BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (235 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P32694 Uncharacterized protein yjbM n=62 Tax=Enterobact... 485 e-136 UniRef50_B1LPL2 Conserved domain protein n=2 Tax=Escherichia col... 189 6e-47 >UniRef50_P32694 Uncharacterized protein yjbM n=62 Tax=Enterobacteriaceae RepID=YJBM_ECOLI Length = 235 Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 1 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN 60 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN Sbjct: 1 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN 60 Query: 61 DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS 120 DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS Sbjct: 61 DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS 120 Query: 121 AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV 180 AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV Sbjct: 121 AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV 180 Query: 181 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK 235 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK Sbjct: 181 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK 235 >UniRef50_B1LPL2 Conserved domain protein n=2 Tax=Escherichia coli RepID=B1LPL2_ECOSM Length = 334 Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 106/250 (42%), Positives = 147/250 (58%), Gaps = 16/250 (6%) Query: 2 WVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKND 61 WV + ID CT+E L DRD+I++ VDRAIFH+A+N +CNP +N D I++CTFDV N Sbjct: 85 WVEECIDQCTNEQLGDRDYISAFVDRAIFHYAMNFVCNPMENSDVTLIDKCTFDVINHNG 144 Query: 62 LPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSSA 121 LPST+QLFY++S P+A++H + + GFL NA D LK ASLL+S SY SA Sbjct: 145 LPSTIQLFYDKSYCKAPVASLHLKTVSEGFLNLENAYNVKKDTRLKPLASLLLSFSYDSA 204 Query: 122 YAD-LSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV 180 AD + +N++ E+Y+K+Q + LS++ MKK L E+K L D E++F+ L +M + Sbjct: 205 SADIIGAAERVNDDCENYIKSQIKILSRQVMKKNLAELKDLIDKKELDFNVILQEMKNQA 264 Query: 181 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTS---------------KLI 225 E D ++KM+ A LI F +SFDP S I I D K I Sbjct: 265 GEEKEDIKNITKMQAAGETLIKFIQSFDPDSTGPIIIGKDMDDKNINDNDLINEDIIKFI 324 Query: 226 YDLFGVKSEK 235 Y L G + EK Sbjct: 325 YVLLGTELEK 334 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P32694 Uncharacterized protein yjbM n=62 Tax=Enterobact... 368 e-101 UniRef50_B1LPL2 Conserved domain protein n=2 Tax=Escherichia col... 350 3e-95 Sequences not found previously or not previously below threshold: UniRef50_Q1Q988 Ig-like, group 1 n=1 Tax=Psychrobacter cryohalol... 43 0.006 CONVERGED! >UniRef50_P32694 Uncharacterized protein yjbM n=62 Tax=Enterobacteriaceae RepID=YJBM_ECOLI Length = 235 Score = 368 bits (945), Expect = e-101, Method: Composition-based stats. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 1 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN 60 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN Sbjct: 1 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN 60 Query: 61 DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS 120 DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS Sbjct: 61 DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS 120 Query: 121 AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV 180 AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV Sbjct: 121 AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV 180 Query: 181 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK 235 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK Sbjct: 181 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK 235 >UniRef50_B1LPL2 Conserved domain protein n=2 Tax=Escherichia coli RepID=B1LPL2_ECOSM Length = 334 Score = 350 bits (897), Expect = 3e-95, Method: Composition-based stats. Identities = 106/250 (42%), Positives = 147/250 (58%), Gaps = 16/250 (6%) Query: 2 WVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKND 61 WV + ID CT+E L DRD+I++ VDRAIFH+A+N +CNP +N D I++CTFDV N Sbjct: 85 WVEECIDQCTNEQLGDRDYISAFVDRAIFHYAMNFVCNPMENSDVTLIDKCTFDVINHNG 144 Query: 62 LPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSSA 121 LPST+QLFY++S P+A++H + + GFL NA D LK ASLL+S SY SA Sbjct: 145 LPSTIQLFYDKSYCKAPVASLHLKTVSEGFLNLENAYNVKKDTRLKPLASLLLSFSYDSA 204 Query: 122 YAD-LSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV 180 AD + +N++ E+Y+K+Q + LS++ MKK L E+K L D E++F+ L +M + Sbjct: 205 SADIIGAAERVNDDCENYIKSQIKILSRQVMKKNLAELKDLIDKKELDFNVILQEMKNQA 264 Query: 181 NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTS---------------KLI 225 E D ++KM+ A LI F +SFDP S I I D K I Sbjct: 265 GEEKEDIKNITKMQAAGETLIKFIQSFDPDSTGPIIIGKDMDDKNINDNDLINEDIIKFI 324 Query: 226 YDLFGVKSEK 235 Y L G + EK Sbjct: 325 YVLLGTELEK 334 >UniRef50_Q1Q988 Ig-like, group 1 n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q988_PSYCK Length = 667 Score = 43.5 bits (101), Expect = 0.006, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 2/140 (1%) Query: 78 PLANIHFQA-IGSGFLTFVNACQEHDDNS-LKLFASLLISLSYSSAYADLSETVYINENN 135 P+AN S F++F A + D+S + F IS+ S+ +++ V IN N Sbjct: 460 PIANSSITVQTKSTFISFAFADKVSTDSSEIYYFRKGSISVLNSTGKPAINQQVTINLNP 519 Query: 136 ESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLVNEGTLDPDILSKMRD 195 ++YLK FE ++ K G + ++N +G LD+ G LDP ++ + Sbjct: 520 DTYLKGFFEIINDISGNKSWGRNDVTCENEDLNNNGILDEGEDTNGNGRLDPINVAAVLL 579 Query: 196 AAPQLISFAKSFDPTSKEEI 215 Q + ++F + + Sbjct: 580 EGGQEVEPNQNFTTDNTGRV 599 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.319 0.139 0.379 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 903,618,119 Number of Sequences: 3077464 Number of extensions: 36136709 Number of successful extensions: 105686 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 105678 Number of HSP's gapped (non-prelim): 10 length of query: 235 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 110 effective length of database: 655,713,356 effective search space: 72128469160 effective search space used: 72128469160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.6 bits)