BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (284 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77379 Uncharacterized HTH-type transcriptional regulat... 585 e-166 UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=C... 156 6e-37 UniRef50_Q21EK5 Histidine kinase n=2 Tax=Saccharophagus degradan... 147 3e-34 UniRef50_B2TGP8 Transcriptional regulator, AraC family n=13 Tax=... 140 6e-32 UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterob... 138 2e-31 UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Pr... 132 1e-29 UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronoba... 132 1e-29 UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C... 132 2e-29 UniRef50_O31249 Transcriptional regulator (XylS/AraC family) n=5... 129 1e-28 UniRef50_C6AQ53 MtrA n=4 Tax=Pasteurellaceae RepID=C6AQ53_AGGAN 125 2e-27 UniRef50_B7V4F0 Probable transcriptional regulator n=7 Tax=Pseud... 124 3e-27 UniRef50_A4JQL6 Transcriptional regulator, AraC family n=6 Tax=B... 124 5e-27 UniRef50_B2HZJ1 AraC-type DNA-binding domain-containing protein ... 122 2e-26 UniRef50_A0NP67 Phosphoribosylaminoimidazole carboxylase, ATPase... 121 2e-26 UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=R... 121 3e-26 UniRef50_Q2KWV1 AraC-family transcriptional regulator n=1 Tax=Bo... 121 4e-26 UniRef50_P45008 Uncharacterized HTH-type transcriptional regulat... 120 5e-26 UniRef50_Q485B0 Transcriptional regulator, araC family n=1 Tax=C... 119 2e-25 UniRef50_D1BRX4 Transcriptional regulator, AraC family n=1 Tax=X... 118 3e-25 UniRef50_A6GC16 Phosphoribosylaminoimidazole carboxylase, ATPase... 118 3e-25 UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein ... 116 7e-25 UniRef50_A9DAF9 Transcriptional regulator, AraC family protein n... 116 8e-25 UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Pr... 116 9e-25 UniRef50_C9R1V8 MtrA n=1 Tax=Aggregatibacter actinomycetemcomita... 116 1e-24 UniRef50_D1V7I4 Transcriptional regulator, AraC family n=2 Tax=A... 115 1e-24 UniRef50_B1JWG2 Transcriptional regulator, AraC family n=13 Tax=... 114 3e-24 UniRef50_UPI0001AEBE6B AraC family transcriptional regulator n=1... 113 6e-24 UniRef50_A9M194 AraC-family transcriptional regulator n=29 Tax=N... 113 7e-24 UniRef50_B1G656 Transcriptional regulator, AraC family n=1 Tax=B... 112 1e-23 UniRef50_C0DSD5 Putative uncharacterized protein n=1 Tax=Eikenel... 112 1e-23 UniRef50_C7Q710 Transcriptional regulator, AraC family n=1 Tax=C... 112 1e-23 UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=C... 112 1e-23 UniRef50_B5JV28 Transcriptional regulator n=1 Tax=gamma proteoba... 110 7e-23 UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=C... 110 7e-23 UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingell... 109 8e-23 UniRef50_A4F0L2 Transcriptional regulator, AraC family protein n... 108 2e-22 UniRef50_A2SEH8 Transcriptional regulator, AraC family n=1 Tax=M... 108 2e-22 UniRef50_A7JVV0 Possible AraC family transcriptional regulator n... 108 3e-22 UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n... 107 3e-22 UniRef50_B9XHR2 Transcriptional regulator, AraC family n=1 Tax=b... 107 3e-22 UniRef50_C5CL63 Transcriptional regulator, AraC family n=1 Tax=V... 107 6e-22 UniRef50_A0KNU2 Transcriptional regulator, AraC family n=1 Tax=A... 107 7e-22 UniRef50_A6UH43 Helix-turn-helix-domain containing protein AraC ... 107 7e-22 UniRef50_A0L3B8 Transcriptional regulator, AraC family n=2 Tax=G... 105 1e-21 UniRef50_UPI0001C310C0 transcriptional regulator, AraC family n=... 105 2e-21 UniRef50_A8LC22 Transcriptional regulator, AraC family n=3 Tax=A... 104 3e-21 UniRef50_A8L3A5 Transcriptional regulator, AraC family n=1 Tax=F... 104 3e-21 UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=K... 104 4e-21 UniRef50_B9JLR2 Transcriptional regulator protein n=2 Tax=Rhizob... 103 5e-21 UniRef50_A4XUD0 Transcriptional regulator, AraC family n=1 Tax=P... 103 6e-21 UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacter... 103 7e-21 UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=R... 103 8e-21 UniRef50_A8M1A6 Transcriptional regulator, AraC family n=1 Tax=S... 102 1e-20 UniRef50_Q21H00 Transcriptional regulator, AraC family n=1 Tax=S... 102 1e-20 UniRef50_Q09DL8 Transcriptional regulator, AraC family protein n... 102 1e-20 UniRef50_A7NLR2 Transcriptional regulator, AraC family n=2 Tax=C... 102 2e-20 UniRef50_C5V7T6 Transcriptional regulator, AraC family n=1 Tax=G... 102 2e-20 UniRef50_B2TAQ8 Transcriptional regulator, AraC family n=6 Tax=P... 101 3e-20 UniRef50_A1TZC9 Transcriptional regulator, AraC family n=1 Tax=M... 101 3e-20 UniRef50_C8PYQ8 Transcriptional regulator, AraC family n=1 Tax=E... 100 5e-20 UniRef50_B1M4B9 Transcriptional regulator, AraC family n=1 Tax=M... 100 5e-20 UniRef50_B6A116 Transcriptional regulator, AraC family n=5 Tax=R... 100 6e-20 UniRef50_A8LA37 Transcriptional regulator, AraC family n=1 Tax=F... 100 6e-20 UniRef50_C6WLA0 Transcriptional regulator, AraC family n=1 Tax=A... 100 6e-20 UniRef50_B1MI41 Putative transcriptional regulator, AraC family ... 100 8e-20 UniRef50_C5CZF0 Transcriptional regulator, AraC family n=1 Tax=V... 99 1e-19 UniRef50_Q01Y24 Transcriptional regulator, AraC family n=2 Tax=A... 99 1e-19 UniRef50_C7Q7L5 Transcriptional regulator, AraC family n=1 Tax=C... 99 2e-19 UniRef50_C7PXM7 Transcriptional regulator, AraC family n=1 Tax=C... 99 2e-19 UniRef50_B1KKM5 Transcriptional regulator, AraC family n=1 Tax=S... 99 2e-19 UniRef50_C5BRT4 Helix-turn-helix-domain containing protein, AraC... 99 2e-19 UniRef50_Q2BP83 AraC-type DNA-binding domain-containing protein ... 98 4e-19 UniRef50_Q15UL8 Transcriptional regulator, AraC family n=1 Tax=P... 97 5e-19 UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=B... 97 6e-19 UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type... 97 7e-19 UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=c... 96 9e-19 UniRef50_A7HC12 Helix-turn-helix-domain containing protein AraC ... 96 1e-18 UniRef50_Q7MC25 AraC-type DNA-binding domain-containing protein ... 96 1e-18 UniRef50_A7JV94 Possible AraC family transcriptional regulator n... 96 1e-18 UniRef50_UPI0001B53B77 AraC family transcriptional regulator n=1... 96 1e-18 UniRef50_Q488F1 Transcriptional regulator, AraC family n=2 Tax=G... 96 1e-18 UniRef50_D2BAU8 AraC family transcriptional regulator n=1 Tax=St... 96 2e-18 UniRef50_B8ESK8 Transcriptional regulator, AraC family n=8 Tax=P... 95 2e-18 UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=D... 95 2e-18 UniRef50_C6XBB1 Transcriptional regulator, AraC family n=1 Tax=M... 94 5e-18 UniRef50_A9WHL1 Helix-turn-helix-domain containing protein AraC ... 94 5e-18 UniRef50_A3Y9X7 Transcriptional regulator, araC family protein n... 94 7e-18 UniRef50_B4VBF5 Transcriptional regulator n=4 Tax=Actinomycetale... 93 8e-18 UniRef50_Q21T04 Transcriptional regulator, AraC family n=1 Tax=R... 93 9e-18 UniRef50_B8CRW0 Transcriptional regulator, AraC family n=1 Tax=S... 93 1e-17 UniRef50_Q0AK28 Transcriptional regulator, AraC family n=1 Tax=M... 93 1e-17 UniRef50_B1K331 Transcriptional regulator, AraC family n=12 Tax=... 93 1e-17 UniRef50_Q39MN2 Transcriptional regulator, AraC family n=1 Tax=B... 92 1e-17 UniRef50_B5ZZ22 Transcriptional regulator, AraC family n=5 Tax=R... 92 2e-17 UniRef50_C1RHR4 DNA-binding domain-containing protein, AraC-type... 92 2e-17 UniRef50_D2S4Y3 Transcriptional regulator, AraC family n=2 Tax=A... 92 2e-17 UniRef50_Q39N64 Transcriptional regulator, AraC family n=11 Tax=... 92 2e-17 UniRef50_A0Z8C5 Transcriptional regulator, araC family protein n... 92 3e-17 UniRef50_Q88IN9 Transcriptional regulator, AraC family n=4 Tax=P... 91 3e-17 UniRef50_B2IIY8 Transcriptional regulator, AraC family n=3 Tax=B... 91 3e-17 UniRef50_B6A5N0 Transcriptional regulator, AraC family n=1 Tax=R... 91 3e-17 UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-typ... 91 4e-17 UniRef50_B2T994 Transcriptional regulator, AraC family n=1 Tax=B... 91 4e-17 UniRef50_Q7UL84 Probable araC family transcription regulator n=1... 91 5e-17 UniRef50_A9GK43 Transcriptional regulator, AraC family n=1 Tax=S... 91 6e-17 UniRef50_B0U5T8 Transcriptional regulator AraC family n=12 Tax=P... 91 6e-17 UniRef50_B1KNX2 Transcriptional regulator, AraC family n=1 Tax=S... 90 8e-17 UniRef50_A7HS46 Helix-turn-helix-domain containing protein AraC ... 90 9e-17 UniRef50_A6VY86 Helix-turn-helix-domain containing protein AraC ... 90 1e-16 UniRef50_A0NP18 AraC-type DNA-binding domain-containing protein ... 89 2e-16 UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=P... 89 2e-16 UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=P... 89 2e-16 UniRef50_D2PNB5 Transcriptional regulator, AraC family n=1 Tax=K... 88 3e-16 UniRef50_A4Z2A2 Putative transcriptional regulator, AraC/XylS fa... 88 3e-16 UniRef50_D2PPT2 Transcriptional regulator, AraC family n=2 Tax=A... 88 3e-16 UniRef50_Q0HZJ9 Transcriptional regulator, AraC family n=13 Tax=... 88 3e-16 UniRef50_A6G0H9 Transcriptional regulator, AraC family protein n... 88 4e-16 UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=B... 88 4e-16 UniRef50_Q392E1 Transcriptional regulator, AraC family n=32 Tax=... 88 4e-16 UniRef50_C1ACW1 AraC family transcriptional regulator n=1 Tax=Ge... 88 4e-16 UniRef50_Q0S0T6 Transcriptional regulator n=1 Tax=Rhodococcus jo... 87 5e-16 UniRef50_A7HFH7 Helix-turn-helix-domain containing protein AraC ... 87 6e-16 UniRef50_Q07PU3 Transcriptional regulator, AraC family n=1 Tax=R... 87 7e-16 UniRef50_C1YFP1 DNA-binding domain-containing protein, AraC-type... 87 8e-16 UniRef50_B5WHE2 Transcriptional regulator, AraC family n=1 Tax=B... 87 9e-16 UniRef50_A6VZ04 Helix-turn-helix-domain containing protein AraC ... 86 1e-15 UniRef50_B0RCB3 Putative AraC-family transcriptional regulator n... 86 1e-15 UniRef50_A6SWJ9 Transcriptional regulator, AraC family n=1 Tax=J... 85 3e-15 UniRef50_D2PPT5 Transcriptional regulator, AraC family n=1 Tax=K... 85 3e-15 UniRef50_B3PSX8 Probable transcriptional regulator protein, AraC... 85 3e-15 UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC ... 85 3e-15 UniRef50_A0KDP5 Transcriptional regulator, AraC family n=11 Tax=... 84 4e-15 UniRef50_C8QBD0 Transcriptional regulator, AraC family n=1 Tax=P... 84 5e-15 UniRef50_C3JUH7 Transcriptional regulator, AraC family n=3 Tax=N... 84 5e-15 UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=B... 84 5e-15 UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=K... 84 5e-15 UniRef50_C8NCJ5 AraC family transcriptional regulator n=1 Tax=Ca... 84 6e-15 UniRef50_B4E7R7 AraC family regulatory protein n=8 Tax=Burkholde... 84 6e-15 UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=M... 84 7e-15 UniRef50_D0C8I5 Transcriptional regulator n=2 Tax=Acinetobacter ... 84 8e-15 UniRef50_B0SFV6 Transcriptional regulator, AraC-related n=2 Tax=... 83 1e-14 UniRef50_A8ZMX0 Transcriptional regulator, AraC family n=1 Tax=A... 83 1e-14 UniRef50_A1T3N4 Transcriptional regulator, AraC family n=1 Tax=M... 83 1e-14 UniRef50_Q1MGU4 Putative AraC family transcriptional regulator n... 82 2e-14 UniRef50_A1SPZ5 Transcriptional regulator, AraC family n=1 Tax=N... 82 3e-14 UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regul... 81 3e-14 UniRef50_C7PWW7 Transcriptional regulator, AraC family n=13 Tax=... 81 3e-14 UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=... 81 3e-14 UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=A... 81 4e-14 UniRef50_A6SWK7 Transcriptional regulator, AraC family n=3 Tax=B... 81 4e-14 UniRef50_C6WK58 Transcriptional regulator, AraC family n=3 Tax=A... 81 5e-14 UniRef50_Q15XK9 Transcriptional regulator, AraC family n=1 Tax=P... 81 5e-14 UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=B... 81 5e-14 UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=... 80 6e-14 UniRef50_B1M711 Transcriptional regulator, AraC family n=4 Tax=R... 80 7e-14 UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=A... 80 7e-14 UniRef50_A4W931 Transcriptional regulator, AraC family n=2 Tax=E... 80 8e-14 UniRef50_A6T1U9 Transcriptional regulator, AraC family n=2 Tax=P... 80 9e-14 UniRef50_Q13NB1 Transcriptional regulator, AraC family n=6 Tax=B... 80 1e-13 UniRef50_A9CLM3 Transcriptional regulator, AraC family n=2 Tax=A... 79 1e-13 UniRef50_Q3BT36 Transcriptional regulator, AraC family n=3 Tax=G... 79 1e-13 UniRef50_Q0K088 Transcriptional regulator (Transcriptional regul... 79 1e-13 UniRef50_A3ZY19 Probable transcriptional regulator n=1 Tax=Blast... 79 2e-13 UniRef50_B1FJH3 Transcriptional regulator, AraC family n=1 Tax=B... 79 2e-13 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 79 2e-13 UniRef50_Q47YP7 Transcriptional regulator, araC family n=1 Tax=C... 79 2e-13 UniRef50_A3Y511 Transcriptional regulator AraC family protein n=... 78 3e-13 UniRef50_A9AD06 AraC family transcriptional regulator n=5 Tax=Bu... 78 3e-13 UniRef50_C5D1X9 Transcriptional regulator, AraC family n=1 Tax=V... 78 4e-13 UniRef50_C5CWM4 Transcriptional regulator, AraC family n=1 Tax=V... 78 4e-13 UniRef50_D1BJS6 DNA-binding domain-containing protein, AraC-type... 78 4e-13 UniRef50_B6YYF5 Transcriptional regulator, AraC family n=1 Tax=P... 78 4e-13 UniRef50_C1F8R2 Transcriptional regulator, AraC family n=1 Tax=A... 78 4e-13 UniRef50_A5V6I7 Transcriptional regulator, AraC family n=1 Tax=S... 77 5e-13 UniRef50_B5Y1B2 Transcriptional regulator, AraC family n=1 Tax=K... 77 5e-13 UniRef50_A9GPX5 Probable transcriptional regulator n=1 Tax=Soran... 77 5e-13 UniRef50_A3I6W7 YbbB n=2 Tax=Bacillaceae RepID=A3I6W7_9BACI 77 5e-13 UniRef50_A1R3X3 Transcriptional regulator, AraC family domain n=... 77 6e-13 UniRef50_A9FWP2 Transcriptional regulator, AraC family n=1 Tax=S... 77 7e-13 UniRef50_B9QZW4 Transcriptional regulator, AraC family protein n... 77 1e-12 UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase... 76 1e-12 UniRef50_D0L3G6 Helix-turn-helix-domain containing protein AraC ... 76 1e-12 UniRef50_A9C0Z2 Transcriptional regulator, AraC family n=1 Tax=D... 76 1e-12 UniRef50_A8TQH1 Transcriptional regulator, AraC family protein n... 76 2e-12 UniRef50_B7VTG6 Transcriptional Regulator, AraC family n=7 Tax=V... 76 2e-12 UniRef50_C8SUE3 Transcriptional regulator, AraC family n=1 Tax=M... 75 2e-12 UniRef50_C6W947 Transcriptional regulator, AraC family n=1 Tax=A... 75 2e-12 UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=... 75 2e-12 UniRef50_A3YG00 Transcriptional regulator n=2 Tax=Proteobacteria... 75 3e-12 UniRef50_C9YV93 Putative transcriptional regulator n=2 Tax=Strep... 75 3e-12 UniRef50_A6E603 Transcriptional regulator, AraC family protein n... 75 3e-12 UniRef50_Q2SGY3 AraC-type DNA-binding domain-containing protein ... 75 3e-12 UniRef50_D2Q0X6 Transcriptional regulator, AraC family n=1 Tax=K... 75 3e-12 UniRef50_D0LVV0 Transcriptional regulator, AraC family n=1 Tax=H... 74 4e-12 UniRef50_Q0JZZ7 Transcriptional regulator, AraC-family n=1 Tax=R... 74 5e-12 UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=C... 73 9e-12 UniRef50_C4DJ08 DNA-binding domain-containing protein, AraC-type... 73 9e-12 UniRef50_P35319 Putative araC-like transcription regulator n=6 T... 73 1e-11 UniRef50_A9CLF9 Transcriptional regulator, AraC family n=5 Tax=R... 73 1e-11 UniRef50_D0XYL8 Transcriptional regulator, AraC family n=1 Tax=C... 73 1e-11 UniRef50_B5GM94 Helix-turn-helix domain-containing protein n=1 T... 73 1e-11 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 72 1e-11 UniRef50_B5GNS1 AraC-family transcriptional regulator n=2 Tax=St... 72 2e-11 UniRef50_D2B8S3 Transcriptional regulator containing an amidase ... 72 2e-11 UniRef50_C0XNW0 AraC family transcriptional regulator n=1 Tax=Co... 72 2e-11 UniRef50_UPI000178921D transcriptional regulator, AraC family n=... 72 2e-11 UniRef50_Q0KAF9 Transcriptional regulator, AraC-family n=9 Tax=B... 72 3e-11 UniRef50_A8GL35 Transcriptional regulator, AraC family n=2 Tax=S... 72 3e-11 UniRef50_C9XTT1 Putative uncharacterized protein n=1 Tax=Cronoba... 71 4e-11 UniRef50_C6B325 Transcriptional regulator, AraC family n=5 Tax=A... 71 4e-11 UniRef50_Q5YVF5 Putative transcriptional regulator n=1 Tax=Nocar... 71 4e-11 UniRef50_A9MI90 Putative uncharacterized protein n=1 Tax=Salmone... 71 5e-11 UniRef50_B2TM72 AraC-family transcriptional regulator n=3 Tax=Cl... 71 5e-11 UniRef50_B0AA61 Putative uncharacterized protein n=1 Tax=Clostri... 70 5e-11 UniRef50_B9XR23 Transcriptional regulator, AraC family n=2 Tax=V... 70 7e-11 UniRef50_C9PQP0 AraC family transcriptional regulator n=1 Tax=Pa... 70 8e-11 UniRef50_A6WBY5 Helix-turn-helix-domain containing protein AraC ... 70 9e-11 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 70 1e-10 UniRef50_C0ABA0 L-rhamnose operon transcriptional activator n=1 ... 70 1e-10 UniRef50_C9PGE8 Transcriptional regulator AraC family n=1 Tax=Vi... 70 1e-10 UniRef50_B5JHR7 Transcriptional regulator, AraC family protein n... 70 1e-10 UniRef50_B5ZFX2 Transcriptional regulator, AraC family n=1 Tax=G... 69 2e-10 UniRef50_A9F1M5 Putative araC-like transcription regulator n=1 T... 69 2e-10 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 69 2e-10 UniRef50_Q5QL43 Two-component response regulator n=2 Tax=Geobaci... 69 3e-10 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 69 3e-10 UniRef50_A6VS98 Helix-turn-helix-domain containing protein AraC ... 68 3e-10 UniRef50_D0LQY3 Transcriptional regulator, AraC family n=1 Tax=H... 68 3e-10 UniRef50_C7Q0G5 Transcriptional regulator, AraC family n=1 Tax=C... 68 3e-10 UniRef50_A1UBR1 Transcriptional regulator, AraC family n=5 Tax=M... 68 3e-10 UniRef50_D1VIA8 Transcriptional regulator, AraC family n=1 Tax=F... 68 3e-10 UniRef50_A9CGU4 Transcriptional regulator, AraC family n=2 Tax=A... 68 4e-10 UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnos... 67 5e-10 UniRef50_Q6FBY5 Putative transcriptional regulator (AraC family)... 67 5e-10 UniRef50_Q885H7 Transcriptional regulator, AraC family n=5 Tax=c... 67 5e-10 UniRef50_C6D1W5 Transcriptional regulator, AraC family n=1 Tax=P... 67 5e-10 UniRef50_B0MQ29 Putative uncharacterized protein n=1 Tax=Eubacte... 67 5e-10 UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostri... 67 8e-10 UniRef50_A5FIC2 Sensor protein n=3 Tax=Bacteria RepID=A5FIC2_FLAJ1 67 8e-10 UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=C... 67 9e-10 UniRef50_B6R0G1 Transcriptional regulator, AraC family n=1 Tax=P... 67 1e-09 UniRef50_C6AWA8 Transcriptional regulator, AraC family n=1 Tax=R... 66 1e-09 UniRef50_A7MMI8 Putative uncharacterized protein n=1 Tax=Cronoba... 66 1e-09 UniRef50_C9Z0D8 Arabinose operon regulatory protein n=2 Tax=Stre... 66 1e-09 UniRef50_Q47ES4 Transcriptional regulator, AraC family n=2 Tax=B... 66 1e-09 UniRef50_D1N3N0 Transcriptional regulator, AraC family n=1 Tax=V... 66 1e-09 UniRef50_Q2GAB8 Transcriptional regulator, AraC family n=1 Tax=N... 66 1e-09 UniRef50_A6FWZ8 Transcriptional regulator, AraC family protein n... 66 1e-09 UniRef50_C0ZDD0 Probable transcriptional regulator n=1 Tax=Brevi... 66 1e-09 UniRef50_Q6FB96 Putative transcription regulator (AraC family) n... 66 1e-09 >UniRef50_P77379 Uncharacterized HTH-type transcriptional regulator ykgD n=85 Tax=Enterobacteriaceae RepID=YKGD_ECOLI Length = 284 Score = 585 bits (1509), Expect = e-166, Method: Compositional matrix adjust. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT Sbjct: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY Sbjct: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG Sbjct: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR Sbjct: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP Sbjct: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 >UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=Cupriavidus RepID=Q46N37_RALEJ Length = 322 Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 156/315 (49%), Gaps = 34/315 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS L+ L +P GT+D +C + W + + +H + G A + + ++ Sbjct: 1 MDSLSELVRLLSPSGTVDLHCRVAGAWSAHNAQAPAGHMPYHVILDGRADVTIGK-DVLP 59 Query: 61 LRPGNVVLLPQNSAH--------------------RLSHVDNESTC--------IVCGTL 92 + G+V+L P+ +AH R + V E T I+CGT Sbjct: 60 VSAGDVLLFPRGAAHTLASAQRTRRSGPPRGTASQRFNGVVTEITVPGADAPLDILCGTF 119 Query: 93 RLQHSARYFLTSLPETLFL-----APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 L A L +LPE L + +P + WLR I + E+ + PG A+ + Sbjct: 120 ALGGGAGILLRALPEMLCVPTAGPSPGEGGHDAGWLRGLIGMMHAEAETPRPGGAAIIAD 179 Query: 148 ICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 + FT+ +R I++ + +L+LL R+ + ++ P WT+ESLA A++SR Sbjct: 180 LSTALFTVLLRTLISRGTVTRGVLALLADTRMAKAVDAVVGSPERPWTIESLAQSANVSR 239 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 A+ A+ F + G TPL ++T LR++ AA++ ++ L +AE GYAS+++F +AF + Sbjct: 240 ATLARRFTQLGGITPLELVTTLRMERAARLLQQDNLSAAAVAERCGYASQAAFGRAFSGQ 299 Query: 268 FGCTPGEYRERVRQL 282 FG PG YR + R L Sbjct: 300 FGVGPGAYRRQQRAL 314 >UniRef50_Q21EK5 Histidine kinase n=2 Tax=Saccharophagus degradans 2-40 RepID=Q21EK5_SACD2 Length = 292 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 24/289 (8%) Query: 9 MLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVL 68 +LNA + I N + +WQ+ A + +H +T+G L +P LR G++VL Sbjct: 10 LLNA-KVDIYHNAKICGNWQI--NAHHVGRTCFHVVTEGMCLLALPGQADCVLRTGDLVL 66 Query: 69 LPQNSAHRLSHVDN----------------ESTCIVCGTLRLQHSA-RYFLTSLPETLFL 111 P+ H L VD E T ++C +++L H A RY L ++PE L + Sbjct: 67 FPKEIEHTLMPVDPLAGEQQHLPYVQAQHLEGTGLLCASVQLNHGAGRYLLDAIPEVLII 126 Query: 112 APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNIL 171 N+S WL L+ E P D + ++C FT A+ I + +L Sbjct: 127 R--NNSAN-AWLSPLTELLRIEHYQQGPLGDVVIQRLCELMFTYAMANCIEDSTVQTGLL 183 Query: 172 SLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRL 231 +L HPRL A IQ M + P +W++E+LA A MSR +FA F+++SG TP+ LT R+ Sbjct: 184 ALYAHPRLSAAIQAMHDHPAKSWSLEALAQQAAMSRTAFATAFKELSGWTPMQYLTWWRM 243 Query: 232 QIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 Q+A + + + PV ++A+ +GY SE++F +AF EF T GE R R Sbjct: 244 QLAWHLLA-DGEPVAIVADKIGYQSEAAFSRAFKSEFKQTAGEVRRGAR 291 >UniRef50_B2TGP8 Transcriptional regulator, AraC family n=13 Tax=Betaproteobacteria RepID=B2TGP8_BURPP Length = 323 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 142/314 (45%), Gaps = 37/314 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LSRLL L PQ ++D C+L + + HG E + +H + GA +E G Sbjct: 1 MDTLSRLLDLARPQASLDLRCLLSGAFDIDHGPLEAGIAPFHLVLDGACVVETADGTQRE 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC---------------------------------- 86 LR G+ +L P+ +AHR+ V + Sbjct: 61 LRTGDFMLFPRGAAHRVRDVQRSAVTAPLTQSHDGMLPLRRNDGSDSHDSLDSARIAADL 120 Query: 87 -IVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 ++CG S+ L +LP+ F ++ + L+ I ++ E+ G A+ Sbjct: 121 DLLCGRFVYSPGSSALLLNALPDP-FHVSLSGMETLDSLQTVIALMRSEAERRQAGALAI 179 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + + +A+R Q +L+LL RLGA +Q ML P AWT+ L +A Sbjct: 180 VTALSHALLAIALRVHGEQNAAASGVLALLADARLGASVQAMLSAPERAWTIAELGDLAA 239 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSRA++A+ F + + T + LT++R+ IA + R I E+VGY SE++F KAF Sbjct: 240 MSRATYARHFNERASMTVMDFLTQIRMTIACDLLRRTQRSAAEIGEAVGYQSEAAFGKAF 299 Query: 265 VREFGCTPGEYRER 278 + G PG YR R Sbjct: 300 QQSVGVPPGRYRRR 313 >UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A7MK74_ENTS8 Length = 304 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 151/302 (50%), Gaps = 26/302 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS+L+ L AP+ ++D +C WQ H + I WHA+ G+A+L + GE+ Sbjct: 1 MDSLSQLIALLAPESSVDLHCRFAGRWQSDHAQSPVGHIPWHAILSGSARLVL-NGEVIH 59 Query: 61 LRPGNVVLLPQNSAHRL-SHV-----------------------DNESTCIVCGTLRLQH 96 R G++ LLPQ +AHRL SH D+ ++CG R Sbjct: 60 ARAGDIFLLPQGAAHRLESHKQDGVAARVQRHDNAVVTEVVTEGDDTPLVMLCGEFRTGV 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 S + P +A + L + L ES S PG A+ ++ +T TL Sbjct: 120 SGALLFSGQPALQRIATGGRE-DCRSLAALLTMLSDESLSGRPGAAAIVRELSSTLLTLV 178 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R +A N + +L LL RL + +L P WT+ES+A+ +SRA+FA+ F Sbjct: 179 LRALLADENGAQGMLPLLADKRLAPAVSAVLTNPEQPWTLESMAARCFLSRATFARHFAS 238 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TP A L ++R+ AA++ RE + +AE+ GY ++++F KAF +G TPG++R Sbjct: 239 RYPLTPQAWLNQVRMARAARLLEREQDAIGRVAEACGYLTQAAFSKAFKNAWGVTPGQFR 298 Query: 277 ER 278 ++ Sbjct: 299 QQ 300 >UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Proteobacteria RepID=A9AQB1_BURM1 Length = 317 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/313 (28%), Positives = 139/313 (44%), Gaps = 31/313 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLE-MPTGEIF 59 +D+LS+LL + G ++ C GS WQL I +H + G A LE TG I Sbjct: 4 VDSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTGSIT 63 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNESTCIVC------GTLRLQHSA--------------- 98 L G++VLLP +AH L + C+ C G +R H Sbjct: 64 ELASGDIVLLPHGAAHVLHDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRFHIR 123 Query: 99 ----RYFLTSLPETLFLAPVNHSVE-----YNWLREAIPFLQQESRSAMPGVDALCSQIC 149 R LP TL + V+ + N L + ++ S PG A + + Sbjct: 124 PPHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASLVELMRMVSVGDKPGGYATLNALT 183 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 + FTL +R +L+L HPRL I M P W++ LA + +MSRA+ Sbjct: 184 SALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMSRAT 243 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F + F D G + +LT +R+ +AA + + +AES+GY S ++F + F + G Sbjct: 244 FMRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTDKMG 303 Query: 270 CTPGEYRERVRQL 282 TPG++R R ++ Sbjct: 304 MTPGQWRRRTDEV 316 >UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y4B2_CROTZ Length = 312 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 26/302 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS+L+ L AP+ +ID +C W H I WHA+ G A+L + GE+ T Sbjct: 9 MDSLSQLIALLAPESSIDLHCRFAGRWASDHAQSPAGHIPWHAILSGNARLVL-NGEVIT 67 Query: 61 LRPGNVVLLPQNSAHRL-SHV-----------------------DNESTCIVCGTLRLQH 96 + G++ LLP + HRL SH D ++CG R Sbjct: 68 AQAGDIFLLPHGAPHRLESHKQDGARAPAQRHENGVITEVVTEGDEAPLVMLCGEFRTGV 127 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 S + P +A + L + L ES S PG A+ ++ +T TL Sbjct: 128 SGALLFSGQPAVQRIA-TGARDDCRSLTALLTMLSDESLSGRPGAAAIVRELSSTLLTLV 186 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R +++ N +L LL RL + +L P H WT+ES+A+ +SR++FA+ F Sbjct: 187 LRALLSEENAAPGMLPLLADKRLAPAVSAVLANPEHPWTLESMAARCFLSRSTFARHFAS 246 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TP L ++R+ AA++ RE + +AE+ GY ++++F KAF +G TPG++R Sbjct: 247 RYPLTPQGWLNQVRMARAARLLEREQRAIGRVAEACGYLTQAAFSKAFKSAWGVTPGQFR 306 Query: 277 ER 278 ++ Sbjct: 307 QQ 308 >UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C6AKL4_AGGAN Length = 293 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 31/299 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L+ L+ +G I+ C DW + H + R+H ++QG ++ + + + Sbjct: 1 MDYLDQLIRLSGIEGEINILCRFWGDWLVHHKQEPNLIGRFHIVSQGTCQIRLKD-QTYH 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIV-----------------------CGTLRLQHS 97 L+PG+VV LP H + H + T I CG R + Sbjct: 60 LKPGDVVFLPYGEEHIIYHGADTETQITKTTQGVFTLHRNSSNESGDFEMFCGYFRYLNV 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 A+ L +LP LA N S+ + L++E+ + G + + +C FT + Sbjct: 120 AQSLLFNLPH-WHLAGNNDSI-----MALLKLLRKETEDNL-GNEVVVDALCNILFTYLI 172 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R+++ + IL L RL + ++ P +W++E LA MSRA+F + F+ Sbjct: 173 RDYLQHHQVNQGILGALQDKRLKNAVNAIIANPKESWSMEVLAESCAMSRANFIRAFKQK 232 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G P LT +R+ +A + P+ VIA VGY S++ F K F +G +PG+YR Sbjct: 233 TGILPGKFLTIMRMNMAGMLLKNTQKPISVIASEVGYQSDTHFTKVFKSYYGISPGKYR 291 >UniRef50_O31249 Transcriptional regulator (XylS/AraC family) n=5 Tax=Acinetobacter RepID=O31249_ACIAD Length = 306 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 146/311 (46%), Gaps = 39/311 (12%) Query: 1 MDALSRL---LMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE 57 MDALS++ + LN + K +W H + ++I H + G+A + G Sbjct: 1 MDALSKIFDDIHLNKSEYLYVKT---QGEWAF-HMLAQDALIA-HIILMGSAHFTLQDGT 55 Query: 58 IFTLRPGNVVLLPQNSAHRLSHVDNESTCIVC-----------------GTLRLQHSARY 100 T G++VL+P AH +S+ D ++ I C GT H + Sbjct: 56 TQTAYSGDIVLIPSGQAHFVSN-DAQNKLIDCSNIQSFFDGHRNDAIELGTTSSDHGLIF 114 Query: 101 -------------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 L +LP + + S WLR + F+ E++ PG D + Sbjct: 115 TVRSHIDMHMGSPLLNALPSLIHIHHAMSSTGPEWLRVGLYFVALETQRIQPGRDKIFDH 174 Query: 148 ICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 + + F VR+ IAQ++ K+ L+ L+HP L + + P WTVESLA MSR Sbjct: 175 LMSILFIECVRDHIAQLDDPKSWLTALMHPELSNALAAIHAYPEKPWTVESLADQCCMSR 234 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 + FA LF+ + TPLA L + RL++A Q+ L + IA VGY+SE++F +AF R+ Sbjct: 235 SKFATLFQSIVHETPLAYLQQHRLRLAVQLLKTSQLNIQQIANKVGYSSETAFSQAFKRQ 294 Query: 268 FGCTPGEYRER 278 F +P YR++ Sbjct: 295 FEQSPKHYRQQ 305 >UniRef50_C6AQ53 MtrA n=4 Tax=Pasteurellaceae RepID=C6AQ53_AGGAN Length = 302 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 141/305 (46%), Gaps = 35/305 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL-PHGAGELSVIRWHALTQGAAKLEMPTGEIF 59 MD L +L+ L G ++ C+ WQ+ P+ V +H + QG L + +I Sbjct: 1 MDCLDKLIQLAQVSGEVNIRCLFQGQWQIQPNITENQYVGAFHLIEQGECWLTLGERQI- 59 Query: 60 TLRPGNVVLLPQNSAHRLS-------------HVDNESTC--------------IVCGTL 92 L+ G++ LPQN H ++ DN ST + CG Sbjct: 60 HLQAGDIFFLPQNRPHLIAGQAQNLSENNVPQQQDNASTLFKVYSIGQNSADLKMFCGLF 119 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + + +LPE L L S+ ++ + +QQE+ + G +L + Sbjct: 120 YYSKPS-LLIDALPEYLHL-----SLNGTPVQSVVQLMQQEADNHQQGAKSLIDALVTVL 173 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 F +R + + +L+ RLG V+QQ+ P AW +++LA +A MSRA+F + Sbjct: 174 FIYILRHGLQENLLHCGLLAAFQDKRLGKVLQQLFNAPQQAWNMDALAELAAMSRANFMR 233 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 +F+ G P LT+LRLQ AA + ++ V+ +A VGY SE+ F KAF +G +P Sbjct: 234 VFQQKIGMAPGKFLTQLRLQEAALLLNKTQKSVLAVALDVGYQSEAHFSKAFKALYGVSP 293 Query: 273 GEYRE 277 +YR+ Sbjct: 294 SQYRK 298 >UniRef50_B7V4F0 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V4F0_PSEA8 Length = 303 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 145/307 (47%), Gaps = 29/307 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L RL+ L QG +D+ C L W L H +H + G E G Sbjct: 1 MDPLDRLIQLANLQGRLDQRCQLQGSWALEHPQAVPGEATFHIVMAGTCYCEFLDGGRLD 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC-----------------------IVCGTLRLQHS 97 L PG+++LLP+ + H L C ++CG+ R H+ Sbjct: 61 LHPGDLILLPRGTPHLLRSDSPAQPCEPTVEHRGSIPLYQLNGPGEALDMLCGSYRY-HA 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 +LPE L L ++ S + LR I +++E+ S G ++ + F LA+ Sbjct: 120 GASLFGALPERL-LVHMDESTQQP-LRALIGLMREEAESTRSGARSIIDALATALFALAL 177 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R ++ + + LL RLG ++ MLE P HAWT+E LA A MSRASF + F + Sbjct: 178 RAYLDRQPLGDGLFGLLGDARLGRALRAMLERPEHAWTLEQLAQQAAMSRASFVRAFSAL 237 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 GT+P +LT++R++ A + + ++ IA GY SE++F + F + FG +PG +R Sbjct: 238 GGTSPWNLLTRIRMEKARGLLRQTQKSLLDIAAETGYQSEAAFSRNFRQAFGESPGRFR- 296 Query: 278 RVRQLAP 284 RQ P Sbjct: 297 --RQADP 301 >UniRef50_A4JQL6 Transcriptional regulator, AraC family n=6 Tax=Burkholderia RepID=A4JQL6_BURVG Length = 345 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 36/319 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG---- 56 MD L RLL + G +D C GS W++ H + +H L +G A +E TG Sbjct: 20 MDMLDRLLSMMPVTGRLDVRCHFGSPWRIDHPESNERELPYHILLRGEAVVEGETGGADE 79 Query: 57 EIFTLRPGNVVLLPQNSAHRLSHVDNE-----------------------STCIVCGTLR 93 ++ G++V+ P SAHRL + S ++CG Sbjct: 80 PTLRMKAGDIVVFPSGSAHRLHDGSGDAPRAVQERHRNGLTITTNGGADASIDVLCGRFV 139 Query: 94 LQHSARYFLTS-LPETLFLAPV--------NHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 L + L LP L ++ V + + L I +++E+ G A+ Sbjct: 140 LPAVPQQLLRDHLPRRLIVSSVAAGDGQTRDAAFAATRLARVIELMREEALEQRAGSAAV 199 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + F L +R + + +L+L RL + M + P WT+ LA H Sbjct: 200 VDHLSGALFALTLRSASESGHAPRGLLALAQRHRLQPALTAMFDEPEKPWTLAQLAERCH 259 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSRA+FA+ F + + VLT++R+ +A + ++ T+ V I E+VGY SE++F + F Sbjct: 260 MSRATFARHFDEAISRSATDVLTEIRMALAGRKLAQTTMSVAEIGETVGYRSEAAFQRVF 319 Query: 265 VREFGCTPGEYRERVRQLA 283 R+ G TP ++R + ++A Sbjct: 320 KRQVGMTPAKWRMQATRIA 338 >UniRef50_B2HZJ1 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HZJ1_ACIBC Length = 321 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 35/265 (13%) Query: 47 GAAKLEMPTGEIFTLRPGNVVLLPQNSAH------------------------------R 76 G+ +++ E T R G+++L+P AH Sbjct: 51 GSVYIQLNVSEKITARAGDIILIPSGKAHHATDSKATASKLVDPVDITPLFNGHRHDPIE 110 Query: 77 LSHVDNESTCIVCGTLRLQ---HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQE 133 L +E+T ++C LR Q + A + +LP + + N + WL+ + FL E Sbjct: 111 LGSSTSENTLLLC--LRCQVDTYMAGPLINALPSIMHIQHENQATPPEWLQIGLYFLAVE 168 Query: 134 SRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHA 193 ++ PG D + + + +R+ I Q++ ++N L L HP L + + P + Sbjct: 169 TQKIQPGHDKIIDHLVSILLIECIRDHIQQMSDQQNWLGALTHPELSNALSAIHSQPEIS 228 Query: 194 WTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVG 253 WTVESLA MSR+ FA LF + G PL L R ++A+Q L + I+ VG Sbjct: 229 WTVESLAEQCCMSRSKFANLFNSIIGEPPLTYLQHYRFRLASQYLRTSNLSIQQISNKVG 288 Query: 254 YASESSFHKAFVREFGCTPGEYRER 278 Y+SE++F +AF R F +P +YR+ Sbjct: 289 YSSETAFSQAFKRVFDLSPKQYRQN 313 >UniRef50_A0NP67 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NP67_9RHOB Length = 315 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 110/200 (55%), Gaps = 3/200 (1%) Query: 81 DNESTC-IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 D + C + CG + + + L +LP + L P ++ WL + F+ E R+ Sbjct: 111 DEDMACKLFCGHFEFEEGSVHPLLDALPAVIHL-PNTQTMNAFWLEAVMRFVASEVRAGQ 169 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 PG +A+ ++ F VR ++ + L+ +L+P+LG + ++ P WTVES Sbjct: 170 PGSEAIIHRLTEIIFIQVVRTFVDREGDRAGCLAAVLNPKLGRSMSKIHLAPEKPWTVES 229 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA A MSR FA F ++ G TPLA +T R++ A + LP++ IAE++GY+SE+ Sbjct: 230 LAREAGMSRTVFADRFTNLVGMTPLAYVTHWRMERARRDIRETDLPLIDIAENIGYSSEA 289 Query: 259 SFHKAFVREFGCTPGEYRER 278 +F++AF R+F TPG+ R + Sbjct: 290 AFNRAFKRQFNQTPGQVRRQ 309 >UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JN73_RHOER Length = 379 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 21/285 (7%) Query: 4 LSRLLMLNAPQGTIDKNCVLGSDW--QLPHGAGELSVIRWHAL---TQGAAKLEMPTGEI 58 LS +L + +G CV G ++ +P G L + + TQG A +E Sbjct: 99 LSHVLEVVHLRGDQIHRCVHGENFTVDVPAGVRALHIAEHGDIVIRTQGKAPIE------ 152 Query: 59 FTLRPGNVVLLPQNSAHRLS-----HVDNESTCIVCGTLRLQH-SARYFLTSLPETLFLA 112 L PG +VLLP AH + H NE TC + GT L +A+ L+ LP+ + L Sbjct: 153 --LGPGELVLLPHGHAHTIENAMPMHPKNE-TCWLFGTFTLDDVAAQRLLSVLPDFVELR 209 Query: 113 PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILS 172 WL + L E PG + S+I F +R W + L+ Sbjct: 210 -ATQGTPVEWLDVSSRLLGAEVDDPKPGSSVMVSRILDLLFVQILRAWARADGSNGGWLT 268 Query: 173 LLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQ 232 + PR+G ++ + P WT++ LA+++ +SR+SFA+ F + G TP A +T+ RL Sbjct: 269 AAMDPRIGQALEAVHNDPSRNWTIDELATLSTLSRSSFAERFSRLVGQTPGAYITERRLD 328 Query: 233 IAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 AA++ + T PV IA +VGY S+++F +AF R F +P +R+ Sbjct: 329 RAAELLVQTTEPVGTIAITVGYESDAAFSRAFRRRFDASPLNWRK 373 >UniRef50_Q2KWV1 AraC-family transcriptional regulator n=1 Tax=Bordetella avium 197N RepID=Q2KWV1_BORA1 Length = 321 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 147/315 (46%), Gaps = 36/315 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+LL L + D C+L + + H A + +H L G +L+ G Sbjct: 1 MDTLSQLLSLGRIELRPDVRCLLQGAFAMRHEAAQPGEAAFHLLLAGQCRLQARQGPALI 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC------------------------------IVCG 90 L G+ VLLP SAH L +D E+T ++CG Sbjct: 61 LNEGDFVLLPHGSAHDL--LDIEATTARRPVPAVVEEAGRLPLRRNTAPEQQADVDLLCG 118 Query: 91 TLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 A F SLP L + P+ H + L+ I L+ E+ S +PG A+ + + Sbjct: 119 RFSYDRGAGDLFARSLPGVLHV-PLAHHLP--QLQPLIAMLRAEAASPLPGAAAVINALG 175 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 LA+R + + N+L+L R+G ++ M++ PG AWT+E+L + A MSRA+ Sbjct: 176 QALLALALRAYGQREEVPANMLALAADSRIGPSVRAMIQDPGQAWTIETLGNKAAMSRAT 235 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 +A+ FR +G T L ++R+ A+ + + IAE VGY SE++F KAF G Sbjct: 236 YARHFRSRAGMTVGEFLLRIRMMHASALLNHSQRSQRDIAEQVGYQSEAAFGKAFREIMG 295 Query: 270 CTPGEYRERVRQLAP 284 TPG++R R P Sbjct: 296 QTPGQWRRLHRNARP 310 >UniRef50_P45008 Uncharacterized HTH-type transcriptional regulator HI1052 n=17 Tax=Haemophilus influenzae RepID=Y1052_HAEIN Length = 298 Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 133/306 (43%), Gaps = 37/306 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L L +G I+ C +WQ+ H + +H + QG L + + F Sbjct: 1 MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTLNEKQ-FH 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCI------------------------VCGTLRLQH 96 L+ G+V LPQN H + + N+ I CG Q Sbjct: 60 LKEGDVFFLPQNQPHSMHYSANKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQ 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQ---QESRSAMPGVDALCSQICATFF 153 A S+PE L + + + P +Q QE++ G ++ + Sbjct: 120 DA-LLTASMPEYLHINLCDTPIH--------PLVQLFLQEAQKNDAGTKSVVDALSNVLL 170 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R I Q E+ IL L RL + +L+ P + W +E LA +A MSRA+F ++ Sbjct: 171 IYILRHAIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRI 230 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F+ G +P LTK+RLQ AA + + V+ IA VGY SE+ F K F + +P Sbjct: 231 FQQHIGMSPGRFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPS 290 Query: 274 EYRERV 279 +YR+ V Sbjct: 291 QYRKSV 296 >UniRef50_Q485B0 Transcriptional regulator, araC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q485B0_COLP3 Length = 304 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 146/307 (47%), Gaps = 35/307 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS +L QG++ N S W L + + +H + +GA L++ + Sbjct: 1 MDSLSSILKSVRLQGSVYFNACFASPWGLDLDQNQRAY--FHLIIRGACYLQLGDKKE-Q 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC----------------------------IVCGTL 92 L+ G++++LP +AH+L D+ S+ I+CG Sbjct: 58 LQGGDIIILPHGTAHQL--FDDPSSVRVNATGVVPGLIDGINPFEGVGHSQDIDILCGYF 115 Query: 93 RLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 +S YFL +LP+ + L H +++L A+ F+ QE++ G + L ++ Sbjct: 116 NFNNSTPSYFLNALPDVIHLTQ-EHRTHFSFLDNALSFITQETKMKNLGREILIDRVTEL 174 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 F +R +I E+NI S L L +Q M WTVESLA MSR+ F+ Sbjct: 175 LFVQIMRVYININGNEENIFSALSDRTLSEALQLMHTESDKNWTVESLAKAIGMSRSRFS 234 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G TP+ L R+++A Q + +I+E VGYAS+S+F KAF + FG T Sbjct: 235 EHFHNYIGETPMRYLHTCRMEVAKQKIEETESTLNIISEEVGYASDSAFKKAFKKFFGNT 294 Query: 272 PGEYRER 278 P +R++ Sbjct: 295 PSTFRQK 301 >UniRef50_D1BRX4 Transcriptional regulator, AraC family n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BRX4_XYLCX Length = 324 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 117/264 (44%), Gaps = 34/264 (12%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARY- 100 H LT G A + + G++ L PG ++L+P + H++ + + G R RY Sbjct: 42 HLLTAGRAVVSV-DGDVHELVPGELLLVPHGTGHQILSAPDAPASGLWGIEREVVGERYE 100 Query: 101 ---------------------------FLTSLPETLFLAPVNHSVEY-NWLREAIPFLQQ 132 L SLP + H E +WLR A+ + Sbjct: 101 RLVVDGGGAPARLVCGAVTFADPGVGRLLASLPAVVR----AHGGETGSWLRAAVDAIAH 156 Query: 133 ESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGH 192 E+ G D + +++ AVR+W+ L+ L LG V+ + P Sbjct: 157 EAEHPRGGSDVVTARLADVILVQAVRDWLDDAEPPSGWLAALRDDVLGPVLAAVHTDPAR 216 Query: 193 AWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESV 252 WT+ESLA++AH+SR++FA+ F V G P A + RL +AA+M V +AE V Sbjct: 217 PWTLESLAALAHLSRSAFAERFAAVVGEPPAAYVAGWRLGLAARMLCEPGASVAAVAERV 276 Query: 253 GYASESSFHKAFVREFGCTPGEYR 276 GY S FH+AF R G TPG +R Sbjct: 277 GYDSVPGFHRAFTRRHGMTPGAWR 300 >UniRef50_A6GC16 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC16_9DELT Length = 316 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL--PHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MD LS +L + GT+ LGS + L P G R+H +G LE+ GE Sbjct: 1 MDLLSDILRVIPLHGTLYFRAELGSPFGLAVPRNEG---AARFHIALEGECTLELGEGEG 57 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGT 91 LR G + L+P + H L S T +VCG Sbjct: 58 VRLRRGELALVPHGARHHLVDAPARSVVELEAALAASGWTGAGPFRYGGPGARTTLVCGH 117 Query: 92 LRLQHSARY-FLTSLPETL-FLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 + L +LP L F A H ++ WL + + ++ +E+ G +A+ S++ Sbjct: 118 FAFPPGVLHPLLDALPRVLHFGADAGH--DFRWLDDVMRYIGEEAGGDRAGREAVLSRLA 175 Query: 150 ATFFTLAVREWI--AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 F +R ++ + ++ +N+L+ + P+LG + + E P W++++LA A MSR Sbjct: 176 EILFIHMLRAYVESCEEDSAENVLAAIADPQLGRALTLIHERPAQKWSLQALAQGAGMSR 235 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 FA+ F TP+ LT+ R+++A + V +A+SVGY SE++F +AF R Sbjct: 236 TLFAERFAACVQLTPMQYLTRWRIELAKAQLRQSERSVAEVADSVGYLSEAAFGRAFKRL 295 Query: 268 FGCTPGEYR 276 G PG YR Sbjct: 296 VGVGPGGYR 304 >UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MF52_VIBVY Length = 308 Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 134/256 (52%), Gaps = 23/256 (8%) Query: 41 WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV----------------DNES 84 +H +T+G +L++P TL G++V+ P+ H L+ + D + Sbjct: 57 FHMVTKGDCRLDVPDVMQETLNTGDLVIFPKELNHSLAPITPLSGEQQHLSYAQCQDPNA 116 Query: 85 TCIVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T ++C + QH + L +LP +F+ S + WL + + ES G D Sbjct: 117 TGLLCAKVEFQHIGIHGILQALP-CVFVIKAEESEK--WLTPIMSMILAESYQDGTGSDV 173 Query: 144 LCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 + ++ F A+R ++ + +LSL HP+L VI + + P H WT+ESLA Sbjct: 174 IIGRLAELLFINALRAYLYSHPEQVGLLSLYAHPKLRHVISAVHQQPQHDWTLESLAKHC 233 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIA-AQMFSRETLPVVVIAESVGYASESSFHK 262 MSR++ A FR +SG+T + LT R+Q+A +Q+ + ++ + ++AESVGY SE++F + Sbjct: 234 AMSRSALANTFRQISGSTVIEYLTWWRMQLAWSQIKAGDS--IALVAESVGYRSEAAFSR 291 Query: 263 AFVREFGCTPGEYRER 278 AF + F +PG+ R+ Sbjct: 292 AFKKAFLISPGKARKE 307 >UniRef50_A9DAF9 Transcriptional regulator, AraC family protein n=3 Tax=cellular organisms RepID=A9DAF9_9RHIZ Length = 334 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 127/268 (47%), Gaps = 30/268 (11%) Query: 38 VIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN--------------- 82 V+ + +T GA LE+ E LR G++ L+P ++ H LS Sbjct: 48 VMTFMVVTSGACWLELEGHEPRFLRQGSLALIPHSTPHVLSSAKGLAGAPLFDLPVEKVS 107 Query: 83 ------------ESTCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPF 129 E T + G +R +A + L LPE + + + WL+ + F Sbjct: 108 ERYEVLRHGGGGELTRSMYGVVRFDDVAAEHLLKLLPEIIMIDSWDDQTG-GWLQSTLRF 166 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLE 188 + E+ + PG + + +++ A+R W+ + + L L P++G + M Sbjct: 167 IANEAITLKPGGETVITRLSDVVVIQAIRSWLETSPSADTGWLKALRDPQVGKTLALMHR 226 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 PGH W+VE+LAS A MSR++FA F ++ G TPL LTK R+++A + + VI Sbjct: 227 EPGHDWSVETLASRAGMSRSAFAARFSELVGETPLKYLTKWRMRVARNRLIDTSDALAVI 286 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYR 276 + +GY SE+SF +AF R FG PG R Sbjct: 287 SNDLGYQSEASFCRAFKRVFGQPPGSIR 314 >UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Proteus mirabilis RepID=C2LP41_PROMI Length = 308 Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 34/308 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+LL L+ Q +D C + + LPH + +H + G +++ Sbjct: 1 MDTLSQLLYLSQGQLQLDVFCQMKGHFSLPHVSSVEHETIFHLVLSGQCYVQIEKSAPIV 60 Query: 61 LRPGNVVLLPQNSAHRL--------------------------SHVDNESTCIVCGTLRL 94 L G ++L + +H L S + ++CG + Sbjct: 61 LSEGTFLMLNRRQSHTLWSGERDIEPLPFLHKNNGFLPVKYTKSEDQTQHVDLLCGRMTY 120 Query: 95 -QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPF---LQQESRSAMPGVDALCSQICA 150 + S L P+ + V + VE L F L++E+ +A G A+ + + Sbjct: 121 AKGSGLLLLNGFPDMV----VANLVEMPGLTVLNLFSQLLREEAINANQGAAAILNGLAQ 176 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 T F A+R + + + + L+LL PRL V ML P WT++SLA++A MSRA+F Sbjct: 177 TLFAFALRVYGQKPDINSSWLALLAEPRLSRVFNSMLNEPQKGWTLDSLANVASMSRATF 236 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F+ + TTP VL +R+ A + + + IAE VGY SE++F KAF F C Sbjct: 237 VRQFKATANTTPGEVLQSIRMLKALSLLQQNKYTLSDIAERVGYQSEAAFSKAFKSVFNC 296 Query: 271 TPGEYRER 278 PG+++++ Sbjct: 297 RPGQWKKQ 304 >UniRef50_C9R1V8 MtrA n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=C9R1V8_AGGAD Length = 305 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 140/309 (45%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVI-RWHALTQGAAKLEMPTGEIF 59 MD L +L+ L G ++ C+ +WQ+ H A E + +H + QG L + +I Sbjct: 1 MDCLDKLIQLAQVSGEVNIRCLFQGEWQVRHDADENQYVGAFHLIEQGDCWLTLENQQIH 60 Query: 60 TLRPGNVVLLPQNSAH----------------------------RLSHVDNESTCI--VC 89 L+ G + LPQN H ++ H+ S + C Sbjct: 61 -LQAGELFFLPQNRPHFIASKAQDNVIQTRITPSDAQEDQQDLFKVYHIGQNSPDLKMFC 119 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G L + + +LP L L S+ L I LQQE+ G +L + Sbjct: 120 GMLYY-NKPSLLIDALPSYLHL-----SLRDTPLLPLIQVLQQEADKTRSGAKSLIDSLV 173 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 F +R + + +L+ RL V+ Q+L P AW +++LA++A MSRA+ Sbjct: 174 TVLFIYILRHGLQNEQLNQGVLAGFQDKRLNPVLTQLLNAPQQAWNMDTLAALAAMSRAN 233 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F ++F+ G P LT+LRLQ AA + ++ ++ IA VGY SE+ F KAF +G Sbjct: 234 FMRVFQHTIGMAPGKFLTQLRLQQAALLLNKTQKSILAIALEVGYQSEAHFSKAFKIAYG 293 Query: 270 CTPGEYRER 278 TP +YR+R Sbjct: 294 MTPSQYRKR 302 >UniRef50_D1V7I4 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D1V7I4_9ACTO Length = 308 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 132/306 (43%), Gaps = 37/306 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L T+ + W L G + +H + QG L + Sbjct: 1 MDVLTDVLAALETGPTLCARTRAHAPWGLRFGGNQ--GFGFHVVLQGTCWLSSGDDQPRA 58 Query: 61 LRPGNVVLLPQNSAHRLS----------HVDNES------------------TCIVCGTL 92 LR G+VVLL + H L+ +D E T ++ G Sbjct: 59 LRAGDVVLLAGGTEHTLADAPTTPAVTFRLDRERQSTRIGHEHVAGVAGGARTVLLSGAY 118 Query: 93 RLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 RL+ + L +LP+ + L + N L A+ L E PG +A+ S + Sbjct: 119 RLEKRRPHPLLATLPDVVHLP----NRRRNGLHAAVDLLGAEVEEQEPGAEAIVSSLVGA 174 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R W Q + L P +G + +M P WTVE L + A +SRA+F Sbjct: 175 LLVYILRAW--QEDHPSGWSRALADPAVGPSLHRMHRDPARPWTVEQLGAAAGVSRATFT 232 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G PL LT+ RL AA+M ++ +P+ V+A SVGY SE +F KAF RE+G Sbjct: 233 RRFTALVGEPPLTYLTRWRLTSAARMLRQQDVPLSVVAHSVGYTSEFAFAKAFKREYGLA 292 Query: 272 PGEYRE 277 PG YR Sbjct: 293 PGTYRR 298 >UniRef50_B1JWG2 Transcriptional regulator, AraC family n=13 Tax=Burkholderia RepID=B1JWG2_BURCC Length = 315 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 35/315 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS+LL L +D C+L + +PH +H + GA +L G Sbjct: 1 MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGACRLRAADGRTLQ 60 Query: 61 LRPGNVVLLPQNSAHRL----------------SHVDN-----------------ESTCI 87 L G+ VLLP AH L SH + S + Sbjct: 61 LAEGDFVLLPAGGAHDLLDAAGGRSKPLVPLRDSHAGDGAVLPVKSNLDPAEPGGASVDL 120 Query: 88 VCGTLRLQHSARYFLT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 +CG A L +LP L + + + L+ L+ E+ + PG A+ + Sbjct: 121 LCGRFVYARGAGELLMRTLPPVLHVG-LRDTSGAAPLQLLTSVLRTEASNVQPGAGAIVN 179 Query: 147 QICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 + A+R + L+L RLG +Q +L+ P WTVESL + A MS Sbjct: 180 ALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPAQPWTVESLGAEAAMS 239 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 RA++A+ FR+ +G + A + ++R+ A + I ++VGY SE++F KAF Sbjct: 240 RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQADIGQAVGYQSEAAFGKAFRA 299 Query: 267 EFGCTPGEYRERVRQ 281 G TPG +R R+ Sbjct: 300 VLGTTPGRWRRARRE 314 >UniRef50_UPI0001AEBE6B AraC family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBE6B Length = 298 Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 125/279 (44%), Gaps = 32/279 (11%) Query: 26 DWQLP-HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN-- 82 +WQ+ G G I +HA+T G L L G++VLLP +S H LS Sbjct: 26 NWQIDTSGTG---FINFHAVTHGQCYLHRNDDGPVLLEKGDMVLLPVDSPHLLSPTKTHT 82 Query: 83 -----------------ESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLR 124 E ++CG QH R LPE + S E L Sbjct: 83 YKNVSASSIPVSEKLRAEGPVLLCGYFEYQHPLMRVITKELPEFWIIKKA--SKESRVLH 140 Query: 125 EAIPFLQQESRSAMPGV---DALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 E++ L S L ++I F L V+ +++ ++ L LLHP + Sbjct: 141 ESLQLLISASLEVSDSTFTSSVLLNKIAEVVFLLIVKHLMSKYSS---TLGALLHPAIAN 197 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 +Q + P W VE LASIA+MS++++A F+ +G TP+ LT+ RL+ A + Sbjct: 198 SLQALHNAPEQHWNVEMLASIANMSKSNYAAKFKACAGVTPIKYLTQWRLRCACTEIIQS 257 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 P++ IA GY +E+SF KAF RE G +P + R + R Sbjct: 258 NKPLITIANQYGYETEASFSKAFKREIGVSPSQKRVQAR 296 >UniRef50_A9M194 AraC-family transcriptional regulator n=29 Tax=Neisseria RepID=A9M194_NEIM0 Length = 325 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 37/309 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L+ G++D C+LG W + H + + H +T G L + GE + Sbjct: 25 MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGL-VHIVTSGNGYLCI-DGET-S 81 Query: 61 LRP---GNVVLLPQNSAHRLSHV-----------------------DNESTCIVCGTLRL 94 RP G++V P+ H LSH + + + C R Sbjct: 82 PRPVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQCGNGQDMSLFCARFRY 141 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 A + LPET+FL + S++Y + LQ ES + G ++ + + + Sbjct: 142 DTHAD-LMNGLPETVFLNIAHPSLQY-----VVSMLQLESEKPLTGTVSVVNALSSVLLV 195 Query: 155 LAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 L +R ++ Q + +L RLG +IQ++++ P W V+ + + A+MSRA + Sbjct: 196 LILRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKMVAAANMSRAQLMR 255 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F+ G +P A + +RLQ A + + V+ +A SVG+ SE+ F KAF R++ +P Sbjct: 256 RFKSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSETHFGKAFKRQYHVSP 315 Query: 273 GEYRERVRQ 281 G+YR+ Q Sbjct: 316 GQYRKEGGQ 324 >UniRef50_B1G656 Transcriptional regulator, AraC family n=1 Tax=Burkholderia graminis C4D1M RepID=B1G656_9BURK Length = 327 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 118/257 (45%), Gaps = 21/257 (8%) Query: 40 RWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTC------------- 86 R+H + GA +L+ + TL G++VLLP+ AH LS + + Sbjct: 60 RFHFIQDGAFRLDAIAIDTTTLVAGDLVLLPKGCAHVLSAIHARDSLPGSPSRPDECRSF 119 Query: 87 ------IVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 ++ G+ + SA + LP+ + L + S W + F++ E+ P Sbjct: 120 AEKPFRVLTGSFVFESASAGSLIAGLPDVIHLR-ADASGTPEWQHAILRFVRLEASEPSP 178 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G + S++ ++REW+A+ L L RLG + M E P H W + +L Sbjct: 179 GAALMISRLIDLLVIRSLREWVAKSPAHSGWLRGLGDARLGRALAAMHEDPAHEWKLGAL 238 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A IA MSR+ FA F ++ G PL L + RL +AA + + + A GY S+SS Sbjct: 239 AKIATMSRSHFADRFTEIVGEPPLRYLARWRLSLAADLLRNGRVRISEAASVAGYQSDSS 298 Query: 260 FHKAFVREFGCTPGEYR 276 F +AF FG +PG R Sbjct: 299 FSRAFKAHFGYSPGAIR 315 >UniRef50_C0DSD5 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DSD5_EIKCO Length = 302 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 141/307 (45%), Gaps = 38/307 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L+ L +G ID C LG + L H E R H + G+ L + G+ Sbjct: 1 MDVLDKLIYLARLRGRIDVCCRLGGGFHLEHKT-EPETARLHWVVSGSGWLRVGNGQTVA 59 Query: 61 LRPGNVVLLPQNSAHRLS---------------HVDNESTCIVCGTLRLQ---------- 95 L G+ VLLP ++AH ++ H + CG RLQ Sbjct: 60 LSTGDAVLLPYDTAHSIADSLEGLEQPAGKPQLHGNGVLAVKDCGGNRLQLLCGQYRYTR 119 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 H+A + +PE L L P+ +R+ + E+ G + + + Sbjct: 120 HAALWL--GMPECLLL-PLPE------MRQTASMMLDEAERLRYGSGTVVNALSQVMLVA 170 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R + Q +++ + LS L PRL ++Q +L P W++ +A +A +SRA +LF+ Sbjct: 171 VLRRY-RQQSSDPSFLSQLEDPRLSGLLQAVLLAPQEDWSIARMAEMAKLSRAQLMRLFK 229 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V G +P + +RLQ AA + ++ IA G+ SES F++AF + FG TP +Y Sbjct: 230 SVIGESPHRFVLSIRLQQAAVQLAASADTILRIALENGFVSESHFNRAFKQYFGQTPKQY 289 Query: 276 RERVRQL 282 RV+QL Sbjct: 290 --RVQQL 294 >UniRef50_C7Q710 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q710_CATAD Length = 319 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 127/275 (46%), Gaps = 37/275 (13%) Query: 36 LSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVD-------------- 81 +S +H + +G +L P GE L PG++V L + S H + D Sbjct: 34 ISGASFHVVMEGRCRLLRPEGEPLALGPGDIVFLRRGSGHTMCDPDTPHPEPMDFAPHRL 93 Query: 82 --------------NESTCIVCGTLRLQHSARYFL-TSLPETLFL--APVNHSVEYNWLR 124 T +VCG ++ R+ L T++PE + L AP + V LR Sbjct: 94 DDSSPIGQFTVEGPGPRTVLVCGAYKIDADHRHPLFTNMPEIIHLPAAPGRYPV----LR 149 Query: 125 EAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI--LSLLLHPRLGAV 182 AI L E RS PG DA+ + + +R W A++ ++ + L + Sbjct: 150 SAIDQLCAEFRSPQPGSDAIVTALVDLLLLHILRSWYAELPKDQTCGWAAALTDHAIAPA 209 Query: 183 IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 ++ + + PG WTVESLA+ +SRA+FA+ F V G PL LT R+ AA++ Sbjct: 210 LKAIHDAPGDPWTVESLAARTGLSRAAFARRFAAVVGVPPLTYLTNWRMATAARLLRESP 269 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 V IA+ GY SE +F KAF R FG PG YR+ Sbjct: 270 STVNTIAQRTGYTSEFAFAKAFKRHFGSPPGSYRK 304 >UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01W15_SOLUE Length = 327 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/316 (25%), Positives = 139/316 (43%), Gaps = 41/316 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPH----------GAGELSVIRWHALTQGAAK 50 MDA S +L G + + + W G G V+ +H + +G A Sbjct: 1 MDAFSEILSGVKLNGAVFFSAEFSAPWGFSSPASKQMAATLGLGASHVVLYHFVVEGGAL 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLS--------------------------HVDN-- 82 +E+P + L+PG++V+ P H +S H Sbjct: 61 VELPERQSVELKPGDIVIFPHGDPHHMSSGAEATRPFPNYGIMSKIKARDLSPLHAGGGG 120 Query: 83 ESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 E++ VCG + + +R L+ LP +F + +WL +I L +E+ S G Sbjct: 121 ETSRFVCGYMTCDPYVSRPILSGLP-AVFKVNIRTDRAGHWLENSILHLVEEAASGRVGS 179 Query: 142 DALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 +A+ +++ F +R ++A + + + L+ P +G + + H WT+ LA Sbjct: 180 EAMLAKLSEALFVDTLRRYVAGLPDQQVGWLAGARDPIVGKSLGLLHSRVSHPWTIADLA 239 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 +SR++ + F P+A LT+ RL +AA+ + + V IA VGY SE++F Sbjct: 240 DEVGISRSALVERFTRYLSEPPMAYLTRWRLTLAARSLEKTSRGVAEIAADVGYESEAAF 299 Query: 261 HKAFVREFGCTPGEYR 276 ++AF REFG PG YR Sbjct: 300 NRAFKREFGSPPGRYR 315 >UniRef50_B5JV28 Transcriptional regulator n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV28_9GAMM Length = 314 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 135/315 (42%), Gaps = 39/315 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLP-HGAGELSVIRWHALTQGAAKLEMPTGEIF 59 MD LS LL G K L W++ H G V +H +TQG L Sbjct: 1 MDTLSLLLNDIRLSGARFKRAELQPPWKMHLHTPG---VASFHVVTQGQCILVRGQEAPL 57 Query: 60 TLRPGNVVLLPQNSAHRLS----------------HVDNESTCIVCGTLRLQHS------ 97 + G+VV+LP+ AH L+ H+D+E + V + H Sbjct: 58 EVHTGDVVILPRGPAHDLADSAGSLQAASAIDLKQHLDSEQSGGVQTLYNISHPQSADHM 117 Query: 98 -----------ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 AR ++LP+ + ++ S +WL + FL E + A+ + Sbjct: 118 VSGYFEFDSDLARPLFSALPDLIHYRAMD-SETPDWLHFGMMFLNTEIAAQRSAQQAIIN 176 Query: 147 QICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHM 205 +I +R+++ + N L L P L A + M P W+V LA IA + Sbjct: 177 RIADILLIECLRDYVDNLPEGSGNWLLALKDPALSAALSAMHSQPDKQWSVPQLADIACL 236 Query: 206 SRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFV 265 SR+SFA F V G PL+ LT R+++AA P+ IAE VGY S+++F +AF Sbjct: 237 SRSSFANRFGKVLGEPPLSYLTAHRMRLAAWQLRNSNQPICHIAEQVGYQSDAAFSQAFR 296 Query: 266 REFGCTPGEYRERVR 280 R C+P YRE R Sbjct: 297 RIHDCSPSRYREHSR 311 >UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI96_CATAD Length = 315 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 18/233 (7%) Query: 64 GNVVLLPQNSAHRLSHV-----------DNESTCIVCGTLRLQH-SARYFLTSLPETLFL 111 G+ VLLP+ AH +S D +CGT + A + L SLP + L Sbjct: 81 GDFVLLPRGDAHSISDAGLGGSPAGGDADRRPARWLCGTFTIGDPQASHLLGSLPAVIIL 140 Query: 112 ----APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE 167 P ++E + + L+ +S S G + ++I F +R W A + E Sbjct: 141 RGSGGPDLEALEGLEVARRMIVLEMQSPSQ--GSAVMVARILDLIFIQIMRTWAAGADVE 198 Query: 168 KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLT 227 N L+ P++G + + PG WTVE LA ++SR+SFA F + G P L Sbjct: 199 PNWLAGAFDPQIGLALSAIHRDPGREWTVEELARACNLSRSSFAARFVERVGKPPATYLA 258 Query: 228 KLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +RL A + LPV +AE+VGYASE++F +AF +G P +R +R Sbjct: 259 HVRLDAATTLLRDTFLPVTQVAETVGYASEAAFSRAFKNRYGTPPARWRRDIR 311 >UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGT9_9NEIS Length = 316 Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 80/309 (25%), Positives = 137/309 (44%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 M L L+ L G+ID C DW + H + + H +T G L++ + Sbjct: 1 MTILDNLITLAQITGSIDVQCSFNGDWYVRHSSQRTQGV-VHIVTHGTGYLKLDNEAQAR 59 Query: 60 TLRPGNVVLLPQNSAHRLSH------------------VDNESTCIVCGTLRLQHSARYF 101 L+ G+++ P+N+AH LS + ++ T +L +F Sbjct: 60 QLQAGDIIFFPRNAAHTLSSQIGCNNSQHAPSISQQGSITHKQTSASANAAQLNLYCAHF 119 Query: 102 --------LTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 L LPE + L + ++ + + LQ E A + + Sbjct: 120 AYETHNSLLQGLPEIIIL-----NTPHSTTQAIVSLLQYEISQNEHSTTAAINALSTVLL 174 Query: 154 TLAVREWIAQVNTEKNILSLLLHP----RLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 +R +++Q N + L+ +L+ RL +V+Q + + PG W VE LA +A +SRA Sbjct: 175 VHILRTYLSQ-NEHQAPLTGVLNGWRDRRLRSVVQAVTQEPGRDWRVEELAELAKLSRAQ 233 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 +LFR T+P A ++ +RLQ AA + ++ +A GY SE+ F K F + +G Sbjct: 234 LMRLFRSQMQTSPHAFVSSMRLQKAAMLLRNSQSTILAVALESGYQSETHFGKVFKKHYG 293 Query: 270 CTPGEYRER 278 CTP +YR++ Sbjct: 294 CTPKQYRQQ 302 >UniRef50_A4F0L2 Transcriptional regulator, AraC family protein n=7 Tax=Rhodobacterales RepID=A4F0L2_9RHOB Length = 330 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 131/313 (41%), Gaps = 39/313 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIF 59 +D LS +L + QGT+ W + H +V R+H +G + +P +G+ Sbjct: 14 LDLLSDILTRLSLQGTLYFRTSFTPPWGV-HVPSYQNVARFHFAHRGECLVHLPQSGDTI 72 Query: 60 TLRPGNVVLLPQNSAHRL-------------------------------SHVDNESTCIV 88 L G++VL+P + H L D+ T ++ Sbjct: 73 RLAQGDLVLIPHGAEHMLFCSTTGKEAVLSLDRVIEASGYTGEGVLVYGGDEDDRDTQLI 132 Query: 89 CGTLRLQHSAR-----YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 CG + R L LP L + + WL + + E+ G D Sbjct: 133 CGHISYGVQGRAGGGHMLLDRLPPYLHIQDYGEA-RGAWLEATLRVIGAEAGKDRLGGDL 191 Query: 144 LCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 + ++ F A+R + ++ + + L+ P+L + + P +WTVE LA IA Sbjct: 192 IALKMSEALFAQAIRVHLESLSPDDSSLAGFADPQLSRALSAFHKAPAQSWTVEQLARIA 251 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MSR FAQ F G TP+ LT R+QIA Q + L V AE GYASE++F + Sbjct: 252 GMSRTGFAQSFSAKMGLTPMQYLTTWRMQIACQGLVEQGLNVADAAEMAGYASEAAFSRV 311 Query: 264 FVREFGCTPGEYR 276 F ++ G +P YR Sbjct: 312 FRKQIGVSPAAYR 324 >UniRef50_A2SEH8 Transcriptional regulator, AraC family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SEH8_METPP Length = 337 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 30/270 (11%) Query: 38 VIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNES------------- 84 +I +H + G+ +L +P E LR G+ VLLP +HRL ++ + Sbjct: 65 IIPFHVIATGSCRLALPGHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLPCQPW 124 Query: 85 --------------TCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPF 129 T I+CG L+ R L LP L ++P ++ WL I Sbjct: 125 KDMPQVEHGGGGAVTHIICGFLQCDELLFRPILRHLPTLLHVSPDATPADH-WLGSTIRH 183 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKN-ILSLLLHPRLGAVIQQMLE 188 E+ PG ++ ++ F +R+ + ++ ++N + P G+ ++ + + Sbjct: 184 TAAEASRTTPGSRSMLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKLLHD 243 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 P W+VE LA +SR A+ FR P+ L RLQ+AAQ P+ I Sbjct: 244 APLQDWSVERLARAVGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPLKTI 303 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRER 278 A+ VGY SE++F +AF R FG PG +R R Sbjct: 304 ADRVGYESEAAFSRAFKRHFGLPPGSWRLR 333 >UniRef50_A7JVV0 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JVV0_PASHA Length = 298 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 138/309 (44%), Gaps = 46/309 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL--PHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MD L RLL I C L DWQL PH G+ H ++ G A L+ G+ Sbjct: 1 MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIA---HIISYGQAYLQH-NGKT 56 Query: 59 FTLRPGNVVLLPQNSAHRL-SHVD-----------------------NESTC-IVCGTLR 93 L+ G++V P+ + H L S + ++S C + C Sbjct: 57 HHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAGLSQSECDMFCLHFY 116 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 H A + SLPE + V L+ + L+QE+ + V ++ + + Sbjct: 117 YDHQAE-LMESLPEMIVF-----QVAETPLKAMLDILKQEAETPNLAVKSVVNSLAVVIL 170 Query: 154 TLAVREWIAQVNTEKNILSLL-----LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 T+ +RE + VN + +L LH R +I+ +L P H W V+ +A+ H+SRA Sbjct: 171 TMILREHL--VNHNNQLFGILKGWQDLHLR--PLIKAILLNPEHEWQVDDMAAFIHLSRA 226 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 +LF +P A + K+RLQ AA + + V+ IA S G+ SES F AF +++ Sbjct: 227 QLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSESHFITAFKKQY 286 Query: 269 GCTPGEYRE 277 TP +YR+ Sbjct: 287 CVTPSQYRQ 295 >UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQD3_9PROT Length = 325 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 31/273 (11%) Query: 40 RWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV------------------- 80 R+H + QG + P+G + PG++VL+P+ +H L+ V Sbjct: 39 RFHLVVQGRCHVGFPSGASADIGPGDLVLIPRGQSHVLADVAGREAPPLETVLAGYDGRG 98 Query: 81 --------DNESTCIVCGTLRLQHSARY-FLTSLPETLFLAPVNH-SVEYNWLREAIPFL 130 + +T +VCG + A + L +LPE +L N WL + + + Sbjct: 99 VLVVGTGDSSATTQMVCGHFTFRAGADHPILRALPE--YLVTTNAMRARRPWLDDILRLV 156 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMP 190 ++ S G A +++ F +R I Q +++L ++G +Q + P Sbjct: 157 VRQVFSDTIGSTATVTRLSEIVFIELLRVGIGQSAGLRSVLEAFQDQQIGGALQLIHAEP 216 Query: 191 GHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAE 250 +WTVESLA+ MSR+ FA+ F D+ G P++ LT RLQ A + V +A Sbjct: 217 ERSWTVESLAASVGMSRSRFAERFSDLMGAGPMSYLTDWRLQKALSLLDDARCSVQQVAS 276 Query: 251 SVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 GY S ++F +AF +FG P EYR +A Sbjct: 277 RTGYQSPAAFTRAFTGKFGLAPTEYRRSPDNIA 309 >UniRef50_B9XHR2 Transcriptional regulator, AraC family n=1 Tax=bacterium Ellin514 RepID=B9XHR2_9BACT Length = 326 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 4/167 (2%) Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLG 180 W + F+ E+ +PG A+ ++ F LA+R ++ + L L P++G Sbjct: 147 WFHSTLQFIAAEAAQNLPGGTAIVDRLAEVLFVLAMRTRTDSFSSANPSWLRALTDPQIG 206 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF-S 239 ++QM PG WTV LA MSR+SFA FR++ G TPL LT+ R+ AA M S Sbjct: 207 EALRQMHAEPGRPWTVSDLARTVSMSRSSFADRFRELVGETPLGHLTQWRMVRAANMMCS 266 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR--ERVRQLAP 284 + + IA +VGY SESSF K F R G +PG+YR +++ Q P Sbjct: 267 NRPMKMAAIASAVGYESESSFGKVFRRVMGISPGKYRLTKQIDQSTP 313 >UniRef50_C5CL63 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CL63_VARPS Length = 318 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 37/314 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDW--QLPHGAGELSVIR--------WHALTQGAAK 50 MD LS +L +G + N + + W ++P GA ++R H + QG Sbjct: 1 MDVLSDVLRTIRLEGALFLNGDMHAPWCFKVPKGAHMAQLLRPGAQRLAICHLVLQGECW 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAH-----------RLSHVDN---------------ES 84 ++ GE G+V+ +P +H ++HV N + Sbjct: 61 AQVDGGEPIRAHAGDVIAVPHGDSHVVGSGLLQAAVDVAHVVNPRAPELERIRYGGNGDR 120 Query: 85 TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 T +VC + A L + LF + W+ +++ F+ ++ S PG + + Sbjct: 121 TVLVCSWFAYEGDAPNPLMANIPRLFTTSLRSRPAGPWIEQSVNFVLGDAASHTPGSEMV 180 Query: 145 CSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +++ F +R +I + L+ L P + + M P WTV++LA Sbjct: 181 AAKVAEVLFAEVLRGYIESMPANNPGWLAGLRDPHVSRCLALMHGDPARNWTVDALAQEI 240 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 H+SR+ A F ++ G P+ LT+ R+ +AA M ++ + IAE VGY SE++F++A Sbjct: 241 HVSRSVLADRFAELVGAPPMHYLTRWRMILAAGMLRKDQGNLARIAEDVGYESEAAFNRA 300 Query: 264 FVREFGCTPGEYRE 277 F RE+G +PG +R+ Sbjct: 301 FKREYGVSPGVWRQ 314 >UniRef50_A0KNU2 Transcriptional regulator, AraC family n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KNU2_AERHH Length = 267 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 22/259 (8%) Query: 41 WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHR-------------------LSHVD 81 +H L +G ++ G+ LRPG+++LLP H L Sbjct: 3 FHLLMKGEIRVSTAQGDDVVLRPGDLLLLPGGEPHTIWREGDALTLAEPGDGLLPLRGDG 62 Query: 82 NESTCIVCGTLRLQHSAR-YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 + +CG R Q R L +LP L + P+ S L + + QE G Sbjct: 63 GDQVEFLCGEYRYQGPLRPLLLDALPSPLCI-PLLASESQQALSLVLSLIHQELLREQQG 121 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 A+ + + + +R + + ++ L PRLG +Q ML P H W+V+ LA Sbjct: 122 SGAVLTALSQVLLAMGLRAHASDPHGALGLVGALQDPRLGRSLQAMLADPAHPWSVDELA 181 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR-ETLPVVVIAESVGYASESS 259 ++A MSRA++ + FR G + + ++R+ AA++ + LP+ +A+ VGY SE+S Sbjct: 182 ALAAMSRATYFRHFRQRLGCSVWEFMVRVRMVRAAELLRHPDQLPLGEVAQRVGYQSEAS 241 Query: 260 FHKAFVREFGCTPGEYRER 278 F KAF + G PG +R++ Sbjct: 242 FAKAFKQSSGMAPGRFRQQ 260 >UniRef50_A6UH43 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Proteobacteria RepID=A6UH43_SINMW Length = 329 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 137/308 (44%), Gaps = 42/308 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ LL G C L + W + A E + R+H + G L + G+ L Sbjct: 15 DFLTELLRGLRLDGVDYVRCELTAPWGISFPAQETA--RFHFIC-GDCWLRVADGDWIEL 71 Query: 62 RPGNVVLLPQNSAH--------RLSHVD-------------------NESTCIVCGTLRL 94 + G+ VLLP+ H +L+ +D E+T + CG+LR Sbjct: 72 KRGDAVLLPRGGEHALASMPGEKLAPLDAYSVQEVCHCVYNVCGGGRGETTILFCGSLRF 131 Query: 95 QHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFL----QQESRSAMPGVDALCSQIC 149 + + L +P+ + + + S AIP + +E ++ G + +++ Sbjct: 132 NMDSMHPLLRMMPDVMRINALTAS------EPAIPHMLDAMAREVGASRVGSGGVLARLA 185 Query: 150 ATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 L +R W+ ++ + HP LG VI M P AWTV+SLA + SR+ Sbjct: 186 DVLAALIIRSWVEHGCGNTSGWVAAVRHPGLGRVIAAMHLDPEKAWTVDSLARLMGASRS 245 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 FAQ F V G TP L ++R+ A Q +R+ + + V+A +GY SE+SF +AF R Sbjct: 246 GFAQQFASVVGETPARYLAQVRMHQARQWLTRDRMRISVVARRLGYDSEASFSRAFKRVI 305 Query: 269 GCTPGEYR 276 G P YR Sbjct: 306 GQPPSHYR 313 >UniRef50_A0L3B8 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=A0L3B8_SHESA Length = 311 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 2/193 (1%) Query: 87 IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 +VCG + FL SLP + + ++S WL + ++QE++S +PG + L Sbjct: 115 VVCGHFCFNGGPDHPFLNSLPNVVHIKSADNS-HSPWLAMLLSIIEQEAKSGLPGSNTLV 173 Query: 146 SQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHM 205 ++ F A+R + + N L+ +P+L ++ + W ++ LA IA M Sbjct: 174 RKLTEIIFVQALRIHMYKSNKNAGFFKLIENPQLSKTLEAIHHSLDKKWGLDDLAGIAGM 233 Query: 206 SRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFV 265 SR +++ F+++SG TPL LT RL+ A Q+ V ++E++GY + F K F Sbjct: 234 SRTNYSVKFKELSGMTPLDYLTYCRLEKAKQLLKESGKSVPEVSEAIGYPAHEHFQKLFK 293 Query: 266 REFGCTPGEYRER 278 ++ G TP YR+ Sbjct: 294 KKIGKTPSAYRKE 306 >UniRef50_UPI0001C310C0 transcriptional regulator, AraC family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C0 Length = 321 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 132/305 (43%), Gaps = 34/305 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ LL +G + N + W + ++ + +HA+ GA +E+ E Sbjct: 1 MDVLADLLARAHARGAVFSNRRFAAPWGVEFQ--DVFPLTFHAVLGGAMWVELEGEEPLQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHV---------------------------DNESTCIVCGTLR 93 L G+++L+ + +R H D +T ++CG Sbjct: 59 LFGGDLLLVRTGAPYRFVHAPGAPAVSMRRLLDGEPEQQPQPQPPQHDGPATQLLCGAYT 118 Query: 94 LQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 L+ S L SLP LAP+ LR A+ L E + PG + ++ Sbjct: 119 LEGSVCDSLLASLPS---LAPIRGGSVGGPLRTALGLLGDEVATEEPGQQTVLDRLLDLL 175 Query: 153 FTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 ++R W + + + L P G ++ + P H WTV LA++A +SRA+FA Sbjct: 176 LVYSLRAWFTRPEADVPGWYAALEDPAAGPALRAIHSDPAHQWTVAELAALAGLSRAAFA 235 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G PLA LT+ R+ +AA R + +A+ VGY SE + AF R +G Sbjct: 236 RRFSERVGEAPLAYLTRWRMSLAAGALLRPGATLAAVAQEVGYGSEFALSNAFRRTYGEA 295 Query: 272 PGEYR 276 PG +R Sbjct: 296 PGRWR 300 >UniRef50_A8LC22 Transcriptional regulator, AraC family n=3 Tax=Actinomycetales RepID=A8LC22_FRASN Length = 311 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 134/313 (42%), Gaps = 35/313 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L ++ +GT+ G +W A + HA+T G A L P Sbjct: 1 MDVLADVLAVSGVRGTLGARIEAGENWGWWAAASRGAAF--HAVTAGTAWLASPGQSARQ 58 Query: 61 LRPGNVVLLPQNSAHRLSH------------------VDNESTCIVCGTLRLQHSARYF- 101 L PG+VVLLP + H L+ D+ + I G +R ++ Sbjct: 59 LMPGDVVLLPSGTEHVLASDTDTLARTGAHAFDSWEWADSGAVRIGSGPVRTHILCAHYS 118 Query: 102 ---------LTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 LT LP+ + + N L + + L +E G + ++ Sbjct: 119 HDPAVTTQVLTLLPDLVHIRADNAG---GCLDDTVRLLGRELAHPRLGTAVVLDRLVDIL 175 Query: 153 FTLAVREWIA--QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 +R W+A Q + L +L P +GA + ++ E P AWT E+LA +SRA+ Sbjct: 176 LIQLLRVWLATGQARPAASWLGVLDDPVVGAAVAKLHEDPARAWTTEALAGEISVSRATL 235 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 ++ F V G TP A LT+ R+ +AA+ + IA SVGY S +F++AF R Sbjct: 236 SRRFPAVVGETPGAYLTRWRMDLAARRLRDTDDTLESIARSVGYTSVYAFNRAFTRARSQ 295 Query: 271 TPGEYRERVRQLA 283 PG YR R A Sbjct: 296 PPGRYRVSARDSA 308 >UniRef50_A8L3A5 Transcriptional regulator, AraC family n=1 Tax=Frankia sp. EAN1pec RepID=A8L3A5_FRASN Length = 349 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 130/309 (42%), Gaps = 31/309 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L LL G + +L S W + G E + H + +G+ + L Sbjct: 11 DLLGELLRPIRLTGVFQSHWLLNSPWSI-EGDSESDCVVLHYVIEGSCWIGTEGARPVLL 69 Query: 62 RPGNVVLLPQNSAHRLSHV---------------------------DNESTCIVCGTLRL 94 R G++ + P +HR+S + E T I+C L Sbjct: 70 REGDLAVFPTGRSHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQTRILCAGLYY 129 Query: 95 Q-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 ++ +LP L L +VE L I R PG + +I FF Sbjct: 130 DANTVSSLYHALPWILTLE--REAVEAELLLRDIIHQLVTDRDGGPGARLITLRIFEVFF 187 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 L++ + + +L+ L P + + M WT+ESLA MSR++FA Sbjct: 188 ILSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMSRSAFAAS 247 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 FR++ G +P + L R++ +A++ + +P+ I + VGY S FH AF + FG TPG Sbjct: 248 FREIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRKRFGITPG 307 Query: 274 EYRERVRQL 282 EYR+R R++ Sbjct: 308 EYRQRFRRV 316 >UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XTB5_KLEP3 Length = 301 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 27/301 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS LL L AP+ ++ +C G WQ H V+ WH + +G +L + G+ Sbjct: 1 MDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLNV-GGQTHH 59 Query: 61 LRPGNVVLLPQNS----------------AHRLSHVDNESTC--------IVCGTLRLQH 96 LR G+VVLLP S AHR + E ++CG Sbjct: 60 LRAGDVVLLPHGSPHLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLCGEFYFGP 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + L S TL + + L + L +ES + PG A+ + T L Sbjct: 120 HVSW-LFSEASTLIHLHTDAREDCPELDALLNILVRESLAQRPGGSAIVRSLGDTLLVLL 178 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + + +L L+ RL + ++ P WT+ES+A+ A +SRA+FA+ F Sbjct: 179 LRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATFARHFAR 238 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRE-TLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V TP A L++LR+ +AA++ E + VIAE G+ S +SF K F +G TPGE+ Sbjct: 239 VYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYGVTPGEW 298 Query: 276 R 276 R Sbjct: 299 R 299 >UniRef50_B9JLR2 Transcriptional regulator protein n=2 Tax=Rhizobiales RepID=B9JLR2_AGRRK Length = 328 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 35/301 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPH--GAGELSVIRWHALTQGAAKLEMPTGEIF 59 D LS++L L +G + + LG+ W L G+G L H +++G +L G+ Sbjct: 27 DFLSQILTLIRLRGELICSAELGAPWGLTFEPGSGYL-----HVVSEGELRLTASDGKTV 81 Query: 60 TLRPGNVVLLPQNSAHRLS-----------------HVDNES---------TCIVCGTLR 93 R G+++++PQ + H + DN + T +V G R Sbjct: 82 YARAGDLLIMPQGTGHVIGTPGAEPVEARGLLKAQLRDDNLAVRIQGGGPVTHLVTGAFR 141 Query: 94 LQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + + L LP + + + E WL L E+R+A PG + S++ Sbjct: 142 FEGDNMPSMLAVLPSVIHIQGSMDADEKGWLEVLAQSLLSEARAAHPGSAIMISRLIDVL 201 Query: 153 FTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 A+R W+ EK L+ L R+ ++ + + P TV LA++A MSR++FA Sbjct: 202 VIRAMRIWVRTAPPEEKGWLAALADARISRALKAIHDEPFRRRTVAELAAMAGMSRSNFA 261 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G PL T+ RL +A+ M R V +A VGY SE++F +AF +FG Sbjct: 262 ERFSTLVGAGPLHYQTRWRLLLASDMLRRSDARVSDVARRVGYDSEAAFSRAFKAQFGIP 321 Query: 272 P 272 P Sbjct: 322 P 322 >UniRef50_A4XUD0 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XUD0_PSEMY Length = 289 Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 7/245 (2%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARY- 100 H + +G + P + +V+ P ++L D ++C + + S + Sbjct: 39 HVIERGGVDMVQPGLPRVAINEPSVLFCPSTCCYQLHVRDPAGLELICASFQFGRSGQQP 98 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 F L ETL V L I L E R+ PG + + F L VR Sbjct: 99 FPLGLLETL----VFPLAALEQLGPVIATLVNEFRNPAPGRSKALNLLFEYVFVLLVRRA 154 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 + Q +L L RLG + + + P W+VE LA +A MSR+ FA LF +V G Sbjct: 155 VNQGRITSGLLFALQDGRLGPALLCIHQEPAIQWSVERLADLAKMSRSKFAALFSEVMGM 214 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RERV 279 P+A +T R+++A M R+ +P+ +++++VGY+S++SF + F ++ G PGE+ R+ V Sbjct: 215 APMAYVTAWRMKVAQDMM-RDGVPIKIVSDAVGYSSQASFSRTFAQQVGLPPGEWLRQAV 273 Query: 280 RQLAP 284 + P Sbjct: 274 HEPPP 278 >UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacteria RepID=B9JNI2_AGRRK Length = 324 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 137/301 (45%), Gaps = 30/301 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKL--------- 51 MD LS +L L P+ + G DW + G E I+ +A+ G L Sbjct: 1 MDPLSDVLSLLKPRSYMFGGFDAGGDWSIRFGQHE--GIKCYAVVSGQGWLLVESVSDAV 58 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIV--CGTLRLQHSARYF-------- 101 + TG+ F L G +L N + LS +D G++R+ ++ F Sbjct: 59 RLTTGDCFVLPRGWPFVLTSNPS--LSPIDYRQLFPTRPNGSMRVLNNGGDFSIVGGHFT 116 Query: 102 LTSLPETLFLA---PVNH---SVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 LT + LA P+ H + LR + ++QE R PG + Q+ T Sbjct: 117 LTGGHVGVLLAMLPPIVHIRTEADRESLRWCMERMRQELREPQPGGFLIAQQLAYTMLVQ 176 Query: 156 AVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R +A+ V L L ++ I M E P H WT+ SLA A MSR +F F Sbjct: 177 ALRLHLAEGVTGGVGWLFALADRQMAVAITAMHEDPAHRWTLASLAERAGMSRTTFTLKF 236 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 ++ GT+P+ LT+ R+ +A + + + + VIA S+GY SES+F AF R GC+P + Sbjct: 237 KETVGTSPMDYLTRWRMMVAGERLTHSSDSISVIALSLGYESESAFSTAFKRMMGCSPRQ 296 Query: 275 Y 275 Y Sbjct: 297 Y 297 >UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=Rhizobiales RepID=C6B202_RHILS Length = 303 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 26/261 (9%) Query: 39 IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLS-----------------HVD 81 +++ A+ +GA + +P F+L G+ LL A+ ++ H D Sbjct: 38 LKFVAVLRGACSIVLPGEPPFSLVAGDTFLLANAPAYVIANDLDREPEDGIAFFDWEHSD 97 Query: 82 -----NESTCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESR 135 ++ T ++ GT + +AR L +LP + + + + L + L E Sbjct: 98 IARHGSDETALIGGTFVIGGGNARLLLDALPPFIHIPASDRAAAL--LSTTLATLDDELE 155 Query: 136 SAMPGVDALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAW 194 + G + ++ A+R ++ + E + L +P++GA I + PGH W Sbjct: 156 AGQMGSTLMTRRMGDILLVQALRAYVGRKGAAETGWIGALTNPQIGAAISLIHNSPGHRW 215 Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGY 254 TVE+LA+ MSR++FAQ F+++ G PL +T+ R+ A + RE + V +A ++GY Sbjct: 216 TVEALATRIGMSRSAFAQRFKELVGVAPLDYVTRWRMHRAREALRREDVSVAGLAAALGY 275 Query: 255 ASESSFHKAFVREFGCTPGEY 275 +SES+F AF R FG P Y Sbjct: 276 SSESAFGNAFKRVFGRAPKRY 296 >UniRef50_A8M1A6 Transcriptional regulator, AraC family n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M1A6_SALAI Length = 317 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 110/269 (40%), Gaps = 31/269 (11%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLS----------------------- 78 HA+ G L + + L PG++VL+P H S Sbjct: 42 HAVVAGTCWLTVEDMQPRQLAPGDLVLMPTGVRHEFSTDLNLPTRRFDDDLKRSLIQPDG 101 Query: 79 ----HVDNESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQE 133 H T I+C + H A L+ LP L +A WLR + L E Sbjct: 102 DLMLHGPGARTRILCAGYSYEAHGAHPVLSLLPPVLHVA-TAQPENGPWLRAVLDLLAHE 160 Query: 134 SRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI--LSLLLHPRLGAVIQQMLEMPG 191 + SA G D ++ +R W+ + L L P G + + E P Sbjct: 161 TGSAATGSDTAAVRLLDLLLIHVIRVWLHTGGDTVGVSWLRGLHDPVSGRALAVLHEQPS 220 Query: 192 HAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAES 251 WT+E+LA ++SRA+ A+ F G PL L++ RL +AA +LPV IA Sbjct: 221 LNWTLEALAEAVNVSRATLARRFTRHVGEPPLRYLSRWRLSLAAHKLRNTSLPVAAIARD 280 Query: 252 VGYASESSFHKAFVREFGCTPGEYRERVR 280 +GY SE +F++AF R G PG YR R Sbjct: 281 IGYTSEFAFNRAFARAHGHPPGRYRRSAR 309 >UniRef50_Q21H00 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21H00_SACD2 Length = 297 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 122/273 (44%), Gaps = 36/273 (13%) Query: 38 VIRWHALTQGAA--KLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTC--------- 86 V R+H +G ++E +F L G++V++P +AH + D + T Sbjct: 25 VARFHIAIRGQCWLRVEGENKPLF-LANGDLVIIPHGAAHVMG--DTQETAAKPLGDVLS 81 Query: 87 --------------------IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLRE 125 +VCG + L +LP L + + WL Sbjct: 82 ETQYTGEGPLVYGGGGAGCTLVCGEFAFDERETHPLLDNLPSVLSIT-ADQGHHAKWLDA 140 Query: 126 AIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQ 185 + F+ E+ PG A+ ++ F A+R + LS R+ V+ + Sbjct: 141 VMGFVAHEAAQMRPGAHAIIHRLSDIIFIQAIRLLLDSSPHNIPFLSAFADNRISMVLSR 200 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 + P H W+VESL IA+MSR++F+ F +++ +PL + +RL A+++ + Sbjct: 201 IHAEPQHKWSVESLGQIANMSRSAFSNRFSELTQMSPLQYVMFIRLNRASRLLIESDYSL 260 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 IAE +GY SE++F AF ++F C PGEYR+R Sbjct: 261 GQIAELIGYQSEAAFSLAFSKQFDCRPGEYRKR 293 >UniRef50_Q09DL8 Transcriptional regulator, AraC family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09DL8_STIAU Length = 755 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 121/277 (43%), Gaps = 34/277 (12%) Query: 28 QLPHGAGELSVIRWHALTQGAAKLEMP-TGEIFTLRPGNVVLLPQNSAHRLS-------H 79 Q P G V+ +++G A LE +G TL G++ LLP ++ L H Sbjct: 456 QFPDGEAAHIVV----VSRGGALLEFEGSGAPLTLSAGDLALLPHGGSYCLRDAEGSPIH 511 Query: 80 VDNESTC--------------------IVCGTLRLQHSARYFL-TSLPETLFLAPVNHSV 118 V C +V G + + R L LP + +A + S+ Sbjct: 512 VMEGGACQRALALGAPLRLGGQGARSTLVTGAFQFGAAPRTLLFEKLPRVIHVA-ADSSM 570 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 L A+ L ES S PG + S++ A+R IA + + L L P+ Sbjct: 571 AAPSLASAVQLLIAESTSTRPGTTVVMSRLADILLVQAIRTHIAAGGCQNHGLCALADPQ 630 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 +G + + E P +WTVESLA+ +SR+ FA F + G PL L + R+ AAQ+ Sbjct: 631 IGKALALIHERPAESWTVESLAAAVALSRSGFAARFSSLVGDPPLEYLARWRMTKAAQLL 690 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 L + +A GY SE+SF++AF R G PG Y Sbjct: 691 RESNLSLSEVAAHAGYHSEASFNRAFKRWEGVAPGAY 727 >UniRef50_A7NLR2 Transcriptional regulator, AraC family n=2 Tax=Chloroflexaceae RepID=A7NLR2_ROSCS Length = 342 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 128/306 (41%), Gaps = 35/306 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKL--EMPTGEI 58 MD+LS +L + ++ LGS W L +V HAL +G L E G + Sbjct: 20 MDSLSHVLNTVRLRSSVYCRSELGSPWGLHFAPRSCAVF--HALHRGNGYLCVEGDAG-L 76 Query: 59 FTLRPGNVVLLPQNSAH-----------RLSHVDNESTC------------IVCGTLRLQ 95 LR G+VVLLP H R +D C I+CGT + Sbjct: 77 LPLREGDVVLLPGGEEHSILETPDAPLFRNLELDQWGECALMRWSDAPTAVILCGTFDFE 136 Query: 96 HSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 H Y L LP + + +S L + + E+ + P + ++ F Sbjct: 137 HIGTYALLKHLPRVVHIPRSENSA----LNSILALMASEAEAGRPAKEVALRRLADILFI 192 Query: 155 LAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 ++ W+ E+ L P +G ++ + P H+WTV +LA SR+ FA Sbjct: 193 QIIQRWVEIEGIERCGWFGALHDPLIGRALELIHAQPQHSWTVAALARAVACSRSFFAAR 252 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMF-SRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G P+ L + RLQ+A + + IA +GY SE++F KAF R G P Sbjct: 253 FTALVGEPPMEYLRRWRLQLATHLLMDHAHVSAGDIAARIGYHSEAAFSKAFKRSLGIAP 312 Query: 273 GEYRER 278 G YR+R Sbjct: 313 GAYRKR 318 >UniRef50_C5V7T6 Transcriptional regulator, AraC family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7T6_9PROT Length = 298 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 23/270 (8%) Query: 27 WQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT-LRPGNVVLLPQNSAHRLSHVDN--- 82 W + G+ + +H + G A + M T + G++ P ++AH S ++ Sbjct: 31 WHMSTPGGDATT--FHLVCHGGAWIHMQDHSQPTQMHSGDIAFFPHDAAHTFSALEKVPD 88 Query: 83 ---------------ESTCIVCGTLRL-QHSARYFLTSLPETLFLAPVNHSVEYNWLREA 126 T ++CG L+L H R L S PE + + P + S +R Sbjct: 89 KPFDYRNPAPLDKTAPGTGLLCGHLKLPTHIRRLLLASFPEFILIRP-DQSPVGRQMRNL 147 Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQM 186 I + +E+ GV A+ ++ T F VR + +L+ L L + Sbjct: 148 IEMMTEEAMQNDLGVTAILDRLSDTLFLYIVRHALHLEPKLSPLLAALSDEHLRLAVSAF 207 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 +E P AWTV+ +A +A SR++F++ F + P+ +T R+Q+AA M + E ++ Sbjct: 208 IEQPAQAWTVDRMARLACQSRSAFSERFTQLVKMPPMEFVTTWRMQLAAGMLAGEYSNML 267 Query: 247 VIAESVGYASESSFHKAFVREFGCTPGEYR 276 +A GY SE++F KAF R G TPG+ R Sbjct: 268 DVALRCGYESEAAFRKAFKRIIGITPGKAR 297 >UniRef50_B2TAQ8 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TAQ8_BURPP Length = 349 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 49/322 (15%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELS-----------VIRWHALTQG-- 47 MDALS +L L G + N + W L +G + ++ +H +T+G Sbjct: 1 MDALSDVLRLVRLGGAVYLNGDFTAPWCL-YGQADAGLCGSFLPPAERIVSYHLITEGGC 59 Query: 48 -AAKLEMPTGEIFTLRPGNVVLLPQNSAHRL-SHVD------------------------ 81 A+ + P I+ + G ++++PQ AH L S +D Sbjct: 60 WASLADDPESAIY-VAAGELLVVPQGEAHLLGSSLDVTPGPTGELLESQLRNAPGQVMAL 118 Query: 82 -----NESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESR 135 + T +VCG L + + L++LP +F + + + WL ++ F E+ Sbjct: 119 CYGGGGDRTRLVCGFLACDDTLSNPVLSALPR-IFKVDMRNDPQSAWLESSLRFAAAEAA 177 Query: 136 SAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAW 194 G + +++ F AVR I + ++ K L+ + +G + M P H W Sbjct: 178 EWRVGSAIVLARLSELLFVEAVRRCIDALPSDRKGWLAGVGDRFVGRALALMHAQPAHGW 237 Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGY 254 TV+ LA A +SR++ AQ F + G P+ L RLQIAAQ T + +A+ VGY Sbjct: 238 TVDELARKAGLSRSALAQRFTQLLGQPPMQYLAHWRLQIAAQELRGGTKSLAAVADQVGY 297 Query: 255 ASESSFHKAFVREFGCTPGEYR 276 SE++F++AF REFG P +R Sbjct: 298 ESEAAFNRAFKREFGMPPAGWR 319 >UniRef50_A1TZC9 Transcriptional regulator, AraC family n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TZC9_MARAV Length = 327 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 134/310 (43%), Gaps = 43/310 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDW--QLPHGAGELSVIRWHALTQGAAKLEMPTGEIF 59 D L L GT+ L S W ++P G++ +H +TQG+ L + Sbjct: 14 DPLGETLCSLRMDGTVYATAELISPWGMEMPPLGGKMM---FHIVTQGSCWLRFKDQDSL 70 Query: 60 TLRPGNVVLLPQNSAHRLSHVDN-----------------------------------ES 84 L+ G++ L+P+ H +SH +N E Sbjct: 71 LLKTGDLALVPKGEGHCISHSNNQPCEPFFDIPVTRLTDRFEFMRYGGAGTEEQRTGEEE 130 Query: 85 TCIVCGTLRL-QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T + CG L Q +A+ + LP+ + + + ++ L I ++QE+R+ PG Sbjct: 131 TRLTCGVLGFDQIAAQKLIRELPQCIHIKGDDGALPAE-LTTLIQLMEQEARALSPGGVT 189 Query: 144 LCSQICATFFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + + + A+R WI + K L L P+LG + + P WTV LA Sbjct: 190 VMAHLADIIVIQAIRHWINSSAEASKGWLGALKDPKLGKALAAIHAHPEADWTVSRLARH 249 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 A MSR+ F+ F +V GT+ LT+ R+ +A + + + +AE +GY SE++F + Sbjct: 250 AGMSRSGFSARFTEVIGTSVKQYLTEWRMNLARLRIGQSPVTLTELAEELGYQSEAAFSR 309 Query: 263 AFVREFGCTP 272 A+ R FG P Sbjct: 310 AYKRVFGVPP 319 >UniRef50_C8PYQ8 Transcriptional regulator, AraC family n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYQ8_9GAMM Length = 327 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 3/199 (1%) Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 E IVC R R L++LPE L + + L + FL ES G Sbjct: 118 EIVAIVCHYDR--EITRPLLSALPEILPESESKDEQKMIMLDLGVKFLALESEQNRLGKM 175 Query: 143 ALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++I + VR +I + N L + P L + M + P WT+ LA Sbjct: 176 TIINRIASILMIECVRNYIEDLPEATDNWLKAVKDPYLAKALAVMHDRPETNWTIHKLAE 235 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 +A MSR+SFA+ FR+V G PL LT RL++AA+ + + I+E VGYAS+S+F Sbjct: 236 VAGMSRSSFAEHFREVVGVPPLTYLTDYRLRLAARYLRLQENSISRISELVGYASDSTFS 295 Query: 262 KAFVREFGCTPGEYRERVR 280 +AF R + +P +YR+ R Sbjct: 296 QAFKRVYKMSPRKYRQSFR 314 >UniRef50_B1M4B9 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M4B9_METRJ Length = 326 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 135/302 (44%), Gaps = 27/302 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS L L + +D C G W H A + +H +T+G A L P G + Sbjct: 19 DPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHLVTRGRATLRRPGGAPLQV 78 Query: 62 RPGNVVLLPQNSAH-----------------RLSHVDNESTCI--------VCGTLRLQH 96 G+++LLP+ AH R +H T + +CG L + Sbjct: 79 AAGDILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTTVGAEPDVELICGRLAFEA 138 Query: 97 SARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + R + T+LP+ L L+ V + +++E G A+ + + F + Sbjct: 139 APRTLIVTALPDLLVLS-VGAEPLATRFAPLLAGIREELNDLRAGSVAVAENLASALFMM 197 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R + + +L LL P + M+ P H WT+++LA+ A SRAS + FR Sbjct: 198 MLRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDALAATAAASRASLVRAFR 257 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +G PL LT LRL +A ET+ + +A VGY S ++ +AF+R++G PG+ Sbjct: 258 AAAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAAALSRAFLRKYGIRPGQA 317 Query: 276 RE 277 R+ Sbjct: 318 RQ 319 >UniRef50_B6A116 Transcriptional regulator, AraC family n=5 Tax=Rhizobium RepID=B6A116_RHILW Length = 323 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 121/301 (40%), Gaps = 28/301 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L L P TI +W + G + + +T G E Sbjct: 1 MDPLSEVLSLLKPSSTISSGFDAAGEWSIQFGDQHRQIKCYVIVTGGCWLAVDGVDEAVR 60 Query: 61 LRPGNVVLLPQNSAHRLS-----------------HVDNESTCIVCGTLRLQ-------- 95 L G+ +LP+ RL+ T GT L Sbjct: 61 LEQGDCFVLPRGLPFRLASDLGLSPVPAPTLFPPARAGGVVTLNGGGTFSLAGARFAVGG 120 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 +SA L LP + L + E + LR +I + QE S PG + + Sbjct: 121 NSADMLLEMLPPIVHL---SRETERDALRWSIERMMQELSSHQPGGHLMAQHLSHMMLLQ 177 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 A+R ++ + K L L I+ M P WT+ L A MSR+ FA+ F+ Sbjct: 178 ALRIHLSDGHQRKGWFYALADRNLSGAIRAMHANPARNWTLAELGETAGMSRSVFAERFK 237 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G TP+ L++ R+ +A F PV V+A ++GY SES+F KAF R GC+P +Y Sbjct: 238 ATVGETPIEYLSRWRMLLACSRFESGDDPVSVVAPALGYQSESAFSKAFKRVVGCSPRQY 297 Query: 276 R 276 R Sbjct: 298 R 298 >UniRef50_A8LA37 Transcriptional regulator, AraC family n=1 Tax=Frankia sp. EAN1pec RepID=A8LA37_FRASN Length = 214 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 7/199 (3%) Query: 84 STCIVCGTLRLQHSARY-FLTSLPETLFL-APVNHSVEYNWLREAIPFLQQESRSAMPGV 141 +T ++C + + + L LP+ + L A V H + LR A+ L E R G Sbjct: 9 TTELLCASYSFDQTRPHPLLHGLPQVVHLPARVGHHPD---LRAAVDLLGNELRRPRAGT 65 Query: 142 DALCSQICATFFTLAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 +A+ + +R W+ + + + L P + + + PG W+VE L Sbjct: 66 EAIVPALIDMLLLYVLRAWLDEQSGHALTGWVMALNDPAISTALHHVHRHPGRPWSVEDL 125 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A A +SRA+FA+ F + G PLA LT R+ AA++ P+ +AE GY SE + Sbjct: 126 AREAGLSRAAFAKRFATIVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYRSEFA 185 Query: 260 FHKAFVREFGCTPGEYRER 278 F KAF REFG PG YR + Sbjct: 186 FAKAFKREFGAAPGRYRRQ 204 >UniRef50_C6WLA0 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WLA0_ACTMD Length = 295 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 25/252 (9%) Query: 39 IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV------------------ 80 + +H L +G+ L GE L G+VVL P+ H LS + Sbjct: 34 VGFHVLLRGSGWLVPERGEPLPLGVGDVVLAPRRGGHVLSDLPVSEGAAPFSAVGASRGS 93 Query: 81 -DNESTCIVCGTLRLQHSARY-FLTSLPETLFL-APVNHSVEYNWLREAIPFLQQESRSA 137 + + ++CG L S + L +LPE + L A VN + LR A+ L +E R+ Sbjct: 94 GEGGAVDLLCGEYPLDGSRSHPLLEALPEVVHLPARVNGHRD---LRAAVDLLGREVRAG 150 Query: 138 MPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G DAL S + ++R W+ + N ++ L + +V+ + P W +E Sbjct: 151 RSGRDALVSGLLDLVLVYSLRAWL-EDNPDRGWARALRDEGVASVLDALHTSPAEQWRIE 209 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA A MSRA+ A+ F ++G +P+A LT R+ +A+++ LP+ +A+ VGY+S Sbjct: 210 VLADRAGMSRATLARRFTALTGRSPMAYLTWWRMVLASKLLKETELPLHGVAQRVGYSSP 269 Query: 258 SSFHKAFVREFG 269 +F AF R G Sbjct: 270 FAFSHAFKRYNG 281 >UniRef50_B1MI41 Putative transcriptional regulator, AraC family n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MI41_MYCA9 Length = 306 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 8/229 (3%) Query: 58 IFTLRPGNVVLLPQNSAHRLS----HVDNESTC-IVCGTLRLQH-SARYFLTSLPETLFL 111 + L G++VL+ + +AHRLS H + T V G + +A L+ LP + + Sbjct: 78 VCVLAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAERKAADPLLSVLPPAIII 137 Query: 112 APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNIL 171 + WL ++ + E + PG + S+I F AVREW + + E L Sbjct: 138 QAARPG--HEWLPLSLQLILAEILTPSPGSWVMISRILDLLFIHAVREWSSSSHAEPGWL 195 Query: 172 SLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRL 231 + + PRL V+ + H W++ LA A SR++F Q F ++ G P A + + RL Sbjct: 196 TAAMDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTELLGQPPAAYIGERRL 255 Query: 232 QIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 AA + T PV I +VGY S+++F +AF R FG P +R R Sbjct: 256 DRAAHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWRTHHR 304 >UniRef50_C5CZF0 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CZF0_VARPS Length = 333 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 30/273 (10%) Query: 38 VIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL-----SHVDNES-------- 84 ++ +H L +G A + +P L G+V +LP AH L + + + S Sbjct: 51 MVLFHLLVEGRASVRLPGQPRLALEAGDVAILPLGDAHELWNGRGAELTDSSALLPKILE 110 Query: 85 --------------TCIVCGTLRLQHSAR-YFLTSLPETLFLAPVNHSVEYNWLREAIPF 129 T +CG + AR +FL LP LF + W+ + Sbjct: 111 GAVVSERGGGGGPVTKFICGYIGCDRQARRFFLAGLP-PLFKVNIRRGSTGAWIESTLRH 169 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLE 188 L + A G +AL +++ F +R +++++ ++ L+ +G + + Sbjct: 170 LASDREPAGAGRNALLAKLAEALFIETLRRYMSELPRQRTGWLAAARDSAVGRALGAIHR 229 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 P H WTV SLA A MSR FA+ F + G PL + + R+Q+ A++ V+ + Sbjct: 230 EPAHPWTVASLAEQAGMSRTVFAERFTRLLGEAPLGYVARCRMQLGARLLESTDDTVLEV 289 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 A + GY SE++F++AF REF P YR + R+ Sbjct: 290 ALNAGYESEAAFNRAFKREFDVPPARYRMQRRR 322 >UniRef50_Q01Y24 Transcriptional regulator, AraC family n=2 Tax=Acidobacteria RepID=Q01Y24_SOLUE Length = 335 Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 2/192 (1%) Query: 85 TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 T IVCG++ ++ +T L + L + L + + L E PG + + Sbjct: 128 TTIVCGSMSFDRASLRPITQLLPSFILIRAEQARTLA-LHDTMRALSSEMAEQAPGSEIV 186 Query: 145 CSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +++ F +R IA K L + P++G + + + WTVESLA A Sbjct: 187 ANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVESLAEAA 246 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MSR++FA F+++ G TPL +T+ R+Q A Q+ + ++ +A SVGY S ++F KA Sbjct: 247 GMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESGAAFSKA 306 Query: 264 FVREFGCTPGEY 275 F R G PGEY Sbjct: 307 FKRVVGINPGEY 318 >UniRef50_C7Q7L5 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q7L5_CATAD Length = 331 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 113/286 (39%), Gaps = 36/286 (12%) Query: 22 VLGSDWQLP-HGAGELSVIRWHALTQGAAKL-EMPTGEIFTLRPGNVVLL---------- 69 V G DW + H L V + + +G L TGE L PG+V++ Sbjct: 41 VAGGDWAVRLHAPDRLKV---NCVMRGTPVLVRQDTGEQLRLAPGDVIVSDGALPYVLCS 97 Query: 70 ---------------PQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTS-LPETLFLAP 113 P+ R+ H E V G + L L S LP L + Sbjct: 98 DPSIEPHPSGWLATDPRTGFRRIGH--GEDVMCVAGHVDLSRDGGGLLRSALPNLLHIP- 154 Query: 114 VNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT-EKNILS 172 + E LR I L E + PG A I F +R + T L Sbjct: 155 -GDAPEATPLRRLIEQLLDEMTTRRPGAPAAMDHIAQLIFLHVLRISLTTTATLPPGWLR 213 Query: 173 LLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQ 232 L PR+ + M P W +E LA A +SR +FA FR G PL L R+ Sbjct: 214 GLADPRISPALHLMHRDPARPWRLEELAQAAALSRTAFAVRFRATVGVPPLTYLLTWRMS 273 Query: 233 IAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 +AA+ R+T PV V+A VGY SES+F AF R G +P YR R Sbjct: 274 LAARALRRDTTPVAVLAREVGYGSESAFSNAFKRAVGTSPRNYRNR 319 >UniRef50_C7PXM7 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PXM7_CATAD Length = 306 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 132/321 (41%), Gaps = 56/321 (17%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL--PHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MDA+S L+ + G +D C+L L P +G + +H L G E+ G Sbjct: 1 MDAISTLIRMARLDGVVDVRCLLTGSHVLDNPPTSGR---VPFHLLLDGYCTAEI-DGHT 56 Query: 59 FTLRPGNVVLLPQNSAHRL------------------------SHVDNESTCIVCGTLRL 94 LRPG+V++LP+ HR+ S D + + CG Sbjct: 57 IDLRPGDVLVLPRGGEHRVRVTTEAPAVPADLRQGASVATLASSSADASTIDLFCGHYTY 116 Query: 95 QHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 Q A + LP+ L + + + LR ++ E+ PG AL + +C Sbjct: 117 QPGAGELLIAGLPDILHAS--FGTGPDSPLRLLGELMRSEAGLDGPGAGALLASLCEALL 174 Query: 154 TLAVR--------------EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 L +R W A T+ P L AVI ++ P WT+ L Sbjct: 175 ALVLRGDGTGHPATTTLPTPWTAVAVTD---------PGLRAVIDAVVHRPREPWTIAVL 225 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A +A +SRA+ + F +G LT++R+ IAA + + + +AE+VGY S S+ Sbjct: 226 AHLAGVSRATLVRHFSAATGMGVADFLTRIRMTIAADLLTTTDRSLDAVAEAVGYQSTSA 285 Query: 260 FHKAFVREFGCTPGEYRERVR 280 F KAF G TP R VR Sbjct: 286 FGKAFRTATGTTPSRLRRAVR 306 >UniRef50_B1KKM5 Transcriptional regulator, AraC family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKM5_SHEWM Length = 330 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 113/261 (43%), Gaps = 29/261 (11%) Query: 41 WHALTQGAAKL--EMPTGEIFTLRPGNVVLLPQNSAHRLSH------------------- 79 +H + +G+A L E T +F L G+++ P S H++S Sbjct: 62 FHVVIRGSAWLMTEELTSPVF-LSTGDIIAFPTGSPHQISEQPGSQLMSGGEVLEKIRSN 120 Query: 80 ----VDNESTC-IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQE 133 D +S ++CG + Q L +P L + E WL I L E Sbjct: 121 SSPFSDGQSVVTLLCGYFQYQTDISLPLLRDMPSMLHIK-TEEEPELAWLNHLIKTLAYE 179 Query: 134 SRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHA 193 SRS PG + ++ +R + L +L + + + P A Sbjct: 180 SRSLQPGNAVVVDRLTEVLVIQLLRWHMRHQRNTPGYFQALGDDKLSRALILIHQEPSKA 239 Query: 194 WTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVG 253 WTVESL MSR SFA F+ + G TPLA L++ R+ IA + L ++ IAE VG Sbjct: 240 WTVESLGRAVSMSRTSFANRFQSIVGMTPLAYLSQWRMHIAYGLLVEGELSMLSIAEQVG 299 Query: 254 YASESSFHKAFVREFGCTPGE 274 Y SE+SF KAF + G +PG+ Sbjct: 300 YKSEASFGKAFKKIVGISPGK 320 >UniRef50_C5BRT4 Helix-turn-helix-domain containing protein, AraC type n=2 Tax=Gammaproteobacteria RepID=C5BRT4_TERTT Length = 320 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/307 (23%), Positives = 134/307 (43%), Gaps = 35/307 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDW--QLPHGAGELSVIRWHALTQGAAKLEMPTGEIF 59 D L +L G++ L + W ++P G++ +H +TQG L + GE Sbjct: 12 DPLGEILYQLRMDGSLYAQSYLSAPWGVEMPELPGKMM---FHIITQGQCWLHVEGGEPV 68 Query: 60 TLRPGNVVLLPQNSAHRLSHV---------------------------DNESTCIVCGTL 92 LR G++VL+P HR+ ST + C + Sbjct: 69 LLRQGSLVLVPHGRGHRVMDAPGSPVAKLFDLPIRRITDRYEELHYGGGGASTHLTCCVM 128 Query: 93 RLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 + R + LP+ L + + V+ +WL+ + F+ +E+R PG + + + Sbjct: 129 SFDPLTGRQLIPHLPDYLHIDSWDTDVD-SWLQTTLRFIAREAREQKPGGQTIIANLADI 187 Query: 152 FFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 A+R W+ A T L+ L +G+ + + P WTV++LA +SR+ F Sbjct: 188 LVIQAIRAWLDATEETSAGWLAALRDKYIGSALAAIHREPERNWTVDTLAREVGLSRSGF 247 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F ++ G + +T R+Q+A + + +A+ +GY SE++F +AF R G Sbjct: 248 SARFSELVGESAKRYITHWRMQLARSKLLDSGISMGELADQLGYHSEAAFCRAFKRVIGV 307 Query: 271 TPGEYRE 277 +PG ++ Sbjct: 308 SPGSIKK 314 >UniRef50_Q2BP83 AraC-type DNA-binding domain-containing protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP83_9GAMM Length = 306 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 117/264 (44%), Gaps = 24/264 (9%) Query: 39 IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV------------------ 80 + +H + G + L + E L G++V+ P+++ H LS Sbjct: 39 VPFHLVNSGRSWLHLEGQEPRLLSAGDLVMFPRDTTHYLSSESLCPTPALVEETLNNQGD 98 Query: 81 --DNESTCIVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSA 137 D + T + CG + + L LP+ + L + S N R + L E Sbjct: 99 MGDGQITGLACGFFEFESQEAWPILDKLPDAVVLELSDTSRLGN-TRALLQLLIAELEEH 157 Query: 138 MPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 PG + + F +R + + + +L L HPR+G + Q+ P AW++E Sbjct: 158 GPGYLQSVNHLTHVLFIHILRSQLDNIGS--GLLKALFHPRIGLSLSQIHSQPEKAWSLE 215 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA A MSRA+FA F+ ++G T ++ L++ R+ A ++ L + IAE GY SE Sbjct: 216 LLAREAGMSRAAFASEFKALTGKTAMSYLSEWRMLQATELLRSTNLSTIEIAERCGYLSE 275 Query: 258 SSFHKAFVREFGCTPGEYRERVRQ 281 +F KAF + G PG R R+ Sbjct: 276 VAFRKAFKKVTGTAPGAVRSEGRR 299 >UniRef50_Q15UL8 Transcriptional regulator, AraC family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15UL8_PSEA6 Length = 316 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 81/320 (25%), Positives = 128/320 (40%), Gaps = 44/320 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT----- 55 MD L++L + N W + + +H ++ G L +P+ Sbjct: 1 MDVLNQLFATFKVSANVFHNGQYCGSWAI--NTSGTHYMNFHVVSHGTCFLTLPSVKRES 58 Query: 56 --------------GEIFTLRPGNVVLLPQNSAHRLSH-------------------VDN 82 + L G+VVL P++S H +S + Sbjct: 59 EHEGDKHSECDQKQNTVIELVQGDVVLFPRDSEHVISGDLGSSAVVNTAASQNYASGIHP 118 Query: 83 ESTCIVCGTLRLQHSARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 +T +VCG H +T LP + + S + L + L ES+ G Sbjct: 119 SATGLVCGYFSHHHPLVASVTKHLPSVIIIKHQTVSTSASGLNYLLDALLDESKQPNKGS 178 Query: 142 DALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + +I + RE + N +L+ HP+LGA + + P WTVE LA Sbjct: 179 ALIMGRIAEAILAIIFREHLPADN---GMLAATAHPKLGAAMAAIHSEPDKKWTVEMLAQ 235 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 MSRA F +LF+ V +P+ +T+ RL +A +M + E + + A + GY +ESSF Sbjct: 236 RCFMSRAGFNELFKSVLHQSPMEYVTQWRLGLAYRMLADENVTTLHAALASGYENESSFS 295 Query: 262 KAFVREFGCTPGEYRERVRQ 281 KAF R G +PG R Q Sbjct: 296 KAFKRVLGVSPGAVRALSEQ 315 >UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C0Z0_BEUC1 Length = 329 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 8/262 (3%) Query: 20 NCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSH 79 V G+ +L H G +V+R GA E+ TL+ G+V LLP H L Sbjct: 64 TVVDGAGLRLLHVTGGSAVLRSRREDDGAVGPLSDPHEV-TLQAGDVALLPHAGRHELHA 122 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSL-PETLFLAPVN-HSVEYNWLREAIPFLQQESRSA 137 + C++ L L+ S +++L P LF Y L + + +E + Sbjct: 123 ARDGGACVLTAGLTLEASPFDRVSALMPTVLFTCGFRLDDPAYAGL---VALIDREVSAE 179 Query: 138 MPGVDALCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTV 196 P L ++ + A+R W+ + + L+ P LG ++ + PG +W V Sbjct: 180 SPTSSILVDRLIDVVVSAALRAWLERGCGNARAWLAQAHDPHLGRALEAIHAEPGSSWRV 239 Query: 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYAS 256 E LA +AH SR+ FA+ FR G +P +T +R++ A ++ R V +A ++GY S Sbjct: 240 EDLARLAHSSRSQFAERFRSSVGESPARYVTGVRMRRAEELL-RTGRGVSEVAFALGYDS 298 Query: 257 ESSFHKAFVREFGCTPGEYRER 278 + F +AF R G P E+R R Sbjct: 299 DEGFSRAFRRHSGLAPSEWRRR 320 >UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AR01_TSUPA Length = 289 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 6/219 (2%) Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVE 119 L PG+++LL + H S T V G + A L LP + A + + Sbjct: 71 LNPGDLLLLARGDDH--SVRGRGETEWVRGEFDVDSPVADPVLAVLPPVIRCAADDPGSQ 128 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPR 178 WL ++ L E+R PG D + ++I F A+R W A +T + L+ + Sbjct: 129 --WLPLSMDLLLDEARLPRPGGDVMSARILDLLFIHALRHWAATGSTSRPGWLTAAMDQH 186 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 +G + + P WTV LA IA +SR++FA F + G P + RL AA++ Sbjct: 187 IGPALTAIHAHPERQWTVAELARIALLSRSAFAARFTRLLGVAPAGYVADRRLDRAAELL 246 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 LPV + +VGY SE+ F +AF R FG P +R Sbjct: 247 RDSALPVGDVGRTVGYGSEAGFSRAFARRFGVPPRAWRR 285 >UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=D1TH46_9BURK Length = 347 Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 33/277 (11%) Query: 38 VIRWHALTQGA--AKLEMPTGEIFTLRPGNVVLLPQNSAH------RLSHVDNES----- 84 VI +H + +G+ AKL G + G ++++PQ H LS V ++S Sbjct: 48 VISYHLIIEGSCWAKLAGDPGSAIHVHAGELIVVPQGETHIMGSAIDLSPVPSDSLLAGQ 107 Query: 85 -------------------TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLRE 125 T IVCG L + L S LF + WL Sbjct: 108 MATAPGEVMTLSHGGGGAVTRIVCGFLACDDTLNNPLLSALPRLFKIDMRQDPRAAWLES 167 Query: 126 AIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQ 184 ++ E+ + G + +++ F A+R I A + L+ + +G + Sbjct: 168 SLKLAAAEAAESRAGGTIVLARLSELLFVEAIRSCIEALPENQTGWLAGVRDRYVGRALS 227 Query: 185 QMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLP 244 + HAWTVE LA +SR++ AQ F D+ G P+ L + R+QIAA + P Sbjct: 228 LLHSQAAHAWTVEELARKVGLSRSALAQRFTDLLGQPPMQYLARWRMQIAAHELRIGSKP 287 Query: 245 VVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + +AE +GY SE++F +AF REFG P +R+ Q Sbjct: 288 LNAVAEQIGYESEAAFSRAFRREFGMPPAGWRKSKGQ 324 >UniRef50_A7HC12 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC12_ANADF Length = 345 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 116/279 (41%), Gaps = 32/279 (11%) Query: 32 GAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN--------- 82 G L+++ H L +G + +P E L G +VL P+ AH L D+ Sbjct: 66 GGARLAIM--HLLAEGDCWIALPGRERVRLATGELVLFPRGDAHLLGSGDHAAVVPVSAL 123 Query: 83 ------------------ESTCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWL 123 E IVC LR FL LP L L S + W+ Sbjct: 124 LPPAPWTELPVLRHGGGGERARIVCCYLRCDDLLFTPFLEPLPPVLHLRADGGST-HEWV 182 Query: 124 REAIPFLQQESRSAMPGVDALCSQICATFFTLAVR-EWIAQVNTEKNILSLLLHPRLGAV 182 +I ++ ES PG AL ++ F A+R E + T L+ L + Sbjct: 183 SASIRYVIAESTRGGPGSGALVGKLTELLFIEALRREMCSLPETSVGWLAALRDEYVSRA 242 Query: 183 IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 +Q PG AWTVE +A A +SR++ F+ V TP+ LT RLQ+AA + Sbjct: 243 LQAFHARPGRAWTVEGVAREAGLSRSALVARFQRVLAKTPMQYLTTWRLQLAANRLLATS 302 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 V IA +VGY SE + AF R G +P +R R+ Sbjct: 303 ETVAAIAHAVGYGSEVALSHAFKRVTGVSPAAWRRSHRR 341 >UniRef50_Q7MC25 AraC-type DNA-binding domain-containing protein n=10 Tax=Gammaproteobacteria RepID=Q7MC25_VIBVY Length = 300 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 1/225 (0%) Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFL 111 ++ G++ L PG LL S + EST ++CG+ +A L + + + Sbjct: 75 QLNAGDLIFLGPGQNHLLSSQSPEKGKSDLTESTLLLCGSFSFTRTATTPLLDVFPRVTI 134 Query: 112 APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNIL 171 +Y WLR L E S PG + + +++ +R + T L Sbjct: 135 VRDQDLAKYPWLRSTFDQLSSEYLSQGPGSELIVNKLTEIILVELIRINFGREQTSP-FL 193 Query: 172 SLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRL 231 L R+ +Q + + P WT+E++A+ MSRA+FA F + G LT LR+ Sbjct: 194 EALNDKRISRALQLLHDHPETGWTLETVANQIGMSRAAFANRFSSLVGKPMFEYLTNLRM 253 Query: 232 QIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 Q A ++ LP+ IAE VGY SE +F F + G TP +R Sbjct: 254 QKAQELLLESLLPIDEIAEQVGYESERAFTLTFKKHTGTTPKRFR 298 >UniRef50_A7JV94 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JV94_PASHA Length = 274 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 4/234 (1%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF 101 H + QG L T+ ++ P N H L +D+ I C R Sbjct: 38 HFVRQGRFILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNP 97 Query: 102 LTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI 161 LT + + + E L + I E G A+ +CA F R+ + Sbjct: 98 LTHTLHNIVILELAQYPELGVLADQIF---SEVNQKGCGYQAMIHHLCAYFTLKVARQCL 154 Query: 162 AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTT 221 + + +L L +LG V+ + P W VE LA++A MSR+ FA F+ G + Sbjct: 155 EKGYIQTGLLKGLADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVS 214 Query: 222 PLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 P+ LT RL +A + + +PV ++AE VGY+ ++ + F+RE G +P E+ Sbjct: 215 PMDYLTNWRLAVAQHLLQK-GIPVALVAEQVGYSHNAALSRVFMRELGLSPTEW 267 >UniRef50_UPI0001B53B77 AraC family transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B53B77 Length = 317 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 124/292 (42%), Gaps = 34/292 (11%) Query: 15 GTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSA 74 G + +L + W + + ++ I + + G+ L G+ L G+V LLP + Sbjct: 16 GVVYGRALLSAPWGIAFESRSIATI--YVVIAGSYVLVPDGGQALHLAQGDVALLPSGAG 73 Query: 75 H----------------------RLSHVD------NESTCIVCGTLRLQHSARY-FLTSL 105 H LS D T +VCG L+ ++ F+ SL Sbjct: 74 HVVADAPGRPAPTVRELFGADLEELSATDLVIEGEGLETVLVCGAYLLEPVPQHPFVDSL 133 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW-IAQV 164 P+ + + + L A+ L E A G A+ + + FT +R W + Q Sbjct: 134 PDVVHV--TASQMRGTSLAAAVHLLTTEVDQAGRGTPAVVASLLDLLFTYTLRTWFLGQS 191 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 + L P +G + + + PG WTVE+LA + RA F++ F +G TP+ Sbjct: 192 DQLVGWAHALHDPAVGPALALLHDDPGKPWTVETLAHAVGVPRARFSRRFTSTTGHTPME 251 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 L R+ +AA++ + P+ IA VGY SE +F +AF R G PG YR Sbjct: 252 YLGIWRMTVAARLLREDQAPLRQIARKVGYDSEFAFARAFKRIVGQAPGRYR 303 >UniRef50_Q488F1 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q488F1_COLP3 Length = 275 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 16/246 (6%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQH-SARY 100 H L G + G TL +V+ +P S H++ +++ +VC + S Sbjct: 40 HLLKSGVLTIVCEEGHKVTLDKPSVIFMPGPSKHQVIASESDDAELVCADVDFHSGSGAA 99 Query: 101 FLTSLPETLFL-----APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + +LP+ + L PV + +WL E E+ + G + +++ F Sbjct: 100 LVNALPKFICLNIGQHDPVGRTA--HWLFE-------EAFNKQAGQQMIVNKLGDIFLIQ 150 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R I + + +L+ + HP+L A++ + + P WTVE +A A MSRA FA LF+ Sbjct: 151 MLRHVIKEGIVIQGMLAGMAHPQLSALMTALHKRPQEQWTVELMAETALMSRAKFAALFK 210 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 D G P LT LR+ +A + ++ PV +A VGY S+ + F ++ G +P E+ Sbjct: 211 DTIGQAPSDYLTDLRIALAQGLLKKDK-PVSFVANEVGYEHGSALARVFRKKTGLSPKEW 269 Query: 276 RERVRQ 281 + R+ Sbjct: 270 LMKFRK 275 >UniRef50_D2BAU8 AraC family transcriptional regulator n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BAU8_STRRD Length = 327 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 121/271 (44%), Gaps = 31/271 (11%) Query: 42 HALTQGAAKLEMP--TGEIFTLRPGNVVLLPQNSAHRLS--------------------- 78 H + +G +E+P G I LR G++ + P SAHRL+ Sbjct: 44 HYVQEGECTVELPEAAGPI-RLRAGDLAVFPHGSAHRLADRPGRPTVPLSGLLPGRRPGT 102 Query: 79 ----HVDNES--TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQ 132 +D T ++CG L +A L +F+ L + + L Sbjct: 103 VRTVEIDGPGPVTTMLCGGLHYDGAATAPLYRALPAVFVLDRPMLERQPLLADTLRGLTC 162 Query: 133 ESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGH 192 E PG + + F LA+R ++++ + +L L HP + + + Sbjct: 163 EWADGEPGAGLVALRAFELTFVLALRAVLSELTFGEPVLRALRHPAISRALLAVHSRFAE 222 Query: 193 AWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESV 252 WT+ESLA+ A +SR++FA FRD+ G P+ LT R+Q AA++ + TL ++E V Sbjct: 223 PWTLESLAAEAGLSRSAFAATFRDLVGEPPMRHLTGRRMQEAARLLTETTLAQNRVSERV 282 Query: 253 GYASESSFHKAFVREFGCTPGEYRERVRQLA 283 GY S FH AF G TPGEYR R RQ A Sbjct: 283 GYRSGVGFHLAFRTWCGQTPGEYR-RSRQSA 312 >UniRef50_B8ESK8 Transcriptional regulator, AraC family n=8 Tax=Proteobacteria RepID=B8ESK8_METSB Length = 304 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 8/246 (3%) Query: 28 QLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAH-RLSHVDNESTC 86 QL AGE VI +T GA +E + G++VLLP+ RL T Sbjct: 49 QLDIDAGEAHVI---VVTAGALHIESDNQTRAVIDTGDLVLLPRGPGESRLVASHQRVTL 105 Query: 87 IVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 +VC S R + +LP+ + + + + W+ + FL E+ PG + S Sbjct: 106 VVCRFWFDPDSLRSMIFALPQRIHIQRADAA---GWIDGMLRFLMIEAGDIQPGAALMIS 162 Query: 147 QICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 +I +R W+ + T L L R+ ++ + E P W++ +LA + MS Sbjct: 163 RIIDLLVIRVLRSWVHKGQT-SGWLGGLTDARIARSLKAIHEKPMQRWSINALADLVGMS 221 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 R+SF + F + G +PL + RL +A M ++ V I +GY SE++F +A+ + Sbjct: 222 RSSFCERFTALVGRSPLRYQNEWRLALARDMLAKRDARVGEIGLRIGYESEAAFSRAYKK 281 Query: 267 EFGCTP 272 FG +P Sbjct: 282 LFGHSP 287 >UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=Dickeya zeae Ech1591 RepID=C6CFN8_DICZE Length = 307 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 36/309 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDW--QLPHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MD L L+ G + + + W +LP G +L+V HA+ QG A L + G+ Sbjct: 1 MDILQEHLVRARASGGVFARSIAIAPWGLRLP-GTIQLAV---HAMIQGRAWLWLDGGDD 56 Query: 59 -FTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSA-----------------RY 100 LRPG++ L+ H ++H + + C+V R +H+A R+ Sbjct: 57 PIELRPGDLALVRGGPDHFVAH-EPGACCVVPEVFRTEHAADGAEHDPRAAVFLCGAYRF 115 Query: 101 -------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + LP +FL P S N + + L +E A PG + ++ Sbjct: 116 AGDIGAGLVNGLP-PVFLIP---SRMDNPVHGVVELLSRELSQAEPGRQTVLDRLLDVLV 171 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 L +R +A + RL +Q M +WTV+ LA +++MSRA+FA++ Sbjct: 172 VLGLRSGLASSVNAPAWVRGATDARLSLALQAMHGDTSKSWTVDELARMSNMSRATFARV 231 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F++V G TP+ LT R+ +A + + +P++ +AE VGY+S +F AF R G PG Sbjct: 232 FQEVLGNTPMRYLTDWRMTVARDLLRTQDIPLIEVAERVGYSSLYAFVTAFRRHHGQPPG 291 Query: 274 EYRERVRQL 282 ++R+ + L Sbjct: 292 KWRQSGKDL 300 >UniRef50_C6XBB1 Transcriptional regulator, AraC family n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBB1_METSD Length = 274 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 7/239 (2%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF 101 H + G + + G ++ +V+ P+ H L + E+ ++C + L Sbjct: 37 HIVRSGKVTMTVRNGPPQSITQPSVIFFPRTCPHALVP-EGENAELLCAYVDLGAKVGSP 95 Query: 102 LT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 L SLPE + L P++ + + ++ + L +E+ G A ++ F +R Sbjct: 96 LALSLPEAIVL-PMD---DMSLVKPTLELLFREALQESFGRQAALDRLIEYFLIQMLRHV 151 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 +A I + L RL + M E PGH W+++ LA IA MSRA FA FR+ G Sbjct: 152 LAMGQLNGGIFAALADSRLKHAVNAMHERPGHPWSLDELADIAGMSRARFAVNFRETVGV 211 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 TPL LT R+ +A M + P+ +A +VGY S+++ + F + G P E+ ++V Sbjct: 212 TPLDYLTNWRMSVAQSML-KSGRPIKSVAAAVGYQSQAALARVFAKRLGQAPTEWLKQV 269 >UniRef50_A9WHL1 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Chloroflexus RepID=A9WHL1_CHLAA Length = 329 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 130/304 (42%), Gaps = 35/304 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIF 59 MD L+ +L L + ++ LGS W L + +V H L +G + T E Sbjct: 1 MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAVF--HVLHRGNGFFRVAGTPEWT 58 Query: 60 TLRPGNVVLLPQNSAHRLSHV-----------------------DNESTCIVCGTLRLQ- 95 LR G+++LLP H L D S ++CGT + Sbjct: 59 PLREGDLLLLPHGQEHLLLETPDTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEY 118 Query: 96 -HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 H+A F LP+ + + P + + N + + E+ S P + + ++ F Sbjct: 119 VHAASLF-RYLPDVIHI-PYHAARPLN---RVLELMADEAESQRPAKEVVLRRLADILFV 173 Query: 155 LAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 V+ W+ T+ L P +G + M P W V SLA SR++FA Sbjct: 174 QIVQYWVEMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAAR 233 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRE-TLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G P+ LT+ R+QIA+++ + +L V +A VGY SE++F KAF R G P Sbjct: 234 FTALVGEPPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAP 293 Query: 273 GEYR 276 YR Sbjct: 294 TAYR 297 >UniRef50_A3Y9X7 Transcriptional regulator, araC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9X7_9GAMM Length = 310 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/310 (24%), Positives = 126/310 (40%), Gaps = 39/310 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHG--AGELSVIRWHALTQGAAKLEMPTGE- 57 MDAL+ +L ++ SD+ P G E S +H + +G+ L + + Sbjct: 1 MDALTDVL----KTLRLNTQTYFCSDFHAPWGIVMDEASEGMFHVVIEGSCFLNIEQSQT 56 Query: 58 IFTLRPGNVVLLPQNSAH-----------------------------RLSHVDNE-STCI 87 I L G++V P AH R H++ E + Sbjct: 57 IIALNQGDIVAFPSGGAHWISDHQDSPKMPSHFVVDKIRSGESPFKERAKHLNKEIKNTL 116 Query: 88 VCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 +CG+ ++ F+ LP + + ++ E W+ E + L +ESR+ PG + Sbjct: 117 MCGSFSYDTKMKHPFIRDLPCFIHIKSEQNN-EQRWMSELVATLSRESRTPSPGSSLMLD 175 Query: 147 QICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 ++ F +R ++A + N L+ L ++G + + WT+E L MS Sbjct: 176 RLTEVLFIQIIRYFLASQPNKHNYLAALNDQQIGTTLNLIHAEESAHWTIEKLGEEVAMS 235 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 R++F F + G P L R+Q A + IAE GY+SE++F KAF Sbjct: 236 RSAFTDKFSKLVGQAPKTYLLNWRMQKAKTRLESTDDSMYQIAEDAGYSSEAAFSKAFKA 295 Query: 267 EFGCTPGEYR 276 F TPG R Sbjct: 296 FFAETPGFVR 305 >UniRef50_B4VBF5 Transcriptional regulator n=4 Tax=Actinomycetales RepID=B4VBF5_9ACTO Length = 322 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 111/253 (43%), Gaps = 19/253 (7%) Query: 29 LPHGAGEL---SVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNEST 85 LPHG G + S + A +GA + E E + RP R S + Sbjct: 68 LPHGTGHVIADSAVD-EATVRGAVRFEDWRAEERSERP-----------SRQSPAAGAAV 115 Query: 86 CIVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 ++CG RL S + + LP + LA N + LR AI L +E PG Sbjct: 116 EMLCGKYRLDRSRVHPLMAELPRVVHLA--NRVGAHPELRSAIDLLGRELGGQRPGAWIA 173 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + VR + + T ++L P A ++ + P AWT + LA+ A Sbjct: 174 VPNLLDLLLVYMVRSCLDEGAT-GVWPAVLGDPVTAAALRALHADPAAAWTNDRLAAEAG 232 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 +SR + A+ F + G P+A LT RL AA + P+ IA VGYA+ +F AF Sbjct: 233 VSRPTLARRFTALVGRPPMAYLTWWRLTFAATLLRDTADPLAAIARRVGYATPYAFSHAF 292 Query: 265 VREFGCTPGEYRE 277 REFG TPG YR+ Sbjct: 293 NREFGTTPGRYRD 305 >UniRef50_Q21T04 Transcriptional regulator, AraC family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21T04_RHOFD Length = 279 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 6/212 (2%) Query: 65 NVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVEYNWL 123 +++ LP+ +HRL + +VC T++ R + SLP + + E + Sbjct: 62 SLLFLPRPDSHRLIADERAGADMVCATVKFGGGGRNPVNDSLPNVVLVKLA----ELAKV 117 Query: 124 REAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVI 183 +E + + E+ S G A+ +++C +R +A T+ L+ L RL V+ Sbjct: 118 QELLELMFDEAFSDQCGRQAVLNRLCEVLMIRLLRYCMAHGLTQGGTLAGLADKRLAKVL 177 Query: 184 QQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETL 243 + + P A + S+A++A MSRA FA FR+V+ TP L R+ A + R Sbjct: 178 TDIHKDPARARDLASMAALAGMSRARFAARFREVTAETPADYLASWRIMTAQGLLKRGR- 236 Query: 244 PVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + +A+ VGY S S+ +AFVR+ GC+P E+ Sbjct: 237 QLKHVADDVGYGSASALTRAFVRKLGCSPTEW 268 >UniRef50_B8CRW0 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CRW0_SHEPW Length = 311 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 124/298 (41%), Gaps = 27/298 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M +++LL TI +L + W L+ +H ++QG A L + Sbjct: 15 MTDINKLLANFHLNATIFHRSLLCNTWSTDTSGSGLA--SFHLVSQGQAYLYCDDIKALE 72 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC--------------------IVCGTLRLQHSARY 100 L G++V+ P ++ H +S D+ T ++CG + Sbjct: 73 LNAGDLVVFPHDAPHIISSSDDAETAASINSFIAYPMAHKSANQTGLICGYFDFSEDKSH 132 Query: 101 -FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 + LP + L + + L + L +E++ + + + S++ FF +R+ Sbjct: 133 PLICQLPTCMVL---HKHQQQGALAGIVQSLIEEAKLGLLANEVILSRLSEVFFLNLIRK 189 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 T + L P++ V+ + H WTV ++A I SRASFA F+ Sbjct: 190 LSLDEQTNIGLFKALQDPKMNKVLHAINTDLAHHWTVNTMAEIGGYSRASFASYFKSYLE 249 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 TPL LT+LRL A + R V A VGY ++ SF KAF R FG PG R+ Sbjct: 250 LTPLEYLTRLRLSQAKKQL-RAGDSVYKTALDVGYQTDVSFAKAFKRYFGYGPGSSRK 306 >UniRef50_Q0AK28 Transcriptional regulator, AraC family n=1 Tax=Maricaulis maris MCS10 RepID=Q0AK28_MARMM Length = 320 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 30/262 (11%) Query: 44 LTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNES------------------- 84 +T G A L T E L+PG++ LL + +L+ S Sbjct: 54 ITAGTAHLATATDETRLLQPGSLTLLTRGQPMQLASAPGASLTALEDLPVEPVTRRFERV 113 Query: 85 --------TCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESR 135 T ++++ + R LPE++ + + VE WLR + + +E+R Sbjct: 114 FHGGGGAETRFTFALMKIEDPTTRQLFRELPESIEVNGWDALVE-TWLRSTVQLISEEAR 172 Query: 136 SAMPGVDALCSQICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAW 194 PG + L +++ +R W+ E+ L+ L P LG + + P W Sbjct: 173 LMRPGSETLITRLADILVIQLIRRWLEHAGPGERGWLAALHEPGLGRALAAIHTDPAINW 232 Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGY 254 +++SLA IA MSR++F F + T P+ +T+ RL A + + + I+E GY Sbjct: 233 SLDSLAGIAAMSRSAFCARFTTMLDTAPMKYVTRHRLARAREALVQTQDSLADISERYGY 292 Query: 255 ASESSFHKAFVREFGCTPGEYR 276 S+++F +AF + +G PG R Sbjct: 293 GSDAAFSRAFKKYYGMAPGRVR 314 >UniRef50_B1K331 Transcriptional regulator, AraC family n=12 Tax=cellular organisms RepID=B1K331_BURCC Length = 348 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 3/168 (1%) Query: 116 HSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLL 175 +V+ WL E L +E + +PG + +Q+ F +R + + L Sbjct: 155 QAVKVRWLLEK---LVEERAADLPGAQLVSAQLSQLLFIQILRAHLKTSASLTGWLRAFG 211 Query: 176 HPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAA 235 +PR+ ++ M P +W ++ LA+ MSR +FA FR +G PL L + R+++A Sbjct: 212 NPRIAPALRLMYGDPARSWHLDELAAACAMSRTTFASHFRASAGVAPLTYLGEWRMRLAE 271 Query: 236 QMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 + E +PV ++A+S+GY+SES+F AF R G +P YR VR A Sbjct: 272 RRLRDEDIPVALLAQSLGYSSESAFSHAFKRMSGHSPTAYRHVVRTAA 319 >UniRef50_Q39MN2 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. 383 RepID=Q39MN2_BURS3 Length = 199 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 1/177 (0%) Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 L+ LP L L + + WL + F+ E+ S G A+ S++ F +R W Sbjct: 20 LLSVLPPVLVLKGLRER-PFEWLELSCHFILDEALSPRAGAAAMISRLLDVIFVQLLRTW 78 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 LS + R+ + + PG AW+V LA ++++SR++FA F+ V G Sbjct: 79 ATAGAAGHGWLSGAIDSRINPAMSAIHADPGRAWSVSDLAELSNLSRSAFADRFQRVVGQ 138 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 PL+ LT RL AA++ P+ IA VGY SE++F +AF + +P ++R+ Sbjct: 139 APLSYLTTWRLDRAAELLRYSRAPISDIAGRVGYTSEAAFSRAFRGRYEMSPMQWRK 195 >UniRef50_B5ZZ22 Transcriptional regulator, AraC family n=5 Tax=Rhizobiales RepID=B5ZZ22_RHILW Length = 329 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 130/304 (42%), Gaps = 29/304 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS +L G C L W + +L +R+H ++QG + Sbjct: 16 MDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQL--LRFHFVSQGPCWIHTEVEGWQE 73 Query: 61 LRPGNVVLLPQNSAHRLSHV-----DNESTC-------IVCGTLR--LQHSARYFLTSL- 105 L G++VLLPQ AHRL+ D+ C VC +R + ++ F S+ Sbjct: 74 LNDGDLVLLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREGMGANSTLFCGSMA 133 Query: 106 -------PETLFLAPVNHSVEYNWLREAI-PFLQQESRSAMP---GVDALCSQICATFFT 154 P + P+ + + P L S A G + S++ Sbjct: 134 LGAHALHPLIALMPPIIKGCDVAGNDPIVGPLLAAMSAEATQPQMGSATVLSRMADLLAA 193 Query: 155 LAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R W+ + L+ + P +G V+ M PGH WT+ESLA +A SR+ FA+ Sbjct: 194 RLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLAGVAGQSRSIFAER 253 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F + G L +LR+Q+A + + + + +A +GY SE+SF +AF R +PG Sbjct: 254 FSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASFARAFKRVTNVSPG 313 Query: 274 EYRE 277 R Sbjct: 314 IVRR 317 >UniRef50_C1RHR4 DNA-binding domain-containing protein, AraC-type n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RHR4_9CELL Length = 335 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 113/275 (41%), Gaps = 34/275 (12%) Query: 39 IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLS-------------------- 78 + +H +T G + +P + LR G++ L+P H L+ Sbjct: 61 LTFHVVTAGEVHVAVPGADPVLLRAGDLALVPHGRGHVLASDLAAPSLGRVDLLPQDYLT 120 Query: 79 --------HVDNESTCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPF 129 D ++CG L + +AR L LP + + W+ + Sbjct: 121 ETYSVLRHDGDGPRASLLCGVLSVDGPAARPLLDLLPAVVDVP----GESAPWVSRTLEL 176 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEM 189 + E PG +A+ +++ AVR W+ + L L P +GA + + Sbjct: 177 MTAELAHLRPGGEAVLTRLADVVVIQAVRAWLDAQDPATGWLGGLRDPYVGAALAAVHRD 236 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 P H WT+ +LA ++ MSR++FA F V G + +T R+++A +R + +A Sbjct: 237 PAHPWTLAALARVSAMSRSAFAARFTQVVGVPVMQYVTSWRMRVATDRLARGDA-LAHVA 295 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 +VGY S + F + F R G +PG R L P Sbjct: 296 TAVGYESTAGFSRTFSRVTGRSPGSVRRIAGSLGP 330 >UniRef50_D2S4Y3 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D2S4Y3_9ACTO Length = 359 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 32/261 (12%) Query: 41 WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTC-------------- 86 +H +T G LE G L+PG++ L+P H L + Sbjct: 79 FHVVTAGRCVLEA-DGVRSVLQPGDLALVPHGRGHLLRSGPDAPIAGRADLLPQQYLAEH 137 Query: 87 --------------IVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQ 131 +VCG ++ + A + L LP L + WL + + Sbjct: 138 YSVLRLDGGGVPAGMVCGVVQPERPGAAHLLDLLPPVLHVD-GRDGARGGWLPVLLGVIA 196 Query: 132 QESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPG 191 ESR PG +A+ +++ AVR W+ T L L P++G + Q+ PG Sbjct: 197 DESRHDRPGSEAVVTRLADVVVIQAVRAWLDTAATGPGWLRALRDPQVGRAVAQLHREPG 256 Query: 192 HAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAES 251 AWT+ LA A MSR+SFA F +++G + + + R+ +A + E V +A Sbjct: 257 TAWTLTRLAREARMSRSSFAARFTELAGEPAMHYVARWRMHLATVALA-EGARVGELARQ 315 Query: 252 VGYASESSFHKAFVREFGCTP 272 +GY SE++F +A+ R G P Sbjct: 316 LGYESEAAFSRAYKRVVGVPP 336 >UniRef50_Q39N64 Transcriptional regulator, AraC family n=11 Tax=Burkholderiales RepID=Q39N64_BURS3 Length = 333 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 135/308 (43%), Gaps = 31/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LSR + L G ++ C G+ W + + I +HA+ +G A LE P G + Sbjct: 6 DWLSRFMALVTVTGKLEIRCAFGAPWAITYERSPACEIPYHAVLRGRAILENPDDGTVRE 65 Query: 61 LRPGNVVLLPQNSAHRL----------------SHV---DNESTC----IVCGTLRLQHS 97 L G++VLLP S H L HV +N T ++CG + Sbjct: 66 LGGGDLVLLPHGSPHVLHDGSGLPPVPAIKRPGGHVFIGENAGTGERLDMLCGRFVVAPP 125 Query: 98 -ARYFLTSLPETLFLAPVNHSVEYNWLREA------IPFLQQESRSAMPGVDALCSQICA 150 R LP L + S + L + ++ ES G A+ + + A Sbjct: 126 HDRLIRRHLPPDLVVRAATDSRTPDALAATARLTALVELMRAESLEQQLGGLAILNALSA 185 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F LA+R +L+L PRL A I ML+ P WT+ LA++ MSRA+F Sbjct: 186 ALFALALRAISESGQAPTGLLALAGQPRLAAAIVAMLDDPAKPWTLPELAALCSMSRATF 245 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F+ G + +LT +R+ +AA + + ++ VGY S ++F + F R G Sbjct: 246 MRHFQSTLGHSAADLLTDIRMSLAANALRQPSASAEAVSADVGYQSVAAFRRVFTRWAGM 305 Query: 271 TPGEYRER 278 TPG++R + Sbjct: 306 TPGDWRRQ 313 >UniRef50_A0Z8C5 Transcriptional regulator, araC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z8C5_9GAMM Length = 337 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 2/200 (1%) Query: 81 DNESTCIVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 D++ T ++ G L S + FL SLP S + + L +ES + P Sbjct: 134 DDQVTILLSGALSYDSSIDHPFLKSLP-CFIQTSSKSSGDLHRHDVLTNLLIEESFGSYP 192 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G + + F +R + ++ ++ L P +G + + WTVESL Sbjct: 193 GKRLMVDHLAEALFVQLLRVHMRKMKQSNGFMAALSDPHIGVALNLIHTETDQKWTVESL 252 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A M R SF Q F ++ G+TP + LT RL A ++ IAE GYASE++ Sbjct: 253 CKAAAMGRTSFTQKFENMVGSTPKSYLTSTRLMKAKSKLQNSNDSMLSIAEGAGYASEAA 312 Query: 260 FHKAFVREFGCTPGEYRERV 279 F KA + F TPGE R+ V Sbjct: 313 FGKAIKQRFNRTPGELRKIV 332 >UniRef50_Q88IN9 Transcriptional regulator, AraC family n=4 Tax=Pseudomonas RepID=Q88IN9_PSEPK Length = 306 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 6/243 (2%) Query: 34 GELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLR 93 G+ SV H L G + G+ L ++L + H L D + +VC TL+ Sbjct: 63 GQHSVGHAHLLRSGRLAFKDKRGQRIELTEPTLILAVRPQEHHLLATDADEAELVCATLQ 122 Query: 94 LQHSARYFLT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 A LT +LP+ + P+ E L + +L +E+ G D + +++ Sbjct: 123 FDGGANNPLTLALPD-FIIKPLG---ELQGLDGTLDWLFEEAFGDECGRDVILNRLFELM 178 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R IA + +++ L + +L + + + P W+V LA+++ MSRASFA Sbjct: 179 IIQLLRHLIASRSIASGMMAGLANAQLSRALVGIHDEPQRNWSVAELANLSGMSRASFAS 238 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 FR++ G TP L R+ + + RE P+ +IA+ VGY S S+ + F R+ G +P Sbjct: 239 HFREIVGITPADYLANWRISLTQKRL-REGRPIALIADEVGYESPSALARTFRRKVGASP 297 Query: 273 GEY 275 ++ Sbjct: 298 KQW 300 >UniRef50_B2IIY8 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=B2IIY8_BEII9 Length = 313 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 131/307 (42%), Gaps = 27/307 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L L + + G DW + G + I++HA+ G+ + + G+ FT Sbjct: 1 MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHD--GIKFHAVVTGSCWISV-EGDAFT 57 Query: 61 -LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSAR---------------YFLTS 104 + G LLP+ R++ + V L Q + R YF S Sbjct: 58 RVNTGECFLLPRGRPFRIASDPSVEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLS 117 Query: 105 LPET-------LFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 ++ L + LR + ++QE PG + Q+ A+ Sbjct: 118 EGQSELLLNVLPPLLHIRDEPGSATLRWCVERMRQELAEGQPGDFIVAQQLATIVLVQAL 177 Query: 158 REWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R +++ TE+ L L RL A I M P WT+ +LAS+A MSR +FA FR+ Sbjct: 178 RLYLSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFRE 237 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G +P+ L R+ +AA+ + + IA VGY SE SF AF R G P E+ Sbjct: 238 AVGLSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREFS 297 Query: 277 ERVRQLA 283 +Q++ Sbjct: 298 RLQKQIS 304 >UniRef50_B6A5N0 Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B6A5N0_RHILW Length = 301 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 131/303 (43%), Gaps = 34/303 (11%) Query: 1 MDALSRLL-MLNAPQGTIDKNCVLGS-DWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MD L L M + P+ + ++ + G ++L GA I +H + +G A L Sbjct: 1 MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRLDDGA----AIAFHLIRRGGAWLRRDGQAD 56 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDN----------------------ESTCIVCGTLRLQH 96 L G++V+L + H L VD E T I CG + Sbjct: 57 VLLEEGDLVILSGGTPHEL--VDEPETKAEPVECFGKRKFDLADCFERTEIFCGQFQPDV 114 Query: 97 -SARYFLTSLPETLFLAPVNHSVEYN-WLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 ++ +LP + L +H V + + L E S PG + L ++ + Sbjct: 115 VRGQFGSAALPPFVHLK--SHEVAGDAGITGLTTLLTSELDSERPGTELLMERLADSLLV 172 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R AQ LS + +L V + + P WTV+++A A +SRA+FA+ F Sbjct: 173 YVLRSAAAQAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRF 232 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 G PL LT R+ +AA +P+ ++A +GY SE++F +AF + FG PG Sbjct: 233 NKRVGEPPLGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGA 292 Query: 275 YRE 277 YR+ Sbjct: 293 YRK 295 >UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-type DNA-binding domain and DSBH domain n=1 Tax=Idiomarina loihiensis RepID=Q5QTS9_IDILO Length = 307 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 37/274 (13%) Query: 33 AGELSVIRWHALTQGAAKLEMPTGEI--FTLRPGNVVLLPQNSAHRLSHV---------- 80 A E + +H +T G +P + L +++ + ++ +H LS Sbjct: 42 AKEPGKVAFHVVTNGDCWFGLPGSSVEPIKLSASDIIFVNKDVSHFLSKTQIPSDISESD 101 Query: 81 -------DNESTCIVCGTLRLQHSARYFLTSLP---ETLF--LAP---VNHSVEYNWLRE 125 D+E + +VC Y + S P +TLF L P + + ++ L Sbjct: 102 IPKYCQRDHEQSGVVC----------YDVNSAPGANDTLFQLLPPWLILKQADQHQQLSH 151 Query: 126 AIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQ 185 I ++ E+ + PG + S++ +R+ I + + + L+ L +L VI Sbjct: 152 IIELIRAETINQSPGYQTVISRLSDVLSLNLLRQVIDEDESLRGPLAALSDRQLRTVIMA 211 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 ++ PG WTVE LA +A++S ++FA+ +G TP ++ +LRLQ A M S L + Sbjct: 212 VINEPGADWTVERLAELAYLSVSAFAERCIKKTGVTPKKLVDQLRLQRARIMLSSSQLSM 271 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 +IAE +GY S ++F + F + G +P EYR + Sbjct: 272 DLIAEQLGYQSATAFSRFFKKYAGLSPAEYRHQT 305 >UniRef50_B2T994 Transcriptional regulator, AraC family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T994_BURPP Length = 279 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF 101 H L +G ++ + G + ++ P+ AHR + E + C ++R+Q Sbjct: 40 HLLRRGRMRVRLSDGTTLPVSGPCLMYCPRALAHRFEVEEEEEVELTCASVRIQSGFNNP 99 Query: 102 LT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 +T ++P+ + L E + + L E+ + G A +++ +R Sbjct: 100 ITRAIPDIVIL----QCAELPHAKPLLDILVAEAATYQDGRVAALNRLFELVIIQVLRFL 155 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 I+Q +L+ L PR+ ++ + E P AWT+E +AS A MSRA FA FR+V Sbjct: 156 ISQGKASSGLLAGLADPRIALALEAVHEHPESAWTIELMASTAGMSRARFADHFRNVVQL 215 Query: 221 TPLAVLTKLRLQIAAQMF--SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 TPL +T RL +A QM R T +IA VGY S S+ +AF R G +P + + Sbjct: 216 TPLNYVTDWRLTLAQQMLLAGRST---QLIASEVGYESSSALARAFRRRLGFSPVAWLDS 272 Query: 279 VRQL 282 R+L Sbjct: 273 QRKL 276 >UniRef50_Q7UL84 Probable araC family transcription regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UL84_RHOBA Length = 454 Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 19/293 (6%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDW-----QLPHGAGELSV----IRWHALTQGAAKL 51 MD L+ L + ++++ G W +P + ++V + ++A+ G + Sbjct: 14 MDVLADFLSVAGMVAHLEESLSGGKTWVHQVASIPRSSPTVAVAAQRLSFYAVVSGQIRF 73 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRL-QHSARYFLTSLPETLF 110 E +L G+ + + HRL +E T + G + S + +L T+ Sbjct: 74 TSAAAE-HSLNSGDTIFAIEGQEHRL-ESRSEDTRVTTGQIEFTSGSIGLSVLNLASTII 131 Query: 111 LAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW--IAQVNTEK 168 + + S+ +R L E G ++ I F A+R ++ N+E Sbjct: 132 VRSNDESLSSELVRR----LGTEIEEQRGGWKSVSLGIVNALFIAALRSGGNCSKSNSES 187 Query: 169 N-ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLT 227 N L + +GA ++ M E P H WTV LA+ +SR++FA F+ ++G PL LT Sbjct: 188 NGWLRAMADDEIGAALKLMHERPEHRWTVAELANELSVSRSAFAARFKTITGRPPLEYLT 247 Query: 228 KLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 RLQ AA + + + + GY SE++F KAF REFG +PG+ R + + Sbjct: 248 WWRLQRAAARLRTGDVTLTEVTRNSGYQSEAAFGKAFRREFGISPGQLRRQAK 300 >UniRef50_A9GK43 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK43_SORC5 Length = 327 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 8/219 (3%) Query: 72 NSAHRLSHVD-----NESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREA 126 N H + H+D E+T I G + A L +LP + + P ++L E Sbjct: 98 NPTHDVIHIDLGTKGPETTFITGGFVLDDPLATPILATLPPLIRMTPDTEQAVPSFL-EN 156 Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKN-ILSLLLHPRLGAVIQQ 185 I F+ +E + PG + + ++ F +R ++A++ + L L P A + Sbjct: 157 IQFITREIETNRPGSEIVLLRMADVMFIQILRAYLARLPEDGGGFLGALRDPSTAAALGA 216 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 M WTV SLA A +SR+ FA F + G PL LT+LR+Q AA + RE P+ Sbjct: 217 MHRRAEEPWTVASLAKEAGLSRSVFAARFAALVGEPPLGYLTRLRMQKAAVLL-REGAPL 275 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 ++ GY+SE+SF AF + G PG +R + P Sbjct: 276 AKVSRLTGYSSEASFSHAFRQWAGMAPGAWRRHLESSDP 314 >UniRef50_B0U5T8 Transcriptional regulator AraC family n=12 Tax=Proteobacteria RepID=B0U5T8_XYLFM Length = 285 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 10/255 (3%) Query: 25 SDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNES 84 +D+ +P G++ H L GA + P E+ + +++ P+ + R Sbjct: 36 ADFSVPAEGGQV-----HLLRSGAMDVIHPGRELLQVSVPSLLFYPRPMSRRFVADAQCG 90 Query: 85 TCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 +VC L + SA +LP+ + L N + + + L E+ G Sbjct: 91 ADLVCAQLDFEGGSANQVAGALPDVVCLPLEN----IDGAAQVLELLFDEAFGDHCGRRV 146 Query: 144 LCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 L ++ +R + +L+ L HP+L V+ M E P W++E+LA +A Sbjct: 147 LIDRLFEVVLIQMLRYLMETGGVAGGMLAGLSHPKLRKVLVAMHEQPERGWSLEALAYLA 206 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MSR+ FA FR V G TP L R+++A Q + + IA VGY SE++ +A Sbjct: 207 GMSRSVFAGTFRRVVGCTPGVYLQGWRVKLAQQALRQGRQLLKTIAVEVGYGSEAALSRA 266 Query: 264 FVREFGCTPGEYRER 278 F + G TP E+R+R Sbjct: 267 FKAQCGMTPREWRQR 281 >UniRef50_B1KNX2 Transcriptional regulator, AraC family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KNX2_SHEWM Length = 297 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 128/298 (42%), Gaps = 29/298 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M AL+ LL TI ++ W L+ +H ++ G A L + Sbjct: 1 MSALNGLLSSFHLNATIFHRSLVCDPWSTDTSGSGLA--SFHLISSGKAFLFCDDYQAEP 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC--------------------IVCGTLRLQHSARY 100 L G++V+ P +S H +SH ++ T ++CG + + + Sbjct: 59 LTAGDLVIFPHDSPHIISHSPDKQTAKETDGFVAYPFSDNTPHSAGLMCGYFDFKEDSSH 118 Query: 101 -FLTSLPETLFL-APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 + LP + + + N V L I L E D + S++C FF +R Sbjct: 119 PVIAQLPSCILIKSQQNQGV----LASIIESLILEVTLGAQASDIILSRLCEVFFLSLLR 174 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 + A+ N++ + L ++ V+Q + W + SLA++ SRASF F++ Sbjct: 175 QLSAEDNSQMGLFRALQDTKMAKVLQAIDSNLAAPWDLNSLANVGGYSRASFINHFKNYL 234 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TTP L++LRL A + R V+ +A VGY+++ SF KAF R FG PG R Sbjct: 235 DTTPQEYLSQLRLTKAKKQLIRGD-AVLKVALDVGYSNDVSFAKAFKRYFGYGPGVCR 291 >UniRef50_A7HS46 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Alphaproteobacteria RepID=A7HS46_PARL1 Length = 324 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 128/291 (43%), Gaps = 44/291 (15%) Query: 30 PHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAH-------------- 75 P G ++I +H + +G L++ G ++LLPQN H Sbjct: 40 PFGYVPRNLIAYHYVEEGELLLQLDGQPDLKAGRGEILLLPQNHPHILASGPGIAAAHSH 99 Query: 76 ------------RLSHVDNES-TCIVCGTLRLQHSARYFLTSLPETLFL-APVNHS---V 118 R+ H + T IVCG L + L+ LP L L P +H+ + Sbjct: 100 DLVLPAPDGGLARIVHGGGGARTRIVCGFLGNETPGDTLLSFLPPVLRLDVPEDHTGQWI 159 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHP 177 E + ++ RSA+ + ++ F AV +A + EK L+ L P Sbjct: 160 ESTFRFASVALAGGGDRSAV-----VLGRLAELLFEEAVHRHVASLPEGEKGWLAGLRDP 214 Query: 178 RLG---AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 +G A++ L+ P WT ++LA+ +SR++FA F + G P+ L K R+Q+A Sbjct: 215 VIGRALALLHGRLDRP---WTTDALAAEVGLSRSAFASRFTALVGDPPMRYLGKWRMQLA 271 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR-ERVRQLAP 284 A+ S V IA GY SE++F++AF R FG P +R E RQ P Sbjct: 272 ARRLSDTPDSVARIAFDAGYESEAAFNRAFKRSFGSPPATWRKENTRQGDP 322 >UniRef50_A6VY86 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VY86_MARMS Length = 308 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 123/271 (45%), Gaps = 35/271 (12%) Query: 39 IRWHALTQGAAKLEMPTG-EIFTLRPGNVVLLPQNSAHRLSHVDNEST----CIVCGTLR 93 I + L +G+A L P+ E L G+V LL ++ ++L D+E + C+ LR Sbjct: 37 INFVLLVRGSAILTTPSSSEAIALSSGDVFLLMGDAPYQL--FDHEKSTLIDCVEVERLR 94 Query: 94 LQHS-----------------------ARYFLTSLPETLFLA-PVNHSVEYNWLREAIPF 129 +S A+ L LPE L L S+ + + I Sbjct: 95 RGNSIEIGGGGSVTSFISASFDLHAIEAQPLLHVLPELLHLKLDQRRSLAF---QSVIEM 151 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLE 188 L E+ S G +AL S++ F A+R + Q + LS + L ++ M Sbjct: 152 LALETESPGLGSEALVSRLFELLFVHAIRAYSMQPGGPTQGWLSAFANRNLRQALEAMHR 211 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 P WTVESLA A MSR+SFA F+ V G +PL LT+ R+ A ++ L + I Sbjct: 212 APEQVWTVESLAHTAGMSRSSFAACFKAVVGQSPLDYLTRWRIYCATRLLQHGNLTLSEI 271 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERV 279 + VGY S S+F + FVR TPG +R+ + Sbjct: 272 SSQVGYESVSAFSRVFVRITAKTPGAFRKSI 302 >UniRef50_A0NP18 AraC-type DNA-binding domain-containing protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NP18_9RHOB Length = 266 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 5/195 (2%) Query: 82 NESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 ++ T +V + + R +++LP+ + + E +L + L +E+ G Sbjct: 73 SDETPLVAARITISGVGRQLISALPDCISV----QMTEDPFLSAVVTPLIEEATMPRCGG 128 Query: 142 DALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 A ++C +R + + + +L+ L +PR+ A + + E+PG WT+E LA Sbjct: 129 QAAFQRLCEVVVIRLLRHAMEEGKADTGLLNGLANPRIAAALVAIHEVPGEPWTLEKLAE 188 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 A MSR FA F+++ GTTP+ L+ RL IA V +A G+AS ++F Sbjct: 189 TAGMSRTQFAVTFKELVGTTPMGYLSNWRLDIARSELE-TGRQVKAVASLCGFASPAAFS 247 Query: 262 KAFVREFGCTPGEYR 276 +AF R FG +P + R Sbjct: 248 RAFSRRFGYSPKQKR 262 >UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QE65_PSYCK Length = 311 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 66/111 (59%) Query: 171 LSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLR 230 L + P L + M E P W++ LA +A MSR+SFAQ F+DV G PL L R Sbjct: 197 LKAMKDPFLTKALVAMHENPSQNWSIHELAEVAGMSRSSFAQRFKDVVGMPPLTYLIDYR 256 Query: 231 LQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 L++AA+ + + I+E VGYAS+S+F +AF R +G +P YR++ ++ Sbjct: 257 LRLAARYLRLQQNSISRISELVGYASDSTFSQAFKRVYGISPKAYRQQYQK 307 >UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B4SR55_STRM5 Length = 277 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 6/220 (2%) Query: 65 NVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTS-LPETLFLAPVNHSVEYNWL 123 +++L P+ + HR S + C L + +++ LP+ + L P+ + Sbjct: 62 SLLLYPRPTPHRFSTDPQHGADMACANLHFEGGRLNPISAALPDFICL-PL---ADLYGG 117 Query: 124 REAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVI 183 A+ L +E+ G A+ +++ +R+ + + + L HPRL + Sbjct: 118 HAALELLFEEAFEQRCGRAAMVNRLFEVVMIQVLRQLMEGGEMRGGLFAGLGHPRLRLAL 177 Query: 184 QQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETL 243 M E P AWT+E LA +A MSR+ FA FR+ GTTP L R+ +A Q R+ Sbjct: 178 VAMHESPAQAWTLEDLADVAGMSRSVFAASFREAMGTTPGQYLQGWRVGLAQQAL-RQGR 236 Query: 244 PVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 P+ IA+ VGY SE++ +AF G +P ++R + R A Sbjct: 237 PLKRIADDVGYGSEAALSRAFKAHTGQSPRQWRGQARATA 276 >UniRef50_D2PNB5 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PNB5_9ACTO Length = 337 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%) Query: 123 LREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAV 182 L + I L E A G + + + +R Q + L L +GA Sbjct: 149 LGQLIDLLATEVGIAAAGGPLVQNHLAQILLVHMLRAHAGQTDRPTGWLGALNEDGIGAA 208 Query: 183 IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 ++ + H+WT++ LA I+HMSR++FAQ F+ G PL L + R+ +A +R+T Sbjct: 209 LRALHADVAHSWTLKELAEISHMSRSAFAQAFKSHVGVPPLEYLIQWRMSLARDALARDT 268 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 L + +A + GY SES+F AF R G +P ++R + RQ Sbjct: 269 LSISELARATGYLSESAFSTAFRRVVGSSPAQFRNQARQ 307 >UniRef50_A4Z2A2 Putative transcriptional regulator, AraC/XylS family n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4Z2A2_BRASO Length = 269 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 94/232 (40%), Gaps = 6/232 (2%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHS-ARY 100 H G L P + L ++ P+ HR +VC T+ L + Sbjct: 36 HLFKGGVLTLTQPGADDLALHEPMLLFFPRGRTHRFVVDPARGADLVCATVELGGAEGNP 95 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 LPE + + H L L E + G A ++ L VR Sbjct: 96 IGEGLPELIVMPIAGHPT----LAPVCDLLMAEGFADDGGRQAALDRLFDYLLILIVRHV 151 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 +A +L+ L PRL + + + P W+++ LA IA MSR FA FR G Sbjct: 152 VAHGGVASGVLAGLADPRLAKALTAIHDAPARPWSLDDLADIAGMSRTRFADAFRTRVGR 211 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 TP+ LT R+ +A Q+ +R PV +A VGY S ++F + F + G P Sbjct: 212 TPIEYLTLWRMALARQLLARGR-PVKSVASQVGYDSAAAFSRVFSKVSGRPP 262 >UniRef50_D2PPT2 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D2PPT2_9ACTO Length = 315 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 128/310 (41%), Gaps = 35/310 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L + +GT+ W L E + +A+T G A L +P E Sbjct: 1 MDLLADVLAVAGVRGTLGARIEAADPWGLTWRGVEDAAF--YAVTAGTAWLSVPGREPLQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-----------ESTCIVCGTLRLQHS--------ARY- 100 L PG+VVLLP H +S E G +R A Y Sbjct: 59 LLPGDVVLLPTGPDHAISSAPGVWAPDCDPSAAEHARRTGGVIRFGEGEVRTHLLVAAYA 118 Query: 101 --------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 LT LPE + L +H L + + L +E + ++ Sbjct: 119 HDPAVSTQMLTLLPEVVHLRG-DHG--GTCLDDTLRVLARELAYPQAASSVVIDKLADIL 175 Query: 153 FTLAVREWIAQV--NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 +R W+A T+ + L++L P L + ++ + P WT E LAS +SR++ Sbjct: 176 LIQLLRVWLAGRPEETKHSWLAVLDDPLLTEALTKLHQDPARPWTTELLASELTISRSTL 235 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 A+ F V G +P + LT+ R+ +AA+ + IA SVGY S +F +AF R G Sbjct: 236 ARRFLAVIGQSPGSYLTQWRMDLAARRLRDSDDTLESIARSVGYTSVYAFSRAFSRARGV 295 Query: 271 TPGEYRERVR 280 PG YR R Sbjct: 296 PPGRYRITAR 305 >UniRef50_Q0HZJ9 Transcriptional regulator, AraC family n=13 Tax=Gammaproteobacteria RepID=Q0HZJ9_SHESR Length = 281 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 14/285 (4%) Query: 1 MDALSRLLMLNAPQGTI--DKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MDALS L+ AP+ ++ N ++ + G+L H L +G L + Sbjct: 1 MDALSSLIQHAAPKASLFFSGNLCQSAESEEHANGGQL-----HLLRRGELGLHQTGSAV 55 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 T+ +++ P+ HRL + +VC L + S +LP+ L + P+ Sbjct: 56 QTISEPTLIVYPRGRHHRLQPLHFSGCDLVCARLTFRDSP--LFRALPDALII-PLT--- 109 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 + L I L E+ S +A+ + + L +R + E +L+ + P+ Sbjct: 110 KLEGLAPTINLLFDEAFSQRYAHNAVVASLLDLLLLLLLRHMVEHNLCESGLLAAMTDPK 169 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 L I+ + P WT+ LA +A MSRA FA F V G PL+ +T+ RL +A Q+ Sbjct: 170 LAKAIEAIHASPDTPWTIAELAKLAGMSRAQFAARFHQVIGQPPLSYVTESRLLLAQQLL 229 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 PV IA VGY+ +F +AF R+FG TP + ++ + + Sbjct: 230 LAGQ-PVKFIALEVGYSGGVAFSRAFERQFGLTPTRWLQQQKSMG 273 >UniRef50_A6G0H9 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G0H9_9DELT Length = 321 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 32/254 (12%) Query: 55 TGEIFTLRPGNVVLLPQNSAHRL-----------SHVDNEST---CIV------------ 88 GE L PG+ LL Q AH L S ++ +S CIV Sbjct: 63 AGERVALGPGDFALLAQGDAHELASGKRTPVYPLSELEWDSVLGRCIVRSGGAGAVTHLL 122 Query: 89 CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 G L + +A L +LP L L+ +WL L E+ G + + S++ Sbjct: 123 TGGLDFELNA--LLPALPPVLSLSAEQAP---DWLAGLSALLVDEAAQPGAGSELVLSRL 177 Query: 149 CATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 A+REW+ + E +L L P + + + P WTV SLA +SR Sbjct: 178 AELLAVGAIREWLDGGDEESPGLLRALRDPPIRRSLDLLHRDPREPWTVASLAKAVGLSR 237 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 ++FA F+ G +P+ T+ R+ A Q E V +A+++GYAS ++F +AF Sbjct: 238 SAFAARFQACLGVSPMRYYTRWRMGHAEQWLRDEQRSVEEVADALGYASRAAFTRAFKSA 297 Query: 268 FGCTPGEYRERVRQ 281 G +PG+ R R R+ Sbjct: 298 LGHSPGQARRRARE 311 >UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=Burkholderia RepID=Q397S2_BURS3 Length = 322 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 125/310 (40%), Gaps = 32/310 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPH----GAGELSVIR---WHALTQGAAKLEM 53 MD LS +L L P+ + DW G +V+R W + A + Sbjct: 1 MDPLSDVLTLLKPRSQFYASLDAAGDWSFSFPANPGIKFTAVVRGSCWGIVDDLAEPVRF 60 Query: 54 PTGEIFTLRPGNVVLL-------PQNSAHRLSHVDNESTCIVCG-----------TLRLQ 95 G+ F L G +L P + + + + G + Sbjct: 61 NPGDCFLLNSGRRFVLSSDPALPPADCQPVMDAAARDGVAVWNGGGEVLLISGRFDVSAS 120 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 H+A F T LP + + E LR ++ L +E R PG + + + Sbjct: 121 HAAPLFDT-LPAIVNVPSATGHAEV--LRWSLEQLAEEVRQERPGSALMATHLVHCMLVQ 177 Query: 156 AVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R + N L ++GA I+ + P H WT+ LA IA MSR+ FAQ F Sbjct: 178 VLRLHLETSTNLSPGWFLALSDRQIGAAIRAIHADPAHPWTLAELAKIAGMSRSGFAQRF 237 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 +++ G T + +T+ R+ AA + V IA S+GY SES+F AF R C+P + Sbjct: 238 KELEGGTAIGYVTRWRMMTAANLLRDGEQSVSSIAFSLGYESESAFSTAFKRTMSCSPLQ 297 Query: 275 YRERVRQLAP 284 YR RQ P Sbjct: 298 YR---RQSTP 304 >UniRef50_Q392E1 Transcriptional regulator, AraC family n=32 Tax=Bacteria RepID=Q392E1_BURS3 Length = 349 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 44/278 (15%) Query: 40 RWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTC---------IVCG 90 ++H + +G L +G+ L G+ +LLP H L D ++ C +C Sbjct: 66 QFHFVGRGPVLLRDASGDTMRLEAGDAILLPHGGMHALVS-DPDAPCREINGFEVAKICD 124 Query: 91 TLRLQHSA-------------------------------RYFLTSLPETLFLAPVNHSVE 119 T+ SA + + ++PE + + + Sbjct: 125 TVASVASAGVSPASCATTEPGAGDALIFSACMELDLGGMQPLVGTMPEFMHVGTL--LAR 182 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI-AQVNTEKNILSLLLHPR 178 Y +R + +++E+ SA G + +++ VR W+ + L P+ Sbjct: 183 YPEIRPMLDAMEREACSARAGFAGILARLADVVAAFIVRGWVECGCGDATGWVQALREPK 242 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 LG I + PG W+V LA+ A +SR+ FA+ F +G TP+ LT+LR+++AAQ Sbjct: 243 LGRAIVALHRDPGRNWSVAELATEAGVSRSVFAERFLAATGMTPVRYLTELRMRLAAQWI 302 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +R+ + +A +GY S ++F +AF R G PG R Sbjct: 303 TRDHETIEAVAYRLGYGSLAAFSRAFKRVVGKPPGAVR 340 >UniRef50_C1ACW1 AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACW1_GEMAT Length = 335 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 119/289 (41%), Gaps = 54/289 (18%) Query: 41 WHALTQGAAKLEMPTGEI----FTLRPGNVVLLPQNSAHRLSHVDNE------------- 83 ++ L +G+A LE+ G+ L G+VVLLP +H L ++ Sbjct: 42 FYLLARGSAWLELTGGDTAIAPVALSAGDVVLLPHGGSHVLRDAEHSMAVAHEVGANSCP 101 Query: 84 ---------------STCIVCGTLRLQHSAR-YFLTSLPETLFLAPVNHSVEYNWLREAI 127 +T V G R R L +LP L +A + + L I Sbjct: 102 RPTTMETIRMGGGGTATTFVAGAFRFGAEGRGILLETLPPVLHVAAGDADMGAA-LAATI 160 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI---------------LS 172 + ES + PG L +++ A+R V+T + L Sbjct: 161 QLILAESANPAPGGALLSTRLAEILLVQALR-----VHTRRTYEANAAASDHTAHAQGLC 215 Query: 173 LLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQ 232 L P +GA ++ M P WTV SLA SR++FA F ++ G +PL LT+ R+ Sbjct: 216 ALADPHIGAALRLMHARPADTWTVASLAHEVGQSRSAFAARFAELVGESPLQYLTRWRMT 275 Query: 233 IAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 AA+ + V IA+ VGY + ++F KAF R G PG YR RQ Sbjct: 276 QAAEWLRDRSDSVPAIAQRVGYGNAAAFMKAFTRVQGQGPGAYRRAHRQ 324 >UniRef50_Q0S0T6 Transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S0T6_RHOSR Length = 294 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 74/143 (51%) Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G +CS I T + A+R W + L + P + + + E PG WTV++L Sbjct: 147 GDAVVCSLISTTIVSSAIRLWAELGCAPERWLHQVSDPFIARALDAIHESPGDPWTVQNL 206 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A +A MSR++FA F + G TP + LT +R++ + + R+ L + A +GY SE+ Sbjct: 207 AQVATMSRSAFAVRFTTLVGQTPASYLTDVRMETSKTLLIRDGLSIAETAHRLGYESEAG 266 Query: 260 FHKAFVREFGCTPGEYRERVRQL 282 F +AF R G P +R + R L Sbjct: 267 FRRAFRRHTGSAPAAWRGQQRSL 289 >UniRef50_A7HFH7 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFH7_ANADF Length = 327 Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 34/265 (12%) Query: 39 IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAH----------------------- 75 +R+H + +G + E L G+VVLLP +AH Sbjct: 58 VRFHFVVEGGCWILSAAREPIRLDAGDVVLLPHGTAHVMADRPGRRPLPLAEVAPHLIGN 117 Query: 76 ---RLSHVDN-ESTCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFL 130 R++H + IVC T+ +A L LP L + L + + + Sbjct: 118 ASYRIAHGGGGPRSLIVCCTIAFDGPTANPLLEMLPPVLLVR--RAETRDPMLSQLLEMM 175 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI---LSLLLHPRLGAVIQQML 187 E G + +++ T +R WI + + N+ L+ + P++G + ++ Sbjct: 176 AGEVMERRIGSVTIMARLADIVMTSIIRSWI-EGQGDSNVSGWLAGVRDPQIGLALARIH 234 Query: 188 EMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 PGH WTVE+LA+ A MSR+SFAQ F + +P L + R+++AA ++ V Sbjct: 235 RNPGHPWTVETLAAAAGMSRSSFAQRFVQLLNVSPARYLLQWRMRLAATWLRSGSMTVAE 294 Query: 248 IAESVGYASESSFHKAFVREFGCTP 272 A VGY S++ F +AF R G P Sbjct: 295 AAAQVGYDSDAGFSRAFKRAMGLPP 319 >UniRef50_Q07PU3 Transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07PU3_RHOP5 Length = 344 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 117/274 (42%), Gaps = 30/274 (10%) Query: 34 GELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLR 93 G VI++H + +G+ L G+++ PQ +AH LS G R Sbjct: 46 GAQHVIQYHVMVEGSCFGAWADAPGVRLDEGDIIAFPQGAAHTLSSEPGMRAAPDLGMYR 105 Query: 94 ------LQHSARYFLTSLPETLFLAPVN--HSVEYNWLREAIPFLQQESRSAMPGVDALC 145 L H R + L + +N L A+P + RSA PG +L Sbjct: 106 QAGAGVLPHCVRIGEGDRTDARILCGFMGCDARPFNPLIAALPPVLHLRRSAQPGHCSLP 165 Query: 146 SQICAT---------------------FFTLAVREWIAQVNTEK-NILSLLLHPRLGAVI 183 I A F A+R ++ ++ E+ L+ L +G V+ Sbjct: 166 HLISAARAEVEGRRVGGEGVFARLGELLFVEAIRCYVETLDPEQTGWLAGLKDRHVGQVL 225 Query: 184 QQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETL 243 + P WT++SLA A ++R+S A+ F + G P+ LT+ R+Q+AA + Sbjct: 226 NLIHADPASDWTLDSLAREAGLARSSLAERFTQLIGLPPMQYLTRWRMQMAANLLVAGRE 285 Query: 244 PVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 P+ IAE+VGY SE+ F +AF R G P +R+ Sbjct: 286 PIGRIAEAVGYDSEAGFSRAFRRMVGSPPASWRK 319 >UniRef50_C1YFP1 DNA-binding domain-containing protein, AraC-type n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YFP1_NOCDA Length = 345 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 6/179 (3%) Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 L +LP TL L SV WL A L SR +PG AL ++ ++ W Sbjct: 154 LLRTLPRTLVLTEDAESV--FWLEAARDAL---SRRHLPGGQALVDRVVDMGLVCSLACW 208 Query: 161 IAQVNTEKNI-LSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 Q + + P G ++ + P WTV +LA+ A +SRA FA+ F +V G Sbjct: 209 FEQEGADAPAWYRGAVDPVTGPALEAVHRRPHEPWTVGALAARAGVSRALFAKRFTEVVG 268 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 +PL LT+ R+ A ++ S L V +A +VGYA SSF AF R G +P E+R R Sbjct: 269 QSPLGYLTEWRMYTAEELLSDPDLSVAKVAGAVGYADPSSFSTAFKRLRGLSPREFRLR 327 >UniRef50_B5WHE2 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WHE2_9BURK Length = 321 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 128/303 (42%), Gaps = 27/303 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAA---------KL 51 MD LS +L L + + DW + GA + I++HA+ +G + Sbjct: 1 MDPLSEVLSLVKLRSYLSGGFDANGDWAVQFGAHD--GIKFHAVLRGQCWVLVEGVPDPV 58 Query: 52 EMPTGEIFTLRPG-------NVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF-LT 103 ++ GE F L G ++ + P + L V + G YF L Sbjct: 59 KVSEGECFLLARGKPFRLASDLAVEPVDVRTLLPQVHDGRVVTYNGGGEFLSIGGYFTLA 118 Query: 104 SLPETLFLA---PVNHSVE---YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 P L L+ P+ H E +R + ++ E A PG + Q+ A+ Sbjct: 119 DGPADLLLSMLPPLVHVREEPNRATVRWYVERMRHELSDAQPGDFIVARQLATLVLIEAL 178 Query: 158 REWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R ++ E L L R+ A I M PG WT++S+A A MSR +FA F++ Sbjct: 179 RLHLSNERRESVGWLFALSDKRMRAAIDAMHASPGRRWTLQSMAEQAAMSRTTFALRFKE 238 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY- 275 G +P+ LT+ R+ +AA + V I ++GY SE SF AF R C+P Y Sbjct: 239 TVGLSPMEYLTRWRMMLAADRLTHSRDSVSEIGLALGYESEKSFSTAFKRVMNCSPRRYA 298 Query: 276 RER 278 R+R Sbjct: 299 RQR 301 >UniRef50_A6VZ04 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZ04_MARMS Length = 328 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 30/266 (11%) Query: 41 WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVD----------------NES 84 +H + QG+A L +G + L G+ VL+P H L D + + Sbjct: 56 FHFIGQGSAFLRTRSGAVHQLACGDAVLMPCAGTHDLYSEDGVPLVSINAFEKVQLCDAT 115 Query: 85 TCIVCGTLRLQHSARYFLTSLP---ETLFLAPVNHSVEYNWLREAIP-----------FL 130 + I + S F+ S + +L P+ H E +P + Sbjct: 116 SEISACNAEICRSKDNFIFSCAMEFDLGWLHPLAHLKPEVMHIETVPDYDPQIPAILDVM 175 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMP 190 +E ++ PG + +++ +R W+ + + P+L V+ + P Sbjct: 176 TKELKAKRPGYSVILTRLADVVAAAILRRWVEIGCNVCGWVEAMRDPKLAQVLSALHHEP 235 Query: 191 GHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAE 250 G W+V +AS +SR+ FA+ F +++ +TP L LR+++A+Q S++ L + IA+ Sbjct: 236 GRQWSVADMASEMGVSRSVFAERFTELTHSTPQQYLGNLRMRLASQWISQDNLSLDEIAD 295 Query: 251 SVGYASESSFHKAFVREFGCTPGEYR 276 +GY S +SF +AF R G +PG R Sbjct: 296 RLGYGSAASFSRAFKRMTGISPGAVR 321 >UniRef50_B0RCB3 Putative AraC-family transcriptional regulator n=1 Tax=Clavibacter michiganensis subsp. sepedonicus RepID=B0RCB3_CLAMS Length = 324 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 9/205 (4%) Query: 81 DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNH----SVEYNWLREAIPFLQQESRS 136 D + ++ G + L R LTS+ L PV H S +R + + +E + Sbjct: 106 DPHADVLIGGRVDLDPVGRELLTSV-----LPPVAHIDRRSPVGADVRAHVQRISRELAA 160 Query: 137 AMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTV 196 G Q VR + + L LL RL + + P AW++ Sbjct: 161 DRVGSAFAIRQYGQLLVLDIVRASMLDPDVPAGWLRLLADERLRPALAVIHAQPARAWSL 220 Query: 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYAS 256 +SLA + MSR+SFAQ FR+V+GTTPLA L + R+ +A + V +A ++GY S Sbjct: 221 DSLARASAMSRSSFAQRFREVAGTTPLAYLIEWRMLLARRELRSGDRRVGELAFALGYGS 280 Query: 257 ESSFHKAFVREFGCTPGEYRERVRQ 281 ES+F AF R G P YR R+R+ Sbjct: 281 ESAFSSAFKRHTGEAPVTYRTRIRR 305 >UniRef50_A6SWJ9 Transcriptional regulator, AraC family n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWJ9_JANMA Length = 332 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 11/227 (4%) Query: 53 MPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCI-VCGTLRLQHSARYFLTSLPETLFL 111 MP EI G ++ P ++ R E I +CG R + A L S T + Sbjct: 96 MPIMEILD---GRTMVFPPDAIRRYEAGTGEPELIMICGYFRALYGASMNLFSSLATPIV 152 Query: 112 APVNHSVEYNW-LREAIP-FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKN 169 + S + ++ L+ A+ + QE G+ A+ + + L +R + +N Sbjct: 153 EQFDPSDQLDYKLKSALAELVAQEV-----GMGAMTATLLKQVLVLLLRRSLCSINLWVE 207 Query: 170 ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKL 229 S+L P + M+ PG +V+SLA A +SR++F F ++ +P+A L ++ Sbjct: 208 RFSVLSDPHIAHAFADMVTQPGAPHSVKSLAQKACLSRSAFMARFTNLFEQSPMAALREI 267 Query: 230 RLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 R++ AA +FS E+L V +A VGY + SSF +AF + +GC+P +YR Sbjct: 268 RMRQAAILFSNESLSVDQVARIVGYDNRSSFFRAFRKTYGCSPSDYR 314 >UniRef50_D2PPT5 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPT5_9ACTO Length = 296 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 L LP + + P +H LR+ +L+Q + M G + ++ A+R+W Sbjct: 124 LLRDLPRAVVV-PADHDCAP--LRD---YLEQRIAAGMHGRRVVLDRLIDWLLICALRDW 177 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 Q +T +G V+Q + + P WT+ SLA +A +SR + A+ F D+ G Sbjct: 178 FEQNSTP--WYRAAGDATVGPVLQALHDAPAAPWTLASLAGVAGVSRTTLARRFTDLIGE 235 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 PL LT+LR+ +A Q+ + V +A VGYA SF AF RE G +P Y Sbjct: 236 PPLTYLTELRMTLATQLLAEPDATVARVARRVGYADAFSFSAAFKRERGVSPSTY 290 >UniRef50_B3PSX8 Probable transcriptional regulator protein, AraC family n=3 Tax=Rhizobium RepID=B3PSX8_RHIE6 Length = 326 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 131/310 (42%), Gaps = 40/310 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS +L G C L W + +L +R+H +++G + L Sbjct: 15 DALSEILRDFRLSGVNYGRCELRHPWSIAFAQQQL--LRFHFVSEGPCWIHTEAQGWQEL 72 Query: 62 RPGNVVLLPQNSAHRLSHV-----DNESTCIV----------------------CGTLRL 94 + G++VLLPQ HRL+ D+ +C V CG++ L Sbjct: 73 QDGDLVLLPQGVEHRLASKPDVVGDSLKSCQVTKLGGNVCEVVQEGTGATSTLFCGSMAL 132 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAI-PFL---QQESRSAMPGVDALCSQICA 150 +A L +L + P+ + + P L E+ G + S++ Sbjct: 133 GANALNPLIAL-----MPPIIKGCDVAGNDPIVGPLLAAMTAEASQPQIGSATVLSRMAD 187 Query: 151 TFFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 +R W+ + L+ + P +G + M PGH WT+E+LA +A SR+ Sbjct: 188 VLVARLIRCWVNCSGASTSGWLAAIRDPHIGRALAAMHRDPGHDWTLETLAGVAGQSRSI 247 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 FA+ F + G L +LR+Q+A ++ + + V +A +GY SE+SF +AF R Sbjct: 248 FAERFSAILGEGAARYLARLRMQLARELLG-QNMSVAAVASQLGYESEASFARAFKRITS 306 Query: 270 CTPGEYRERV 279 +PG R + Sbjct: 307 VSPGVVRRTI 316 >UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC type n=9 Tax=Bacteria RepID=A7HAQ8_ANADF Length = 356 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 126/287 (43%), Gaps = 52/287 (18%) Query: 38 VIRWHALTQGAAKLEMPTGEIFTLRP-----GNVVLLPQNSAHRLS-------------- 78 VI +HA+T+G G I RP G+V++ PQ AH LS Sbjct: 73 VIEYHAVTRGGC-----WGGIVGERPARLDAGDVIVFPQGDAHVLSSEPGLRAPPDLATY 127 Query: 79 ----------HV-----DNESTCIVCGTLRLQHSARYF---LTSLPETLF--LAPVNHSV 118 H+ + I+CG L AR F L +LP L LA S Sbjct: 128 ASLLDGPPPVHIPLGGGGADRAEILCGFLGCD--ARPFNPLLATLPRVLHARLADARGSA 185 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHP 177 ++ A+ +E+R PG +++ +++ F VR ++A + L+ L Sbjct: 186 LETFMEAAL----RETRERRPGGESVLARLSELMFVEVVRSYLAALPAGNTGWLAGLRDE 241 Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 +G + + P H WT++ LA +SR++ A+ F + G P+ L R+Q+AA + Sbjct: 242 FVGRALALLHGRPAHPWTLDELARKVALSRSALAERFTQLVGRPPMQYLAGWRMQLAAGL 301 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 ++ V +A VGYAS+++F +AF + G P +R R R P Sbjct: 302 LLGDSAGVSQVAAEVGYASDAAFSRAFKKAVGVPPAAWR-RSRSAKP 347 >UniRef50_A0KDP5 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=A0KDP5_BURCH Length = 308 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 121/280 (43%), Gaps = 16/280 (5%) Query: 10 LNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLL 69 L P G V GS W GAG +R T L P P +V + Sbjct: 33 LPPPDGIKFNAVVEGSCWLTVDGAGPPVRLR----TGDCFLLAAPRAFSLASDP-SVAPV 87 Query: 70 PQNSAHR-----LSHVDNESTCIVCGTLRLQHSARY--FLTSLPETLFLAPVNHSVEYNW 122 P +R ++H + C + G R + R L SLP + ++ S Sbjct: 88 PAADVYRHLERGIAHYGEPADCFLIGG-RFAYEERMPLLLGSLPPVVIVS--GDSEPAAV 144 Query: 123 LREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI-AQVNTEKNILSLLLHPRLGA 181 LR ++ L +E ++ PG + + +R ++ A N + L+ R+ A Sbjct: 145 LRWSLQQLAREFGASSPGGSLMVRHLGHMMLVQILRRYVDAGANGDVGWLAGFADARVSA 204 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 + + P WTV++LA+ H+SR++FA F+ G PL + + R+Q+A + R Sbjct: 205 ALAAIHAAPERRWTVDALAACCHVSRSTFALHFKQRLGFGPLEYVLRWRIQLAMRELRRS 264 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + IA+ +GY S+S+F AF R GC+P YR V + Sbjct: 265 NASISAIAQRLGYDSDSAFGHAFKRIVGCSPRAYRHDVTK 304 >UniRef50_C8QBD0 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QBD0_9ENTR Length = 322 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 130/307 (42%), Gaps = 31/307 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIF- 59 MD LS +L L + Q + G+ W + + S +++ A+ +G + + + Sbjct: 1 MDLLSDVLQLLSAQSYVTTGQTTGTSWSMRYPG--FSGMKFMAVRKGKIWFRLEADDNWR 58 Query: 60 TLRPGNVVLL----------------------PQNSAHRLSHVDNESTCIVCGTLRLQH- 96 L PG+ V++ P + L+ E + ++ G + + Sbjct: 59 ALLPGDGVIITRSAPFIMASDPALSPVAAESVPYIRKNGLADYGGEDSLLLAGKMEIDPI 118 Query: 97 SARYFLTSLPETLFL-APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 SA L LP + L + S +WL + L ES S PG + + Sbjct: 119 SAEQLLNVLPVVIPLHSDSESSSTLSWL---MSRLHDESLSNRPGSALAGNHLMHLVMIE 175 Query: 156 AVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 R W+ ++ + L R+ + + P +W + LA+IA +SRA FA+ F Sbjct: 176 GFRSWVLSEAAQLHGWMGALRDARIMRAVTAIHAEPAKSWQLMELAAIAGLSRAGFARCF 235 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 +GT+PL LT R+Q+A++ T P+ +A +GYASES+F F R +G P Sbjct: 236 SATTGTSPLNYLTHWRMQLASKALRLSTEPIKHLAYRLGYASESTFSTVFRRVYGVAPSA 295 Query: 275 YRERVRQ 281 +R R Sbjct: 296 HRAAWRD 302 >UniRef50_C3JUH7 Transcriptional regulator, AraC family n=3 Tax=Nocardiaceae RepID=C3JUH7_RHOER Length = 319 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 133/317 (41%), Gaps = 49/317 (15%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLP-HGAGELSVIRWHALTQGAAKLEMPTGEIF 59 MDALS +L + +G +L W L ++V+ L +G+A + TG+ Sbjct: 1 MDALSMMLAGSRAEGAFLLRSLLDPPWSLRIEDHAPITVL---VLVRGSAVVVSDTGQTE 57 Query: 60 TLRPGNVVLL-----------PQNSAHRL-------SHVDNE------------------ 83 L G+V LL P H L + VD Sbjct: 58 DLEAGDVALLRGPDPYTVADHPDTPVHVLIDEAQNCAAVDGSPLEDMSVHGIRTWGNSTS 117 Query: 84 -STCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 T ++ GT RL + +R L SL +A V S+E + L+Q+ + PG Sbjct: 118 GQTVMLTGTYRLDSYVSRQILDSLTP---VAVVRRSIETAPMTN---LLEQQIAADGPGQ 171 Query: 142 DALCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 + L ++ AVR W A+ N + P +G ++ + P H WTV SLA Sbjct: 172 EVLLDRLLDLVLISAVRTWFAENPNRSPRWIKAYEDPVIGHALRLIHNRPEHPWTVASLA 231 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 + SRA+FA+ F + G P+ LT+ RL +AA + + V IA VGY+S + Sbjct: 232 QESGSSRAAFARRFTSLMGLGPVGYLTEWRLSVAADLLADPARTVSSIAREVGYSSPFAL 291 Query: 261 HKAFVREFGCTPGEYRE 277 AF R G +P YR+ Sbjct: 292 TTAFTRHHGMSPKMYRQ 308 >UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UPU4_9BURK Length = 319 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 120/306 (39%), Gaps = 38/306 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIF 59 MD LS +L L Q + W L A I++ ++ +G L + T ++ Sbjct: 1 MDPLSDVLALLRVQSVLSARLEGAGPWALRFAA--YRHIKFGSIIEGDRWLWIDGTADVV 58 Query: 60 TLRPGNVVLLPQNSAHRLS----------------HVDNES----------TCIVCGTLR 93 L PG+ LL + + H D++ T G Sbjct: 59 KLAPGDFYLLTDGRPYCFASAPDAPLRESVDVLPPHPDDDGVVRFGQGRTRTVGAGGRFI 118 Query: 94 LQHS-ARYFLTSLPETLFL---APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 L +R L +LP + + AP ++E A + E+ PG A+ + + Sbjct: 119 LDDDVSRLLLDALPPLIHIRSDAPGTRALEL-----ASKLIAMETEDVRPGAVAMAASLA 173 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 + +R W++ L L ++G ++ M W VE LAS MSR Sbjct: 174 SIVLVNILRAWLSGGKAPAGWLGALADAKVGRALRLMHGEVARRWKVEDLASAVAMSRTG 233 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F++ FR G PL LT+ RL +A P+ IA +GY S ++F AF R +G Sbjct: 234 FSERFRVQVGLPPLEYLTRWRLTLACSALKAGDEPLAAIARQIGYESATAFSLAFRRMYG 293 Query: 270 CTPGEY 275 +PG Y Sbjct: 294 VSPGRY 299 >UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XWK6_KLEP3 Length = 306 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 35/285 (12%) Query: 31 HGAGELSVIR-------WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVD-N 82 GAG+ VIR + + +G +LE+ E LR G+ +L+P +A+R + Sbjct: 23 EGAGDWRVIRSDQGLSFYGVVLEGGCRLEIDQHEPQLLRAGDFILIP--AAYRFALTSLT 80 Query: 83 ESTCIVCGTLRLQHSARYF-LTSLPETLFL-APVNH----SVEYNWLREAIP-------- 128 T+ +Q + +F L +L + + A + H S + L +P Sbjct: 81 PPPSPALETIPVQLAEGHFRLGALDKPAQMQALIGHCASGSTNASLLASLLPAFVVVRNQ 140 Query: 129 --------FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L++E+++ G + +++ F A+R + ++ L PR+ Sbjct: 141 PRLATFVGLLKEEAQADRAGKSFVLARMVELLFIEAIRS--SGTLATPGLMRGLSDPRVA 198 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 I+ + + P WTV LA+ +SR++ + F D++G TP+ L R+ +A Q S Sbjct: 199 QAIRLLHQAPARRWTVNDLAADCALSRSTLFERFTDLTGMTPMGYLLGWRMTLAMQWLSE 258 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RERVRQLAP 284 + + IAE +GY S S+F AF R G +PG+Y R+R Q P Sbjct: 259 TGISIADIAERIGYGSASAFSVAFTRYTGISPGKYARQRATQPPP 303 >UniRef50_C8NCJ5 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCJ5_9GAMM Length = 313 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 132/300 (44%), Gaps = 28/300 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D++ RLL L Q I+ C L + + + H +H L +G+ + G + Sbjct: 11 LDSIDRLLELLDLQTRIEVYCHLQAPFHMVHEPDTPGTAWFHLLLEGSCTIAT-GGHQYA 69 Query: 61 LRPGNVVLLPQNSAHRL---------------------SHVDNESTCIVCGTLRLQH-SA 98 L+ G+ +L S H + + E ++CG ++++ +A Sbjct: 70 LQAGDFFMLTAGSQHTIYAGEGNGSFREDTRNGLLQLCNDSGGEPLRMLCGFYQVRNRAA 129 Query: 99 RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L LPE L ++ + L + E+ + G + +C LA+R Sbjct: 130 VSLLGILPEPLLVS----LGDIPQLPALCTLIHHEALTRHEGSLTIIRALCEILLLLALR 185 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 I+++ + + +L P L + ++L P +T E LA IA MSRA+FA+ F+ + Sbjct: 186 H-ISELPEKHRLTALFSDPGLARALARILADPFAPYTTEGLAEIACMSRATFARKFQQAA 244 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G+ + L++ AAQM V +AE GY SE++F AF +FG TP YR + Sbjct: 245 GSGVQTFIRTLKMSAAAQMLRDSNHAVSRVAEETGYQSEAAFINAFKAQFGITPARYRRQ 304 >UniRef50_B4E7R7 AraC family regulatory protein n=8 Tax=Burkholderia RepID=B4E7R7_BURCJ Length = 319 Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 4/197 (2%) Query: 82 NESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 + S + CG + + +R ++ PE L + + + Y + ++ E R + Sbjct: 113 DGSVGLACGFIEFHSTVSRAIVSLFPEYLIVRRGDDA--YRGIHGLFDLIRAEGRYGVDA 170 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 L ++ AVR+ + SL+ G +I +++ P AWT +S+A Sbjct: 171 PSPLIDKLVELLLFYAVRDAAGHDTVASGLASLMQRTGFGTLIAAIIDAPADAWTTDSMA 230 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 + A+MSR +F + F + SG P+ +T +R+++AA + ++ LP+ E VGY SES+F Sbjct: 231 AFANMSRTAFCKHFSEASGHPPMQFVTMVRMRLAADLL-QQGLPISRAGELVGYQSESAF 289 Query: 261 HKAFVREFGCTPGEYRE 277 AF R G PG +R Sbjct: 290 AHAFKRTMGMQPGAWRR 306 >UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IVW5_METNO Length = 320 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 123 LREAIPFL-QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 LREAI L QE G+ A+ + + VR + + + S+L ++ Sbjct: 159 LREAIEELCAQEI-----GMGAMTASLLKQVIVALVRRSMKSSRSWTDRFSILADRQITR 213 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 M+ PG A TV SLA A +SR++F F ++ G +P+ +L LR++ AA + Sbjct: 214 AFADMVARPGAAHTVRSLAHSAGLSRSAFMARFSEIFGRSPMGILRDLRMRQAALDLTTT 273 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + PV V+A + GY S SSF +AF + + P EYR+RV+ Sbjct: 274 SAPVDVVAYNAGYESRSSFVRAFRKAYNVDPSEYRQRVKN 313 >UniRef50_D0C8I5 Transcriptional regulator n=2 Tax=Acinetobacter RepID=D0C8I5_ACIBA Length = 295 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 6/230 (2%) Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT---SLPET 108 E EI + G+V+++P H + +++++ V T Q + Y T LP+ Sbjct: 62 EQKINEI--VNDGDVIVIPSRFKHSIEIIEDKAAEPVVITCVFQLNGVYGQTIAEGLPKY 119 Query: 109 LFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN-TE 167 + + W+ + ++ E G + S + ++R W+ + Sbjct: 120 IVVPSHQDGKVAEWIPMTVAAIKLELDQPSLGSQVMLSSVIDLLLVWSIRFWLNKETLNH 179 Query: 168 KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLT 227 K+ +S L P + + M P WTVE LA + S++ F++ F + GTTP+ L Sbjct: 180 KSWISALQSPTISKALFLMHSNPTKEWTVEILAKETNQSKSKFSKNFIQLVGTTPINYLK 239 Query: 228 KLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 R+++A Q + IA+ VGY+S ++F ++F++ FG +P ++RE Sbjct: 240 HWRMKLAKQYLMETNKSISQIADLVGYSSPAAFTRSFIQTFGYSPRKFRE 289 >UniRef50_B0SFV6 Transcriptional regulator, AraC-related n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SFV6_LEPBA Length = 298 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 32/265 (12%) Query: 41 WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQH---- 96 +H +TQG+ + +I L+ G+++ + + H L ++ V R H Sbjct: 39 FHVVTQGSCYARIGK-QIIPLQKGDLLFITRGVHHELL---SDPKAKVVTIERFLHEKNN 94 Query: 97 ------------SARY---------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESR 135 S RY L LP+ + L P +++ L + I L +E Sbjct: 95 QKIDQNPVTTFVSVRYEVPDGPVHPLLLELPDYI-LIPYASIQKHHSLEDFIQILSKELE 153 Query: 136 SAMPGVDALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAW 194 + G D + ++ +R W+ Q N+ + + ++++ W Sbjct: 154 LNL-GTDLIVQRLTDIMLYYMIRIWLQQEENSPVGWIKAFHDKTVLYALEKLHNAFSKEW 212 Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGY 254 T+ESLA +SRA+ A FRDV G P+ L KLR++ A Q+F + + + IA++VGY Sbjct: 213 TIESLAKETGVSRANLANKFRDVLGIPPMEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGY 272 Query: 255 ASESSFHKAFVREFGCTPGEYRERV 279 AS SF KA+ R +G +P +RV Sbjct: 273 ASAFSFSKAYKRIYGNSPSREWKRV 297 >UniRef50_A8ZMX0 Transcriptional regulator, AraC family n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZMX0_ACAM1 Length = 328 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 3/199 (1%) Query: 82 NESTCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 + S +CG L+ + +LP L APV+ + L + +E G Sbjct: 124 SSSLLCLCGIFYLRDTYLNPLFAALPPVLH-APVSQVESFQNLTGVASLIAKELDKPSAG 182 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 + ++ AVR ++A+++ + + L+ L P + + ++ PGH W+V+SL Sbjct: 183 SSFMVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVDSL 242 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A +S + FA F+ G P+ ++K RL IA+++ +R + IA VGY + ++ Sbjct: 243 AQSVELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNLAA 302 Query: 260 FHKAFVREFGCTPGEYRER 278 F +AF R FG PG +R R Sbjct: 303 FTRAFKRYFGEPPGAWRTR 321 >UniRef50_A1T3N4 Transcriptional regulator, AraC family n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1T3N4_MYCVP Length = 307 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 157 VREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R ++AQ + L LL RL + M + PG W +E LA A MSR SFA+ FR Sbjct: 181 LRAYLAQADDLPPGWLRLLTDERLRPAVTSMHDEPGKPWRLEELARAAAMSRTSFAERFR 240 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V+G PL L R+Q+A V +A +GY SES+F AF RE G +P Y Sbjct: 241 AVAGVPPLTYLNAWRMQLARHALRDSDTRVGPLAFRLGYTSESAFSNAFKREVGMSPLRY 300 Query: 276 RERVRQL 282 R V+ + Sbjct: 301 RASVQAV 307 >UniRef50_Q1MGU4 Putative AraC family transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MGU4_RHIL3 Length = 314 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 39/304 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPH--GAGELSVIRWHALTQGAAKLEMPTGEI 58 +D LS++L + + G I L W L GA ++ +G + G Sbjct: 7 VDLLSQILAMVSLHGEIVFTVELSQPWALRFHPGAAYFFIV-----LEGGLTVVNDQGHA 61 Query: 59 FTLRPGNVVLLPQNSAHRLSHVD---------------------------NESTCIVCGT 91 + G++++LP+ H LS + + T ++ G Sbjct: 62 LQVATGDLIMLPRGLGHGLSDGECATEADLAALMAAQVTAEKLNVSHGGGGQQTKLIAGA 121 Query: 92 LRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA 150 R + S + +++LP + + P W F+ +E++ PG + S++ Sbjct: 122 FRFESASVPWLVSALPSVIHI-PKASGETAGWAEGLGYFMMKEAQEVYPGASIMISRLID 180 Query: 151 TFFTLAVREWIAQVNTEKNI--LSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 +R W+ ++ N+ L L R+ ++ + + P WTV LA +A +SR+ Sbjct: 181 VLVISILRSWV-RIERGGNVGWLGALGDARISRALKAIHDEPYRRWTVLDLARVAGLSRS 239 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 FA F + PL+ ++ RL +A + + V +A VGY SE++F +AF +F Sbjct: 240 GFAARFTALVKEAPLSYHSRWRLTLALGLMRQPDAKVGSVARQVGYDSEAAFSRAFKAQF 299 Query: 269 GCTP 272 G P Sbjct: 300 GFAP 303 >UniRef50_A1SPZ5 Transcriptional regulator, AraC family n=1 Tax=Nocardioides sp. JS614 RepID=A1SPZ5_NOCSJ Length = 332 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 31/273 (11%) Query: 34 GELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN----------- 82 G V+ H + +G +++ G+ G+VV+LP HR+ V++ Sbjct: 45 GAERVVLMHVIGRGRCWIQVGDGDRHWADAGDVVVLPYGDTHRMGGVESVEPVQVGTLVQ 104 Query: 83 ----------------ESTCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLRE 125 + T +VCG L + L++LP ++PV + E+ +R Sbjct: 105 PPPWTRMPAIEHGGGGDPTQVVCGYLASEDPLFDPRLSALPPVFVVSPVGEAQEF--VRA 162 Query: 126 AIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQ 184 +I + Q++ G + ++ +R +A L L HP L + Sbjct: 163 SIAYALQQTAQVADGRFEVPPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMA 222 Query: 185 QMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLP 244 M P W+V LA +A +S + + FR V G P+ L R+ +A + L Sbjct: 223 AMHADPAAHWSVAELARVAAVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELG 282 Query: 245 VVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 V VIA VGY SE +F +AF R G +P ++R+ Sbjct: 283 VAVIAHRVGYESEEAFSRAFKRAHGRSPRQWRQ 315 >UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regulator n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJP1_9SPHN Length = 350 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%) Query: 91 TLRLQHSARY---FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 TLR+ R+ L SLP+ + L P + + ++ + + + + G+ A+ ++ Sbjct: 146 TLRMYLDRRFPTAILQSLPKLVRL-PGFVTRKAPFVEQLTSLIGEHGKQGFMGL-AIATR 203 Query: 148 ICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 + T +++ + ++ L P L +++ + E PG WT+ +LA A MSR Sbjct: 204 LAEGVLTACIKDHLEATFQIVDVGRGLNDPLLSGMLRAIQEDPGRDWTILNLAERAKMSR 263 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 ++F F V+G P +T +R+ A ++ + P+ IA +GY+SE+SF +AF R Sbjct: 264 SAFINRFTRVTGQKPNEFVTSMRMMQAMELLEKSGTPIAHIATEMGYSSEASFTRAFHRW 323 Query: 268 FGCTPGEYRER 278 F TPG R R Sbjct: 324 FKVTPGTVRRR 334 >UniRef50_C7PWW7 Transcriptional regulator, AraC family n=13 Tax=Bacteria RepID=C7PWW7_CATAD Length = 330 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 1/158 (0%) Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI-LSLLLHPRLGAVIQQ 185 IP L E PG DA+ ++ +A+R W+A+ + E P +G ++ Sbjct: 160 IPLLADEVARDTPGQDAVLDRLLDLLTVVALRTWLARPDVETPAWYRAQDDPVVGTALRL 219 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 + + P H WTV +LA AH+SRA+ A+ F G P+A L RL ++A + + Sbjct: 220 IHDDPAHPWTVAALADAAHVSRAALARRFAAEVGEPPMAYLANWRLALSADLLRDPASTI 279 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 +AE VGY S + AF R G +P E+RER + A Sbjct: 280 ASVAEQVGYGSAFALSAAFKRVRGISPKEHRERASRDA 317 >UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=Bacteria RepID=Q399T6_BURS3 Length = 325 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 1/147 (0%) Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLE 188 ++ ESR+ P D + +++ A+R + + N ++ L RL A I++M E Sbjct: 169 LVRDESRAQRPARDIVLARLLEVLLIEALR-FTSGTNASPGLVRGLADSRLAAAIRRMHE 227 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 P H WT+ LA A +SR++F + F G P+ L R+ +A + R + I Sbjct: 228 RPAHPWTIVELAKEAALSRSTFFERFSRAVGLAPMEYLLTWRMALAKDLLRRNEGRIAEI 287 Query: 249 AESVGYASESSFHKAFVREFGCTPGEY 275 A VGY+S S+F AF R G P +Y Sbjct: 288 AGRVGYSSASTFSVAFTRHVGRPPAQY 314 >UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9P9_ACTMD Length = 309 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 1/105 (0%) Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 +GAV++ + PGH WT+E LA+IA MSR+SFA FR G PL L + R+Q+A Sbjct: 206 IGAVLRAVHAEPGHRWTLEELAAIARMSRSSFAVNFRTKVGKPPLDYLIEWRMQLARAAL 265 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 R + IA ++GY SES+F AF R G +P E+R +R A Sbjct: 266 -RTDDSLTSIAGAIGYRSESAFSTAFRRVVGVSPREFRVSLRPRA 309 >UniRef50_A6SWK7 Transcriptional regulator, AraC family n=3 Tax=Burkholderiales RepID=A6SWK7_JANMA Length = 323 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 32/264 (12%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNEST---------------- 85 H +G L + L P VLLP A+R+ +ES Sbjct: 48 HYCLEGRGTLTVHGSPPIQLEPHTFVLLPSGIAYRIESASHESIQLEHRISLCGSFSHES 107 Query: 86 -------------CIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQ 132 VCG +R++ ++ L + + +A N + N LR+ L Sbjct: 108 VPTLVVGNGLQGIVTVCGEIRVELASGSDLFTSLDVPLVARFNGA---NGLRDQFVMLLA 164 Query: 133 ESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGH 192 ES G L + LA+R+W + L+ + RL + + E P Sbjct: 165 ESTQPGIGSSVLTEALLKQCLVLALRQWGENDPSPLPWLAAVGDKRLSRALHAIFEHPAI 224 Query: 193 AWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESV 252 A+TV+SLA IA MSR++FA F+ G +P++++ +RL+ A+++ +PV +A+ V Sbjct: 225 AYTVDSLAMIAGMSRSAFAAAFQRAFGQSPMSLVRLVRLRRASELLITTAIPVAEVAKRV 284 Query: 253 GYASESSFHKAFVREFGCTPGEYR 276 G++S S+F AF + +G P +R Sbjct: 285 GFSSRSNFSLAFSQLYGLDPSRFR 308 >UniRef50_C6WK58 Transcriptional regulator, AraC family n=3 Tax=Actinomycetales RepID=C6WK58_ACTMD Length = 337 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 2/144 (1%) Query: 140 GVDALCSQICATFFTLAVREWIAQ--VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G A + I R W+A V ++ L LL P + + +M P AWT Sbjct: 159 GTTAAVNSIVDLLLVQFARAWLAANPVARSRSWLGALLDPLVREALTRMHGEPARAWTTA 218 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 +LAS ++SRA+ ++ F G P A LT+LR+ +AA P+ +AE+VGY S Sbjct: 219 NLASALNVSRATLSRRFPLALGEPPGAYLTRLRMDLAAIRLRDTDEPLESVAEAVGYGSG 278 Query: 258 SSFHKAFVREFGCTPGEYRERVRQ 281 +F +AF R G +P +YR R R Sbjct: 279 KAFSRAFQRSRGRSPSDYRFRARH 302 >UniRef50_Q15XK9 Transcriptional regulator, AraC family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15XK9_PSEA6 Length = 316 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 1/162 (0%) Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLG 180 WL A F Q+E PG A F VR ++ + ++ + L PR+G Sbjct: 155 WLSAAFGFCQRELSHNTPGFSATAMNFTNLIFGEFVRSYLNSADLPHESWMRGLSDPRIG 214 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + M V ++A MSR SFA++F+ + G +P+ L R+ AAQ Sbjct: 215 RALAMMHTRTAEQLMVSTMAKEVGMSRTSFARIFKTLVGQSPIDYLINCRMHKAAQYLLE 274 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 + I E +GY SE +F +AF++ FG +P +++++ +++ Sbjct: 275 GNHSIGKITEMIGYHSERAFRQAFIQRFGLSPSQFKKQQQKI 316 >UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BUW4_BEUC1 Length = 322 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 5/196 (2%) Query: 87 IVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 IVCG L L SLP + APV+ + W+ + S G +A+ Sbjct: 129 IVCGYLACDKGPFNPLLDSLPRMVH-APVSER-SWGWMTSLLDAAIVASDERDAGQEAML 186 Query: 146 SQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 +++ F A++ I + + +N ++ L +G+ ++ M WT+E LA Sbjct: 187 AKLSELMFVEALKTHIEGLPADTRNWVAGLRDREIGSALRLMHGRFAEPWTLEHLARDVG 246 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSR+S A+ F G P+ L + RLQ+AA++ + V A +VGY SES+F++AF Sbjct: 247 MSRSSLAERFTAYVGVPPMTYLARWRLQLAARLLQSGS-GVAQAASAVGYQSESAFNRAF 305 Query: 265 VREFGCTPGEYRERVR 280 R+ G PG +R R+R Sbjct: 306 KRQVGEAPGVWRRRLR 321 >UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=Pseudomonas RepID=Q88GS8_PSEPK Length = 306 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/272 (22%), Positives = 114/272 (41%), Gaps = 37/272 (13%) Query: 41 WHALTQGAAKLEM-------------PTGEIFTLRPGNVVLLPQNSAHRLSHVDN----- 82 WHA TQG + + L G+ V L ++ A+RLS + Sbjct: 31 WHASTQGMGRASFHLVVQGHCWLHIDGQPQAICLEKGDAVFLLRDLAYRLSSDQDPVDAC 90 Query: 83 ---------------ESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREA 126 + +VCG Q + L + + L + S R Sbjct: 91 AQPRQAMQALDSQAADGVGLVCGFFHFQSGLCSLIVEGLADWILLRAEDPSGSAA--RAL 148 Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQM 186 + +E R L ++ F +R+ + + +++L P +++Q+ Sbjct: 149 FGLILEECRRDAGPSQMLLERLTHLLFLYVLRQQVHAGQSLGGLVALARQPAFAGLLEQL 208 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 +E PG WT+E++A+ +SR++F + F +++G +P VL LR++ A+Q+ + V Sbjct: 209 IEHPGQTWTMENMAACTGLSRSAFFKRFSELAGQSPGQVLLALRMRHASQLL-QAGHTVE 267 Query: 247 VIAESVGYASESSFHKAFVREFGCTPGEYRER 278 + VGY S ++F +AF + G PG YR + Sbjct: 268 QVGAQVGYQSVAAFTRAFAKAVGVQPGAYRRQ 299 >UniRef50_B1M711 Transcriptional regulator, AraC family n=4 Tax=Rhizobiales RepID=B1M711_METRJ Length = 327 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 128/304 (42%), Gaps = 33/304 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL-------------PHGAGELSVIRWHALTQG 47 MD L+ +L GT+ + LG W L HG+ L++ + Sbjct: 14 MDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYALFHYVSHGSATLALDQEREFHMS 73 Query: 48 AAKLEMPT----GEIFTLR---PGNVVLLPQNSAHR--LSHVDNESTC--IVCGTLRLQH 96 A L + + E ++ R P +V+ L ++SAH + H + C ++CG + Sbjct: 74 AGDLVVISRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPPCSTMICGKFTVAQ 133 Query: 97 SARYFLTSLPETLFLAPVNH---SVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 +R L L L PV H + + WL + + ES PG D + S++ F Sbjct: 134 PSRSSLLEL-----LPPVLHLKSTEDGAWLELILRRMVHESAQPRPGQDVVLSRLTEVLF 188 Query: 154 TLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W+ + E L + P +G ++ + + +WT++ L + R++F+ Sbjct: 189 VEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVGLGRSAFSA 248 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G + L R+ AA + + IA VGY S ++F K F R G +P Sbjct: 249 RFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLFHRHHGLSP 308 Query: 273 GEYR 276 G YR Sbjct: 309 GRYR 312 >UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=Actinomycetales RepID=A8KZG5_FRASN Length = 330 Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 101/255 (39%), Gaps = 41/255 (16%) Query: 64 GNVVLLPQNSAHRLS---------------------HVDNES---------TCIVCGTLR 93 G++VLLP+ H L+ H D T ++CG Sbjct: 62 GDIVLLPREPGHALADDPASPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCGAYM 121 Query: 94 LQHSARY-FLTSLPETLFL-APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 + L LP+ + L A V H LR A+ L E G A S + Sbjct: 122 FDRFRLHPLLADLPDVIHLPARVGHHPR---LRAAVDLLGAELAEPRAGAAASMSALLDL 178 Query: 152 FFTLAVREWIAQVNTEKNIL------SLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHM 205 +R W +T + + L P + A ++ M P WTV L + + Sbjct: 179 LLLYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARVGL 238 Query: 206 SRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFV 265 SR FAQ F + G PLA LT R+ +AA++ P+ +A GY+SE +F K F Sbjct: 239 SRTVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKTFK 298 Query: 266 REFGCTPGEYRERVR 280 REFG PG +R R Sbjct: 299 REFGVPPGAFRREGR 313 >UniRef50_A4W931 Transcriptional regulator, AraC family n=2 Tax=Enterobacteriaceae RepID=A4W931_ENT38 Length = 340 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 34/270 (12%) Query: 41 WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL--------SHVDN---------- 82 +H + G A L G + L+ G++V +PQ H+L H+D Sbjct: 63 FHYIAVGTALLRTNDGALHELKAGSMVFMPQGEEHQLISDVGCAIHHIDTLGSAPLGEAV 122 Query: 83 ------------ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFL 130 ST + G + L L + N + Y L + + Sbjct: 123 SGINTCPSTHPTPSTVLFYGCMEFDLGGMQGLGKLMPQAIVVEANEKI-YPGLVPILGAM 181 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLE 188 + E S G + +++ + VR WI + +EK +++ L PRL I + Sbjct: 182 KFEICSGRAGFAGILARLAEVAAAMIVRGWI-ENGSEKAAGLIAALRDPRLARAILTIHR 240 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 W+V LA+ +H+SR+ FA+ F + G P ++R+++A + + + + Sbjct: 241 DTSREWSVAELAAQSHVSRSVFAERFTSIIGIPPQRYAREVRMRLAGHWIIHDKISIDTV 300 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRER 278 A +GYAS+++F +AF R G PG R+R Sbjct: 301 ALRLGYASQAAFSRAFKRINGYPPGAMRQR 330 >UniRef50_A6T1U9 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A6T1U9_JANMA Length = 281 Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 6/235 (2%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF 101 H L G+ L P + L +++ +P+ + H+L +++ ++C ++ + Sbjct: 39 HLLQAGSVTLLGPDRKDLQLTRPSLIFMPRPAKHQLFAGESDGAKLLCASMEFEGGIDNP 98 Query: 102 LT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 L+ SLP+ L LA + + L + + ++ E+ + G +A ++ L +R Sbjct: 99 LSASLPDCLVLALDDLPM----LADTLEWMFAEAANVHCGREAALERLFELLIILLLRYL 154 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 + +++ L RL + QM P HAW++ LAS ++MSRA++A F+ V G Sbjct: 155 LDHHQLRTGMMAGLADMRLARSLLQMHNSPEHAWSIAELASESNMSRAAYAVHFKRVIGQ 214 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 TP L R+ + AQ RE + +IA VGY S S+ +AF R+ G +P ++ Sbjct: 215 TPADYLLSWRVSL-AQKLMREGRSITLIAAQVGYESPSALSRAFRRKTGLSPRDW 268 >UniRef50_Q13NB1 Transcriptional regulator, AraC family n=6 Tax=Burkholderia RepID=Q13NB1_BURXL Length = 359 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 2/190 (1%) Query: 87 IVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 I CG + L SL +A N+ + R ++ E+ L + Sbjct: 146 IACGFFEFNSALDDMLLSLLPDHIVARRNNP-SLDGARAIFDLIRVEALRDAQTPSPLIA 204 Query: 147 QICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 ++ F A+R A+ SL+ ++ ++E PG WT ++A HMS Sbjct: 205 RLTDLLFVYALRALGAEDEIVPCFWSLMRRAEFAPLVTAIIESPGERWTTGTMAHFVHMS 264 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 RA F + F D++G P +T +R+++AA M R AE VGY SES+F +AF R Sbjct: 265 RARFCKQFVDIAGQPPAQFVTLIRMKLAAAML-RSGARTPDAAERVGYQSESAFSQAFKR 323 Query: 267 EFGCTPGEYR 276 G PG +R Sbjct: 324 VTGVQPGAWR 333 >UniRef50_A9CLM3 Transcriptional regulator, AraC family n=2 Tax=Agrobacterium tumefaciens RepID=A9CLM3_AGRT5 Length = 254 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 6/198 (3%) Query: 81 DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 D + C T+ SA + +LP+ L L+ N LR + E A G Sbjct: 62 DGAAIC-AGATVDFGGSANPLVGALPDELCLSLANEP----ELRGLCQLMVAEVEVARCG 116 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 + +++C LA+R+ IA + +L+ L HP L + + + P W + LA Sbjct: 117 GGTIEARLCEIIVVLAIRKAIAIGTVDAGLLAGLAHPGLHPSLVAIHDNPARNWRIADLA 176 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 +IA MSR F F +P+A L RL + R V +A VG+ S ++F Sbjct: 177 AIADMSRGQFISTFTQTVAQSPIAYLNGWRLALGRAEL-RAGRSVKSVATGVGFGSAAAF 235 Query: 261 HKAFVREFGCTPGEYRER 278 +A+ R+FG P + + R Sbjct: 236 SRAYSRKFGSPPAQSKPR 253 >UniRef50_Q3BT36 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q3BT36_XANC5 Length = 280 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 4/234 (1%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF 101 H + +G P E + +++ P+ ++HR ++ +C + L S Sbjct: 38 HLVRRGPITARSPVHEDLLVTEPSLLFYPRVASHRFVAAPGDTAEQLCAEVDLGASTGNP 97 Query: 102 LTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI 161 L ++ L P+ + L + L E+ G A ++C +R + Sbjct: 98 LAMALPSMLLIPL---ADLPGLGPTLELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLM 154 Query: 162 AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTT 221 +L+ L P+L I M + P AW++E+LA+ A MSRA FA F+D G T Sbjct: 155 DGRLGATGLLAGLADPKLARAITAMHDAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVT 214 Query: 222 PLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 P L R+ ++ + ++ PV V+A+ VGY S ++ +AF GC P ++ Sbjct: 215 PGDYLADWRMNVSCTLL-KQGRPVAVVADRVGYGSPNALARAFRVRMGCAPRDW 267 >UniRef50_Q0K088 Transcriptional regulator (Transcriptional regulator, arac-family) n=4 Tax=Proteobacteria RepID=Q0K088_RALEH Length = 310 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 119/297 (40%), Gaps = 28/297 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS ++ L P+ K+ W + + + + A+ +G+ +L + TL Sbjct: 15 DPLSEVISLLQPRAVFSKSISGAGRWGVRYA--DFGQPSFCAVLEGSCRLAVDGQHALTL 72 Query: 62 RPGNVVLLPQNSAHRLS--------HVDNESTCIVCGTLRLQHSAR-----------YFL 102 G+ VLLP LS +D + T G +R H R YF+ Sbjct: 73 ETGDFVLLPATPGFTLSGFEPVAPERIDPKVTPAPMGEVR--HGRRGGRPDVRLLGGYFV 130 Query: 103 TSLPETLFLAPV----NHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L + H L + + +ES G + + +++ A+R Sbjct: 131 FDSSNAALLVSLLPALVHVRGAERLSAIVRLVSEESGERRSGRELVLTRLVEVLLIEALR 190 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 + + +L L RL + ++QM P +WTV LA A +SR++F + F Sbjct: 191 STSGE-DAPPGLLRGLTDTRLASAMRQMHADPARSWTVAQLARKAALSRSTFFERFTRAV 249 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G P+ L R+ +A + R + + +AE VGY S ++F AF R G P Y Sbjct: 250 GMPPMEYLIAWRMAVAKDLLRRHDIGIAEVAERVGYGSATTFSTAFSRHVGQPPSLY 306 >UniRef50_A3ZY19 Probable transcriptional regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZY19_9PLAN Length = 323 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 1/102 (0%) Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 + ++ ML P + W+VE LA++ M+R++FA+ FR+V G P+ VLT +R+QIA + Sbjct: 209 ISPILAAMLRQPEYPWSVERLAAVNCMARSTFARRFREVVGEAPMDVLTTIRMQIAIDLV 268 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + + IA VGY S S AF R FG +P ++R +R Sbjct: 269 -KAGANLKDIARRVGYGSIQSLTSAFRRRFGVSPAQFRSNLR 309 >UniRef50_B1FJH3 Transcriptional regulator, AraC family n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FJH3_9BURK Length = 153 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 63/118 (53%) Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 W + T LS + R+ + M PG AWTV LA ++++SR++FA F+ V G Sbjct: 18 WATEGATGHGWLSGAIDSRINPAMSAMHADPGRAWTVNDLAELSNLSRSAFADRFQRVVG 77 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 PL+ LT RL AA++ PV IA VG SE++F +AF + +P ++R Sbjct: 78 QAPLSHLTTWRLDRAAELLRYSRAPVADIANRVGQPSEAAFSRAFRGRYEMSPMQWRR 135 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/197 (21%), Positives = 96/197 (48%), Gaps = 4/197 (2%) Query: 87 IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 I+CG + + + L++LP + L+ + S + W+ + + E +++ Sbjct: 123 IMCGIVEYDEAIEHPILSALPSIIQLSNI-QSNDNIWM--TVKLIDAEIIRTNNKKNSII 179 Query: 146 SQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHM 205 ++ F + +I + LS L PRL ++Q + + P WT++ ++ + M Sbjct: 180 DRLTEVLFIQLLNSFIEKNEHLTGFLSALKEPRLNKILQLIHQHPERQWTLDIISDVVGM 239 Query: 206 SRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFV 265 SRA+ + F+ G +P+ +++ R+ A Q+ L + IA+ +G++ + AF Sbjct: 240 SRATLQRKFKAAIGVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFK 299 Query: 266 REFGCTPGEYRERVRQL 282 +G TP ++R+++ +L Sbjct: 300 DHYGDTPSQFRKKLEKL 316 >UniRef50_Q47YP7 Transcriptional regulator, araC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YP7_COLP3 Length = 273 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/240 (22%), Positives = 108/240 (45%), Gaps = 6/240 (2%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL-SHVDNESTCIVCGTLRLQHSARY 100 H L G L G+ + V+ P AHR+ + DN + + + S+ Sbjct: 39 HLLLSGELTLIDEEGKSRLVNEPTVLFFPTPHAHRIIGNEDNPPELVCANIIYNESSSNP 98 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 +LP + + L++ +L +E+ G + + + F +R Sbjct: 99 IANALPSMMSFKLSDDER----LKQTADWLFEEAFHERSGQLPMINSLTNIFLIHVLRHV 154 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 + + +L+ L HP++ V+ + + P W +E +A +A MSR+ FA +F+ G Sbjct: 155 LDNNIMQHGLLAGLAHPQVSIVLLAIHKAPEQQWGLEEMAELAIMSRSKFADIFKRTVGQ 214 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +P L R+ +A + ++ PV ++A +VGY + S+ + F ++ G +P ++ E+ R Sbjct: 215 SPGDYLIDWRIIVAKGLLKKDK-PVALVANAVGYENGSALARVFRKKLGISPKQWVEQTR 273 >UniRef50_A3Y511 Transcriptional regulator AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y511_9GAMM Length = 311 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 61/109 (55%) Query: 170 ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKL 229 +L+ L +L I + + P AWTVE LA A MSR +F FRD G TPL +T Sbjct: 188 LLAALSDDKLARAIVAIHDQPAQAWTVERLAQQAGMSRTAFNNAFRDKLGHTPLEYVTLW 247 Query: 230 RLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 R+++A Q + + ++ +GY SE++F +AF + G PG+ R+R Sbjct: 248 RMRLANQKLRQGQHNLAALSLELGYQSETAFRRAFKKNLGFAPGQVRKR 296 >UniRef50_A9AD06 AraC family transcriptional regulator n=5 Tax=Burkholderia cepacia complex RepID=A9AD06_BURM1 Length = 320 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 31/253 (12%) Query: 61 LRPGNVVLLPQNSAHRLSHVDNE-------------------------------STCIVC 89 + PG+ VLLP H ++ +E ++ + Sbjct: 61 VEPGDFVLLPHGDEHVMASSLDEPPVPFDTLMADKGIRPRFDTPLEFAAGGGGATSELYT 120 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G + + R L S+ TL + + WL + +ES + PG +++ Sbjct: 121 GIVVYRDIVRSPLFSVLPTLIHVRAHDAAVAPWLASTLQSFIEESMACQPGWAVAATRLA 180 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 F +R + L L P++G + M P W + SLA+ A MSR+ Sbjct: 181 DVLFVQLLRAHLQSSANHTGWLRGLTDPQIGRAMALMHRDPRRNWQLASLAAEAGMSRSR 240 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F F ++ G TP+ LT R+ +A+ ++ L ++ IAE VGY SE +F +AF R G Sbjct: 241 FCARFAELVGETPIGHLTAYRMYLASGELAQGRLRLIEIAERVGYTSEKAFARAFHRWSG 300 Query: 270 CTPGEYRERVRQL 282 P Y + L Sbjct: 301 MAPRRYARNAQDL 313 >UniRef50_C5D1X9 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5D1X9_VARPS Length = 259 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 18/216 (8%) Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 RPG LP ++ + ++ + A ++++PE + + P++ S Sbjct: 52 FRPGGFSELPPDAR-------------IAASVDFDNEANPLMSAMPEEVSV-PLDGSPSL 97 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 A SR G A +++ +A+R I + + + L HP L Sbjct: 98 QATAAAFMAEAAGSRC---GRSAALNRLAEVLVLMALRSAIDAGTQKPGLFAALAHPSLH 154 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + +MP WTV+ LAS + MSR++F FR + GTTP+A L RL + A+ + Sbjct: 155 RAVVSIHDMPSRQWTVDDLASRSAMSRSTFMSTFRTIVGTTPMAYLGAWRLTL-ARRYLM 213 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 PV + A G+ S +F +AF + +G P + Sbjct: 214 AGDPVKLAARRTGFGSAEAFSRAFSKAYGHAPAALK 249 >UniRef50_C5CWM4 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CWM4_VARPS Length = 308 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 1/152 (0%) Query: 123 LREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA-QVNTEKNILSLLLHPRLGA 181 L+ + L E+ G L S++ F AVR +A ++ L+ L R+G Sbjct: 145 LQGTLQLLAMETGEPGLGSGLLVSRLADIVFVQAVRAHVAAHGESQTGWLAALADARIGP 204 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 ++ M + WTVE+LAS A +SR++FAQ FR+ G PL LT+ R+ A M + Sbjct: 205 ALRAMHKDMARDWTVEALASTASLSRSAFAQRFRERVGQAPLEYLTQWRMFKAGNMLGQG 264 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 V IA +VGY SE++F KAF R G PG Sbjct: 265 HAAVGAIAGAVGYESEAAFSKAFKRRMGMAPG 296 >UniRef50_D1BJS6 DNA-binding domain-containing protein, AraC-type n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJS6_SANKS Length = 338 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 21/211 (9%) Query: 92 LRLQHSARYFLTSLP--ETLFLAPVNHSVEYNWL-REAIPFLQQESRSAMPG---VDALC 145 L + H R + S ++L +A + E L EA+P + + PG VD L Sbjct: 124 LAMAHGTRTWGNSADGADSLLVATYQGAGEVGRLATEALPRVAHVPAGSGPGTTLVDLLV 183 Query: 146 SQICA--------------TFFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMP 190 ++ A VR W+ A + LS P + ++ + + P Sbjct: 184 GEVAADGVGQETVLDRLVDVLLVTTVRAWLSAHPDDAPGWLSAPHDPVVHGALRAIHDRP 243 Query: 191 GHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAE 250 WTV +LA +SRA+FA FR G+ P+A LT+ RL +AA + + + IA Sbjct: 244 AEPWTVVALAREVDVSRATFAARFRAQVGSPPMAYLTRWRLTLAADLLTTTDRTLASIAT 303 Query: 251 SVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 VGY S + AF ++ G +PG YR + Q Sbjct: 304 DVGYGSPFALSAAFSQQMGTSPGRYRRQQTQ 334 >UniRef50_B6YYF5 Transcriptional regulator, AraC family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YYF5_9RHOB Length = 302 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 66/106 (62%) Query: 171 LSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLR 230 ++ L PR+ V++ +L+ PG +VESLAS+A MSR+ FA+ F++ G+ P+ +L +R Sbjct: 192 MAALRDPRMWPVLRHILDTPGEPHSVESLASLAGMSRSGFAKRFQEAYGSGPMELLRDVR 251 Query: 231 LQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 ++ AA M P+ ++ +G+ S S+F +AF G +P ++R Sbjct: 252 MRRAATMLLETDHPIERVSHLIGFRSRSAFSRAFEAAIGISPQKFR 297 >UniRef50_C1F8R2 Transcriptional regulator, AraC family n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8R2_ACIC5 Length = 327 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 55/95 (57%) Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 A I M P WTV+ LA A MSR++FAQ F++ G ++ LT+ R+ +AA Sbjct: 216 AAIAAMHRAPAQRWTVQELAEQAGMSRSAFAQRFKERVGLPAMSYLTRWRMMLAADQLMH 275 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V IA S+GY SES+F AF RE GC+P +Y Sbjct: 276 SKDSVAEIAFSLGYESESAFGFAFKREMGCSPRQY 310 >UniRef50_A5V6I7 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V6I7_SPHWW Length = 319 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR-LGAVIQQML 187 F++ E R PG +A Q+ F VR + T++ + R +G ++ + Sbjct: 167 FVEAEHRQPNPGYNATAQQLANFLFIALVRNHVLSNGTDRASWIRGMSDRAIGHALKLIH 226 Query: 188 EMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 + W++++LA + +SR+ FA FR + G TP+ L +R+ AAQ+ + PV Sbjct: 227 QAFDKPWSLQNLARASGVSRSVFAARFRTLVGQTPMTYLAAVRMHAAAQLLI-DGQPVSN 285 Query: 248 IAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + + VGY SE +F KAF ++FG P Y + +R Sbjct: 286 VCQRVGYRSEWAFRKAFRQQFGMMPARYGKSLR 318 >UniRef50_B5Y1B2 Transcriptional regulator, AraC family n=1 Tax=Klebsiella pneumoniae 342 RepID=B5Y1B2_KLEP3 Length = 317 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 124/257 (48%), Gaps = 18/257 (7%) Query: 41 WHALTQGAAKLEMPTGE-IFTLRPGNVVLLPQ---NSAHR--------LSHVDNESTCIV 88 W Q ++ L + G+ +F L+ VL SA+R L++ D ST + Sbjct: 48 WLHCAQHSSALRLEKGDMVFILQDCPFVLSSHENAQSAYRAPVQEMQPLTYKDETSTALA 107 Query: 89 CGTLRLQHS-ARYFLTSLPETL-FLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 CG + + + ++ L+ LP+ + F A + S L + + +E+ + L + Sbjct: 108 CGFITFKTTISQMLLSFLPQVIVFKAQDDRSGSIGKL---VAVINREATQTALRSEKLIA 164 Query: 147 QICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 + F + +R +++ + + ++ L ++ +++ P WTVE++A + +S Sbjct: 165 SLTELLFFMVIRHYLSSHTVKTPLDNIPLTTEFLNLMAEIVLFPARPWTVEAMARASGLS 224 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 R+ F Q F VS +P ++ +R+ +A Q + + + AE VGY S+++F++AF R Sbjct: 225 RSWFIQRFNQVSPLSPAEIVRHIRIALACQHIA-GGVSLTQSAERVGYLSQAAFNRAFQR 283 Query: 267 EFGCTPGEYRERVRQLA 283 G TPG Y ++ R A Sbjct: 284 ITGVTPGRYSQQCRDNA 300 >UniRef50_A9GPX5 Probable transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GPX5_SORC5 Length = 311 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 75/281 (26%), Positives = 113/281 (40%), Gaps = 58/281 (20%) Query: 42 HALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIV------------- 88 H +T+G+ L E +L G+V L+ N HR+ H D + ++ Sbjct: 43 HHVTEGSCVLRAGR-EAVSLYQGDVALVRPNVGHRVDHGDARAKPVLLDRWLEVAREEDG 101 Query: 89 --------------CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQES 134 CG R +H A L + T+ A A+ L+ E Sbjct: 102 ERVLGRGAATARALCGVFRFEHDALAPLLQVLPTVIHAGARAIEARPSFAGALARLRSEL 161 Query: 135 RSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR-------LGAV----- 182 A PG LA R W+ + E L LL R LGA Sbjct: 162 HEARPGAG------------LARRRWLELILIE---LVRLLADREPAKLAALGATQDAVV 206 Query: 183 ---IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 I +++ P AW V++LA +SRA+ A+ F + +G P+A LR + A ++ Sbjct: 207 ARAIAELVHDPARAWDVDTLARTVGVSRATLARRFLEATGAPPMAYRATLRTEHARRLLR 266 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 TL IA +VG+A+ +F +AF RE G TP R ++R Sbjct: 267 ETTLSNQQIAHAVGFATVQAFQRAFRRETGATPSAVRAQLR 307 >UniRef50_A3I6W7 YbbB n=2 Tax=Bacillaceae RepID=A3I6W7_9BACI Length = 523 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 4/106 (3%) Query: 183 IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 IQ + + G WTVE LA +A + R S++++F+D++G PL L +R++ A Q+ Sbjct: 164 IQYLHKYFGRDWTVEQLAELAEVPRWSYSRIFKDITGQIPLHYLNSIRIEKAKQLLMTTN 223 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYR----ERVRQLAP 284 V I++S+G+ +E F++ F G +PG+YR VR AP Sbjct: 224 DRVFEISQSIGFNNEYYFNRRFKEHVGISPGQYRRSQSNNVRVFAP 269 >UniRef50_A1R3X3 Transcriptional regulator, AraC family domain n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R3X3_ARTAT Length = 175 Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 56/101 (55%) Query: 177 PRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQ 236 P + + + + P WTV LA H+SRA+ A FR G +P+A LT RL +AA Sbjct: 58 PIVARALAALHQEPAAPWTVAELALRCHVSRATMAARFRAAVGQSPMAYLTTRRLALAAD 117 Query: 237 MFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + T+ VIAE VGY++ +F AF RE+G +P YR Sbjct: 118 RLASSTVTTAVIAEEVGYSNAFTFSAAFSREYGVSPSGYRR 158 >UniRef50_A9FWP2 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWP2_SORC5 Length = 304 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 59/103 (57%) Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 R+ V++ M E P W+VE+LA A +SRA+ A+ F G PL L +LR+Q AA++ Sbjct: 187 RVARVLRLMQEKPAERWSVEALAKAAGLSRAALARRFLAELGVPPLRYLAELRMQRAAEL 246 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + + +A VGY SE +F +AF R G PG +R R R Sbjct: 247 LAEGDGSLAAVAAEVGYDSEFAFSRAFKRHTGEAPGAFRRRSR 289 >UniRef50_B9QZW4 Transcriptional regulator, AraC family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QZW4_9RHOB Length = 268 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 5/143 (3%) Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G A+ ++C +R + + +L+ L PR+ + + E PG WT+E L Sbjct: 128 GGQAVFQRLCEIVVIRLLRHAMEGNEIDSGLLNGLSDPRVAQALVAIHEEPGENWTLERL 187 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A IA MSR FA F+ + G TP+ L+ RL IA + V +A G++S +S Sbjct: 188 AEIAGMSRTQFAVTFKSLIGITPMTYLSNWRLDIARDELA-AGRQVKAVANMCGFSSPAS 246 Query: 260 FHKAFVREFGCTPGEYRERVRQL 282 F +AF + +G P R RQL Sbjct: 247 FSRAFAKRYGAPP----RRARQL 265 >UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R353_9RHOB Length = 314 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 113/283 (39%), Gaps = 38/283 (13%) Query: 31 HGAGELSV--------IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLS---- 78 H AG+ S+ IR+H + +G+ L M L G+V L+P +A + Sbjct: 27 HFAGDFSIAIPTEQRRIRFHLVLRGSCWLCMEGEPPVFLEEGDVALIPNGAAQMIKSDPA 86 Query: 79 --------------------HVDN--ESTCIVCGTLRLQHSARY-FLTSLPETLFLAPVN 115 HV ++ ++CG + + L+SLP +L L + Sbjct: 87 LPSVGLGELLTGGALRDGCLHVGEGADTNSLLCGFCQFDEELDHPILSSLPASLRLRLQD 146 Query: 116 HSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ--VNTEKNILSL 173 E WL + + E+ G A+ +++ T + R A+ + + ++ Sbjct: 147 LGSE-PWLAATLKLIALEANFNGQGSSAILNRLIETIVIQSTRTLSARPSEDAQAGFIAA 205 Query: 174 LLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQI 233 L L I + P W V LA IA MSRASFA+ F G P+ + RL Sbjct: 206 LGDKSLSRAITEFHRAPEQNWQVTDLAEIAGMSRASFARHFIRHVGKPPMEYVRDWRLMR 265 Query: 234 AAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 A + + L IA GY S SF K F + FG PG +R Sbjct: 266 ARSLLTDTNLSSEEIATRCGYNSLPSFSKLFKKRFGMGPGTFR 308 >UniRef50_D0L3G6 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L3G6_GORB4 Length = 327 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 8/195 (4%) Query: 81 DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 D+ T ++ T R +R + SLP L +H + + + E +PG Sbjct: 123 DSRDTTMLIATYRAGEISRQVVESLPRISVL---DHPDD-----PLVALAEAEIVRTLPG 174 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 + + ++ A+R+ + + + P +G + M PGH WT+ +A Sbjct: 175 QEVVIDRLVDLILITAIRDLMDRSDAPPAYFRASRDPVVGPAVALMHTNPGHPWTLAGIA 234 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 +SRA+ A+ F ++ G P+ LT+ RL +AA + + + + IA VGY S + Sbjct: 235 QSVGVSRATLARRFTELMGEPPIGYLTRWRLALAADLLADPDISLRAIAHRVGYGSPFAL 294 Query: 261 HKAFVREFGCTPGEY 275 AF REFG +P Y Sbjct: 295 SSAFTREFGMSPTRY 309 >UniRef50_A9C0Z2 Transcriptional regulator, AraC family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C0Z2_DELAS Length = 356 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 114/270 (42%), Gaps = 35/270 (12%) Query: 40 RWHALTQGAAK------------LEMPTGEIFTLRPGNVVLLPQNSAHRLS-HVDNESTC 86 RW A T G A+ L +P L+P + V L ++ H +S + D + C Sbjct: 84 RWRASTAGRARASFHLILDGRCWLHLPGQPSVELQPRDGVFLSRDVPHFISPYADPDMAC 143 Query: 87 ------------------IVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVEYNWLREAI 127 + CG + R L + P+ L L +H++ + Sbjct: 144 APQAMRPATGDAGIGETALACGFFTFEGPMRGLLVDAFPDHLVLRGDDHAMSGASM--LF 201 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQML 187 ++ E+ A+ ++ F +R+ + I SLL P ++ ++L Sbjct: 202 DLMRAEALRTGTEPSAVMDRLVGLLFFYGLRQLAHGDARARGIWSLLRRPGFAPLVAELL 261 Query: 188 EMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 P W+V +A+ +SRA+F + F + G P L LR+Q+AA+ ++ + Sbjct: 262 REPARNWSVADMAARVCLSRATFFRQFAEACGQPPQQFLLLLRMQLAARRLAQGEA-IGQ 320 Query: 248 IAESVGYASESSFHKAFVREFGCTPGEYRE 277 +AE+VGY S ++F +AF R G PG ++ Sbjct: 321 VAEAVGYESYAAFSRAFKRVMGEQPGAWQR 350 >UniRef50_A8TQH1 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQH1_9PROT Length = 255 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 1/146 (0%) Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQM 186 I L E+++A G + S++ +R I + T ++S L PRL I M Sbjct: 94 IGLLLAEAQAARCGSGVVLSRLAEVLVIRLLRAEIERGATGSGLVSGLADPRLSRAIVAM 153 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 E PG W LA+IA MS + F + FR G TP A L + R+ +A Q R V Sbjct: 154 HEAPGRPWANVGLAAIAGMSLSRFTEAFRTRVGETPQAYLRRWRMTLARQDLDRGHR-VQ 212 Query: 247 VIAESVGYASESSFHKAFVREFGCTP 272 +A GYAS + +AF R++G P Sbjct: 213 SVARRYGYASSEALARAFQRQYGVNP 238 >UniRef50_B7VTG6 Transcriptional Regulator, AraC family n=7 Tax=Vibrionales RepID=B7VTG6_VIBSL Length = 279 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 109/247 (44%), Gaps = 15/247 (6%) Query: 34 GELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLR 93 G L V+R LT A +E L ++ LP ++ H + V E +VC + Sbjct: 37 GHLHVLRAGELTLSGAHMECRQ-----LSQPCIIYLPNSTPHVIEGV-GEGAELVCANVE 90 Query: 94 LQHSARY-FLTSLPETLFL----APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 + L++LP+ + + AP V RE+ Q S G L ++ Sbjct: 91 YRSGQMNPLLSALPDMIVIPFEDAPNLMPVIEVLFRES---GQASSGQQSSGQQYLMDKL 147 Query: 149 CATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 L R I Q + + S L HPRL AV+ + +P ++V +AS+A MSR Sbjct: 148 SDALMALIFRHLIEQQKIDSGVFSALAHPRLAAVVTAIHRLPARHFSVAEMASLAAMSRT 207 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 F + F+ G TP + K R+ + AQ + P+ +A+ VGY S S F +AF Sbjct: 208 QFIEAFKREVGETPGDYVQKWRVSV-AQSLLLQNKPINWVADEVGYNSYSGFSRAFQHVS 266 Query: 269 GCTPGEY 275 G +P ++ Sbjct: 267 GVSPRQW 273 >UniRef50_C8SUE3 Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SUE3_9RHIZ Length = 344 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 136 SAMPGVDALCSQICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAW 194 +A PG A+ ++ F +R +A++ K + L P +G +Q + P W Sbjct: 187 AAAPGSQAMLGRLMELLFVELLRRHVARLPPGSKGWFAALNDPIVGRTLQLLHADPARHW 246 Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM--FSRETLPVVVIAESV 252 TV +A SR A+ F + G P+ LT R+Q+A + F E+L IA V Sbjct: 247 TVGQIADKVGSSRTIVAERFNALLGRPPIEYLTGWRIQLAGERLRFGHESL--ASIAAGV 304 Query: 253 GYASESSFHKAFVREFGCTPGEYRERVRQLA 283 GY SE++F +AF R G TPG++RER + A Sbjct: 305 GYQSEAAFSRAFKRVTGITPGKWRERTGRRA 335 >UniRef50_C6W947 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W947_ACTMD Length = 309 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G + + ++ +R W A ++ L+ L PRL + M H WTV S Sbjct: 156 GSELVLGKLGDVLLVQVMRAWCAGSGDDRPGWLAALHDPRLSLATRAMHGDLAHPWTVAS 215 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA A MSR++FA FR+ +G +PLA LT R+ A + RE + IA VGY +++ Sbjct: 216 LAGRAGMSRSAFAAAFRERTGESPLAHLTYWRMHRAKALL-REGRTLQEIAVRVGYETDT 274 Query: 259 SFHKAFVREFGCTPGEYR 276 + +AF R G +PG +R Sbjct: 275 ALSRAFRRAEGVSPGRWR 292 >UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=Actinobacteria (class) RepID=D1AA08_THECD Length = 332 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 1/154 (0%) Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQ 185 + L+QE PG + + ++ ++R W + + L P +G ++ Sbjct: 154 VALLEQEMTRDEPGQEVMLDRLLDLLLITSLRTWFTRRRDAAPAWYRALADPVVGRALRM 213 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 M + P WTV +LA +SRA+ A+ F ++ G P+A LT RL +AA + V Sbjct: 214 MHQDPARPWTVAALAGRTGVSRAALARRFTELVGEPPMAYLTGWRLALAADLLREPEATV 273 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 +A VGY S +F AF R G +P +YR V Sbjct: 274 ASVARRVGYGSPFAFSAAFKRVRGVSPRQYRAMV 307 >UniRef50_A3YG00 Transcriptional regulator n=2 Tax=Proteobacteria RepID=A3YG00_9GAMM Length = 307 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 126/303 (41%), Gaps = 39/303 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHA-------LTQGAAKLEM 53 +D LS+++ L P+ T K L H + V R + + G A L + Sbjct: 3 IDPLSQIIALLNPEVTHSK---------LVHASAAFEVSRSDSNDAFYCLILSGKAYLNI 53 Query: 54 PTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPET-LFLA 112 TL G+ VL+P + S D +T + + Y + ET A Sbjct: 54 KHATQLTLNEGDFVLIPALGSFTFSS-DQTTTKEMQNKPQFGDDGIYRFGPISETPKIQA 112 Query: 113 PVNHS----VEYNWLREAIP----------------FLQQESRSAMPGVDALCSQICATF 152 V HS V+ L +P L +E+++ DA+ + Sbjct: 113 LVGHSKFTSVDKQLLVSLLPSYVLIQKEARLTKIASLLLEETQANRAAKDAIIEHLLQVL 172 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 A R Q +T ++L+ L R+ I+ + + P H W+V LA A +SR++F Sbjct: 173 MIEAFRSS-TQADTVTSLLAGLADARINPAIRAIHDTPHHPWSVTQLADQARLSRSAFYS 231 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G TP+A L R+ +A M ++ + V IA+ VGY S S+F AF R G +P Sbjct: 232 RFNRIMGVTPMAYLLNWRMTLAKHMLNQGNMRVSEIADKVGYGSSSAFSSAFTRHVGQSP 291 Query: 273 GEY 275 G Y Sbjct: 292 GSY 294 >UniRef50_C9YV93 Putative transcriptional regulator n=2 Tax=Streptomyces RepID=C9YV93_STRSW Length = 313 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 10/200 (5%) Query: 82 NESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEY-NWLREAIPFLQQESRSAMP 139 + +T ++ G R H L +LP L +N E WL A RSA Sbjct: 118 DGATALIVGAYRASGHRHERLLRALPPVLV---INEDTEVCAWLETAA--ADAALRSA-- 170 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G AL ++ +R W + +E + L P L ++ P WTVE+ Sbjct: 171 GSQALMDRLLDWALVCTLRTWFDRAGSEAPDWYRGLADPILAPALEAFHARPSKRWTVEA 230 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA+ + +SRA FA+ F V G+ PL ++ R+ A + S + IA+SVGYA Sbjct: 231 LATESGVSRALFAKRFTKVMGSPPLTYVSGCRMDEAEALLSDTDSSIARIAKSVGYADAF 290 Query: 259 SFHKAFVREFGCTPGEYRER 278 F AF R G +P +R R Sbjct: 291 GFSAAFKRRRGVSPSAFRAR 310 >UniRef50_A6E603 Transcriptional regulator, AraC family protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E603_9RHOB Length = 262 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEM 189 L E++S G +++ L +R I + +L+ L HPRL + + Sbjct: 107 LVAEAQSGRCGSQLAMARLFEAMLVLVLRRAIDAGPPDPGLLAGLSHPRLHRALIAIHAA 166 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA-AQMFSRETLPVVVI 248 P WTVE L++ A MSR+ F F D GT+PLA +T+ RL +A + ++PV Sbjct: 167 PARPWTVEMLSAEAGMSRSRFMADFSDCLGTSPLAYVTRWRLGLAHIALIQGASIPVA-- 224 Query: 249 AESVGYASESSFHKAFVREFGCTP 272 A SVGY + + F +A++R FG P Sbjct: 225 ARSVGYGTTAGFRRAWLRHFGDIP 248 >UniRef50_Q2SGY3 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SGY3_HAHCH Length = 331 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 35/289 (12%) Query: 15 GTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSA 74 G++ + L DW + A E I++H + G L T ++ L PG++ L + Sbjct: 30 GSLYFDSQLHGDWGMAVSASEY--IQFHCVAAGVCWLTTATEQV-RLSPGDIALCMRGQV 86 Query: 75 HRLSHVDNESTC------------------------IVCGTLR-LQHSARYFLTSLPETL 109 H LS+ + + ++CG + FL +LP+ L Sbjct: 87 HTLSYAPDVALATDQAYLESLRQGAPLFREGPFNNRLLCGHFAIMDRDTVPFLAALPDLL 146 Query: 110 FLAPVNHSVEY-NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE-WIAQVNTE 167 + + SVE+ N LR + ES+ + D S A + E + Q + + Sbjct: 147 VVRHQSKSVEWANALRGLL-----ESKKELESNDNPVSNRLAEALMIRFLEGYFQQQSQQ 201 Query: 168 KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLT 227 + ++ R+ + TVE +A MSR++F+ LF+ P+ L Sbjct: 202 GEPVGVIQDRRIARALNIFHRRYHEPLTVEQVAGAVGMSRSAFSVLFKRNLKQGPMEYLN 261 Query: 228 KLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 R A ++ + P+ ++ VGYASE++F +AF R + TPGEYR Sbjct: 262 SWRFYQARKILQQSHRPLSQVSLDVGYASEAAFSRAFKRRYDITPGEYR 310 >UniRef50_D2Q0X6 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q0X6_9ACTO Length = 278 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 128/285 (44%), Gaps = 23/285 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQL--PHGAGELSVIRWHALTQGAAKLEMPTGEIF 59 DALSRLL PQG + + L + WQ+ P GA L+++ + +G A L + Sbjct: 3 DALSRLLDDVRPQGVVVETADLSAPWQVRCPAGAA-LTLV---TMVRGTAVLTVDGETPA 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNEST---CIVCGTLRLQHSA-RYFLTSLPETLFL---A 112 L G+V L+ + L+ ES +V G+ + L LP L + A Sbjct: 59 ELAAGDVALVVGRRPYTLADGPAESADQAVLVTGSYEVGGGVCDRVLGGLPPVLLVESGA 118 Query: 113 PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI-L 171 V +V+ L E +A PG AL ++ A+R W+ + ++ Sbjct: 119 GVGRAVD---------LLTDELENARPGQRALLDRLLDLIVLTALRVWLDRPDSSAPPWY 169 Query: 172 SLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRL 231 P +G+ + M P WTV LA+ + MSRA+F++ F + G P++ LT RL Sbjct: 170 RAQQDPAIGSALALMHAEPARRWTVAELAASSSMSRAAFSRRFHALVGEPPMSYLTCWRL 229 Query: 232 QIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +A + + +A VGYA+ + AF R +G PGEYR Sbjct: 230 CLAGDLLRGTDDTLATVARKVGYANGYALSAAFTRFYGVRPGEYR 274 >UniRef50_D0LVV0 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVV0_HALO1 Length = 271 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 4/94 (4%) Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 ++Q L P WT+ LA MSR+SFA F D G P+ VL +LR+Q AA++ RE Sbjct: 178 LLQGELAFP---WTLAGLARCVGMSRSSFAAAFADEIGRGPMRVLFELRMQRAAELL-RE 233 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 PV +A+++GY +E+SF +AF R G PG + Sbjct: 234 KTPVAAVADALGYRAEASFRRAFRRYHGTPPGAF 267 >UniRef50_Q0JZZ7 Transcriptional regulator, AraC-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0JZZ7_RALEH Length = 347 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 61/101 (60%) Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 LHP+ + + + A +++LA +A++SR FA++F+ G TP+A + ++RL A Sbjct: 235 LHPQALSRVLDYIHGTPEAVKLQALADMANVSRFHFARMFKRSIGETPMAYVERVRLLRA 294 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +M P+ ++A VG+A +S F + F R FGCTPGE+ Sbjct: 295 REMIRSGDYPLALVATLVGFADQSHFGRRFKRHFGCTPGEF 335 >UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RUT1_9PROT Length = 346 Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 5/202 (2%) Query: 81 DNESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 D ST +VCG + + +LP L L W+ + ESR Sbjct: 133 DEASTVVVCGFVGCDLRPFNPLINALPRLLHLGAGGVGA---WVAPVLDQAVSESRQCRA 189 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G A+ ++ F A R + + + L+ L +G I + P WT++ Sbjct: 190 GSAAVLERVSEMVFVDAARRHLESLPADASGWLAGLRDRHIGKAIGLLHARPAEPWTIDE 249 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 L +SR++ Q F ++ G P+ LT R+Q A + V IA+ VGY SE+ Sbjct: 250 LGRQIGLSRSALHQRFVELVGQPPMQYLTNWRMQRGACLLREGDATVATIAQEVGYDSEA 309 Query: 259 SFHKAFVREFGCTPGEYRERVR 280 +F +AF R G P +R R Sbjct: 310 AFARAFKRLAGTPPAAWRRAQR 331 >UniRef50_C4DJ08 DNA-binding domain-containing protein, AraC-type n=3 Tax=Actinomycetales RepID=C4DJ08_9ACTO Length = 304 Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 56/103 (54%) Query: 177 PRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQ 236 P G ++ + P H WTV +LA+ A +SRA A+ F +V G PL LT+ R+ A Sbjct: 201 PVAGPALEAIHNRPQHLWTVGALAAEAKVSRAHLAKRFAEVMGQPPLKYLTEWRMYTAED 260 Query: 237 MFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + S + V +A +VGYA +F AF R G +P +YR V Sbjct: 261 LLSDSDMSVAEVARAVGYADPFAFSTAFKRHRGTSPRQYRSAV 303 >UniRef50_P35319 Putative araC-like transcription regulator n=6 Tax=Streptomyces RepID=ARACL_STRLI Length = 304 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 57/107 (53%) Query: 171 LSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLR 230 L+ L P + + + P +WTV LA A +SR++ A F+ G PL LT+ R Sbjct: 193 LAGLADPVVATALTCLHRDPARSWTVADLADTAAVSRSTLAARFKATVGQGPLEYLTRWR 252 Query: 231 LQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 +++AA+ + IA SVGY SES+ AF R G PG+YR+ Sbjct: 253 IELAARQLREGNATLASIAHSVGYGSESALSVAFKRVLGMPPGDYRK 299 >UniRef50_A9CLF9 Transcriptional regulator, AraC family n=5 Tax=Rhizobiales RepID=A9CLF9_AGRT5 Length = 299 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Query: 169 NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTK 228 +L + P+L ++++ E PG TVE LA A MSR++F + FR G P+ T Sbjct: 187 GLLRGMADPQLAPTLRRIHEDPGRNMTVEGLAQFAAMSRSTFFERFRREVGVAPMEYATG 246 Query: 229 LRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 R+ +A ++ R+ + IA+ VGY S S+F AF R G TPG Y Sbjct: 247 WRMALAKELL-RKDVATAEIAQRVGYGSASAFSVAFSRHVGQTPGAY 292 >UniRef50_D0XYL8 Transcriptional regulator, AraC family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XYL8_9CAUL Length = 322 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 27/298 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS ++ L P + K W + + A ++ + + +G + Sbjct: 1 MDPLSDIITLLRPSSIVSKPITGRGRWGVRYAAHDMPG--YTIILKGRCWIAFEGQAPMA 58 Query: 61 LRPGNVVLLPQNSAHRLS------------------HVDNESTC---IVCGTLRLQHSAR 99 L G+ +LLP A L H D E + G R++ + Sbjct: 59 LEEGDFLLLPSTPAFVLGSHPDVDGPSRDPSDAPVRHGDQEGEAQFESLGGAFRIERANA 118 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 L +L + P + L I + QE PG D + ++ A+R Sbjct: 119 PLLLALMPRMIHIPASEGRTAR-LGTLIGLIVQECAREDPGKDMILQRLLEVLLVEALR- 176 Query: 160 W--IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 W +A + +L + P L V+ M WTV LA +A +SR++FA F + Sbjct: 177 WRPVAGDDARTGLLRGMRDPALARVLSAMHSDVRAHWTVAGLAKVAGLSRSAFAARFGEA 236 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G P+ L + R+ +A + IA+ +GY S S+F AF + GC+PG + Sbjct: 237 LGCGPIEYLARWRMALAKDALIGGAKTLDRIADEIGYESASAFSTAFRKRLGCSPGRF 294 >UniRef50_B5GM94 Helix-turn-helix domain-containing protein n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GM94_STRCL Length = 324 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 157 VREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R W Q + L L +G ++ M + P WT+ +LA+ + +SR + AQ F Sbjct: 165 LRGWFDQPDGPPTGWLGALTDDTVGPALRAMHDAPERPWTLAALATASGVSRTTLAQRFT 224 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + G PL LT R+ +AA + + T + +A VGYA F AF R G +P Y Sbjct: 225 RLVGRPPLTYLTDWRMALAADLLTESTATLAAVARQVGYADAFGFSAAFKRVHGVSPSAY 284 Query: 276 RE 277 R+ Sbjct: 285 RD 286 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 52/90 (57%) Query: 192 HAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAES 251 H ++ LA ++H S+ F+++F V+G TP A +TK RL AA V+ IA Sbjct: 21 HKLNLDQLAELSHFSKYHFSRIFASVTGETPFAYITKQRLARAAAYLRETNQSVLEIALG 80 Query: 252 VGYASESSFHKAFVREFGCTPGEYRERVRQ 281 G+ S SSF+ AF + FG TP E RE+ RQ Sbjct: 81 CGFESASSFNAAFKKHFGRTPTEMREQARQ 110 >UniRef50_B5GNS1 AraC-family transcriptional regulator n=2 Tax=Streptomyces RepID=B5GNS1_STRCL Length = 377 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 8/199 (4%) Query: 84 STCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 +T ++ G +++ S + LT+LP + V + + QE +PG Sbjct: 182 TTVLLKGVYQVEGSVSDRVLTALPRVALVPSVPEGCP------PLAMIAQELARDIPGRQ 235 Query: 143 ALCSQICATFFTLAVREWIAQVNTEKNI-LSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++ ++REW A ++ P++G ++ M P WTV SLA+ Sbjct: 236 VILDRLLDLLLVTSLREWFALPGSDAPAWYRAHGDPQVGRALKLMHGDPARPWTVASLAA 295 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 SRA FA F ++ G +P+A LT+ R+ AA + +R V ++ VGY++ + Sbjct: 296 AVGASRARFAHRFTELVGQSPMAYLTEWRICRAADLLARTDATVDAVSRQVGYSNAYALS 355 Query: 262 KAFVREFGCTPGEYRERVR 280 AF R G P E+R R Sbjct: 356 VAFKRTRGVRPSEHRALAR 374 >UniRef50_D2B8S3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B8S3_STRRD Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 57/119 (47%) Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 + E+ +HP + A I + P H W ++ LA ++ A +LF G TPL Sbjct: 169 DPERETPESAIHPAVAATIARFEAAPAHPWRLDDLARAVNLDPAYLGRLFGRHVGLTPLG 228 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 L +LR + AA + + TLP + +VG+ + F + F G TP EYR R R A Sbjct: 229 FLARLRAERAATLLAHSTLPAARVGAAVGWDDPTYFARRFRTLVGLTPTEYRRRSRSTA 287 >UniRef50_C0XNW0 AraC family transcriptional regulator n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XNW0_9CORY Length = 316 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 3/199 (1%) Query: 81 DNESTCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 D T ++CG + + +LP + +N + + + + + + L E + Sbjct: 111 DGSFTRLLCGMVSFDAPDVHNIVQALPPVVSARGMNLN-DASSVVKLVGLLADELSADRL 169 Query: 140 GVDALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G +A+ ++ +R+W + ++ E +++ L P +G V+ + + P W + Sbjct: 170 GGEAVAVRLADIIVVQIIRKWFYEESSFEPGLIAGLADPAIGRVLHAIHDEPEKPWAIAD 229 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 +A I+ MSR SF + FR+V G P A +T R+++A P+ V+ SV Y+SES Sbjct: 230 MAKISAMSRTSFIEKFREVVGVAPAAYVTNWRMEVAKTRLIETNEPIAVVGSSVSYSSES 289 Query: 259 SFHKAFVREFGCTPGEYRE 277 +F KAF R G +P +R+ Sbjct: 290 AFSKAFARSVGISPSAFRQ 308 >UniRef50_UPI000178921D transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178921D Length = 318 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 19/261 (7%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCG 90 H A EL+ I QG + G R G+++ + N HR +N ++ Sbjct: 59 HHALELNYI------QGGTGFILINGMKLPFRQGDIIFINSNDLHRAYETENLVMDVIMF 112 Query: 91 -------TLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 L+ SL +PV ++ L + + +E ++ + Sbjct: 113 EPSLLSIDLKFDPDLMAPFRSLGNVDRQSPV-----HDELARLLRRMMEEYKARGTSYMS 167 Query: 144 LCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 L F +LA R + + I +H L V++ M + WT++ L+ + Sbjct: 168 LIRSDLIRFLSLANRHLSSPAQEHRPIKGRGMHA-LKEVLRTMELHLDYGWTLQELSDLT 226 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 H+S + F+ LF+ GT+P L +LRL A + ++ IAE+ G+ + S+F++ Sbjct: 227 HLSPSRFSALFQQAVGTSPHHYLIQLRLTHAVHLLETTDQKIIEIAETCGFRNLSNFNRL 286 Query: 264 FVREFGCTPGEYRERVRQLAP 284 F + G +P E RER +P Sbjct: 287 FKQHVGASPSEIRERAYAGSP 307 >UniRef50_Q0KAF9 Transcriptional regulator, AraC-family n=9 Tax=Bacteria RepID=Q0KAF9_RALEH Length = 334 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 102/242 (42%), Gaps = 13/242 (5%) Query: 42 HALTQGAAKLEMPTGEIF--TLRPGNVVLL--PQNSAHRLSHVDNESTCIVCGTLRLQHS 97 H L +G +L P G +LR LL P+ H + E + C L Sbjct: 56 HVLRRGELELRHPPGSGLPGSLRFDEPTLLFYPRPVHHMFHNPPQEGSDFTCAALDFDGG 115 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 AR + L P+ H L +++ L E+ G L ++ + Sbjct: 116 ARNPVVRALPPLIALPLAHVAG---LEQSLALLFAEAGQVRCGHRLLADRLFEVVLIQLL 172 Query: 158 REWIAQVNTEKNILSLLL----HPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 R W+ + E I + L+ PRL + + E PG W + +A+ A MSR++FA Sbjct: 173 R-WLIDHHQEAGIQAGLIAGLSDPRLARALVALHEAPGEPWDLPRMAARAGMSRSAFAAT 231 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 FR V G P LT RL + AQ R PV +A +GYA+ S+ +AF G +P Sbjct: 232 FRLVVGQPPADYLTDWRLTL-AQAQLRLGRPVKSVALELGYANASALSRAFTARLGQSPR 290 Query: 274 EY 275 ++ Sbjct: 291 QW 292 >UniRef50_A8GL35 Transcriptional regulator, AraC family n=2 Tax=Serratia RepID=A8GL35_SERP5 Length = 257 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 133 ESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGH 192 E++S G ++ ++C L +R IA + +L+ L HP L + M + P Sbjct: 109 EAQSPRCGTVSVQDRLCEVIIVLVIRRAIAAGAVKAGMLAGLAHPALHRSLVAMHDEPAC 168 Query: 193 AWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA--AQMFSRETLPVVVIAE 250 W+VE LA A MSR+ F + F V G TP A LT RL + A M R V +A Sbjct: 169 KWSVERLAQTAGMSRSHFIERFGTVVGETPGAYLTAWRLTLGRKALMSGRS---VKQVAY 225 Query: 251 SVGYASESSFHKAFVREFGCTPGEYRE 277 VG+ S +F +AF ++G P ++ Sbjct: 226 QVGFGSVEAFSRAFSAKYGVPPSSVKK 252 >UniRef50_C9XTT1 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9XTT1_CROTZ Length = 326 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 1/156 (0%) Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLE 188 L ESR+ PG D + + ++R A T IL L H R+ + + E Sbjct: 160 LLLDESRARRPGRDVVMMHLLQLLLVESLRSDPALSKT-AGILRGLQHDRVATALHLIHE 218 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 PG W + LA MSR+SF +F + G +P+ L R+ +A + + I Sbjct: 219 KPGADWQIAQLARECAMSRSSFFAVFSETVGMSPMQYLFFWRMSLARKALISGQDNIEQI 278 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 A GY S S+F AF + G PGE+R R R P Sbjct: 279 ALRTGYQSASAFSVAFAKHAGMPPGEFRRRSRTARP 314 >UniRef50_C6B325 Transcriptional regulator, AraC family n=5 Tax=Alphaproteobacteria RepID=C6B325_RHILS Length = 331 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 1/159 (0%) Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN-TEKNILSLLLHP 177 + +WLR I + +E G ++ ++ F +R I + L+ L P Sbjct: 168 DGDWLRATIRQMVEEVDRPRAGGVSMLPRLTEIIFIEILRHQIMMAEPSSVGWLAALADP 227 Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 L + + + P W++E LA+ + MSR++ A+ F+ + T+P+ + RL +A+ Sbjct: 228 SLSRCLSLIHDDPRRDWSLEQLAAASGMSRSALAERFQAMLSTSPIRYIRDWRLYLASVA 287 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 + P+ IA GYA+E++F++AF R F P +R Sbjct: 288 LATSGQPIAAIAYEAGYATEAAFNRAFSRAFATPPAAWR 326 >UniRef50_Q5YVF5 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5YVF5_NOCFA Length = 328 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 1/153 (0%) Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI-LSLLLHPRLGAVIQQML 187 L +E + PG + ++ +R W+ + + L P G ++ + Sbjct: 159 LLLREISADRPGQQVMLDRLLDLLLVSTLRCWLDDLGADGPPWYRALGDPVAGPALRAIH 218 Query: 188 EMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 + P AWTV LA A +SRA+FA+ F ++ G P+ LT R+ +AA R + Sbjct: 219 DDPAAAWTVAELARRAGVSRAAFARRFTELVGEPPMTYLTGWRVALAADRLRRTDDTLGA 278 Query: 248 IAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 IA +VGY+ + AF R G PGE+R R Sbjct: 279 IARAVGYSDGYALSAAFTRVKGLRPGEFRRACR 311 >UniRef50_A9MI90 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MI90_SALAR Length = 294 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 53/99 (53%) Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 +I +M++ P + W V+ +A +M+ SF F+ +SG TP L K RL Q+ Sbjct: 183 LILEMIKSPDYPWRVKDMAKEYNMNPNSFISEFKKISGFTPCNFLKKTRLNRGRQLLENT 242 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +PV VIA GY S +SF F +E+G +P + R + Sbjct: 243 DIPVAVIARQCGYNSHASFAFYFKKEYGLSPLKMRNNAQ 281 >UniRef50_B2TM72 AraC-family transcriptional regulator n=3 Tax=Clostridium botulinum RepID=B2TM72_CLOBB Length = 291 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/271 (22%), Positives = 119/271 (43%), Gaps = 19/271 (7%) Query: 27 WQLPHGAGELSVI-RWHA------LTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSH 79 + + G E S+I WH + G L++ T +T + G+++L+ S H S Sbjct: 22 YNVSLGNIEKSIIAHWHNEIELILVLSGEFNLKINTDS-YTCKDGDIILINSGSLHYFST 80 Query: 80 VDNESTC---IVCGTLRLQ-----HSARYFLTSLPETLFLAPV---NHSVEYNWLREAIP 128 +NES+ IV +L + + F+T + F PV S+ N L+ I Sbjct: 81 KENESSTWNSIVFNMDQLNSNILDNCSVNFITPIINNEFKLPVIIHKDSLINNELKCIIL 140 Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLE 188 + S G + + +F+L + + + T L+ ++ V++ + E Sbjct: 141 NIIDTYNSKYYGFELEIKSLIFKYFSLLFKFNLVKKKTNNTCLNEEKIEKIKIVLEYIQE 200 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 + L++I H +++ F + F+ +G T + + RL+ AA + S L + I Sbjct: 201 NYNKEIDINRLSAICHYNQSHFMRFFKKHTGKTCIQFIKNYRLEKAASLISNTDLSITEI 260 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERV 279 + VG+ + S F ++F ++ TP ++ R+ Sbjct: 261 SLEVGFTNISYFIRSFKEKYNTTPKGFKTRL 291 >UniRef50_B0AA61 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AA61_9CLOT Length = 300 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCG 90 H E+ VIR + G+ L + + F L G+ V + N H + +E CI+ Sbjct: 45 HWHEEIEVIR---VKSGSIHLYLDNSD-FVLNEGDGVFINSNILHYIRAGTSEE-CILNS 99 Query: 91 TLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQES--RSAMPGVDALCSQI 148 + ++ + S+ E F+ P+ VE L I F + S A + SQ Sbjct: 100 LVFNKNLISGGVQSVFEQNFVNPI---VENKNL-SGIAFYKNTSWGEEASACIKNAFSQF 155 Query: 149 CATFF--TLAVREWIAQV-----------NTEKNILSLLLHPRLGAVIQQMLEMPGHAWT 195 + F + VRE+++ + N KN + L R+ ++ + + T Sbjct: 156 EKSEFGYEILVREYLSHIWYIMLKNIQDLNLNKNNRNDLNSERIKNILSFVHKNYNKQIT 215 Query: 196 VESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYA 255 + +A + ++S + F++ G +P+ + K R+ IA +M P+ +I+++VG+ Sbjct: 216 LNDIAKVVNLSERECLRCFKNTLGISPIQYILKYRVSIATKMLRENKDPITIISDAVGFD 275 Query: 256 SESSFHKAFVREFGCTPGEYRERVR 280 S S F K F R G TP +YR + + Sbjct: 276 SPSYFSKIFKRFIGITPTQYRNKSK 300 >UniRef50_B9XR23 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobiales RepID=B9XR23_9BACT Length = 312 Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 1/149 (0%) Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQM 186 I +++E+ G + +++ A+R + +N +L+ L P+L ++ + Sbjct: 150 IELIKREALEKRAGQSLVLTRLIEIMLVEALRSVQSDLNAT-GLLAGLRDPQLATALRGI 208 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 H WT+ +LA A MSR+SFA F V G TPL L RL +A M + V Sbjct: 209 HTRTEHPWTLATLAREAGMSRSSFAARFGRVIGMTPLNYLLHWRLSVAKAMLNSGQKTVT 268 Query: 247 VIAESVGYASESSFHKAFVREFGCTPGEY 275 A +VGY S S F AF RE G +P ++ Sbjct: 269 ETALAVGYESASGFSTAFSRETGQSPKQF 297 >UniRef50_C9PQP0 AraC family transcriptional regulator n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PQP0_9PAST Length = 275 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 1/144 (0%) Query: 132 QESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPG 191 QES S G A+ + A +R + Q + + +L L L V+ M + P Sbjct: 124 QESESQEYGFQAIIHHLSAYLTLQVIRCCLKQNHFKTGLLKGLTDKYLAPVLLDMHQRPE 183 Query: 192 HAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAES 251 + W ++ LA+ A MSR+ FA F+++ G +P+ LT R+ +A + + + +A+ Sbjct: 184 YNWKLDELATKAAMSRSKFAVYFKNILGISPMEYLTHWRITLAQTLLLKGK-SLTQVADD 242 Query: 252 VGYASESSFHKAFVREFGCTPGEY 275 VGY+ ++ +AF+R G +P ++ Sbjct: 243 VGYSHNAALTRAFLRIVGKSPTDW 266 >UniRef50_A6WBY5 Helix-turn-helix-domain containing protein AraC type n=8 Tax=Actinomycetales RepID=A6WBY5_KINRD Length = 323 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 177 PRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQ 236 P G +Q + P WTV +LA +SRA+ A+ F D+ G PL LT+ R+ +AA Sbjct: 208 PVAGRALQLLHAEPAAPWTVAALAGRVGVSRATLAKRFSDLVGEPPLTYLTRWRMTLAAD 267 Query: 237 -MFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + R L V +A SVGYA F AF R G +P E+R Sbjct: 268 LLLDRPELTVAGVARSVGYAEPFGFSAAFKRVRGLSPSEFRR 309 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 58/89 (65%), Gaps = 3/89 (3%) Query: 191 GHAWT---VESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 GH T +++LA++A++S F ++F+ + G +P+A + +LR++ AAQ+ TL V Sbjct: 22 GHLDTSIKIKTLANVANLSDFHFCRIFKALKGESPIAFIARLRIETAAQLLRYSTLSVEE 81 Query: 248 IAESVGYASESSFHKAFVREFGCTPGEYR 276 IA ++GY + +S KAF ++G TP +YR Sbjct: 82 IAFNIGYETPASLSKAFKNQYGITPTQYR 110 >UniRef50_C0ABA0 L-rhamnose operon transcriptional activator n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ABA0_9BACT Length = 297 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 5/151 (3%) Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEM 189 ++ ES++A G +A+ + L R + AQ +T ++ L ++G ++ + + Sbjct: 152 IENESKAAQEGHEAVLLSLLVELMVLLSRHY-AQSDTRESHALL----QVGQLVSMLEQR 206 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 G WT+E LA A +SR++ ++FR +G +P+ L LR++ A ++ R L + IA Sbjct: 207 FGEPWTLEQLAEQARVSRSNLLRMFRQATGQSPIDFLIGLRIEAARRLLRRSDLGMTEIA 266 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYRERVR 280 G++ + F + F + G TP YR ++R Sbjct: 267 LECGFSDGNFFPRQFRKTCGVTPSIYRRQMR 297 >UniRef50_C9PGE8 Transcriptional regulator AraC family n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PGE8_VIBFU Length = 229 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 183 IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 IQQ ++ A LAS++++S F +LFR+ +G TP L R++ A QM Sbjct: 132 IQQHID---EALPTSRLASVSNVSAGHFHELFREAAGMTPGQYLFTARMKRARQMLQDTR 188 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 LP++ IAE VG++S+S+ AF R FG TPG+ R ++ Sbjct: 189 LPLIEIAEKVGFSSQSALTHAFRRFFGETPGQVRRKM 225 >UniRef50_B5JHR7 Transcriptional regulator, AraC family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHR7_9BACT Length = 316 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 7/148 (4%) Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVR-EWIAQVNTEKNILSLLLHPRLGAVIQQMLE 188 L E R M G +A + A F L V + Q N +LL R+ VI + + Sbjct: 165 LDNEVRGKMEGYEA---AMFAKFVELVVYLSRLYQETESTNAEALL---RVAKVIGSIED 218 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 W VE A++AHMSRA+F ++FR +G TP+ L +LR+Q + + + L + I Sbjct: 219 EFTKPWKVEDFAAMAHMSRANFMRVFRTATGETPINYLLQLRIQKSMTLLTSTKLSISEI 278 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYR 276 A VG+ + + + F G +P YR Sbjct: 279 AFEVGFNDSNYYTRQFKASQGISPLAYR 306 >UniRef50_B5ZFX2 Transcriptional regulator, AraC family n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZFX2_GLUDA Length = 315 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 7/212 (3%) Query: 76 RLSHVDNEST---CIVCGTLRLQHSARYFLTSLPETLFLAPVNHS-VEYNWLREAIPFLQ 131 RL D+ ST C V G L+ + L L PV H+ V L + + Sbjct: 101 RLMQTDDPSTNVTCFVAGAFVLEAPNAALVADLIPPLL--PVLHNDVAAERLGMLLGLVG 158 Query: 132 QESRSAMPGVDALCSQICATFFTLAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMP 190 E+ + PG + ++ +R A + +L+ L +L +Q + Sbjct: 159 DEATTTRPGRSLILDRLIEIILVETLRTRPDALPGHAQRLLTALGDQKLARALQIIHGEA 218 Query: 191 GHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAE 250 WTVE LA A MSR++FA F GT+P+ T+ R+ A M + +P+ IA Sbjct: 219 SPPWTVERLARHAGMSRSAFADRFARTLGTSPINYATQWRINQARSMLASRDMPMAQIAR 278 Query: 251 SVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 G+ S S+F AF R G +P Y + L Sbjct: 279 QAGFQSVSAFSTAFSRVVGVSPTAYARSLEML 310 >UniRef50_A9F1M5 Putative araC-like transcription regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F1M5_SORC5 Length = 373 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 113/290 (38%), Gaps = 47/290 (16%) Query: 23 LGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI-FTLRPGNVVLLPQNSAHRLSHVD 81 L + W L AG + H +T+G+ LE+ G + G++V++P H L Sbjct: 53 LTAPWALRFPAGGRGI---HIVTRGSCWLEVDGGRAPAAVASGDLVVMPSGRGHVLRDAR 109 Query: 82 NES--------------------------TCIVCGTLRLQHSARYFLTSLPETLFLAPVN 115 T IVCG R L +LP L L Sbjct: 110 GPRKASLIEELVRGASPGRAIEHGGAGLPTTIVCGQFRFGTLGHPALEALPPVLHLRGDE 169 Query: 116 HSVEYNWLREAIPFLQQ-------ESRSAMPGVDALCSQICATFFTLAVREWIAQV-NTE 167 PF+Q E + G + +++ A+R ++ V E Sbjct: 170 R---------IGPFIQAHTQCIAAEVSAPAEGAAIVTARLSDVLLVQALRAYLRDVPADE 220 Query: 168 KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLT 227 + L L P++G + +M P W+V +LA A MSRA+F+ F + G +P L Sbjct: 221 RGWLRGLADPQIGRALARMHRSPELDWSVPALAQEAGMSRAAFSARFSEQMGVSPGKYLA 280 Query: 228 KLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 R+ A + V +A +VGY SE++F AF R G +P YR+ Sbjct: 281 DWRMYRAKVLLRSGPALVAEVAAAVGYRSEAAFSFAFKRLVGSSPSAYRD 330 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 3/106 (2%) Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 R+ V++ +L PG T++SLA+IAHMS F +++R V G + + + +LRL AAQ Sbjct: 13 RIARVVEAILVEPGARHTLDSLAAIAHMSPYHFHRIYRAVMGESVVDTVKRLRLAEAAQR 72 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREF-GCTPGEYRERVRQL 282 + + + +A GY S +F +AF R+F G +P E+R R R L Sbjct: 73 LT-DAAQITAVAHDAGYDSPQAFARAF-RDFTGVSPSEFRTRQRHL 116 >UniRef50_Q5QL43 Two-component response regulator n=2 Tax=Geobacillus RepID=Q5QL43_GEOKA Length = 258 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 183 IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 IQ +P T+ +AS+ ++S++ F++LF+ +G T + LT++R+Q + + + Sbjct: 155 IQDNYHLP---LTLNEVASMVYLSQSHFSRLFKSATGMTFVEYLTQVRIQKSKYLLKMSS 211 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 LP+ VIA G+++ S F F R G TP EYRE ++++ P Sbjct: 212 LPIDVIAHKTGFSNASYFATTFKRLEGKTPTEYRELLQKIYP 253 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 62/106 (58%) Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 R+ V++ +L PG T+ESLA++AH+S F +++R ++G + + + +LRL AAQ Sbjct: 13 RIARVVEAILLEPGAHHTLESLAAVAHLSPFHFHRVYRALTGESVVETVQRLRLAQAAQR 72 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 + V +A GY S +F +AF G +P E++ R ++LA Sbjct: 73 LTDAAASVTTVAHDAGYNSPQAFARAFRGFTGVSPSEFKARQKRLA 118 >UniRef50_A6VS98 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Proteobacteria RepID=A6VS98_MARMS Length = 308 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 130/304 (42%), Gaps = 40/304 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS ++ L P+ K W++ E+ + + +G+ + + E Sbjct: 2 IDPLSSIVTLLQPKAAFSKVVHAAGKWRIRRE--EIGNPFYCVVLEGSCEFTLKGDEPIY 59 Query: 61 LRPGNVVLLPQN------SAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETL----- 109 L G+ VL+P+ S+H + D ++ I ++ YF + L Sbjct: 60 LTAGDFVLVPEAHAFTVASSHPPALTDADTVPIKTA------ASTYFAGEAEQELNAHLL 113 Query: 110 -----FLAPVN-----------HSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 F AP + H E L + + +ES + PG D++ +++ Sbjct: 114 IGHCQFEAPDSKILISLLPKLVHLREAKRLATLVELVIEESLAQRPGRDSVLARLLEILL 173 Query: 154 TLAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 A R +++T + +L L RL I+++ + AWT++ LA A +SR+SF Sbjct: 174 IEAFR---TKMDTPEVPGLLVGLADERLAMAIRKIHQDVSKAWTIDQLAKEASLSRSSFF 230 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 Q F G TP+ + R+ IA + R+T + IAE +GY S S+F AF + G Sbjct: 231 QRFSKAVGYTPMEYVIAWRMAIAKDLLRRQTFTMATIAERIGYQSASAFSSAFSKYTGQA 290 Query: 272 PGEY 275 P ++ Sbjct: 291 PSKF 294 >UniRef50_D0LQY3 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQY3_HALO1 Length = 313 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 119/286 (41%), Gaps = 39/286 (13%) Query: 22 VLGSDWQL--PHGAGELSVIRWHALTQGAAKLEMPT-GEIFTLRPGNVVLLPQNSAHRLS 78 VLG+ W L P E ++A+ QG +L + E L PG+V ++P+ S H+ Sbjct: 19 VLGAPWALRIP----EKPTSSFYAVAQGQPRLLVNGHAEPLCLAPGDVAIVPRGSGHQFD 74 Query: 79 HVDNES-------------------------TCIVCGTLRLQHSARY-FLTSLPETLFLA 112 D + T ++ G AR+ L +LP L L Sbjct: 75 DGDRRAPPRQGFIDGAALRSATGMLGGAGAKTILIAGCFTFSVGARHPLLRALPAALHLP 134 Query: 113 PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI-L 171 H+ L I + ES + PG + +++ A+R AQV N L Sbjct: 135 --AHAPPRPELAATIQLITAESATPRPGSALILARLADVLLMQALR---AQVTLSANGGL 189 Query: 172 SLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRL 231 L P +G + + WTV +LA+ +SR+ FAQ FR + G PL L R+ Sbjct: 190 RALSDPVVGPALSLIHTRYRAPWTVAALATAVGVSRSGFAQRFRALLGEPPLRYLVGWRM 249 Query: 232 QIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 AA + V IA+ VGYAS ++F KAF + G P +R Sbjct: 250 TKAAARLRVTSDSVAEIADEVGYASAAAFSKAFKQWAGVGPDAFRR 295 >UniRef50_C7Q0G5 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q0G5_CATAD Length = 325 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 9/195 (4%) Query: 84 STCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 +T ++ G +L+ A R L LP + + + A+ L E+ PG D Sbjct: 123 ATTMLRGMFKLRGEAGRRLLAMLPPLVVIPAAPRT------GAALDLLAAETTLDEPGQD 176 Query: 143 ALCSQICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 A+ + LA+R W A + + + + L P +G+ + + P H WTV LA+ Sbjct: 177 AVLHRSLDLVLVLALRSWCASLGPADPSWYAALTDPAIGSALDHIHTDPAHHWTVAELAA 236 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES-SF 260 IA +SRA+FA F + G P+ L R+ +AA + + V A ++ +F Sbjct: 237 IAGLSRAAFAARFTQLVGQPPMTYLAGWRMTLAADLLREDAGTTVAAAAQAVGYQDAFAF 296 Query: 261 HKAFVREFGCTPGEY 275 AF R G +P + Sbjct: 297 SVAFKRAKGMSPSRW 311 >UniRef50_A1UBR1 Transcriptional regulator, AraC family n=5 Tax=Mycobacterium RepID=A1UBR1_MYCSK Length = 320 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 6/209 (2%) Query: 70 PQNSAHRLSHVDNESTC-IVCGTLRLQHSARYFLTSLPETLFLAPVNHS-VEYNWLREAI 127 P N R D ++ ++ G R + L L + L V H + L + Sbjct: 110 PVNGVARHGDPDGPASMRMLGGYFRFERENAPLLAPLLPRIVL--VRHDEPRASRLSRIV 167 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQM 186 + +E+ SA P + + ++ A+R A V E+ +++ L P L +++M Sbjct: 168 ALISEETGSAAPS-ELILVRLVEVLLVEAMRLRAAPVEGVERGLVAGLDDPVLAPALRKM 226 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 WTVE LA A +SRA FA+ F G P+ L + R+ +A +M E + + Sbjct: 227 HTDIAFGWTVERLARAAGVSRAVFAERFSRTMGMPPMQYLAQWRMALAKEMLRTEDVSIA 286 Query: 247 VIAESVGYASESSFHKAFVREFGCTPGEY 275 +A GY S S+F AF R G +P + Sbjct: 287 EVARRTGYLSASAFTTAFTRMTGTSPSAF 315 >UniRef50_D1VIA8 Transcriptional regulator, AraC family n=1 Tax=Frankia sp. EuI1c RepID=D1VIA8_9ACTO Length = 279 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%) Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 PG WT E +A +AH+SR++ FR +G +P+ +L +LR+ A + + + PV +A Sbjct: 181 PGEDWTPERMARLAHLSRSALTARFRRATGRSPMEILRELRMHHARTLLTDGSQPVGRVA 240 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYR 276 +VGY S ++F +AF G P +R Sbjct: 241 SAVGYRSVAAFSRAFAAHHGAAPQAWR 267 >UniRef50_A9CGU4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGU4_AGRT5 Length = 321 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 7/210 (3%) Query: 70 PQNSAHRLSHVDNEST---CIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREA 126 PQ+ A R H + E + G+ + L SL L P + L Sbjct: 101 PQDRAVR--HGEQEGMPDFLALGGSFAFERINASLLLSLMPGLIYVPAAEK-RASRLARL 157 Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQ 185 I L +E PG + + ++ A+R A V ++ + P L + Sbjct: 158 IELLSEECAGEDPGKELIIRRMLEVLLVEALRRPDAGNVAIPAGLVKGMRLPGLARALSA 217 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 M +WTV LA IA MSR++F+ F ++ G P+ L + R+ +A R + Sbjct: 218 MHADVRASWTVAELAGIAGMSRSAFSARFLEMVGCAPIEYLARWRMALARDSLIRGVKSL 277 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEY 275 IA+ +GY S S+F AF R G PG + Sbjct: 278 DHIADEIGYESASAFSTAFRRRMGIAPGSF 307 >UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B4_EUBE2 Length = 291 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 58/100 (58%) Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 +L V+ + + A ++E +A H S++ F + F++ +GT+ + L RL IAA++ Sbjct: 192 KLKLVLNYIEKNFARAISIEEIAQWCHFSQSHFMKFFKNCTGTSFITYLNDYRLIIAARI 251 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 T PV+++A G+ + S F++ F ++G +P E+R+ Sbjct: 252 LKTTTQPVIIVASDCGFDNISYFNRKFKEKYGVSPREFRK 291 >UniRef50_Q6FBY5 Putative transcriptional regulator (AraC family) n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FBY5_ACIAD Length = 281 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 59/102 (57%) Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 RL ++ + E P ++++ LAS ++ A F ++FR+ +G TP + K RLQ A + Sbjct: 179 RLHHILNMIREHPEQEFSLDILASEIDLTPAHFCRMFREATGITPHQYILKCRLQRAEHL 238 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + L + ++AE+ G+ S+S F + F+++ G P + R R+ Sbjct: 239 LNNSDLSISMVAEASGFNSQSHFTRLFLKKMGKNPSDLRRRL 280 >UniRef50_Q885H7 Transcriptional regulator, AraC family n=5 Tax=cellular organisms RepID=Q885H7_PSESM Length = 320 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 9/98 (9%) Query: 192 HAW---------TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 HAW +V LA MS +FA+ + +V+G+TP ++ +LRL+ A + + Sbjct: 220 HAWLNNNLSGDLSVSVLADFMSMSERTFARKYSEVTGSTPSKMVEQLRLEAARHLLVTSS 279 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 P+ +A G +ES+F ++FV+ + TP EYRER + Sbjct: 280 APLKTVASKCGLGNESTFIRSFVKNYAVTPREYRERFK 317 >UniRef50_C6D1W5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1W5_PAESJ Length = 221 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 8/119 (6%) Query: 169 NILSLLLHP-RLGAVIQQMLEM-------PGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 N+ L HP R G I+Q E+ P TVE LA H+S++ F L++D+ G Sbjct: 103 NLHELSQHPERPGRYIRQFSELRDELYNSPQSHVTVEMLADRVHLSKSYFQHLYKDIFGC 162 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + + + RL++A + TL V IA S GY E+ F + F + G TP +++ RV Sbjct: 163 SVVTDMINGRLELAKYLLKNSTLSVSAIAASCGYEHETHFMRQFKKFVGLTPSQFKSRV 221 >UniRef50_B0MQ29 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ29_9FIRM Length = 264 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 54/104 (51%) Query: 176 HPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAA 235 H R + + MP H V+ LA+ A MSR+ F L++ + GTT + + + R + A Sbjct: 161 HYRFTQIRTMIFTMPDHVGNVDDLAAQAGMSRSGFQHLYKKLFGTTVIKDIIEGRTKRAK 220 Query: 236 QMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 ++ S L + I+ GY +E SF + F + G TP EYR + Sbjct: 221 RLLSSTRLTIKEISTRCGYTNEYSFMRQFKEQVGKTPTEYRSSI 264 >UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SQN1_9FIRM Length = 294 Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 43/268 (16%) Query: 39 IRWHALTQ--------GAAKLEMPT-----GEIFTLRPGNVVLLPQNSAHRLSHVDNEST 85 + WH + G ++ T G+I + PG++ + Q+ + + + E+ Sbjct: 38 LHWHEFMEIIYIKKGKGNVTVDFTTHYVEEGDIIIILPGHIHGISQHEGYSMEY---ENI 94 Query: 86 CIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 R ++ SL FL + V+ + + L + S + VD LC Sbjct: 95 LFSVDMFRSKNH-----DSLDSEFFLPLLAGDVDIKSIYDKDDPLYPQLSSCLNRVDKLC 149 Query: 146 SQI----------C--ATFFTL----AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEM 189 S+ C F+ L VR+ + N +++ R ++ + E Sbjct: 150 SETPKGYHLALKGCYFEFFYVLFTNSTVRDEADRKNRSRDL------ERTKLILSYIDEN 203 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 A ++ +AS S + F + F++ G + ++ L RL +AA++ S V+ +A Sbjct: 204 YKEAISITDIASYCGFSESHFMRFFKNTMGVSFVSYLNDFRLNVAARLLSTNDDSVLSVA 263 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYRE 277 E+ G+ + S F++ F +++G TP YRE Sbjct: 264 ENCGFFNLSYFNRMFKKKYGVTPSRYRE 291 >UniRef50_A5FIC2 Sensor protein n=3 Tax=Bacteria RepID=A5FIC2_FLAJ1 Length = 1316 Score = 66.6 bits (161), Expect = 8e-10, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 51/81 (62%) Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGY 254 +VESLA I +MSR++ + +D+S +P ++ +RL+ AA++ E + IAE VGY Sbjct: 1231 SVESLAEIMNMSRSTLYRKIKDISNLSPNELINIVRLKRAAELLLNENYKMYEIAEMVGY 1290 Query: 255 ASESSFHKAFVREFGCTPGEY 275 S++SF + F + F TP EY Sbjct: 1291 KSQTSFGRNFQKHFTMTPSEY 1311 >UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIW0_CLOPH Length = 300 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 31/266 (11%) Query: 24 GSDWQ-LPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAH-RLSHVD 81 G+DW+ LPH + +T G+ + + EI ++ ++++L H +S+ Sbjct: 53 GTDWKSLPHSHN---FAEFFYITNGSGQFSVEK-EILDVKANDLIILNPTIVHTEISNPS 108 Query: 82 NESTCIVCGTLRLQHSAR---YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 IV G ++ A Y L +N S + L L E +S Sbjct: 109 KPMEYIVLGIEGIKFQAEDQGYIL-----------LNSSAHKSDLHLYFNSLAHEMKSEQ 157 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL----GAVIQQMLEMPGHAW 194 P + +C + FT+ +R ++ S++ P+L + + E Sbjct: 158 PYRNFVCQNLLNIIFTMILRNDAFKI-------SIVSGPKLTRECNIAKKYIEENYQENI 210 Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGY 254 T+E+L+S+ H+++ F F+ GT+P+ L K R++ + + + I++ VG+ Sbjct: 211 TIETLSSLVHLNKYYFVHNFKKQFGTSPINYLIKRRIEESMHLLVSTNHSLSSISQIVGF 270 Query: 255 ASESSFHKAFVREFGCTPGEYRERVR 280 +S S F +AF R TP EY++ + Sbjct: 271 SSPSYFSQAFKRMTNITPQEYKKMYK 296 >UniRef50_B6R0G1 Transcriptional regulator, AraC family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R0G1_9RHOB Length = 270 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 1/144 (0%) Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLE 188 + +E S G A+ +++C +R + +++ L HP L + + E Sbjct: 117 LMVEEVLSPRCGGAAVINRLCEVVVIRLLRHAVRSGAACSGLIAGLAHPNLAQALVAIHE 176 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 P W +E+LA +A MSR FA F+DV G TP + L+ RL + A++ P+ + Sbjct: 177 EPAKQWRLETLAEVAGMSRTQFAVHFKDVMGETPGSYLSNWRLAL-AKLDLEAGRPLKSV 235 Query: 249 AESVGYASESSFHKAFVREFGCTP 272 A VG+AS ++ +A+ R + P Sbjct: 236 AARVGFASPTALSRAYQRRYNELP 259 >UniRef50_C6AWA8 Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AWA8_RHILS Length = 348 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 2/152 (1%) Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLE 188 + +E A G + ++ F A+R W + + N + L+ L H +L + ++ Sbjct: 174 IGKEEAQASLGGSYVVGRLLDVLFIQAIRSWASSEGNMPEGWLAGLTHRQLAQTLHRIHA 233 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 H WT+E LA MSR++FA LF+ V G PL +T R+ A++ + Sbjct: 234 DLAHPWTLEQLARDVGMSRSTFAVLFKSVVGVPPLTYITTWRI-YRAKLILAAGHSISAA 292 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERVR 280 A GY ++ + +AF G PG++R R Sbjct: 293 AAQTGYGTDIALSRAFKAATGVAPGQWRRERR 324 >UniRef50_A7MMI8 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MMI8_ENTS8 Length = 314 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 1/152 (0%) Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLE 188 L ESR+ PG D + + + ++R ++ IL L H ++ + + + Sbjct: 148 LLLDESRNRRPGRDVVMTHLLQLLLVESLRS-DPELAKTAGILRGLQHEKIATALHLIHD 206 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 PG W + LA MSR++F F + G +P+ L R+ +A + + + I Sbjct: 207 KPGADWQIAHLARECAMSRSAFFATFSETVGMSPMQYLLFWRMSLARKALTSGQDNIEQI 266 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERVR 280 A GY S S+F AF + G PGE+R + R Sbjct: 267 ALRTGYQSASAFSVAFTKHAGMPPGEFRRQSR 298 >UniRef50_C9Z0D8 Arabinose operon regulatory protein n=2 Tax=Streptomyces RepID=C9Z0D8_STRSW Length = 307 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 56/107 (52%) Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 + PR+ + PG TV SLA +S + FA LF + G +P+ VL RL+ A Sbjct: 198 VDPRIRRAEDLIAADPGAPHTVRSLAESVALSPSRFAHLFTEQLGHSPMRVLHHARLRHA 257 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 A++ LPV +A + G+ S S F +AF +G PG+YR +R Sbjct: 258 ARLLEATELPVERVAGASGFGSPSHFSRAFRERYGVPPGQYRHGLRD 304 >UniRef50_Q47ES4 Transcriptional regulator, AraC family n=2 Tax=Betaproteobacteria RepID=Q47ES4_DECAR Length = 300 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 111/265 (41%), Gaps = 7/265 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS LL AP+ + N +L A + H L +G +L P T Sbjct: 27 LDRLSALLEGLAPR--VQVNLPPAGIARLNFAAEAPPFLHIHLLAEGEMRLH-PGSASLT 83 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES-TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVE 119 L+ +V+ ++AH L E+ ++C L L + + PV+ + Sbjct: 84 LQAPCIVVCRSDTAHALETPSAETFQRLMCARAWLDGPVAPLLLNEFAAPLVVPVDGA-- 141 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 + LR I + E + G AL + F +R IA T +L+ L PR+ Sbjct: 142 ESSLRHVINLISSELEAPRCGQPALLDRAGDILFIGLLRHLIAHPKTAGGLLNGLADPRI 201 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 + + P WT+E LA A MSR +FA FR+V TTP L+ +RL I AQ Sbjct: 202 ARALVVIHARPQDKWTLELLAEEAGMSRTAFANTFREVMRTTPGKYLSTIRLAI-AQRAV 260 Query: 240 RETLPVVVIAESVGYASESSFHKAF 264 + + A GY S S+ +A Sbjct: 261 QSGKGLKAAARDAGYNSTSALSRAL 285 >UniRef50_D1N3N0 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3N0_9BACT Length = 336 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 27/252 (10%) Query: 46 QGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSL 105 +G+A+ + TG + T+ GNV LLP S HR + + + L + R+ L +L Sbjct: 71 KGSARNDSGTGTLETVTVGNVFLLPPGSIHRYQAIHEFAHFNILFRPELLNQIRFDLETL 130 Query: 106 P--ETLFL---APVNHSV--EYNWLREA----IPFLQQESRSAM----PGVD-ALCSQIC 149 P + LF A N + + +L EA + L + R + PG A + Sbjct: 131 PGFQALFRNFGAAGNPTAISPFLFLPEAEITDVMMLLENCRRELERQEPGFQSAAVASFL 190 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 + + + E+N R+ V++Q+ ++V +A +A MS ++ Sbjct: 191 HALTGICRKARLQGGRGEENSF------RISRVVEQLNSRYSEEFSVPRMAKLAGMSVSN 244 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLP--VVVIAESVGYASESSFHKAFVRE 267 F F +V G +P+ LT+LRL++AA +F +P + IA VG+ + F + F + Sbjct: 245 FRHRFSEVMGVSPVEYLTRLRLKMAAPLF---MMPENITSIAFRVGFEDSNYFARQFRKY 301 Query: 268 FGCTPGEYRERV 279 G TP E+R R+ Sbjct: 302 AGLTPTEFRNRL 313 >UniRef50_Q2GAB8 Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GAB8_NOVAD Length = 299 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 61/104 (58%) Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 RL ++ +L P ++E++A++A ++ + F +LF+ G TP + K RL A QM Sbjct: 193 RLHKIMNAILADPAAEHSLEAMAAVAGVTPSHFCRLFKKAIGITPHQYVMKARLDRAQQM 252 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + + + ++E+ G+AS+S F +AF FG P ++R++ R+ Sbjct: 253 LVQTEMSLAALSEAAGFASQSHFSRAFRSWFGMAPSDFRQQERR 296 >UniRef50_A6FWZ8 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FWZ8_9DELT Length = 318 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 49/83 (59%) Query: 195 TVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGY 254 T++ LA +A +S+ F + F V G TP A L LRL AA+ LP++ +A SVG+ Sbjct: 232 TLDDLAQVAGLSKYHFLRQFSQVVGMTPGAYLRTLRLCHAARKLRTTDLPILEVALSVGF 291 Query: 255 ASESSFHKAFVREFGCTPGEYRE 277 A SF +AF R G TP EY++ Sbjct: 292 ADHPSFSRAFARHMGMTPSEYQK 314 >UniRef50_C0ZDD0 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDD0_BREBN Length = 298 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 50/80 (62%) Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 +A+ A +SR LFR+ TTPL +TKLR++ A + ++ L V IA ++GYA+ Sbjct: 206 DIANAAGLSRYYLINLFREYLNTTPLQYITKLRIEKAMDLLTQTNLSVNDIALAIGYANA 265 Query: 258 SSFHKAFVREFGCTPGEYRE 277 + F+K F + G +PG++RE Sbjct: 266 NYFNKVFKKLIGTSPGQFRE 285 >UniRef50_Q6FB96 Putative transcription regulator (AraC family) n=2 Tax=Acinetobacter sp. ADP1 RepID=Q6FB96_ACIAD Length = 299 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 50/77 (64%) Query: 196 VESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYA 255 V+ +A A+M+ A+F FR+++ TPL +LRLQ A ++ +++ + +AESVGY Sbjct: 213 VDEIAEQANMTSATFRNHFREITRMTPLQYQKQLRLQEARKLMLMQSIEIRRVAESVGYE 272 Query: 256 SESSFHKAFVREFGCTP 272 S+S F + +VR FG TP Sbjct: 273 SQSQFTREYVRLFGITP 289 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77379 Uncharacterized HTH-type transcriptional regulat... 370 e-101 UniRef50_A0NP67 Phosphoribosylaminoimidazole carboxylase, ATPase... 265 1e-69 UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C... 263 6e-69 UniRef50_A9DAF9 Transcriptional regulator, AraC family protein n... 256 5e-67 UniRef50_P45008 Uncharacterized HTH-type transcriptional regulat... 256 5e-67 UniRef50_C6AQ53 MtrA n=4 Tax=Pasteurellaceae RepID=C6AQ53_AGGAN 254 2e-66 UniRef50_C5BRT4 Helix-turn-helix-domain containing protein, AraC... 252 7e-66 UniRef50_A1TZC9 Transcriptional regulator, AraC family n=1 Tax=M... 252 1e-65 UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=C... 252 1e-65 UniRef50_A4F0L2 Transcriptional regulator, AraC family protein n... 250 3e-65 UniRef50_A6GC16 Phosphoribosylaminoimidazole carboxylase, ATPase... 250 4e-65 UniRef50_C5CL63 Transcriptional regulator, AraC family n=1 Tax=V... 250 6e-65 UniRef50_A7NLR2 Transcriptional regulator, AraC family n=2 Tax=C... 249 7e-65 UniRef50_B2TAQ8 Transcriptional regulator, AraC family n=6 Tax=P... 249 8e-65 UniRef50_B5ZZ22 Transcriptional regulator, AraC family n=5 Tax=R... 249 8e-65 UniRef50_B1KKM5 Transcriptional regulator, AraC family n=1 Tax=S... 249 8e-65 UniRef50_B2HZJ1 AraC-type DNA-binding domain-containing protein ... 248 2e-64 UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=C... 247 2e-64 UniRef50_B6A116 Transcriptional regulator, AraC family n=5 Tax=R... 246 6e-64 UniRef50_A8M1A6 Transcriptional regulator, AraC family n=1 Tax=S... 246 6e-64 UniRef50_Q2BP83 AraC-type DNA-binding domain-containing protein ... 246 6e-64 UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n... 246 8e-64 UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacter... 245 2e-63 UniRef50_A0L3B8 Transcriptional regulator, AraC family n=2 Tax=G... 244 2e-63 UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=R... 244 3e-63 UniRef50_A3Y9X7 Transcriptional regulator, araC family protein n... 243 3e-63 UniRef50_Q7MC25 AraC-type DNA-binding domain-containing protein ... 243 5e-63 UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=B... 243 5e-63 UniRef50_B3PSX8 Probable transcriptional regulator protein, AraC... 243 5e-63 UniRef50_Q21EK5 Histidine kinase n=2 Tax=Saccharophagus degradan... 243 5e-63 UniRef50_B5JV28 Transcriptional regulator n=1 Tax=gamma proteoba... 243 5e-63 UniRef50_D1V7I4 Transcriptional regulator, AraC family n=2 Tax=A... 243 7e-63 UniRef50_A9WHL1 Helix-turn-helix-domain containing protein AraC ... 242 9e-63 UniRef50_B6A5N0 Transcriptional regulator, AraC family n=1 Tax=R... 242 1e-62 UniRef50_O31249 Transcriptional regulator (XylS/AraC family) n=5... 242 1e-62 UniRef50_A6UH43 Helix-turn-helix-domain containing protein AraC ... 241 2e-62 UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein ... 240 4e-62 UniRef50_B2IIY8 Transcriptional regulator, AraC family n=3 Tax=B... 240 4e-62 UniRef50_Q09DL8 Transcriptional regulator, AraC family protein n... 238 2e-61 UniRef50_Q485B0 Transcriptional regulator, araC family n=1 Tax=C... 238 2e-61 UniRef50_B9XHR2 Transcriptional regulator, AraC family n=1 Tax=b... 237 3e-61 UniRef50_B5WHE2 Transcriptional regulator, AraC family n=1 Tax=B... 237 4e-61 UniRef50_A2SEH8 Transcriptional regulator, AraC family n=1 Tax=M... 236 8e-61 UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=C... 235 1e-60 UniRef50_C9R1V8 MtrA n=1 Tax=Aggregatibacter actinomycetemcomita... 235 1e-60 UniRef50_D1BRX4 Transcriptional regulator, AraC family n=1 Tax=X... 235 1e-60 UniRef50_A8LC22 Transcriptional regulator, AraC family n=3 Tax=A... 234 2e-60 UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=B... 234 3e-60 UniRef50_Q21H00 Transcriptional regulator, AraC family n=1 Tax=S... 233 3e-60 UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=c... 233 3e-60 UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC ... 233 3e-60 UniRef50_B1JWG2 Transcriptional regulator, AraC family n=13 Tax=... 233 4e-60 UniRef50_B2TGP8 Transcriptional regulator, AraC family n=13 Tax=... 233 4e-60 UniRef50_B9JLR2 Transcriptional regulator protein n=2 Tax=Rhizob... 233 6e-60 UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase... 233 6e-60 UniRef50_A7HFH7 Helix-turn-helix-domain containing protein AraC ... 233 6e-60 UniRef50_A7HS46 Helix-turn-helix-domain containing protein AraC ... 233 6e-60 UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=C... 232 1e-59 UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=R... 230 3e-59 UniRef50_C1RHR4 DNA-binding domain-containing protein, AraC-type... 230 3e-59 UniRef50_UPI0001B53B77 AraC family transcriptional regulator n=1... 230 4e-59 UniRef50_B1M711 Transcriptional regulator, AraC family n=4 Tax=R... 230 5e-59 UniRef50_Q01Y24 Transcriptional regulator, AraC family n=2 Tax=A... 230 6e-59 UniRef50_Q0K088 Transcriptional regulator (Transcriptional regul... 230 6e-59 UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingell... 229 8e-59 UniRef50_A4JQL6 Transcriptional regulator, AraC family n=6 Tax=B... 229 1e-58 UniRef50_Q07PU3 Transcriptional regulator, AraC family n=1 Tax=R... 228 1e-58 UniRef50_Q15UL8 Transcriptional regulator, AraC family n=1 Tax=P... 228 2e-58 UniRef50_UPI0001C310C0 transcriptional regulator, AraC family n=... 228 2e-58 UniRef50_D2PPT2 Transcriptional regulator, AraC family n=2 Tax=A... 228 2e-58 UniRef50_A7HC12 Helix-turn-helix-domain containing protein AraC ... 228 2e-58 UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Pr... 227 3e-58 UniRef50_B1G656 Transcriptional regulator, AraC family n=1 Tax=B... 227 3e-58 UniRef50_A9AD06 AraC family transcriptional regulator n=5 Tax=Bu... 227 5e-58 UniRef50_B7V4F0 Probable transcriptional regulator n=7 Tax=Pseud... 227 5e-58 UniRef50_Q88IN9 Transcriptional regulator, AraC family n=4 Tax=P... 226 6e-58 UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronoba... 226 6e-58 UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterob... 226 7e-58 UniRef50_A9F1M5 Putative araC-like transcription regulator n=1 T... 226 9e-58 UniRef50_C1ACW1 AraC family transcriptional regulator n=1 Tax=Ge... 225 1e-57 UniRef50_C1F8R2 Transcriptional regulator, AraC family n=1 Tax=A... 225 1e-57 UniRef50_C7Q710 Transcriptional regulator, AraC family n=1 Tax=C... 225 1e-57 UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Pr... 224 2e-57 UniRef50_A9M194 AraC-family transcriptional regulator n=29 Tax=N... 224 3e-57 UniRef50_P35319 Putative araC-like transcription regulator n=6 T... 223 3e-57 UniRef50_D2S4Y3 Transcriptional regulator, AraC family n=2 Tax=A... 223 4e-57 UniRef50_Q1MGU4 Putative AraC family transcriptional regulator n... 223 7e-57 UniRef50_C0DSD5 Putative uncharacterized protein n=1 Tax=Eikenel... 222 8e-57 UniRef50_A6VZ04 Helix-turn-helix-domain containing protein AraC ... 222 8e-57 UniRef50_C6AWA8 Transcriptional regulator, AraC family n=1 Tax=R... 222 9e-57 UniRef50_A6VY86 Helix-turn-helix-domain containing protein AraC ... 222 9e-57 UniRef50_C6WLA0 Transcriptional regulator, AraC family n=1 Tax=A... 222 1e-56 UniRef50_Q2KWV1 AraC-family transcriptional regulator n=1 Tax=Bo... 222 1e-56 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 222 1e-56 UniRef50_B9XR23 Transcriptional regulator, AraC family n=2 Tax=V... 221 2e-56 UniRef50_UPI0001AEBE6B AraC family transcriptional regulator n=1... 221 3e-56 UniRef50_C6B325 Transcriptional regulator, AraC family n=5 Tax=A... 221 3e-56 UniRef50_Q47YP7 Transcriptional regulator, araC family n=1 Tax=C... 220 4e-56 UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=A... 220 5e-56 UniRef50_B0U5T8 Transcriptional regulator AraC family n=12 Tax=P... 220 5e-56 UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=... 220 6e-56 UniRef50_Q488F1 Transcriptional regulator, AraC family n=2 Tax=G... 220 6e-56 UniRef50_B4VBF5 Transcriptional regulator n=4 Tax=Actinomycetale... 219 7e-56 UniRef50_B1MI41 Putative transcriptional regulator, AraC family ... 219 9e-56 UniRef50_C5V7T6 Transcriptional regulator, AraC family n=1 Tax=G... 218 1e-55 UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=P... 218 2e-55 UniRef50_Q21T04 Transcriptional regulator, AraC family n=1 Tax=R... 218 2e-55 UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=B... 218 2e-55 UniRef50_D2PNB5 Transcriptional regulator, AraC family n=1 Tax=K... 218 2e-55 UniRef50_A0KDP5 Transcriptional regulator, AraC family n=11 Tax=... 218 2e-55 UniRef50_A8ZMX0 Transcriptional regulator, AraC family n=1 Tax=A... 218 2e-55 UniRef50_C8SUE3 Transcriptional regulator, AraC family n=1 Tax=M... 217 3e-55 UniRef50_C6XBB1 Transcriptional regulator, AraC family n=1 Tax=M... 217 4e-55 UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=K... 217 5e-55 UniRef50_C5CZF0 Transcriptional regulator, AraC family n=1 Tax=V... 216 6e-55 UniRef50_C8PYQ8 Transcriptional regulator, AraC family n=1 Tax=E... 216 6e-55 UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=D... 216 7e-55 UniRef50_B8CRW0 Transcriptional regulator, AraC family n=1 Tax=S... 216 7e-55 UniRef50_A9GK43 Transcriptional regulator, AraC family n=1 Tax=S... 216 8e-55 UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=A... 216 9e-55 UniRef50_D2BAU8 AraC family transcriptional regulator n=1 Tax=St... 216 9e-55 UniRef50_A8L3A5 Transcriptional regulator, AraC family n=1 Tax=F... 215 9e-55 UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-typ... 215 1e-54 UniRef50_A4Z2A2 Putative transcriptional regulator, AraC/XylS fa... 215 1e-54 UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=P... 215 1e-54 UniRef50_B8ESK8 Transcriptional regulator, AraC family n=8 Tax=P... 215 2e-54 UniRef50_C0XNW0 AraC family transcriptional regulator n=1 Tax=Co... 214 3e-54 UniRef50_B1KNX2 Transcriptional regulator, AraC family n=1 Tax=S... 212 1e-53 UniRef50_C8QBD0 Transcriptional regulator, AraC family n=1 Tax=P... 211 2e-53 UniRef50_Q7UL84 Probable araC family transcription regulator n=1... 211 3e-53 UniRef50_A4XUD0 Transcriptional regulator, AraC family n=1 Tax=P... 211 3e-53 UniRef50_B1K331 Transcriptional regulator, AraC family n=12 Tax=... 210 3e-53 UniRef50_Q392E1 Transcriptional regulator, AraC family n=32 Tax=... 210 4e-53 UniRef50_A7JV94 Possible AraC family transcriptional regulator n... 210 4e-53 UniRef50_C7PXM7 Transcriptional regulator, AraC family n=1 Tax=C... 210 4e-53 UniRef50_Q0AK28 Transcriptional regulator, AraC family n=1 Tax=M... 210 5e-53 UniRef50_A7JVV0 Possible AraC family transcriptional regulator n... 210 6e-53 UniRef50_B5GM94 Helix-turn-helix domain-containing protein n=1 T... 209 9e-53 UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type... 207 3e-52 UniRef50_A9CGU4 Transcriptional regulator, AraC family n=2 Tax=A... 207 3e-52 UniRef50_A0KNU2 Transcriptional regulator, AraC family n=1 Tax=A... 207 3e-52 UniRef50_D0XYL8 Transcriptional regulator, AraC family n=1 Tax=C... 207 4e-52 UniRef50_A0Z8C5 Transcriptional regulator, araC family protein n... 207 5e-52 UniRef50_C7Q7L5 Transcriptional regulator, AraC family n=1 Tax=C... 206 6e-52 UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=K... 206 6e-52 UniRef50_B0SFV6 Transcriptional regulator, AraC-related n=2 Tax=... 206 8e-52 UniRef50_C5CWM4 Transcriptional regulator, AraC family n=1 Tax=V... 205 2e-51 UniRef50_C8NCJ5 AraC family transcriptional regulator n=1 Tax=Ca... 203 6e-51 UniRef50_B2T994 Transcriptional regulator, AraC family n=1 Tax=B... 203 6e-51 UniRef50_A4W931 Transcriptional regulator, AraC family n=2 Tax=E... 203 7e-51 UniRef50_Q39N64 Transcriptional regulator, AraC family n=11 Tax=... 202 1e-50 UniRef50_B7VTG6 Transcriptional Regulator, AraC family n=7 Tax=V... 202 1e-50 UniRef50_A0NP18 AraC-type DNA-binding domain-containing protein ... 202 2e-50 UniRef50_A6T1U9 Transcriptional regulator, AraC family n=2 Tax=P... 201 3e-50 UniRef50_A6G0H9 Transcriptional regulator, AraC family protein n... 201 3e-50 UniRef50_Q2SGY3 AraC-type DNA-binding domain-containing protein ... 200 3e-50 UniRef50_A8LA37 Transcriptional regulator, AraC family n=1 Tax=F... 200 3e-50 UniRef50_B5ZFX2 Transcriptional regulator, AraC family n=1 Tax=G... 200 5e-50 UniRef50_B0RCB3 Putative AraC-family transcriptional regulator n... 200 7e-50 UniRef50_C9XTT1 Putative uncharacterized protein n=1 Tax=Cronoba... 199 9e-50 UniRef50_C6W947 Transcriptional regulator, AraC family n=1 Tax=A... 199 9e-50 UniRef50_A9C0Z2 Transcriptional regulator, AraC family n=1 Tax=D... 198 2e-49 UniRef50_D1XPD5 Transcriptional regulator, AraC family n=1 Tax=S... 197 3e-49 UniRef50_Q3BT36 Transcriptional regulator, AraC family n=3 Tax=G... 197 3e-49 UniRef50_Q5YVF5 Putative transcriptional regulator n=1 Tax=Nocar... 197 4e-49 UniRef50_A7MMI8 Putative uncharacterized protein n=1 Tax=Cronoba... 197 4e-49 UniRef50_A1SPZ5 Transcriptional regulator, AraC family n=1 Tax=N... 197 4e-49 UniRef50_D0C8I5 Transcriptional regulator n=2 Tax=Acinetobacter ... 196 5e-49 UniRef50_Q0HZJ9 Transcriptional regulator, AraC family n=13 Tax=... 196 5e-49 UniRef50_A6VS98 Helix-turn-helix-domain containing protein AraC ... 196 8e-49 UniRef50_Q0KAF9 Transcriptional regulator, AraC-family n=9 Tax=B... 196 8e-49 UniRef50_Q15XK9 Transcriptional regulator, AraC family n=1 Tax=P... 195 1e-48 UniRef50_A1T3N4 Transcriptional regulator, AraC family n=1 Tax=M... 195 1e-48 UniRef50_A9C071 Transcriptional regulator, AraC family n=3 Tax=C... 195 1e-48 UniRef50_D0LQY3 Transcriptional regulator, AraC family n=1 Tax=H... 193 4e-48 UniRef50_D2PPT5 Transcriptional regulator, AraC family n=1 Tax=K... 193 5e-48 UniRef50_Q39MN2 Transcriptional regulator, AraC family n=1 Tax=B... 193 7e-48 UniRef50_C4DJ08 DNA-binding domain-containing protein, AraC-type... 192 1e-47 UniRef50_C9PQP0 AraC family transcriptional regulator n=1 Tax=Pa... 192 1e-47 UniRef50_A6WBY5 Helix-turn-helix-domain containing protein AraC ... 191 2e-47 UniRef50_A9CLF9 Transcriptional regulator, AraC family n=5 Tax=R... 191 2e-47 UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=... 190 4e-47 UniRef50_C3JUH7 Transcriptional regulator, AraC family n=3 Tax=N... 189 8e-47 UniRef50_A3YG00 Transcriptional regulator n=2 Tax=Proteobacteria... 189 8e-47 UniRef50_C9YV93 Putative transcriptional regulator n=2 Tax=Strep... 189 1e-46 UniRef50_D2Q0X6 Transcriptional regulator, AraC family n=1 Tax=K... 189 1e-46 UniRef50_C1YVX3 DNA-binding domain-containing protein, AraC-type... 188 2e-46 UniRef50_D1BJS6 DNA-binding domain-containing protein, AraC-type... 188 2e-46 UniRef50_A9GPX5 Probable transcriptional regulator n=1 Tax=Soran... 188 2e-46 UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=B... 186 9e-46 UniRef50_Q0K0F9 Transcriptional regulator, AraC-family n=1 Tax=R... 186 9e-46 UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=... 185 1e-45 UniRef50_A5V6I7 Transcriptional regulator, AraC family n=1 Tax=S... 185 1e-45 UniRef50_A1UBR1 Transcriptional regulator, AraC family n=5 Tax=M... 185 2e-45 UniRef50_B1M4B9 Transcriptional regulator, AraC family n=1 Tax=M... 184 3e-45 UniRef50_C7PWW7 Transcriptional regulator, AraC family n=13 Tax=... 184 4e-45 UniRef50_Q3BY04 Transcriptional regulator, AraC family n=2 Tax=X... 182 1e-44 UniRef50_A6SWK7 Transcriptional regulator, AraC family n=3 Tax=B... 181 2e-44 UniRef50_B9QZW4 Transcriptional regulator, AraC family protein n... 181 2e-44 UniRef50_A8GL35 Transcriptional regulator, AraC family n=2 Tax=S... 179 1e-43 UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regul... 178 1e-43 UniRef50_B5Y1B2 Transcriptional regulator, AraC family n=1 Tax=K... 178 3e-43 UniRef50_A3Y511 Transcriptional regulator AraC family protein n=... 178 3e-43 UniRef50_A3ZY19 Probable transcriptional regulator n=1 Tax=Blast... 177 3e-43 UniRef50_Q47ES4 Transcriptional regulator, AraC family n=2 Tax=B... 177 4e-43 UniRef50_Q13NB1 Transcriptional regulator, AraC family n=6 Tax=B... 175 1e-42 UniRef50_Q0S0T6 Transcriptional regulator n=1 Tax=Rhodococcus jo... 175 1e-42 UniRef50_B6R0G1 Transcriptional regulator, AraC family n=1 Tax=P... 175 1e-42 UniRef50_A6T2N0 Transcriptional regulator, AraC family n=9 Tax=P... 174 3e-42 UniRef50_C6WK58 Transcriptional regulator, AraC family n=3 Tax=A... 174 3e-42 UniRef50_B5GNS1 AraC-family transcriptional regulator n=2 Tax=St... 174 3e-42 UniRef50_B6YYF5 Transcriptional regulator, AraC family n=1 Tax=P... 172 2e-41 UniRef50_B4E7R7 AraC family regulatory protein n=8 Tax=Burkholde... 171 3e-41 UniRef50_C7Q0G5 Transcriptional regulator, AraC family n=1 Tax=C... 170 4e-41 UniRef50_D0L3G6 Helix-turn-helix-domain containing protein AraC ... 168 1e-40 UniRef50_C1YFP1 DNA-binding domain-containing protein, AraC-type... 167 4e-40 UniRef50_A9FWP2 Transcriptional regulator, AraC family n=1 Tax=S... 166 6e-40 UniRef50_A9CLM3 Transcriptional regulator, AraC family n=2 Tax=A... 166 7e-40 UniRef50_C5D1X9 Transcriptional regulator, AraC family n=1 Tax=V... 166 8e-40 UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteri... 165 2e-39 UniRef50_A5V7K5 Transcriptional regulator, AraC family n=1 Tax=S... 165 2e-39 UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=C... 163 9e-39 UniRef50_Q1GEZ9 Transcriptional regulator, AraC family n=10 Tax=... 161 2e-38 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 161 2e-38 UniRef50_A8TQH1 Transcriptional regulator, AraC family protein n... 161 3e-38 UniRef50_UPI000178921D transcriptional regulator, AraC family n=... 161 3e-38 UniRef50_UPI0001788F57 transcriptional regulator, AraC family n=... 160 6e-38 UniRef50_A9KRM0 Transcriptional regulator, AraC family n=3 Tax=F... 159 1e-37 UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Rum... 159 1e-37 UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=P... 157 4e-37 UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=C... 156 7e-37 UniRef50_B4B1U3 Transcriptional regulator, AraC family n=1 Tax=C... 156 1e-36 UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=M... 155 1e-36 UniRef50_B0AA61 Putative uncharacterized protein n=1 Tax=Clostri... 155 2e-36 UniRef50_A6E386 Transcriptional regulator, AraC family protein n... 155 2e-36 UniRef50_C0ABA0 L-rhamnose operon transcriptional activator n=1 ... 154 4e-36 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 153 8e-36 UniRef50_B2TM72 AraC-family transcriptional regulator n=3 Tax=Cl... 152 1e-35 UniRef50_C9L8Z4 Transcriptional regulator, AraC family n=2 Tax=C... 152 1e-35 Sequences not found previously or not previously below threshold: UniRef50_Q2SZ66 Transcriptional regulator, AraC family n=31 Tax=... 184 2e-45 UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=P... 162 1e-38 UniRef50_UPI00019094D0 probable transcriptional regulator protei... 154 3e-36 UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonel... 154 3e-36 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 154 3e-36 UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecali... 154 4e-36 UniRef50_B9TKC7 Putative uncharacterized protein (Fragment) n=1 ... 154 4e-36 UniRef50_B4WW69 Transcriptional regulator, AraC family protein n... 154 4e-36 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 153 5e-36 UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostri... 153 6e-36 UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=... 152 1e-35 >UniRef50_P77379 Uncharacterized HTH-type transcriptional regulator ykgD n=85 Tax=Enterobacteriaceae RepID=YKGD_ECOLI Length = 284 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT Sbjct: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY Sbjct: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG Sbjct: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR Sbjct: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP Sbjct: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 >UniRef50_A0NP67 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NP67_9RHOB Length = 315 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 31/307 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 DAL+++L +G++ + W + +V R+H +G L + + Sbjct: 4 DALTQILDALKLRGSVYFHTCFSPPWAVR-VPAFGNVARFHMAMRGGCWLAVDGLDKPIR 62 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE-----------------------------STCIVCGT 91 L G++ ++P +AH LS + + + CG Sbjct: 63 LATGDLAVIPHGAAHILSDEPDRPAADVDEVVRQSGYAGEGALYYGGPDEDMACKLFCGH 122 Query: 92 LRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 + + + L + P ++ WL + F+ E R+ PG +A+ ++ Sbjct: 123 FEFEEGSVHPLLDALPAVIHLPNTQTMNAFWLEAVMRFVASEVRAGQPGSEAIIHRLTEI 182 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 F VR ++ + L+ +L+P+LG + ++ P WTVESLA A MSR FA Sbjct: 183 IFIQVVRTFVDREGDRAGCLAAVLNPKLGRSMSKIHLAPEKPWTVESLAREAGMSRTVFA 242 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 F ++ G TPLA +T R++ A + LP++ IAE++GY+SE++F++AF R+F T Sbjct: 243 DRFTNLVGMTPLAYVTHWRMERARRDIRETDLPLIDIAENIGYSSEAAFNRAFKRQFNQT 302 Query: 272 PGEYRER 278 PG+ R + Sbjct: 303 PGQVRRQ 309 >UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C6AKL4_AGGAN Length = 293 Score = 263 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 31/299 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L+ L+ +G I+ C DW + H + R+H ++QG ++ + + + Sbjct: 1 MDYLDQLIRLSGIEGEINILCRFWGDWLVHHKQEPNLIGRFHIVSQGTCQIRLKD-QTYH 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNEST-----------------------CIVCGTLRLQHS 97 L+PG+VV LP H + H + T + CG R + Sbjct: 60 LKPGDVVFLPYGEEHIIYHGADTETQITKTTQGVFTLHRNSSNESGDFEMFCGYFRYLNV 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 A+ L +LP LA N S + + L++E+ G + + +C FT + Sbjct: 120 AQSLLFNLP-HWHLAGNNDS-----IMALLKLLRKETE-DNLGNEVVVDALCNILFTYLI 172 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R+++ + IL L RL + ++ P +W++E LA MSRA+F + F+ Sbjct: 173 RDYLQHHQVNQGILGALQDKRLKNAVNAIIANPKESWSMEVLAESCAMSRANFIRAFKQK 232 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G P LT +R+ +A + P+ VIA VGY S++ F K F +G +PG+YR Sbjct: 233 TGILPGKFLTIMRMNMAGMLLKNTQKPISVIASEVGYQSDTHFTKVFKSYYGISPGKYR 291 >UniRef50_A9DAF9 Transcriptional regulator, AraC family protein n=3 Tax=cellular organisms RepID=A9DAF9_9RHIZ Length = 334 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 85/305 (27%), Positives = 139/305 (45%), Gaps = 31/305 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ L + G + L + W + + V+ + +T GA LE+ E L Sbjct: 13 DPLAETLHMLRLTGALYCRGELTAPWAVAIPKLD-GVMTFMVVTSGACWLELEGHEPRFL 71 Query: 62 RPGNVVLLPQNSAHRLSHV---------------------------DNESTCIVCGTLRL 94 R G++ L+P ++ H LS E T + G +R Sbjct: 72 RQGSLALIPHSTPHVLSSAKGLAGAPLFDLPVEKVSERYEVLRHGGGGELTRSMYGVVRF 131 Query: 95 QH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 +A + L LPE + + + WL+ + F+ E+ + PG + + +++ Sbjct: 132 DDVAAEHLLKLLPEIIMIDSWDDQT-GGWLQSTLRFIANEAITLKPGGETVITRLSDVVV 190 Query: 154 TLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 A+R W+ + + L L P++G + M PGH W+VE+LAS A MSR++FA Sbjct: 191 IQAIRSWLETSPSADTGWLKALRDPQVGKTLALMHREPGHDWSVETLASRAGMSRSAFAA 250 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F ++ G TPL LTK R+++A + + VI+ +GY SE+SF +AF R FG P Sbjct: 251 RFSELVGETPLKYLTKWRMRVARNRLIDTSDALAVISNDLGYQSEASFCRAFKRVFGQPP 310 Query: 273 GEYRE 277 G R Sbjct: 311 GSIRR 315 >UniRef50_P45008 Uncharacterized HTH-type transcriptional regulator HI1052 n=17 Tax=Haemophilus influenzae RepID=Y1052_HAEIN Length = 298 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 31/303 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L L +G I+ C +WQ+ H + +H + QG L + + F Sbjct: 1 MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTLNEKQ-FH 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCI------------------------VCGTLRLQH 96 L+ G+V LPQN H + + N+ I CG Q Sbjct: 60 LKEGDVFFLPQNQPHSMHYSANKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQ 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 A S+PE L + + + + QE++ G ++ + Sbjct: 120 DA-LLTASMPEYLHINLCD-----TPIHPLVQLFLQEAQKNDAGTKSVVDALSNVLLIYI 173 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R I Q E+ IL L RL + +L+ P + W +E LA +A MSRA+F ++F+ Sbjct: 174 LRHAIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRIFQQ 233 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G +P LTK+RLQ AA + + V+ IA VGY SE+ F K F + +P +YR Sbjct: 234 HIGMSPGRFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYR 293 Query: 277 ERV 279 + V Sbjct: 294 KSV 296 >UniRef50_C6AQ53 MtrA n=4 Tax=Pasteurellaceae RepID=C6AQ53_AGGAN Length = 302 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 139/308 (45%), Gaps = 35/308 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVI-RWHALTQGAAKLEMPTGEIF 59 MD L +L+ L G ++ C+ WQ+ E + +H + QG L + Sbjct: 1 MDCLDKLIQLAQVSGEVNIRCLFQGQWQIQPNITENQYVGAFHLIEQGECWLTL-GERQI 59 Query: 60 TLRPGNVVLLPQNSAHRLS-------------HVDNESTC--------------IVCGTL 92 L+ G++ LPQN H ++ DN ST + CG Sbjct: 60 HLQAGDIFFLPQNRPHLIAGQAQNLSENNVPQQQDNASTLFKVYSIGQNSADLKMFCGLF 119 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + + +LPE L L S+ ++ + +QQE+ + G +L + Sbjct: 120 YYSKPS-LLIDALPEYLHL-----SLNGTPVQSVVQLMQQEADNHQQGAKSLIDALVTVL 173 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 F +R + + +L+ RLG V+QQ+ P AW +++LA +A MSRA+F + Sbjct: 174 FIYILRHGLQENLLHCGLLAAFQDKRLGKVLQQLFNAPQQAWNMDALAELAAMSRANFMR 233 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 +F+ G P LT+LRLQ AA + ++ V+ +A VGY SE+ F KAF +G +P Sbjct: 234 VFQQKIGMAPGKFLTQLRLQEAALLLNKTQKSVLAVALDVGYQSEAHFSKAFKALYGVSP 293 Query: 273 GEYRERVR 280 +YR+ + Sbjct: 294 SQYRKAEQ 301 >UniRef50_C5BRT4 Helix-turn-helix-domain containing protein, AraC type n=2 Tax=Gammaproteobacteria RepID=C5BRT4_TERTT Length = 320 Score = 252 bits (645), Expect = 7e-66, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 130/307 (42%), Gaps = 31/307 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L +L G++ L + W + + +H +TQG L + GE L Sbjct: 12 DPLGEILYQLRMDGSLYAQSYLSAPWGVEMPELP-GKMMFHIITQGQCWLHVEGGEPVLL 70 Query: 62 RPGNVVLLPQNSAHRLSHVDNE---------------------------STCIVCGTLRL 94 R G++VL+P HR+ ST + C + Sbjct: 71 RQGSLVLVPHGRGHRVMDAPGSPVAKLFDLPIRRITDRYEELHYGGGGASTHLTCCVMSF 130 Query: 95 QH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + R + LP+ L + + V+ +WL+ + F+ +E+R PG + + + Sbjct: 131 DPLTGRQLIPHLPDYLHIDSWDTDVD-SWLQTTLRFIAREAREQKPGGQTIIANLADILV 189 Query: 154 TLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 A+R W+ A T L+ L +G+ + + P WTV++LA +SR+ F+ Sbjct: 190 IQAIRAWLDATEETSAGWLAALRDKYIGSALAAIHREPERNWTVDTLAREVGLSRSGFSA 249 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F ++ G + +T R+Q+A + + +A+ +GY SE++F +AF R G +P Sbjct: 250 RFSELVGESAKRYITHWRMQLARSKLLDSGISMGELADQLGYHSEAAFCRAFKRVIGVSP 309 Query: 273 GEYRERV 279 G ++ Sbjct: 310 GSIKKSA 316 >UniRef50_A1TZC9 Transcriptional regulator, AraC family n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TZC9_MARAV Length = 327 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 77/310 (24%), Positives = 129/310 (41%), Gaps = 39/310 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L L GT+ L S W + + +H +TQG+ L + L Sbjct: 14 DPLGETLCSLRMDGTVYATAELISPWGMEMPPLG-GKMMFHIVTQGSCWLRFKDQDSLLL 72 Query: 62 RPGNVVLLPQNSAHRLSHVDN-----------------------------------ESTC 86 + G++ L+P+ H +SH +N E T Sbjct: 73 KTGDLALVPKGEGHCISHSNNQPCEPFFDIPVTRLTDRFEFMRYGGAGTEEQRTGEEETR 132 Query: 87 IVCGTLRLQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 + CG L +A+ + LP+ + + + ++ L I ++QE+R+ PG + Sbjct: 133 LTCGVLGFDQIAAQKLIRELPQCIHIKGDDGALPAE-LTTLIQLMEQEARALSPGGVTVM 191 Query: 146 SQICATFFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + + A+R WI + K L L P+LG + + P WTV LA A Sbjct: 192 AHLADIIVIQAIRHWINSSAEASKGWLGALKDPKLGKALAAIHAHPEADWTVSRLARHAG 251 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSR+ F+ F +V GT+ LT+ R+ +A + + + +AE +GY SE++F +A+ Sbjct: 252 MSRSGFSARFTEVIGTSVKQYLTEWRMNLARLRIGQSPVTLTELAEELGYQSEAAFSRAY 311 Query: 265 VREFGCTPGE 274 R FG P Sbjct: 312 KRVFGVPPLR 321 >UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=Cupriavidus RepID=Q46N37_RALEJ Length = 322 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 34/316 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS L+ L +P GT+D +C + W + + +H + G A + + ++ Sbjct: 1 MDSLSELVRLLSPSGTVDLHCRVAGAWSAHNAQAPAGHMPYHVILDGRADVTI-GKDVLP 59 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 + G+V+L P+ +AH L+ + I+CGT Sbjct: 60 VSAGDVLLFPRGAAHTLASAQRTRRSGPPRGTASQRFNGVVTEITVPGADAPLDILCGTF 119 Query: 93 RLQHSARYFLTSLPETLFLA-----PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 L A L +LPE L + P + WLR I + E+ + PG A+ + Sbjct: 120 ALGGGAGILLRALPEMLCVPTAGPSPGEGGHDAGWLRGLIGMMHAEAETPRPGGAAIIAD 179 Query: 148 ICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 + FT+ +R I++ + +L+LL R+ + ++ P WT+ESLA A++SR Sbjct: 180 LSTALFTVLLRTLISRGTVTRGVLALLADTRMAKAVDAVVGSPERPWTIESLAQSANVSR 239 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 A+ A+ F + G TPL ++T LR++ AA++ ++ L +AE GYAS+++F +AF + Sbjct: 240 ATLARRFTQLGGITPLELVTTLRMERAARLLQQDNLSAAAVAERCGYASQAAFGRAFSGQ 299 Query: 268 FGCTPGEYRERVRQLA 283 FG PG YR + R L Sbjct: 300 FGVGPGAYRRQQRALR 315 >UniRef50_A4F0L2 Transcriptional regulator, AraC family protein n=7 Tax=Rhodobacterales RepID=A4F0L2_9RHOB Length = 330 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 131/315 (41%), Gaps = 39/315 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIF 59 +D LS +L + QGT+ W + H +V R+H +G + +P +G+ Sbjct: 14 LDLLSDILTRLSLQGTLYFRTSFTPPWGV-HVPSYQNVARFHFAHRGECLVHLPQSGDTI 72 Query: 60 TLRPGNVVLLPQNSAHRL-------------------------------SHVDNESTCIV 88 L G++VL+P + H L D+ T ++ Sbjct: 73 RLAQGDLVLIPHGAEHMLFCSTTGKEAVLSLDRVIEASGYTGEGVLVYGGDEDDRDTQLI 132 Query: 89 CGTLRLQ-----HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 CG + L LP L + + WL + + E+ G D Sbjct: 133 CGHISYGVQGRAGGGHMLLDRLPPYLHIQDYGEAR-GAWLEATLRVIGAEAGKDRLGGDL 191 Query: 144 LCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 + ++ F A+R + ++ + + L+ P+L + + P +WTVE LA IA Sbjct: 192 IALKMSEALFAQAIRVHLESLSPDDSSLAGFADPQLSRALSAFHKAPAQSWTVEQLARIA 251 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MSR FAQ F G TP+ LT R+QIA Q + L V AE GYASE++F + Sbjct: 252 GMSRTGFAQSFSAKMGLTPMQYLTTWRMQIACQGLVEQGLNVADAAEMAGYASEAAFSRV 311 Query: 264 FVREFGCTPGEYRER 278 F ++ G +P YR + Sbjct: 312 FRKQIGVSPAAYRMQ 326 >UniRef50_A6GC16 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC16_9DELT Length = 316 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 30/310 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + GT+ LGS + L E R+H +G LE+ GE Sbjct: 1 MDLLSDILRVIPLHGTLYFRAELGSPFGLAVPRNE-GAARFHIALEGECTLELGEGEGVR 59 Query: 61 LRPGNVVLLPQNSAHRLSHVD---------------------------NESTCIVCGTLR 93 LR G + L+P + H L T +VCG Sbjct: 60 LRRGELALVPHGARHHLVDAPARSVVELEAALAASGWTGAGPFRYGGPGARTTLVCGHFA 119 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + L + + ++ WL + + ++ +E+ G +A+ S++ F Sbjct: 120 FPPGVLHPLLDALPRVLHFGADAGHDFRWLDDVMRYIGEEAGGDRAGREAVLSRLAEILF 179 Query: 154 TLAVREWIA--QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R ++ + ++ +N+L+ + P+LG + + E P W++++LA A MSR FA Sbjct: 180 IHMLRAYVESCEEDSAENVLAAIADPQLGRALTLIHERPAQKWSLQALAQGAGMSRTLFA 239 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F TP+ LT+ R+++A + V +A+SVGY SE++F +AF R G Sbjct: 240 ERFAACVQLTPMQYLTRWRIELAKAQLRQSERSVAEVADSVGYLSEAAFGRAFKRLVGVG 299 Query: 272 PGEYRERVRQ 281 PG YR ++ Sbjct: 300 PGGYRASWQR 309 >UniRef50_C5CL63 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CL63_VARPS Length = 318 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 37/315 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDW--QLPHGAGELSVIR--------WHALTQGAAK 50 MD LS +L +G + N + + W ++P GA ++R H + QG Sbjct: 1 MDVLSDVLRTIRLEGALFLNGDMHAPWCFKVPKGAHMAQLLRPGAQRLAICHLVLQGECW 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLSHV--------------------------DNES 84 ++ GE G+V+ +P +H + + + Sbjct: 61 AQVDGGEPIRAHAGDVIAVPHGDSHVVGSGLLQAAVDVAHVVNPRAPELERIRYGGNGDR 120 Query: 85 TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 T +VC + A L + LF + W+ +++ F+ ++ S PG + + Sbjct: 121 TVLVCSWFAYEGDAPNPLMANIPRLFTTSLRSRPAGPWIEQSVNFVLGDAASHTPGSEMV 180 Query: 145 CSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +++ F +R +I + L+ L P + + M P WTV++LA Sbjct: 181 AAKVAEVLFAEVLRGYIESMPANNPGWLAGLRDPHVSRCLALMHGDPARNWTVDALAQEI 240 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 H+SR+ A F ++ G P+ LT+ R+ +AA M ++ + IAE VGY SE++F++A Sbjct: 241 HVSRSVLADRFAELVGAPPMHYLTRWRMILAAGMLRKDQGNLARIAEDVGYESEAAFNRA 300 Query: 264 FVREFGCTPGEYRER 278 F RE+G +PG +R+ Sbjct: 301 FKREYGVSPGVWRQN 315 >UniRef50_A7NLR2 Transcriptional regulator, AraC family n=2 Tax=Chloroflexaceae RepID=A7NLR2_ROSCS Length = 342 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 127/306 (41%), Gaps = 33/306 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IF 59 MD+LS +L + ++ LGS W L +V +HAL +G L + + Sbjct: 20 MDSLSHVLNTVRLRSSVYCRSELGSPWGLHFAPRSCAV--FHALHRGNGYLCVEGDAGLL 77 Query: 60 TLRPGNVVLLPQNSAHRLSH-----------------------VDNESTCIVCGTLRLQH 96 LR G+VVLLP H + D + I+CGT +H Sbjct: 78 PLREGDVVLLPGGEEHSILETPDAPLFRNLELDQWGECALMRWSDAPTAVILCGTFDFEH 137 Query: 97 SARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 Y L LP + + +S L + + E+ + P + ++ F Sbjct: 138 IGTYALLKHLPRVVHIPRSENSA----LNSILALMASEAEAGRPAKEVALRRLADILFIQ 193 Query: 156 AVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 ++ W+ E+ L P +G ++ + P H+WTV +LA SR+ FA F Sbjct: 194 IIQRWVEIEGIERCGWFGALHDPLIGRALELIHAQPQHSWTVAALARAVACSRSFFAARF 253 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFS-RETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 + G P+ L + RLQ+A + + IA +GY SE++F KAF R G PG Sbjct: 254 TALVGEPPMEYLRRWRLQLATHLLMDHAHVSAGDIAARIGYHSEAAFSKAFKRSLGIAPG 313 Query: 274 EYRERV 279 YR+R Sbjct: 314 AYRKRH 319 >UniRef50_B2TAQ8 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TAQ8_BURPP Length = 349 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 43/325 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL----------PHGAGELSVIRWHALTQGAAK 50 MDALS +L L G + N + W L ++ +H +T+G Sbjct: 1 MDALSDVLRLVRLGGAVYLNGDFTAPWCLYGQADAGLCGSFLPPAERIVSYHLITEGGCW 60 Query: 51 --LEMPTGEIFTLRPGNVVLLPQNSAHRLSH----------------------------- 79 L + G ++++PQ AH L Sbjct: 61 ASLADDPESAIYVAAGELLVVPQGEAHLLGSSLDVTPGPTGELLESQLRNAPGQVMALCY 120 Query: 80 -VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 + T +VCG L + + S +F + + + WL ++ F E+ Sbjct: 121 GGGGDRTRLVCGFLACDDTLSNPVLSALPRIFKVDMRNDPQSAWLESSLRFAAAEAAEWR 180 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G + +++ F AVR I + +++ L+ + +G + M P H WTV+ Sbjct: 181 VGSAIVLARLSELLFVEAVRRCIDALPSDRKGWLAGVGDRFVGRALALMHAQPAHGWTVD 240 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA A +SR++ AQ F + G P+ L RLQIAAQ T + +A+ VGY SE Sbjct: 241 ELARKAGLSRSALAQRFTQLLGQPPMQYLAHWRLQIAAQELRGGTKSLAAVADQVGYESE 300 Query: 258 SSFHKAFVREFGCTPGEYRERVRQL 282 ++F++AF REFG P +R ++ Sbjct: 301 AAFNRAFKREFGMPPAGWRRSRGEM 325 >UniRef50_B5ZZ22 Transcriptional regulator, AraC family n=5 Tax=Rhizobiales RepID=B5ZZ22_RHILW Length = 329 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 129/305 (42%), Gaps = 31/305 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS +L G C L W + +L +R+H ++QG + Sbjct: 16 MDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQL--LRFHFVSQGPCWIHTEVEGWQE 73 Query: 61 LRPGNVVLLPQNSAHRLSHVD---------------------------NESTCIVCGTLR 93 L G++VLLPQ AHRL+ ++ + CG++ Sbjct: 74 LNDGDLVLLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREGMGANSTLFCGSMA 133 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 L A + L +L + + + + + + + E+ G + S++ Sbjct: 134 LGAHALHPLIALMPPI-IKGCDVAGNDPIVGPLLAAMSAEATQPQMGSATVLSRMADLLA 192 Query: 154 TLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W+ + L+ + P +G V+ M PGH WT+ESLA +A SR+ FA+ Sbjct: 193 ARLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLAGVAGQSRSIFAE 252 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G L +LR+Q+A + + + + +A +GY SE+SF +AF R +P Sbjct: 253 RFSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASFARAFKRVTNVSP 312 Query: 273 GEYRE 277 G R Sbjct: 313 GIVRR 317 >UniRef50_B1KKM5 Transcriptional regulator, AraC family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKM5_SHEWM Length = 330 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 118/300 (39%), Gaps = 29/300 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 +D LS +L + + S W + E +H + +G+A L Sbjct: 24 LDVLSDVLRMIRLYASSYYCAEFSSPWGIDEPQAECGT--FHVVIRGSAWLMTEELTSPV 81 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNES------------------------TCIVCGTLRLQ 95 L G+++ P S H++S ++CG + Q Sbjct: 82 FLSTGDIIAFPTGSPHQISEQPGSQLMSGGEVLEKIRSNSSPFSDGQSVVTLLCGYFQYQ 141 Query: 96 HSAR-YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 L +P L + E WL I L ESRS PG + ++ Sbjct: 142 TDISLPLLRDMPSMLHIK-TEEEPELAWLNHLIKTLAYESRSLQPGNAVVVDRLTEVLVI 200 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R + L +L + + + P AWTVESL MSR SFA F Sbjct: 201 QLLRWHMRHQRNTPGYFQALGDDKLSRALILIHQEPSKAWTVESLGRAVSMSRTSFANRF 260 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + + G TPLA L++ R+ IA + L ++ IAE VGY SE+SF KAF + G +PG+ Sbjct: 261 QSIVGMTPLAYLSQWRMHIAYGLLVEGELSMLSIAEQVGYKSEASFGKAFKKIVGISPGK 320 >UniRef50_B2HZJ1 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HZJ1_ACIBC Length = 321 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 134/309 (43%), Gaps = 33/309 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS+ + +W + S + + + G+ +++ E T Sbjct: 7 MDALSKFFDDIHLNKSEYIYIKAQGEWA--FKTQDQSALLAYIVLTGSVYIQLNVSEKIT 64 Query: 61 LRPGNVVLLPQNSAHR------------------------------LSHVDNESTCIVCG 90 R G+++L+P AH L +E+T ++C Sbjct: 65 ARAGDIILIPSGKAHHATDSKATASKLVDPVDITPLFNGHRHDPIELGSSTSENTLLLCL 124 Query: 91 TLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 ++ A + +LP + + N + WL+ + FL E++ PG D + + Sbjct: 125 RCQVDTYMAGPLINALPSIMHIQHENQATPPEWLQIGLYFLAVETQKIQPGHDKIIDHLV 184 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 + +R+ I Q++ ++N L L HP L + + P +WTVESLA MSR+ Sbjct: 185 SILLIECIRDHIQQMSDQQNWLGALTHPELSNALSAIHSQPEISWTVESLAEQCCMSRSK 244 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 FA LF + G PL L R ++A+Q L + I+ VGY+SE++F +AF R F Sbjct: 245 FANLFNSIIGEPPLTYLQHYRFRLASQYLRTSNLSIQQISNKVGYSSETAFSQAFKRVFD 304 Query: 270 CTPGEYRER 278 +P +YR+ Sbjct: 305 LSPKQYRQN 313 >UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01W15_SOLUE Length = 327 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 39/322 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGA----------GELSVIRWHALTQGAAK 50 MDA S +L G + + + W A G V+ +H + +G A Sbjct: 1 MDAFSEILSGVKLNGAVFFSAEFSAPWGFSSPASKQMAATLGLGASHVVLYHFVVEGGAL 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLSHV----------------------------DN 82 +E+P + L+PG++V+ P H +S Sbjct: 61 VELPERQSVELKPGDIVIFPHGDPHHMSSGAEATRPFPNYGIMSKIKARDLSPLHAGGGG 120 Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 E++ VCG + + S +F + +WL +I L +E+ S G + Sbjct: 121 ETSRFVCGYMTCDPYVSRPILSGLPAVFKVNIRTDRAGHWLENSILHLVEEAASGRVGSE 180 Query: 143 ALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 A+ +++ F +R ++A + ++ L+ P +G + + H WT+ LA Sbjct: 181 AMLAKLSEALFVDTLRRYVAGLPDQQVGWLAGARDPIVGKSLGLLHSRVSHPWTIADLAD 240 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 +SR++ + F P+A LT+ RL +AA+ + + V IA VGY SE++F+ Sbjct: 241 EVGISRSALVERFTRYLSEPPMAYLTRWRLTLAARSLEKTSRGVAEIAADVGYESEAAFN 300 Query: 262 KAFVREFGCTPGEYRERVRQLA 283 +AF REFG PG YR + Sbjct: 301 RAFKREFGSPPGRYRTHHKSSP 322 >UniRef50_B6A116 Transcriptional regulator, AraC family n=5 Tax=Rhizobium RepID=B6A116_RHILW Length = 323 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 84/304 (27%), Positives = 124/304 (40%), Gaps = 30/304 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L P TI +W + G I+ + + G L + E Sbjct: 1 MDPLSEVLSLLKPSSTISSGFDAAGEWSIQFGDQHRQ-IKCYVIVTGGCWLAVDGVDEAV 59 Query: 60 TLRPGNVVLLPQNSAHRLSH-----------------VDNESTCIVCGTLRL-------- 94 L G+ +LP+ RL+ T GT L Sbjct: 60 RLEQGDCFVLPRGLPFRLASDLGLSPVPAPTLFPPARAGGVVTLNGGGTFSLAGARFAVG 119 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 +SA L LP + L+ E + LR +I + QE S PG + + Sbjct: 120 GNSADMLLEMLPPIVHLS---RETERDALRWSIERMMQELSSHQPGGHLMAQHLSHMMLL 176 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R ++ + K L L I+ M P WT+ L A MSR+ FA+ F Sbjct: 177 QALRIHLSDGHQRKGWFYALADRNLSGAIRAMHANPARNWTLAELGETAGMSRSVFAERF 236 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G TP+ L++ R+ +A F PV V+A ++GY SES+F KAF R GC+P + Sbjct: 237 KATVGETPIEYLSRWRMLLACSRFESGDDPVSVVAPALGYQSESAFSKAFKRVVGCSPRQ 296 Query: 275 YRER 278 YR + Sbjct: 297 YRAQ 300 >UniRef50_A8M1A6 Transcriptional regulator, AraC family n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M1A6_SALAI Length = 317 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 118/308 (38%), Gaps = 31/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L +L L ++ + W + A + +HA+ G L + + L Sbjct: 4 DVLGDVLALARVDASLLATFDARAPWAIELPARQ--GASFHAVVAGTCWLTVEDMQPRQL 61 Query: 62 RPGNVVLLPQNSAHRLS---------------------------HVDNESTCIVCGTLRL 94 PG++VL+P H S H T I+C Sbjct: 62 APGDLVLMPTGVRHEFSTDLNLPTRRFDDDLKRSLIQPDGDLMLHGPGARTRILCAGYSY 121 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + + + SL + WLR + L E+ SA G D ++ Sbjct: 122 EAHGAHPVLSLLPPVLHVATAQPENGPWLRAVLDLLAHETGSAATGSDTAAVRLLDLLLI 181 Query: 155 LAVREWIAQVNTEKN--ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W+ L L P G + + E P WT+E+LA ++SRA+ A+ Sbjct: 182 HVIRVWLHTGGDTVGVSWLRGLHDPVSGRALAVLHEQPSLNWTLEALAEAVNVSRATLAR 241 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F G PL L++ RL +AA +LPV IA +GY SE +F++AF R G P Sbjct: 242 RFTRHVGEPPLRYLSRWRLSLAAHKLRNTSLPVAAIARDIGYTSEFAFNRAFARAHGHPP 301 Query: 273 GEYRERVR 280 G YR R Sbjct: 302 GRYRRSAR 309 >UniRef50_Q2BP83 AraC-type DNA-binding domain-containing protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP83_9GAMM Length = 306 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 26/301 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS +L + I + W + + +H + G + L + E L Sbjct: 4 DALSDILKWLRLKAEIYVHADFQGCWAVDTSGSRK--VPFHLVNSGRSWLHLEGQEPRLL 61 Query: 62 RPGNVVLLPQNSAHRLSH--------------------VDNESTCIVCGTLRLQHS-ARY 100 G++V+ P+++ H LS D + T + CG + A Sbjct: 62 SAGDLVMFPRDTTHYLSSESLCPTPALVEETLNNQGDMGDGQITGLACGFFEFESQEAWP 121 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 L LP+ + L + S N R + L E PG + + F +R Sbjct: 122 ILDKLPDAVVLELSDTSRLGN-TRALLQLLIAELEEHGPGYLQSVNHLTHVLFIHILRSQ 180 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 + + + +L L HPR+G + Q+ P AW++E LA A MSRA+FA F+ ++G Sbjct: 181 LDNIGS--GLLKALFHPRIGLSLSQIHSQPEKAWSLELLAREAGMSRAAFASEFKALTGK 238 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 T ++ L++ R+ A ++ L + IAE GY SE +F KAF + G PG R R Sbjct: 239 TAMSYLSEWRMLQATELLRSTNLSTIEIAERCGYLSEVAFRKAFKKVTGTAPGAVRSEGR 298 Query: 281 Q 281 + Sbjct: 299 R 299 >UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQD3_9PROT Length = 325 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 131/311 (42%), Gaps = 30/311 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L +G S W + + R+H + QG + P+G Sbjct: 1 MDVLDDVLDTLNLKGAFYFRTDFSSPWAVTVPDLRQA-ARFHLVVQGRCHVGFPSGASAD 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGTLR 93 + PG++VL+P+ +H L+ V T +VCG Sbjct: 60 IGPGDLVLIPRGQSHVLADVAGREAPPLETVLAGYDGRGVLVVGTGDSSATTQMVCGHFT 119 Query: 94 LQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + A + L +LPE L + WL + + + ++ S G A +++ Sbjct: 120 FRAGADHPILRALPEYL-VTTNAMRARRPWLDDILRLVVRQVFSDTIGSTATVTRLSEIV 178 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 F +R I Q +++L ++G +Q + P +WTVESLA+ MSR+ FA+ Sbjct: 179 FIELLRVGIGQSAGLRSVLEAFQDQQIGGALQLIHAEPERSWTVESLAASVGMSRSRFAE 238 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F D+ G P++ LT RLQ A + V +A GY S ++F +AF +FG P Sbjct: 239 RFSDLMGAGPMSYLTDWRLQKALSLLDDARCSVQQVASRTGYQSPAAFTRAFTGKFGLAP 298 Query: 273 GEYRERVRQLA 283 EYR +A Sbjct: 299 TEYRRSPDNIA 309 >UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacteria RepID=B9JNI2_AGRRK Length = 324 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 32/302 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L P+ + G DW + G E I+ +A+ G L + + + Sbjct: 1 MDPLSDVLSLLKPRSYMFGGFDAGGDWSIRFGQHE--GIKCYAVVSGQGWLLVESVSDAV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNEST------------------------CIVCGTLRL- 94 L G+ +LP+ L+ + S IV G L Sbjct: 59 RLTTGDCFVLPRGWPFVLTSNPSLSPIDYRQLFPTRPNGSMRVLNNGGDFSIVGGHFTLT 118 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 L LP + + + LR + ++QE R PG + Q+ T Sbjct: 119 GGHVGVLLAMLPPIVHI---RTEADRESLRWCMERMRQELREPQPGGFLIAQQLAYTMLV 175 Query: 155 LAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R +A+ T L L ++ I M E P H WT+ SLA A MSR +F Sbjct: 176 QALRLHLAEGVTGGVGWLFALADRQMAVAITAMHEDPAHRWTLASLAERAGMSRTTFTLK 235 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F++ GT+P+ LT+ R+ +A + + + + VIA S+GY SES+F AF R GC+P Sbjct: 236 FKETVGTSPMDYLTRWRMMVAGERLTHSSDSISVIALSLGYESESAFSTAFKRMMGCSPR 295 Query: 274 EY 275 +Y Sbjct: 296 QY 297 >UniRef50_A0L3B8 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=A0L3B8_SHESA Length = 311 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 134/307 (43%), Gaps = 32/307 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + DW + E ++ R+H +T G E+P ++ Sbjct: 1 MDVLSEILDKVELTSSYWYRTSFAGDWGISLPQEE-NLARFHIVTHGEFWYEVPKLKLKA 59 Query: 61 LRP-GNVVLLPQNSAHRLSHVD------------------------NESTCI----VCGT 91 L G++++ + H ++ + + + VCG Sbjct: 60 LAEQGDILIFFKGMEHTMASAPKIKAEPAVEFRAKANLTEAQVLEYGDQSKLKANVVCGH 119 Query: 92 LRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA 150 + FL SLP + + ++S WL + ++QE++S +PG + L ++ Sbjct: 120 FCFNGGPDHPFLNSLPNVVHIKSADNS-HSPWLAMLLSIIEQEAKSGLPGSNTLVRKLTE 178 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F A+R + + N L+ +P+L ++ + W ++ LA IA MSR ++ Sbjct: 179 IIFVQALRIHMYKSNKNAGFFKLIENPQLSKTLEAIHHSLDKKWGLDDLAGIAGMSRTNY 238 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F+++SG TPL LT RL+ A Q+ V ++E++GY + F K F ++ G Sbjct: 239 SVKFKELSGMTPLDYLTYCRLEKAKQLLKESGKSVPEVSEAIGYPAHEHFQKLFKKKIGK 298 Query: 271 TPGEYRE 277 TP YR+ Sbjct: 299 TPSAYRK 305 >UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JN73_RHOER Length = 379 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 9/279 (3%) Query: 4 LSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRP 63 LS +L + +G CV G ++ + AG ++ H G + L P Sbjct: 99 LSHVLEVVHLRGDQIHRCVHGENFTVDVPAGVRAL---HIAEHGDIVIRTQGKAPIELGP 155 Query: 64 GNVVLLPQNSAHRLSHV----DNESTCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSV 118 G +VLLP AH + + TC + GT L +A+ L+ LP+ + L Sbjct: 156 GELVLLPHGHAHTIENAMPMHPKNETCWLFGTFTLDDVAAQRLLSVLPDFVELR-ATQGT 214 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 WL + L E PG + S+I F +R W + L+ + PR Sbjct: 215 PVEWLDVSSRLLGAEVDDPKPGSSVMVSRILDLLFVQILRAWARADGSNGGWLTAAMDPR 274 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 +G ++ + P WT++ LA+++ +SR+SFA+ F + G TP A +T+ RL AA++ Sbjct: 275 IGQALEAVHNDPSRNWTIDELATLSTLSRSSFAERFSRLVGQTPGAYITERRLDRAAELL 334 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + T PV IA +VGY S+++F +AF R F +P +R+ Sbjct: 335 VQTTEPVGTIAITVGYESDAAFSRAFRRRFDASPLNWRK 373 >UniRef50_A3Y9X7 Transcriptional regulator, araC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9X7_9GAMM Length = 310 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 122/312 (39%), Gaps = 35/312 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIF 59 MDAL+ +L + W + E S +H + +G+ L + + I Sbjct: 1 MDALTDVLKTLRLNTQTYFCSDFHAPWGIV--MDEASEGMFHVVIEGSCFLNIEQSQTII 58 Query: 60 TLRPGNVVLLPQNSAHRLS-HVDNEST-----------------------------CIVC 89 L G++V P AH +S H D+ ++C Sbjct: 59 ALNQGDIVAFPSGGAHWISDHQDSPKMPSHFVVDKIRSGESPFKERAKHLNKEIKNTLMC 118 Query: 90 GTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 G+ ++ F+ LP + + + E W+ E + L +ESR+ PG + ++ Sbjct: 119 GSFSYDTKMKHPFIRDLPCFIHIKS-EQNNEQRWMSELVATLSRESRTPSPGSSLMLDRL 177 Query: 149 CATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 F +R ++A + N L+ L ++G + + WT+E L MSR+ Sbjct: 178 TEVLFIQIIRYFLASQPNKHNYLAALNDQQIGTTLNLIHAEESAHWTIEKLGEEVAMSRS 237 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 +F F + G P L R+Q A + IAE GY+SE++F KAF F Sbjct: 238 AFTDKFSKLVGQAPKTYLLNWRMQKAKTRLESTDDSMYQIAEDAGYSSEAAFSKAFKAFF 297 Query: 269 GCTPGEYRERVR 280 TPG R + Sbjct: 298 AETPGFVRRASK 309 >UniRef50_Q7MC25 AraC-type DNA-binding domain-containing protein n=10 Tax=Gammaproteobacteria RepID=Q7MC25_VIBVY Length = 300 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 12/286 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M+ +S +L G++ + + W +L +H + +GA + G I Sbjct: 19 MEVMSDILRAIRVVGSVYFCSQVEAPWTKTFN--DLDHASFHMIRRGACWANV-DGRIEQ 75 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE--------STCIVCGTLRLQHSARYFLTSLPETLFLA 112 L G+++ L H LS E ST ++CG+ +A L + + + Sbjct: 76 LNAGDLIFLGPGQNHLLSSQSPEKGKSDLTESTLLLCGSFSFTRTATTPLLDVFPRVTIV 135 Query: 113 PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILS 172 +Y WLR L E S PG + + +++ +R + T L Sbjct: 136 RDQDLAKYPWLRSTFDQLSSEYLSQGPGSELIVNKLTEIILVELIRINFGREQTSP-FLE 194 Query: 173 LLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQ 232 L R+ +Q + + P WT+E++A+ MSRA+FA F + G LT LR+Q Sbjct: 195 ALNDKRISRALQLLHDHPETGWTLETVANQIGMSRAAFANRFSSLVGKPMFEYLTNLRMQ 254 Query: 233 IAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 A ++ LP+ IAE VGY SE +F F + G TP +R + Sbjct: 255 KAQELLLESLLPIDEIAEQVGYESERAFTLTFKKHTGTTPKRFRAQ 300 >UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=Burkholderia RepID=Q397S2_BURS3 Length = 322 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 120/305 (39%), Gaps = 31/305 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L P+ + DW A I++ A+ +G+ + E Sbjct: 1 MDPLSDVLTLLKPRSQFYASLDAAGDWSFSFPANP--GIKFTAVVRGSCWGIVDDLAEPV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVD------------------------NESTCIVCGTLRLQ 95 PG+ LL LS ++ G + Sbjct: 59 RFNPGDCFLLNSGRRFVLSSDPALPPADCQPVMDAAARDGVAVWNGGGEVLLISGRFDVS 118 Query: 96 HS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 S A +LP + + E LR ++ L +E R PG + + + Sbjct: 119 ASHAAPLFDTLPAIVNVPSATGHAEV--LRWSLEQLAEEVRQERPGSALMATHLVHCMLV 176 Query: 155 LAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R + N L ++GA I+ + P H WT+ LA IA MSR+ FAQ Sbjct: 177 QVLRLHLETSTNLSPGWFLALSDRQIGAAIRAIHADPAHPWTLAELAKIAGMSRSGFAQR 236 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F+++ G T + +T+ R+ AA + V IA S+GY SES+F AF R C+P Sbjct: 237 FKELEGGTAIGYVTRWRMMTAANLLRDGEQSVSSIAFSLGYESESAFSTAFKRTMSCSPL 296 Query: 274 EYRER 278 +YR + Sbjct: 297 QYRRQ 301 >UniRef50_B3PSX8 Probable transcriptional regulator protein, AraC family n=3 Tax=Rhizobium RepID=B3PSX8_RHIE6 Length = 326 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 72/304 (23%), Positives = 128/304 (42%), Gaps = 32/304 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS +L G C L W + +L +R+H +++G + L Sbjct: 15 DALSEILRDFRLSGVNYGRCELRHPWSIAFAQQQL--LRFHFVSEGPCWIHTEAQGWQEL 72 Query: 62 RPGNVVLLPQNSAHRLSHVD---------------------------NESTCIVCGTLRL 94 + G++VLLPQ HRL+ ++ + CG++ L Sbjct: 73 QDGDLVLLPQGVEHRLASKPDVVGDSLKSCQVTKLGGNVCEVVQEGTGATSTLFCGSMAL 132 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 +A L +L + + + + + + + E+ G + S++ Sbjct: 133 GANALNPLIALMPPI-IKGCDVAGNDPIVGPLLAAMTAEASQPQIGSATVLSRMADVLVA 191 Query: 155 LAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R W+ + L+ + P +G + M PGH WT+E+LA +A SR+ FA+ Sbjct: 192 RLIRCWVNCSGASTSGWLAAIRDPHIGRALAAMHRDPGHDWTLETLAGVAGQSRSIFAER 251 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F + G L +LR+Q+A ++ + + V +A +GY SE+SF +AF R +PG Sbjct: 252 FSAILGEGAARYLARLRMQLARELLGQ-NMSVAAVASQLGYESEASFARAFKRITSVSPG 310 Query: 274 EYRE 277 R Sbjct: 311 VVRR 314 >UniRef50_Q21EK5 Histidine kinase n=2 Tax=Saccharophagus degradans 2-40 RepID=Q21EK5_SACD2 Length = 292 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 23/298 (7%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M A + + L + I N + +WQ+ A + +H +T+G L +P Sbjct: 1 MTASAGFIRLLNAKVDIYHNAKICGNWQI--NAHHVGRTCFHVVTEGMCLLALPGQADCV 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN----------------ESTCIVCGTLRLQHSA-RYFLT 103 LR G++VL P+ H L VD E T ++C +++L H A RY L Sbjct: 59 LRTGDLVLFPKEIEHTLMPVDPLAGEQQHLPYVQAQHLEGTGLLCASVQLNHGAGRYLLD 118 Query: 104 SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ 163 ++PE L + ++ WL L+ E P D + ++C FT A+ I Sbjct: 119 AIPEVLII---RNNSANAWLSPLTELLRIEHYQQGPLGDVVIQRLCELMFTYAMANCIED 175 Query: 164 VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPL 223 + +L+L HPRL A IQ M + P +W++E+LA A MSR +FA F+++SG TP+ Sbjct: 176 STVQTGLLALYAHPRLSAAIQAMHDHPAKSWSLEALAQQAAMSRTAFATAFKELSGWTPM 235 Query: 224 AVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 LT R+Q+A + + PV ++A+ +GY SE++F +AF EF T GE R R Sbjct: 236 QYLTWWRMQLAWHLLADGE-PVAIVADKIGYQSEAAFSRAFKSEFKQTAGEVRRGARN 292 >UniRef50_B5JV28 Transcriptional regulator n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV28_9GAMM Length = 314 Score = 243 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 132/314 (42%), Gaps = 37/314 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL G K L W++ V +H +TQG L Sbjct: 1 MDTLSLLLNDIRLSGARFKRAELQPPWKMH--LHTPGVASFHVVTQGQCILVRGQEAPLE 58 Query: 61 LRPGNVVLLPQNSAHRLS----------------HVDNESTC----------------IV 88 + G+VV+LP+ AH L+ H+D+E + +V Sbjct: 59 VHTGDVVILPRGPAHDLADSAGSLQAASAIDLKQHLDSEQSGGVQTLYNISHPQSADHMV 118 Query: 89 CGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 G AR ++LP+ + ++ S +WL + FL E + A+ ++ Sbjct: 119 SGYFEFDSDLARPLFSALPDLIHYRAMD-SETPDWLHFGMMFLNTEIAAQRSAQQAIINR 177 Query: 148 ICATFFTLAVREWIAQVNTEKN-ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 I +R+++ + L L P L A + M P W+V LA IA +S Sbjct: 178 IADILLIECLRDYVDNLPEGSGNWLLALKDPALSAALSAMHSQPDKQWSVPQLADIACLS 237 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 R+SFA F V G PL+ LT R+++AA P+ IAE VGY S+++F +AF R Sbjct: 238 RSSFANRFGKVLGEPPLSYLTAHRMRLAAWQLRNSNQPICHIAEQVGYQSDAAFSQAFRR 297 Query: 267 EFGCTPGEYRERVR 280 C+P YRE R Sbjct: 298 IHDCSPSRYREHSR 311 >UniRef50_D1V7I4 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D1V7I4_9ACTO Length = 308 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 87/306 (28%), Positives = 127/306 (41%), Gaps = 37/306 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L T+ + W L G + +H + QG L + Sbjct: 1 MDVLTDVLAALETGPTLCARTRAHAPWGLRFGGNQ--GFGFHVVLQGTCWLSSGDDQPRA 58 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 LR G+VVLL + H L+ T ++ G Sbjct: 59 LRAGDVVLLAGGTEHTLADAPTTPAVTFRLDRERQSTRIGHEHVAGVAGGARTVLLSGAY 118 Query: 93 RLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 RL+ L +LP+ + L N L A+ L E PG +A+ S + Sbjct: 119 RLEKRRPHPLLATLPDVVHLPNRRR----NGLHAAVDLLGAEVEEQEPGAEAIVSSLVGA 174 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R W Q + L P +G + +M P WTVE L + A +SRA+F Sbjct: 175 LLVYILRAW--QEDHPSGWSRALADPAVGPSLHRMHRDPARPWTVEQLGAAAGVSRATFT 232 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G PL LT+ RL AA+M ++ +P+ V+A SVGY SE +F KAF RE+G Sbjct: 233 RRFTALVGEPPLTYLTRWRLTSAARMLRQQDVPLSVVAHSVGYTSEFAFAKAFKREYGLA 292 Query: 272 PGEYRE 277 PG YR Sbjct: 293 PGTYRR 298 >UniRef50_A9WHL1 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Chloroflexus RepID=A9WHL1_CHLAA Length = 329 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 33/306 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD L+ +L L + ++ LGS W L + +V +H L +G + E Sbjct: 1 MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAV--FHVLHRGNGFFRVAGTPEWT 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDN-----------------------ESTCIVCGTLRLQH 96 LR G+++LLP H L + S ++CGT ++ Sbjct: 59 PLREGDLLLLPHGQEHLLLETPDTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEY 118 Query: 97 -SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A LP+ + + L + + E+ S P + + ++ F Sbjct: 119 VHAASLFRYLPDVIHIP----YHAARPLNRVLELMADEAESQRPAKEVVLRRLADILFVQ 174 Query: 156 AVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 V+ W+ L P +G + M P W V SLA SR++FA F Sbjct: 175 IVQYWVEMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAARF 234 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMF-SRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 + G P+ LT+ R+QIA+++ +L V +A VGY SE++F KAF R G P Sbjct: 235 TALVGEPPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAPT 294 Query: 274 EYRERV 279 YR Sbjct: 295 AYRSAA 300 >UniRef50_B6A5N0 Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B6A5N0_RHILW Length = 301 Score = 242 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 74/298 (24%), Positives = 119/298 (39%), Gaps = 24/298 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L L + + + W G + I +H + +G A L Sbjct: 1 MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRLDDG--AAIAFHLIRRGGAWLRRDGQADVL 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN--------------------ESTCIVCGTLRLQHSARY 100 L G++V+L + H L E T I CG + Sbjct: 59 LEEGDLVILSGGTPHELVDEPETKAEPVECFGKRKFDLADCFERTEIFCGQFQPDVVRGQ 118 Query: 101 FLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 F ++ LP + L + + + L E S PG + L ++ + +R Sbjct: 119 FGSAALPPFVHLKSHEVAGDAG-ITGLTTLLTSELDSERPGTELLMERLADSLLVYVLRS 177 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 AQ LS + +L V + + P WTV+++A A +SRA+FA+ F G Sbjct: 178 AAAQAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRFNKRVG 237 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 PL LT R+ +AA +P+ ++A +GY SE++F +AF + FG PG YR+ Sbjct: 238 EPPLGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGAYRK 295 >UniRef50_O31249 Transcriptional regulator (XylS/AraC family) n=5 Tax=Acinetobacter RepID=O31249_ACIAD Length = 306 Score = 242 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 33/308 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS++ + +W A + + H + G+A + G T Sbjct: 1 MDALSKIFDDIHLNKSEYLYVKTQGEWAFHMLAQDALIA--HIILMGSAHFTLQDGTTQT 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVC-----------------GTLRLQHS------ 97 G++VL+P AH +S+ D ++ I C GT H Sbjct: 59 AYSGDIVLIPSGQAHFVSN-DAQNKLIDCSNIQSFFDGHRNDAIELGTTSSDHGLIFTVR 117 Query: 98 -------ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA 150 L +LP + + S WLR + F+ E++ PG D + + + Sbjct: 118 SHIDMHMGSPLLNALPSLIHIHHAMSSTGPEWLRVGLYFVALETQRIQPGRDKIFDHLMS 177 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F VR+ IAQ++ K+ L+ L+HP L + + P WTVESLA MSR+ F Sbjct: 178 ILFIECVRDHIAQLDDPKSWLTALMHPELSNALAAIHAYPEKPWTVESLADQCCMSRSKF 237 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 A LF+ + TPLA L + RL++A Q+ L + IA VGY+SE++F +AF R+F Sbjct: 238 ATLFQSIVHETPLAYLQQHRLRLAVQLLKTSQLNIQQIANKVGYSSETAFSQAFKRQFEQ 297 Query: 271 TPGEYRER 278 +P YR++ Sbjct: 298 SPKHYRQQ 305 >UniRef50_A6UH43 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Proteobacteria RepID=A6UH43_SINMW Length = 329 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 134/304 (44%), Gaps = 34/304 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ LL G C L + W + A E + R+H + G L + G+ L Sbjct: 15 DFLTELLRGLRLDGVDYVRCELTAPWGISFPAQETA--RFHFIC-GDCWLRVADGDWIEL 71 Query: 62 RPGNVVLLPQNSAHRLSHVDNE---------------------------STCIVCGTLRL 94 + G+ VLLP+ H L+ + E +T + CG+LR Sbjct: 72 KRGDAVLLPRGGEHALASMPGEKLAPLDAYSVQEVCHCVYNVCGGGRGETTILFCGSLRF 131 Query: 95 QHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + + L +P+ + + + S + + + +E ++ G + +++ Sbjct: 132 NMDSMHPLLRMMPDVMRINALTASEPA--IPHMLDAMAREVGASRVGSGGVLARLADVLA 189 Query: 154 TLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 L +R W+ ++ + HP LG VI M P AWTV+SLA + SR+ FAQ Sbjct: 190 ALIIRSWVEHGCGNTSGWVAAVRHPGLGRVIAAMHLDPEKAWTVDSLARLMGASRSGFAQ 249 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F V G TP L ++R+ A Q +R+ + + V+A +GY SE+SF +AF R G P Sbjct: 250 QFASVVGETPARYLAQVRMHQARQWLTRDRMRISVVARRLGYDSEASFSRAFKRVIGQPP 309 Query: 273 GEYR 276 YR Sbjct: 310 SHYR 313 >UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MF52_VIBVY Length = 308 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 23/294 (7%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 S L+ + N + +W + E + +H +T+G +L++P TL Sbjct: 21 PFSHLIQHMRLDVEVYHNAQVCGNWVI--NKDEATHTSFHMVTKGDCRLDVPDVMQETLN 78 Query: 63 PGNVVLLPQNSAHRLSHV----------------DNESTCIVCGTLRLQHSARY-FLTSL 105 G++V+ P+ H L+ + D +T ++C + QH + L +L Sbjct: 79 TGDLVIFPKELNHSLAPITPLSGEQQHLSYAQCQDPNATGLLCAKVEFQHIGIHGILQAL 138 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN 165 P + WL + + ES G D + ++ F A+R ++ Sbjct: 139 PCVFVIK---AEESEKWLTPIMSMILAESYQDGTGSDVIIGRLAELLFINALRAYLYSHP 195 Query: 166 TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAV 225 + +LSL HP+L VI + + P H WT+ESLA MSR++ A FR +SG+T + Sbjct: 196 EQVGLLSLYAHPKLRHVISAVHQQPQHDWTLESLAKHCAMSRSALANTFRQISGSTVIEY 255 Query: 226 LTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 LT R+Q+A + ++AESVGY SE++F +AF + F +PG+ R+ Sbjct: 256 LTWWRMQLAWSQIKAGD-SIALVAESVGYRSEAAFSRAFKKAFLISPGKARKEA 308 >UniRef50_B2IIY8 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=B2IIY8_BEII9 Length = 313 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 123/306 (40%), Gaps = 25/306 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L L + + G DW + G + I++HA+ G+ + + Sbjct: 1 MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHD--GIKFHAVVTGSCWISVEGDAFTR 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTL---------RLQHSARYF----LTSLPE 107 + G LLP+ R++ + V L Y +L E Sbjct: 59 VNTGECFLLPRGRPFRIASDPSVEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLSE 118 Query: 108 ---------TLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L + LR + ++QE PG + Q+ A+R Sbjct: 119 GQSELLLNVLPPLLHIRDEPGSATLRWCVERMRQELAEGQPGDFIVAQQLATIVLVQALR 178 Query: 159 EWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 +++ TE+ L L RL A I M P WT+ +LAS+A MSR +FA FR+ Sbjct: 179 LYLSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFREA 238 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 G +P+ L R+ +AA+ + + IA VGY SE SF AF R G P E+ Sbjct: 239 VGLSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREFSR 298 Query: 278 RVRQLA 283 +Q++ Sbjct: 299 LQKQIS 304 >UniRef50_Q09DL8 Transcriptional regulator, AraC family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09DL8_STIAU Length = 755 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 79/302 (26%), Positives = 124/302 (41%), Gaps = 30/302 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D L+ +L + L + W + GE + I +++G A LE G T Sbjct: 428 DVLAEVLDSMRLSTLVYGRFDLHAPWGIQFPDGEAAHIV--VVSRGGALLEFEGSGAPLT 485 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGTLR 93 L G++ LLP ++ L + + +V G + Sbjct: 486 LSAGDLALLPHGGSYCLRDAEGSPIHVMEGGACQRALALGAPLRLGGQGARSTLVTGAFQ 545 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + R L + + S+ L A+ L ES S PG + S++ Sbjct: 546 FGAAPRTLLFEKLPRVIHVAADSSMAAPSLASAVQLLIAESTSTRPGTTVVMSRLADILL 605 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R IA + + L L P++G + + E P +WTVESLA+ +SR+ FA Sbjct: 606 VQAIRTHIAAGGCQNHGLCALADPQIGKALALIHERPAESWTVESLAAAVALSRSGFAAR 665 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F + G PL L + R+ AAQ+ L + +A GY SE+SF++AF R G PG Sbjct: 666 FSSLVGDPPLEYLARWRMTKAAQLLRESNLSLSEVAAHAGYHSEASFNRAFKRWEGVAPG 725 Query: 274 EY 275 Y Sbjct: 726 AY 727 >UniRef50_Q485B0 Transcriptional regulator, araC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q485B0_COLP3 Length = 304 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 31/305 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS +L QG++ N S W L + + +H + +GA L++ + Sbjct: 1 MDSLSSILKSVRLQGSVYFNACFASPWGLDLDQNQRAY--FHLIIRGACYLQLGDKKE-Q 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDN--------------------------ESTCIVCGTLRL 94 L+ G++++LP +AH+L + + I+CG Sbjct: 58 LQGGDIIILPHGTAHQLFDDPSSVRVNATGVVPGLIDGINPFEGVGHSQDIDILCGYFNF 117 Query: 95 QHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 +S YFL +LP+ + L H +++L A+ F+ QE++ G + L ++ F Sbjct: 118 NNSTPSYFLNALPDVIHLTQ-EHRTHFSFLDNALSFITQETKMKNLGREILIDRVTELLF 176 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R +I E+NI S L L +Q M WTVESLA MSR+ F++ Sbjct: 177 VQIMRVYININGNEENIFSALSDRTLSEALQLMHTESDKNWTVESLAKAIGMSRSRFSEH 236 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F + G TP+ L R+++A Q + +I+E VGYAS+S+F KAF + FG TP Sbjct: 237 FHNYIGETPMRYLHTCRMEVAKQKIEETESTLNIISEEVGYASDSAFKKAFKKFFGNTPS 296 Query: 274 EYRER 278 +R++ Sbjct: 297 TFRQK 301 >UniRef50_B9XHR2 Transcriptional regulator, AraC family n=1 Tax=bacterium Ellin514 RepID=B9XHR2_9BACT Length = 326 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 127/317 (40%), Gaps = 37/317 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ ++ L + L + + + I + +G+ L + + Sbjct: 1 MDVLADIMSLLRTSTHLYGKLDLSAPFGFKFPGEKGICI---IVLRGSCFLGVDKESLVP 57 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 L G+ VLLP + L T +V G Sbjct: 58 LVGGDFVLLPAPKFYSLRSSPKLPLRPVEQITSEKEFHRTRLISFDGGEGPPTTLVAGCF 117 Query: 93 RLQHSARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 L LP + L + W + F+ E+ +PG A+ ++ Sbjct: 118 TFSSPESELLVKHLPPIIHLQASGNRAT-PWFHSTLQFIAAEAAQNLPGGTAIVDRLAEV 176 Query: 152 FFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F LA+R + + L L P++G ++QM PG WTV LA MSR+SF Sbjct: 177 LFVLAMRTRTDSFSSANPSWLRALTDPQIGEALRQMHAEPGRPWTVSDLARTVSMSRSSF 236 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET-LPVVVIAESVGYASESSFHKAFVREFG 269 A FR++ G TPL LT+ R+ AA M + + IA +VGY SESSF K F R G Sbjct: 237 ADRFRELVGETPLGHLTQWRMVRAANMMCSNRPMKMAAIASAVGYESESSFGKVFRRVMG 296 Query: 270 CTPGEYR--ERVRQLAP 284 +PG+YR +++ Q P Sbjct: 297 ISPGKYRLTKQIDQSTP 313 >UniRef50_B5WHE2 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WHE2_9BURK Length = 321 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 120/307 (39%), Gaps = 32/307 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L + + DW + GA + I++HA+ +G + + + Sbjct: 1 MDPLSEVLSLVKLRSYLSGGFDANGDWAVQFGAHD--GIKFHAVLRGQCWVLVEGVPDPV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRL- 94 + G LL + RL+ + G L Sbjct: 59 KVSEGECFLLARGKPFRLASDLAVEPVDVRTLLPQVHDGRVVTYNGGGEFLSIGGYFTLA 118 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 A L+ LP + + +R + ++ E A PG + Q+ Sbjct: 119 DGPADLLLSMLPPLVHV---REEPNRATVRWYVERMRHELSDAQPGDFIVARQLATLVLI 175 Query: 155 LAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R ++ E L L R+ A I M PG WT++S+A A MSR +FA Sbjct: 176 EALRLHLSNERRESVGWLFALSDKRMRAAIDAMHASPGRRWTLQSMAEQAAMSRTTFALR 235 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F++ G +P+ LT+ R+ +AA + V I ++GY SE SF AF R C+P Sbjct: 236 FKETVGLSPMEYLTRWRMMLAADRLTHSRDSVSEIGLALGYESEKSFSTAFKRVMNCSPR 295 Query: 274 EYRERVR 280 Y + + Sbjct: 296 RYARQRK 302 >UniRef50_A2SEH8 Transcriptional regulator, AraC family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SEH8_METPP Length = 337 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 85/317 (26%), Positives = 129/317 (40%), Gaps = 40/317 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQ-LPHGAGEL---------SVIRWHALTQGAAKL 51 D LS LL G + W L G+ +L +I +H + G+ +L Sbjct: 19 DLLSDLLGSMHLAGMVLFRAAFREPWAVLTPGSAQLARVLPFRTEHIIPFHVIATGSCRL 78 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNES 84 +P E LR G+ VLLP +HRL Sbjct: 79 ALPGHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLPCQPWKDMPQVEHGGGGAV 138 Query: 85 TCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T I+CG L+ R L LP L ++P ++ WL I E+ PG + Sbjct: 139 THIICGFLQCDELLFRPILRHLPTLLHVSPDATPADH-WLGSTIRHTAAEASRTTPGSRS 197 Query: 144 LCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + ++ F +R+ + + + E + P G+ ++ + + P W+VE LA Sbjct: 198 MLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKLLHDAPLQDWSVERLARA 257 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 +SR A+ FR P+ L RLQ+AAQ P+ IA+ VGY SE++F + Sbjct: 258 VGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPLKTIADRVGYESEAAFSR 317 Query: 263 AFVREFGCTPGEYRERV 279 AF R FG PG +R R Sbjct: 318 AFKRHFGLPPGSWRLRQ 334 >UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RUT1_9PROT Length = 346 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 118/331 (35%), Gaps = 55/331 (16%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGA----------GELSVIRWHALTQGAAKL 51 D LS +L +G + G DW A G V+ +H + +G+ Sbjct: 4 DPLSDVLSSVRLRGAVFYYVSFGDDWAAETPASRQLADALMPGAEHVLAYHLIARGSGWA 63 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHV------------------------------- 80 + L G++V+ P+ +H LS Sbjct: 64 ATASEPPVRLNSGDIVMFPRGDSHVLSSAPGLRAQPDNDDWRVTTRNDPKPIAVAYHRGV 123 Query: 81 ---------DNESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFL 130 D ST +VCG + + +LP L L W+ + Sbjct: 124 LRPGAPLPADEASTVVVCGFVGCDLRPFNPLINALPRLLHL---GAGGVGAWVAPVLDQA 180 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEM 189 ESR G A+ ++ F A R + + + L+ L +G I + Sbjct: 181 VSESRQCRAGSAAVLERVSEMVFVDAARRHLESLPADASGWLAGLRDRHIGKAIGLLHAR 240 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 P WT++ L +SR++ Q F ++ G P+ LT R+Q A + V IA Sbjct: 241 PAEPWTIDELGRQIGLSRSALHQRFVELVGQPPMQYLTNWRMQRGACLLREGDATVATIA 300 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + VGY SE++F +AF R G P +R R Sbjct: 301 QEVGYDSEAAFARAFKRLAGTPPAAWRRAQR 331 >UniRef50_C9R1V8 MtrA n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=C9R1V8_AGGAD Length = 305 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVI-RWHALTQGAAKLEMPTGEIF 59 MD L +L+ L G ++ C+ +WQ+ H A E + +H + QG L + + Sbjct: 1 MDCLDKLIQLAQVSGEVNIRCLFQGEWQVRHDADENQYVGAFHLIEQGDCWLTLENQQ-I 59 Query: 60 TLRPGNVVLLPQNSAHRLSHV------------------------------DNESTCIVC 89 L+ G + LPQN H ++ ++ + C Sbjct: 60 HLQAGELFFLPQNRPHFIASKAQDNVIQTRITPSDAQEDQQDLFKVYHIGQNSPDLKMFC 119 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G L + + +LP L L S+ L I LQQE+ G +L + Sbjct: 120 GMLYYNKPS-LLIDALPSYLHL-----SLRDTPLLPLIQVLQQEADKTRSGAKSLIDSLV 173 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 F +R + + +L+ RL V+ Q+L P AW +++LA++A MSRA+ Sbjct: 174 TVLFIYILRHGLQNEQLNQGVLAGFQDKRLNPVLTQLLNAPQQAWNMDTLAALAAMSRAN 233 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F ++F+ G P LT+LRLQ AA + ++ ++ IA VGY SE+ F KAF +G Sbjct: 234 FMRVFQHTIGMAPGKFLTQLRLQQAALLLNKTQKSILAIALEVGYQSEAHFSKAFKIAYG 293 Query: 270 CTPGEYRER 278 TP +YR+R Sbjct: 294 MTPSQYRKR 302 >UniRef50_D1BRX4 Transcriptional regulator, AraC family n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BRX4_XYLCX Length = 324 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 81/304 (26%), Positives = 126/304 (41%), Gaps = 33/304 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D S L G + W + A + + +H LT G A + + G++ L Sbjct: 3 DPWSDALGDLELTGVFYATARMTEPWGIDLPALPWTAM-FHLLTAGRAVVSV-DGDVHEL 60 Query: 62 RPGNVVLLPQNSAHRLSHVD---------------------------NESTCIVCGTLRL 94 PG ++L+P + H++ +VCG + Sbjct: 61 VPGELLLVPHGTGHQILSAPDAPASGLWGIEREVVGERYERLVVDGGGAPARLVCGAVTF 120 Query: 95 -QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 L SLP + + +WLR A+ + E+ G D + +++ Sbjct: 121 ADPGVGRLLASLPAVVR---AHGGETGSWLRAAVDAIAHEAEHPRGGSDVVTARLADVIL 177 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 AVR+W+ L+ L LG V+ + P WT+ESLA++AH+SR++FA+ Sbjct: 178 VQAVRDWLDDAEPPSGWLAALRDDVLGPVLAAVHTDPARPWTLESLAALAHLSRSAFAER 237 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F V G P A + RL +AA+M V +AE VGY S FH+AF R G TPG Sbjct: 238 FAAVVGEPPAAYVAGWRLGLAARMLCEPGASVAAVAERVGYDSVPGFHRAFTRRHGMTPG 297 Query: 274 EYRE 277 +R Sbjct: 298 AWRR 301 >UniRef50_A8LC22 Transcriptional regulator, AraC family n=3 Tax=Actinomycetales RepID=A8LC22_FRASN Length = 311 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 130/313 (41%), Gaps = 35/313 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L ++ +GT+ G +W A +HA+T G A L P Sbjct: 1 MDVLADVLAVSGVRGTLGARIEAGENWGW--WAAASRGAAFHAVTAGTAWLASPGQSARQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE---------------------------STCIVCGTLR 93 L PG+VVLLP + H L+ + T I+C Sbjct: 59 LMPGDVVLLPSGTEHVLASDTDTLARTGAHAFDSWEWADSGAVRIGSGPVRTHILCAHYS 118 Query: 94 LQHSAR-YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + LT LP+ + + N L + + L +E G + ++ Sbjct: 119 HDPAVTTQVLTLLPDLVHIRADNAG---GCLDDTVRLLGRELAHPRLGTAVVLDRLVDIL 175 Query: 153 FTLAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 +R W+A + L +L P +GA + ++ E P AWT E+LA +SRA+ Sbjct: 176 LIQLLRVWLATGQARPAASWLGVLDDPVVGAAVAKLHEDPARAWTTEALAGEISVSRATL 235 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 ++ F V G TP A LT+ R+ +AA+ + IA SVGY S +F++AF R Sbjct: 236 SRRFPAVVGETPGAYLTRWRMDLAARRLRDTDDTLESIARSVGYTSVYAFNRAFTRARSQ 295 Query: 271 TPGEYRERVRQLA 283 PG YR R A Sbjct: 296 PPGRYRVSARDSA 308 >UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UPU4_9BURK Length = 319 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 115/303 (37%), Gaps = 32/303 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L Q + W L A I++ ++ +G L + ++ Sbjct: 1 MDPLSDVLALLRVQSVLSARLEGAGPWALRFAA--YRHIKFGSIIEGDRWLWIDGTADVV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDN----ESTCIVC------GTLRL--------------- 94 L PG+ LL + + + ES ++ G +R Sbjct: 59 KLAPGDFYLLTDGRPYCFASAPDAPLRESVDVLPPHPDDDGVVRFGQGRTRTVGAGGRFI 118 Query: 95 --QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 +R L +LP + + L + E+ PG A+ + + + Sbjct: 119 LDDDVSRLLLDALPPLIHIRSDAPGTRALELAS--KLIAMETEDVRPGAVAMAASLASIV 176 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W++ L L ++G ++ M W VE LAS MSR F++ Sbjct: 177 LVNILRAWLSGGKAPAGWLGALADAKVGRALRLMHGEVARRWKVEDLASAVAMSRTGFSE 236 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 FR G PL LT+ RL +A P+ IA +GY S ++F AF R +G +P Sbjct: 237 RFRVQVGLPPLEYLTRWRLTLACSALKAGDEPLAAIARQIGYESATAFSLAFRRMYGVSP 296 Query: 273 GEY 275 G Y Sbjct: 297 GRY 299 >UniRef50_Q21H00 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21H00_SACD2 Length = 297 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 125/296 (42%), Gaps = 31/296 (10%) Query: 13 PQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLRPGNVVLLPQ 71 Q ++ + + W + A V R+H +G L + + L G++V++P Sbjct: 1 MQSSLYFRTEMSAPWGVAVPAKG-KVARFHIAIRGQCWLRVEGENKPLFLANGDLVIIPH 59 Query: 72 NSAHRLSH---------------------------VDNESTCIVCGTLRLQHSARY-FLT 103 +AH + +VCG + L Sbjct: 60 GAAHVMGDTQETAAKPLGDVLSETQYTGEGPLVYGGGGAGCTLVCGEFAFDERETHPLLD 119 Query: 104 SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ 163 +LP L + + WL + F+ E+ PG A+ ++ F A+R + Sbjct: 120 NLPSVLSIT-ADQGHHAKWLDAVMGFVAHEAAQMRPGAHAIIHRLSDIIFIQAIRLLLDS 178 Query: 164 VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPL 223 LS R+ V+ ++ P H W+VESL IA+MSR++F+ F +++ +PL Sbjct: 179 SPHNIPFLSAFADNRISMVLSRIHAEPQHKWSVESLGQIANMSRSAFSNRFSELTQMSPL 238 Query: 224 AVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + +RL A+++ + IAE +GY SE++F AF ++F C PGEYR+R Sbjct: 239 QYVMFIRLNRASRLLIESDYSLGQIAELIGYQSEAAFSLAFSKQFDCRPGEYRKRA 294 >UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=D1TH46_9BURK Length = 347 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 127/326 (38%), Gaps = 43/326 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL----------PHGAGELSVIRWHALTQGAAK 50 MDA+S +L G + N + W L + VI +H + +G+ Sbjct: 1 MDAVSDVLRAVRLSGAVFLNGTFTAPWCLIGRTDASLCGAYLPPSERVISYHLIIEGSCW 60 Query: 51 --LEMPTGEIFTLRPGNVVLLPQNSAHRLSHV---------------------------- 80 L G + G ++++PQ H + Sbjct: 61 AKLAGDPGSAIHVHAGELIVVPQGETHIMGSAIDLSPVPSDSLLAGQMATAPGEVMTLSH 120 Query: 81 --DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 T IVCG L + L S LF + WL ++ E+ + Sbjct: 121 GGGGAVTRIVCGFLACDDTLNNPLLSALPRLFKIDMRQDPRAAWLESSLKLAAAEAAESR 180 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G + +++ F A+R I + + L+ + +G + + HAWTVE Sbjct: 181 AGGTIVLARLSELLFVEAIRSCIEALPENQTGWLAGVRDRYVGRALSLLHSQAAHAWTVE 240 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA +SR++ AQ F D+ G P+ L + R+QIAA + P+ +AE +GY SE Sbjct: 241 ELARKVGLSRSALAQRFTDLLGQPPMQYLARWRMQIAAHELRIGSKPLNAVAEQIGYESE 300 Query: 258 SSFHKAFVREFGCTPGEYRERVRQLA 283 ++F +AF REFG P +R+ Q Sbjct: 301 AAFSRAFRREFGMPPAGWRKSKGQAD 326 >UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC type n=9 Tax=Bacteria RepID=A7HAQ8_ANADF Length = 356 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 125/324 (38%), Gaps = 44/324 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGEL----------SVIRWHALTQGAAKL 51 D LS +L G + + S W VI +HA+T+G Sbjct: 27 DPLSDVLQSVRLSGAVFFHIEGSSPWVAEAPPSRAVAGIFMPRAQHVIEYHAVTRGGCWG 86 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN----------------------------- 82 + L G+V++ PQ AH LS Sbjct: 87 GIVGERPARLDAGDVIVFPQGDAHVLSSEPGLRAPPDLATYASLLDGPPPVHIPLGGGGA 146 Query: 83 ESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 + I+CG L L +LP L + L + +E+R PG Sbjct: 147 DRAEILCGFLGCDARPFNPLLATLPRVLHARLADARGSA--LETFMEAALRETRERRPGG 204 Query: 142 DALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 +++ +++ F VR ++A + L+ L +G + + P H WT++ LA Sbjct: 205 ESVLARLSELMFVEVVRSYLAALPAGNTGWLAGLRDEFVGRALALLHGRPAHPWTLDELA 264 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 +SR++ A+ F + G P+ L R+Q+AA + ++ V +A VGYAS+++F Sbjct: 265 RKVALSRSALAERFTQLVGRPPMQYLAGWRMQLAAGLLLGDSAGVSQVAAEVGYASDAAF 324 Query: 261 HKAFVREFGCTPGEYRERVRQLAP 284 +AF + G P +R R R P Sbjct: 325 SRAFKKAVGVPPAAWR-RSRSAKP 347 >UniRef50_B1JWG2 Transcriptional regulator, AraC family n=13 Tax=Burkholderia RepID=B1JWG2_BURCC Length = 315 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 132/315 (41%), Gaps = 35/315 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS+LL L +D C+L + +PH +H + GA +L G Sbjct: 1 MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGACRLRAADGRTLQ 60 Query: 61 LRPGNVVLLPQNSAHRL---------------------------------SHVDNESTCI 87 L G+ VLLP AH L + S + Sbjct: 61 LAEGDFVLLPAGGAHDLLDAAGGRSKPLVPLRDSHAGDGAVLPVKSNLDPAEPGGASVDL 120 Query: 88 VCGTLRLQHSARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 +CG A L +LP L + + S L+ L+ E+ + PG A+ + Sbjct: 121 LCGRFVYARGAGELLMRTLPPVLHVGLRDTSGAAP-LQLLTSVLRTEASNVQPGAGAIVN 179 Query: 147 QICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 + A+R + L+L RLG +Q +L+ P WTVESL + A MS Sbjct: 180 ALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPAQPWTVESLGAEAAMS 239 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 RA++A+ FR+ +G + A + ++R+ A + I ++VGY SE++F KAF Sbjct: 240 RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQADIGQAVGYQSEAAFGKAFRA 299 Query: 267 EFGCTPGEYRERVRQ 281 G TPG +R R+ Sbjct: 300 VLGTTPGRWRRARRE 314 >UniRef50_B2TGP8 Transcriptional regulator, AraC family n=13 Tax=Betaproteobacteria RepID=B2TGP8_BURPP Length = 323 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 37/317 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LSRLL L PQ ++D C+L + + HG E + +H + GA +E G Sbjct: 1 MDTLSRLLDLARPQASLDLRCLLSGAFDIDHGPLEAGIAPFHLVLDGACVVETADGTQRE 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC---------------------------------- 86 LR G+ +L P+ +AHR+ V + Sbjct: 61 LRTGDFMLFPRGAAHRVRDVQRSAVTAPLTQSHDGMLPLRRNDGSDSHDSLDSARIAADL 120 Query: 87 -IVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 ++CG S+ L +LP+ ++ + L+ I ++ E+ G A+ Sbjct: 121 DLLCGRFVYSPGSSALLLNALPDPFHVSLSGMET-LDSLQTVIALMRSEAERRQAGALAI 179 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + + +A+R Q +L+LL RLGA +Q ML P AWT+ L +A Sbjct: 180 VTALSHALLAIALRVHGEQNAAASGVLALLADARLGASVQAMLSAPERAWTIAELGDLAA 239 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSRA++A+ F + + T + LT++R+ IA + R I E+VGY SE++F KAF Sbjct: 240 MSRATYARHFNERASMTVMDFLTQIRMTIACDLLRRTQRSAAEIGEAVGYQSEAAFGKAF 299 Query: 265 VREFGCTPGEYRERVRQ 281 + G PG YR R ++ Sbjct: 300 QQSVGVPPGRYRRRPQE 316 >UniRef50_B9JLR2 Transcriptional regulator protein n=2 Tax=Rhizobiales RepID=B9JLR2_AGRRK Length = 328 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 31/299 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS++L L +G + + LG+ W L G + H +++G +L G+ Sbjct: 27 DFLSQILTLIRLRGELICSAELGAPWGLTFEPGSGYL---HVVSEGELRLTASDGKTVYA 83 Query: 62 RPGNVVLLPQNSAHRLS--------------------------HVDNESTCIVCGTLRLQ 95 R G+++++PQ + H + T +V G R + Sbjct: 84 RAGDLLIMPQGTGHVIGTPGAEPVEARGLLKAQLRDDNLAVRIQGGGPVTHLVTGAFRFE 143 Query: 96 HSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 L LP + + + E WL L E+R+A PG + S++ Sbjct: 144 GDNMPSMLAVLPSVIHIQGSMDADEKGWLEVLAQSLLSEARAAHPGSAIMISRLIDVLVI 203 Query: 155 LAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R W+ EK L+ L R+ ++ + + P TV LA++A MSR++FA+ Sbjct: 204 RAMRIWVRTAPPEEKGWLAALADARISRALKAIHDEPFRRRTVAELAAMAGMSRSNFAER 263 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G PL T+ RL +A+ M R V +A VGY SE++F +AF +FG P Sbjct: 264 FSTLVGAGPLHYQTRWRLLLASDMLRRSDARVSDVARRVGYDSEAAFSRAFKAQFGIPP 322 >UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R353_9RHOB Length = 314 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 70/306 (22%), Positives = 111/306 (36%), Gaps = 31/306 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS + D+ + + IR+H + +G+ L M L Sbjct: 7 DILSEIFTGLQISSDTYFRTHFAGDFSIAIPTEQRR-IRFHLVLRGSCWLCMEGEPPVFL 65 Query: 62 RPGNVVLLPQNSAHRLSHVDN--------------------------ESTCIVCGTLRLQ 95 G+V L+P +A + ++ ++CG + Sbjct: 66 EEGDVALIPNGAAQMIKSDPALPSVGLGELLTGGALRDGCLHVGEGADTNSLLCGFCQFD 125 Query: 96 HSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + L+SLP +L L + WL + + E+ G A+ +++ T Sbjct: 126 EELDHPILSSLPASLRLR-LQDLGSEPWLAATLKLIALEANFNGQGSSAILNRLIETIVI 184 Query: 155 LAVREWIA--QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 + R A + + ++ L L I + P W V LA IA MSRASFA+ Sbjct: 185 QSTRTLSARPSEDAQAGFIAALGDKSLSRAITEFHRAPEQNWQVTDLAEIAGMSRASFAR 244 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F G P+ + RL A + + L IA GY S SF K F + FG P Sbjct: 245 HFIRHVGKPPMEYVRDWRLMRARSLLTDTNLSSEEIATRCGYNSLPSFSKLFKKRFGMGP 304 Query: 273 GEYRER 278 G +R Sbjct: 305 GTFRRN 310 >UniRef50_A7HFH7 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFH7_ANADF Length = 327 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 118/301 (39%), Gaps = 34/301 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS +L L + + + E +R+H + +G + E L Sbjct: 23 DLLSEVLQDLRLAQASYGRSELTAPFGIEIPFKE--GVRFHFVVEGGCWILSAAREPIRL 80 Query: 62 RPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTLRL 94 G+VVLLP +AH ++ + IVC T+ Sbjct: 81 DAGDVVLLPHGTAHVMADRPGRRPLPLAEVAPHLIGNASYRIAHGGGGPRSLIVCCTIAF 140 Query: 95 QHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 A L LP L + L + + + E G + +++ Sbjct: 141 DGPTANPLLEMLPPVLLVR--RAETRDPMLSQLLEMMAGEVMERRIGSVTIMARLADIVM 198 Query: 154 TLAVREWIAQVNTE--KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 T +R WI L+ + P++G + ++ PGH WTVE+LA+ A MSR+SFA Sbjct: 199 TSIIRSWIEGQGDSNVSGWLAGVRDPQIGLALARIHRNPGHPWTVETLAAAAGMSRSSFA 258 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 Q F + +P L + R+++AA ++ V A VGY S++ F +AF R G Sbjct: 259 QRFVQLLNVSPARYLLQWRMRLAATWLRSGSMTVAEAAAQVGYDSDAGFSRAFKRAMGLP 318 Query: 272 P 272 P Sbjct: 319 P 319 >UniRef50_A7HS46 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Alphaproteobacteria RepID=A7HS46_PARL1 Length = 324 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 40/323 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL----------PHGAGELSVIRWHALTQGAAK 50 MD LS +L G I + W + P G ++I +H + +G Sbjct: 1 MDPLSDVLRSMRLTGGIFLEAEFTAPWSIVSRVEPEDCAPFGYVPRNLIAYHYVEEGELL 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN---------------------------E 83 L++ G ++LLPQN H L+ Sbjct: 61 LQLDGQPDLKAGRGEILLLPQNHPHILASGPGIAAAHSHDLVLPAPDGGLARIVHGGGGA 120 Query: 84 STCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T IVCG L + L+ LP L L V W+ F Sbjct: 121 RTRIVCGFLGNETPGDTLLSFLPPVLRL-DVPEDHTGQWIESTFRFASVALAGGGDRSAV 179 Query: 144 LCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + ++ F AV +A + EK L+ L P +G + + WT ++LA+ Sbjct: 180 VLGRLAELLFEEAVHRHVASLPEGEKGWLAGLRDPVIGRALALLHGRLDRPWTTDALAAE 239 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 +SR++FA F + G P+ L K R+Q+AA+ S V IA GY SE++F++ Sbjct: 240 VGLSRSAFASRFTALVGDPPMRYLGKWRMQLAARRLSDTPDSVARIAFDAGYESEAAFNR 299 Query: 263 AFVREFGCTPGEYRE-RVRQLAP 284 AF R FG P +R+ RQ P Sbjct: 300 AFKRSFGSPPATWRKENTRQGDP 322 >UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI96_CATAD Length = 315 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 81/294 (27%), Positives = 119/294 (40%), Gaps = 19/294 (6%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT- 60 D LS LL G + + H + +G L + Sbjct: 22 DLLSELLRSVRLTGERIVAYTPSPLFSVEFADRG----SLHIVEEGEVTLRIEGSPHVEH 77 Query: 61 LRPGNVVLLPQNSAHRLSHV-----------DNESTCIVCGTLRL-QHSARYFLTSLPET 108 L G+ VLLP+ AH +S D +CGT + A + L SLP Sbjct: 78 LCAGDFVLLPRGDAHSISDAGLGGSPAGGDADRRPARWLCGTFTIGDPQASHLLGSLPAV 137 Query: 109 LFLAPVNHS--VEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT 166 + L L A + E +S G + ++I F +R W A + Sbjct: 138 IILRGSGGPDLEALEGLEVARRMIVLEMQSPSQGSAVMVARILDLIFIQIMRTWAAGADV 197 Query: 167 EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVL 226 E N L+ P++G + + PG WTVE LA ++SR+SFA F + G P L Sbjct: 198 EPNWLAGAFDPQIGLALSAIHRDPGREWTVEELARACNLSRSSFAARFVERVGKPPATYL 257 Query: 227 TKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +RL A + LPV +AE+VGYASE++F +AF +G P +R +R Sbjct: 258 AHVRLDAATTLLRDTFLPVTQVAETVGYASEAAFSRAFKNRYGTPPARWRRDIR 311 >UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=Rhizobiales RepID=C6B202_RHILS Length = 303 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 28/299 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS + L + +G W A +++ A+ +GA + +P F+ Sbjct: 2 IDPLSDVFSLLDIESARCTRFEVGGQWAFRFPAKP--ALKFVAVLRGACSIVLPGEPPFS 59 Query: 61 LRPGNVVLLPQNSAHRLSHV----------------------DNESTCIVCGTLRLQHS- 97 L G+ LL A+ +++ ++ T ++ GT + Sbjct: 60 LVAGDTFLLANAPAYVIANDLDREPEDGIAFFDWEHSDIARHGSDETALIGGTFVIGGGN 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 AR L +LP + + + + L + L E + G + ++ A+ Sbjct: 120 ARLLLDALPPFIHIPASDRA--AALLSTTLATLDDELEAGQMGSTLMTRRMGDILLVQAL 177 Query: 158 REWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R ++ + E + L +P++GA I + PGH WTVE+LA+ MSR++FAQ F++ Sbjct: 178 RAYVGRKGAAETGWIGALTNPQIGAAISLIHNSPGHRWTVEALATRIGMSRSAFAQRFKE 237 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + G PL +T+ R+ A + RE + V +A ++GY+SES+F AF R FG P Y Sbjct: 238 LVGVAPLDYVTRWRMHRAREALRREDVSVAGLAAALGYSSESAFGNAFKRVFGRAPKRY 296 >UniRef50_C1RHR4 DNA-binding domain-containing protein, AraC-type n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RHR4_9CELL Length = 335 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 33/311 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + L G W + + +H +T G + +P + L Sbjct: 25 DLVGESLHRLRVAGVFYCRTEAAGVWSVD-MPAFGDCLTFHVVTAGEVHVAVPGADPVLL 83 Query: 62 RPGNVVLLPQNSAHRLSH----------------------------VDNESTCIVCGTLR 93 R G++ L+P H L+ D ++CG L Sbjct: 84 RAGDLALVPHGRGHVLASDLAAPSLGRVDLLPQDYLTETYSVLRHDGDGPRASLLCGVLS 143 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + A L L + P W+ + + E PG +A+ +++ Sbjct: 144 VDGPAARPLLDLLPAVVDVP---GESAPWVSRTLELMTAELAHLRPGGEAVLTRLADVVV 200 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 AVR W+ + L L P +GA + + P H WT+ +LA ++ MSR++FA Sbjct: 201 IQAVRAWLDAQDPATGWLGGLRDPYVGAALAAVHRDPAHPWTLAALARVSAMSRSAFAAR 260 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F V G + +T R+++A +R + +A +VGY S + F + F R G +PG Sbjct: 261 FTQVVGVPVMQYVTSWRMRVATDRLARGDA-LAHVATAVGYESTAGFSRTFSRVTGRSPG 319 Query: 274 EYRERVRQLAP 284 R L P Sbjct: 320 SVRRIAGSLGP 330 >UniRef50_UPI0001B53B77 AraC family transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B53B77 Length = 317 Score = 230 bits (587), Expect = 4e-59, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 129/310 (41%), Gaps = 34/310 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + +++ G + +L + W + + ++ I + + G+ L G+ L Sbjct: 3 DVVGQIVAALRRGGVVYGRALLSAPWGIAFESRSIATI--YVVIAGSYVLVPDGGQALHL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNE----------------------------STCIVCGTLR 93 G+V LLP + H ++ T +VCG Sbjct: 61 AQGDVALLPSGAGHVVADAPGRPAPTVRELFGADLEELSATDLVIEGEGLETVLVCGAYL 120 Query: 94 LQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 L+ ++ F+ SLP+ + + + L A+ L E A G A+ + + Sbjct: 121 LEPVPQHPFVDSLPDVVHVT--ASQMRGTSLAAAVHLLTTEVDQAGRGTPAVVASLLDLL 178 Query: 153 FTLAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 FT +R W + Q + L P +G + + + PG WTVE+LA + RA F+ Sbjct: 179 FTYTLRTWFLGQSDQLVGWAHALHDPAVGPALALLHDDPGKPWTVETLAHAVGVPRARFS 238 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F +G TP+ L R+ +AA++ + P+ IA VGY SE +F +AF R G Sbjct: 239 RRFTSTTGHTPMEYLGIWRMTVAARLLREDQAPLRQIARKVGYDSEFAFARAFKRIVGQA 298 Query: 272 PGEYRERVRQ 281 PG YR + Sbjct: 299 PGRYRATHHR 308 >UniRef50_B1M711 Transcriptional regulator, AraC family n=4 Tax=Rhizobiales RepID=B1M711_METRJ Length = 327 Score = 230 bits (586), Expect = 5e-59, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 121/304 (39%), Gaps = 33/304 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L GT+ + LG W L ++ +H ++ G+A L + F Sbjct: 14 MDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYAL--FHYVSHGSATLALDQEREFH 71 Query: 61 LRPGNVVLLPQNSAH--------------------------RLSHVDNESTCIVCGTLRL 94 + G++V++ + H R + ++CG + Sbjct: 72 MSAGDLVVISRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPPCSTMICGKFTV 131 Query: 95 -QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 Q S L LP L L + + WL + + ES PG D + S++ F Sbjct: 132 AQPSRSSLLELLPPVLHLKS---TEDGAWLELILRRMVHESAQPRPGQDVVLSRLTEVLF 188 Query: 154 TLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W+ + E L + P +G ++ + + +WT++ L + R++F+ Sbjct: 189 VEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVGLGRSAFSA 248 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G + L R+ AA + + IA VGY S ++F K F R G +P Sbjct: 249 RFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLFHRHHGLSP 308 Query: 273 GEYR 276 G YR Sbjct: 309 GRYR 312 >UniRef50_Q01Y24 Transcriptional regulator, AraC family n=2 Tax=Acidobacteria RepID=Q01Y24_SOLUE Length = 335 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 41/315 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL-----------PHGAGELSVIRWHA--LTQG 47 +D ++ + + W L P G + H L++G Sbjct: 5 LDPITDIFRTMHVTAFGQHRLEATAPWGLMQEKRTEEKLTPSGQIDSPTDLAHYAMLSRG 64 Query: 48 AAKLEMPT-GEIFTLRPGNVVLL-----------PQNSAHR--------------LSHVD 81 L + + L G+ L+ P+ Sbjct: 65 NCWLSVGGIPDPIPLTGGDCFLVDRDTSIVMRDSPRTRPRSTFGEVAAKADGNVAHHGGG 124 Query: 82 NESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 T IVCG++ ++ +T L + L + L + + L E PG Sbjct: 125 GAPTTIVCGSMSFDRASLRPITQLLPSFILIRAEQARTLA-LHDTMRALSSEMAEQAPGS 183 Query: 142 DALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 + + +++ F +R IA K L + P++G + + + WTVESLA Sbjct: 184 EIVANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVESLA 243 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 A MSR++FA F+++ G TPL +T+ R+Q A Q+ + ++ +A SVGY S ++F Sbjct: 244 EAAGMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESGAAF 303 Query: 261 HKAFVREFGCTPGEY 275 KAF R G PGEY Sbjct: 304 SKAFKRVVGINPGEY 318 >UniRef50_Q0K088 Transcriptional regulator (Transcriptional regulator, arac-family) n=4 Tax=Proteobacteria RepID=Q0K088_RALEH Length = 310 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 35/304 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS ++ L P+ K+ W + + + + A+ +G+ +L + TL Sbjct: 15 DPLSEVISLLQPRAVFSKSISGAGRWGVRY--ADFGQPSFCAVLEGSCRLAVDGQHALTL 72 Query: 62 RPGNVVLLPQNSAHRLSH--------------------------VDNESTCIVCGTLRLQ 95 G+ VLLP LS ++ G Sbjct: 73 ETGDFVLLPATPGFTLSGFEPVAPERIDPKVTPAPMGEVRHGRRGGRPDVRLLGGYFVFD 132 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 S L SL L H L + + +ES G + + +++ Sbjct: 133 SSNAALLVSLLPALV-----HVRGAERLSAIVRLVSEESGERRSGRELVLTRLVEVLLIE 187 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 A+R + + +L L RL + ++QM P +WTV LA A +SR++F + F Sbjct: 188 ALRS-TSGEDAPPGLLRGLTDTRLASAMRQMHADPARSWTVAQLARKAALSRSTFFERFT 246 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G P+ L R+ +A + R + + +AE VGY S ++F AF R G P Y Sbjct: 247 RAVGMPPMEYLIAWRMAVAKDLLRRHDIGIAEVAERVGYGSATTFSTAFSRHVGQPPSLY 306 Query: 276 -RER 278 R+R Sbjct: 307 ARKR 310 >UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGT9_9NEIS Length = 316 Score = 229 bits (584), Expect = 8e-59, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 M L L+ L G+ID C DW + H + + H +T G L++ + Sbjct: 1 MTILDNLITLAQITGSIDVQCSFNGDWYVRHSSQRTQGVV-HIVTHGTGYLKLDNEAQAR 59 Query: 60 TLRPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTL 92 L+ G+++ P+N+AH LS + + C Sbjct: 60 QLQAGDIIFFPRNAAHTLSSQIGCNNSQHAPSISQQGSITHKQTSASANAAQLNLYCAHF 119 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + L LPE + L ++ + + LQ E A + + Sbjct: 120 AYETH-NSLLQGLPEIIILN-----TPHSTTQAIVSLLQYEISQNEHSTTAAINALSTVL 173 Query: 153 FTLAVREWIAQVNTE---KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 +R +++Q + +L+ RL +V+Q + + PG W VE LA +A +SRA Sbjct: 174 LVHILRTYLSQNEHQAPLTGVLNGWRDRRLRSVVQAVTQEPGRDWRVEELAELAKLSRAQ 233 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 +LFR T+P A ++ +RLQ AA + ++ +A GY SE+ F K F + +G Sbjct: 234 LMRLFRSQMQTSPHAFVSSMRLQKAAMLLRNSQSTILAVALESGYQSETHFGKVFKKHYG 293 Query: 270 CTPGEYRER 278 CTP +YR++ Sbjct: 294 CTPKQYRQQ 302 >UniRef50_A4JQL6 Transcriptional regulator, AraC family n=6 Tax=Burkholderia RepID=A4JQL6_BURVG Length = 345 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 142/319 (44%), Gaps = 36/319 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG---- 56 MD L RLL + G +D C GS W++ H + +H L +G A +E TG Sbjct: 20 MDMLDRLLSMMPVTGRLDVRCHFGSPWRIDHPESNERELPYHILLRGEAVVEGETGGADE 79 Query: 57 EIFTLRPGNVVLLPQNSAHRLSHVDNESTC-----------------------IVCGTLR 93 ++ G++V+ P SAHRL ++ ++CG Sbjct: 80 PTLRMKAGDIVVFPSGSAHRLHDGSGDAPRAVQERHRNGLTITTNGGADASIDVLCGRFV 139 Query: 94 LQHSARYFLTS-LPETLFLAPV--------NHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 L + L LP L ++ V + + L I +++E+ G A+ Sbjct: 140 LPAVPQQLLRDHLPRRLIVSSVAAGDGQTRDAAFAATRLARVIELMREEALEQRAGSAAV 199 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + F L +R + + +L+L RL + M + P WT+ LA H Sbjct: 200 VDHLSGALFALTLRSASESGHAPRGLLALAQRHRLQPALTAMFDEPEKPWTLAQLAERCH 259 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSRA+FA+ F + + VLT++R+ +A + ++ T+ V I E+VGY SE++F + F Sbjct: 260 MSRATFARHFDEAISRSATDVLTEIRMALAGRKLAQTTMSVAEIGETVGYRSEAAFQRVF 319 Query: 265 VREFGCTPGEYRERVRQLA 283 R+ G TP ++R + ++A Sbjct: 320 KRQVGMTPAKWRMQATRIA 338 >UniRef50_Q07PU3 Transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07PU3_RHOP5 Length = 344 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 42/317 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHG----------AGELSVIRWHALTQGAAKL 51 DALS +L + + + W G VI++H + +G+ Sbjct: 4 DALSEVLRAVRLSSAMFFSLDVRGPWAAAAPASSECAPLVLPGAQHVIQYHVMVEGSCFG 63 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSH-----------------------------VDN 82 L G+++ PQ +AH LS D Sbjct: 64 AWADAPGVRLDEGDIIAFPQGAAHTLSSEPGMRAAPDLGMYRQAGAGVLPHCVRIGEGDR 123 Query: 83 ESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 I+CG + + +LP L L + L I + E G Sbjct: 124 TDARILCGFMGCDARPFNPLIAALPPVLHLRRSAQPGHCS-LPHLISAARAEVEGRRVGG 182 Query: 142 DALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 + + +++ F A+R ++ ++ E+ L+ L +G V+ + P WT++SLA Sbjct: 183 EGVFARLGELLFVEAIRCYVETLDPEQTGWLAGLKDRHVGQVLNLIHADPASDWTLDSLA 242 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 A ++R+S A+ F + G P+ LT+ R+Q+AA + P+ IAE+VGY SE+ F Sbjct: 243 REAGLARSSLAERFTQLIGLPPMQYLTRWRMQMAANLLVAGREPIGRIAEAVGYDSEAGF 302 Query: 261 HKAFVREFGCTPGEYRE 277 +AF R G P +R+ Sbjct: 303 SRAFRRMVGSPPASWRK 319 >UniRef50_Q15UL8 Transcriptional regulator, AraC family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15UL8_PSEA6 Length = 316 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 128/320 (40%), Gaps = 44/320 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT----- 55 MD L++L + N W + + +H ++ G L +P+ Sbjct: 1 MDVLNQLFATFKVSANVFHNGQYCGSWAI--NTSGTHYMNFHVVSHGTCFLTLPSVKRES 58 Query: 56 --------------GEIFTLRPGNVVLLPQNSAHRLSH-------------------VDN 82 + L G+VVL P++S H +S + Sbjct: 59 EHEGDKHSECDQKQNTVIELVQGDVVLFPRDSEHVISGDLGSSAVVNTAASQNYASGIHP 118 Query: 83 ESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 +T +VCG H +T LP + + S + L + L ES+ G Sbjct: 119 SATGLVCGYFSHHHPLVASVTKHLPSVIIIKHQTVSTSASGLNYLLDALLDESKQPNKGS 178 Query: 142 DALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + +I + RE + + +L+ HP+LGA + + P WTVE LA Sbjct: 179 ALIMGRIAEAILAIIFREHL---PADNGMLAATAHPKLGAAMAAIHSEPDKKWTVEMLAQ 235 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 MSRA F +LF+ V +P+ +T+ RL +A +M + E + + A + GY +ESSF Sbjct: 236 RCFMSRAGFNELFKSVLHQSPMEYVTQWRLGLAYRMLADENVTTLHAALASGYENESSFS 295 Query: 262 KAFVREFGCTPGEYRERVRQ 281 KAF R G +PG R Q Sbjct: 296 KAFKRVLGVSPGAVRALSEQ 315 >UniRef50_UPI0001C310C0 transcriptional regulator, AraC family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C0 Length = 321 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 132/306 (43%), Gaps = 34/306 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ LL +G + N + W + ++ + +HA+ GA +E+ E Sbjct: 1 MDVLADLLARAHARGAVFSNRRFAAPWGVEF--QDVFPLTFHAVLGGAMWVELEGEEPLQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHV---------------------------DNESTCIVCGTLR 93 L G+++L+ + +R H D +T ++CG Sbjct: 59 LFGGDLLLVRTGAPYRFVHAPGAPAVSMRRLLDGEPEQQPQPQPPQHDGPATQLLCGAYT 118 Query: 94 LQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 L+ S L SLP LAP+ LR A+ L E + PG + ++ Sbjct: 119 LEGSVCDSLLASLPS---LAPIRGGSVGGPLRTALGLLGDEVATEEPGQQTVLDRLLDLL 175 Query: 153 FTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 ++R W + + + L P G ++ + P H WTV LA++A +SRA+FA Sbjct: 176 LVYSLRAWFTRPEADVPGWYAALEDPAAGPALRAIHSDPAHQWTVAELAALAGLSRAAFA 235 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G PLA LT+ R+ +AA R + +A+ VGY SE + AF R +G Sbjct: 236 RRFSERVGEAPLAYLTRWRMSLAAGALLRPGATLAAVAQEVGYGSEFALSNAFRRTYGEA 295 Query: 272 PGEYRE 277 PG +R Sbjct: 296 PGRWRR 301 >UniRef50_D2PPT2 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D2PPT2_9ACTO Length = 315 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 82/310 (26%), Positives = 127/310 (40%), Gaps = 35/310 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L + +GT+ W L E + ++A+T G A L +P E Sbjct: 1 MDLLADVLAVAGVRGTLGARIEAADPWGLTWRGVEDAA--FYAVTAGTAWLSVPGREPLQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-----------ESTCIVCGTLRLQHS------------ 97 L PG+VVLLP H +S E G +R Sbjct: 59 LLPGDVVLLPTGPDHAISSAPGVWAPDCDPSAAEHARRTGGVIRFGEGEVRTHLLVAAYA 118 Query: 98 -----ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + LT LPE + L + L + + L +E + ++ Sbjct: 119 HDPAVSTQMLTLLPEVVHLRGDHGG---TCLDDTLRVLARELAYPQAASSVVIDKLADIL 175 Query: 153 FTLAVREWIAQ--VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 +R W+A T+ + L++L P L + ++ + P WT E LAS +SR++ Sbjct: 176 LIQLLRVWLAGRPEETKHSWLAVLDDPLLTEALTKLHQDPARPWTTELLASELTISRSTL 235 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 A+ F V G +P + LT+ R+ +AA+ + IA SVGY S +F +AF R G Sbjct: 236 ARRFLAVIGQSPGSYLTQWRMDLAARRLRDSDDTLESIARSVGYTSVYAFSRAFSRARGV 295 Query: 271 TPGEYRERVR 280 PG YR R Sbjct: 296 PPGRYRITAR 305 >UniRef50_A7HC12 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC12_ANADF Length = 345 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 121/322 (37%), Gaps = 40/322 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHG----------AGELSVIRWHALTQGAAK 50 +D LS L + G + W + G + H L +G Sbjct: 23 LDVLSDALRVVRASGALLLRGEFTGSWAVATPDSSAIARIVCPGGARLAIMHLLAEGDCW 82 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLSHVD---------------------------NE 83 + +P E L G +VL P+ AH L D E Sbjct: 83 IALPGRERVRLATGELVLFPRGDAHLLGSGDHAAVVPVSALLPPAPWTELPVLRHGGGGE 142 Query: 84 STCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 IVC LR FL LP L L S W+ +I ++ ES PG Sbjct: 143 RARIVCCYLRCDDLLFTPFLEPLPPVLHLRADGGSTH-EWVSASIRYVIAESTRGGPGSG 201 Query: 143 ALCSQICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 AL ++ F A+R + + T L+ L + +Q PG AWTVE +A Sbjct: 202 ALVGKLTELLFIEALRREMCSLPETSVGWLAALRDEYVSRALQAFHARPGRAWTVEGVAR 261 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 A +SR++ F+ V TP+ LT RLQ+AA + V IA +VGY SE + Sbjct: 262 EAGLSRSALVARFQRVLAKTPMQYLTTWRLQLAANRLLATSETVAAIAHAVGYGSEVALS 321 Query: 262 KAFVREFGCTPGEYRERVRQLA 283 AF R G +P +R R+ Sbjct: 322 HAFKRVTGVSPAAWRRSHRRSG 343 >UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Proteus mirabilis RepID=C2LP41_PROMI Length = 308 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 26/305 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+LL L+ Q +D C + + LPH + +H + G +++ Sbjct: 1 MDTLSQLLYLSQGQLQLDVFCQMKGHFSLPHVSSVEHETIFHLVLSGQCYVQIEKSAPIV 60 Query: 61 LRPGNVVLLPQNSAHRL--------------------------SHVDNESTCIVCGTLRL 94 L G ++L + +H L S + ++CG + Sbjct: 61 LSEGTFLMLNRRQSHTLWSGERDIEPLPFLHKNNGFLPVKYTKSEDQTQHVDLLCGRMTY 120 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + L + + +A + L L++E+ +A G A+ + + T F Sbjct: 121 AKGSGLLLLNGFPDMVVANLVEMPGLTVLNLFSQLLREEAINANQGAAAILNGLAQTLFA 180 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R + + + + L+LL PRL V ML P WT++SLA++A MSRA+F + F Sbjct: 181 FALRVYGQKPDINSSWLALLAEPRLSRVFNSMLNEPQKGWTLDSLANVASMSRATFVRQF 240 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + + TTP VL +R+ A + + + IAE VGY SE++F KAF F C PG+ Sbjct: 241 KATANTTPGEVLQSIRMLKALSLLQQNKYTLSDIAERVGYQSEAAFSKAFKSVFNCRPGQ 300 Query: 275 YRERV 279 ++++ Sbjct: 301 WKKQQ 305 >UniRef50_B1G656 Transcriptional regulator, AraC family n=1 Tax=Burkholderia graminis C4D1M RepID=B1G656_9BURK Length = 327 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 131/296 (44%), Gaps = 24/296 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS +L L +G + + P AG R+H + GA +L+ + TL Sbjct: 25 DVLSDVLDLIRLRGESIEIYETVEAQRKPFDAGR---ARFHFIQDGAFRLDAIAIDTTTL 81 Query: 62 RPGNVVLLPQNSAHRLSHVDNEST-------------------CIVCGTLRLQH-SARYF 101 G++VLLP+ AH LS + + ++ G+ + SA Sbjct: 82 VAGDLVLLPKGCAHVLSAIHARDSLPGSPSRPDECRSFAEKPFRVLTGSFVFESASAGSL 141 Query: 102 LTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI 161 + LP+ + L + S W + F++ E+ PG + S++ ++REW+ Sbjct: 142 IAGLPDVIHLR-ADASGTPEWQHAILRFVRLEASEPSPGAALMISRLIDLLVIRSLREWV 200 Query: 162 AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTT 221 A+ L L RLG + M E P H W + +LA IA MSR+ FA F ++ G Sbjct: 201 AKSPAHSGWLRGLGDARLGRALAAMHEDPAHEWKLGALAKIATMSRSHFADRFTEIVGEP 260 Query: 222 PLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 PL L + RL +AA + + + A GY S+SSF +AF FG +PG R Sbjct: 261 PLRYLARWRLSLAADLLRNGRVRISEAASVAGYQSDSSFSRAFKAHFGYSPGAIRH 316 >UniRef50_A9AD06 AraC family transcriptional regulator n=5 Tax=Burkholderia cepacia complex RepID=A9AD06_BURM1 Length = 320 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 117/313 (37%), Gaps = 33/313 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS +L + L + W + A ++ + L + Sbjct: 3 IDLLSDVLTDLRADAVVTGRFTLSAPWAIRKPA--VAGAPFRTCAGSPFYLSVAGAAPVH 60 Query: 61 LRPGNVVLLPQNSAHRLSH-------------------------------VDNESTCIVC 89 + PG+ VLLP H ++ ++ + Sbjct: 61 VEPGDFVLLPHGDEHVMASSLDEPPVPFDTLMADKGIRPRFDTPLEFAAGGGGATSELYT 120 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G + + R L S+ TL + + WL + +ES + PG +++ Sbjct: 121 GIVVYRDIVRSPLFSVLPTLIHVRAHDAAVAPWLASTLQSFIEESMACQPGWAVAATRLA 180 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 F +R + L L P++G + M P W + SLA+ A MSR+ Sbjct: 181 DVLFVQLLRAHLQSSANHTGWLRGLTDPQIGRAMALMHRDPRRNWQLASLAAEAGMSRSR 240 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F F ++ G TP+ LT R+ +A+ ++ L ++ IAE VGY SE +F +AF R G Sbjct: 241 FCARFAELVGETPIGHLTAYRMYLASGELAQGRLRLIEIAERVGYTSEKAFARAFHRWSG 300 Query: 270 CTPGEYRERVRQL 282 P Y + L Sbjct: 301 MAPRRYARNAQDL 313 >UniRef50_B7V4F0 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V4F0_PSEA8 Length = 303 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 144/302 (47%), Gaps = 26/302 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L RL+ L QG +D+ C L W L H +H + G E G Sbjct: 1 MDPLDRLIQLANLQGRLDQRCQLQGSWALEHPQAVPGEATFHIVMAGTCYCEFLDGGRLD 60 Query: 61 LRPGNVVLLPQNSAHRLSH-----------------------VDNESTCIVCGTLRLQHS 97 L PG+++LLP+ + H L E+ ++CG+ R H+ Sbjct: 61 LHPGDLILLPRGTPHLLRSDSPAQPCEPTVEHRGSIPLYQLNGPGEALDMLCGSYRY-HA 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 +LPE L + ++ S + LR I +++E+ S G ++ + F LA+ Sbjct: 120 GASLFGALPERLLV-HMDESTQQP-LRALIGLMREEAESTRSGARSIIDALATALFALAL 177 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R ++ + + LL RLG ++ MLE P HAWT+E LA A MSRASF + F + Sbjct: 178 RAYLDRQPLGDGLFGLLGDARLGRALRAMLERPEHAWTLEQLAQQAAMSRASFVRAFSAL 237 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 GT+P +LT++R++ A + + ++ IA GY SE++F + F + FG +PG +R Sbjct: 238 GGTSPWNLLTRIRMEKARGLLRQTQKSLLDIAAETGYQSEAAFSRNFRQAFGESPGRFRR 297 Query: 278 RV 279 + Sbjct: 298 QA 299 >UniRef50_Q88IN9 Transcriptional regulator, AraC family n=4 Tax=Pseudomonas RepID=Q88IN9_PSEPK Length = 306 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 8/278 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL + L G+ SV H L G + G+ Sbjct: 34 MDRLSTLLKHFNLHASAFHQGGFCGTTHL----GQHSVGHAHLLRSGRLAFKDKRGQRIE 89 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 L ++L + H L D + +VC TL+ A LT + P+ E Sbjct: 90 LTEPTLILAVRPQEHHLLATDADEAELVCATLQFDGGANNPLTLALPDFIIKPLG---EL 146 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L + +L +E+ G D + +++ +R IA + +++ L + +L Sbjct: 147 QGLDGTLDWLFEEAFGDECGRDVILNRLFELMIIQLLRHLIASRSIASGMMAGLANAQLS 206 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + + P W+V LA+++ MSRASFA FR++ G TP L R+ + + Sbjct: 207 RALVGIHDEPQRNWSVAELANLSGMSRASFASHFREIVGITPADYLANWRISLTQKRLRE 266 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 P+ +IA+ VGY S S+ + F R+ G +P ++ ++ Sbjct: 267 GR-PIALIADEVGYESPSALARTFRRKVGASPKQWLQQ 303 >UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y4B2_CROTZ Length = 312 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 26/306 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS+L+ L AP+ +ID +C W H I WHA+ G A+L + GE+ T Sbjct: 9 MDSLSQLIALLAPESSIDLHCRFAGRWASDHAQSPAGHIPWHAILSGNARLVL-NGEVIT 67 Query: 61 LRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQH 96 + G++ LLP + HRL D ++CG R Sbjct: 68 AQAGDIFLLPHGAPHRLESHKQDGARAPAQRHENGVITEVVTEGDEAPLVMLCGEFRTGV 127 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 S + P +A + L + L ES S PG A+ ++ +T TL Sbjct: 128 SGALLFSGQPAVQRIA-TGARDDCRSLTALLTMLSDESLSGRPGAAAIVRELSSTLLTLV 186 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R +++ N +L LL RL + +L P H WT+ES+A+ +SR++FA+ F Sbjct: 187 LRALLSEENAAPGMLPLLADKRLAPAVSAVLANPEHPWTLESMAARCFLSRSTFARHFAS 246 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TP L ++R+ AA++ RE + +AE+ GY ++++F KAF +G TPG++R Sbjct: 247 RYPLTPQGWLNQVRMARAARLLEREQRAIGRVAEACGYLTQAAFSKAFKSAWGVTPGQFR 306 Query: 277 ERVRQL 282 ++ ++ Sbjct: 307 QQHARI 312 >UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A7MK74_ENTS8 Length = 304 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 26/303 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS+L+ L AP+ ++D +C WQ H + I WHA+ G+A+L + GE+ Sbjct: 1 MDSLSQLIALLAPESSVDLHCRFAGRWQSDHAQSPVGHIPWHAILSGSARLVL-NGEVIH 59 Query: 61 LRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQH 96 R G++ LLPQ +AHRL D+ ++CG R Sbjct: 60 ARAGDIFLLPQGAAHRLESHKQDGVAARVQRHDNAVVTEVVTEGDDTPLVMLCGEFRTGV 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 S + P +A + L + L ES S PG A+ ++ +T TL Sbjct: 120 SGALLFSGQPALQRIA-TGGREDCRSLAALLTMLSDESLSGRPGAAAIVRELSSTLLTLV 178 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R +A N + +L LL RL + +L P WT+ES+A+ +SRA+FA+ F Sbjct: 179 LRALLADENGAQGMLPLLADKRLAPAVSAVLTNPEQPWTLESMAARCFLSRATFARHFAS 238 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TP A L ++R+ AA++ RE + +AE+ GY ++++F KAF +G TPG++R Sbjct: 239 RYPLTPQAWLNQVRMARAARLLEREQDAIGRVAEACGYLTQAAFSKAFKNAWGVTPGQFR 298 Query: 277 ERV 279 ++ Sbjct: 299 QQH 301 >UniRef50_A9F1M5 Putative araC-like transcription regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F1M5_SORC5 Length = 373 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 121/308 (39%), Gaps = 33/308 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 MD LS ++ + L + W L AG + H +T+G+ LE+ G Sbjct: 31 MDLLSEIVGELRLESVSYWRLELTAPWALRFPAGGRGI---HIVTRGSCWLEVDGGRAPA 87 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNE--------------------------STCIVCGTLR 93 + G++V++P H L T IVCG R Sbjct: 88 AVASGDLVVMPSGRGHVLRDARGPRKASLIEELVRGASPGRAIEHGGAGLPTTIVCGQFR 147 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 L +LP L L +++ + E + G + +++ Sbjct: 148 FGTLGHPALEALPPVLHLR--GDERIGPFIQAHTQCIAAEVSAPAEGAAIVTARLSDVLL 205 Query: 154 TLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 A+R ++ V + + L L P++G + +M P W+V +LA A MSRA+F+ Sbjct: 206 VQALRAYLRDVPADERGWLRGLADPQIGRALARMHRSPELDWSVPALAQEAGMSRAAFSA 265 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G +P L R+ A + V +A +VGY SE++F AF R G +P Sbjct: 266 RFSEQMGVSPGKYLADWRMYRAKVLLRSGPALVAEVAAAVGYRSEAAFSFAFKRLVGSSP 325 Query: 273 GEYRERVR 280 YR+ R Sbjct: 326 SAYRDDHR 333 >UniRef50_C1ACW1 AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACW1_GEMAT Length = 335 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 125/324 (38%), Gaps = 46/324 (14%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE---- 57 D +S +L + + W + + ++ L +G+A LE+ G+ Sbjct: 5 DVVSDILRAVRLSARVFGRFEASAPWAMRVPGDDY--FAFYLLARGSAWLELTGGDTAIA 62 Query: 58 IFTLRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVC 89 L G+VVLLP +H L + +T V Sbjct: 63 PVALSAGDVVLLPHGGSHVLRDAEHSMAVAHEVGANSCPRPTTMETIRMGGGGTATTFVA 122 Query: 90 GTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 G R R L +LP L +A + + L I + ES + PG L +++ Sbjct: 123 GAFRFGAEGRGILLETLPPVLHVAAGDADMGAA-LAATIQLILAESANPAPGGALLSTRL 181 Query: 149 CATFFTLAVREW----------IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 A+R + L L P +GA ++ M P WTV S Sbjct: 182 AEILLVQALRVHTRRTYEANAAASDHTAHAQGLCALADPHIGAALRLMHARPADTWTVAS 241 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA SR++FA F ++ G +PL LT+ R+ AA+ + V IA+ VGY + + Sbjct: 242 LAHEVGQSRSAFAARFAELVGESPLQYLTRWRMTQAAEWLRDRSDSVPAIAQRVGYGNAA 301 Query: 259 SFHKAFVREFGCTPGEYRERVRQL 282 +F KAF R G PG YR RQ Sbjct: 302 AFMKAFTRVQGQGPGAYRRAHRQR 325 >UniRef50_C1F8R2 Transcriptional regulator, AraC family n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8R2_ACIC5 Length = 327 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 118/306 (38%), Gaps = 33/306 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI-FT 60 D LS +L L P+G + G +W G + + A+ G L + ++ Sbjct: 15 DPLSDVLSLLKPRGYMTGGIDAGGEWC--FGFEPSAGFKCFAVISGCCWLRLDAEDVTLR 72 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 L G+ V+L +RL+ + Sbjct: 73 LEAGDFVVLTHEGGYRLASDLDLPSMEIMSVIKEPLNGRILTWQGGGGCLGLSAIFSFGG 132 Query: 97 SARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 L+ LP + + + + L+ + + + R PG + + Sbjct: 133 EHASILSEVLPPVIHI---RNPEDRAVLQWYVERMMKVVREPRPGSVLMGEYLAQMMLVE 189 Query: 156 AVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 ++ +A + L L ++ A I M P WTV+ LA A MSR++FAQ F Sbjct: 190 VLQLHVANSASGAVGWLFALADRQVRAAIAAMHRAPAQRWTVQELAEQAGMSRSAFAQRF 249 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 ++ G ++ LT+ R+ +AA V IA S+GY SES+F AF RE GC+P + Sbjct: 250 KERVGLPAMSYLTRWRMMLAADQLMHSKDSVAEIAFSLGYESESAFGFAFKREMGCSPRQ 309 Query: 275 Y-RERV 279 Y R R Sbjct: 310 YGRNRA 315 >UniRef50_C7Q710 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q710_CATAD Length = 319 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 134/308 (43%), Gaps = 35/308 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS L + + W L + +S +H + +G +L P GE Sbjct: 1 MDILSDTLEVLRTGRPMVTRTDAHGPWALKY--QPISGASFHVVMEGRCRLLRPEGEPLA 58 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 L PG++V L + S H + D T +VCG Sbjct: 59 LGPGDIVFLRRGSGHTMCDPDTPHPEPMDFAPHRLDDSSPIGQFTVEGPGPRTVLVCGAY 118 Query: 93 RLQHSARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 ++ R+ L T++PE + L Y LR AI L E RS PG DA+ + + Sbjct: 119 KIDADHRHPLFTNMPEIIHLPAA--PGRYPVLRSAIDQLCAEFRSPQPGSDAIVTALVDL 176 Query: 152 FFTLAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 +R W A++ ++ + L + ++ + + PG WTVESLA+ +SRA+ Sbjct: 177 LLLHILRSWYAELPKDQTCGWAAALTDHAIAPALKAIHDAPGDPWTVESLAARTGLSRAA 236 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 FA+ F V G PL LT R+ AA++ V IA+ GY SE +F KAF R FG Sbjct: 237 FARRFAAVVGVPPLTYLTNWRMATAARLLRESPSTVNTIAQRTGYTSEFAFAKAFKRHFG 296 Query: 270 CTPGEYRE 277 PG YR+ Sbjct: 297 SPPGSYRK 304 >UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Proteobacteria RepID=A9AQB1_BURM1 Length = 317 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 132/309 (42%), Gaps = 31/309 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D+LS+LL + G ++ C GS WQL I +H + G A LE G I Sbjct: 5 DSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTGSITE 64 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 L G++VLLP +AH L E ++CG ++ Sbjct: 65 LASGDIVLLPHGAAHVLHDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRFHIRP 124 Query: 97 SARYFLTS-LPETLFLA-----PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA 150 + LP TL + + N L + ++ S PG A + + + Sbjct: 125 PHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASLVELMRMVSVGDKPGGYATLNALTS 184 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 FTL +R +L+L HPRL I M P W++ LA + +MSRA+F Sbjct: 185 ALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMSRATF 244 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F D G + +LT +R+ +AA + + +AES+GY S ++F + F + G Sbjct: 245 MRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTDKMGM 304 Query: 271 TPGEYRERV 279 TPG++R R Sbjct: 305 TPGQWRRRT 313 >UniRef50_A9M194 AraC-family transcriptional regulator n=29 Tax=Neisseria RepID=A9M194_NEIM0 Length = 325 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 137/307 (44%), Gaps = 33/307 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IF 59 MD L +L+ G++D C+LG W + H + + H +T G L + Sbjct: 25 MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGLV-HIVTSGNGYLCIDGETSPR 83 Query: 60 TLRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQH 96 + G++V P+ H LSH + + C R Sbjct: 84 PVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQCGNGQDMSLFCARFRYDT 143 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 A + LPET+FL + + L+ + LQ ES + G ++ + + + L Sbjct: 144 HAD-LMNGLPETVFLN-----IAHPSLQYVVSMLQLESEKPLTGTVSVVNALSSVLLVLI 197 Query: 157 VREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R ++ Q + +L RLG +IQ++++ P W V+ + + A+MSRA + F Sbjct: 198 LRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKMVAAANMSRAQLMRRF 257 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G +P A + +RLQ A + + V+ +A SVG+ SE+ F KAF R++ +PG+ Sbjct: 258 KSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSETHFGKAFKRQYHVSPGQ 317 Query: 275 YRERVRQ 281 YR+ Q Sbjct: 318 YRKEGGQ 324 >UniRef50_P35319 Putative araC-like transcription regulator n=6 Tax=Streptomyces RepID=ARACL_STRLI Length = 304 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 118/303 (38%), Gaps = 30/303 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD L +L L + + + V G W + A V++++A+ +G +LE+ E Sbjct: 1 MDPLEDVLTLLKTRSHLSASLVAGGRWAVRFDA--PRVVKFNAVRRGTCQLEVDGIDEPI 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQH 96 L G+ LL + + L + ++ G Sbjct: 59 DLAEGDCYLLTRPRSFTLRSDPETAPVDGGVVFARAEDGIARAGQGDDVFLIGGGFSFGT 118 Query: 97 SAR-YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A+ L LP + + + ++ A+ + QE + + Sbjct: 119 RAQELLLDRLPPIVHVP--ADTPHAETVQWALTAIDQELTHRPMASTLIAEHLAVIMLVH 176 Query: 156 AVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R + + L+ L P + + + P +WTV LA A +SR++ A F Sbjct: 177 VLRLHLERAPHAVSGWLAGLADPVVATALTCLHRDPARSWTVADLADTAAVSRSTLAARF 236 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G PL LT+ R+++AA+ + IA SVGY SES+ AF R G PG+ Sbjct: 237 KATVGQGPLEYLTRWRIELAARQLREGNATLASIAHSVGYGSESALSVAFKRVLGMPPGD 296 Query: 275 YRE 277 YR+ Sbjct: 297 YRK 299 >UniRef50_D2S4Y3 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D2S4Y3_9ACTO Length = 359 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 121/300 (40%), Gaps = 33/300 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + +L +G + W + A E + +H +T G LE L Sbjct: 41 DPVGGVLADLRIRGVFYCRAEATAPWGVEMPALE-GCMSFHVVTAGRCVLEADGVRSV-L 98 Query: 62 RPGNVVLLPQNSAHRLSHVDNES----------------------------TCIVCGTLR 93 +PG++ L+P H L + +VCG ++ Sbjct: 99 QPGDLALVPHGRGHLLRSGPDAPIAGRADLLPQQYLAEHYSVLRLDGGGVPAGMVCGVVQ 158 Query: 94 LQH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + A + L LP L + WL + + ESR PG +A+ +++ Sbjct: 159 PERPGAAHLLDLLPPVLHVDG-RDGARGGWLPVLLGVIADESRHDRPGSEAVVTRLADVV 217 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 AVR W+ T L L P++G + Q+ PG AWT+ LA A MSR+SFA Sbjct: 218 VIQAVRAWLDTAATGPGWLRALRDPQVGRAVAQLHREPGTAWTLTRLAREARMSRSSFAA 277 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F +++G + + + R+ +A + V +A +GY SE++F +A+ R G P Sbjct: 278 RFTELAGEPAMHYVARWRMHLATVALAEGAR-VGELARQLGYESEAAFSRAYKRVVGVPP 336 >UniRef50_Q1MGU4 Putative AraC family transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MGU4_RHIL3 Length = 314 Score = 223 bits (568), Expect = 7e-57, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 31/299 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS++L + + G I L W L + + +G + G + Sbjct: 8 DLLSQILAMVSLHGEIVFTVELSQPWALRF---HPGAAYFFIVLEGGLTVVNDQGHALQV 64 Query: 62 RPGNVVLLPQNSAHRLSHVD---------------------------NESTCIVCGTLRL 94 G++++LP+ H LS + + T ++ G R Sbjct: 65 ATGDLIMLPRGLGHGLSDGECATEADLAALMAAQVTAEKLNVSHGGGGQQTKLIAGAFRF 124 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + ++ +L S ++ P W F+ +E++ PG + S++ Sbjct: 125 ESASVPWLVSALPSVIHIPKASGETAGWAEGLGYFMMKEAQEVYPGASIMISRLIDVLVI 184 Query: 155 LAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R W+ + L L R+ ++ + + P WTV LA +A +SR+ FA Sbjct: 185 SILRSWVRIERGGNVGWLGALGDARISRALKAIHDEPYRRWTVLDLARVAGLSRSGFAAR 244 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + PL+ ++ RL +A + + V +A VGY SE++F +AF +FG P Sbjct: 245 FTALVKEAPLSYHSRWRLTLALGLMRQPDAKVGSVARQVGYDSEAAFSRAFKAQFGFAP 303 >UniRef50_C0DSD5 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DSD5_EIKCO Length = 302 Score = 222 bits (567), Expect = 8e-57, Method: Composition-based stats. Identities = 81/303 (26%), Positives = 133/303 (43%), Gaps = 34/303 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L+ L +G ID C LG + L H E R H + G+ L + G+ Sbjct: 1 MDVLDKLIYLARLRGRIDVCCRLGGGFHLEHKT-EPETARLHWVVSGSGWLRVGNGQTVA 59 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 L G+ VLLP ++AH ++ ++CG R Sbjct: 60 LSTGDAVLLPYDTAHSIADSLEGLEQPAGKPQLHGNGVLAVKDCGGNRLQLLCGQYRYTR 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 A +L +PE L L +R+ + E+ G + + + Sbjct: 120 HAALWL-GMPECLLLP-------LPEMRQTASMMLDEAERLRYGSGTVVNALSQVMLVAV 171 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + Q +++ + LS L PRL ++Q +L P W++ +A +A +SRA +LF+ Sbjct: 172 LRRY-RQQSSDPSFLSQLEDPRLSGLLQAVLLAPQEDWSIARMAEMAKLSRAQLMRLFKS 230 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 V G +P + +RLQ AA + ++ IA G+ SES F++AF + FG TP +YR Sbjct: 231 VIGESPHRFVLSIRLQQAAVQLAASADTILRIALENGFVSESHFNRAFKQYFGQTPKQYR 290 Query: 277 ERV 279 + Sbjct: 291 VQQ 293 >UniRef50_A6VZ04 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZ04_MARMS Length = 328 Score = 222 bits (567), Expect = 8e-57, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 126/308 (40%), Gaps = 35/308 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGA-GELSVIRWHALTQGAAKLEMPTGEIFT 60 D ++ LL +G + + + + L G + + +H + QG+A L +G + Sbjct: 16 DMMNELLSGVRLKGLEYRRVEISAPFGLQFGEESDKRLAYFHFIGQGSAFLRTRSGAVHQ 75 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC-------------------------------IVC 89 L G+ VL+P H L D I Sbjct: 76 LACGDAVLMPCAGTHDLYSEDGVPLVSINAFEKVQLCDATSEISACNAEICRSKDNFIFS 135 Query: 90 GTLRLQHSARYFLTSL-PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 + + L L PE + + V + + + +E ++ PG + +++ Sbjct: 136 CAMEFDLGWLHPLAHLKPEVMHIETVPD--YDPQIPAILDVMTKELKAKRPGYSVILTRL 193 Query: 149 CATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 +R W+ + + P+L V+ + PG W+V +AS +SR+ Sbjct: 194 ADVVAAAILRRWVEIGCNVCGWVEAMRDPKLAQVLSALHHEPGRQWSVADMASEMGVSRS 253 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 FA+ F +++ +TP L LR+++A+Q S++ L + IA+ +GY S +SF +AF R Sbjct: 254 VFAERFTELTHSTPQQYLGNLRMRLASQWISQDNLSLDEIADRLGYGSAASFSRAFKRMT 313 Query: 269 GCTPGEYR 276 G +PG R Sbjct: 314 GISPGAVR 321 >UniRef50_C6AWA8 Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AWA8_RHILS Length = 348 Score = 222 bits (567), Expect = 9e-57, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 112/306 (36%), Gaps = 31/306 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD +L Q ++ + W + +G R + +G Sbjct: 24 MDPFDSVLSAMQLQSSLFVRMRAHAPWAMSFDSG--GQARLIVIAKGRGWFTQVGHPPVV 81 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 + G+ +++ Q L D E+ H Sbjct: 82 VEEGDCLIIKQGVMGILGDAPDRVAVPCWQIADHVTGETVSFGGDGEACEFFSTLFTFDH 141 Query: 97 SARYFLTSL-PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 +A L++L P+ + +A + + + + +E A G + ++ F Sbjct: 142 AAGEPLSALLPDVVHVA--MAKSDAGRMVSILEQIGKEEAQASLGGSYVVGRLLDVLFIQ 199 Query: 156 AVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R W + + N + L+ L H +L + ++ H WT+E LA MSR++FA LF Sbjct: 200 AIRSWASSEGNMPEGWLAGLTHRQLAQTLHRIHADLAHPWTLEQLARDVGMSRSTFAVLF 259 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + V G PL +T R+ A + + A GY ++ + +AF G PG+ Sbjct: 260 KSVVGVPPLTYITTWRIYRAK-LILAAGHSISAAAAQTGYGTDIALSRAFKAATGVAPGQ 318 Query: 275 YRERVR 280 +R R Sbjct: 319 WRRERR 324 >UniRef50_A6VY86 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VY86_MARMS Length = 308 Score = 222 bits (567), Expect = 9e-57, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 125/306 (40%), Gaps = 31/306 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 MD L+ ++ + + W + + I + L +G+A L P+ E Sbjct: 1 MDPLTDIITGLHIREANFTRMDASAPWGV--KSNGEHGINFVLLVRGSAILTTPSSSEAI 58 Query: 60 TLRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQ 95 L G+V LL ++ ++L T + + L Sbjct: 59 ALSSGDVFLLMGDAPYQLFDHEKSTLIDCVEVERLRRGNSIEIGGGGSVTSFISASFDLH 118 Query: 96 H-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 A+ L LPE L L + I L E+ S G +AL S++ F Sbjct: 119 AIEAQPLLHVLPELLHLKLDQRRSLA--FQSVIEMLALETESPGLGSEALVSRLFELLFV 176 Query: 155 LAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R + + + LS + L ++ M P WTVESLA A MSR+SFA Sbjct: 177 HAIRAYSMQPGGPTQGWLSAFANRNLRQALEAMHRAPEQVWTVESLAHTAGMSRSSFAAC 236 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F+ V G +PL LT+ R+ A ++ L + I+ VGY S S+F + FVR TPG Sbjct: 237 FKAVVGQSPLDYLTRWRIYCATRLLQHGNLTLSEISSQVGYESVSAFSRVFVRITAKTPG 296 Query: 274 EYRERV 279 +R+ + Sbjct: 297 AFRKSI 302 >UniRef50_C6WLA0 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WLA0_ACTMD Length = 295 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 123/286 (43%), Gaps = 25/286 (8%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPG 64 S ++ + + W+ + +H L +G+ L GE L G Sbjct: 2 SDVVEVARCGRAVHGRAGFDGPWRFRFST--CRGVGFHVLLRGSGWLVPERGEPLPLGVG 59 Query: 65 NVVLLPQNSAHRLS-------------------HVDNESTCIVCGTLRLQHSARY-FLTS 104 +VVL P+ H LS + + ++CG L S + L + Sbjct: 60 DVVLAPRRGGHVLSDLPVSEGAAPFSAVGASRGSGEGGAVDLLCGEYPLDGSRSHPLLEA 119 Query: 105 LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV 164 LPE + L + + LR A+ L +E R+ G DAL S + ++R W+ Sbjct: 120 LPEVVHLPARVNG--HRDLRAAVDLLGREVRAGRSGRDALVSGLLDLVLVYSLRAWLED- 176 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 N ++ L + +V+ + P W +E LA A MSRA+ A+ F ++G +P+A Sbjct: 177 NPDRGWARALRDEGVASVLDALHTSPAEQWRIEVLADRAGMSRATLARRFTALTGRSPMA 236 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 LT R+ +A+++ LP+ +A+ VGY+S +F AF R G Sbjct: 237 YLTWWRMVLASKLLKETELPLHGVAQRVGYSSPFAFSHAFKRYNGV 282 >UniRef50_Q2KWV1 AraC-family transcriptional regulator n=1 Tax=Bordetella avium 197N RepID=Q2KWV1_BORA1 Length = 321 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 142/313 (45%), Gaps = 32/313 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+LL L + D C+L + + H A + +H L G +L+ G Sbjct: 1 MDTLSQLLSLGRIELRPDVRCLLQGAFAMRHEAAQPGEAAFHLLLAGQCRLQARQGPALI 60 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 L G+ VLLP SAH L ++ ++CG Sbjct: 61 LNEGDFVLLPHGSAHDLLDIEATTARRPVPAVVEEAGRLPLRRNTAPEQQADVDLLCGRF 120 Query: 93 RLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 A F SLP L + +H L+ I L+ E+ S +PG A+ + + Sbjct: 121 SYDRGAGDLFARSLPGVLHVPLAHH---LPQLQPLIAMLRAEAASPLPGAAAVINALGQA 177 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 LA+R + + N+L+L R+G ++ M++ PG AWT+E+L + A MSRA++A Sbjct: 178 LLALALRAYGQREEVPANMLALAADSRIGPSVRAMIQDPGQAWTIETLGNKAAMSRATYA 237 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + FR +G T L ++R+ A+ + + IAE VGY SE++F KAF G T Sbjct: 238 RHFRSRAGMTVGEFLLRIRMMHASALLNHSQRSQRDIAEQVGYQSEAAFGKAFREIMGQT 297 Query: 272 PGEYRERVRQLAP 284 PG++R R P Sbjct: 298 PGQWRRLHRNARP 310 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 123/304 (40%), Gaps = 29/304 (9%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 L ++ +G+I + L + W + + E+ R+H +G + + Sbjct: 18 VLDDVIDTLRFRGSIFFHSSLAAPWGMSLSSIEMP--RFHIALEGDFYV-GAGSSNINVN 74 Query: 63 PGNVVLLPQNSAHRLSHVDNESTC------------------------IVCGTLRLQHSA 98 P ++V++P H ++ I+CG + + Sbjct: 75 PMDIVMIPGGDMHWIADEIESERVPCEQAGDACALGMPLFQQGEITNKIMCGIVEYDEAI 134 Query: 99 RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 + + S ++ S + W+ + + E +++ ++ F + Sbjct: 135 EHPILSALPSIIQLSNIQSNDNIWM--TVKLIDAEIIRTNNKKNSIIDRLTEVLFIQLLN 192 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 +I + LS L PRL ++Q + + P WT++ ++ + MSRA+ + F+ Sbjct: 193 SFIEKNEHLTGFLSALKEPRLNKILQLIHQHPERQWTLDIISDVVGMSRATLQRKFKAAI 252 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G +P+ +++ R+ A Q+ L + IA+ +G++ + AF +G TP ++R++ Sbjct: 253 GVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFKDHYGDTPSQFRKK 312 Query: 279 VRQL 282 + +L Sbjct: 313 LEKL 316 >UniRef50_B9XR23 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobiales RepID=B9XR23_9BACT Length = 312 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 118/302 (39%), Gaps = 32/302 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDAL+ ++ L PQ + W + + + + + +G L Sbjct: 1 MDALAAVVTLLKPQAIVATLVHGSGRWGVSYS--KFGHPSFALVLKGPCWLSPDGIPAKI 58 Query: 61 LRPGNVVLLPQNSAHRLS-----------------------HVDN---ESTCIVCGTLRL 94 L G+ VL P L+ H D S ++ G Sbjct: 59 LETGDFVLFPATPGFTLASDSKTKPKSMKPIPSGKQLEEVFHGDATTKPSASLLGGYFTF 118 Query: 95 QH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 ++ L LP+ + L + + + I +++E+ G + +++ Sbjct: 119 DSINSSMLLDLLPKMVHLRGNDPGI--GSVVPIIELIKREALEKRAGQSLVLTRLIEIML 176 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R + +N +L+ L P+L ++ + H WT+ +LA A MSR+SFA Sbjct: 177 VEALRSVQSDLNA-TGLLAGLRDPQLATALRGIHTRTEHPWTLATLAREAGMSRSSFAAR 235 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F V G TPL L RL +A M + V A +VGY S S F AF RE G +P Sbjct: 236 FGRVIGMTPLNYLLHWRLSVAKAMLNSGQKTVTETALAVGYESASGFSTAFSRETGQSPK 295 Query: 274 EY 275 ++ Sbjct: 296 QF 297 >UniRef50_UPI0001AEBE6B AraC family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBE6B Length = 298 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 129/303 (42%), Gaps = 30/303 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M L L + N +WQ+ I +HA+T G L Sbjct: 1 MKNLESLFDQLQITTNVFHNGQYCGNWQID--TSGTGFINFHAVTHGQCYLHRNDDGPVL 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-------------------ESTCIVCGTLRLQHSA-RY 100 L G++VLLP +S H LS E ++CG QH R Sbjct: 59 LEKGDMVLLPVDSPHLLSPTKTHTYKNVSASSIPVSEKLRAEGPVLLCGYFEYQHPLMRV 118 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQ---ESRSAMPGVDALCSQICATFFTLAV 157 LPE + S E L E++ L E + L ++I F L V Sbjct: 119 ITKELPEFWIIK--KASKESRVLHESLQLLISASLEVSDSTFTSSVLLNKIAEVVFLLIV 176 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 + +++ ++ L LLHP + +Q + P W VE LASIA+MS++++A F+ Sbjct: 177 KHLMSKYSST---LGALLHPAIANSLQALHNAPEQHWNVEMLASIANMSKSNYAAKFKAC 233 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 +G TP+ LT+ RL+ A + P++ IA GY +E+SF KAF RE G +P + R Sbjct: 234 AGVTPIKYLTQWRLRCACTEIIQSNKPLITIANQYGYETEASFSKAFKREIGVSPSQKRV 293 Query: 278 RVR 280 + R Sbjct: 294 QAR 296 >UniRef50_C6B325 Transcriptional regulator, AraC family n=5 Tax=Alphaproteobacteria RepID=C6B325_RHILS Length = 331 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 124/314 (39%), Gaps = 36/314 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPH-------GAGELSVIRWHALTQGAAKLEMP 54 D LS LL G++ + DWQ A + +H + G+ L+ Sbjct: 18 DVLSALLSTIRLSGSLQFCFMPTGDWQTDATPSLAGLSAKASGTMPFHIVVAGSCWLKTE 77 Query: 55 TGEIFTLRPGNVVLLPQNSAHRLSHV---------------------------DNESTCI 87 E L G+V++ P + H+L + + + Sbjct: 78 DEET-DLEAGDVLVFPFGTGHQLGAGRDGMLVLPTRDLPQKPWREIPVLRYGDETQGVRL 136 Query: 88 VCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 +CG L+ + L L + + +WLR I + +E G ++ + Sbjct: 137 LCGYLQWDGLSFAPLRQALPRLIHVRTRAANDGDWLRATIRQMVEEVDRPRAGGVSMLPR 196 Query: 148 ICATFFTLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 + F +R I + L+ L P L + + + P W++E LA+ + MS Sbjct: 197 LTEIIFIEILRHQIMMAEPSSVGWLAALADPSLSRCLSLIHDDPRRDWSLEQLAAASGMS 256 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 R++ A+ F+ + T+P+ + RL +A+ + P+ IA GYA+E++F++AF R Sbjct: 257 RSALAERFQAMLSTSPIRYIRDWRLYLASVALATSGQPIAAIAYEAGYATEAAFNRAFSR 316 Query: 267 EFGCTPGEYRERVR 280 F P +R + Sbjct: 317 AFATPPAAWRATAQ 330 >UniRef50_Q47YP7 Transcriptional regulator, araC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YP7_COLP3 Length = 273 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 121/281 (43%), Gaps = 9/281 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + + L + H E + H L G L G+ Sbjct: 1 MDQLSVILQRFSMNTEVFFTGNLCG---ISHFNKEPNRGHLHLLLSGELTLIDEEGKSRL 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRL-QHSARYFLTSLPETLFLAPVNHSVE 119 + V+ P AHR+ ++ +VC + + S+ +LP + + Sbjct: 58 VNEPTVLFFPTPHAHRIIGNEDNPPELVCANIIYNESSSNPIANALPSMMSFKLSDD--- 114 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 L++ +L +E+ G + + + F +R + + +L+ L HP++ Sbjct: 115 -ERLKQTADWLFEEAFHERSGQLPMINSLTNIFLIHVLRHVLDNNIMQHGLLAGLAHPQV 173 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 V+ + + P W +E +A +A MSR+ FA +F+ G +P L R+ +A + Sbjct: 174 SIVLLAIHKAPEQQWGLEEMAELAIMSRSKFADIFKRTVGQSPGDYLIDWRIIVAKGLLK 233 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + PV ++A +VGY + S+ + F ++ G +P ++ E+ R Sbjct: 234 K-DKPVALVANAVGYENGSALARVFRKKLGISPKQWVEQTR 273 >UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9P9_ACTMD Length = 309 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 115/295 (38%), Gaps = 18/295 (6%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + ++L L P+ + + W I+ + +G L + E L Sbjct: 20 DPVRQVLALARPRAVVPAPLRATAPWGARFS--PFPHIKLGVVAEGEFWLCVDGLEPILL 77 Query: 62 RPGNVVLLPQNSAHRLSH----------VDNESTCIVCGTLRL---QHSARYFLTSLPET 108 R G+ LL A+ L + T+ A ++LP Sbjct: 78 RAGDFYLLGNPPAYGLGSSVETAREGISGNGPGAFAYTCTVDFEFRDADASTLFSALPPA 137 Query: 109 LFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK 168 + + + W L E + G + + +R + Sbjct: 138 VVVRADETGGQLLW--NIATLLVHEFQEPRTGQSLVLEHLAQILLVHMLRSHADSSHEPL 195 Query: 169 NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTK 228 L+ ++ +GAV++ + PGH WT+E LA+IA MSR+SFA FR G PL L + Sbjct: 196 GWLASVVDDGIGAVLRAVHAEPGHRWTLEELAAIARMSRSSFAVNFRTKVGKPPLDYLIE 255 Query: 229 LRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 R+Q+A + IA ++GY SES+F AF R G +P E+R +R A Sbjct: 256 WRMQLARAALR-TDDSLTSIAGAIGYRSESAFSTAFRRVVGVSPREFRVSLRPRA 309 >UniRef50_B0U5T8 Transcriptional regulator AraC family n=12 Tax=Proteobacteria RepID=B0U5T8_XYLFM Length = 285 Score = 220 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 12/281 (4%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGS--DWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIF 59 D L LL + + + L D+ +P G++ H L GA + P E+ Sbjct: 11 DRLEALLNHFPVRARMFHSGALCGIADFSVPAEGGQV-----HLLRSGAMDVIHPGRELL 65 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQH-SARYFLTSLPETLFLAPVNHSV 118 + +++ P+ + R +VC L + SA +LP+ + L N Sbjct: 66 QVSVPSLLFYPRPMSRRFVADAQCGADLVCAQLDFEGGSANQVAGALPDVVCLPLEN--- 122 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 + + + L E+ G L ++ +R + +L+ L HP+ Sbjct: 123 -IDGAAQVLELLFDEAFGDHCGRRVLIDRLFEVVLIQMLRYLMETGGVAGGMLAGLSHPK 181 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 L V+ M E P W++E+LA +A MSR+ FA FR V G TP L R+++A Q Sbjct: 182 LRKVLVAMHEQPERGWSLEALAYLAGMSRSVFAGTFRRVVGCTPGVYLQGWRVKLAQQAL 241 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + + IA VGY SE++ +AF + G TP E+R+R Sbjct: 242 RQGRQLLKTIAVEVGYGSEAALSRAFKAQCGMTPREWRQRQ 282 >UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=Bacteria RepID=Q399T6_BURS3 Length = 325 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 118/309 (38%), Gaps = 34/309 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D L+ ++ L P K S W + + A+ G ++ + Sbjct: 22 IDPLTEVVTLLQPGARHSKYIRGASPWSISRTVA--GEPFYCAILDGGCRIAIDGHAPIE 79 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES--------------------------TCIVCGTLRL 94 L PG+ +L+P +S ++ + T ++ G Sbjct: 80 LLPGDFMLIPAVYGVAMSSLEPPAPGVETAPPVELDPGEFRIGDPANPVDTRMMAGNCSF 139 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 S L SL H L + ++ ESR+ P D + +++ Sbjct: 140 GSSDASLLVSLLPRFV-----HVRGEPRLTTLVQLVRDESRAQRPARDIVLARLLEVLLI 194 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R + + N ++ L RL A I++M E P H WT+ LA A +SR++F + F Sbjct: 195 EALR-FTSGTNASPGLVRGLADSRLAAAIRRMHERPAHPWTIVELAKEAALSRSTFFERF 253 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 G P+ L R+ +A + R + IA VGY+S S+F AF R G P + Sbjct: 254 SRAVGLAPMEYLLTWRMALAKDLLRRNEGRIAEIAGRVGYSSASTFSVAFTRHVGRPPAQ 313 Query: 275 YRERVRQLA 283 Y + A Sbjct: 314 YAREEQATA 322 >UniRef50_Q488F1 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q488F1_COLP3 Length = 275 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 8/282 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS++L + + + L L G + H L G + G T Sbjct: 1 MDQLSQILENLSFNADVFFSGNLCGIQSL--GGADSKKGHLHLLKSGVLTIVCEEGHKVT 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVE 119 L +V+ +P S H++ +++ +VC + S + +LP+ + L H Sbjct: 59 LDKPSVIFMPGPSKHQVIASESDDAELVCADVDFHSGSGAALVNALPKFICLNIGQHDP- 117 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 + +L +E+ + G + +++ F +R I + + +L+ + HP+L Sbjct: 118 ---VGRTAHWLFEEAFNKQAGQQMIVNKLGDIFLIQMLRHVIKEGIVIQGMLAGMAHPQL 174 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 A++ + + P WTVE +A A MSRA FA LF+D G P LT LR+ +A + Sbjct: 175 SALMTALHKRPQEQWTVELMAETALMSRAKFAALFKDTIGQAPSDYLTDLRIALAQGLLK 234 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + PV +A VGY S+ + F ++ G +P E+ + R+ Sbjct: 235 K-DKPVSFVANEVGYEHGSALARVFRKKTGLSPKEWLMKFRK 275 >UniRef50_B4VBF5 Transcriptional regulator n=4 Tax=Actinomycetales RepID=B4VBF5_9ACTO Length = 322 Score = 219 bits (559), Expect = 7e-56, Method: Composition-based stats. Identities = 83/309 (26%), Positives = 118/309 (38%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 MD +S + + W A +H + +G L G E Sbjct: 1 MDVVSDAIAAVRIGRPSSDRMRVSGSWCARFDA--YDGAGFHVVLEGTCWLLPDGGGEPV 58 Query: 60 TLRPGNVVLLPQNSAH-------------------------------RLSHVDNESTCIV 88 L G+ VLLP + H R S + ++ Sbjct: 59 ALGAGDAVLLPHGTGHVIADSAVDEATVRGAVRFEDWRAEERSERPSRQSPAAGAAVEML 118 Query: 89 CGTLRLQHSARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 CG RL S + L + LP + LA N + LR AI L +E PG Sbjct: 119 CGKYRLDRSRVHPLMAELPRVVHLA--NRVGAHPELRSAIDLLGRELGGQRPGAWIAVPN 176 Query: 148 ICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 + VR + + T ++L P A ++ + P AWT + LA+ A +SR Sbjct: 177 LLDLLLVYMVRSCLDEGATGV-WPAVLGDPVTAAALRALHADPAAAWTNDRLAAEAGVSR 235 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 + A+ F + G P+A LT RL AA + P+ IA VGYA+ +F AF RE Sbjct: 236 PTLARRFTALVGRPPMAYLTWWRLTFAATLLRDTADPLAAIARRVGYATPYAFSHAFNRE 295 Query: 268 FGCTPGEYR 276 FG TPG YR Sbjct: 296 FGTTPGRYR 304 >UniRef50_B1MI41 Putative transcriptional regulator, AraC family n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MI41_MYCA9 Length = 306 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 79/286 (27%), Positives = 128/286 (44%), Gaps = 11/286 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +DA S +L +G C + + A E + H ++ + + Sbjct: 24 IDAFSGILSAIGLRGESALRCSAELPFDVSVPANERVL---HIAETAGLRVYVDGNPVCV 80 Query: 61 LRPGNVVLLPQNSAHRLS----HVDNESTC-IVCGTLRLQH-SARYFLTSLPETLFLAPV 114 L G++VL+ + +AHRLS H + T V G + +A L+ LP + + Sbjct: 81 LAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAERKAADPLLSVLPPAIIIQAA 140 Query: 115 NHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLL 174 + WL ++ + E + PG + S+I F AVREW + + E L+ Sbjct: 141 RPG--HEWLPLSLQLILAEILTPSPGSWVMISRILDLLFIHAVREWSSSSHAEPGWLTAA 198 Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 + PRL V+ + H W++ LA A SR++F Q F ++ G P A + + RL A Sbjct: 199 MDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTELLGQPPAAYIGERRLDRA 258 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 A + T PV I +VGY S+++F +AF R FG P +R R Sbjct: 259 AHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWRTHHR 304 >UniRef50_C5V7T6 Transcriptional regulator, AraC family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7T6_9PROT Length = 298 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 23/293 (7%) Query: 4 LSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLR 62 L+ L + L W + G+ + +H + G A + M + + Sbjct: 8 LNYFLRHLHLGSEVYYIGQLCDAWHMSTPGGDATT--FHLVCHGGAWIHMQDHSQPTQMH 65 Query: 63 PGNVVLLPQNSAHRLSHVD------------------NESTCIVCGTLRL-QHSARYFLT 103 G++ P ++AH S ++ T ++CG L+L H R L Sbjct: 66 SGDIAFFPHDAAHTFSALEKVPDKPFDYRNPAPLDKTAPGTGLLCGHLKLPTHIRRLLLA 125 Query: 104 SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ 163 S PE + + P + S +R I + +E+ GV A+ ++ T F VR + Sbjct: 126 SFPEFILIRP-DQSPVGRQMRNLIEMMTEEAMQNDLGVTAILDRLSDTLFLYIVRHALHL 184 Query: 164 VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPL 223 +L+ L L + +E P AWTV+ +A +A SR++F++ F + P+ Sbjct: 185 EPKLSPLLAALSDEHLRLAVSAFIEQPAQAWTVDRMARLACQSRSAFSERFTQLVKMPPM 244 Query: 224 AVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +T R+Q+AA M + E ++ +A GY SE++F KAF R G TPG+ R Sbjct: 245 EFVTTWRMQLAAGMLAGEYSNMLDVALRCGYESEAAFRKAFKRIIGITPGKAR 297 >UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B4SR55_STRM5 Length = 277 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 10/283 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ LL + ++ L + E + H + +G ++ + + Sbjct: 3 DRLAILLERFSVTASVFHAGALCG---INSLESEDEAGQLHLVRRGPVQVSH-GQQTVQV 58 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTS-LPETLFLAPVNHSVEY 120 +++L P+ + HR S + C L + +++ LP+ + L + Sbjct: 59 EVPSLLLYPRPTPHRFSTDPQHGADMACANLHFEGGRLNPISAALPDFICLPLADLYGG- 117 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 A+ L +E+ G A+ +++ +R+ + + + L HPRL Sbjct: 118 ---HAALELLFEEAFEQRCGRAAMVNRLFEVVMIQVLRQLMEGGEMRGGLFAGLGHPRLR 174 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + M E P AWT+E LA +A MSR+ FA FR+ GTTP L R+ +A Q + Sbjct: 175 LALVAMHESPAQAWTLEDLADVAGMSRSVFAASFREAMGTTPGQYLQGWRVGLAQQALRQ 234 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 P+ IA+ VGY SE++ +AF G +P ++R + R A Sbjct: 235 GR-PLKRIADDVGYGSEAALSRAFKAHTGQSPRQWRGQARATA 276 >UniRef50_Q21T04 Transcriptional regulator, AraC family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21T04_RHOFD Length = 279 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 9/276 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL + + + +GA L H + G ++ + Sbjct: 1 MDTLSNLLTHFSLHAGVFYTGNICGTH--DYGADALRG-HIHLVKHGPVQVIGERHGVIN 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVE 119 + +++ LP+ +HRL + +VC T++ R + SLP + + E Sbjct: 58 ITEPSLLFLPRPDSHRLIADERAGADMVCATVKFGGGGRNPVNDSLPNVVLVKLA----E 113 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 ++E + + E+ S G A+ +++C +R +A T+ L+ L RL Sbjct: 114 LAKVQELLELMFDEAFSDQCGRQAVLNRLCEVLMIRLLRYCMAHGLTQGGTLAGLADKRL 173 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 V+ + + P A + S+A++A MSRA FA FR+V+ TP L R+ A + Sbjct: 174 AKVLTDIHKDPARARDLASMAALAGMSRARFAARFREVTAETPADYLASWRIMTAQGLLK 233 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 R + +A+ VGY S S+ +AFVR+ GC+P E+ Sbjct: 234 RGRQ-LKHVADDVGYGSASALTRAFVRKLGCSPTEW 268 >UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BUW4_BEUC1 Length = 322 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 77/324 (23%), Positives = 128/324 (39%), Gaps = 47/324 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGEL----------SVIRWHALTQGAAK 50 MD LS +L+ G + + S + + +I +H LT G+ Sbjct: 1 MDVLSDVLLAVRLTGAVYFDIEARSPFVAESPPTDKIAAKVAVDADHLIAFHVLTSGSCW 60 Query: 51 LE--MPTGEIFTLRPGNVVLLPQNSAHRLSHVDN-------------------------- 82 +E LR G +V+ A+ L+ Sbjct: 61 VEAVDEPEPAVLLRAGEMVIFSSGEANILASAPGMRGQPDASRYYRPVNEALPFVIDITG 120 Query: 83 ----ESTCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSA 137 + IVCG L L SLP + S + W+ + S Sbjct: 121 DAAADRCRIVCGYLACDKGPFNPLLDSLPRMVHAPVSERS--WGWMTSLLDAAIVASDER 178 Query: 138 MPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTV 196 G +A+ +++ F A++ I + + +N ++ L +G+ ++ M WT+ Sbjct: 179 DAGQEAMLAKLSELMFVEALKTHIEGLPADTRNWVAGLRDREIGSALRLMHGRFAEPWTL 238 Query: 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYAS 256 E LA MSR+S A+ F G P+ L + RLQ+AA++ + V A +VGY S Sbjct: 239 EHLARDVGMSRSSLAERFTAYVGVPPMTYLARWRLQLAARLL-QSGSGVAQAASAVGYQS 297 Query: 257 ESSFHKAFVREFGCTPGEYRERVR 280 ES+F++AF R+ G PG +R R+R Sbjct: 298 ESAFNRAFKRQVGEAPGVWRRRLR 321 >UniRef50_D2PNB5 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PNB5_9ACTO Length = 337 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 122/305 (40%), Gaps = 28/305 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D ++ + L P+ + + +W L +R + +G L + E L Sbjct: 6 DPVADAIGLLRPRTVVGPSLRAVGEWALRFDT--FLHVRIGGIVRGTCWLILDGHEPVLL 63 Query: 62 RPGNVVLLPQNSAHRLSHV------------------------DNESTCIVC-GTLRLQH 96 + G+ LL + L+ ++E +C G + Sbjct: 64 QEGDTFLLGNPPPYVLASTLDARPRPAEPVWATAEDGFVRIGPESEQDLYLCVGHIAFDD 123 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 LT L L + + L + I L E A G + + + Sbjct: 124 RNAGLLTDLLPPLVIVR-GADPQGARLGQLIDLLATEVGIAAAGGPLVQNHLAQILLVHM 182 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R Q + L L +GA ++ + H+WT++ LA I+HMSR++FAQ F+ Sbjct: 183 LRAHAGQTDRPTGWLGALNEDGIGAALRALHADVAHSWTLKELAEISHMSRSAFAQAFKS 242 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G PL L + R+ +A +R+TL + +A + GY SES+F AF R G +P ++R Sbjct: 243 HVGVPPLEYLIQWRMSLARDALARDTLSISELARATGYLSESAFSTAFRRVVGSSPAQFR 302 Query: 277 ERVRQ 281 + RQ Sbjct: 303 NQARQ 307 >UniRef50_A0KDP5 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=A0KDP5_BURCH Length = 308 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 29/301 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LS +L L + + G W + I+++A+ +G+ L + G Sbjct: 4 DPLSEVLSLLETRDSFFTGLRAGGPWAVDLP--PPDGIKFNAVVEGSCWLTVDGAGPPVR 61 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-----------------------ESTCIVCGTLRLQHS 97 LR G+ LL A L+ + ++ G + Sbjct: 62 LRTGDCFLLAAPRAFSLASDPSVAPVPAADVYRHLERGIAHYGEPADCFLIGGRFAYEER 121 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 L SLP + ++ S LR ++ L +E ++ PG + + + Sbjct: 122 MPLLLGSLPPVVIVS--GDSEPAAVLRWSLQQLAREFGASSPGGSLMVRHLGHMMLVQIL 179 Query: 158 REWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R ++ A N + L+ R+ A + + P WTV++LA+ H+SR++FA F+ Sbjct: 180 RRYVDAGANGDVGWLAGFADARVSAALAAIHAAPERRWTVDALAACCHVSRSTFALHFKQ 239 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G PL + + R+Q+A + R + IA+ +GY S+S+F AF R GC+P YR Sbjct: 240 RLGFGPLEYVLRWRIQLAMRELRRSNASISAIAQRLGYDSDSAFGHAFKRIVGCSPRAYR 299 Query: 277 E 277 Sbjct: 300 H 300 >UniRef50_A8ZMX0 Transcriptional regulator, AraC family n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZMX0_ACAM1 Length = 328 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 130/318 (40%), Gaps = 41/318 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGE-----------LSVIRWHALTQGAAK 50 D LS +L G++ + + W + + + +H + +G + Sbjct: 6 DILSDVLNSLDICGSLLLHESYTAPWAISVPGAQQLGKLLRVQTGTRAVAFHLVERGYIE 65 Query: 51 LEMP--TGEIFTLRPGNVVLLPQNSAHRLS-----------------------HVDNEST 85 L P + + G +V+ S H++S D S+ Sbjct: 66 LTSPQLGVKPMVVEAGEMVICFSGSPHQISQGTEPPSISVEYVLSGGEIPFRCSADARSS 125 Query: 86 CIVC--GTLRL-QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 ++C G L +LP L APV+ + L + +E G Sbjct: 126 SLLCLCGIFYLRDTYLNPLFAALPPVLH-APVSQVESFQNLTGVASLIAKELDKPSAGSS 184 Query: 143 ALCSQICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++ AVR ++A+++ + + L+ L P + + ++ PGH W+V+SLA Sbjct: 185 FMVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVDSLAQ 244 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 +S + FA F+ G P+ ++K RL IA+++ +R + IA VGY + ++F Sbjct: 245 SVELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNLAAFT 304 Query: 262 KAFVREFGCTPGEYRERV 279 +AF R FG PG +R R Sbjct: 305 RAFKRYFGEPPGAWRTRH 322 >UniRef50_C8SUE3 Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SUE3_9RHIZ Length = 344 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 118/319 (36%), Gaps = 37/319 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHG---------AGELSVIRWHALTQGAAKLE 52 D LS +L G++ N + + + A + +H + G E Sbjct: 17 DLLSEMLKAVRLTGSVFLNACFSAPFGVVAPKYYDPVSPMACLRHISIFHFIVAGNCTFE 76 Query: 53 MPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNEST 85 GE + G+++ LP HR + Sbjct: 77 AANGERREVTAGDLLFLPFAGHHRFWKGEPLVMAAAGEIVQPGRIEGMWTVNYGGGGDEL 136 Query: 86 CIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 ++CG L + L + ++ + + + + +A PG A+ Sbjct: 137 RMICGFLESSEFLFAPVFRTLPALIVEKMSENKIGALIASTVREIDLHVAAAAPGSQAML 196 Query: 146 SQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 ++ F +R +A++ K + L P +G +Q + P WTV +A Sbjct: 197 GRLMELLFVELLRRHVARLPPGSKGWFAALNDPIVGRTLQLLHADPARHWTVGQIADKVG 256 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 SR A+ F + G P+ LT R+Q+A + + IA VGY SE++F +AF Sbjct: 257 SSRTIVAERFNALLGRPPIEYLTGWRIQLAGERLRFGHESLASIAAGVGYQSEAAFSRAF 316 Query: 265 VREFGCTPGEYRERVRQLA 283 R G TPG++RER + A Sbjct: 317 KRVTGITPGKWRERTGRRA 335 >UniRef50_C6XBB1 Transcriptional regulator, AraC family n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBB1_METSD Length = 274 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 12/280 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ LL + L AG + H + G + + G + Sbjct: 1 MDQLAPLLRQITFSAQSFHSGELCQLVAFDENAGYI-----HIVRSGKVTMTVRNGPPQS 55 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVE 119 + +V+ P+ H L + E+ ++C + L L SLPE + L + S+ Sbjct: 56 ITQPSVIFFPRTCPHALVP-EGENAELLCAYVDLGAKVGSPLALSLPEAIVLPMDDMSL- 113 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 ++ + L +E+ G A ++ F +R +A I + L RL Sbjct: 114 ---VKPTLELLFREALQESFGRQAALDRLIEYFLIQMLRHVLAMGQLNGGIFAALADSRL 170 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 + M E PGH W+++ LA IA MSRA FA FR+ G TPL LT R+ +A M Sbjct: 171 KHAVNAMHERPGHPWSLDELADIAGMSRARFAVNFRETVGVTPLDYLTNWRMSVAQSMLK 230 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 P+ +A +VGY S+++ + F + G P E+ ++V Sbjct: 231 -SGRPIKSVAAAVGYQSQAALARVFAKRLGQAPTEWLKQV 269 >UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XWK6_KLEP3 Length = 306 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 36/310 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ + + + K DW++ LS + + +G +LE+ E L Sbjct: 3 DPLAEVIAMLNLRAVLTKTVEGAGDWRVIRSDQGLSF--YGVVLEGGCRLEIDQHEPQLL 60 Query: 62 RPGNVVLLPQN-------------------------SAHRLSHVD-NESTCIVCGTLRLQ 95 R G+ +L+P RL +D + G Sbjct: 61 RAGDFILIPAAYRFALTSLTPPPSPALETIPVQLAEGHFRLGALDKPAQMQALIGHCASG 120 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + L SL + L + L++E+++ G + +++ F Sbjct: 121 STNASLLASLLPAFVVV-----RNQPRLATFVGLLKEEAQADRAGKSFVLARMVELLFIE 175 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 A+R + ++ L PR+ I+ + + P WTV LA+ +SR++ + F Sbjct: 176 AIRS--SGTLATPGLMRGLSDPRVAQAIRLLHQAPARRWTVNDLAADCALSRSTLFERFT 233 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 D++G TP+ L R+ +A Q S + + IAE +GY S S+F AF R G +PG+Y Sbjct: 234 DLTGMTPMGYLLGWRMTLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKY 293 Query: 276 -RERVRQLAP 284 R+R Q P Sbjct: 294 ARQRATQPPP 303 >UniRef50_C5CZF0 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CZF0_VARPS Length = 333 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 126/318 (39%), Gaps = 38/318 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGEL----------SVIRWHALTQGAAKL 51 D LS L G I + L + W ++ +H L +G A + Sbjct: 5 DPLSEALGNVRLSGAIFLDAELSAPWGFASPPASAGAHLIAPSAEHMVLFHLLVEGRASV 64 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNES 84 +P L G+V +LP AH L Sbjct: 65 RLPGQPRLALEAGDVAILPLGDAHELWNGRGAELTDSSALLPKILEGAVVSERGGGGGPV 124 Query: 85 TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 T +CG + AR F + LF + W+ + L + A G +AL Sbjct: 125 TKFICGYIGCDRQARRFFLAGLPPLFKVNIRRGSTGAWIESTLRHLASDREPAGAGRNAL 184 Query: 145 CSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +++ F +R +++++ ++ L+ +G + + P H WTV SLA A Sbjct: 185 LAKLAEALFIETLRRYMSELPRQRTGWLAAARDSAVGRALGAIHREPAHPWTVASLAEQA 244 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MSR FA+ F + G PL + + R+Q+ A++ V+ +A + GY SE++F++A Sbjct: 245 GMSRTVFAERFTRLLGEAPLGYVARCRMQLGARLLESTDDTVLEVALNAGYESEAAFNRA 304 Query: 264 FVREFGCTPGEYRERVRQ 281 F REF P YR + R+ Sbjct: 305 FKREFDVPPARYRMQRRR 322 >UniRef50_C8PYQ8 Transcriptional regulator, AraC family n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYQ8_9GAMM Length = 327 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 127/319 (39%), Gaps = 44/319 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS LL T +W + I ++ +T G +++ Sbjct: 1 MDALSMLLEDIHLYQTQYHYIHATGEWS--FELDKKDCIVFYLITTGGISIKVDDV-YRN 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-------------------------------------- 82 +V+++P H + V Sbjct: 58 AHARDVLMVPGGKKHLICGVGQSDIPSIDIAPLLTSQTVETINLGNPVIHSKGDEPAQTT 117 Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 E IVC R R L++LPE L + + L + FL ES G Sbjct: 118 EIVAIVCHYDR--EITRPLLSALPEILPESESKDEQKMIMLDLGVKFLALESEQNRLGKM 175 Query: 143 ALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++I + VR +I + N L + P L + M + P WT+ LA Sbjct: 176 TIINRIASILMIECVRNYIEDLPEATDNWLKAVKDPYLAKALAVMHDRPETNWTIHKLAE 235 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 +A MSR+SFA+ FR+V G PL LT RL++AA+ + + I+E VGYAS+S+F Sbjct: 236 VAGMSRSSFAEHFREVVGVPPLTYLTDYRLRLAARYLRLQENSISRISELVGYASDSTFS 295 Query: 262 KAFVREFGCTPGEYRERVR 280 +AF R + +P +YR+ R Sbjct: 296 QAFKRVYKMSPRKYRQSFR 314 >UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=Dickeya zeae Ech1591 RepID=C6CFN8_DICZE Length = 307 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 133/308 (43%), Gaps = 32/308 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLP-HGAGELSVIRWHALTQGAAKLEMPTGE-I 58 MD L L+ G + + + W L G +L+V HA+ QG A L + G+ Sbjct: 1 MDILQEHLVRARASGGVFARSIAIAPWGLRLPGTIQLAV---HAMIQGRAWLWLDGGDDP 57 Query: 59 FTLRPGNVVLLPQNSAHRLSHV----------------------DNESTCIVCGTLRLQH 96 LRPG++ L+ H ++H D + +CG R Sbjct: 58 IELRPGDLALVRGGPDHFVAHEPGACCVVPEVFRTEHAADGAEHDPRAAVFLCGAYRFAG 117 Query: 97 S-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + LP + S N + + L +E A PG + ++ L Sbjct: 118 DIGAGLVNGLPPVFLIP----SRMDNPVHGVVELLSRELSQAEPGRQTVLDRLLDVLVVL 173 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R +A + RL +Q M +WTV+ LA +++MSRA+FA++F+ Sbjct: 174 GLRSGLASSVNAPAWVRGATDARLSLALQAMHGDTSKSWTVDELARMSNMSRATFARVFQ 233 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +V G TP+ LT R+ +A + + +P++ +AE VGY+S +F AF R G PG++ Sbjct: 234 EVLGNTPMRYLTDWRMTVARDLLRTQDIPLIEVAERVGYSSLYAFVTAFRRHHGQPPGKW 293 Query: 276 RERVRQLA 283 R+ + L Sbjct: 294 RQSGKDLP 301 >UniRef50_B8CRW0 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CRW0_SHEPW Length = 311 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 27/298 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M +++LL TI +L + W L+ +H ++QG A L + Sbjct: 15 MTDINKLLANFHLNATIFHRSLLCNTWSTDTSGSGLA--SFHLVSQGQAYLYCDDIKALE 72 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC--------------------IVCGTLRLQHSARY 100 L G++V+ P ++ H +S D+ T ++CG + Sbjct: 73 LNAGDLVVFPHDAPHIISSSDDAETAASINSFIAYPMAHKSANQTGLICGYFDFSEDKSH 132 Query: 101 FL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 L LP + L + + L + L +E++ + + + S++ FF +R+ Sbjct: 133 PLICQLPTCMVL---HKHQQQGALAGIVQSLIEEAKLGLLANEVILSRLSEVFFLNLIRK 189 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 T + L P++ V+ + H WTV ++A I SRASFA F+ Sbjct: 190 LSLDEQTNIGLFKALQDPKMNKVLHAINTDLAHHWTVNTMAEIGGYSRASFASYFKSYLE 249 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 TPL LT+LRL A + V A VGY ++ SF KAF R FG PG R+ Sbjct: 250 LTPLEYLTRLRLSQAKKQLRAGD-SVYKTALDVGYQTDVSFAKAFKRYFGYGPGSSRK 306 >UniRef50_A9GK43 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK43_SORC5 Length = 327 Score = 216 bits (550), Expect = 8e-55, Method: Composition-based stats. Identities = 81/317 (25%), Positives = 129/317 (40%), Gaps = 36/317 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP--TGEI 58 MDALS +L + T + V + W + + S IR+H + +G+A L + Sbjct: 1 MDALSAVLAPVRLRRTRWVSTVGRAPWGVALPEVK-SCIRFHYVVRGSAWLSVDKTDEPR 59 Query: 59 FTLRPGNVVLLPQNSAHRLSHVD-----------------------------NESTCIVC 89 L G++ +LP AH L T + Sbjct: 60 VALSGGDLAVLPLGHAHALRDHPRSPPRSFAELVRCAPNPTHDVIHIDLGTKGPETTFIT 119 Query: 90 GTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 G L A L +LP + + P ++L I F+ +E + PG + + ++ Sbjct: 120 GGFVLDDPLATPILATLPPLIRMTPDTEQAVPSFLEN-IQFITREIETNRPGSEIVLLRM 178 Query: 149 CATFFTLAVREWIAQVNTEKN-ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 F +R ++A++ + L L P A + M WTV SLA A +SR Sbjct: 179 ADVMFIQILRAYLARLPEDGGGFLGALRDPSTAAALGAMHRRAEEPWTVASLAKEAGLSR 238 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 + FA F + G PL LT+LR+Q AA + P+ ++ GY+SE+SF AF + Sbjct: 239 SVFAARFAALVGEPPLGYLTRLRMQKAAVLLREG-APLAKVSRLTGYSSEASFSHAFRQW 297 Query: 268 FGCTPGEYRERVRQLAP 284 G PG +R + P Sbjct: 298 AGMAPGAWRRHLESSDP 314 >UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=Actinomycetales RepID=A8KZG5_FRASN Length = 330 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 116/317 (36%), Gaps = 41/317 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS + + + L + W + + + +H + G L Sbjct: 1 MDVLSDAVTMLRTGRPHSNSNRLWAPWGIRFPPTDGAG--FHIVLMGTCWLLRAGARPLR 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES------------------------------TCIVCG 90 L G++VLLP+ H L+ T ++CG Sbjct: 59 LAAGDIVLLPREPGHALADDPASPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCG 118 Query: 91 TLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 + L LP+ + L + LR A+ L E G A S + Sbjct: 119 AYMFDRFRLHPLLADLPDVIHLP--ARVGHHPRLRAAVDLLGAELAEPRAGAAASMSALL 176 Query: 150 ATFFTLAVREWIAQVNTEKN------ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +R W +T + + L P + A ++ M P WTV L + Sbjct: 177 DLLLLYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARV 236 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 +SR FAQ F + G PLA LT R+ +AA++ P+ +A GY+SE +F K Sbjct: 237 GLSRTVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKT 296 Query: 264 FVREFGCTPGEYRERVR 280 F REFG PG +R R Sbjct: 297 FKREFGVPPGAFRREGR 313 >UniRef50_D2BAU8 AraC family transcriptional regulator n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BAU8_STRRD Length = 327 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 128/311 (41%), Gaps = 30/311 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IFT 60 D LS LL G + W + + +++ H + +G +E+P Sbjct: 6 DLLSELLAPLRLHGVFQSRWSARAPWGVAGESEHCAIL--HYVQEGECTVELPEAAGPIR 63 Query: 61 LRPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTLR 93 LR G++ + P SAHRL+ T ++CG L Sbjct: 64 LRAGDLAVFPHGSAHRLADRPGRPTVPLSGLLPGRRPGTVRTVEIDGPGPVTTMLCGGLH 123 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 +A L +F+ L + + L E PG + + F Sbjct: 124 YDGAATAPLYRALPAVFVLDRPMLERQPLLADTLRGLTCEWADGEPGAGLVALRAFELTF 183 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 LA+R ++++ + +L L HP + + + WT+ESLA+ A +SR++FA Sbjct: 184 VLALRAVLSELTFGEPVLRALRHPAISRALLAVHSRFAEPWTLESLAAEAGLSRSAFAAT 243 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 FRD+ G P+ LT R+Q AA++ + TL ++E VGY S FH AF G TPG Sbjct: 244 FRDLVGEPPMRHLTGRRMQEAARLLTETTLAQNRVSERVGYRSGVGFHLAFRTWCGQTPG 303 Query: 274 EYRERVRQLAP 284 EYR + P Sbjct: 304 EYRRSRQSAGP 314 >UniRef50_A8L3A5 Transcriptional regulator, AraC family n=1 Tax=Frankia sp. EAN1pec RepID=A8L3A5_FRASN Length = 349 Score = 215 bits (549), Expect = 9e-55, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 29/308 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L LL G + +L S W + G E + H + +G+ + L Sbjct: 11 DLLGELLRPIRLTGVFQSHWLLNSPWSI-EGDSESDCVVLHYVIEGSCWIGTEGARPVLL 69 Query: 62 RPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTLRL 94 R G++ + P +HR+S + E T I+C L Sbjct: 70 REGDLAVFPTGRSHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQTRILCAGLYY 129 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + L + LR+ I L + R PG + +I FF Sbjct: 130 DANTVSSLYHALPWILTLEREAVEAELLLRDIIHQLVTD-RDGGPGARLITLRIFEVFFI 188 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 L++ + + +L+ L P + + M WT+ESLA MSR++FA F Sbjct: 189 LSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMSRSAFAASF 248 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 R++ G +P + L R++ +A++ + +P+ I + VGY S FH AF + FG TPGE Sbjct: 249 REIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRKRFGITPGE 308 Query: 275 YRERVRQL 282 YR+R R++ Sbjct: 309 YRQRFRRV 316 >UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-type DNA-binding domain and DSBH domain n=1 Tax=Idiomarina loihiensis RepID=Q5QTS9_IDILO Length = 307 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 25/297 (8%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG--EIFT 60 AL+ LL A + L W L A E + +H +T G +P E Sbjct: 14 ALNELLEQVARGTELHFESGLCGHWTL--MAKEPGKVAFHVVTNGDCWFGLPGSSVEPIK 71 Query: 61 LRPGNVVLLPQNSAHRLSHV-----------------DNESTCIVCGTLRLQHSA-RYFL 102 L +++ + ++ +H LS D+E + +VC + A Sbjct: 72 LSASDIIFVNKDVSHFLSKTQIPSDISESDIPKYCQRDHEQSGVVCYDVNSAPGANDTLF 131 Query: 103 TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA 162 LP L L + + L I ++ E+ + PG + S++ +R+ I Sbjct: 132 QLLPPWLILKQADQ---HQQLSHIIELIRAETINQSPGYQTVISRLSDVLSLNLLRQVID 188 Query: 163 QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTP 222 + + + L+ L +L VI ++ PG WTVE LA +A++S ++FA+ +G TP Sbjct: 189 EDESLRGPLAALSDRQLRTVIMAVINEPGADWTVERLAELAYLSVSAFAERCIKKTGVTP 248 Query: 223 LAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 ++ +LRLQ A M S L + +IAE +GY S ++F + F + G +P EYR + Sbjct: 249 KKLVDQLRLQRARIMLSSSQLSMDLIAEQLGYQSATAFSRFFKKYAGLSPAEYRHQT 305 >UniRef50_A4Z2A2 Putative transcriptional regulator, AraC/XylS family n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4Z2A2_BRASO Length = 269 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 103/275 (37%), Gaps = 12/275 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD + L P+ L + + H G L P + Sbjct: 1 MDPFAALFAHVTPRARTFFAGNLCN------SVDFTDIGHLHLFKGGVLTLTQPGADDLA 54 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVE 119 L ++ P+ HR +VC T+ L + LPE + + H Sbjct: 55 LHEPMLLFFPRGRTHRFVVDPARGADLVCATVELGGAEGNPIGEGLPELIVMPIAGHPT- 113 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 L L E + G A ++ L VR +A +L+ L PRL Sbjct: 114 ---LAPVCDLLMAEGFADDGGRQAALDRLFDYLLILIVRHVVAHGGVASGVLAGLADPRL 170 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 + + + P W+++ LA IA MSR FA FR G TP+ LT R+ +A Q+ + Sbjct: 171 AKALTAIHDAPARPWSLDDLADIAGMSRTRFADAFRTRVGRTPIEYLTLWRMALARQLLA 230 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 R PV +A VGY S ++F + F + G P Sbjct: 231 RGR-PVKSVASQVGYDSAAAFSRVFSKVSGRPPRA 264 >UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QE65_PSYCK Length = 311 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 126/310 (40%), Gaps = 32/310 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS LL T +W + I ++ + G+ ++M +G + Sbjct: 1 MDALSVLLQNVHLFDTKYYRLNGTGNWSYSLTRQD--TIVFYLVMSGSFCIDMGSG-LRE 57 Query: 61 LRPGNVVLLPQNSAHR---------------------------LSHVDNESTCIVCGTLR 93 G+++++P H + + + ++ + Sbjct: 58 AHAGDIIMIPSAHNHVSYALNHHGESAKPLDELLTNCTEQVLDIQGDGDAQSSLILIECK 117 Query: 94 LQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 R L+ LP L + + I L E+ G A+ + + Sbjct: 118 YDKEMIRPLLSVLPTILPEINDESDGRFEVIDVEIRLLTLEAEHERMGKTAIINHWASIM 177 Query: 153 FTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R +I + + L + P L + M E P W++ LA +A MSR+SFA Sbjct: 178 MIECLRVYIESLPEATDSWLKAMKDPFLTKALVAMHENPSQNWSIHELAEVAGMSRSSFA 237 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 Q F+DV G PL L RL++AA+ + + I+E VGYAS+S+F +AF R +G + Sbjct: 238 QRFKDVVGMPPLTYLIDYRLRLAARYLRLQQNSISRISELVGYASDSTFSQAFKRVYGIS 297 Query: 272 PGEYRERVRQ 281 P YR++ ++ Sbjct: 298 PKAYRQQYQK 307 >UniRef50_B8ESK8 Transcriptional regulator, AraC family n=8 Tax=Proteobacteria RepID=B8ESK8_METSB Length = 304 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 8/273 (2%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS +L G + L QL AGE VI +T GA +E + Sbjct: 23 DLLSHVLAQIRLTGDQVFSRALAEAEQLDIDAGEAHVI---VVTAGALHIESDNQTRAVI 79 Query: 62 RPGNVVLLPQN-SAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 G++VLLP+ RL T +VC S R + +LP+ + + + + Sbjct: 80 DTGDLVLLPRGPGESRLVASHQRVTLVVCRFWFDPDSLRSMIFALPQRIHIQRADAA--- 136 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 W+ + FL E+ PG + S+I +R W+ + T L L R+ Sbjct: 137 GWIDGMLRFLMIEAGDIQPGAALMISRIIDLLVIRVLRSWVHKGQT-SGWLGGLTDARIA 195 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 ++ + E P W++ +LA + MSR+SF + F + G +PL + RL +A M ++ Sbjct: 196 RSLKAIHEKPMQRWSINALADLVGMSRSSFCERFTALVGRSPLRYQNEWRLALARDMLAK 255 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 V I +GY SE++F +A+ + FG +P Sbjct: 256 RDARVGEIGLRIGYESEAAFSRAYKKLFGHSPR 288 >UniRef50_C0XNW0 AraC family transcriptional regulator n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XNW0_9CORY Length = 316 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 124/305 (40%), Gaps = 32/305 (10%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPG 64 + L G N DW L + + +H +T+G+ L LR G Sbjct: 8 AHFLRQLRMSGVFYCNTTARGDWGLR-MPVDPQCLSFHVVTEGSCWLISDGIPKLQLREG 66 Query: 65 NVVLLPQNSAHRLSHV----------------------------DNESTCIVCGTLRLQ- 95 +V L+ H LS D T ++CG + Sbjct: 67 DVALVQLGREHMLSASPDRTVAPRVDQLPQRYLSENYSIVNVGCDGSFTRLLCGMVSFDA 126 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + +LP + +N + + + + + L E + G +A+ ++ Sbjct: 127 PDVHNIVQALPPVVSARGMN-LNDASSVVKLVGLLADELSADRLGGEAVAVRLADIIVVQ 185 Query: 156 AVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R+W + ++ E +++ L P +G V+ + + P W + +A I+ MSR SF + F Sbjct: 186 IIRKWFYEESSFEPGLIAGLADPAIGRVLHAIHDEPEKPWAIADMAKISAMSRTSFIEKF 245 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 R+V G P A +T R+++A P+ V+ SV Y+SES+F KAF R G +P Sbjct: 246 REVVGVAPAAYVTNWRMEVAKTRLIETNEPIAVVGSSVSYSSESAFSKAFARSVGISPSA 305 Query: 275 YRERV 279 +R+ Sbjct: 306 FRQAA 310 >UniRef50_B1KNX2 Transcriptional regulator, AraC family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KNX2_SHEWM Length = 297 Score = 212 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 127/297 (42%), Gaps = 27/297 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M AL+ LL TI ++ W L+ +H ++ G A L + Sbjct: 1 MSALNGLLSSFHLNATIFHRSLVCDPWSTDTSGSGLA--SFHLISSGKAFLFCDDYQAEP 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC--------------------IVCGTLRLQHSARY 100 L G++V+ P +S H +SH ++ T ++CG + + + Sbjct: 59 LTAGDLVIFPHDSPHIISHSPDKQTAKETDGFVAYPFSDNTPHSAGLMCGYFDFKEDSSH 118 Query: 101 FLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 + + LP + + + L I L E D + S++C FF +R+ Sbjct: 119 PVIAQLPSCILIKSQQNQGV---LASIIESLILEVTLGAQASDIILSRLCEVFFLSLLRQ 175 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 A+ N++ + L ++ V+Q + W + SLA++ SRASF F++ Sbjct: 176 LSAEDNSQMGLFRALQDTKMAKVLQAIDSNLAAPWDLNSLANVGGYSRASFINHFKNYLD 235 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TTP L++LRL A + R V+ +A VGY+++ SF KAF R FG PG R Sbjct: 236 TTPQEYLSQLRLTKAKKQLIRGDA-VLKVALDVGYSNDVSFAKAFKRYFGYGPGVCR 291 >UniRef50_C8QBD0 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QBD0_9ENTR Length = 322 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 129/306 (42%), Gaps = 29/306 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IF 59 MD LS +L L + Q + G+ W + + S +++ A+ +G + + Sbjct: 1 MDLLSDVLQLLSAQSYVTTGQTTGTSWSMRYPG--FSGMKFMAVRKGKIWFRLEADDNWR 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVD----------------------NESTCIVCGTLRLQH- 96 L PG+ V++ +++ ++ E + ++ G + + Sbjct: 59 ALLPGDGVIITRSAPFIMASDPALSPVAAESVPYIRKNGLADYGGEDSLLLAGKMEIDPI 118 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 SA L LP + + + S + L + L ES S PG + + Sbjct: 119 SAEQLLNVLP--VVIPLHSDSESSSTLSWLMSRLHDESLSNRPGSALAGNHLMHLVMIEG 176 Query: 157 VREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 R W +++ + L R+ + + P +W + LA+IA +SRA FA+ F Sbjct: 177 FRSWVLSEAAQLHGWMGALRDARIMRAVTAIHAEPAKSWQLMELAAIAGLSRAGFARCFS 236 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +GT+PL LT R+Q+A++ T P+ +A +GYASES+F F R +G P + Sbjct: 237 ATTGTSPLNYLTHWRMQLASKALRLSTEPIKHLAYRLGYASESTFSTVFRRVYGVAPSAH 296 Query: 276 RERVRQ 281 R R Sbjct: 297 RAAWRD 302 >UniRef50_Q7UL84 Probable araC family transcription regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UL84_RHOBA Length = 454 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 19/293 (6%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDW-----QLPHGAGELSV----IRWHALTQGAAKL 51 MD L+ L + ++++ G W +P + ++V + ++A+ G + Sbjct: 14 MDVLADFLSVAGMVAHLEESLSGGKTWVHQVASIPRSSPTVAVAAQRLSFYAVVSGQIRF 73 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF-LTSLPETLF 110 E +L G+ + + HRL +E T + G + + + +L T+ Sbjct: 74 TSAAAE-HSLNSGDTIFAIEGQEHRLESR-SEDTRVTTGQIEFTSGSIGLSVLNLASTII 131 Query: 111 LAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE---WIAQVNTE 167 + + S+ E + L E G ++ I F A+R + Sbjct: 132 VRSNDESLSS----ELVRRLGTEIEEQRGGWKSVSLGIVNALFIAALRSGGNCSKSNSES 187 Query: 168 KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLT 227 L + +GA ++ M E P H WTV LA+ +SR++FA F+ ++G PL LT Sbjct: 188 NGWLRAMADDEIGAALKLMHERPEHRWTVAELANELSVSRSAFAARFKTITGRPPLEYLT 247 Query: 228 KLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 RLQ AA + + + + GY SE++F KAF REFG +PG+ R + + Sbjct: 248 WWRLQRAAARLRTGDVTLTEVTRNSGYQSEAAFGKAFRREFGISPGQLRRQAK 300 >UniRef50_A4XUD0 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XUD0_PSEMY Length = 289 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 8/285 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS QG + + L G + H + +G + P Sbjct: 1 MDVLSEFFERTTLQGRLFFAGAVEGTLVLDKPPGMAFI---HVIERGGVDMVQPGLPRVA 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 + +V+ P ++L D ++C + + S + P L V Sbjct: 58 INEPSVLFCPSTCCYQLHVRDPAGLELICASFQFGRSGQQPF---PLGLLETLVFPLAAL 114 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L I L E R+ PG + + F L VR + Q +L L RLG Sbjct: 115 EQLGPVIATLVNEFRNPAPGRSKALNLLFEYVFVLLVRRAVNQGRITSGLLFALQDGRLG 174 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + + P W+VE LA +A MSR+ FA LF +V G P+A +T R+++A M Sbjct: 175 PALLCIHQEPAIQWSVERLADLAKMSRSKFAALFSEVMGMAPMAYVTAWRMKVAQDMMRD 234 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RERVRQLAP 284 +P+ +++++VGY+S++SF + F ++ G PGE+ R+ V + P Sbjct: 235 G-VPIKIVSDAVGYSSQASFSRTFAQQVGLPPGEWLRQAVHEPPP 278 >UniRef50_B1K331 Transcriptional regulator, AraC family n=12 Tax=cellular organisms RepID=B1K331_BURCC Length = 348 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 29/307 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IFT 60 D S +L L + G W + A + I++ A+ +G + + E Sbjct: 17 DPFSDILRLTNAESLATGGFSAGGAWAVRFPAPDK--IKFFAVVKGTCWVSIDGEETPIR 74 Query: 61 LRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQHS 97 G+V LL A L+ + + G + L Sbjct: 75 FGSGDVGLLTAKRAFVLASDPCVPPVDAMALFSGAGRSTVKLGNGDEFAQIGGHVLLDPV 134 Query: 98 ARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 L+ LP + + S + +R + L +E + +PG + +Q+ F Sbjct: 135 TGSLLSDVLPPWIHVPAA--SPQAVKVRWLLEKLVEERAADLPGAQLVSAQLSQLLFIQI 192 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + + L +PR+ ++ M P +W ++ LA+ MSR +FA FR Sbjct: 193 LRAHLKTSASLTGWLRAFGNPRIAPALRLMYGDPARSWHLDELAAACAMSRTTFASHFRA 252 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G PL L + R+++A + E +PV ++A+S+GY+SES+F AF R G +P YR Sbjct: 253 SAGVAPLTYLGEWRMRLAERRLRDEDIPVALLAQSLGYSSESAFSHAFKRMSGHSPTAYR 312 Query: 277 ERVRQLA 283 VR A Sbjct: 313 HVVRTAA 319 >UniRef50_Q392E1 Transcriptional regulator, AraC family n=32 Tax=Bacteria RepID=Q392E1_BURS3 Length = 349 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 127/315 (40%), Gaps = 43/315 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D +S LL+ G + + + L G ++H + +G L +G+ L Sbjct: 29 DLVSELLLGMRLSGVQYRRIQVARPFGLNFGHVT-GRAQFHFVGRGPVLLRDASGDTMRL 87 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGT------------------------------ 91 G+ +LLP H L + + G Sbjct: 88 EAGDAILLPHGGMHALVSDPDAPCREINGFEVAKICDTVASVASAGVSPASCATTEPGAG 147 Query: 92 --------LRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 + L + + ++PE + + + Y +R + +++E+ SA G Sbjct: 148 DALIFSACMELDLGGMQPLVGTMPEFMHVGTL--LARYPEIRPMLDAMEREACSARAGFA 205 Query: 143 ALCSQICATFFTLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + +++ VR W+ + L P+LG I + PG W+V LA+ Sbjct: 206 GILARLADVVAAFIVRGWVECGCGDATGWVQALREPKLGRAIVALHRDPGRNWSVAELAT 265 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 A +SR+ FA+ F +G TP+ LT+LR+++AAQ +R+ + +A +GY S ++F Sbjct: 266 EAGVSRSVFAERFLAATGMTPVRYLTELRMRLAAQWITRDHETIEAVAYRLGYGSLAAFS 325 Query: 262 KAFVREFGCTPGEYR 276 +AF R G PG R Sbjct: 326 RAFKRVVGKPPGAVR 340 >UniRef50_A7JV94 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JV94_PASHA Length = 274 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 12/284 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLG--SDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MD+L+ L + + L + E + H + QG L Sbjct: 1 MDSLTHLFTQFQFRTDLFHLGQLCQIGSFN------EENKGYLHFVRQGRFILNQAAERP 54 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 T+ ++ P N H L +D+ I C R LT TL + Sbjct: 55 ITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLT---HTLHNIVILELA 111 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 +Y L + E G A+ +CA F R+ + + + +L L + Sbjct: 112 QYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQTGLLKGLADKQ 171 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 LG V+ + P W VE LA++A MSR+ FA F+ G +P+ LT RL +A + Sbjct: 172 LGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDYLTNWRLAVAQHLL 231 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 + +PV ++AE VGY+ ++ + F+RE G +P E+ + ++ Sbjct: 232 QKG-IPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES 274 >UniRef50_C7PXM7 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PXM7_CATAD Length = 306 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 84/310 (27%), Positives = 128/310 (41%), Gaps = 34/310 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDA+S L+ + G +D C+L L + + +H L G E+ G Sbjct: 1 MDAISTLIRMARLDGVVDVRCLLTGSHVLDNPP-TSGRVPFHLLLDGYCTAEI-DGHTID 58 Query: 61 LRPGNVVLLPQNSAHRL------------------------SHVDNESTCIVCGTLRLQH 96 LRPG+V++LP+ HR+ S D + + CG Q Sbjct: 59 LRPGDVLVLPRGGEHRVRVTTEAPAVPADLRQGASVATLASSSADASTIDLFCGHYTYQP 118 Query: 97 SARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A L LP+ L + + LR ++ E+ PG AL + +C L Sbjct: 119 GAGELLIAGLPDILH--ASFGTGPDSPLRLLGELMRSEAGLDGPGAGALLASLCEALLAL 176 Query: 156 AVRE----WIAQVNTEKNILS-LLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 +R A + + P L AVI ++ P WT+ LA +A +SRA+ Sbjct: 177 VLRGDGTGHPATTTLPTPWTAVAVTDPGLRAVIDAVVHRPREPWTIAVLAHLAGVSRATL 236 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F +G LT++R+ IAA + + + +AE+VGY S S+F KAF G Sbjct: 237 VRHFSAATGMGVADFLTRIRMTIAADLLTTTDRSLDAVAEAVGYQSTSAFGKAFRTATGT 296 Query: 271 TPGEYRERVR 280 TP R VR Sbjct: 297 TPSRLRRAVR 306 >UniRef50_Q0AK28 Transcriptional regulator, AraC family n=1 Tax=Maricaulis maris MCS10 RepID=Q0AK28_MARMM Length = 320 Score = 210 bits (534), Expect = 5e-53, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 31/292 (10%) Query: 14 QGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNS 73 GT+ V+ + W + + + V +T G A L T E L+PG++ LL + Sbjct: 25 SGTLYCQGVMTAPWGIDVPSLDDQVGLL-IITAGTAHLATATDETRLLQPGSLTLLTRGQ 83 Query: 74 AHRLSHVDNES---------------------------TCIVCGTLRL-QHSARYFLTSL 105 +L+ S T +++ + R L Sbjct: 84 PMQLASAPGASLTALEDLPVEPVTRRFERVFHGGGGAETRFTFALMKIEDPTTRQLFREL 143 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN 165 PE++ + + VE WLR + + +E+R PG + L +++ +R W+ Sbjct: 144 PESIEVNGWDALVE-TWLRSTVQLISEEARLMRPGSETLITRLADILVIQLIRRWLEHAG 202 Query: 166 T-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 E+ L+ L P LG + + P W+++SLA IA MSR++F F + T P+ Sbjct: 203 PGERGWLAALHEPGLGRALAAIHTDPAINWSLDSLAGIAAMSRSAFCARFTTMLDTAPMK 262 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +T+ RL A + + + I+E GY S+++F +AF + +G PG R Sbjct: 263 YVTRHRLARAREALVQTQDSLADISERYGYGSDAAFSRAFKKYYGMAPGRVR 314 >UniRef50_A7JVV0 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JVV0_PASHA Length = 298 Score = 210 bits (534), Expect = 6e-53, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 34/303 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L RLL I C L DWQL + H ++ G A L+ G+ Sbjct: 1 MDILDRLLAFAQISAGISVKCQLQGDWQL-ENPHQTGQAIAHIISYGQAYLQH-NGKTHH 58 Query: 61 LRPGNVVLLPQNSAHRLSH-------------------------VDNESTCIVCGTLRLQ 95 L+ G++V P+ + H L + + C Sbjct: 59 LKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAGLSQSECDMFCLHFYYD 118 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 H A + SLPE + V L+ + L+QE+ + V ++ + + T+ Sbjct: 119 HQAE-LMESLPEMIVF-----QVAETPLKAMLDILKQEAETPNLAVKSVVNSLAVVILTM 172 Query: 156 AVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +RE + N + IL L +I+ +L P H W V+ +A+ H+SRA +LF Sbjct: 173 ILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMAAFIHLSRAQLVRLF 232 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 +P A + K+RLQ AA + + V+ IA S G+ SES F AF +++ TP + Sbjct: 233 NKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSESHFITAFKKQYCVTPSQ 292 Query: 275 YRE 277 YR+ Sbjct: 293 YRQ 295 >UniRef50_B5GM94 Helix-turn-helix domain-containing protein n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GM94_STRCL Length = 324 Score = 209 bits (532), Expect = 9e-53, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 105/292 (35%), Gaps = 23/292 (7%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP--TGEI 58 MD LL G L W L + + +G + GE Sbjct: 1 MDPFDDLLRGIRADGAAFSRQELSPPWALRFAEAGETELTLATPLRGEGWICSEEGGGEP 60 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNES------------TCIVCGTLRLQHS-ARYFLTSL 105 LR G+ +++ L+ T + GT R++ + +R L Sbjct: 61 RPLRTGDALIVRGPQPRLLADRPAARSGGPAPLPVTGRTTLFVGTYRVRGAVSRQLFGVL 120 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN 165 P + ++ + L + P + ++ +R W Q + Sbjct: 121 PPLMVMSGDGCP-------AVLDLLDALAGGVPPERQVVQDRLLDWLLVCTLRGWFDQPD 173 Query: 166 TEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 L L +G ++ M + P WT+ +LA+ + +SR + AQ F + G PL Sbjct: 174 GPPTGWLGALTDDTVGPALRAMHDAPERPWTLAALATASGVSRTTLAQRFTRLVGRPPLT 233 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 LT R+ +AA + + T + +A VGYA F AF R G +P YR Sbjct: 234 YLTDWRMALAADLLTESTATLAAVARQVGYADAFGFSAAFKRVHGVSPSAYR 285 >UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AR01_TSUPA Length = 289 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 119/278 (42%), Gaps = 11/278 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS LL +G H A V+ + A+T G + + + L Sbjct: 17 DALSELLRSVRLRGVRAARFARAH--GFTHRASGRRVV-YLAVTAG-LTVTVADQQ-VGL 71 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEY 120 PG+++LL + H + T V G + A L LP + A + Sbjct: 72 NPGDLLLLARGDDHSVRGRG--ETEWVRGEFDVDSPVADPVLAVLPPVIRCAADDPG--S 127 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRL 179 WL ++ L E+R PG D + ++I F A+R W A +T L+ + + Sbjct: 128 QWLPLSMDLLLDEARLPRPGGDVMSARILDLLFIHALRHWAATGSTSRPGWLTAAMDQHI 187 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 G + + P WTV LA IA +SR++FA F + G P + RL AA++ Sbjct: 188 GPALTAIHAHPERQWTVAELARIALLSRSAFAARFTRLLGVAPAGYVADRRLDRAAELLR 247 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 LPV + +VGY SE+ F +AF R FG P +R Sbjct: 248 DSALPVGDVGRTVGYGSEAGFSRAFARRFGVPPRAWRR 285 >UniRef50_A9CGU4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGU4_AGRT5 Length = 321 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 113/304 (37%), Gaps = 26/304 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS ++ L P + K W + + A + + + GAA + + + Sbjct: 14 MDPLSDIVDLLRPSAAVSKPISGKGRWGVRYRAHDAPG--FALVLAGAAWVMIEGRDPLR 71 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIV---------------------CGTLRLQHSAR 99 L G+ +LLP A L V G+ + Sbjct: 72 LGRGDFLLLPTTPAFSLCSETGVDCVPVEPQDRAVRHGEQEGMPDFLALGGSFAFERINA 131 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 L SL L P + L I L +E PG + + ++ A+R Sbjct: 132 SLLLSLMPGLIYVPAAEKR-ASRLARLIELLSEECAGEDPGKELIIRRMLEVLLVEALRR 190 Query: 160 WIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 A ++ + P L + M +WTV LA IA MSR++F+ F ++ Sbjct: 191 PDAGNVAIPAGLVKGMRLPGLARALSAMHADVRASWTVAELAGIAGMSRSAFSARFLEMV 250 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RE 277 G P+ L + R+ +A R + IA+ +GY S S+F AF R G PG + R Sbjct: 251 GCAPIEYLARWRMALARDSLIRGVKSLDHIADEIGYESASAFSTAFRRRMGIAPGSFARA 310 Query: 278 RVRQ 281 R+ Sbjct: 311 NDRR 314 >UniRef50_A0KNU2 Transcriptional regulator, AraC family n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KNU2_AERHH Length = 267 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 20/260 (7%) Query: 39 IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAH-------------------RLSH 79 + +H L +G ++ G+ LRPG+++LLP H L Sbjct: 1 MPFHLLMKGEIRVSTAQGDDVVLRPGDLLLLPGGEPHTIWREGDALTLAEPGDGLLPLRG 60 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 + +CG R Q R L + P+ S L + + QE Sbjct: 61 DGGDQVEFLCGEYRYQGPLRPLLLDALPSPLCIPLLASESQQALSLVLSLIHQELLREQQ 120 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G A+ + + + +R + + ++ L PRLG +Q ML P H W+V+ L Sbjct: 121 GSGAVLTALSQVLLAMGLRAHASDPHGALGLVGALQDPRLGRSLQAMLADPAHPWSVDEL 180 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET-LPVVVIAESVGYASES 258 A++A MSRA++ + FR G + + ++R+ AA++ LP+ +A+ VGY SE+ Sbjct: 181 AALAAMSRATYFRHFRQRLGCSVWEFMVRVRMVRAAELLRHPDQLPLGEVAQRVGYQSEA 240 Query: 259 SFHKAFVREFGCTPGEYRER 278 SF KAF + G PG +R++ Sbjct: 241 SFAKAFKQSSGMAPGRFRQQ 260 >UniRef50_D0XYL8 Transcriptional regulator, AraC family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XYL8_9CAUL Length = 322 Score = 207 bits (527), Expect = 4e-52, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 117/305 (38%), Gaps = 25/305 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS ++ L P + K W + + A ++ + + +G + Sbjct: 1 MDPLSDIITLLRPSSIVSKPITGRGRWGVRYAAHDMPG--YTIILKGRCWIAFEGQAPMA 58 Query: 61 LRPGNVVLLPQNSAHRLS------------------HVDNEST---CIVCGTLRLQHSAR 99 L G+ +LLP A L H D E + G R++ + Sbjct: 59 LEEGDFLLLPSTPAFVLGSHPDVDGPSRDPSDAPVRHGDQEGEAQFESLGGAFRIERANA 118 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR- 158 L +L + P + L I + QE PG D + ++ A+R Sbjct: 119 PLLLALMPRMIHIPASEGRTAR-LGTLIGLIVQECAREDPGKDMILQRLLEVLLVEALRW 177 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 +A + +L + P L V+ M WTV LA +A +SR++FA F + Sbjct: 178 RPVAGDDARTGLLRGMRDPALARVLSAMHSDVRAHWTVAGLAKVAGLSRSAFAARFGEAL 237 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G P+ L + R+ +A + IA+ +GY S S+F AF + GC+PG + Sbjct: 238 GCGPIEYLARWRMALAKDALIGGAKTLDRIADEIGYESASAFSTAFRKRLGCSPGRFARA 297 Query: 279 VRQLA 283 +A Sbjct: 298 GDAVA 302 >UniRef50_A0Z8C5 Transcriptional regulator, araC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z8C5_9GAMM Length = 337 Score = 207 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 119/333 (35%), Gaps = 59/333 (17%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS LL I +G W + + +H + QG L + Sbjct: 1 MDALSDLLQTIQLSAKIYVCRAVGGPWNMQVHYRPQGI--FHTVIQGQCYLREGGSDDLV 58 Query: 61 L-RPGNVVLL-----------------------------------------------PQN 72 L + G+ V P Sbjct: 59 LLQAGDGVAFPTGGAHWISDSPGSQDLVAENVVKVTGDDGLLLLKTGEVTVSASDSAPWG 118 Query: 73 SAHRL-------SHVDNESTCIVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLR 124 + R+ S D++ T ++ G L S + FL SLP S + + Sbjct: 119 NDPRMAPSAGGDSPGDDQVTILLSGALSYDSSIDHPFLKSLP-CFIQTSSKSSGDLHRHD 177 Query: 125 EAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQ 184 L +ES + PG + + F +R + ++ ++ L P +G + Sbjct: 178 VLTNLLIEESFGSYPGKRLMVDHLAEALFVQLLRVHMRKMKQSNGFMAALSDPHIGVALN 237 Query: 185 QMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLP 244 + WTVESL A M R SF Q F ++ G+TP + LT RL A Sbjct: 238 LIHTETDQKWTVESLCKAAAMGRTSFTQKFENMVGSTPKSYLTSTRLMKAKSKLQNSNDS 297 Query: 245 VVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 ++ IAE GYASE++F KA + F TPGE R+ Sbjct: 298 MLSIAEGAGYASEAAFGKAIKQRFNRTPGELRK 330 >UniRef50_C7Q7L5 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q7L5_CATAD Length = 331 Score = 206 bits (525), Expect = 6e-52, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 116/303 (38%), Gaps = 30/303 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGA-AKLEMPTGEIFT 60 D L L + + + V G DW + A + + + +G + TGE Sbjct: 21 DPLCAALAVADARAAMSGAFVAGGDWAVRLHAPDRLKVN--CVMRGTPVLVRQDTGEQLR 78 Query: 61 LRPGNVVLL-----------PQNSAHRLS------------HVDNESTCIVCGTLRLQHS 97 L PG+V++ P H E V G + L Sbjct: 79 LAPGDVIVSDGALPYVLCSDPSIEPHPSGWLATDPRTGFRRIGHGEDVMCVAGHVDLSRD 138 Query: 98 ARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 L ++LP L + + E LR I L E + PG A I F Sbjct: 139 GGGLLRSALPNLLHIP--GDAPEATPLRRLIEQLLDEMTTRRPGAPAAMDHIAQLIFLHV 196 Query: 157 VREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R + T L L PR+ + M P W +E LA A +SR +FA FR Sbjct: 197 LRISLTTTATLPPGWLRGLADPRISPALHLMHRDPARPWRLEELAQAAALSRTAFAVRFR 256 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G PL L R+ +AA+ R+T PV V+A VGY SES+F AF R G +P Y Sbjct: 257 ATVGVPPLTYLLTWRMSLAARALRRDTTPVAVLAREVGYGSESAFSNAFKRAVGTSPRNY 316 Query: 276 RER 278 R R Sbjct: 317 RNR 319 >UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XTB5_KLEP3 Length = 301 Score = 206 bits (525), Expect = 6e-52, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 137/302 (45%), Gaps = 27/302 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS LL L AP+ ++ +C G WQ H V+ WH + +G +L + G+ Sbjct: 1 MDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLNV-GGQTHH 59 Query: 61 LRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQH 96 LR G+VVLLP S H + + ++CG Sbjct: 60 LRAGDVVLLPHGSPHLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLCGEFYFGP 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + + + L + + L + L +ES + PG A+ + T L Sbjct: 120 HVSWLFSEASTLIHL-HTDAREDCPELDALLNILVRESLAQRPGGSAIVRSLGDTLLVLL 178 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + + +L L+ RL + ++ P WT+ES+A+ A +SRA+FA+ F Sbjct: 179 LRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATFARHFAR 238 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLP-VVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V TP A L++LR+ +AA++ E + VIAE G+ S +SF K F +G TPGE+ Sbjct: 239 VYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYGVTPGEW 298 Query: 276 RE 277 R Sbjct: 299 RR 300 >UniRef50_B0SFV6 Transcriptional regulator, AraC-related n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SFV6_LEPBA Length = 298 Score = 206 bits (524), Expect = 8e-52, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 124/302 (41%), Gaps = 28/302 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + + + + +H +TQG+ + +I Sbjct: 1 MDLLSDILFSAGWKNDLLSKGQIFQSFGFHFPCERSGG--FHVVTQGSCYARI-GKQIIP 57 Query: 61 LRPGNVVLLPQNSAHRLSHVD---------------------NESTCIVCGTLRL-QHSA 98 L+ G+++ + + H L N T V + Sbjct: 58 LQKGDLLFITRGVHHELLSDPKAKVVTIERFLHEKNNQKIDQNPVTTFVSVRYEVPDGPV 117 Query: 99 RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L LP+ + + P +++ L + I L +E + G D + ++ +R Sbjct: 118 HPLLLELPDYILI-PYASIQKHHSLEDFIQILSKELELNL-GTDLIVQRLTDIMLYYMIR 175 Query: 159 EWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 W+ Q N+ + + ++++ WT+ESLA +SRA+ A FRDV Sbjct: 176 IWLQQEENSPVGWIKAFHDKTVLYALEKLHNAFSKEWTIESLAKETGVSRANLANKFRDV 235 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 G P+ L KLR++ A Q+F + + + IA++VGYAS SF KA+ R +G +P + Sbjct: 236 LGIPPMEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGYASAFSFSKAYKRIYGNSPSREWK 295 Query: 278 RV 279 RV Sbjct: 296 RV 297 >UniRef50_C5CWM4 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CWM4_VARPS Length = 308 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 122/299 (40%), Gaps = 29/299 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD L + + + G+ W + GE + R+ + +G+ LE P + Sbjct: 1 MDPLDDVFAAMRVRSALYARLEAGAPWGVSLAGGESA--RFGLVVRGSCLLEAPGVAQPV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNESTC------------------------IVCGTLRLQ 95 L G+ +L + + L N T ++CG Sbjct: 59 PLAAGDCYVLAHGTPYVLRDHPNTPTVSCASVVRDRIGGVVELGGTGTAASVICGWFHFD 118 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A L L L + + L+ + L E+ G L S++ F Sbjct: 119 QRAARPLLDLLPVLLHVKMEEARALA-LQGTLQLLAMETGEPGLGSGLLVSRLADIVFVQ 177 Query: 156 AVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 AVR +A ++ L+ L R+G ++ M + WTVE+LAS A +SR++FAQ F Sbjct: 178 AVRAHVAAHGESQTGWLAALADARIGPALRAMHKDMARDWTVEALASTASLSRSAFAQRF 237 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 R+ G PL LT+ R+ A M + V IA +VGY SE++F KAF R G PG Sbjct: 238 RERVGQAPLEYLTQWRMFKAGNMLGQGHAAVGAIAGAVGYESEAAFSKAFKRRMGMAPG 296 >UniRef50_C8NCJ5 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCJ5_9GAMM Length = 313 Score = 203 bits (517), Expect = 6e-51, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 28/300 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D++ RLL L Q I+ C L + + + H +H L +G+ + G + Sbjct: 11 LDSIDRLLELLDLQTRIEVYCHLQAPFHMVHEPDTPGTAWFHLLLEGSCTIAT-GGHQYA 69 Query: 61 LRPGNVVLLPQNSAHRLSHVDN---------------------ESTCIVCGTLRL-QHSA 98 L+ G+ +L S H + + E ++CG ++ +A Sbjct: 70 LQAGDFFMLTAGSQHTIYAGEGNGSFREDTRNGLLQLCNDSGGEPLRMLCGFYQVRNRAA 129 Query: 99 RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L LPE L ++ + L + E+ + G + +C LA+R Sbjct: 130 VSLLGILPEPLLVSL----GDIPQLPALCTLIHHEALTRHEGSLTIIRALCEILLLLALR 185 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 I+++ + + +L P L + ++L P +T E LA IA MSRA+FA+ F+ + Sbjct: 186 -HISELPEKHRLTALFSDPGLARALARILADPFAPYTTEGLAEIACMSRATFARKFQQAA 244 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G+ + L++ AAQM V +AE GY SE++F AF +FG TP YR + Sbjct: 245 GSGVQTFIRTLKMSAAAQMLRDSNHAVSRVAEETGYQSEAAFINAFKAQFGITPARYRRQ 304 >UniRef50_B2T994 Transcriptional regulator, AraC family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T994_BURPP Length = 279 Score = 203 bits (517), Expect = 6e-51, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 10/282 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS L+ + Q + N L + I H L +G ++ + G + Sbjct: 4 DQLSALIERFSLQTGVFYNGTLCGI--ARFEEEQQGYI--HLLRRGRMRVRLSDGTTLPV 59 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVEY 120 ++ P+ AHR + E + C ++R+Q +T ++P+ + L E Sbjct: 60 SGPCLMYCPRALAHRFEVEEEEEVELTCASVRIQSGFNNPITRAIPDIVIL----QCAEL 115 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 + + L E+ + G A +++ +R I+Q +L+ L PR+ Sbjct: 116 PHAKPLLDILVAEAATYQDGRVAALNRLFELVIIQVLRFLISQGKASSGLLAGLADPRIA 175 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 ++ + E P AWT+E +AS A MSRA FA FR+V TPL +T RL +A QM Sbjct: 176 LALEAVHEHPESAWTIELMASTAGMSRARFADHFRNVVQLTPLNYVTDWRLTLAQQMLLA 235 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 +IA VGY S S+ +AF R G +P + + R+L Sbjct: 236 GR-STQLIASEVGYESSSALARAFRRRLGFSPVAWLDSQRKL 276 >UniRef50_A4W931 Transcriptional regulator, AraC family n=2 Tax=Enterobacteriaceae RepID=A4W931_ENT38 Length = 340 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 33/307 (10%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 +S LL+ +G + GS++ + + +H + G A L G + L+ Sbjct: 26 LISELLLEMRLRGVQYRRLQTGSEFGIGFSNRQ-GHAYFHYIAVGTALLRTNDGALHELK 84 Query: 63 PGNVVLLPQNSAHRL------------------------------SHVDNESTCIVCGTL 92 G++V +PQ H+L S ST + G + Sbjct: 85 AGSMVFMPQGEEHQLISDVGCAIHHIDTLGSAPLGEAVSGINTCPSTHPTPSTVLFYGCM 144 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 L L + N + Y L + ++ E S G + +++ Sbjct: 145 EFDLGGMQGLGKLMPQAIVVEANEKI-YPGLVPILGAMKFEICSGRAGFAGILARLAEVA 203 Query: 153 FTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 + VR WI + + +++ L PRL I + W+V LA+ +H+SR+ FA Sbjct: 204 AAMIVRGWIENGSEKAAGLIAALRDPRLARAILTIHRDTSREWSVAELAAQSHVSRSVFA 263 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G P ++R+++A + + + +A +GYAS+++F +AF R G Sbjct: 264 ERFTSIIGIPPQRYAREVRMRLAGHWIIHDKISIDTVALRLGYASQAAFSRAFKRINGYP 323 Query: 272 PGEYRER 278 PG R+R Sbjct: 324 PGAMRQR 330 >UniRef50_Q39N64 Transcriptional regulator, AraC family n=11 Tax=Burkholderiales RepID=Q39N64_BURS3 Length = 333 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 131/308 (42%), Gaps = 31/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LSR + L G ++ C G+ W + + I +HA+ +G A LE P G + Sbjct: 6 DWLSRFMALVTVTGKLEIRCAFGAPWAITYERSPACEIPYHAVLRGRAILENPDDGTVRE 65 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-----------------------ESTCIVCGTLRLQHS 97 L G++VLLP S H L E ++CG + Sbjct: 66 LGGGDLVLLPHGSPHVLHDGSGLPPVPAIKRPGGHVFIGENAGTGERLDMLCGRFVVAPP 125 Query: 98 ARYFLTS-LPETLFLAPVNHSVEYNWLREA------IPFLQQESRSAMPGVDALCSQICA 150 + LP L + S + L + ++ ES G A+ + + A Sbjct: 126 HDRLIRRHLPPDLVVRAATDSRTPDALAATARLTALVELMRAESLEQQLGGLAILNALSA 185 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F LA+R +L+L PRL A I ML+ P WT+ LA++ MSRA+F Sbjct: 186 ALFALALRAISESGQAPTGLLALAGQPRLAAAIVAMLDDPAKPWTLPELAALCSMSRATF 245 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F+ G + +LT +R+ +AA + + ++ VGY S ++F + F R G Sbjct: 246 MRHFQSTLGHSAADLLTDIRMSLAANALRQPSASAEAVSADVGYQSVAAFRRVFTRWAGM 305 Query: 271 TPGEYRER 278 TPG++R + Sbjct: 306 TPGDWRRQ 313 >UniRef50_B7VTG6 Transcriptional Regulator, AraC family n=7 Tax=Vibrionales RepID=B7VTG6_VIBSL Length = 279 Score = 202 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 14/281 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+L+ + + + + L A + H L G L E Sbjct: 1 MDLLSQLMEHFSIRTGVFYSGNLCG--VSSFNAQQGKEGHLHVLRAGELTLSGAHMECRQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVE 119 L ++ LP ++ H + V E +VC + + L++LP+ + + + Sbjct: 59 LSQPCIIYLPNSTPHVIEGV-GEGAELVCANVEYRSGQMNPLLSALPDMIVIPF----ED 113 Query: 120 YNWLREAIPFLQQESRSAMPGVDA-----LCSQICATFFTLAVREWIAQVNTEKNILSLL 174 L I L +ES A G + L ++ L R I Q + + S L Sbjct: 114 APNLMPVIEVLFRESGQASSGQQSSGQQYLMDKLSDALMALIFRHLIEQQKIDSGVFSAL 173 Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 HPRL AV+ + +P ++V +AS+A MSR F + F+ G TP + K R+ +A Sbjct: 174 AHPRLAAVVTAIHRLPARHFSVAEMASLAAMSRTQFIEAFKREVGETPGDYVQKWRVSVA 233 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + + P+ +A+ VGY S S F +AF G +P ++ Sbjct: 234 QSLLLQ-NKPINWVADEVGYNSYSGFSRAFQHVSGVSPRQW 273 >UniRef50_A0NP18 AraC-type DNA-binding domain-containing protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NP18_9RHOB Length = 266 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 32/282 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVL-GSDWQLPHGAGELSVIR--WHALTQGAAKLEMPTGE 57 +D LS L+ Q I GSD L + +R + + G L Sbjct: 13 LDRLSSLIDRLRVQVDISLTADADGSDSNLRIYDSPVRGLRLVFCPVRDGKGTL------ 66 Query: 58 IFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHS 117 ++ T +V + + R +++LP+ + + Sbjct: 67 ------------------CGMEPASDETPLVAARITISGVGRQLISALPDCISV----QM 104 Query: 118 VEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHP 177 E +L + L +E+ G A ++C +R + + + +L+ L +P Sbjct: 105 TEDPFLSAVVTPLIEEATMPRCGGQAAFQRLCEVVVIRLLRHAMEEGKADTGLLNGLANP 164 Query: 178 RLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQM 237 R+ A + + E+PG WT+E LA A MSR FA F+++ GTTP+ L+ RL IA Sbjct: 165 RIAAALVAIHEVPGEPWTLEKLAETAGMSRTQFAVTFKELVGTTPMGYLSNWRLDIARSE 224 Query: 238 FSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 V +A G+AS ++F +AF R FG +P + R + Sbjct: 225 L-ETGRQVKAVASLCGFASPAAFSRAFSRRFGYSPKQKRSQA 265 >UniRef50_A6T1U9 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A6T1U9_JANMA Length = 281 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 9/276 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL + + + L GA I H L G+ L P + Sbjct: 1 MDRLSNLLSRFGVRANLFYDGDLCGSASYD-GAERRGYI--HLLQAGSVTLLGPDRKDLQ 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVE 119 L +++ +P+ + H+L +++ ++C ++ + L+ SLP+ L LA + Sbjct: 58 LTRPSLIFMPRPAKHQLFAGESDGAKLLCASMEFEGGIDNPLSASLPDCLVLALDD---- 113 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 L + + ++ E+ + G +A ++ L +R + +++ L RL Sbjct: 114 LPMLADTLEWMFAEAANVHCGREAALERLFELLIILLLRYLLDHHQLRTGMMAGLADMRL 173 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 + QM P HAW++ LAS ++MSRA++A F+ V G TP L R+ +A ++ Sbjct: 174 ARSLLQMHNSPEHAWSIAELASESNMSRAAYAVHFKRVIGQTPADYLLSWRVSLAQKLMR 233 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + +IA VGY S S+ +AF R+ G +P ++ Sbjct: 234 EGR-SITLIAAQVGYESPSALSRAFRRKTGLSPRDW 268 >UniRef50_A6G0H9 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G0H9_9DELT Length = 321 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 34/292 (11%) Query: 18 DKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL 77 +L + W L + + +G A L GE L PG+ LL Q AH L Sbjct: 28 YCQSLLAAPWGLAVPESARGAA-YVFVARGRATLR-AAGERVALGPGDFALLAQGDAHEL 85 Query: 78 SHV--------------------------DNESTCIVCGTLRLQHSARYFLTSLPETLFL 111 + T ++ G L + +A L +LP L L Sbjct: 86 ASGKRTPVYPLSELEWDSVLGRCIVRSGGAGAVTHLLTGGLDFELNA--LLPALPPVLSL 143 Query: 112 APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNI 170 + +WL L E+ G + + S++ A+REW+ + E + Sbjct: 144 SAEQAP---DWLAGLSALLVDEAAQPGAGSELVLSRLAELLAVGAIREWLDGGDEESPGL 200 Query: 171 LSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLR 230 L L P + + + P WTV SLA +SR++FA F+ G +P+ T+ R Sbjct: 201 LRALRDPPIRRSLDLLHRDPREPWTVASLAKAVGLSRSAFAARFQACLGVSPMRYYTRWR 260 Query: 231 LQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 + A Q E V +A+++GYAS ++F +AF G +PG+ R R R+ Sbjct: 261 MGHAEQWLRDEQRSVEEVADALGYASRAAFTRAFKSALGHSPGQARRRARER 312 >UniRef50_Q2SGY3 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SGY3_HAHCH Length = 331 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 31/299 (10%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 L ++L G++ + L DW + A E I++H + G L T E L Sbjct: 18 LLRQVLFNLRISGSLYFDSQLHGDWGMAVSASEY--IQFHCVAAGVCWLTTAT-EQVRLS 74 Query: 63 PGNVVLLPQNSAHRLSHVDNEST------------------------CIVCGTLR-LQHS 97 PG++ L + H LS+ + + ++CG + Sbjct: 75 PGDIALCMRGQVHTLSYAPDVALATDQAYLESLRQGAPLFREGPFNNRLLCGHFAIMDRD 134 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 FL +LP+ L + + SVE+ + ++E S + + +++ + Sbjct: 135 TVPFLAALPDLLVVRHQSKSVEWANALRGLLESKKELESND---NPVSNRLAEALMIRFL 191 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 + Q + + + ++ R+ + TVE +A MSR++F+ LF+ Sbjct: 192 EGYFQQQSQQGEPVGVIQDRRIARALNIFHRRYHEPLTVEQVAGAVGMSRSAFSVLFKRN 251 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 P+ L R A ++ + P+ ++ VGYASE++F +AF R + TPGEYR Sbjct: 252 LKQGPMEYLNSWRFYQARKILQQSHRPLSQVSLDVGYASEAAFSRAFKRRYDITPGEYR 310 >UniRef50_A8LA37 Transcriptional regulator, AraC family n=1 Tax=Frankia sp. EAN1pec RepID=A8LA37_FRASN Length = 214 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 5/202 (2%) Query: 82 NESTCIVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 +T ++C + + + L LP+ + L + LR A+ L E R G Sbjct: 7 GATTELLCASYSFDQTRPHPLLHGLPQVVHLP--ARVGHHPDLRAAVDLLGNELRRPRAG 64 Query: 141 VDALCSQICATFFTLAVREWIAQ--VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 +A+ + +R W+ + + + L P + + + PG W+VE Sbjct: 65 TEAIVPALIDMLLLYVLRAWLDEQSGHALTGWVMALNDPAISTALHHVHRHPGRPWSVED 124 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA A +SRA+FA+ F + G PLA LT R+ AA++ P+ +AE GY SE Sbjct: 125 LAREAGLSRAAFAKRFATIVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYRSEF 184 Query: 259 SFHKAFVREFGCTPGEYRERVR 280 +F KAF REFG PG YR + + Sbjct: 185 AFAKAFKREFGAAPGRYRRQGQ 206 >UniRef50_B5ZFX2 Transcriptional regulator, AraC family n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZFX2_GLUDA Length = 315 Score = 200 bits (509), Expect = 5e-50, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 115/308 (37%), Gaps = 28/308 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LSR + L P+ + W + A VI + + G +++ + + Sbjct: 7 IDPLSRTIALLRPRVLAWRVIEARGSWAIAFPANP--VISFGQVISGNPTIKIGSTHTAS 64 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES------------------------TCIVCGTLRLQH 96 L G++ L + N TC V G L+ Sbjct: 65 LTRGDLAFLGTTEPWVIKTGPNPRSIDFMTAIAEPARLMQTDDPSTNVTCFVAGAFVLEA 124 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + L L L +++ V L + + E+ + PG + ++ Sbjct: 125 PNAALVADLIPPL-LPVLHNDVAAERLGMLLGLVGDEATTTRPGRSLILDRLIEIILVET 183 Query: 157 VREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R + + +L+ L +L +Q + WTVE LA A MSR++FA F Sbjct: 184 LRTRPDALPGHAQRLLTALGDQKLARALQIIHGEASPPWTVERLARHAGMSRSAFADRFA 243 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 GT+P+ T+ R+ A M + +P+ IA G+ S S+F AF R G +P Y Sbjct: 244 RTLGTSPINYATQWRINQARSMLASRDMPMAQIARQAGFQSVSAFSTAFSRVVGVSPTAY 303 Query: 276 RERVRQLA 283 + L Sbjct: 304 ARSLEMLP 311 >UniRef50_B0RCB3 Putative AraC-family transcriptional regulator n=1 Tax=Clavibacter michiganensis subsp. sepedonicus RepID=B0RCB3_CLAMS Length = 324 Score = 200 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 123/306 (40%), Gaps = 30/306 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LS +L L + + W++ E +++ A+ G+A+L Sbjct: 4 DRLSEVLDLIQVRAVVSGGSAARGRWRIHSAIDED--LKFIAVVVGSARLTADGLDAPIE 61 Query: 61 LRPGNVVLL------------------------PQNSAHRLSHVDNESTCIVCGTLRLQH 96 L G+V +L P D + ++ G + L Sbjct: 62 LAEGDVAVLNGRAWLTLEGGSGDGPLTHVDPPAPGTPLRDADLRDPHADVLIGGRVDLDP 121 Query: 97 SARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 R LTS LP + S +R + + +E + G Q Sbjct: 122 VGRELLTSVLPPVAHI--DRRSPVGADVRAHVQRISRELAADRVGSAFAIRQYGQLLVLD 179 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 VR + + L LL RL + + P AW+++SLA + MSR+SFAQ FR Sbjct: 180 IVRASMLDPDVPAGWLRLLADERLRPALAVIHAQPARAWSLDSLARASAMSRSSFAQRFR 239 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +V+GTTPLA L + R+ +A + V +A ++GY SES+F AF R G P Y Sbjct: 240 EVAGTTPLAYLIEWRMLLARRELRSGDRRVGELAFALGYGSESAFSSAFKRHTGEAPVTY 299 Query: 276 RERVRQ 281 R R+R+ Sbjct: 300 RTRIRR 305 >UniRef50_C9XTT1 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9XTT1_CROTZ Length = 326 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 113/308 (36%), Gaps = 33/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ L P+ T K W++ +G + + A+ QG + + L Sbjct: 15 DPLTDIVALLNPRPTRAKLVEGAGQWRILRESGGEAF--YCAVLQGECLMSVNGKAPRRL 72 Query: 62 RPGNVVLLPQ-----------------------NSAH-RLSHVDNESTCIVC-GTLRLQH 96 G+ +L+P H R+ + ++ G Sbjct: 73 VAGDFILIPATYAFETTSAGAAPPVDFSQPTVLGDGHVRIGSTTGPAELLMNVGHCEFDT 132 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + + +L + L L ESR+ PG D + + + Sbjct: 133 PDKALIVALLPSEILIQGQRR-----FITLFELLLDESRARRPGRDVVMMHLLQLLLVES 187 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R A T IL L H R+ + + E PG W + LA MSR+SF +F + Sbjct: 188 LRSDPALSKT-AGILRGLQHDRVATALHLIHEKPGADWQIAQLARECAMSRSSFFAVFSE 246 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G +P+ L R+ +A + + IA GY S S+F AF + G PGE+R Sbjct: 247 TVGMSPMQYLFFWRMSLARKALISGQDNIEQIALRTGYQSASAFSVAFAKHAGMPPGEFR 306 Query: 277 ERVRQLAP 284 R R P Sbjct: 307 RRSRTARP 314 >UniRef50_C6W947 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W947_ACTMD Length = 309 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 110/299 (36%), Gaps = 30/299 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD + +L + W + +R + +G L G + Sbjct: 1 MDPVDDILTTMGLAHRSHHRVTASAPWGVAFSGAAP--MRLVVVARGRCVLS-EGGGVVE 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE---------------------STCIVCGTLRLQH-SA 98 L G+ +++ + LS V ++ +A Sbjct: 58 LGAGDCLVVRGGAEFVLSDVAERVPAPAREVLTAREVAVGGGGAGCEVLVAAFSFDAVAA 117 Query: 99 RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L LP+ L ++ + + + ES G + + ++ +R Sbjct: 118 EPLLPRLPDVLRVSL--RGGNLRRVLATVELMVLES-GDGFGSELVLGKLGDVLLVQVMR 174 Query: 159 EWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 W A + L+ L PRL + M H WTV SLA A MSR++FA FR+ Sbjct: 175 AWCAGSGDDRPGWLAALHDPRLSLATRAMHGDLAHPWTVASLAGRAGMSRSAFAAAFRER 234 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G +PLA LT R+ A + + IA VGY ++++ +AF R G +PG +R Sbjct: 235 TGESPLAHLTYWRMHRAKALLREGR-TLQEIAVRVGYETDTALSRAFRRAEGVSPGRWR 292 >UniRef50_A9C0Z2 Transcriptional regulator, AraC family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C0Z2_DELAS Length = 356 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 26/299 (8%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 + LL + ++ W + +H + G L +P L+ Sbjct: 61 VIDGLLNGLQWRASVFHVGQYCGRW--RASTAGRARASFHLILDGRCWLHLPGQPSVELQ 118 Query: 63 PGNVVLLPQNSAHRLSHVDNE-------------------STCIVCGTLRLQHSARYFL- 102 P + V L ++ H +S + T + CG + R L Sbjct: 119 PRDGVFLSRDVPHFISPYADPDMACAPQAMRPATGDAGIGETALACGFFTFEGPMRGLLV 178 Query: 103 TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA 162 + P+ L L +H++ + ++ E+ A+ ++ F +R+ Sbjct: 179 DAFPDHLVLRGDDHAMSGASM--LFDLMRAEALRTGTEPSAVMDRLVGLLFFYGLRQLAH 236 Query: 163 QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTP 222 + I SLL P ++ ++L P W+V +A+ +SRA+F + F + G P Sbjct: 237 GDARARGIWSLLRRPGFAPLVAELLREPARNWSVADMAARVCLSRATFFRQFAEACGQPP 296 Query: 223 LAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RERVR 280 L LR+Q+AA+ ++ + +AE+VGY S ++F +AF R G PG + R + R Sbjct: 297 QQFLLLLRMQLAARRLAQGEA-IGQVAEAVGYESYAAFSRAFKRVMGEQPGAWQRAQAR 354 >UniRef50_D1XPD5 Transcriptional regulator, AraC family n=1 Tax=Streptomyces sp. ACTE RepID=D1XPD5_9ACTO Length = 327 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 109/316 (34%), Gaps = 47/316 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD S L G++ + L W L G + + GA + Sbjct: 15 MDITSELFRGVRAHGSLFGSSTLSPPWSLHFVDGPPLTLC--TVLTGAGWVVPDGHPPER 72 Query: 61 LRPGNVVLLPQ-----------------------------NSAHRLS-HVDNE------S 84 L + +++ + HRL H E + Sbjct: 73 LGAHDTIVVRGPSTFTFVDDPATSVEPLICSEECSTPEQGGTRHRLGWHEPGEDDAVGGT 132 Query: 85 TCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T +V G L+ +R L SLP L + + L E PG Sbjct: 133 TTLVVGAYPLRSEISRRLLDSLPVVLRVPAGGVG------DPVLDHLAAEVARDEPGQQV 186 Query: 144 LCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + ++ +R W+ + S P G ++ + P WTV +LA Sbjct: 187 VLDRLLDWMLVCTLRTWLDGPGHRPPAWWSAQKDPVAGETLRLLHAEPAAPWTVAALARR 246 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF-SRETLPVVVIAESVGYASESSFH 261 +SR++ A+ F ++ G PL LT R+ +AA + + + V +A +VGY +F Sbjct: 247 TGVSRSTLAKRFTELLGEPPLTYLTHWRMTLAADLLTEQPSATVASVARTVGYTDPFAFS 306 Query: 262 KAFVREFGCTPGEYRE 277 AF R G TP +R Sbjct: 307 VAFKRVRGTTPRAHRH 322 >UniRef50_Q3BT36 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q3BT36_XANC5 Length = 280 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 9/279 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ LL + + + H A I H + +G P E + Sbjct: 3 DRLAGLLRHYSLSARVFHSGAFCGQ---HHYAAPHGYI--HLVRRGPITARSPVHEDLLV 57 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYN 121 +++ P+ ++HR ++ +C + L S L ++ L P+ + Sbjct: 58 TEPSLLFYPRVASHRFVAAPGDTAEQLCAEVDLGASTGNPLAMALPSMLLIPL---ADLP 114 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 L + L E+ G A ++C +R + +L+ L P+L Sbjct: 115 GLGPTLELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGATGLLAGLADPKLAR 174 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 I M + P AW++E+LA+ A MSRA FA F+D G TP L R+ ++ + + Sbjct: 175 AITAMHDAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDYLADWRMNVSCTLLKQG 234 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 PV V+A+ VGY S ++ +AF GC P ++ + R Sbjct: 235 R-PVAVVADRVGYGSPNALARAFRVRMGCAPRDWLAQQR 272 >UniRef50_Q5YVF5 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5YVF5_NOCFA Length = 328 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 115/319 (36%), Gaps = 47/319 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L LL +G + ++ W + G + + A+ QG + Sbjct: 1 MDVLESLLHETRARGAVLCQSMMDPPWGVRFSDG--AALTLVAMAQGGCWVRADGHPPVR 58 Query: 61 LRPGNVVLLPQNSAHRLSHV-------------------------------------DNE 83 L PG+ ++ + LS + Sbjct: 59 LDPGDAAIVRGPHPYTLSDSPTTSPRLFVEAADRCTDLGGREVPESAYIGPRVWGDRPDA 118 Query: 84 STCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 +T ++ G + A L +LP + + + L +E + PG Sbjct: 119 ATVVLTGAYPARADVAERLLAALPRVVRVPAEPDPAPE------MALLLREISADRPGQQ 172 Query: 143 ALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++ +R W+ + + L P G ++ + + P AWTV LA Sbjct: 173 VMLDRLLDLLLVSTLRCWLDDLGADGPPWYRALGDPVAGPALRAIHDDPAAAWTVAELAR 232 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 A +SRA+FA+ F ++ G P+ LT R+ +AA R + IA +VGY+ + Sbjct: 233 RAGVSRAAFARRFTELVGEPPMTYLTGWRVALAADRLRRTDDTLGAIARAVGYSDGYALS 292 Query: 262 KAFVREFGCTPGEYRERVR 280 AF R G PGE+R R Sbjct: 293 AAFTRVKGLRPGEFRRACR 311 >UniRef50_A7MMI8 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MMI8_ENTS8 Length = 314 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 110/307 (35%), Gaps = 33/307 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ L P+ T K W++ + + A+ QG + + L Sbjct: 3 DPLTDIVALLNPRPTRAKLVEGAGQWRILRESA--GEAFYCAVLQGECLMHINGKAPVRL 60 Query: 62 RPGNVVLLP------------------------QNSAHRLSHVDNESTCIVC-GTLRLQH 96 G+ +L+P + R+ + ++ G Sbjct: 61 VAGDFMLIPATYTFENTSTGTTPPVDISVPTLLSDGHVRIGATTGPAELLMNVGHCEFDT 120 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 R + +L L L ESR+ PG D + + + + Sbjct: 121 PDRALIVALLPNEILIKGQRR-----FVTLFELLLDESRNRRPGRDVVMTHLLQLLLVES 175 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R ++ IL L H ++ + + + PG W + LA MSR++F F + Sbjct: 176 LRSD-PELAKTAGILRGLQHEKIATALHLIHDKPGADWQIAHLARECAMSRSAFFATFSE 234 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G +P+ L R+ +A + + + IA GY S S+F AF + G PGE+R Sbjct: 235 TVGMSPMQYLLFWRMSLARKALTSGQDNIEQIALRTGYQSASAFSVAFTKHAGMPPGEFR 294 Query: 277 ERVRQLA 283 + R Sbjct: 295 RQSRTAR 301 >UniRef50_A1SPZ5 Transcriptional regulator, AraC family n=1 Tax=Nocardioides sp. JS614 RepID=A1SPZ5_NOCSJ Length = 332 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 119/314 (37%), Gaps = 41/314 (13%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGE----------LSVIRWHALTQGAAKLE 52 L+ L +G I W G V+ H + +G ++ Sbjct: 4 PLADALAKLRLEGAIFLRGSYSEAWAYESVPGADLAALLVPGAERVVLMHVIGRGRCWIQ 63 Query: 53 MPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNEST 85 + G+ G+VV+LP HR+ + T Sbjct: 64 VGDGDRHWADAGDVVVLPYGDTHRMGGVESVEPVQVGTLVQPPPWTRMPAIEHGGGGDPT 123 Query: 86 CIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 +VCG L + L++LP ++PV + E ++R +I + Q++ G + Sbjct: 124 QVVCGYLASEDPLFDPRLSALPPVFVVSPVGEAQE--FVRASIAYALQQTAQVADGRFEV 181 Query: 145 CSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 ++ +R +A L L HP L + M P W+V LA +A Sbjct: 182 PPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMAAMHADPAAHWSVAELARVA 241 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 +S + + FR V G P+ L R+ +A + L V VIA VGY SE +F +A Sbjct: 242 AVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELGVAVIAHRVGYESEEAFSRA 301 Query: 264 FVREFGCTPGEYRE 277 F R G +P ++R+ Sbjct: 302 FKRAHGRSPRQWRQ 315 >UniRef50_D0C8I5 Transcriptional regulator n=2 Tax=Acinetobacter RepID=D0C8I5_ACIBA Length = 295 Score = 196 bits (500), Expect = 5e-49, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 5/241 (2%) Query: 42 HALTQGAAKLEMPTGEI-FTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARY 100 H + K++ +I + G+V+++P H + +++++ V T Q + Y Sbjct: 49 HIFQGSSFKIKSDEQKINEIVNDGDVIVIPSRFKHSIEIIEDKAAEPVVITCVFQLNGVY 108 Query: 101 ---FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 LP+ + + W+ + ++ E G + S + ++ Sbjct: 109 GQTIAEGLPKYIVVPSHQDGKVAEWIPMTVAAIKLELDQPSLGSQVMLSSVIDLLLVWSI 168 Query: 158 REWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R W+ + K+ +S L P + + M P WTVE LA + S++ F++ F Sbjct: 169 RFWLNKETLNHKSWISALQSPTISKALFLMHSNPTKEWTVEILAKETNQSKSKFSKNFIQ 228 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 + GTTP+ L R+++A Q + IA+ VGY+S ++F ++F++ FG +P ++R Sbjct: 229 LVGTTPINYLKHWRMKLAKQYLMETNKSISQIADLVGYSSPAAFTRSFIQTFGYSPRKFR 288 Query: 277 E 277 E Sbjct: 289 E 289 >UniRef50_Q0HZJ9 Transcriptional regulator, AraC family n=13 Tax=Gammaproteobacteria RepID=Q0HZJ9_SHESR Length = 281 Score = 196 bits (500), Expect = 5e-49, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 10/283 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS L+ AP+ ++ + L Q + + H L +G L + T Sbjct: 1 MDALSSLIQHAAPKASLFFSGNLC---QSAESEEHANGGQLHLLRRGELGLHQTGSAVQT 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 + +++ P+ HRL + +VC L + S +LP+ L + + Sbjct: 58 ISEPTLIVYPRGRHHRLQPLHFSGCDLVCARLTFRDS--PLFRALPDALIIPL----TKL 111 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L I L E+ S +A+ + + L +R + E +L+ + P+L Sbjct: 112 EGLAPTINLLFDEAFSQRYAHNAVVASLLDLLLLLLLRHMVEHNLCESGLLAAMTDPKLA 171 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 I+ + P WT+ LA +A MSRA FA F V G PL+ +T+ RL +A Q+ Sbjct: 172 KAIEAIHASPDTPWTIAELAKLAGMSRAQFAARFHQVIGQPPLSYVTESRLLLAQQL-LL 230 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 PV IA VGY+ +F +AF R+FG TP + ++ + + Sbjct: 231 AGQPVKFIALEVGYSGGVAFSRAFERQFGLTPTRWLQQQKSMG 273 >UniRef50_A6VS98 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Proteobacteria RepID=A6VS98_MARMS Length = 308 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 34/301 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS ++ L P+ K W++ E+ + + +G+ + + E Sbjct: 2 IDPLSSIVTLLQPKAAFSKVVHAAGKWRIRRE--EIGNPFYCVVLEGSCEFTLKGDEPIY 59 Query: 61 LRPGNVVLLPQN------SAHRLSHVDNESTCI--------------------VCGTLRL 94 L G+ VL+P+ S+H + D ++ I + G + Sbjct: 60 LTAGDFVLVPEAHAFTVASSHPPALTDADTVPIKTAASTYFAGEAEQELNAHLLIGHCQF 119 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + L SL L H E L + + +ES + PG D++ +++ Sbjct: 120 EAPDSKILISLLPKLV-----HLREAKRLATLVELVIEESLAQRPGRDSVLARLLEILLI 174 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A R + +L L RL I+++ + AWT++ LA A +SR+SF Q F Sbjct: 175 EAFRTKMDTPEV-PGLLVGLADERLAMAIRKIHQDVSKAWTIDQLAKEASLSRSSFFQRF 233 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 G TP+ + R+ IA + R+T + IAE +GY S S+F AF + G P + Sbjct: 234 SKAVGYTPMEYVIAWRMAIAKDLLRRQTFTMATIAERIGYQSASAFSSAFSKYTGQAPSK 293 Query: 275 Y 275 + Sbjct: 294 F 294 >UniRef50_Q0KAF9 Transcriptional regulator, AraC-family n=9 Tax=Bacteria RepID=Q0KAF9_RALEH Length = 334 Score = 196 bits (498), Expect = 8e-49, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 107/282 (37%), Gaps = 14/282 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS LL + + L L A + H L +G +L P G Sbjct: 18 IDRLSALLERFRARAHLFHQGPLCG---LTQFAAQPGRGFLHVLRRGELELRHPPGSGLP 74 Query: 61 ----LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNH 116 ++ P+ H + E + C L AR + L P+ H Sbjct: 75 GSLRFDEPTLLFYPRPVHHMFHNPPQEGSDFTCAALDFDGGARNPVVRALPPLIALPLAH 134 Query: 117 SVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ---VNTEKNILSL 173 L +++ L E+ G L ++ +R I + +++ Sbjct: 135 ---VAGLEQSLALLFAEAGQVRCGHRLLADRLFEVVLIQLLRWLIDHHQEAGIQAGLIAG 191 Query: 174 LLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQI 233 L PRL + + E PG W + +A+ A MSR++FA FR V G P LT RL + Sbjct: 192 LSDPRLARALVALHEAPGEPWDLPRMAARAGMSRSAFAATFRLVVGQPPADYLTDWRLTL 251 Query: 234 AAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 A PV +A +GYA+ S+ +AF G +P ++ Sbjct: 252 AQAQLRLGR-PVKSVALELGYANASALSRAFTARLGQSPRQW 292 >UniRef50_Q15XK9 Transcriptional regulator, AraC family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15XK9_PSEA6 Length = 316 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 119/318 (37%), Gaps = 38/318 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L +G L A + T+G +E+ Sbjct: 1 MDLLGDVLCSLNVFSHSIGIFKIGGSTHLHLTAMPTNFAFIFTSTEGECWIEVDCCPPRQ 60 Query: 61 LRPGNVVLLPQNSAHRLSHV----------------------------------DNESTC 86 L G+ VL+ AHR +S+ Sbjct: 61 LHIGDSVLILGGRAHRFGASLASEQKSFETLWAANGLPKFGETRDKPIYLSVDETEDSSS 120 Query: 87 IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 ++ + A + L LP +F++ S WL A F Q+E PG A Sbjct: 121 LLSLAFTVDEPAHHSLLKLLPPYIFVS--KGSQLDTWLSAAFGFCQRELSHNTPGFSATA 178 Query: 146 SQICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 F VR ++ + ++ + L PR+G + M V ++A Sbjct: 179 MNFTNLIFGEFVRSYLNSADLPHESWMRGLSDPRIGRALAMMHTRTAEQLMVSTMAKEVG 238 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSR SFA++F+ + G +P+ L R+ AAQ + I E +GY SE +F +AF Sbjct: 239 MSRTSFARIFKTLVGQSPIDYLINCRMHKAAQYLLEGNHSIGKITEMIGYHSERAFRQAF 298 Query: 265 VREFGCTPGEYRERVRQL 282 ++ FG +P +++++ +++ Sbjct: 299 IQRFGLSPSQFKKQQQKI 316 >UniRef50_A1T3N4 Transcriptional regulator, AraC family n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1T3N4_MYCVP Length = 307 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 113/308 (36%), Gaps = 31/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS + L G + + DW + ++ + G +L L Sbjct: 4 DQLSDVFDLIEVAGMVSGGFSVRGDWFCRLEIKDP--VKMIGVVCGRVRLATDGYGPIDL 61 Query: 62 RPGNVVLLPQNSAHRLSHVDN-------------------------ESTCIVCGTLRLQH 96 PG+V +L + L E+ I+ G + + Sbjct: 62 EPGDVAILNGCTQVVLKGGPGAAPATKLDVEQSGDAFVRVDGAECGEADVIIGGHVDVNP 121 Query: 97 SARYFLT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + L +LP + + E L + + E G Q Sbjct: 122 TGAALLAQALPRVGLVR--ASADEATNLHAILNRVLDEVTGNRIGSAFAVQQQGQLLLLE 179 Query: 156 AVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R ++AQ + L LL RL + M + PG W +E LA A MSR SFA+ F Sbjct: 180 VLRAYLAQADDLPPGWLRLLTDERLRPAVTSMHDEPGKPWRLEELARAAAMSRTSFAERF 239 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 R V+G PL L R+Q+A V +A +GY SES+F AF RE G +P Sbjct: 240 RAVAGVPPLTYLNAWRMQLARHALRDSDTRVGPLAFRLGYTSESAFSNAFKREVGMSPLR 299 Query: 275 YRERVRQL 282 YR V+ + Sbjct: 300 YRASVQAV 307 >UniRef50_A9C071 Transcriptional regulator, AraC family n=3 Tax=Comamonadaceae RepID=A9C071_DELAS Length = 330 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 122/308 (39%), Gaps = 36/308 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAA-KLEMPTGEIF 59 MD LS +L + + + L + W L ++IR + +GA +++ + Sbjct: 1 MDVLSEVLDICRSERAVTARFALTAPWSLKSTGVTGAMIR---MARGAPYWIQVEGMQPL 57 Query: 60 TLRPGNVVLLPQNSAHRLSH-------------------------------VDNESTCIV 88 + PG++V+LP +AH ++ E+T + Sbjct: 58 RVEPGDLVMLPMGAAHVVASDLGMACELFSRLISRHAEGPQDENPLVFSHGGGGEATDMF 117 Query: 89 CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 L R+ + + L + + L + L E+ + PG +++ Sbjct: 118 SALLWFSAYCRHSVFRILPPLIHIRASDLPLADCLAATMQSLTLETLARRPGWRLSAARM 177 Query: 149 CATFFTLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 +RE +A + + L L + I M P +W+VE+LA+ A MSR Sbjct: 178 GELLLVNILREHLAREAAVGEGWLRGLGDACIARTIVCMHREPQRSWSVETLAAEAGMSR 237 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 F+ F+ + G TP+ LT R+ +AAQ L IAE+ GY S F +AF R Sbjct: 238 TRFSMRFKQLVGATPIGYLTAHRMALAAQQMEAGGLSSARIAENAGYDSPKVFARAFRRW 297 Query: 268 FGCTPGEY 275 G TP + Sbjct: 298 SGHTPKAW 305 >UniRef50_D0LQY3 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQY3_HALO1 Length = 313 Score = 193 bits (492), Expect = 4e-48, Method: Composition-based stats. Identities = 77/300 (25%), Positives = 120/300 (40%), Gaps = 33/300 (11%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLRP 63 S +L + + VLG+ W L S ++A+ QG +L + E L P Sbjct: 2 SDVLEVIRFSTSFFGRFVLGAPWALRIPEKPTS--SFYAVAQGQPRLLVNGHAEPLCLAP 59 Query: 64 GNVVLLPQNSAHRLSHVD-------------------------NESTCIVCGTLRLQHSA 98 G+V ++P+ S H+ D T ++ G A Sbjct: 60 GDVAIVPRGSGHQFDDGDRRAPPRQGFIDGAALRSATGMLGGAGAKTILIAGCFTFSVGA 119 Query: 99 RY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 R+ L +LP L L H+ L I + ES + PG + +++ A+ Sbjct: 120 RHPLLRALPAALHLP--AHAPPRPELAATIQLITAESATPRPGSALILARLADVLLMQAL 177 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R + + L L P +G + + WTV +LA+ +SR+ FAQ FR + Sbjct: 178 RAQVTL--SANGGLRALSDPVVGPALSLIHTRYRAPWTVAALATAVGVSRSGFAQRFRAL 235 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 G PL L R+ AA + V IA+ VGYAS ++F KAF + G P +R Sbjct: 236 LGEPPLRYLVGWRMTKAAARLRVTSDSVAEIADEVGYASAAAFSKAFKQWAGVGPDAFRR 295 >UniRef50_D2PPT5 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPT5_9ACTO Length = 296 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 75/301 (24%), Positives = 124/301 (41%), Gaps = 37/301 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M+ L LL G + VL + + L G + + A +G A + + G Sbjct: 1 MEPLDDLLRSVRADGAVLGTPVLAAPYALRFVDG--AALTLIAPLRGEAWI-VADGTPVV 57 Query: 61 LRPGNVVLLPQNSAHRLSHVD---NESTCIVC----------------GTLRLQHSA--- 98 +RPG+ ++ ++ E+ ++C GT+ L +A Sbjct: 58 VRPGDTAVVRGPEPFVVTDDPDRRGETVDVLCDGTVQGSSTPYDESAAGTVLLAGAAHVR 117 Query: 99 ----RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 L LP + + P +H +L+Q + M G + ++ Sbjct: 118 QELPSRLLRDLPRAVVV-PADHDC-----APLRDYLEQRIAAGMHGRRVVLDRLIDWLLI 171 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R+W Q +T +G V+Q + + P WT+ SLA +A +SR + A+ F Sbjct: 172 CALRDWFEQNSTP--WYRAAGDATVGPVLQALHDAPAAPWTLASLAGVAGVSRTTLARRF 229 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 D+ G PL LT+LR+ +A Q+ + V +A VGYA SF AF RE G +P Sbjct: 230 TDLIGEPPLTYLTELRMTLATQLLAEPDATVARVARRVGYADAFSFSAAFKRERGVSPST 289 Query: 275 Y 275 Y Sbjct: 290 Y 290 >UniRef50_Q39MN2 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. 383 RepID=Q39MN2_BURS3 Length = 199 Score = 193 bits (490), Expect = 7e-48, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 1/183 (0%) Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 ++ L+ LP L L + + WL + F+ E+ S G A+ S++ F Sbjct: 14 DRLSQRLLSVLPPVLVLKGLRERP-FEWLELSCHFILDEALSPRAGAAAMISRLLDVIFV 72 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R W LS + R+ + + PG AW+V LA ++++SR++FA F Sbjct: 73 QLLRTWATAGAAGHGWLSGAIDSRINPAMSAIHADPGRAWSVSDLAELSNLSRSAFADRF 132 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + V G PL+ LT RL AA++ P+ IA VGY SE++F +AF + +P + Sbjct: 133 QRVVGQAPLSYLTTWRLDRAAELLRYSRAPISDIAGRVGYTSEAAFSRAFRGRYEMSPMQ 192 Query: 275 YRE 277 +R+ Sbjct: 193 WRK 195 >UniRef50_C4DJ08 DNA-binding domain-containing protein, AraC-type n=3 Tax=Actinomycetales RepID=C4DJ08_9ACTO Length = 304 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 108/305 (35%), Gaps = 34/305 (11%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNV 66 +L +G L W + G + +G L + G L G+ Sbjct: 1 MLGGIRAEGACVNQVSLEPPWAIRFAEG--GALTLLTAVRGEGVLVLADGTEHKLNEGST 58 Query: 67 VLLPQNSAHRLSHV--------------------------DNESTCIVCGTLRLQHSAR- 99 L+ + L+ + +T ++ GT R + + Sbjct: 59 ALVRGDEPFHLADSAAAMDGPIKVLSGNGYETVCELSLDESDATTAVIVGTYRTTCTRQE 118 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM----PGVDALCSQICATFFTL 155 L +LP L + + +L + + PG AL ++ Sbjct: 119 RLLRTLPSALVVDEDTTDATKPEVATLGGWLDAVTDALRRRRGPGGQALIDRLLDWGLVC 178 Query: 156 AVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 + W + P G ++ + P H WTV +LA+ A +SRA A+ F Sbjct: 179 TLACWFEHQGADAPAWYRGAQDPVAGPALEAIHNRPQHLWTVGALAAEAKVSRAHLAKRF 238 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 +V G PL LT+ R+ A + S + V +A +VGYA +F AF R G +P + Sbjct: 239 AEVMGQPPLKYLTEWRMYTAEDLLSDSDMSVAEVARAVGYADPFAFSTAFKRHRGTSPRQ 298 Query: 275 YRERV 279 YR V Sbjct: 299 YRSAV 303 >UniRef50_C9PQP0 AraC family transcriptional regulator n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PQP0_9PAST Length = 275 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 11/276 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS+L + + L + H + QG+ L++ Sbjct: 1 MDALSQLFHYFPFRTDLFFIGKLCQIAKFQEENKGY----LHFIRQGSFLLQIHNHPPKR 56 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFL-TSLPETLFLAPVNHSVE 119 + ++L N+ H + + +E I C + + ++ +T+ L E Sbjct: 57 IDKPCIILSASNTLHNIHPLSDE-LDIFCISFDFGSGVLNPITNTIKDTVIL----DISE 111 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 L + QES S G A+ + A +R + Q + + +L L L Sbjct: 112 QPDLAVIASQIFQESESQEYGFQAIIHHLSAYLTLQVIRCCLKQNHFKTGLLKGLTDKYL 171 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 V+ M + P + W ++ LA+ A MSR+ FA F+++ G +P+ LT R+ +A + Sbjct: 172 APVLLDMHQRPEYNWKLDELATKAAMSRSKFAVYFKNILGISPMEYLTHWRITLAQTLLL 231 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + + +A+ VGY+ ++ +AF+R G +P ++ Sbjct: 232 KGK-SLTQVADDVGYSHNAALTRAFLRIVGKSPTDW 266 >UniRef50_A6WBY5 Helix-turn-helix-domain containing protein AraC type n=8 Tax=Actinomycetales RepID=A6WBY5_KINRD Length = 323 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 109/317 (34%), Gaps = 48/317 (15%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDA S L+ G++ + L + W L G + + GA + Sbjct: 1 MDAFSDLMRGVRAHGSLFASSTLTAPWSLHFVDGAPLTLC--TVLGGAGWIVPEHEAAVR 58 Query: 61 LRPGNVVLLPQ-----------------------------NSAHRLS---------HVDN 82 + + VL+ + HRL + Sbjct: 59 VGAYDTVLVRGPGTFTFVDEVGTTAVPVVCGVDCATPEQGGTRHRLGWHDPGAPDDDGNG 118 Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 +T +V +R L +LP L + + + L E PG Sbjct: 119 TTTLLVGAYPARGEISRRLLEALPVVLRVEAGGRA------DPVLEHLAAEVAVDAPGQQ 172 Query: 143 ALCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++ +R + + P G +Q + P WTV +LA Sbjct: 173 VVLDRLLDWMLVCTLRTHFDRPGGRAPAWWTAQRDPVAGRALQLLHAEPAAPWTVAALAG 232 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS-RETLPVVVIAESVGYASESSF 260 +SRA+ A+ F D+ G PL LT+ R+ +AA + R L V +A SVGYA F Sbjct: 233 RVGVSRATLAKRFSDLVGEPPLTYLTRWRMTLAADLLLDRPELTVAGVARSVGYAEPFGF 292 Query: 261 HKAFVREFGCTPGEYRE 277 AF R G +P E+R Sbjct: 293 SAAFKRVRGLSPSEFRR 309 >UniRef50_A9CLF9 Transcriptional regulator, AraC family n=5 Tax=Rhizobiales RepID=A9CLF9_AGRT5 Length = 299 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 36/304 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D ++ ++ L P +I K G W++ EL + A+ +G L + L Sbjct: 3 DPIAEVVSLLKPSPSISKLVTGGGRWRV--ERTELGSPFYCAVVEGRCLLTVAGKAPIVL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIV-------CGTLRLQHSARY-------------- 100 G+ VL+P+ + +S ++ + G RL Sbjct: 61 TTGDFVLVPEIFSFTMSSIEPPPRGALLQRLETSPGVFRLGDPDAPVEIKAMVGHCLFGS 120 Query: 101 -----FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 ++ LPE + + L + + E+ + + + ++ Sbjct: 121 DDKTLLVSLLPEIIHVRGEQR------LALLVQMINDETGAERTAREMVLGRLLEVLLIE 174 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R + +L + P+L ++++ E PG TVE LA A MSR++F + FR Sbjct: 175 VLRS-TGGASAPPGLLRGMADPQLAPTLRRIHEDPGRNMTVEGLAQFAAMSRSTFFERFR 233 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G P+ T R+ +A ++ + + IA+ VGY S S+F AF R G TPG Y Sbjct: 234 REVGVAPMEYATGWRMALAKELLRK-DVATAEIAQRVGYGSASAFSVAFSRHVGQTPGAY 292 Query: 276 RERV 279 Sbjct: 293 SRAA 296 >UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=Actinobacteria (class) RepID=D1AA08_THECD Length = 332 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 112/306 (36%), Gaps = 32/306 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDAL+ LL +G VL W + + + + A+ +G A GE Sbjct: 1 MDALASLLDGPRARGAFLLKAVLDPPWAMR--VQDRAPLTLVAMLRGEAWAIPQAGEPVK 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIV--CGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 G V+++ + ++ IV G + R L + Sbjct: 59 AGAGEVMIIRGPDPYVVADDPATPPGIVIHPGGRCSDPTGRDLHDELTLGVRTWGNAPDG 118 Query: 119 EYNWL---------------------------REAIPFLQQESRSAMPGVDALCSQICAT 151 + L + L+QE PG + + ++ Sbjct: 119 AHRMLVGTYRMSGEIGARLLAALPPLLTVEPESPLVALLEQEMTRDEPGQEVMLDRLLDL 178 Query: 152 FFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 ++R W + + L P +G ++ M + P WTV +LA +SRA+ Sbjct: 179 LLITSLRTWFTRRRDAAPAWYRALADPVVGRALRMMHQDPARPWTVAALAGRTGVSRAAL 238 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 A+ F ++ G P+A LT RL +AA + V +A VGY S +F AF R G Sbjct: 239 ARRFTELVGEPPMAYLTGWRLALAADLLREPEATVASVARRVGYGSPFAFSAAFKRVRGV 298 Query: 271 TPGEYR 276 +P +YR Sbjct: 299 SPRQYR 304 >UniRef50_C3JUH7 Transcriptional regulator, AraC family n=3 Tax=Nocardiaceae RepID=C3JUH7_RHOER Length = 319 Score = 189 bits (481), Expect = 8e-47, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 124/316 (39%), Gaps = 47/316 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS +L + +G +L W L + + I L +G+A + TG+ Sbjct: 1 MDALSMMLAGSRAEGAFLLRSLLDPPWSLR--IEDHAPITVLVLVRGSAVVVSDTGQTED 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE------------------------------------- 83 L G+V LL + ++ + Sbjct: 59 LEAGDVALLRGPDPYTVADHPDTPVHVLIDEAQNCAAVDGSPLEDMSVHGIRTWGNSTSG 118 Query: 84 STCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 T ++ GT RL +R L SL + + L+Q+ + PG + Sbjct: 119 QTVMLTGTYRLDSYVSRQILDSLTPVAVVRRSIETAPMT------NLLEQQIAADGPGQE 172 Query: 143 ALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 L ++ AVR W A+ N + P +G ++ + P H WTV SLA Sbjct: 173 VLLDRLLDLVLISAVRTWFAENPNRSPRWIKAYEDPVIGHALRLIHNRPEHPWTVASLAQ 232 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 + SRA+FA+ F + G P+ LT+ RL +AA + + V IA VGY+S + Sbjct: 233 ESGSSRAAFARRFTSLMGLGPVGYLTEWRLSVAADLLADPARTVSSIAREVGYSSPFALT 292 Query: 262 KAFVREFGCTPGEYRE 277 AF R G +P YR+ Sbjct: 293 TAFTRHHGMSPKMYRQ 308 >UniRef50_A3YG00 Transcriptional regulator n=2 Tax=Proteobacteria RepID=A3YG00_9GAMM Length = 307 Score = 189 bits (481), Expect = 8e-47, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 35/301 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS+++ L P+ T K + +++ + + + G A L + T Sbjct: 3 IDPLSQIIALLNPEVTHSKLVHASAAFEVSRSDSNDAF--YCLILSGKAYLNIKHATQLT 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVC-------GTLRLQH----------------- 96 L G+ VL+P + S + + G R Sbjct: 61 LNEGDFVLIPALGSFTFSSDQTTTKEMQNKPQFGDDGIYRFGPISETPKIQALVGHSKFT 120 Query: 97 --SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + ++ LP + + + L + L +E+++ DA+ + Sbjct: 121 SVDKQLLVSLLPSYVLIQ------KEARLTKIASLLLEETQANRAAKDAIIEHLLQVLMI 174 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A R Q +T ++L+ L R+ I+ + + P H W+V LA A +SR++F F Sbjct: 175 EAFRSS-TQADTVTSLLAGLADARINPAIRAIHDTPHHPWSVTQLADQARLSRSAFYSRF 233 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G TP+A L R+ +A M ++ + V IA+ VGY S S+F AF R G +PG Sbjct: 234 NRIMGVTPMAYLLNWRMTLAKHMLNQGNMRVSEIADKVGYGSSSAFSSAFTRHVGQSPGS 293 Query: 275 Y 275 Y Sbjct: 294 Y 294 >UniRef50_C9YV93 Putative transcriptional regulator n=2 Tax=Streptomyces RepID=C9YV93_STRSW Length = 313 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS LL +G+I + VL + W + G + ++ +G L +P G + Sbjct: 5 DPLSALLGGIRAEGSIVSHAVLEAPWTIRFVDGAPLTMV--SVLRGGGILLLPDGSEQAV 62 Query: 62 RPGNVVLLPQ-------------NSAH----------------------RLSHVDNESTC 86 G+ ++ + H R + +T Sbjct: 63 GVGDTAIVRSLDAFHLVDQPDTLDRPHVEYEIACFAADAECTARDLGGIRWGDEPDGATA 122 Query: 87 IVCGTLR-LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 ++ G R H L +LP L + + A L+ G AL Sbjct: 123 LIVGAYRASGHRHERLLRALPPVLVINEDTEVCAWLETAAADAALRS------AGSQALM 176 Query: 146 SQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 ++ +R W + +E + L P L ++ P WTVE+LA+ + Sbjct: 177 DRLLDWALVCTLRTWFDRAGSEAPDWYRGLADPILAPALEAFHARPSKRWTVEALATESG 236 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 +SRA FA+ F V G+ PL ++ R+ A + S + IA+SVGYA F AF Sbjct: 237 VSRALFAKRFTKVMGSPPLTYVSGCRMDEAEALLSDTDSSIARIAKSVGYADAFGFSAAF 296 Query: 265 VREFGCTPGEYRER 278 R G +P +R R Sbjct: 297 KRRRGVSPSAFRAR 310 >UniRef50_D2Q0X6 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q0X6_9ACTO Length = 278 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 78/280 (27%), Positives = 123/280 (43%), Gaps = 13/280 (4%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALSRLL PQG + + L + WQ+ AG + + + +G A L + L Sbjct: 3 DALSRLLDDVRPQGVVVETADLSAPWQVRCPAG--AALTLVTMVRGTAVLTVDGETPAEL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNEST---CIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHS 117 G+V L+ + L+ ES +V G+ + L LP L + Sbjct: 61 AAGDVALVVGRRPYTLADGPAESADQAVLVTGSYEVGGGVCDRVLGGLPPVLLV------ 114 Query: 118 VEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLH 176 + A+ L E +A PG AL ++ A+R W+ + ++ Sbjct: 115 ESGAGVGRAVDLLTDELENARPGQRALLDRLLDLIVLTALRVWLDRPDSSAPPWYRAQQD 174 Query: 177 PRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQ 236 P +G+ + M P WTV LA+ + MSRA+F++ F + G P++ LT RL +A Sbjct: 175 PAIGSALALMHAEPARRWTVAELAASSSMSRAAFSRRFHALVGEPPMSYLTCWRLCLAGD 234 Query: 237 MFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 + + +A VGYA+ + AF R +G PGEYR Sbjct: 235 LLRGTDDTLATVARKVGYANGYALSAAFTRFYGVRPGEYR 274 >UniRef50_C1YVX3 DNA-binding domain-containing protein, AraC-type n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YVX3_NOCDA Length = 318 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 114/318 (35%), Gaps = 37/318 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L LL +G V+ W + + + + +T G A + GE Sbjct: 1 MDPLVHLLDGPRARGAFTLRTVMSPPWGID--IRDEAALTLVVVTSGRAWVA-ANGEEAE 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCI--VCGTLRLQHSARYFLTSLP------------ 106 PG++VL+ + ++ + + G + S+ Sbjct: 58 AGPGDLVLVRGPEPYVIADSPGREPTVTALPGARCVARDGAEVHVSMSHGVGTWGNDPDG 117 Query: 107 -ETLFLAPVNHSVEYNWLR-----------------EAIPFLQQESRSAMPGVDALCSQI 148 +T+ + E L + L +E + +L ++ Sbjct: 118 TDTMVVGAYLDDSEVGRLALAALPSLAVLPEGRVDPALVELLAREITTGHVAQTSLNDRL 177 Query: 149 CATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 +AVR W+ ++ N L+ P + ++ + E WT+ESLA +SR Sbjct: 178 LDCLLVMAVRAWLEDNPDSAPNWLTARSDPVVARALELVHERVADPWTLESLAGECAVSR 237 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE-TLPVVVIAESVGYASESSFHKAFVR 266 A+ A F+ GT P+ L RL +A + + L + +A VGY S +F AF Sbjct: 238 ATLAARFQRAVGTPPMTYLRTWRLTVACDLLTASPGLGLEAVAARVGYGSAFAFSSAFKN 297 Query: 267 EFGCTPGEYRERVRQLAP 284 G +P YR + P Sbjct: 298 HTGASPSAYRAARAERVP 315 >UniRef50_D1BJS6 DNA-binding domain-containing protein, AraC-type n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJS6_SANKS Length = 338 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 72/341 (21%), Positives = 116/341 (34%), Gaps = 63/341 (18%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLP---HGAGELSVIR--WHALTQGAAKLEMPT 55 MD LS LL +G V+ W + A L V+ L G A E+ Sbjct: 1 MDPLSGLLDHPRARGAFTLRVVMDPPWSVDVRDEAALTLVVVLRGGGRLVAGGATTELRP 60 Query: 56 GEIFTLRPGNVVLLPQNSAHRLS------------------------------------- 78 G++ +R ++ +A R S Sbjct: 61 GDVALVRGPEPYVVEHLTAPRPSPTPSTDAATRPPARPATTAPTSAVIGPDQSCSTPDGT 120 Query: 79 ---------------HVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWL 123 D + +V R +LP + + Sbjct: 121 DLHLAMAHGTRTWGNSADGADSLLVATYQGAGEVGRLATEALPRVAHVPAGSGPG----- 175 Query: 124 REAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI-AQVNTEKNILSLLLHPRLGAV 182 + L E + G + + ++ VR W+ A + LS P + Sbjct: 176 TTLVDLLVGEVAADGVGQETVLDRLVDVLLVTTVRAWLSAHPDDAPGWLSAPHDPVVHGA 235 Query: 183 IQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET 242 ++ + + P WTV +LA +SRA+FA FR G+ P+A LT+ RL +AA + + Sbjct: 236 LRAIHDRPAEPWTVVALAREVDVSRATFAARFRAQVGSPPMAYLTRWRLTLAADLLTTTD 295 Query: 243 LPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 + IA VGY S + AF ++ G +PG YR + Q Sbjct: 296 RTLASIATDVGYGSPFALSAAFSQQMGTSPGRYRRQQTQAG 336 >UniRef50_A9GPX5 Probable transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GPX5_SORC5 Length = 311 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 116/306 (37%), Gaps = 30/306 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS + + W L A + V+ H +T+G+ L E +L Sbjct: 5 DPLSSRFSMAKLSSELVCRTAARGAWALELPARPILVL--HHVTEGSCVLR-AGREAVSL 61 Query: 62 RPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGTLRL 94 G+V L+ N HR+ H D + +CG R Sbjct: 62 YQGDVALVRPNVGHRVDHGDARAKPVLLDRWLEVAREEDGERVLGRGAATARALCGVFRF 121 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 +H A L + T+ A A+ L+ E A PG + Sbjct: 122 EHDALAPLLQVLPTVIHAGARAIEARPSFAGALARLRSELHEARPGAGLARRRWLELILI 181 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 VR + + L + I +++ P AW V++LA +SRA+ A+ F Sbjct: 182 ELVRLLADREPAKLAALGATQDAVVARAIAELVHDPARAWDVDTLARTVGVSRATLARRF 241 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + +G P+A LR + A ++ TL IA +VG+A+ +F +AF RE G TP Sbjct: 242 LEATGAPPMAYRATLRTEHARRLLRETTLSNQQIAHAVGFATVQAFQRAFRRETGATPSA 301 Query: 275 YRERVR 280 R ++R Sbjct: 302 VRAQLR 307 >UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C0Z0_BEUC1 Length = 329 Score = 186 bits (472), Expect = 9e-46, Method: Composition-based stats. Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 4/261 (1%) Query: 19 KNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLS 78 V G+ +L H G +V+R GA E TL+ G+V LLP H L Sbjct: 63 ATVVDGAGLRLLHVTGGSAVLRSRREDDGAVGPLSDPHE-VTLQAGDVALLPHAGRHELH 121 Query: 79 HVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 + C++ L L+ S +++L T+ + + + + +E + Sbjct: 122 AARDGGACVLTAGLTLEASPFDRVSALMPTVLFTCGFRLDDPAY-AGLVALIDREVSAES 180 Query: 139 PGVDALCSQICATFFTLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 P L ++ + A+R W+ + + L+ P LG ++ + PG +W VE Sbjct: 181 PTSSILVDRLIDVVVSAALRAWLERGCGNARAWLAQAHDPHLGRALEAIHAEPGSSWRVE 240 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA +AH SR+ FA+ FR G +P +T +R++ A ++ V +A ++GY S+ Sbjct: 241 DLARLAHSSRSQFAERFRSSVGESPARYVTGVRMRRAEELLR-TGRGVSEVAFALGYDSD 299 Query: 258 SSFHKAFVREFGCTPGEYRER 278 F +AF R G P E+R R Sbjct: 300 EGFSRAFRRHSGLAPSEWRRR 320 >UniRef50_Q0K0F9 Transcriptional regulator, AraC-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0K0F9_RALEH Length = 308 Score = 186 bits (472), Expect = 9e-46, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 119/301 (39%), Gaps = 30/301 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFT 60 D L+ +L L + Q + G W L +++ + +GA L + Sbjct: 4 DPLTDILTLASAQCVDVGSLAAGGSWALRFP--PPGQLKFMVVVKGACWLTIEGMTAPRE 61 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC-----------------------IVCGTLRLQHS 97 + G+V +LP + A L+ ++ V + L Sbjct: 62 VTRGDVFVLPADLAFVLASDLQTASVDGRELFSGALESKVTLGHGLDFFAVGAHIALDRE 121 Query: 98 ARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 L+ LP L + +S E ++ + L QE S PGV Q+ A Sbjct: 122 RGKLLSEVLPPYLHIG--GNSAEAAVVQWLLNQLVQELVSERPGVALATRQLAQLLCVQA 179 Query: 157 VREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R ++ A + L RL ++ M PG AW + LA MSR+SFA F+ Sbjct: 180 IRSYLDASGPCVAGWVKALSDERLAPALRLMHREPGRAWELGQLAKEVAMSRSSFAIRFK 239 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +G PL L LR+ +A +P+ + S+GY+SES+F AF R G PG Y Sbjct: 240 AGAGIPPLTYLQNLRMCLAEYELREGVMPISELGRSLGYSSESAFSSAFKRSSGMAPGRY 299 Query: 276 R 276 R Sbjct: 300 R 300 >UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=Pseudomonas RepID=Q88GS8_PSEPK Length = 306 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 27/295 (9%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLRPGN 65 LL ++ W + +H + QG L + + L G+ Sbjct: 11 LLESLELDASLFHVGRYCGGWH--ASTQGMGRASFHLVVQGHCWLHIDGQPQAICLEKGD 68 Query: 66 VVLLPQNSAHRLSHVDN--------------------ESTCIVCGTLRLQHSA-RYFLTS 104 V L ++ A+RLS + + +VCG Q + Sbjct: 69 AVFLLRDLAYRLSSDQDPVDACAQPRQAMQALDSQAADGVGLVCGFFHFQSGLCSLIVEG 128 Query: 105 LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV 164 L + + L + S R + +E R L ++ F +R+ + Sbjct: 129 LADWILLRAEDPSGSAA--RALFGLILEECRRDAGPSQMLLERLTHLLFLYVLRQQVHAG 186 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 + +++L P +++Q++E PG WT+E++A+ +SR++F + F +++G +P Sbjct: 187 QSLGGLVALARQPAFAGLLEQLIEHPGQTWTMENMAACTGLSRSAFFKRFSELAGQSPGQ 246 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 VL LR++ A+Q+ + V + VGY S ++F +AF + G PG YR + Sbjct: 247 VLLALRMRHASQLL-QAGHTVEQVGAQVGYQSVAAFTRAFAKAVGVQPGAYRRQH 300 >UniRef50_A5V6I7 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V6I7_SPHWW Length = 319 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 122/321 (38%), Gaps = 44/321 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L + L W + + A G+ + + G Sbjct: 1 MDLLNSVLQSLKIIDSSLGILELAPPWGFRRDTIPKDMATFIAPMSGSCLVRLDDGTTVE 60 Query: 61 LRPGNVVL---------------------------LPQNSAH------------RLSHVD 81 ++PGN VL LP H D Sbjct: 61 MKPGNAVLILRDAFDIVSADGSPTKSFVESWTAQGLPAMGPHIERSGPDYFCAIDHERPD 120 Query: 82 NESTCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 ++ ++ + A L LP+ ++ +E + F++ E R PG Sbjct: 121 EHRDRLLAVAVQAEDVAESPILGVLPQM--ISFDEKELEPALIGTVAQFVEAEHRQPNPG 178 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 +A Q+ F VR + T++ + + + +G ++ + + W++++L Sbjct: 179 YNATAQQLANFLFIALVRNHVLSNGTDRASWIRGMSDRAIGHALKLIHQAFDKPWSLQNL 238 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A + +SR+ FA FR + G TP+ L +R+ AAQ+ PV + + VGY SE + Sbjct: 239 ARASGVSRSVFAARFRTLVGQTPMTYLAAVRMHAAAQLLIDGQ-PVSNVCQRVGYRSEWA 297 Query: 260 FHKAFVREFGCTPGEYRERVR 280 F KAF ++FG P Y + +R Sbjct: 298 FRKAFRQQFGMMPARYGKSLR 318 >UniRef50_A1UBR1 Transcriptional regulator, AraC family n=5 Tax=Mycobacterium RepID=A1UBR1_MYCSK Length = 320 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 64/295 (21%), Positives = 113/295 (38%), Gaps = 28/295 (9%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNV 66 L+ L P+ K +W + + + + +G+ L + L G+ Sbjct: 27 LVSLLRPKTVESKIISGAGEWSVREP--RYADPAFCVMLEGSCVLRLDGYHPIELHAGDF 84 Query: 67 VLL----------------------PQNSAHRLSHVDNEST-CIVCGTLRLQHSARYFLT 103 +LL P N R D ++ ++ G R + L Sbjct: 85 MLLTDMPEFVMSSGHGAMSTVLAAGPVNGVARHGDPDGPASMRMLGGYFRFERENAPLLA 144 Query: 104 SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ 163 L + L + + L + + +E+ SA P + + ++ A+R A Sbjct: 145 PLLPRIVLVRHDEPR-ASRLSRIVALISEETGSAAP-SELILVRLVEVLLVEAMRLRAAP 202 Query: 164 -VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTP 222 E+ +++ L P L +++M WTVE LA A +SRA FA+ F G P Sbjct: 203 VEGVERGLVAGLDDPVLAPALRKMHTDIAFGWTVERLARAAGVSRAVFAERFSRTMGMPP 262 Query: 223 LAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + L + R+ +A +M E + + +A GY S S+F AF R G +P + Sbjct: 263 MQYLAQWRMALAKEMLRTEDVSIAEVARRTGYLSASAFTTAFTRMTGTSPSAFAR 317 >UniRef50_Q2SZ66 Transcriptional regulator, AraC family n=31 Tax=Burkholderia RepID=Q2SZ66_BURTA Length = 319 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 103/279 (36%), Gaps = 9/279 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L LL + L A + H + GA + T + + Sbjct: 31 DRLKGLLARFELHARVFHFGTLPGASTFDICADGFHM---HLVRTGAVCVTGGTLGLHAV 87 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEY 120 + V + + +R+ + I+ + L LP+ L + + S Sbjct: 88 PEPSAVFIGRPGKYRIEARGDAPVEILSAAIEFGLGDENPLLRGLPDLLAIPLASMSP-- 145 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L L E+ + G D + +++ +R + L+ L RL Sbjct: 146 --LDGVQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRLVASGSLAGLSDARLA 203 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + P +W++E +A+IA MSR+ FA F D G P L + R+ +A + R Sbjct: 204 KALNAVHADPALSWSLERMAAIAGMSRSRFAAHFADTVGLPPGEYLLQWRVGLAKTLLRR 263 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 V IA VGY S S+ +AF + G P ++ R Sbjct: 264 G-YAVKEIAPEVGYGSASALTRAFAQCTGHAPTDWLARA 301 >UniRef50_B1M4B9 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M4B9_METRJ Length = 326 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 25/301 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS L L + +D C G W H A + +H +T+G A L P G + Sbjct: 19 DPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHLVTRGRATLRRPGGAPLQV 78 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTC-------------------------IVCGTLRLQH 96 G+++LLP+ AH + ++CG L + Sbjct: 79 AAGDILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTTVGAEPDVELICGRLAFEA 138 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + R + + L + V + +++E G A+ + + F + Sbjct: 139 APRTLIVTALPDLLVLSVGAEPLATRFAPLLAGIREELNDLRAGSVAVAENLASALFMMM 198 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + + +L LL P + M+ P H WT+++LA+ A SRAS + FR Sbjct: 199 LRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDALAATAAASRASLVRAFRA 258 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G PL LT LRL +A ET+ + +A VGY S ++ +AF+R++G PG+ R Sbjct: 259 AAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAAALSRAFLRKYGIRPGQAR 318 Query: 277 E 277 + Sbjct: 319 Q 319 >UniRef50_C7PWW7 Transcriptional regulator, AraC family n=13 Tax=Bacteria RepID=C7PWW7_CATAD Length = 330 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 122/327 (37%), Gaps = 51/327 (15%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD ++ LL G +L W L + + + A+ G A + T Sbjct: 1 MDVIAGLLNGPRADGAFLLRSLLTPPWSLR--VQDQAPLTLVAVISGTAWVLPDPESSTT 58 Query: 61 ---LRPGNVVLLPQNSAHRLSH-------------------------------------V 80 L G++ +L + + Sbjct: 59 ATCLHQGDLAILRGPDPYVFADDPATQPQAVIHPGQRCTTPDGEDLGDMRALGTRSWGNA 118 Query: 81 DNESTCIVCGTLR-LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 + +T +V GT + L L++LP L IP L E P Sbjct: 119 PDGATVLVTGTYQVLSEICAPLLSALPALAVLRDGECDT------PLIPLLADEVARDTP 172 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G DA+ ++ +A+R W+A+ + E P +G ++ + + P H WTV + Sbjct: 173 GQDAVLDRLLDLLTVVALRTWLARPDVETPAWYRAQDDPVVGTALRLIHDDPAHPWTVAA 232 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA AH+SRA+ A+ F G P+A L RL ++A + + +AE VGY S Sbjct: 233 LADAAHVSRAALARRFAAEVGEPPMAYLANWRLALSADLLRDPASTIASVAEQVGYGSAF 292 Query: 259 SFHKAFVREFGCTPGEYRERV-RQLAP 284 + AF R G +P E+RER R P Sbjct: 293 ALSAAFKRVRGISPKEHRERASRDATP 319 >UniRef50_Q3BY04 Transcriptional regulator, AraC family n=2 Tax=Xanthomonas RepID=Q3BY04_XANC5 Length = 355 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 30/299 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS++L + DW L E ++ A +G + +P + Sbjct: 54 DPLSQVLAALGARSAGLNRLEARGDWALSFP--EKHRLKLVAAIRGECWIRLPRRAPKRV 111 Query: 62 RPGNVVL--------------------LPQNSAHRLSHVDNESTCIV-CGTLRLQHSARY 100 G+V+L L L D + T ++ G L ++ + Sbjct: 112 VEGDVLLIGNTPYVVASDPQCVPVDGVLRYAGQESLRLGDGDDTVLLGAGILFSGENSGF 171 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 + +LP + + V+ S +R + L E G + S + A+R + Sbjct: 172 LIDALPRLMKIQSVSPSAFA--VRTTLDLLDAEMGRHRMGSARVASCLSEVLVVEAIRAY 229 Query: 161 IAQVNTEK-----NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 + + + + L +GA + M HAWTV LA MSR++F+ F Sbjct: 230 MHENKEAHTQAHISWIGALGDRHIGAALALMHGDVAHAWTVAELALRVGMSRSAFSSRFS 289 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 G PL LT+ R+ +A ++ + L + +AE VGY S S+F AF R FG P Sbjct: 290 QTVGQAPLHYLTQWRMLLAHRLLAETGLDIAHVAERVGYQSPSAFSHAFKRMFGAAPRR 348 >UniRef50_A6SWK7 Transcriptional regulator, AraC family n=3 Tax=Burkholderiales RepID=A6SWK7_JANMA Length = 323 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 76/304 (25%), Positives = 129/304 (42%), Gaps = 34/304 (11%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 L LL T C + W + A + + + H +G L + L Sbjct: 11 ILDHLLAALDIGVTHFTVCDIRDGWGMRLDACQSASL--HYCLEGRGTLTVHGSPPIQLE 68 Query: 63 PGNVVLLPQNSAHRLSHVDNESTCI-----------------------------VCGTLR 93 P VLLP A+R+ +ES + VCG +R Sbjct: 69 PHTFVLLPSGIAYRIESASHESIQLEHRISLCGSFSHESVPTLVVGNGLQGIVTVCGEIR 128 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 ++ ++ L + + +A N + N LR+ L ES G L + Sbjct: 129 VELASGSDLFTSLDVPLVARFNGA---NGLRDQFVMLLAESTQPGIGSSVLTEALLKQCL 185 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 LA+R+W + L+ + RL + + E P A+TV+SLA IA MSR++FA Sbjct: 186 VLALRQWGENDPSPLPWLAAVGDKRLSRALHAIFEHPAIAYTVDSLAMIAGMSRSAFAAA 245 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F+ G +P++++ +RL+ A+++ +PV +A+ VG++S S+F AF + +G P Sbjct: 246 FQRAFGQSPMSLVRLVRLRRASELLITTAIPVAEVAKRVGFSSRSNFSLAFSQLYGLDPS 305 Query: 274 EYRE 277 +R Sbjct: 306 RFRR 309 >UniRef50_B9QZW4 Transcriptional regulator, AraC family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QZW4_9RHOB Length = 268 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 5/195 (2%) Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 + + IV + + + +LP L + + L + L +E G Sbjct: 75 DESIIVSTNIEISGVGKRLFAALPICLSVDLADD----PSLSSVVMPLVEEVMRPRCGGQ 130 Query: 143 ALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 A+ ++C +R + + +L+ L PR+ + + E PG WT+E LA I Sbjct: 131 AVFQRLCEIVVIRLLRHAMEGNEIDSGLLNGLSDPRVAQALVAIHEEPGENWTLERLAEI 190 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 A MSR FA F+ + G TP+ L+ RL IA + V +A G++S +SF + Sbjct: 191 AGMSRTQFAVTFKSLIGITPMTYLSNWRLDIARDELAAGRQ-VKAVANMCGFSSPASFSR 249 Query: 263 AFVREFGCTPGEYRE 277 AF + +G P R+ Sbjct: 250 AFAKRYGAPPRRARQ 264 >UniRef50_A8GL35 Transcriptional regulator, AraC family n=2 Tax=Serratia RepID=A8GL35_SERP5 Length = 257 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 5/199 (2%) Query: 79 HVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 + E IV + + +LP+ + + L+ E++S Sbjct: 59 PPEGEFAVIVSAGVDFSGELNPLVGTLPDRMDFLLADTPA----LQGVADLFIGEAQSPR 114 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G ++ ++C L +R IA + +L+ L HP L + M + P W+VE Sbjct: 115 CGTVSVQDRLCEVIIVLVIRRAIAAGAVKAGMLAGLAHPALHRSLVAMHDEPACKWSVER 174 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA A MSR+ F + F V G TP A LT RL + + V +A VG+ S Sbjct: 175 LAQTAGMSRSHFIERFGTVVGETPGAYLTAWRLTLGRKALM-SGRSVKQVAYQVGFGSVE 233 Query: 259 SFHKAFVREFGCTPGEYRE 277 +F +AF ++G P ++ Sbjct: 234 AFSRAFSAKYGVPPSSVKK 252 >UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regulator n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJP1_9SPHN Length = 350 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 119/317 (37%), Gaps = 43/317 (13%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIFTL 61 + LL + G + L + W E +++ H +T G + + L Sbjct: 22 PVDDLLRMIRLTGMMQVFSHLTAPWACAFPPEEDAIV-LHLVTAGKCVAYVTKRDDPIAL 80 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTC----------------------IVCGTLRLQHSAR 99 G+ +L+ H L + R Sbjct: 81 VGGDALLVTPPVVHTLGDGPRSPAVPLVDLVPSPLKNAGSADEYLSNLFTQDYRFGGGGA 140 Query: 100 Y-----------------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 L SLP+ + L P + + ++ + + + + G+ Sbjct: 141 PALIYTLRMYLDRRFPTAILQSLPKLVRL-PGFVTRKAPFVEQLTSLIGEHGKQGFMGL- 198 Query: 143 ALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 A+ +++ T +++ + ++ L P L +++ + E PG WT+ +LA Sbjct: 199 AIATRLAEGVLTACIKDHLEATFQIVDVGRGLNDPLLSGMLRAIQEDPGRDWTILNLAER 258 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 A MSR++F F V+G P +T +R+ A ++ + P+ IA +GY+SE+SF + Sbjct: 259 AKMSRSAFINRFTRVTGQKPNEFVTSMRMMQAMELLEKSGTPIAHIATEMGYSSEASFTR 318 Query: 263 AFVREFGCTPGEYRERV 279 AF R F TPG R R Sbjct: 319 AFHRWFKVTPGTVRRRQ 335 >UniRef50_B5Y1B2 Transcriptional regulator, AraC family n=1 Tax=Klebsiella pneumoniae 342 RepID=B5Y1B2_KLEP3 Length = 317 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 123/298 (41%), Gaps = 25/298 (8%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IFTLRPGN 65 LL + + ++ W+ G +H + +G L L G+ Sbjct: 7 LLDNLSIENSVFHVGKYCGSWK--GGTSGSGKASYHLVMEGHCWLHCAQHSSALRLEKGD 64 Query: 66 VVLLPQNSAHRLS--------------------HVDNESTCIVCGTLRLQHSARYFLTSL 105 +V + Q+ LS + D ST + CG + + + L S Sbjct: 65 MVFILQDCPFVLSSHENAQSAYRAPVQEMQPLTYKDETSTALACGFITFKTTISQMLLSF 124 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN 165 + + + + + + + +E+ + L + + F + +R +++ Sbjct: 125 LPQVIVFKAQDDRSGS-IGKLVAVINREATQTALRSEKLIASLTELLFFMVIRHYLSSHT 183 Query: 166 TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAV 225 + + ++ L ++ +++ P WTVE++A + +SR+ F Q F VS +P + Sbjct: 184 VKTPLDNIPLTTEFLNLMAEIVLFPARPWTVEAMARASGLSRSWFIQRFNQVSPLSPAEI 243 Query: 226 LTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 + +R+ +A Q + + + AE VGY S+++F++AF R G TPG Y ++ R A Sbjct: 244 VRHIRIALACQHIA-GGVSLTQSAERVGYLSQAAFNRAFQRITGVTPGRYSQQCRDNA 300 >UniRef50_A3Y511 Transcriptional regulator AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y511_9GAMM Length = 311 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 1 MDALSRLLMLNAPQ--GTIDKN-----CVLGSDWQLPHGAGE-------LSVIRWHALTQ 46 MD L+ LL PQ SD L A + Q Sbjct: 1 MDRLTSLLNHFRPQVKSVNYVRQHRDNSEQASDASLIQDAQTNASLSLSADSSYLLYIAQ 60 Query: 47 GAAKLE----MPTGEIFTLRPGNVVLLPQNSAHRLSHV--DNESTCIVCGTLRLQHSARY 100 G M T G+++ L +L + + ++ +VC S Sbjct: 61 GTLSFVEQDFMLGAPEETFTQGSILWLAAGCELKLDPLAQEQDAAILVCEYDFGLASLNP 120 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 L + ++ + + + L QE G + ++ +R Sbjct: 121 LLDT--QSKLVGVGQEDDIALAIAPIMAVLMQELDKLSCGFQVVSERLAEALLVQFLRLL 178 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 + Q +L+ L +L I + + P AWTVE LA A MSR +F FRD G Sbjct: 179 MQQKRLPFGLLAALSDDKLARAIVAIHDQPAQAWTVERLAQQAGMSRTAFNNAFRDKLGH 238 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 TPL +T R+++A Q + + ++ +GY SE++F +AF + G PG+ R+R + Sbjct: 239 TPLEYVTLWRMRLANQKLRQGQHNLAALSLELGYQSETAFRRAFKKNLGFAPGQVRKRQQ 298 >UniRef50_A3ZY19 Probable transcriptional regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZY19_9PLAN Length = 323 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 19/292 (6%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + L+ + + L L L+ +H + G ++E+ L Sbjct: 24 DLTASLINHLKMRCLVTHVSDLQPAAPL---TLTLAAPMFHYVVSGRCQVELSDQSPAVL 80 Query: 62 RPGNVVLLPQNSAHRLSHVDNEST-----------CIVCGTLRLQHSARYFLTSLPETLF 110 G++++ +N L + I+ G R+ S L L Sbjct: 81 SAGDLIVDFRNVRQVLRSFGESAESPFGEPQPRYNRILSG--RIHSSGIEILPGLCNVPH 138 Query: 111 -LAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-K 168 + + L +P + E G A+ + + +RE + + + Sbjct: 139 SIFRAAEWGDDGLLGRILPLITPELIGDRQGGIAVVNLMLTLVIVEILREQLTTLRADST 198 Query: 169 NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTK 228 L + ++ ML P + W+VE LA++ M+R++FA+ FR+V G P+ VLT Sbjct: 199 GWLKAFQDEAISPILAAMLRQPEYPWSVERLAAVNCMARSTFARRFREVVGEAPMDVLTT 258 Query: 229 LRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +R+QIA + + IA VGY S S AF R FG +P ++R +R Sbjct: 259 IRMQIAID-LVKAGANLKDIARRVGYGSIQSLTSAFRRRFGVSPAQFRSNLR 309 >UniRef50_Q47ES4 Transcriptional regulator, AraC family n=2 Tax=Betaproteobacteria RepID=Q47ES4_DECAR Length = 300 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 7/264 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS LL AP+ + N +L A + H L +G +L P T Sbjct: 27 LDRLSALLEGLAPR--VQVNLPPAGIARLNFAAEAPPFLHIHLLAEGEMRLH-PGSASLT 83 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES-TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVE 119 L+ +V+ ++AH L E+ ++C L L + + PV+ + Sbjct: 84 LQAPCIVVCRSDTAHALETPSAETFQRLMCARAWLDGPVAPLLLNEFAAPLVVPVDGAE- 142 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 + LR I + E + G AL + F +R IA T +L+ L PR+ Sbjct: 143 -SSLRHVINLISSELEAPRCGQPALLDRAGDILFIGLLRHLIAHPKTAGGLLNGLADPRI 201 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 + + P WT+E LA A MSR +FA FR+V TTP L+ +RL IA + Sbjct: 202 ARALVVIHARPQDKWTLELLAEEAGMSRTAFANTFREVMRTTPGKYLSTIRLAIAQRA-V 260 Query: 240 RETLPVVVIAESVGYASESSFHKA 263 + + A GY S S+ +A Sbjct: 261 QSGKGLKAAARDAGYNSTSALSRA 284 >UniRef50_Q13NB1 Transcriptional regulator, AraC family n=6 Tax=Burkholderia RepID=Q13NB1_BURXL Length = 359 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 71/317 (22%), Positives = 112/317 (35%), Gaps = 45/317 (14%) Query: 2 DALSR-LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-----T 55 D L+ LL + T+ WQ + +H + G L +P Sbjct: 22 DKLADWLLSSLELKSTVFHVGQYCGTWQASTAGRRRA--SFHVVLHGECWLHLPASAERE 79 Query: 56 GEIFTLRPGNVVLLPQNSAHRLSHV----------------------------------- 80 L G+ V L ++ H LS Sbjct: 80 AHSLRLSSGDAVFLLRDMPHCLSPDFRPPASGHESARFGTMSPLTPPPAAPTTSPTAPAT 139 Query: 81 DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 S I CG + L SL + ++ + R ++ E+ Sbjct: 140 ATTSVGIACGFFEFNSALDDMLLSLLPD-HIVARRNNPSLDGARAIFDLIRVEALRDAQT 198 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 L +++ F A+R A+ SL+ ++ ++E PG WT ++A Sbjct: 199 PSPLIARLTDLLFVYALRALGAEDEIVPCFWSLMRRAEFAPLVTAIIESPGERWTTGTMA 258 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 HMSRA F + F D++G P +T +R+++AA M AE VGY SES+F Sbjct: 259 HFVHMSRARFCKQFVDIAGQPPAQFVTLIRMKLAAAMLRSGART-PDAAERVGYQSESAF 317 Query: 261 HKAFVREFGCTPGEYRE 277 +AF R G PG +R Sbjct: 318 SQAFKRVTGVQPGAWRR 334 >UniRef50_Q0S0T6 Transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S0T6_RHOSR Length = 294 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 5/244 (2%) Query: 41 WHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARY 100 + ++ G A L + E L G++V+ P+ AHR ++ + Sbjct: 49 FSYISAGTAALRV-GQERSELSAGDLVIYPR--AHRAEIRARRECNVINAWFLPSGGSAQ 105 Query: 101 FLTSLPETLFLA--PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L + P TL + V + + S G +CS I T + A+R Sbjct: 106 TLGTFPNTLLVREFSVREPNMAMLIEGMLSGQANASDFNRAGDAVVCSLISTTIVSSAIR 165 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 W + L + P + + + E PG WTV++LA +A MSR++FA F + Sbjct: 166 LWAELGCAPERWLHQVSDPFIARALDAIHESPGDPWTVQNLAQVATMSRSAFAVRFTTLV 225 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G TP + LT +R++ + + R+ L + A +GY SE+ F +AF R G P +R + Sbjct: 226 GQTPASYLTDVRMETSKTLLIRDGLSIAETAHRLGYESEAGFRRAFRRHTGSAPAAWRGQ 285 Query: 279 VRQL 282 R L Sbjct: 286 QRSL 289 >UniRef50_B6R0G1 Transcriptional regulator, AraC family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R0G1_9RHOB Length = 270 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 7/210 (3%) Query: 66 VVLLPQ--NSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWL 123 +V LP N+ + + +++ + + T+LP+ + + + L Sbjct: 56 LVFLPSSPNNPTEIKRICDDTIVLAGARVEFGGPGSQLSTALPDYVEIYL----QDAPEL 111 Query: 124 REAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVI 183 + +E S G A+ +++C +R + +++ L HP L + Sbjct: 112 ESLADLMVEEVLSPRCGGAAVINRLCEVVVIRLLRHAVRSGAACSGLIAGLAHPNLAQAL 171 Query: 184 QQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETL 243 + E P W +E+LA +A MSR FA F+DV G TP + L+ RL +A Sbjct: 172 VAIHEEPAKQWRLETLAEVAGMSRTQFAVHFKDVMGETPGSYLSNWRLALAKLDL-EAGR 230 Query: 244 PVVVIAESVGYASESSFHKAFVREFGCTPG 273 P+ +A VG+AS ++ +A+ R + P Sbjct: 231 PLKSVAARVGFASPTALSRAYQRRYNELPR 260 >UniRef50_A6T2N0 Transcriptional regulator, AraC family n=9 Tax=Proteobacteria RepID=A6T2N0_JANMA Length = 310 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 69/302 (22%), Positives = 116/302 (38%), Gaps = 26/302 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ L P+ K W + G + + + + +G + M + Sbjct: 3 DPLTSVVTLLQPKMAYSKIVTGAGRWGVR-GEFDDAPLFCCVVLEGKMR-YMVDESPLIV 60 Query: 62 RPGNVVLLPQNSAHRLSHVD-------NESTCIV------CGTLRLQHSARYFL------ 102 G+ +L+P S +S + ++ G L ++ R + Sbjct: 61 EAGDFLLIPSMSKFSVSSFEVPADHEWQTEPALLENGEHRNGLLSVEADVRTLVGFCHLT 120 Query: 103 --TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 S L + H L + + ESRS P + + ++ A+R Sbjct: 121 SPDSALLLTLLPKLVHIRGDLRLSALVQLVIDESRSQRPAREVVLERLLEVLLIEALRSS 180 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 T +L L RL I+ + E P WTV LA + +SR++F + F G Sbjct: 181 -NNAGTSPGLLRGLADIRLANAIRCIHESPEQPWTVALLAKASALSRSTFFERFSAALGV 239 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 TP+ L R+ +A R + +A VGY+S S+F AF R G PG+Y + R Sbjct: 240 TPMDYLLSWRMALARNFLER-KKTIAEVAALVGYSSSSTFTVAFTRHTGMPPGQY-SKSR 297 Query: 281 QL 282 QL Sbjct: 298 QL 299 >UniRef50_C6WK58 Transcriptional regulator, AraC family n=3 Tax=Actinomycetales RepID=C6WK58_ACTMD Length = 337 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 116/303 (38%), Gaps = 24/303 (7%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ L + +G++ G W A L+ + + +T+G L +G + Sbjct: 5 DVLADALRMRGARGSLGVRLEAGGCWGARVDALPLASL--YLVTEGQVWL-GTSGSALRI 61 Query: 62 RPGNVVLLPQNSAHRLSHVDN---ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 G V +P+ H L E + + A L P L + + Sbjct: 62 DAGCAVHVPERVPHVLVSEPGALAERCDLDAACAAMASGAVLRLGDGPVRARLITAYYEL 121 Query: 119 EYNWLREAIPFLQQESRSAMP----------------GVDALCSQICATFFTLAVREWIA 162 + +A P L G A + I R W+A Sbjct: 122 GDSLFPDAFPVLVTAEERPQLAATAALLAAELAEPQFGTTAAVNSIVDLLLVQFARAWLA 181 Query: 163 QVNT--EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 ++ L LL P + + +M P AWT +LAS ++SRA+ ++ F G Sbjct: 182 ANPVARSRSWLGALLDPLVREALTRMHGEPARAWTTANLASALNVSRATLSRRFPLALGE 241 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 P A LT+LR+ +AA P+ +AE+VGY S +F +AF R G +P +YR R R Sbjct: 242 PPGAYLTRLRMDLAAIRLRDTDEPLESVAEAVGYGSGKAFSRAFQRSRGRSPSDYRFRAR 301 Query: 281 QLA 283 Sbjct: 302 HRG 304 >UniRef50_B5GNS1 AraC-family transcriptional regulator n=2 Tax=Streptomyces RepID=B5GNS1_STRCL Length = 377 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 8/214 (3%) Query: 69 LPQNSAHRLSHVDNESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAI 127 P+ +T ++ G +++ S + LT+LP + V + Sbjct: 167 FPEGPFGPGPADTAGTTVLLKGVYQVEGSVSDRVLTALPRVALVPSVPEGCPP------L 220 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQM 186 + QE +PG + ++ ++REW A ++ P++G ++ M Sbjct: 221 AMIAQELARDIPGRQVILDRLLDLLLVTSLREWFALPGSDAPAWYRAHGDPQVGRALKLM 280 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 P WTV SLA+ SRA FA F ++ G +P+A LT+ R+ AA + +R V Sbjct: 281 HGDPARPWTVASLAAAVGASRARFAHRFTELVGQSPMAYLTEWRICRAADLLARTDATVD 340 Query: 247 VIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 ++ VGY++ + AF R G P E+R R Sbjct: 341 AVSRQVGYSNAYALSVAFKRTRGVRPSEHRALAR 374 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 2/87 (2%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS LL PQG + W L + G A + E L Sbjct: 3 DALSSLLHGVRPQGALFDQSAFVPPWSLRFEERTPLALLTMFT--GTAWVIPDGAEPVRL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIV 88 P +V ++ + ++ + V Sbjct: 61 SPCDVAIVTGPEPYTVADSPGTAPLAV 87 >UniRef50_B6YYF5 Transcriptional regulator, AraC family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YYF5_9RHOB Length = 302 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNV 66 +L Q C L L L+ + H + G +L +P +R G++ Sbjct: 6 ILDEMEIQAHPFALCELNGACDLDLDKDPLATL--HYVLAGEGELVLPGRPAIPVRKGSL 63 Query: 67 VLLPQNSAHRL---------------------------SHVDNESTCIVCGTLRLQHSAR 99 +L+P H L D +C + L + Sbjct: 64 ILVPALKKHVLRSFGQVQDPIPSCNPDKLKMAHLIHSSESQDKGQLIAICSRISL---SL 120 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 + +L + + V + + I L E + PG A+ + +R Sbjct: 121 RQMENLIDLVQEPIVEYQAGEDACEAPIRRLLLELANPAPGSLAMVRALLMQCMIELMRR 180 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 + ++ L PR+ V++ +L+ PG +VESLAS+A MSR+ FA+ F++ G Sbjct: 181 RFNDQHGGLEWMAALRDPRMWPVLRHILDTPGEPHSVESLASLAGMSRSGFAKRFQEAYG 240 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + P+ +L +R++ AA M P+ ++ +G+ S S+F +AF G +P ++R + Sbjct: 241 SGPMELLRDVRMRRAATMLLETDHPIERVSHLIGFRSRSAFSRAFEAAIGISPQKFRMQR 300 Query: 280 RQ 281 + Sbjct: 301 KN 302 >UniRef50_B4E7R7 AraC family regulatory protein n=8 Tax=Burkholderia RepID=B4E7R7_BURCJ Length = 319 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 72/300 (24%), Positives = 121/300 (40%), Gaps = 34/300 (11%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLRPGN 65 LL P+ + DWQ + +H + G+A L G + + G Sbjct: 12 LLSSLEPRSQLFHVGQYCGDWQ--ASTAGRAKASFHVILHGSAWLHFADGRDSIPVAAGE 69 Query: 66 VVLLPQNSAHRLSHVD---------------------------NESTCIVCGTLRLQHSA 98 V L ++ H LS + S + CG + + Sbjct: 70 AVFLLRDVPHGLSPSPVNPQVCAVAGGHPLERRGSMQPLDPSVDGSVGLACGFIEFHSTV 129 Query: 99 RYFLTSL-PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 + SL PE L + + + Y + ++ E R + L ++ AV Sbjct: 130 SRAIVSLFPEYLIVRRGDDA--YRGIHGLFDLIRAEGRYGVDAPSPLIDKLVELLLFYAV 187 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R+ + SL+ G +I +++ P AWT +S+A+ A+MSR +F + F + Sbjct: 188 RDAAGHDTVASGLASLMQRTGFGTLIAAIIDAPADAWTTDSMAAFANMSRTAFCKHFSEA 247 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 SG P+ +T +R+++AA + + LP+ E VGY SES+F AF R G PG +R Sbjct: 248 SGHPPMQFVTMVRMRLAADLLQQG-LPISRAGELVGYQSESAFAHAFKRTMGMQPGAWRR 306 >UniRef50_C7Q0G5 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q0G5_CATAD Length = 325 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 118/319 (36%), Gaps = 52/319 (16%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEM---PTGE 57 MD LS LL + + W + + + A G A L + P+ Sbjct: 1 MDTLSDLLRRAGAGDAQVRQLIQRPPWSITYADAPALTVF--ATLGGQAALRLEDVPSVP 58 Query: 58 IFTLRPGNVVLLPQNSAHRLSH-------------------------------------- 79 L G++ L+ ++ H +S Sbjct: 59 PVRLAAGDIALVAHSTRHTISDDLATPPQVLIRDGRKQLLGDPSTHAALEANLAPRTWGD 118 Query: 80 VDNESTCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 +T ++ G +L+ A R L LP + + A+ L E+ Sbjct: 119 GLPGATTMLRGMFKLRGEAGRRLLAMLPPLVVIP------AAPRTGAALDLLAAETTLDE 172 Query: 139 PGVDALCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 PG DA+ + LA+R W A + + + L P +G+ + + P H WTV Sbjct: 173 PGQDAVLHRSLDLVLVLALRSWCASLGPADPSWYAALTDPAIGSALDHIHTDPAHHWTVA 232 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE-TLPVVVIAESVGYAS 256 LA+IA +SRA+FA F + G P+ L R+ +AA + + V A++VGY Sbjct: 233 ELAAIAGLSRAAFAARFTQLVGQPPMTYLAGWRMTLAADLLREDAGTTVAAAAQAVGYQD 292 Query: 257 ESSFHKAFVREFGCTPGEY 275 +F AF R G +P + Sbjct: 293 AFAFSVAFKRAKGMSPSRW 311 >UniRef50_D0L3G6 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L3G6_GORB4 Length = 327 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 114/319 (35%), Gaps = 54/319 (16%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDAL LL A + W + + S + A+T+G G + Sbjct: 1 MDALDGLLRGPAATHPTTLRMAMTDRWAIR--IEDSSALTLVAVTEGVGVAGYDDGTEYE 58 Query: 61 LRPGNVVLLPQNSAHRLSH----------------------------------------- 79 L G V L+ + +S Sbjct: 59 LGVGCVALIRGTEPYTVSDRARSPVIAHIDEDGRCFDPTGRHSVAEQMSVGVRTWGNRRP 118 Query: 80 ---VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRS 136 D+ T ++ T R +R + SLP L + + + E Sbjct: 119 QAASDSRDTTMLIATYRAGEISRQVVESLPRISVLDHPDD--------PLVALAEAEIVR 170 Query: 137 AMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTV 196 +PG + + ++ A+R+ + + + P +G + M PGH WT+ Sbjct: 171 TLPGQEVVIDRLVDLILITAIRDLMDRSDAPPAYFRASRDPVVGPAVALMHTNPGHPWTL 230 Query: 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYAS 256 +A +SRA+ A+ F ++ G P+ LT+ RL +AA + + + + IA VGY S Sbjct: 231 AGIAQSVGVSRATLARRFTELMGEPPIGYLTRWRLALAADLLADPDISLRAIAHRVGYGS 290 Query: 257 ESSFHKAFVREFGCTPGEY 275 + AF REFG +P Y Sbjct: 291 PFALSSAFTREFGMSPTRY 309 >UniRef50_C1YFP1 DNA-binding domain-containing protein, AraC-type n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YFP1_NOCDA Length = 345 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 96/208 (46%), Gaps = 8/208 (3%) Query: 78 SHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSA 137 + +T +V + L +LP TL L SV WL A L SR Sbjct: 131 GAPEGATTLLVAAYRATRSRHERLLRTLPRTLVLTEDAESV--FWLEAARDAL---SRRH 185 Query: 138 MPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTV 196 +PG AL ++ ++ W Q + + P G ++ + P WTV Sbjct: 186 LPGGQALVDRVVDMGLVCSLACWFEQEGADAPAWYRGAVDPVTGPALEAVHRRPHEPWTV 245 Query: 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYAS 256 +LA+ A +SRA FA+ F +V G +PL LT+ R+ A ++ S L V +A +VGYA Sbjct: 246 GALAARAGVSRALFAKRFTEVVGQSPLGYLTEWRMYTAEELLSDPDLSVAKVAGAVGYAD 305 Query: 257 ESSFHKAFVREFGCTPGEYRERVRQLAP 284 SSF AF R G +P E+R +R L P Sbjct: 306 PSSFSTAFKRLRGLSPREFR--LRNLLP 331 >UniRef50_A9FWP2 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWP2_SORC5 Length = 304 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 20/286 (6%) Query: 10 LNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLL 69 L G + G+ W GAG+ + H + QGA +L L G+VVLL Sbjct: 9 LPRGMGVSRHHGHPGAPW--RAGAGDPPSL--HVVVQGAFRLSQDGVCALELDAGDVVLL 64 Query: 70 ---PQNSAHRLSH-------VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVE 119 P+ + R D + + L SL + L P Sbjct: 65 GFGPRGAGPREQSLRCVAPPPDRAPAEAELISATYAAAPGTALASLAPVVHL-PAGEVRR 123 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNIL-----SLL 174 L + L+ A P L + A+ + + Sbjct: 124 APGLSAVVGLLRAALAEASPAQAHLARSLLEPLLAYALHCHEHAREGRSSRALDRRGARA 183 Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 R+ V++ M E P W+VE+LA A +SRA+ A+ F G PL L +LR+Q A Sbjct: 184 FDRRVARVLRLMQEKPAERWSVEALAKAAGLSRAALARRFLAELGVPPLRYLAELRMQRA 243 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 A++ + + +A VGY SE +F +AF R G PG +R R R Sbjct: 244 AELLAEGDGSLAAVAAEVGYDSEFAFSRAFKRHTGEAPGAFRRRSR 289 >UniRef50_A9CLM3 Transcriptional regulator, AraC family n=2 Tax=Agrobacterium tumefaciens RepID=A9CLM3_AGRT5 Length = 254 Score = 166 bits (421), Expect = 7e-40, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 5/197 (2%) Query: 78 SHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSA 137 + + + + T+ SA + +LP+ L L+ N LR + E A Sbjct: 58 ASLPDGAAICAGATVDFGGSANPLVGALPDELCLSLANE----PELRGLCQLMVAEVEVA 113 Query: 138 MPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G + +++C LA+R+ IA + +L+ L HP L + + + P W + Sbjct: 114 RCGGGTIEARLCEIIVVLAIRKAIAIGTVDAGLLAGLAHPGLHPSLVAIHDNPARNWRIA 173 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA+IA MSR F F +P+A L RL + V +A VG+ S Sbjct: 174 DLAAIADMSRGQFISTFTQTVAQSPIAYLNGWRLALGRAELRAGR-SVKSVATGVGFGSA 232 Query: 258 SSFHKAFVREFGCTPGE 274 ++F +A+ R+FG P + Sbjct: 233 AAFSRAYSRKFGSPPAQ 249 >UniRef50_C5D1X9 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5D1X9_VARPS Length = 259 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 36/274 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ + + + + G+ L G E T Sbjct: 10 MDRLAAFVEVFKLRVAVLAPGEPGTPALLLAGP------------------EDGTAGRVI 51 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 RPG LP ++ + ++ + A ++++PE + + Sbjct: 52 FRPGGFSELPPDAR-------------IAASVDFDNEANPLMSAMPEEVSVPLDGS---- 94 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L+ E+ + G A +++ +A+R I + + + L HP L Sbjct: 95 PSLQATAAAFMAEAAGSRCGRSAALNRLAEVLVLMALRSAIDAGTQKPGLFAALAHPSLH 154 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + +MP WTV+ LAS + MSR++F FR + GTTP+A L RL +A + Sbjct: 155 RAVVSIHDMPSRQWTVDDLASRSAMSRSTFMSTFRTIVGTTPMAYLGAWRLTLARRYLMA 214 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 PV + A G+ S +F +AF + +G P Sbjct: 215 GD-PVKLAARRTGFGSAEAFSRAFSKAYGHAPAA 247 >UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SGH8_9FIRM Length = 288 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 111/263 (42%), Gaps = 14/263 (5%) Query: 21 CVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHR-LSH 79 G DW + + + +G L G++F ++P ++V++ H LS Sbjct: 26 SRFGGDWNSTTHTHSCTELFYCLSGEGQFYL---AGQLFPVKPDDMVIVNPQVEHTELSL 82 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 + IV G ++ FL S +T + A N + + L E+ ++ Sbjct: 83 NASPLEYIVLGVASME-----FLFSKADTNY-AIFNCRENRERMVTLLHMLLAEADRSLD 136 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLE-MPGHAWTVES 198 G + +C + VR + E+ + R A I++ L+ +++ Sbjct: 137 GCETVCQDLLEVLLIWLVRCTTISLQLEE---AAPTENRECAEIKRYLDTNYREDISLDL 193 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA +AH+++ A F+ G +P+ L + R++ + M + I+E +G++S S Sbjct: 194 LAELAHLNKYYLAHTFQREYGISPITYLNRRRIEESKHMLGNTGYSLAQISELMGFSSPS 253 Query: 259 SFHKAFVREFGCTPGEYRERVRQ 281 F + F + G TP EYR + RQ Sbjct: 254 YFSQCFRKAEGMTPNEYRRQTRQ 276 >UniRef50_A5V7K5 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V7K5_SPHWW Length = 369 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 104/320 (32%), Gaps = 48/320 (15%) Query: 3 ALSRLLMLNAPQGTIDKNCVLG-SDWQLPHGAGELSVIRWHALTQGAAKL-EMPTGEIFT 60 L + L G + +G W + + + + +G + Sbjct: 41 PLIQALRSVRVAGVLASTVAIGSGSWSASIPVPDECALLY-VVARGRCVGGTFDPATMVD 99 Query: 61 LRPGNVVLLPQNSAHRLSH----------------------------------------- 79 L G+++L P + LS Sbjct: 100 LSAGDILLFPHPGRYILSERRGIAPVPLEDMLEEVLGGIEGVEGRWKSLFSSPFTIAGAK 159 Query: 80 VDNESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 + I L H L LP + L P + ++ + + + + Sbjct: 160 AGDPVVAITALRLFFDHGLPAVLLRGLPPFVHL-PGFATRHGPFVEAILRQVIGQGEEGL 218 Query: 139 PGVDALCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G A +++ + ++A + L P + I + P WT+ Sbjct: 219 SGQGA-ATRLAEALLVKCLSAFLADFADKRPGFGRGLRDPFIAKAIGAIQSRPNLNWTLA 277 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 +++ A +SR++F FR TP LT +R+ A M + + IAE +GY SE Sbjct: 278 AMSRSAGLSRSAFTDRFRAAMEMTPTEFLTAVRMARATDMLENGKMSIAQIAEMIGYGSE 337 Query: 258 SSFHKAFVREFGCTPGEYRE 277 ++F++AF R G PG R Sbjct: 338 AAFNRAFRRWNGSPPGALRR 357 >UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ70_CALS8 Length = 286 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 15/274 (5%) Query: 13 PQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQN 72 P +K V ++ LPH E ++ L +G A + E F L P + + Sbjct: 19 PINVYEKIFVHENNTLLPHWHDEFEIV---YLEKGTASFRVDGKEYF-LGPKQFLFVNCG 74 Query: 73 SAHRLSHVDNESTCIVCGTLRLQHSARY------FLTSLPETLFLAPVNHSVEYNWLREA 126 S H DN + +L + S +L S+ E L V +S E RE Sbjct: 75 SIHGGKAEDNPEPYAIVFSLSMLFSEGPDICKSKYLQSVSERKLL--VQNSFEDEHTREL 132 Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAV-REWIAQVNTEKNILSLLLHPRLGAVIQQ 185 I + + G + L F + ++ +T++ + L ++ + + Sbjct: 133 ISNIITVWKEKPKGYELLVKGYLFVIFYYLFNKRYVTASSTDREL--DLKLEKIKSALDF 190 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 + ++ LA +A++S+ F +LF++++ TP+ + K R++ A ++ L + Sbjct: 191 INSNYSSDIDIDLLAKLANLSKFYFCRLFKEITHLTPVDYINKFRVEKAIELIKNTNLSI 250 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 IA VG+ + S F K F G TP +Y++ V Sbjct: 251 SEIAFEVGFNNVSYFIKVFKEYVGVTPFKYKKNV 284 >UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3B4_PAESJ Length = 300 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 13/251 (5%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCG 90 HG + +I +T G + E + G++V+ S+ + T + Sbjct: 62 HGRVDFQLI---YITGGKGRFRFHN-ETIEVPSGSLVVYTPGQPQHYSYQAEDGTEVYWI 117 Query: 91 TLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP-GVDALCSQIC 149 +SA +L L PV+ + + + QE S P G + + + Sbjct: 118 HFT-GYSAYDYLQQF--GLLTQPVHTVGIIDDVTALFKKIIQELNSHRPLGSHMVNAYLL 174 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 L R A+ + HP + +I + E + ++ LA +S Sbjct: 175 EMLTLLGRRLQTAEEPGAQG-----RHPDINQMIAFIHEKYSESLSISDLAGECSLSVFR 229 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F F++V+G TP+ +T++R+ A ++ S +L V +A VGY + F + F G Sbjct: 230 FIHKFKEVTGMTPMKYITEIRINEAKKLLSESSLHVKEVAAVVGYDNPLYFSRIFRSTVG 289 Query: 270 CTPGEYRERVR 280 P EY+++ + Sbjct: 290 IPPSEYKKQFQ 300 >UniRef50_Q1GEZ9 Transcriptional regulator, AraC family n=10 Tax=Alphaproteobacteria RepID=Q1GEZ9_SILST Length = 243 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 5/183 (2%) Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + + +LP+ + + E L + L+QE + G ++ S + Sbjct: 62 DGAHNPLVAALPQRVEV----DLAEAPALASVLALLRQEREAHRCGAQSVVSSLGQVLMV 117 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R I +L+ L PRL I M + PG +WT LA A +S + F++LF Sbjct: 118 RLLRHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTSDLAQEAGLSLSRFSELF 177 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 TP+ L + RL +A Q R V +A Y S F +AF + +G P Sbjct: 178 SAQMNETPMGYLRRWRLTLARQDLIRGDR-VEAVARRYAYDSPEGFARAFRKFYGVAPVS 236 Query: 275 YRE 277 R+ Sbjct: 237 LRQ 239 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 22/264 (8%) Query: 34 GELSVIRWHA--------LTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNEST 85 + + R+H L G + I+ L PG+ VL+PQ++ HR + N + Sbjct: 22 ADFHMDRFHYHPYYEIYFLLSGNCS-ALINHSIYHLVPGDFVLIPQSAMHRFVYDCNSTV 80 Query: 86 CIVCGTLRLQHSARYFLTS---LPETLFLAPVNH--SVEYNWLREAIPFLQQESRSAMPG 140 + +A F + + E LF PV H S+ L QE+ Sbjct: 81 KRYNLFFTMDFAASLFHSDTKDILEHLFHYPVLHLTSLLQGNATRLFDTLYQETVGQDSC 140 Query: 141 VDALCSQICATFFTLAVR--EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 A+ + +L VR + I + + + A + + ++ Sbjct: 141 SQAVIPAYISLILSLLVRNRDHIQLQDLDS------AENAIQASARYISTHFQEPVSLHM 194 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 +A HMS +++ F+ ++G LTK RL A ++ + +L V IA G+ + Sbjct: 195 VADYVHMSPTYYSKKFKQITGVGFKEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGN 254 Query: 259 SFHKAFVREFGCTPGEYRERVRQL 282 F AF +EFG +P +YR+R + L Sbjct: 255 YFGDAFRKEFGLSPLQYRKRQKNL 278 >UniRef50_A8TQH1 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQH1_9PROT Length = 255 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 7/197 (3%) Query: 84 STCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T ++ A + +LP + L+ + + I L E+++A G Sbjct: 57 ETILIEARASWGGDANPLVAALPTCMSLSIGDDT------APLIGLLLAEAQAARCGSGV 110 Query: 144 LCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 + S++ +R I + T ++S L PRL I M E PG W LA+IA Sbjct: 111 VLSRLAEVLVIRLLRAEIERGATGSGLVSGLADPRLSRAIVAMHEAPGRPWANVGLAAIA 170 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MS + F + FR G TP A L + R+ +A Q R V +A GYAS + +A Sbjct: 171 GMSLSRFTEAFRTRVGETPQAYLRRWRMTLARQDLDRG-HRVQSVARRYGYASSEALARA 229 Query: 264 FVREFGCTPGEYRERVR 280 F R++G P R + Sbjct: 230 FQRQYGVNPMAVRHNPQ 246 >UniRef50_UPI000178921D transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178921D Length = 318 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 113/296 (38%), Gaps = 26/296 (8%) Query: 8 LMLNAPQGTIDKNCVLGSDWQLPHGAGELSVI-------RWHALT-----QGAAKLEMPT 55 + +N PQ + + P A I WH QG + Sbjct: 19 IEVNRPQSVVPDAIDFSNA-AFPFTASTTHGIFAGAQRLHWHHALELNYIQGGTGFILIN 77 Query: 56 GEIFTLRPGNVVLLPQNSAHRLSHVDN-------ESTCIVCGTLRLQHSARYFLTSLPET 108 G R G+++ + N HR +N ++ L+ SL Sbjct: 78 GMKLPFRQGDIIFINSNDLHRAYETENLVMDVIMFEPSLLSIDLKFDPDLMAPFRSLGNV 137 Query: 109 LFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK 168 S ++ L + + +E ++ +L F +LA R + + Sbjct: 138 -----DRQSPVHDELARLLRRMMEEYKARGTSYMSLIRSDLIRFLSLANRHLSSPAQEHR 192 Query: 169 NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTK 228 I +H L V++ M + WT++ L+ + H+S + F+ LF+ GT+P L + Sbjct: 193 PIKGRGMH-ALKEVLRTMELHLDYGWTLQELSDLTHLSPSRFSALFQQAVGTSPHHYLIQ 251 Query: 229 LRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 LRL A + ++ IAE+ G+ + S+F++ F + G +P E RER +P Sbjct: 252 LRLTHAVHLLETTDQKIIEIAETCGFRNLSNFNRLFKQHVGASPSEIRERAYAGSP 307 >UniRef50_UPI0001788F57 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F57 Length = 292 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 103/261 (39%), Gaps = 15/261 (5%) Query: 33 AGELSVIRWHALTQ-----GAAKLEMPTGEIFTLRPGNVVLLPQNSAHR-LSHVDNESTC 86 + WH + + + G+ F + G+V+L+ N H D T Sbjct: 32 TSPYQKLHWHNVLEINYIKSGMGYYIINGQKFEFQQGDVLLINSNDLHCAYETKDLVMTV 91 Query: 87 IVCGTLRLQHSAR-------YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 I + H+ R F + L P +H LR + LQ+E Sbjct: 92 ISFDSTWFIHNLRFDPELFSPFREMGKHYMNLIPRDHPA-MGKLRSLLFELQEEHVGEQR 150 Query: 140 GVDALCSQICATFFTLAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 + + F R+ I + +S ++ VI M + H WT+E Sbjct: 151 SYATVVYSLLLQFLATVNRQCRIEGEGGSEPSISERQLEKMRQVIMVMEQNFAHPWTLEE 210 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LAS+ ++S + F+++F+ G PL L +RL+ A M + V+ +A G+ + + Sbjct: 211 LASLVYLSPSRFSEIFKRAVGMPPLLYLIHIRLEQAVTMLEGGHMKVMDVALECGFRTLT 270 Query: 259 SFHKAFVREFGCTPGEYRERV 279 +F++ F + G TP +++ Sbjct: 271 NFNRLFKKHIGMTPKASQKQH 291 >UniRef50_A9KRM0 Transcriptional regulator, AraC family n=3 Tax=Firmicutes RepID=A9KRM0_CLOPH Length = 296 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 14/229 (6%) Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLF-------L 111 L G+++LLP H+L + + I+ + +S Y LT + Sbjct: 58 HELEVGDIILLPSGELHQL-YAPTKGKRII---FQFDYSLLYNLTGFDSVFHMFHPCTLI 113 Query: 112 APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNIL 171 ++ L + + E P +A + FF + R +I N Sbjct: 114 TNETMPDIHDNLHSLMLRIMDEYFGDSPLKEAAIYSMLVNFFVILGRNYITSEKKFPNTK 173 Query: 172 SLLLHPRLGAVI---QQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTK 228 S H + + + E V+ LA +A S+ F +LF++ SG + L K Sbjct: 174 SPKRHEYIDKFLMVCTHINEHCTEPINVDDLAQLAGFSKYHFMRLFKEFSGISYYDYLNK 233 Query: 229 LRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 R+ A ++ L + IA G+ S ++F++ F + CTP EY+ Sbjct: 234 QRIMHAEKLLIDPNLTITEIAMHSGFNSLATFNRIFKEQKQCTPSEYKR 282 >UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Ruminococcaceae RepID=C7H5Z6_9FIRM Length = 319 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 14/263 (5%) Query: 21 CVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHR-LSH 79 G DW + + + +G L +G++F ++P ++V++ H LS Sbjct: 57 SRFGGDWNSTVHTHSCTELFYCLSGEGQFLL---SGQLFPVKPDDMVIVNPQVEHTELSL 113 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 + IV G S L ++ + A N + + L E+ ++ Sbjct: 114 NASPLEYIVLGV-----SGIEILFGKADSTY-AIFNCRENRERMVTLLHMLLAEADRSLD 167 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEM-PGHAWTVES 198 G + +C + VR + E++ S R I++ L+ ++++ Sbjct: 168 GCETVCQDLLEVLLIWLVRCTTLSLQVEESPRS---DNRECVEIKRYLDNNYREEISLDT 224 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA +AH+++ A F+ G +P+ L + R++ + M + I+E +G++S S Sbjct: 225 LAEVAHINKYYLAHTFQKAYGISPITYLNRRRIEESKYMLGNTGYSLAQISELMGFSSPS 284 Query: 259 SFHKAFVREFGCTPGEYRERVRQ 281 F + F + G TP EYR +VRQ Sbjct: 285 YFSQCFRKAEGLTPNEYRRQVRQ 307 >UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF5_PAESJ Length = 294 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 102/280 (36%), Gaps = 18/280 (6%) Query: 13 PQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQN 72 P + C + H EL ++ +T+G A + + + L+ G + + Sbjct: 18 PVSLYEITCPSDAPLLDLHWHDELELL---LVTEGTAVFRVDLQD-YELQAGEAIFVNSG 73 Query: 73 SAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPV------------NHSVEY 120 H V + + + L + +++PV Sbjct: 74 ELHSGYVVGGKPCSFDAVVFHSSLFSSGSIDYLFDR-YISPVLEKRYEVPAHLRREPGPG 132 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L + + + R+ + + + V V + RL Sbjct: 133 MELLAMLDQIFEVHRNEQAASELTIKGLLFSILAKLVSLGKPSVRVKPE-QEGYRIERLK 191 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 VI+ + + ++ LA +A MS + F + F+ ++ +P+ + R+Q AA + Sbjct: 192 TVIEYIEQNYAEPIPLQKLAELARMSESYFCRFFKRITTKSPIEYMNSYRVQQAASRLRQ 251 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 ++ +A VG+ S S F+ F + FGCTP EYR R++ Sbjct: 252 TDAKIMEVALDVGFNSLSYFNTVFRQRFGCTPREYRSRLQ 291 >UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIW0_CLOPH Length = 300 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 33/280 (11%) Query: 11 NAPQGTIDKNCVLGSDW-QLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLL 69 G+DW LPH + + +T G+ + + EI ++ ++++L Sbjct: 40 VHVTLLYVAISKYGTDWKSLPHSH---NFAEFFYITNGSGQFSVE-KEILDVKANDLIIL 95 Query: 70 PQNSAHR-LSHVDNESTCIVCGT----LRLQHSARYFLTSLPETLFLAPVNHSVEYNWLR 124 H +S+ IV G + + L S S + L Sbjct: 96 NPTIVHTEISNPSKPMEYIVLGIEGIKFQAEDQGYILLNS------------SAHKSDLH 143 Query: 125 EAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA--- 181 L E +S P + +C + FT+ +R +++ P+L Sbjct: 144 LYFNSLAHEMKSEQPYRNFVCQNLLNIIFTMILRNDAFKISIVSG-------PKLTRECN 196 Query: 182 -VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + E T+E+L+S+ H+++ F F+ GT+P+ L K R++ + + Sbjct: 197 IAKKYIEENYQENITIETLSSLVHLNKYYFVHNFKKQFGTSPINYLIKRRIEESMHLLVS 256 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + I++ VG++S S F +AF R TP EY++ + Sbjct: 257 TNHSLSSISQIVGFSSPSYFSQAFKRMTNITPQEYKKMYK 296 >UniRef50_B4B1U3 Transcriptional regulator, AraC family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B1U3_9CHRO Length = 298 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 68/149 (45%) Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEM 189 L + + PG + T +R + + RL V + E Sbjct: 150 LYADLKLQRPGGRLYAEHLANTLAVHLLRSYCSNNRQSIGCWDCFSSKRLKPVFDYIHEF 209 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 ++ +L+SIA+MS+ F++ F++++G TP + + R++ A Q+ + + + +A Sbjct: 210 LSQDISLSTLSSIANMSQYHFSRTFKEMTGLTPHQYVIRQRVERAKQLLLQSKMSINDVA 269 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYRER 278 + G+ +S H+ F R G TP +RE+ Sbjct: 270 IACGFTHQSHLHRHFKRLIGVTPSAFREK 298 >UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IVW5_METNO Length = 320 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 30/283 (10%) Query: 26 DWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLS------- 78 G + H G ++ + G +L P +++ P N+ + Sbjct: 34 PSGYRAEMGTIDAPAIHYTISGRGRISIGNGPSMSLEPHLLIIKPPNTPFAIEVDGASGP 93 Query: 79 --------------------HVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 + +CG L L V Sbjct: 94 KRLISRDCWKRHDGVLRIGMPTEQPEVIQICGFFNASFGQS---VGLFRELHEPVVEKFE 150 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 + + + +E + G+ A+ + + VR + + + S+L + Sbjct: 151 PTDKIDLKLREAIEELCAQEIGMGAMTASLLKQVIVALVRRSMKSSRSWTDRFSILADRQ 210 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 + M+ PG A TV SLA A +SR++F F ++ G +P+ +L LR++ AA Sbjct: 211 ITRAFADMVARPGAAHTVRSLAHSAGLSRSAFMARFSEIFGRSPMGILRDLRMRQAALDL 270 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + + PV V+A + GY S SSF +AF + + P EYR+RV+ Sbjct: 271 TTTSAPVDVVAYNAGYESRSSFVRAFRKAYNVDPSEYRQRVKN 313 >UniRef50_B0AA61 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AA61_9CLOT Length = 300 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 113/262 (43%), Gaps = 18/262 (6%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCG 90 H E+ VIR + G+ L + + F L G+ V + N H + +E CI+ Sbjct: 45 HWHEEIEVIR---VKSGSIHLYLDNSD-FVLNEGDGVFINSNILHYIRAGTSEE-CILNS 99 Query: 91 TLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLR------------EAIPFLQQESRSAM 138 + ++ + S+ E F+ P+ + + + I + + Sbjct: 100 LVFNKNLISGGVQSVFEQNFVNPIVENKNLSGIAFYKNTSWGEEASACIKNAFSQFEKSE 159 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G + L + + + + ++ I +N KN + L R+ ++ + + T+ Sbjct: 160 FGYEILVREYLSHIWYIMLKN-IQDLNLNKNNRNDLNSERIKNILSFVHKNYNKQITLND 218 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 +A + ++S + F++ G +P+ + K R+ IA +M P+ +I+++VG+ S S Sbjct: 219 IAKVVNLSERECLRCFKNTLGISPIQYILKYRVSIATKMLRENKDPITIISDAVGFDSPS 278 Query: 259 SFHKAFVREFGCTPGEYRERVR 280 F K F R G TP +YR + + Sbjct: 279 YFSKIFKRFIGITPTQYRNKSK 300 >UniRef50_A6E386 Transcriptional regulator, AraC family protein n=2 Tax=Roseovarius RepID=A6E386_9RHOB Length = 304 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 75/297 (25%), Positives = 112/297 (37%), Gaps = 30/297 (10%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPG 64 R+L Q C L L G G + H + G L + L PG Sbjct: 8 DRILSELDIQPEPFALCALEGVCSL--GLGRVPGATLHYVLSGEGYLSLQGHAPILLAPG 65 Query: 65 NVVLLPQNSAHRLSHVDNEST-------------------------CIVCGTLRLQHSAR 99 +VL+P + H LSH +T ++C L L Sbjct: 66 RLVLVPSCARHSLSHTGAGATMVPECRPAGLDLEEHVARGEGEGTMVVLCARLHLGLRGT 125 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 + L + + A+ L E G A+ + +R Sbjct: 126 H---GLIDLMRAPLSLDLTTTPGAARAMETLLGEVMQHRTGGRAMVRVLLLQCVIEMLRG 182 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 + + L L P L + ML+ PG +ESLA A MSR+ FA+ F+ G Sbjct: 183 RLEAGDPGVMWLGALADPGLWRALCAMLDDPGAPHALESLAEAAGMSRSRFAERFQAAYG 242 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 P+ L LRL AAQ+ + +PV +A+ VG+AS S+F +AFV +G +P +R Sbjct: 243 QGPMGFLRALRLARAAQLLVDQRVPVKRVAQMVGFASRSAFSRAFVEAWGQSPRAFR 299 >UniRef50_UPI00019094D0 probable transcriptional regulator protein, AraC family n=1 Tax=Rhizobium etli IE4771 RepID=UPI00019094D0 Length = 331 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 102/267 (38%), Gaps = 35/267 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ L P K W++ E + + +G+++L + TL Sbjct: 3 DPLADIVSLLQPAARYSKLVSGAGTWRV--ERQETGQPFYCVVLEGSSRLGAEDKQ-ITL 59 Query: 62 RPGNVVLLPQNSAHRLSHVDN--------------------------ESTCIVCGTLRLQ 95 R G+ +L+P A +S +D+ + ++ G Sbjct: 60 REGDFILIPAAHAFTMSSLDDGLSPGIDPLTVTMLPEETRHGDPEGAPNARLLVGHFAFG 119 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 L SL + + + L + + E+R+ PG + + +++ Sbjct: 120 SPDAALLVSLLPRIIHIRGD-----SRLSAIVQLVTDEARAERPGKNMILARLLEVLLVE 174 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 A+R A IL L PRL I+++ E P WTV+ LA A +SR++F FR Sbjct: 175 ALRAN-AGEKAPPGILRGLGDPRLAVAIRRLHENPSKEWTVQQLAGEAALSRSAFFNRFR 233 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRET 242 G P+ L R+ +A + +E Sbjct: 234 RAVGLAPMEYLVSWRMALARNLLRQED 260 >UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FUL3_9FIRM Length = 277 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 12/260 (4%) Query: 24 GSDWQLPHGAGELSVIRWHALTQGAA-KLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN 82 W +G +H + G LE E L PG L+P N+ D Sbjct: 27 CDPWH-HYGPTLTHNYLFHYILSGRGSFLENERHEAIQLGPGQGFLMPPNTV-CSYTADQ 84 Query: 83 ESTCIVCGTLRLQHSARYFLT--SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 + C A F+ L + + + + +++ + + + Sbjct: 85 DDPWTYCWIEFNGLKAANFMRQAGLNANNLIFTPHKPMIISSIKDTLETIIRNHSQHE-- 142 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 L +Q+ +R N + + I + + +V+ LA Sbjct: 143 -SFLIAQLY-LLVDHLIRFSKHSPQQRPNEIHSF---YIREAIHYIQDHYMDNPSVDQLA 197 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 I H++R F +LF+ TP + R+ + ++ + + IA+ +GY+++ +F Sbjct: 198 DICHLNRNYFTRLFKQELHMTPSQFILTYRINQSCELLASTNRSIRDIADQIGYSNQFNF 257 Query: 261 HKAFVREFGCTPGEYRERVR 280 AF R G TP E+R R R Sbjct: 258 SSAFKRVKGMTPMEWRRRYR 277 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 12/265 (4%) Query: 17 IDKNCVLGSDWQLP-HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAH 75 + +P H EL +I + G + + PG+++L+ H Sbjct: 21 YYHVTESHPQYAMPYHWHEELELIH---IISGTFHVTI-NETTRNAVPGDILLVNSGGLH 76 Query: 76 RLSHVDNESTCIVC--GTLRLQHSARYFLTSLPET-LFLAPVNHSVEYNWLREAIPFLQQ 132 + D C+V L Q A FL L L L + + + + L Sbjct: 77 GGTPYDCVYECLVFPVSLLSSQTYASEFLNRLDRQDLILDEYFPAGDDTAIHSLLERLFA 136 Query: 133 ESRSAMPGVDALCSQICATFFTLAV--REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMP 190 + + G C + F L + R + A ++ + + L V+ + Sbjct: 137 LMQDSDEGGKLQCLGLLYQFMGLLLQDRRYTASDKSDLSTHRNIY--LLKNVLNYIEAHY 194 Query: 191 GHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAE 250 T+ LA A MS F F +++G TP+ + R++ A + + + IA Sbjct: 195 TEKITLHELARTAGMSSKYFCHFFSEMTGRTPIDYVNYYRVERACCLLAGIGHSITDIAM 254 Query: 251 SVGYASESSFHKAFVREFGCTPGEY 275 G+ S F +AF + G +PG+Y Sbjct: 255 LCGFNDVSYFTRAFKKYKGISPGQY 279 >UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SBA6_9FIRM Length = 286 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 98/265 (36%), Gaps = 12/265 (4%) Query: 20 NCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSH 79 C G W G G H + G E+ G + + G++ + + + Sbjct: 28 RCAPGQTW----GPGIRDHYLIHLVVSGKGIFEV-GGRTWEVSEGDLFF--ARPSQLIRY 80 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 +E + + + L + APV+H+ + + +R A+ + SR P Sbjct: 81 TADEQQPWEYSWVGFNGACAHKLAAQLPFTDDAPVHHTSDPDGMRAALTNIYS-SRGLQP 139 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 +A F +RE A + + I+ + H +++ + Sbjct: 140 QDEAAMVGYLYLFIAALMRETSAGKPHT----ASSSSQYVLNAIKYIQFNYSHDISIDDV 195 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A +SR+ ++F G +P+ LT+ R+ A ++ L + +A SVG+ + Sbjct: 196 AKSVGVSRSHLYRVFMLNVGKSPIDYLTEYRINEACKLLRAGNLSIAEVAVSVGFFDQFY 255 Query: 260 FHKAFVREFGCTPGEYRERVRQLAP 284 F + F R G P +Y + P Sbjct: 256 FSRVFKRAKGVPPSKYFAAQQDADP 280 >UniRef50_B9TKC7 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKC7_RICCO Length = 369 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 32/269 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LS +L + P + + +W L + +R +A+T+G + + Sbjct: 106 DPLSEILDVLQPSSYMFRAIDARGEWLLQFPGVD--GLRCYAVTRGQIWIHIDGEAHPRE 163 Query: 61 LRPGNVVLLPQNSAHRLSH-----VDNESTCIVCG-------------------TLRLQH 96 +R G ++L A +L D+ + + Sbjct: 164 IRAGGCLVLTCKHAIKLGSSMTRFADDAVGVMTAAPWGGVVNINGGGEVYGLGGFFMFEG 223 Query: 97 SAR-YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A L SLP + L + E L A+ + E R PG L L Sbjct: 224 QAAKQLLRSLPRVMQL---ENLAENAKLSVAMTSIMSELREPKPGGKLLVENTALCMLVL 280 Query: 156 AVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R+ + + + L L ++G + + P WT+ SLAS A MSR++FA F Sbjct: 281 IMRQQLGTGDQAQPGWLQGLGDAKIGRALTALHAAPASPWTLASLASEAGMSRSAFAAHF 340 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETL 243 R+ G + L + R+ +AA + Sbjct: 341 RERMGEPAMGYLQRWRMLLAADQLLHSSD 369 >UniRef50_C0ABA0 L-rhamnose operon transcriptional activator n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ABA0_9BACT Length = 297 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 108/281 (38%), Gaps = 25/281 (8%) Query: 20 NCVLGSDWQLPHGAGELSVIRWH-----ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSA 74 +D H + WH A+ G + + GE F + G+V +L Sbjct: 22 RVATQADGGESHPHDVTEIEHWHDFCELAMVTGGRGVHVLEGESFHVSTGDVFVLQGRQV 81 Query: 75 HRLS------------HVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNW 122 H + + +SA + L + + Sbjct: 82 HCFRERQGLALINVMYDPERLPLPLGLLRRLPGYSALFMLEPTFRSTHRFSSRLRLARRE 141 Query: 123 L---REAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 L + ++ ES++A G +A+ + L R + E + L ++ Sbjct: 142 LGSAEAIVERIENESKAAQEGHEAVLLSLLVELMVLLSRHYAQSDTRESHALL-----QV 196 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 G ++ + + G WT+E LA A +SR++ ++FR +G +P+ L LR++ A ++ Sbjct: 197 GQLVSMLEQRFGEPWTLEQLAEQARVSRSNLLRMFRQATGQSPIDFLIGLRIEAARRLLR 256 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 R L + IA G++ + F + F + G TP YR ++R Sbjct: 257 RSDLGMTEIALECGFSDGNFFPRQFRKTCGVTPSIYRRQMR 297 >UniRef50_B4WW69 Transcriptional regulator, AraC family protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WW69_9SYNE Length = 291 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 14/222 (6%) Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNH----- 116 R G++ + P + D++ + FL + E + Sbjct: 75 RRGDLCITPSGFSSGYRAEDDD-------HYLYVQVSSIFLQRISEEISETGTGKVELLP 127 Query: 117 --SVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLL 174 + + L E + +R + S L Sbjct: 128 NFQTRDPQVESLLGLLHAEVHRNGQMGQLYSESLANALAVSFLRNHASTQPQVAQYESGL 187 Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 +L V + + + + LA + +S++ F++ F+ G TP L + R++ A Sbjct: 188 GDRKLLLVTRYIADALEQDIKLADLAQLVGVSQSHFSRQFKKSMGLTPYQYLLQQRIERA 247 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 Q+ + +V IA G+ S S F + F + G TP YR Sbjct: 248 KQLLKQTQQSLVDIALVCGFDSHSHFSRQFRKATGMTPSAYR 289 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 12/255 (4%) Query: 21 CVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV 80 CV G W G G H + G ++ G TL+ G++ L N +++ Sbjct: 29 CVPGHTW----GPGVRDHYLIHLVVAGKGVYQV-GGVSHTLQEGDLFLAKPNQL--ITYA 81 Query: 81 DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 +E+ + + L L PV+H + +REA+ + SR P Sbjct: 82 ADETDPWEYYWVGFNGACANKLVQQTPFSDLHPVHHCKDPQAVREALYNIYL-SRGPEPQ 140 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 +AL + F ++E + + S + + I+ + H +V+ +A Sbjct: 141 CEALMTGYLYIFMAHLMKEARDAMPNVGSSSS----QYVLSAIKYIQFNYSHDISVDDIA 196 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 +SR+ ++F G +P+ LT R+ A + L + IA SVG+ + F Sbjct: 197 KAVGVSRSHLYRVFMANVGQSPIDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYF 256 Query: 261 HKAFVREFGCTPGEY 275 + F + G P +Y Sbjct: 257 SRVFKKVKGVPPSKY 271 >UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ18_9CLOT Length = 280 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 10/245 (4%) Query: 43 ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL-SHVDNESTCIVCGTLRLQHSARYF 101 ++G +++ GE + +PG+ V++ H L + D + + L + F Sbjct: 38 YCSEGHCTIKV-NGESYDCQPGDFVIIHTMEDHTLIRNSDCKLLGVQMDLSVLDTAFSPF 96 Query: 102 LTSLPETLFLAPVN------HSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 S F+ + + L + + E + PG + F+ Sbjct: 97 YESQYLVPFIRGSGKYQRRIRVPKGSLLESILSEILVEYQKKQPGYEMYIKGDILRLFSC 156 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 VR + ++ L R+ VI M + +V + A IA MS F +LF+ Sbjct: 157 LVRTKVIEIGERNVNFQDL--ERIKPVIDYMEQHIETELSVAAAAKIACMSYYHFCRLFK 214 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V G T + +R++ A ++ + IA G+ S + F++ F +E G P Y Sbjct: 215 KVIGKTFVEYQNFIRIRRAEKLLITTDRTITNIAFETGFGSVAYFNRVFKKETGQAPANY 274 Query: 276 RERVR 280 R+++R Sbjct: 275 RKKMR 279 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 109/269 (40%), Gaps = 11/269 (4%) Query: 9 MLNAPQGTIDKNCVLGSDW-QLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVV 67 L P+ +W + H ++ + GA + + G+ F L PG++V Sbjct: 15 SLVQPELIYTGLLEDAPNWFNIQHSHDFCEIL---YVAGGAGEAILE-GKKFRLAPGDLV 70 Query: 68 LLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAI 127 ++ + H ++ +R + ++ + + Sbjct: 71 VVNPGTLHEERSDAKAPLRLIFLAIR-DFAVPGLPAGCLSQEKYRVLSCGEYRYKMDIYL 129 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQML 187 L QE+ S + + + + L +R + ++N E ++ + + Sbjct: 130 RELLQETSSQIEFYQEISQGLVSALLVLVMR--LIRINPEDEAALSQECQKIK---EYLD 184 Query: 188 EMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 + T++SL+ ++S+ + LF++ +G +P+ LT R++ A ++ S LPV Sbjct: 185 QNFTSPITLDSLSETVYISKHYLSHLFKEQTGVSPIKYLTSKRMEKACELLSETELPVSE 244 Query: 248 IAESVGYASESSFHKAFVREFGCTPGEYR 276 ++++VGY + F + F R +G +P +YR Sbjct: 245 VSKAVGYENPLYFSQVFKRIYGISPVKYR 273 >UniRef50_B2TM72 AraC-family transcriptional regulator n=3 Tax=Clostridium botulinum RepID=B2TM72_CLOBB Length = 291 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 114/274 (41%), Gaps = 21/274 (7%) Query: 25 SDWQLPHGAGELSVI-RWH------ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL 77 + + G E S+I WH + G L++ T + +T + G+++L+ S H Sbjct: 20 GIYNVSLGNIEKSIIAHWHNEIELILVLSGEFNLKINT-DSYTCKDGDIILINSGSLHYF 78 Query: 78 SHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPV------------NHSVEYNWLRE 125 S +NES+ + L + F+ P+ S+ N L+ Sbjct: 79 STKENESSTWNSIVFNMDQLNSNILDNC-SVNFITPIINNEFKLPVIIHKDSLINNELKC 137 Query: 126 AIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQ 185 I + S G + + +F+L + + + T L+ ++ V++ Sbjct: 138 IILNIIDTYNSKYYGFELEIKSLIFKYFSLLFKFNLVKKKTNNTCLNEEKIEKIKIVLEY 197 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 + E + L++I H +++ F + F+ +G T + + RL+ AA + S L + Sbjct: 198 IQENYNKEIDINRLSAICHYNQSHFMRFFKKHTGKTCIQFIKNYRLEKAASLISNTDLSI 257 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 I+ VG+ + S F ++F ++ TP ++ R+ Sbjct: 258 TEISLEVGFTNISYFIRSFKEKYNTTPKGFKTRL 291 >UniRef50_C9L8Z4 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9L8Z4_RUMHA Length = 266 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 104/264 (39%), Gaps = 16/264 (6%) Query: 23 LGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSA---HRLSH 79 G +W +P S++R+ +T G A + E T+ VV +P+ H L Sbjct: 6 FGGEWYMPESKIPYSMLRY--ITAGKAIFIIDGKE-ITVEKNQVVYIPRGCELSCHALGS 62 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY-NWLREAIPFLQQESRSAM 138 + + ++ FL E + EY + +AI E + Sbjct: 63 TFSFMSIRFNTSVYYDGG--DFLKDYYEMPDVLEDRGEKEYFEKIYDAIHLEGAERMFLV 120 Query: 139 PGV-DALCSQICATF---FTLAVRE-WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHA 193 G + L +I RE W + + + + R+ +V+ M+ P Sbjct: 121 RGYLELLIGKIIERVGKDNAHLKREVWRKENSLNSG--TERMDERIRSVVDFMVLHPTET 178 Query: 194 WTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVG 253 +T L +A + F +LF++ +G +P L +R+ +A + V IA SVG Sbjct: 179 YTTARLCEMAGLGETRFRKLFKEQTGKSPGEYLRDMRMTVAGRRLLLSAESVSDIAYSVG 238 Query: 254 YASESSFHKAFVREFGCTPGEYRE 277 Y + F + F + FG TP +YR+ Sbjct: 239 YEDVNFFIRVFKKYFGVTPNQYRK 262 >UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C32 Length = 297 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 19/270 (7%) Query: 27 WQLPHGAGELSVIRWH------ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV 80 + + E+ + WH +G A + E PG+++ + + H Sbjct: 23 FHIIPPGKEVLHLHWHDDLELIYFIRGNATFYI-GSETVKPEPGDLMFVNKGMIHTGFAD 81 Query: 81 DNESTC---IVCGTLRLQH--------SARYFLTSLPETLFLAPVNHSVEYNWLREAIPF 129 D +V ++ + S + + + + Sbjct: 82 DEHQVEYYALVFHSVLAESRVAGSSHVQITNPYASGKRFFPILLPVTDAYNSLIAGIVKQ 141 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLE 188 + E G + R + + + L R +I + Sbjct: 142 MIAEYEQQAIGYQVAIQSMLHLLLVHLSRHHHLHGPTGSADTVGAELTDRFKELIAFVER 201 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 TV+ A I ++S F + F+ V+G T + + LR+ A Q+ + P+ I Sbjct: 202 HYPEKLTVQQAAGIVNLSEYHFCRTFKKVTGKTFVEYVNLLRINAAEQLLIHSSDPITEI 261 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRER 278 A VG+ S + F + F + +P + R+R Sbjct: 262 AFKVGFGSVNYFSQMFRQYKRHSPSQCRKR 291 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77379 Uncharacterized HTH-type transcriptional regulat... 296 7e-79 UniRef50_A0NP67 Phosphoribosylaminoimidazole carboxylase, ATPase... 268 2e-70 UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C... 259 8e-68 UniRef50_C5CL63 Transcriptional regulator, AraC family n=1 Tax=V... 257 3e-67 UniRef50_A9DAF9 Transcriptional regulator, AraC family protein n... 257 3e-67 UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=B... 256 8e-67 UniRef50_A6GC16 Phosphoribosylaminoimidazole carboxylase, ATPase... 255 1e-66 UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacter... 255 1e-66 UniRef50_P45008 Uncharacterized HTH-type transcriptional regulat... 255 1e-66 UniRef50_C5BRT4 Helix-turn-helix-domain containing protein, AraC... 255 2e-66 UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=C... 254 2e-66 UniRef50_B5ZZ22 Transcriptional regulator, AraC family n=5 Tax=R... 254 3e-66 UniRef50_Q7MC25 AraC-type DNA-binding domain-containing protein ... 253 5e-66 UniRef50_B1KKM5 Transcriptional regulator, AraC family n=1 Tax=S... 253 5e-66 UniRef50_B6A5N0 Transcriptional regulator, AraC family n=1 Tax=R... 252 1e-65 UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n... 252 1e-65 UniRef50_B2TAQ8 Transcriptional regulator, AraC family n=6 Tax=P... 252 1e-65 UniRef50_B3PSX8 Probable transcriptional regulator protein, AraC... 252 2e-65 UniRef50_B6A116 Transcriptional regulator, AraC family n=5 Tax=R... 251 2e-65 UniRef50_A4F0L2 Transcriptional regulator, AraC family protein n... 249 8e-65 UniRef50_C6AQ53 MtrA n=4 Tax=Pasteurellaceae RepID=C6AQ53_AGGAN 249 8e-65 UniRef50_A7NLR2 Transcriptional regulator, AraC family n=2 Tax=C... 249 8e-65 UniRef50_Q2BP83 AraC-type DNA-binding domain-containing protein ... 248 1e-64 UniRef50_A1TZC9 Transcriptional regulator, AraC family n=1 Tax=M... 248 2e-64 UniRef50_A3Y9X7 Transcriptional regulator, araC family protein n... 248 2e-64 UniRef50_B2IIY8 Transcriptional regulator, AraC family n=3 Tax=B... 248 2e-64 UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=C... 248 2e-64 UniRef50_B2HZJ1 AraC-type DNA-binding domain-containing protein ... 246 6e-64 UniRef50_A0L3B8 Transcriptional regulator, AraC family n=2 Tax=G... 246 6e-64 UniRef50_A8M1A6 Transcriptional regulator, AraC family n=1 Tax=S... 246 7e-64 UniRef50_B5WHE2 Transcriptional regulator, AraC family n=1 Tax=B... 246 7e-64 UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=R... 245 9e-64 UniRef50_B5JV28 Transcriptional regulator n=1 Tax=gamma proteoba... 245 1e-63 UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC ... 245 1e-63 UniRef50_D1V7I4 Transcriptional regulator, AraC family n=2 Tax=A... 245 1e-63 UniRef50_B9XHR2 Transcriptional regulator, AraC family n=1 Tax=b... 244 2e-63 UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=C... 241 2e-62 UniRef50_Q09DL8 Transcriptional regulator, AraC family protein n... 241 2e-62 UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=c... 241 2e-62 UniRef50_A9WHL1 Helix-turn-helix-domain containing protein AraC ... 241 3e-62 UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase... 241 3e-62 UniRef50_A7HFH7 Helix-turn-helix-domain containing protein AraC ... 240 3e-62 UniRef50_A7HS46 Helix-turn-helix-domain containing protein AraC ... 240 4e-62 UniRef50_C1RHR4 DNA-binding domain-containing protein, AraC-type... 239 7e-62 UniRef50_D1BRX4 Transcriptional regulator, AraC family n=1 Tax=X... 239 9e-62 UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=C... 238 1e-61 UniRef50_Q01Y24 Transcriptional regulator, AraC family n=2 Tax=A... 238 2e-61 UniRef50_B1M711 Transcriptional regulator, AraC family n=4 Tax=R... 238 2e-61 UniRef50_A6UH43 Helix-turn-helix-domain containing protein AraC ... 237 4e-61 UniRef50_Q0K088 Transcriptional regulator (Transcriptional regul... 237 4e-61 UniRef50_B9JLR2 Transcriptional regulator protein n=2 Tax=Rhizob... 235 1e-60 UniRef50_A7HC12 Helix-turn-helix-domain containing protein AraC ... 235 1e-60 UniRef50_Q21H00 Transcriptional regulator, AraC family n=1 Tax=S... 235 2e-60 UniRef50_B1JWG2 Transcriptional regulator, AraC family n=13 Tax=... 235 2e-60 UniRef50_C6AWA8 Transcriptional regulator, AraC family n=1 Tax=R... 234 3e-60 UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=B... 233 4e-60 UniRef50_O31249 Transcriptional regulator (XylS/AraC family) n=5... 233 6e-60 UniRef50_A8LC22 Transcriptional regulator, AraC family n=3 Tax=A... 233 7e-60 UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein ... 232 8e-60 UniRef50_A2SEH8 Transcriptional regulator, AraC family n=1 Tax=M... 232 8e-60 UniRef50_Q07PU3 Transcriptional regulator, AraC family n=1 Tax=R... 232 8e-60 UniRef50_C1ACW1 AraC family transcriptional regulator n=1 Tax=Ge... 232 8e-60 UniRef50_A9F1M5 Putative araC-like transcription regulator n=1 T... 232 1e-59 UniRef50_Q21EK5 Histidine kinase n=2 Tax=Saccharophagus degradan... 232 1e-59 UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=A... 232 1e-59 UniRef50_P35319 Putative araC-like transcription regulator n=6 T... 232 1e-59 UniRef50_A4JQL6 Transcriptional regulator, AraC family n=6 Tax=B... 231 2e-59 UniRef50_A9AD06 AraC family transcriptional regulator n=5 Tax=Bu... 231 2e-59 UniRef50_C8SUE3 Transcriptional regulator, AraC family n=1 Tax=M... 231 2e-59 UniRef50_B2TGP8 Transcriptional regulator, AraC family n=13 Tax=... 231 2e-59 UniRef50_A6VZ04 Helix-turn-helix-domain containing protein AraC ... 231 3e-59 UniRef50_C1F8R2 Transcriptional regulator, AraC family n=1 Tax=A... 230 4e-59 UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingell... 230 4e-59 UniRef50_Q1MGU4 Putative AraC family transcriptional regulator n... 230 4e-59 UniRef50_Q47YP7 Transcriptional regulator, araC family n=1 Tax=C... 230 4e-59 UniRef50_B7V4F0 Probable transcriptional regulator n=7 Tax=Pseud... 230 4e-59 UniRef50_B9XR23 Transcriptional regulator, AraC family n=2 Tax=V... 230 5e-59 UniRef50_Q485B0 Transcriptional regulator, araC family n=1 Tax=C... 229 7e-59 UniRef50_A0KDP5 Transcriptional regulator, AraC family n=11 Tax=... 229 8e-59 UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=B... 229 8e-59 UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Pr... 229 9e-59 UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=R... 229 1e-58 UniRef50_C6B325 Transcriptional regulator, AraC family n=5 Tax=A... 228 1e-58 UniRef50_UPI0001B53B77 AraC family transcriptional regulator n=1... 228 1e-58 UniRef50_A9GK43 Transcriptional regulator, AraC family n=1 Tax=S... 228 2e-58 UniRef50_C9R1V8 MtrA n=1 Tax=Aggregatibacter actinomycetemcomita... 228 2e-58 UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=P... 228 2e-58 UniRef50_Q15UL8 Transcriptional regulator, AraC family n=1 Tax=P... 228 2e-58 UniRef50_Q88IN9 Transcriptional regulator, AraC family n=4 Tax=P... 228 2e-58 UniRef50_A6VY86 Helix-turn-helix-domain containing protein AraC ... 227 3e-58 UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=K... 227 5e-58 UniRef50_D2PPT2 Transcriptional regulator, AraC family n=2 Tax=A... 227 5e-58 UniRef50_C0DSD5 Putative uncharacterized protein n=1 Tax=Eikenel... 227 5e-58 UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=... 226 7e-58 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 226 8e-58 UniRef50_C6XBB1 Transcriptional regulator, AraC family n=1 Tax=M... 226 8e-58 UniRef50_B4VBF5 Transcriptional regulator n=4 Tax=Actinomycetale... 225 1e-57 UniRef50_Q488F1 Transcriptional regulator, AraC family n=2 Tax=G... 225 1e-57 UniRef50_D2BAU8 AraC family transcriptional regulator n=1 Tax=St... 225 1e-57 UniRef50_D2S4Y3 Transcriptional regulator, AraC family n=2 Tax=A... 225 1e-57 UniRef50_D2PNB5 Transcriptional regulator, AraC family n=1 Tax=K... 225 1e-57 UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=P... 225 2e-57 UniRef50_A8ZMX0 Transcriptional regulator, AraC family n=1 Tax=A... 225 2e-57 UniRef50_UPI0001C310C0 transcriptional regulator, AraC family n=... 224 2e-57 UniRef50_C7Q710 Transcriptional regulator, AraC family n=1 Tax=C... 224 3e-57 UniRef50_A9CGU4 Transcriptional regulator, AraC family n=2 Tax=A... 223 5e-57 UniRef50_C5CZF0 Transcriptional regulator, AraC family n=1 Tax=V... 223 5e-57 UniRef50_Q21T04 Transcriptional regulator, AraC family n=1 Tax=R... 223 5e-57 UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterob... 223 5e-57 UniRef50_B5GM94 Helix-turn-helix domain-containing protein n=1 T... 223 6e-57 UniRef50_C6WLA0 Transcriptional regulator, AraC family n=1 Tax=A... 223 7e-57 UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronoba... 222 8e-57 UniRef50_C5V7T6 Transcriptional regulator, AraC family n=1 Tax=G... 222 1e-56 UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=A... 221 1e-56 UniRef50_B1MI41 Putative transcriptional regulator, AraC family ... 221 1e-56 UniRef50_B1K331 Transcriptional regulator, AraC family n=12 Tax=... 221 2e-56 UniRef50_B1G656 Transcriptional regulator, AraC family n=1 Tax=B... 221 2e-56 UniRef50_A9M194 AraC-family transcriptional regulator n=29 Tax=N... 221 3e-56 UniRef50_C0XNW0 AraC family transcriptional regulator n=1 Tax=Co... 220 6e-56 UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Pr... 220 7e-56 UniRef50_A4Z2A2 Putative transcriptional regulator, AraC/XylS fa... 219 9e-56 UniRef50_A7JV94 Possible AraC family transcriptional regulator n... 219 9e-56 UniRef50_Q392E1 Transcriptional regulator, AraC family n=32 Tax=... 219 1e-55 UniRef50_C8PYQ8 Transcriptional regulator, AraC family n=1 Tax=E... 219 1e-55 UniRef50_UPI0001AEBE6B AraC family transcriptional regulator n=1... 218 2e-55 UniRef50_B1KNX2 Transcriptional regulator, AraC family n=1 Tax=S... 218 2e-55 UniRef50_A8L3A5 Transcriptional regulator, AraC family n=1 Tax=F... 217 3e-55 UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=D... 217 3e-55 UniRef50_B0U5T8 Transcriptional regulator AraC family n=12 Tax=P... 217 3e-55 UniRef50_B8CRW0 Transcriptional regulator, AraC family n=1 Tax=S... 216 6e-55 UniRef50_Q2KWV1 AraC-family transcriptional regulator n=1 Tax=Bo... 216 6e-55 UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-typ... 216 9e-55 UniRef50_C7PXM7 Transcriptional regulator, AraC family n=1 Tax=C... 215 1e-54 UniRef50_B8ESK8 Transcriptional regulator, AraC family n=8 Tax=P... 215 1e-54 UniRef50_D0XYL8 Transcriptional regulator, AraC family n=1 Tax=C... 215 2e-54 UniRef50_Q2SGY3 AraC-type DNA-binding domain-containing protein ... 214 2e-54 UniRef50_C6W947 Transcriptional regulator, AraC family n=1 Tax=A... 214 3e-54 UniRef50_B0SFV6 Transcriptional regulator, AraC-related n=2 Tax=... 213 7e-54 UniRef50_C8QBD0 Transcriptional regulator, AraC family n=1 Tax=P... 212 9e-54 UniRef50_A7JVV0 Possible AraC family transcriptional regulator n... 212 1e-53 UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type... 212 1e-53 UniRef50_A4XUD0 Transcriptional regulator, AraC family n=1 Tax=P... 211 2e-53 UniRef50_A7MMI8 Putative uncharacterized protein n=1 Tax=Cronoba... 211 2e-53 UniRef50_B5ZFX2 Transcriptional regulator, AraC family n=1 Tax=G... 211 2e-53 UniRef50_C9XTT1 Putative uncharacterized protein n=1 Tax=Cronoba... 211 2e-53 UniRef50_D1XPD5 Transcriptional regulator, AraC family n=1 Tax=S... 211 3e-53 UniRef50_C5CWM4 Transcriptional regulator, AraC family n=1 Tax=V... 210 3e-53 UniRef50_A0KNU2 Transcriptional regulator, AraC family n=1 Tax=A... 210 6e-53 UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=K... 210 6e-53 UniRef50_C7Q7L5 Transcriptional regulator, AraC family n=1 Tax=C... 209 1e-52 UniRef50_Q5YVF5 Putative transcriptional regulator n=1 Tax=Nocar... 209 1e-52 UniRef50_B0RCB3 Putative AraC-family transcriptional regulator n... 209 1e-52 UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=... 208 2e-52 UniRef50_A9C0Z2 Transcriptional regulator, AraC family n=1 Tax=D... 208 2e-52 UniRef50_D1BJS6 DNA-binding domain-containing protein, AraC-type... 207 3e-52 UniRef50_C9PQP0 AraC family transcriptional regulator n=1 Tax=Pa... 207 3e-52 UniRef50_Q0AK28 Transcriptional regulator, AraC family n=1 Tax=M... 206 6e-52 UniRef50_A6G0H9 Transcriptional regulator, AraC family protein n... 206 6e-52 UniRef50_C4DJ08 DNA-binding domain-containing protein, AraC-type... 205 1e-51 UniRef50_A9C071 Transcriptional regulator, AraC family n=3 Tax=C... 205 1e-51 UniRef50_A4W931 Transcriptional regulator, AraC family n=2 Tax=E... 205 1e-51 UniRef50_A6WBY5 Helix-turn-helix-domain containing protein AraC ... 205 2e-51 UniRef50_A6T1U9 Transcriptional regulator, AraC family n=2 Tax=P... 204 2e-51 UniRef50_Q3BT36 Transcriptional regulator, AraC family n=3 Tax=G... 204 2e-51 UniRef50_Q15XK9 Transcriptional regulator, AraC family n=1 Tax=P... 204 3e-51 UniRef50_C1YVX3 DNA-binding domain-containing protein, AraC-type... 204 3e-51 UniRef50_A1T3N4 Transcriptional regulator, AraC family n=1 Tax=M... 203 5e-51 UniRef50_Q7UL84 Probable araC family transcription regulator n=1... 203 6e-51 UniRef50_B7VTG6 Transcriptional Regulator, AraC family n=7 Tax=V... 203 7e-51 UniRef50_A6VS98 Helix-turn-helix-domain containing protein AraC ... 203 7e-51 UniRef50_A0Z8C5 Transcriptional regulator, araC family protein n... 203 7e-51 UniRef50_C8NCJ5 AraC family transcriptional regulator n=1 Tax=Ca... 203 8e-51 UniRef50_Q39N64 Transcriptional regulator, AraC family n=11 Tax=... 203 8e-51 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 202 9e-51 UniRef50_B5CQG2 Putative uncharacterized protein n=1 Tax=Ruminoc... 201 2e-50 UniRef50_D2PPT5 Transcriptional regulator, AraC family n=1 Tax=K... 200 3e-50 UniRef50_A5V6I7 Transcriptional regulator, AraC family n=1 Tax=S... 200 6e-50 UniRef50_D0C8I5 Transcriptional regulator n=2 Tax=Acinetobacter ... 199 8e-50 UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=... 199 8e-50 UniRef50_D0LQY3 Transcriptional regulator, AraC family n=1 Tax=H... 199 9e-50 UniRef50_A1UBR1 Transcriptional regulator, AraC family n=5 Tax=M... 199 9e-50 UniRef50_B2T994 Transcriptional regulator, AraC family n=1 Tax=B... 199 1e-49 UniRef50_C3JUH7 Transcriptional regulator, AraC family n=3 Tax=N... 199 1e-49 UniRef50_A0NP18 AraC-type DNA-binding domain-containing protein ... 199 1e-49 UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=P... 198 1e-49 UniRef50_A9CLF9 Transcriptional regulator, AraC family n=5 Tax=R... 198 2e-49 UniRef50_A1SPZ5 Transcriptional regulator, AraC family n=1 Tax=N... 198 2e-49 UniRef50_A9GPX5 Probable transcriptional regulator n=1 Tax=Soran... 197 3e-49 UniRef50_Q0HZJ9 Transcriptional regulator, AraC family n=13 Tax=... 197 3e-49 UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteri... 197 4e-49 UniRef50_Q0KAF9 Transcriptional regulator, AraC-family n=9 Tax=B... 197 4e-49 UniRef50_A8LA37 Transcriptional regulator, AraC family n=1 Tax=F... 197 4e-49 UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=C... 196 5e-49 UniRef50_C9YV93 Putative transcriptional regulator n=2 Tax=Strep... 196 7e-49 UniRef50_C3RLG7 Transcriptional regulator n=2 Tax=Bacteria RepID... 196 8e-49 UniRef50_Q2SZ66 Transcriptional regulator, AraC family n=31 Tax=... 196 9e-49 UniRef50_Q0K0F9 Transcriptional regulator, AraC-family n=1 Tax=R... 195 2e-48 UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecali... 193 5e-48 UniRef50_D2Q0X6 Transcriptional regulator, AraC family n=1 Tax=K... 193 6e-48 UniRef50_A3YG00 Transcriptional regulator n=2 Tax=Proteobacteria... 193 6e-48 UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus R... 193 6e-48 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 193 8e-48 UniRef50_C7PWW7 Transcriptional regulator, AraC family n=13 Tax=... 192 1e-47 UniRef50_A6SWK7 Transcriptional regulator, AraC family n=3 Tax=B... 192 1e-47 UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=C... 191 1e-47 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 191 2e-47 UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Rum... 191 2e-47 UniRef50_UPI0001788255 transcriptional regulator, AraC family n=... 191 3e-47 UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostri... 190 4e-47 UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=... 190 4e-47 UniRef50_C7GFI0 Transcriptional regulator, AraC family n=2 Tax=C... 190 4e-47 UniRef50_B5Y1B2 Transcriptional regulator, AraC family n=1 Tax=K... 190 5e-47 UniRef50_Q0S0T6 Transcriptional regulator n=1 Tax=Rhodococcus jo... 190 7e-47 UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=P... 190 7e-47 UniRef50_B6YYF5 Transcriptional regulator, AraC family n=1 Tax=P... 190 7e-47 UniRef50_Q39MN2 Transcriptional regulator, AraC family n=1 Tax=B... 189 8e-47 UniRef50_Q3BY04 Transcriptional regulator, AraC family n=2 Tax=X... 189 1e-46 UniRef50_A6T2N0 Transcriptional regulator, AraC family n=9 Tax=P... 188 1e-46 UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostri... 188 2e-46 UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminoc... 188 2e-46 UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=C... 188 2e-46 UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=B... 188 2e-46 UniRef50_A7B0D2 Putative uncharacterized protein n=1 Tax=Ruminoc... 188 2e-46 UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1... 188 3e-46 UniRef50_Q9KBM0 Transcriptional regulator (AraC/XylS family) n=1... 187 3e-46 UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=C... 186 6e-46 UniRef50_A8RPA3 Putative uncharacterized protein n=3 Tax=Clostri... 186 6e-46 UniRef50_B6FM02 Putative uncharacterized protein n=2 Tax=Clostri... 186 6e-46 UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=C... 186 6e-46 UniRef50_Q13NB1 Transcriptional regulator, AraC family n=6 Tax=B... 186 7e-46 UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regul... 186 8e-46 UniRef50_B4WW69 Transcriptional regulator, AraC family protein n... 186 1e-45 UniRef50_B1M4B9 Transcriptional regulator, AraC family n=1 Tax=M... 185 1e-45 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 185 1e-45 UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia... 185 1e-45 UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dict... 185 1e-45 UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=... 185 1e-45 UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=C... 185 1e-45 UniRef50_UPI000178AA6A transcriptional regulator, AraC family n=... 185 2e-45 UniRef50_C6D7E7 Transcriptional regulator, AraC family n=1 Tax=P... 185 2e-45 UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonel... 185 2e-45 UniRef50_A3ZY19 Probable transcriptional regulator n=1 Tax=Blast... 184 3e-45 UniRef50_C8P2X0 Putative uncharacterized protein n=1 Tax=Erysipe... 184 3e-45 UniRef50_A3Y511 Transcriptional regulator AraC family protein n=... 184 4e-45 UniRef50_Q8YSB8 Transcriptional regulator n=2 Tax=Nostocaceae Re... 184 4e-45 UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC... 183 4e-45 UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacte... 183 4e-45 UniRef50_UPI000178AA9D transcriptional regulator, AraC family n=... 183 4e-45 UniRef50_B7DQ49 Transcriptional regulator, AraC family n=1 Tax=A... 183 5e-45 UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=C... 183 6e-45 Sequences not found previously or not previously below threshold: >UniRef50_P77379 Uncharacterized HTH-type transcriptional regulator ykgD n=85 Tax=Enterobacteriaceae RepID=YKGD_ECOLI Length = 284 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT Sbjct: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY Sbjct: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG Sbjct: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR Sbjct: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP Sbjct: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 >UniRef50_A0NP67 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NP67_9RHOB Length = 315 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 141/307 (45%), Gaps = 31/307 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 DAL+++L +G++ + W + A +V R+H +G L + + Sbjct: 4 DALTQILDALKLRGSVYFHTCFSPPWAVRVPAFG-NVARFHMAMRGGCWLAVDGLDKPIR 62 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES-----------------------------TCIVCGT 91 L G++ ++P +AH LS + + CG Sbjct: 63 LATGDLAVIPHGAAHILSDEPDRPAADVDEVVRQSGYAGEGALYYGGPDEDMACKLFCGH 122 Query: 92 LRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 + + + L + P ++ WL + F+ E R+ PG +A+ ++ Sbjct: 123 FEFEEGSVHPLLDALPAVIHLPNTQTMNAFWLEAVMRFVASEVRAGQPGSEAIIHRLTEI 182 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 F VR ++ + L+ +L+P+LG + ++ P WTVESLA A MSR FA Sbjct: 183 IFIQVVRTFVDREGDRAGCLAAVLNPKLGRSMSKIHLAPEKPWTVESLAREAGMSRTVFA 242 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 F ++ G TPLA +T R++ A + LP++ IAE++GY+SE++F++AF R+F T Sbjct: 243 DRFTNLVGMTPLAYVTHWRMERARRDIRETDLPLIDIAENIGYSSEAAFNRAFKRQFNQT 302 Query: 272 PGEYRER 278 PG+ R + Sbjct: 303 PGQVRRQ 309 >UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C6AKL4_AGGAN Length = 293 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 31/299 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L+ L+ +G I+ C DW + H + R+H ++QG ++ + + Sbjct: 1 MDYLDQLIRLSGIEGEINILCRFWGDWLVHHKQEPNLIGRFHIVSQGTCQIRLKDQ-TYH 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNEST-----------------------CIVCGTLRLQHS 97 L+PG+VV LP H + H + T + CG R + Sbjct: 60 LKPGDVVFLPYGEEHIIYHGADTETQITKTTQGVFTLHRNSSNESGDFEMFCGYFRYLNV 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 A+ L +LP + + + + + L++E G + + +C FT + Sbjct: 120 AQSLLFNLP------HWHLAGNNDSIMALLKLLRKE-TEDNLGNEVVVDALCNILFTYLI 172 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R+++ + IL L RL + ++ P +W++E LA MSRA+F + F+ Sbjct: 173 RDYLQHHQVNQGILGALQDKRLKNAVNAIIANPKESWSMEVLAESCAMSRANFIRAFKQK 232 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G P LT +R+ +A + P+ VIA VGY S++ F K F +G +PG+YR Sbjct: 233 TGILPGKFLTIMRMNMAGMLLKNTQKPISVIASEVGYQSDTHFTKVFKSYYGISPGKYR 291 >UniRef50_C5CL63 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CL63_VARPS Length = 318 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 37/315 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHG----------AGELSVIRWHALTQGAAK 50 MD LS +L +G + N + + W G + H + QG Sbjct: 1 MDVLSDVLRTIRLEGALFLNGDMHAPWCFKVPKGAHMAQLLRPGAQRLAICHLVLQGECW 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLSHV--------------------------DNES 84 ++ GE G+V+ +P +H + + + Sbjct: 61 AQVDGGEPIRAHAGDVIAVPHGDSHVVGSGLLQAAVDVAHVVNPRAPELERIRYGGNGDR 120 Query: 85 TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 T +VC + A L + LF + W+ +++ F+ ++ S PG + + Sbjct: 121 TVLVCSWFAYEGDAPNPLMANIPRLFTTSLRSRPAGPWIEQSVNFVLGDAASHTPGSEMV 180 Query: 145 CSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +++ F +R +I + L+ L P + + M P WTV++LA Sbjct: 181 AAKVAEVLFAEVLRGYIESMPANNPGWLAGLRDPHVSRCLALMHGDPARNWTVDALAQEI 240 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 H+SR+ A F ++ G P+ LT+ R+ +AA M ++ + IAE VGY SE++F++A Sbjct: 241 HVSRSVLADRFAELVGAPPMHYLTRWRMILAAGMLRKDQGNLARIAEDVGYESEAAFNRA 300 Query: 264 FVREFGCTPGEYRER 278 F RE+G +PG +R+ Sbjct: 301 FKREYGVSPGVWRQN 315 >UniRef50_A9DAF9 Transcriptional regulator, AraC family protein n=3 Tax=cellular organisms RepID=A9DAF9_9RHIZ Length = 334 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 83/305 (27%), Positives = 134/305 (43%), Gaps = 29/305 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ L + G + L + W + + V+ + +T GA LE+ E L Sbjct: 13 DPLAETLHMLRLTGALYCRGELTAPWAVAIPKLD-GVMTFMVVTSGACWLELEGHEPRFL 71 Query: 62 RPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTLRL 94 R G++ L+P ++ H LS E T + G +R Sbjct: 72 RQGSLALIPHSTPHVLSSAKGLAGAPLFDLPVEKVSERYEVLRHGGGGELTRSMYGVVRF 131 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 A L L + + WL+ + F+ E+ + PG + + +++ Sbjct: 132 DDVAAEHLLKLLPEIIMIDSWDDQTGGWLQSTLRFIANEAITLKPGGETVITRLSDVVVI 191 Query: 155 LAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R W+ + + L L P++G + M PGH W+VE+LAS A MSR++FA Sbjct: 192 QAIRSWLETSPSADTGWLKALRDPQVGKTLALMHREPGHDWSVETLASRAGMSRSAFAAR 251 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F ++ G TPL LTK R+++A + + VI+ +GY SE+SF +AF R FG PG Sbjct: 252 FSELVGETPLKYLTKWRMRVARNRLIDTSDALAVISNDLGYQSEASFCRAFKRVFGQPPG 311 Query: 274 EYRER 278 R Sbjct: 312 SIRRA 316 >UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=Burkholderia RepID=Q397S2_BURS3 Length = 322 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 119/305 (39%), Gaps = 31/305 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L P+ + DW A I++ A+ +G+ + E Sbjct: 1 MDPLSDVLTLLKPRSQFYASLDAAGDWSFSFPANP--GIKFTAVVRGSCWGIVDDLAEPV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVD------------------------NESTCIVCGTLRLQ 95 PG+ LL LS ++ G + Sbjct: 59 RFNPGDCFLLNSGRRFVLSSDPALPPADCQPVMDAAARDGVAVWNGGGEVLLISGRFDVS 118 Query: 96 HS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 S A +LP + + LR ++ L +E R PG + + + Sbjct: 119 ASHAAPLFDTLPAIVNVPSAT--GHAEVLRWSLEQLAEEVRQERPGSALMATHLVHCMLV 176 Query: 155 LAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R + N L ++GA I+ + P H WT+ LA IA MSR+ FAQ Sbjct: 177 QVLRLHLETSTNLSPGWFLALSDRQIGAAIRAIHADPAHPWTLAELAKIAGMSRSGFAQR 236 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F+++ G T + +T+ R+ AA + V IA S+GY SES+F AF R C+P Sbjct: 237 FKELEGGTAIGYVTRWRMMTAANLLRDGEQSVSSIAFSLGYESESAFSTAFKRTMSCSPL 296 Query: 274 EYRER 278 +YR + Sbjct: 297 QYRRQ 301 >UniRef50_A6GC16 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC16_9DELT Length = 316 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 135/310 (43%), Gaps = 30/310 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + GT+ LGS + L E R+H +G LE+ GE Sbjct: 1 MDLLSDILRVIPLHGTLYFRAELGSPFGLAVPRNE-GAARFHIALEGECTLELGEGEGVR 59 Query: 61 LRPGNVVLLPQNSAHRL---------------------------SHVDNESTCIVCGTLR 93 LR G + L+P + H L T +VCG Sbjct: 60 LRRGELALVPHGARHHLVDAPARSVVELEAALAASGWTGAGPFRYGGPGARTTLVCGHFA 119 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + L + + ++ WL + + ++ +E+ G +A+ S++ F Sbjct: 120 FPPGVLHPLLDALPRVLHFGADAGHDFRWLDDVMRYIGEEAGGDRAGREAVLSRLAEILF 179 Query: 154 TLAVREWIAQ--VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R ++ ++ +N+L+ + P+LG + + E P W++++LA A MSR FA Sbjct: 180 IHMLRAYVESCEEDSAENVLAAIADPQLGRALTLIHERPAQKWSLQALAQGAGMSRTLFA 239 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F TP+ LT+ R+++A + V +A+SVGY SE++F +AF R G Sbjct: 240 ERFAACVQLTPMQYLTRWRIELAKAQLRQSERSVAEVADSVGYLSEAAFGRAFKRLVGVG 299 Query: 272 PGEYRERVRQ 281 PG YR ++ Sbjct: 300 PGGYRASWQR 309 >UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacteria RepID=B9JNI2_AGRRK Length = 324 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 126/302 (41%), Gaps = 32/302 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L P+ + G DW + G E I+ +A+ G L + + + Sbjct: 1 MDPLSDVLSLLKPRSYMFGGFDAGGDWSIRFGQHE--GIKCYAVVSGQGWLLVESVSDAV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVD------------------------NESTCIVCGTLRL- 94 L G+ +LP+ L+ IV G L Sbjct: 59 RLTTGDCFVLPRGWPFVLTSNPSLSPIDYRQLFPTRPNGSMRVLNNGGDFSIVGGHFTLT 118 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 L LP + + + LR + ++QE R PG + Q+ T Sbjct: 119 GGHVGVLLAMLPPIVHIR---TEADRESLRWCMERMRQELREPQPGGFLIAQQLAYTMLV 175 Query: 155 LAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R +A+ L L ++ I M E P H WT+ SLA A MSR +F Sbjct: 176 QALRLHLAEGVTGGVGWLFALADRQMAVAITAMHEDPAHRWTLASLAERAGMSRTTFTLK 235 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F++ GT+P+ LT+ R+ +A + + + + VIA S+GY SES+F AF R GC+P Sbjct: 236 FKETVGTSPMDYLTRWRMMVAGERLTHSSDSISVIALSLGYESESAFSTAFKRMMGCSPR 295 Query: 274 EY 275 +Y Sbjct: 296 QY 297 >UniRef50_P45008 Uncharacterized HTH-type transcriptional regulator HI1052 n=17 Tax=Haemophilus influenzae RepID=Y1052_HAEIN Length = 298 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 129/303 (42%), Gaps = 31/303 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L L +G I+ C +WQ+ H + +H + QG L + + F Sbjct: 1 MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWLTL-NEKQFH 59 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 L+ G+V LPQN H + + + CG Q Sbjct: 60 LKEGDVFFLPQNQPHSMHYSANKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQQ 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 A S+PE L + + + + QE++ G ++ + Sbjct: 120 DA-LLTASMPEYLHINLCDTP-----IHPLVQLFLQEAQKNDAGTKSVVDALSNVLLIYI 173 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R I Q E+ IL L RL + +L+ P + W +E LA +A MSRA+F ++F+ Sbjct: 174 LRHAIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIRIFQQ 233 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G +P LTK+RLQ AA + + V+ IA VGY SE+ F K F + +P +YR Sbjct: 234 HIGMSPGRFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYR 293 Query: 277 ERV 279 + V Sbjct: 294 KSV 296 >UniRef50_C5BRT4 Helix-turn-helix-domain containing protein, AraC type n=2 Tax=Gammaproteobacteria RepID=C5BRT4_TERTT Length = 320 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 127/301 (42%), Gaps = 31/301 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L +L G++ L + W + + +H +TQG L + GE L Sbjct: 12 DPLGEILYQLRMDGSLYAQSYLSAPWGVEMPELP-GKMMFHIITQGQCWLHVEGGEPVLL 70 Query: 62 RPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGTLRL 94 R G++VL+P HR+ T + C + Sbjct: 71 RQGSLVLVPHGRGHRVMDAPGSPVAKLFDLPIRRITDRYEELHYGGGGASTHLTCCVMSF 130 Query: 95 QH-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + R + LP+ L + + V+ +WL+ + F+ +E+R PG + + + Sbjct: 131 DPLTGRQLIPHLPDYLHIDSWDTDVD-SWLQTTLRFIAREAREQKPGGQTIIANLADILV 189 Query: 154 TLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 A+R W+ A T L+ L +G+ + + P WTV++LA +SR+ F+ Sbjct: 190 IQAIRAWLDATEETSAGWLAALRDKYIGSALAAIHREPERNWTVDTLAREVGLSRSGFSA 249 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F ++ G + +T R+Q+A + + +A+ +GY SE++F +AF R G +P Sbjct: 250 RFSELVGESAKRYITHWRMQLARSKLLDSGISMGELADQLGYHSEAAFCRAFKRVIGVSP 309 Query: 273 G 273 G Sbjct: 310 G 310 >UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01W15_SOLUE Length = 327 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 39/322 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGA----------GELSVIRWHALTQGAAK 50 MDA S +L G + + + W A G V+ +H + +G A Sbjct: 1 MDAFSEILSGVKLNGAVFFSAEFSAPWGFSSPASKQMAATLGLGASHVVLYHFVVEGGAL 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLSHV----------------------------DN 82 +E+P + L+PG++V+ P H +S Sbjct: 61 VELPERQSVELKPGDIVIFPHGDPHHMSSGAEATRPFPNYGIMSKIKARDLSPLHAGGGG 120 Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 E++ VCG + + S +F + +WL +I L +E+ S G + Sbjct: 121 ETSRFVCGYMTCDPYVSRPILSGLPAVFKVNIRTDRAGHWLENSILHLVEEAASGRVGSE 180 Query: 143 ALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 A+ +++ F +R ++A + ++ L+ P +G + + H WT+ LA Sbjct: 181 AMLAKLSEALFVDTLRRYVAGLPDQQVGWLAGARDPIVGKSLGLLHSRVSHPWTIADLAD 240 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 +SR++ + F P+A LT+ RL +AA+ + + V IA VGY SE++F+ Sbjct: 241 EVGISRSALVERFTRYLSEPPMAYLTRWRLTLAARSLEKTSRGVAEIAADVGYESEAAFN 300 Query: 262 KAFVREFGCTPGEYRERVRQLA 283 +AF REFG PG YR + Sbjct: 301 RAFKREFGSPPGRYRTHHKSSP 322 >UniRef50_B5ZZ22 Transcriptional regulator, AraC family n=5 Tax=Rhizobiales RepID=B5ZZ22_RHILW Length = 329 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 129/305 (42%), Gaps = 31/305 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS +L G C L W + +L +R+H ++QG + Sbjct: 16 MDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQL--LRFHFVSQGPCWIHTEVEGWQE 73 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGTLR 93 L G++VLLPQ AHRL+ + + + CG++ Sbjct: 74 LNDGDLVLLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREGMGANSTLFCGSMA 133 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 L A + L +L + + + + + + + E+ G + S++ Sbjct: 134 LGAHALHPLIALMPPI-IKGCDVAGNDPIVGPLLAAMSAEATQPQMGSATVLSRMADLLA 192 Query: 154 TLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W+ + L+ + P +G V+ M PGH WT+ESLA +A SR+ FA+ Sbjct: 193 ARLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLAGVAGQSRSIFAE 252 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G L +LR+Q+A + + + + +A +GY SE+SF +AF R +P Sbjct: 253 RFSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASFARAFKRVTNVSP 312 Query: 273 GEYRE 277 G R Sbjct: 313 GIVRR 317 >UniRef50_Q7MC25 AraC-type DNA-binding domain-containing protein n=10 Tax=Gammaproteobacteria RepID=Q7MC25_VIBVY Length = 300 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 12/286 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M+ +S +L G++ + + W +L +H + +GA + G I Sbjct: 19 MEVMSDILRAIRVVGSVYFCSQVEAPWTKTFN--DLDHASFHMIRRGACWANV-DGRIEQ 75 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE--------STCIVCGTLRLQHSARYFLTSLPETLFLA 112 L G+++ L H LS E ST ++CG+ +A L + + + Sbjct: 76 LNAGDLIFLGPGQNHLLSSQSPEKGKSDLTESTLLLCGSFSFTRTATTPLLDVFPRVTIV 135 Query: 113 PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILS 172 +Y WLR L E S PG + + +++ +R + T L Sbjct: 136 RDQDLAKYPWLRSTFDQLSSEYLSQGPGSELIVNKLTEIILVELIRINFGREQTSP-FLE 194 Query: 173 LLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQ 232 L R+ +Q + + P WT+E++A+ MSRA+FA F + G LT LR+Q Sbjct: 195 ALNDKRISRALQLLHDHPETGWTLETVANQIGMSRAAFANRFSSLVGKPMFEYLTNLRMQ 254 Query: 233 IAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 A ++ LP+ IAE VGY SE +F F + G TP +R + Sbjct: 255 KAQELLLESLLPIDEIAEQVGYESERAFTLTFKKHTGTTPKRFRAQ 300 >UniRef50_B1KKM5 Transcriptional regulator, AraC family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKM5_SHEWM Length = 330 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 76/298 (25%), Positives = 115/298 (38%), Gaps = 27/298 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LS +L + + S W + E +H + +G+A L Sbjct: 25 DVLSDVLRMIRLYASSYYCAEFSSPWGIDEPQAECG--TFHVVIRGSAWLMTEELTSPVF 82 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES------------------------TCIVCGTLRLQH 96 L G+++ P S H++S ++CG + Q Sbjct: 83 LSTGDIIAFPTGSPHQISEQPGSQLMSGGEVLEKIRSNSSPFSDGQSVVTLLCGYFQYQT 142 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 L ++ E WL I L ESRS PG + ++ Sbjct: 143 DISLPLLRDMPSMLHIKTEEEPELAWLNHLIKTLAYESRSLQPGNAVVVDRLTEVLVIQL 202 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + L +L + + + P AWTVESL MSR SFA F+ Sbjct: 203 LRWHMRHQRNTPGYFQALGDDKLSRALILIHQEPSKAWTVESLGRAVSMSRTSFANRFQS 262 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G TPLA L++ R+ IA + L ++ IAE VGY SE+SF KAF + G +PG+ Sbjct: 263 IVGMTPLAYLSQWRMHIAYGLLVEGELSMLSIAEQVGYKSEASFGKAFKKIVGISPGK 320 >UniRef50_B6A5N0 Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B6A5N0_RHILW Length = 301 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 114/297 (38%), Gaps = 22/297 (7%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L L + + + W + + I +H + +G A L Sbjct: 1 MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRL--DDGAAIAFHLIRRGGAWLRRDGQADVL 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN--------------------ESTCIVCGTLRLQHSARY 100 L G++V+L + H L E T I CG + Sbjct: 59 LEEGDLVILSGGTPHELVDEPETKAEPVECFGKRKFDLADCFERTEIFCGQFQPDVVRGQ 118 Query: 101 FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 F ++ + + L E S PG + L ++ + +R Sbjct: 119 FGSAALPPFVHLKSHEVAGDAGITGLTTLLTSELDSERPGTELLMERLADSLLVYVLRSA 178 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 AQ LS + +L V + + P WTV+++A A +SRA+FA+ F G Sbjct: 179 AAQAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRFNKRVGE 238 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 PL LT R+ +AA +P+ ++A +GY SE++F +AF + FG PG YR+ Sbjct: 239 PPLGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGAYRK 295 >UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQD3_9PROT Length = 325 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 76/310 (24%), Positives = 125/310 (40%), Gaps = 28/310 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L +G S W + R+H + QG + P+G Sbjct: 1 MDVLDDVLDTLNLKGAFYFRTDFSSPWAVTVPDLR-QAARFHLVVQGRCHVGFPSGASAD 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGTLR 93 + PG++VL+P+ +H L+ V T +VCG Sbjct: 60 IGPGDLVLIPRGQSHVLADVAGREAPPLETVLAGYDGRGVLVVGTGDSSATTQMVCGHFT 119 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + A + + + WL + + + ++ S G A +++ F Sbjct: 120 FRAGADHPILRALPEYLVTTNAMRARRPWLDDILRLVVRQVFSDTIGSTATVTRLSEIVF 179 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R I Q +++L ++G +Q + P +WTVESLA+ MSR+ FA+ Sbjct: 180 IELLRVGIGQSAGLRSVLEAFQDQQIGGALQLIHAEPERSWTVESLAASVGMSRSRFAER 239 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F D+ G P++ LT RLQ A + V +A GY S ++F +AF +FG P Sbjct: 240 FSDLMGAGPMSYLTDWRLQKALSLLDDARCSVQQVASRTGYQSPAAFTRAFTGKFGLAPT 299 Query: 274 EYRERVRQLA 283 EYR +A Sbjct: 300 EYRRSPDNIA 309 >UniRef50_B2TAQ8 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TAQ8_BURPP Length = 349 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 132/325 (40%), Gaps = 43/325 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL----------PHGAGELSVIRWHALTQGAAK 50 MDALS +L L G + N + W L ++ +H +T+G Sbjct: 1 MDALSDVLRLVRLGGAVYLNGDFTAPWCLYGQADAGLCGSFLPPAERIVSYHLITEGGCW 60 Query: 51 LEMPTGE--IFTLRPGNVVLLPQNSAHRLSH----------------------------- 79 + + G ++++PQ AH L Sbjct: 61 ASLADDPESAIYVAAGELLVVPQGEAHLLGSSLDVTPGPTGELLESQLRNAPGQVMALCY 120 Query: 80 -VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 + T +VCG L + + S +F + + + WL ++ F E+ Sbjct: 121 GGGGDRTRLVCGFLACDDTLSNPVLSALPRIFKVDMRNDPQSAWLESSLRFAAAEAAEWR 180 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G + +++ F AVR I + +++ L+ + +G + M P H WTV+ Sbjct: 181 VGSAIVLARLSELLFVEAVRRCIDALPSDRKGWLAGVGDRFVGRALALMHAQPAHGWTVD 240 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA A +SR++ AQ F + G P+ L RLQIAAQ T + +A+ VGY SE Sbjct: 241 ELARKAGLSRSALAQRFTQLLGQPPMQYLAHWRLQIAAQELRGGTKSLAAVADQVGYESE 300 Query: 258 SSFHKAFVREFGCTPGEYRERVRQL 282 ++F++AF REFG P +R ++ Sbjct: 301 AAFNRAFKREFGMPPAGWRRSRGEM 325 >UniRef50_B3PSX8 Probable transcriptional regulator protein, AraC family n=3 Tax=Rhizobium RepID=B3PSX8_RHIE6 Length = 326 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 32/304 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS +L G C L W + +L +R+H +++G + L Sbjct: 15 DALSEILRDFRLSGVNYGRCELRHPWSIAFAQQQL--LRFHFVSEGPCWIHTEAQGWQEL 72 Query: 62 RPGNVVLLPQNSAHRLSHVDN---------------------------ESTCIVCGTLRL 94 + G++VLLPQ HRL+ + ++ + CG++ L Sbjct: 73 QDGDLVLLPQGVEHRLASKPDVVGDSLKSCQVTKLGGNVCEVVQEGTGATSTLFCGSMAL 132 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 +A L +L + + + + + + + E+ G + S++ Sbjct: 133 GANALNPLIALMPPI-IKGCDVAGNDPIVGPLLAAMTAEASQPQIGSATVLSRMADVLVA 191 Query: 155 LAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R W+ + L+ + P +G + M PGH WT+E+LA +A SR+ FA+ Sbjct: 192 RLIRCWVNCSGASTSGWLAAIRDPHIGRALAAMHRDPGHDWTLETLAGVAGQSRSIFAER 251 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F + G L +LR+Q+A ++ + + V +A +GY SE+SF +AF R +PG Sbjct: 252 FSAILGEGAARYLARLRMQLARELLGQ-NMSVAAVASQLGYESEASFARAFKRITSVSPG 310 Query: 274 EYRE 277 R Sbjct: 311 VVRR 314 >UniRef50_B6A116 Transcriptional regulator, AraC family n=5 Tax=Rhizobium RepID=B6A116_RHILW Length = 323 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 80/304 (26%), Positives = 122/304 (40%), Gaps = 30/304 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L P TI +W + G I+ + + G L + E Sbjct: 1 MDPLSEVLSLLKPSSTISSGFDAAGEWSIQFGDQHRQ-IKCYVIVTGGCWLAVDGVDEAV 59 Query: 60 TLRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQ 95 L G+ +LP+ RL+ + + + Sbjct: 60 RLEQGDCFVLPRGLPFRLASDLGLSPVPAPTLFPPARAGGVVTLNGGGTFSLAGARFAVG 119 Query: 96 H-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 SA L LP + L+ E + LR +I + QE S PG + + Sbjct: 120 GNSADMLLEMLPPIVHLS---RETERDALRWSIERMMQELSSHQPGGHLMAQHLSHMMLL 176 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R ++ + K L L I+ M P WT+ L A MSR+ FA+ F Sbjct: 177 QALRIHLSDGHQRKGWFYALADRNLSGAIRAMHANPARNWTLAELGETAGMSRSVFAERF 236 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G TP+ L++ R+ +A F PV V+A ++GY SES+F KAF R GC+P + Sbjct: 237 KATVGETPIEYLSRWRMLLACSRFESGDDPVSVVAPALGYQSESAFSKAFKRVVGCSPRQ 296 Query: 275 YRER 278 YR + Sbjct: 297 YRAQ 300 >UniRef50_A4F0L2 Transcriptional regulator, AraC family protein n=7 Tax=Rhodobacterales RepID=A4F0L2_9RHOB Length = 330 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 82/318 (25%), Positives = 131/318 (41%), Gaps = 39/318 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIFT 60 D LS +L + QGT+ W + H +V R+H +G + +P +G+ Sbjct: 15 DLLSDILTRLSLQGTLYFRTSFTPPWGV-HVPSYQNVARFHFAHRGECLVHLPQSGDTIR 73 Query: 61 LRPGNVVLLPQNSAHRL-------------------------------SHVDNESTCIVC 89 L G++VL+P + H L D+ T ++C Sbjct: 74 LAQGDLVLIPHGAEHMLFCSTTGKEAVLSLDRVIEASGYTGEGVLVYGGDEDDRDTQLIC 133 Query: 90 GTLRLQ-----HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 G + L LP L + + WL + + E+ G D + Sbjct: 134 GHISYGVQGRAGGGHMLLDRLPPYLHIQDYGEAR-GAWLEATLRVIGAEAGKDRLGGDLI 192 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 ++ F A+R + ++ + + L+ P+L + + P +WTVE LA IA Sbjct: 193 ALKMSEALFAQAIRVHLESLSPDDSSLAGFADPQLSRALSAFHKAPAQSWTVEQLARIAG 252 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSR FAQ F G TP+ LT R+QIA Q + L V AE GYASE++F + F Sbjct: 253 MSRTGFAQSFSAKMGLTPMQYLTTWRMQIACQGLVEQGLNVADAAEMAGYASEAAFSRVF 312 Query: 265 VREFGCTPGEYRERVRQL 282 ++ G +P YR + + Sbjct: 313 RKQIGVSPAAYRMQREEA 330 >UniRef50_C6AQ53 MtrA n=4 Tax=Pasteurellaceae RepID=C6AQ53_AGGAN Length = 302 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 79/308 (25%), Positives = 135/308 (43%), Gaps = 35/308 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVI-RWHALTQGAAKLEMPTGEIF 59 MD L +L+ L G ++ C+ WQ+ E + +H + QG L + Sbjct: 1 MDCLDKLIQLAQVSGEVNIRCLFQGQWQIQPNITENQYVGAFHLIEQGECWLTL-GERQI 59 Query: 60 TLRPGNVVLLPQNSAHRLSHV---------------------------DNESTCIVCGTL 92 L+ G++ LPQN H ++ ++ + CG Sbjct: 60 HLQAGDIFFLPQNRPHLIAGQAQNLSENNVPQQQDNASTLFKVYSIGQNSADLKMFCGLF 119 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + +LPE L L+ ++ + +QQE+ + G +L + Sbjct: 120 YYSKP-SLLIDALPEYLHLSLNGTP-----VQSVVQLMQQEADNHQQGAKSLIDALVTVL 173 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 F +R + + +L+ RLG V+QQ+ P AW +++LA +A MSRA+F + Sbjct: 174 FIYILRHGLQENLLHCGLLAAFQDKRLGKVLQQLFNAPQQAWNMDALAELAAMSRANFMR 233 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 +F+ G P LT+LRLQ AA + ++ V+ +A VGY SE+ F KAF +G +P Sbjct: 234 VFQQKIGMAPGKFLTQLRLQEAALLLNKTQKSVLAVALDVGYQSEAHFSKAFKALYGVSP 293 Query: 273 GEYRERVR 280 +YR+ + Sbjct: 294 SQYRKAEQ 301 >UniRef50_A7NLR2 Transcriptional regulator, AraC family n=2 Tax=Chloroflexaceae RepID=A7NLR2_ROSCS Length = 342 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 127/306 (41%), Gaps = 33/306 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IF 59 MD+LS +L + ++ LGS W L +V +HAL +G L + + Sbjct: 20 MDSLSHVLNTVRLRSSVYCRSELGSPWGLHFAPRSCAV--FHALHRGNGYLCVEGDAGLL 77 Query: 60 TLRPGNVVLLPQNSAHRL-----------------------SHVDNESTCIVCGTLRLQH 96 LR G+VVLLP H + D + I+CGT +H Sbjct: 78 PLREGDVVLLPGGEEHSILETPDAPLFRNLELDQWGECALMRWSDAPTAVILCGTFDFEH 137 Query: 97 SARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 Y L LP + + +S L + + E+ + P + ++ F Sbjct: 138 IGTYALLKHLPRVVHIPRSENSA----LNSILALMASEAEAGRPAKEVALRRLADILFIQ 193 Query: 156 AVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 ++ W+ E+ L P +G ++ + P H+WTV +LA SR+ FA F Sbjct: 194 IIQRWVEIEGIERCGWFGALHDPLIGRALELIHAQPQHSWTVAALARAVACSRSFFAARF 253 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFS-RETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 + G P+ L + RLQ+A + + IA +GY SE++F KAF R G PG Sbjct: 254 TALVGEPPMEYLRRWRLQLATHLLMDHAHVSAGDIAARIGYHSEAAFSKAFKRSLGIAPG 313 Query: 274 EYRERV 279 YR+R Sbjct: 314 AYRKRH 319 >UniRef50_Q2BP83 AraC-type DNA-binding domain-containing protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP83_9GAMM Length = 306 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 72/300 (24%), Positives = 123/300 (41%), Gaps = 24/300 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS +L + I + W + + +H + G + L + E L Sbjct: 4 DALSDILKWLRLKAEIYVHADFQGCWAVD--TSGSRKVPFHLVNSGRSWLHLEGQEPRLL 61 Query: 62 RPGNVVLLPQNSAHRLSH--------------------VDNESTCIVCGTLRLQHSARYF 101 G++V+ P+++ H LS D + T + CG + + Sbjct: 62 SAGDLVMFPRDTTHYLSSESLCPTPALVEETLNNQGDMGDGQITGLACGFFEFESQEAWP 121 Query: 102 LTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI 161 + + ++ + R + L E PG + + F +R + Sbjct: 122 ILDKLPDAVVLELSDTSRLGNTRALLQLLIAELEEHGPGYLQSVNHLTHVLFIHILRSQL 181 Query: 162 AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTT 221 + +L L HPR+G + Q+ P AW++E LA A MSRA+FA F+ ++G T Sbjct: 182 DNIG--SGLLKALFHPRIGLSLSQIHSQPEKAWSLELLAREAGMSRAAFASEFKALTGKT 239 Query: 222 PLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 ++ L++ R+ A ++ L + IAE GY SE +F KAF + G PG R R+ Sbjct: 240 AMSYLSEWRMLQATELLRSTNLSTIEIAERCGYLSEVAFRKAFKKVTGTAPGAVRSEGRR 299 >UniRef50_A1TZC9 Transcriptional regulator, AraC family n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TZC9_MARAV Length = 327 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 125/313 (39%), Gaps = 40/313 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L L GT+ L S W + + +H +TQG+ L + L Sbjct: 14 DPLGETLCSLRMDGTVYATAELISPWGMEMPPLG-GKMMFHIVTQGSCWLRFKDQDSLLL 72 Query: 62 RPGNVVLLPQNSAHRLSHV-----------------------------------DNESTC 86 + G++ L+P+ H +SH E T Sbjct: 73 KTGDLALVPKGEGHCISHSNNQPCEPFFDIPVTRLTDRFEFMRYGGAGTEEQRTGEEETR 132 Query: 87 IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 + CG L A + LP+ + + + L I ++QE+R+ PG + Sbjct: 133 LTCGVLGFDQIAAQKLIRELPQCIHIKG-DDGALPAELTTLIQLMEQEARALSPGGVTVM 191 Query: 146 SQICATFFTLAVREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + + A+R WI + K L L P+LG + + P WTV LA A Sbjct: 192 AHLADIIVIQAIRHWINSSAEASKGWLGALKDPKLGKALAAIHAHPEADWTVSRLARHAG 251 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSR+ F+ F +V GT+ LT+ R+ +A + + + +AE +GY SE++F +A+ Sbjct: 252 MSRSGFSARFTEVIGTSVKQYLTEWRMNLARLRIGQSPVTLTELAEELGYQSEAAFSRAY 311 Query: 265 VREFGCTPGEYRE 277 R FG P R+ Sbjct: 312 KRVFGVPPLR-RK 323 >UniRef50_A3Y9X7 Transcriptional regulator, araC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9X7_9GAMM Length = 310 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 113/311 (36%), Gaps = 33/311 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI-F 59 MDAL+ +L + W + E S +H + +G+ L + + Sbjct: 1 MDALTDVLKTLRLNTQTYFCSDFHAPWGIVM--DEASEGMFHVVIEGSCFLNIEQSQTII 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNEST------------------------------CIVC 89 L G++V P AH +S + ++C Sbjct: 59 ALNQGDIVAFPSGGAHWISDHQDSPKMPSHFVVDKIRSGESPFKERAKHLNKEIKNTLMC 118 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G+ ++ + E W+ E + L +ESR+ PG + ++ Sbjct: 119 GSFSYDTKMKHPFIRDLPCFIHIKSEQNNEQRWMSELVATLSRESRTPSPGSSLMLDRLT 178 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 F +R ++A + N L+ L ++G + + WT+E L MSR++ Sbjct: 179 EVLFIQIIRYFLASQPNKHNYLAALNDQQIGTTLNLIHAEESAHWTIEKLGEEVAMSRSA 238 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F F + G P L R+Q A + IAE GY+SE++F KAF F Sbjct: 239 FTDKFSKLVGQAPKTYLLNWRMQKAKTRLESTDDSMYQIAEDAGYSSEAAFSKAFKAFFA 298 Query: 270 CTPGEYRERVR 280 TPG R + Sbjct: 299 ETPGFVRRASK 309 >UniRef50_B2IIY8 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=B2IIY8_BEII9 Length = 313 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 121/308 (39%), Gaps = 29/308 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L L + + G DW + G + I++HA+ G+ + + Sbjct: 1 MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHD--GIKFHAVVTGSCWISVEGDAFTR 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVC------------------------GTLRLQH 96 + G LLP+ R++ + V G L Sbjct: 59 VNTGECFLLPRGRPFRIASDPSVEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLSE 118 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 L + L + LR + ++QE PG + Q+ A Sbjct: 119 GQSELLLN--VLPPLLHIRDEPGSATLRWCVERMRQELAEGQPGDFIVAQQLATIVLVQA 176 Query: 157 VREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R +++ TE L L RL A I M P WT+ +LAS+A MSR +FA FR Sbjct: 177 LRLYLSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFR 236 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + G +P+ L R+ +AA+ + + IA VGY SE SF AF R G P E+ Sbjct: 237 EAVGLSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREF 296 Query: 276 RERVRQLA 283 +Q++ Sbjct: 297 SRLQKQIS 304 >UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=Cupriavidus RepID=Q46N37_RALEJ Length = 322 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 34/316 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS L+ L +P GT+D +C + W + + +H + G A + + ++ Sbjct: 1 MDSLSELVRLLSPSGTVDLHCRVAGAWSAHNAQAPAGHMPYHVILDGRADVTI-GKDVLP 59 Query: 61 LRPGNVVLLPQNSAHRLSH----------------------------VDNESTCIVCGTL 92 + G+V+L P+ +AH L+ + I+CGT Sbjct: 60 VSAGDVLLFPRGAAHTLASAQRTRRSGPPRGTASQRFNGVVTEITVPGADAPLDILCGTF 119 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSV-----EYNWLREAIPFLQQESRSAMPGVDALCSQ 147 L A L +LPE L + S + WLR I + E+ + PG A+ + Sbjct: 120 ALGGGAGILLRALPEMLCVPTAGPSPGEGGHDAGWLRGLIGMMHAEAETPRPGGAAIIAD 179 Query: 148 ICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 + FT+ +R I++ + +L+LL R+ + ++ P WT+ESLA A++SR Sbjct: 180 LSTALFTVLLRTLISRGTVTRGVLALLADTRMAKAVDAVVGSPERPWTIESLAQSANVSR 239 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 A+ A+ F + G TPL ++T LR++ AA++ ++ L +AE GYAS+++F +AF + Sbjct: 240 ATLARRFTQLGGITPLELVTTLRMERAARLLQQDNLSAAAVAERCGYASQAAFGRAFSGQ 299 Query: 268 FGCTPGEYRERVRQLA 283 FG PG YR + R L Sbjct: 300 FGVGPGAYRRQQRALR 315 >UniRef50_B2HZJ1 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HZJ1_ACIBC Length = 321 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 33/310 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS+ + +W + S + + + G+ +++ E T Sbjct: 7 MDALSKFFDDIHLNKSEYIYIKAQGEWA--FKTQDQSALLAYIVLTGSVYIQLNVSEKIT 64 Query: 61 LRPGNVVLLPQNSAHR------------------------------LSHVDNESTCIVCG 90 R G+++L+P AH L +E+T ++C Sbjct: 65 ARAGDIILIPSGKAHHATDSKATASKLVDPVDITPLFNGHRHDPIELGSSTSENTLLLCL 124 Query: 91 TLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 ++ A + +LP + + N + WL+ + FL E++ PG D + + Sbjct: 125 RCQVDTYMAGPLINALPSIMHIQHENQATPPEWLQIGLYFLAVETQKIQPGHDKIIDHLV 184 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 + +R+ I Q++ ++N L L HP L + + P +WTVESLA MSR+ Sbjct: 185 SILLIECIRDHIQQMSDQQNWLGALTHPELSNALSAIHSQPEISWTVESLAEQCCMSRSK 244 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 FA LF + G PL L R ++A+Q L + I+ VGY+SE++F +AF R F Sbjct: 245 FANLFNSIIGEPPLTYLQHYRFRLASQYLRTSNLSIQQISNKVGYSSETAFSQAFKRVFD 304 Query: 270 CTPGEYRERV 279 +P +YR+ Sbjct: 305 LSPKQYRQNY 314 >UniRef50_A0L3B8 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=A0L3B8_SHESA Length = 311 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 134/307 (43%), Gaps = 32/307 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + DW + E ++ R+H +T G E+P ++ Sbjct: 1 MDVLSEILDKVELTSSYWYRTSFAGDWGISLPQEE-NLARFHIVTHGEFWYEVPKLKLKA 59 Query: 61 LRP-GNVVLLPQNSAHRLSHVD------------------------NESTCI----VCGT 91 L G++++ + H ++ + + + VCG Sbjct: 60 LAEQGDILIFFKGMEHTMASAPKIKAEPAVEFRAKANLTEAQVLEYGDQSKLKANVVCGH 119 Query: 92 LRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA 150 + FL SLP + + ++S WL + ++QE++S +PG + L ++ Sbjct: 120 FCFNGGPDHPFLNSLPNVVHIKSADNS-HSPWLAMLLSIIEQEAKSGLPGSNTLVRKLTE 178 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F A+R + + N L+ +P+L ++ + W ++ LA IA MSR ++ Sbjct: 179 IIFVQALRIHMYKSNKNAGFFKLIENPQLSKTLEAIHHSLDKKWGLDDLAGIAGMSRTNY 238 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F+++SG TPL LT RL+ A Q+ V ++E++GY + F K F ++ G Sbjct: 239 SVKFKELSGMTPLDYLTYCRLEKAKQLLKESGKSVPEVSEAIGYPAHEHFQKLFKKKIGK 298 Query: 271 TPGEYRE 277 TP YR+ Sbjct: 299 TPSAYRK 305 >UniRef50_A8M1A6 Transcriptional regulator, AraC family n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M1A6_SALAI Length = 317 Score = 246 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 118/308 (38%), Gaps = 31/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L +L L ++ + W + A + +HA+ G L + + L Sbjct: 4 DVLGDVLALARVDASLLATFDARAPWAIELPARQ--GASFHAVVAGTCWLTVEDMQPRQL 61 Query: 62 RPGNVVLLPQNSAHRLS---------------------------HVDNESTCIVCGTLRL 94 PG++VL+P H S H T I+C Sbjct: 62 APGDLVLMPTGVRHEFSTDLNLPTRRFDDDLKRSLIQPDGDLMLHGPGARTRILCAGYSY 121 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + + + SL + WLR + L E+ SA G D ++ Sbjct: 122 EAHGAHPVLSLLPPVLHVATAQPENGPWLRAVLDLLAHETGSAATGSDTAAVRLLDLLLI 181 Query: 155 LAVREWIAQVNTEKN--ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W+ L L P G + + E P WT+E+LA ++SRA+ A+ Sbjct: 182 HVIRVWLHTGGDTVGVSWLRGLHDPVSGRALAVLHEQPSLNWTLEALAEAVNVSRATLAR 241 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F G PL L++ RL +AA +LPV IA +GY SE +F++AF R G P Sbjct: 242 RFTRHVGEPPLRYLSRWRLSLAAHKLRNTSLPVAAIARDIGYTSEFAFNRAFARAHGHPP 301 Query: 273 GEYRERVR 280 G YR R Sbjct: 302 GRYRRSAR 309 >UniRef50_B5WHE2 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WHE2_9BURK Length = 321 Score = 246 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 120/307 (39%), Gaps = 32/307 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 MD LS +L L + + DW + GA + I++HA+ +G + + + Sbjct: 1 MDPLSEVLSLVKLRSYLSGGFDANGDWAVQFGAHD--GIKFHAVLRGQCWVLVEGVPDPV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRL- 94 + G LL + RL+ + G L Sbjct: 59 KVSEGECFLLARGKPFRLASDLAVEPVDVRTLLPQVHDGRVVTYNGGGEFLSIGGYFTLA 118 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 A L+ LP + + +R + ++ E A PG + Q+ Sbjct: 119 DGPADLLLSMLPPLVHVR---EEPNRATVRWYVERMRHELSDAQPGDFIVARQLATLVLI 175 Query: 155 LAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R ++ E L L R+ A I M PG WT++S+A A MSR +FA Sbjct: 176 EALRLHLSNERRESVGWLFALSDKRMRAAIDAMHASPGRRWTLQSMAEQAAMSRTTFALR 235 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F++ G +P+ LT+ R+ +AA + V I ++GY SE SF AF R C+P Sbjct: 236 FKETVGLSPMEYLTRWRMMLAADRLTHSRDSVSEIGLALGYESEKSFSTAFKRVMNCSPR 295 Query: 274 EYRERVR 280 Y + + Sbjct: 296 RYARQRK 302 >UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JN73_RHOER Length = 379 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 7/279 (2%) Query: 4 LSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRP 63 LS +L + +G CV G ++ + AG + H G + L P Sbjct: 99 LSHVLEVVHLRGDQIHRCVHGENFTVDVPAGVRA---LHIAEHGDIVIRTQGKAPIELGP 155 Query: 64 GNVVLLPQNSAHRLSHV----DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVE 119 G +VLLP AH + + TC + GT L A L S+ Sbjct: 156 GELVLLPHGHAHTIENAMPMHPKNETCWLFGTFTLDDVAAQRLLSVLPDFVELRATQGTP 215 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 WL + L E PG + S+I F +R W + L+ + PR+ Sbjct: 216 VEWLDVSSRLLGAEVDDPKPGSSVMVSRILDLLFVQILRAWARADGSNGGWLTAAMDPRI 275 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 G ++ + P WT++ LA+++ +SR+SFA+ F + G TP A +T+ RL AA++ Sbjct: 276 GQALEAVHNDPSRNWTIDELATLSTLSRSSFAERFSRLVGQTPGAYITERRLDRAAELLV 335 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 + T PV IA +VGY S+++F +AF R F +P +R+ Sbjct: 336 QTTEPVGTIAITVGYESDAAFSRAFRRRFDASPLNWRKS 374 >UniRef50_B5JV28 Transcriptional regulator n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV28_9GAMM Length = 314 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 120/313 (38%), Gaps = 35/313 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL G K L W++ V +H +TQG L Sbjct: 1 MDTLSLLLNDIRLSGARFKRAELQPPWKMHLHT--PGVASFHVVTQGQCILVRGQEAPLE 58 Query: 61 LRPGNVVLLPQNSAHRLSHV--------------------------------DNESTCIV 88 + G+VV+LP+ AH L+ + +V Sbjct: 59 VHTGDVVILPRGPAHDLADSAGSLQAASAIDLKQHLDSEQSGGVQTLYNISHPQSADHMV 118 Query: 89 CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 G L S L S +WL + FL E + A+ ++I Sbjct: 119 SGYFEFDSDLARPLFSALPDLIHYRAMDSETPDWLHFGMMFLNTEIAAQRSAQQAIINRI 178 Query: 149 CATFFTLAVREWIAQVNTEKN-ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 +R+++ + L L P L A + M P W+V LA IA +SR Sbjct: 179 ADILLIECLRDYVDNLPEGSGNWLLALKDPALSAALSAMHSQPDKQWSVPQLADIACLSR 238 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 +SFA F V G PL+ LT R+++AA P+ IAE VGY S+++F +AF R Sbjct: 239 SSFANRFGKVLGEPPLSYLTAHRMRLAAWQLRNSNQPICHIAEQVGYQSDAAFSQAFRRI 298 Query: 268 FGCTPGEYRERVR 280 C+P YRE R Sbjct: 299 HDCSPSRYREHSR 311 >UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC type n=9 Tax=Bacteria RepID=A7HAQ8_ANADF Length = 356 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 44/324 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGEL----------SVIRWHALTQGAAKL 51 D LS +L G + + S W VI +HA+T+G Sbjct: 27 DPLSDVLQSVRLSGAVFFHIEGSSPWVAEAPPSRAVAGIFMPRAQHVIEYHAVTRGGCWG 86 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN----------------------------- 82 + L G+V++ PQ AH LS Sbjct: 87 GIVGERPARLDAGDVIVFPQGDAHVLSSEPGLRAPPDLATYASLLDGPPPVHIPLGGGGA 146 Query: 83 ESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 + I+CG L L +LP L + L + +E+R PG Sbjct: 147 DRAEILCGFLGCDARPFNPLLATLPRVLHARLADARGSA--LETFMEAALRETRERRPGG 204 Query: 142 DALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 +++ +++ F VR ++A + L+ L +G + + P H WT++ LA Sbjct: 205 ESVLARLSELMFVEVVRSYLAALPAGNTGWLAGLRDEFVGRALALLHGRPAHPWTLDELA 264 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 +SR++ A+ F + G P+ L R+Q+AA + ++ V +A VGYAS+++F Sbjct: 265 RKVALSRSALAERFTQLVGRPPMQYLAGWRMQLAAGLLLGDSAGVSQVAAEVGYASDAAF 324 Query: 261 HKAFVREFGCTPGEYRERVRQLAP 284 +AF + G P +R R P Sbjct: 325 SRAFKKAVGVPPAAWRRS-RSAKP 347 >UniRef50_D1V7I4 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D1V7I4_9ACTO Length = 308 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 86/306 (28%), Positives = 127/306 (41%), Gaps = 37/306 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L T+ + W L G + +H + QG L + Sbjct: 1 MDVLTDVLAALETGPTLCARTRAHAPWGLRFGGNQ--GFGFHVVLQGTCWLSSGDDQPRA 58 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 LR G+VVLL + H L+ T ++ G Sbjct: 59 LRAGDVVLLAGGTEHTLADAPTTPAVTFRLDRERQSTRIGHEHVAGVAGGARTVLLSGAY 118 Query: 93 RLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 RL+ L +LP+ + L + L A+ L E PG +A+ S + Sbjct: 119 RLEKRRPHPLLATLPDVVHLPNRRRNG----LHAAVDLLGAEVEEQEPGAEAIVSSLVGA 174 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R W Q + L P +G + +M P WTVE L + A +SRA+F Sbjct: 175 LLVYILRAW--QEDHPSGWSRALADPAVGPSLHRMHRDPARPWTVEQLGAAAGVSRATFT 232 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G PL LT+ RL AA+M ++ +P+ V+A SVGY SE +F KAF RE+G Sbjct: 233 RRFTALVGEPPLTYLTRWRLTSAARMLRQQDVPLSVVAHSVGYTSEFAFAKAFKREYGLA 292 Query: 272 PGEYRE 277 PG YR Sbjct: 293 PGTYRR 298 >UniRef50_B9XHR2 Transcriptional regulator, AraC family n=1 Tax=bacterium Ellin514 RepID=B9XHR2_9BACT Length = 326 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 127/317 (40%), Gaps = 37/317 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ ++ L + L + + + I + +G+ L + + Sbjct: 1 MDVLADIMSLLRTSTHLYGKLDLSAPFGFKFPGEKGICI---IVLRGSCFLGVDKESLVP 57 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 L G+ VLLP + L T +V G Sbjct: 58 LVGGDFVLLPAPKFYSLRSSPKLPLRPVEQITSEKEFHRTRLISFDGGEGPPTTLVAGCF 117 Query: 93 RLQHSARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 L LP + L + W + F+ E+ +PG A+ ++ Sbjct: 118 TFSSPESELLVKHLPPIIHLQASGNRAT-PWFHSTLQFIAAEAAQNLPGGTAIVDRLAEV 176 Query: 152 FFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F LA+R + + L L P++G ++QM PG WTV LA MSR+SF Sbjct: 177 LFVLAMRTRTDSFSSANPSWLRALTDPQIGEALRQMHAEPGRPWTVSDLARTVSMSRSSF 236 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET-LPVVVIAESVGYASESSFHKAFVREFG 269 A FR++ G TPL LT+ R+ AA M + + IA +VGY SESSF K F R G Sbjct: 237 ADRFRELVGETPLGHLTQWRMVRAANMMCSNRPMKMAAIASAVGYESESSFGKVFRRVMG 296 Query: 270 CTPGEYR--ERVRQLAP 284 +PG+YR +++ Q P Sbjct: 297 ISPGKYRLTKQIDQSTP 313 >UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RUT1_9PROT Length = 346 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 55/331 (16%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGE----------LSVIRWHALTQGAAKL 51 D LS +L +G + G DW A V+ +H + +G+ Sbjct: 4 DPLSDVLSSVRLRGAVFYYVSFGDDWAAETPASRQLADALMPGAEHVLAYHLIARGSGWA 63 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN----------------------------- 82 + L G++V+ P+ +H LS Sbjct: 64 ATASEPPVRLNSGDIVMFPRGDSHVLSSAPGLRAQPDNDDWRVTTRNDPKPIAVAYHRGV 123 Query: 83 -----------ESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFL 130 ST +VCG + + +LP L L W+ + Sbjct: 124 LRPGAPLPADEASTVVVCGFVGCDLRPFNPLINALPRLLHL---GAGGVGAWVAPVLDQA 180 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEM 189 ESR G A+ ++ F A R + + + L+ L +G I + Sbjct: 181 VSESRQCRAGSAAVLERVSEMVFVDAARRHLESLPADASGWLAGLRDRHIGKAIGLLHAR 240 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 P WT++ L +SR++ Q F ++ G P+ LT R+Q A + V IA Sbjct: 241 PAEPWTIDELGRQIGLSRSALHQRFVELVGQPPMQYLTNWRMQRGACLLREGDATVATIA 300 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + VGY SE++F +AF R G P +R R Sbjct: 301 QEVGYDSEAAFARAFKRLAGTPPAAWRRAQR 331 >UniRef50_Q09DL8 Transcriptional regulator, AraC family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09DL8_STIAU Length = 755 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 122/302 (40%), Gaps = 30/302 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D L+ +L + L + W + GE + +++G A LE G T Sbjct: 428 DVLAEVLDSMRLSTLVYGRFDLHAPWGIQFPDGEAA--HIVVVSRGGALLEFEGSGAPLT 485 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC---------------------------IVCGTLR 93 L G++ LLP ++ L + +V G + Sbjct: 486 LSAGDLALLPHGGSYCLRDAEGSPIHVMEGGACQRALALGAPLRLGGQGARSTLVTGAFQ 545 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + R L + + S+ L A+ L ES S PG + S++ Sbjct: 546 FGAAPRTLLFEKLPRVIHVAADSSMAAPSLASAVQLLIAESTSTRPGTTVVMSRLADILL 605 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R IA + + L L P++G + + E P +WTVESLA+ +SR+ FA Sbjct: 606 VQAIRTHIAAGGCQNHGLCALADPQIGKALALIHERPAESWTVESLAAAVALSRSGFAAR 665 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F + G PL L + R+ AAQ+ L + +A GY SE+SF++AF R G PG Sbjct: 666 FSSLVGDPPLEYLARWRMTKAAQLLRESNLSLSEVAAHAGYHSEASFNRAFKRWEGVAPG 725 Query: 274 EY 275 Y Sbjct: 726 AY 727 >UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=D1TH46_9BURK Length = 347 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 128/326 (39%), Gaps = 43/326 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL----------PHGAGELSVIRWHALTQGAAK 50 MDA+S +L G + N + W L + VI +H + +G+ Sbjct: 1 MDAVSDVLRAVRLSGAVFLNGTFTAPWCLIGRTDASLCGAYLPPSERVISYHLIIEGSCW 60 Query: 51 LEMPT--GEIFTLRPGNVVLLPQNSAHRLSH----------------------------- 79 ++ G + G ++++PQ H + Sbjct: 61 AKLAGDPGSAIHVHAGELIVVPQGETHIMGSAIDLSPVPSDSLLAGQMATAPGEVMTLSH 120 Query: 80 -VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAM 138 T IVCG L + L S LF + WL ++ E+ + Sbjct: 121 GGGGAVTRIVCGFLACDDTLNNPLLSALPRLFKIDMRQDPRAAWLESSLKLAAAEAAESR 180 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVE 197 G + +++ F A+R I + + L+ + +G + + HAWTVE Sbjct: 181 AGGTIVLARLSELLFVEAIRSCIEALPENQTGWLAGVRDRYVGRALSLLHSQAAHAWTVE 240 Query: 198 SLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASE 257 LA +SR++ AQ F D+ G P+ L + R+QIAA + P+ +AE +GY SE Sbjct: 241 ELARKVGLSRSALAQRFTDLLGQPPMQYLARWRMQIAAHELRIGSKPLNAVAEQIGYESE 300 Query: 258 SSFHKAFVREFGCTPGEYRERVRQLA 283 ++F +AF REFG P +R+ Q Sbjct: 301 AAFSRAFRREFGMPPAGWRKSKGQAD 326 >UniRef50_A9WHL1 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Chloroflexus RepID=A9WHL1_CHLAA Length = 329 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 77/309 (24%), Positives = 122/309 (39%), Gaps = 33/309 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 MD L+ +L L + ++ LGS W L + +V +H L +G + E Sbjct: 1 MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAV--FHVLHRGNGFFRVAGTPEWT 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDN-----------------------ESTCIVCGTLRLQH 96 LR G+++LLP H L + S ++CGT ++ Sbjct: 59 PLREGDLLLLPHGQEHLLLETPDTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEY 118 Query: 97 -SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A LP+ + + L + + E+ S P + + ++ F Sbjct: 119 VHAASLFRYLPDVIHIPYHAARP----LNRVLELMADEAESQRPAKEVVLRRLADILFVQ 174 Query: 156 AVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 V+ W+ L P +G + M P W V SLA SR++FA F Sbjct: 175 IVQYWVEMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAARF 234 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMF-SRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 + G P+ LT+ R+QIA+++ +L V +A VGY SE++F KAF R G P Sbjct: 235 TALVGEPPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAPT 294 Query: 274 EYRERVRQL 282 YR Sbjct: 295 AYRSAAGHR 303 >UniRef50_B6R353 Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R353_9RHOB Length = 314 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 105/305 (34%), Gaps = 29/305 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS + D+ + + IR+H + +G+ L M L Sbjct: 7 DILSEIFTGLQISSDTYFRTHFAGDFSIAIPTEQR-RIRFHLVLRGSCWLCMEGEPPVFL 65 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTC--------------------------IVCGTLRLQ 95 G+V L+P +A + + ++CG + Sbjct: 66 EEGDVALIPNGAAQMIKSDPALPSVGLGELLTGGALRDGCLHVGEGADTNSLLCGFCQFD 125 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + + S + WL + + E+ G A+ +++ T Sbjct: 126 EELDHPILSSLPASLRLRLQDLGSEPWLAATLKLIALEANFNGQGSSAILNRLIETIVIQ 185 Query: 156 AVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 + R A+ + + ++ L L I + P W V LA IA MSRASFA+ Sbjct: 186 STRTLSARPSEDAQAGFIAALGDKSLSRAITEFHRAPEQNWQVTDLAEIAGMSRASFARH 245 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F G P+ + RL A + + L IA GY S SF K F + FG PG Sbjct: 246 FIRHVGKPPMEYVRDWRLMRARSLLTDTNLSSEEIATRCGYNSLPSFSKLFKKRFGMGPG 305 Query: 274 EYRER 278 +R Sbjct: 306 TFRRN 310 >UniRef50_A7HFH7 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFH7_ANADF Length = 327 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 117/301 (38%), Gaps = 34/301 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS +L L + + + +R+H + +G + E L Sbjct: 23 DLLSEVLQDLRLAQASYGRSELTAPFGIEIP--FKEGVRFHFVVEGGCWILSAAREPIRL 80 Query: 62 RPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTLRL 94 G+VVLLP +AH ++ + IVC T+ Sbjct: 81 DAGDVVLLPHGTAHVMADRPGRRPLPLAEVAPHLIGNASYRIAHGGGGPRSLIVCCTIAF 140 Query: 95 QHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 A L LP L + L + + + E G + +++ Sbjct: 141 DGPTANPLLEMLPPVLLVR--RAETRDPMLSQLLEMMAGEVMERRIGSVTIMARLADIVM 198 Query: 154 TLAVREWIAQVNTE--KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 T +R WI L+ + P++G + ++ PGH WTVE+LA+ A MSR+SFA Sbjct: 199 TSIIRSWIEGQGDSNVSGWLAGVRDPQIGLALARIHRNPGHPWTVETLAAAAGMSRSSFA 258 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 Q F + +P L + R+++AA ++ V A VGY S++ F +AF R G Sbjct: 259 QRFVQLLNVSPARYLLQWRMRLAATWLRSGSMTVAEAAAQVGYDSDAGFSRAFKRAMGLP 318 Query: 272 P 272 P Sbjct: 319 P 319 >UniRef50_A7HS46 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Alphaproteobacteria RepID=A7HS46_PARL1 Length = 324 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 40/323 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQL----------PHGAGELSVIRWHALTQGAAK 50 MD LS +L G I + W + P G ++I +H + +G Sbjct: 1 MDPLSDVLRSMRLTGGIFLEAEFTAPWSIVSRVEPEDCAPFGYVPRNLIAYHYVEEGELL 60 Query: 51 LEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN---------------------------E 83 L++ G ++LLPQN H L+ Sbjct: 61 LQLDGQPDLKAGRGEILLLPQNHPHILASGPGIAAAHSHDLVLPAPDGGLARIVHGGGGA 120 Query: 84 STCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T IVCG L + L+ LP L L V W+ F Sbjct: 121 RTRIVCGFLGNETPGDTLLSFLPPVLRL-DVPEDHTGQWIESTFRFASVALAGGGDRSAV 179 Query: 144 LCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + ++ F AV +A + EK L+ L P +G + + WT ++LA+ Sbjct: 180 VLGRLAELLFEEAVHRHVASLPEGEKGWLAGLRDPVIGRALALLHGRLDRPWTTDALAAE 239 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 +SR++FA F + G P+ L K R+Q+AA+ S V IA GY SE++F++ Sbjct: 240 VGLSRSAFASRFTALVGDPPMRYLGKWRMQLAARRLSDTPDSVARIAFDAGYESEAAFNR 299 Query: 263 AFVREFGCTPGEYRE-RVRQLAP 284 AF R FG P +R+ RQ P Sbjct: 300 AFKRSFGSPPATWRKENTRQGDP 322 >UniRef50_C1RHR4 DNA-binding domain-containing protein, AraC-type n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RHR4_9CELL Length = 335 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 116/311 (37%), Gaps = 33/311 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + L G W + A + +H +T G + +P + L Sbjct: 25 DLVGESLHRLRVAGVFYCRTEAAGVWSVDMPAFG-DCLTFHVVTAGEVHVAVPGADPVLL 83 Query: 62 RPGNVVLLPQNSAHRL----------------------------SHVDNESTCIVCGTLR 93 R G++ L+P H L D ++CG L Sbjct: 84 RAGDLALVPHGRGHVLASDLAAPSLGRVDLLPQDYLTETYSVLRHDGDGPRASLLCGVLS 143 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + A L L + P W+ + + E PG +A+ +++ Sbjct: 144 VDGPAARPLLDLLPAVVDVP---GESAPWVSRTLELMTAELAHLRPGGEAVLTRLADVVV 200 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 AVR W+ + L L P +GA + + P H WT+ +LA ++ MSR++FA Sbjct: 201 IQAVRAWLDAQDPATGWLGGLRDPYVGAALAAVHRDPAHPWTLAALARVSAMSRSAFAAR 260 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F V G + +T R+++A +R + +A +VGY S + F + F R G +PG Sbjct: 261 FTQVVGVPVMQYVTSWRMRVATDRLARGDA-LAHVATAVGYESTAGFSRTFSRVTGRSPG 319 Query: 274 EYRERVRQLAP 284 R L P Sbjct: 320 SVRRIAGSLGP 330 >UniRef50_D1BRX4 Transcriptional regulator, AraC family n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BRX4_XYLCX Length = 324 Score = 239 bits (610), Expect = 9e-62, Method: Composition-based stats. Identities = 81/304 (26%), Positives = 127/304 (41%), Gaps = 33/304 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D S L G + W + A + + +H LT G A + + G++ L Sbjct: 3 DPWSDALGDLELTGVFYATARMTEPWGIDLPALPWTAM-FHLLTAGRAVVSV-DGDVHEL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNEST---------------------------CIVCGTLRL 94 PG ++L+P + H++ + +VCG + Sbjct: 61 VPGELLLVPHGTGHQILSAPDAPASGLWGIEREVVGERYERLVVDGGGAPARLVCGAVTF 120 Query: 95 -QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 L SLP + + +WLR A+ + E+ G D + +++ Sbjct: 121 ADPGVGRLLASLPAVVR---AHGGETGSWLRAAVDAIAHEAEHPRGGSDVVTARLADVIL 177 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 AVR+W+ L+ L LG V+ + P WT+ESLA++AH+SR++FA+ Sbjct: 178 VQAVRDWLDDAEPPSGWLAALRDDVLGPVLAAVHTDPARPWTLESLAALAHLSRSAFAER 237 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F V G P A + RL +AA+M V +AE VGY S FH+AF R G TPG Sbjct: 238 FAAVVGEPPAAYVAGWRLGLAARMLCEPGASVAAVAERVGYDSVPGFHRAFTRRHGMTPG 297 Query: 274 EYRE 277 +R Sbjct: 298 AWRR 301 >UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI96_CATAD Length = 315 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 81/294 (27%), Positives = 119/294 (40%), Gaps = 19/294 (6%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIF-T 60 D LS LL G + + H + +G L + Sbjct: 22 DLLSELLRSVRLTGERIVAYTPSPLFSVEF----ADRGSLHIVEEGEVTLRIEGSPHVEH 77 Query: 61 LRPGNVVLLPQNSAHRLSHV-----------DNESTCIVCGTLRL-QHSARYFLTSLPET 108 L G+ VLLP+ AH +S D +CGT + A + L SLP Sbjct: 78 LCAGDFVLLPRGDAHSISDAGLGGSPAGGDADRRPARWLCGTFTIGDPQASHLLGSLPAV 137 Query: 109 LFLAPVNHS--VEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT 166 + L L A + E +S G + ++I F +R W A + Sbjct: 138 IILRGSGGPDLEALEGLEVARRMIVLEMQSPSQGSAVMVARILDLIFIQIMRTWAAGADV 197 Query: 167 EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVL 226 E N L+ P++G + + PG WTVE LA ++SR+SFA F + G P L Sbjct: 198 EPNWLAGAFDPQIGLALSAIHRDPGREWTVEELARACNLSRSSFAARFVERVGKPPATYL 257 Query: 227 TKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +RL A + LPV +AE+VGYASE++F +AF +G P +R +R Sbjct: 258 AHVRLDAATTLLRDTFLPVTQVAETVGYASEAAFSRAFKNRYGTPPARWRRDIR 311 >UniRef50_Q01Y24 Transcriptional regulator, AraC family n=2 Tax=Acidobacteria RepID=Q01Y24_SOLUE Length = 335 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 41/316 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHG-------------AGELSVIRWHALTQGA 48 D ++ + + W L + + L++G Sbjct: 6 DPITDIFRTMHVTAFGQHRLEATAPWGLMQEKRTEEKLTPSGQIDSPTDLAHYAMLSRGN 65 Query: 49 AKLEMPTG-EIFTLRPGNVVLLPQNSAHRLSHVD-------------------------N 82 L + + L G+ L+ ++++ + Sbjct: 66 CWLSVGGIPDPIPLTGGDCFLVDRDTSIVMRDSPRTRPRSTFGEVAAKADGNVAHHGGGG 125 Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 T IVCG++ ++ +T L + L + L + + L E PG + Sbjct: 126 APTTIVCGSMSFDRASLRPITQLLPSFILIRAEQARTLA-LHDTMRALSSEMAEQAPGSE 184 Query: 143 ALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + +++ F +R IA K L + P++G + + + WTVESLA Sbjct: 185 IVANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVESLAE 244 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 A MSR++FA F+++ G TPL +T+ R+Q A Q+ + ++ +A SVGY S ++F Sbjct: 245 AAGMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESGAAFS 304 Query: 262 KAFVREFGCTPGEYRE 277 KAF R G PGEY + Sbjct: 305 KAFKRVVGINPGEYLK 320 >UniRef50_B1M711 Transcriptional regulator, AraC family n=4 Tax=Rhizobiales RepID=B1M711_METRJ Length = 327 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 33/304 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L GT+ + LG W L ++ +H ++ G+A L + F Sbjct: 14 MDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYAL--FHYVSHGSATLALDQEREFH 71 Query: 61 LRPGNVVLLPQNSAHRLSHVDNEST--------------------------CIVCGTLRL 94 + G++V++ + H ++CG + Sbjct: 72 MSAGDLVVISRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPPCSTMICGKFTV 131 Query: 95 -QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 Q S L LP L L WL + + ES PG D + S++ F Sbjct: 132 AQPSRSSLLELLPPVLHLKSTEDGA---WLELILRRMVHESAQPRPGQDVVLSRLTEVLF 188 Query: 154 TLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W+ E L + P +G ++ + + +WT++ L + R++F+ Sbjct: 189 VEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVGLGRSAFSA 248 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G + L R+ AA + + IA VGY S ++F K F R G +P Sbjct: 249 RFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLFHRHHGLSP 308 Query: 273 GEYR 276 G YR Sbjct: 309 GRYR 312 >UniRef50_A6UH43 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Proteobacteria RepID=A6UH43_SINMW Length = 329 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 80/304 (26%), Positives = 131/304 (43%), Gaps = 34/304 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ LL G C L + W + A E + + G L + G+ L Sbjct: 15 DFLTELLRGLRLDGVDYVRCELTAPWGISFPAQETARFHFIC---GDCWLRVADGDWIEL 71 Query: 62 RPGNVVLLPQNSAHRLSHVDNE---------------------------STCIVCGTLRL 94 + G+ VLLP+ H L+ + E +T + CG+LR Sbjct: 72 KRGDAVLLPRGGEHALASMPGEKLAPLDAYSVQEVCHCVYNVCGGGRGETTILFCGSLRF 131 Query: 95 QHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 + + L +P+ + + + S + + + +E ++ G + +++ Sbjct: 132 NMDSMHPLLRMMPDVMRINALTASE--PAIPHMLDAMAREVGASRVGSGGVLARLADVLA 189 Query: 154 TLAVREWIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 L +R W+ ++ + HP LG VI M P AWTV+SLA + SR+ FAQ Sbjct: 190 ALIIRSWVEHGCGNTSGWVAAVRHPGLGRVIAAMHLDPEKAWTVDSLARLMGASRSGFAQ 249 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F V G TP L ++R+ A Q +R+ + + V+A +GY SE+SF +AF R G P Sbjct: 250 QFASVVGETPARYLAQVRMHQARQWLTRDRMRISVVARRLGYDSEASFSRAFKRVIGQPP 309 Query: 273 GEYR 276 YR Sbjct: 310 SHYR 313 >UniRef50_Q0K088 Transcriptional regulator (Transcriptional regulator, arac-family) n=4 Tax=Proteobacteria RepID=Q0K088_RALEH Length = 310 Score = 237 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 114/304 (37%), Gaps = 35/304 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS ++ L P+ K+ W + + + + A+ +G+ +L + TL Sbjct: 15 DPLSEVISLLQPRAVFSKSISGAGRWGVRY--ADFGQPSFCAVLEGSCRLAVDGQHALTL 72 Query: 62 RPGNVVLLPQ--------------------------NSAHRLSHVDNESTCIVCGTLRLQ 95 G+ VLLP ++ G Sbjct: 73 ETGDFVLLPATPGFTLSGFEPVAPERIDPKVTPAPMGEVRHGRRGGRPDVRLLGGYFVFD 132 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 S L SL L H L + + +ES G + + +++ Sbjct: 133 SSNAALLVSLLPALV-----HVRGAERLSAIVRLVSEESGERRSGRELVLTRLVEVLLIE 187 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 A+R + + +L L RL + ++QM P +WTV LA A +SR++F + F Sbjct: 188 ALRS-TSGEDAPPGLLRGLTDTRLASAMRQMHADPARSWTVAQLARKAALSRSTFFERFT 246 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G P+ L R+ +A + R + + +AE VGY S ++F AF R G P Y Sbjct: 247 RAVGMPPMEYLIAWRMAVAKDLLRRHDIGIAEVAERVGYGSATTFSTAFSRHVGQPPSLY 306 Query: 276 -RER 278 R+R Sbjct: 307 ARKR 310 >UniRef50_B9JLR2 Transcriptional regulator protein n=2 Tax=Rhizobiales RepID=B9JLR2_AGRRK Length = 328 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 31/299 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS++L L +G + + LG+ W L E H +++G +L G+ Sbjct: 27 DFLSQILTLIRLRGELICSAELGAPWGLTF---EPGSGYLHVVSEGELRLTASDGKTVYA 83 Query: 62 RPGNVVLLPQNSAHRLSHVDNES--------------------------TCIVCGTLRLQ 95 R G+++++PQ + H + E T +V G R + Sbjct: 84 RAGDLLIMPQGTGHVIGTPGAEPVEARGLLKAQLRDDNLAVRIQGGGPVTHLVTGAFRFE 143 Query: 96 HSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 L LP + + + E WL L E+R+A PG + S++ Sbjct: 144 GDNMPSMLAVLPSVIHIQGSMDADEKGWLEVLAQSLLSEARAAHPGSAIMISRLIDVLVI 203 Query: 155 LAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R W+ E+ L+ L R+ ++ + + P TV LA++A MSR++FA+ Sbjct: 204 RAMRIWVRTAPPEEKGWLAALADARISRALKAIHDEPFRRRTVAELAAMAGMSRSNFAER 263 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G PL T+ RL +A+ M R V +A VGY SE++F +AF +FG P Sbjct: 264 FSTLVGAGPLHYQTRWRLLLASDMLRRSDARVSDVARRVGYDSEAAFSRAFKAQFGIPP 322 >UniRef50_A7HC12 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC12_ANADF Length = 345 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 120/321 (37%), Gaps = 40/321 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHG----------AGELSVIRWHALTQGAAKL 51 D LS L + G + W + G + H L +G + Sbjct: 24 DVLSDALRVVRASGALLLRGEFTGSWAVATPDSSAIARIVCPGGARLAIMHLLAEGDCWI 83 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVD---------------------------NES 84 +P E L G +VL P+ AH L D E Sbjct: 84 ALPGRERVRLATGELVLFPRGDAHLLGSGDHAAVVPVSALLPPAPWTELPVLRHGGGGER 143 Query: 85 TCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 IVC LR FL LP L L + + W+ +I ++ ES PG A Sbjct: 144 ARIVCCYLRCDDLLFTPFLEPLPPVLHLR-ADGGSTHEWVSASIRYVIAESTRGGPGSGA 202 Query: 144 LCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 L ++ F A+R + + L+ L + +Q PG AWTVE +A Sbjct: 203 LVGKLTELLFIEALRREMCSLPETSVGWLAALRDEYVSRALQAFHARPGRAWTVEGVARE 262 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 A +SR++ F+ V TP+ LT RLQ+AA + V IA +VGY SE + Sbjct: 263 AGLSRSALVARFQRVLAKTPMQYLTTWRLQLAANRLLATSETVAAIAHAVGYGSEVALSH 322 Query: 263 AFVREFGCTPGEYRERVRQLA 283 AF R G +P +R R+ Sbjct: 323 AFKRVTGVSPAAWRRSHRRSG 343 >UniRef50_Q21H00 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21H00_SACD2 Length = 297 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 122/295 (41%), Gaps = 29/295 (9%) Query: 13 PQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLRPGNVVLLPQ 71 Q ++ + + W + A V R+H +G L + + L G++V++P Sbjct: 1 MQSSLYFRTEMSAPWGVAVPAKGK-VARFHIAIRGQCWLRVEGENKPLFLANGDLVIIPH 59 Query: 72 NSAHRLSH---------------------------VDNESTCIVCGTLRLQHSARYFLTS 104 +AH + +VCG + L Sbjct: 60 GAAHVMGDTQETAAKPLGDVLSETQYTGEGPLVYGGGGAGCTLVCGEFAFDERETHPLLD 119 Query: 105 LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV 164 ++ + WL + F+ E+ PG A+ ++ F A+R + Sbjct: 120 NLPSVLSITADQGHHAKWLDAVMGFVAHEAAQMRPGAHAIIHRLSDIIFIQAIRLLLDSS 179 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 LS R+ V+ ++ P H W+VESL IA+MSR++F+ F +++ +PL Sbjct: 180 PHNIPFLSAFADNRISMVLSRIHAEPQHKWSVESLGQIANMSRSAFSNRFSELTQMSPLQ 239 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + +RL A+++ + IAE +GY SE++F AF ++F C PGEYR+R Sbjct: 240 YVMFIRLNRASRLLIESDYSLGQIAELIGYQSEAAFSLAFSKQFDCRPGEYRKRA 294 >UniRef50_B1JWG2 Transcriptional regulator, AraC family n=13 Tax=Burkholderia RepID=B1JWG2_BURCC Length = 315 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 35/315 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS+LL L +D C+L + +PH +H + GA +L G Sbjct: 1 MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGACRLRAADGRTLQ 60 Query: 61 LRPGNVVLLPQNSAHRLSH---------------------------------VDNESTCI 87 L G+ VLLP AH L S + Sbjct: 61 LAEGDFVLLPAGGAHDLLDAAGGRSKPLVPLRDSHAGDGAVLPVKSNLDPAEPGGASVDL 120 Query: 88 VCGTLRLQHSARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCS 146 +CG A L +LP L + + S L+ L+ E+ + PG A+ + Sbjct: 121 LCGRFVYARGAGELLMRTLPPVLHVGLRDTSGAAP-LQLLTSVLRTEASNVQPGAGAIVN 179 Query: 147 QICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 + A+R + L+L RLG +Q +L+ P WTVESL + A MS Sbjct: 180 ALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPAQPWTVESLGAEAAMS 239 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 RA++A+ FR+ +G + A + ++R+ A + I ++VGY SE++F KAF Sbjct: 240 RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQADIGQAVGYQSEAAFGKAFRA 299 Query: 267 EFGCTPGEYRERVRQ 281 G TPG +R R+ Sbjct: 300 VLGTTPGRWRRARRE 314 >UniRef50_C6AWA8 Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AWA8_RHILS Length = 348 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 110/305 (36%), Gaps = 29/305 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD +L Q ++ + W + +G R + +G Sbjct: 24 MDPFDSVLSAMQLQSSLFVRMRAHAPWAMSFDSG--GQARLIVIAKGRGWFTQVGHPPVV 81 Query: 61 LRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQH 96 + G+ +++ Q L D E+ H Sbjct: 82 VEEGDCLIIKQGVMGILGDAPDRVAVPCWQIADHVTGETVSFGGDGEACEFFSTLFTFDH 141 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 +A L++L + + S + + + + +E A G + ++ F A Sbjct: 142 AAGEPLSALLPDVVHVAMAKS-DAGRMVSILEQIGKEEAQASLGGSYVVGRLLDVLFIQA 200 Query: 157 VREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R W + N + L+ L H +L + ++ H WT+E LA MSR++FA LF+ Sbjct: 201 IRSWASSEGNMPEGWLAGLTHRQLAQTLHRIHADLAHPWTLEQLARDVGMSRSTFAVLFK 260 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V G PL +T R+ A + + + A GY ++ + +AF G PG++ Sbjct: 261 SVVGVPPLTYITTWRIYRAKLILAAG-HSISAAAAQTGYGTDIALSRAFKAATGVAPGQW 319 Query: 276 RERVR 280 R R Sbjct: 320 RRERR 324 >UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UPU4_9BURK Length = 319 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 70/303 (23%), Positives = 111/303 (36%), Gaps = 32/303 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD LS +L L Q + W L A I++ ++ +G L + ++ Sbjct: 1 MDPLSDVLALLRVQSVLSARLEGAGPWALRFAA--YRHIKFGSIIEGDRWLWIDGTADVV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNES------------------------TCIVCGTLRL- 94 L PG+ LL + + + T V R Sbjct: 59 KLAPGDFYLLTDGRPYCFASAPDAPLRESVDVLPPHPDDDGVVRFGQGRTRTVGAGGRFI 118 Query: 95 --QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 +R L +LP + + L + E+ PG A+ + + + Sbjct: 119 LDDDVSRLLLDALPPLIHIRSDAPGTRALELAS--KLIAMETEDVRPGAVAMAASLASIV 176 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R W++ L L ++G ++ M W VE LAS MSR F++ Sbjct: 177 LVNILRAWLSGGKAPAGWLGALADAKVGRALRLMHGEVARRWKVEDLASAVAMSRTGFSE 236 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 FR G PL LT+ RL +A P+ IA +GY S ++F AF R +G +P Sbjct: 237 RFRVQVGLPPLEYLTRWRLTLACSALKAGDEPLAAIARQIGYESATAFSLAFRRMYGVSP 296 Query: 273 GEY 275 G Y Sbjct: 297 GRY 299 >UniRef50_O31249 Transcriptional regulator (XylS/AraC family) n=5 Tax=Acinetobacter RepID=O31249_ACIAD Length = 306 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 33/308 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS++ + +W A + + H + G+A + G T Sbjct: 1 MDALSKIFDDIHLNKSEYLYVKTQGEWAFHMLAQDALIA--HIILMGSAHFTLQDGTTQT 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLR--LQ----------------------- 95 G++VL+P AH D ++ I C ++ Sbjct: 59 AYSGDIVLIPSGQAH-FVSNDAQNKLIDCSNIQSFFDGHRNDAIELGTTSSDHGLIFTVR 117 Query: 96 -----HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA 150 H L +LP + + S WLR + F+ E++ PG D + + + Sbjct: 118 SHIDMHMGSPLLNALPSLIHIHHAMSSTGPEWLRVGLYFVALETQRIQPGRDKIFDHLMS 177 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F VR+ IAQ++ K+ L+ L+HP L + + P WTVESLA MSR+ F Sbjct: 178 ILFIECVRDHIAQLDDPKSWLTALMHPELSNALAAIHAYPEKPWTVESLADQCCMSRSKF 237 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 A LF+ + TPLA L + RL++A Q+ L + IA VGY+SE++F +AF R+F Sbjct: 238 ATLFQSIVHETPLAYLQQHRLRLAVQLLKTSQLNIQQIANKVGYSSETAFSQAFKRQFEQ 297 Query: 271 TPGEYRER 278 +P YR++ Sbjct: 298 SPKHYRQQ 305 >UniRef50_A8LC22 Transcriptional regulator, AraC family n=3 Tax=Actinomycetales RepID=A8LC22_FRASN Length = 311 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 129/313 (41%), Gaps = 35/313 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L ++ +GT+ G +W A +HA+T G A L P Sbjct: 1 MDVLADVLAVSGVRGTLGARIEAGENWGW--WAAASRGAAFHAVTAGTAWLASPGQSARQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHV---------------------------DNESTCIVCGTLR 93 L PG+VVLLP + H L+ T I+C Sbjct: 59 LMPGDVVLLPSGTEHVLASDTDTLARTGAHAFDSWEWADSGAVRIGSGPVRTHILCAHYS 118 Query: 94 LQHSAR-YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + LT LP+ + + N L + + L +E G + ++ Sbjct: 119 HDPAVTTQVLTLLPDLVHIRADNAGG---CLDDTVRLLGRELAHPRLGTAVVLDRLVDIL 175 Query: 153 FTLAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 +R W+A + L +L P +GA + ++ E P AWT E+LA +SRA+ Sbjct: 176 LIQLLRVWLATGQARPAASWLGVLDDPVVGAAVAKLHEDPARAWTTEALAGEISVSRATL 235 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 ++ F V G TP A LT+ R+ +AA+ + IA SVGY S +F++AF R Sbjct: 236 SRRFPAVVGETPGAYLTRWRMDLAARRLRDTDDTLESIARSVGYTSVYAFNRAFTRARSQ 295 Query: 271 TPGEYRERVRQLA 283 PG YR R A Sbjct: 296 PPGRYRVSARDSA 308 >UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MF52_VIBVY Length = 308 Score = 232 bits (593), Expect = 8e-60, Method: Composition-based stats. Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 21/293 (7%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 S L+ + N + +W + E + +H +T+G +L++P TL Sbjct: 21 PFSHLIQHMRLDVEVYHNAQVCGNWVI--NKDEATHTSFHMVTKGDCRLDVPDVMQETLN 78 Query: 63 PGNVVLLPQNSAHRLSHV----------------DNESTCIVCGTLRLQHSARYFLTSLP 106 G++V+ P+ H L+ + D +T ++C + QH + + Sbjct: 79 TGDLVIFPKELNHSLAPITPLSGEQQHLSYAQCQDPNATGLLCAKVEFQHIGIHGILQAL 138 Query: 107 ETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT 166 +F+ S + WL + + ES G D + ++ F A+R ++ Sbjct: 139 PCVFVIKAEESEK--WLTPIMSMILAESYQDGTGSDVIIGRLAELLFINALRAYLYSHPE 196 Query: 167 EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVL 226 + +LSL HP+L VI + + P H WT+ESLA MSR++ A FR +SG+T + L Sbjct: 197 QVGLLSLYAHPKLRHVISAVHQQPQHDWTLESLAKHCAMSRSALANTFRQISGSTVIEYL 256 Query: 227 TKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 T R+Q+A + ++AESVGY SE++F +AF + F +PG+ R+ Sbjct: 257 TWWRMQLAWSQIKAGD-SIALVAESVGYRSEAAFSRAFKKAFLISPGKARKEA 308 >UniRef50_A2SEH8 Transcriptional regulator, AraC family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SEH8_METPP Length = 337 Score = 232 bits (593), Expect = 8e-60, Method: Composition-based stats. Identities = 81/317 (25%), Positives = 126/317 (39%), Gaps = 40/317 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAG----------ELSVIRWHALTQGAAKL 51 D LS LL G + W + +I +H + G+ +L Sbjct: 19 DLLSDLLGSMHLAGMVLFRAAFREPWAVLTPGSAQLARVLPFRTEHIIPFHVIATGSCRL 78 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNES 84 +P E LR G+ VLLP +HRL Sbjct: 79 ALPGHEPVWLREGDAVLLPYGDSHRLEGLEETAPVQVGQLLPCQPWKDMPQVEHGGGGAV 138 Query: 85 TCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T I+CG L+ R L LP L ++P ++ WL I E+ PG + Sbjct: 139 THIICGFLQCDELLFRPILRHLPTLLHVSPDATPADH-WLGSTIRHTAAEASRTTPGSRS 197 Query: 144 LCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + ++ F +R+ + ++ ++ + P G+ ++ + + P W+VE LA Sbjct: 198 MLPRLTELMFVEILRKHMQGLSDDENGWFAACRDPVTGSALKLLHDAPLQDWSVERLARA 257 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 +SR A+ FR P+ L RLQ+AAQ P+ IA+ VGY SE++F + Sbjct: 258 VGVSRTVLAERFRHYLDQPPMQYLAHWRLQLAAQQLKTGDQPLKTIADRVGYESEAAFSR 317 Query: 263 AFVREFGCTPGEYRERV 279 AF R FG PG +R R Sbjct: 318 AFKRHFGLPPGSWRLRQ 334 >UniRef50_Q07PU3 Transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07PU3_RHOP5 Length = 344 Score = 232 bits (593), Expect = 8e-60, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 42/318 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHG----------AGELSVIRWHALTQGAAKL 51 DALS +L + + + W G VI++H + +G+ Sbjct: 4 DALSEVLRAVRLSSAMFFSLDVRGPWAAAAPASSECAPLVLPGAQHVIQYHVMVEGSCFG 63 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN----------------------------- 82 L G+++ PQ +AH LS Sbjct: 64 AWADAPGVRLDEGDIIAFPQGAAHTLSSEPGMRAAPDLGMYRQAGAGVLPHCVRIGEGDR 123 Query: 83 ESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 I+CG + + +LP L L + L I + E G Sbjct: 124 TDARILCGFMGCDARPFNPLIAALPPVLHLRRSAQPGHCS-LPHLISAARAEVEGRRVGG 182 Query: 142 DALCSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 + + +++ F A+R ++ ++ E+ L+ L +G V+ + P WT++SLA Sbjct: 183 EGVFARLGELLFVEAIRCYVETLDPEQTGWLAGLKDRHVGQVLNLIHADPASDWTLDSLA 242 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 A ++R+S A+ F + G P+ LT+ R+Q+AA + P+ IAE+VGY SE+ F Sbjct: 243 REAGLARSSLAERFTQLIGLPPMQYLTRWRMQMAANLLVAGREPIGRIAEAVGYDSEAGF 302 Query: 261 HKAFVREFGCTPGEYRER 278 +AF R G P +R+ Sbjct: 303 SRAFRRMVGSPPASWRKS 320 >UniRef50_C1ACW1 AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACW1_GEMAT Length = 335 Score = 232 bits (593), Expect = 8e-60, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 119/323 (36%), Gaps = 44/323 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE---- 57 D +S +L + + W + + ++ L +G+A LE+ G+ Sbjct: 5 DVVSDILRAVRLSARVFGRFEASAPWAMRVPGDDY--FAFYLLARGSAWLELTGGDTAIA 62 Query: 58 IFTLRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVC 89 L G+VVLLP +H L + +T V Sbjct: 63 PVALSAGDVVLLPHGGSHVLRDAEHSMAVAHEVGANSCPRPTTMETIRMGGGGTATTFVA 122 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G R R L + + L I + ES + PG L +++ Sbjct: 123 GAFRFGAEGRGILLETLPPVLHVAAGDADMGAALAATIQLILAESANPAPGGALLSTRLA 182 Query: 150 ATFFTLAVREW----------IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 A+R + L L P +GA ++ M P WTV SL Sbjct: 183 EILLVQALRVHTRRTYEANAAASDHTAHAQGLCALADPHIGAALRLMHARPADTWTVASL 242 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A SR++FA F ++ G +PL LT+ R+ AA+ + V IA+ VGY + ++ Sbjct: 243 AHEVGQSRSAFAARFAELVGESPLQYLTRWRMTQAAEWLRDRSDSVPAIAQRVGYGNAAA 302 Query: 260 FHKAFVREFGCTPGEYRERVRQL 282 F KAF R G PG YR RQ Sbjct: 303 FMKAFTRVQGQGPGAYRRAHRQR 325 >UniRef50_A9F1M5 Putative araC-like transcription regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F1M5_SORC5 Length = 373 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 121/308 (39%), Gaps = 33/308 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IF 59 MD LS ++ + L + W L AG + H +T+G+ LE+ G Sbjct: 31 MDLLSEIVGELRLESVSYWRLELTAPWALRFPAGGRGI---HIVTRGSCWLEVDGGRAPA 87 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNE--------------------------STCIVCGTLR 93 + G++V++P H L T IVCG R Sbjct: 88 AVASGDLVVMPSGRGHVLRDARGPRKASLIEELVRGASPGRAIEHGGAGLPTTIVCGQFR 147 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 L +LP L L +++ + E + G + +++ Sbjct: 148 FGTLGHPALEALPPVLHLR--GDERIGPFIQAHTQCIAAEVSAPAEGAAIVTARLSDVLL 205 Query: 154 TLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 A+R ++ V E+ L L P++G + +M P W+V +LA A MSRA+F+ Sbjct: 206 VQALRAYLRDVPADERGWLRGLADPQIGRALARMHRSPELDWSVPALAQEAGMSRAAFSA 265 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + G +P L R+ A + V +A +VGY SE++F AF R G +P Sbjct: 266 RFSEQMGVSPGKYLADWRMYRAKVLLRSGPALVAEVAAAVGYRSEAAFSFAFKRLVGSSP 325 Query: 273 GEYRERVR 280 YR+ R Sbjct: 326 SAYRDDHR 333 >UniRef50_Q21EK5 Histidine kinase n=2 Tax=Saccharophagus degradans 2-40 RepID=Q21EK5_SACD2 Length = 292 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 23/298 (7%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M A + + L + I N + +WQ+ A + +H +T+G L +P Sbjct: 1 MTASAGFIRLLNAKVDIYHNAKICGNWQI--NAHHVGRTCFHVVTEGMCLLALPGQADCV 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN----------------ESTCIVCGTLRLQHSA-RYFLT 103 LR G++VL P+ H L VD E T ++C +++L H A RY L Sbjct: 59 LRTGDLVLFPKEIEHTLMPVDPLAGEQQHLPYVQAQHLEGTGLLCASVQLNHGAGRYLLD 118 Query: 104 SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ 163 ++PE L + ++ WL L+ E P D + ++C FT A+ I Sbjct: 119 AIPEVLIIR---NNSANAWLSPLTELLRIEHYQQGPLGDVVIQRLCELMFTYAMANCIED 175 Query: 164 VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPL 223 + +L+L HPRL A IQ M + P +W++E+LA A MSR +FA F+++SG TP+ Sbjct: 176 STVQTGLLALYAHPRLSAAIQAMHDHPAKSWSLEALAQQAAMSRTAFATAFKELSGWTPM 235 Query: 224 AVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 LT R+Q+A + + PV ++A+ +GY SE++F +AF EF T GE R R Sbjct: 236 QYLTWWRMQLAWHLLADGE-PVAIVADKIGYQSEAAFSRAFKSEFKQTAGEVRRGARN 292 >UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9P9_ACTMD Length = 309 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 70/295 (23%), Positives = 112/295 (37%), Gaps = 18/295 (6%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + ++L L P+ + + W I+ + +G L + E L Sbjct: 20 DPVRQVLALARPRAVVPAPLRATAPWGARFSP--FPHIKLGVVAEGEFWLCVDGLEPILL 77 Query: 62 RPGNVVLLPQNSAHRLSH------------VDNESTCIVCGTLRL-QHSARYFLTSLPET 108 R G+ LL A+ L A ++LP Sbjct: 78 RAGDFYLLGNPPAYGLGSSVETAREGISGNGPGAFAYTCTVDFEFRDADASTLFSALPPA 137 Query: 109 LFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK 168 + + + W L E + G + + +R + Sbjct: 138 VVVRADETGGQLLW--NIATLLVHEFQEPRTGQSLVLEHLAQILLVHMLRSHADSSHEPL 195 Query: 169 NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTK 228 L+ ++ +GAV++ + PGH WT+E LA+IA MSR+SFA FR G PL L + Sbjct: 196 GWLASVVDDGIGAVLRAVHAEPGHRWTLEELAAIARMSRSSFAVNFRTKVGKPPLDYLIE 255 Query: 229 LRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 R+Q+A + IA ++GY SES+F AF R G +P E+R +R A Sbjct: 256 WRMQLARAALR-TDDSLTSIAGAIGYRSESAFSTAFRRVVGVSPREFRVSLRPRA 309 >UniRef50_P35319 Putative araC-like transcription regulator n=6 Tax=Streptomyces RepID=ARACL_STRLI Length = 304 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 118/303 (38%), Gaps = 30/303 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD L +L L + + + V G W + A V++++A+ +G +LE+ E Sbjct: 1 MDPLEDVLTLLKTRSHLSASLVAGGRWAVRFDA--PRVVKFNAVRRGTCQLEVDGIDEPI 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQH 96 L G+ LL + + L + ++ G Sbjct: 59 DLAEGDCYLLTRPRSFTLRSDPETAPVDGGVVFARAEDGIARAGQGDDVFLIGGGFSFGT 118 Query: 97 SARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A+ L LP + + + ++ A+ + QE + + Sbjct: 119 RAQELLLDRLPPIVHVP--ADTPHAETVQWALTAIDQELTHRPMASTLIAEHLAVIMLVH 176 Query: 156 AVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R + + L+ L P + + + P +WTV LA A +SR++ A F Sbjct: 177 VLRLHLERAPHAVSGWLAGLADPVVATALTCLHRDPARSWTVADLADTAAVSRSTLAARF 236 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G PL LT+ R+++AA+ + IA SVGY SES+ AF R G PG+ Sbjct: 237 KATVGQGPLEYLTRWRIELAARQLREGNATLASIAHSVGYGSESALSVAFKRVLGMPPGD 296 Query: 275 YRE 277 YR+ Sbjct: 297 YRK 299 >UniRef50_A4JQL6 Transcriptional regulator, AraC family n=6 Tax=Burkholderia RepID=A4JQL6_BURVG Length = 345 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 140/319 (43%), Gaps = 36/319 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP----TG 56 MD L RLL + G +D C GS W++ H + +H L +G A +E Sbjct: 20 MDMLDRLLSMMPVTGRLDVRCHFGSPWRIDHPESNERELPYHILLRGEAVVEGETGGADE 79 Query: 57 EIFTLRPGNVVLLPQNSAHRLSHVDNESTC-----------------------IVCGTLR 93 ++ G++V+ P SAHRL ++ ++CG Sbjct: 80 PTLRMKAGDIVVFPSGSAHRLHDGSGDAPRAVQERHRNGLTITTNGGADASIDVLCGRFV 139 Query: 94 LQHSARYFL-TSLPETLFLAPV--------NHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 L + L LP L ++ V + + L I +++E+ G A+ Sbjct: 140 LPAVPQQLLRDHLPRRLIVSSVAAGDGQTRDAAFAATRLARVIELMREEALEQRAGSAAV 199 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 + F L +R + + +L+L RL + M + P WT+ LA H Sbjct: 200 VDHLSGALFALTLRSASESGHAPRGLLALAQRHRLQPALTAMFDEPEKPWTLAQLAERCH 259 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSRA+FA+ F + + VLT++R+ +A + ++ T+ V I E+VGY SE++F + F Sbjct: 260 MSRATFARHFDEAISRSATDVLTEIRMALAGRKLAQTTMSVAEIGETVGYRSEAAFQRVF 319 Query: 265 VREFGCTPGEYRERVRQLA 283 R+ G TP ++R + ++A Sbjct: 320 KRQVGMTPAKWRMQATRIA 338 >UniRef50_A9AD06 AraC family transcriptional regulator n=5 Tax=Burkholderia cepacia complex RepID=A9AD06_BURM1 Length = 320 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 117/313 (37%), Gaps = 33/313 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS +L + L + W + A ++ + L + Sbjct: 3 IDLLSDVLTDLRADAVVTGRFTLSAPWAIRKPA--VAGAPFRTCAGSPFYLSVAGAAPVH 60 Query: 61 LRPGNVVLLPQNSAHRLSH-------------------------------VDNESTCIVC 89 + PG+ VLLP H ++ ++ + Sbjct: 61 VEPGDFVLLPHGDEHVMASSLDEPPVPFDTLMADKGIRPRFDTPLEFAAGGGGATSELYT 120 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G + + R L S+ TL + + WL + +ES + PG +++ Sbjct: 121 GIVVYRDIVRSPLFSVLPTLIHVRAHDAAVAPWLASTLQSFIEESMACQPGWAVAATRLA 180 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 F +R + L L P++G + M P W + SLA+ A MSR+ Sbjct: 181 DVLFVQLLRAHLQSSANHTGWLRGLTDPQIGRAMALMHRDPRRNWQLASLAAEAGMSRSR 240 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F F ++ G TP+ LT R+ +A+ ++ L ++ IAE VGY SE +F +AF R G Sbjct: 241 FCARFAELVGETPIGHLTAYRMYLASGELAQGRLRLIEIAERVGYTSEKAFARAFHRWSG 300 Query: 270 CTPGEYRERVRQL 282 P Y + L Sbjct: 301 MAPRRYARNAQDL 313 >UniRef50_C8SUE3 Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SUE3_9RHIZ Length = 344 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 116/319 (36%), Gaps = 37/319 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGE---------LSVIRWHALTQGAAKLE 52 D LS +L G++ N + + + + +H + G E Sbjct: 17 DLLSEMLKAVRLTGSVFLNACFSAPFGVVAPKYYDPVSPMACLRHISIFHFIVAGNCTFE 76 Query: 53 MPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNEST 85 GE + G+++ LP HR + Sbjct: 77 AANGERREVTAGDLLFLPFAGHHRFWKGEPLVMAAAGEIVQPGRIEGMWTVNYGGGGDEL 136 Query: 86 CIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 ++CG L + L + ++ + + + + +A PG A+ Sbjct: 137 RMICGFLESSEFLFAPVFRTLPALIVEKMSENKIGALIASTVREIDLHVAAAAPGSQAML 196 Query: 146 SQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 ++ F +R +A++ + L P +G +Q + P WTV +A Sbjct: 197 GRLMELLFVELLRRHVARLPPGSKGWFAALNDPIVGRTLQLLHADPARHWTVGQIADKVG 256 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 SR A+ F + G P+ LT R+Q+A + + IA VGY SE++F +AF Sbjct: 257 SSRTIVAERFNALLGRPPIEYLTGWRIQLAGERLRFGHESLASIAAGVGYQSEAAFSRAF 316 Query: 265 VREFGCTPGEYRERVRQLA 283 R G TPG++RER + A Sbjct: 317 KRVTGITPGKWRERTGRRA 335 >UniRef50_B2TGP8 Transcriptional regulator, AraC family n=13 Tax=Betaproteobacteria RepID=B2TGP8_BURPP Length = 323 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 35/318 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LSRLL L PQ ++D C+L + + HG E + +H + GA +E G Sbjct: 1 MDTLSRLLDLARPQASLDLRCLLSGAFDIDHGPLEAGIAPFHLVLDGACVVETADGTQRE 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-----------------------------------EST 85 LR G+ +L P+ +AHR+ V Sbjct: 61 LRTGDFMLFPRGAAHRVRDVQRSAVTAPLTQSHDGMLPLRRNDGSDSHDSLDSARIAADL 120 Query: 86 CIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 ++CG + L + F ++ + L+ I ++ E+ G A+ Sbjct: 121 DLLCGRFVYSPGSSALLLNALPDPFHVSLSGMETLDSLQTVIALMRSEAERRQAGALAIV 180 Query: 146 SQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHM 205 + + +A+R Q +L+LL RLGA +Q ML P AWT+ L +A M Sbjct: 181 TALSHALLAIALRVHGEQNAAASGVLALLADARLGASVQAMLSAPERAWTIAELGDLAAM 240 Query: 206 SRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFV 265 SRA++A+ F + + T + LT++R+ IA + R I E+VGY SE++F KAF Sbjct: 241 SRATYARHFNERASMTVMDFLTQIRMTIACDLLRRTQRSAAEIGEAVGYQSEAAFGKAFQ 300 Query: 266 REFGCTPGEYRERVRQLA 283 + G PG YR R ++ Sbjct: 301 QSVGVPPGRYRRRPQEND 318 >UniRef50_A6VZ04 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZ04_MARMS Length = 328 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 126/308 (40%), Gaps = 35/308 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAG-ELSVIRWHALTQGAAKLEMPTGEIFT 60 D ++ LL +G + + + + L G + + +H + QG+A L +G + Sbjct: 16 DMMNELLSGVRLKGLEYRRVEISAPFGLQFGEESDKRLAYFHFIGQGSAFLRTRSGAVHQ 75 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC-------------------------------IVC 89 L G+ VL+P H L D I Sbjct: 76 LACGDAVLMPCAGTHDLYSEDGVPLVSINAFEKVQLCDATSEISACNAEICRSKDNFIFS 135 Query: 90 GTLRLQHSARYFLTSL-PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 + + L L PE + + V + + + +E ++ PG + +++ Sbjct: 136 CAMEFDLGWLHPLAHLKPEVMHIETVPD--YDPQIPAILDVMTKELKAKRPGYSVILTRL 193 Query: 149 CATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 +R W+ + + P+L V+ + PG W+V +AS +SR+ Sbjct: 194 ADVVAAAILRRWVEIGCNVCGWVEAMRDPKLAQVLSALHHEPGRQWSVADMASEMGVSRS 253 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 FA+ F +++ +TP L LR+++A+Q S++ L + IA+ +GY S +SF +AF R Sbjct: 254 VFAERFTELTHSTPQQYLGNLRMRLASQWISQDNLSLDEIADRLGYGSAASFSRAFKRMT 313 Query: 269 GCTPGEYR 276 G +PG R Sbjct: 314 GISPGAVR 321 >UniRef50_C1F8R2 Transcriptional regulator, AraC family n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8R2_ACIC5 Length = 327 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 116/306 (37%), Gaps = 33/306 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IFT 60 D LS +L L P+G + G +W + + A+ G L + + Sbjct: 15 DPLSDVLSLLKPRGYMTGGIDAGGEWCFGF--EPSAGFKCFAVISGCCWLRLDAEDVTLR 72 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 L G+ V+L +RL+ + Sbjct: 73 LEAGDFVVLTHEGGYRLASDLDLPSMEIMSVIKEPLNGRILTWQGGGGCLGLSAIFSFGG 132 Query: 97 SARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 L+ LP + + + + L+ + + + R PG + + Sbjct: 133 EHASILSEVLPPVIHIR---NPEDRAVLQWYVERMMKVVREPRPGSVLMGEYLAQMMLVE 189 Query: 156 AVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 ++ +A + L L ++ A I M P WTV+ LA A MSR++FAQ F Sbjct: 190 VLQLHVANSASGAVGWLFALADRQVRAAIAAMHRAPAQRWTVQELAEQAGMSRSAFAQRF 249 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 ++ G ++ LT+ R+ +AA V IA S+GY SES+F AF RE GC+P + Sbjct: 250 KERVGLPAMSYLTRWRMMLAADQLMHSKDSVAEIAFSLGYESESAFGFAFKREMGCSPRQ 309 Query: 275 Y-RERV 279 Y R R Sbjct: 310 YGRNRA 315 >UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGT9_9NEIS Length = 316 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 M L L+ L G+ID C DW + H + + H +T G L++ + Sbjct: 1 MTILDNLITLAQITGSIDVQCSFNGDWYVRHSSQRTQGV-VHIVTHGTGYLKLDNEAQAR 59 Query: 60 TLRPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTL 92 L+ G+++ P+N+AH LS + + C Sbjct: 60 QLQAGDIIFFPRNAAHTLSSQIGCNNSQHAPSISQQGSITHKQTSASANAAQLNLYCAHF 119 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + L LPE + L ++ + + LQ E A + + Sbjct: 120 AYETH-NSLLQGLPEIIILN-----TPHSTTQAIVSLLQYEISQNEHSTTAAINALSTVL 173 Query: 153 FTLAVREWIAQVNTE---KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 +R +++Q + +L+ RL +V+Q + + PG W VE LA +A +SRA Sbjct: 174 LVHILRTYLSQNEHQAPLTGVLNGWRDRRLRSVVQAVTQEPGRDWRVEELAELAKLSRAQ 233 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 +LFR T+P A ++ +RLQ AA + ++ +A GY SE+ F K F + +G Sbjct: 234 LMRLFRSQMQTSPHAFVSSMRLQKAAMLLRNSQSTILAVALESGYQSETHFGKVFKKHYG 293 Query: 270 CTPGEYRER 278 CTP +YR++ Sbjct: 294 CTPKQYRQQ 302 >UniRef50_Q1MGU4 Putative AraC family transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MGU4_RHIL3 Length = 314 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 119/299 (39%), Gaps = 31/299 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS++L + + G I L W L G + + +G + G + Sbjct: 8 DLLSQILAMVSLHGEIVFTVELSQPWALRFHPG---AAYFFIVLEGGLTVVNDQGHALQV 64 Query: 62 RPGNVVLLPQNSAHRLSHVD---------------------------NESTCIVCGTLRL 94 G++++LP+ H LS + + T ++ G R Sbjct: 65 ATGDLIMLPRGLGHGLSDGECATEADLAALMAAQVTAEKLNVSHGGGGQQTKLIAGAFRF 124 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + ++ +L S ++ P W F+ +E++ PG + S++ Sbjct: 125 ESASVPWLVSALPSVIHIPKASGETAGWAEGLGYFMMKEAQEVYPGASIMISRLIDVLVI 184 Query: 155 LAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R W+ + L L R+ ++ + + P WTV LA +A +SR+ FA Sbjct: 185 SILRSWVRIERGGNVGWLGALGDARISRALKAIHDEPYRRWTVLDLARVAGLSRSGFAAR 244 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F + PL+ ++ RL +A + + V +A VGY SE++F +AF +FG P Sbjct: 245 FTALVKEAPLSYHSRWRLTLALGLMRQPDAKVGSVARQVGYDSEAAFSRAFKAQFGFAP 303 >UniRef50_Q47YP7 Transcriptional regulator, araC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YP7_COLP3 Length = 273 Score = 230 bits (587), Expect = 4e-59, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 120/280 (42%), Gaps = 7/280 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + + L + H E + H L G L G+ Sbjct: 1 MDQLSVILQRFSMNTEVFFTGNLCG---ISHFNKEPNRGHLHLLLSGELTLIDEEGKSRL 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 + V+ P AHR+ ++ +VC + S+ + + ++ + Sbjct: 58 VNEPTVLFFPTPHAHRIIGNEDNPPELVCANIIYNESSSNPIANALPSMM---SFKLSDD 114 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L++ +L +E+ G + + + F +R + + +L+ L HP++ Sbjct: 115 ERLKQTADWLFEEAFHERSGQLPMINSLTNIFLIHVLRHVLDNNIMQHGLLAGLAHPQVS 174 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 V+ + + P W +E +A +A MSR+ FA +F+ G +P L R+ +A + + Sbjct: 175 IVLLAIHKAPEQQWGLEEMAELAIMSRSKFADIFKRTVGQSPGDYLIDWRIIVAKGLLKK 234 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 PV ++A +VGY + S+ + F ++ G +P ++ E+ R Sbjct: 235 -DKPVALVANAVGYENGSALARVFRKKLGISPKQWVEQTR 273 >UniRef50_B7V4F0 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V4F0_PSEA8 Length = 303 Score = 230 bits (587), Expect = 4e-59, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 140/302 (46%), Gaps = 26/302 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L RL+ L QG +D+ C L W L H +H + G E G Sbjct: 1 MDPLDRLIQLANLQGRLDQRCQLQGSWALEHPQAVPGEATFHIVMAGTCYCEFLDGGRLD 60 Query: 61 LRPGNVVLLPQNSAHRLSHV-----------------------DNESTCIVCGTLRLQHS 97 L PG+++LLP+ + H L E+ ++CG+ R H+ Sbjct: 61 LHPGDLILLPRGTPHLLRSDSPAQPCEPTVEHRGSIPLYQLNGPGEALDMLCGSYRY-HA 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 +LPE L + LR I +++E+ S G ++ + F LA+ Sbjct: 120 GASLFGALPERLLV--HMDESTQQPLRALIGLMREEAESTRSGARSIIDALATALFALAL 177 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R ++ + + LL RLG ++ MLE P HAWT+E LA A MSRASF + F + Sbjct: 178 RAYLDRQPLGDGLFGLLGDARLGRALRAMLERPEHAWTLEQLAQQAAMSRASFVRAFSAL 237 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 GT+P +LT++R++ A + + ++ IA GY SE++F + F + FG +PG +R Sbjct: 238 GGTSPWNLLTRIRMEKARGLLRQTQKSLLDIAAETGYQSEAAFSRNFRQAFGESPGRFRR 297 Query: 278 RV 279 + Sbjct: 298 QA 299 >UniRef50_B9XR23 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobiales RepID=B9XR23_9BACT Length = 312 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 109/301 (36%), Gaps = 30/301 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDAL+ ++ L PQ + W + + + + + +G L Sbjct: 1 MDALAAVVTLLKPQAIVATLVHGSGRWGVSYS--KFGHPSFALVLKGPCWLSPDGIPAKI 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN--------------------------ESTCIVCGTLRL 94 L G+ VL P L+ S ++ G Sbjct: 59 LETGDFVLFPATPGFTLASDSKTKPKSMKPIPSGKQLEEVFHGDATTKPSASLLGGYFTF 118 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 L L + N + + I +++E+ G + +++ Sbjct: 119 DSINSSMLLDLLPKMVHLRGNDPGIGSVV-PIIELIKREALEKRAGQSLVLTRLIEIMLV 177 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R + +L+ L P+L ++ + H WT+ +LA A MSR+SFA F Sbjct: 178 EALRS-VQSDLNATGLLAGLRDPQLATALRGIHTRTEHPWTLATLAREAGMSRSSFAARF 236 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 V G TPL L RL +A M + V A +VGY S S F AF RE G +P + Sbjct: 237 GRVIGMTPLNYLLHWRLSVAKAMLNSGQKTVTETALAVGYESASGFSTAFSRETGQSPKQ 296 Query: 275 Y 275 + Sbjct: 297 F 297 >UniRef50_Q485B0 Transcriptional regulator, araC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q485B0_COLP3 Length = 304 Score = 229 bits (585), Expect = 7e-59, Method: Composition-based stats. Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 31/305 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS +L QG++ N S W L + + +H + +GA L++ + Sbjct: 1 MDSLSSILKSVRLQGSVYFNACFASPWGLDLDQNQRAY--FHLIIRGACYLQLGDKKE-Q 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDN--------------------------ESTCIVCGTLRL 94 L+ G++++LP +AH+L + + I+CG Sbjct: 58 LQGGDIIILPHGTAHQLFDDPSSVRVNATGVVPGLIDGINPFEGVGHSQDIDILCGYFNF 117 Query: 95 QHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 +S YFL +LP+ + L H +++L A+ F+ QE++ G + L ++ F Sbjct: 118 NNSTPSYFLNALPDVIHLT-QEHRTHFSFLDNALSFITQETKMKNLGREILIDRVTELLF 176 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 +R +I E+NI S L L +Q M WTVESLA MSR+ F++ Sbjct: 177 VQIMRVYININGNEENIFSALSDRTLSEALQLMHTESDKNWTVESLAKAIGMSRSRFSEH 236 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F + G TP+ L R+++A Q + +I+E VGYAS+S+F KAF + FG TP Sbjct: 237 FHNYIGETPMRYLHTCRMEVAKQKIEETESTLNIISEEVGYASDSAFKKAFKKFFGNTPS 296 Query: 274 EYRER 278 +R++ Sbjct: 297 TFRQK 301 >UniRef50_A0KDP5 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=A0KDP5_BURCH Length = 308 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 121/301 (40%), Gaps = 29/301 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LS +L L + + G W + I+++A+ +G+ L + G Sbjct: 4 DPLSEVLSLLETRDSFFTGLRAGGPWAVDLPP--PDGIKFNAVVEGSCWLTVDGAGPPVR 61 Query: 61 LRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQHS 97 LR G+ LL A L+ ++ G + Sbjct: 62 LRTGDCFLLAAPRAFSLASDPSVAPVPAADVYRHLERGIAHYGEPADCFLIGGRFAYEER 121 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 L SLP + ++ S LR ++ L +E ++ PG + + + Sbjct: 122 MPLLLGSLPPVVIVS--GDSEPAAVLRWSLQQLAREFGASSPGGSLMVRHLGHMMLVQIL 179 Query: 158 REWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R ++ + L+ R+ A + + P WTV++LA+ H+SR++FA F+ Sbjct: 180 RRYVDAGANGDVGWLAGFADARVSAALAAIHAAPERRWTVDALAACCHVSRSTFALHFKQ 239 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G PL + + R+Q+A + R + IA+ +GY S+S+F AF R GC+P YR Sbjct: 240 RLGFGPLEYVLRWRIQLAMRELRRSNASISAIAQRLGYDSDSAFGHAFKRIVGCSPRAYR 299 Query: 277 E 277 Sbjct: 300 H 300 >UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BUW4_BEUC1 Length = 322 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 77/324 (23%), Positives = 128/324 (39%), Gaps = 47/324 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGE----------LSVIRWHALTQGAAK 50 MD LS +L+ G + + S + + +I +H LT G+ Sbjct: 1 MDVLSDVLLAVRLTGAVYFDIEARSPFVAESPPTDKIAAKVAVDADHLIAFHVLTSGSCW 60 Query: 51 LEMPTGE--IFTLRPGNVVLLPQNSAHRLSHVDN-------------------------- 82 +E LR G +V+ A+ L+ Sbjct: 61 VEAVDEPEPAVLLRAGEMVIFSSGEANILASAPGMRGQPDASRYYRPVNEALPFVIDITG 120 Query: 83 ----ESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSA 137 + IVCG L L SLP + S + W+ + S Sbjct: 121 DAAADRCRIVCGYLACDKGPFNPLLDSLPRMVHAPVSERS--WGWMTSLLDAAIVASDER 178 Query: 138 MPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTV 196 G +A+ +++ F A++ I + + +N ++ L +G+ ++ M WT+ Sbjct: 179 DAGQEAMLAKLSELMFVEALKTHIEGLPADTRNWVAGLRDREIGSALRLMHGRFAEPWTL 238 Query: 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYAS 256 E LA MSR+S A+ F G P+ L + RLQ+AA++ + V A +VGY S Sbjct: 239 EHLARDVGMSRSSLAERFTAYVGVPPMTYLARWRLQLAARLL-QSGSGVAQAASAVGYQS 297 Query: 257 ESSFHKAFVREFGCTPGEYRERVR 280 ES+F++AF R+ G PG +R R+R Sbjct: 298 ESAFNRAFKRQVGEAPGVWRRRLR 321 >UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Proteus mirabilis RepID=C2LP41_PROMI Length = 308 Score = 229 bits (584), Expect = 9e-59, Method: Composition-based stats. Identities = 79/305 (25%), Positives = 137/305 (44%), Gaps = 26/305 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+LL L+ Q +D C + + LPH + +H + G +++ Sbjct: 1 MDTLSQLLYLSQGQLQLDVFCQMKGHFSLPHVSSVEHETIFHLVLSGQCYVQIEKSAPIV 60 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE--------------------------STCIVCGTLRL 94 L G ++L + +H L + + ++CG + Sbjct: 61 LSEGTFLMLNRRQSHTLWSGERDIEPLPFLHKNNGFLPVKYTKSEDQTQHVDLLCGRMTY 120 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + L + + +A + L L++E+ +A G A+ + + T F Sbjct: 121 AKGSGLLLLNGFPDMVVANLVEMPGLTVLNLFSQLLREEAINANQGAAAILNGLAQTLFA 180 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R + + + + L+LL PRL V ML P WT++SLA++A MSRA+F + F Sbjct: 181 FALRVYGQKPDINSSWLALLAEPRLSRVFNSMLNEPQKGWTLDSLANVASMSRATFVRQF 240 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + + TTP VL +R+ A + + + IAE VGY SE++F KAF F C PG+ Sbjct: 241 KATANTTPGEVLQSIRMLKALSLLQQNKYTLSDIAERVGYQSEAAFSKAFKSVFNCRPGQ 300 Query: 275 YRERV 279 ++++ Sbjct: 301 WKKQQ 305 >UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=Rhizobiales RepID=C6B202_RHILS Length = 303 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 28/299 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS + L + +G W A +++ A+ +GA + +P F+ Sbjct: 2 IDPLSDVFSLLDIESARCTRFEVGGQWAFRFPAKPA--LKFVAVLRGACSIVLPGEPPFS 59 Query: 61 LRPGNVVLLPQNSAHRLSHV----------------------DNESTCIVCGTLRLQHS- 97 L G+ LL A+ +++ ++ T ++ GT + Sbjct: 60 LVAGDTFLLANAPAYVIANDLDREPEDGIAFFDWEHSDIARHGSDETALIGGTFVIGGGN 119 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 AR L +LP + + + + L + L E + G + ++ A+ Sbjct: 120 ARLLLDALPPFIHIPASDRAA--ALLSTTLATLDDELEAGQMGSTLMTRRMGDILLVQAL 177 Query: 158 REWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R ++ + E + L +P++GA I + PGH WTVE+LA+ MSR++FAQ F++ Sbjct: 178 RAYVGRKGAAETGWIGALTNPQIGAAISLIHNSPGHRWTVEALATRIGMSRSAFAQRFKE 237 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + G PL +T+ R+ A + RE + V +A ++GY+SES+F AF R FG P Y Sbjct: 238 LVGVAPLDYVTRWRMHRAREALRREDVSVAGLAAALGYSSESAFGNAFKRVFGRAPKRY 296 >UniRef50_C6B325 Transcriptional regulator, AraC family n=5 Tax=Alphaproteobacteria RepID=C6B325_RHILS Length = 331 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 124/314 (39%), Gaps = 36/314 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLP-------HGAGELSVIRWHALTQGAAKLEMP 54 D LS LL G++ + DWQ A + +H + G+ L+ Sbjct: 18 DVLSALLSTIRLSGSLQFCFMPTGDWQTDATPSLAGLSAKASGTMPFHIVVAGSCWLKTE 77 Query: 55 TGEIFTLRPGNVVLLPQNSAHRLSHVDN---------------------------ESTCI 87 E L G+V++ P + H+L + + + Sbjct: 78 DEET-DLEAGDVLVFPFGTGHQLGAGRDGMLVLPTRDLPQKPWREIPVLRYGDETQGVRL 136 Query: 88 VCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 +CG L+ + L L + + +WLR I + +E G ++ + Sbjct: 137 LCGYLQWDGLSFAPLRQALPRLIHVRTRAANDGDWLRATIRQMVEEVDRPRAGGVSMLPR 196 Query: 148 ICATFFTLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 + F +R I + L+ L P L + + + P W++E LA+ + MS Sbjct: 197 LTEIIFIEILRHQIMMAEPSSVGWLAALADPSLSRCLSLIHDDPRRDWSLEQLAAASGMS 256 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVR 266 R++ A+ F+ + T+P+ + RL +A+ + P+ IA GYA+E++F++AF R Sbjct: 257 RSALAERFQAMLSTSPIRYIRDWRLYLASVALATSGQPIAAIAYEAGYATEAAFNRAFSR 316 Query: 267 EFGCTPGEYRERVR 280 F P +R + Sbjct: 317 AFATPPAAWRATAQ 330 >UniRef50_UPI0001B53B77 AraC family transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B53B77 Length = 317 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 129/310 (41%), Gaps = 34/310 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + +++ G + +L + W + + ++ I + + G+ L G+ L Sbjct: 3 DVVGQIVAALRRGGVVYGRALLSAPWGIAFESRSIATI--YVVIAGSYVLVPDGGQALHL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNES----------------------------TCIVCGTLR 93 G+V LLP + H ++ T +VCG Sbjct: 61 AQGDVALLPSGAGHVVADAPGRPAPTVRELFGADLEELSATDLVIEGEGLETVLVCGAYL 120 Query: 94 LQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 L+ ++ F+ SLP+ + + + L A+ L E A G A+ + + Sbjct: 121 LEPVPQHPFVDSLPDVVHVT--ASQMRGTSLAAAVHLLTTEVDQAGRGTPAVVASLLDLL 178 Query: 153 FTLAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 FT +R W + Q + L P +G + + + PG WTVE+LA + RA F+ Sbjct: 179 FTYTLRTWFLGQSDQLVGWAHALHDPAVGPALALLHDDPGKPWTVETLAHAVGVPRARFS 238 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F +G TP+ L R+ +AA++ + P+ IA VGY SE +F +AF R G Sbjct: 239 RRFTSTTGHTPMEYLGIWRMTVAARLLREDQAPLRQIARKVGYDSEFAFARAFKRIVGQA 298 Query: 272 PGEYRERVRQ 281 PG YR + Sbjct: 299 PGRYRATHHR 308 >UniRef50_A9GK43 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK43_SORC5 Length = 327 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 81/317 (25%), Positives = 128/317 (40%), Gaps = 36/317 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP--TGEI 58 MDALS +L + T + V + W + S IR+H + +G+A L + Sbjct: 1 MDALSAVLAPVRLRRTRWVSTVGRAPWGVALPEV-KSCIRFHYVVRGSAWLSVDKTDEPR 59 Query: 59 FTLRPGNVVLLPQNSAHRLSHVD-----------------------------NESTCIVC 89 L G++ +LP AH L T + Sbjct: 60 VALSGGDLAVLPLGHAHALRDHPRSPPRSFAELVRCAPNPTHDVIHIDLGTKGPETTFIT 119 Query: 90 GTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 G L A L +LP + + P ++L I F+ +E + PG + + ++ Sbjct: 120 GGFVLDDPLATPILATLPPLIRMTPDTEQAVPSFLEN-IQFITREIETNRPGSEIVLLRM 178 Query: 149 CATFFTLAVREWIAQVNTEKN-ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 F +R ++A++ + L L P A + M WTV SLA A +SR Sbjct: 179 ADVMFIQILRAYLARLPEDGGGFLGALRDPSTAAALGAMHRRAEEPWTVASLAKEAGLSR 238 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 + FA F + G PL LT+LR+Q AA + P+ ++ GY+SE+SF AF + Sbjct: 239 SVFAARFAALVGEPPLGYLTRLRMQKAAVLLREG-APLAKVSRLTGYSSEASFSHAFRQW 297 Query: 268 FGCTPGEYRERVRQLAP 284 G PG +R + P Sbjct: 298 AGMAPGAWRRHLESSDP 314 >UniRef50_C9R1V8 MtrA n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=C9R1V8_AGGAD Length = 305 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 38/309 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVI-RWHALTQGAAKLEMPTGEIF 59 MD L +L+ L G ++ C+ +WQ+ H A E + +H + QG L + + Sbjct: 1 MDCLDKLIQLAQVSGEVNIRCLFQGEWQVRHDADENQYVGAFHLIEQGDCWLTLENQQ-I 59 Query: 60 TLRPGNVVLLPQNSAHRLSH------------------------------VDNESTCIVC 89 L+ G + LPQN H ++ ++ + C Sbjct: 60 HLQAGELFFLPQNRPHFIASKAQDNVIQTRITPSDAQEDQQDLFKVYHIGQNSPDLKMFC 119 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 G L + +LP L L+ + L I LQQE+ G +L + Sbjct: 120 GMLYYNKP-SLLIDALPSYLHLSLRDTP-----LLPLIQVLQQEADKTRSGAKSLIDSLV 173 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 F +R + + +L+ RL V+ Q+L P AW +++LA++A MSRA+ Sbjct: 174 TVLFIYILRHGLQNEQLNQGVLAGFQDKRLNPVLTQLLNAPQQAWNMDTLAALAAMSRAN 233 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F ++F+ G P LT+LRLQ AA + ++ ++ IA VGY SE+ F KAF +G Sbjct: 234 FMRVFQHTIGMAPGKFLTQLRLQQAALLLNKTQKSILAIALEVGYQSEAHFSKAFKIAYG 293 Query: 270 CTPGEYRER 278 TP +YR+R Sbjct: 294 MTPSQYRKR 302 >UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QE65_PSYCK Length = 311 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 126/310 (40%), Gaps = 32/310 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS LL T +W + I ++ + G+ ++M +G + Sbjct: 1 MDALSVLLQNVHLFDTKYYRLNGTGNWSYSLTRQDT--IVFYLVMSGSFCIDMGSG-LRE 57 Query: 61 LRPGNVVLLPQNSAHR---------------------------LSHVDNESTCIVCGTLR 93 G+++++P H + + + ++ + Sbjct: 58 AHAGDIIMIPSAHNHVSYALNHHGESAKPLDELLTNCTEQVLDIQGDGDAQSSLILIECK 117 Query: 94 LQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 R L+ LP L + + I L E+ G A+ + + Sbjct: 118 YDKEMIRPLLSVLPTILPEINDESDGRFEVIDVEIRLLTLEAEHERMGKTAIINHWASIM 177 Query: 153 FTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R +I + + L + P L + M E P W++ LA +A MSR+SFA Sbjct: 178 MIECLRVYIESLPEATDSWLKAMKDPFLTKALVAMHENPSQNWSIHELAEVAGMSRSSFA 237 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 Q F+DV G PL L RL++AA+ + + I+E VGYAS+S+F +AF R +G + Sbjct: 238 QRFKDVVGMPPLTYLIDYRLRLAARYLRLQQNSISRISELVGYASDSTFSQAFKRVYGIS 297 Query: 272 PGEYRERVRQ 281 P YR++ ++ Sbjct: 298 PKAYRQQYQK 307 >UniRef50_Q15UL8 Transcriptional regulator, AraC family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15UL8_PSEA6 Length = 316 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 126/315 (40%), Gaps = 44/315 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT----- 55 MD L++L + N W + + +H ++ G L +P+ Sbjct: 1 MDVLNQLFATFKVSANVFHNGQYCGSWAI--NTSGTHYMNFHVVSHGTCFLTLPSVKRES 58 Query: 56 --------------GEIFTLRPGNVVLLPQNSAHRLSHV-------------------DN 82 + L G+VVL P++S H +S Sbjct: 59 EHEGDKHSECDQKQNTVIELVQGDVVLFPRDSEHVISGDLGSSAVVNTAASQNYASGIHP 118 Query: 83 ESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 +T +VCG H +T LP + + S + L + L ES+ G Sbjct: 119 SATGLVCGYFSHHHPLVASVTKHLPSVIIIKHQTVSTSASGLNYLLDALLDESKQPNKGS 178 Query: 142 DALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + +I + RE + + +L+ HP+LGA + + P WTVE LA Sbjct: 179 ALIMGRIAEAILAIIFREHL---PADNGMLAATAHPKLGAAMAAIHSEPDKKWTVEMLAQ 235 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 MSRA F +LF+ V +P+ +T+ RL +A +M + E + + A + GY +ESSF Sbjct: 236 RCFMSRAGFNELFKSVLHQSPMEYVTQWRLGLAYRMLADENVTTLHAALASGYENESSFS 295 Query: 262 KAFVREFGCTPGEYR 276 KAF R G +PG R Sbjct: 296 KAFKRVLGVSPGAVR 310 >UniRef50_Q88IN9 Transcriptional regulator, AraC family n=4 Tax=Pseudomonas RepID=Q88IN9_PSEPK Length = 306 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 8/278 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL + L G+ SV H L G + G+ Sbjct: 34 MDRLSTLLKHFNLHASAFHQGGFCGTTHL----GQHSVGHAHLLRSGRLAFKDKRGQRIE 89 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 L ++L + H L D + +VC TL+ A LT + P+ E Sbjct: 90 LTEPTLILAVRPQEHHLLATDADEAELVCATLQFDGGANNPLTLALPDFIIKPL---GEL 146 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L + +L +E+ G D + +++ +R IA + +++ L + +L Sbjct: 147 QGLDGTLDWLFEEAFGDECGRDVILNRLFELMIIQLLRHLIASRSIASGMMAGLANAQLS 206 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + + P W+V LA+++ MSRASFA FR++ G TP L R+ + + Sbjct: 207 RALVGIHDEPQRNWSVAELANLSGMSRASFASHFREIVGITPADYLANWRISLTQKRLRE 266 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 P+ +IA+ VGY S S+ + F R+ G +P ++ ++ Sbjct: 267 G-RPIALIADEVGYESPSALARTFRRKVGASPKQWLQQ 303 >UniRef50_A6VY86 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VY86_MARMS Length = 308 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 124/305 (40%), Gaps = 31/305 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 MD L+ ++ + + W + + I + L +G+A L P+ E Sbjct: 1 MDPLTDIITGLHIREANFTRMDASAPWGVK--SNGEHGINFVLLVRGSAILTTPSSSEAI 58 Query: 60 TLRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQ 95 L G+V LL ++ ++L T + + L Sbjct: 59 ALSSGDVFLLMGDAPYQLFDHEKSTLIDCVEVERLRRGNSIEIGGGGSVTSFISASFDLH 118 Query: 96 H-SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 A+ L LPE L L + I L E+ S G +AL S++ F Sbjct: 119 AIEAQPLLHVLPELLHLKLDQRRSLA--FQSVIEMLALETESPGLGSEALVSRLFELLFV 176 Query: 155 LAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 A+R + + + LS + L ++ M P WTVESLA A MSR+SFA Sbjct: 177 HAIRAYSMQPGGPTQGWLSAFANRNLRQALEAMHRAPEQVWTVESLAHTAGMSRSSFAAC 236 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 F+ V G +PL LT+ R+ A ++ L + I+ VGY S S+F + FVR TPG Sbjct: 237 FKAVVGQSPLDYLTRWRIYCATRLLQHGNLTLSEISSQVGYESVSAFSRVFVRITAKTPG 296 Query: 274 EYRER 278 +R+ Sbjct: 297 AFRKS 301 >UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XWK6_KLEP3 Length = 306 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 36/310 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ + + + K DW++ + + + + +G +LE+ E L Sbjct: 3 DPLAEVIAMLNLRAVLTKTVEGAGDWRVIRS--DQGLSFYGVVLEGGCRLEIDQHEPQLL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIV--------------------------CGTLRLQ 95 R G+ +L+P L+ + + + G Sbjct: 61 RAGDFILIPAAYRFALTSLTPPPSPALETIPVQLAEGHFRLGALDKPAQMQALIGHCASG 120 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + L SL + L + L++E+++ G + +++ F Sbjct: 121 STNASLLASLLPAFVVVR-----NQPRLATFVGLLKEEAQADRAGKSFVLARMVELLFIE 175 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 A+R + ++ L PR+ I+ + + P WTV LA+ +SR++ + F Sbjct: 176 AIRS--SGTLATPGLMRGLSDPRVAQAIRLLHQAPARRWTVNDLAADCALSRSTLFERFT 233 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 D++G TP+ L R+ +A Q S + + IAE +GY S S+F AF R G +PG+Y Sbjct: 234 DLTGMTPMGYLLGWRMTLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKY 293 Query: 276 -RERVRQLAP 284 R+R Q P Sbjct: 294 ARQRATQPPP 303 >UniRef50_D2PPT2 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D2PPT2_9ACTO Length = 315 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 82/310 (26%), Positives = 126/310 (40%), Gaps = 35/310 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L + +GT+ W L E + ++A+T G A L +P E Sbjct: 1 MDLLADVLAVAGVRGTLGARIEAADPWGLTWRGVEDAA--FYAVTAGTAWLSVPGREPLQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-----------ESTCIVCGTLRLQHS------------ 97 L PG+VVLLP H +S E G +R Sbjct: 59 LLPGDVVLLPTGPDHAISSAPGVWAPDCDPSAAEHARRTGGVIRFGEGEVRTHLLVAAYA 118 Query: 98 -----ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + LT LPE + L + L + + L +E + ++ Sbjct: 119 HDPAVSTQMLTLLPEVVHLRGDHGG---TCLDDTLRVLARELAYPQAASSVVIDKLADIL 175 Query: 153 FTLAVREWIAQVNTE--KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 +R W+A E + L++L P L + ++ + P WT E LAS +SR++ Sbjct: 176 LIQLLRVWLAGRPEETKHSWLAVLDDPLLTEALTKLHQDPARPWTTELLASELTISRSTL 235 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 A+ F V G +P + LT+ R+ +AA+ + IA SVGY S +F +AF R G Sbjct: 236 ARRFLAVIGQSPGSYLTQWRMDLAARRLRDSDDTLESIARSVGYTSVYAFSRAFSRARGV 295 Query: 271 TPGEYRERVR 280 PG YR R Sbjct: 296 PPGRYRITAR 305 >UniRef50_C0DSD5 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DSD5_EIKCO Length = 302 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 81/303 (26%), Positives = 133/303 (43%), Gaps = 34/303 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L+ L +G ID C LG + L H E R H + G+ L + G+ Sbjct: 1 MDVLDKLIYLARLRGRIDVCCRLGGGFHLEHKT-EPETARLHWVVSGSGWLRVGNGQTVA 59 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 L G+ VLLP ++AH ++ ++CG R Sbjct: 60 LSTGDAVLLPYDTAHSIADSLEGLEQPAGKPQLHGNGVLAVKDCGGNRLQLLCGQYRYTR 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 A +L +PE L L +R+ + E+ G + + + Sbjct: 120 HAALWL-GMPECLLLPL-------PEMRQTASMMLDEAERLRYGSGTVVNALSQVMLVAV 171 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + Q +++ + LS L PRL ++Q +L P W++ +A +A +SRA +LF+ Sbjct: 172 LRRYRQQ-SSDPSFLSQLEDPRLSGLLQAVLLAPQEDWSIARMAEMAKLSRAQLMRLFKS 230 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 V G +P + +RLQ AA + ++ IA G+ SES F++AF + FG TP +YR Sbjct: 231 VIGESPHRFVLSIRLQQAAVQLAASADTILRIALENGFVSESHFNRAFKQYFGQTPKQYR 290 Query: 277 ERV 279 + Sbjct: 291 VQQ 293 >UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=Bacteria RepID=Q399T6_BURS3 Length = 325 Score = 226 bits (576), Expect = 7e-58, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 116/309 (37%), Gaps = 34/309 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D L+ ++ L P K S W + + A+ G ++ + Sbjct: 22 IDPLTEVVTLLQPGARHSKYIRGASPWSISR--TVAGEPFYCAILDGGCRIAIDGHAPIE 79 Query: 61 LRPGNVVLLPQ-------------------------NSAHRLSHVDNE-STCIVCGTLRL 94 L PG+ +L+P R+ N T ++ G Sbjct: 80 LLPGDFMLIPAVYGVAMSSLEPPAPGVETAPPVELDPGEFRIGDPANPVDTRMMAGNCSF 139 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 S L SL H L + ++ ESR+ P D + +++ Sbjct: 140 GSSDASLLVSLLPRFV-----HVRGEPRLTTLVQLVRDESRAQRPARDIVLARLLEVLLI 194 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R + + N ++ L RL A I++M E P H WT+ LA A +SR++F + F Sbjct: 195 EALR-FTSGTNASPGLVRGLADSRLAAAIRRMHERPAHPWTIVELAKEAALSRSTFFERF 253 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 G P+ L R+ +A + R + IA VGY+S S+F AF R G P + Sbjct: 254 SRAVGLAPMEYLLTWRMALAKDLLRRNEGRIAEIAGRVGYSSASTFSVAFTRHVGRPPAQ 313 Query: 275 YRERVRQLA 283 Y + A Sbjct: 314 YAREEQATA 322 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 124/304 (40%), Gaps = 29/304 (9%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 L ++ +G+I + L + W + + + + R+H +G + + Sbjct: 18 VLDDVIDTLRFRGSIFFHSSLAAPWGMSLSS--IEMPRFHIALEGDFYV-GAGSSNINVN 74 Query: 63 PGNVVLLPQNSAHRLSHV---DNESTC---------------------IVCGTLRLQHSA 98 P ++V++P H ++ + I+CG + + Sbjct: 75 PMDIVMIPGGDMHWIADEIESERVPCEQAGDACALGMPLFQQGEITNKIMCGIVEYDEAI 134 Query: 99 RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 + + S ++ S + W+ + + E +++ ++ F + Sbjct: 135 EHPILSALPSIIQLSNIQSNDNIWM--TVKLIDAEIIRTNNKKNSIIDRLTEVLFIQLLN 192 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 +I + LS L PRL ++Q + + P WT++ ++ + MSRA+ + F+ Sbjct: 193 SFIEKNEHLTGFLSALKEPRLNKILQLIHQHPERQWTLDIISDVVGMSRATLQRKFKAAI 252 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G +P+ +++ R+ A Q+ L + IA+ +G++ + AF +G TP ++R++ Sbjct: 253 GVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFKDHYGDTPSQFRKK 312 Query: 279 VRQL 282 + +L Sbjct: 313 LEKL 316 >UniRef50_C6XBB1 Transcriptional regulator, AraC family n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBB1_METSD Length = 274 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 12/280 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ LL + L A + + H + G + + G + Sbjct: 1 MDQLAPLLRQITFSAQSFHSGELC-----QLVAFDENAGYIHIVRSGKVTMTVRNGPPQS 55 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVE 119 + +V+ P+ H L + E+ ++C + L L SLPE + L + S Sbjct: 56 ITQPSVIFFPRTCPHALVP-EGENAELLCAYVDLGAKVGSPLALSLPEAIVLPMDDMS-- 112 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 ++ + L +E+ G A ++ F +R +A I + L RL Sbjct: 113 --LVKPTLELLFREALQESFGRQAALDRLIEYFLIQMLRHVLAMGQLNGGIFAALADSRL 170 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 + M E PGH W+++ LA IA MSRA FA FR+ G TPL LT R+ +A M Sbjct: 171 KHAVNAMHERPGHPWSLDELADIAGMSRARFAVNFRETVGVTPLDYLTNWRMSVAQSMLK 230 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 P+ +A +VGY S+++ + F + G P E+ ++V Sbjct: 231 -SGRPIKSVAAAVGYQSQAALARVFAKRLGQAPTEWLKQV 269 >UniRef50_B4VBF5 Transcriptional regulator n=4 Tax=Actinomycetales RepID=B4VBF5_9ACTO Length = 322 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 116/308 (37%), Gaps = 36/308 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIF 59 MD +S + + W A + + +H + +G L G E Sbjct: 1 MDVVSDAIAAVRIGRPSSDRMRVSGSWCARFDAYDGAG--FHVVLEGTCWLLPDGGGEPV 58 Query: 60 TLRPGNVVLLPQNSAHRL-------------------------------SHVDNESTCIV 88 L G+ VLLP + H + S + ++ Sbjct: 59 ALGAGDAVLLPHGTGHVIADSAVDEATVRGAVRFEDWRAEERSERPSRQSPAAGAAVEML 118 Query: 89 CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 CG RL S + L + + N + LR AI L +E PG + Sbjct: 119 CGKYRLDRSRVHPLMAELPRVVH-LANRVGAHPELRSAIDLLGRELGGQRPGAWIAVPNL 177 Query: 149 CATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRA 208 VR + + T ++L P A ++ + P AWT + LA+ A +SR Sbjct: 178 LDLLLVYMVRSCLDEGATGV-WPAVLGDPVTAAALRALHADPAAAWTNDRLAAEAGVSRP 236 Query: 209 SFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREF 268 + A+ F + G P+A LT RL AA + P+ IA VGYA+ +F AF REF Sbjct: 237 TLARRFTALVGRPPMAYLTWWRLTFAATLLRDTADPLAAIARRVGYATPYAFSHAFNREF 296 Query: 269 GCTPGEYR 276 G TPG YR Sbjct: 297 GTTPGRYR 304 >UniRef50_Q488F1 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q488F1_COLP3 Length = 275 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 8/282 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS++L + + + L L G + H L G + G T Sbjct: 1 MDQLSQILENLSFNADVFFSGNLCGIQSL--GGADSKKGHLHLLKSGVLTIVCEEGHKVT 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVE 119 L +V+ +P S H++ +++ +VC + S + +LP+ + L H Sbjct: 59 LDKPSVIFMPGPSKHQVIASESDDAELVCADVDFHSGSGAALVNALPKFICLNIGQHDP- 117 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 + +L +E+ + G + +++ F +R I + + +L+ + HP+L Sbjct: 118 ---VGRTAHWLFEEAFNKQAGQQMIVNKLGDIFLIQMLRHVIKEGIVIQGMLAGMAHPQL 174 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 A++ + + P WTVE +A A MSRA FA LF+D G P LT LR+ +A + Sbjct: 175 SALMTALHKRPQEQWTVELMAETALMSRAKFAALFKDTIGQAPSDYLTDLRIALAQGLLK 234 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + PV +A VGY S+ + F ++ G +P E+ + R+ Sbjct: 235 K-DKPVSFVANEVGYEHGSALARVFRKKTGLSPKEWLMKFRK 275 >UniRef50_D2BAU8 AraC family transcriptional regulator n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BAU8_STRRD Length = 327 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 128/311 (41%), Gaps = 30/311 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IFT 60 D LS LL G + W + + +++ H + +G +E+P Sbjct: 6 DLLSELLAPLRLHGVFQSRWSARAPWGVAGESEHCAIL--HYVQEGECTVELPEAAGPIR 63 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC---------------------------IVCGTLR 93 LR G++ + P SAHRL+ T ++CG L Sbjct: 64 LRAGDLAVFPHGSAHRLADRPGRPTVPLSGLLPGRRPGTVRTVEIDGPGPVTTMLCGGLH 123 Query: 94 LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFF 153 +A L +F+ L + + L E PG + + F Sbjct: 124 YDGAATAPLYRALPAVFVLDRPMLERQPLLADTLRGLTCEWADGEPGAGLVALRAFELTF 183 Query: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQL 213 LA+R ++++ + +L L HP + + + WT+ESLA+ A +SR++FA Sbjct: 184 VLALRAVLSELTFGEPVLRALRHPAISRALLAVHSRFAEPWTLESLAAEAGLSRSAFAAT 243 Query: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 FRD+ G P+ LT R+Q AA++ + TL ++E VGY S FH AF G TPG Sbjct: 244 FRDLVGEPPMRHLTGRRMQEAARLLTETTLAQNRVSERVGYRSGVGFHLAFRTWCGQTPG 303 Query: 274 EYRERVRQLAP 284 EYR + P Sbjct: 304 EYRRSRQSAGP 314 >UniRef50_D2S4Y3 Transcriptional regulator, AraC family n=2 Tax=Actinomycetales RepID=D2S4Y3_9ACTO Length = 359 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 121/300 (40%), Gaps = 33/300 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + +L +G + W + A E + +H +T G LE L Sbjct: 41 DPVGGVLADLRIRGVFYCRAEATAPWGVEMPALE-GCMSFHVVTAGRCVLEADGVRSV-L 98 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTC----------------------------IVCGTLR 93 +PG++ L+P H L + +VCG ++ Sbjct: 99 QPGDLALVPHGRGHLLRSGPDAPIAGRADLLPQQYLAEHYSVLRLDGGGVPAGMVCGVVQ 158 Query: 94 LQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 + A + L LP L + WL + + ESR PG +A+ +++ Sbjct: 159 PERPGAAHLLDLLPPVLHVDG-RDGARGGWLPVLLGVIADESRHDRPGSEAVVTRLADVV 217 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 AVR W+ T L L P++G + Q+ PG AWT+ LA A MSR+SFA Sbjct: 218 VIQAVRAWLDTAATGPGWLRALRDPQVGRAVAQLHREPGTAWTLTRLAREARMSRSSFAA 277 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F +++G + + + R+ +A + V +A +GY SE++F +A+ R G P Sbjct: 278 RFTELAGEPAMHYVARWRMHLATVALAEGAR-VGELARQLGYESEAAFSRAYKRVVGVPP 336 >UniRef50_D2PNB5 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PNB5_9ACTO Length = 337 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 119/305 (39%), Gaps = 28/305 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D ++ + L P+ + + +W L +R + +G L + E L Sbjct: 6 DPVADAIGLLRPRTVVGPSLRAVGEWALRFDT--FLHVRIGGIVRGTCWLILDGHEPVLL 63 Query: 62 RPGNVVLLPQNSAH-------------------------RLSHVDNESTCIVCGTLRLQH 96 + G+ LL + R+ + + G + Sbjct: 64 QEGDTFLLGNPPPYVLASTLDARPRPAEPVWATAEDGFVRIGPESEQDLYLCVGHIAFDD 123 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 LT L L + + L + I L E A G + + + Sbjct: 124 RNAGLLTDLLPPLVIVR-GADPQGARLGQLIDLLATEVGIAAAGGPLVQNHLAQILLVHM 182 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R Q + L L +GA ++ + H+WT++ LA I+HMSR++FAQ F+ Sbjct: 183 LRAHAGQTDRPTGWLGALNEDGIGAALRALHADVAHSWTLKELAEISHMSRSAFAQAFKS 242 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G PL L + R+ +A +R+TL + +A + GY SES+F AF R G +P ++R Sbjct: 243 HVGVPPLEYLIQWRMSLARDALARDTLSISELARATGYLSESAFSTAFRRVVGSSPAQFR 302 Query: 277 ERVRQ 281 + RQ Sbjct: 303 NQARQ 307 >UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B4SR55_STRM5 Length = 277 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 119/282 (42%), Gaps = 8/282 (2%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ LL + ++ L L E + H + +G ++ + + Sbjct: 3 DRLAILLERFSVTASVFHAGALCGINSLE---SEDEAGQLHLVRRGPVQVS-HGQQTVQV 58 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYN 121 +++L P+ + HR S + C L + +++ P+ Sbjct: 59 EVPSLLLYPRPTPHRFSTDPQHGADMACANLHFEGGRLNPISAALPDFICLPLADLYGG- 117 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 A+ L +E+ G A+ +++ +R+ + + + L HPRL Sbjct: 118 --HAALELLFEEAFEQRCGRAAMVNRLFEVVMIQVLRQLMEGGEMRGGLFAGLGHPRLRL 175 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 + M E P AWT+E LA +A MSR+ FA FR+ GTTP L R+ +A Q + Sbjct: 176 ALVAMHESPAQAWTLEDLADVAGMSRSVFAASFREAMGTTPGQYLQGWRVGLAQQALRQG 235 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 P+ IA+ VGY SE++ +AF G +P ++R + R A Sbjct: 236 -RPLKRIADDVGYGSEAALSRAFKAHTGQSPRQWRGQARATA 276 >UniRef50_A8ZMX0 Transcriptional regulator, AraC family n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZMX0_ACAM1 Length = 328 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 126/317 (39%), Gaps = 39/317 (12%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGE-----------LSVIRWHALTQGAAK 50 D LS +L G++ + + W + + + +H + +G + Sbjct: 6 DILSDVLNSLDICGSLLLHESYTAPWAISVPGAQQLGKLLRVQTGTRAVAFHLVERGYIE 65 Query: 51 LEMP--TGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIV-------------------- 88 L P + + G +V+ S H++S + V Sbjct: 66 LTSPQLGVKPMVVEAGEMVICFSGSPHQISQGTEPPSISVEYVLSGGEIPFRCSADARSS 125 Query: 89 -----CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 CG L+ + L + + APV+ + L + +E G Sbjct: 126 SLLCLCGIFYLRDTYLNPLFAALPPVLHAPVSQVESFQNLTGVASLIAKELDKPSAGSSF 185 Query: 144 LCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + ++ AVR ++A+ + + L+ L P + + ++ PGH W+V+SLA Sbjct: 186 MVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVDSLAQS 245 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 +S + FA F+ G P+ ++K RL IA+++ +R + IA VGY + ++F + Sbjct: 246 VELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNLAAFTR 305 Query: 263 AFVREFGCTPGEYRERV 279 AF R FG PG +R R Sbjct: 306 AFKRYFGEPPGAWRTRH 322 >UniRef50_UPI0001C310C0 transcriptional regulator, AraC family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C0 Length = 321 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 130/306 (42%), Gaps = 34/306 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ LL +G + N + W + ++ + +HA+ GA +E+ E Sbjct: 1 MDVLADLLARAHARGAVFSNRRFAAPWGVEF--QDVFPLTFHAVLGGAMWVELEGEEPLQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES---------------------------TCIVCGTLR 93 L G+++L+ + +R H T ++CG Sbjct: 59 LFGGDLLLVRTGAPYRFVHAPGAPAVSMRRLLDGEPEQQPQPQPPQHDGPATQLLCGAYT 118 Query: 94 LQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 L+ S L SLP LAP+ LR A+ L E + PG + ++ Sbjct: 119 LEGSVCDSLLASLPS---LAPIRGGSVGGPLRTALGLLGDEVATEEPGQQTVLDRLLDLL 175 Query: 153 FTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 ++R W + + + L P G ++ + P H WTV LA++A +SRA+FA Sbjct: 176 LVYSLRAWFTRPEADVPGWYAALEDPAAGPALRAIHSDPAHQWTVAELAALAGLSRAAFA 235 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G PLA LT+ R+ +AA R + +A+ VGY SE + AF R +G Sbjct: 236 RRFSERVGEAPLAYLTRWRMSLAAGALLRPGATLAAVAQEVGYGSEFALSNAFRRTYGEA 295 Query: 272 PGEYRE 277 PG +R Sbjct: 296 PGRWRR 301 >UniRef50_C7Q710 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q710_CATAD Length = 319 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 133/308 (43%), Gaps = 35/308 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS L + + W L + +S +H + +G +L P GE Sbjct: 1 MDILSDTLEVLRTGRPMVTRTDAHGPWALKY--QPISGASFHVVMEGRCRLLRPEGEPLA 58 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 L PG++V L + S H + D T +VCG Sbjct: 59 LGPGDIVFLRRGSGHTMCDPDTPHPEPMDFAPHRLDDSSPIGQFTVEGPGPRTVLVCGAY 118 Query: 93 RLQHSARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 ++ R+ L + +PE + L Y LR AI L E RS PG DA+ + + Sbjct: 119 KIDADHRHPLFTNMPEIIHLPAA--PGRYPVLRSAIDQLCAEFRSPQPGSDAIVTALVDL 176 Query: 152 FFTLAVREWIAQVNTEK--NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 +R W A++ ++ + L + ++ + + PG WTVESLA+ +SRA+ Sbjct: 177 LLLHILRSWYAELPKDQTCGWAAALTDHAIAPALKAIHDAPGDPWTVESLAARTGLSRAA 236 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 FA+ F V G PL LT R+ AA++ V IA+ GY SE +F KAF R FG Sbjct: 237 FARRFAAVVGVPPLTYLTNWRMATAARLLRESPSTVNTIAQRTGYTSEFAFAKAFKRHFG 296 Query: 270 CTPGEYRE 277 PG YR+ Sbjct: 297 SPPGSYRK 304 >UniRef50_A9CGU4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGU4_AGRT5 Length = 321 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 113/304 (37%), Gaps = 26/304 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS ++ L P + K W + + A + + + GAA + + + Sbjct: 14 MDPLSDIVDLLRPSAAVSKPISGKGRWGVRYRAHDAPG--FALVLAGAAWVMIEGRDPLR 71 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC---------------------IVCGTLRLQHSAR 99 L G+ +LLP A L + G+ + Sbjct: 72 LGRGDFLLLPTTPAFSLCSETGVDCVPVEPQDRAVRHGEQEGMPDFLALGGSFAFERINA 131 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 L SL L P + L I L +E PG + + ++ A+R Sbjct: 132 SLLLSLMPGLIYVPAAEKR-ASRLARLIELLSEECAGEDPGKELIIRRMLEVLLVEALRR 190 Query: 160 WIAQV-NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 A ++ + P L + M +WTV LA IA MSR++F+ F ++ Sbjct: 191 PDAGNVAIPAGLVKGMRLPGLARALSAMHADVRASWTVAELAGIAGMSRSAFSARFLEMV 250 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RE 277 G P+ L + R+ +A R + IA+ +GY S S+F AF R G PG + R Sbjct: 251 GCAPIEYLARWRMALARDSLIRGVKSLDHIADEIGYESASAFSTAFRRRMGIAPGSFARA 310 Query: 278 RVRQ 281 R+ Sbjct: 311 NDRR 314 >UniRef50_C5CZF0 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CZF0_VARPS Length = 333 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 126/318 (39%), Gaps = 38/318 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGEL----------SVIRWHALTQGAAKL 51 D LS L G I + L + W ++ +H L +G A + Sbjct: 5 DPLSEALGNVRLSGAIFLDAELSAPWGFASPPASAGAHLIAPSAEHMVLFHLLVEGRASV 64 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNES 84 +P L G+V +LP AH L Sbjct: 65 RLPGQPRLALEAGDVAILPLGDAHELWNGRGAELTDSSALLPKILEGAVVSERGGGGGPV 124 Query: 85 TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 T +CG + AR F + LF + W+ + L + A G +AL Sbjct: 125 TKFICGYIGCDRQARRFFLAGLPPLFKVNIRRGSTGAWIESTLRHLASDREPAGAGRNAL 184 Query: 145 CSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +++ F +R +++++ ++ L+ +G + + P H WTV SLA A Sbjct: 185 LAKLAEALFIETLRRYMSELPRQRTGWLAAARDSAVGRALGAIHREPAHPWTVASLAEQA 244 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MSR FA+ F + G PL + + R+Q+ A++ V+ +A + GY SE++F++A Sbjct: 245 GMSRTVFAERFTRLLGEAPLGYVARCRMQLGARLLESTDDTVLEVALNAGYESEAAFNRA 304 Query: 264 FVREFGCTPGEYRERVRQ 281 F REF P YR + R+ Sbjct: 305 FKREFDVPPARYRMQRRR 322 >UniRef50_Q21T04 Transcriptional regulator, AraC family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21T04_RHOFD Length = 279 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 7/282 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL + + + + H + G ++ + Sbjct: 1 MDTLSNLLTHFSLHAGVFYTGNICGTHDY---GADALRGHIHLVKHGPVQVIGERHGVIN 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 + +++ LP+ +HRL + +VC T++ R + + L + E Sbjct: 58 ITEPSLLFLPRPDSHRLIADERAGADMVCATVKFGGGGRNPVNDSLPNVVLVKL---AEL 114 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 ++E + + E+ S G A+ +++C +R +A T+ L+ L RL Sbjct: 115 AKVQELLELMFDEAFSDQCGRQAVLNRLCEVLMIRLLRYCMAHGLTQGGTLAGLADKRLA 174 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 V+ + + P A + S+A++A MSRA FA FR+V+ TP L R+ A + R Sbjct: 175 KVLTDIHKDPARARDLASMAALAGMSRARFAARFREVTAETPADYLASWRIMTAQGLLKR 234 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 + +A+ VGY S S+ +AFVR+ GC+P E+ + + Sbjct: 235 GRQ-LKHVADDVGYGSASALTRAFVRKLGCSPTEWLKGRQDA 275 >UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A7MK74_ENTS8 Length = 304 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 26/303 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS+L+ L AP+ ++D +C WQ H + I WHA+ G+A+L + GE+ Sbjct: 1 MDSLSQLIALLAPESSVDLHCRFAGRWQSDHAQSPVGHIPWHAILSGSARLVL-NGEVIH 59 Query: 61 LRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQH 96 R G++ LLPQ +AHRL D+ ++CG R Sbjct: 60 ARAGDIFLLPQGAAHRLESHKQDGVAARVQRHDNAVVTEVVTEGDDTPLVMLCGEFRTGV 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 S + P +A + L + L ES S PG A+ ++ +T TL Sbjct: 120 SGALLFSGQPALQRIA-TGGREDCRSLAALLTMLSDESLSGRPGAAAIVRELSSTLLTLV 178 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R +A N + +L LL RL + +L P WT+ES+A+ +SRA+FA+ F Sbjct: 179 LRALLADENGAQGMLPLLADKRLAPAVSAVLTNPEQPWTLESMAARCFLSRATFARHFAS 238 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TP A L ++R+ AA++ RE + +AE+ GY ++++F KAF +G TPG++R Sbjct: 239 RYPLTPQAWLNQVRMARAARLLEREQDAIGRVAEACGYLTQAAFSKAFKNAWGVTPGQFR 298 Query: 277 ERV 279 ++ Sbjct: 299 QQH 301 >UniRef50_B5GM94 Helix-turn-helix domain-containing protein n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GM94_STRCL Length = 324 Score = 223 bits (568), Expect = 6e-57, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 105/292 (35%), Gaps = 23/292 (7%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP--TGEI 58 MD LL G L W L + + +G + GE Sbjct: 1 MDPFDDLLRGIRADGAAFSRQELSPPWALRFAEAGETELTLATPLRGEGWICSEEGGGEP 60 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNES------------TCIVCGTLRLQHS-ARYFLTSL 105 LR G+ +++ L+ T + GT R++ + +R L Sbjct: 61 RPLRTGDALIVRGPQPRLLADRPAARSGGPAPLPVTGRTTLFVGTYRVRGAVSRQLFGVL 120 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN 165 P + ++ + L + P + ++ +R W Q + Sbjct: 121 PPLMVMSGDGCP-------AVLDLLDALAGGVPPERQVVQDRLLDWLLVCTLRGWFDQPD 173 Query: 166 TEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 L L +G ++ M + P WT+ +LA+ + +SR + AQ F + G PL Sbjct: 174 GPPTGWLGALTDDTVGPALRAMHDAPERPWTLAALATASGVSRTTLAQRFTRLVGRPPLT 233 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 LT R+ +AA + + T + +A VGYA F AF R G +P YR Sbjct: 234 YLTDWRMALAADLLTESTATLAAVARQVGYADAFGFSAAFKRVHGVSPSAYR 285 >UniRef50_C6WLA0 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WLA0_ACTMD Length = 295 Score = 223 bits (568), Expect = 7e-57, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 25/286 (8%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPG 64 S ++ + + W+ + +H L +G+ L GE L G Sbjct: 2 SDVVEVARCGRAVHGRAGFDGPWRFRFST--CRGVGFHVLLRGSGWLVPERGEPLPLGVG 59 Query: 65 NVVLLPQNSAHRLS-------------------HVDNESTCIVCGTLRLQHSARY-FLTS 104 +VVL P+ H LS + + ++CG L S + L + Sbjct: 60 DVVLAPRRGGHVLSDLPVSEGAAPFSAVGASRGSGEGGAVDLLCGEYPLDGSRSHPLLEA 119 Query: 105 LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV 164 LPE + L + + LR A+ L +E R+ G DAL S + ++R W+ Sbjct: 120 LPEVVHLPARVNG--HRDLRAAVDLLGREVRAGRSGRDALVSGLLDLVLVYSLRAWLEDN 177 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 ++ L + +V+ + P W +E LA A MSRA+ A+ F ++G +P+A Sbjct: 178 P-DRGWARALRDEGVASVLDALHTSPAEQWRIEVLADRAGMSRATLARRFTALTGRSPMA 236 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 LT R+ +A+++ LP+ +A+ VGY+S +F AF R G Sbjct: 237 YLTWWRMVLASKLLKETELPLHGVAQRVGYSSPFAFSHAFKRYNGV 282 >UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y4B2_CROTZ Length = 312 Score = 222 bits (567), Expect = 8e-57, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 144/303 (47%), Gaps = 26/303 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS+L+ L AP+ +ID +C W H I WHA+ G A+L + GE+ T Sbjct: 9 MDSLSQLIALLAPESSIDLHCRFAGRWASDHAQSPAGHIPWHAILSGNARLVL-NGEVIT 67 Query: 61 LRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQH 96 + G++ LLP + HRL D ++CG R Sbjct: 68 AQAGDIFLLPHGAPHRLESHKQDGARAPAQRHENGVITEVVTEGDEAPLVMLCGEFRTGV 127 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 S + P +A + L + L ES S PG A+ ++ +T TL Sbjct: 128 SGALLFSGQPAVQRIA-TGARDDCRSLTALLTMLSDESLSGRPGAAAIVRELSSTLLTLV 186 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R +++ N +L LL RL + +L P H WT+ES+A+ +SR++FA+ F Sbjct: 187 LRALLSEENAAPGMLPLLADKRLAPAVSAVLANPEHPWTLESMAARCFLSRSTFARHFAS 246 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 TP L ++R+ AA++ RE + +AE+ GY ++++F KAF +G TPG++R Sbjct: 247 RYPLTPQGWLNQVRMARAARLLEREQRAIGRVAEACGYLTQAAFSKAFKSAWGVTPGQFR 306 Query: 277 ERV 279 ++ Sbjct: 307 QQH 309 >UniRef50_C5V7T6 Transcriptional regulator, AraC family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7T6_9PROT Length = 298 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 21/292 (7%) Query: 4 LSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLR 62 L+ L + L W + G+ + +H + G A + M + + Sbjct: 8 LNYFLRHLHLGSEVYYIGQLCDAWHMSTPGGDAT--TFHLVCHGGAWIHMQDHSQPTQMH 65 Query: 63 PGNVVLLPQNSAHRLSHVD------------------NESTCIVCGTLRLQHSARYFLTS 104 G++ P ++AH S ++ T ++CG L+L R L + Sbjct: 66 SGDIAFFPHDAAHTFSALEKVPDKPFDYRNPAPLDKTAPGTGLLCGHLKLPTHIRRLLLA 125 Query: 105 LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV 164 L + S +R I + +E+ GV A+ ++ T F VR + Sbjct: 126 SFPEFILIRPDQSPVGRQMRNLIEMMTEEAMQNDLGVTAILDRLSDTLFLYIVRHALHLE 185 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 +L+ L L + +E P AWTV+ +A +A SR++F++ F + P+ Sbjct: 186 PKLSPLLAALSDEHLRLAVSAFIEQPAQAWTVDRMARLACQSRSAFSERFTQLVKMPPME 245 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +T R+Q+AA M + E ++ +A GY SE++F KAF R G TPG+ R Sbjct: 246 FVTTWRMQLAAGMLAGEYSNMLDVALRCGYESEAAFRKAFKRIIGITPGKAR 297 >UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=Actinomycetales RepID=A8KZG5_FRASN Length = 330 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 116/317 (36%), Gaps = 41/317 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS + + + L + W + + + +H + G L Sbjct: 1 MDVLSDAVTMLRTGRPHSNSNRLWAPWGIRFPPTDGAG--FHIVLMGTCWLLRAGARPLR 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES------------------------------TCIVCG 90 L G++VLLP+ H L+ T ++CG Sbjct: 59 LAAGDIVLLPREPGHALADDPASPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCG 118 Query: 91 TLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 + L LP+ + L + LR A+ L E G A S + Sbjct: 119 AYMFDRFRLHPLLADLPDVIHLP--ARVGHHPRLRAAVDLLGAELAEPRAGAAASMSALL 176 Query: 150 ATFFTLAVREWIAQVNTEKN------ILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 +R W +T + + L P + A ++ M P WTV L + Sbjct: 177 DLLLLYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARV 236 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 +SR FAQ F + G PLA LT R+ +AA++ P+ +A GY+SE +F K Sbjct: 237 GLSRTVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKT 296 Query: 264 FVREFGCTPGEYRERVR 280 F REFG PG +R R Sbjct: 297 FKREFGVPPGAFRREGR 313 >UniRef50_B1MI41 Putative transcriptional regulator, AraC family n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MI41_MYCA9 Length = 306 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 11/287 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +DA S +L +G C + + A E H ++ + + Sbjct: 24 IDAFSGILSAIGLRGESALRCSAELPFDVSVPANER---VLHIAETAGLRVYVDGNPVCV 80 Query: 61 LRPGNVVLLPQNSAHRLSHV-----DNESTCIVCGTLRLQH-SARYFLTSLPETLFLAPV 114 L G++VL+ + +AHRLS + V G + +A L+ LP + + Sbjct: 81 LAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAERKAADPLLSVLPPAIIIQAA 140 Query: 115 NHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLL 174 + WL ++ + E + PG + S+I F AVREW + + E L+ Sbjct: 141 RPG--HEWLPLSLQLILAEILTPSPGSWVMISRILDLLFIHAVREWSSSSHAEPGWLTAA 198 Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 + PRL V+ + H W++ LA A SR++F Q F ++ G P A + + RL A Sbjct: 199 MDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTELLGQPPAAYIGERRLDRA 258 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 A + T PV I +VGY S+++F +AF R FG P +R R Sbjct: 259 AHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWRTHHRS 305 >UniRef50_B1K331 Transcriptional regulator, AraC family n=12 Tax=cellular organisms RepID=B1K331_BURCC Length = 348 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 29/307 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IFT 60 D S +L L + G W + A I++ A+ +G + + E Sbjct: 17 DPFSDILRLTNAESLATGGFSAGGAWAVRFPA--PDKIKFFAVVKGTCWVSIDGEETPIR 74 Query: 61 LRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQHS 97 G+V LL A L+ + + G + L Sbjct: 75 FGSGDVGLLTAKRAFVLASDPCVPPVDAMALFSGAGRSTVKLGNGDEFAQIGGHVLLDPV 134 Query: 98 ARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 L+ LP + + S + +R + L +E + +PG + +Q+ F Sbjct: 135 TGSLLSDVLPPWIHVPAA--SPQAVKVRWLLEKLVEERAADLPGAQLVSAQLSQLLFIQI 192 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + + L +PR+ ++ M P +W ++ LA+ MSR +FA FR Sbjct: 193 LRAHLKTSASLTGWLRAFGNPRIAPALRLMYGDPARSWHLDELAAACAMSRTTFASHFRA 252 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G PL L + R+++A + E +PV ++A+S+GY+SES+F AF R G +P YR Sbjct: 253 SAGVAPLTYLGEWRMRLAERRLRDEDIPVALLAQSLGYSSESAFSHAFKRMSGHSPTAYR 312 Query: 277 ERVRQLA 283 VR A Sbjct: 313 HVVRTAA 319 >UniRef50_B1G656 Transcriptional regulator, AraC family n=1 Tax=Burkholderia graminis C4D1M RepID=B1G656_9BURK Length = 327 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 22/295 (7%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS +L L +G + + P AG R+H + GA +L+ + TL Sbjct: 25 DVLSDVLDLIRLRGESIEIYETVEAQRKPFDAGR---ARFHFIQDGAFRLDAIAIDTTTL 81 Query: 62 RPGNVVLLPQNSAHRLSHVD-------------------NESTCIVCGTLRLQHSARYFL 102 G++VLLP+ AH LS + + ++ G+ + ++ L Sbjct: 82 VAGDLVLLPKGCAHVLSAIHARDSLPGSPSRPDECRSFAEKPFRVLTGSFVFESASAGSL 141 Query: 103 TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA 162 + + + S W + F++ E+ PG + S++ ++REW+A Sbjct: 142 IAGLPDVIHLRADASGTPEWQHAILRFVRLEASEPSPGAALMISRLIDLLVIRSLREWVA 201 Query: 163 QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTP 222 + L L RLG + M E P H W + +LA IA MSR+ FA F ++ G P Sbjct: 202 KSPAHSGWLRGLGDARLGRALAAMHEDPAHEWKLGALAKIATMSRSHFADRFTEIVGEPP 261 Query: 223 LAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 L L + RL +AA + + + A GY S+SSF +AF FG +PG R Sbjct: 262 LRYLARWRLSLAADLLRNGRVRISEAASVAGYQSDSSFSRAFKAHFGYSPGAIRH 316 >UniRef50_A9M194 AraC-family transcriptional regulator n=29 Tax=Neisseria RepID=A9M194_NEIM0 Length = 325 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 78/303 (25%), Positives = 134/303 (44%), Gaps = 33/303 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IF 59 MD L +L+ G++D C+LG W + H + + H +T G L + Sbjct: 25 MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGLV-HIVTSGNGYLCIDGETSPR 83 Query: 60 TLRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQH 96 + G++V P+ H LSH + + C R Sbjct: 84 PVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQCGNGQDMSLFCARFRYDT 143 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 A + LPET+FL + L+ + LQ ES + G ++ + + + L Sbjct: 144 HAD-LMNGLPETVFLNIA-----HPSLQYVVSMLQLESEKPLTGTVSVVNALSSVLLVLI 197 Query: 157 VREWIAQVNTE--KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R ++ Q +L RLG +IQ++++ P W V+ + + A+MSRA + F Sbjct: 198 LRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKMVAAANMSRAQLMRRF 257 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + G +P A + +RLQ A + + V+ +A SVG+ SE+ F KAF R++ +PG+ Sbjct: 258 KSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSETHFGKAFKRQYHVSPGQ 317 Query: 275 YRE 277 YR+ Sbjct: 318 YRK 320 >UniRef50_C0XNW0 AraC family transcriptional regulator n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XNW0_9CORY Length = 316 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 30/307 (9%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPG 64 + L G N DW L + + +H +T+G+ L LR G Sbjct: 8 AHFLRQLRMSGVFYCNTTARGDWGLRMP-VDPQCLSFHVVTEGSCWLISDGIPKLQLREG 66 Query: 65 NVVLLPQNSAHRLSHVDNES----------------------------TCIVCGTLRLQH 96 +V L+ H LS + + T ++CG + Sbjct: 67 DVALVQLGREHMLSASPDRTVAPRVDQLPQRYLSENYSIVNVGCDGSFTRLLCGMVSFDA 126 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + + + A + + + + + + L E + G +A+ ++ Sbjct: 127 PDVHNIVQALPPVVSARGMNLNDASSVVKLVGLLADELSADRLGGEAVAVRLADIIVVQI 186 Query: 157 VREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R+W + ++ E +++ L P +G V+ + + P W + +A I+ MSR SF + FR Sbjct: 187 IRKWFYEESSFEPGLIAGLADPAIGRVLHAIHDEPEKPWAIADMAKISAMSRTSFIEKFR 246 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +V G P A +T R+++A P+ V+ SV Y+SES+F KAF R G +P + Sbjct: 247 EVVGVAPAAYVTNWRMEVAKTRLIETNEPIAVVGSSVSYSSESAFSKAFARSVGISPSAF 306 Query: 276 RERVRQL 282 R+ + Sbjct: 307 RQAALRR 313 >UniRef50_A9AQB1 AraC family transcriptional regulator n=5 Tax=Proteobacteria RepID=A9AQB1_BURM1 Length = 317 Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 31/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D+LS+LL + G ++ C GS WQL I +H + G A LE G I Sbjct: 5 DSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTGSITE 64 Query: 61 LRPGNVVLLPQNSAHRLSHV------------------------DNESTCIVCGTLRLQH 96 L G++VLLP +AH L E ++CG ++ Sbjct: 65 LASGDIVLLPHGAAHVLHDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRFHIRP 124 Query: 97 SARYFLTSLPETLFLAPVNHSVEYN------WLREAIPFLQQESRSAMPGVDALCSQICA 150 + T + + L + ++ S PG A + + + Sbjct: 125 PHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASLVELMRMVSVGDKPGGYATLNALTS 184 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 FTL +R +L+L HPRL I M P W++ LA + +MSRA+F Sbjct: 185 ALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMSRATF 244 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F D G + +LT +R+ +AA + + +AES+GY S ++F + F + G Sbjct: 245 MRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTDKMGM 304 Query: 271 TPGEYRER 278 TPG++R R Sbjct: 305 TPGQWRRR 312 >UniRef50_A4Z2A2 Putative transcriptional regulator, AraC/XylS family n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4Z2A2_BRASO Length = 269 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 104/274 (37%), Gaps = 10/274 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD + L P+ L + + + H G L P + Sbjct: 1 MDPFAALFAHVTPRARTFFAGNLCN--SVDF----TDIGHLHLFKGGVLTLTQPGADDLA 54 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 L ++ P+ HR +VC T+ L + + L + P+ + Sbjct: 55 LHEPMLLFFPRGRTHRFVVDPARGADLVCATVELGGAEGNPIGEGLPELIVMPI---AGH 111 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L L E + G A ++ L VR +A +L+ L PRL Sbjct: 112 PTLAPVCDLLMAEGFADDGGRQAALDRLFDYLLILIVRHVVAHGGVASGVLAGLADPRLA 171 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + + P W+++ LA IA MSR FA FR G TP+ LT R+ +A Q+ +R Sbjct: 172 KALTAIHDAPARPWSLDDLADIAGMSRTRFADAFRTRVGRTPIEYLTLWRMALARQLLAR 231 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 PV +A VGY S ++F + F + G P Sbjct: 232 G-RPVKSVASQVGYDSAAAFSRVFSKVSGRPPRA 264 >UniRef50_A7JV94 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JV94_PASHA Length = 274 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 116/282 (41%), Gaps = 8/282 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+L+ L + + L E + H + QG L T Sbjct: 1 MDSLTHLFTQFQFRTDLFHLGQLCQIGSF----NEENKGYLHFVRQGRFILNQAAERPIT 56 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 + ++ P N H L +D+ I C R LT TL + +Y Sbjct: 57 IERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTH---TLHNIVILELAQY 113 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L + E G A+ +CA F R+ + + + +L L +LG Sbjct: 114 PELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQTGLLKGLADKQLG 173 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 V+ + P W VE LA++A MSR+ FA F+ G +P+ LT RL +A + + Sbjct: 174 KVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDYLTNWRLAVAQHLLQK 233 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 +PV ++AE VGY+ ++ + F+RE G +P E+ + ++ Sbjct: 234 G-IPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES 274 >UniRef50_Q392E1 Transcriptional regulator, AraC family n=32 Tax=Bacteria RepID=Q392E1_BURS3 Length = 349 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 43/315 (13%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D +S LL+ G + + + L G ++H + +G L +G+ L Sbjct: 29 DLVSELLLGMRLSGVQYRRIQVARPFGLNFGHV-TGRAQFHFVGRGPVLLRDASGDTMRL 87 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTC----------------------------------- 86 G+ +LLP H L + Sbjct: 88 EAGDAILLPHGGMHALVSDPDAPCREINGFEVAKICDTVASVASAGVSPASCATTEPGAG 147 Query: 87 ---IVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 I + L + + ++PE + + + Y +R + +++E+ SA G Sbjct: 148 DALIFSACMELDLGGMQPLVGTMPEFMHVGTLL--ARYPEIRPMLDAMEREACSARAGFA 205 Query: 143 ALCSQICATFFTLAVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + +++ VR W+ + L P+LG I + PG W+V LA+ Sbjct: 206 GILARLADVVAAFIVRGWVECGCGDATGWVQALREPKLGRAIVALHRDPGRNWSVAELAT 265 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 A +SR+ FA+ F +G TP+ LT+LR+++AAQ +R+ + +A +GY S ++F Sbjct: 266 EAGVSRSVFAERFLAATGMTPVRYLTELRMRLAAQWITRDHETIEAVAYRLGYGSLAAFS 325 Query: 262 KAFVREFGCTPGEYR 276 +AF R G PG R Sbjct: 326 RAFKRVVGKPPGAVR 340 >UniRef50_C8PYQ8 Transcriptional regulator, AraC family n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYQ8_9GAMM Length = 327 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 40/317 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS LL T +W + I ++ +T G +++ Sbjct: 1 MDALSMLLEDIHLYQTQYHYIHATGEWSFELDKKDC--IVFYLITTGGISIKVDDV-YRN 57 Query: 61 LRPGNVVLLPQNSAHRL-----------------------------------SHVDNEST 85 +V+++P H + ++T Sbjct: 58 AHARDVLMVPGGKKHLICGVGQSDIPSIDIAPLLTSQTVETINLGNPVIHSKGDEPAQTT 117 Query: 86 CIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 IV R L++LPE L + + L + FL ES G + Sbjct: 118 EIVAIVCHYDREITRPLLSALPEILPESESKDEQKMIMLDLGVKFLALESEQNRLGKMTI 177 Query: 145 CSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 ++I + VR +I + N L + P L + M + P WT+ LA +A Sbjct: 178 INRIASILMIECVRNYIEDLPEATDNWLKAVKDPYLAKALAVMHDRPETNWTIHKLAEVA 237 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 MSR+SFA+ FR+V G PL LT RL++AA+ + + I+E VGYAS+S+F +A Sbjct: 238 GMSRSSFAEHFREVVGVPPLTYLTDYRLRLAARYLRLQENSISRISELVGYASDSTFSQA 297 Query: 264 FVREFGCTPGEYRERVR 280 F R + +P +YR+ R Sbjct: 298 FKRVYKMSPRKYRQSFR 314 >UniRef50_UPI0001AEBE6B AraC family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBE6B Length = 298 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 130/303 (42%), Gaps = 30/303 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M L L + N +WQ+ I +HA+T G L Sbjct: 1 MKNLESLFDQLQITTNVFHNGQYCGNWQID--TSGTGFINFHAVTHGQCYLHRNDDGPVL 58 Query: 61 LRPGNVVLLPQNSAHRLSHV-------------------DNESTCIVCGTLRLQHSARYF 101 L G++VLLP +S H LS E ++CG QH Sbjct: 59 LEKGDMVLLPVDSPHLLSPTKTHTYKNVSASSIPVSEKLRAEGPVLLCGYFEYQHPLMRV 118 Query: 102 LT-SLPETLFLAPVNHSVEYNWLREAIPFLQQ---ESRSAMPGVDALCSQICATFFTLAV 157 +T LPE + S E L E++ L E + L ++I F L V Sbjct: 119 ITKELPEFWIIKKA--SKESRVLHESLQLLISASLEVSDSTFTSSVLLNKIAEVVFLLIV 176 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 + +++ ++ L LLHP + +Q + P W VE LASIA+MS++++A F+ Sbjct: 177 KHLMSKYSST---LGALLHPAIANSLQALHNAPEQHWNVEMLASIANMSKSNYAAKFKAC 233 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 +G TP+ LT+ RL+ A + P++ IA GY +E+SF KAF RE G +P + R Sbjct: 234 AGVTPIKYLTQWRLRCACTEIIQSNKPLITIANQYGYETEASFSKAFKREIGVSPSQKRV 293 Query: 278 RVR 280 + R Sbjct: 294 QAR 296 >UniRef50_B1KNX2 Transcriptional regulator, AraC family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KNX2_SHEWM Length = 297 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 27/299 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M AL+ LL TI ++ W + +H ++ G A L + Sbjct: 1 MSALNGLLSSFHLNATIFHRSLVCDPWSTD--TSGSGLASFHLISSGKAFLFCDDYQAEP 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC--------------------IVCGTLRLQHSARY 100 L G++V+ P +S H +SH ++ T ++CG + + + Sbjct: 59 LTAGDLVIFPHDSPHIISHSPDKQTAKETDGFVAYPFSDNTPHSAGLMCGYFDFKEDSSH 118 Query: 101 FL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 + LP + + + L I L E D + S++C FF +R+ Sbjct: 119 PVIAQLPSCILIKSQQNQGV---LASIIESLILEVTLGAQASDIILSRLCEVFFLSLLRQ 175 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 A+ N++ + L ++ V+Q + W + SLA++ SRASF F++ Sbjct: 176 LSAEDNSQMGLFRALQDTKMAKVLQAIDSNLAAPWDLNSLANVGGYSRASFINHFKNYLD 235 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 TTP L++LRL A + R V+ +A VGY+++ SF KAF R FG PG R Sbjct: 236 TTPQEYLSQLRLTKAKKQLIRGDA-VLKVALDVGYSNDVSFAKAFKRYFGYGPGVCRAN 293 >UniRef50_A8L3A5 Transcriptional regulator, AraC family n=1 Tax=Frankia sp. EAN1pec RepID=A8L3A5_FRASN Length = 349 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 29/308 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L LL G + +L S W + G E + H + +G+ + L Sbjct: 11 DLLGELLRPIRLTGVFQSHWLLNSPWSIE-GDSESDCVVLHYVIEGSCWIGTEGARPVLL 69 Query: 62 RPGNVVLLPQNSAHRLSH---------------------------VDNESTCIVCGTLRL 94 R G++ + P +HR+S + E T I+C L Sbjct: 70 REGDLAVFPTGRSHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQTRILCAGLYY 129 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + L + LR+ I L + R PG + +I FF Sbjct: 130 DANTVSSLYHALPWILTLEREAVEAELLLRDIIHQLVTD-RDGGPGARLITLRIFEVFFI 188 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 L++ + + +L+ L P + + M WT+ESLA MSR++FA F Sbjct: 189 LSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMSRSAFAASF 248 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 R++ G +P + L R++ +A++ + +P+ I + VGY S FH AF + FG TPGE Sbjct: 249 REIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRKRFGITPGE 308 Query: 275 YRERVRQL 282 YR+R R++ Sbjct: 309 YRQRFRRV 316 >UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=Dickeya zeae Ech1591 RepID=C6CFN8_DICZE Length = 307 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 128/307 (41%), Gaps = 30/307 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IF 59 MD L L+ G + + + W L + HA+ QG A L + G+ Sbjct: 1 MDILQEHLVRARASGGVFARSIAIAPWGLRLP--GTIQLAVHAMIQGRAWLWLDGGDDPI 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNE----------------------STCIVCGTLRLQHS 97 LRPG++ L+ H ++H + +CG R Sbjct: 59 ELRPGDLALVRGGPDHFVAHEPGACCVVPEVFRTEHAADGAEHDPRAAVFLCGAYRFAGD 118 Query: 98 -ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + LP + S N + + L +E A PG + ++ L Sbjct: 119 IGAGLVNGLPPVFLIP----SRMDNPVHGVVELLSRELSQAEPGRQTVLDRLLDVLVVLG 174 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R +A + RL +Q M +WTV+ LA +++MSRA+FA++F++ Sbjct: 175 LRSGLASSVNAPAWVRGATDARLSLALQAMHGDTSKSWTVDELARMSNMSRATFARVFQE 234 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 V G TP+ LT R+ +A + + +P++ +AE VGY+S +F AF R G PG++R Sbjct: 235 VLGNTPMRYLTDWRMTVARDLLRTQDIPLIEVAERVGYSSLYAFVTAFRRHHGQPPGKWR 294 Query: 277 ERVRQLA 283 + + L Sbjct: 295 QSGKDLP 301 >UniRef50_B0U5T8 Transcriptional regulator AraC family n=12 Tax=Proteobacteria RepID=B0U5T8_XYLFM Length = 285 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 6/278 (2%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L LL + + + L + + + H L GA + P E+ + Sbjct: 11 DRLEALLNHFPVRARMFHSGALCG---IADFSVPAEGGQVHLLRSGAMDVIHPGRELLQV 67 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYN 121 +++ P+ + R +VC L + + + + P+ + Sbjct: 68 SVPSLLFYPRPMSRRFVADAQCGADLVCAQLDFEGGSANQVAGALPDVVCLPL---ENID 124 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 + + L E+ G L ++ +R + +L+ L HP+L Sbjct: 125 GAAQVLELLFDEAFGDHCGRRVLIDRLFEVVLIQMLRYLMETGGVAGGMLAGLSHPKLRK 184 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 V+ M E P W++E+LA +A MSR+ FA FR V G TP L R+++A Q + Sbjct: 185 VLVAMHEQPERGWSLEALAYLAGMSRSVFAGTFRRVVGCTPGVYLQGWRVKLAQQALRQG 244 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + IA VGY SE++ +AF + G TP E+R+R Sbjct: 245 RQLLKTIAVEVGYGSEAALSRAFKAQCGMTPREWRQRQ 282 >UniRef50_B8CRW0 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CRW0_SHEPW Length = 311 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 122/299 (40%), Gaps = 27/299 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M +++LL TI +L + W + +H ++QG A L + Sbjct: 15 MTDINKLLANFHLNATIFHRSLLCNTWSTD--TSGSGLASFHLVSQGQAYLYCDDIKALE 72 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTC--------------------IVCGTLRLQHSARY 100 L G++V+ P ++ H +S D+ T ++CG + Sbjct: 73 LNAGDLVVFPHDAPHIISSSDDAETAASINSFIAYPMAHKSANQTGLICGYFDFSEDKSH 132 Query: 101 FL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 L LP + L + + L + L +E++ + + + S++ FF +R+ Sbjct: 133 PLICQLPTCMVL---HKHQQQGALAGIVQSLIEEAKLGLLANEVILSRLSEVFFLNLIRK 189 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 T + L P++ V+ + H WTV ++A I SRASFA F+ Sbjct: 190 LSLDEQTNIGLFKALQDPKMNKVLHAINTDLAHHWTVNTMAEIGGYSRASFASYFKSYLE 249 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 TPL LT+LRL A + V A VGY ++ SF KAF R FG PG R+ Sbjct: 250 LTPLEYLTRLRLSQAKKQLRAGD-SVYKTALDVGYQTDVSFAKAFKRYFGYGPGSSRKS 307 >UniRef50_Q2KWV1 AraC-family transcriptional regulator n=1 Tax=Bordetella avium 197N RepID=Q2KWV1_BORA1 Length = 321 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 141/313 (45%), Gaps = 32/313 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+LL L + D C+L + + H A + +H L G +L+ G Sbjct: 1 MDTLSQLLSLGRIELRPDVRCLLQGAFAMRHEAAQPGEAAFHLLLAGQCRLQARQGPALI 60 Query: 61 LRPGNVVLLPQNSAHRLSHVD----------------------------NESTCIVCGTL 92 L G+ VLLP SAH L ++ ++CG Sbjct: 61 LNEGDFVLLPHGSAHDLLDIEATTARRPVPAVVEEAGRLPLRRNTAPEQQADVDLLCGRF 120 Query: 93 RLQHSARYFL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICAT 151 A SLP L + +H L+ I L+ E+ S +PG A+ + + Sbjct: 121 SYDRGAGDLFARSLPGVLHVPLAHH---LPQLQPLIAMLRAEAASPLPGAAAVINALGQA 177 Query: 152 FFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 LA+R + + N+L+L R+G ++ M++ PG AWT+E+L + A MSRA++A Sbjct: 178 LLALALRAYGQREEVPANMLALAADSRIGPSVRAMIQDPGQAWTIETLGNKAAMSRATYA 237 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + FR +G T L ++R+ A+ + + IAE VGY SE++F KAF G T Sbjct: 238 RHFRSRAGMTVGEFLLRIRMMHASALLNHSQRSQRDIAEQVGYQSEAAFGKAFREIMGQT 297 Query: 272 PGEYRERVRQLAP 284 PG++R R P Sbjct: 298 PGQWRRLHRNARP 310 >UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-type DNA-binding domain and DSBH domain n=1 Tax=Idiomarina loihiensis RepID=Q5QTS9_IDILO Length = 307 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 23/295 (7%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG--EIFT 60 AL+ LL A + L W L A E + +H +T G +P E Sbjct: 14 ALNELLEQVARGTELHFESGLCGHWTL--MAKEPGKVAFHVVTNGDCWFGLPGSSVEPIK 71 Query: 61 LRPGNVVLLPQNSAHRLS-----------------HVDNESTCIVCGTLRLQHSARYFLT 103 L +++ + ++ +H LS D+E + +VC + A L Sbjct: 72 LSASDIIFVNKDVSHFLSKTQIPSDISESDIPKYCQRDHEQSGVVCYDVNSAPGANDTLF 131 Query: 104 SLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ 163 L + + + ++ L I ++ E+ + PG + S++ +R+ I + Sbjct: 132 QLLPPWLI--LKQADQHQQLSHIIELIRAETINQSPGYQTVISRLSDVLSLNLLRQVIDE 189 Query: 164 VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPL 223 + + L+ L +L VI ++ PG WTVE LA +A++S ++FA+ +G TP Sbjct: 190 DESLRGPLAALSDRQLRTVIMAVINEPGADWTVERLAELAYLSVSAFAERCIKKTGVTPK 249 Query: 224 AVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 ++ +LRLQ A M S L + +IAE +GY S ++F + F + G +P EYR + Sbjct: 250 KLVDQLRLQRARIMLSSSQLSMDLIAEQLGYQSATAFSRFFKKYAGLSPAEYRHQ 304 >UniRef50_C7PXM7 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PXM7_CATAD Length = 306 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 126/309 (40%), Gaps = 32/309 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDA+S L+ + G +D C+L L + + +H L G E+ G Sbjct: 1 MDAISTLIRMARLDGVVDVRCLLTGSHVLDNPP-TSGRVPFHLLLDGYCTAEI-DGHTID 58 Query: 61 LRPGNVVLLPQNSAHRL------------------------SHVDNESTCIVCGTLRLQH 96 LRPG+V++LP+ HR+ S D + + CG Q Sbjct: 59 LRPGDVLVLPRGGEHRVRVTTEAPAVPADLRQGASVATLASSSADASTIDLFCGHYTYQP 118 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 A L + + A + LR ++ E+ PG AL + +C L Sbjct: 119 GAGELLIAGLPDILHASFGTGPDSP-LRLLGELMRSEAGLDGPGAGALLASLCEALLALV 177 Query: 157 VRE----WIAQVNTEKNILS-LLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 +R A + + P L AVI ++ P WT+ LA +A +SRA+ Sbjct: 178 LRGDGTGHPATTTLPTPWTAVAVTDPGLRAVIDAVVHRPREPWTIAVLAHLAGVSRATLV 237 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F +G LT++R+ IAA + + + +AE+VGY S S+F KAF G T Sbjct: 238 RHFSAATGMGVADFLTRIRMTIAADLLTTTDRSLDAVAEAVGYQSTSAFGKAFRTATGTT 297 Query: 272 PGEYRERVR 280 P R VR Sbjct: 298 PSRLRRAVR 306 >UniRef50_B8ESK8 Transcriptional regulator, AraC family n=8 Tax=Proteobacteria RepID=B8ESK8_METSB Length = 304 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 8/273 (2%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS +L G + L QL AGE VI +T GA +E + Sbjct: 23 DLLSHVLAQIRLTGDQVFSRALAEAEQLDIDAGEAHVI---VVTAGALHIESDNQTRAVI 79 Query: 62 RPGNVVLLPQN-SAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 G++VLLP+ RL T +VC S R + +LP+ + + + + Sbjct: 80 DTGDLVLLPRGPGESRLVASHQRVTLVVCRFWFDPDSLRSMIFALPQRIHIQRADAAG-- 137 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 W+ + FL E+ PG + S+I +R W+ + T L L R+ Sbjct: 138 -WIDGMLRFLMIEAGDIQPGAALMISRIIDLLVIRVLRSWVHKGQT-SGWLGGLTDARIA 195 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 ++ + E P W++ +LA + MSR+SF + F + G +PL + RL +A M ++ Sbjct: 196 RSLKAIHEKPMQRWSINALADLVGMSRSSFCERFTALVGRSPLRYQNEWRLALARDMLAK 255 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 V I +GY SE++F +A+ + FG +P Sbjct: 256 RDARVGEIGLRIGYESEAAFSRAYKKLFGHSPR 288 >UniRef50_D0XYL8 Transcriptional regulator, AraC family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XYL8_9CAUL Length = 322 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 113/300 (37%), Gaps = 25/300 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS ++ L P + K W + + A ++ + + +G + Sbjct: 1 MDPLSDIITLLRPSSIVSKPITGRGRWGVRYAAHDMPG--YTIILKGRCWIAFEGQAPMA 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDN---------------------ESTCIVCGTLRLQHSAR 99 L G+ +LLP A L + + G R++ + Sbjct: 59 LEEGDFLLLPSTPAFVLGSHPDVDGPSRDPSDAPVRHGDQEGEAQFESLGGAFRIERANA 118 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR- 158 L +L + P + L I + QE PG D + ++ A+R Sbjct: 119 PLLLALMPRMIHIPASEGRTA-RLGTLIGLIVQECAREDPGKDMILQRLLEVLLVEALRW 177 Query: 159 EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 +A + +L + P L V+ M WTV LA +A +SR++FA F + Sbjct: 178 RPVAGDDARTGLLRGMRDPALARVLSAMHSDVRAHWTVAGLAKVAGLSRSAFAARFGEAL 237 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G P+ L + R+ +A + IA+ +GY S S+F AF + GC+PG + Sbjct: 238 GCGPIEYLARWRMALAKDALIGGAKTLDRIADEIGYESASAFSTAFRKRLGCSPGRFARA 297 >UniRef50_Q2SGY3 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SGY3_HAHCH Length = 331 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 31/299 (10%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 L ++L G++ + L DW + A E I++H + G L T E L Sbjct: 18 LLRQVLFNLRISGSLYFDSQLHGDWGMAVSASEY--IQFHCVAAGVCWLTTAT-EQVRLS 74 Query: 63 PGNVVLLPQNSAHRLSHVDNEST------------------------CIVCGTLR-LQHS 97 PG++ L + H LS+ + + ++CG + Sbjct: 75 PGDIALCMRGQVHTLSYAPDVALATDQAYLESLRQGAPLFREGPFNNRLLCGHFAIMDRD 134 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 FL +LP+ L + + SVE+ + ++E S + + +++ + Sbjct: 135 TVPFLAALPDLLVVRHQSKSVEWANALRGLLESKKELESND---NPVSNRLAEALMIRFL 191 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 + Q + + + ++ R+ + TVE +A MSR++F+ LF+ Sbjct: 192 EGYFQQQSQQGEPVGVIQDRRIARALNIFHRRYHEPLTVEQVAGAVGMSRSAFSVLFKRN 251 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 P+ L R A ++ + P+ ++ VGYASE++F +AF R + TPGEYR Sbjct: 252 LKQGPMEYLNSWRFYQARKILQQSHRPLSQVSLDVGYASEAAFSRAFKRRYDITPGEYR 310 >UniRef50_C6W947 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W947_ACTMD Length = 309 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 111/299 (37%), Gaps = 30/299 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD + +L + W + + +R + +G L G + Sbjct: 1 MDPVDDILTTMGLAHRSHHRVTASAPWGVAFSGA--APMRLVVVARGRCVLS-EGGGVVE 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNE---------------------STCIVCGTLRLQH-SA 98 L G+ +++ + LS V ++ +A Sbjct: 58 LGAGDCLVVRGGAEFVLSDVAERVPAPAREVLTAREVAVGGGGAGCEVLVAAFSFDAVAA 117 Query: 99 RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVR 158 L LP+ L ++ + + + ES G + + ++ +R Sbjct: 118 EPLLPRLPDVLRVSL--RGGNLRRVLATVELMVLES-GDGFGSELVLGKLGDVLLVQVMR 174 Query: 159 EWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 W A + L+ L PRL + M H WTV SLA A MSR++FA FR+ Sbjct: 175 AWCAGSGDDRPGWLAALHDPRLSLATRAMHGDLAHPWTVASLAGRAGMSRSAFAAAFRER 234 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G +PLA LT R+ A + + IA VGY ++++ +AF R G +PG +R Sbjct: 235 TGESPLAHLTYWRMHRAKALLREG-RTLQEIAVRVGYETDTALSRAFRRAEGVSPGRWR 292 >UniRef50_B0SFV6 Transcriptional regulator, AraC-related n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SFV6_LEPBA Length = 298 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 27/300 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS +L + + + + +H +TQG+ + +I Sbjct: 1 MDLLSDILFSAGWKNDLLSKGQIFQSFGFHFPCERSGG--FHVVTQGSCYARI-GKQIIP 57 Query: 61 LRPGNVVLLPQNSAHRLSHVD---------------------NESTCIVCGTLRLQHSAR 99 L+ G+++ + + H L N T V + Sbjct: 58 LQKGDLLFITRGVHHELLSDPKAKVVTIERFLHEKNNQKIDQNPVTTFVSVRYEVPDGPV 117 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 + L L P +++ L + I L +E G D + ++ +R Sbjct: 118 HPLLLELPDYILIPYASIQKHHSLEDFIQILSKELELN-LGTDLIVQRLTDIMLYYMIRI 176 Query: 160 WIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 W+ Q + + ++++ WT+ESLA +SRA+ A FRDV Sbjct: 177 WLQQEENSPVGWIKAFHDKTVLYALEKLHNAFSKEWTIESLAKETGVSRANLANKFRDVL 236 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG-EYRE 277 G P+ L KLR++ A Q+F + + + IA++VGYAS SF KA+ R +G +P E++ Sbjct: 237 GIPPMEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGYASAFSFSKAYKRIYGNSPSREWKR 296 >UniRef50_C8QBD0 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QBD0_9ENTR Length = 322 Score = 212 bits (541), Expect = 9e-54, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 128/308 (41%), Gaps = 29/308 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-TGEIF 59 MD LS +L L + Q + G+ W + + S +++ A+ +G + Sbjct: 1 MDLLSDVLQLLSAQSYVTTGQTTGTSWSMRYP--GFSGMKFMAVRKGKIWFRLEADDNWR 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVD----------------------NESTCIVCGTLRLQH- 96 L PG+ V++ +++ ++ E + ++ G + + Sbjct: 59 ALLPGDGVIITRSAPFIMASDPALSPVAAESVPYIRKNGLADYGGEDSLLLAGKMEIDPI 118 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 SA L LP + + + S + L + L ES S PG + + Sbjct: 119 SAEQLLNVLP--VVIPLHSDSESSSTLSWLMSRLHDESLSNRPGSALAGNHLMHLVMIEG 176 Query: 157 VREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 R W +++ + L R+ + + P +W + LA+IA +SRA FA+ F Sbjct: 177 FRSWVLSEAAQLHGWMGALRDARIMRAVTAIHAEPAKSWQLMELAAIAGLSRAGFARCFS 236 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +GT+PL LT R+Q+A++ T P+ +A +GYASES+F F R +G P + Sbjct: 237 ATTGTSPLNYLTHWRMQLASKALRLSTEPIKHLAYRLGYASESTFSTVFRRVYGVAPSAH 296 Query: 276 RERVRQLA 283 R R Sbjct: 297 RAAWRDGP 304 >UniRef50_A7JVV0 Possible AraC family transcriptional regulator n=2 Tax=Mannheimia haemolytica RepID=A7JVV0_PASHA Length = 298 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 126/303 (41%), Gaps = 34/303 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L RLL I C L DWQL + I H ++ G A L+ G+ Sbjct: 1 MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIA-HIISYGQAYLQ-HNGKTHH 58 Query: 61 LRPGNVVLLPQNSAHRLSHV-------------------------DNESTCIVCGTLRLQ 95 L+ G++V P+ + H L + C Sbjct: 59 LKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAGLSQSECDMFCLHFYYD 118 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 H A + SLPE + L+ + L+QE+ + V ++ + + T+ Sbjct: 119 HQAE-LMESLPEMIVFQVAETP-----LKAMLDILKQEAETPNLAVKSVVNSLAVVILTM 172 Query: 156 AVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +RE + N + IL L +I+ +L P H W V+ +A+ H+SRA +LF Sbjct: 173 ILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMAAFIHLSRAQLVRLF 232 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 +P A + K+RLQ AA + + V+ IA S G+ SES F AF +++ TP + Sbjct: 233 NKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSESHFITAFKKQYCVTPSQ 292 Query: 275 YRE 277 YR+ Sbjct: 293 YRQ 295 >UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AR01_TSUPA Length = 289 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 9/278 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALS LL +G + + + A+T G + + + L Sbjct: 17 DALSELLRSVRLRGVRAARFARAHGFTHRASGRR---VVYLAVTAG-LTVTVADQQ-VGL 71 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYN 121 PG+++LL + H + T V G + + ++ + + Sbjct: 72 NPGDLLLLARGDDHSVRGRG--ETEWVRGEFDVDSPVADPVLAVLPPV-IRCAADDPGSQ 128 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT-EKNILSLLLHPRLG 180 WL ++ L E+R PG D + ++I F A+R W A +T L+ + +G Sbjct: 129 WLPLSMDLLLDEARLPRPGGDVMSARILDLLFIHALRHWAATGSTSRPGWLTAAMDQHIG 188 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + P WTV LA IA +SR++FA F + G P + RL AA++ Sbjct: 189 PALTAIHAHPERQWTVAELARIALLSRSAFAARFTRLLGVAPAGYVADRRLDRAAELLRD 248 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 LPV + +VGY SE+ F +AF R FG P +R Sbjct: 249 SALPVGDVGRTVGYGSEAGFSRAFARRFGVPPRAWRRA 286 >UniRef50_A4XUD0 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XUD0_PSEMY Length = 289 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 8/285 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS QG + + L G + H + +G + P Sbjct: 1 MDVLSEFFERTTLQGRLFFAGAVEGTLVLDKPPG---MAFIHVIERGGVDMVQPGLPRVA 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 + +V+ P ++L D ++C + + S + P L V Sbjct: 58 INEPSVLFCPSTCCYQLHVRDPAGLELICASFQFGRSGQQPF---PLGLLETLVFPLAAL 114 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L I L E R+ PG + + F L VR + Q +L L RLG Sbjct: 115 EQLGPVIATLVNEFRNPAPGRSKALNLLFEYVFVLLVRRAVNQGRITSGLLFALQDGRLG 174 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + + P W+VE LA +A MSR+ FA LF +V G P+A +T R+++A M Sbjct: 175 PALLCIHQEPAIQWSVERLADLAKMSRSKFAALFSEVMGMAPMAYVTAWRMKVAQDMMRD 234 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RERVRQLAP 284 +P+ +++++VGY+S++SF + F ++ G PGE+ R+ V + P Sbjct: 235 G-VPIKIVSDAVGYSSQASFSRTFAQQVGLPPGEWLRQAVHEPPP 278 >UniRef50_A7MMI8 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MMI8_ENTS8 Length = 314 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 105/304 (34%), Gaps = 33/304 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ L P+ T K W++ + + A+ QG + + L Sbjct: 3 DPLTDIVALLNPRPTRAKLVEGAGQWRILRESA--GEAFYCAVLQGECLMHINGKAPVRL 60 Query: 62 RPGNVVLLPQ-------------------------NSAHRLSHVDNESTCIVCGTLRLQH 96 G+ +L+P + + G Sbjct: 61 VAGDFMLIPATYTFENTSTGTTPPVDISVPTLLSDGHVRIGATTGPAELLMNVGHCEFDT 120 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 R + +L L L ESR+ PG D + + + + Sbjct: 121 PDRALIVALLPNEILIKGQR-----RFVTLFELLLDESRNRRPGRDVVMTHLLQLLLVES 175 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R T IL L H ++ + + + PG W + LA MSR++F F + Sbjct: 176 LRSDPELAKT-AGILRGLQHEKIATALHLIHDKPGADWQIAHLARECAMSRSAFFATFSE 234 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G +P+ L R+ +A + + + IA GY S S+F AF + G PGE+R Sbjct: 235 TVGMSPMQYLLFWRMSLARKALTSGQDNIEQIALRTGYQSASAFSVAFTKHAGMPPGEFR 294 Query: 277 ERVR 280 + R Sbjct: 295 RQSR 298 >UniRef50_B5ZFX2 Transcriptional regulator, AraC family n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZFX2_GLUDA Length = 315 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 115/308 (37%), Gaps = 28/308 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LSR + L P+ + W + A VI + + G +++ + + Sbjct: 7 IDPLSRTIALLRPRVLAWRVIEARGSWAIAFPANP--VISFGQVISGNPTIKIGSTHTAS 64 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES------------------------TCIVCGTLRLQH 96 L G++ L + N TC V G L+ Sbjct: 65 LTRGDLAFLGTTEPWVIKTGPNPRSIDFMTAIAEPARLMQTDDPSTNVTCFVAGAFVLEA 124 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + L L L +++ V L + + E+ + PG + ++ Sbjct: 125 PNAALVADLIPPL-LPVLHNDVAAERLGMLLGLVGDEATTTRPGRSLILDRLIEIILVET 183 Query: 157 VREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R + + +L+ L +L +Q + WTVE LA A MSR++FA F Sbjct: 184 LRTRPDALPGHAQRLLTALGDQKLARALQIIHGEASPPWTVERLARHAGMSRSAFADRFA 243 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 GT+P+ T+ R+ A M + +P+ IA G+ S S+F AF R G +P Y Sbjct: 244 RTLGTSPINYATQWRINQARSMLASRDMPMAQIARQAGFQSVSAFSTAFSRVVGVSPTAY 303 Query: 276 RERVRQLA 283 + L Sbjct: 304 ARSLEMLP 311 >UniRef50_C9XTT1 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9XTT1_CROTZ Length = 326 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 113/308 (36%), Gaps = 33/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ L P+ T K W++ +G + A+ QG + + L Sbjct: 15 DPLTDIVALLNPRPTRAKLVEGAGQWRILRESG--GEAFYCAVLQGECLMSVNGKAPRRL 72 Query: 62 RPGNVVLLPQ-----------------------NSAH-RLSHVDNESTCIVC-GTLRLQH 96 G+ +L+P H R+ + ++ G Sbjct: 73 VAGDFILIPATYAFETTSAGAAPPVDFSQPTVLGDGHVRIGSTTGPAELLMNVGHCEFDT 132 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + + +L + L L ESR+ PG D + + + Sbjct: 133 PDKALIVALLPSEILI-----QGQRRFITLFELLLDESRARRPGRDVVMMHLLQLLLVES 187 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R A ++ IL L H R+ + + E PG W + LA MSR+SF +F + Sbjct: 188 LRSDPA-LSKTAGILRGLQHDRVATALHLIHEKPGADWQIAQLARECAMSRSSFFAVFSE 246 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G +P+ L R+ +A + + IA GY S S+F AF + G PGE+R Sbjct: 247 TVGMSPMQYLFFWRMSLARKALISGQDNIEQIALRTGYQSASAFSVAFAKHAGMPPGEFR 306 Query: 277 ERVRQLAP 284 R R P Sbjct: 307 RRSRTARP 314 >UniRef50_D1XPD5 Transcriptional regulator, AraC family n=1 Tax=Streptomyces sp. ACTE RepID=D1XPD5_9ACTO Length = 327 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 107/316 (33%), Gaps = 47/316 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD S L G++ + L W L G + + GA + Sbjct: 15 MDITSELFRGVRAHGSLFGSSTLSPPWSLHFVDGPP--LTLCTVLTGAGWVVPDGHPPER 72 Query: 61 LRPGNVVLLPQ-----------------------------NSAHRLSHVD-------NES 84 L + +++ + HRL + + Sbjct: 73 LGAHDTIVVRGPSTFTFVDDPATSVEPLICSEECSTPEQGGTRHRLGWHEPGEDDAVGGT 132 Query: 85 TCIVCGTLRL-QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDA 143 T +V G L +R L SLP L + + L E PG Sbjct: 133 TTLVVGAYPLRSEISRRLLDSLPVVLRVPAGGVG------DPVLDHLAAEVARDEPGQQV 186 Query: 144 LCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 + ++ +R W+ + S P G ++ + P WTV +LA Sbjct: 187 VLDRLLDWMLVCTLRTWLDGPGHRPPAWWSAQKDPVAGETLRLLHAEPAAPWTVAALARR 246 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF-SRETLPVVVIAESVGYASESSFH 261 +SR++ A+ F ++ G PL LT R+ +AA + + + V +A +VGY +F Sbjct: 247 TGVSRSTLAKRFTELLGEPPLTYLTHWRMTLAADLLTEQPSATVASVARTVGYTDPFAFS 306 Query: 262 KAFVREFGCTPGEYRE 277 AF R G TP +R Sbjct: 307 VAFKRVRGTTPRAHRH 322 >UniRef50_C5CWM4 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CWM4_VARPS Length = 308 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 122/299 (40%), Gaps = 29/299 (9%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MD L + + + G+ W + GE + R+ + +G+ LE P + Sbjct: 1 MDPLDDVFAAMRVRSALYARLEAGAPWGVSLAGGESA--RFGLVVRGSCLLEAPGVAQPV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNESTC------------------------IVCGTLRLQ 95 L G+ +L + + L N T ++CG Sbjct: 59 PLAAGDCYVLAHGTPYVLRDHPNTPTVSCASVVRDRIGGVVELGGTGTAASVICGWFHFD 118 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 A L L L + + L+ + L E+ G L S++ F Sbjct: 119 QRAARPLLDLLPVLLHVKMEEARALA-LQGTLQLLAMETGEPGLGSGLLVSRLADIVFVQ 177 Query: 156 AVREWIA-QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 AVR +A ++ L+ L R+G ++ M + WTVE+LAS A +SR++FAQ F Sbjct: 178 AVRAHVAAHGESQTGWLAALADARIGPALRAMHKDMARDWTVEALASTASLSRSAFAQRF 237 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 R+ G PL LT+ R+ A M + V IA +VGY SE++F KAF R G PG Sbjct: 238 RERVGQAPLEYLTQWRMFKAGNMLGQGHAAVGAIAGAVGYESEAAFSKAFKRRMGMAPG 296 >UniRef50_A0KNU2 Transcriptional regulator, AraC family n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KNU2_AERHH Length = 267 Score = 210 bits (534), Expect = 6e-53, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 20/260 (7%) Query: 39 IRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHR-------------------LSH 79 + +H L +G ++ G+ LRPG+++LLP H L Sbjct: 1 MPFHLLMKGEIRVSTAQGDDVVLRPGDLLLLPGGEPHTIWREGDALTLAEPGDGLLPLRG 60 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 + +CG R Q R L + P+ S L + + QE Sbjct: 61 DGGDQVEFLCGEYRYQGPLRPLLLDALPSPLCIPLLASESQQALSLVLSLIHQELLREQQ 120 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G A+ + + + +R + + ++ L PRLG +Q ML P H W+V+ L Sbjct: 121 GSGAVLTALSQVLLAMGLRAHASDPHGALGLVGALQDPRLGRSLQAMLADPAHPWSVDEL 180 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRET-LPVVVIAESVGYASES 258 A++A MSRA++ + FR G + + ++R+ AA++ LP+ +A+ VGY SE+ Sbjct: 181 AALAAMSRATYFRHFRQRLGCSVWEFMVRVRMVRAAELLRHPDQLPLGEVAQRVGYQSEA 240 Query: 259 SFHKAFVREFGCTPGEYRER 278 SF KAF + G PG +R++ Sbjct: 241 SFAKAFKQSSGMAPGRFRQQ 260 >UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XTB5_KLEP3 Length = 301 Score = 210 bits (534), Expect = 6e-53, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 137/302 (45%), Gaps = 27/302 (8%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD+LS LL L AP+ ++ +C G WQ H V+ WH + +G +L + G+ Sbjct: 1 MDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLNV-GGQTHH 59 Query: 61 LRPGNVVLLPQNSAHRLSH------------------------VDNESTCIVCGTLRLQH 96 LR G+VVLLP S H + + ++CG Sbjct: 60 LRAGDVVLLPHGSPHLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLCGEFYFGP 119 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + + + L + + L + L +ES + PG A+ + T L Sbjct: 120 HVSWLFSEASTLIHL-HTDAREDCPELDALLNILVRESLAQRPGGSAIVRSLGDTLLVLL 178 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + + +L L+ RL + ++ P WT+ES+A+ A +SRA+FA+ F Sbjct: 179 LRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATFARHFAR 238 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLP-VVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V TP A L++LR+ +AA++ E + VIAE G+ S +SF K F +G TPGE+ Sbjct: 239 VYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYGVTPGEW 298 Query: 276 RE 277 R Sbjct: 299 RR 300 >UniRef50_C7Q7L5 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q7L5_CATAD Length = 331 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 112/302 (37%), Gaps = 28/302 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGA-AKLEMPTGEIFT 60 D L L + + + V G DW + A ++ + + +G + TGE Sbjct: 21 DPLCAALAVADARAAMSGAFVAGGDWAVRLHA--PDRLKVNCVMRGTPVLVRQDTGEQLR 78 Query: 61 LRPGNVVLLPQNSAHRLSHVD-----------------------NESTCIVCGTLRLQHS 97 L PG+V++ + L E V G + L Sbjct: 79 LAPGDVIVSDGALPYVLCSDPSIEPHPSGWLATDPRTGFRRIGHGEDVMCVAGHVDLSRD 138 Query: 98 ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 L S L P + E LR I L E + PG A I F + Sbjct: 139 GGGLLRSALPNLLHIP-GDAPEATPLRRLIEQLLDEMTTRRPGAPAAMDHIAQLIFLHVL 197 Query: 158 R-EWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 R L L PR+ + M P W +E LA A +SR +FA FR Sbjct: 198 RISLTTTATLPPGWLRGLADPRISPALHLMHRDPARPWRLEELAQAAALSRTAFAVRFRA 257 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 G PL L R+ +AA+ R+T PV V+A VGY SES+F AF R G +P YR Sbjct: 258 TVGVPPLTYLLTWRMSLAARALRRDTTPVAVLAREVGYGSESAFSNAFKRAVGTSPRNYR 317 Query: 277 ER 278 R Sbjct: 318 NR 319 >UniRef50_Q5YVF5 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5YVF5_NOCFA Length = 328 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 110/319 (34%), Gaps = 47/319 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L LL +G + ++ W + + + + A+ QG + Sbjct: 1 MDVLESLLHETRARGAVLCQSMMDPPWGVRFS--DGAALTLVAMAQGGCWVRADGHPPVR 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVC------------------------------- 89 L PG+ ++ + LS S + Sbjct: 59 LDPGDAAIVRGPHPYTLSDSPTTSPRLFVEAADRCTDLGGREVPESAYIGPRVWGDRPDA 118 Query: 90 -------GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 A L +LP + + + L +E + PG Sbjct: 119 ATVVLTGAYPARADVAERLLAALPRVVRVPAEPDPAPE------MALLLREISADRPGQQ 172 Query: 143 ALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++ +R W+ + + L P G ++ + + P AWTV LA Sbjct: 173 VMLDRLLDLLLVSTLRCWLDDLGADGPPWYRALGDPVAGPALRAIHDDPAAAWTVAELAR 232 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 A +SRA+FA+ F ++ G P+ LT R+ +AA R + IA +VGY+ + Sbjct: 233 RAGVSRAAFARRFTELVGEPPMTYLTGWRVALAADRLRRTDDTLGAIARAVGYSDGYALS 292 Query: 262 KAFVREFGCTPGEYRERVR 280 AF R G PGE+R R Sbjct: 293 AAFTRVKGLRPGEFRRACR 311 >UniRef50_B0RCB3 Putative AraC-family transcriptional regulator n=1 Tax=Clavibacter michiganensis subsp. sepedonicus RepID=B0RCB3_CLAMS Length = 324 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 123/306 (40%), Gaps = 30/306 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIFT 60 D LS +L L + + W++ + +++ A+ G+A+L Sbjct: 4 DRLSEVLDLIQVRAVVSGGSAARGRWRI--HSAIDEDLKFIAVVVGSARLTADGLDAPIE 61 Query: 61 LRPGNVVLLPQNSAHRLSHVDNEST------------------------CIVCGTLRLQH 96 L G+V +L + L + ++ G + L Sbjct: 62 LAEGDVAVLNGRAWLTLEGGSGDGPLTHVDPPAPGTPLRDADLRDPHADVLIGGRVDLDP 121 Query: 97 SARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 R LTS LP + S +R + + +E + G Q Sbjct: 122 VGRELLTSVLPPVAHI--DRRSPVGADVRAHVQRISRELAADRVGSAFAIRQYGQLLVLD 179 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 VR + + L LL RL + + P AW+++SLA + MSR+SFAQ FR Sbjct: 180 IVRASMLDPDVPAGWLRLLADERLRPALAVIHAQPARAWSLDSLARASAMSRSSFAQRFR 239 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +V+GTTPLA L + R+ +A + V +A ++GY SES+F AF R G P Y Sbjct: 240 EVAGTTPLAYLIEWRMLLARRELRSGDRRVGELAFALGYGSESAFSSAFKRHTGEAPVTY 299 Query: 276 RERVRQ 281 R R+R+ Sbjct: 300 RTRIRR 305 >UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=Actinobacteria (class) RepID=D1AA08_THECD Length = 332 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 112/306 (36%), Gaps = 32/306 (10%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDAL+ LL +G VL W + + + + A+ +G A GE Sbjct: 1 MDALASLLDGPRARGAFLLKAVLDPPWAMRV--QDRAPLTLVAMLRGEAWAIPQAGEPVK 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVC--GTLRLQHSARYFLTSLPETLFLAPVNHSV 118 G V+++ + ++ IV G + R L + Sbjct: 59 AGAGEVMIIRGPDPYVVADDPATPPGIVIHPGGRCSDPTGRDLHDELTLGVRTWGNAPDG 118 Query: 119 EYNWL---------------------------REAIPFLQQESRSAMPGVDALCSQICAT 151 + L + L+QE PG + + ++ Sbjct: 119 AHRMLVGTYRMSGEIGARLLAALPPLLTVEPESPLVALLEQEMTRDEPGQEVMLDRLLDL 178 Query: 152 FFTLAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 ++R W + + L P +G ++ M + P WTV +LA +SRA+ Sbjct: 179 LLITSLRTWFTRRRDAAPAWYRALADPVVGRALRMMHQDPARPWTVAALAGRTGVSRAAL 238 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 A+ F ++ G P+A LT RL +AA + V +A VGY S +F AF R G Sbjct: 239 ARRFTELVGEPPMAYLTGWRLALAADLLREPEATVASVARRVGYGSPFAFSAAFKRVRGV 298 Query: 271 TPGEYR 276 +P +YR Sbjct: 299 SPRQYR 304 >UniRef50_A9C0Z2 Transcriptional regulator, AraC family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C0Z2_DELAS Length = 356 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 26/299 (8%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 + LL + ++ W + +H + G L +P L+ Sbjct: 61 VIDGLLNGLQWRASVFHVGQYCGRW--RASTAGRARASFHLILDGRCWLHLPGQPSVELQ 118 Query: 63 PGNVVLLPQNSAHRLSHVDNE-------------------STCIVCGTLRLQHSARYFL- 102 P + V L ++ H +S + T + CG + R L Sbjct: 119 PRDGVFLSRDVPHFISPYADPDMACAPQAMRPATGDAGIGETALACGFFTFEGPMRGLLV 178 Query: 103 TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA 162 + P+ L L +H++ + ++ E+ A+ ++ F +R+ Sbjct: 179 DAFPDHLVLRGDDHAMSGASM--LFDLMRAEALRTGTEPSAVMDRLVGLLFFYGLRQLAH 236 Query: 163 QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTP 222 + I SLL P ++ ++L P W+V +A+ +SRA+F + F + G P Sbjct: 237 GDARARGIWSLLRRPGFAPLVAELLREPARNWSVADMAARVCLSRATFFRQFAEACGQPP 296 Query: 223 LAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY-RERVR 280 L LR+Q+AA+ ++ + +AE+VGY S ++F +AF R G PG + R + R Sbjct: 297 QQFLLLLRMQLAARRLAQGEA-IGQVAEAVGYESYAAFSRAFKRVMGEQPGAWQRAQAR 354 >UniRef50_D1BJS6 DNA-binding domain-containing protein, AraC-type n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJS6_SANKS Length = 338 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 120/339 (35%), Gaps = 59/339 (17%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL +G V+ W + + + + + +G +L + G Sbjct: 1 MDPLSGLLDHPRARGAFTLRVVMDPPWSVDV--RDEAALTLVVVLRGGGRL-VAGGATTE 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPV--NHSV 118 LRPG+V L+ + + H+ T T+ P + + P + Sbjct: 58 LRPGDVALVRGPEPYVVEHLTAPRPSPTPSTDAATRPPARPATTAPTSAVIGPDQSCSTP 117 Query: 119 EYNWLREAIP----------------------------FLQQES---------------- 134 + L A+ L E+ Sbjct: 118 DGTDLHLAMAHGTRTWGNSADGADSLLVATYQGAGEVGRLATEALPRVAHVPAGSGPGTT 177 Query: 135 ---------RSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQ 184 + G + + ++ VR W++ + LS P + ++ Sbjct: 178 LVDLLVGEVAADGVGQETVLDRLVDVLLVTTVRAWLSAHPDDAPGWLSAPHDPVVHGALR 237 Query: 185 QMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLP 244 + + P WTV +LA +SRA+FA FR G+ P+A LT+ RL +AA + + Sbjct: 238 AIHDRPAEPWTVVALAREVDVSRATFAARFRAQVGSPPMAYLTRWRLTLAADLLTTTDRT 297 Query: 245 VVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 + IA VGY S + AF ++ G +PG YR + Q Sbjct: 298 LASIATDVGYGSPFALSAAFSQQMGTSPGRYRRQQTQAG 336 >UniRef50_C9PQP0 AraC family transcriptional regulator n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PQP0_9PAST Length = 275 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 122/282 (43%), Gaps = 11/282 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS+L + + L + E + H + QG+ L++ Sbjct: 1 MDALSQLFHYFPFRTDLFFIGKLCQIAKF----QEENKGYLHFIRQGSFLLQIHNHPPKR 56 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFL-TSLPETLFLAPVNHSVE 119 + ++L N+ H + + +E I C + + ++ +T+ L E Sbjct: 57 IDKPCIILSASNTLHNIHPLSDE-LDIFCISFDFGSGVLNPITNTIKDTVIL----DISE 111 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 L + QES S G A+ + A +R + Q + + +L L L Sbjct: 112 QPDLAVIASQIFQESESQEYGFQAIIHHLSAYLTLQVIRCCLKQNHFKTGLLKGLTDKYL 171 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 V+ M + P + W ++ LA+ A MSR+ FA F+++ G +P+ LT R+ +A + Sbjct: 172 APVLLDMHQRPEYNWKLDELATKAAMSRSKFAVYFKNILGISPMEYLTHWRITLAQTLLL 231 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + + +A+ VGY+ ++ +AF+R G +P ++ + ++ Sbjct: 232 KG-KSLTQVADDVGYSHNAALTRAFLRIVGKSPTDWLKLNKK 272 >UniRef50_Q0AK28 Transcriptional regulator, AraC family n=1 Tax=Maricaulis maris MCS10 RepID=Q0AK28_MARMM Length = 320 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 31/296 (10%) Query: 14 QGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNS 73 GT+ V+ + W + + + V +T G A L T E L+PG++ LL + Sbjct: 25 SGTLYCQGVMTAPWGIDVPSLDDQVGLL-IITAGTAHLATATDETRLLQPGSLTLLTRGQ 83 Query: 74 AHRLSHVDNESTCIVCG----------------------TLRL------QHSARYFLTSL 105 +L+ S + + R L Sbjct: 84 PMQLASAPGASLTALEDLPVEPVTRRFERVFHGGGGAETRFTFALMKIEDPTTRQLFREL 143 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQ-V 164 PE++ + + VE WLR + + +E+R PG + L +++ +R W+ Sbjct: 144 PESIEVNGWDALVE-TWLRSTVQLISEEARLMRPGSETLITRLADILVIQLIRRWLEHAG 202 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 E+ L+ L P LG + + P W+++SLA IA MSR++F F + T P+ Sbjct: 203 PGERGWLAALHEPGLGRALAAIHTDPAINWSLDSLAGIAAMSRSAFCARFTTMLDTAPMK 262 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +T+ RL A + + + I+E GY S+++F +AF + +G PG R + Sbjct: 263 YVTRHRLARAREALVQTQDSLADISERYGYGSDAAFSRAFKKYYGMAPGRVRAGRQ 318 >UniRef50_A6G0H9 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G0H9_9DELT Length = 321 Score = 206 bits (525), Expect = 6e-52, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 34/292 (11%) Query: 18 DKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL 77 +L + W L + + +G A L GE L PG+ LL Q AH L Sbjct: 28 YCQSLLAAPWGLAVPESARGAA-YVFVARGRATLR-AAGERVALGPGDFALLAQGDAHEL 85 Query: 78 SHV--------------------------DNESTCIVCGTLRLQHSARYFLTSLPETLFL 111 + T ++ G L + +A L +LP L L Sbjct: 86 ASGKRTPVYPLSELEWDSVLGRCIVRSGGAGAVTHLLTGGLDFELNA--LLPALPPVLSL 143 Query: 112 APVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTE-KNI 170 + +WL L E+ G + + S++ A+REW+ + E + Sbjct: 144 SAEQAP---DWLAGLSALLVDEAAQPGAGSELVLSRLAELLAVGAIREWLDGGDEESPGL 200 Query: 171 LSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLR 230 L L P + + + P WTV SLA +SR++FA F+ G +P+ T+ R Sbjct: 201 LRALRDPPIRRSLDLLHRDPREPWTVASLAKAVGLSRSAFAARFQACLGVSPMRYYTRWR 260 Query: 231 LQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 + A Q E V +A+++GYAS ++F +AF G +PG+ R R R+ Sbjct: 261 MGHAEQWLRDEQRSVEEVADALGYASRAAFTRAFKSALGHSPGQARRRARER 312 >UniRef50_C4DJ08 DNA-binding domain-containing protein, AraC-type n=3 Tax=Actinomycetales RepID=C4DJ08_9ACTO Length = 304 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 105/302 (34%), Gaps = 34/302 (11%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNV 66 +L +G L W + G + +G L + G L G+ Sbjct: 1 MLGGIRAEGACVNQVSLEPPWAIRFAEG--GALTLLTAVRGEGVLVLADGTEHKLNEGST 58 Query: 67 VLLPQNSAHRLSH--------------------------VDNESTCIVCGTLRLQ-HSAR 99 L+ + L+ + +T ++ GT R Sbjct: 59 ALVRGDEPFHLADSAAAMDGPIKVLSGNGYETVCELSLDESDATTAVIVGTYRTTCTRQE 118 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQES----RSAMPGVDALCSQICATFFTL 155 L +LP L + + +L + R PG AL ++ Sbjct: 119 RLLRTLPSALVVDEDTTDATKPEVATLGGWLDAVTDALRRRRGPGGQALIDRLLDWGLVC 178 Query: 156 AVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 + W + P G ++ + P H WTV +LA+ A +SRA A+ F Sbjct: 179 TLACWFEHQGADAPAWYRGAQDPVAGPALEAIHNRPQHLWTVGALAAEAKVSRAHLAKRF 238 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 +V G PL LT+ R+ A + S + V +A +VGYA +F AF R G +P + Sbjct: 239 AEVMGQPPLKYLTEWRMYTAEDLLSDSDMSVAEVARAVGYADPFAFSTAFKRHRGTSPRQ 298 Query: 275 YR 276 YR Sbjct: 299 YR 300 >UniRef50_A9C071 Transcriptional regulator, AraC family n=3 Tax=Comamonadaceae RepID=A9C071_DELAS Length = 330 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 123/311 (39%), Gaps = 36/311 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGA-AKLEMPTGEIF 59 MD LS +L + + + L + W L ++IR + +GA +++ + Sbjct: 1 MDVLSEVLDICRSERAVTARFALTAPWSLKSTGVTGAMIR---MARGAPYWIQVEGMQPL 57 Query: 60 TLRPGNVVLLPQNSAHRLSHV-------------------------------DNESTCIV 88 + PG++V+LP +AH ++ E+T + Sbjct: 58 RVEPGDLVMLPMGAAHVVASDLGMACELFSRLISRHAEGPQDENPLVFSHGGGGEATDMF 117 Query: 89 CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQI 148 L R+ + + L + + L + L E+ + PG +++ Sbjct: 118 SALLWFSAYCRHSVFRILPPLIHIRASDLPLADCLAATMQSLTLETLARRPGWRLSAARM 177 Query: 149 CATFFTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSR 207 +RE +A+ + L L + I M P +W+VE+LA+ A MSR Sbjct: 178 GELLLVNILREHLAREAAVGEGWLRGLGDACIARTIVCMHREPQRSWSVETLAAEAGMSR 237 Query: 208 ASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVRE 267 F+ F+ + G TP+ LT R+ +AAQ L IAE+ GY S F +AF R Sbjct: 238 TRFSMRFKQLVGATPIGYLTAHRMALAAQQMEAGGLSSARIAENAGYDSPKVFARAFRRW 297 Query: 268 FGCTPGEYRER 278 G TP + + Sbjct: 298 SGHTPKAWLAQ 308 >UniRef50_A4W931 Transcriptional regulator, AraC family n=2 Tax=Enterobacteriaceae RepID=A4W931_ENT38 Length = 340 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 120/307 (39%), Gaps = 33/307 (10%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 +S LL+ +G + GS++ + + +H + G A L G + L+ Sbjct: 26 LISELLLEMRLRGVQYRRLQTGSEFGIGF-SNRQGHAYFHYIAVGTALLRTNDGALHELK 84 Query: 63 PGNVVLLPQNSAHRLSHV------------------------------DNESTCIVCGTL 92 G++V +PQ H+L ST + G + Sbjct: 85 AGSMVFMPQGEEHQLISDVGCAIHHIDTLGSAPLGEAVSGINTCPSTHPTPSTVLFYGCM 144 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 L L + N Y L + ++ E S G + +++ Sbjct: 145 EFDLGGMQGLGKLMPQAIVVEANEK-IYPGLVPILGAMKFEICSGRAGFAGILARLAEVA 203 Query: 153 FTLAVREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFA 211 + VR WI + +++ L PRL I + W+V LA+ +H+SR+ FA Sbjct: 204 AAMIVRGWIENGSEKAAGLIAALRDPRLARAILTIHRDTSREWSVAELAAQSHVSRSVFA 263 Query: 212 QLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCT 271 + F + G P ++R+++A + + + +A +GYAS+++F +AF R G Sbjct: 264 ERFTSIIGIPPQRYAREVRMRLAGHWIIHDKISIDTVALRLGYASQAAFSRAFKRINGYP 323 Query: 272 PGEYRER 278 PG R+R Sbjct: 324 PGAMRQR 330 >UniRef50_A6WBY5 Helix-turn-helix-domain containing protein AraC type n=8 Tax=Actinomycetales RepID=A6WBY5_KINRD Length = 323 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 109/317 (34%), Gaps = 48/317 (15%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDA S L+ G++ + L + W L + + + + GA + Sbjct: 1 MDAFSDLMRGVRAHGSLFASSTLTAPWSLHFV--DGAPLTLCTVLGGAGWIVPEHEAAVR 58 Query: 61 LRPGNVVLLPQ-----------------------------NSAHRLSHVD---------N 82 + + VL+ + HRL D Sbjct: 59 VGAYDTVLVRGPGTFTFVDEVGTTAVPVVCGVDCATPEQGGTRHRLGWHDPGAPDDDGNG 118 Query: 83 ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 +T +V +R L +LP L + + + L E PG Sbjct: 119 TTTLLVGAYPARGEISRRLLEALPVVLRVEAGGRA------DPVLEHLAAEVAVDAPGQQ 172 Query: 143 ALCSQICATFFTLAVREWIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + ++ +R + + P G +Q + P WTV +LA Sbjct: 173 VVLDRLLDWMLVCTLRTHFDRPGGRAPAWWTAQRDPVAGRALQLLHAEPAAPWTVAALAG 232 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR-ETLPVVVIAESVGYASESSF 260 +SRA+ A+ F D+ G PL LT+ R+ +AA + L V +A SVGYA F Sbjct: 233 RVGVSRATLAKRFSDLVGEPPLTYLTRWRMTLAADLLLDRPELTVAGVARSVGYAEPFGF 292 Query: 261 HKAFVREFGCTPGEYRE 277 AF R G +P E+R Sbjct: 293 SAAFKRVRGLSPSEFRR 309 >UniRef50_A6T1U9 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A6T1U9_JANMA Length = 281 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 9/278 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS LL + + + L GA I H L G+ L P + Sbjct: 1 MDRLSNLLSRFGVRANLFYDGDLCGSASYD-GAERRGYI--HLLQAGSVTLLGPDRKDLQ 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLT-SLPETLFLAPVNHSVE 119 L +++ +P+ + H+L +++ ++C ++ + L+ SLP+ L LA + Sbjct: 58 LTRPSLIFMPRPAKHQLFAGESDGAKLLCASMEFEGGIDNPLSASLPDCLVLALDD---- 113 Query: 120 YNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRL 179 L + + ++ E+ + G +A ++ L +R + +++ L RL Sbjct: 114 LPMLADTLEWMFAEAANVHCGREAALERLFELLIILLLRYLLDHHQLRTGMMAGLADMRL 173 Query: 180 GAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFS 239 + QM P HAW++ LAS ++MSRA++A F+ V G TP L R+ +A ++ Sbjct: 174 ARSLLQMHNSPEHAWSIAELASESNMSRAAYAVHFKRVIGQTPADYLLSWRVSLAQKLMR 233 Query: 240 RETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + +IA VGY S S+ +AF R+ G +P ++ + Sbjct: 234 EG-RSITLIAAQVGYESPSALSRAFRRKTGLSPRDWLK 270 >UniRef50_Q3BT36 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q3BT36_XANC5 Length = 280 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 9/279 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ LL + + + G H + +G P E + Sbjct: 3 DRLAGLLRHYSLSARVFHSGAFCGQHHYAAPHG-----YIHLVRRGPITARSPVHEDLLV 57 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYN 121 +++ P+ ++HR ++ +C + L S L ++ L P+ + Sbjct: 58 TEPSLLFYPRVASHRFVAAPGDTAEQLCAEVDLGASTGNPLAMALPSMLLIPL---ADLP 114 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 L + L E+ G A ++C +R + +L+ L P+L Sbjct: 115 GLGPTLELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGATGLLAGLADPKLAR 174 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 I M + P AW++E+LA+ A MSRA FA F+D G TP L R+ ++ + + Sbjct: 175 AITAMHDAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDYLADWRMNVSCTLLKQG 234 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 PV V+A+ VGY S ++ +AF GC P ++ + R Sbjct: 235 -RPVAVVADRVGYGSPNALARAFRVRMGCAPRDWLAQQR 272 >UniRef50_Q15XK9 Transcriptional regulator, AraC family n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15XK9_PSEA6 Length = 316 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 118/318 (37%), Gaps = 38/318 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L +L +G L A + T+G +E+ Sbjct: 1 MDLLGDVLCSLNVFSHSIGIFKIGGSTHLHLTAMPTNFAFIFTSTEGECWIEVDCCPPRQ 60 Query: 61 LRPGNVVLLPQNSAHRLS----------------------------------HVDNESTC 86 L G+ VL+ AHR +S+ Sbjct: 61 LHIGDSVLILGGRAHRFGASLASEQKSFETLWAANGLPKFGETRDKPIYLSVDETEDSSS 120 Query: 87 IVCGTLRLQHSARY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 ++ + A + L LP +F++ S WL A F Q+E PG A Sbjct: 121 LLSLAFTVDEPAHHSLLKLLPPYIFVSK--GSQLDTWLSAAFGFCQRELSHNTPGFSATA 178 Query: 146 SQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 F VR ++ + + + L PR+G + M V ++A Sbjct: 179 MNFTNLIFGEFVRSYLNSADLPHESWMRGLSDPRIGRALAMMHTRTAEQLMVSTMAKEVG 238 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MSR SFA++F+ + G +P+ L R+ AAQ + I E +GY SE +F +AF Sbjct: 239 MSRTSFARIFKTLVGQSPIDYLINCRMHKAAQYLLEGNHSIGKITEMIGYHSERAFRQAF 298 Query: 265 VREFGCTPGEYRERVRQL 282 ++ FG +P +++++ +++ Sbjct: 299 IQRFGLSPSQFKKQQQKI 316 >UniRef50_C1YVX3 DNA-binding domain-containing protein, AraC-type n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YVX3_NOCDA Length = 318 Score = 204 bits (519), Expect = 3e-51, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 113/319 (35%), Gaps = 39/319 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L LL +G V+ W + + + + +T G A + GE Sbjct: 1 MDPLVHLLDGPRARGAFTLRTVMSPPWGIDI--RDEAALTLVVVTSGRAWVA-ANGEEAE 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCG-------------TLRLQHSARYFLTSLPE 107 PG++VL+ + ++ + + + H + P+ Sbjct: 58 AGPGDLVLVRGPEPYVIADSPGREPTVTALPGARCVARDGAEVHVSMSHGVGTWGND-PD 116 Query: 108 TLFLAPVNHSVEYNWLR--------------------EAIPFLQQESRSAMPGVDALCSQ 147 V ++ + + + L +E + +L + Sbjct: 117 GTDTMVVGAYLDDSEVGRLALAALPSLAVLPEGRVDPALVELLAREITTGHVAQTSLNDR 176 Query: 148 ICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMS 206 + +AVR W+ + N L+ P + ++ + E WT+ESLA +S Sbjct: 177 LLDCLLVMAVRAWLEDNPDSAPNWLTARSDPVVARALELVHERVADPWTLESLAGECAVS 236 Query: 207 RASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF-SRETLPVVVIAESVGYASESSFHKAFV 265 RA+ A F+ GT P+ L RL +A + + L + +A VGY S +F AF Sbjct: 237 RATLAARFQRAVGTPPMTYLRTWRLTVACDLLTASPGLGLEAVAARVGYGSAFAFSSAFK 296 Query: 266 REFGCTPGEYRERVRQLAP 284 G +P YR + P Sbjct: 297 NHTGASPSAYRAARAERVP 315 >UniRef50_A1T3N4 Transcriptional regulator, AraC family n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1T3N4_MYCVP Length = 307 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 107/305 (35%), Gaps = 29/305 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS + L G + + DW + + G +L L Sbjct: 4 DQLSDVFDLIEVAGMVSGGFSVRGDWFCRLEIKDPVKMIGVVC--GRVRLATDGYGPIDL 61 Query: 62 RPGNVVLLPQNSAHRLSHVDNEST-------------------------CIVCGTLRLQH 96 PG+V +L + L + I+ G + + Sbjct: 62 EPGDVAILNGCTQVVLKGGPGAAPATKLDVEQSGDAFVRVDGAECGEADVIIGGHVDVNP 121 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + L + L + E L + + E G Q Sbjct: 122 TGAALLAQALPRVGLVRASAD-EATNLHAILNRVLDEVTGNRIGSAFAVQQQGQLLLLEV 180 Query: 157 VREWIAQVNT-EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R ++AQ + L LL RL + M + PG W +E LA A MSR SFA+ FR Sbjct: 181 LRAYLAQADDLPPGWLRLLTDERLRPAVTSMHDEPGKPWRLEELARAAAMSRTSFAERFR 240 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 V+G PL L R+Q+A V +A +GY SES+F AF RE G +P Y Sbjct: 241 AVAGVPPLTYLNAWRMQLARHALRDSDTRVGPLAFRLGYTSESAFSNAFKREVGMSPLRY 300 Query: 276 RERVR 280 R V+ Sbjct: 301 RASVQ 305 >UniRef50_Q7UL84 Probable araC family transcription regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UL84_RHOBA Length = 454 Score = 203 bits (517), Expect = 6e-51, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 123/296 (41%), Gaps = 19/296 (6%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDW---------QLPHGAGELSVIRWHALTQGAAKL 51 MD L+ L + ++++ G W P A + ++A+ G + Sbjct: 14 MDVLADFLSVAGMVAHLEESLSGGKTWVHQVASIPRSSPTVAVAAQRLSFYAVVSGQIRF 73 Query: 52 EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYF-LTSLPETLF 110 E +L G+ + + HRL +E T + G + + + +L T+ Sbjct: 74 TSAAAE-HSLNSGDTIFAIEGQEHRLESR-SEDTRVTTGQIEFTSGSIGLSVLNLASTII 131 Query: 111 LAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE---WIAQVNTE 167 + + S+ + L E G ++ I F A+R + Sbjct: 132 VRSNDESLSSE----LVRRLGTEIEEQRGGWKSVSLGIVNALFIAALRSGGNCSKSNSES 187 Query: 168 KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLT 227 L + +GA ++ M E P H WTV LA+ +SR++FA F+ ++G PL LT Sbjct: 188 NGWLRAMADDEIGAALKLMHERPEHRWTVAELANELSVSRSAFAARFKTITGRPPLEYLT 247 Query: 228 KLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 RLQ AA + + + + GY SE++F KAF REFG +PG+ R + + + Sbjct: 248 WWRLQRAAARLRTGDVTLTEVTRNSGYQSEAAFGKAFRREFGISPGQLRRQAKAKS 303 >UniRef50_B7VTG6 Transcriptional Regulator, AraC family n=7 Tax=Vibrionales RepID=B7VTG6_VIBSL Length = 279 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 14/283 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD LS+L+ + + + + L A + H L G L E Sbjct: 1 MDLLSQLMEHFSIRTGVFYSGNLCG--VSSFNAQQGKEGHLHVLRAGELTLSGAHMECRQ 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRL-QHSARYFLTSLPETLFLAPVNHSVE 119 L ++ LP ++ H + V E +VC + L++LP+ + + + Sbjct: 59 LSQPCIIYLPNSTPHVIEGV-GEGAELVCANVEYRSGQMNPLLSALPDMIVIPF----ED 113 Query: 120 YNWLREAIPFLQQESRSAMPGVDA-----LCSQICATFFTLAVREWIAQVNTEKNILSLL 174 L I L +ES A G + L ++ L R I Q + + S L Sbjct: 114 APNLMPVIEVLFRESGQASSGQQSSGQQYLMDKLSDALMALIFRHLIEQQKIDSGVFSAL 173 Query: 175 LHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIA 234 HPRL AV+ + +P ++V +AS+A MSR F + F+ G TP + K R+ +A Sbjct: 174 AHPRLAAVVTAIHRLPARHFSVAEMASLAAMSRTQFIEAFKREVGETPGDYVQKWRVSVA 233 Query: 235 AQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + + P+ +A+ VGY S S F +AF G +P ++ + Sbjct: 234 QSLLLQ-NKPINWVADEVGYNSYSGFSRAFQHVSGVSPRQWLK 275 >UniRef50_A6VS98 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Proteobacteria RepID=A6VS98_MARMS Length = 308 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 34/301 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS ++ L P+ K W++ E+ + + +G+ + + E Sbjct: 2 IDPLSSIVTLLQPKAAFSKVVHAAGKWRIRR--EEIGNPFYCVVLEGSCEFTLKGDEPIY 59 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES--------------------------TCIVCGTLRL 94 L G+ VL+P+ A ++ + ++ G + Sbjct: 60 LTAGDFVLVPEAHAFTVASSHPPALTDADTVPIKTAASTYFAGEAEQELNAHLLIGHCQF 119 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 + L SL L H E L + + +ES + PG D++ +++ Sbjct: 120 EAPDSKILISLLPKLV-----HLREAKRLATLVELVIEESLAQRPGRDSVLARLLEILLI 174 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A R + +L L RL I+++ + AWT++ LA A +SR+SF Q F Sbjct: 175 EAFRTKMDT-PEVPGLLVGLADERLAMAIRKIHQDVSKAWTIDQLAKEASLSRSSFFQRF 233 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 G TP+ + R+ IA + R+T + IAE +GY S S+F AF + G P + Sbjct: 234 SKAVGYTPMEYVIAWRMAIAKDLLRRQTFTMATIAERIGYQSASAFSSAFSKYTGQAPSK 293 Query: 275 Y 275 + Sbjct: 294 F 294 >UniRef50_A0Z8C5 Transcriptional regulator, araC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z8C5_9GAMM Length = 337 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 115/332 (34%), Gaps = 57/332 (17%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPT-GEIF 59 MDALS LL I +G W + + +H + QG L ++ Sbjct: 1 MDALSDLLQTIQLSAKIYVCRAVGGPWNMQVHYRPQGI--FHTVIQGQCYLREGGSDDLV 58 Query: 60 TLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFL-----------TSLP-- 106 L+ G+ V P AH +S + +++ L S P Sbjct: 59 LLQAGDGVAFPTGGAHWISDSPGSQDLVAENVVKVTGDDGLLLLKTGEVTVSASDSAPWG 118 Query: 107 --ETLFLAPVNHSVEYNWLREAI------------------------------------- 127 + + S + + + Sbjct: 119 NDPRMAPSAGGDSPGDDQVTILLSGALSYDSSIDHPFLKSLPCFIQTSSKSSGDLHRHDV 178 Query: 128 --PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQ 185 L +ES + PG + + F +R + ++ ++ L P +G + Sbjct: 179 LTNLLIEESFGSYPGKRLMVDHLAEALFVQLLRVHMRKMKQSNGFMAALSDPHIGVALNL 238 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 + WTVESL A M R SF Q F ++ G+TP + LT RL A + Sbjct: 239 IHTETDQKWTVESLCKAAAMGRTSFTQKFENMVGSTPKSYLTSTRLMKAKSKLQNSNDSM 298 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + IAE GYASE++F KA + F TPGE R+ Sbjct: 299 LSIAEGAGYASEAAFGKAIKQRFNRTPGELRK 330 >UniRef50_C8NCJ5 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCJ5_9GAMM Length = 313 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 28/299 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D++ RLL L Q I+ C L + + + H +H L +G+ + G + L Sbjct: 12 DSIDRLLELLDLQTRIEVYCHLQAPFHMVHEPDTPGTAWFHLLLEGSCTIAT-GGHQYAL 70 Query: 62 RPGNVVLLPQNSAHRLSHVDN---------------------ESTCIVCGTLRL-QHSAR 99 + G+ +L S H + + E ++CG ++ +A Sbjct: 71 QAGDFFMLTAGSQHTIYAGEGNGSFREDTRNGLLQLCNDSGGEPLRMLCGFYQVRNRAAV 130 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 L LPE L ++ + L + E+ + G + +C LA+R Sbjct: 131 SLLGILPEPLLVSL----GDIPQLPALCTLIHHEALTRHEGSLTIIRALCEILLLLALR- 185 Query: 160 WIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSG 219 I+++ + + +L P L + ++L P +T E LA IA MSRA+FA+ F+ +G Sbjct: 186 HISELPEKHRLTALFSDPGLARALARILADPFAPYTTEGLAEIACMSRATFARKFQQAAG 245 Query: 220 TTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 + + L++ AAQM V +AE GY SE++F AF +FG TP YR + Sbjct: 246 SGVQTFIRTLKMSAAAQMLRDSNHAVSRVAEETGYQSEAAFINAFKAQFGITPARYRRQ 304 >UniRef50_Q39N64 Transcriptional regulator, AraC family n=11 Tax=Burkholderiales RepID=Q39N64_BURS3 Length = 333 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 130/308 (42%), Gaps = 31/308 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLE-MPTGEIFT 60 D LSR + L G ++ C G+ W + + I +HA+ +G A LE G + Sbjct: 6 DWLSRFMALVTVTGKLEIRCAFGAPWAITYERSPACEIPYHAVLRGRAILENPDDGTVRE 65 Query: 61 LRPGNVVLLPQNSAHRLSHVDN-----------------------ESTCIVCGTLRLQHS 97 L G++VLLP S H L E ++CG + Sbjct: 66 LGGGDLVLLPHGSPHVLHDGSGLPPVPAIKRPGGHVFIGENAGTGERLDMLCGRFVVAPP 125 Query: 98 ARYFLT-SLPETLFLAPVNHSVEYNWLREA------IPFLQQESRSAMPGVDALCSQICA 150 + LP L + S + L + ++ ES G A+ + + A Sbjct: 126 HDRLIRRHLPPDLVVRAATDSRTPDALAATARLTALVELMRAESLEQQLGGLAILNALSA 185 Query: 151 TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASF 210 F LA+R +L+L PRL A I ML+ P WT+ LA++ MSRA+F Sbjct: 186 ALFALALRAISESGQAPTGLLALAGQPRLAAAIVAMLDDPAKPWTLPELAALCSMSRATF 245 Query: 211 AQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGC 270 + F+ G + +LT +R+ +AA + + ++ VGY S ++F + F R G Sbjct: 246 MRHFQSTLGHSAADLLTDIRMSLAANALRQPSASAEAVSADVGYQSVAAFRRVFTRWAGM 305 Query: 271 TPGEYRER 278 TPG++R + Sbjct: 306 TPGDWRRQ 313 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 202 bits (515), Expect = 9e-51, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 98/267 (36%), Gaps = 8/267 (2%) Query: 15 GTIDKNCVLGSDWQLP-HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNS 73 + +P H EL +I + G + + PG+++L+ Sbjct: 19 AGYYHVTESHPQYAMPYHWHEELELIH---IISGTFHVTI-NETTRNAVPGDILLVNSGG 74 Query: 74 AHRLSHVDNESTCIVC--GTLRLQHSARYFLTSLPET-LFLAPVNHSVEYNWLREAIPFL 130 H + D C+V L Q A FL L L L + + + + L Sbjct: 75 LHGGTPYDCVYECLVFPVSLLSSQTYASEFLNRLDRQDLILDEYFPAGDDTAIHSLLERL 134 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMP 190 + + G C + F L +++ + + ++ + L V+ + Sbjct: 135 FALMQDSDEGGKLQCLGLLYQFMGLLLQDRRYTASDKSDLSTHRNIYLLKNVLNYIEAHY 194 Query: 191 GHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAE 250 T+ LA A MS F F +++G TP+ + R++ A + + + IA Sbjct: 195 TEKITLHELARTAGMSSKYFCHFFSEMTGRTPIDYVNYYRVERACCLLAGIGHSITDIAM 254 Query: 251 SVGYASESSFHKAFVREFGCTPGEYRE 277 G+ S F +AF + G +PG+Y + Sbjct: 255 LCGFNDVSYFTRAFKKYKGISPGQYLK 281 >UniRef50_B5CQG2 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQG2_9FIRM Length = 277 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 21/271 (7%) Query: 14 QGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNS 73 DW + + + + G+ + E F + +++++ N Sbjct: 19 HLLYSTYSKYEEDWSSYPHTHYFTELFF--VLSGSGSFLVED-ETFPIAKHDLIVINPNI 75 Query: 74 AHRL-SHVDNESTCIVCGT----LRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIP 128 H S +++ IV G + + Y L + + L Sbjct: 76 THTEKSSLEDPLEYIVLGVDGLNFVIDDANEYLL-----------FHSDEMKDRLDFYFR 124 Query: 129 FLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLE 188 + +E+ ++ + +C + R + V + + + Sbjct: 125 TILEETENSQKDYEKVCQNLLNILVVHLSRYASSSVEIFP--FHKMESRECSRAKRYIDS 182 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 T++ LA IA +++ F+ F + G +P+ LT+ R+ + ++ + + + I Sbjct: 183 SFRENITLDKLAEIAQINKYYFSHTFTETYGISPMNYLTQKRIFTSQELLTSTDMSLAQI 242 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERV 279 A+ G++S S F + F + G TP YR++ Sbjct: 243 AQQCGFSSSSYFTQCFRKSCGMTPTAYRKQF 273 >UniRef50_D2PPT5 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPT5_9ACTO Length = 296 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 118/301 (39%), Gaps = 37/301 (12%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M+ L LL G + VL + + L + + + A +G A + + G Sbjct: 1 MEPLDDLLRSVRADGAVLGTPVLAAPYALRFV--DGAALTLIAPLRGEAWI-VADGTPVV 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES-------------------------TCIVCGTLRL- 94 +RPG+ ++ ++ + T ++ G + Sbjct: 58 VRPGDTAVVRGPEPFVVTDDPDRRGETVDVLCDGTVQGSSTPYDESAAGTVLLAGAAHVR 117 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 Q L LP + + + +L+Q + M G + ++ Sbjct: 118 QELPSRLLRDLPRAVVVPADHDC------APLRDYLEQRIAAGMHGRRVVLDRLIDWLLI 171 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 A+R+W Q +T +G V+Q + + P WT+ SLA +A +SR + A+ F Sbjct: 172 CALRDWFEQNSTP--WYRAAGDATVGPVLQALHDAPAAPWTLASLAGVAGVSRTTLARRF 229 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 D+ G PL LT+LR+ +A Q+ + V +A VGYA SF AF RE G +P Sbjct: 230 TDLIGEPPLTYLTELRMTLATQLLAEPDATVARVARRVGYADAFSFSAAFKRERGVSPST 289 Query: 275 Y 275 Y Sbjct: 290 Y 290 >UniRef50_A5V6I7 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V6I7_SPHWW Length = 319 Score = 200 bits (508), Expect = 6e-50, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 119/320 (37%), Gaps = 42/320 (13%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD L+ +L + L W + + A G+ + + G Sbjct: 1 MDLLNSVLQSLKIIDSSLGILELAPPWGFRRDTIPKDMATFIAPMSGSCLVRLDDGTTVE 60 Query: 61 LRPGNVVLL---------------------------PQNSAHRLSHVDN----------- 82 ++PGN VL+ P H + Sbjct: 61 MKPGNAVLILRDAFDIVSADGSPTKSFVESWTAQGLPAMGPHIERSGPDYFCAIDHERPD 120 Query: 83 -ESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 ++ ++ + A + + + ++ +E + F++ E R PG Sbjct: 121 EHRDRLLAVAVQAEDVAESPILGVLPQM-ISFDEKELEPALIGTVAQFVEAEHRQPNPGY 179 Query: 142 DALCSQICATFFTLAVREW-IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 +A Q+ F VR ++ + + + +G ++ + + W++++LA Sbjct: 180 NATAQQLANFLFIALVRNHVLSNGTDRASWIRGMSDRAIGHALKLIHQAFDKPWSLQNLA 239 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 + +SR+ FA FR + G TP+ L +R+ AAQ+ PV + + VGY SE +F Sbjct: 240 RASGVSRSVFAARFRTLVGQTPMTYLAAVRMHAAAQLLIDGQ-PVSNVCQRVGYRSEWAF 298 Query: 261 HKAFVREFGCTPGEYRERVR 280 KAF ++FG P Y + +R Sbjct: 299 RKAFRQQFGMMPARYGKSLR 318 >UniRef50_D0C8I5 Transcriptional regulator n=2 Tax=Acinetobacter RepID=D0C8I5_ACIBA Length = 295 Score = 199 bits (507), Expect = 8e-50, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 4/221 (1%) Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARY---FLTSLPETLFLAPVNHS 117 + G+V+++P H + +++++ V T Q + Y LP+ + + Sbjct: 69 VNDGDVIVIPSRFKHSIEIIEDKAAEPVVITCVFQLNGVYGQTIAEGLPKYIVVPSHQDG 128 Query: 118 VEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK-NILSLLLH 176 W+ + ++ E G + S + ++R W+ + + +S L Sbjct: 129 KVAEWIPMTVAAIKLELDQPSLGSQVMLSSVIDLLLVWSIRFWLNKETLNHKSWISALQS 188 Query: 177 PRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQ 236 P + + M P WTVE LA + S++ F++ F + GTTP+ L R+++A Q Sbjct: 189 PTISKALFLMHSNPTKEWTVEILAKETNQSKSKFSKNFIQLVGTTPINYLKHWRMKLAKQ 248 Query: 237 MFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 + IA+ VGY+S ++F ++F++ FG +P ++RE Sbjct: 249 YLMETNKSISQIADLVGYSSPAAFTRSFIQTFGYSPRKFRE 289 >UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=Pseudomonas RepID=Q88GS8_PSEPK Length = 306 Score = 199 bits (507), Expect = 8e-50, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 27/295 (9%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLRPGN 65 LL ++ W + +H + QG L + + L G+ Sbjct: 11 LLESLELDASLFHVGRYCGGWH--ASTQGMGRASFHLVVQGHCWLHIDGQPQAICLEKGD 68 Query: 66 VVLLPQNSAHRLSHVDNE--------------------STCIVCGTLRLQHSA-RYFLTS 104 V L ++ A+RLS + +VCG Q + Sbjct: 69 AVFLLRDLAYRLSSDQDPVDACAQPRQAMQALDSQAADGVGLVCGFFHFQSGLCSLIVEG 128 Query: 105 LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV 164 L + + L + S R + +E R L ++ F +R+ + Sbjct: 129 LADWILLRAEDPSGSAA--RALFGLILEECRRDAGPSQMLLERLTHLLFLYVLRQQVHAG 186 Query: 165 NTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLA 224 + +++L P +++Q++E PG WT+E++A+ +SR++F + F +++G +P Sbjct: 187 QSLGGLVALARQPAFAGLLEQLIEHPGQTWTMENMAACTGLSRSAFFKRFSELAGQSPGQ 246 Query: 225 VLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 VL LR++ A+Q+ + V + VGY S ++F +AF + G PG YR + Sbjct: 247 VLLALRMRHASQLL-QAGHTVEQVGAQVGYQSVAAFTRAFAKAVGVQPGAYRRQH 300 >UniRef50_D0LQY3 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQY3_HALO1 Length = 313 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 77/301 (25%), Positives = 120/301 (39%), Gaps = 33/301 (10%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTG-EIFTLRP 63 S +L + + VLG+ W L S ++A+ QG +L + E L P Sbjct: 2 SDVLEVIRFSTSFFGRFVLGAPWALRIPEKPTS--SFYAVAQGQPRLLVNGHAEPLCLAP 59 Query: 64 GNVVLLPQNSAHRLSHVD-------------------------NESTCIVCGTLRLQHSA 98 G+V ++P+ S H+ D T ++ G A Sbjct: 60 GDVAIVPRGSGHQFDDGDRRAPPRQGFIDGAALRSATGMLGGAGAKTILIAGCFTFSVGA 119 Query: 99 RY-FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 R+ L +LP L L H+ L I + ES + PG + +++ A+ Sbjct: 120 RHPLLRALPAALHLP--AHAPPRPELAATIQLITAESATPRPGSALILARLADVLLMQAL 177 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R + + L L P +G + + WTV +LA+ +SR+ FAQ FR + Sbjct: 178 RAQVTL--SANGGLRALSDPVVGPALSLIHTRYRAPWTVAALATAVGVSRSGFAQRFRAL 235 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 G PL L R+ AA + V IA+ VGYAS ++F KAF + G P +R Sbjct: 236 LGEPPLRYLVGWRMTKAAARLRVTSDSVAEIADEVGYASAAAFSKAFKQWAGVGPDAFRR 295 Query: 278 R 278 Sbjct: 296 A 296 >UniRef50_A1UBR1 Transcriptional regulator, AraC family n=5 Tax=Mycobacterium RepID=A1UBR1_MYCSK Length = 320 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 62/300 (20%), Positives = 111/300 (37%), Gaps = 28/300 (9%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLR 62 + L+ L P+ K +W + + + + +G+ L + L Sbjct: 23 PVEMLVSLLRPKTVESKIISGAGEWSVREP--RYADPAFCVMLEGSCVLRLDGYHPIELH 80 Query: 63 PGNVVLLPQNSAHRLSHVDNE-----------------------STCIVCGTLRLQHSAR 99 G+ +LL +S S ++ G R + Sbjct: 81 AGDFMLLTDMPEFVMSSGHGAMSTVLAAGPVNGVARHGDPDGPASMRMLGGYFRFERENA 140 Query: 100 YFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 L L + L + + L + + +E+ SA P + + ++ A+R Sbjct: 141 PLLAPLLPRIVLVR-HDEPRASRLSRIVALISEETGSAAP-SELILVRLVEVLLVEAMRL 198 Query: 160 WIAQ-VNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS 218 A E+ +++ L P L +++M WTVE LA A +SRA FA+ F Sbjct: 199 RAAPVEGVERGLVAGLDDPVLAPALRKMHTDIAFGWTVERLARAAGVSRAVFAERFSRTM 258 Query: 219 GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 G P+ L + R+ +A +M E + + +A GY S S+F AF R G +P + Sbjct: 259 GMPPMQYLAQWRMALAKEMLRTEDVSIAEVARRTGYLSASAFTTAFTRMTGTSPSAFARA 318 >UniRef50_B2T994 Transcriptional regulator, AraC family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T994_BURPP Length = 279 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 120/281 (42%), Gaps = 8/281 (2%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS L+ + Q + N L + H L +G ++ + G + Sbjct: 4 DQLSALIERFSLQTGVFYNGTLCGIARFEEEQQGY----IHLLRRGRMRVRLSDGTTLPV 59 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYN 121 ++ P+ AHR + E + C ++R+Q +T + + E Sbjct: 60 SGPCLMYCPRALAHRFEVEEEEEVELTCASVRIQSGFNNPITRAIPDIVILQC---AELP 116 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 + + L E+ + G A +++ +R I+Q +L+ L PR+ Sbjct: 117 HAKPLLDILVAEAATYQDGRVAALNRLFELVIIQVLRFLISQGKASSGLLAGLADPRIAL 176 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 ++ + E P AWT+E +AS A MSRA FA FR+V TPL +T RL +A QM Sbjct: 177 ALEAVHEHPESAWTIELMASTAGMSRARFADHFRNVVQLTPLNYVTDWRLTLAQQMLLAG 236 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 +IA VGY S S+ +AF R G +P + + R+L Sbjct: 237 -RSTQLIASEVGYESSSALARAFRRRLGFSPVAWLDSQRKL 276 >UniRef50_C3JUH7 Transcriptional regulator, AraC family n=3 Tax=Nocardiaceae RepID=C3JUH7_RHOER Length = 319 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 123/316 (38%), Gaps = 47/316 (14%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS +L + +G +L W L + + I L +G+A + TG+ Sbjct: 1 MDALSMMLAGSRAEGAFLLRSLLDPPWSLRI--EDHAPITVLVLVRGSAVVVSDTGQTED 58 Query: 61 LRPGNVVLLPQNSAHRLSHVDNES------------------------------------ 84 L G+V LL + ++ + Sbjct: 59 LEAGDVALLRGPDPYTVADHPDTPVHVLIDEAQNCAAVDGSPLEDMSVHGIRTWGNSTSG 118 Query: 85 -TCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 T ++ GT RL +R L SL + + L+Q+ + PG + Sbjct: 119 QTVMLTGTYRLDSYVSRQILDSLTPVAVVRRSIET------APMTNLLEQQIAADGPGQE 172 Query: 143 ALCSQICATFFTLAVREWIAQVN-TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 L ++ AVR W A+ + P +G ++ + P H WTV SLA Sbjct: 173 VLLDRLLDLVLISAVRTWFAENPNRSPRWIKAYEDPVIGHALRLIHNRPEHPWTVASLAQ 232 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 + SRA+FA+ F + G P+ LT+ RL +AA + + V IA VGY+S + Sbjct: 233 ESGSSRAAFARRFTSLMGLGPVGYLTEWRLSVAADLLADPARTVSSIAREVGYSSPFALT 292 Query: 262 KAFVREFGCTPGEYRE 277 AF R G +P YR+ Sbjct: 293 TAFTRHHGMSPKMYRQ 308 >UniRef50_A0NP18 AraC-type DNA-binding domain-containing protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NP18_9RHOB Length = 266 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 112/281 (39%), Gaps = 32/281 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGS---DWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI 58 D LS L+ Q I + ++ + + + G L Sbjct: 14 DRLSSLIDRLRVQVDISLTADADGSDSNLRIYDSPVRGLRLVFCPVRDGKGTL------- 66 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 ++ T +V + + R +++LP+ + + Sbjct: 67 -----------------CGMEPASDETPLVAARITISGVGRQLISALPDCISV----QMT 105 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 E +L + L +E+ G A ++C +R + + + +L+ L +PR Sbjct: 106 EDPFLSAVVTPLIEEATMPRCGGQAAFQRLCEVVVIRLLRHAMEEGKADTGLLNGLANPR 165 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 + A + + E+PG WT+E LA A MSR FA F+++ GTTP+ L+ RL IA Sbjct: 166 IAAALVAIHEVPGEPWTLEKLAETAGMSRTQFAVTFKELVGTTPMGYLSNWRLDIARSEL 225 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 V +A G+AS ++F +AF R FG +P + R + Sbjct: 226 -ETGRQVKAVASLCGFASPAAFSRAFSRRFGYSPKQKRSQA 265 >UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF5_PAESJ Length = 294 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 25/298 (8%) Query: 1 MDALSRLLMLNAPQG-------TIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEM 53 MD LL G + C + H EL ++ +T+G A + Sbjct: 1 MDK--SLLKEARKHGNPIYPVSLYEITCPSDAPLLDLHWHDELELL---LVTEGTAVFRV 55 Query: 54 PTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLA- 112 + + L+ G + + H V + + + L + Sbjct: 56 DLQD-YELQAGEAIFVNSGELHSGYVVGGKPCSFDAVVFHSSLFSSGSIDYLFDRYISPV 114 Query: 113 ----------PVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA 162 L + + + R+ + + + V Sbjct: 115 LEKRYEVPAHLRREPGPGMELLAMLDQIFEVHRNEQAASELTIKGLLFSILAKLVSLGKP 174 Query: 163 QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTP 222 V + RL VI+ + + ++ LA +A MS + F + F+ ++ +P Sbjct: 175 SVRVKPE-QEGYRIERLKTVIEYIEQNYAEPIPLQKLAELARMSESYFCRFFKRITTKSP 233 Query: 223 LAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + + R+Q AA + ++ +A VG+ S S F+ F + FGCTP EYR R++ Sbjct: 234 IEYMNSYRVQQAASRLRQTDAKIMEVALDVGFNSLSYFNTVFRQRFGCTPREYRSRLQ 291 >UniRef50_A9CLF9 Transcriptional regulator, AraC family n=5 Tax=Rhizobiales RepID=A9CLF9_AGRT5 Length = 299 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 36/304 (11%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D ++ ++ L P +I K G W++ EL + A+ +G L + L Sbjct: 3 DPIAEVVSLLKPSPSISKLVTGGGRWRVER--TELGSPFYCAVVEGRCLLTVAGKAPIVL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVC-------GTLRLQHSARY-------------- 100 G+ VL+P+ + +S ++ + G RL Sbjct: 61 TTGDFVLVPEIFSFTMSSIEPPPRGALLQRLETSPGVFRLGDPDAPVEIKAMVGHCLFGS 120 Query: 101 -----FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 ++ LPE + + L + + E+ + + + ++ Sbjct: 121 DDKTLLVSLLPEIIHVRGE------QRLALLVQMINDETGAERTAREMVLGRLLEVLLIE 174 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R + +L + P+L ++++ E PG TVE LA A MSR++F + FR Sbjct: 175 VLRS-TGGASAPPGLLRGMADPQLAPTLRRIHEDPGRNMTVEGLAQFAAMSRSTFFERFR 233 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 G P+ T R+ +A ++ + + IA+ VGY S S+F AF R G TPG Y Sbjct: 234 REVGVAPMEYATGWRMALAKELLRK-DVATAEIAQRVGYGSASAFSVAFSRHVGQTPGAY 292 Query: 276 RERV 279 Sbjct: 293 SRAA 296 >UniRef50_A1SPZ5 Transcriptional regulator, AraC family n=1 Tax=Nocardioides sp. JS614 RepID=A1SPZ5_NOCSJ Length = 332 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 120/320 (37%), Gaps = 41/320 (12%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLP----------HGAGELSVIRWHALTQGAAKLE 52 L+ L +G I W G V+ H + +G ++ Sbjct: 4 PLADALAKLRLEGAIFLRGSYSEAWAYESVPGADLAALLVPGAERVVLMHVIGRGRCWIQ 63 Query: 53 MPTGEIFTLRPGNVVLLPQNSAHRL---------------------------SHVDNEST 85 + G+ G+VV+LP HR+ + T Sbjct: 64 VGDGDRHWADAGDVVVLPYGDTHRMGGVESVEPVQVGTLVQPPPWTRMPAIEHGGGGDPT 123 Query: 86 CIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 +VCG L + L++LP ++PV + ++R +I + Q++ G + Sbjct: 124 QVVCGYLASEDPLFDPRLSALPPVFVVSPVGEA--QEFVRASIAYALQQTAQVADGRFEV 181 Query: 145 CSQICATFFTLAVREWIAQVNTEK-NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIA 203 ++ +R +A L L HP L + M P W+V LA +A Sbjct: 182 PPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMAAMHADPAAHWSVAELARVA 241 Query: 204 HMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKA 263 +S + + FR V G P+ L R+ +A + L V VIA VGY SE +F +A Sbjct: 242 AVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELGVAVIAHRVGYESEEAFSRA 301 Query: 264 FVREFGCTPGEYRERVRQLA 283 F R G +P ++R+ ++ Sbjct: 302 FKRAHGRSPRQWRQTSGRVP 321 >UniRef50_A9GPX5 Probable transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GPX5_SORC5 Length = 311 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 115/306 (37%), Gaps = 30/306 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS + + W L A ++ H +T+G+ L E +L Sbjct: 5 DPLSSRFSMAKLSSELVCRTAARGAWALELPARP--ILVLHHVTEGSCVLR-AGREAVSL 61 Query: 62 RPGNVVLLPQNSAHRLSHVDN---------------------------ESTCIVCGTLRL 94 G+V L+ N HR+ H D + +CG R Sbjct: 62 YQGDVALVRPNVGHRVDHGDARAKPVLLDRWLEVAREEDGERVLGRGAATARALCGVFRF 121 Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 +H A L + T+ A A+ L+ E A PG + Sbjct: 122 EHDALAPLLQVLPTVIHAGARAIEARPSFAGALARLRSELHEARPGAGLARRRWLELILI 181 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 VR + + L + I +++ P AW V++LA +SRA+ A+ F Sbjct: 182 ELVRLLADREPAKLAALGATQDAVVARAIAELVHDPARAWDVDTLARTVGVSRATLARRF 241 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + +G P+A LR + A ++ TL IA +VG+A+ +F +AF RE G TP Sbjct: 242 LEATGAPPMAYRATLRTEHARRLLRETTLSNQQIAHAVGFATVQAFQRAFRRETGATPSA 301 Query: 275 YRERVR 280 R ++R Sbjct: 302 VRAQLR 307 >UniRef50_Q0HZJ9 Transcriptional regulator, AraC family n=13 Tax=Gammaproteobacteria RepID=Q0HZJ9_SHESR Length = 281 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 10/283 (3%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MDALS L+ AP+ ++ + L Q + + H L +G L + T Sbjct: 1 MDALSSLIQHAAPKASLFFSGNLC---QSAESEEHANGGQLHLLRRGELGLHQTGSAVQT 57 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY 120 + +++ P+ HRL + +VC L + S +LP+ L + + Sbjct: 58 ISEPTLIVYPRGRHHRLQPLHFSGCDLVCARLTFRDS--PLFRALPDALIIPL----TKL 111 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L I L E+ S +A+ + + L +R + E +L+ + P+L Sbjct: 112 EGLAPTINLLFDEAFSQRYAHNAVVASLLDLLLLLLLRHMVEHNLCESGLLAAMTDPKLA 171 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 I+ + P WT+ LA +A MSRA FA F V G PL+ +T+ RL +A Q+ Sbjct: 172 KAIEAIHASPDTPWTIAELAKLAGMSRAQFAARFHQVIGQPPLSYVTESRLLLAQQL-LL 230 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 PV IA VGY+ +F +AF R+FG TP + ++ + + Sbjct: 231 AGQPVKFIALEVGYSGGVAFSRAFERQFGLTPTRWLQQQKSMG 273 >UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SGH8_9FIRM Length = 288 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 12/269 (4%) Query: 14 QGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNS 73 + G DW + + G + + G++F ++P ++V++ Sbjct: 19 RLLYISKSRFGGDWNSTTHTHSCTELF--YCLSGEGQFYLA-GQLFPVKPDDMVIVNPQV 75 Query: 74 AHR-LSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQ 132 H LS + IV G ++ FL S +T + A N + + L Sbjct: 76 EHTELSLNASPLEYIVLGVASME-----FLFSKADTNY-AIFNCRENRERMVTLLHMLLA 129 Query: 133 ESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGH 192 E+ ++ G + +C + VR + E+ + + + + + Sbjct: 130 EADRSLDGCETVCQDLLEVLLIWLVRCTTISLQLEEA--APTENRECAEIKRYLDTNYRE 187 Query: 193 AWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESV 252 +++ LA +AH+++ A F+ G +P+ L + R++ + M + I+E + Sbjct: 188 DISLDLLAELAHLNKYYLAHTFQREYGISPITYLNRRRIEESKHMLGNTGYSLAQISELM 247 Query: 253 GYASESSFHKAFVREFGCTPGEYRERVRQ 281 G++S S F + F + G TP EYR + RQ Sbjct: 248 GFSSPSYFSQCFRKAEGMTPNEYRRQTRQ 276 >UniRef50_Q0KAF9 Transcriptional regulator, AraC-family n=9 Tax=Bacteria RepID=Q0KAF9_RALEH Length = 334 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 107/282 (37%), Gaps = 14/282 (4%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE--- 57 +D LS LL + + L L A + H L +G +L P G Sbjct: 18 IDRLSALLERFRARAHLFHQGPLCG---LTQFAAQPGRGFLHVLRRGELELRHPPGSGLP 74 Query: 58 -IFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNH 116 ++ P+ H + E + C L AR + L P+ H Sbjct: 75 GSLRFDEPTLLFYPRPVHHMFHNPPQEGSDFTCAALDFDGGARNPVVRALPPLIALPLAH 134 Query: 117 SVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNT---EKNILSL 173 L +++ L E+ G L ++ +R I + +++ Sbjct: 135 VA---GLEQSLALLFAEAGQVRCGHRLLADRLFEVVLIQLLRWLIDHHQEAGIQAGLIAG 191 Query: 174 LLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQI 233 L PRL + + E PG W + +A+ A MSR++FA FR V G P LT RL + Sbjct: 192 LSDPRLARALVALHEAPGEPWDLPRMAARAGMSRSAFAATFRLVVGQPPADYLTDWRLTL 251 Query: 234 AAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 A PV +A +GYA+ S+ +AF G +P ++ Sbjct: 252 AQAQLRLG-RPVKSVALELGYANASALSRAFTARLGQSPRQW 292 >UniRef50_A8LA37 Transcriptional regulator, AraC family n=1 Tax=Frankia sp. EAN1pec RepID=A8LA37_FRASN Length = 214 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 5/205 (2%) Query: 79 HVDNESTCIVCGTLRLQHS-ARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSA 137 +T ++C + + L LP+ + L + LR A+ L E R Sbjct: 4 PGAGATTELLCASYSFDQTRPHPLLHGLPQVVHLP--ARVGHHPDLRAAVDLLGNELRRP 61 Query: 138 MPGVDALCSQICATFFTLAVREWI--AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWT 195 G +A+ + +R W+ + + L P + + + PG W+ Sbjct: 62 RAGTEAIVPALIDMLLLYVLRAWLDEQSGHALTGWVMALNDPAISTALHHVHRHPGRPWS 121 Query: 196 VESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYA 255 VE LA A +SRA+FA+ F + G PLA LT R+ AA++ P+ +AE GY Sbjct: 122 VEDLAREAGLSRAAFAKRFATIVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYR 181 Query: 256 SESSFHKAFVREFGCTPGEYRERVR 280 SE +F KAF REFG PG YR + + Sbjct: 182 SEFAFAKAFKREFGAAPGRYRRQGQ 206 >UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9LA22_RUMHA Length = 277 Score = 196 bits (500), Expect = 5e-49, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 99/277 (35%), Gaps = 19/277 (6%) Query: 9 MLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVL 68 Q DW + S + + +T+G ++ + ++ +++L Sbjct: 14 DFLKAQLLYVTCATSDKDWHSMEHSHYFSELFF--VTKGTGYFQIEGKQ-IPVQKNDLIL 70 Query: 69 LPQNSAHR-LSHVDNESTCIVCGT----LRLQHSARYFLTSLPETLFLAPVNHSVEYNWL 123 + N H + + I G + + S+ S E+ + Sbjct: 71 INPNIPHTEFGNKEQPWEYIALGIEGVQFQYSEKEAPYSYSVFSL--------SREHREI 122 Query: 124 REAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVI 183 + L +E ++ G +C + R + + V Sbjct: 123 PWYLSTLVKEIQTQQEGYQTICQNLLELILLSVARSTRQEFLSAP---RQKTTRECRLVE 179 Query: 184 QQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETL 243 Q + E T+++L+++ H+++ F++ G +P+ L + R++ A + Sbjct: 180 QYINEHYHEDITLDTLSALVHINKYYLVHAFKNYKGVSPINYLIQRRVEEARYLLESTNY 239 Query: 244 PVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 V I E G++S+S F + F R G TP YR++ + Sbjct: 240 SVTKIGEISGFSSQSYFSQTFRRLTGTTPNAYRKKKK 276 >UniRef50_C9YV93 Putative transcriptional regulator n=2 Tax=Streptomyces RepID=C9YV93_STRSW Length = 313 Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 119/314 (37%), Gaps = 45/314 (14%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS LL +G+I + VL + W + + + + ++ +G L +P G + Sbjct: 5 DPLSALLGGIRAEGSIVSHAVLEAPWTIRFV--DGAPLTMVSVLRGGGILLLPDGSEQAV 62 Query: 62 RPGNVVLLPQ-------------NSAH----------------------RLSHVDNESTC 86 G+ ++ + H R + +T Sbjct: 63 GVGDTAIVRSLDAFHLVDQPDTLDRPHVEYEIACFAADAECTARDLGGIRWGDEPDGATA 122 Query: 87 IVCGTLR-LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALC 145 ++ G R H L +LP L + E + + ++ G AL Sbjct: 123 LIVGAYRASGHRHERLLRALPPVLVIN------EDTEVCAWLETAAADAALRSAGSQALM 176 Query: 146 SQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 ++ +R W + +E + L P L ++ P WTVE+LA+ + Sbjct: 177 DRLLDWALVCTLRTWFDRAGSEAPDWYRGLADPILAPALEAFHARPSKRWTVEALATESG 236 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 +SRA FA+ F V G+ PL ++ R+ A + S + IA+SVGYA F AF Sbjct: 237 VSRALFAKRFTKVMGSPPLTYVSGCRMDEAEALLSDTDSSIARIAKSVGYADAFGFSAAF 296 Query: 265 VREFGCTPGEYRER 278 R G +P +R R Sbjct: 297 KRRRGVSPSAFRAR 310 >UniRef50_C3RLG7 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RLG7_9MOLU Length = 280 Score = 196 bits (498), Expect = 8e-49, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 105/270 (38%), Gaps = 10/270 (3%) Query: 12 APQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQ 71 + + DW + + + +T+G ++ + F ++ + V++ Sbjct: 18 QARLLYVSSSKYEGDWHSQLHSHHFTELF--YVTKGCGGFKI-GADEFNVQENDFVIINP 74 Query: 72 NSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQ 131 N+ H D + + S SL + + N+ N + + + Sbjct: 75 NTMHTEVSRDRNPLEYIVIAID-GISFEIPEDSLKDYISCNYANY---KNEILFYLNLMV 130 Query: 132 QESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPG 191 +ES++ D +C Q+ +R V+ + + + + + Sbjct: 131 KESQAKNELYDDMCQQLMQVLLINILRLNRINVSLTQG---KTIRKEIFMIKNYIDRNYH 187 Query: 192 HAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAES 251 T+++LA HM++ A F++ G +P++ L + R+ + + L + I+ Sbjct: 188 KEITLDTLAEKTHMNKFYLAHEFKNDVGVSPISYLLQRRIYESKYLLRDTDLSISQISTI 247 Query: 252 VGYASESSFHKAFVREFGCTPGEYRERVRQ 281 +G++S S F +AF + +P +YR+ ++ Sbjct: 248 LGFSSLSYFAQAFKKSTNFSPLQYRKNHQK 277 >UniRef50_Q2SZ66 Transcriptional regulator, AraC family n=31 Tax=Burkholderia RepID=Q2SZ66_BURTA Length = 319 Score = 196 bits (498), Expect = 9e-49, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 103/283 (36%), Gaps = 9/283 (3%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L LL + L A + H + GA + T + + Sbjct: 31 DRLKGLLARFELHARVFHFGTLPGASTFDICADGFHM---HLVRTGAVCVTGGTLGLHAV 87 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQ-HSARYFLTSLPETLFLAPVNHSVEY 120 + V + + +R+ + I+ + L LP+ L + + S Sbjct: 88 PEPSAVFIGRPGKYRIEARGDAPVEILSAAIEFGLGDENPLLRGLPDLLAIPLASMSP-- 145 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 L L E+ + G D + +++ +R + L+ L RL Sbjct: 146 --LDGVQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRLVASGSLAGLSDARLA 203 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 + + P +W++E +A+IA MSR+ FA F D G P L + R+ +A + R Sbjct: 204 KALNAVHADPALSWSLERMAAIAGMSRSRFAAHFADTVGLPPGEYLLQWRVGLAKTLLRR 263 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 V IA VGY S S+ +AF + G P ++ R Sbjct: 264 G-YAVKEIAPEVGYGSASALTRAFAQCTGHAPTDWLARASDAP 305 >UniRef50_Q0K0F9 Transcriptional regulator, AraC-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0K0F9_RALEH Length = 308 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 117/301 (38%), Gaps = 30/301 (9%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGE-IFT 60 D L+ +L L + Q + G W L +++ + +GA L + Sbjct: 4 DPLTDILTLASAQCVDVGSLAAGGSWALRFPP--PGQLKFMVVVKGACWLTIEGMTAPRE 61 Query: 61 LRPGNVVLLPQNSAHRLSHV-----------------------DNESTCIVCGTLRLQHS 97 + G+V +LP + A L+ V + L Sbjct: 62 VTRGDVFVLPADLAFVLASDLQTASVDGRELFSGALESKVTLGHGLDFFAVGAHIALDRE 121 Query: 98 ARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 L+ LP L + +S E ++ + L QE S PGV Q+ A Sbjct: 122 RGKLLSEVLPPYLHI--GGNSAEAAVVQWLLNQLVQELVSERPGVALATRQLAQLLCVQA 179 Query: 157 VREWI-AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 +R ++ A + L RL ++ M PG AW + LA MSR+SFA F+ Sbjct: 180 IRSYLDASGPCVAGWVKALSDERLAPALRLMHREPGRAWELGQLAKEVAMSRSSFAIRFK 239 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 +G PL L LR+ +A +P+ + S+GY+SES+F AF R G PG Y Sbjct: 240 AGAGIPPLTYLQNLRMCLAEYELREGVMPISELGRSLGYSSESAFSSAFKRSSGMAPGRY 299 Query: 276 R 276 R Sbjct: 300 R 300 >UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SBA6_9FIRM Length = 286 Score = 193 bits (491), Expect = 5e-48, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 98/265 (36%), Gaps = 12/265 (4%) Query: 20 NCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSH 79 C G W G H + G E+ G + + G++ + R + Sbjct: 28 RCAPGQTWG----PGIRDHYLIHLVVSGKGIFEV-GGRTWEVSEGDLFFARPSQLIRYTA 82 Query: 80 VDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 + + + + + L + APV+H+ + + +R A+ + SR P Sbjct: 83 DEQQPWEY--SWVGFNGACAHKLAAQLPFTDDAPVHHTSDPDGMRAALTNIYS-SRGLQP 139 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 +A F +RE A + S + I+ + H +++ + Sbjct: 140 QDEAAMVGYLYLFIAALMRETSAGKPHTASSSS----QYVLNAIKYIQFNYSHDISIDDV 195 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A +SR+ ++F G +P+ LT+ R+ A ++ L + +A SVG+ + Sbjct: 196 AKSVGVSRSHLYRVFMLNVGKSPIDYLTEYRINEACKLLRAGNLSIAEVAVSVGFFDQFY 255 Query: 260 FHKAFVREFGCTPGEYRERVRQLAP 284 F + F R G P +Y + P Sbjct: 256 FSRVFKRAKGVPPSKYFAAQQDADP 280 >UniRef50_D2Q0X6 Transcriptional regulator, AraC family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q0X6_9ACTO Length = 278 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 122/280 (43%), Gaps = 13/280 (4%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 DALSRLL PQG + + L + WQ+ AG + + + +G A L + L Sbjct: 3 DALSRLLDDVRPQGVVVETADLSAPWQVRCPAG--AALTLVTMVRGTAVLTVDGETPAEL 60 Query: 62 RPGNVVLLPQNSAHRLSHVDNE---STCIVCGTLRLQHSA-RYFLTSLPETLFLAPVNHS 117 G+V L+ + L+ E +V G+ + L LP L + Sbjct: 61 AAGDVALVVGRRPYTLADGPAESADQAVLVTGSYEVGGGVCDRVLGGLPPVLLV------ 114 Query: 118 VEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV-NTEKNILSLLLH 176 + A+ L E +A PG AL ++ A+R W+ + ++ Sbjct: 115 ESGAGVGRAVDLLTDELENARPGQRALLDRLLDLIVLTALRVWLDRPDSSAPPWYRAQQD 174 Query: 177 PRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQ 236 P +G+ + M P WTV LA+ + MSRA+F++ F + G P++ LT RL +A Sbjct: 175 PAIGSALALMHAEPARRWTVAELAASSSMSRAAFSRRFHALVGEPPMSYLTCWRLCLAGD 234 Query: 237 MFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 + + +A VGYA+ + AF R +G PGEYR Sbjct: 235 LLRGTDDTLATVARKVGYANGYALSAAFTRFYGVRPGEYR 274 >UniRef50_A3YG00 Transcriptional regulator n=2 Tax=Proteobacteria RepID=A3YG00_9GAMM Length = 307 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 33/300 (11%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 +D LS+++ L P+ T K + +++ + + + + G A L + T Sbjct: 3 IDPLSQIIALLNPEVTHSKLVHASAAFEVSRS--DSNDAFYCLILSGKAYLNIKHATQLT 60 Query: 61 LRPGNVVLLPQNSAHRLSHV-------------------------DNESTCIVCGTLRLQ 95 L G+ VL+P + S + + G + Sbjct: 61 LNEGDFVLIPALGSFTFSSDQTTTKEMQNKPQFGDDGIYRFGPISETPKIQALVGHSKFT 120 Query: 96 HSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTL 155 + L SL + L + L + L +E+++ DA+ + Sbjct: 121 SVDKQLLVSLLPSYVLI-----QKEARLTKIASLLLEETQANRAAKDAIIEHLLQVLMIE 175 Query: 156 AVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFR 215 A R Q +T ++L+ L R+ I+ + + P H W+V LA A +SR++F F Sbjct: 176 AFRS-STQADTVTSLLAGLADARINPAIRAIHDTPHHPWSVTQLADQARLSRSAFYSRFN 234 Query: 216 DVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEY 275 + G TP+A L R+ +A M ++ + V IA+ VGY S S+F AF R G +PG Y Sbjct: 235 RIMGVTPMAYLLNWRMTLAKHMLNQGNMRVSEIADKVGYGSSSAFSSAFTRHVGQSPGSY 294 >UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus RepID=C6JCU7_9FIRM Length = 282 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 14/277 (5%) Query: 12 APQGTIDKNCVLGSDWQLPHGAGELSV-IRWHA------LTQGAAKLEMPTGEIFTLRPG 64 P+GT + + H + WH + +G+ + + + FT Sbjct: 10 RPRGTYEFPFEFH---HIDHTHPRYVMSYHWHVEYEIIRILEGSLTVTL-DEKSFTAVKN 65 Query: 65 NVVLLPQNSAHRLSHVDNESTCIVCGTLRLQ---HSARYFLTSLPETLFLAPVNHSVEYN 121 +V+ + H D CIV ++ + + + S E+ Sbjct: 66 DVIFVHSGILHSGIPHDCVYQCIVFDMNTFLKNNPVCGEYIQKILHQETMLFPHFSDEHP 125 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 + I L G + FF L N + +L Sbjct: 126 QILNCISVLFDAMYEKDTGYELTVFGQFYHFFGLIFSNHYFIENPTRTRRDYKRILQLKQ 185 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 V++ + + + T++ L++ MS F + F +++ TP+ L + R++ A + Sbjct: 186 VLEFIEKNYANPITLQELSASVSMSPKYFCRFFSEMTHQTPVDYLNRQRIEEACLQLAAT 245 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 + IA G+ S F + F + G TPG+Y+ R Sbjct: 246 DDSITEIAYRNGFNDLSYFIRTFKKYKGMTPGKYKRR 282 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 193 bits (490), Expect = 8e-48, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 12/255 (4%) Query: 21 CVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV 80 CV G W G H + G ++ G TL+ G++ L N + Sbjct: 29 CVPGHTWG----PGVRDHYLIHLVVAGKGVYQV-GGVSHTLQEGDLFLAKPNQLITYAAD 83 Query: 81 DNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 + + + + L L PV+H + +REA+ + SR P Sbjct: 84 ETDPWEYY--WVGFNGACANKLVQQTPFSDLHPVHHCKDPQAVREALYNIYL-SRGPEPQ 140 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 +AL + F ++E + + + + I+ + H +V+ +A Sbjct: 141 CEALMTGYLYIFMAHLMKEARDAMPN----VGSSSSQYVLSAIKYIQFNYSHDISVDDIA 196 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 +SR+ ++F G +P+ LT R+ A + L + IA SVG+ + F Sbjct: 197 KAVGVSRSHLYRVFMANVGQSPIDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYF 256 Query: 261 HKAFVREFGCTPGEY 275 + F + G P +Y Sbjct: 257 SRVFKKVKGVPPSKY 271 >UniRef50_C7PWW7 Transcriptional regulator, AraC family n=13 Tax=Bacteria RepID=C7PWW7_CATAD Length = 330 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 122/327 (37%), Gaps = 51/327 (15%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 MD ++ LL G +L W L + + + A+ G A + T Sbjct: 1 MDVIAGLLNGPRADGAFLLRSLLTPPWSLRV--QDQAPLTLVAVISGTAWVLPDPESSTT 58 Query: 61 ---LRPGNVVLLPQNSAHRLSHVD------------------------------------ 81 L G++ +L + + Sbjct: 59 ATCLHQGDLAILRGPDPYVFADDPATQPQAVIHPGQRCTTPDGEDLGDMRALGTRSWGNA 118 Query: 82 -NESTCIVCGTLR-LQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 + +T +V GT + L L++LP L IP L E P Sbjct: 119 PDGATVLVTGTYQVLSEICAPLLSALPALAVLRDGECDT------PLIPLLADEVARDTP 172 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTE-KNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 G DA+ ++ +A+R W+A+ + E P +G ++ + + P H WTV + Sbjct: 173 GQDAVLDRLLDLLTVVALRTWLARPDVETPAWYRAQDDPVVGTALRLIHDDPAHPWTVAA 232 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 LA AH+SRA+ A+ F G P+A L RL ++A + + +AE VGY S Sbjct: 233 LADAAHVSRAALARRFAAEVGEPPMAYLANWRLALSADLLRDPASTIASVAEQVGYGSAF 292 Query: 259 SFHKAFVREFGCTPGEYRERV-RQLAP 284 + AF R G +P E+RER R P Sbjct: 293 ALSAAFKRVRGISPKEHRERASRDATP 319 >UniRef50_A6SWK7 Transcriptional regulator, AraC family n=3 Tax=Burkholderiales RepID=A6SWK7_JANMA Length = 323 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 125/300 (41%), Gaps = 28/300 (9%) Query: 4 LSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRP 63 L LL T C + W + A + + + H +G L + L P Sbjct: 12 LDHLLAALDIGVTHFTVCDIRDGWGMRLDACQSASL--HYCLEGRGTLTVHGSPPIQLEP 69 Query: 64 GNVVLLPQNSAHRLSHVDNESTCI-----VCGTLRLQHSARYFL---------------- 102 VLLP A+R+ +ES + +CG+ + + Sbjct: 70 HTFVLLPSGIAYRIESASHESIQLEHRISLCGSFSHESVPTLVVGNGLQGIVTVCGEIRV 129 Query: 103 -----TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAV 157 + L +L + V N LR+ L ES G L + LA+ Sbjct: 130 ELASGSDLFTSLDVPLVARFNGANGLRDQFVMLLAESTQPGIGSSVLTEALLKQCLVLAL 189 Query: 158 REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDV 217 R+W + L+ + RL + + E P A+TV+SLA IA MSR++FA F+ Sbjct: 190 RQWGENDPSPLPWLAAVGDKRLSRALHAIFEHPAIAYTVDSLAMIAGMSRSAFAAAFQRA 249 Query: 218 SGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 G +P++++ +RL+ A+++ +PV +A+ VG++S S+F AF + +G P +R Sbjct: 250 FGQSPMSLVRLVRLRRASELLITTAIPVAEVAKRVGFSSRSNFSLAFSQLYGLDPSRFRR 309 >UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=C5RE92_CLOCL Length = 286 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 8/266 (3%) Query: 16 TIDKNCVLGSDWQLP-HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSA 74 + +P H E +IR + G L + E L+ G++ + Sbjct: 20 AFYHVSPSHPRYNMPYHWHTEYEIIR---IISGEFLLTLNGNE-LKLKTGDLAFIHAGIL 75 Query: 75 HRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHS---VEYNWLREAIPFLQ 131 H + +D CIV L + + + + V +S + L+ +L Sbjct: 76 HGGTPIDCVYECIVFDMKSLLKVNSTCSKQIQDIIHNSKVINSLLPTDNLELQTVCNYLF 135 Query: 132 QESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPG 191 + G + + + + + E + + V+ + + Sbjct: 136 ESMAQKKLGYELVTQGSLYHLLGIILEHRLYSTPKEATSKNQQRINQFKNVLSLIEQQYP 195 Query: 192 HAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAES 251 T+E L+ A M+ F + FR ++ +P+ L R++ + + + IA + Sbjct: 196 DPLTLEDLSKAAGMTPKYFCRFFRGMTQRSPIDYLNYYRIESSCEQLVSTNESITEIALN 255 Query: 252 VGYASESSFHKAFVREFGCTPGEYRE 277 G+ S F K F + G TP +Y + Sbjct: 256 CGFNDISYFIKTFKKYKGVTPKQYLK 281 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 104/269 (38%), Gaps = 11/269 (4%) Query: 9 MLNAPQGTIDKNCVLGSDW-QLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVV 67 L P+ +W + H ++ + GA + + + F L PG++V Sbjct: 15 SLVQPELIYTGLLEDAPNWFNIQHSHDFCEIL---YVAGGAGEAILEGKK-FRLAPGDLV 70 Query: 68 LLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAI 127 ++ + H ++ +R + ++ + + Sbjct: 71 VVNPGTLHEERSDAKAPLRLIFLAIR-DFAVPGLPAGCLSQEKYRVLSCGEYRYKMDIYL 129 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQML 187 L QE+ S + + + + L +R E + + + + Sbjct: 130 RELLQETSSQIEFYQEISQGLVSALLVLVMRLIRINPEDEAALS-----QECQKIKEYLD 184 Query: 188 EMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 + T++SL+ ++S+ + LF++ +G +P+ LT R++ A ++ S LPV Sbjct: 185 QNFTSPITLDSLSETVYISKHYLSHLFKEQTGVSPIKYLTSKRMEKACELLSETELPVSE 244 Query: 248 IAESVGYASESSFHKAFVREFGCTPGEYR 276 ++++VGY + F + F R +G +P +YR Sbjct: 245 VSKAVGYENPLYFSQVFKRIYGISPVKYR 273 >UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Ruminococcaceae RepID=C7H5Z6_9FIRM Length = 319 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 107/268 (39%), Gaps = 10/268 (3%) Query: 14 QGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNS 73 + G DW + + + +G L +G++F ++P ++V++ Sbjct: 50 RLLYISKSRFGGDWNSTVHTHSCTELFYCLSGEGQFLL---SGQLFPVKPDDMVIVNPQV 106 Query: 74 AHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQE 133 H ++ + L S L ++ + A N + + L E Sbjct: 107 EHTELSLNASPLE----YIVLGVSGIEILFGKADSTY-AIFNCRENRERMVTLLHMLLAE 161 Query: 134 SRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHA 193 + ++ G + +C + VR + E++ S + + + Sbjct: 162 ADRSLDGCETVCQDLLEVLLIWLVRCTTLSLQVEESPRSDNRECV--EIKRYLDNNYREE 219 Query: 194 WTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVG 253 ++++LA +AH+++ A F+ G +P+ L + R++ + M + I+E +G Sbjct: 220 ISLDTLAEVAHINKYYLAHTFQKAYGISPITYLNRRRIEESKYMLGNTGYSLAQISELMG 279 Query: 254 YASESSFHKAFVREFGCTPGEYRERVRQ 281 ++S S F + F + G TP EYR +VRQ Sbjct: 280 FSSPSYFSQCFRKAEGLTPNEYRRQVRQ 307 >UniRef50_UPI0001788255 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788255 Length = 292 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 88/275 (32%), Gaps = 16/275 (5%) Query: 20 NCVLGSDWQLPHGAGELSVIRWH------ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNS 73 G+ W + WH + +G ++ E +R G + + Sbjct: 19 RFPFGAYWYQFAPGAHVVDSHWHKEAEIFYVMEGEVLFQI-DSEYIPVRAGEAIFIDGGD 77 Query: 74 AHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLA---------PVNHSVEYNWLR 124 H NE + A + E + + S L Sbjct: 78 LHTGHAQGNEGCSFCAMVFDVGMLASSSYDLVQEGMIVPFQERRAAFPRRMTSGTDERLL 137 Query: 125 EAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQ 184 E I + S+ G +A A + + RL VI Sbjct: 138 EHIKEMMLLSKHKPAGYEAAIKGHLFLMLFQAASSGRLANRSRSEAADMTRTERLKKVIL 197 Query: 185 QMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLP 244 + + LA + MS F + F+ ++G TP+ + R++ AA++ Sbjct: 198 YIQSHYHRPIRLSELADLIPMSEGQFCRFFKSMTGQTPVDYMNSYRVRQAAELLRSPDNK 257 Query: 245 VVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + IA VG+ S F + F + CTP EYR+++ Sbjct: 258 ISDIALDVGFGHISYFVRVFRKIMNCTPSEYRKKL 292 >UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ18_9CLOT Length = 280 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 102/270 (37%), Gaps = 20/270 (7%) Query: 26 DWQLPHGAGELSVIRWH------ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSH 79 + + E H ++G +++ GE + +PG+ V++ H L Sbjct: 15 PFSVYIAQDEKFSWHCHKHMELDYCSEGHCTIKV-NGESYDCQPGDFVIIHTMEDHTL-- 71 Query: 80 VDNESTCIVCGTLRL---QHSARYFLTSLPETLFLAPVN------HSVEYNWLREAIPFL 130 + N ++ + L + F S F+ + + L + + Sbjct: 72 IRNSDCKLLGVQMDLSVLDTAFSPFYESQYLVPFIRGSGKYQRRIRVPKGSLLESILSEI 131 Query: 131 QQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMP 190 E + PG + F+ VR + ++ L R+ VI M + Sbjct: 132 LVEYQKKQPGYEMYIKGDILRLFSCLVRTKVIEIGERNVNFQDL--ERIKPVIDYMEQHI 189 Query: 191 GHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAE 250 +V + A IA MS F +LF+ V G T + +R++ A ++ + IA Sbjct: 190 ETELSVAAAAKIACMSYYHFCRLFKKVIGKTFVEYQNFIRIRRAEKLLITTDRTITNIAF 249 Query: 251 SVGYASESSFHKAFVREFGCTPGEYRERVR 280 G+ S + F++ F +E G P YR+++R Sbjct: 250 ETGFGSVAYFNRVFKKETGQAPANYRKKMR 279 >UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C32 Length = 297 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 83/271 (30%), Gaps = 19/271 (7%) Query: 27 WQLPHGAGELSVIRWH------ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV 80 + + E+ + WH +G A + E PG+++ + + H Sbjct: 23 FHIIPPGKEVLHLHWHDDLELIYFIRGNATFYI-GSETVKPEPGDLMFVNKGMIHTGFAD 81 Query: 81 DNESTCIVCGTLRLQHSARY-----------FLTSLPETLFLAPVNHSVEYNWLREAIPF 129 D + S + + + + Sbjct: 82 DEHQVEYYALVFHSVLAESRVAGSSHVQITNPYASGKRFFPILLPVTDAYNSLIAGIVKQ 141 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKN-ILSLLLHPRLGAVIQQMLE 188 + E G + R T + L R +I + Sbjct: 142 MIAEYEQQAIGYQVAIQSMLHLLLVHLSRHHHLHGPTGSADTVGAELTDRFKELIAFVER 201 Query: 189 MPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVI 248 TV+ A I ++S F + F+ V+G T + + LR+ A Q+ + P+ I Sbjct: 202 HYPEKLTVQQAAGIVNLSEYHFCRTFKKVTGKTFVEYVNLLRINAAEQLLIHSSDPITEI 261 Query: 249 AESVGYASESSFHKAFVREFGCTPGEYRERV 279 A VG+ S + F + F + +P + R+R Sbjct: 262 AFKVGFGSVNYFSQMFRQYKRHSPSQCRKRY 292 >UniRef50_C7GFI0 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C7GFI0_9FIRM Length = 291 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 102/265 (38%), Gaps = 17/265 (6%) Query: 21 CVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHV 80 DWQ + S + + G + + ++ +++++ + H + Sbjct: 26 SKYEGDWQSHPHTHQFSELF--YVISGKGVFYIEN-DTVSVCADDLIIINPHIEHTEKTM 82 Query: 81 DNES-TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMP 139 N+ T IV G L + P+ + N+ + +E + P Sbjct: 83 SNDPMTYIVFGVEGLAFYFNSQNAANPKGY--SYYNYGSAKTHFINFSQIMIKEFNARKP 140 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA----VIQQMLEMPGHAWT 195 G +A+C + RE V ++ + ++ + + T Sbjct: 141 GFEAICHGLLQVLLVYITREQHLSVISDTTL-------QISKECFVAKKYIDANYAKNIT 193 Query: 196 VESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYA 255 ++ LA I H+++ + F + GT+P+ L + RL + ++ + + +A S G++ Sbjct: 194 LDLLAEITHINKFYLSHSFTEYVGTSPINYLMETRLAASKELLLSSSRSIAEVASSTGFS 253 Query: 256 SESSFHKAFVREFGCTPGEYRERVR 280 S+S F + F + G +P +YR+ + Sbjct: 254 SQSYFSQIFRKNTGMSPLQYRKLKQ 278 >UniRef50_B5Y1B2 Transcriptional regulator, AraC family n=1 Tax=Klebsiella pneumoniae 342 RepID=B5Y1B2_KLEP3 Length = 317 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 121/298 (40%), Gaps = 25/298 (8%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI-FTLRPGN 65 LL + + ++ W G +H + +G L L G+ Sbjct: 7 LLDNLSIENSVFHVGKYCGSW--KGGTSGSGKASYHLVMEGHCWLHCAQHSSALRLEKGD 64 Query: 66 VVLLPQNSAHRLSHVDNES--------------------TCIVCGTLRLQHSARYFLTSL 105 +V + Q+ LS +N T + CG + + + L S Sbjct: 65 MVFILQDCPFVLSSHENAQSAYRAPVQEMQPLTYKDETSTALACGFITFKTTISQMLLSF 124 Query: 106 PETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN 165 + + + + + + + +E+ + L + + F + +R +++ Sbjct: 125 LPQVIVFKAQDDRSGS-IGKLVAVINREATQTALRSEKLIASLTELLFFMVIRHYLSSHT 183 Query: 166 TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAV 225 + + ++ L ++ +++ P WTVE++A + +SR+ F Q F VS +P + Sbjct: 184 VKTPLDNIPLTTEFLNLMAEIVLFPARPWTVEAMARASGLSRSWFIQRFNQVSPLSPAEI 243 Query: 226 LTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLA 283 + +R+ +A Q + + + AE VGY S+++F++AF R G TPG Y ++ R A Sbjct: 244 VRHIRIALACQHIA-GGVSLTQSAERVGYLSQAAFNRAFQRITGVTPGRYSQQCRDNA 300 >UniRef50_Q0S0T6 Transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S0T6_RHOSR Length = 294 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 8/284 (2%) Query: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT 60 M AL R L + +L ++ + ++ G A L + E Sbjct: 12 MGALDRALASLDWPVQAAQRELLAPGERVARVHDSAG---FSYISAGTAALRV-GQERSE 67 Query: 61 LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAP--VNHSV 118 L G++V+ P+ AHR ++ + L + P TL + V Sbjct: 68 LSAGDLVIYPR--AHRAEIRARRECNVINAWFLPSGGSAQTLGTFPNTLLVREFSVREPN 125 Query: 119 EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPR 178 + + S G +CS I T + A+R W + L + P Sbjct: 126 MAMLIEGMLSGQANASDFNRAGDAVVCSLISTTIVSSAIRLWAELGCAPERWLHQVSDPF 185 Query: 179 LGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 + + + E PG WTV++LA +A MSR++FA F + G TP + LT +R++ + + Sbjct: 186 IARALDAIHESPGDPWTVQNLAQVATMSRSAFAVRFTTLVGQTPASYLTDVRMETSKTLL 245 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQL 282 R+ L + A +GY SE+ F +AF R G P +R + R L Sbjct: 246 IRDGLSIAETAHRLGYESEAGFRRAFRRHTGSAPAAWRGQQRSL 289 >UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3B4_PAESJ Length = 300 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 96/251 (38%), Gaps = 8/251 (3%) Query: 30 PHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVC 89 + + +T G + E + G++V+ S+ + T + Sbjct: 58 RNREHGRVDFQLIYITGGKGRFRFHN-ETIEVPSGSLVVYTPGQPQHYSYQAEDGTEVYW 116 Query: 90 GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQIC 149 +SA +L L PV+ + + + QE S P + + Sbjct: 117 IHFT-GYSAYDYLQQF--GLLTQPVHTVGIIDDVTALFKKIIQELNSHRPLGSHMVNAYL 173 Query: 150 ATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRAS 209 TL R T + + HP + +I + E + ++ LA +S Sbjct: 174 LEMLTLLGRRL----QTAEEPGAQGRHPDINQMIAFIHEKYSESLSISDLAGECSLSVFR 229 Query: 210 FAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFG 269 F F++V+G TP+ +T++R+ A ++ S +L V +A VGY + F + F G Sbjct: 230 FIHKFKEVTGMTPMKYITEIRINEAKKLLSESSLHVKEVAAVVGYDNPLYFSRIFRSTVG 289 Query: 270 CTPGEYRERVR 280 P EY+++ + Sbjct: 290 IPPSEYKKQFQ 300 >UniRef50_B6YYF5 Transcriptional regulator, AraC family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YYF5_9RHOB Length = 302 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 121/299 (40%), Gaps = 26/299 (8%) Query: 7 LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNV 66 +L Q C L L L+ + H + G +L +P +R G++ Sbjct: 6 ILDEMEIQAHPFALCELNGACDLDLDKDPLATL--HYVLAGEGELVLPGRPAIPVRKGSL 63 Query: 67 VLLPQ------------------------NSAHRLSHVDNESTCIVCGTLRLQHSARYFL 102 +L+P AH + +++ + + + Sbjct: 64 ILVPALKKHVLRSFGQVQDPIPSCNPDKLKMAHLIHSSESQDKGQLIAICSRISLSLRQM 123 Query: 103 TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIA 162 +L + + V + + I L E + PG A+ + +R Sbjct: 124 ENLIDLVQEPIVEYQAGEDACEAPIRRLLLELANPAPGSLAMVRALLMQCMIELMRRRFN 183 Query: 163 QVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTP 222 + ++ L PR+ V++ +L+ PG +VESLAS+A MSR+ FA+ F++ G+ P Sbjct: 184 DQHGGLEWMAALRDPRMWPVLRHILDTPGEPHSVESLASLAGMSRSGFAKRFQEAYGSGP 243 Query: 223 LAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 + +L +R++ AA M P+ ++ +G+ S S+F +AF G +P ++R + + Sbjct: 244 MELLRDVRMRRAATMLLETDHPIERVSHLIGFRSRSAFSRAFEAAIGISPQKFRMQRKN 302 >UniRef50_Q39MN2 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. 383 RepID=Q39MN2_BURS3 Length = 199 Score = 189 bits (481), Expect = 8e-47, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 1/183 (0%) Query: 95 QHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFT 154 ++ L+ LP L L + + WL + F+ E+ S G A+ S++ F Sbjct: 14 DRLSQRLLSVLPPVLVLKGLRERP-FEWLELSCHFILDEALSPRAGAAAMISRLLDVIFV 72 Query: 155 LAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 +R W LS + R+ + + PG AW+V LA ++++SR++FA F Sbjct: 73 QLLRTWATAGAAGHGWLSGAIDSRINPAMSAIHADPGRAWSVSDLAELSNLSRSAFADRF 132 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 + V G PL+ LT RL AA++ P+ IA VGY SE++F +AF + +P + Sbjct: 133 QRVVGQAPLSYLTTWRLDRAAELLRYSRAPISDIAGRVGYTSEAAFSRAFRGRYEMSPMQ 192 Query: 275 YRE 277 +R+ Sbjct: 193 WRK 195 >UniRef50_Q3BY04 Transcriptional regulator, AraC family n=2 Tax=Xanthomonas RepID=Q3BY04_XANC5 Length = 355 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 116/300 (38%), Gaps = 32/300 (10%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS++L + DW L E ++ A +G + +P + Sbjct: 54 DPLSQVLAALGARSAGLNRLEARGDWALSFP--EKHRLKLVAAIRGECWIRLPRRAPKRV 111 Query: 62 RPGNVVLLPQNSAHRLSHV---------------------DNESTCIVCGTLRLQHSARY 100 G+V+L+ N+ + ++ D + T ++ + Sbjct: 112 VEGDVLLI-GNTPYVVASDPQCVPVDGVLRYAGQESLRLGDGDDTVLLGAGILFSGENSG 170 Query: 101 FL-TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVRE 159 FL +LP + + V+ S +R + L E G + S + A+R Sbjct: 171 FLIDALPRLMKIQSVSPSAFA--VRTTLDLLDAEMGRHRMGSARVASCLSEVLVVEAIRA 228 Query: 160 WIAQVNTEK-----NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLF 214 ++ + + + L +GA + M HAWTV LA MSR++F+ F Sbjct: 229 YMHENKEAHTQAHISWIGALGDRHIGAALALMHGDVAHAWTVAELALRVGMSRSAFSSRF 288 Query: 215 RDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGE 274 G PL LT+ R+ +A ++ + L + +AE VGY S S+F AF R FG P Sbjct: 289 SQTVGQAPLHYLTQWRMLLAHRLLAETGLDIAHVAERVGYQSPSAFSHAFKRMFGAAPRR 348 >UniRef50_A6T2N0 Transcriptional regulator, AraC family n=9 Tax=Proteobacteria RepID=A6T2N0_JANMA Length = 310 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 110/300 (36%), Gaps = 25/300 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D L+ ++ L P+ K W + G + + + + +G + + + Sbjct: 3 DPLTSVVTLLQPKMAYSKIVTGAGRWGVR-GEFDDAPLFCCVVLEGKMRYMV-DESPLIV 60 Query: 62 RPGNVVLLPQNSAHRLSHVD---NESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 G+ +L+P S +S + + L L+ + L H Sbjct: 61 EAGDFLLIPSMSKFSVSSFEVPADHEWQTEPALLENGEHRNGLLSVEADVRTLVGFCHLT 120 Query: 119 EYN------------------WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW 160 + L + + ESRS P + + ++ A+R Sbjct: 121 SPDSALLLTLLPKLVHIRGDLRLSALVQLVIDESRSQRPAREVVLERLLEVLLIEALRS- 179 Query: 161 IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGT 220 T +L L RL I+ + E P WTV LA + +SR++F + F G Sbjct: 180 SNNAGTSPGLLRGLADIRLANAIRCIHESPEQPWTVALLAKASALSRSTFFERFSAALGV 239 Query: 221 TPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 TP+ L R+ +A R + +A VGY+S S+F AF R G PG+Y + + Sbjct: 240 TPMDYLLSWRMALARNFLER-KKTIAEVAALVGYSSSSTFTVAFTRHTGMPPGQYSKSRQ 298 >UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR78_9CLOT Length = 281 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 10/272 (3%) Query: 11 NAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLP 70 + S + + S + L G K+ + +I+ L PG++ ++P Sbjct: 14 LKDKSVQVSRIRRSSSFVMKRPHYH-SYYEIYYLLSGKCKMFI-NQDIYYLEPGDMTIIP 71 Query: 71 QNSAHRLSHVDNESTCIVCGTLRLQHSARYF-LTSLPETLFL----APVNHSVEYNWLRE 125 H+ + + + L + S + E Sbjct: 72 PLEVHKALYEPSWEAERFGIYFSRDTVTSFLSLCGREAFGHIFSQPKRTIPSEFRPKIEE 131 Query: 126 AIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQ 185 + +Q E + + + R Q + + + Sbjct: 132 LLAQMQDEEKQGDSYCQIQLCSLLHQILVVLGRC---QEARREGHALEEAEEAMVRAARY 188 Query: 186 MLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPV 245 M + T+ +A+ A+MS F++ F+ +G L +R+Q A+ M L V Sbjct: 189 MNQHYQEGVTLGQVAAFANMSPTYFSKKFKSSTGLCFKEYLNYIRVQKASDMLRNTDLSV 248 Query: 246 VVIAESVGYASESSFHKAFVREFGCTPGEYRE 277 +A + G++ + F F R G +P EYR+ Sbjct: 249 TGVAMACGFSDGNYFGDVFRRLTGVSPREYRK 280 >UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0Y7_RUMGN Length = 276 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 11/275 (4%) Query: 5 SRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPG 64 S L + DW+ + + + + G E LR G Sbjct: 10 SEDLQNLNAKLLSIAFSKDEGDWKSIMHTHHFTELLF--VVSGEGSFSF-NQEQSPLRRG 66 Query: 65 NVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLR 124 ++V++P + H N L FL+ + + + Sbjct: 67 DLVIIPPYTEHTERSSQNHPLE----YYVLGIDGISFLSQ-KDRECAQVFCNFEHDPSIH 121 Query: 125 EAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQ 184 E + E R+A G +C + +R +Q +I S+ + + + Sbjct: 122 ELFRQMLYEIRTAQYGSQTICQHLLEILILKIIR---SQQLIPVSINSIRMTKECAQIKE 178 Query: 185 QMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLP 244 + T+++L + HM++ F +G +P+ L + RL+ A + Sbjct: 179 YLDSNYAEHITLDTLTGLTHMNKYYMVHSFTKYAGLSPIQYLNQTRLKRAQHLLKNTNYS 238 Query: 245 VVVIAESVGYASESSFHKAFVREFGCTPGEYRERV 279 + IA S G++S+S F + F + F TP +YR+ Sbjct: 239 ISDIASSTGFSSQSYFTQIFRKNFNMTPVKYRQEH 273 >UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIW0_CLOPH Length = 300 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 33/282 (11%) Query: 9 MLNAPQGTIDKNCVLGSDW-QLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVV 67 G+DW LPH + + +T G+ + + EI ++ +++ Sbjct: 38 NQVHVTLLYVAISKYGTDWKSLPHSH---NFAEFFYITNGSGQFSVE-KEILDVKANDLI 93 Query: 68 LLPQNSAHR-LSHVDNESTCIVCGT----LRLQHSARYFLTSLPETLFLAPVNHSVEYNW 122 +L H +S+ IV G + + L S S + Sbjct: 94 ILNPTIVHTEISNPSKPMEYIVLGIEGIKFQAEDQGYILLNS------------SAHKSD 141 Query: 123 LREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA- 181 L L E +S P + +C + FT+ +R +++ P+L Sbjct: 142 LHLYFNSLAHEMKSEQPYRNFVCQNLLNIIFTMILRNDAFKISIVSG-------PKLTRE 194 Query: 182 ---VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF 238 + + E T+E+L+S+ H+++ F F+ GT+P+ L K R++ + + Sbjct: 195 CNIAKKYIEENYQENITIETLSSLVHLNKYYFVHNFKKQFGTSPINYLIKRRIEESMHLL 254 Query: 239 SRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 + I++ VG++S S F +AF R TP EY++ + Sbjct: 255 VSTNHSLSSISQIVGFSSPSYFSQAFKRMTNITPQEYKKMYK 296 >UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C0Z0_BEUC1 Length = 329 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 17/285 (5%) Query: 6 RLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLE-----------MP 54 LL + L L ++ +T G+A L + Sbjct: 41 ELLRRMRWSAGALRRLSLDPHAATVVDGAGLRLLH---VTGGSAVLRSRREDDGAVGPLS 97 Query: 55 TGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPV 114 TL+ G+V LLP H L + C++ L L+ S +++L T+ L Sbjct: 98 DPHEVTLQAGDVALLPHAGRHELHAARDGGACVLTAGLTLEASPFDRVSALMPTV-LFTC 156 Query: 115 NHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQV-NTEKNILSL 173 ++ + + +E + P L ++ + A+R W+ + + L+ Sbjct: 157 GFRLDDPAYAGLVALIDREVSAESPTSSILVDRLIDVVVSAALRAWLERGCGNARAWLAQ 216 Query: 174 LLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQI 233 P LG ++ + PG +W VE LA +AH SR+ FA+ FR G +P +T +R++ Sbjct: 217 AHDPHLGRALEAIHAEPGSSWRVEDLARLAHSSRSQFAERFRSSVGESPARYVTGVRMRR 276 Query: 234 AAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 A ++ V +A ++GY S+ F +AF R G P E+R R Sbjct: 277 AEELLR-TGRGVSEVAFALGYDSDEGFSRAFRRHSGLAPSEWRRR 320 >UniRef50_A7B0D2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0D2_RUMGN Length = 270 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 8/249 (3%) Query: 33 AGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTL 92 + + L +G ++ M GEI+ L + VL P + H + + Sbjct: 30 SHFHDFFELYYLLEGE-RMHMIEGEIYHLTANDFVLFPPHIMHHSYGEKDMPFKRIVLYF 88 Query: 93 RLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATF 152 A + L L VN N + + L E DA Sbjct: 89 SPDLIANDTICQLLSEKELLFVNEGYIPNQILSLLLSLTHEIDVPGKYHDAYICNQLNGL 148 Query: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 +R V + S + + +V LA I ++S Sbjct: 149 LLNMLRLDFEAVKSIPKTRSA-------KAVDYIHNHYMEDISVNQLAEILYVSPYHLCH 201 Query: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 F++ +G T + L R+ A ++ + I+ VG+++ + F++ F + G P Sbjct: 202 EFKNATGKTIIQYLNTTRILHAQRLMLETDYNITQISREVGFSNLTHFNRTFKKITGVAP 261 Query: 273 GEYRERVRQ 281 E ++ ++ Sbjct: 262 REKKKLYQK 270 >UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C356F7 Length = 268 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 93/253 (36%), Gaps = 12/253 (4%) Query: 30 PHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHR--LSHVD-NESTC 86 H ++ L G K+ + ++ + PG+++ L HR NE Sbjct: 19 SHWHTHYE---FYYLYSGHCKIFI-NHTLYYVEPGDIIFLKPGEIHRTTYHSSPVNERVT 74 Query: 87 IVCGTLRLQHSARYFLTSLPETLFLAP--VNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 I L E +F + + + E I ++ E + Sbjct: 75 ISFDGEYLDSMKELCGEENVEYIFRNSKVTVPNGNRSRVEELIRRIEYEETGQDGFSPLM 134 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 R + T+ L + + A + + + + T+E +A ++H Sbjct: 135 KKGCFYELLVSLSRC--QEAETDHGRLE-IGEETIEAAAKYIYDHYQNPITLEEVAELSH 191 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 MS A F++ F+ V+G LT +R++ A+++ V IA+ G+ + F AF Sbjct: 192 MSPAYFSRKFKAVTGFGYKEYLTNIRIREASRLLLHSACSVTEIADRCGFGDGNYFGDAF 251 Query: 265 VREFGCTPGEYRE 277 + G +P +R+ Sbjct: 252 RKAKGVSPRAFRK 264 >UniRef50_Q9KBM0 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9KBM0_BACHD Length = 299 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 97/258 (37%), Gaps = 17/258 (6%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVC- 89 H E+ W + G A+ ++ T T+R G + +P H V ++ + Sbjct: 36 HWHHEME---WIYMEAGEAEFQIGTKMT-TVRAGEGLFIPSGHLHGAYPVSDKPFSLYAT 91 Query: 90 -------GTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQ---ESRSAMP 139 + ++ ++ P+ + W+ + + LQ + + Sbjct: 92 VVHPDFISSFGYDLIQSRYIDPFKDSERTGPIKLCPTHYWMSDMLTMLQATISQFQQKEE 151 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G + + V+ + + + ++ V+Q + E T++ L Sbjct: 152 GYELVIKANLLQMMAELVKHFPRTEEQKTGTPQQIR--QIKKVLQFIDEHYDEKLTIKQL 209 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A++ MS F++ F+ + T + + RL AA++ ++ I+ SVG+ S Sbjct: 210 ANLVQMSEGHFSRFFKSIVRMTAVEYIHTQRLNKAARLLRETDRTIMDISMSVGFDHPSY 269 Query: 260 FHKAFVREFGCTPGEYRE 277 F K F R CTP E+R Sbjct: 270 FIKLFKRHKRCTPSEFRR 287 >UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=A3DHI5_CLOTH Length = 302 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 98/264 (37%), Gaps = 13/264 (4%) Query: 27 WQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTC 86 W + E + + +G A E+ + P +++++ N H+ Sbjct: 38 WHMEPNKHECFEM--VYIKRGKAVFEIAGY-PAEIGPNDIIIIKPNQPHKFIVKSESGCE 94 Query: 87 IVCGTLRL-----QHSARYFLTSLPETLFLAPVNH-----SVEYNWLREAIPFLQQESRS 136 + + + + L + + + + N + + + +E + Sbjct: 95 FIVLSFKFVNRFDGQYSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRILKEREN 154 Query: 137 AMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTV 196 G + L + F L R + S + + A + + ++ Sbjct: 155 PDIGSEFLNYLLVMELFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNYERDISL 214 Query: 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYAS 256 + +A +S + F + F++ G +P+ L K+R++ A ++ + IA SVG+++ Sbjct: 215 KDIARYVFLSTSYFTRAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIALSVGFSN 274 Query: 257 ESSFHKAFVREFGCTPGEYRERVR 280 + F+ F + TP +YR+ V+ Sbjct: 275 QQRFNDIFKKYVKLTPLQYRKNVQ 298 >UniRef50_A8RPA3 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8RPA3_9CLOT Length = 339 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 21/260 (8%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCG 90 H ++ +I A+ +G + + E + R G V++ H +S +E+ Sbjct: 84 HWHEDMEII---AVKKGRGVVTV-DMEPYEARAGEAVVVFPGQLHGISQCGSEAMEYENI 139 Query: 91 TLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLR------------EAIPFLQQESRSAM 138 + L FL P+ L E I L Q Sbjct: 140 IFLPSMLMSAE-SDLCTYDFLRPMTEGGIGKPLHITGGLPDYGAFMECIGILDQLCGKKN 198 Query: 139 PGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVES 198 F L W + + R+ +++ M E G TVE Sbjct: 199 YAYQMGVKGTLFWFLGLIAGIWGPEAAGQPR----KSRERMKRLLEYMEEHYGEKITVED 254 Query: 199 LASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASES 258 A + S + F + F+ G + L + RL+ AA M PV +A+ G+ + S Sbjct: 255 GAELCFYSNSHFMKYFKQYMGVPFIQYLNEFRLEKAAGMLLTTPDPVTAVAQRCGFDNIS 314 Query: 259 SFHKAFVREFGCTPGEYRER 278 F++ F R++G TPGEYR+ Sbjct: 315 YFNRLFRRKYGKTPGEYRKN 334 >UniRef50_B6FM02 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B6FM02_9CLOT Length = 294 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 14/263 (5%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCG 90 ++ + G AKLE F ++ ++V++ N H L + +V Sbjct: 31 FPRHWHEHLQVYYFISGTAKLEC-GKNNFEVQANDLVIVNPNELHYLESTSDN---LVFY 86 Query: 91 TLRLQHS-ARYFLTSLPETLFLAPVNHSV--------EYNWLREAIPFLQQESRSAMPGV 141 T+R + S L +T +L P+ + L E + + E + G Sbjct: 87 TIRFEPSFLFSNHVDLLQTKYLTPITLNRIEFNNLIQNNTELTELVKKVLMEYFNKKIGY 146 Query: 142 DALCSQICATFFTLAVREWIAQVNTEKNILSLLLH-PRLGAVIQQMLEMPGHAWTVESLA 200 + +R + + T+ + R + + + T+ LA Sbjct: 147 ELAIKGYIYYLVVTLLRNHVQHILTQSELDDKEATLIRFQPAFELIEKKYNEKITLSKLA 206 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 + +S F + F+ ++G T + +RL + + + IA G+ + + F Sbjct: 207 NTVGLSVHHFCRSFKQLTGKTTTDYINNIRLDKSIYYLKQTDYNITEIALMCGFENGNYF 266 Query: 261 HKAFVREFGCTPGEYRERVRQLA 283 + F + +P +YR + LA Sbjct: 267 SRIFKKYHSTSPSQYRNLYKNLA 289 >UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=Cyanobacteria RepID=B0C3V1_ACAM1 Length = 283 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 2/216 (0%) Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRL-QHSARYFLTSLPETLFLAPVNHSVEY 120 R G++++ P + E+ + T + Q AR L + + L P H V Sbjct: 67 RKGDILITPAKIPLFVRWEGEENCLQIQLTTQFLQSVARETLEQNSDLIELIPTFH-VRD 125 Query: 121 NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG 180 + L E + G + +R + L +L Sbjct: 126 AQMEAIAMMLHTEFQQDTSGNRLYLDSLANILAVNLLRHHATKRPQLPIYEGGLPPRQLQ 185 Query: 181 AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR 240 V+ + + LA I MS F++LF+ +G +P L + R++ A Q+ + Sbjct: 186 QVLDYIDAHLDCEIKLADLAQILDMSPFHFSRLFKLSTGKSPHQYLIQQRIEHAKQLLKQ 245 Query: 241 ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 ++ IA G+ S S K F + G TP YR Sbjct: 246 TDRRIIDIAYECGFNSHSHLSKQFRQMMGVTPKVYR 281 >UniRef50_Q13NB1 Transcriptional regulator, AraC family n=6 Tax=Burkholderia RepID=Q13NB1_BURXL Length = 359 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 110/318 (34%), Gaps = 45/318 (14%) Query: 2 DALSR-LLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMP-----T 55 D L+ LL + T+ WQ +H + G L +P Sbjct: 22 DKLADWLLSSLELKSTVFHVGQYCGTWQ--ASTAGRRRASFHVVLHGECWLHLPASAERE 79 Query: 56 GEIFTLRPGNVVLLPQNSAHRLSHVDNESTC----------------------------- 86 L G+ V L ++ H LS Sbjct: 80 AHSLRLSSGDAVFLLRDMPHCLSPDFRPPASGHESARFGTMSPLTPPPAAPTTSPTAPAT 139 Query: 87 ------IVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPG 140 I CG + L SL + ++ + R ++ E+ Sbjct: 140 ATTSVGIACGFFEFNSALDDMLLSLLPD-HIVARRNNPSLDGARAIFDLIRVEALRDAQT 198 Query: 141 VDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA 200 L +++ F A+R A+ SL+ ++ ++E PG WT ++A Sbjct: 199 PSPLIARLTDLLFVYALRALGAEDEIVPCFWSLMRRAEFAPLVTAIIESPGERWTTGTMA 258 Query: 201 SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSF 260 HMSRA F + F D++G P +T +R+++AA M AE VGY SES+F Sbjct: 259 HFVHMSRARFCKQFVDIAGQPPAQFVTLIRMKLAAAMLRSGART-PDAAERVGYQSESAF 317 Query: 261 HKAFVREFGCTPGEYRER 278 +AF R G PG +R Sbjct: 318 SQAFKRVTGVQPGAWRRA 335 >UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regulator n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJP1_9SPHN Length = 350 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 115/317 (36%), Gaps = 43/317 (13%) Query: 3 ALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAK-LEMPTGEIFTL 61 + LL + G + L + W E +++ H +T G + L Sbjct: 22 PVDDLLRMIRLTGMMQVFSHLTAPWACAFPPEEDAIV-LHLVTAGKCVAYVTKRDDPIAL 80 Query: 62 RPGNVVLLPQNSAHRLSHVDNESTC----------------------IVCGTLRLQHSAR 99 G+ +L+ H L + R Sbjct: 81 VGGDALLVTPPVVHTLGDGPRSPAVPLVDLVPSPLKNAGSADEYLSNLFTQDYRFGGGGA 140 Query: 100 Y-----------------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 L SLP+ + L P + + ++ + + E Sbjct: 141 PALIYTLRMYLDRRFPTAILQSLPKLVRL-PGFVTRKAPFVEQLTSLIG-EHGKQGFMGL 198 Query: 143 ALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASI 202 A+ +++ T +++ + ++ L P L +++ + E PG WT+ +LA Sbjct: 199 AIATRLAEGVLTACIKDHLEATFQIVDVGRGLNDPLLSGMLRAIQEDPGRDWTILNLAER 258 Query: 203 AHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHK 262 A MSR++F F V+G P +T +R+ A ++ + P+ IA +GY+SE+SF + Sbjct: 259 AKMSRSAFINRFTRVTGQKPNEFVTSMRMMQAMELLEKSGTPIAHIATEMGYSSEASFTR 318 Query: 263 AFVREFGCTPGEYRERV 279 AF R F TPG R R Sbjct: 319 AFHRWFKVTPGTVRRRQ 335 >UniRef50_B4WW69 Transcriptional regulator, AraC family protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WW69_9SYNE Length = 291 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 73/215 (33%) Query: 62 RPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYN 121 R G++ + P + D++ V + ++ N Sbjct: 75 RRGDLCITPSGFSSGYRAEDDDHYLYVQVSSIFLQRISEEISETGTGKVELLPNFQTRDP 134 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 + + L E + +R + S L +L Sbjct: 135 QVESLLGLLHAEVHRNGQMGQLYSESLANALAVSFLRNHASTQPQVAQYESGLGDRKLLL 194 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 V + + + + LA + +S++ F++ F+ G TP L + R++ A Q+ + Sbjct: 195 VTRYIADALEQDIKLADLAQLVGVSQSHFSRQFKKSMGLTPYQYLLQQRIERAKQLLKQT 254 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +V IA G+ S S F + F + G TP YR Sbjct: 255 QQSLVDIALVCGFDSHSHFSRQFRKATGMTPSAYR 289 >UniRef50_B1M4B9 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M4B9_METRJ Length = 326 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 76/302 (25%), Positives = 126/302 (41%), Gaps = 25/302 (8%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D LS L L + +D C G W H A + +H +T+G A L P G + Sbjct: 19 DPLSGLAPLLRVRPHLDDVCRFGGTWAAAHEAEPMRQAYFHLVTRGRATLRRPGGAPLQV 78 Query: 62 RPGNVVLLPQNSAHRLSHVDNES-------------------------TCIVCGTLRLQH 96 G+++LLP+ AH ++CG L + Sbjct: 79 AAGDILLLPRGDAHLFHGAGPPPSTPLPVAVRHAHDLRFKTTVGAEPDVELICGRLAFEA 138 Query: 97 SARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLA 156 + R + + L + V + +++E G A+ + + F + Sbjct: 139 APRTLIVTALPDLLVLSVGAEPLATRFAPLLAGIREELNDLRAGSVAVAENLASALFMMM 198 Query: 157 VREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRD 216 +R + + +L LL P + M+ P H WT+++LA+ A SRAS + FR Sbjct: 199 LRAHLETSAPAEGLLRLLGQPLTARAVLAMVRDPVHPWTLDALAATAAASRASLVRAFRA 258 Query: 217 VSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR 276 +G PL LT LRL +A ET+ + +A VGY S ++ +AF+R++G PG+ R Sbjct: 259 AAGVAPLEFLTDLRLGLAHHRLRTETVSLDRLAAEVGYQSAAALSRAFLRKYGIRPGQAR 318 Query: 277 ER 278 + Sbjct: 319 QA 320 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 92/293 (31%), Gaps = 37/293 (12%) Query: 9 MLNAPQGTIDKNCVLG-------SDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 + G I N + L + I + +G+ + + + Sbjct: 4 RIIELSGDIFFNPDFDIFINREVEGFCLSQHTHDFIEIS--YVEEGSGYHYVEDQ-LIPI 60 Query: 62 RPGNVVLLPQNSAHRLS-HVDNESTCIVCGTLRLQHSARYFLTSLPET------LFLAPV 114 + G++ ++P ++H + I R L L L Sbjct: 61 KRGDLFVIPIGTSHVFRPSSQDNQLVIYNCIFR-----TCLLEQLKSVICESTKLHSLLY 115 Query: 115 NHSVEYNWLR---------EAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVN 165 S WL+ + + +E P + L + R Sbjct: 116 GSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRYEFLMMGQLIQVLAMLQRYECDGSM 175 Query: 166 TEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAV 225 + + IQ + + TV+ +A + MS + F +LF+ +G T + Sbjct: 176 VSTPTNN------MDDAIQYINDHFATNLTVQQVAERSFMSPSHFQRLFKKTTGVTFMQF 229 Query: 226 LTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 L +R+Q ++ + + A VGY FH F ++ G TP EYR Sbjct: 230 LQNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRKKTGVTPREYRRS 282 >UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CH60_9FIRM Length = 278 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 104/254 (40%), Gaps = 13/254 (5%) Query: 26 DWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNES- 84 DW + + + G K E ++ G++V++P H V +S Sbjct: 31 DWNSVFHTHHFTELF--YVVSGEGKFLFRN-ETHHIKTGDLVIIPPYLEHTEQSVKGKSL 87 Query: 85 TCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDAL 144 V G ++ A T + + + + + + + E R+ G + + Sbjct: 88 EYYVIGIDKISFLAENGQTG------IQAFCNFRDQSSVSDIFAQMLYEMRNDDYGSEII 141 Query: 145 CSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAH 204 C + L +R +Q +I S + + + + T+++L S+ H Sbjct: 142 CQNLLEI---LILRIIRSQRLIPISINSERMTKECAQIKEYLDTNYTERITLDTLTSLTH 198 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 M++ A F +G +P+ L + RL+IA + V IA S G++S+S F ++F Sbjct: 199 MNKYYMAHSFAKYAGLSPIQYLNRRRLKIACTLLRDTDHSVSDIASSTGFSSQSYFTQSF 258 Query: 265 VREFGCTPGEYRER 278 + +G TP +YR++ Sbjct: 259 RKYYGMTPLQYRQQ 272 >UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dictyoglomus RepID=B5YFJ6_DICT6 Length = 287 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 17/257 (6%) Query: 30 PHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHR-LSHVDNESTCIV 88 PH E ++ + +G K + E + L G + + S H L + + Sbjct: 38 PHWHNEFEIL---YMERGIGKFYVDGYE-YKLNEGEYLFVNSGSIHSGLEMIKRSIGYAI 93 Query: 89 CGTLRLQHSARY-------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 LRL +S FL + + + ++ +R I + + + G Sbjct: 94 VFDLRLLYSEEPDYCKHEYFLPLINKRYHIP---SNLNDEHIRNDICRIIEVFKEKSYGY 150 Query: 142 DALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 + + F + + + N + + R+ V+ + + +++ L+ Sbjct: 151 ELYIKSLLFDIFWRVFKYYAERRNQDGRL--GYKIERIKDVLNYINQNYNKNLSLDELSR 208 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 MS+ +LF++ +P+ + K+R+ A ++ + V IA G+ + S F Sbjct: 209 QVDMSKFYLCRLFKESLRMSPVEYINKVRVDKAMELLINTDMSVSEIAFECGFDNISYFI 268 Query: 262 KAFVREFGCTPGEYRER 278 K F + TP ++R++ Sbjct: 269 KVFKKYMHTTPLKFRKQ 285 >UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017894C2 Length = 310 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 18/270 (6%) Query: 27 WQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTC 86 +Q + + +G A L +++ +R G++ ++P + H +S +E Sbjct: 40 YQQSLWTHCHDYFQIWYVAKG-AFLHTVQQQVYEIRKGDIFVIPPFTLHSVSISPDEDIE 98 Query: 87 IVCGTL-------RLQHSA---RYFLTSLPETLFLAPVN-------HSVEYNWLREAIPF 129 I R Q +F + E +N SV +R + Sbjct: 99 IYGCEFMPSFVNERFQEQPTDHAFFDVAFLEYFLRKEMNAQSQITLDSVTDVTVRNVLKD 158 Query: 130 LQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEM 189 + E P ++ R+ ++ E S + V+ + Sbjct: 159 MLIEYERRTPFFQISLKAKLLVLLSILARQVNGELLREGFEKSEKYREIMTRVVDHIHNH 218 Query: 190 PGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIA 249 + L S++++SR++F LF++ +G T LT LR+ A M + L V + Sbjct: 219 YQEDMNLNDLCSLSNLSRSTFCILFKEWTGKTFNRYLTDLRILQAMMMLKQPELSVTDVC 278 Query: 250 ESVGYASESSFHKAFVREFGCTPGEYRERV 279 S G+ S F + F + G +P ++R++ Sbjct: 279 YSTGFNELSYFCRIFKKYTGISPTDFRKQA 308 >UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ70_CALS8 Length = 286 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 15/258 (5%) Query: 29 LPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIV 88 LPH E ++ L +G A + E F L P + + S H DN + Sbjct: 35 LPHWHDEFEIV---YLEKGTASFRVDGKEYF-LGPKQFLFVNCGSIHGGKAEDNPEPYAI 90 Query: 89 CGTLRLQHSARY------FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVD 142 +L + S +L S+ E L V +S E RE I + + G + Sbjct: 91 VFSLSMLFSEGPDICKSKYLQSVSERKLL--VQNSFEDEHTRELISNIITVWKEKPKGYE 148 Query: 143 ALCSQICATFFTLAV-REWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 L F + ++ +T++ + L ++ + + + ++ LA Sbjct: 149 LLVKGYLFVIFYYLFNKRYVTASSTDREL--DLKLEKIKSALDFINSNYSSDIDIDLLAK 206 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 +A++S+ F +LF++++ TP+ + K R++ A ++ L + IA VG+ + S F Sbjct: 207 LANLSKFYFCRLFKEITHLTPVDYINKFRVEKAIELIKNTNLSISEIAFEVGFNNVSYFI 266 Query: 262 KAFVREFGCTPGEYRERV 279 K F G TP +Y++ V Sbjct: 267 KVFKEYVGVTPFKYKKNV 284 >UniRef50_UPI000178AA6A transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA6A Length = 285 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 108/289 (37%), Gaps = 15/289 (5%) Query: 1 MD-ALSRLLMLNAPQGTI-DKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEI 58 MD L + + PQ I C Q+ + G A LE Sbjct: 1 MDKTLREPMTMPDPQFPIKVHRCEFDGRGQVLFNHHWHEHLEILYFVSGEATLEC-GSTT 59 Query: 59 FTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSV 118 FT + G+++++ +N H ++ + L + PE F+ P+ + Sbjct: 60 FTAKEGDMIVINRNELH-YGLSQSDHLFYYALIADFSLLQSHSLDA-PEMKFITPITQNR 117 Query: 119 --------EYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNI 170 + L + + +E G + TL +R ++A V T+ Sbjct: 118 LIFENRISGADALAPMLS-IIKELERQEFGYELAIKSELYRLLTLLLRGYVATVLTQDEY 176 Query: 171 LSLLLH-PRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKL 229 + + + R + + + E +VE L+ +A +SR F++LF+++SG T + + Sbjct: 177 VERMKNVERFAPIFKYIEEHYREDLSVEQLSGMAGLSRFHFSRLFKEISGRTVTEYVNET 236 Query: 230 RLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRER 278 RL A + L V IA + G+ F + F + P R++ Sbjct: 237 RLNRADYLLRESPLTVSEIAAATGFNDIYYFSRTFKKYKRMAPSALRKK 285 >UniRef50_C6D7E7 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7E7_PAESJ Length = 281 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 91/280 (32%), Gaps = 11/280 (3%) Query: 4 LSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRP 63 L+ +L W S +++ + +G L + + + P Sbjct: 10 LNEMLQHLQVHLEEAYYTQCSPQW--RELDYIPSYNKFYLICEGEGWLNIDGQDYRPV-P 66 Query: 64 GNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSL--PETLFLAPVNHSVEYN 121 G +V +P + S V + L P L ++P + Sbjct: 67 GQLVHMPAHVLQSYSAVSDRPYSKYWCHFTATMGEMDLFQWLEIPPILDISPDHTDS--- 123 Query: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGA 181 L + L + ++ I L + + L + RL Sbjct: 124 -LTKLFRELVELYQNRSYLARIREKAILLEIIALFLSHSDTHLKFVPGRLGEI--ERLKQ 180 Query: 182 VIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRE 241 + + A T+E LA H+ + F PL L + R+Q A + Sbjct: 181 IEAFIEANLSEALTLEQLAKHVHLHPNYLVRYFNKHFAVPPLKYLNRKRMQKAKSLLGTT 240 Query: 242 TLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQ 281 L + IAE VG+ + F KAF +E C+P EYR R + Sbjct: 241 DLAIKEIAELVGFPDTNHFAKAFRKEASCSPTEYRHRAGR 280 >UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FUL3_9FIRM Length = 277 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 10/259 (3%) Query: 24 GSDWQLPHGAGELSVIRWHALTQGAA-KLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDN 82 W +G +H + G LE E L PG L+P N+ + + Sbjct: 27 CDPWH-HYGPTLTHNYLFHYILSGRGSFLENERHEAIQLGPGQGFLMPPNTVCSYTADQD 85 Query: 83 ESTCIVCGTLRLQHSARYFLTS-LPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 + +A + + L + + + + +++ + + + Sbjct: 86 DPWTYCWIEFNGLKAANFMRQAGLNANNLIFTPHKPMIISSIKDTLETIIRNHSQH---- 141 Query: 142 DALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLAS 201 ++ +R N + + I + + +V+ LA Sbjct: 142 ESFLIAQLYLLVDHLIRFSKHSPQQRPNEIHSF---YIREAIHYIQDHYMDNPSVDQLAD 198 Query: 202 IAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFH 261 I H++R F +LF+ TP + R+ + ++ + + IA+ +GY+++ +F Sbjct: 199 ICHLNRNYFTRLFKQELHMTPSQFILTYRINQSCELLASTNRSIRDIADQIGYSNQFNFS 258 Query: 262 KAFVREFGCTPGEYRERVR 280 AF R G TP E+R R R Sbjct: 259 SAFKRVKGMTPMEWRRRYR 277 >UniRef50_A3ZY19 Probable transcriptional regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZY19_9PLAN Length = 323 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 114/292 (39%), Gaps = 19/292 (6%) Query: 2 DALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTL 61 D + L+ + + L L+ +H + G ++E+ L Sbjct: 24 DLTASLINHLKMRCLVTHVSDLQP---AAPLTLTLAAPMFHYVVSGRCQVELSDQSPAVL 80 Query: 62 RPGNVVLLPQNSAHRLSHVDNEST-----------CIVCGTLRLQHSARYFLTSLPETLF 110 G++++ +N L + I+ G R+ S L L Sbjct: 81 SAGDLIVDFRNVRQVLRSFGESAESPFGEPQPRYNRILSG--RIHSSGIEILPGLCNVPH 138 Query: 111 -LAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEK- 168 + + L +P + E G A+ + + +RE + + + Sbjct: 139 SIFRAAEWGDDGLLGRILPLITPELIGDRQGGIAVVNLMLTLVIVEILREQLTTLRADST 198 Query: 169 NILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTK 228 L + ++ ML P + W+VE LA++ M+R++FA+ FR+V G P+ VLT Sbjct: 199 GWLKAFQDEAISPILAAMLRQPEYPWSVERLAAVNCMARSTFARRFREVVGEAPMDVLTT 258 Query: 229 LRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 +R+QIA + + IA VGY S S AF R FG +P ++R +R Sbjct: 259 IRMQIAID-LVKAGANLKDIARRVGYGSIQSLTSAFRRRFGVSPAQFRSNLR 309 >UniRef50_C8P2X0 Putative uncharacterized protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P2X0_ERYRH Length = 273 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 98/273 (35%), Gaps = 10/273 (3%) Query: 9 MLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVL 68 LN + + SDW + + + + +G+ ++ ++++ Sbjct: 10 RLNRLKLLYIDSSRFDSDWHSTLHSHPFAEL--MYVVRGSGYFRFADNLKLPIQADDLII 67 Query: 69 LPQNSAHR-LSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAI 127 + N H S + IV G ++ + P ++ E + I Sbjct: 68 INPNVLHTECSDAEGGLEYIVLGIDGVEFYTEQ--NAHPGVSIHNYEDYKHE---ILFYI 122 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQML 187 + + ++ + + + +R + ++ E + + Sbjct: 123 KAILEAGKTHDEMSELIVENLLRVLVLNTMRRTTSLLDVETSTGGDNKDCIFLE--HYLN 180 Query: 188 EMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVV 247 T++ LAS+ +++ + +F++ +G +P+ L + R+ A ++ L + Sbjct: 181 LHYRENITLDHLASLTFLNKFYLSHIFKEQTGLSPIDYLLRKRMIEAKKLLINTDLSITQ 240 Query: 248 IAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 I++ VG+ S S F + F +P +R + + Sbjct: 241 ISDIVGFRSPSYFSQFFKNMECMSPSSFRNKHK 273 >UniRef50_A3Y511 Transcriptional regulator AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y511_9GAMM Length = 311 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 109/299 (36%), Gaps = 20/299 (6%) Query: 1 MDALSRLLMLNAPQ--GTIDKN-----CVLGSDWQLPHGAGE-------LSVIRWHALTQ 46 MD L+ LL PQ SD L A + Q Sbjct: 1 MDRLTSLLNHFRPQVKSVNYVRQHRDNSEQASDASLIQDAQTNASLSLSADSSYLLYIAQ 60 Query: 47 GAAKL----EMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNES-TCIVCGTLRLQHSARYF 101 G M T G+++ L +L + E I+ ++ Sbjct: 61 GTLSFVEQDFMLGAPEETFTQGSILWLAAGCELKLDPLAQEQDAAILVCEYDFGLASLNP 120 Query: 102 LTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWI 161 L ++ + + + L QE G + ++ +R + Sbjct: 121 LLD-TQSKLVGVGQEDDIALAIAPIMAVLMQELDKLSCGFQVVSERLAEALLVQFLRLLM 179 Query: 162 AQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTT 221 Q +L+ L +L I + + P AWTVE LA A MSR +F FRD G T Sbjct: 180 QQKRLPFGLLAALSDDKLARAIVAIHDQPAQAWTVERLAQQAGMSRTAFNNAFRDKLGHT 239 Query: 222 PLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 PL +T R+++A Q + + ++ +GY SE++F +AF + G PG+ R+R + Sbjct: 240 PLEYVTLWRMRLANQKLRQGQHNLAALSLELGYQSETAFRRAFKKNLGFAPGQVRKRQQ 298 >UniRef50_Q8YSB8 Transcriptional regulator n=2 Tax=Nostocaceae RepID=Q8YSB8_ANASP Length = 306 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 92/261 (35%), Gaps = 11/261 (4%) Query: 22 VLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVD 81 + + + ++R + G + E + G+V ++P + H Sbjct: 54 EHSPQQHVLTVSLDQQIVRLERILDGRLQYE-------NIAKGDVAIIPAQTHHISRW-- 104 Query: 82 NESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGV 141 T + ++ R + + + +++ LQ E S G Sbjct: 105 QSETKFLVLSVEPAFFTRMVIEAGDLQKIEIKPRFAAPDPLVQQIGLALQTELESEHKGS 164 Query: 142 DALCSQICATFFTLAVREWIAQVNT--EKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 + T ++ + T + + L H +L I + E T+ + Sbjct: 165 SIYIESLTTTLCIHLLKHYCVTGGTILDDHHHKGLSHWKLRQAISYIHENLDQDLTLVDI 224 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 ++ MS F++ F+ +G P + R++ A ++ + I VG+ S+S Sbjct: 225 STAVGMSMYYFSRQFKQSTGFAPHQYVMNCRIERAKKLLGSTNKTIEQICTQVGFQSQSH 284 Query: 260 FHKAFVREFGCTPGEYRERVR 280 F F + G TP YRE+V+ Sbjct: 285 FTNVFRKLMGITPRVYREQVK 305 >UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ3_ALKMQ Length = 282 Score = 183 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 94/258 (36%), Gaps = 13/258 (5%) Query: 31 HGAGELSVIRWH------ALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNES 84 G + +H L G + IF ++ G +VL+ + HR + D + Sbjct: 23 FGHYTMLSNHFHDQYEIYYLLSGERHYFIKD-RIFHVKSGTLVLINRQDVHRTTDADTQD 81 Query: 85 TCIVCGTLRLQHSARYF-LTSLPETLFLAPV----NHSVEYNWLREAIPFLQQESRSAMP 139 V + + +L + LF+ S E ++ + + E Sbjct: 82 HVRVLLNFSKDYLLSSPYVIALLDGLFMNNNYVIPFLSAEQQYVEVLLDKMIHEIEHQST 141 Query: 140 GVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESL 199 G + R +I + +H ++ ++Q + T+ S+ Sbjct: 142 GFQVALQALLMDLLVYTSR-YIESNRHDVLAPPSQVHEKISQIVQYINTNYQTPLTLSSV 200 Query: 200 ASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESS 259 A +S+ ++ F+ +G T + + +R++ A ++ V+ I+E+VG+ S S Sbjct: 201 AQNFFVSQYYLSRTFKQATGFTFVEYINNIRIREAQRLLRETNHKVIDISEAVGFGSISH 260 Query: 260 FHKAFVREFGCTPGEYRE 277 F + F +P YR Sbjct: 261 FGRVFKEVTRFSPLNYRR 278 >UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGK8_EUBR3 Length = 285 Score = 183 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 98/253 (38%), Gaps = 11/253 (4%) Query: 31 HGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIV-- 88 H + +I +G +++ ++ L +++ + HRL D I+ Sbjct: 34 HWHTPMEIIM---PLEGGYTVQIGD-DLVHLNENDIIFIASGVKHRLIAPDTGKRLILQI 89 Query: 89 -CGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQ 147 + LT + + L P ++ +R+ + + E ++ +A+ Sbjct: 90 EWSAVSKIKELNSILTLIAPAITLTPETSGDIHSNIRKLLLDISNEYQTDSFLSEAVIYS 149 Query: 148 ICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVI---QQMLEMPGHAWTVESLASIAH 204 L R A + N+ L + + + T++ +A IA Sbjct: 150 KILEVLVLIGRHHTAS-SCHFNVGRHKQQEYLERFLSICEYIDTHCTEDITLDEIAKIAG 208 Query: 205 MSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAF 264 S+ F +LF+ + T L + R+++A + + + V A G+A+ S+F + F Sbjct: 209 FSKYHFTRLFKQFTNNTFYKYLNQKRIELALTLLADPNISVTETAMQSGFANPSTFIRVF 268 Query: 265 VREFGCTPGEYRE 277 E GCTP E+R+ Sbjct: 269 KTEKGCTPTEFRK 281 >UniRef50_UPI000178AA9D transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA9D Length = 277 Score = 183 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 104/272 (38%), Gaps = 13/272 (4%) Query: 8 LMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVV 67 L + +I K + +W S + + +G +++ E PG +V Sbjct: 13 LANANLRLSIAKVDKVSQNW--RFFNMRPSYNALYFIREGEGWIKIDDQEYRP-SPGQIV 69 Query: 68 LLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAI 127 L+P S H +S V++ + A+ +L + + L V + +++ + Sbjct: 70 LMPAGSLHSISVVNDNTYRKFWCHFT----AKVDTLNLFQLIHLPHVLDVPDESYMEQLF 125 Query: 128 PFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLH-PRLGAVIQQM 186 L RS+ A + VR ++ V + LS+L +L V Q + Sbjct: 126 KELIDAYRSS--AWTAPLQR--NEILMKLVRHYLDIVPDRQISLSMLPDMQKLNTVFQYI 181 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 E +VE LA + H + F + F+ TP+ + K+R++ + L + Sbjct: 182 EEHINDNVSVEQLAGLIHYNPNYFIRFFKSKMKMTPVQYIIKVRIEKTKGLLMTTDLTLE 241 Query: 247 VIAESVGYASESSFHKAFVREFGCTPGEYRER 278 I VG + F + +PGE+R + Sbjct: 242 EIGRQVGME-VHYLCRVFKQFTNMSPGEFRNQ 272 >UniRef50_B7DQ49 Transcriptional regulator, AraC family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DQ49_9BACL Length = 344 Score = 183 bits (465), Expect = 5e-45, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 95/278 (34%), Gaps = 12/278 (4%) Query: 18 DKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRL 77 + +Q S + +T+G+ L++ E L G+V LL H + Sbjct: 66 YHVVLTPGPYQQTVNLHWHSEAEFIVVTRGSVCLQV-GSERHVLADGDVALLSGGELHSM 124 Query: 78 SHVDNESTC---IVCGTLRLQHSAR--------YFLTSLPETLFLAPVNHSVEYNWLREA 126 + + IV G L+ + L S L A + +L Sbjct: 125 AAPGKGPSECKAIVFGLDLLEGPSSDRVQQSYLSPLASGKLLLPGAIAHDHPVRQYLAAR 184 Query: 127 IPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQM 186 + + + G + R + ++ + + L AV+ + Sbjct: 185 LCEIVEALEEQPVGYELAVKGCLYDVLAQLFRAELLVEHSPRREMDDRRADTLKAVLTYI 244 Query: 187 LEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVV 246 + LA +A+MS F + F++++ P+ + + R+ AA + + Sbjct: 245 DAHLSDKLRLADLARVANMSEGHFCRFFKEMTHRKPMQYVNERRVARAADLLKDPNRSIT 304 Query: 247 VIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP 284 I +G+ S F K F CTP YR+ + + P Sbjct: 305 AIGMDLGFHDVSYFIKVFRSYKHCTPLAYRKALLKKPP 342 >UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFZ3_9CLOT Length = 296 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 94/287 (32%), Gaps = 29/287 (10%) Query: 17 IDKNCVLGSDWQLPHG-AGELSVIRWH-------ALTQGAAKLEMPTGEIFTLRPGNVVL 68 + + +G + +H + G A + E F ++ G+V + Sbjct: 7 HYFTQDPSFPFFIQYGFHDDAMPEHFHHDFFELVIVLNGTAT-HIVNSEEFFIKKGDVFV 65 Query: 69 LPQNSAHRLSHVDN----------ESTCIVCGTLRLQHSARYFLTSLPET-----LFLAP 113 + +H N E +C ++ + P Sbjct: 66 FNMDLSHGYKDPHNFKIINIMYKPERLDEICNDIKKSPGYQALFVLEPFFRKKYSFSNTL 125 Query: 114 VNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSL 173 ++ E + +E + G + R++I + + Sbjct: 126 SLSISSLEYVAELGARINEEYKRKDQGYQTMIYARFMEMVVYLSRQYIIENKLLHDTF-- 183 Query: 174 LLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQI 233 L I + + + +E LA AHMS F ++F++ GTTP + LR+ Sbjct: 184 ---VHLAKAILFLEDNYLNPIKLEKLADEAHMSVRHFNRIFKENYGTTPFNCILHLRVNH 240 Query: 234 AAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVR 280 A + L + IA G++ + F + F + G TP EYR R + Sbjct: 241 ACSLLKNSNLCIADIALESGFSDSNYFSRQFKKITGITPKEYRARYK 287 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.159 0.485 Lambda K H 0.267 0.0489 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,039,109,133 Number of Sequences: 3077464 Number of extensions: 110003156 Number of successful extensions: 371921 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 19451 Number of HSP's successfully gapped in prelim test: 2003 Number of HSP's that attempted gapping in prelim test: 315608 Number of HSP's gapped (non-prelim): 28408 length of query: 284 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 157 effective length of database: 649,558,428 effective search space: 101980673196 effective search space used: 101980673196 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 93 (40.2 bits)