Phyre 2 alignment of P76103 with d1u5ta1

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Job Description | P76103
Confidence | 2.00% | Date | Thu Jan 5 12:18:58 GMT 2012
Rank | 68 | Aligned Residues | 23
% Identity | 13% | Template | d1u5ta1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | Vacuolar sorting protein domain
Resolution | 3.60

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | A | P | G | I | A | A | M | K | A | A | G | Y | S | A | P | V | S | P | L | I | V | F | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | R | L | V | E | F | A | K | K | H | N | S | E | L | Q | A | S | P | E | F | R | S | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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