGKARNLRKRVLSYFRDGLVITPKTKAMMNHANLL 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAK 125 + T+TE EALLLE + IK ++PRYN++LRDDK Y + PRL + R + Sbjct: 63 ETISTNTEKEALLLEASLIKKHRPRYNIVLRDDKQYLLFRIQKGIPFPRLEIVRQSYKDN 122 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGPF +G +VR+T + KIFP+R+C + V+ NR RPCL + + +CL PC E V Sbjct: 123 AVYFGPFTSGTSVRDTWKFIHKIFPLRRCSDKVFNNRIRPCLYFYLQQCLAPCTE-EVDP 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 ++YA ++ V LFLSGK +++ L M AS+ LEFE+AA +RDQIQA++ E+Q V Sbjct: 182 KDYAVLIQKVELFLSGKSKELVELLQKDMLYASEALEFEKAATLRDQIQAIKHTIERQSV 241 Query: 246 S-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 G D+DVIG+A + LF+R+GK+L R++F + E++ +F+ QFY Sbjct: 242 VLPEGGDMDVIGIAVVNNGLALGFLFVREGKLLDGRTFFWPGLELDDGPELLGSFLSQFY 301 Query: 305 LQGSQMRTLPGEILLDFNLSDK-----------TLLADSLSELAGRKINVQTKPRGDRAR 353 S + ++P I++ + L L ++ + ++ + Sbjct: 302 ---SPISSIPPRIIVPWLPESTNNKDEISEDTFETLKYVLEDIRNSTVRIEVPKNIIESN 358 Query: 354 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASC 412 + +A TNA A+ +KL + LA V + R+EC D+SH G T Sbjct: 359 LVDIAVTNAREAVQTKLGE-----PMSAKLAKVFHTDKPIFRIECVDVSHISGTNTRVGM 413 Query: 413 VVFDANGPLRAEYRRYNITG----ITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGG 468 VVF+ + PL+ +YR Y+ T GDDYAA+ +RR D++LIDGG Sbjct: 414 VVFEDSQPLKNDYRIYSTTEDNSPFIKGDDYAALASWAKRRIQSG---PPWADLVLIDGG 470 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAK------GADRKAG--LETLFFEPEGEGFSL 520 KGQ+ + VF E + + +L G+AK DR+AG + +F +L Sbjct: 471 KGQINAVQRVFNEHHLK---DVFILAGIAKARNEEGRVDRRAGNIGDKIFVVGRMNPLTL 527 Query: 521 PPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 SP L +Q++RD +H+ +G HRK R L I G+G ++L + ++ Sbjct: 528 KEGSPELLFLQYVRDTAHNFVLGKHRKARKNTALLGELLRIPGIGQATAKLLWSHFKTVE 587 Query: 581 GLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + A+++++ +PGI + A + L+ Sbjct: 588 AMTCATIKDLEAIPGIGEAKARMLAERLQ 616 >UniRef50_D1PLG8 Excinuclease ABC subunit C n=3 Tax=Ruminococcaceae RepID=D1PLG8_9FIRM Length = 616 Score = 573 bits (1476), Expect = e-162, Method: Composition-based stats. Identities = 192/625 (30%), Positives = 306/625 (48%), Gaps = 31/625 (4%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQ 62 + + + PGVY + D T+IY+GKAK LK R+S YFR K ++A Sbjct: 3 KAELYRKACMLPLLPGVYIIRDKSDTIIYIGKAKRLKTRVSQYFREGVPHDAKVTQMIAH 62 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 DV V +E EAL+LE + IK + P+YN+LL+DDK Y ++ ++ PR++ Sbjct: 63 AFTFDVIVCQSEFEALVLEASQIKAHTPKYNILLKDDKGYSYVKVTKGPWPRISAALQKD 122 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVE 180 +Y GPF + +AVRE + + Q F + +C R + RPCL IG+C+ C Sbjct: 123 DDGADYIGPFTSSFAVREMVEMAQDCFLLPRCNREFPRDFGKGRPCLNAHIGKCMAVC-S 181 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G +S E Y + V+ + ++ QL +ME AS+ L+FE AA +RDQIQA+ RV Sbjct: 182 GKISCEAYNEAVQGALRMIRYGKKDIVKQLREKMEAASERLDFETAALLRDQIQAIERVA 241 Query: 241 EKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 Q V GD ++DVI +A C VL R G++ R + E +V E F Sbjct: 242 AGQKVVMDGDTEMDVIALAGTTRAVCAAVLRYRDGRLTDKREFVFHDTTDIE--QVREEF 299 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+YL G T+P I +D +D L ++L++ G K+ + RGD A+ + +A Sbjct: 300 LPQYYLDGE---TIPKIIAVDKLPADAEALNEALNQTRGSKVELYVPQRGDVAKLVTMAY 356 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDAN 418 TNA L + + + + L A +L L R +E +DIS+ +V VVF Sbjct: 357 TNAVERLGRESGRYTREEKLLEEAAQMLGLKAPPRVIESYDISNWGDGSSVCGMVVFKDG 416 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRR---YGKAIDDSKI----------PDVILI 465 P R+ YRR+ + + DDYA++ + L RR Y A K PD++LI Sbjct: 417 KPHRSGYRRFKMKTVAGTDDYASLAETLSRRAAEYEAARRGEKPDGPQNQFATLPDLLLI 476 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGG+GQ+ K + H G+ K + + G ++ + Sbjct: 477 DGGRGQVGAVKQALKGTAL----EHVPTFGMVKDDHHRTRA---IVDDAGGEIAINRNRN 529 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 + +I+DE+H +A ++ K ++L + GVG K LL + + ++ A Sbjct: 530 IFTFVTNIQDETHRYANDYRKRAMKKRSYAATLTALPGVGEKTSAALLAHFKTVAAVKAA 589 Query: 586 SVEEIAKVPGISQGLAEKIFWSLKH 610 S+ ++ +V GIS AEK++ +L++ Sbjct: 590 SISDLEEVKGISHAKAEKLYNALRN 614 >UniRef50_Q11YP9 UvrABC system protein C n=3 Tax=Bacteroidetes RepID=UVRC_CYTH3 Length = 596 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 192/612 (31%), Positives = 319/612 (52%), Gaps = 36/612 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M ++ D ++ LK + S PGVYR Y +IYVGKAK L+KR+++YF +KT ++ Sbjct: 1 MLEKEDIRSLLKELPSSPGVYRFYSIEKELIYVGKAKSLRKRVANYFTNKKNLDQKTRSM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V +I + T+ ++E EALLLE+N IK +P+YNVLLRDDK+YPFI LS P L R Sbjct: 61 VRKIYHAEYTLVNSEYEALLLENNLIKENKPKYNVLLRDDKTYPFICLSSADFPTLTTTR 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGRC 174 KGEYFGP+ +G A+ + L+K F IR C+ ++ + ++ + CL+Y IG C Sbjct: 121 KIDKKKGEYFGPYTSGRAMHSLVESLRKTFFIRTCDLNLTKQNIDAHKFKVCLEYHIGNC 180 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 GPC EG +E+Y + VR L G V +M +A+++++FE+A +++ Sbjct: 181 KGPC-EGKQEKEDYDVSIIQVRNILKGNFSSVKKYYQEKMLSAAEDMQFEKAQFFKERYN 239 Query: 235 AVRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 +V + + + N ++L+V + A V+ + I G ++ +R+ K Sbjct: 240 SVLGLEKSSLIVNPDINNLEVYTIVKRLNRASVNFMSILHGSIIKARTIEMKAVLDETEE 299 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 E++ + + + +G EI+ + L + V RGD+ + Sbjct: 300 ELLMHALFEIHEEGWDST---KEIICNIELP-----------ILSTYCKVSIPQRGDKKK 345 Query: 354 YLKLARTNAATALTSK--LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVA 410 + L+ NA LT ++ + L L + L L E+ +ECFD S+ G VA Sbjct: 346 LIDLSLKNAWHTLTRYDDQKKEKPEIRVLKTLQADLSLKELPAHIECFDNSNIQGTNPVA 405 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGK 469 + V + P + +YR +NI + +D+A+M +++ RRY + ++ P +I+IDGGK Sbjct: 406 AMVCYKNGKPSKKDYRHFNIKTVEGPNDFASMYEIVYRRYKRMGEEGLPFPTLIIIDGGK 465 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 GQL+ A +L++ ++ +AK LE LFF + + L S +L + Sbjct: 466 GQLSFACQALKDLNIYG---QIPIVSIAKN------LEELFFPGDNDPLYLDKKSESLKL 516 Query: 530 IQHIRDESHDHAIGGHRKKRAKVK-NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 IQ IRDE+H AI HR+KR+K + E + G+GP + LL + ++ ++ AS+E Sbjct: 517 IQQIRDETHRFAITFHRQKRSKDALLKTEFENLVGIGPGTVKKLLTHFKTVKRIKEASIE 576 Query: 589 EIAKVPGISQGL 600 ++ V G S+ Sbjct: 577 QLTPVIGNSKAT 588 >UniRef50_D2ML33 Excinuclease ABC, C subunit n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML33_9BACT Length = 583 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 194/592 (32%), Positives = 327/592 (55%), Gaps = 14/592 (2%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 82 M GGT +Y+GKAK+L+ R+ SYF+ + LV ++ ID VT E+EAL +E+ Sbjct: 1 MKGPGGTPVYIGKAKNLRARVMSYFQRGSDRGQIPYLVREVDSIDYVVTEGESEALFIEN 60 Query: 83 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 141 + IK ++P+YN+ L+DDK++ + LS G+ PRL+ R + YFGPF +G ++ T Sbjct: 61 SLIKRHKPKYNIRLKDDKTFSSLRLSVGERFPRLSRTRRIRDDGALYFGPFASGKFLKST 120 Query: 142 LALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLS 200 + L+ ++FP+R C S + +RPCL Y + C GPC G +SEE+Y + V FL Sbjct: 121 VNLVHRLFPLRDCTQSKFERHSTRPCLNYFMKLCSGPCA-GKISEEDYGELVSQATSFLR 179 Query: 201 GKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG-DDLDVIGVAF 259 G+ +++ + ME AS++ +E AA RDQ+ +++ E + V+++ +D+D++G Sbjct: 180 GERKKLVRMIREMMERASEDGRYENAAYYRDQLVSLKENAEIEKVTSSRFEDMDIMGFYR 239 Query: 260 DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILL 319 D+ VL R G V+ + K P G + +E V F+G+FY +P +LL Sbjct: 240 DSENYEFTVLLSRGGSVVDKLDFSVKSPHG-DEAECVREFLGRFYFSDH---YIPKRVLL 295 Query: 320 DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQR 379 ++ D+ ++ L+E G+++ V+T RG ++ ++ A NA + K +++ Sbjct: 296 PLSIRDREGYSEWLTEKKGKRVYVETPRRGPKSELVRFAMKNARESFARKAEEKAEQGTL 355 Query: 380 LTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDD 438 L + + V +ECFDIS+ G QTVAS V F P R YR+Y IT DD Sbjct: 356 LRGIRKSAGITRVPYAIECFDISNIQGRQTVASLVRFRNARPERDRYRKYRITATKGQDD 415 Query: 439 YAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 + +M +V+ RR + +D+ +PD+ILIDGGKGQL A + V ++ L +A Sbjct: 416 FRSMYEVVYRRALRVAEDNWDLPDLILIDGGKGQLNAAYAALRDCGV---QDEVDLASIA 472 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 K R +G++ ++ +GE + ++ + +RDE+H AI HR R + S Sbjct: 473 KTEGR-SGVDRIYVHGKGEPCDFSSNKKGIYFLMRVRDEAHRFAITYHRGLRKEKTLASQ 531 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ + G+G KR+ +LL + G ++ ++ A+ EE+A V G+++ A I L+ Sbjct: 532 MDGVPGIGKKRKFLLLNHFGSVEKIKGATAEELAYVKGMTKQAARNIKEFLR 583 >UniRef50_B2RM62 UvrABC system protein C n=4 Tax=Bacteroidetes RepID=UVRC_PORG3 Length = 600 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 198/623 (31%), Positives = 319/623 (51%), Gaps = 39/623 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M + + L T+ +PG Y+ +D G VIYVGKAK+L++R+SSYF A RKT LV Sbjct: 1 MMTRDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILV 60 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 QI+ I V +E +ALLLE++ IK YQPRYNVLL+D K+YP I + + PR+ R Sbjct: 61 RQIRSIKYIVVDSEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRD 120 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSV-----YRNRSRPCLQYQIGRCL 175 K EYFGP+P + L L+++I+PIR C+ + + R R CLQY I +C Sbjct: 121 IKKDGSEYFGPYPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCK 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC+ G + EY V +R L G +++ RM+ S+ L FEEA +++I+ Sbjct: 181 GPCI-GNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQAYSEELRFEEAQICKERIEL 239 Query: 236 VRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + R K V D++DV D A ++ + I G + + + E Sbjct: 240 LERYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEE 299 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 ++ + + + + EI+L F+ G I RGD+ + Sbjct: 300 LLAAAITEL---RQRFESNAHEIVLPFDTGW----------QTGESITTTIPRRGDKRKL 346 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTAL------ASVLKLPEVK-RMECFDISHTMGEQ 407 L+L+ N A KL + ++ AL L L +ECFD S+ G Sbjct: 347 LELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTS 406 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILID 466 VA+CVVF P + +YR++++ + +D+A+M +++ R Y + +++ +PD+I++D Sbjct: 407 PVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYTRLTEENLPLPDLIVVD 466 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 GGKGQL+ A +L + ++G+A LE +FF + L S Sbjct: 467 GGKGQLSAAYETLDKLGLIGK---IPIIGLA------ERLEEIFFPKDPVPLILDKKSET 517 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L VIQH+RDE+H IG HR R+K + S L+ I+G+G K ++ LL++ ++ +R+A Sbjct: 518 LKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAE 577 Query: 587 VEEIAKVPGISQGLAEKIFWSLK 609 EE++ + I + A+ ++ L+ Sbjct: 578 EEELSAL--IGRNKAKLLYEGLR 598 >UniRef50_C7LTD0 Excinuclease ABC, C subunit n=2 Tax=Desulfovibrionales RepID=C7LTD0_DESBD Length = 605 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 218/601 (36%), Positives = 327/601 (54%), Gaps = 26/601 (4%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEALVAQIQQI 66 + L + + PGVY M +A G +IYVGKAK L++RL+SYF+ + K ++ +++ I Sbjct: 4 RKILPSFPTCPGVYLMKNATGRIIYVGKAKHLRRRLASYFQPEHRLAPKVRVMMTRVETI 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 D T TE EALLLE + IK ++P+YN++LRDDK Y LS P L + R Sbjct: 64 DFLCTSTEKEALLLEASLIKKHRPKYNIVLRDDKQYVLFCLSRNHPFPALRLTRKVLRDG 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGPF + + RET ++ ++FP+R+C ++V+ NR+RPCLQY IGRCLGPC VSE Sbjct: 124 SVYFGPFTSALSARETKRVIDRLFPLRKCRDTVFSNRTRPCLQYHIGRCLGPCCL-PVSE 182 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF- 244 EEY Q V V LFLSGK D+++ L +M S L+FE AAR+RD I+A+R E+Q Sbjct: 183 EEYRQVVRRVELFLSGKSDELMAGLHDQMMRLSDALDFEGAARLRDSIRALRETVERQAA 242 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY-FPKVPGGTELSE--VVETFVG 301 V + G DLDVIGV A + ++F+RQG+++ +++ F T +E + ++F+ Sbjct: 243 VLSDGRDLDVIGVHGHENGAALAIVFVRQGRIIDGQAFWFADAAVDTPEAEAGLTDSFLM 302 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y + R +P I+ F D L D+L+++ G + +V R + +A N Sbjct: 303 QYY---NAERFIPARIITAFGSQDP-ALEDALADMRGGRASVAKARGDQERRLVDIATAN 358 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGP 420 A + +Q LA VL + EV+R+EC D SH GE VVF Sbjct: 359 AK----AHALRQRRTIPTRAELAGVLGVEGEVERIECVDASHIQGEGMRVGMVVFVDGRE 414 Query: 421 LRAEYRRYNITGITP-GDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 ++ YR Y+ + DDY A+ RR PD++LIDGGKGQL + Sbjct: 415 EKSAYRVYSFPELEGTADDYLALASFAARRAKSG---PPWPDLLLIDGGKGQLGAVERAM 471 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAG--LETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 AE +S L +AKG R+AG + +F +L P SP L +QH+RD + Sbjct: 472 AENGLSA----VPLASIAKGVSRRAGELGDVIFRPGRKNPLNLRPGSPELLFLQHVRDTA 527 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H I R+ + + +S L+ + G+GPK ++L + +Q + A +E++A +PG Sbjct: 528 HRFVISRLRRHKRAAQLSSDLDNLPGIGPKTARLLWDHFDSVQAMTQARIEDLAALPGFG 587 Query: 598 Q 598 Sbjct: 588 P 588 >UniRef50_B0MPX2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPX2_9FIRM Length = 585 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 176/597 (29%), Positives = 309/597 (51%), Gaps = 23/597 (3%) Query: 23 MYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTVTHTETEALLLE 81 M D G +IYVGKAK LK R+++YF + + KT LV I D VT +E +AL+LE Sbjct: 1 MKDKTGRIIYVGKAKALKNRVTTYFHALESHNAKTRKLVENIYDFDFIVTPSELDALVLE 60 Query: 82 HNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 141 + IK Y P+YN+LL+DDK Y +I ++ + +PR++ EY GPF +G+ ++ Sbjct: 61 CSLIKQYNPKYNILLKDDKGYNYIKITKEPYPRISYALNCNDKNAEYLGPFTSGFTAKQA 120 Query: 142 LALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFL 199 + + +IF C R + RPCL Y I RC+G C G + ++EY + ++ Sbjct: 121 VDEVNRIFMFPSCHKVFPRDFRKERPCLNYHIKRCMGVCT-GKIKQDEYNSLIHSAIEYM 179 Query: 200 SGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD-DLDVIGVA 258 + +L +M AS+NLEFE+AA++RD+I A+ ++ + Q + + D DV+ +A Sbjct: 180 QNGSKASVERLTEQMYEASENLEFEKAAKLRDRINAIEKMKDGQDIFSDKTYDFDVVALA 239 Query: 259 FDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEIL 318 + +A + V+ R G++ ++F + ++ F+ ++Y ++ +P +I Sbjct: 240 QNVELASIAVMCYRGGRITDKMNFFI--GDEYDPGQMRSDFLVEYYS--ARTDAIPKQIY 295 Query: 319 LDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQ 378 +D + D +L + S L G K+ V RG+ + LA+ NA+ L+ K+ + Sbjct: 296 IDKEMEDSAILEEYFSALCGHKVTVTVAQRGEGLSRVLLAKQNASEYLSMKVGRTVKEIN 355 Query: 379 RLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGD 437 L LA +L LP++ +E +DIS+ + V +V+ P +A YR++ I + + Sbjct: 356 ALEDLAKLLGLPKIPTVIESYDISNLGEDSRVGGMIVYRNGRPYKAGYRKFTIKNVIGQN 415 Query: 438 DYAAMNQVLRRRYGKAIDDS----KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLL 493 DYA M +VL+RR + +D +PD+IL+DGGKG + + V ++VS L Sbjct: 416 DYACMQEVLQRRIQRYLDGDESFAPLPDLILLDGGKGHVHAVQQVLDSMNVS-----IPL 470 Query: 494 LGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVK 553 G+ K + +GE + + ++ +I+DE H ++ ++ K Sbjct: 471 YGLVKDDKHRTRA----IAAQGEEIQINANRKLFSLMTNIQDEVHRFSLSFQQQTHKKKT 526 Query: 554 NTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 L I+G+G + L+K+ Q L++AS +EIA V + + A++I+ +K Sbjct: 527 YELELTKIKGIGEAKALALIKHFKTKQALKDASPDEIASVAKVKEEKAKEIYDFIKE 583 >UniRef50_UPI0001C3237F excinuclease ABC, C subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3237F Length = 647 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 218/626 (34%), Positives = 330/626 (52%), Gaps = 40/626 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + + QPGVY +A TVIYVGKAK +KKR++S+F + ++ L+ I Sbjct: 29 QRLAEQRRALPDQPGVYLFRNAKSTVIYVGKAKSIKKRVASHFSNPS-TQMGRDLLPMID 87 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 +I+ V TE EALL E N+IK Y+PR+N+ LRDDKSYP+I +S + PR+ R Sbjct: 88 RIESLVVSTEAEALLAEQNFIKQYKPRFNIRLRDDKSYPYIGISLDEDFPRVYFTRERHR 147 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGL 182 + YFGP+ N VRETL LL KIF R C+ R PCL Y I RC PCV+ Sbjct: 148 RERAYFGPYSNAKRVRETLDLLGKIFLFRSCDGPTPGRRSGSPCLDYYIKRCEAPCVD-Y 206 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 V++E Y ++ V FLSG+ + + + M+ A+ FE+AAR R++++++R + E+ Sbjct: 207 VTKEHYRTSIDGVIDFLSGRYRAIEAAIEANMKDAAAEQRFEDAARERNRLRSIRSLLER 266 Query: 243 QFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V+N +G LD I +A + A V IR G + + ++ G +L V E F+ Sbjct: 267 QRVTNASGGTLDAIAIAVEGNDANAQVFQIRDGVLSDRQGFYLDNQAGDDLPAVAEAFLL 326 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS-ELAGRKINVQTKPRGDRARYLKLART 360 Q+Y +P +++ + + + E G + ++ RGD+ R L+LA Sbjct: 327 QYYGSSLM---IPPLLVVQREVGEAAQTIAAALAERRGGPVELRAAERGDKRRILELAER 383 Query: 361 NAATALTSKLSQQSTVHQ----RLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVF 415 NA AL + + Q L L + L L + R+ECFDISH G TVAS VVF Sbjct: 384 NARLALDQERLRSERRRQQRVDALEGLQAALGLDAIPLRLECFDISHVGGTHTVASMVVF 443 Query: 416 DANGPLRAEYRRYNITGITPG--DDYAAMNQVLRRRYGKAIDDSK--------------I 459 +A P +A+YRR+ + G DD+A+M +VL RR + + Sbjct: 444 EAGAPKKADYRRFTLREGVEGVPDDFASMEEVLSRRLAQYERQHDRSPFDDGYDASFASL 503 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 P+V++IDGGKGQL+ V + + ++ +AK +E +F Sbjct: 504 PNVVVIDGGKGQLSAGMRVLD----GFRRRGVTIVSLAK------RIEEVFVPGREAPIV 553 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 LP D+P L ++Q IRDE+H AIG HR +R + TS L+++ GVGP R++ LLK+ G Sbjct: 554 LPHDTPELQLLQRIRDEAHRFAIGHHRIRRDRAMTTSVLDSLPGVGPARKRALLKHFGSP 613 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIF 605 + A+ EE+ VPG+ +A ++ Sbjct: 614 EAFLAATREELEAVPGLPGKVARDLY 639 >UniRef50_Q5LIY7 UvrABC system protein C n=26 Tax=Bacteroidetes RepID=UVRC_BACFN Length = 608 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 185/625 (29%), Positives = 324/625 (51%), Gaps = 39/625 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 + K + + +PG+Y+ +A GT+IYVGKAK+LK+R+ SYF KT LV Sbjct: 7 LKTSEYLKGIVSNLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLV 66 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 ++I I V ++E +ALLLE+N IK Y+PRYNVLL+DDK+YP I + + PR+ R Sbjct: 67 SKIADIRYIVVNSEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQNEYFPRVFKTRR 126 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-----CLQYQIGRCL 175 Y+GP+ + ++ L L++ ++P+R C ++ R CL+Y I C Sbjct: 127 IIRNGSSYYGPYSHSPSMHAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCA 186 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC+ GL S+EEY + + ++ L G ++ L RM+ + ++FEEA +++++ Sbjct: 187 GPCI-GLQSQEEYLKNIAEIKEILKGNTQEISRLLYQRMQDLAAEMKFEEAQKVKEKYAL 245 Query: 236 VRRVTEKQFVSNTG-DDLDVIGVAFDAGM-ACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 + K V ++ ++DV + D A ++ L I G + + ++ K Sbjct: 246 IENYRSKSEVVSSVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKE 305 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 E++ + + + ++ EI++ F++ E+ + RGD+ + Sbjct: 306 ELLTLGIIEM---RERYKSASREIIVPFDI-----------EIELNDVTFTIPQRGDKKK 351 Query: 354 YLKLARTNAATALTSKLSQ------QSTVHQRLTALASVLKLPEVK-RMECFDISHTMGE 406 L+L+ N ++ Q + + + + L L + ++ECFD S+ G Sbjct: 352 LLELSLLNVKQYKADRMKQAEKLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGT 411 Query: 407 QTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILI 465 VA+CVVF P +++YR+YNI + DDYA+M +V+RRRY +AI ++S +PD+I+ Sbjct: 412 DAVAACVVFKKAKPSKSDYRKYNIKTVVGADDYASMKEVVRRRYQRAIEEESPLPDLIIT 471 Query: 466 DGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSP 525 DGGKGQ+ + V EL + + G+AK + + F + + SP Sbjct: 472 DGGKGQMEVVRQVMEELQL-----DIPIAGLAKDRKHRTS--EVLFGFPPQTIGIKQHSP 524 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 +++ I+DE H AI HR KR+K + S+L+ I+G+G K + LLK ++ ++ A Sbjct: 525 LFRLLEQIQDEVHRFAITFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEA 584 Query: 586 SVEEIAKVPGISQGLAEKIFWSLKH 610 ++EE++ + I + A+ I L + Sbjct: 585 TIEEVSAI--IGESKAKIIKEGLDN 607 >UniRef50_Q04EZ7 UvrABC system protein C n=42 Tax=Lactobacillales RepID=UVRC_OENOB Length = 607 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 202/605 (33%), Positives = 316/605 (52%), Gaps = 32/605 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + SQPG Y+M D G +IYVGKAK+LK R+ SYF + KT LVA I Sbjct: 6 IEQKLALLPSQPGSYQMKDKNGKIIYVGKAKNLKNRVRSYF-KAEHTGKTAELVANIHDF 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT+++ EA LLE+ IK Y+P +N+ L+ SYP+I ++ + PRL + KH G Sbjct: 65 EFIVTNSDKEAFLLENTLIKRYRPYFNIRLKFSGSYPYIEITNERDPRLILANTLKHDHG 124 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+PN YA ETL L+ +P+R+C + RPCL Y +G+CLG C V +E Sbjct: 125 TYFGPYPNVYAASETLHFLEMTYPLRRCNGY----QGRPCLYYSMGQCLGACWR-TVPQE 179 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV- 245 EY + ++ + FL+G+ + ++ + +M+ AS + E+E AA RD+++ + + E Q V Sbjct: 180 EYQKNIDAITRFLNGETGKAISDIKKKMKRASDSTEYELAADFRDRLKFIDQTVESQRVL 239 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D+ D G + + F+RQG++L + + E +E+++ QFY Sbjct: 240 QNDHTPRDLFNFYMDKGWMTIEIFFLRQGRLLRQQKETL--ALADSVKEELESYIQQFYS 297 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 Q + + P E+L+ N+ K L +I V+T RG++ LKLA NA Sbjct: 298 QKNAQK--PKEVLVPKNVDTKLLAETL-------EIPVRTPVRGEKRDLLKLAAKNARIT 348 Query: 366 LTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L K + + + LK+P R E FD S+T G V++ VVF+ P Sbjct: 349 LEDKFRLMELNEEKTTGAMKEITDALKIPHGYRFEAFDHSNTQGSNYVSALVVFEDGLPN 408 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFA 480 + YRRY + T D+ A +V+ RRY + D+ ++ PD+IL+DGG+ QL A+ Sbjct: 409 KNLYRRYKLRTPTGQDEAKATFEVITRRYTRLRDEGQMYPDLILMDGGEIQLHSAEAALR 468 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 +LD+ + + K + GE L P S +++Q I+DE H Sbjct: 469 KLDI-----DIPVAAMVKNDKHQTA---DLLNSRGENLFLDPHSQGFYLLQRIQDEVHRF 520 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 I HR+ R K +S L+ I G+GPK R L++ G L + +AS+E+I + GI + + Sbjct: 521 VITFHRQLRTKTNLSSRLDEIAGIGPKSRVKLMRRFGSLPKIADASIEDIEAL-GIGEKV 579 Query: 601 AEKIF 605 A + Sbjct: 580 ATLVK 584 >UniRef50_B3WE47 UvrABC system protein C n=33 Tax=Bacilli RepID=UVRC_LACCB Length = 602 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 204/615 (33%), Positives = 319/615 (51%), Gaps = 35/615 (5%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 + L + PG Y+M D G +IYVGKAK+LK R+ SYF + K A+V+Q+ Sbjct: 3 SAHIEHKLSLLPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQV 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 D VT T+ EA LLE I+ YQP YN+ L+ YP+I ++ + P++ + + Sbjct: 62 ADFDFIVTSTDKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKITHERDPKIEITGTIRK 121 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 G YFGP+PN YA +ET+ +QK++P+R+C + RPCL Y +G+CLG C V Sbjct: 122 DGGYYFGPYPNVYAAQETMHFIQKVYPLRRCNGY----QGRPCLYYHMGQCLGACFR-TV 176 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 E+EY Q+E ++ FL+G + L ++ME A++NL+FE AA IRDQ+ + + EKQ Sbjct: 177 PEKEYTDQIERIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQ 236 Query: 244 FVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 + + D+ D G + V FIRQ +++ S V E E+F+ Q Sbjct: 237 KIISHDNTTRDLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVN--TAKEEFESFILQ 294 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 FY + + ++ P E+L+ L +K L +I V+T RG++ + LA N+ Sbjct: 295 FYSRKNNVK--PREVLVPAALDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNS 345 Query: 363 ATALTSKLSQQS----TVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 L K T + L + L LP E FD SH G V++ V F Sbjct: 346 QIKLEDKFRLMELDNRTTIGAMKELMAALNLPMGHVAEAFDHSHIQGADPVSAMVQFVDG 405 Query: 419 GPLRAEYRRYNI---TGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQ 474 P + YR+Y + D+ A +V+RRRY + + + + +PD+IL+DGG+ ++ Sbjct: 406 QPAKNNYRKYKLDADKTHNGADEAANTREVIRRRYTRLLKERAPLPDLILMDGGEIEMNA 465 Query: 475 AKNVFA-ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 AK+V EL++ + G+ K K L F + +L P S ++++ I Sbjct: 466 AKDVLENELNL-----DIPVAGMVKNNKHKTAA--LLFGNADQLINLDPKSQGFYLLERI 518 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 +DE H AI HR+ AK S LE I+GVGPK R LL+ + ++ A +E+I ++ Sbjct: 519 QDEVHRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL 578 Query: 594 PGISQGLAEKIFWSL 608 GIS+ +A+ + SL Sbjct: 579 -GISKKVAQALKLSL 592 >UniRef50_A8SNK4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNK4_9FIRM Length = 620 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 178/626 (28%), Positives = 312/626 (49%), Gaps = 31/626 (4%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 +FD LK + PGVY MYD +IYVGK+ LK R+ SYF +N +K +A+V Sbjct: 6 KEFDINYELKKLPDLPGVYIMYDKDDKIIYVGKSVSLKNRVRSYFTTNHKYKKVQAMVEH 65 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 I + + + + ETE+L+LE N IK +P+YN+ L+DDK YP+I ++ + P++ R K Sbjct: 66 IHRFEYIIVNNETESLVLEANLIKKNRPKYNINLKDDKQYPYIKITNEKFPKILKVRDIK 125 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVE 180 K +YFGPFP + + + L I+ IR C+ + + + RPC+ Y +GRC PC + Sbjct: 126 EDKAQYFGPFPTISDLEKLMELSILIYNIRDCKLNFDKGKFLQRPCMSYYLGRCSAPCTQ 185 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + E Y V+ V FLSG ++ L++RM+ +S E+E A + RD + + + Sbjct: 186 N-IDRENYNNDVKRVIKFLSGDTTEIKEILLNRMKQSSAKEEYELAMKYRDFLSEIDYLF 244 Query: 241 EKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 KQ + +I A+ + V + + G V+ + + + E+ E+ Sbjct: 245 TKQIFNIKKFKEYHLISYAYAENILVVAIFIVNDGLVVDRKHFIVENILDLEVEELFSNV 304 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSD--KTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 + QFY+ E+ +D++ + + + + I+V+ +G + +K+ Sbjct: 305 IRQFYISHHNKV---KEVYIDYSDEKFLNEISLFLANIFSEKSISVKNPKKGVKFDQMKI 361 Query: 358 ARTNAATALTSKLSQQSTVH----QRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 + NA LT + ++ Q + L ++L + + R+EC+DIS+ G+ V S V Sbjct: 362 LQKNANEILTKHIFDNKNINVKYLQAINYLKNILDIDNLDRIECYDISNISGDFNVGSMV 421 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD---------SKIPDVIL 464 V+ +YR++ I + DDY++ ++L RR+ + +D+ S+ PD+IL Sbjct: 422 VYKNGFKSSKDYRKFKIKTVVGQDDYSSHREMLTRRFNRFLDEKINSAGSSFSEKPDLIL 481 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGGKG + AK V E ++ ++G+ K + + F E L ++ Sbjct: 482 MDGGKGHVNVAKEVLLEKNL-----DVPVIGLVKNDKHRTKG--IIF--EDNYIELDINT 532 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 + I++E H AI HR + K S L+ I+GVG ++ LL + G + ++ Sbjct: 533 NIYRFLFDIQEEVHRFAINYHRSLQNKKLQNSVLDEIKGVGEIKKIKLLSHFGSISSIKK 592 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLKH 610 ASVEE+ V + + A+ IF + Sbjct: 593 ASVEELLMVDKMDKKTAKNIFEFFNN 618 >UniRef50_Q7V7L7 UvrABC system protein C n=43 Tax=Cyanobacteria RepID=UVRC_PROMM Length = 667 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 198/643 (30%), Positives = 334/643 (51%), Gaps = 48/643 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEAL 59 + D+ + LK + ++PG Y M D ++YVGK+K L+ R+ SYFRS+ + + Sbjct: 28 LKDENRLEQRLKEIPAEPGCYLMRDVEDRLLYVGKSKCLRNRVRSYFRSSSDHGPRIRLM 87 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V QI +I+ VT +E E+L+LE N IK QP +NVLL+DDK YP++ ++ + +PR+ + Sbjct: 88 VRQIAEIEFIVTDSEAESLVLESNLIKNQQPHFNVLLKDDKKYPYLCITWSEEYPRIFIT 147 Query: 119 RGAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 R + + ++GP+ + +R TL L+++ FP+RQ + ++ R CL Y IGRC G Sbjct: 148 RRRRFRNKNDRFYGPYVDVGLLRRTLLLVKRSFPLRQRPRPL--HQDRTCLNYSIGRCPG 205 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 C + ++ ++Y Q + V + G++ ++ L +ME S +++E AA IRDQI+ + Sbjct: 206 VC-QQKITPQDYHQVLRKVAMVFQGRNQELKVLLEKQMERYSDRMDYESAANIRDQIKGL 264 Query: 237 RRVTEKQFVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 ++TE Q +S ++ DV+ +A D +A V + +R GK++ + L Sbjct: 265 EQLTEGQKMSLPDSSVSRDVLAIASDHRVAAVQLFQMRAGKLVNRLGFTADAV-DQTLGS 323 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 V++ + + Y Q +P E+L+ ++L + LL D LSE GR++ + R +A Sbjct: 324 VLQRVIEEHYSQV-DAVEVPPEVLVQYSLPQQELLVDWLSEHRGRRVQISCPQRQAKAEL 382 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCV 413 ++L NA L+ S Q LA +L+L R +E +DISH G VAS V Sbjct: 383 IELVERNAVFELSRAKSGQQQQELATEDLAQLLELTTQPRRIEGYDISHIQGSDAVASQV 442 Query: 414 VFDANGPLRAEYRRYNITGIT----PGDDYAAMNQV--------------------LRRR 449 VF P + YR+Y I + DD+ AM ++ L+R Sbjct: 443 VFIDGLPAKQHYRKYKIKSSSIKSGHSDDFMAMAEIMRRRFRRWARVKQEGSNFENLQRC 502 Query: 450 YGKAIDDS---KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGL 506 G A+ PDV++IDGGKGQL+ A ELD+ ++ +AK Sbjct: 503 SGSALQTDGLNDWPDVVMIDGGKGQLSSAMEALRELDL---HEDLVVCSLAKK------H 553 Query: 507 ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP 566 E +F + + PD + +++ +RDE+H A+ HR++R N S L I G+GP Sbjct: 554 EQIFVPGQSKPLDSDPDQLGVVLLRRLRDEAHRFAVSYHRQQRGVRMNRSRLTDIPGLGP 613 Query: 567 KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 +R + LL + + ++ ASV++I++ PG+ LA +++ Sbjct: 614 RRVRDLLAHFQSIDAIQLASVQQISQAPGLGPALALQVWTYFH 656 >UniRef50_C0QWI5 Excinuclease ABC, C subunit n=2 Tax=Brachyspira RepID=C0QWI5_BRAHW Length = 613 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 193/621 (31%), Positives = 315/621 (50%), Gaps = 35/621 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 LK + + GVY M D+ +IY+GKAK LKKR+SSYF ++ KT ALV I+ I Sbjct: 9 IHDKLKRIPDKSGVYFMKDSKSEIIYIGKAKSLKKRVSSYFNNSNKDAKTTALVEHIRDI 68 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + +T E EAL+LE I+ ++P YN+LL+D KS+PFI ++ + PR+ R Sbjct: 69 EYILTENEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAITNEHFPRVIKARNVIDKDN 128 Query: 127 -----EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCVE 180 +Y+GP+ + + F +R+C+ R+ RPCL + IG+C PC + Sbjct: 129 ARKYKKYYGPYVAAERADNIVKFIIDNFKLRRCKYDFPLKRAIRPCLYHHIGKCTAPCAD 188 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 L+ EE+Y + ++ + L G D+++ +L M ++ LEFE A +RD+I ++ +T Sbjct: 189 -LIKEEDYDKTIDDAIMVLEGNVDELVARLKQEMFVHAEKLEFEAAKDLRDKIDLLKYIT 247 Query: 241 -EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE-------- 291 E+ DD+D+IG + G + +L ++ GK+ +++ + P + Sbjct: 248 VEQSIYIPESDDIDIIGAYGENGNYTIVILSVKGGKLADRKTFSMQSPNDEDYYNENGMS 307 Query: 292 -LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD 350 SE++ F Q+Y + +P I DF L+D ++ D L +++GR ++++ Sbjct: 308 KYSEILSAFFTQYY---THANLIPASISTDFPLNDVDIIKDYLKQVSGRDVDIKLDKS-- 362 Query: 351 RARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTV 409 R + +A NA K + V +T L + KL + +E FDI+H G T+ Sbjct: 363 RKGLMAIANENAKHLFKEKALIRE-VPLGITRLQEIFKLKKAPSIIESFDIAHIQGSYTM 421 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGG 468 A V F YR +N+ +T DD+A++ + + RRY + D++ PD+ILIDGG Sbjct: 422 AGMVRFVNGVSDNKNYRIFNMKTVTGIDDFASIKEAVYRRYKRLRDENLTFPDLILIDGG 481 Query: 469 KGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH 528 KGQL A ELD+ ++ +AK E ++ E L + PA Sbjct: 482 KGQLNSAIEALKELDIKGQ----PIMALAKK------FEEIYLPNRNEPVQLSDNEPARL 531 Query: 529 VIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE 588 +Q +RDE+H H KKR++ S LE+IEG+G K + L + + ++NAS E Sbjct: 532 FLQKVRDETHRWVNSSHGKKRSREMVRSELESIEGIGKKTIEKLYSHFINIDNIKNASFE 591 Query: 589 EIAKVPGISQGLAEKIFWSLK 609 I +PGIS A I+ Sbjct: 592 SIRNIPGISYKAANNIYDHFH 612 >UniRef50_C6X0K5 Excinuclease ABC subunit C n=9 Tax=Bacteroidetes RepID=C6X0K5_FLAB3 Length = 611 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 184/607 (30%), Positives = 314/607 (51%), Gaps = 38/607 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + + LKT+ S+PGVYR YD ++YVGKAK LKKR+ SYF NL +T +VA+I + Sbjct: 17 NLELQLKTLPSEPGVYRYYDKNDQLLYVGKAKHLKKRVLSYFNKNLPGYRTRIMVAKIHR 76 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ T+ +E +ALLLE+N IK +QP YNV+L+DDKSYP+I + + PR+ + R Sbjct: 77 LETTIVPSEYDALLLENNLIKEHQPFYNVMLKDDKSYPWICIKNEDFPRIFLTRTMIKDG 136 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR-----NRSRPCLQYQIGRCLGPCVE 180 EY+GP+ + L ++ I+ +R C ++ + + CL++ I C GPC E Sbjct: 137 SEYYGPYARVRPAKVLLDTIKHIYKLRTCTLNLSPPKIAEGKYKVCLEFHIKNCQGPC-E 195 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 L S+E+Y +++ +R + G + L+++M ++NL+FE+A +++++ + Sbjct: 196 MLESKEDYDLKIDAIRGIIKGDFKRAKEYLVNQMMKYAENLQFEDAHVVKERLDMLENYQ 255 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 K V N DD+DV G+ D A V+ I+ G ++ S + K +++E Sbjct: 256 HKHTVVNPNIDDVDVFGMTSDETAAYVNYFKIQNGNIIQSFTTEIKKILDESDEDILEEA 315 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + EI FN K +L L + + GD+ R ++L+ Sbjct: 316 MI--------------EIRQKFNSDSKEILLPFHLTLEIPNVKLIVPKVGDKKRIVELSE 361 Query: 360 TNAATALTSKLSQ------QSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASC 412 NA KL + ++ + + +L++P R +E FD S+ G V++C Sbjct: 362 KNAKEYRIEKLKAVQIVDPERHTNRIMAEMQKLLRMPVEPRHIEGFDNSNIQGTNPVSAC 421 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQ 471 VVF P +A+YR ++ + +D+A M +V+ RRY + ++++ +P +ILIDGGKGQ Sbjct: 422 VVFKNGKPSKADYRIFHPKTVEGANDFATMEEVIHRRYRRLLEENSPLPQLILIDGGKGQ 481 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L+ A L + ++G+AK LE ++F + L S L ++Q Sbjct: 482 LSSAVKSLKLLGLYGK---ITIIGIAK------RLEEIYFPEDPIPLYLDKKSETLKILQ 532 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDESH + HR +R S LE I G+G K +LL + ++ ++ +S E + Sbjct: 533 RVRDESHRFGVKHHRTRRKNSTIKSELEEIPGIGEKAVDLLLSKLKSVKRVKESSRETLE 592 Query: 592 KVPGISQ 598 ++ G S+ Sbjct: 593 EILGKSR 599 >UniRef50_Q0F271 Excinuclease ABC subunit C n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F271_9PROT Length = 611 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 230/618 (37%), Positives = 351/618 (56%), Gaps = 25/618 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + L + +PGVYRM D VIYVGKA++L+KR+SSYF+ S +T A+V Q++ Sbjct: 4 EPPIALTALPREPGVYRMLDHARKVIYVGKARNLRKRVSSYFQRQPESPRTIAMVRQVRD 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I +VT +E EAL+LEHN IK +PRYNVL++D K+YP+I LS + P+L M+RG + Sbjct: 64 IAFSVTPSEAEALVLEHNLIKQLKPRYNVLMKDSKTYPYILLSDEPFPKLTMYRGNRTLP 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GEYFGPFPN AV +TL ++Q +F +R CE++V+ NRSRPC+Q+QIGRC PC + +VS+ Sbjct: 124 GEYFGPFPNAGAVHQTLHIMQSMFLLRDCEDAVFNNRSRPCMQHQIGRCSAPCCD-IVSK 182 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 +Y +QV+ VR FL G+D+ +L +M+ A+ ++FE+AA +RD+I+A+R V Sbjct: 183 AQYRRQVDEVRQFLRGRDNDLLKGWEQQMQQAADAMQFEQAAILRDRIRALRSVLAGSEG 242 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + DD D I + + R G+ LG+ + E++++ + + Y Sbjct: 243 GDLPDDADGIVLIRHTTAVLACIGVRRSGRDLGTHNIRIDQATDAGELEILQSLLIERY- 301 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLS-ELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + P +IL++ + L ++ G+K V + RG R ++L+ + A Sbjct: 302 ---EKELPPADILVNTCKENIQELNRLIALIKPGKKTAVHSPVRGSRLQWLQQIGHSGAQ 358 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 + S+ +Q + ALA +L + V R+ D +H G Q VA+ G + Sbjct: 359 IIASR--KQESQQPAFAALAEMLAMEVVPERIAAVDNAHLGGTQMVAAITYAGWQGAEKD 416 Query: 424 EYRRYNITGITP----GDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 YRRY + GI GDDY AM VL R + +D+ PD++LIDGG+GQL A Sbjct: 417 YYRRYKLDGIAGQVIEGDDYGAMQAVLERFFRAIREDTIPCPDLMLIDGGRGQLGVALQC 476 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPE-------GEGFSLPPDSPALHVIQ 531 + + + L GVAKG R+ G ET++ G+ S AL +I Sbjct: 477 ATDAGL----HELKLAGVAKGDARRVGEETIWPGWTDSGAIGIGKPLKPGRHSAALLLIA 532 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 +RDE+H A RK++ + TS L+T+EG+GP +R LLK+ GG++G++ A +++A Sbjct: 533 RVRDEAHRFAGAYMRKRKKQSMFTSVLDTVEGIGPAKRISLLKHFGGIEGVKKAGRKQLA 592 Query: 592 KVPGISQGLAEKIFWSLK 609 + PGIS LAEKIF SL Sbjct: 593 QAPGISDKLAEKIFLSLH 610 >UniRef50_Q5GSR4 UvrABC system protein C n=10 Tax=Wolbachia RepID=UVRC_WOLTR Length = 606 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 202/606 (33%), Positives = 322/606 (53%), Gaps = 13/606 (2%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K ++ GVY+M V+YVGKAK+LK RLS+Y R S +T+ +++Q+ ++ Sbjct: 10 IKKQIELSPQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKV 69 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 +V VT E +ALLLE IK +P YN++ +D +SYP+I +S +PR+A +RG Sbjct: 70 EVLVTENEIDALLLEARLIKSLKPPYNIIFKDGRSYPYIVISKHNYPRIAQYRGKFKKGE 129 Query: 127 -EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 Y+GPF + AV++T+ LQK F +R C + + + RPC++YQI RC PCV G +++ Sbjct: 130 FHYYGPFISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCV-GKITK 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 ++Y Q V+ R L G++++V QL S ME S+ +E AA RD+++ + ++ + Sbjct: 189 DDYCQSVKQTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMD 248 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 + D D G+A +AC+ VL R GS YF + E++ TF+ + Y Sbjct: 249 FSFEKDADFFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLY- 307 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + P +I + ++ K ++ +L + + I LK N+ + Sbjct: 308 --NSANIPPAQIYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRS 365 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAE 424 L KL+ ++ L+ + LP + R+E +D SHT G Q V VV G L++E Sbjct: 366 LEQKLTDYKNNLEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLKSE 425 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YR++ I G GDDY M +VL RR+ D +PD +LIDGG G ++ +NV L++ Sbjct: 426 YRKFTIKGEILGDDYEMMREVLTRRFSNNTKDV-VPDFLLIDGGPGHISVVQNVLNTLNI 484 Query: 485 SWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGG 544 + +AKG+ R AG E + + F+L DS + +Q +R+E+H AI Sbjct: 485 N-----VPFACMAKGSYRNAGNERFYMPNRED-FTLKNDSKVMLYLQSLRNEAHRFAITS 538 Query: 545 HRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKI 604 HRKKR K S L I +G KR+ L+ + G ++ + AS+ EI V IS+ LAE I Sbjct: 539 HRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVI 598 Query: 605 FWSLKH 610 + + Sbjct: 599 LKHVDN 604 >UniRef50_B1CBT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBT5_9FIRM Length = 622 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 198/626 (31%), Positives = 333/626 (53%), Gaps = 33/626 (5%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQ 64 + +K + GVY M D GT+IYVGKAK LK R++ YFR N + K +V I Sbjct: 8 NLNNKIKLLPENSGVYLMKDENGTIIYVGKAKVLKNRVTQYFRKNSNHTPKVLKMVENIA 67 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKH 123 + +T+ E EAL+LE N IK Y+P YN+L+RDDK+YP+I ++ D +P+L + R + Sbjct: 68 DFEYIITNNEMEALILECNLIKKYRPYYNILMRDDKTYPYIKITIKDEYPKLFVTRKYIN 127 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR--NRSRPCLQYQIGRCLGPCVEG 181 +YFGP+ N ++ ++ + +++PI C+ + + CL Y IG+CLG C +G Sbjct: 128 DGNKYFGPYANATYAKKAVSTINELYPIAMCKKELKSGVKKGNVCLNYHIGQCLGVC-QG 186 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 + + Y + ++ + L+GK +++ L ++M S+NL+FE A ++RD+I A+R + Sbjct: 187 NIDTKLYNRYIKEIIDILNGKTSKIIQSLENKMNGYSENLDFENAGKVRDKIFAIRGLKS 246 Query: 242 KQFVSNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +Q VSN D +D++G+A MACV V +R K++G +Y K ++SEV+ F+ Sbjct: 247 EQNVSNANADNMDILGLAMAEDMACVQVYALRDKKIVGRENYILKGQNEKDVSEVLAAFI 306 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 QFY + +P IL++ D + D L+ L +K+ ++ +G++ + LKLA Sbjct: 307 KQFY---TNTPFIPPLILVEKEFEDIDNIKDLLTNLKSKKVEIKVPVKGEKKKLLKLATD 363 Query: 361 NAATALTSKLSQQSTV----HQRLTALASVLKLPE--VKRMECFDISHTMGEQTVASCVV 414 NA L + + ++ + + + + + R E +DIS+T G +V VV Sbjct: 364 NAKLNLENIIGKEKQKALMEKKAVEEINKYANISKEGNFRYEAYDISNTSGVDSVGVMVV 423 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS----------KIPDVIL 464 FD YR++ + I +DY +M +V+ RR +A + +PDVI Sbjct: 424 FDGAKRNYKAYRKFKVKSIEGPNDYGSMVEVVFRRLNRAQKELKQNDDNPRFLPLPDVIF 483 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDS 524 +DGG G + KNV D + +LG+ K K + E ++ Sbjct: 484 VDGGIGHVNAVKNVVDTFDFN-----IKVLGLGKNNKHKLKE---VVKNNEEARNIRDFE 535 Query: 525 PALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRN 584 A ++ I +E H AI H+ R+K ++LE IEG+G + + LLK+ ++ L+N Sbjct: 536 FAGKLLNDISEEVHRFAIDYHKNLRSKSFLKTTLEEIEGIGKVKCRNLLKHFKNMEELKN 595 Query: 585 ASVEEIAKVPGISQGLAEKIFWSLKH 610 AS+EEI KV G+++ LA+K+ K+ Sbjct: 596 ASIEEIVKVDGMNEELAKKVKDHFKN 621 >UniRef50_C3JAE7 Excinuclease ABC subunit C n=2 Tax=Bacteria RepID=C3JAE7_9PORP Length = 604 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 183/618 (29%), Positives = 321/618 (51%), Gaps = 38/618 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + K L T+ PG Y+ Y+A G +IYVGKAK+L++R+SSYF+ RKT LVAQI Sbjct: 5 EIKKILPTLPLSPGCYQYYNAEGEIIYVGKAKNLRRRVSSYFQKEHTDRKTRQLVAQIVD 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 + V E++ALLLE+N IK YQP+YN+LL+DDKSYP I ++ + PR+ + R + Sbjct: 65 VKYIVVANESDALLLENNLIKTYQPKYNILLKDDKSYPSIVVTREPFPRIFVTRTIDPSW 124 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENS-----VYRNRSRPCLQYQIGRCLGPCVE 180 G+Y+GP+ + + ++++++ +R C + + R + CLQY I RC PC E Sbjct: 125 GDYYGPYTSVAMAHGMVGIIREMYKVRTCRHRFTQEAIERGKYARCLQYHIKRCEAPC-E 183 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 GLVS E+Y + L G QV+ Q SRM S+ L +EEA + + ++ ++ + Sbjct: 184 GLVSREDYLNNIAAAVELLKGNLRQVIQQTTSRMLALSEELRYEEAGQEKARLAMLQAYS 243 Query: 241 EKQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 K V+ T D+DV + MA V+++ + +G ++ + + K E ++ T Sbjct: 244 TKHIVAPETRHDIDVFSYEEEGPMAYVNMMQVHEGAIVRALTVEYKKAIDEEAEDIFATA 303 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + + + + E++L + L ++L ++ +G++ + L+L+ Sbjct: 304 ITEL---RGRYESRAKEVILPYPLGWESL----------GHFSITIPKQGEKKKLLELSI 350 Query: 360 TNAATALTSKLSQ------QSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASC 412 N +L + + V + + + L LP R +ECFD S+ G VA+C Sbjct: 351 DNVKRYKLDQLKRAEKLNPEQRVQRLMNKMIEDLHLPVAPRYIECFDNSNLQGTAPVAAC 410 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQ 471 VVF P + EYR++++ + DD A+M +++ RRY + ++ +P +I+IDG +GQ Sbjct: 411 VVFRNGKPSKKEYRKFHVKTVEGADDLASMREIVERRYRRLQEEELPLPQLIVIDGARGQ 470 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 L A + + + ++G+A +E ++F E L DS L + Sbjct: 471 LEVAVETLSAMGIGAPTT--TIIGLA------ERMEEVYFPGEENPLFLSRDSETLRTLM 522 Query: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 IRDE+H I HR R+K + S+L+ I+GVG + ++ LL++ ++ + A + E+ Sbjct: 523 QIRDEAHRFGITFHRSIRSKNQIHSALDDIDGVGKQTKEALLRHFRSVKRIEAAELPELE 582 Query: 592 KVPGISQGLAEKIFWSLK 609 + I + ++ +L Sbjct: 583 SL--IGKKRGGIVYKALH 598 >UniRef50_A9NEZ8 Excinuclease ABC, subunit C n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEZ8_ACHLI Length = 577 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 199/609 (32%), Positives = 314/609 (51%), Gaps = 40/609 (6%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K L + ++PG Y M D G VIYVGKAK+LK R+SSYFR + KTE L+++I Sbjct: 1 MKEKLSILPTEPGCYMMLDQSGEVIYVGKAKNLKNRVSSYFRGA-HNAKTEKLISEISDF 59 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT++E E+L+LE+N IK Y P YN+ L DDKSYP++ ++ + P L + R + K Sbjct: 60 NYIVTNSEQESLILEYNLIKKYAPLYNIRLIDDKSYPYLEITNEKDPMLVVSRYIEVDKT 119 Query: 127 E-YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 + FGP+PN + RETL LLQ+++P+R+C S+PCL Y +G CLGPC V Sbjct: 120 KTLFGPYPNSKSARETLKLLQRLYPLRRCN----PVDSKPCLYYHMGLCLGPCAHEKV-- 173 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 +Y +E + FL G +VL +L RM+ AS++LEFE A RD I AV+ TEKQ + Sbjct: 174 -DYKPNIERITRFLKGDTKEVLNELEERMKQASEDLEFERAVEYRDMILAVKDTTEKQIM 232 Query: 246 -SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 N D D I A++ + +L +RQG++L + T+ E T++ +Y Sbjct: 233 TLNDYKDRDFISFAYNEDDMAIQILMMRQGRILDTHKNVIS--YMTDPYETFLTYIKNYY 290 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 LP E++ D + K L K V GD+ + + LA NA Sbjct: 291 ----DKFLLPDELVFDQQIPFKELQMYF-------KNKVVVPKIGDKKKLVDLAHKNALE 339 Query: 365 ALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGP 420 LT ++ + +++ AL + ++ +E FD +H G ++ +V+ Sbjct: 340 DLTHYYKLYRAKEEKLGEQIEALEQIFD-KKISYIEVFDNAHLFGTAPISGMIVWKDYHF 398 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVF 479 R YR++++ T DDY AM +VL RRY + + + K+PD+I +DGGKGQ++ A V Sbjct: 399 ERKMYRKFHLKTTT-NDDYQAMKEVLYRRYQRLLVEKQKLPDLICVDGGKGQVSAAYEVI 457 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 ++ +LG+ K + + E L SP + + +E H Sbjct: 458 QLFNL-----DIPILGLKKDKYHMLEGYVI----QNEVTILDKKSPLYQFLGQLSEEVHR 508 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 I H+K + + TS L+ I G+GP R++ LL + ++NAS E++ + G+ Sbjct: 509 FTITFHQKTKNRKDYTSVLDNIPGLGPTRKKKLLASFKSIDDIKNASTEDLRSI-GLPDK 567 Query: 600 LAEKIFWSL 608 + + I + Sbjct: 568 VIKSIKEGI 576 >UniRef50_C2CW30 Excinuclease ABC subunit C n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CW30_GARVA Length = 749 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 198/704 (28%), Positives = 323/704 (45%), Gaps = 106/704 (15%) Query: 1 MSDQFDA-KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEA 58 + D D + + +QPGVY+ D G VIYVGKAK L+ RLS+YF+ N +T++ Sbjct: 56 LGDTRDLFRPKTSDIPNQPGVYKWRDEKGKVIYVGKAKSLRNRLSNYFQPLNQLHPRTQS 115 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V + ++ TV +TE EAL LE+ +IK + PR+NV+ +DDK+YP++ +S D PR+ + Sbjct: 116 MVLTARSLEWTVVNTELEALTLEYTWIKEFNPRFNVVFKDDKTYPYLAVSVNDDFPRVWI 175 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRC 174 R YFGP+ + +R +L L K FP+R C SV+ RPCL IG+C Sbjct: 176 TRNRNSKSTRYFGPYAKVWQLRHSLDSLLKTFPVRTCRQSVFVKAHKTGRPCLLAAIGKC 235 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGK-DDQVLTQLISRMETASQNLEFEEAARIRDQI 233 PC+ V + + VE + L+G D + L M+ +S NL+FE AA+IRD+I Sbjct: 236 SAPCI-AKVDRKTHRHNVEQLVGVLTGSIGDSYINDLTREMKESSDNLDFENAAKIRDKI 294 Query: 234 QAVRRVTEK-QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 + V ++ V + + DV G + D+ ACVH F+R+G + G +++ + Sbjct: 295 NIFKIVMQQNSVVFDENVEADVFGFSGDSLEACVHAFFVREGLLRGEKNWQVERSEDISN 354 Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFN------------------------------ 322 ++++ + + Y + L E L Sbjct: 355 ADIIANLLMRVYSEYESNNNLQYEDSLKIEQSRNALQIDLENTKSKYIDSAYRAKTTKER 414 Query: 323 -------------------LSDKTLLADSLSELAGRKINVQTKPRGDR-----------A 352 + + + N +K RG + Sbjct: 415 KKRQESTGRGDLLDPITPIPREIIIPFEISQNQCENLENWLSKLRGSKVSIKVPERGDKR 474 Query: 353 RYLKLARTNAATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGE 406 + A NA +L ++S + +A L + E R+EC+DIS+T GE Sbjct: 475 NLMNQANDNAKQSLMRLKSSRISSLDARSSAMNEVAEALGMSESPLRIECYDISNTVNGE 534 Query: 407 QTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGK----------- 452 VAS VVF+ +EYRR++I G DD +A+ + + RR+ Sbjct: 535 YQVASMVVFEDGIAKPSEYRRFSIKGSDGNGKLDDLSALYETISRRFKHTSSGDVDDDYG 594 Query: 453 -------AIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 + P++I++DGG+ Q A+ + + + ++ G+AK Sbjct: 595 ENLEKSKYKKFAYTPNLIVVDGGREQARAAQKAMIDCGIK----NIVVCGLAKK------ 644 Query: 506 LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVG 565 LE ++ L S L+++Q RDESH AI HR+KR + SSL++I G+G Sbjct: 645 LEEVWLPNNEYPIILKRSSQGLYLLQRARDESHRFAITYHRQKRRRAMLNSSLDSIPGIG 704 Query: 566 PKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++ LL G ++ L++ASV+++ KV GI Q A+ I+ SL Sbjct: 705 EFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLH 748 >UniRef50_C2MAD2 Excinuclease ABC subunit C n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MAD2_9PORP Length = 602 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 197/617 (31%), Positives = 320/617 (51%), Gaps = 40/617 (6%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + KA L T+ +PG Y+ + GT+IYVGKAK+L+ R+SSYF ++ + KT LV++I+Q Sbjct: 5 EIKAILPTIPQEPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKNPKTTRLVSEIRQ 64 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ V +TE EAL+LE+N IK + P+YN+LL+DDKSYP I ++ + PR+ R + K Sbjct: 65 LEYFVVNTEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVITDEPFPRIFATR-KEVGK 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-----CLQYQIGRCLGPCVE 180 G+YFGP+PN + L+ ++ +R C ++ R CLQY I +C GPC + Sbjct: 124 GDYFGPYPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPC-Q 182 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 G VS EEY V+ R L G+ ++ + + M S+ LEFE A + R I+ +RR + Sbjct: 183 GFVSAEEYDHSVQLARRILKGEISILIEEEVEEMNRMSERLEFERAEQHRQNIEVLRRYS 242 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 K V+ + DV D V ++ +R G V+ + + K + S+++ + Sbjct: 243 GKHVVAPNIREADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLAYLI 302 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 + + + E++L E + RG++ L LA+ Sbjct: 303 EEL---RQRFGSTAREVILAEP-----------GEWESDSYRITVPQRGEKKHLLDLAQV 348 Query: 361 NAATALTSKLSQQSTVH------QRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCV 413 N + +Q ++ + LT + L + + R MECFD S+ G VA+CV Sbjct: 349 NVSGYRWDCYKRQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACV 408 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQL 472 VF P ++EYR++++ + DDY M +++ RRY + +D+ + +PD+I+IDGGKGQL Sbjct: 409 VFKNGKPAKSEYRKFHVKTVVGADDYRTMREIIYRRYRRMLDEGQSLPDLIIIDGGKGQL 468 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A + ELD+ + + G+A E L+ E E L S L V+ H Sbjct: 469 HVACDTLKELDI---YDKVCVFGLA------ERFEELYRPGESEPLVLDRRSETLKVVCH 519 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 IRDE+H I HR R+K + S L+ I G+G + ++ L++ Q + AS E+ + Sbjct: 520 IRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLMRAFKTPQRVVKASRAELIE 579 Query: 593 VPGISQGLAEKIFWSLK 609 G S+G K++ L Sbjct: 580 TLGASKGS--KLYNHLH 594 >UniRef50_A8GP33 UvrABC system protein C n=14 Tax=Rickettsia RepID=UVRC_RICAH Length = 651 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 220/651 (33%), Positives = 342/651 (52%), Gaps = 60/651 (9%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K+ L + GVYRM+D VIYVGKAK+LKKRL+ Y + KT ++A + Sbjct: 11 IKSKLIDAPERCGVYRMFDVNKQVIYVGKAKNLKKRLTHYI-KSDLDNKTLRMIANTCFL 69 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 + ++T++E EALLLE IK +QP++N+LL+DDKS+PFI L P+L +RG Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGKTLND 129 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G+ FGPF + V TL LQKIF +R C ++ + +R+RPC+QY+I RC PCV G +++ Sbjct: 130 GKCFGPFASATEVNTTLTELQKIFKLRSCTDNYFNSRTRPCMQYEIKRCYAPCV-GKINK 188 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+Y V V+ FL G+ + L +ME S + FEEAA IRD+I+A+ V K V Sbjct: 189 EDYRDLVAQVKDFLQGRTKALQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKSCV 248 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 S+ D D+I V G CV V R + G+ YFP + EV+E F+ QFY Sbjct: 249 SDIVKDADIIVVVEKNGHYCVEVFLYRAWQACGNIPYFPTSTENSTKEEVLEYFLLQFY- 307 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAG-RKINVQTKPRGDRARYLKLARTNAAT 364 Q + +P EI+++ ++DK + +++ ++ K+N+ G +A+ ++ A A Sbjct: 308 ---QKQQVPAEIIINHEINDKENMIEAIKKINNITKLNIIIPISGGKAKLVQNAAIKALF 364 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRA 423 +L L + + + + ++ L E+ R+E +D SH G+ V VV G + Sbjct: 365 SLEQYLKKFVKNQEIMLEIKALFGLHEIPERIEIYDNSHIQGKFAVGVVVVVGKAGFDKK 424 Query: 424 EYRRYNITGITP--------------------------------------------GDDY 439 EYR ++++ GDDY Sbjct: 425 EYRVFSLSSCDASLSSHAYPFSPRNLIAGSSTLTNPMDPVVRSREDDTSSTHNYAVGDDY 484 Query: 440 AAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK 498 + QVL RR + ++ K+P +++IDGGKG L K V + + H + ++K Sbjct: 485 EMLRQVLIRRLTRLKNEPHKLPSLMIIDGGKGHLGIVKEVMDKFAM-----HIPFVCMSK 539 Query: 499 GADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSL 558 G DR AG+E E F+L + P + +Q +RDE+H+ AI HR R++ SSL Sbjct: 540 GVDRNAGIEQFHMTG-KEVFTLDTNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKISSL 598 Query: 559 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 + IEGVG R++ LL Y G + + +A+++E+ KV GI++ LA IF +L Sbjct: 599 DNIEGVGETRKKALLHYFGSYKAVCDATIDELTKVNGINKSLAAMIFRTLH 649 >UniRef50_C5CDH0 Excinuclease ABC, C subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CDH0_KOSOT Length = 574 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 204/610 (33%), Positives = 310/610 (50%), Gaps = 44/610 (7%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVA 61 + A ++ + +PG+Y + G +IY+GKAK L+KR+SSYFR++ + KT L Sbjct: 2 KNKLLAKVRELPEKPGIYLFKNKKGEIIYIGKAKKLRKRVSSYFRASTHEQNGKTRELYQ 61 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 +I ++ V TE EALLLE N I ++P++NVLL+D K YP+IF+S D P +++ R Sbjct: 62 EIDDLEFIVVPTEKEALLLEANLIYQHKPKFNVLLKDSKRYPYIFISDDEFPYISITR-I 120 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + KG Y+GP+ + VR L LLQ+IF +R C ++ + RPC Y + C P + G Sbjct: 121 RDRKGFYYGPYTSITLVRNLLDLLQRIFKLRSCMDNRDCKKGRPCFLYHLKMCSAP-LAG 179 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S EY +QV FL GK V QL M+ ++NL+FE+A IRD + + R+ Sbjct: 180 EISHAEYQKQVRGFMDFLDGKTLDVRRQLERSMQRLAENLQFEKAKEIRDVLVSFDRLYS 239 Query: 242 KQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 KQ V + D I + V +L +R G +LG ++ ++ F+ Sbjct: 240 KQAVDVSESYTADFIVL----DSGIVTLLEVRGGLLLGKLTFDF-------PEGNLKDFI 288 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 QFY + + P I+ N S+ +A+ + + R L +A Sbjct: 289 QQFYYGQNHRKP-PVLIVPGLNKSEIKEIAEDFE-------YIGNPRSEEEKRLLLIASD 340 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVKRM-ECFDISHTMGEQTVASCVVFDANG 419 N L +L V Q L +L L ++ R+ E DISHT G TVAS VVF Sbjct: 341 NTIEELRIRL----KVQQSLKMAKELLGLNKIPRIIEGVDISHTQGVYTVASVVVFRNGQ 396 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVF 479 P + YRRY IT + +D+ A+ ++RRRY K PD++L+DGG QLA + Sbjct: 397 PDKISYRRYRITELNEPNDFEALKILMRRRYSKH----PPPDLLLVDGGAPQLAAVRESL 452 Query: 480 AELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHD 539 EL + +G+AK E + F L PD P L ++ IRDESH Sbjct: 453 EELGLK----KIDFIGLAKEE------EEIVFPDNRGRLKLSPDHPVLRLLTTIRDESHR 502 Query: 540 HAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 A+ HR R + +TS L+ I G+GPKR++ L++ G + ++ AS EE+ KV ++ Sbjct: 503 FAVNYHRVLRERKFSTSRLDDIPGIGPKRKRALVRAFGSVTNIKKASKEELMKVIK-NRK 561 Query: 600 LAEKIFWSLK 609 + E+I K Sbjct: 562 VVEQILAWTK 571 >UniRef50_C7N8N1 Excinuclease ABC, C subunit n=12 Tax=Fusobacteriaceae RepID=C7N8N1_LEPBD Length = 594 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 202/615 (32%), Positives = 324/615 (52%), Gaps = 28/615 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEAL 59 M ++ + K + + PGVY M + G +IYVGKAK+L+ R+ SYF N ++KT L Sbjct: 1 MEEEIKSPIKYKDIPTHPGVYLMKNERGKIIYVGKAKNLQNRVKSYFMNINSHNQKTMEL 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V I+ I+ + +E EAL+LE+N IK +P+YN+LL+D+K+YP+I + + P++ + R Sbjct: 61 VKNIKDIEFFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFTKEKFPKVEIVR 120 Query: 120 GAK--HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 K + EYFGP+P G + L KIFP+R C S+ + ++PCL+Y + C P Sbjct: 121 STKKLNENAEYFGPYPMGIFF--AMKTLLKIFPMRDCNRSMDKI-TKPCLKYYMKTCPAP 177 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 C + E+EY+ V+ + FL G D+V+ L SRM+ S +EFE A R+++ ++ Sbjct: 178 CKYKDI-EDEYSTNVKNFKNFLKGHSDKVIEMLESRMKKFSDEMEFERAINEREKLAVLK 236 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 R+ E Q + + + D DV + VL IR+GKV+ + E + Sbjct: 237 RMLETQIIEYSKEIDEDVFVFEEKRENVFLCVLNIREGKVINKNDIIISLERSQE-ENLF 295 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRK-INVQTKPRGDRA-RY 354 E + +Y + R +P I+ D LL +++ K I + R + Sbjct: 296 ERLITSYY----EKRNIPKHIICDERFMSSELLIKEWAKIEKHKEIKLHFPKINSRRLQL 351 Query: 355 LKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCV 413 L++ N + ++ V + L L L+L + R+ECFDIS+ G+ VA+ Sbjct: 352 LEMGYLNLREEVDKYYRKRRMVQEGLRNLKKELRLKSLPYRIECFDISNIQGKDAVAAMT 411 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 V EYR + IT DD+ M + L RRY K I++ K+P++ILIDGGKGQL Sbjct: 412 VALDGETTPKEYRHFKITVKDTPDDFLMMREALTRRYSK-IENDKMPNLILIDGGKGQLG 470 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A +V +L H ++G+AK E +F E E + L ++Q + Sbjct: 471 VAVDVLEKLG---KIEHTDVIGIAKRE------EEIFKSYESEPYLFEKTDETLKILQRL 521 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 RDE+H I HRK R+K S+L+ I G+GPKR++ L+K G ++ +RNA++EE+ +V Sbjct: 522 RDEAHRFGITHHRKLRSKRNVKSALDDITGIGPKRKKELIKKFGLIKNIRNATLEELMEV 581 Query: 594 PGISQGLAEKIFWSL 608 + + +A I +L Sbjct: 582 --VPENIAISIKENL 594 >UniRef50_C7LYI3 Excinuclease ABC, C subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYI3_ACIFD Length = 620 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 207/621 (33%), Positives = 318/621 (51%), Gaps = 31/621 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA-SRKTEAL 59 M D+ D L + PG Y+ D VIYVGKA++L+ R+ SYF+ S KT A+ Sbjct: 1 MMDRPD----LAAIPEAPGSYQFRDGEDRVIYVGKARNLRARVGSYFQDPRQLSPKTRAM 56 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 +A ++ V +E +ALLLE++ IK + PRYN+ LRDDKSYP I ++ G+ PR ++ Sbjct: 57 LAVASRLTWIVVPSEQDALLLEYSLIKEHHPRYNIRLRDDKSYPMIAVTVGERWPRAMIY 116 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQC---ENSVYRNRSRPCLQYQIGRCL 175 RG + YFGP+ + A RE L LL++ P+R C + + + RPCL + IGRC+ Sbjct: 117 RGKRRRGARYFGPYADAGAAREVLELLRRALPLRTCSPAKLAQHERAGRPCLYFDIGRCV 176 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 GPC+ G V E Y V+ V FL G+ ++ L + M A+ LEFEEAAR+RD++ A Sbjct: 177 GPCI-GAVDEATYRGLVDEVTGFLEGRAGSLVDALETEMHAAASRLEFEEAARLRDRLSA 235 Query: 236 VRRVTEKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + V E+Q V DLD IGV D + V+ +R G+++G + G L + Sbjct: 236 IEAVLERQSVALGHERDLDAIGVHRDELDLYLEVVRVRHGRIVGVGGARAERDSGAMLFD 295 Query: 295 VVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARY 354 + V +Y + +P I+ +++ D+L+ L GR + V T R + A Sbjct: 296 ELLDLVRSYYDDQAI--DVPPRIVARVEVAEAREATDALTSLLGRPVRVVTPYRRELAVL 353 Query: 355 LKLARTNAATALTSKLSQQST----VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 +++A NAA A +++T + LT L + L R+ECFD+SH G V Sbjct: 354 VEIAERNAALAHQRARRERATDLATRSRGLTELGELAGLGAPPVRIECFDMSHLQGRSYV 413 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD--SKIPDVILIDG 467 S VV + YR + + + DD AM +VL RR + D PD+I++DG Sbjct: 414 GSMVVMEDGLMRHGAYRHFRV-SVPHNDDVGAMREVLSRRLDRLDDRRFGGRPDLIVLDG 472 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G QL + E ++ ++ +AK E L+ E +P + AL Sbjct: 473 GAPQLNGVLRLLEERGMAGT---VPVVALAK------SFEELYVPDRSEPVRVPRGTLAL 523 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +++Q +RDE+H AI HR++R S+LE+I G+GP RR LL G + + AS Sbjct: 524 YLLQQLRDEAHRFAITYHRRRRQLDAERSTLESIPGLGPARRARLLAEFGSIYEIAEASE 583 Query: 588 EEIAKVPGISQGLAEKIFWSL 608 E+ + G+ +A + L Sbjct: 584 AELVR-AGVPARVASAVRERL 603 >UniRef50_Q83NI9 UvrABC system protein C n=2 Tax=Tropheryma whipplei RepID=UVRC_TROW8 Length = 607 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 195/611 (31%), Positives = 309/611 (50%), Gaps = 36/611 (5%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 + +PGVYR D G ++YVGKAK+L+ RL SYF + R+ +++ +++ T Sbjct: 8 EIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVA 67 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGP 131 + EAL LE+++IK + P NV L+DDK+YPF+ ++ G+ PRL + R K +FGP Sbjct: 68 DDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRR-KIQYATHFGP 126 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCLGPCVEGLVSEEEY 188 +P + +RET++LL KIF IR C + Y+ PC + QI +C GPC + +Y Sbjct: 127 YPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSL-KTTHLQY 185 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV-SN 247 ++++ + FL G+ +L L +M AS+N E+EEAA +RD+IQA + V + V + Sbjct: 186 QKRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLD 245 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D I V D +A V + G++ S+ + SE++ + Q Y Sbjct: 246 ETVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVY--- 302 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSEL---AGRKINVQTKPRGDRARYLKLARTNAAT 364 +LP I+L S + L+ L++ +I + P R L+ + NA + Sbjct: 303 -DKLSLPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERRLLETVKDNALS 361 Query: 365 ALTSKLSQQST----VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANG 419 L ++S+ H+ L L L L + R+ECFDISH G T S VVF+ Sbjct: 362 ELERHRLRRSSDYTERHRSLFELQKYLNLNSLPVRIECFDISHLSGTNTSGSMVVFENGE 421 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKA----IDDSKIPDVILIDGGKGQLAQA 475 P ++ YR +NI I +D A+M ++ RR D P +++IDGGK QL+ A Sbjct: 422 PKKSAYRHFNIH-IDQNNDTASMFSLICRRLRSLESVAQDSPDYPHLMIIDGGKPQLSAA 480 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 E+ + + ++K LE L+ LPP+S +L ++Q IRD Sbjct: 481 VGALQEVGLK-----IPVFALSK------RLEELWSPGVKTSLILPPNSESLFLLQKIRD 529 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 ESH A+ + +R + TS L I G+G ++ LL+ +R AS+E+I+ +PG Sbjct: 530 ESHRFALK-QQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISALPG 588 Query: 596 ISQGLAEKIFW 606 AEKI Sbjct: 589 FGVKTAEKIKE 599 >UniRef50_Q2GJJ1 UvrABC system protein C n=6 Tax=Anaplasma RepID=UVRC_ANAPZ Length = 614 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 207/601 (34%), Positives = 325/601 (54%), Gaps = 26/601 (4%) Query: 17 QPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETE 76 PGVY+M+ ++YVGKAKDLKKRLSSY N S +V QI ++++TVT ETE Sbjct: 26 VPGVYKMFGTEDRLLYVGKAKDLKKRLSSYLSINRMSVNVYTMVKQIVRLEITVTENETE 85 Query: 77 ALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEY---FGPFP 133 ALLLE IK +P+YN+++RDDK YP+I S +PR+ +HR K ++G Y +GPF Sbjct: 86 ALLLEAKLIKSLKPKYNIIMRDDKFYPYILFSKHKYPRIVLHRE-KRSEGRYTGLYGPFL 144 Query: 134 NGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVE 193 + R +A ++K F +R C ++ + R+RPC++Y+I C PC++ ++EE+YA+ V+ Sbjct: 145 SSVMTRHIIATIKKAFLLRSCPDNFFATRARPCIEYEIKNCSAPCMQ-KITEEDYAKAVQ 203 Query: 194 YVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS-NTGDDL 252 L+G+ ++ +L M S N ++E A RD++ A++ + E D+ Sbjct: 204 MAHKALTGQSKEIQCELFEMMCRFSNNQDYESAIVCRDRLHALKSMKECMGFQTGIHGDV 263 Query: 253 DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRT 312 D I V + C+ V+F R G GS+ YF + G +++V F+ Q Y Sbjct: 264 DFIAVYKRQDLYCMQVVFFRDGVNYGSQPYFIESVGNASDADIVNMFMLQIYNDF----- 318 Query: 313 LPGEILLDFNLS-DKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLS 371 P + +D D +++ ++ +L R+++++ D + + LAR A AL ++ Sbjct: 319 -PSVVYVDLPSDYDTNIMSTAIKQLMKREVDIRLPATRDELKAMGLARNYAMEALNRRVR 377 Query: 372 QQSTVHQRLTALASVLK-LPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI 430 + L A+ L +R+E +D SH G VV +G L+ EYR++ I Sbjct: 378 NTAQDTD-LEEFATFFDLLKAPERIEIYDNSHISGTHPYGVMVVCGKDGLLKKEYRKFKI 436 Query: 431 TGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH 490 +T GDD + M++V+ RR+ + D +PD ILIDGG+GQ + + L Sbjct: 437 NTVTNGDDCSMMHEVISRRFKEIPD--VLPDFILIDGGRGQRSAVYGELSRLG------- 487 Query: 491 PLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA 550 +AKG R AG E +F GE SL P S +H + +RDE+H AI HRK R Sbjct: 488 IPFACIAKGPGRVAGTEVFYF-SNGEKLSLDPASKLMHFLCRLRDEAHRFAITSHRKSRD 546 Query: 551 KVKNTSS-LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 S+ L I G+G + + +L Y G +Q +++A VEEI+KVPGIS LA+++ LK Sbjct: 547 GKLQFSTLLNDIPGIGKTKGKAILAYFGSIQAMKHARVEEISKVPGISLKLAKRVADYLK 606 Query: 610 H 610 Sbjct: 607 E 607 >UniRef50_A4ECP7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECP7_9ACTN Length = 601 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 186/599 (31%), Positives = 296/599 (49%), Gaps = 48/599 (8%) Query: 43 LSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY 102 + Y +K ++ + D V TE EAL+LE N I Y P +NV L+DDKSY Sbjct: 1 MRQYVTLQDERQKIPLMMQLVASFDYIVVETEHEALVLERNLIGQYHPYFNVDLKDDKSY 60 Query: 103 PFIFLSG-DTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPI--------RQ 153 PFI ++ D P + R YFGP+ + A RET+ L+K+ PI R+ Sbjct: 61 PFIAITKSDLFPAIKYTRERHKPGTRYFGPYTDSRAARETIDTLRKVIPICSASCAEWRR 120 Query: 154 CENSVYRNRS-------------RPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLS 200 C V ++ RPC Y +GR G CV G +S +YA+ V+ V FLS Sbjct: 121 CRRIVESHKGEEDIVNMICAQNGRPCFDYHVGRGPGACV-GAISPADYAKNVKRVERFLS 179 Query: 201 GKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT-EKQFVSNTGDDLDVIGVAF 259 G V+ +L S M A++ L+FE AAR++ +++ +R + +Q V + D+DVIG Sbjct: 180 GHRKDVVDELTSEMTEAAETLDFERAARVKRRLEVIRGLDDRQQVVFPSSVDIDVIGFYR 239 Query: 260 DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILL 319 + ++ V +R+G+ + + + + E+ F+ ++Y + + +P EI L Sbjct: 240 EETISAACVFVVREGRTVRTCEFILDKGLDVDEEELQSGFLKRYYDETAD---IPAEINL 296 Query: 320 DFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQR 379 L D L + L+ R ++ RG++ R L +A NA AL + + R Sbjct: 297 SVELEDAEALGEWLAGKRERSCHLHRPQRGEKHRLLDMASKNARHALMRYMMRTGYADDR 356 Query: 380 LTALASVLKL----PEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIT-GI 433 L+ P R+ECFDIS G TVAS VVF + +YRR+ I + Sbjct: 357 TNQALLELESALALPAPPLRIECFDISTLHGTFTVASMVVFTNGRADKGQYRRFKIQAEL 416 Query: 434 TPGDDYAAMNQVLRRRY--GKAIDD--SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKN 489 +D+ +M++VL RRY + D+ PD++++DGGK QL A L + Sbjct: 417 DEANDFVSMSEVLGRRYAPERMADERFGSRPDLLVVDGGKPQLTAAIKQLEALGL----- 471 Query: 490 HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 + G+AK E +F + LP S +L++I+ +RDESH AI HR+ R Sbjct: 472 DIPVCGLAKAD------EEVFVPWDETPVVLPTGSASLYLIKQVRDESHRFAITFHRELR 525 Query: 550 AKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 K S L+ + GVGP R++ ++++ G ++ LR AS +EIA+V G+ +A+ + +L Sbjct: 526 DKAMTVSVLDDVPGVGPTRKRAIMRHFGSMKRLRAASEQEIAEVRGVPADVAKAVHEAL 584 >UniRef50_D2RB48 Excinuclease ABC, C subunit n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RB48_GARVA Length = 780 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 199/729 (27%), Positives = 330/729 (45%), Gaps = 131/729 (17%) Query: 1 MSDQFDA-KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEA 58 + D D + + + +QPGVY+ D G VIYVGKAK+L+ RL++YF+ +T++ Sbjct: 58 LGDTRDLFRPASRDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQS 117 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDT-HPRLAM 117 +V + ++ TV TE EAL LE+ +IK + PR+NV+ RDDK+YP++ +S + PR+ + Sbjct: 118 MVLTARSLEWTVVSTEFEALTLEYTWIKAFNPRFNVVFRDDKTYPYVAVSLEETFPRVWI 177 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRC 174 R YFGP+ + +R +L L K FPIR C +SV+ RPCL IG+C Sbjct: 178 TRNRSARHARYFGPYAKVWPLRHSLDSLLKTFPIRTCSSSVFSKAHRTGRPCLFASIGKC 237 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQ-VLTQLISRMETASQNLEFEEAARIRDQI 233 PC+ G + E+ + VE+V L+G + ++Q+ + M+ AS+ LEFE AA++RD+I Sbjct: 238 SAPCI-GNIDPSEHRKMVEHVVGILTGSVGESYISQIKNEMKEASEELEFERAAKLRDEI 296 Query: 234 QAVRRVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 + + ++ V D + DV G D A +HV F+R G + G +++ + Sbjct: 297 AVLNTILQQNAVVFDNDVEADVFGFCGDELEASIHVFFVRAGMIRGEKNWSVERNEHISD 356 Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLD-----------------------------FNL 323 S+++ + + Y + Q T E + Sbjct: 357 SDLIADLLTRVYAEYEQNYTQNHEDTISIKKVRDAVSSTQQATATDVILRAQATKTRRER 416 Query: 324 SDKTLLADSLSELAGRKINVQTK----------------------------PRGDRARYL 355 ++T D L+ ++ + RG++ + Sbjct: 417 QERTGREDLLAPISPVPREIIVPIKISDERKQELELWLSNIRGSQVSIRVAERGEKRALM 476 Query: 356 KLARTNAATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGEQTV 409 A NA+ L +++ + + +A L + + R+EC+DIS+T G V Sbjct: 477 DRANDNASQELKRIKSSRINSIDMRTEAMNEIAKALGMSKSPLRIECYDISNTVDGSYQV 536 Query: 410 ASCVVFDANGPLRAEYRRYNITGITP---GDDYAAMNQVLRRRYGK--AIDDSKI----- 459 AS VVF+ +EYR + + G DD +A+ + L RR+ ++++ Sbjct: 537 ASMVVFEDGVARPSEYRHFAVRGEHGDGKIDDLSAVYETLLRRFKHKDVYAENRLDASDS 596 Query: 460 ---------------------------------------PDVILIDGGKGQLAQAKNVFA 480 P +I++DGGK Q AK Sbjct: 597 SDTSDTSDSSDINICDANSISNKHFSGNSLTSARHFAYKPQLIIVDGGKEQAKAAKRAMR 656 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + VS + G+AK LE ++ E S L+++Q RDESH Sbjct: 657 DAGVS----DITVCGLAKK------LEEVWLPDEDYPIIFKRSSEGLYLLQRARDESHRF 706 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 AI HRK R K S+ + I G+G R+ LL G ++ L+NAS+E++ KVPGI + Sbjct: 707 AISYHRKLRRKGSLHSTFDAIPGIGAVYRKRLLASFGSIKSLKNASLEDLQKVPGIGENK 766 Query: 601 AEKIFWSLK 609 A+ I+ +L+ Sbjct: 767 AKAIYSALR 775 >UniRef50_D2MQ80 Excinuclease ABC, C subunit n=7 Tax=Bacteria RepID=D2MQ80_9FIRM Length = 591 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 193/611 (31%), Positives = 303/611 (49%), Gaps = 38/611 (6%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 +A L + +PG Y+M + G +IYVGKAKDL R++ YF KT LV+ I Sbjct: 6 IEAKLAELPHEPGSYQMKNKYGEIIYVGKAKDLHNRVNQYFVGT-HDFKTTKLVSNIDDF 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA-K 125 D VT +E EAL+LE N IK Y+P+YN+ DD SYP+I L+ + +PRL + R K K Sbjct: 65 DFIVTASEKEALILEINLIKKYRPKYNIQFIDDSSYPYIKLTKEKYPRLLIARDTKKDKK 124 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGPFP+ A + T +LQ ++P R+C + CL Y +G+CLGPC E ++ Sbjct: 125 ARYFGPFPDVTAAKNTCKILQSLYPFRRCTTM----PKKLCLYYHLGQCLGPC-EFEINP 179 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV-TEKQF 244 + Y E V+ FL G +V L ++M A++N +E+A + ++++ + +Q Sbjct: 180 KVYDDMCEGVQRFLKGDSKEVEENLYTKMMVAAENRLYEQAQEYKVMLESIHAIVRHQQN 239 Query: 245 VSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + D D D G + +RQG +L F P + E E+F+ Q+ Sbjct: 240 IEKDNRGDRDAFAYVVDRGYIAIAGFLVRQGIILNKE--FRLRPLYGDAQEAFESFLIQY 297 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y E++L + + L I + RG + R + + NA Sbjct: 298 YQDH----PAARELVLSKEMDIQALKEVLD-------IPIFQPQRGYKVRLIDMCLHNAQ 346 Query: 364 TALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANG 419 L K Q+S + + L+ + ++ R+E FD SHT G TVASCVV++ Sbjct: 347 QQLDLKFKSVNRQESMRQEAVKDLSKLAG-KDMNRIELFDNSHTSGSFTVASCVVYEDGQ 405 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNV 478 R YR++ + D +M +VL RRY + + + + PD IL+DGG Q+ AK + Sbjct: 406 EDRKSYRKFKLHT--QNSDVDSMKEVLYRRYFRLLKEGSRFPDGILVDGGWLQIEAAKEI 463 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 +L + + +++G+ K A + EG + DS ++ ++DE H Sbjct: 464 LGQLGL---LDRIVVMGLVKDAHHNTRA---LMDGEGRELEVSKDSALFFLLTRMQDEVH 517 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR+ R+K + S L+ I G+G KR+++L K G L+NAS EEIA++ I Sbjct: 518 RVAISYHRQLRSKAQTKSVLDEIAGIGLKRKKLLWKAFGNFSHLKNASEEEIARI--IPA 575 Query: 599 GLAEKIFWSLK 609 A ++ SL Sbjct: 576 EPAHLLYKSLH 586 >UniRef50_Q8REL0 UvrABC system protein C n=10 Tax=Bacteria RepID=UVRC_FUSNN Length = 589 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 200/604 (33%), Positives = 312/604 (51%), Gaps = 28/604 (4%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 + GVY M VIYVGKAK+LK R+SSYF S KT LV I+ I+ +T+ Sbjct: 7 DIPESSGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK---HAKGEYF 129 TE +ALLLE+N IK Y P+YN+LL+D+K+YPFI +S + + + R K GEYF Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKISKEDFSSIKIVRTTKALDIKSGEYF 125 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GP+P Y +L K+F IR C + + RPCL+Y + C GPCV + +EEY Sbjct: 126 GPYP--YGAWRLKNILMKLFKIRDCNRDMKKTSPRPCLKYYMKSCTGPCVYKDI-KEEYN 182 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 + VE ++ L G +++ +L + M ASQ+++FE++ R+QI+ ++ + Q + Sbjct: 183 KDVENLKQVLKGNTSKLINELTALMNKASQDMDFEKSIIYREQIKELKSIASSQIIQYER 242 Query: 250 D-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 + D D+ A + VL +R GK+LG S + + + E +Y + Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKH- 300 Query: 309 QMRTLPGEILLDFNLS-DKTLLADSLSELAGRKINVQTKP-RGDRARYLKLARTNAATAL 366 LP ++LD + +++ +L+ +K + R L +A N + Sbjct: 301 ---ILPKSLVLDAEYENELSVVVKALTIEDSKKKEFHFPKIKSRRKELLDMAYKNLERDI 357 Query: 367 TSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEY 425 S S++ T+ + + L +L L R +ECFDIS+ G+ VAS V R EY Sbjct: 358 ESYFSKKDTIEKGIKDLHDILGLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEY 417 Query: 426 RRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVS 485 R++ I DD++ M +V+ RRY K + D + PDVILIDGG GQ+ A V L Sbjct: 418 RKFKIRCKDTPDDFSMMREVIERRYSK-LPDIEFPDVILIDGGLGQINSAGEVLKRLG-- 474 Query: 486 WDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGH 545 + LL +A E ++ E + L D AL + Q +RDE+H I H Sbjct: 475 -KIHLSELLSLA------ERNEEIYKYGESIPYVLSKDMEALKIFQRVRDEAHRFGITYH 527 Query: 546 RKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 RK R+K +S L+ I+G+G RR+ LL G + ++ AS+EE+ ++ I + +A +I Sbjct: 528 RKIRSKRIISSELDKIDGIGEVRRRKLLTKFGSISAIKKASIEELKEI--IPEKVALEIK 585 Query: 606 WSLK 609 ++ Sbjct: 586 NKIR 589 >UniRef50_Q72DX8 UvrABC system protein C n=3 Tax=Desulfovibrio vulgaris RepID=UVRC_DESVH Length = 688 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 216/665 (32%), Positives = 313/665 (47%), Gaps = 86/665 (12%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQI 66 + L T+ PGVY D G +IYVGKA+ L++R++SYFR + + KT A++ I Sbjct: 3 RPDLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTI 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAK 125 D T TE EALLLE + IK ++PRYN++LRDDK Y + + +PRL + R A+ Sbjct: 63 DTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDD 122 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G YFGPF + A RET + + FP+R+C + + NR R CL + +G+CLGPCV V Sbjct: 123 GRYFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCV-NEVPS 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-F 244 E YA +E V L LSG+ +++ L + ME ASQ L+FE AA +RD+I+A+ R E+Q Sbjct: 182 ETYAALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAA 241 Query: 245 VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 V G DLDV+GV + VLF+RQG +L RS+F G E E++ +F+GQFY Sbjct: 242 VLPGGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFY 301 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKP----------------- 347 + T+P I++ + + D+L + + V Sbjct: 302 GPQA---TIPPRIVVPWLPDEDGETGDALDGSSDAVVPVAAATTIDASLADVRTGTEVTS 358 Query: 348 -------------------------RGDRARYLKLARTNAATALTSKLSQQSTVHQRLTA 382 +G L+ A + ++ RL Sbjct: 359 LINASHAAPNVGESTQGDTLAGATGKGATHLMLETALAALRGGIVRIALPRNPAENRLVD 418 Query: 383 LA---------------------SVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 +A L L R+E D+SHT G T VVF+ P Sbjct: 419 MAMSNAREEARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTGGRNTRVGMVVFEDGKP 478 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 YR Y DDY + RR PD++L+DGG+GQLA F Sbjct: 479 FPEAYRTYAFEDGDG-DDYGTLAAWAGRRVESG---PPWPDLLLVDGGRGQLAAVVRAFE 534 Query: 481 ELDVSWDKNHPLLLGVAK------GADRKAGL--ETLFFEPEGEGFSLPPDSPALHVIQH 532 E + + +AK ADR+AG + +F L +P L +QH Sbjct: 535 ECGMGAA---FAVASIAKARTEEGRADRRAGNVSDRIFLPGRANPLPLRAGAPELLFLQH 591 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 +RD HD++IG HR+ RA T L+ +EG+GP + L + LQ + +A VE +A Sbjct: 592 VRDTVHDYSIGKHRRARAGAALTGELQRVEGIGPATARALWERFDSLQAMADAGVEGLAA 651 Query: 593 VPGIS 597 VPG+ Sbjct: 652 VPGVG 656 >UniRef50_C1SGC9 Excinuclease ABC, C subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC9_9BACT Length = 599 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 198/614 (32%), Positives = 315/614 (51%), Gaps = 29/614 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQ 65 K LK + PG+Y G ++YVGKAK+L+ R+SSYF +T ++ + Sbjct: 2 FKPVLKEIPENPGIYLYLGKNGEILYVGKAKNLRNRVSSYFVDFESKPIRTRKMLQSARD 61 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I VT +E EALLLE+N IK +PRYNV L+D KSYPFI ++ + +P+L + R K Sbjct: 62 IRFVVTTSEAEALLLENNVIKTEKPRYNVRLKDSKSYPFILITEEDYPKLRITRE-SGKK 120 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 GEYFGPF + ++R + L K+FP+R C +S +R + CL++QI +CLGPC E ++S+ Sbjct: 121 GEYFGPFVDVGSLRSIVDELLKVFPLRSCGDSKFRE-GKLCLKFQIRKCLGPC-ENMISK 178 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y Q VE +R F G D V + + M S ++ FEEAA +RD+++ + R+ KQ V Sbjct: 179 NRYNQLVEQIREFFRGNVDTVKSHMEQEMMRLSDDMNFEEAAIMRDRLRGLSRLFTKQTV 238 Query: 246 SNTGD--DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 D +DV ++ + +FIR G+++GSR+ + S V+E+FV Q Sbjct: 239 VMPDDTSSIDVFVPHSFENVSGITAMFIRGGRLIGSRTEILE--DDENPSGVIESFVLQM 296 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y S +R P + + L D L ++L +LA +K+ + RG A KLA N Sbjct: 297 Y---SVLRNYPQMVYIAG-LEDSGSLQEALEKLADKKLRFR--KRG-YAAVEKLALDNGR 349 Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423 L++ S L ++ V R+EC DISH G TV +V +A Sbjct: 350 VQTQLYLNKLSKRKDITEKLKKIIGAESVSRIECVDISHLGGSGTVGVSIVAVDGEFSKA 409 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIP-DVILIDGGKGQLAQAKNVFAEL 482 +YR+Y I DD+ ++ ++ R++ + S+ P D+ ++DGG GQL A +E Sbjct: 410 QYRKYRIRTAE-NDDFISIYELFSRKFENIQEGSEPPADLYIVDGGIGQLNSAMRAASEK 468 Query: 483 DVSWDKNHPLLLGVAKG-------ADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 + + + ++KG ++ +E++ +L + P L IQ +RD Sbjct: 469 GYTAN-----FISISKGRSIKFMKDKQEQSIESVHIPGRKNPLNLKKNDPLLLFIQKVRD 523 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 ESH AI RK K S L +EGVG K + +L+ + ++ + ++I++ Sbjct: 524 ESHRFAIDYSRKLALKNFKKSPLLMLEGVGEKTVRKVLEVFPDIYERKDLTAKDISEYCS 583 Query: 596 ISQGLAEKIFWSLK 609 I + A I +K Sbjct: 584 IPEKTAAVIELFIK 597 >UniRef50_C5NYN4 Excinuclease ABC subunit C n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYN4_9BACL Length = 582 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 183/610 (30%), Positives = 310/610 (50%), Gaps = 36/610 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + L+ + PG Y D G +IYVGKAK+LK R+ SYF ++KT+ LV++I+ Sbjct: 3 LTLQKKLELLPDNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQTLVSKIE 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG-AKH 123 ++ + ++E EALLLE+N IK Y+P +N+ L+DDKSYP++ ++ + HPRL M R K+ Sbjct: 62 DLEYIIVNSEKEALLLENNLIKKYRPYFNIRLKDDKSYPYLMITKEEHPRLLMTRKYKKN 121 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K YFGP+ + + E +L KI+P+R+C RPC+ YQIG C+GPC + + Sbjct: 122 NKNIYFGPYVDIKSATEVKKILDKIYPLRKCN----PVEKRPCMYYQIGECIGPCAK-KI 176 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + ++Y Q+ ++ FL+G ++LT L S+++ +NLEFE A +I + I+++ + Q Sbjct: 177 TADDYKSQISKIKSFLTGNTKEILTDLQSKLQEHIKNLEFEAAGQIHNYIKSIEVSVQNQ 236 Query: 244 FV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V +T D D IG F+ C+ + R G ++ + + E++ +++ Q Sbjct: 237 VVADSTNVDRDYIGFTFNNDYICIQIFLSRLGNIIERKVEYF--NLYDTPEEILYSYLLQ 294 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 +Y + LP EI +D D LL+D + V RG+ + L + NA Sbjct: 295 YY----ALNKLPKEIYIDEV--DDNLLSDVV------DCKVIIPKRGNHRKILDTVKENA 342 Query: 363 ATALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418 L + L+ ++ + L +A L + + ++ FD S+ MG V+ V F Sbjct: 343 TYYLNNNLAIEELKERKLQVTLNNIAEKLGVNSINSIDAFDNSNIMGVDAVSVKVNFTNG 402 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 YR++ I +D M +VL R Y +++ ++++DGGK L A +V Sbjct: 403 KKNTYNYRKFKIDESMGINDVQTMKEVLYRNYKDRKTNTE---LLIVDGGKNHLNVAIDV 459 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 + D ++G+AK + E P S ++ I+DE H Sbjct: 460 VHN---TLDLKQIKIIGLAKNDKHIT---EYIITDDYEIIEFPKTSAEYLFLKQIQDEVH 513 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 AI HR + K SSL+ I+G+G R+ +LLK L+ ++NA E++ K+ GI + Sbjct: 514 RFAITYHRATKNKNMYKSSLDDIQGIGKVRKNLLLKSFSSLEEIKNAPDEKLLKL-GIPK 572 Query: 599 GLAEKIFWSL 608 + + + L Sbjct: 573 DVIKNLKKRL 582 >UniRef50_C3XLG8 Excinuclease abc subunit c n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLG8_9HELI Length = 618 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 192/623 (30%), Positives = 312/623 (50%), Gaps = 38/623 (6%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-------SNLASRKT 56 + LK + + GVY +D G ++YVGKAK+LK R+ SYFR + S + Sbjct: 9 SQNLLETLKKIPNSSGVYHYFDTQGKLLYVGKAKNLKHRIKSYFRFTPNLAPAPNLSPRI 68 Query: 57 EALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRL 115 +V+QI + V E +AL+LE++ IK +P+YNVLLRDDK+YP++ + + PR+ Sbjct: 69 TQMVSQIAHLRYIVVENENDALILENSLIKQLKPKYNVLLRDDKTYPYLCVDLQEDFPRI 128 Query: 116 AMHRGAKHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRC 174 + R +G YFGPF +G R+ L + +IFP+ Q E+ +N + CL YQI RC Sbjct: 129 LLTRKIFKKQGLRYFGPFSSG--ARDLLDSIYEIFPLAQKES--CKNGKKACLFYQIHRC 184 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 L PC EG +S ++YA+ ++ + ++L L +M SQNL FEEA +RD+I Sbjct: 185 LAPC-EGKISTKDYAKILQNALECVE-NPKKILAPLEQKMLQLSQNLRFEEALILRDRIA 242 Query: 235 AVRRVTEKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 ++ +T V DLD+ + + A + F+R GK++ S + K G + Sbjct: 243 KIKNLTPLSSVDFANLVDLDIFALVCEDKRAVLVKFFMRNGKIISSATQNLKSELGFDSL 302 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSD-KTLLADSLSELAGRKINVQTKPRGDRA 352 + + + Y + + +P +IL+ F+L + L L E G+K+ + GD+ Sbjct: 303 SIYKQALINHYS--NTLPLVPKQILIPFDLGESTQELEYFLQEKVGKKVQIHFPKSGDKK 360 Query: 353 RYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASC 412 R +LA N L + + + L L + P R E FD SH G Q V + Sbjct: 361 RLCELAIQNGKEILRLEQNDNEEIFNALKTLFCLQNTPY--RFEVFDTSHHKGTQCVGAM 418 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL 472 VV+D ++ YR Y + D+Y M ++L RR +S PD+ ++DGG GQ+ Sbjct: 419 VVYDGLDFIKESYRHY---LLEGKDEYTQMREMLTRRIQDFQKESP-PDLWVLDGGAGQI 474 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGA-----DRKAGLETLFFEPEG-EGFSLPPDSPA 526 AK + V+ + ++G+AK R G E + + L Sbjct: 475 NLAKELLESAGVNLE-----VIGIAKEKIDSKTHRAKGGAKDILRDENLKEYRLSMSDKR 529 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 L +Q +RDE+H AI H+K++ K S L +I+G+G + LL Y G + + A Sbjct: 530 LQFLQKLRDEAHRFAITFHQKQKQKTMQHSKLLSIKGIGKAIQNKLLAYFGSFEAIEKAD 589 Query: 587 VEEIAKVPGISQGLAEKIFWSLK 609 ++E+ KV +S+ A+ +F +L+ Sbjct: 590 LDELEKV--LSKTFAKSVFNALR 610 >UniRef50_Q14NX3 Putative uvrc protein excinuclease abc subunit c n=1 Tax=Spiroplasma citri RepID=Q14NX3_SPICI Length = 593 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 180/617 (29%), Positives = 303/617 (49%), Gaps = 34/617 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 MS++ K ++ + ++PG Y Y+ V+YVGKAK+L+ R+SSYF + + KT LV Sbjct: 1 MSEKLSLKEQVEILPAKPGCYLFYNNYHQVLYVGKAKNLRSRVSSYFNK-VYNYKTTRLV 59 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 +I +++ +T TE EAL+LEHN IK Y+P+YN+LL DDK YP+I ++ + P+ R Sbjct: 60 QEIVRLETIITKTEKEALILEHNLIKQYKPKYNILLNDDKHYPYIVITKEKDPQYLYVRN 119 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 Y+GPFP G RE + +L++++P+R+C+ ++ +PCL Y I +C G CV+ Sbjct: 120 IHQKYARYYGPFPEGSHAREIIKVLERLYPLRRCKGNL----GKPCLYYHINQCSGACVK 175 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 VS + Y + ++ V F G + L RM A+ NL+FEEA +++ I+ + Sbjct: 176 -TVSPDYYIKMIKKVHSFFKGNFTETKKLLEKRMLQAADNLQFEEAHKLKLLIRNLDWTL 234 Query: 241 EKQFV--SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 Q V N DDLDVI + A + LF R GK+ + + + E+ Sbjct: 235 SSQTVEMLNQNDDLDVISLYQTAEHLVLTTLFYRAGKLSYKDYEYYHLDFAEDCQELYRL 294 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 ++ Y Q LP +I+++ ++ L + V +KLA Sbjct: 295 YLQNIY----QKNILPTKIIVNEIIALPELNLLFDN-------RVFHPKTPIEKTIMKLA 343 Query: 359 RTNAATALTSKLS---QQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVV 414 N+ + + ++ + L L +L L E+ +E DI++ E +V Sbjct: 344 TENSYESYVQYQTTAQRELNNAEVLKELQMLLDLSELPYLIEMIDIANINDEFVTGGVIV 403 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK-AIDDSKIPDVILIDGGKGQLA 473 + R +YR+YN+ I DD + V+ RRY K ++ +P++I++DGG Q+ Sbjct: 404 YKNGRLSRNDYRKYNL-EIPDQDDTHRIAAVVTRRYQKVIQEEQALPNLIIMDGGIQQVN 462 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A+LD++ ++G+ K K + E L S + I Sbjct: 463 ACLKELAKLDLA-----IPVIGLVKNNQHKTDH---LLNLKKEKIYLDKSSRLFLFLTRI 514 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 +D+ H AI R+++ K TS LETI G G +R ++L + + ++ AS E+ +V Sbjct: 515 QDDVHHFAITSFRRRQTKALTTSILETIPGFGKQRIKLLNHHFESIGAIKKASDAELYQV 574 Query: 594 PGISQGLAEKIFWSLKH 610 S+ L E + L+H Sbjct: 575 LH-SKKLIENLRKFLEH 590 >UniRef50_Q2FPC6 UvrABC system protein C n=16 Tax=Archaea RepID=UVRC_METHJ Length = 520 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 181/549 (32%), Positives = 276/549 (50%), Gaps = 38/549 (6%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 L T+ +PG Y+ D GT++YVGKAK+LKKR+SSYF+ + + + LV+ I+ IDV V Sbjct: 6 LTTIPEEPGCYQFKDETGTILYVGKAKNLKKRVSSYFQKKSITPRIDILVSLIRDIDVIV 65 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK-GEYF 129 T +E EAL+LE+N IK YQP+YN+ L+D KSY FI +S D PR+ + R K G + Sbjct: 66 TSSEVEALILENNLIKKYQPKYNIDLKDAKSYAFIQISNDPFPRIGIARDRTVKKTGTLY 125 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + + L +++ F +R C+ + R CL+ +G C PC G +SE EY Sbjct: 126 GPFVSAAERDQILKFVKQTFHLRTCK----KMTKRACLRSHLGTCAAPCT-GKISEPEYQ 180 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 V+ L GK ++ L MET + E+E+A IRD+I A+ ++E+Q+V Sbjct: 181 YLVKSADYLLKGKSQDLIYDLRKEMETFAAAEEYEKALVIRDRIAAIENLSERQYVQRQK 240 Query: 250 D-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D +I + + + +G + + E + ++ F+ Q+Y Sbjct: 241 KSDEHIINYLVSGDTVYLILFHVERGSLTSKEEFVFP-----ETEDFLDEFILQYYSST- 294 Query: 309 QMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTS 368 P E++L + + + L+ + G + + +G++ L LA N + Sbjct: 295 ---KPPNELILPSLPG--SGMEEYLTHIRGSHVTLTIPKQGEKKHLLDLAYKNLEVSFF- 348 Query: 369 KLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 T RL L L + +ECFDISH G TVAS V F P + YRR Sbjct: 349 ------TGKMRLAELGEALHMDTAPEVIECFDISHLRGTGTVASMVSFRDGKPDKRNYRR 402 Query: 428 YNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 Y I P DDYAAM +V++RRY + + + S +PD+I++DGG GQL A + EL + Sbjct: 403 YKINSAGPSDDYAAMAEVVKRRYSRLLREKSPMPDLIVVDGGPGQLKSAHAILEELSL-- 460 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 ++ +AK E ++ S+ SPA +IQ IRDE+H AI + Sbjct: 461 ---PIPIISIAKRE------EEIYIPGRNTPLSIQKKSPASLLIQEIRDEAHRFAITYQK 511 Query: 547 KKRAKVKNT 555 K R K Sbjct: 512 KLRQKSIKE 520 >UniRef50_Q8EWS6 UvrABC system protein C n=1 Tax=Mycoplasma penetrans RepID=UVRC_MYCPE Length = 589 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 176/614 (28%), Positives = 305/614 (49%), Gaps = 34/614 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M++Q K LK + +PG Y D G VIYVGKA DL R+ YF + KT+ L Sbjct: 1 MNEQ--IKDKLKKIPHKPGCYLWKDKNGIVIYVGKAVDLANRIKQYFLKDR-DLKTKKLA 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 +I +D V + E E+LLLE+N I Y+P+YN+LLR+ ++P+I ++ + HPR+ Sbjct: 58 NEICDVDYVVVNNENESLLLENNLIAKYKPKYNMLLRESNAFPYILVTKEEHPRILYSHD 117 Query: 121 -AKHAKGEYFGPFPNGYAVR-ETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 K KG Y+GPF N + E + +IFP+R+C + ++ C+ Y IG+CLGPC Sbjct: 118 STKKIKGTYYGPFANSNIKKYELYNFINRIFPLRKCN----KLPNKKCIYYDIGQCLGPC 173 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 ++ V+ ++Y ++ + F SGK + QL + A++ L FE++ + + + ++ Sbjct: 174 IK-KVTRQDYEPYLKEINDFFSGKSKSIDEQLEKKEIQAAEKLMFEDSQKYLELRKNLKM 232 Query: 239 VTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 +E+Q + + +D D+IG + + + G +L Y +EL E++ Sbjct: 233 FSERQDIIFSQKNDEDIIGFYCKENVISIVIFKYVNGSLLSK--YDLITVFYSELDEILL 290 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 T + ++Y + + LP + L + L++SL KI +G + + Sbjct: 291 TLIYEYYSKIAI--ELPKTVYLSLSDEKLKTLSESL------KIKFLNPSKGVKKDVMDT 342 Query: 358 ARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 A NA + +K Q Q+ L L +L + ++ RME FD S+ V + V Sbjct: 343 AFNNAVEIMKNKYLQLISNQNRELNSLEELQKLLDIKDLYRMEIFDNSNIFNTNKVGAMV 402 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQL 472 V++ + EYR++NI DY M +V+ RRY +IP++I++DGGK Q+ Sbjct: 403 VYENGVKNKNEYRKFNIKDEDANSDYDYMKEVIYRRYKNNTASFGEIPNLIIVDGGKPQV 462 Query: 473 AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQH 532 A L++ + ++G+AK K + + L S + + Sbjct: 463 KAALESLKFLELD---SIIPVIGLAKDDKHKTDR---IVKWDFSEIKLDKKSDLYFFLLN 516 Query: 533 IRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 I+DE H AI +R K++K +SL I+ +G R + LL+ L ++ ASVEE+++ Sbjct: 517 IQDEVHRFAISFYRNKKSKSLFENSLYKIKNLGKTRIEKLLEKYETLDKIKEASVEELSQ 576 Query: 593 VPGISQGLAEKIFW 606 + + +A++I Sbjct: 577 I--VPIEVAKEIKK 588 >UniRef50_A9BGW2 UvrABC system protein C n=1 Tax=Petrotoga mobilis SJ95 RepID=UVRC_PETMO Length = 574 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 189/607 (31%), Positives = 319/607 (52%), Gaps = 41/607 (6%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL--ASRKTEALVAQIQQ 65 ++ L + +PGVY + G IY+GKAK+LK R+SSYF + KT ++ + Sbjct: 4 RSILNNIPKKPGVYIFKNNKGDPIYIGKAKNLKNRVSSYFNKKNYIGNEKTYEMLEKATN 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D +T E +A +LE N I +++P+YN++L+D + YP+I ++ + P++ R K K Sbjct: 64 LDYIITSNENQAFILEANLIYIHKPKYNIMLKDTRVYPYILVTDEQFPKIKYIRTKKEEK 123 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 G+++GP+ + V++ + +LQ ++ IR C+ + +S+PC Y +GRC GPC V E Sbjct: 124 GKFYGPYSDVKFVKDVIEVLQSVYKIRSCDRDL-GRKSKPCFLYHLGRCYGPC-YKDVDE 181 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y + VE V+ LSG ++V L M ++ +E+AA++RD + + + E+ V Sbjct: 182 TVYQESVEKVKKVLSGDIEEVKNYLQKAMMDYAKIKNYEKAAQMRDTLFKLENLFEEVAV 241 Query: 246 S-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 G +LD+I VL +R+G ++ S+ + +E F+ Q+Y Sbjct: 242 EYKNGKNLDIIMYEPP----VYLVLIVRKGYLISKLSFTMEGT--------LEDFLYQYY 289 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + + P I +N + D L E ++I G ++ ++A TN Sbjct: 290 I--VRKNEPPSLISTLYNEEISPEILDFLKEKGLKRIE----KIGKSSKIYEMAYTN--- 340 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRA 423 L ++ +Q + L +L L + + +E DISH G TVAS V F+ P + Sbjct: 341 -LQEEIKRQKDLSFALKQAKEILSLKKEPKIIEGIDISHLQGLYTVASLVRFENGKPKKE 399 Query: 424 EYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELD 483 YR+Y + I DD+ ++ V++RRY K ++PD++ IDGGKGQ+ A E+ Sbjct: 400 GYRKYRLDDIKAPDDFESIRTVIKRRYQKH----ELPDLLFIDGGKGQVNSAVEALKEIG 455 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 S ++G+AK E + F + LP D P L ++ ++RDE+H AIG Sbjct: 456 YSLK--DVDVVGIAKED------ERIVFPGDIPDLHLPLDHPVLRLLIYVRDETHRFAIG 507 Query: 544 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 603 +R R+K + L+ I G+GPKR++ L+K+ GG+Q L AS+EEI+KV S+ +A++ Sbjct: 508 FNRSLRSKRFEKTKLDDIYGIGPKRKKELIKHFGGIQKLLEASIEEISKVVK-SEKIAKR 566 Query: 604 IFWSLKH 610 I SL Sbjct: 567 IKESLGE 573 >UniRef50_Q2Z008 Exconuclease ABC subunit C (Fragment) n=1 Tax=uncultured Chloroflexi bacterium RepID=Q2Z008_9CHLR Length = 500 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 176/508 (34%), Positives = 282/508 (55%), Gaps = 35/508 (6%) Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 Y+GP+ + +AV +TL +L++IFP C+ + +R CL Y I C PC+ G+ Sbjct: 3 DDGARYYGPYTSVWAVHQTLDVLRRIFPYLTCDREITGGDARACLYYDIKLCTAPCI-GM 61 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +++ Y Q ++ + FL G+ + ++T+L + M A++ L FE AA +RDQIQA+ RV EK Sbjct: 62 INQAGYRQMIDDLGQFLEGRTEPIVTRLRADMNQAAEALNFERAAALRDQIQAIERVVEK 121 Query: 243 QFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V ++ D DV+ +A G ACV V FIR GK++G + + + ++V+ F+ Sbjct: 122 QKVVSSDYIDSDVVAMARTDGEACVQVFFIRSGKLIGREYFLMEGAAESPDADVITGFLK 181 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGR-KINVQTKPRGDRARYLKLART 360 QFY Q +P E+LL + + ++ + L+ G K+ + G + +++A Sbjct: 182 QFYDQ---APNVPPEVLLPTEIEEMNIIREWLNSRRGGQKVELHIPRLGPQQELMQMAAE 238 Query: 361 NAATALTSKLSQQS----TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVF 415 NA+ L++ +Q Q L L + L LPE R+EC+DIS+T G V S VVF Sbjct: 239 NASATLSALQAQWQADTHRQEQALAELQTALDLPEAPNRIECYDISNTQGTAAVGSMVVF 298 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IP 460 + P ++ YRR+NI ++ DD+A+M +VL RR+ + +P Sbjct: 299 EQGVPKKSLYRRFNIRSVSGPDDFASMEEVLTRRFSRWQATQDASQAPGKKPDPAFSLLP 358 Query: 461 DVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSL 520 D++L+DGGKGQL++A+ V +++ L +AK E LF + E L Sbjct: 359 DLLLVDGGKGQLSRAEAVLERFELTG---RFFLASLAK------HNEELFIPGQSESLLL 409 Query: 521 PPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQ 580 P S AL+++Q +RDE+H +AI HR++R K S L+T+ G+GP RR+ LL + GGLQ Sbjct: 410 PRHSQALYLVQRVRDEAHRYAITSHRQRRDKAGIASQLDTVPGIGPMRRKALLAHFGGLQ 469 Query: 581 GLRNASVEEIAKVPGISQGLAEKIFWSL 608 +R AS EE+ +PGI+ LA+ I +L Sbjct: 470 QIRQASTEELLTIPGITIKLAQAIRETL 497 >UniRef50_D2RRA5 Excinuclease ABC, C subunit n=2 Tax=Halobacteriaceae RepID=D2RRA5_9EURY Length = 597 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 310/629 (49%), Gaps = 64/629 (10%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + K++ +PGVY+ A GT +YVGKA DL+ R+ SY ++ + + +V + +I Sbjct: 6 VRERAKSLPREPGVYQFR-AEGTTLYVGKAVDLRSRVRSY--ADPRTARIRRMVDRADEI 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 ++ VT TET+ALLLE N IK +QPRYNV L+DDKSYP + L+ PR+ + R Sbjct: 63 EIAVTDTETQALLLEANLIKRHQPRYNVRLKDDKSYPMVQLTDHEAPRIEITRDPDGEAQ 122 Query: 127 E-------------YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR 173 FGPF N V + L++ + +R C + Y R RPCL Y++G Sbjct: 123 GASSASGGAASGPTVFGPFTNKGQVETVVKALRETYGVRGCSDHKYSGRDRPCLDYEMGL 182 Query: 174 CLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQI 233 C PC + E YAQ V V F G+ + L ME A+++ FE AA +RD++ Sbjct: 183 CTAPCTR-EIDLESYAQDVTAVERFFEGETGILADPLRREMEAAAEDQNFERAANLRDRL 241 Query: 234 QAVRRVTEK--QFVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGG 289 + V + + V + GD+ DV+GVA + A V L +GK++ + + P Sbjct: 242 ETVETFHGEGGEAVQSVGDERAVDVLGVAIEGEDATVARLRAERGKLVDRDRHTLEAPAA 301 Query: 290 T-------ELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKIN 342 + V+ F+ Q+Y + R LP +LL D + + E G ++ Sbjct: 302 EGAGTEEGGVPAVLAAFIVQYYAE----RDLPDALLLPERHGDDEV--AAWLEAEG--VS 353 Query: 343 VQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISH 402 V+ G A+ + LA NA + + LA L++ +R+E FD+SH Sbjct: 354 VRVPGAGREAKLVDLALKNARRNVGGR--------DECGMLADALEIDAARRVEGFDVSH 405 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID---DSKI 459 G+ V S V F +A+YRR +T DDY M +L R +A++ D Sbjct: 406 AQGKSAVGSDVTFVDGSAEKADYRRKKLT--DQNDDYDNMRALLEWRASRAVEGRDDRPD 463 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++LIDGG+GQL A++ A + + +AK +R + F S Sbjct: 464 PDLLLIDGGEGQLEAARDALAAVG-----WDVPAVALAKAEERVVTPDRTF--------S 510 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 P D+P LH++Q +RDE+H A+ H+ R + + L+ + GVGP+ R+ LL G + Sbjct: 511 WPSDAPHLHLLQRVRDEAHRFAVQYHQTVRDE--VKTVLDDVPGVGPETRKRLLGRFGSV 568 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + +R ASV++I V GI + AE I L Sbjct: 569 ENVREASVDDIESVEGIGEKTAETIKSRL 597 >UniRef50_A5M6P1 Excinuclease ABC subunit C n=1 Tax=Streptococcus pneumoniae SP14-BS69 RepID=A5M6P1_STRPN Length = 553 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 174/471 (36%), Positives = 261/471 (55%), Gaps = 27/471 (5%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K+ L+ + + PG Y D GT+IYVGKAK+L+ R+ SYFR + KTEALV++I Sbjct: 5 IKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGS-HDTKTEALVSEIVDF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT + EALLLE N IK +P+YN++L+DDKSYPFI ++ + +PRL + R K G Sbjct: 64 EFIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGG 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG--PCVEGLVS 184 YFGP+P+ A E LL +IFP R+C N S+ C Y IG+C+ C + + Sbjct: 124 LYFGPYPDVGAANEIKRLLDRIFPFRKCTNP----PSKVCFYYHIGQCMAHTICKKDEI- 178 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 + + V FL G+D++++ +L +M A+Q +EFE AA RD IQA+ + KQ Sbjct: 179 --YFKSMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQR 236 Query: 245 VS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V + DV G D G CV V F+RQGK++ P + E T+VGQF Sbjct: 237 VMAKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLF--PYFNDPDEDFLTYVGQF 294 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 Y + S + +P E+L+ ++ ++ + A S + RG++ + + LA NA Sbjct: 295 YQEKSHL--VPNEVLIPQDIDEEAVKALVDS-------KILKPQRGEKKQLVNLAIKNAR 345 Query: 364 TALTSKL----SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANG 419 +L K + L +L++P R+E FD S+ MG V++ VVF Sbjct: 346 VSLEQKFNLLEKSVEKTQGAIENLGRLLQIPTPVRIESFDNSNIMGTSPVSAMVVFVNGK 405 Query: 420 PLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGK 469 P + +YR+Y I + DDYA+M +V+RRRYG+ ++ PD+I+IDGGK Sbjct: 406 PSKKDYRKYKIKTVVGPDDYASMREVIRRRYGRVQREALTPPDLIVIDGGK 456 >UniRef50_Q255T2 UvrABC system protein C n=17 Tax=Chlamydiaceae RepID=UVRC_CHLFF Length = 604 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 194/605 (32%), Positives = 313/605 (51%), Gaps = 29/605 (4%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQIDVTV 70 K + PGVY M D+ G V+Y+GKAK+L+ R+++YF+ SR + L+ + I+ + Sbjct: 9 KIIPPSPGVYLMKDSSGEVLYIGKAKNLRNRITTYFQKQGDSRERIPFLMKKTTDIETIL 68 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG---AKHAKG 126 ETEALLLE+N IK Y P+YNVLL+DDK++ + +S PR+ R K Sbjct: 69 VSNETEALLLENNLIKKYHPKYNVLLKDDKTFFCLAISLSHPWPRIDAIRTKAVTSSKKQ 128 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 FGP+ + A + L ++ + FP+R C N + R RPC+ Y++ RCL PCV S+E Sbjct: 129 IVFGPYVSAEACQTLLEVIGQWFPLRTCSNREFSTRKRPCILYEMKRCLAPCV-NFCSQE 187 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 EYA+ +E LFL G+ +++ +L +E ASQ +FE+A ++ +++ KQ V Sbjct: 188 EYAETLEKAVLFLKGQVSEIIQKLEKSIEKASQEQKFEQAGMYYRTLKLIQQAMVKQHVE 247 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 ++D IG+ + VL IR GK+LG+R + P E S+++ +F+ Q+Y Sbjct: 248 KFHFQNIDAIGLYRKHQETVITVLTIRSGKLLGARHF-PFSENAQEDSDLLSSFILQYY- 305 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + +P EIL F+L+ L E +++ G L LA+ NA Sbjct: 306 --ANQPHIPKEILTPFSLNIPDLPHLLNKE---APPRIRSPKTGYGKELLNLAKNNAEMH 360 Query: 366 LTSKLSQQSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 + + + +LK R+EC+D +H G V +V++ N Sbjct: 361 AQ---TSVQSSVLPYEEMKKILKTQDYPYRIECYDNAHLQGSHAVGVYIVYENNALSPKN 417 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDV 484 YR + I+ +D AA ++VL RR+ S +PD+I+IDGG+ Q +QAK +L++ Sbjct: 418 YRTFAISSSAH-NDLAAFHEVLSRRFSST--SSPLPDMIVIDGGRLQYSQAKKTLKKLNL 474 Query: 485 SWDKNHPLLLGVAKGADRKAG---LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 + ++ +AK A +G E LF + +G LPP S L Q +RDE+H A Sbjct: 475 TG----IQIVSIAKEASNHSGSLRHEKLFCDIFPQGIQLPPTSKLLQFFQKLRDEAHRFA 530 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I HRKKR++ E I G+G +R+ LLK + + AS E+ +PG+++ Sbjct: 531 ISKHRKKRSRDLLL-PQEKIAGIGEVKRKRLLKKFKSWKQVMQASQGELETIPGLTKKDI 589 Query: 602 EKIFW 606 +++ Sbjct: 590 KQLLA 594 >UniRef50_A4FBL9 UvrABC system protein C n=26 Tax=Actinomycetales RepID=UVRC_SACEN Length = 717 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 179/497 (36%), Positives = 261/497 (52%), Gaps = 24/497 (4%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + T+ PGVYR +DA G VIYVGKAK L+ RLSSYF + +T + Sbjct: 1 MADPSTYRPAPGTIPDAPGVYRFHDAEGRVIYVGKAKSLRSRLSSYFADLSGLHPRTRQM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V + TV TE EAL LE+++IK Y PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VTTATGVRWTVVGTEVEALQLEYSWIKEYDPRFNVRYRDDKSYPVLAVTLHEDFPRLYVT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG + YFGP+ + +A+RETL +L ++FP R C V++ RPCL IG+C Sbjct: 121 RGPRRKGVRYFGPYAHAWAIRETLDMLLRVFPARTCSAGVFKRHSQIGRPCLLGYIGKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V +E+ + VE F +G+ D ++ +L M AS+ LEFE AAR+RD ++A Sbjct: 181 APCV-GRVDADEHRRIVEDFCDFFAGRTDTLIRKLDREMRQASEELEFERAARLRDDLEA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DVI A D A V V IR G+V G R + T + Sbjct: 240 LRRAMEKQAVVLGDGTDADVIAFADDELAAAVQVFHIRGGRVRGQRGWVIDKVEETGTAA 299 Query: 295 VVETFVGQFYLQGSQM--------RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 + E F+ QFY + + + +P E+L+ + + + LS L G ++ V+ Sbjct: 300 LAERFLTQFYGEQAALAEQADAGGTPVPREVLVPELPPECEAITEWLSGLRGGRVAVRVP 359 Query: 347 PRGDRARYLKLARTNAATALTSKLSQQ----STVHQRLTALASVLKLPEVK-RMECFDIS 401 RGD+ ++ NA A T ++ + L L L L R+EC D+S Sbjct: 360 QRGDKRALMETVERNAKEAFTQYKLRRAGDLTARSAALQELQDALGLDTAPLRIECIDVS 419 Query: 402 HTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPD 461 H G VAS VVF+ P ++EYRR+ + G D ++ +V+RRR+ + + ++ P Sbjct: 420 HVQGTDVVASLVVFEDGVPRKSEYRRFAVREGAEGGDVGSIAEVVRRRFARYLKETAPPQ 479 Query: 462 VILIDGGKGQLAQAKNV 478 +GG G V Sbjct: 480 ----EGGNGSAGATAAV 492 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 10/154 (6%) Query: 452 KAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFF 511 + + P++++IDGG Q A + EL ++ ++G+AK LE ++ Sbjct: 553 RPRKFAYPPNLLVIDGGAPQANAAADALTELGIT----DVAVIGIAK------RLEEVWL 602 Query: 512 EPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQM 571 E E LP S AL+++Q +RD +HD AI HR+KR+K +S+L++I G+G RR Sbjct: 603 PDEAEPVILPRTSEALYLLQRVRDAAHDFAIRYHRQKRSKRMKSSTLDSIPGLGEARRTA 662 Query: 572 LLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 605 LLK+ G L+ LR A+VEEI+ VPG Q AE + Sbjct: 663 LLKHFGSLRRLRQATVEEISAVPGFGQRTAETVH 696 >UniRef50_C8P3R6 Excinuclease ABC, C subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R6_ERYRH Length = 590 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 177/616 (28%), Positives = 297/616 (48%), Gaps = 52/616 (8%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + LK + +PG Y M + G +IYVGKAK LK R+SSYF KT +V QI Sbjct: 5 TIEEKLKRLPMEPGCYLMKNKNGEIIYVGKAKKLKNRVSSYFTGA-HDHKTTRMVRQIDD 63 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 + +T TE E+L+LE N IK ++P++N++ DDKSYP++ + + P + + R K +K Sbjct: 64 FEFIITSTEKESLILEINLIKEHRPQFNIIFMDDKSYPYLKIPREGKPEVLVARDRKQSK 123 Query: 126 G-EYFGPFPNGYAVRETLALLQKIFP----IRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 YFGP+P+ A R+ LL P + ++Y +R +Y Sbjct: 124 QFHYFGPYPDATAARDMARLLNDSVPTGDTLLPNTLAIYSAFNRTGKRY----------- 172 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + EE + V L+G +L +M ASQ+L FE A ++++ A+ + Sbjct: 173 ---TPEELNVWRQNVMSILNGNIKPFKDELERKMLEASQSLNFELAQVYKEKLHALDYIG 229 Query: 241 EKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 +KQ V + + D+ A+ G + LF+R G++L RS + E + +F Sbjct: 230 DKQQVQFSLNERFDLFHFAYYQGYIAIVGLFVRGGRLL-ERSMAVEACM-EEPLDAFVSF 287 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY + + +P I + ++ + L +E V+ RG + L++ + Sbjct: 288 IAQFY----ENQPVPKTIYVPDLVNAEELGDVLGAE-------VKVPLRGKKKTLLEITQ 336 Query: 360 TNAATALTSKLS----QQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVV 414 NA L + S +Q + L L++ L + + R+E FD SH G V++CVV Sbjct: 337 KNAQQQLDDQFSILRERQQFKDEALRDLSAALGMSSIIHRIEVFDNSHISGAFAVSACVV 396 Query: 415 FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLA 473 +D P + +YRRY + DD A+M +VL RRY + + +S +PD+IL+DGGK QL Sbjct: 397 YDDGEPNKNQYRRYKLH--QGNDDVASMKEVLYRRYFRLMRESKPMPDLILVDGGKPQLN 454 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 A V ++L++ + + K + +G ++ S + + + Sbjct: 455 AALEVLSDLEL-----DLRVCSLVKDDRHRTHA---LMREDGTLITINKTSSLFNFLMQM 506 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 +DE H I HR R K S L+ + G+G R++ L K G L+ +R AS+E + V Sbjct: 507 QDEVHRFVITYHRNLRKKAMTRSILDEVSGLGKVRQKELYKKFGSLKNIRAASLETLQTV 566 Query: 594 PGISQGLAEKIFWSLK 609 + + +A ++ L Sbjct: 567 --LPEDVAGDLYDILH 580 >UniRef50_B9LUM9 UvrABC system protein C n=9 Tax=Halobacteriaceae RepID=UVRC_HALLT Length = 592 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 197/629 (31%), Positives = 311/629 (49%), Gaps = 61/629 (9%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 D + + ++PGVY+ AG T +YVGKA +L+ R+ SY ++ S + +V + Sbjct: 2 DADAVRERAADLPTEPGVYQFR-AGETTLYVGKAVNLRNRVRSY--ADPRSGRIRGMVGR 58 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 +I+ VT TET+ALLLE N IK +PRYNV L+DDKSYP + ++ PR+ + R + Sbjct: 59 ADRIEFAVTDTETQALLLEANLIKRLRPRYNVRLKDDKSYPLVAITDHPVPRIEVTRDPE 118 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 +GPF + V + ++ + +R C + Y NR RPCL Y++G C PC G Sbjct: 119 -EGAVAYGPFTSKGRVETVVKAIRDEYRLRGCSDHKYANRDRPCLDYEMGICSAPCT-GE 176 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + E YA+ V R F G+ + L RME A++N EFE AA +RD+++AV + Sbjct: 177 IDPESYAEDVAAARRFFEGETGVLADPLRRRMEAAAENAEFERAANLRDRLEAVEAFHGE 236 Query: 243 --QFVSNTGDDL--DVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKV------------ 286 + VS+ DD DV+ A + A V L +G+++ + Sbjct: 237 GGEAVSDHSDDRTVDVLAAAVEGDTARVARLHSERGQLVDRSRHRLDAAAVGDDGEGDED 296 Query: 287 ----PGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKIN 342 P + V+ F+ Q+Y + R P ILL SD ++ E G ++ Sbjct: 297 GFADPDANTPAAVLSAFLTQYYAE----REFPDAILLAERPSDPDVID--WLEAEG--VS 348 Query: 343 VQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISH 402 V+ G A+ ++LA NA ++ + AL L + R+E FD+SH Sbjct: 349 VRVPGAGREAKLVELALKNAR--------KRGGREDPVGALGERLGIDRPARIEGFDVSH 400 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI---DDSKI 459 G V S V F ++YRR +T DDYA M +++R R +A+ DD Sbjct: 401 AQGTAVVGSDVCFVDGSAETSDYRRKKLT--DRNDDYANMRELVRWRAERAVAGEDDRPD 458 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++LIDGG GQL A++ AE ++ +AK E L P G Sbjct: 459 PDLLLIDGGGGQLGAARDALAETG-----WDVPVVALAK-------AEELVVTPTGT-RR 505 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 P D+P LH++Q +RDE+H A+ H+ R + + L+ + GVGP+ R+ LL+ G + Sbjct: 506 WPDDAPELHLLQRVRDEAHRFAVSYHQTVRDE--VKTVLDDVPGVGPQTRRRLLRRFGSV 563 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + +R+AS++++ V G+ A+ + L Sbjct: 564 ESVRDASLDDLTDVDGVGDATADTLRERL 592 >UniRef50_C0QPW8 Excinuclease ABC subunit C n=5 Tax=Aquificales RepID=C0QPW8_PERMH Length = 580 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 171/608 (28%), Positives = 288/608 (47%), Gaps = 38/608 (6%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + D K + PGVY G IY+GKAK++K RL + K + + Sbjct: 8 DEMEDLKNLIDEAPQSPGVYLFKGKKGEYIYIGKAKNIKNRLKGHLNQYRIDPKEKKIFD 67 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 + +I+ +T ++ EA +LE+ IK Y+P+YNV L+ YP + ++ D +P + + R Sbjct: 68 ESSKIEWIITKSDYEAFVLENELIKQYKPKYNVRLKSGSGYPMLVITDDEYPTVVISRKF 127 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 +GEYFGPF R L+ K+F +R C R C Y +G C PCV Sbjct: 128 GEIEGEYFGPFLPARTARAMKDLIHKLFRLRTC--DPLPKRDIVCFDYHLGLCSAPCV-N 184 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S+++Y V+ + FLSG + + +L R+E L FE+A+ +RDQI A+ + Sbjct: 185 KISKKDYNFDVKAAKAFLSGDVKKFIYRLYDRLEEYKNKLNFEKASVVRDQILAMENLIS 244 Query: 242 KQFVSN-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 KQ V ++ D+ + V+++ +R +++G + G + E+ + + Sbjct: 245 KQEVLGLPVNEADIFYFSGKD----VYLIVVRGSRIVGKE-FIQIKQEGIQDFEI--SVI 297 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 +Y++G +P ++ + SD L LSE G + + + ++ Sbjct: 298 SNYYIRG---NFIPEVVISNRKFSDHKNLKRWLSEKKGSDVRLLFDIPDEIKGFID---R 351 Query: 361 NAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGP 420 N + S L + +R+E FDIS G+ TV S VV++ Sbjct: 352 NIGSVDLSDLKEI---------FKRTFGFDLPERIEGFDISTLFGDFTVGSAVVWENGKM 402 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + EYRR+ I + DDYA++ ++L RR+ K + P ++LIDGGKG L Q + V Sbjct: 403 NKREYRRFKIKTVDGIDDYASLRELLFRRFRKYKEMDNPPRLVLIDGGKGHLKQGEIVRD 462 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L + + + +AK E + + +G+ L P L + IRDE+H Sbjct: 463 ALGIKNLR----IFSLAKK-------EEILYTDDGKSVYLYNYQPLLKLFTTIRDEAHRF 511 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A+ +RK R + L+ IEGVG KR+++L + + + ASVEE+ K+ GI + + Sbjct: 512 ALSYNRKLRERDTLKELLDKIEGVGKKRKEILYRTYKTVDRIAQASVEELKKL-GIPEKV 570 Query: 601 AEKIFWSL 608 A+ I L Sbjct: 571 AQNIKKYL 578 >UniRef50_D1AXF7 Excinuclease ABC, C subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXF7_STRM9 Length = 588 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 176/606 (29%), Positives = 308/606 (50%), Gaps = 32/606 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 +K + + PGVY M D VIYVGKAK+LK R+SSYF + +S KT L+ I+ I+ + Sbjct: 4 IKNIPTNPGVYMMKDINDKVIYVGKAKNLKNRVSSYFNNPKSSMKTFELIKHIKDIEFFL 63 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH----AKG 126 ++E EAL+LE+N IK Y P+YN+LL+D+K+YP++ ++ + P++++ R KH + Sbjct: 64 CNSELEALILENNLIKKYLPKYNILLKDNKTYPYLKITTEKIPQISVVRSRKHLEESTEA 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQY-QIGRCLGPCVEGLVS 184 YFGP+P + ++E + LL F ++ +Y + L+Y + + L E + Sbjct: 124 YYFGPYP--FNMKEMIKLLLSAFDMQYFNIDMYNKKIIGNNLRYNNLNKEL--YFENVED 179 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 E +Y + + + FL KD ++ +L ++M S+NL++E+A +R++I+ + + + Q Sbjct: 180 ENKYIENSKAMINFLKNKDVSIIDKLHNQMIEYSENLDYEKALIMRNRIEKLNALIKTQL 239 Query: 245 VS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + + D DV + + +L IR GK++G + ++ E + Sbjct: 240 IEHSQQVDEDVFVLTNIGNNIFMCILNIRDGKIIGKNNIRIDNKYEE--QDIFEDLFLSY 297 Query: 304 YLQGSQMRTLPGEILLDFNL-SDKTLLADSLSELAGRKINVQTKPRGDRA-RYLKLARTN 361 Y + +P I+++ S+ +L S + + + R L+L + N Sbjct: 298 Y----DNKKIPKNIIIENKYKSNIDILEKYFSTEKNKLVKIHAPIIKSRRLSLLELGKKN 353 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGP 420 L + + + + L L +VL L ++ + +ECFDIS+ G+ V++ V Sbjct: 354 LNYYLDEYMRTEKAISKGLIDLKNVLNLKKLPKIIECFDISNIQGKDAVSAMSVTVNGKA 413 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 YR + IT DD+ M + L RRY K ++ ++PDVILIDGGKGQL A +V Sbjct: 414 DNKRYRHFKITVKDTPDDFMMMRETLMRRYSK-LEIDELPDVILIDGGKGQLGVAVDVLK 472 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 EL ++ +AK E +F E + + AL ++ RDE H Sbjct: 473 ELG---KFEFLDIISIAKKE------ELIFKAEESVPYRFDKNDEALKILIRTRDEVHRF 523 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 I HRK R+K S L+ I G+GPKR++ L+ G ++ + AS +E+ ++ + + Sbjct: 524 GITYHRKLRSKRNIKSVLDEIRGIGPKRKKELILKFGSIKNILEASEKELLEI--LPLNV 581 Query: 601 AEKIFW 606 ++I Sbjct: 582 VKEIKK 587 >UniRef50_B7J223 UvrABC system protein C n=22 Tax=Borrelia RepID=UVRC_BORBZ Length = 603 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 178/607 (29%), Positives = 330/607 (54%), Gaps = 29/607 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + + + + G Y+M + ++Y+GKAK+L+ R+ SYF S K + L+ ++ Sbjct: 7 NLFEKVIKLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEK-NSHKIKILMKNVKS 65 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 I+V T++E EALLLE N IK ++P YNV L+D K YP + ++ + +PR+ R + K Sbjct: 66 IEVITTNSEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRITHEKYPRIFKTRKIINDK 125 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 EYFGPF N + + L + K F IR+C+ + + PCL Y +G+CLG C + + E Sbjct: 126 SEYFGPFTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENL-E 180 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 +EY ++++ + L+G ++ +Q+ +++ A Q +FE A ++++ ++ + + Q V Sbjct: 181 KEYQKELDKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIV 240 Query: 246 SNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + T + ++D + V + + VL R GK++ + F + +E++ F+ Q+Y Sbjct: 241 TKTNNLNIDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKE--NELILQFLIQYY 298 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAT 364 + +P +I + D + ++E+ K + K + + +++A +NA Sbjct: 299 TSINM--IVPDKIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAEL 356 Query: 365 ALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRA 423 +L ++ + L +L VL++ ++ + +E FDI+H G++TVAS V F P + Sbjct: 357 SLREYENKSTK---ALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKE 413 Query: 424 EYRRYNITGITPG--DDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFA 480 YR Y + + G DD+ A+ +V+ RRY + I+++ ++P++ILIDGGKGQL A ++ Sbjct: 414 NYRLYKLNSLLKGEIDDFKAIKEVISRRYSEIINNNLELPNLILIDGGKGQLNAALSILK 473 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 L + +N + +AK ET+F +G +LP PAL ++Q++RDE+H Sbjct: 474 GLKI---ENKVKVCSLAKKQ------ETIFLTTNKKGINLPQGHPALRILQNVRDEAHRK 524 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A G ++K+R K+ I G+G K Q +LK +G + + S EI++ ++ L Sbjct: 525 ANGFNKKRREKITL--LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQL 582 Query: 601 AEKIFWS 607 A++I Sbjct: 583 AKRIKEF 589 >UniRef50_A8F4P7 UvrABC system protein C n=6 Tax=Thermotogaceae RepID=UVRC_THELT Length = 558 Score = 489 bits (1260), Expect = e-137, Method: Composition-based stats. Identities = 186/608 (30%), Positives = 298/608 (49%), Gaps = 54/608 (8%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA--SRKTEALVAQ 62 D K PGVY Y IYVGKAK L+ RL SYF + S+K +A+V + Sbjct: 1 MDLLHKAKLAPLLPGVYIFYGKNKEYIYVGKAKRLRNRLLSYFNRSNGKYSKKIQAIVNE 60 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 +++D V E EALLLE N I ++P+YNV+L+D + YP+I ++ + P + + R + Sbjct: 61 AEELDYIVVSNEREALLLEANLIFNHKPKYNVMLKDAEFYPYIEITKELFPAVQIVR-IR 119 Query: 123 HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL 182 GEYFGP+ + V++ + LQ+++ R C + ++ ++PC+++ + RC PC L Sbjct: 120 STGGEYFGPYTDVKFVKDLIDCLQQVYQFRTCRRDMSKS-TKPCMEFYMHRCAAPCTGDL 178 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 + ++ +R L+G + L + +M+ ++ ++FE AA+ RD + V ++ Sbjct: 179 EPDSYINSSIQPLRRVLNGDISETLDLIEEKMKKHAKMMDFENAAKYRDLLVKFENVMQR 238 Query: 243 Q-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 Q V +LDVIG + VL IR G V+G SY +E F+ Sbjct: 239 QGVVLEQWRNLDVIGRFKN----SYAVLRIRGGHVVGKLSYELDSTK-------LEDFIF 287 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 +Y+ G LP ++L+ N++ +I L AR N Sbjct: 288 HYYMVG--KNELPEAVILERNIN------------FDAEIYFGRPRDKLEEELLHKAREN 333 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGP 420 A ++ L + VL L ++E FD+SH G+ TVAS VVF P Sbjct: 334 AK----NQAYTSGLRKDLLNKMVKVLNLNRYPMKIEGFDVSHLHGKLTVASVVVFFDGLP 389 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 + EYR Y DD+ + ++++RRY K ++PD+I +DGG GQ+ Sbjct: 390 RKNEYRHYRFNS-DRIDDFLTLKELVKRRYSKH----ELPDMIFVDGGTGQINAVVEALM 444 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 E+ D ++G+AK + LP DSP L + IRDE+H Sbjct: 445 EIGKECD-----VVGLAKQNE--------IVCTRFGELILPFDSPILRTLVRIRDEAHRF 491 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL 600 A HRK R K +S L+ I G+GPKR++ L++ G ++ +R+A+++EIA+V G S+ L Sbjct: 492 ANSFHRKLRRKSALSSILDEIPGIGPKRKKKLIEAFGSVKNIRSATLQEIAEVLG-SRKL 550 Query: 601 AEKIFWSL 608 A +I L Sbjct: 551 AAEILSRL 558 >UniRef50_A8ESX8 UvrABC system protein C n=26 Tax=Epsilonproteobacteria RepID=UVRC_ARCB4 Length = 616 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 175/634 (27%), Positives = 311/634 (49%), Gaps = 49/634 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-------SNLASRKTE 57 + + L+ + + GVY+ +D G ++Y+GKAK LK R+ SYF+ ++ S + Sbjct: 1 MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIY 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLA 116 ++++++ + V E +AL+LE++ IK +P+YN+LLRDDK+YP+IF+ + PRL Sbjct: 61 KMISEVESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLD 120 Query: 117 MHRGAKHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCL 175 + R + +K +YFGP+ G R+ L + +I P+ Q ++ V + CL YQI +CL Sbjct: 121 ITRRIQKSKSIKYFGPYSTG--ARDMLDSIYEIVPLVQKKSCV--KGKKACLFYQIQKCL 176 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC E +S+EEYA+ VE ++ K ++++L +M S + FEEA +RD+I+ Sbjct: 177 APC-ENKISKEEYAKIVENALEYIYNKTK-LISKLNEKMLQYSNDFRFEEAMTLRDRIKT 234 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPG-----G 289 + + K + T +D+D+ + + A + +F+R GK+ S F K+ Sbjct: 235 IEKSQIKSDIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFE 294 Query: 290 TELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRG 349 + E E + +Y +++ LP EIL+ L L + L +KI + + Sbjct: 295 FDYQEAYERAIINYYD--NEIPLLPKEILIAHELEITNELEEFLHTRFNKKIKLINPKKD 352 Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQT 408 + + +A N L ++ L + L + +E FD SH MG+ T Sbjct: 353 KKREIVNIALNNCDELL--RIENSKNQTSIYEELKELFNLQTLPYLIESFDNSHMMGQAT 410 Query: 409 VASCVVFDA--NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILID 466 V + +V++ N + +R YN+ D+Y+ M ++L RR + + PD+ +ID Sbjct: 411 VGAMIVWNESLNTFDKKAFRHYNLES---KDEYSQMKEMLIRRIESF-EKNPAPDLWIID 466 Query: 467 GGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGA-----DRKAGLETLFFE-----PEGE 516 GG+ L A ++ + V+ D ++ +AK R G E + Sbjct: 467 GGETLLKLAFDIVQSVGVNLD-----IIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFK 521 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 F+L L +Q RDE+H AI H+K++ SL I+G+G + + LL Y Sbjct: 522 SFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQISLLQIKGIGEAKIKKLLLYF 581 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 G + ++ AS +E+ V +++ A I + Sbjct: 582 GEFEKIKKASFDELKTV--LNEKDASTILDYFTN 613 >UniRef50_Q72IF0 UvrABC system protein C n=5 Tax=Thermaceae RepID=UVRC_THET2 Length = 630 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 203/537 (37%), Positives = 299/537 (55%), Gaps = 25/537 (4%) Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D T E EALLLE N IK ++P YNVLL+DDK YPF+ L+ + P L + R + Sbjct: 97 LDFIATRDEVEALLLEANLIKAHRPLYNVLLKDDKHYPFLKLTNEPFPTLLVVRRVEEDG 156 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 +Y+GPFP A+R L+ ++FP+R+ + R PCL Y +GRCL PCV G Sbjct: 157 AKYYGPFPEAGALRRIKTLIDRLFPLRKNSGYPMKRRRYPCLNYSMGRCLAPCV-GKADP 215 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE--KQ 243 E Y + V V L G+ D +L +L ++M A++ LEFE AA IRDQ++A+R +Q Sbjct: 216 EAYQEVVRQVEAVLEGRVDGLLQELEAKMREAARRLEFERAAEIRDQMEALRAFFSTDQQ 275 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 DLD +G+A +A V + +R G++LG S + E++ F+ Sbjct: 276 AFDPEMGDLDFLGMARSGALAVVQLYQVRSGRILGRISRVVEK-EEATDEEILWAFLRDH 334 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 YL+ S + +LL F L D LA+ L AGRK+ ++ +G++AR L+LA NA Sbjct: 335 YLEASPLPP---LVLLPFPLEDLESLAELLKRRAGRKVELRVPKKGEKARLLELAERNAR 391 Query: 364 TALTSKLSQQSTV--HQRLTALASVLKLP-EVKRMECFDISHTMGEQTVASCVVFDANGP 420 AL ++L + H L AL +L LP R+E +DISH G+ V S VF+ P Sbjct: 392 LALETELKLRERRGEHPALKALQDLLGLPARPWRLEGYDISHLQGQARVFSIAVFEGGRP 451 Query: 421 LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA 480 R EYRR + DDYAAM + + RRY ++ D +PD++LIDGG GQ+ A Sbjct: 452 KRQEYRRMRLK--AGNDDYAAMEEGVFRRYTGSLKDLPLPDLLLIDGGVGQVRAAARALE 509 Query: 481 ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH 540 + + L+G+AKG E + PEG LP PAL ++ H+RDE+H + Sbjct: 510 KAGL-----RLPLVGLAKG-------EEVLVTPEGRELRLPLTHPALQLLIHLRDEAHQN 557 Query: 541 AIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 + HRK+R++ L+ I G+G KRR++LL+ GGL+ L+ A +EE+A++PG+S Sbjct: 558 GLRYHRKRRSEELFR-VLQGIPGIGEKRRRLLLERYGGLRALKEAPLEELARLPGMS 613 >UniRef50_B1AJ20 UvrABC system protein C n=15 Tax=Ureaplasma RepID=UVRC_UREP2 Length = 584 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 163/598 (27%), Positives = 276/598 (46%), Gaps = 37/598 (6%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+D K LK + +PG Y D +IY+GKAKDL R SYF KT LV Sbjct: 1 MNDL--LKNKLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLV 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 I ++ V + EAL+LE+N IK + P+YN+LL+D +YP+I ++ + +PRL R Sbjct: 58 NNINDLEYIVVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITNEQYPRLKYVRT 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 KG YFGP + + LL IFP +C + Y+ C+ Y + +C+ Sbjct: 118 YDKNKGIYFGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQCI----- 168 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V + Y + + V+ G D +L L ++ + A L+FE A + +Q +A+ + Sbjct: 169 NQVQQSTYQEAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSII 228 Query: 241 EKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 V + + D+IG + + +GK+L + E++E++ +F Sbjct: 229 NSGLVQLDNNESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTF-AIYDYEINELITSF 287 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + Q+Y Q + +I++ + + L+ R LKLA Sbjct: 288 LMQYYSQ----NKISSKIIVSLDDDNLLALSQRFHTK------FINAQTKFHKRILKLAL 337 Query: 360 TNAATALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA S + +Q+ + L L +LKLP++ +ECFD S+ +A +V+ Sbjct: 338 DNAILYFESNIKNVINKQNELDDALNQLKQILKLPDLNIIECFDNSNINLSLPIAGMIVY 397 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD-SKIPDVILIDGGKGQLAQ 474 R+YN+ DY M +V+ RRY + + K+P++I++DGGK Q+ Sbjct: 398 QNGKLNNKLNRKYNLMTTKNASDYHFMIEVITRRYQRLVSQHQKLPNLIVVDGGKLQVNA 457 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 A A+L ++ L+G+ K K G+ L S + +++ Sbjct: 458 ALYALAQLQIN-----IPLIGLKKDQKHKTDA---IVLTNGDEIVLDRKSILYKFLANMQ 509 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK 592 ++ H++AI R K K S L+ ++G+G KR LLKY + L++AS +E+ + Sbjct: 510 NDVHNYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQ 567 >UniRef50_A9A4M1 Excinuclease ABC, C subunit n=2 Tax=Thaumarchaeota RepID=A9A4M1_NITMS Length = 528 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 165/549 (30%), Positives = 269/549 (48%), Gaps = 40/549 (7%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 T+ + PG+Y M D+ GT+IY+GKAK+LKKR+ SYF N + KT+ LV I I+ +T Sbjct: 9 TIPTDPGIYLMKDSDGTIIYIGKAKNLKKRVKSYFLKNQ-NYKTQKLVQNISDIEFVLTD 67 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK----GEY 128 E+EA LLE N IK Y+PR+N+ L+D + Y ++ +S + +PRL + R + K G+ Sbjct: 68 NESEAFLLESNMIKKYRPRFNIELKDQQRYTYLRISDEKYPRLLVARRTRDGKFLGKGKT 127 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF G + T+ L+K F IR C+ + CL+Y +G C GPC +++ Y Sbjct: 128 FGPFTQGSSKLLTIGALRKAFQIRICKTL----PKKVCLEYHLGNCEGPCEFND-AQDRY 182 Query: 189 AQQVEYVRLFLSGKD--DQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 + V + L GK+ +L M A++ +FE A IRD + + + KQ + Sbjct: 183 PKHVAALEEVLKGKNQTKIFTKKLEEEMHQAAELQQFERAKDIRDTLIRLGSLQTKQKME 242 Query: 247 N-TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 D + G+ A V + G + S +F + G F+ Q+Y Sbjct: 243 YVENSDEEYFGIGIQEQSATVMNFRMINGVIRDSDKFFFDLVGDNS----FSNFLYQYYS 298 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 +P I++ ++ LL LSE AG + + T +G + + L N Sbjct: 299 TH----KIPKYIIVSELPENQKLLESLLSEQAGFSVKISTPTKGKKKDIMNLILKNI--- 351 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAE 424 KL L L +L LP + +ECFDIS+ + V S F P ++ Sbjct: 352 ---KLIHSKGGEPGLVELKDILHLPVIPNVIECFDISNHGEDFAVGSMAQFVNGKPNKSG 408 Query: 425 YRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELD 483 YR++ I ++ DD+A + +V++RRY + ++++ ++PD+I+IDGGKGQL A L Sbjct: 409 YRKFKIKTVSGRDDFAMIGEVIKRRYYRLLEENSELPDLIVIDGGKGQLNAATKSLQSLG 468 Query: 484 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 543 + + +AK E ++ ++ + P+L ++QH RDE+H + Sbjct: 469 LK-----LPCISLAKEN------EEIYLPKTKNPVTIAKNKPSLQILQHARDETHRFGVA 517 Query: 544 GHRKKRAKV 552 +R R Sbjct: 518 YNRTIRKNQ 526 >UniRef50_UPI0001977D11 excinuclease ABC subunit C n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001977D11 Length = 627 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 176/610 (28%), Positives = 301/610 (49%), Gaps = 45/610 (7%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--------SNLASRKTEALVAQ 62 L+ + +QPG+Y+ +D ++YVGKAK+LK R+ SYF S++ +V+Q Sbjct: 22 LQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQRIALMVSQ 81 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGA 121 + +I +T ++ +AL+LE++ IK +P+YN+LLRDDK+YP+I++ + T PR + R A Sbjct: 82 VAKIHTLLTQSQEDALILENSLIKSLKPKYNILLRDDKTYPYIYIDTSATFPRFEITRKA 141 Query: 122 KHAKG-EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 +K EYFGPF +G RE L L P+ Q ++ + + C+ +QI +C PC E Sbjct: 142 LQSKHIEYFGPFVSG--ARELLDSLYDALPLVQKKSCL--KGKKACIFHQIHKCPAPC-E 196 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 +S+ +YA+ + + F+ ++ L S+M+ S NL+FEEAA+IRD+IQ ++ + Sbjct: 197 NKISQSQYAEYITQAKAFID-DRKGLIEILESKMQILSHNLQFEEAAKIRDRIQKLKTLK 255 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSR-SYFPKVPGGTELSEVVETF 299 + + D D+ + + +LFIR G+++ S S+ + L+++ Sbjct: 256 TQSIIDIMSGDYDIFLLDSAGQNHILMMLFIRNGRIVSSDFSFIHQEIHSQNLAQLYTQA 315 Query: 300 VGQFYLQGSQMRTLPGEILLDF----NLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + Y + + P EIL+ + +K L L + + +G + L Sbjct: 316 LLNHY--KTPLPLPPKEILIPHFDFQDKDEKDDLQKILQAQTQSHLKITQPQKGTKYNLL 373 Query: 356 KLARTNAATALTSKLSQQSTVHQ---RLTALASVLKLPEVK-RMECFDISHTMGEQTVAS 411 +LA+ NA LT +Q L AL + L +V R+E FD SH G V Sbjct: 374 QLAKKNAQEILTLHTKEQKNAQNENTTLYALKDLCNLSQVPYRIEIFDTSHHSGSHNVGG 433 Query: 412 CVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQ 471 VV++ +R+ YRR+ + D+Y+ M+++L RR K + + PD+ L+DGGK Q Sbjct: 434 MVVYENGEFIRSAYRRFELHS---SDEYSQMSEMLTRRAKKF-ESNPPPDLWLLDGGKAQ 489 Query: 472 LAQAKNVFAELDVSWDKNHPLLLGVAK-----GADRKAGLETLFFEPEGEGFSLPPDSPA 526 + A ++ + + ++ +AK A R G + F L + Sbjct: 490 INLALDILKSVGAN-----VDIIAIAKMKYNAKAYRAKGNALDILRTQNAEFKLSTNDKR 544 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGV----GPKRRQMLLKYMGGLQGL 582 L Q +RDE H +AI HR K+ K + ++ + + + LL Y G Sbjct: 545 LQFCQKLRDEVHRYAITYHRNKKQKDIHKIQIQKGSDMDSSYSKAQIKQLLDYFGSFHAF 604 Query: 583 RNASVEEIAK 592 +NA E+I Sbjct: 605 QNAPKEQIEN 614 >UniRef50_Q7NBC4 UvrABC system protein C n=1 Tax=Mycoplasma gallisepticum RepID=UVRC_MYCGA Length = 592 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 167/615 (27%), Positives = 300/615 (48%), Gaps = 35/615 (5%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F+ K L +PG Y + +IY+GKAK++ KR+ YF KT LV +I Sbjct: 3 FNLKQKLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIF 61 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 ++ + E EALLLE N IK ++PRYN+LL+D+ YP+I ++ + +PRL R Sbjct: 62 YVEFIEVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILMTKEKYPRLIYTRNFDPK 121 Query: 125 KGEYFGPFPNGYA-VRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 KG+++GPF + + LL K+FP++ C + + R C Y + C+ C V Sbjct: 122 KGKHYGPFASSEMKAYDLYNLLLKLFPLKNC----FNKKGRKCEFYDLNLCMKACTH-EV 176 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 SE +Y + + F DQVL L + AS+ +FE+A + D +A+ + +KQ Sbjct: 177 SEADYEVMKKKIDYFFHNGADQVLKDLKEKESIASEKFDFEQAKKYLDLQKAINLIFDKQ 236 Query: 244 FVS--NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 ++ + + +DV+ + C+ + +++ S++ G E EV+ +++ Sbjct: 237 IINLYSAKERIDVLAYQIKENVICIVLFSYVSSQLV-SKNTICDFYYGEE-QEVITSYLS 294 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Q+Y + P + + ++ TLL DSL I + G + LA N Sbjct: 295 QYYKDNIK----PKILYASLDQANATLLKDSLG------IEIINPTSGKMNEIMSLALQN 344 Query: 362 AATALTSKL----SQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 L+ K ++ ++ L L ++K+ ++ +E +D S+ V++ +VF+ Sbjct: 345 VTNELSQKYDSLVKKEQRINLALDQLKKLIKVDKLNHLEVYDNSNLFNTDKVSAMIVFEN 404 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS--KIPDVILIDGGKGQLAQA 475 N + +YR+Y I DY M +V+ RR +A+ ++ +PD+I++DGGK Q+ A Sbjct: 405 NQFNKKKYRKYKIKDQQALGDYHYMYEVIYRRLYQALKNNFVDLPDLIILDGGKHQVLAA 464 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 K +L + L+G+AK + + + SL S + ++++ Sbjct: 465 KKAIVDLQID---KKINLIGLAKNNKHQTDK---IVTFDLDEISLDKSSALYFFLANLQE 518 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E H AI RK +AK S L+ I+G+G KR+Q L+++ + ++ AS+ +++V Sbjct: 519 EVHKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQVLP 578 Query: 596 ISQGLAEKIFWSLKH 610 I +A+K+ L Sbjct: 579 I--EIAKKLKQKLDQ 591 >UniRef50_C2KQB5 Excinuclease ABC subunit C n=2 Tax=Mobiluncus mulieris RepID=C2KQB5_9ACTO Length = 702 Score = 470 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 160/500 (32%), Positives = 252/500 (50%), Gaps = 41/500 (8%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 + + PGVYR DA G VIYVGKAK+L+ RL+SYF +T +VA + + Sbjct: 7 PKPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVS 66 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V +E EAL LE+ +IK Y P++NV+ +DDKSYP+ ++ PR+ + R A Sbjct: 67 WVVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGV 126 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP---CLQYQIGRCLGPCVEGLV 183 YFGP+ +A+R+T LL+ +FP+R C + V+ CL+ IGRC PC+ G + Sbjct: 127 RYFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCI-GRI 185 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 S E+ + V F+SG + +L L ++M S+ FEEAA+ RDQ++A+R+V EK Sbjct: 186 SAAEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKN 245 Query: 244 FVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 V +T D D+ +A D V V ++R G++ G R + + + SE++ + Q Sbjct: 246 AVVMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSFALEQ 305 Query: 303 FYLQGS-----------------------QMRTLPGEILLDFNLSDKTLLADSLSELAGR 339 Y Q + +P +IL+ +D L LS L G Sbjct: 306 IYGQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGS 365 Query: 340 KINVQTKPRGDRARYLKLARTNAATALTSKLSQQST----VHQRLTALASVLKLPEVKRM 395 K+ ++ RG + ++ NA L +++++ + L L L + R+ Sbjct: 366 KVTIRRPQRGMKREAVERVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPLRV 425 Query: 396 ECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGK 452 EC+DISHT G V S VVF+ P + YR++ + G DD AMN+VLRRR+ + Sbjct: 426 ECYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFER 485 Query: 453 A-IDDSKIPDVI---LIDGG 468 +++ P + + D G Sbjct: 486 LIQEETPAPHEVEPAVTDRG 505 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 16/163 (9%) Query: 448 RRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLE 507 +R+ PD++++DG Q+ A+ V ++G+AK LE Sbjct: 549 KRFSYR------PDLVVVDGALPQVHAARAAMDAAGV----WDIPVVGLAK------RLE 592 Query: 508 TLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPK 567 ++ P S AL+++Q++RDESH AI HRKKR + S L+ I G+G Sbjct: 593 EVWTVDSDFPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSV 652 Query: 568 RRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 +++ LLK+ G L+ +R AS E+I+KVPG + LA ++ L+ Sbjct: 653 KQKALLKHFGSLRQIRRASAEDISKVPGFGRILATQVVKYLQE 695 >UniRef50_Q2SSM4 UvrABC system protein C n=5 Tax=Mollicutes RepID=UVRC_MYCCT Length = 584 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 177/614 (28%), Positives = 296/614 (48%), Gaps = 40/614 (6%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + K + +T++PG Y + VIYVGKAK+LKKR+S+YF + KT L+ +I Sbjct: 1 MNLKEQVDLLTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYFNKAY-NIKTTRLIREIT 59 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 + + E E+LLLE N IK Y+P+YNVLL DDK+YP+I ++ P R + Sbjct: 60 HLKYFIVDNEKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIIITNQKDPMYKYVRKYEKK 119 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 +GP P G R L LQ++FP+R C+ + +PCL Y + +C G C + V Sbjct: 120 ALRNYGPLPIGSNARSILLTLQRLFPLRMCKGDL----KKPCLYYHLNQCSGACFK-TVD 174 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 Y Q++ V F G+ +QV L+ +M+ AS NL+FE+A RI+DQI ++ +T KQ Sbjct: 175 SSYYEYQIKQVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQITSLDFITAKQN 234 Query: 245 VS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V T ++DV+ + C +LF R G++ Y + G +L E++ +++ Q Sbjct: 235 VDIVTNKNIDVVNYEINEEKICFVMLFYRLGQLTYKDEY-IQNYEGQDLDELLNSYLQQI 293 Query: 304 YLQG--SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN 361 Y + + +P EI L + + +KLA+ N Sbjct: 294 YQKNLYPDVLLIPNEIDLLDLDENLLEFSSYSFNNQDDIF-------------IKLAKQN 340 Query: 362 AATALTSKLSQ----QSTVHQRLTALASVLKL-PEVKRMECFDISHTMGEQTVASCVVFD 416 A +L + + L L + + KR+E FDIS+ + +C+V+ Sbjct: 341 AVDSLNKSILSNNVNSGDELEILDQLQQISNINKYPKRIEIFDISNIYNQFITGACIVYI 400 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY-GKAIDDSKIPDVILIDGGKGQLAQA 475 P+R E+R+YNI DYA M +L +R+ + + ++PD+I++DGG Q+ A Sbjct: 401 NAKPVRNEFRKYNI-DSQYTSDYARMKFMLEKRFLKRIKEKEQLPDLIIVDGGIIQIHAA 459 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535 K V +L++ ++G++K + K F + + + + ++ Sbjct: 460 KEVLNKLNLK-----INVIGLSKDNNHKTRYLIDIF---EQTIDIKNFKKLYNFLTSLQI 511 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 ++A G RKK N L I+GVG K L K+ + ++NAS +E+ K+ Sbjct: 512 RVDEYAKSGFRKKYHNQLNDQILL-IKGVGKKTNLKLYKHFKTIDNIKNASFDELNKIIN 570 Query: 596 ISQGLAEKIFWSLK 609 ++ + I + K Sbjct: 571 -NKKITNLIISNFK 583 >UniRef50_B5Y9S9 Excinuclease ABC, C subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9S9_COPPD Length = 595 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 174/620 (28%), Positives = 286/620 (46%), Gaps = 45/620 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 + ++ PGVY Y G VIYVGKA DL RL+ Y R + +K +++ Sbjct: 1 MTLRESIEQAPHSPGVYLFYGNSGQVIYVGKASDLHNRLADYAR-SQPGQKEHLIMSNAS 59 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR---G 120 ++ + E ++L LE IK Y P YNVLL+D K Y ++ + +P + + R Sbjct: 60 KVSWIIVANERQSLELEETLIKKYAPPYNVLLKDGKGYSYLRIDLSQEYPAVEIVRIKQR 119 Query: 121 AKHAKGEYFGPFPN----------GYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQ 170 FGPF ++ + + +++F IR C+ + + R RPC+ Y+ Sbjct: 120 KPKPGQLLFGPFVPLRVPDMPGKVRGDLKNLIQIAEEVFGIRSCKGPL-KRRMRPCVYYE 178 Query: 171 IGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIR 230 IGRC GPC+ G +S EEY +V+ FL G +V +L M+ ++NL FE AA +R Sbjct: 179 IGRCSGPCI-GKISPEEYKDRVQLFIKFLKGDTKEVENRLTKMMKEEAENLNFERAAELR 237 Query: 231 DQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT 290 D + V+R+ Q +N D+I A A V+ +R G + Sbjct: 238 DLLYTVKRI-GMQREANVDGSADLIAFALKEDQASGFVVSVRDGMITNVFGLKYSSGATI 296 Query: 291 ELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGD 350 E SEV+E+F + + L ++ +++ L L G ++ Sbjct: 297 EPSEVMESFFRDYVRLYHEQGVLA---YVNGAVAET---LKPLGSLHGVQVE---AVPDH 347 Query: 351 RARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTV 409 L++A NA + L + + L + VL+L + R+E FD++ G + V Sbjct: 348 WKALLRVAEENAESILERDEG-TERIKRGLLRIKEVLRLEHIPTRIEGFDMAQLFGSERV 406 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGK 469 V + YR Y I G + DD++ M +VL RR + + +PD++LIDGG+ Sbjct: 407 GGKVAYVNGQFYTPWYRHYRIKG-SYKDDFSFMYEVLIRRLQ--DEKTGLPDLMLIDGGR 463 Query: 470 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 529 LA + +L V+ + +AK DR LF + + LPP+ V Sbjct: 464 QHLAVVEKAMEQLGVT-----VPAVAIAKPDDR------LFVSWKEDPIYLPPEDVGKQV 512 Query: 530 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 589 +Q IR+E+H HRK R L + G+G RR+ L++ GG+ GL+ AS+EE Sbjct: 513 LQTIRNEAHRWVNSYHRKLRED--FGDILLGVPGIGKARRRKLIETFGGMVGLQAASIEE 570 Query: 590 IAKVPGISQGLAEKIFWSLK 609 + G+ +A++++ +L Sbjct: 571 LTVKGGLPPKVAQQLYRALH 590 >UniRef50_B9KC51 UvrABC system protein C n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC51_THENN Length = 503 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 175/551 (31%), Positives = 284/551 (51%), Gaps = 50/551 (9%) Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 + + ++ V TE EALLLE N I+ Y+P+YNV L+D + YP+I +S D P + + + Sbjct: 1 MEEADDLETIVVTTEKEALLLEANLIRKYRPKYNVRLKDTEFYPYIRISNDDIPYVEIVK 60 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 G YFGP+ VR+ L LQ+I R C+ + R + RPC + + RC+GPC Sbjct: 61 RRLKD-GTYFGPYTTVRFVRDLLETLQRILGFRTCKFDLNRVK-RPCFLFHLKRCVGPCA 118 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 + +++ + +E +R FLSG V L +ME S+ L+FE AA+ RD + + V Sbjct: 119 GNV---DQHEEAIEKLRDFLSGNMRDVFDYLRRKMELHSRMLDFENAAKYRDLLLNLSSV 175 Query: 240 TEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET 298 E Q V+ + DV+ A VL +R G ++G S+ + ++ Sbjct: 176 LESQGVAFEEKINCDVVVHAQ----GLFVVLRVRDGYLIGKISFEMEGGN-------LDD 224 Query: 299 FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLA 358 F+ ++Y+ G +P ++++ +L + + V L+ A Sbjct: 225 FIREYYVSG--RGDVPNSLVVESDLEEMDYTSLGFQ-------YVGKPRSQLEKDLLEKA 275 Query: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPE-VKRMECFDISHTMGEQTVASCVVFDA 417 R N T L+ + ++ L L +L L E V R+E D+SH G+ TVAS VVF+ Sbjct: 276 RKNLETELSMRGLKKE----ALKELMKLLNLKEFVYRIEGIDVSHLQGKHTVASLVVFED 331 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKN 477 P ++EYRRY + + DDY A+ +V+RRRY K +P+++ +DGG+GQ+ A Sbjct: 332 GLPKKSEYRRYRLN-LERPDDYEAIREVVRRRYSKH----PLPNLLFVDGGRGQVNAALE 386 Query: 478 VFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDES 537 +L + ++G+AK E + + + LP D P L ++ +RDE+ Sbjct: 387 ALKDLGKAC-----PVVGLAKK-------EEIIVTEDKD-IVLPQDHPVLRLLIQVRDET 433 Query: 538 HDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGIS 597 H A+ HR++R K S L+ I GVGP R++ LL++ G ++ +R+ASVEEIA+V G S Sbjct: 434 HRFAVNYHRRRREKESLRSVLDEIPGVGPIRKKKLLEHFGSIESIRSASVEEIARVIG-S 492 Query: 598 QGLAEKIFWSL 608 +A +I L Sbjct: 493 AEVARRILERL 503 >UniRef50_A9EYQ9 Excinuclease ABC, subunit C n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EYQ9_SORC5 Length = 742 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 167/457 (36%), Positives = 241/457 (52%), Gaps = 9/457 (1%) Query: 15 TSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK--TEALVAQIQQIDVTVTH 72 + PG Y D G V+YVGKAK L+ R+ SYF+ + + + L + ++ VT Sbjct: 22 PTTPGCYLFIDKAGAVVYVGKAKSLRSRVRSYFQESGSDARYFIPILRKIVADLETVVTA 81 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGEYFGP 131 TE EA +LE+ +K ++PR+NV LRDDK + + L + P L R K YFGP Sbjct: 82 TEKEAAVLENELVKQHKPRFNVKLRDDKDFLCLKLDTQKAWPMLETVRRPAPDKARYFGP 141 Query: 132 FPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQ 191 + + + R TL L+ K F +R C ++ +R RPCLQYQI RCL PCV V E Y + Sbjct: 142 YHSATSARRTLHLVNKHFQLRTCSDTEMASRRRPCLQYQIKRCLAPCVM-DVDRELYTEM 200 Query: 192 VEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGD- 250 V V LFL G+ D++ +L +RM AS+ LEFE AA RDQ++AV V E Q V D Sbjct: 201 VRSVALFLEGRHDELTGELTTRMRDASRELEFERAAIYRDQLRAVEAVREAQRVVYVKDV 260 Query: 251 DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQM 310 D DV+G+ + + V V+ +R+G+V + S+ + EV+ F+ ++Y G Sbjct: 261 DQDVVGIYREGTLVEVEVILVRRGRVTDTLSFSLRN-MELPDDEVLGGFLNEYY--GVAS 317 Query: 311 RTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKL 370 T+P E+L+ +A+ L + GRK+ + RG R LK+A NAA A K Sbjct: 318 TTIPDEVLVPVLPDGAEGVAEWLGDRRGRKVALFVPQRGPRVDLLKMANENAAHAFREKQ 377 Query: 371 SQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYN 429 + RL + L+LP + R +EC DISH G TV S V P + YR +N Sbjct: 378 RSSDDLEARLEEIRERLRLPTLPRRIECCDISHLGGGDTVGSIVALLDGQPDKKRYRSFN 437 Query: 430 ITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILID 466 + + GDDYAAM +VL RR+ + + D Sbjct: 438 VKSVADGDDYAAMYEVLSRRFRRGKAARQASPASTAD 474 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 446 LRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 + RR + +PD+ ++DGG+GQL A + +L + ++G+AK + + G Sbjct: 555 VSRRAEAGGGEWDLPDLFVVDGGRGQLQVALSAARDLGLHG----LPIVGLAKERETQTG 610 Query: 506 L---ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIE 562 + ++ + G L S AL + RDE+H A ++ + S +E I Sbjct: 611 EKLVDRVYLPGQKNGIPLRSTSSALFFLARARDEAHRFANHARKRLGKARRLRSEIEDIP 670 Query: 563 GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 G+G R LL+ +G ++G+R A+ +I V G+++ Sbjct: 671 GLGSAVRTALLRELGSMEGVRRATDAQILGVTGVTKR 707 >UniRef50_Q2NJ78 UvrABC system protein C n=3 Tax=Candidatus Phytoplasma RepID=UVRC_AYWBP Length = 589 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 182/614 (29%), Positives = 310/614 (50%), Gaps = 40/614 (6%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 +KT+ PG Y + T+IYVGKAK+LKKR+ SYF + KT L+ + Q Sbjct: 4 LLEKIKTLPPNPGCYLFKNTKDTIIYVGKAKNLKKRVQSYFTK-RNNLKTAMLIEETQDF 62 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 +T+ E EAL+LE N IK + P+YN L DDK+YP+I ++ + HP+L + R + G Sbjct: 63 FYIITNNEQEALILEANLIKTHTPKYNFKLLDDKTYPYIEITKEKHPQLKISRFKQIPPG 122 Query: 127 E-YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 + FGP+PN + +ETL LL ++P+R+C+ + +PCL + I +CLG C + Sbjct: 123 KIIFGPYPNLKSTKETLKLLHLLYPLRRCQLA----SKKPCLHFHINQCLGACAGKTI-- 176 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y ++ + FL G +L +L M+ AS+ + +E+A RD I ++++ T+KQ + Sbjct: 177 -NYKPNIDAITKFLKGNIKDILKKLHHLMQKASEKMFYEKAQEYRDIIDSIKQTTKKQLI 235 Query: 246 SNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 SN + D+ AF+ + +L IRQG ++ S G + E + T++ +Y Sbjct: 236 SNQKLKNCDIFAYAFNQDQIAIQILKIRQGNIVDSYRSVFSYVGF--VCENILTYLNCYY 293 Query: 305 LQGSQMRTL-----PGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + + + E +L ++++TLL L K+N+ K GD+ + LA Sbjct: 294 QKNIKPDIIITGKNQDENILQQTITNQTLLEQILQT----KVNIYHK--GDKKKLFLLAL 347 Query: 360 TNAATALTS----KLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVF 415 NA L+ S+ + + L LA + ++KR++ FD S G+ VA+ +VF Sbjct: 348 KNAQNDLSHNNLIYQSKDQKIQEALNKLAIIFN-KDIKRIDVFDNSQLFGKAFVAARIVF 406 Query: 416 DANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQ 474 + + YR ++I G ++Y A + L R Y K + ++ D+IL+DG QL Q Sbjct: 407 NHFEFDKKLYRTFHIKG-ELPNEYQAFEETLTRCYNKGKEAENDATDLILVDGSLVQLRQ 465 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 ++ +L L + K + F E L D H ++ + Sbjct: 466 SQKTLKKLGY-----EIPLGALQKNNKHQLTHLVTF----QEKLMLEQDPNLFHFLKSLS 516 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 +E H A+ HRK + K+ ++L I+GVG R++ +L + L+ ++ A++++ K+ Sbjct: 517 EEVHRFAVSFHRKTKKKLDYKTTLSNIKGVGVVRKKAILNHFESLEAIKKATLQDFQKI- 575 Query: 595 GISQGLAEKIFWSL 608 GI+Q L I SL Sbjct: 576 GINQKLFLLIKKSL 589 >UniRef50_Q7VK73 UvrABC system protein C n=2 Tax=Helicobacter RepID=UVRC_HELHP Length = 621 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 179/626 (28%), Positives = 295/626 (47%), Gaps = 53/626 (8%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR--------SNLAS 53 S ++ L + +Q G+Y+ +D T++YVGKAK+LK R+ SY N S Sbjct: 6 STSYNLLVHLADLPTQSGIYQFFDNEDTLLYVGKAKNLKNRIKSYLSIENKHIVPKNNLS 65 Query: 54 RKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-TH 112 + +V+QI +I +T+ E +AL+LE++ IK +P+YN+LLRDDK+YP+I++ + Sbjct: 66 PRIALMVSQITRIHTLLTNNEQDALILENSLIKSLKPKYNILLRDDKTYPYIYIDKSLPY 125 Query: 113 PRLAMHRGAKHAKGE-YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQI 171 PR + R + YFGPF +G RE L L P+ Q ++ V + C+ +QI Sbjct: 126 PRFELTRQVLKSNQIQYFGPFVSG--ARELLDSLYDNLPLVQKKSCV--KGKKACIFHQI 181 Query: 172 GRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRD 231 +C PC E VS + YAQ + + +L L S+M T S NL+FEEAA +RD Sbjct: 182 HKCPAPC-ENKVSIQTYAQTIAQGIALIE-DKKALLKILESKMHTLSHNLQFEEAAIMRD 239 Query: 232 QIQAVRRVTEKQFVSNTGDDLDVIGVAFDA----------------GMACVHVLFIRQGK 275 +IQ + ++ + + D DV + + +LFIR G+ Sbjct: 240 RIQKITQMKNQSIIDMMSGDYDVFVLQEQDCGKNSQDSHKKSHTALHTHILMMLFIRNGR 299 Query: 276 VLGSRSYFP-KVPGGTELSEVVETFVGQFYLQGSQMRTLPGEI-LLDFNLSDKTLLADSL 333 ++ S L ++ + Y +Q+ LP EI + F+ D L L Sbjct: 300 IISSDFILLHDDIQSHNLPQLYTQALLNHY--KTQIPLLPQEILIPPFDFPDLLHLQQLL 357 Query: 334 SELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK 393 E + + RG + L+LA NA + +QQ+ L ++ + L ++ Sbjct: 358 REQTRSSLKIVQPQRGAKKDLLQLAHKNALE-IRRLHTQQNNTFSTLVSIKELCVLSQIP 416 Query: 394 -RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGK 452 +E FD SH G V +V++ + +R++YRRY + D+Y+ M+++L RR Sbjct: 417 YSIEVFDTSHHSGTHNVGGMIVYENDDFIRSKYRRYELHT---SDEYSQMHEMLLRRAQS 473 Query: 453 AIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK-----GADRKAGLE 507 D + P + L+DGG+ Q+ A ++ + + +L +AK A R G Sbjct: 474 F-DSNPPPALWLLDGGRAQINLALDILKSVGAN-----VEVLAIAKMKHNAKAYRAKGNA 527 Query: 508 TLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPK 567 + F L P+ L +Q +RDE H +AI HR K+ K + + + Sbjct: 528 FDILRSKNAEFKLKPNDKRLQFLQKLRDEVHRYAITYHRYKKQKDIQKAQMMG-KNYTQA 586 Query: 568 RRQMLLKYMGGLQGLRNASVEEIAKV 593 + + LL Y G + L+ AS E+I V Sbjct: 587 QIKKLLDYFGSFESLKTASQEQINSV 612 >UniRef50_D2LI59 Excinuclease ABC, C subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LI59_RHOVA Length = 689 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 175/464 (37%), Positives = 272/464 (58%), Gaps = 10/464 (2%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 + ++K + + PGVYRM D G VIYVGKA++LK R+ +Y R + + A++ Sbjct: 25 TGPQVIHRYVKHLGTGPGVYRMVDLAGEVIYVGKARNLKNRVQNYTRMGGHTNRIAAMIR 84 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRG 120 ++ T TE EALLLE N IK ++PRYNV RDDKS+P+I + D ++A HRG Sbjct: 85 ATATMEFVNTRTEAEALLLEANLIKRFKPRYNVSFRDDKSFPYIVIRRDQEAAQIAKHRG 144 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 A+ KG+YFGPF + AV T+ LQ+ F +R C +SVY +R+RPCL +QI RC GPC Sbjct: 145 ARTVKGDYFGPFASAGAVNRTINTLQRAFLLRTCADSVYDSRTRPCLLFQIKRCAGPCTR 204 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + ++Y++ V+ FLSGK D V +L + ME A++ LEFE AA+ R+++ A+ V Sbjct: 205 -EIPLDDYSKLVDEATAFLSGKTDAVQRKLNTLMEEAAEALEFERAAKYRNRLWALAHVQ 263 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 Q ++ G ++ DV +A G C+ V F R G+ G+R+YFP+ +EV+ +F Sbjct: 264 AHQGINPKGVEEADVFAIAQQGGQTCIEVFFFRSGQNWGNRAYFPRADKSLSPAEVLGSF 323 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY + +P + L + +++L++++LS GRK++V T RG++ + A Sbjct: 324 ISQFYDD----KLVPRCVFLSEEVPEQSLISEALSTKLGRKVDVVTPRRGEKRELVDYAH 379 Query: 360 TNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDAN 418 NA AL KL++ ++ + L +A V L V R+E +D SH MG V +V Sbjct: 380 QNAREALGRKLAETTSNARLLAGVAQVFGLERVPRRIEVYDNSHIMGTNAVGGMIVAGPE 439 Query: 419 GPLRAEYRRYNITG--ITPGDDYAAMNQVLRRRYGKAIDDSKIP 460 G + YR++NI +TPGDD+ M +VL RR+ + + + +P Sbjct: 440 GFAKNHYRKFNIRTADLTPGDDFGMMREVLTRRFKRLLKEHGLP 483 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 89/151 (58%), Gaps = 5/151 (3%) Query: 457 SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGE 516 PD++LIDGG GQL+ A+ V AEL + + G+AKG DR AG E F + Sbjct: 539 GAWPDLLLIDGGAGQLSAAREVLAELGLHG----LAIAGIAKGPDRNAGRERFFMPGKP- 593 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 FSLP + P L+ +Q +RDE+H AIG HR KR K + L+ I G+GP R++ LLK+ Sbjct: 594 PFSLPLNDPVLYFVQRLRDEAHRFAIGSHRAKRKKAMTENELDGIPGIGPTRKRALLKHF 653 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKIFWS 607 G + + A + ++ V GIS +A++I+ Sbjct: 654 GSAKAVSRAGLSDLRAVDGISAAMAQQIYDW 684 >UniRef50_A7HJI0 UvrABC system protein C n=3 Tax=Thermotogaceae RepID=UVRC_FERNB Length = 563 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 173/602 (28%), Positives = 291/602 (48%), Gaps = 51/602 (8%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDV 68 L+ + ++ GVY G IY+GKAK+LKKRL+S+F++ K++ +V + + V Sbjct: 5 KILEKIPNKSGVYIFK-KGEEYIYIGKAKELKKRLTSHFKA--KDGKSKLIVEEADDLQV 61 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEY 128 + E EAL+LE N I Y+P+YN +L+D + YP+I +S D P L + R K GE+ Sbjct: 62 ILLDNEKEALILEANMIYKYKPKYNAMLKDTQVYPYIRISNDEIPYLEIVRNRKGE-GEF 120 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 +GPF N Y R+ +L+K++ R C+ + + + +PC+ Y +G C G C+ S E+Y Sbjct: 121 YGPFTNVYFTRQLFEVLRKVYKFRTCKRDITKLK-KPCMDYHLGLCSGVCI-NEESPEDY 178 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSN 247 +++ V+ L GK V++ + +ME ++ L+FE AA+ RD + +V E Q V Sbjct: 179 KKKINEVKNVLKGKFSNVISFIKLKMEQHARLLDFENAAKYRDILLNFNKVMESQGVVLP 238 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 ++D++ V IR G ++ Y + F+ FY Q Sbjct: 239 ESVNIDLVV----GKHKTFLVFKIRSGYLISKLVYEYDG--------HIVDFIELFYTQN 286 Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + +P +I+++ + +A L I + + L A N + Sbjct: 287 TS--DIPEKIIVEKENKELKNIAKILG------IKIAQAKDDLELQLLNKAIDNLNYEIG 338 Query: 368 SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYR 426 L+ + L + +L L ++ R+E DISH G+ TVAS VVF+ + EYR Sbjct: 339 LILTNK----IILKQMKELLGLMKLPNRIEGIDISHLAGKNTVASLVVFENGEIKKEEYR 394 Query: 427 RYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 RY + I DD+ ++ V+++RY K +PD++ IDGG GQ+ A E+ Sbjct: 395 RYKLGDIL--DDFESIRIVVKKRYTKHN----VPDLLFIDGGIGQVNAAYQSLKEIG--- 445 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 + ++G+AK + L L D P L ++ IRDE+H A R Sbjct: 446 KERECDVIGLAKEEETIVTLH--------GEIRLAFDHPVLRLLVKIRDETHRVANEFTR 497 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 K S L+ I+ +GPKR++ LL+ ++ + + S EI ++ I + E + Sbjct: 498 NLSTKKSLRSILDEIKWIGPKRKKTLLERYTSIEEILSVSRSEIEQL--IGKKATESLLN 555 Query: 607 SL 608 L Sbjct: 556 EL 557 >UniRef50_D0WMS6 Excinuclease ABC subunit C n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMS6_9ACTO Length = 734 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 165/479 (34%), Positives = 246/479 (51%), Gaps = 35/479 (7%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEAL 59 M+D + + +QPGVYR D G V+YVGKAK+L+ RLSSYF+ S + A+ Sbjct: 1 MADPRQYRPEQGAIPTQPGVYRFLDGEGRVLYVGKAKNLRARLSSYFQDPAGLSDRIRAM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V + + V +E EAL LE+ +IK + P +NV+ RD+KSYP++ +S G+ +PR+ + Sbjct: 61 VYTAEAVKWVVVGSEVEALTLEYLWIKEFTPTFNVVFRDNKSYPYLAVSLGEEYPRVWVT 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY---RNRSRPCLQYQIGRCL 175 R Y GP+ +A+RETL L +FP+R C S + R RPCL IG+C Sbjct: 121 RQEHRKGTRYLGPYTKVWAIRETLDQLLSVFPMRSCTKSQFNQARRLGRPCLFGHIGKCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC+E V+ EE+ + + F+ G + + RM A+ E+E AAR+RD+I A Sbjct: 181 APCIE-RVTPEEHRETAMSLIRFMEGGGSKAIATRRKRMLEAANAEEYETAARLRDEISA 239 Query: 236 VRRVTEKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 + V E+ V N D+D+ G+AFD A V V ++R G++ G +++ GG ELSE Sbjct: 240 LEAVNERNVIVLNENLDVDIFGIAFDEIEASVQVFYVRGGRIRGQQAWISDEIGGLELSE 299 Query: 295 VVETFVGQFYLQ--------------------GSQMRTLPGEILLDFNLSDKTLLADSLS 334 +V V Q Y + + +P EI + D L L+ Sbjct: 300 IVSNLVLQVYGDVKFDEVVAVPEASRSVDDRAHTPLGAIPSEIWVPGLPEDALELQKWLA 359 Query: 335 ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQST----VHQRLTALASVLKLP 390 E G + ++T RGD+A+ R NA AL ++ Q L L L+L Sbjct: 360 ERRGGTVRLKTPRRGDKAKLAHTVRLNAEQALARHKLARAGDITVRSQALEELRDALELD 419 Query: 391 EVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP---GDDYAAMNQV 445 R+EC+D+SHT G VAS VVF+ +A+YR + + G DD AAM++V Sbjct: 420 RAPLRIECYDVSHTQGTHQVASMVVFEDGLAKKADYRHFIVRGPDGEGAADDTAAMDEV 478 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 17/161 (10%) Query: 448 RRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLE 507 RR+ PD+I++DGG Q+ A+ V E ++G+AK LE Sbjct: 587 RRFAYK------PDLIVVDGGLPQVNAAQRVVEETG-----ADVRIVGLAK------RLE 629 Query: 508 TLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPK 567 ++ E LP SP+L ++Q +RDESH AI HRKKRAK S+L+ + G+G Sbjct: 630 EVWIPGEDFPVVLPRRSPSLRLLQQLRDESHRFAITFHRKKRAKAMTRSALDAVPGLGAA 689 Query: 568 RRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 +++ LL +G L ++ AS EE+ KVPGI LA I Sbjct: 690 KQKALLGSLGSLAKIKAASQEELLKVPGIGPALARAIVEHF 730 >UniRef50_B3DRV5 UvrABC system protein C n=18 Tax=Bifidobacterium RepID=UVRC_BIFLD Length = 746 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 161/571 (28%), Positives = 262/571 (45%), Gaps = 77/571 (13%) Query: 1 MSDQFDA-KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEA 58 + D D + + ++PGVY+ D G VIYVGKAK+L+ RL++YF+ L +T+ Sbjct: 2 LGDSRDLFRPKTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQT 61 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAM 117 +V + ++ TV TE E+L LE+ +IK + PR+NV RDDK+YP++ + +G+ PR+ + Sbjct: 62 MVLTARSLEWTVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWV 121 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRC 174 R K YFGP+ + +R +L L + FP+R C +V+ RPCL IG+C Sbjct: 122 TRSRKRRDTRYFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKC 181 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGK-DDQVLTQLISRMETASQNLEFEEAARIRDQI 233 PCV + +E+ + E + ++G+ + QL M+ AS LEFE+AAR+RDQI Sbjct: 182 SAPCV-NRIEADEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQI 240 Query: 234 QAVRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 Q + V ++ V + D DV G A D A VH ++R G + G R++ + + Sbjct: 241 QMLETVVQQNAVVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDD 300 Query: 293 SEVVETFVGQFYLQG--------------------------------------------- 307 ++++ + Q Y Sbjct: 301 ADLMADLLVQVYSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQE 360 Query: 308 --------SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + + +P EI++ + + L L+ L G + ++ RGD+ + + A Sbjct: 361 TTGRADLLAPIAPVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRAN 420 Query: 360 TNAATALTS----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGEQTVASCV 413 NA+ AL ++S Q + +A L L E R+EC+DIS+T G VAS V Sbjct: 421 ENASQALQRSKMSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMV 480 Query: 414 VFDANGPLRAEYRRYNITGITPG---DDYAAMNQVLRRRYGKAI------DDSKIPDVIL 464 VF+ ++EYRR+ I G DD +A+ + L RR+ + + Sbjct: 481 VFEDAIAKKSEYRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVA 540 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLG 495 GK A A A + + G Sbjct: 541 SAAGKMTTAVAAETIAANGNDNGEGGSDISG 571 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 10/151 (6%) Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 P+++++DGGK Q+ A + V+ + G+AK LE ++ + Sbjct: 605 PNLVVVDGGKPQVMAAAKALEDCGVN----DVAVCGLAK------RLEEVWVPDDDYPII 654 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGL 579 L S ++++Q +RDESH AI HR++R K S+L+ I G+G ++ LL + G + Sbjct: 655 LKRQSEGMYLLQRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSV 714 Query: 580 QGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + +R ASVE+ KV GI AE ++ +L Sbjct: 715 KAMREASVEDFEKVKGIGHAKAEALYTALHE 745 >UniRef50_B4U9X0 UvrABC system protein C n=3 Tax=Aquificaceae RepID=UVRC_HYDS0 Length = 565 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 170/607 (28%), Positives = 289/607 (47%), Gaps = 48/607 (7%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 D A ++ +PGVY + IY+GKA ++KKRL + + S+K + + Sbjct: 1 MDIVALIEKAPEEPGVYIFKNQK-HYIYIGKAINIKKRLLQHLKEREQSKKEANIFNHSK 59 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +++ VT E EALLLE + I+ ++P+YNVLL+ YP I L+ D +P + + R Sbjct: 60 ELEWIVTRNEYEALLLEMDLIRTHKPKYNVLLKHGSGYPVILLTDDEYPTVKITRDT-SE 118 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 KGE FGPF N + L+ F +R CE R PC+ Y +G C GPC L+S Sbjct: 119 KGEAFGPFLNINKALKIKKLIHATFRLRTCEEM--PKRPTPCMDYHLGLCSGPCA-NLIS 175 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +E+YA V+ + FLSG VL L ++E + NL FE+AA +RDQ+ ++ + + Q Sbjct: 176 KEDYAISVKSAKAFLSGNVKDVLPTLYEKIEQYASNLAFEKAAFLRDQVLVLQNIVDGQG 235 Query: 245 V-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 V +++DV + + + IR +++ + + E++ T + Sbjct: 236 VFLYDIEEVDVFYL----EGYSLWLFIIRNKRLVAHKEFRLNKELIINYEEMLGT----Y 287 Query: 304 YLQGSQMRTLPGEILLDFNL-SDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNA 362 Y+ +P +I+ +F L + L S + N+ LK+ N Sbjct: 288 YMS----NIVPKKIVANFELTENFRLFIKSKRKDVAFSNNIPKP-------LLKIIEKNV 336 Query: 363 ATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLR 422 +K + + + K +ECFDISH G+ TV S VV++ + Sbjct: 337 VLKPDTKEFE--------SEFYKLFGRKAPKLIECFDISHFQGQYTVGSMVVWEDGSLNK 388 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAE 481 ++YRRY I + DD+A++ +VL RR + + + + PD+ LIDGGKGQL+ V + Sbjct: 389 SKYRRYRIKTVDYIDDFASLKEVLSRRAKRIVSKEDQTPDMWLIDGGKGQLSMGIEVKEK 448 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 ++ + +AK E + + +G + V +RDE+H A Sbjct: 449 FLLN-----IYICSLAKK-------EEIIYTEDGLEIPIKNHQALYRVFGLLRDEAHRFA 496 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 I +R R+K +L I+GVG +++++ ++ L + E++ K+ GIS+ + Sbjct: 497 ITYNRNLRSKEFIKDTLSKIKGVGKVKKEIIYRHFDSLYDFIKSDDEKLKKL-GISKSIK 555 Query: 602 EKIFWSL 608 E + L Sbjct: 556 ESVKKIL 562 >UniRef50_P47448 UvrABC system protein C n=2 Tax=Mycoplasma RepID=UVRC_MYCGE Length = 597 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 158/614 (25%), Positives = 279/614 (45%), Gaps = 36/614 (5%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + K LKT +PG Y D+ G V+YVGKA ++ R+ YF+ N KT+ L +QI Sbjct: 4 NLKQKLKTAPKKPGCYLWKDSNGKVLYVGKASNIFNRVHQYFQKN-NPYKTQLLSSQISD 62 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 +D + E +AL LE I YQPR+N++L+ + Y + +++ P L + R + Sbjct: 63 VDFFILKDENDALNLEAKLINQYQPRFNLVLKQNNGYLYFYITKAKKPTLELARKYQIKT 122 Query: 126 GEYFGPFPNGY-AVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 + FGPF + +RE LL K+FP+R+C ++ PC +Q+G C+G C++ + Sbjct: 123 TKCFGPFASSKFKLREIHDLLLKLFPLRKCA---PHQKNHPCFYFQMGLCMGQCMQTD-T 178 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +E+Y Q + + F V+ L + + AS N EFE+A + +AV +T+ Sbjct: 179 KEKYQQVISNIEQFF-NDPSVVINYLKAAEKKASDNQEFEKAQQFLTLQKAVLELTKTHH 237 Query: 245 --VSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSR--SYFPKVPGGTELSEVVETFV 300 + D IG F + + + +G++ + + E+ + TF+ Sbjct: 238 TTIIKQKSSHDFIGYVFQNNVLAITIFCYEKGELTDKEQAVFTLEQTDIVEVESAIITFI 297 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 Y + LP +I + + ++ L++DSL KI V G+ L+ Sbjct: 298 YHHY----KTTPLPSKITVSLDETNLKLISDSL------KIGVFKPKNGNEKLILQTVID 347 Query: 361 NAATALTSKLSQQSTVHQRL---TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDA 417 NA AL +K + ++ + + LA +L + +E D+S V + F+ Sbjct: 348 NAKHALATKWLKFTSNYDKTQLHKDLAQLLNTDYIHSLEIIDVSFYDQNHVVGCMLRFED 407 Query: 418 NGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKA---IDDSKIPDVILIDGGKGQLAQ 474 ++ RRYNI + GD + ++ RR A + D+++IDGGK Q+ Sbjct: 408 GKKIKHLSRRYNINSLKKGDTNH-IALLVYRRILSAMQTKANLPFSDLLIIDGGKAQIKS 466 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 K VF+ + + P+++G+ K + + + + + +SP H + I+ Sbjct: 467 VKQVFS---LFSNVKPPIIIGLVKNKNHQTDH---IMLSDFQVKKIAINSPLFHYLATIQ 520 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 E A K + + + L I GVG Q+L L ++ ASV E+++ Sbjct: 521 TEVDGFAKRSAFNKLSNHQLQNPLLQIPGVGKITAQILFDNFQTLNNIKLASVNELSQF- 579 Query: 595 GISQGLAEKIFWSL 608 I + LA+KI Sbjct: 580 -IKKPLAQKIKTYF 592 >UniRef50_A8FMV1 UvrABC system protein C n=22 Tax=Campylobacter RepID=UVRC_CAMJ8 Length = 600 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 172/621 (27%), Positives = 297/621 (47%), Gaps = 42/621 (6%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-------SNLASRKT 56 + + + LKT+ + GVY+ ++ G ++YVGKAK+LK R+ SYF + S + Sbjct: 3 KENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRI 62 Query: 57 EALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRL 115 + ++ + ++ T++E +AL+LE+++IK P+YN+LLRDDK+YP+I++ + PR Sbjct: 63 QKMIEETVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRF 122 Query: 116 AMHRG-AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRC 174 + R K +K +YFGPF RE L L +P++Q + PC+ YQI RC Sbjct: 123 EITRKLVKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRC 175 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQ 234 L PC + +S E+Y + ++ L ++ L +M +QN +EEAA++RDQI Sbjct: 176 LAPC-DKRISREKYLEILDEAMHALL-NPSILIKNLEKQMLVLAQNENYEEAAKVRDQIV 233 Query: 235 AVRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGT--E 291 ++ + K + +D +V +AF+ M ++ GK++ S + + Sbjct: 234 TIKDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISVNSKITPIKNDIQWD 293 Query: 292 LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR 351 +E+ + + + + + L I + D+ LL + LS+ +KI+++ G++ Sbjct: 294 KNEIYKQLILENFS--MDIPLLANVIYVYEEFEDRMLLEEILSQRFDKKISIKIPKIGEK 351 Query: 352 ARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVA 410 R LA NA + + Q L S +L + +E FD SH G V Sbjct: 352 RRICDLAFQNALLNIEKEQKNHDFTIQ--KELKSYFELENLPNDIEIFDNSHLQGVANVG 409 Query: 411 SCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKG 470 + V + AN +++YR++++ +DY M +VL RR D PD+ LIDGGK Sbjct: 410 AMVTYSANSWDKSKYRKFHLK---HKNDYDQMREVLMRRAL-DFDKIPPPDLWLIDGGKA 465 Query: 471 QLAQAKNVFAELDVSWDKNHPLLLGVAKGA-----DRKAGLETLFFEPEGEGFSLPPDSP 525 L AK + + +L ++K R G FSL + Sbjct: 466 LLDLAKEIIVSSGAN-----VDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDK 520 Query: 526 ALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNA 585 L +Q +RDE+H AI H+ + K SS G+ Q LL Y G + + A Sbjct: 521 KLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQKLLAYYGNFESIYKA 580 Query: 586 SVEEIAKVPGISQGLAEKIFW 606 +++A + + + +A+KI Sbjct: 581 DFKDLAML--VGKKVAQKIKE 599 >UniRef50_C3XEM6 Excinuclease ABC subunit C n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XEM6_9HELI Length = 563 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 171/570 (30%), Positives = 273/570 (47%), Gaps = 43/570 (7%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-----NLASRKTEALV 60 ++ L+ + ++PG+Y+ YD ++YVGKAK+LKKR+ SYF S + + +V Sbjct: 4 TLQSQLQKIPNEPGIYQYYDKDDKLLYVGKAKNLKKRVKSYFTKECSPNPKNSLRIQHMV 63 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 AQI I + E EAL+LE+++IK P+YN+LLRDDK+YP+I ++ D +PR ++ R Sbjct: 64 AQIAHIHTIIVANEHEALILENSFIKSQNPKYNILLRDDKTYPYITINLNDCYPRFSITR 123 Query: 120 G-AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 KH YFGP+P G +E L L ++FPI Q + + +PCL YQIG+CLG C Sbjct: 124 RIIKHKDTLYFGPYPKG--AKEILQSLYELFPIVQQASCL--KGKKPCLYYQIGKCLGVC 179 Query: 179 -VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 ++ ++ EY ++ + + ++ L S M + ++ FE+A +D I ++ Sbjct: 180 SIKDSNTKAEYDSYIQQAIILMK-NTSKMQKVLESSMLSFAEKELFEQAKICKDCIDVLQ 238 Query: 238 RVTEKQFVSNTGD-DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE-- 294 T+ V + DV A + LF+R GKV+ + F K + Sbjct: 239 ETTKFCAVDMKKLYNADVYSFVLQGSNAILFKLFVRDGKVVSTHHQFVKPNMTNDAENPS 298 Query: 295 ----VVETFVGQFYLQG----SQMRTLPGEILL-DFNLSDKTLLADSLSELAGRKINVQT 345 + E + Y Q + TL +I+L D + L DS+ E A + + Sbjct: 299 QKELIREELACEIYTQALLKILKEGTLCDDIILADISTESLQTLKDSIPEFANK---LFA 355 Query: 346 KPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLP-EVKRMECFDISHTM 404 +G++ R LARTNA LT K + + Q L + + L E+ +E FD SH Sbjct: 356 PQKGEKLRLATLARTNALHILTHKTNLYAKQEQVLQEIKELFSLDHEITSIEVFDTSHHS 415 Query: 405 GEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVIL 464 V V + + YR YN+ + D+Y+ M ++L RR K+ D++ P + L Sbjct: 416 SSFIVGGMVSYVDYDFYKPGYRHYNL---SGKDEYSQMREMLTRR-AKSFDENPAPSLWL 471 Query: 465 IDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGAD-----RKAGLETLFFEPEGEGFS 519 +DGG Q+ A + +L +AK R G + F Sbjct: 472 LDGGLAQINLALEILESSG-----ARVSVLAIAKEKRDSKAYRAKGHAKDIVRSKHVEFR 526 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKR 549 L + P L +Q +RDE+H AI HR K+ Sbjct: 527 LQANDPRLQFLQKLRDEAHRFAITFHRNKK 556 >UniRef50_Q6KH99 Excinuclease ABC nuclease subunit C n=2 Tax=Bacteria RepID=Q6KH99_MYCMO Length = 565 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 149/616 (24%), Positives = 270/616 (43%), Gaps = 62/616 (10%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+ D L VT++PGVY + G ++YVGKAK+L+ R+ YF L S KT LV Sbjct: 1 MNKTLD----LDNVTTKPGVYLWKNKHGNIVYVGKAKNLRSRMKQYFSGMLNSYKTIKLV 56 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS--GDTHPRLAMH 118 I +V VT +E EAL+LE N I+ ++P +N+LL DDK YP+I +S + + Sbjct: 57 QIIDSYEVIVTTSEKEALILERNLIETHKPSFNILLIDDKRYPYIKISLLKNDIEIKMVR 116 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R K Y+GPFP G+ + + LL + + V +N S Sbjct: 117 RYKKQNNSFYYGPFPTGFGAKVLINLLIRETKFEKGLPVVNKNAS--------------- 161 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 + +Q + V+ L + + + L +M +++N +FE A I+ I + Sbjct: 162 --------YWKEQFKKVKNILGVNNKEYINDLKKQMFLSAENFQFEIANEIKSTILFLEE 213 Query: 239 VTEKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 + Q V ++DVIG + D +++LF R G +L S + + ++ E + Sbjct: 214 LKNNQVVELKNDKNIDVIGFSEDKNYIFLNMLFYRYGALLSSEDFVLEKL--SDGKETIR 271 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 F+ ++Y + LP E+++ + L + RG L Sbjct: 272 KFINEYYT----LNLLPDELIISLEFTHNDL---------NFDFEILNPKRGTYKNILDN 318 Query: 358 ARTNAATALTSKLSQQSTVHQR----LTALASVLKLPEVKRMECFDISHTMGEQTVASCV 413 A +A K+ + + + L +L+ + D S+T V+ + Sbjct: 319 AIMSANEKREIKILEFERKKEITINNIEKLEELLETKNLNHFLVIDNSNTNNFSPVSVII 378 Query: 414 VFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 + + Y+++N+ D M + R + K ++ IPD++++DG Q+ Sbjct: 379 SYKNGLKDKKNYKKFNLETGDRKADVEYMKEACFRYFSK--KENPIPDLLIVDGALAQVR 436 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 + K + A L + ++G+ K + + + E S D+ L ++ I Sbjct: 437 EVKKILASLFIKLK-----VIGLVKNDKHITSH-IINLKEKREEIS---DASLLIFLKSI 487 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 ++E A HR R K L +I+G+GPK + LL+ + NAS+E++ K+ Sbjct: 488 QEEVDRFAKFHHRSLRTKNTLEGFLLSIKGIGPKTEKKLLENFKNYSEIYNASLEDLEKI 547 Query: 594 PGISQGLAEKIFWSLK 609 +S+ +A+ ++ +K Sbjct: 548 --LSKSIAKTLYEKIK 561 >UniRef50_O84899 UvrABC system protein C n=13 Tax=Mycoplasma RepID=UVRC_MYCAP Length = 571 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 150/612 (24%), Positives = 261/612 (42%), Gaps = 54/612 (8%) Query: 3 DQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQ 62 D+ + LK ++ PGVY DA V+YVGKAK+L+KRL YF + S KT L++ Sbjct: 2 DKNEIILKLKNTSTSPGVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSL 61 Query: 63 IQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK 122 + +V + T EALLLE + + P +N+LL DD+ YP++ + L + K Sbjct: 62 VADFEVYICKTNKEALLLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKD-SLLITLSRK 120 Query: 123 -----HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGP 177 Y+GPFP+GY + L LLQ Y+ G Sbjct: 121 VNTKYTKNTLYYGPFPSGYGAKPILKLLQHE------------------ALYESGL---- 158 Query: 178 CVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR 237 + + Q ++ LS K++ L +L ++M TA+ N++FE A +RD + ++ Sbjct: 159 -LIKNNDSSFWVNQFAKIKEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLK 217 Query: 238 RVTEKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVV 296 ++ E Q + + ++DV D + VLF R G ++ + +P G + E + Sbjct: 218 KLKESQIIELSQYKNIDVFAYKTDEKLIYATVLFYRYGVLINKVN--LTIPLGISIDESI 275 Query: 297 ETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 F QFY + LP ++ + L S + KI K L Sbjct: 276 RVFFEQFYAD----KILPDNFIVQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLN 331 Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 + ++L + + L++L L LP++K + FD S+ V +V+ Sbjct: 332 DYYEKEHLIMQNQLEKADS---MLSSLNKYLNLPKLKNIVIFDNSNINNINPVGVAIVYT 388 Query: 417 ANGPLRAEYRRYNITGIT-PGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQA 475 ++ YR++N+ ++ D + Q + + + ++K D+I+ DGG Q+ +A Sbjct: 389 NGIKNKSLYRKFNLEALSYRSADVDYIRQSITKFFSSD-KNTKDFDLIITDGGLQQVNEA 447 Query: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALH-VIQHIR 534 K L ++ ++G+ K K E + + LH + I+ Sbjct: 448 KKTLKVLGIN-----IPVIGLVKNEYHKTRALIDLNLNE-----IYVNDLELHNYLAQIQ 497 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 E A R ++ L I+G+G Q LL + + +ASVEE+AK+ Sbjct: 498 IEVDRFAKSHFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAKIYDASVEELAKI- 556 Query: 595 GISQGLAEKIFW 606 + +A+ I Sbjct: 557 -VPFNVAKSIKN 567 >UniRef50_Q4A6D1 Excinuclease ABC subunit C n=2 Tax=Mycoplasma synoviae RepID=Q4A6D1_MYCS5 Length = 582 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 143/622 (22%), Positives = 259/622 (41%), Gaps = 60/622 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M + + + LK + +PG Y D VIYVGKA +L R++SYF+ N+ S KT A+ Sbjct: 1 MDKKQELLSLLKNIPKKPGTYLWKDQFDNVIYVGKANNLHNRMNSYFKGNINSFKTYAMF 60 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHR 119 I D + + AL+LE YI Y+P+YN++L DDK YP++ + D+ +R Sbjct: 61 ENIYSFDYFIADSPKAALILEKKYIDQYRPKYNIMLLDDKQYPYLNIKIKDSLEIKQTYR 120 Query: 120 GAKHAK-GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 +K+++ Y+GP+P + + + +LQ+IF Q + Sbjct: 121 VSKNSEFNIYYGPYPQSHLFK-FVKILQRIFLYNQGLLIKDK------------------ 161 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 + + ++ ++ L K++ L +M A+ NL FE A + ++ + + Sbjct: 162 -----PKMYWIEKFNILKEILKFKNNDFNNLLKEKMIAAADNLNFEAAIEYQKALEFISQ 216 Query: 239 VTEKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK--VPGGTELSEV 295 EKQ + + + DV + + + G ++ F + + L + Sbjct: 217 FKEKQIIEISKYKNYDVFSFEEKNESIAIFYMLY----IYGVQNIFQRKIIENYDSLENI 272 Query: 296 VETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYL 355 + F+ +FY + + LP I+LD+ D L D K + +G + Sbjct: 273 ISNFLKEFY----KNKALPDNIILDYKYKDLNLDLDF-------KSKIIFPQKGINHDLI 321 Query: 356 KLARTNAATALTSKLSQ----QSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVAS 411 KLA N + S L+Q + LAS L L ++ + FD SH + S Sbjct: 322 KLANENNNSGYESYLNQKIILEQHKLNLWKNLASELFLDKLNSIFIFDNSHFNNSNPIGS 381 Query: 412 CVVFDANGPLRAEYRRYN----ITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDG 467 C+ + Y +N + D M + + + D+ ++DG Sbjct: 382 CICYTKAEKNPHLYASFNHEKEQKELKIKSDIEYMYHSVYKYLKRNHLFITKDDIFILDG 441 Query: 468 GKGQLAQAKNVFAELDVSWDKN-HPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPA 526 Q+ A+ + + ++ N L G+ K + K L + + S + Sbjct: 442 SSMQIKFAQKAILDFNKDFNANLEIKLFGLVKDKNHKTNLMI-----NSKDEIIKISSES 496 Query: 527 LHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS 586 + I++E A +K + + S L I+G+ K + LLK+ G + NAS Sbjct: 497 FLFLSKIQEEVDLFAKKRMQKNQINLTFKSRLIQIKGISYKTEEKLLKHFGTFANIYNAS 556 Query: 587 VEEIAKVPGISQGLAEKIFWSL 608 EE+ KV ++ +A+KI +L Sbjct: 557 FEELQKVT--NKSIAQKIKENL 576 >UniRef50_B3PN41 Excinuclease ABC nuclease subunit C n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PN41_MYCA5 Length = 561 Score = 364 bits (934), Expect = 6e-99, Method: Composition-based stats. Identities = 133/610 (21%), Positives = 245/610 (40%), Gaps = 62/610 (10%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQI 66 K+ +K V + PGVY D G VIYVGKAK+L+ R+S YF N L S KT ++ +I Sbjct: 4 KSEIKNVPALPGVYLWKDKDGNVIYVGKAKNLQVRMSQYFDKNMLNSYKTPKMLEKIGSF 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHP-RLAMH-RGAKHA 124 + ++ EA +LE I Y+P YNVL S+P+I + + + ++ + K Sbjct: 64 STFIVTSDREAFILERKLIDQYRPFYNVLFPIRSSFPYIRVKLENNGFKIDIQNHYKKEK 123 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 Y+GP P+ + + L + L + G + S Sbjct: 124 NSIYYGPLPSNKNFKPLIRYLNHL------------------LLAKDGL-----LIKNAS 160 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVR-RVTEKQ 243 +E + + E + + + L +++ ++ +FE ++ + + E+Q Sbjct: 161 QEYWKTKFEEAKKIMKFGP-EFRNNLKQKIKETNEVFQFEVSSFYSSILDLLDYNKQEQQ 219 Query: 244 FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + +DV G + + V F R G ++ + + + E F+ +F Sbjct: 220 TFIKSQKSIDVFGFYESQEIMLIFVNFYRSGTLINQQEFALDIKTSKE------NFINEF 273 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAA 363 + LP E++LD + + A K+ + + LA NA Sbjct: 274 LNEFYSKNPLPDEVVLDDKFASFNFDVKEIMVFAKTKMYL---------SLIDLANKNAQ 324 Query: 364 ----TALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQ-TVASCVVFDAN 418 L + LSQ++ ++ L L+ +R+ FD S + G + V F+ Sbjct: 325 NDQQRKLENFLSQKNKAYKTHLKLGDYLE-KTCRRIILFDNSFSKGTDVAIGVGVCFENG 383 Query: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478 + YR +N+ +A + + + + S+ DVIL DG Q+ + Sbjct: 384 EANKNLYRYFNL--FIDNFRHADVEYMRQTSLNYLKEWSEGVDVILADGDIAQIKAIRKS 441 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 L+++ + G+ K + EG+ + D H + ++ E Sbjct: 442 QNALNLN-----IPIFGLVKNDKHETRT---LINEEGKEIVVN-DLDVFHYLSRMQQEVD 492 Query: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598 A + +K K S L I+G+GP L+++ G +RNAS+EE+ K+ + + Sbjct: 493 RFAKWAYHRKNTKNMLNSKLLKIKGLGPHTLTKLIEHFGSYTKIRNASLEELEKI--VKK 550 Query: 599 GLAEKIFWSL 608 +A I L Sbjct: 551 EIALAIKEQL 560 >UniRef50_D1J7M2 UvrABC system protein C (UvrC protein, Excinuclease ABC subunit C) n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7M2_MYCHP Length = 568 Score = 354 bits (909), Expect = 6e-96, Method: Composition-based stats. Identities = 131/611 (21%), Positives = 236/611 (38%), Gaps = 64/611 (10%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQI 63 + + +K V +PGVY + G +IYVGKAKDLK R+ YF S KTE + +I Sbjct: 2 INKEIIIKNVPHKPGVYLWKNKNGNIIYVGKAKDLKNRMLQYFDIKMQNSFKTEKMRQEI 61 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMH---RG 120 + +E EA + E I Y+P YNVL S+P+I + + +L + Sbjct: 62 ADFSTIILSSEREAFIEERKLIDFYKPFYNVLFPTRDSFPYIRVKLLSTNKLIIDIKNHY 121 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 K Y+GP P+ + + L + + ++ + Sbjct: 122 KKEPNSIYYGPIPDNKNFKPLIRYLNHLL--------LSKDGI---------------II 158 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 S E Q+ E + + D L ++ A + FE+A + + Sbjct: 159 EKQSPEFAKQRFEQAKSIMKFGPD-FKRNLKQKINEAIEMNLFEQARFYDQILDLLNYNK 217 Query: 241 EKQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 + Q + T D+DV G V+V+ + G ++ S Y ++ F Sbjct: 218 QSQNIFIKTIKDIDVFGFYQYQNYMMVNVMIYKNGSLVNSYDYIFEIILNE------HEF 271 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 V QF + LP +I++ + + V + +A Sbjct: 272 VNQFIDEFYVNNQLPAQIIIPLKYYELGGFDYND--------KVSAPLNKLNKNLIDIAI 323 Query: 360 TNA----ATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTV-ASCVV 414 NA + + LS+Q+ ++ L S L + +R+ FD S V + Sbjct: 324 ENASNNIEQKIKNYLSKQTKDNEIFNKLCSYLNV-YAERIVLFDNSFLSNTNEVIGAACY 382 Query: 415 FDANGPLRAEYRRYNIT-GITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLA 473 F + YR YN+ + D M Q + D DV+++DG GQ+ Sbjct: 383 FKNGQAFKKFYRFYNLKLNLLRNADVEYMQQT---SFNYLKDLGDQVDVVIVDGSIGQIN 439 Query: 474 QAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHI 533 + K A L+++ L G+ K + + + + D +++ + Sbjct: 440 EVKKSMAFLNLN-----IPLFGLVKNSKHETQK---LIDSNNNEIKID-DQDVFNLLSRM 490 Query: 534 RDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKV 593 + E A + +K+ K ++ L I+G+G K + L+ Y G + ++ AS +EI+KV Sbjct: 491 QTEVDRFAKYRYNQKQRKSMLSNPLLKIKGIGFKTIEKLINYFGSYKKIQQASFDEISKV 550 Query: 594 PGISQGLAEKI 604 ++ +A+ I Sbjct: 551 A--NKKVAKLI 559 >UniRef50_Q98R54 EXCINUCLEASE ABC SUBUNIT C n=1 Tax=Mycoplasma pulmonis RepID=Q98R54_MYCPU Length = 563 Score = 354 bits (908), Expect = 6e-96, Method: Composition-based stats. Identities = 147/611 (24%), Positives = 262/611 (42%), Gaps = 61/611 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 D + L +V +PGVY D +++Y+GKA +L R+ YF+ +L S KT ALV +I Sbjct: 1 MDIR-KLDSVPKKPGVYFWKDQFNSILYIGKANNLNDRMKQYFKGSLNSYKTHALVEKIA 59 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGA-- 121 ++ + EAL+LE N I+ ++P YN+LL DDK + +I + +++ R Sbjct: 60 NFEIIIVQNPKEALILERNLIRKHKPYYNILLSDDKRFSYIKIFLNKDGLEISIARRVYK 119 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 Y+GPFP G+ L LLQ+ ++Y N G +E Sbjct: 120 NSQNTLYYGPFPTGHGSSIILKLLQR--------EALYEN--------------GIFIEN 157 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 S + Q+ E ++ LS K++ L Q+ +M A+QN +FE A ++ + + ++ E Sbjct: 158 KDSV-FWKQRFEKIKDILSFKNNLYLNQIKEKMLIAAQNYQFEVANNLKLSHEYLMKLKE 216 Query: 242 KQFV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 Q ++DVI + G+ + F + G +L + ++ E S VE F+ Sbjct: 217 SQIAELKKILNIDVISIIEKNGLLFSTIFFYKYGVLLNKVDHIIEIKISFEAS--VEEFI 274 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART 360 +FY + + P ++LD + L + V +G + + L Sbjct: 275 NEFY----KNKIAPNLLILDKSFLKFNL-------ELNFETKVLYPKKGIYKKLIDLVNE 323 Query: 361 NAATALTSKLS----QQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFD 416 N T + K + L L++++ + + R+ D SH ++ V + Sbjct: 324 NTLTNINEKEKVHLLKIEKTKNNLDKLSNLINVKNLHRIVMMDNSHFANFHPISVVVSYI 383 Query: 417 ANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI--PDVILIDGGKGQLAQ 474 EYR++N+ D A + + + K I+ PD+ ++DG QL + Sbjct: 384 DGIKNTNEYRKFNL---DVNHDRKADIEYFKEGFLKYINSKSFIVPDLFIVDGSFAQLHE 440 Query: 475 AKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIR 534 K + +++ ++ + K + E L D + + I+ Sbjct: 441 VKKQMKKANLT-----FPIIALVKDDFHRTKK----LIDTNEKEHLLEDKEVKNFLSMIQ 491 Query: 535 DESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVP 594 +E A H +R K SL I+G+GPK + L+ + + NAS +E+AKV Sbjct: 492 NEVDQFAKKHHYNRRDKSSLEGSLLNIKGLGPKMEKKLISHFETYSNIYNASEKELAKV- 550 Query: 595 GISQGLAEKIF 605 I +A+KI Sbjct: 551 -IPLNIAKKIK 560 >UniRef50_C1PCU9 Excinuclease ABC C subunit domain protein n=1 Tax=Bacillus coagulans 36D1 RepID=C1PCU9_BACCO Length = 361 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 134/366 (36%), Positives = 196/366 (53%), Gaps = 17/366 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 L + +PG Y M G +IYVGKAK LK R+ SYF + KT LV +I + Sbjct: 5 ILHKLSLLPEEPGCYLMKSREGEIIYVGKAKKLKNRVRSYFTGS-HDEKTTQLVGEIFDL 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 + VT T TEAL+LE N IK Y+P+YN++L+DDKSYPFI ++ + HP+L + R A KG Sbjct: 64 EWIVTATNTEALVLEMNLIKQYRPKYNIMLKDDKSYPFIKITDERHPQLILTREAGRDKG 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 +YFGPFPN A ET +L +++P+R+C + +RPCL YQ+G C+G C V EE Sbjct: 124 KYFGPFPNARAAAETKKVLDRLYPLRRC----PESSTRPCLYYQLGLCIGTCAR-EVGEE 178 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FV 245 EY +Q+ + F G VL + M A++ L+FE+A ++++QI + E Q V Sbjct: 179 EYKEQIRKIVHFFHGGYRAVLKDMKKEMLQAAKKLDFEKAEQLKEQIMQIEVTMEDQNIV 238 Query: 246 SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N D+ G A G CVHV ++R G+++ F + G E F+ FY Sbjct: 239 LNDPVSRDIFGFAVQDGFMCVHVFYMRDGRIIEREVIF-RPIGSKEPKRAFLDFLQHFYG 297 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + TLP E+L+ + + E+ + RG + ++LA NA A Sbjct: 298 E--SGNTLPKEMLIPAAVGKEAA------EICVS-ARIVQPKRGQKKEMVQLATKNARIA 348 Query: 366 LTSKLS 371 L K+S Sbjct: 349 LEEKVS 354 >UniRef50_Q0RH00 DNA excision repair enzyme UvrABC; UvrC subunit n=1 Tax=Frankia alni ACN14a RepID=Q0RH00_FRAAA Length = 802 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 180/321 (56%), Gaps = 7/321 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M+D + ++ PGVYR D G V+YVGKAK+L+ RL++YF + +T+ + Sbjct: 1 MADPASYRPAPGSIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFADLHTLHPRTQHM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 V +D TV TE EAL LE+ +IK + PR+NV RDDKSYP + ++ + PRL + Sbjct: 61 VQAASAVDWTVVSTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVM 120 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR---SRPCLQYQIGRCL 175 RG K YFGP+ + +A+RETL LL ++FP R C V++ RPCL I RC Sbjct: 121 RGPKRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIDRCS 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PCV G V E + + V+ F+SG+ + L +L M+ A+ E+E AAR+RD A Sbjct: 181 APCV-GRVDAETHREIVDDFCDFMSGQTGRYLRRLEQEMQQAASAQEYERAARLRDDAGA 239 Query: 236 VRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSE 294 +RR EKQ V G D DV+ A D A V + ++R G+V G R + ++ Sbjct: 240 LRRAIEKQAVVLPDGTDADVVAFAEDELEAAVAIFYVRAGRVRGQRGWVVDKLDEVTTAD 299 Query: 295 VVETFVGQFYLQGSQMRTLPG 315 +VE F+ Q YL+G+ + T Sbjct: 300 LVEQFLTQEYLEGASLTTAVP 320 Score = 314 bits (806), Expect = 5e-84, Method: Composition-based stats. Identities = 100/362 (27%), Positives = 161/362 (44%), Gaps = 72/362 (19%) Query: 313 LPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQ 372 +P EIL+ D +A+ L G ++ ++ RGD+ L+ NA AL ++ Sbjct: 383 IPREILVPALPPDADAVAELLGVARGGRVEIRVPRRGDKRTLLETVERNARQALALHRTK 442 Query: 373 QST----VHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRR 427 +++ + L L L+LP+ R+EC+D+S+ G VAS VVF+ ++EYRR Sbjct: 443 RASDLTARSRALAELQEALELPDAPLRIECYDVSNIQGTNVVASMVVFEDGLARKSEYRR 502 Query: 428 YNI------------TGITPGDDYAAMNQVLRRRYGKAIDDSK----------------- 458 ++I DD A+M + + RR+ + + + Sbjct: 503 FSIRGGAGGAGREHGRADAGQDDVASMYETIHRRFSRYLAERSRTGELVDIVDSAEDLAA 562 Query: 459 --------------------------------IPDVILIDGGKGQLAQAKNVFAELDVSW 486 P+++++DGG Q+A A EL + Sbjct: 563 DTGVRDGRGRAVTPGAAQPIDPDTGRPRRFAYPPNLVVVDGGPPQVAAAARALDELGIDT 622 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHR 546 L G+AK LE ++ E LP S AL+++Q +RDE+H AI HR Sbjct: 623 GPGGVALCGLAK------RLEEVWLPDSAEPVILPRTSEALYLLQRVRDEAHRFAITYHR 676 Query: 547 KKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 606 +KR+ TS+L+ + G+G RR+ LL+ G + +R AS EEIA+VPGI A I Sbjct: 677 QKRSAAMVTSALDDVPGLGETRRKALLRQFGSVAKVRAASAEEIAQVPGIGPRTAAAILT 736 Query: 607 SL 608 +L Sbjct: 737 AL 738 >UniRef50_C5ADA8 UvrABC system protein C (Protein uvrC) n=4 Tax=Proteobacteria RepID=C5ADA8_BURGB Length = 756 Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats. Identities = 128/281 (45%), Positives = 189/281 (67%), Gaps = 2/281 (0%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQ 64 F+ K L + PGVYR YDA G+V+YVGKA++LKKR+SSYF S + +V +I Sbjct: 29 FEPKPVLAQLPHLPGVYRYYDAAGSVLYVGKARNLKKRVSSYFTKTQLSPRIAMMVTRIA 88 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RGA Sbjct: 89 RIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHAFPRMAYYRGAVDR 148 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVS 184 K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV G + Sbjct: 149 KNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCV-GAID 207 Query: 185 EEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +YA+ V FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ V +Q Sbjct: 208 AADYARDVANASRFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQA 267 Query: 245 V-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFP 284 + + D+D++ V G CV++ +R G+ LG ++YFP Sbjct: 268 IEVGSESDVDILAVVAHGGRVCVNLAMVRGGRHLGDKAYFP 308 Score = 307 bits (787), Expect = 7e-82, Method: Composition-based stats. Identities = 157/346 (45%), Positives = 200/346 (57%), Gaps = 37/346 (10%) Query: 292 LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR 351 +EV+E F+ Q YL +P +++ L+++ L+ D L E AG K+ V +P+G + Sbjct: 420 ETEVLEAFIAQHYLG----NRVPPVLVVSHALANRELI-DLLVEQAGHKVAVLRQPQGQK 474 Query: 352 ARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQ 407 +L +A NA AL LS+Q + R ALA VL R+ECFDISHTMGE Sbjct: 475 RAWLAMAEQNARLALARLLSEQGSQQARTRALAEVLGFEADDLAQLRIECFDISHTMGEA 534 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSK--------- 458 T ASCVVF + EYRRYNITGITPGDDYAAM QVL RRY K ++ + Sbjct: 535 TQASCVVFHHHKMQSGEYRRYNITGITPGDDYAAMRQVLMRRYEKMVEQAGEAAAADAQA 594 Query: 459 ---------------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRK 503 +P+++LIDGGKGQ+ A+ VF EL + L+GVAKG RK Sbjct: 595 GIDGDATRASASAALLPNIVLIDGGKGQVEVARQVFTELGLDCSM----LVGVAKGEGRK 650 Query: 504 AGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEG 563 GLETL F L +S AL ++ IRDE+H AI G R KRAK + TS LE +EG Sbjct: 651 VGLETLIFADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEG 710 Query: 564 VGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 VG KRRQ LL GGL+G+ ASVEE+A V GIS LAE+I+ L Sbjct: 711 VGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYRQLH 756 >UniRef50_B8DGB7 UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C) n=18 Tax=Listeria RepID=B8DGB7_LISMH Length = 366 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 123/380 (32%), Positives = 200/380 (52%), Gaps = 20/380 (5%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M D+ + L + PG Y D ++Y+GK+K LK R+ SYF S KT LV Sbjct: 1 MDDK--LQKKLTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSKQI-GKTARLV 57 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120 QI+ +++ +T +E EALLLE I+ YQP +N+ L++ SYP+I ++ + +P + + Sbjct: 58 RQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFE 117 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 K YFGP+P ++ R+T+ L++K+FP+ +C+ RPCL Y +G CLGPC + Sbjct: 118 VKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPC-Q 172 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 + Y +Q+ + FL G V +L M TA++NLEFE AA +RD+I A+ Sbjct: 173 AEIDPAVYKKQIHKISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETI 232 Query: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 EKQ + G + D+IG V V F+R G + GS+ + ++ L E + F Sbjct: 233 EKQHIIFPGLKNRDIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKF 290 Query: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLAR 359 + QFY + ++ P E+L+ L DK LL + L + +G + + ++LA Sbjct: 291 LNQFYEDPNNIQ--PKELLIAEKL-DKKLLNEPLRKAC------LFPQKGGKKKQIELAI 341 Query: 360 TNAATALTSKLSQQSTVHQR 379 NA +A + + ++ Sbjct: 342 ENAKSAYIAYAKMKEYDFEK 361 >UniRef50_A3NXK5 UvrABC system protein C n=59 Tax=Proteobacteria RepID=UVRC_BURP0 Length = 747 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 129/286 (45%), Positives = 191/286 (66%), Gaps = 2/286 (0%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 +F+ K L + PGVYR YDA V+YVGKA+DLKKR+SSYF S + ++ +I Sbjct: 10 RFEPKPILAQLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRI 69 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 +I+ TVT +E EALLLE+N IK PRYN+L RDDKSYP++ L+G PR+A +RGA Sbjct: 70 ARIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHRFPRMAYYRGAVD 129 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLV 183 K +YFGPFP+ +AVRE++ +LQ++F +R CE+SV+ NR+RPCL +QIGRC PCV G + Sbjct: 130 KKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCV-GAI 188 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 EE+YA+ V+ FL G+ +V+ +L +M + L+FE+AA +R+Q+ ++ +V +Q Sbjct: 189 GEEDYARDVDNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQ 248 Query: 244 FV-SNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPG 288 + D+D++ V G CV++ +R G+ LG ++YFP Sbjct: 249 AIDVGGDSDVDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 308 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 152/346 (43%), Positives = 200/346 (57%), Gaps = 37/346 (10%) Query: 292 LSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR 351 +EV+E F+ Q YL +P +++ +++ L+ D L E AG K+ V +P+G + Sbjct: 411 ETEVLEAFIAQHYLG----NRVPPVLVVSHAPANRELI-DLLVEQAGHKVAVVRQPQGQK 465 Query: 352 ARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQ 407 +L +A NA AL LS+Q + R +LA VL R+ECFDISHTMGE Sbjct: 466 RAWLTMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEA 525 Query: 408 TVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAI------------- 454 T ASCVV+ + +EYRRYNI GITPGDDYAAM QVL RRY K + Sbjct: 526 TQASCVVYHHHRMQSSEYRRYNIAGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAA 585 Query: 455 -----------DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRK 503 ++P+V+LIDGG+GQ+ A+ VF+EL + L+GVAKG RK Sbjct: 586 GIDGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM----LVGVAKGEGRK 641 Query: 504 AGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEG 563 GLETL F L +S AL ++ IRDE+H AI G R KRAK + TS LE +EG Sbjct: 642 VGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEG 701 Query: 564 VGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 VG KRRQ LL GGL+G+ ASV+E+A V GIS+ LAE+I+ L Sbjct: 702 VGAKRRQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747 >UniRef50_Q313T1 UvrABC system protein C n=2 Tax=Desulfovibrio desulfuricans subsp. desulfuricans RepID=UVRC_DESDG Length = 700 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 127/316 (40%), Positives = 188/316 (59%), Gaps = 7/316 (2%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVT 69 + + + PGVY D G V+YVGKAK L++R++SYFR + KT A++ ++ Sbjct: 6 ISCIPTTPGVYLYKDPAGKVVYVGKAKHLRRRVASYFRDIQRHTPKTRAMLRSAATVETL 65 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 T TE EALLLE + IK ++PRYN+LLRDDK Y L+ PRL + R + Y Sbjct: 66 STTTEKEALLLEASLIKKHRPRYNILLRDDKQYVLFQLTRKHHWPRLVLTRKVRKDGSAY 125 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEY 188 FGPF +G A R+T ++ K+FP+R+C + +RNR RPCL + + +C GPCV V + Y Sbjct: 126 FGPFTSGQAARQTWKVIHKVFPLRRCSDKAFRNRVRPCLYHFMNQCPGPCVL-DVDRDGY 184 Query: 189 AQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSN 247 Q V V + L+G+ +++ L + M+ AS LEFEEAA +RDQ+QAV R E+Q V Sbjct: 185 MQMVRKVEMLLAGRSTELIDMLRADMQAASDALEFEEAALLRDQLQAVERTVERQAAVLP 244 Query: 248 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 307 D+D +G+A G + VLFIR+ +L R++F E EV+ +F+ Q+Y G Sbjct: 245 GVHDMDAVGLAEAGGGLALSVLFIRRSVLLDKRNFFWSGLTLEEGPEVLLSFLTQYYGPG 304 Query: 308 SQMRTLPGEILLDFNL 323 S +P IL+ +++ Sbjct: 305 S---FIPPRILVPWDI 317 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 22/293 (7%) Query: 328 LLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVL 387 +A+ L+EL G + V + + +A NA ++ +A+ L Sbjct: 415 AVAEMLTELRGGPVRVLPPRNATDNQLVTMATENARED-----ARAEKRPDVAGVIAAKL 469 Query: 388 KLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI-TGITPGDDYAAMNQV 445 + R+E D+SHT G T VVF+ P R +YR Y GDD + Sbjct: 470 GMSAPPVRIEAVDVSHTGGSNTRVGVVVFENGTPARDQYRTYAFADDEAGGDDTGVLALW 529 Query: 446 LRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 RR PD++L+DGG+GQLA + +AK + + G Sbjct: 530 AVRRVHSG---PPWPDLLLVDGGRGQLAAVMTALESAGAGGL---FAVASIAKARNEETG 583 Query: 506 ---------LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTS 556 + +F + SP L +QH+RD HD+AIG HR+ R+ + Sbjct: 584 RADRRAGNLADRIFLPGRSNPVNFKSGSPELLFLQHVRDTVHDYAIGRHRRARSGAALSG 643 Query: 557 SLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 L+ ++G+GP ++L ++ LQ + +A + +A +PGI + A I LK Sbjct: 644 ELQRMQGIGPATARLLWEHFSSLQEMVDAGEKGLAALPGIGKAKAAVIHEGLK 696 >UniRef50_B8DRE6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRE6_DESVM Length = 762 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 136/324 (41%), Positives = 192/324 (59%), Gaps = 12/324 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR------SNLASRKTEALVA 61 K + + PGVY DA G ++YVGKAK L+KR++SYFR + KT A++ Sbjct: 3 KPVMSNIPDTPGVYLYKDAAGRILYVGKAKHLRKRIASYFREAAEGAPPPQTPKTLAMLR 62 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRG 120 Q +++D T TE EALLLE + IK ++PRYN++LRDDK Y L +PRL + R Sbjct: 63 QAERLDTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLQKKHPYPRLDIVRA 122 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180 + +Y+GPF + A R T + + FP+R+C + NR RPCL + IG+CL PCV Sbjct: 123 VRRDGAQYYGPFTSAGAARATWKAIHRAFPLRRCTDRALENRVRPCLYHFIGQCLAPCVF 182 Query: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240 V EEYA V+ V + LSG+ +++ QL + METAS+ LEFE AA +RDQI+AV R Sbjct: 183 -DVPREEYAALVQRVEMLLSGRSGELVGQLRTEMETASEALEFERAAALRDQIRAVERTV 241 Query: 241 EKQ-FVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299 E+Q V G DLDV+G+ G + VLF+RQG VL R++ G E E++ +F Sbjct: 242 ERQAAVLPGGGDLDVVGIVDTGGGLGLGVLFVRQGAVLDGRAFLWPGLGFEEAPELLLSF 301 Query: 300 VGQFYLQGSQMRTLPGEILLDFNL 323 +GQFY S +P I++ + Sbjct: 302 LGQFYGPHSA---IPSRIVVPWLP 322 Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 98/368 (26%), Positives = 143/368 (38%), Gaps = 77/368 (20%) Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 +P + D +L + ++L++L G + + + R + +A NA Sbjct: 402 SAPSSAPIPPQAATDMSL---RAIEETLADLRGGPVRIVAPRSPEENRLVDMAAANAREH 458 Query: 366 LTSKLSQQSTVHQRLTALASVLKLPEV-KRMECFDISHTMGEQTVASCVVFDANGPLRAE 424 +++ T LA L L +R+E DISHT G T A VVF+ P+R Sbjct: 459 -----ARRETEAPLPDLLARALHLSAPVRRVEAVDISHTGGRSTRAGMVVFEDGRPVRDA 513 Query: 425 YRRYNI-TGITPGDD--------------------------------------------- 438 +R Y + D Sbjct: 514 WRAYALDRPADGSADLPDTNAPNGLSDGPPDGVFADLPEGEMAGHAGEVSETSAEHTSQP 573 Query: 439 --------YAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNH 490 YAA+ RRR D++LIDGG+GQL+ E + Sbjct: 574 PTFTAGDDYAALAGWARRRIASG---PPWADLVLIDGGRGQLSAVHRAVREAG---GEGL 627 Query: 491 PLLLGVAK------GADRKAG--LETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAI 542 L +AK ADR+AG + +F L +P L +QH+RD HD AI Sbjct: 628 FALASIAKARTEDGRADRRAGNVADRIFLPGRTNPLPLRDGAPELLFLQHVRDAVHDFAI 687 Query: 543 GGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAE 602 G HR+ RA T L+ +EGVGPK ++L G L +R AS +E+A+VPGI A Sbjct: 688 GRHRRARAGAALTGELQRVEGVGPKTARLLWDRFGTLAAMRAASEKELAEVPGIGPRRAR 747 Query: 603 KIFWSLKH 610 +I LK Sbjct: 748 QIHQRLKE 755 >UniRef50_A0AGX5 Complete genome n=3 Tax=Listeria RepID=A0AGX5_LISW6 Length = 366 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 115/373 (30%), Positives = 186/373 (49%), Gaps = 18/373 (4%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 + L + PG Y D ++Y+GK+K LK R+ SYF S KT LV QI+ + Sbjct: 5 LQTKLTLLPESPGCYIYKDENNEILYIGKSKCLKNRVKSYFHSKQI-GKTARLVRQIRDL 63 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKG 126 ++ +T +E EALLLE I+ YQP +N+ L++ SYP+I ++ + +P + + AK Sbjct: 64 ELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFEAKQDGA 123 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 YFGP+P Y+ R+T+ L+QK+FP+ +C+ RPCL Y +G CLGPC+ + Sbjct: 124 HYFGPYPGRYSARQTVDLIQKLFPLCRCDG----KPGRPCLYYHLGLCLGPCLR-EIDPA 178 Query: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246 Y Q+ + FL G V ++ + M+ A+ LEFE AA RD++ A+ EKQ + Sbjct: 179 VYKAQIHKISRFLEGDVKPVKKKIQAIMQEATDKLEFERAAEQRDKLHAINETIEKQHII 238 Query: 247 NTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 G + D+IG V V F+R G + G + + +V L E + F+ QFY Sbjct: 239 FPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGRKWHVFQV--EKSLQEDLAHFINQFYE 296 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365 + ++ P E+L+ L +L +G + + + LA NA + Sbjct: 297 DPNNIQ--PKELLIAEKLDKLSLAEPLRKAC-------VFPQKGGKKKQINLANENAKST 347 Query: 366 LTSKLSQQSTVHQ 378 + + + Sbjct: 348 YIAYAKMKEYDFE 360 >UniRef50_D1NSJ5 Excinuclease ABC subunit C n=3 Tax=Actinobacteridae RepID=D1NSJ5_9BIFI Length = 841 Score = 331 bits (848), Expect = 6e-89, Method: Composition-based stats. Identities = 117/339 (34%), Positives = 191/339 (56%), Gaps = 9/339 (2%) Query: 1 MSDQFDA-KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEA 58 + D D + + ++PGVY+ D G VIYVGKAK+L+ RLS+YF+ + +T+ Sbjct: 40 LGDSRDLFRPKTSQIPAEPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHQLHPRTQT 99 Query: 59 LVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM 117 +V + ++ TV TE EAL LE+ +IK + PR+NV+ RDDK+YP++ +S G+ R + Sbjct: 100 MVLTARSLEWTVVGTELEALTLEYTWIKEFDPRFNVVFRDDKTYPYLAVSVGERIARTWV 159 Query: 118 HRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRN---RSRPCLQYQIGRC 174 R K YFGP+ + +R++L L + FP+R C +V++ +RPCL IG+C Sbjct: 160 TRSRKRRDTRYFGPYAKVWDLRKSLDTLLRTFPVRTCTPAVFKKAQLTNRPCLLASIGKC 219 Query: 175 LGPCVEGLVSEEEYAQQVEYVRLFLSGK-DDQVLTQLISRMETASQNLEFEEAARIRDQI 233 PCV G +S +++ Q V + L+G+ + L +M+ ASQ+LEFE+AAR+RDQI Sbjct: 220 SAPCV-GRISAQDHRQLVSQLVGVLTGRIGQSYIADLTRQMKQASQDLEFEKAARLRDQI 278 Query: 234 QAVRRVTEKQFVS-NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTEL 292 +R V ++ V + D DV G+A D A VH F+R G + G R++ + Sbjct: 279 GMLRNVAQQNAVVLDQDVDADVFGIASDELEASVHAFFVRGGSIRGERNWSVERIEDVSD 338 Query: 293 SEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLAD 331 ++++ + Q Y Q + + + D+++L D Sbjct: 339 ADLLADLIVQAYSQIMHEQQTSQSVSIAAASDDQSILTD 377 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 69/361 (19%) Query: 308 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 367 + + +P E+L+ + L LS + G ++++ RG + ++ A+ NA+ AL Sbjct: 473 APIAPIPREVLVPLLPTRADELERWLSSMRGSAVSIRVPQRGSKKDLMQRAQDNASQALQ 532 Query: 368 S----KLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHT-MGEQTVASCVVFDANGPL 421 ++S + + + +A L L E R+EC+DIS+T G VAS VVF+ Sbjct: 533 RSKMSRISDMAARTEAMNDVAQALGLAEAPLRIECYDISNTVGGAYQVASMVVFEDAMAK 592 Query: 422 RAEYRRYNITGITPG---DDYAAMNQVLRRRYGKAIDDSKI------------------- 459 ++EYRR+ I G DD +A+ + L RR+ Sbjct: 593 KSEYRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDTGESIDNERRVRDQQASQDQ 652 Query: 460 -------------------------------PDVILIDGGKGQLAQAKNVFAELDVSWDK 488 P++I++DGG Q+ A + V Sbjct: 653 NRQSDGDDGMQSSDGPSTVQQNTDRRHFAYKPNLIVVDGGYPQVLAAAKALHDCGV---- 708 Query: 489 NHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKK 548 + + G+AK LE ++ + L S ++++Q +RDESH AI HR+ Sbjct: 709 DDVAVCGLAK------RLEEVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQA 762 Query: 549 RAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 R K S L+ I G+GP ++ LL + G ++ +R AS+E++ V G+ + A+ IF +L Sbjct: 763 RRKGALRSVLDDIPGIGPSYQKKLLAHFGSVRAMRQASLEDLEAVKGVGKAKAKSIFDAL 822 Query: 609 K 609 Sbjct: 823 H 823 >UniRef50_D2L1M6 Excinuclease ABC, C subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1M6_9DELT Length = 695 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 127/316 (40%), Positives = 182/316 (57%), Gaps = 7/316 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEALVAQIQQIDVTV 70 K + PGVY M G ++YVGKAK+L+ RL SYFR + KT ALV +I+ +DV + Sbjct: 7 KNFPTSPGVYLMKGGKGKILYVGKAKNLRARLGSYFRGETGHTVKTAALVGRIEAVDVLL 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYF 129 T +E EALLLE + IK ++PRYNV+L+DDK+Y L PRLA R + YF Sbjct: 67 TASEKEALLLESSLIKKHRPRYNVVLKDDKNYILFKLDKRSDFPRLAFTRRVERDGATYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + A R T L ++FP+R+C + NR RPCL Y IG+CL PCV V +EY Sbjct: 127 GPFTSAAAARTTWKELGRVFPLRKCGDRTLHNRVRPCLYYFIGQCLAPCVL-PVEPQEYM 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNT 248 V V FL+G+ ++L + ME A++ L FE+AA++RD ++A+RR E Q V Sbjct: 186 TLVRRVEAFLTGRSAEILRAVQKEMEEAAERLAFEQAAKLRDLLKAMRRTVEGQATVLTR 245 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D+DV+ +A + VLF+RQG++L +++F E V T + QFY GS Sbjct: 246 LVDMDVVNMAATEHGVGLCVLFVRQGRLLDRKTFFFPGVEAAEADAVAVTALVQFYRPGS 305 Query: 309 QMRTLPGEILLDFNLS 324 + +++ L+ Sbjct: 306 ---FIAPRVVVPATLA 318 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 121/276 (43%), Gaps = 11/276 (3%) Query: 327 TLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASV 386 LA+ L+E G + + + + L++A NA A + ++ L +LA Sbjct: 414 QALAEILAERRGAGVRLGPPRGREERQLLEMAAVNARRAAE--EAAKAAEGDILPSLARK 471 Query: 387 LKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP-GDDYAAMNQV 445 LP + R+E D+SH G+ VVF+ P +++YR Y + DDY A+ Sbjct: 472 FGLPALSRIEAVDVSHLGGKGVRVGMVVFEDGTPQKSDYRAYAFPELEGTSDDYLALATF 531 Query: 446 LRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAG 505 +R PD++LIDGGKGQL E V+ L +AKG R Sbjct: 532 AAKRAASG---PPWPDLLLIDGGKGQLEAVSRSLTEAGVAGA---FALASIAKGERRSQN 585 Query: 506 L--ETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEG 563 + ++ SL SP L +Q +RD HD +IG R+ R S++ + G Sbjct: 586 EMDDVIYVPGRKNPLSLRSGSPELLFLQRVRDTVHDFSIGRQRRARNTASLQSTVLELPG 645 Query: 564 VGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 VGPK ++L + G + +R A EI G+ Sbjct: 646 VGPKTARLLWEAFGSVTAMRAAGAGEIMAKTGLGPR 681 >UniRef50_C4XSA3 UvrABC system protein C n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSA3_DESMR Length = 691 Score = 327 bits (838), Expect = 9e-88, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 184/320 (57%), Gaps = 7/320 (2%) Query: 12 KTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQIDVTV 70 K PGVY M A G ++YVGKAK+L+ RLSSYFR++ + KT ALVA+++ +DV + Sbjct: 7 KNFPMSPGVYLMKGARGKILYVGKAKNLRSRLSSYFRNDAGLTVKTAALVAKVEGVDVLL 66 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLAMHRGAKHAKGEYF 129 T +E EALLLE + IK ++PRYN++L+DDK+Y L PRLA R + YF Sbjct: 67 TASEKEALLLESSLIKKHRPRYNIVLKDDKNYILFKLDKRSPFPRLAFTRRVERDGAAYF 126 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPF + A R T L + FP+R+C + NR RPCL + IG+CL PCV V EYA Sbjct: 127 GPFTSAAAARATWKELGRAFPLRKCGDRAMANRVRPCLYHSIGQCLAPCVL-AVDPGEYA 185 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ-FVSNT 248 V V FL+G+ +VL + ME A+++L FE+AA +RD ++A+++ E Q V Sbjct: 186 ALVRRVEAFLTGRSAEVLRAVEHEMEQAAESLAFEKAAGLRDLLRAMKKTVEGQATVLTR 245 Query: 249 GDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGS 308 D+DV+G+A + VLF+RQG++L +++F E T + QFY Sbjct: 246 LIDIDVVGLAAVPTGVGLCVLFVRQGRLLDRKTFFFPGVTADEARGAAVTAMLQFYR--- 302 Query: 309 QMRTLPGEILLDFNLSDKTL 328 +P I++ L+ Sbjct: 303 PESFIPPRIVVPDVLTAAEA 322 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 122/282 (43%), Gaps = 11/282 (3%) Query: 321 FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRL 380 ++D LA+ L E G + + + + + L A A ++ + ++ L Sbjct: 404 EAVADSLALAEILEERRGGALRLGSPRGREERKLL--AMAEANAGRAAEEAAKAAERDLL 461 Query: 381 TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPG-DDY 439 ALA L + R+E D+SH G+ VVF+ P +++YR Y DDY Sbjct: 462 PALAKAFGLARLSRIEAVDVSHLGGKGVRVGLVVFEEGAPRKSDYRSYGFPEAEGSSDDY 521 Query: 440 AAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKG 499 A+ +A PD++LIDGGKGQLA + L + L +AKG Sbjct: 522 LALAAFAA---KRAEAGPPWPDLLLIDGGKGQLAAVER---ALGQAGAGGAFALASIAKG 575 Query: 500 ADRKAGLET--LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 R +F L P SP L +Q +RD HD++IG R R K S Sbjct: 576 DRRSQNEMEDVIFVPGRKNPLGLRPGSPELLFLQRVRDTVHDYSIGRQRLARKKTGLRSD 635 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQG 599 L + G+GPK ++L + G +R ASVE + + G+ Sbjct: 636 LLALPGIGPKTARLLWEAFGSTAAMRAASVEAVRERTGLGPA 677 >UniRef50_A8GXA7 Excinuclease ABC subunit C n=2 Tax=Rickettsia bellii RepID=A8GXA7_RICB8 Length = 356 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 126/355 (35%), Positives = 195/355 (54%), Gaps = 13/355 (3%) Query: 7 AKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI 66 K L V + PG+Y MY++ +IY+GKAK+LKKRL+ Y+ N + +V Q+ + Sbjct: 6 IKKLLPLVPTLPGIYLMYNSDKEIIYIGKAKNLKKRLN-YYSKNNLRGRIARMVHQVYLV 64 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAK 125 + VT +E+EA LLE IK +QPR+N+LLR DKS +I L S P L Sbjct: 65 EYKVTISESEAFLLETQLIKQHQPRFNILLRRDKSASYIKLRSDHDFPTLVKCYLDNSTG 124 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 + FGPF +G+ + + LQKIF +R C +S + R RPCL+Y+IG+C PC G +S+ Sbjct: 125 NKLFGPFTSGHQIDLIITELQKIFKLRTCSDSDFAFRKRPCLEYEIGKCFAPCT-GNISK 183 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E+YA+ +E + FLS +++L +L +M+ S + FE+AA IRD+I ++ K + Sbjct: 184 EDYAELIEQINDFLSSNIEKLLGKLALKMQALSDHSHFEKAALIRDRINLIK--LSKLRI 241 Query: 246 SNTGD---DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 + D DVI + D + VL R G+ G ++Y P +EV+E+F+GQ Sbjct: 242 GKQYEGIIDADVIVI-RDDSRFQIKVLLYRGGQKWGEQNYSPIYNQTNTKAEVLESFIGQ 300 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKL 357 FY Q R EI+++ + + + SL +L K RG +A+ L+ Sbjct: 301 FY----QTRKPAKEIIINVPIQNSEPIISSLKKLYNIKTKFIVPKRGSKAQILRD 351 >UniRef50_B2S367 UvrABC system protein C n=4 Tax=Treponema RepID=UVRC_TREPS Length = 691 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 116/340 (34%), Positives = 165/340 (48%), Gaps = 14/340 (4%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQ 65 + + S GVY D G VIYVGKAK L+ RL+SYFR KT L+++ Sbjct: 10 TLRIQALSAPSTSGVYLWKDVHGVVIYVGKAKSLRTRLTSYFRC-RHDPKTRVLMSRAAA 68 Query: 66 IDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAK 125 ++ T E EALLLE+ IK + PRYN+ L+D K+YP + L+ + PR+ R Sbjct: 69 LEYLQTQHEYEALLLENTLIKKHTPRYNICLKDGKTYPLLKLTCEPFPRIFRTRQFCQDG 128 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 YFGPFP+ + L L+ + + IR C R R PCL Y + RC PC G VS Sbjct: 129 ARYFGPFPDVQILDSFLKLILRTYKIRTCT--TLRKRKNPCLYYHLKRCDAPCC-GWVSP 185 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 Y + + + L L G D + +L RM+ A + FE AARIRD IQA+R +T K V Sbjct: 186 RTYQKDIHEITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLV 245 Query: 246 SNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 + + D I + + VL +R GK+ G + + E E++ F+ +Y Sbjct: 246 QDMDERARDYIAWSSTGAIVTFAVLRMRGGKLNGRELFRTRSLKNEE--EILSEFLITYY 303 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQ 344 T+P + + S L LS AG + V Sbjct: 304 SDH----TIPPHLFVH---SSAGLAEHWLSHKAGTQCTVT 336 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 14/260 (5%) Query: 350 DRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQT 408 L +A+ NA +T L + L L L L + +E FDISH G+ T Sbjct: 412 HHRAILAMAQLNAHEDITRYLKNRGAD-DALKELQKQLHLARIPTLIEGFDISHLGGKYT 470 Query: 409 VASCVVFDANGPLRAEYRRYNITGIT-PGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDG 467 VAS + F P YR +N+ DD+A+M + + RRY + +PD+IL+DG Sbjct: 471 VASLICFKNGAPDTKNYRLFNLRAHDTRIDDFASMREAIARRYTHTPEGYTLPDLILVDG 530 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G G ++ A++V L +S L+G+AK E LF L +PAL Sbjct: 531 GIGHVSAAQHVLDALGLS-----IPLVGLAK------RAEELFIPNSPTPLVLDRRNPAL 579 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 H++Q IRDE+H AI +R R K + S E + VG R LL + G + L++A+ Sbjct: 580 HMLQRIRDEAHRFAITRNRHLRTKKELVLSFERLPHVGKVRAHRLLAHFGSFRSLQSATP 639 Query: 588 EEIAKVPGISQGLAEKIFWS 607 ++IA I A I + Sbjct: 640 QDIATAIHIPLTQAHTILHA 659 >UniRef50_C5J756 Excinuclease ABC subunit C n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J756_MYCCR Length = 514 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 124/554 (22%), Positives = 222/554 (40%), Gaps = 63/554 (11%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH 72 + Q GVYR YD ++YVGK+K++ +R+ Y ++ S KT L+ + I T+ Sbjct: 12 NLPKQAGVYRFYDDQKRLLYVGKSKNIYERIHQYATGSINSYKTGKLLQETVDIQYTIVA 71 Query: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF--G 130 ETEAL+LE I LYQP+YN+ L+DDK YP+I + D +YF G Sbjct: 72 NETEALVLEKRLISLYQPKYNIELKDDKGYPYIQIRKDNKLISIDIVYKIKRGHKYFSYG 131 Query: 131 PFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQ 190 PF A E LL+ L Y+ G ++ E + Sbjct: 132 PFLKRSAAFEIKKLLESE------------------LLYEKG--------AKITFEN-QE 164 Query: 191 QVEYVRLFLSG--KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK-QFVS- 246 QV+ + + + +M A +N+++E A + + I ++++ + Q V Sbjct: 165 QVDDAFNLSKDILQKRKWINYYEQKMNFAIENMQYEIAQKYFESITVLKQMAHQYQNVDL 224 Query: 247 NTGDDLDVIGV-AFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305 N+ ++LD + + + LF R G +L R++F + L + +FV +Y Sbjct: 225 NSDENLDFMYFDSVGKNNLVITFLFYRNGYMLSHRTFFVDILF--SLENTITSFVNNYY- 281 Query: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTN---- 361 + LP + + + I ++ + L+ A+ N Sbjct: 282 ---KNNFLPQYVFVTEES------SRFFENHLDFHIPIKIARSKSHLQILENAKINNNDF 332 Query: 362 AATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPL 421 L KL Q++ ++ L + L L + + D SH + + F Sbjct: 333 IKKDLRIKLEQENNLNNILKQMRYELNLEKNDIILLIDNSHIANQLPTTGVIYFLNGLHS 392 Query: 422 RAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAE 481 + R +N TG G D + Q L++ + + ++ IPDVI +DGG Q+ + + Sbjct: 393 KKYNRFFNYTGSKKG-DVNYLEQGLKKHFS--VKNALIPDVIFVDGGIAQINTVETILLA 449 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 + L G+ K + K + G + + ++I ++++E + Sbjct: 450 KSLK-----IPLFGLVKNSRHKTDH---ILDKFGNKLEISQN--VFNLIANMQEEVDIFS 499 Query: 542 IGGHRKKRAKVKNT 555 R K K T Sbjct: 500 KSKLRNKIIKKILT 513 >UniRef50_B8FTB6 Excinuclease ABC C subunit domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FTB6_DESHD Length = 376 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 103/349 (29%), Positives = 164/349 (46%), Gaps = 12/349 (3%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRS-NLASRKTEAL 59 M D+ K LK + QPGVY M D+ G +IYVGKAK+LK R+S YF K E + Sbjct: 1 MEDKNCLKEKLKDLPEQPGVYLMQDSLGNIIYVGKAKNLKNRVSQYFYKQKDRDPKVEEM 60 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 + +I + + TE +ALL E IK +P YN +++ + Y +I + ++ PRL + + Sbjct: 61 ILRIADWEYRIVDTELDALLEECRLIKEIKPHYNRQMKNHQKYVYIKIPDESFPRLDIVQ 120 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCV 179 + G Y+GPF + + V + L IF IR+C CL Q+G C+G C Sbjct: 121 EREAGGGIYYGPFSSRHRVETAVEGLSDIFLIRKCSAPGRSKGGNGCLYRQLGTCVGVCT 180 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 G VS EEY ++++ V + D + +L SRM A + L FE AAR R+ + +R + Sbjct: 181 -GKVSSEEYRERLDGVCQAIEAGDKGAMKELSSRMARAVEGLNFEMAARYREYLLGLRYI 239 Query: 240 TEKQFVSN-TGDDLDVIGVAF-DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVE 297 +Q T + ++ + D V V I+ +V+ SR L E ++ Sbjct: 240 QGRQKFLKGTYRNKSLLALEQLDTEKKTVKVFLIKGNRVVTSRVLTW-------LDEDLK 292 Query: 298 TFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 F+ + Q + L + + +L L + I + K Sbjct: 293 QFLREI-TQALADQPGCSRQLTQQEVDEAQILDSYLRKDRVISIPITQK 340 >UniRef50_Q601Y1 Excinuclease ABC subunit C n=4 Tax=Mycoplasma hyopneumoniae RepID=Q601Y1_MYCH2 Length = 516 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 115/553 (20%), Positives = 218/553 (39%), Gaps = 67/553 (12%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M + L + +Q GVYR YD T++YVGKAK+LK R++ Y + S KTE L+ Sbjct: 1 MEKFQELVKKL-MLPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLI 59 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLA---- 116 + ++I + ETEAL+LE I +QP YN+ L+DD++YP+I L + + Sbjct: 60 RKTKEIKYDILQNETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYK 119 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLG 176 + R K ++GPF N + +L+ I ++ + V Sbjct: 120 ISRSKKSKNIFFYGPFLNKSSALVLKKILENIVLYKKGQQIVQSE--------------- 164 Query: 177 PCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAV 236 E Q+ + L + ++++ ++E A +N +FE A + A+ Sbjct: 165 --------PEILNQKFFLCKKILQEQ--KLISFCEQKLEKAKKNNQFELANEYHKALIAL 214 Query: 237 RRV-TEKQFV-SNTGDDLDVIGVAF-DAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELS 293 ++ E+Q + N ++D + + + F R G L ++++ + Sbjct: 215 KKTKIEQQNIELNNLKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT-- 272 Query: 294 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 353 EV+ F+ +Y ++ P E+++ +E KIN++ Sbjct: 273 EVLINFLNNYY----KINIYPDELVVKNFWPK-------NAEFLDPKINIKIGKSLKYKH 321 Query: 354 YLKLARTNAA----TALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTV 409 L N ++ ++ + L + + LK+ V+++ D S+ Sbjct: 322 ILNTLAKNHQDFISHNFDQEIQKKIKNQKILGLVKASLKIENVEKIMAIDCSNLESNYPT 381 Query: 410 ASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI--PDVILIDG 467 + + R R +N G GD +R+ + K I + K PD+IL+DG Sbjct: 382 TGIIFYINGIYERNYNRFFNYRGTKKGDT-----NYMRQGFEKYIKNPKFLKPDLILVDG 436 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 G Q+ + + + + G+ K K E + + G + L Sbjct: 437 GIQQINLIIEILRK-----NHFEIPIFGMVKNKRHKT--EKII---DLNGKKINVSQDVL 486 Query: 528 HVIQHIRDESHDH 540 + I++ Sbjct: 487 NFFALIQENVDLF 499 >UniRef50_C9M9X8 Excinuclease ABC, C subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9X8_9BACT Length = 496 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 102/250 (40%), Positives = 151/250 (60%), Gaps = 4/250 (1%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQ 64 + LK + ++PGVY M+D G +IYVGKAK+LK+R+SSYF + A + LVA + Sbjct: 3 RIRGLLKKLPNRPGVYLMHDERGKIIYVGKAKNLKRRVSSYFNHKDFAIPRLRKLVATVC 62 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I T ++ EA ++E IK YQP +NV L+ YP+ ++ + PRL + R Sbjct: 63 DITTIRTASDAEAYIVESRLIKAYQPFFNVELKMGTRYPWAVVTDEPFPRLVVTRRRDI- 121 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLV 183 KG YFGPF + A+++ L +++K FP+R C+ + R + SRPCL Y IG+C PCV GL Sbjct: 122 KGRYFGPFISAGALKDVLHIIEKAFPLRSCKYDLTRTKLSRPCLDYGIGKCDAPCV-GLC 180 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + EY ++V+ V L LSG+ ++ +L +RME + LEFE A RD I+++ R+T Q Sbjct: 181 TAREYGERVDDVILLLSGQTADLIARLRARMEECASRLEFEAAGVARDAIRSLWRMTRSQ 240 Query: 244 FVSNTGDDLD 253 DDLD Sbjct: 241 VTGTLSDDLD 250 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 17/296 (5%) Query: 317 ILLDFNLSDKTLLADSLSELAGRKINVQTK--PRGDRARYLKLARTNAATALTSKLSQQS 374 +LL +D + E ++ + R ++ R+ L+ L + S Sbjct: 194 LLLSGQTADLIARLRARMEECASRLEFEAAGVARDAIRSLWRMTRSQVTGTLSDDLDEDS 253 Query: 375 TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGI 433 + AL ++ LP V R++ FDISH G +T VVF+ P + YRR+ I + Sbjct: 254 --WTAMKALQELVGLPTVPWRIDGFDISHHAGYETYGVSVVFEQGYPNPSLYRRFKIRTV 311 Query: 434 TPGDDYAAMNQVLRRRYGKAI-DDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL 492 DD+ ++ + + R+Y A+ ++ +P + +IDGG QLA A+ AEL+++ Sbjct: 312 DWIDDFRSIEETVTRKYRMALRAEAPLPQLAMIDGGPQQLAFARKALAELELN-----LP 366 Query: 493 LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKV 552 + +A+ E ++ P+ LP + PAL ++Q +RDE+H AI HR+ Sbjct: 367 TVALAEEE------ELIYTAPDAAPIRLPRNDPALRLLQRVRDEAHRFAITSHRRASTAR 420 Query: 553 KNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 + S+LE I G+G +LL G ++ + S EE++ V GI A +I +L Sbjct: 421 FSRSALEDIPGIGKHTSALLLSAFGSVRRVAGLSEEELSSVKGIGPVTARRIKEAL 476 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 97/335 (28%), Positives = 178/335 (53%), Gaps = 17/335 (5%) Query: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN-LASRKTEALVAQIQQIDVT 69 L ++ GVY M A V+Y+GK+K+LK R+SSYF N S K L +++ID T Sbjct: 225 LNKFPTKSGVYLMKSAKDEVLYIGKSKNLKSRVSSYFNQNIDRSEKVVELTHHVRKIDYT 284 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYF 129 +T +E EALLLE IK Y+PR+N LL+ +SYPF+ S P+L + + EYF Sbjct: 285 LTGSELEALLLESKLIKQYKPRFNTLLKRYRSYPFLTFSEHEFPKLEIALDVEDGDKEYF 344 Query: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 GPFP+ ++ + +L++ F +R+C + + +R+R C+ + + RC PC +E Y Sbjct: 345 GPFPSLELLQHVVEILERYFKVRKCSDHDF-SRARFCIYFDLDRCFAPCKHPKHYKEAYI 403 Query: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF-VSNT 248 ++++ +R FLSGK+ +++ +I M+ + FEEAA ++ +I ++++V +Q + N+ Sbjct: 404 KELDQIRAFLSGKNPEIINVMIREMKALASENLFEEAADLKQKIHSLQKVFFRQSDIVNS 463 Query: 249 GDDLDVIGVAFDAGMA----CVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFY 304 ++ +VI + + +LF+R G+++ + F + +E + + Y Sbjct: 464 VNENNVIAILPSENFSDCCKEYVLLFVRFGRLIDQKKVF------EDETESLVPVIASVY 517 Query: 305 LQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGR 339 G T + + +L++ + + Sbjct: 518 HNGHSSPTPCR----KEEIDEMQILSNWIYQNKDS 548 >UniRef50_B3E0M3 Excinuclease ABC subunit C n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0M3_METI4 Length = 486 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 106/350 (30%), Positives = 170/350 (48%), Gaps = 34/350 (9%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA---SRKTEALVA 61 + ++ + +PGVY D VIYVGKA DL KR+S YF + RK ALV Sbjct: 3 MSLQEKIRDLPHKPGVYLFKDRFNRVIYVGKAVDLHKRVSQYFHPSRRLRADRKLNALVE 62 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG 120 ++ V H+E EA+LLE IK ++PRYNV RDDK + + + + PR + R Sbjct: 63 AAVDLEYYVVHSEAEAVLLEGRLIKEFRPRYNVSFRDDKRFLLVKVDLSEPFPRFQVTRL 122 Query: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPCV 179 K YFGPF + A+R TL L++K F +R C + + + CL + I C PC+ Sbjct: 123 KKQDNARYFGPFASSSALRTTLNLMKKKFGLRSCSALIPSEKDYKHCLDHIIKNCSAPCI 182 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRV 239 +S+ EY ++V+ FL GK +++ ++ +ME A+Q +FE+AA +R+ ++A+ Sbjct: 183 -AKISQAEYLERVKMACAFLEGKSKEMIDEIRLKMEEAAQAQDFEKAAELRNLLEALEET 241 Query: 240 TE------KQ--FVSNTGDDLD----VIGVAF-------------DAGMACVHVLFIRQG 274 T KQ VS+ +DL+ V+ + + ++ R+G Sbjct: 242 TRPARRFVKQLPKVSSPLEDLEELQAVLALPQVPHLIECFDISNISSTHKVASMVTFREG 301 Query: 275 KVLGS--RSYFPKVPGGTELSEVVETFVGQFYLQGSQM-RTLPGEILLDF 321 K S R Y K G + ++ + + Y + LP I++D Sbjct: 302 KADRSSYRRYRIKTVAGQDDFACMQEVIRRRYKRVLDEGGRLPDLIVVDG 351 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 18/286 (6%) Query: 331 DSLSELAGRKINVQTKPRGDRARYLKLARTNAATA------LTSKLSQQSTVHQRLTALA 384 + + E+ + ++A L+ +L + S+ + L L Sbjct: 207 EMIDEIRLKMEEAAQAQDFEKAAELRNLLEALEETTRPARRFVKQLPKVSSPLEDLEELQ 266 Query: 385 SVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMN 443 +VL LP+V +ECFDIS+ VAS V F R+ YRRY I + DD+A M Sbjct: 267 AVLALPQVPHLIECFDISNISSTHKVASMVTFREGKADRSSYRRYRIKTVAGQDDFACMQ 326 Query: 444 QVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADR 502 +V+RRRY + +D+ ++PD+I++DGGKGQL+ A L ++ ++G+AK Sbjct: 327 EVIRRRYKRVLDEGGRLPDLIVVDGGKGQLSSALKALHSLQLN----DLCVIGLAKEN-- 380 Query: 503 KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIE 562 E ++ E + L S AL ++Q IRDE+H A H+ K S L+ Sbjct: 381 ----EEIYREALPDPLVLDKRSKALRLLQRIRDEAHRVANSYHQLLLKKRMRESILDDCP 436 Query: 563 GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G+ R+++L++ G ++ ++ +SVEEIA V GI + LAE+I L Sbjct: 437 GISENRKKLLIRAFGSIEKIKKSSVEEIAAVKGIGKKLAEQILSFL 482 >UniRef50_A6M201 Excinuclease ABC, C subunit domain protein n=5 Tax=Clostridium RepID=A6M201_CLOB8 Length = 366 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 158/345 (45%), Gaps = 12/345 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQI 63 D K +K + S PGVY M D+ VIYVGK+K+LK R+ SYF S S K LV + Sbjct: 3 MDLKEKVKKLPSSPGVYLMKDSLNNVIYVGKSKNLKSRVGSYFINSKSHSPKILKLVQNL 62 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRG-A 121 + + +T TE EA LLE IK +P YN L+++ KSY +I + + +P + + Sbjct: 63 KDFEYKITDTEFEAFLLECELIKKIKPAYNRLMKNPKSYSYIKIVLNEKYPNIEISHESN 122 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 + YFGP+ + L +++ I QC + + ++ C Y +G C+G C++ Sbjct: 123 ETDGNIYFGPYSRKNIAEKGLYGIKEYCKI-QCS--INQRKTSSCFNYSLGLCIGMCLD- 178 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 EEY + + L+G D +L ++ M +AS+ +FE AA+ RD I +V + E Sbjct: 179 TTPREEYLNILNKIINLLNGNDKIILQEMEHIMNSASEKFDFETAAKYRDYISSVNYLLE 238 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVG 301 K + I + V IR K+L S Y K +++ + Sbjct: 239 KIKIIKFTKKNRNIALLEYLDNDRVKFFLIRGNKILFSEKYILKNFDLEAFKGILKDNIL 298 Query: 302 QFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTK 346 ++ G +P EI + + ++ L + ++ Sbjct: 299 FYFNNG----DVPIEIG-KEEIDESQIIYTYLKNKSNSCKHIIIP 338 >UniRef50_A6DMD6 Excinuclease ABC subunit C n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMD6_9BACT Length = 486 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 135/269 (50%), Gaps = 19/269 (7%) Query: 350 DRARYLKLARTNAATALTSKLS------QQSTVHQRLTALASVLKLPEVKR-MECFDISH 402 ++A + TN +AL + + L L+L +ECFD S+ Sbjct: 226 EKAATYRDIITNLKSALKQRRKFVNASINPKHKEDPVADLKKRLELDITPSVIECFDNSN 285 Query: 403 TMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPD 461 G VAS V F P YR + I + DD+A+M +++ RRY + + + +PD Sbjct: 286 FQGTHAVASMVRFVDGKPDNKSYRHFKIKTVEGPDDFASMKEIVYRRYSRLLREKRPLPD 345 Query: 462 VILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLP 521 +ILIDGGKGQL+ A EL + +H G+AK E LF + EG LP Sbjct: 346 LILIDGGKGQLSSALQSIDELGI----DHIPTYGLAKK------HELLFTRNDSEGKILP 395 Query: 522 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQG 581 S L ++QH+RDESH AI HR+ R K S L+ I G+G KR+ LL + G ++ Sbjct: 396 RTSAGLKMLQHLRDESHRFAINFHRQLRRKQVANSLLDDIPGIGKKRKMTLLNHFGSVRE 455 Query: 582 LRNASVEEIAK-VPGISQGLAEKIFWSLK 609 +R AS ++IA+ VPG+ + A I LK Sbjct: 456 IRKASPQDIAEAVPGLGEKSAHMILEYLK 484 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 170/369 (46%), Gaps = 36/369 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA---SRKTE 57 M+++ D + ++S PGVY D VIYVGKAK L+KRL++YF+++ K Sbjct: 1 MNERDDFSP--RKISSDPGVYVFRDRFAKVIYVGKAKSLRKRLATYFQASRLATADPKLR 58 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLA 116 +L+ I + +E+EALLLE +IK Y P YN+L+RDDK++ + ++ + +PR+ Sbjct: 59 SLINSIAFYETYEVKSESEALLLESRFIKEYSPHYNILMRDDKNFYLVKVTINEPYPRIL 118 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGR-CL 175 + R K YFGPFP A+R T+ L + F +R C + + R + QI R C Sbjct: 119 LTRVRKDDGAAYFGPFPCSSAIRSTVEFLTRYFKLRTCTSRIPDLSDRKHCKEQILRNCS 178 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC + V++E+Y + V + L G+ ++ +L M+ + L+FE+AA RD I Sbjct: 179 APC-DQSVTQEQYRESVGDMIKVLEGQIADIVDELNEAMQNYVEKLQFEKAATYRDIITN 237 Query: 236 VRRVTEKQF-----VSNTGDDLDVIGVAF--------------------DAGMACVHVLF 270 ++ +++ N D + A ++ Sbjct: 238 LKSALKQRRKFVNASINPKHKEDPVADLKKRLELDITPSVIECFDNSNFQGTHAVASMVR 297 Query: 271 IRQGK--VLGSRSYFPKVPGGTELSEVVETFVGQFYLQ-GSQMRTLPGEILLDFNLSDKT 327 GK R + K G + ++ V + Y + + R LP IL+D + Sbjct: 298 FVDGKPDNKSYRHFKIKTVEGPDDFASMKEIVYRRYSRLLREKRPLPDLILIDGGKGQLS 357 Query: 328 LLADSLSEL 336 S+ EL Sbjct: 358 SALQSIDEL 366 >UniRef50_D1N623 Excinuclease ABC, C subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N623_9BACT Length = 505 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 151/291 (51%), Gaps = 21/291 (7%) Query: 329 LADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVH--------QRL 380 +A+ + + + + R ++A +L+ TN + + Sbjct: 224 IAELTAAIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGKRNRIFERPELPGTAPGMAAV 283 Query: 381 TALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDY 439 AL L L ++ R+ FDIS+ +G+ VAS V F P R YRR+ I + DD+ Sbjct: 284 RALGEALGLEKLPSRIIGFDISNILGKLAVASLVAFKEGRPDRDNYRRFKIRTVHQSDDF 343 Query: 440 AAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAK 498 A M++VL R +G+ +++ +PD++++DGGKGQL+ A + E+ ++G+AK Sbjct: 344 AMMHEVLVRHFGRLLEEKRPLPDLVMVDGGKGQLSSAIDALVEIG----CPPLPVIGLAK 399 Query: 499 GADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSL 558 E ++ E L +PAL ++Q +RDE+H AI HR+ R K S L Sbjct: 400 ------RNEEIYLPGRSEPVVLDRHNPALRMLQALRDEAHRFAITYHRELRNKRIEQSRL 453 Query: 559 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK-VPGISQGLAEKIFWSL 608 + I+G+G R++ LL+ G L+ L+ A+ +EIA+ VPGI + LAEKI +L Sbjct: 454 DEIQGIGDTRKKQLLRAFGSLRALKKATPDEIAEKVPGIGEALAEKILAAL 504 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 127/235 (54%), Gaps = 6/235 (2%) Query: 13 TVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL---ASRKTEALVAQIQQIDVT 69 + ++PGVY D G VIYVGKA +L++R+SSYF+ + A K +L+ I Sbjct: 30 EIPAKPGVYVYRDRFGKVIYVGKAANLRRRMSSYFQPSRVVRADAKLRSLINSISDWSYE 89 Query: 70 VTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEY 128 V TE EAL+LE IK + P YNVL+RDDK Y + + + P L + R K+ +Y Sbjct: 90 VVRTEDEALILESRLIKDFAPHYNVLMRDDKRYLLLKIDWHEKFPTLKLARLKKNDGAQY 149 Query: 129 FGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-CLQYQIGRCLGPCVEGLVSEEE 187 FGPFP G A++ TL L F +R C +S +R CL+ + C PC G V+ EE Sbjct: 150 FGPFPKGGALKMTLEFLLAHFGLRACRDSEPDEETRKRCLKRIVKDCCAPCT-GAVTPEE 208 Query: 188 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 Y ++VE L+G ++ + +M A+ FE+AA +RD + + V K Sbjct: 209 YRERVEQAVAVLNGDIAELTAAIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGK 263 >UniRef50_B9P7P3 Predicted protein n=3 Tax=cellular organisms RepID=B9P7P3_POPTR Length = 267 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 117/271 (43%), Positives = 157/271 (57%), Gaps = 22/271 (8%) Query: 357 LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK----RMECFDISHTMGEQTVASC 412 +A+ NA + L+++ + R AL L L +ECFDISHT GE T ASC Sbjct: 1 MAQKNADIQMARLLAEEGSQQARTRALVEALDLACENLDELTIECFDISHTAGEATQASC 60 Query: 413 VVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-------------DSKI 459 VVF + +EYRR+NI GIT GDDYAAM QVL RRY + + ++ Sbjct: 61 VVFHHHKMQSSEYRRFNIEGITGGDDYAAMRQVLTRRYSRVAEAQREAGGAELTGKQPQL 120 Query: 460 PDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFS 519 PD++L+DGGKGQ++ A+ VF +L + + ++GV KG RK GLE L F E Sbjct: 121 PDLVLVDGGKGQVSMAREVFEQLGLDVSR----IVGVEKGEGRKVGLEELVFADGREKIY 176 Query: 520 LPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN-TSSLETIEGVGPKRRQMLLKYMGG 578 L DS AL ++ IRDE+H AI G R RAKV+ LE I GVGPK+R LL+ GG Sbjct: 177 LGYDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGGKLEEIPGVGPKKRARLLQRFGG 236 Query: 579 LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 ++G+ A+VE++ V GIS LAE I+ +L Sbjct: 237 VRGVSEATVEDLCSVDGISAALAEDIYRALH 267 >UniRef50_Q1NJF8 Helix-hairpin-helix motif (Fragment) n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJF8_9DELT Length = 303 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 97/273 (35%), Positives = 141/273 (51%), Gaps = 5/273 (1%) Query: 338 GRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RME 396 + + RGD+ + +A NAA L Q+ Q TA+ ++L + R+E Sbjct: 33 AGPVQLLVPRRGDKKALVGMAHDNAAQVLAEHGRQEQQWEQLATAIQQAMQLVQPPTRLE 92 Query: 397 CFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDD 456 C DIS+ G+Q V S + F++ YRR+ I DDYA M +VL R + Sbjct: 93 CLDISNLGGQQAVGSLISFNSGVKEPGRYRRFKIRTRDTPDDYAMMREVLWRHLSRGWQQ 152 Query: 457 SKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGE 516 +PD++L+DGGKGQL A+ V AEL ++ + P L +AK R+ E +F Sbjct: 153 QSLPDLLLLDGGKGQLGVAQAVVAELGLA--ADKPALAAIAKE--REGEGERIFLPGRKN 208 Query: 517 GFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYM 576 L P+SP L + +RDE+H I HRK R++ + S L+ I GVGP R+ LLK + Sbjct: 209 PLKLAPNSPVLLFMMRLRDEAHRFGITHHRKLRSQQQLASGLDRIPGVGPARKAALLKTL 268 Query: 577 GGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 609 G L+ +R AS E+A V GI LA I L+ Sbjct: 269 GSLEAVRGASRAELAAVSGIGPELAAVIHDHLR 301 >UniRef50_Q7UPD6 Excinuclease ABC subunit C n=5 Tax=Planctomycetaceae RepID=Q7UPD6_RHOBA Length = 474 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 90/268 (33%), Positives = 147/268 (54%), Gaps = 9/268 (3%) Query: 10 FLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQIDV 68 +KT PGVY M D+ G VIYVGKAK+L+ R SSYF ++ +T + I ID Sbjct: 48 KVKTFPQSPGVYLMKDSAGVVIYVGKAKNLRSRASSYFLKAASEDARTADWIGDIADIDF 107 Query: 69 TVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKGE 127 T +E +ALL+E IK QPR N L+DDKS+P++ + + + PR+ + R + Sbjct: 108 VETESEVDALLMESRLIKDIQPRNNKELKDDKSFPYLMITTREEFPRVEVTREPPSKGVK 167 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-----RPCLQYQIGRCLGPCVEGL 182 +GPF + A+R + ++Q+IF R C + + RPCL I +C PC Sbjct: 168 LYGPFTSAGALRGAIQVMQRIFKFRTCSLDISESDERWQWFRPCLLASINQCTAPCNF-R 226 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +S+E+Y + ++ ++ FL G ++L ++ M+ AS+ L+FE AA +RD+I + R+ E+ Sbjct: 227 ISKEDYRRDIKRLQTFLDGGKTKLLREMRGEMKAASKALDFERAAVLRDEINMIERLEER 286 Query: 243 QFVSNTGDDLDVIGVAFDAGMACVHVLF 270 + T +V + G+A + + Sbjct: 287 GELD-THAQPEVFYIDPQKGLAGLKKVL 313 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 12/181 (6%) Query: 377 HQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP 435 + L L VL L E R +E DI+H G +TVAS V F P + YRR+ I + Sbjct: 303 QKGLAGLKKVLGLSETPRVIEGVDIAHLGGNETVASLVQFIDGLPFKPGYRRFRIQEVKG 362 Query: 436 GDDYAAMNQVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLL 494 DD+ ++ +V+ RR+ D + PDV+LIDGGKGQL A F + D+ P ++ Sbjct: 363 IDDFRSIYEVVSRRFRGLSDRQESFPDVLLIDGGKGQLNAAMAAFRDQDI----QPPTVI 418 Query: 495 GVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN 554 +AK E +F E L ++ AL ++Q++RDESH A H R+K Sbjct: 419 SLAKRD------EEIFRPGISEPLKLSKNAFALRLLQYVRDESHRFAQHYHHILRSKSSL 472 Query: 555 T 555 Sbjct: 473 E 473 >UniRef50_D1Y7G8 Excinuclease ABC, C subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7G8_9BACT Length = 575 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 112/375 (29%), Positives = 182/375 (48%), Gaps = 32/375 (8%) Query: 6 DAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEALVAQIQ 64 +A L+T+ +PGVY M+D G VIYVGKAK LK+R+SSYF + A + LV +Q Sbjct: 9 RIRAILRTLPLKPGVYLMHDETGKVIYVGKAKKLKRRVSSYFNHRDFAIPRLRKLVQTVQ 68 Query: 65 QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA 124 I T TE+EA ++E IK QP +NV L+ YPFI ++ + PR+ + + Sbjct: 69 DISFIRTETESEAFIVESRLIKAIQPFFNVELKMGSRYPFIVVTAEKFPRVLVTH-TRPK 127 Query: 125 KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-SRPCLQYQIGRCLGPCVEGLV 183 G FGP+ + A+R L +++ FP R C ++ + + +RPC+ Y IG+CLGPC G Sbjct: 128 TGRVFGPYTSAGAMRSMLNMIKNFFPARNCSMNLEKEKLARPCIMYDIGKCLGPCA-GKC 186 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 +E+EY + V+ + + LSG+ ++ +L RME ++ + FEEAA+ RD I+ + + + ++ Sbjct: 187 TEKEYGETVDDILMLLSGQTADLVARLRPRMERLAKEMRFEEAAKARDTIRDLWKFSRQK 246 Query: 244 FVSNTGDD------------------------LDVIGVAFDAGMACV-HVLFIRQG---K 275 DD +D ++ AG + QG + Sbjct: 247 LSVTLADDLDEDTWFAMTRLRDLCGLPVVPWRIDGFDISHSAGRETYGVAVVFEQGYPNQ 306 Query: 276 VLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSE 335 L R V G + + ET + ++ LP IL+D +L+E Sbjct: 307 SLYRRYAIKTVEGIDDFRSMRETVLRRYRGMIESQLPLPQLILIDGGPEQLAFARQALAE 366 Query: 336 LAGRKINVQTKPRGD 350 + + R + Sbjct: 367 VPVAIRTIALAKRDE 381 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 142/298 (47%), Gaps = 17/298 (5%) Query: 317 ILLDFNLSDKTLLADSLSELAGRKINV--QTKPRGDRARYLKLARTNAATALTSKLSQQS 374 +LL +D E +++ K R K +R + L L + + Sbjct: 200 MLLSGQTADLVARLRPRMERLAKEMRFEEAAKARDTIRDLWKFSRQKLSVTLADDLDEDT 259 Query: 375 TVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGI 433 +T L + LP V R++ FDISH+ G +T VVF+ P ++ YRRY I + Sbjct: 260 --WFAMTRLRDLCGLPVVPWRIDGFDISHSAGRETYGVAVVFEQGYPNQSLYRRYAIKTV 317 Query: 434 TPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPL 492 DD+ +M + + RRY I+ +P +ILIDGG QLA A+ AE+ V+ Sbjct: 318 EGIDDFRSMRETVLRRYRGMIESQLPLPQLILIDGGPEQLAFARQALAEVPVAIRT---- 373 Query: 493 LLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKV 552 + +AK E +F EP+ L + PAL ++Q +RDESH AI HR+KR Sbjct: 374 -IALAKRD------ELIFTEPDKPPLRLDWNDPALRLLQRVRDESHRFAITTHRRKRVSR 426 Query: 553 KNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 + S+LE + G+G + +LL G +Q + S EE+ K PGI A KI L Sbjct: 427 LSRSALEDVPGIGKHKAALLLSTFGSVQRIAALSAEELQKAPGIGPVQAAKILGFLTE 484 >UniRef50_B1ZNL0 Excinuclease ABC C subunit domain protein n=2 Tax=Verrucomicrobia RepID=B1ZNL0_OPITP Length = 510 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 137/286 (47%), Gaps = 18/286 (6%) Query: 331 DSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLS-------QQSTVHQRLTAL 383 + L L TK ++A L+ L + + + L AL Sbjct: 212 EWLETLRAEMAEAATKQLFEKAAELRDVIFALEETLAKTRRFERIDPTRPNVDEEALRAL 271 Query: 384 ASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMN 443 L P + +ECFDISH G VAS V F P + YRR+ I DD+ AM Sbjct: 272 GEALARPPPRTIECFDISHISGTFVVASMVHFANGRPDKDNYRRFQIKSFIGNDDFRAME 331 Query: 444 QVLRRRYGKAIDDSK-IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADR 502 +V+ RRY + ++ + PD+++IDGG+GQ+ A F D++ ++G+AK Sbjct: 332 EVVGRRYRRLAEEGRSFPDLVVIDGGRGQIGAAIKAFVAADLTPPV----IIGLAKK--- 384 Query: 503 KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIE 562 ET+FF E +LP + P L+++Q +RDE+H A + R+K S L+ Sbjct: 385 ---HETIFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANTYNAVLRSKKIRESVLDDFA 441 Query: 563 GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 608 G+GP RR LL + G + LR AS+EEI +V G LA ++ L Sbjct: 442 GLGPVRRAALLAHFGSIDRLRAASIEEIGEVEGFGPKLAAELHAFL 487 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 105/443 (23%), Positives = 171/443 (38%), Gaps = 52/443 (11%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLAS----RKTEAL 59 + K ++ + +PGVY M D G ++YVGKA+ LKKR+SSYF+ A K AL Sbjct: 6 PVNLKEKVRQLPDKPGVYLMKDRLGRILYVGKARSLKKRVSSYFQQGRARTVMQPKIRAL 65 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMH 118 + I D +E EALLLE IK ++PRYN DDK + + + + PR + Sbjct: 66 IPLIHDFDTIEVKSEPEALLLEGKLIKQWRPRYNTDFTDDKRFLLVRVDLREELPRFRLT 125 Query: 119 RGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPC 178 R K YFGPF + +R+TLA +++ F I + + ++ Y R Sbjct: 126 RLKKDDGSRYFGPFAHSGLLRKTLAQMRRQFGILLGDGTPHKLADGTWQLYDDVRQEIYG 185 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRR 238 V+ E Y ++V+ FL GK + L L + M A+ FE+AA +RD I A+ Sbjct: 186 GMLHVTPEAYRRRVDDACAFLEGKSREWLETLRAEMAEAATKQLFEKAAELRDVIFALEE 245 Query: 239 VTEK----QFVSNTGDDLDVIGVAFDAGMA---------CVHVLFIRQGKVLGS------ 279 K + + T ++D + C + I V+ S Sbjct: 246 TLAKTRRFERIDPTRPNVDEEALRALGEALARPPPRTIECFDISHISGTFVVASMVHFAN 305 Query: 280 --------RSYFPKVPGGTELSEVVETFVGQFYLQGSQM-RTLPGEILLDFNLSDKTLLA 330 R + K G + +E VG+ Y + ++ R+ P +++D Sbjct: 306 GRPDKDNYRRFQIKSFIGNDDFRAMEEVVGRRYRRLAEEGRSFPDLVVIDGGRGQIGAAI 365 Query: 331 DSLSE-------------------LAGRKINVQTKPRGDRARYLKLARTNAATALTSKLS 371 + + + L+ R A + + Sbjct: 366 KAFVAADLTPPVIIGLAKKHETIFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANTYNA 425 Query: 372 QQSTVHQRLTALASVLKLPEVKR 394 + R + L L V+R Sbjct: 426 VLRSKKIRESVLDDFAGLGPVRR 448 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 160/353 (45%), Gaps = 13/353 (3%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASR-KTEALVAQIQQI 66 L V +PGVY M + GT +Y+GKAK L RL S+F + +S + ++ +++ + Sbjct: 181 DEVLPDVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSV 240 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAK 125 D T T TE EA+LLE IK +PRYN R + PFI L + +P ++ R + Sbjct: 241 DWTTTATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADG 300 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSE 185 EY+GP N + ++ + F +R+C++ R CL + RC PC Sbjct: 301 AEYYGPVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETK--DA 357 Query: 186 EEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFV 245 E YA VE VR FL+G+D VL + RM+ AS NL FE+AA +RD ++ + R+ EKQ V Sbjct: 358 EAYATVVERVRAFLTGQDQSVLGTMRDRMQRASDNLNFEKAAELRDTLEQLERILEKQRV 417 Query: 246 SNTGDDLDVIGVAFDAGMAC--VHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQF 303 + + A V V+ +R G+ + + S + + Sbjct: 418 AAAPVRQHNAALVHQAPDRAGRVDVMLVRFGR------FEESIACAAPPSPEERDSLLER 471 Query: 304 YLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK 356 + P E + ++ LL+ + V+ PR A Sbjct: 472 CRSVFDVEADPPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLAD 524 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 261 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 14/284 (4%) Query: 4 QFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQI 63 Q + + + PGVY D V+YVG ++DL+ R+ SYF ++ + +V Sbjct: 218 QRRKRHLAEGLPHAPGVYLFRDEQAQVLYVGTSRDLRTRVRSYFTASETRSRMGEMVGIA 277 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKH 123 +D T EA + E I ++P+YN R+ FI L+ + PRL++ R Sbjct: 278 TVVDAIECATALEAEVRELRLIAEHKPKYNRRSRNPSKVHFIKLTREPWPRLSLVRRVLD 337 Query: 124 AKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVY----RNRSRPCLQYQIGRCLGPCV 179 +Y GPF + + LA L + FP+RQC + + PC+ ++GRCL PC Sbjct: 338 DDADYLGPFSSKKTAEKCLAALHETFPVRQCTDRLPGDPAAAGRAPCVLAEMGRCLAPC- 396 Query: 180 EGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA-VRR 238 +G V YA V +R L + D+V+ + ++M + + FEEA RD++ A VR Sbjct: 397 DGSVDHATYAAVVHQLRDTLLRRPDEVVETINAKMGALAADERFEEAGVHRDRLAAFVRA 456 Query: 239 VTEKQFVSNTGDDLDVIGVAFD------AGMACVHVLFIRQGKV 276 Q +S +V+ + G VH +R G++ Sbjct: 457 AARTQRLSALTRCPEVVAARREDDPTGPGGRWAVH--VVRHGRL 498 >UniRef50_D2R0D2 Excinuclease ABC C subunit domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0D2_9PLAN Length = 493 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 142/269 (52%), Gaps = 9/269 (3%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 A ++ PG+Y M D G VIYVGKAK+L+ R SYF R +T V +I ID Sbjct: 66 AKVREFPRTPGIYLMKDDAGRVIYVGKAKNLRSRAGSYFLRGAKEEYRTAIWVDEICDID 125 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFL-SGDTHPRLAMHRGAKHAKG 126 +E +ALL+E IK QP++N L+DDK++P++ + + + PR+ + R Sbjct: 126 YVECESEVDALLMEARLIKDIQPKHNKELKDDKTFPYLMISTREDFPRVEVTRQPADRGV 185 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-----RPCLQYQIGRCLGPCVEG 181 + FGPF + ++R + +LQ+IF R C + RPCL I +C PC Sbjct: 186 KLFGPFASAGSLRGAVQVLQRIFKFRTCSLDIEDGDDRWRWFRPCLLASIQQCTAPCNL- 244 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTE 241 +S++EY + ++ + FL G ++L QL M+ AS+ L+FE AAR+RD+I+ + + Sbjct: 245 RISKDEYRRDIDRLITFLEGGKTRLLKQLTLEMQAASKALQFEVAARLRDEIKMLETLDR 304 Query: 242 KQFVSNTGDDLDVIGVAFDAGMACVHVLF 270 + + +V + G+A + + Sbjct: 305 RGSID-VHAQPEVFYIDPTKGLAGLKKVL 332 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 12/181 (6%) Query: 377 HQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITP 435 + L L VL L E R +E DI+H G +TVAS V F P +A YRRY I G+ Sbjct: 322 TKGLAGLKKVLGLAEQPRTIEGMDIAHLGGGETVASVVQFLDGLPFKAGYRRYRIVGVDG 381 Query: 436 GDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLL 494 DD+ +M++V+ RRY K +D+ PD++LIDGGKGQL A F + D+ ++ Sbjct: 382 IDDFRSMHEVVSRRYRKRVDEGEPFPDILLIDGGKGQLNAAMAAFRDQDIKPPT----VI 437 Query: 495 GVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKN 554 +AK E +F E E L + AL ++Q++RDE+H A H R K + Sbjct: 438 SLAKQE------EEIFLPGERESIKLSRHAFALRLLQYVRDEAHRFAQHYHHILRRKSQL 491 Query: 555 T 555 Sbjct: 492 D 492 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 36/360 (10%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67 + + + +PGVY DA G +YVGK+K+L++R+ +YF + + ++ + + + Sbjct: 220 RHLAEDLPEEPGVYVFTDARGESLYVGKSKNLRRRVRTYFTAAESRQRIREMAGLVAGVT 279 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGE 127 V +E EA + E I +P YN R+ + ++ L+ D PRL++ R Sbjct: 280 PIVCSSELEASVRELRIIAERKPPYNRRSRNPERASWVRLTADAFPRLSVVRAVSGDGAA 339 Query: 128 YFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR-----------------------SR 164 + GP+ + L +FP+RQC ++ + + Sbjct: 340 HIGPYASPREAERAREALLHVFPLRQCAHTFRPPKAVAGGSGGGTRVAPQVVTSGARWTG 399 Query: 165 PCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFE 224 PC+ Q+GRC PC +G SE EYA E R+ ++G V+ +R+ + +L +E Sbjct: 400 PCVVAQLGRCGAPC-DGSESEAEYAVHAEAARVAMTGDPAAVVDAYTARIGELAADLRYE 458 Query: 225 EAARIRDQIQA-VRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYF 283 EAA +RD++ A +R Q +S ++ A +R G++ S Sbjct: 459 EAAHLRDRLTAFLRGARRAQRLSAIAAVAHLVASRRTAAGW--ETCVVRHGRLAASAVLR 516 Query: 284 PKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINV 343 P GT+ + + + V + P L + L+ D L++ A R + + Sbjct: 517 P----GTDPAAFLASLVAT--AEYVPAGYGPSPGALPG---ETELVLDWLADPATRLVEI 567 >UniRef50_C0A483 Excinuclease ABC C subunit domain protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A483_9BACT Length = 540 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 124/249 (49%), Gaps = 12/249 (4%) Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLR 422 +T + AL L LP R +ECFDISH G VAS V F P + Sbjct: 286 RKFERNHPVIATDTAAMRALGEALGLPAPPRTLECFDISHISGTFVVASMVHFADGRPDK 345 Query: 423 AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKI-PDVILIDGGKGQLAQAKNVFAE 481 YRR+ I DD+ AM +V+ RRY + ++ K PD+I+IDGG+GQ+A A FA Sbjct: 346 NNYRRFQIKSFIGNDDFRAMEEVVGRRYRRLREEGKPFPDLIVIDGGRGQIAAALKAFA- 404 Query: 482 LDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHA 541 D P L+G+AK ET+ F E +LP PAL ++Q +RDE+H A Sbjct: 405 ---IIDAPPPPLIGLAKK------HETIIFPDERAPLNLPLTHPALSLLQRLRDEAHRFA 455 Query: 542 IGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA 601 + R++ S L+ +G+G RR LL + G + LR A+ +I +V G LA Sbjct: 456 NTYNADLRSRKIRESVLDDFDGLGEVRRAALLAHFGDIDRLRAATEAQIREVSGFGPKLA 515 Query: 602 EKIFWSLKH 610 ++ L H Sbjct: 516 AELHAWLHH 524 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 100/413 (24%), Positives = 158/413 (38%), Gaps = 72/413 (17%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL----ASRKTE 57 ++ + K ++ + +PGVY M D G +IYVGKAK LKKR+SSYF + K Sbjct: 4 TEPVNLKEKVRHLPDKPGVYLMRDRLGRIIYVGKAKSLKKRVSSYFMPSRAARELHPKIR 63 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSG-DTHPRLA 116 AL+ I D +E EALLLE IK ++P+YN DDK + + + + P+ Sbjct: 64 ALIQLIADFDTIEVKSEPEALLLEGRLIKEWRPKYNTDFTDDKRFLLVRVDPMEPLPKFR 123 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRC-- 174 + R K + YFGPF + +R+TLA +++ F I + + R Y R Sbjct: 124 LTRIRKDTRSRYFGPFAHSGLLRKTLAQMRRQFGILLGDATPRRLDDGRWQLYDDVRQDL 183 Query: 175 ---------------------------------LGPCVEGLVSEEEYAQQVEYVRLFLSG 201 G ++E +Y +VE FL G Sbjct: 184 YSKVGGGGGGEAGAVERTAGEVGTAGGAGMAGGAGAAGGNEITEADYRARVEAACEFLDG 243 Query: 202 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIG----- 256 K + L QL +M A+ EFE+AA +RD + A+ Q + VI Sbjct: 244 KSREWLAQLREQMSAAAAKHEFEKAAELRDIVFALEGTL--QKTRKFERNHPVIATDTAA 301 Query: 257 ----------VAFDAGMACVHVLFIRQGKVLGS--------------RSYFPKVPGGTEL 292 A + C + I V+ S R + K G + Sbjct: 302 MRALGEALGLPAPPRTLECFDISHISGTFVVASMVHFADGRPDKNNYRRFQIKSFIGNDD 361 Query: 293 SEVVETFVGQFYLQ-GSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQ 344 +E VG+ Y + + + P I++D + + + + Sbjct: 362 FRAMEEVVGRRYRRLREEGKPFPDLIVIDGGRGQIAAALKAFAIIDAPPPPLI 414 >UniRef50_Q7NKN5 Excinuclease ABC subunit C n=1 Tax=Gloeobacter violaceus RepID=Q7NKN5_GLOVI Length = 370 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 160/335 (47%), Gaps = 12/335 (3%) Query: 9 AFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQID 67 L+ + PGVYR D G ++Y+GK+ L+ R+ SY R SR+TE L + Q ++ Sbjct: 10 DRLEDLPDAPGVYRFVDCDGRLLYIGKSVHLRTRVRSYLRRDGGHSRQTERLKFEAQAVE 69 Query: 68 VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKG 126 V T +E ALLLE I+ Y P +N + + YPF+ LS + +PRL + R Sbjct: 70 VLCTGSELAALLLEGRLIREYLPPFNQAQKRYRQYPFLRLSVQEDYPRLHLTRVLAGDGA 129 Query: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186 EY+GP+ V LL +R C + + CL Q+G+CLGPC G + Sbjct: 130 EYYGPYSQARFVSWMADLLSASLGLRTCRD--FSAIYHGCLLDQLGKCLGPCRTGAL-VA 186 Query: 187 EYAQQVEYVRLFLSGKD--DQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQF 244 +Y ++VE +R L G+D ++ +M A+Q +FE+AAR RD+ QA+ Q Sbjct: 187 QYRERVERLRALLRGEDTGSGIIVDFERQMLNAAQREDFEQAARWRDRRQALANFVTHQG 246 Query: 245 VSNTGDDLDVIGVAFDAGMA--CVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 LD + V A + V + +IRQGK+ +S+ +P +E+ T G Sbjct: 247 HLRERVSLDAVAVYPGAPRSPTSVQLFWIRQGKLTLQQSFAGDLPQERLRAELAHTLAGH 306 Query: 303 FYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELA 337 + + P L +L + +++ L Sbjct: 307 Y---SEGLPPAPLFALPQQDLDEVQMVSGWLYRHR 338 >UniRef50_A4CG28 Excinuclease ABC, C subunit (Fragment) n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CG28_9GAMM Length = 256 Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 137/260 (52%), Gaps = 17/260 (6%) Query: 354 YLKLARTNA----ATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQT 408 + ++ N K +++ L L + L L ++ +ECFDIS+ G+ T Sbjct: 1 LVDMSLKNLLFFKKNLYNEKKERKTKKLSVLIDLKNKLNLKKIPFHIECFDISNIQGKNT 60 Query: 409 VASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDS-KIPDVILIDG 467 VAS V+F P + EYR+Y I + DD+ +M +V+ RRY + I + +PD+I+IDG Sbjct: 61 VASMVLFKDGYPNKKEYRKYKIRSVDKPDDFESMREVVSRRYTRIIREGNPLPDLIIIDG 120 Query: 468 GKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPAL 527 GKGQL+ A ++ EL V N ++G+AK LE ++F + L S L Sbjct: 121 GKGQLSSACDILKELKV---YNKINIIGIAKK------LEEIYFPNDSIPVLLGKKSEQL 171 Query: 528 HVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASV 587 +IQ+IR+E+H AI H++ R+ S LE I G+G K R L++ G ++ ++ A Sbjct: 172 KLIQNIRNEAHRFAINYHKQLRSNTFIQSELEEIYGIGDKTRGKLIRAFGSIENIKKADR 231 Query: 588 EEIAKVPGISQGLAEKIFWS 607 +++ K+ + + EKI Sbjct: 232 KDLIKL--VGKEKTEKIIRY 249 >UniRef50_D1B5F2 Excinuclease ABC, C subunit n=2 Tax=Synergistaceae RepID=D1B5F2_THEAS Length = 479 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 100/256 (39%), Positives = 144/256 (56%), Gaps = 7/256 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFR-SNLASRKTEAL 59 M+D+ K ++++ +PGVY M D G VIYVGKAK L++R+ SYFR N AS + L Sbjct: 1 MADEALMKH-VRSLPERPGVYIMRDRDGNVIYVGKAKALRRRVMSYFRHGNFASPRLRKL 59 Query: 60 VAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHR 119 V + I V T TE EAL+LE I+ +P +NV L+ + YP+I ++ + PR+ + R Sbjct: 60 VETVHDISVMRTATEAEALILEARLIRQLKPFFNVELKMSERYPYIRVTQERFPRVMVTR 119 Query: 120 GAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCLGPC 178 K G + GP+ +RE L LL + FP+R+C + RPC+ + IG+CL PC Sbjct: 120 VRKGE-GLFIGPYVKVRELRELLRLLDRFFPLRKCSFPIEPPYDRRPCIYHAIGKCLAPC 178 Query: 179 VEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS-QNLEFEEAARIRDQIQAVR 237 GL E Y + V + L G+ ++ +L RME A+ L FEEAA IRD I+A+ Sbjct: 179 A-GLCDEGTYRRMVAEAVMLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIW 237 Query: 238 RVTEKQFVSNTGDDLD 253 RV +Q D D Sbjct: 238 RV-GRQAPMAQVGDED 252 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 144/293 (49%), Gaps = 26/293 (8%) Query: 332 SLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQ-------------STVHQ 378 L + G + + K R + A Y +LA AA + Sbjct: 196 MLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIWRVGRQAPMAQVGDEDPLP 255 Query: 379 RLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGD 437 L AL LKLP++ R+E +DISH +G TV S VVF+ P +A YRRYNI G D Sbjct: 256 MLWALQERLKLPQLPWRIEGYDISHHLGSDTVGSRVVFEQGRPNKALYRRYNIEGTLG-D 314 Query: 438 DYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVA 497 D+ A+ QV+RRR+ + +P++ILIDGG+ QL A ++ V+ + +A Sbjct: 315 DFRALEQVMRRRFTGSGSGDLMPNLILIDGGRVQLEFALRALDDMGVN-----VPMASLA 369 Query: 498 KGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSS 557 KG E ++ + L AL ++Q +RDE+H A+ HR +R + + Sbjct: 370 KGE------EEIYLPGRVDPLRLDRSDGALRMLQMVRDEAHRFAVSSHRDRRGRRMRRTR 423 Query: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 610 LE I GVG + LL G ++ + +AS++E+A + GI + LA++I LK Sbjct: 424 LEDIPGVGKAKASQLLSRFGSVRNVASASLDELASMRGIGERLAKRISDHLKE 476 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 92/277 (33%), Positives = 143/277 (51%), Gaps = 6/277 (2%) Query: 8 KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYF-RSNLASRKTEALVAQIQQI 66 + L PGVY M DA G V+YVGKA++L++R+ SYF + +RK + L+ + +I Sbjct: 283 QRLLADTPELPGVYLMRDALGRVLYVGKARNLRQRVRSYFSQPLGYTRKMDGLLESVAEI 342 Query: 67 DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAK 125 + VT +E EALLLE +++ Y+P YN LR+ ++YP++ + G PRL + R Sbjct: 343 ETVVTGSELEALLLESQFVQRYKPPYNTQLRNHEAYPYVKVELGRPWPRLMLARQRDDDD 402 Query: 126 GEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR--SRPCLQYQIGRCLGPCVEGLV 183 Y GPF + A R + LL ++ P+R C S R RPCLQ +GRC+GPC G V Sbjct: 403 AVYVGPFRSTAAARSVVELLHQLLPLRTCHRSFRDARSYGRPCLQLTLGRCIGPCT-GCV 461 Query: 184 SEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQ 243 + +EY V+ +LSG+ V+ + + A + L+FE AAR+RD ++ + Sbjct: 462 TPDEYRALVDCALRYLSGETSVVVERAQQLLADAVERLDFERAARLRDLLRRSEELVFSH 521 Query: 244 FVSNTGDD-LDVIGVAFDAGMACVHVLFIRQGKVLGS 279 + + V L I G++ Sbjct: 522 RLVRQTISGRPCVIVTPCPETGDRAFLLIVAGRLWAR 558 >UniRef50_C5RNQ3 Excinuclease ABC C subunit domain protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNQ3_CLOCL Length = 364 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 160/339 (47%), Gaps = 12/339 (3%) Query: 5 FDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNL-ASRKTEALVAQI 63 + K +K + S PGVY M D+ +IY+GK+K+LK R+SSYF+++ S K LV + Sbjct: 1 MNLKEKIKGLPSVPGVYLMKDSLENIIYIGKSKNLKNRVSSYFQNSKNHSSKVIRLVQNL 60 Query: 64 QQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAM-HRGA 121 + D +T TE EA +LE IK +P YN L++ SY +I ++ GD +++ Sbjct: 61 KDFDYIITDTEFEAFILECKLIKEIKPPYNRLMKSPMSYSYIQVALGDNCLDISLKSEAV 120 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEG 181 K YFGP+ + V + ++ I C N+ + C+ Y + C+G C+ Sbjct: 121 KDDNCIYFGPYTSRNIVERGILGIKNHLKI-ACTNN--SRKGSACINYSLKLCMGMCM-N 176 Query: 182 LVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT- 240 VS+ +Y + + L+G D ++ ++ M A+++ +FE AA+ RD I ++ + Sbjct: 177 KVSQNQYIEIYNKILQLLNGSDKSIIEEMNLVMNNAAESFDFETAAKYRDYISSINYILD 236 Query: 241 EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFV 300 +K V + + I + + I+ +++ S + EL ++ + Sbjct: 237 KKNTVEFMNKNRN-IAFIEYLDDSFAKIFLIKGNRIVFSEKFNLNHCHSYELKATIKNNI 295 Query: 301 GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGR 339 ++ + ++ P EI NL + ++ + Sbjct: 296 LFYFKE--ELLQEPWEIN-KENLDEAQIIHSYIKTKGDS 331 >UniRef50_A7BFX2 Excinuclease ABC subunit C (Fragment) n=1 Tax=Pseudomonas syringae pv. tabaci RepID=A7BFX2_PSESZ Length = 274 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 104/287 (36%), Positives = 153/287 (53%), Gaps = 26/287 (9%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60 M+ FD F + V P ++YVG+ + + L + F + E Sbjct: 1 MTQTFDPVHFSRPVAVVPASTVCSTPKLKLLYVGRPRTSRSVLPAIFAKPDTRPRPERWC 60 Query: 61 AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNV-----------LLRDDKSYPFIFLSG 109 + L KL + +N +RDDKSYP++FLS Sbjct: 61 RASPR------------LKRPSRATKLKRCCWNRPSQGVAAALQHFVRDDKSYPYVFLSD 108 Query: 110 DTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQY 169 +PRL++HRG K AKG YFGP+P+ A+RE+L+LLQK F +RQCE+S ++NR+RPCLQY Sbjct: 109 GNYPRLSIHRGTKKAKGRYFGPYPSAGAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQY 168 Query: 170 QIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARI 229 QI RC GPCV GLV E YA+ V + +FL G+ + + +L + ME A+ L+FE AA + Sbjct: 169 QIKRCKGPCV-GLVEPEVYAEDVRHSVMFLEGRSNALSDELNASMEKAAMALDFERAAEL 227 Query: 230 RDQIQAV-RRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGK 275 RD + V ++Q + D+DV+ + G ACVH++ R G+ Sbjct: 228 RDTGRLVATAYQDQQSMDGGTGDVDVVAAFVNPGGACVHLIQ-RAGR 273 >UniRef50_A7BXI2 UvrABC system protein C n=1 Tax=Beggiatoa sp. PS RepID=A7BXI2_9GAMM Length = 277 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 125/254 (49%), Positives = 158/254 (62%), Gaps = 38/254 (14%) Query: 390 PEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRR 449 +R+ECFDISHT GE TVASCVVFD GP +EYRR+NI ITPGDDYAAM Q L RR Sbjct: 23 ETPQRLECFDISHTQGEATVASCVVFDTEGPRNSEYRRFNIENITPGDDYAAMQQALNRR 82 Query: 450 Y---------GKAIDD--------------SKIPDVILIDGGKGQLAQAKNVFAELDVSW 486 Y + I + + +PD++L+DGG GQ+ AK V +L ++ Sbjct: 83 YQGNRWKGTGEREIREIGEQALDSMPQQAQNLLPDILLVDGGIGQVNVAKTVLNKLQLT- 141 Query: 487 DKNHPLLLGVAKGADRKAGLETLFFEPEGE-----------GFSLPPDSPALHVIQHIRD 535 H ++GVAKG RK GLETL + F+LP DSPALH+IQ IRD Sbjct: 142 ---HIRIIGVAKGPGRKPGLETLILSEDETCFPASGSSSPVSFTLPKDSPALHLIQQIRD 198 Query: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595 E+H AI GHRK+RAK ++TS LE I+G+G KRRQ LL Y GGLQG+ A VE++A VPG Sbjct: 199 EAHRFAIVGHRKRRAKARHTSILEEIDGIGLKRRQRLLSYFGGLQGVSRAGVEDLATVPG 258 Query: 596 ISQGLAEKIFWSLK 609 I + LA+KI+ + Sbjct: 259 IERPLAQKIYDFFQ 272 >UniRef50_B2KBS4 Excinuclease ABC C subunit domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBS4_ELUMP Length = 437 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 110/394 (27%), Positives = 187/394 (47%), Gaps = 39/394 (9%) Query: 14 VTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRK---TEALVAQIQQIDVTV 70 + PGVY M G V+Y+GKAK+L R+ YF + + +L+ + +ID V Sbjct: 8 LPKSPGVYIMRSGLGEVLYIGKAKNLAARVRQYFLESNLHSRGWLLPSLLPLVAKIDYIV 67 Query: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFG 130 +E +AL+LE IK Y+P +N +DDKSYP+I +S + PR + R K GEY+G Sbjct: 68 AASERDALVLESRLIKKYKPFFNTDGKDDKSYPYIKISDEDFPRGLLTRNKKGP-GEYYG 126 Query: 131 PFPNGYAVRETLALLQK--IFPIRQCE------NSVYRNRSRPCLQYQIGRCLGPCVEGL 182 P PN +A++ L L P+R C+ + + R C+ + G+C PC G Sbjct: 127 PHPNAFAIKSLLRFLWTSGFAPLRPCKWNFSLSKPLDERKIRTCVYFHTGQCPAPCA-GK 185 Query: 183 VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEK 242 +S ++Y + V+ R F G ++ L M+ AS+N+++E AAR RD + + R++E+ Sbjct: 186 ISYKDYQKIVQRFRDFAEGNFGKMKHGLAKAMKMASKNMDYESAARYRDFLNTLERMSER 245 Query: 243 QFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQ 302 VS D+ + + + + R G+VLG F KVP E + G+ Sbjct: 246 ILVSEYKDEKILSAIDASSKVK-------RLGEVLG----FAKVPRHIETFDT-SGLYGR 293 Query: 303 F-------YLQG----SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDR 351 + Y+ G + R + +L +D L+ ++E+ GR++ K G Sbjct: 294 YAVGSMVCYIDGKKHHAHYRRFKIKSVLPGTGNDDFLM---MTEIVGRRLAALKKAGGAL 350 Query: 352 ARYLKLARTNAATALTSKLSQQSTVHQRLTALAS 385 + + + +Q++ V + +LA Sbjct: 351 PDLMVIDGGKGQLGMAEAAAQRAGVKMKFISLAK 384 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 16/197 (8%) Query: 364 TALTSKLSQQSTVHQRLTALASVLKLPEVKR-MECFDISHTMGEQTVASCVVFDANGPLR 422 K+ ++ L VL +V R +E FD S G V S V + Sbjct: 250 EYKDEKILSAIDASSKVKRLGEVLGFAKVPRHIETFDTSGLYGRYAVGSMVCYIDGKKHH 309 Query: 423 AEYRRYNITGI---TPGDDYAAMNQVLRRRYGKAID-DSKIPDVILIDGGKGQLAQAKNV 478 A YRR+ I + T DD+ M +++ RR +PD+++IDGGKGQL A+ Sbjct: 310 AHYRRFKIKSVLPGTGNDDFLMMTEIVGRRLAALKKAGGALPDLMVIDGGKGQLGMAEAA 369 Query: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538 V + +AK E +F E LP PAL+++ +RDE H Sbjct: 370 AQRAGVKMK-----FISLAKRE------EEIFVTGRSESIKLPIGDPALNLLMEMRDEVH 418 Query: 539 DHAIGGHRKKRAKVKNT 555 I HR R K Sbjct: 419 RFGITYHRHLRDKNLLE 435 >UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Actinomycetales RepID=A4X9Y0_SALTO Length = 607 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 5/280 (1%) Query: 2 SDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVA 61 Q + + + PGVY A +YVG + D+ R+ SYF + + ++A Sbjct: 240 PTQRRKRHLAEGLPHSPGVYLFRGADNRPLYVGTSIDIATRVRSYFTAAEKRARISEMLA 299 Query: 62 QIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGA 121 ++++ EA + E I + P YN + + ++ L+ + +PRL++ R Sbjct: 300 AAERVEAVECAHSLEAEVRELRLIGTHAPPYNRRSKFPERVVWLKLTDEAYPRLSVVRNL 359 Query: 122 KHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRP-CLQYQIGRCLGPCVE 180 Y GPF + A A P+RQC + + + P C ++GRC PC E Sbjct: 360 APGDEAYLGPFTSRRAAELAAAGFHDAMPLRQCTHRLSVRKVTPACAVAELGRCPAPC-E 418 Query: 181 GLVSEEEYAQQVEYVRLFLSGKD-DQVLTQLISRMETASQNLEFEEAARIRDQIQA-VRR 238 ++ EYA + G D V+ L+ R+ET S +EEAA +R ++ A +R Sbjct: 419 HRITPTEYADRATTPFRRACGDDPQGVVDALLGRIETLSAGQRYEEAAVVRSRLTAVLRA 478 Query: 239 VTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLG 278 +T Q ++ +V+ + + +R G++ G Sbjct: 479 ITRMQRLAALTGIAEVVAARPASDGGW-ELALVRHGRLAG 517 >UniRef50_B9XGZ6 Excinuclease ABC C subunit domain protein n=2 Tax=Verrucomicrobiales RepID=B9XGZ6_9BACT Length = 559 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 6/247 (2%) Query: 1 MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLA---SRKTE 57 M+ ++ L + +PG+Y M D GTVIYVGKA+DL+KR+S YF + K + Sbjct: 1 MAVSALIRSKLNELPHKPGIYLMKDRFGTVIYVGKARDLRKRVSQYFHPSRKMGWDLKFK 60 Query: 58 ALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLA 116 AL I +DV V +E EALLLE IK + PRYN+ +DDK + + ++ D PR Sbjct: 61 ALTEAIYDLDVHVVRSEPEALLLEGKLIKEFHPRYNISFKDDKRFLMLKVNLNDPIPRFT 120 Query: 117 MHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRS-RPCLQYQIGRCL 175 + R + YFGPF + A++ TL ++++ F +R C R + CL + C Sbjct: 121 LTRFKQDDGARYFGPFAHSSALKNTLTMIRRQFHLRGCRPLTPNERDYKHCLYGNLKHCT 180 Query: 176 GPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQA 235 PC+ G V+ E+Y QV+ FLSG+ +++ QL M+ A+ ++E AA +RD I Sbjct: 181 APCI-GNVTREQYLAQVQAACDFLSGQGEEMQEQLAEEMKKAAAAQDYERAAMLRDAISD 239 Query: 236 VRRVTEK 242 +R+ T+K Sbjct: 240 LRQTTKK 246 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 56/326 (17%) Query: 330 ADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQS---------TVHQRL 380 + +LA +RA L+ A ++ + + + L Sbjct: 208 EEMQEQLAEEMKKAAAAQDYERAAMLRDAISDLRQTTKKTVKFERLPYNLPLAIEPQRDL 267 Query: 381 TALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDY 439 L VL L R+E FDIS+ G V+S V F P R+ YR++ + + +D+ Sbjct: 268 AELGQVLDLAGPPMRIEGFDISNISGTFAVSSLVSFKNGRPDRSNYRKFKMKSVVGQNDF 327 Query: 440 AAMNQVLRRRYGKAIDDSK------------------------------------IPDVI 463 A M + +RRRY + + + K +PD+I Sbjct: 328 ACMAETIRRRYSRLLREGKEARKAMEAASANAVPQPSENASEVQPALPGSPLPSNLPDLI 387 Query: 464 LIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 523 LIDGGKGQL A +L +S ++G+AK E ++ + E L Sbjct: 388 LIDGGKGQLNAACEELEKLGLS----QIPIIGLAKE------FEEIYRPGQSEPLRLSHA 437 Query: 524 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLR 583 S AL ++Q +RDESH A + + R K + S L+ +G +R+ LLK G +Q LR Sbjct: 438 SGALKLLQRVRDESHRLANTYNAELRLKKISESILDEFPNIGQRRKADLLKKFGSVQRLR 497 Query: 584 NASVEEIAKVPGISQGLAEKIFWSLK 609 A+VE+IA+VPG +A + L+ Sbjct: 498 IATVEQIAEVPGFGGKMAADLKAFLE 523 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.146 0.431 Lambda K H 0.267 0.0448 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,098,746,938 Number of Sequences: 3077464 Number of extensions: 198584255 Number of successful extensions: 581249 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1691 Number of HSP's successfully gapped in prelim test: 785 Number of HSP's that attempted gapping in prelim test: 570638 Number of HSP's gapped (non-prelim): 3918 length of query: 610 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 475 effective length of database: 624,938,716 effective search space: 296845890100 effective search space used: 296845890100 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 96 (41.5 bits)