234 d2hoxa1 Probab=99.12   E-value=5.5e-07  Score=65.93  Aligned_columns=285  Identities=15%

Q ss_pred             HHHHHHHHHHHCC-------CCEEEEECCHHHHHHHHHHHHCCCCCE--------EEEECCCHHHHHHHHHHCCCEEEEE
Q ss_conf             9999999998298-------712894366028999999984489989--------9982720389999999779858992
Q batch____       208 GESEKYAARVFGA-------DRSWSVVVGTSGSNRTIMQACMTDNDV--------VVVDRNCHKSIEQGLMLTGAKPVYM  272 (755)
Q Consensus       208 ~eAq~laA~~fgA-------~~T~FlvNGST~gn~a~i~a~~~~Gd~--------VLv~RNcHKSv~~gl~Lsga~Pvyl  272 (755)
                      .+-++..+++++.       ++-.-++||+|.++.+++.++++|||.        |++..-+.-.....+.+.|.....+
T Consensus       103 ~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~  182 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW  182 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999998850886788776999468899999999986488861235677435730023778999998559974442


Q ss_pred             ECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             177374334367661107999999999862000013556831899988880-4013208999999986098199977884
Q batch____       273 VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWY  351 (755)
Q Consensus       273 ~P~~d~~~~ig~i~~~~i~~~~i~~~i~~~p~~~~~~~~~~kaviLTsPTY-~Gi~~Di~~I~~~~h~~~~~LlVDEAhG  351 (755)
                      ....+.....                          .....++++++||+. -|.+.+       +.+++..++.||++ 
T Consensus       183 ~~d~~~~~~~--------------------------~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y-  228 (425)
T d2hoxa1         183 AGNAANYVNV--------------------------SNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVY-  228 (425)
T ss_dssp             EEEGGGGTTC--------------------------SCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTT-
T ss_pred             CCCHHHHHHH--------------------------CCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCC-
T ss_conf             4798899972--------------------------4888579998178888560654-------23239689971432-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             10127833466575555565323683699830110122-54720035764887655999999999986668814899999
Q batch____       352 GYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICAS  430 (755)
Q Consensus       352 Ah~~F~p~~~p~sAm~~gad~~~~~~~ivvqStHKtL~-alTQ~S~LHv~~~~~~id~~~~~~al~~~qSTSPSY~LlAS  430 (755)
                          +.+.+ ...+-..+.+       +++.|.=|+++ +=....|+.+.+.   --.+++.+.........++-.-++.
T Consensus       229 ----~~~~~-~~~~~~~~~~-------i~~~S~SK~~g~~GlRiG~~i~~~~---~i~~~l~~~~~~~~~~~s~~~Q~aA  293 (425)
T d2hoxa1         229 ----YWPHY-TPIKYKADED-------ILLFTMSKFTGHSGSRFGWALIKDE---SVYNNLLNYMTKNTEGTPRETQLRS  293 (425)
T ss_dssp             ----CSTTT-SCCCSCBCCS-------EEEEEHHHHTSCGGGCCEEEEECCH---HHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred             ----CCCCC-CCCCCCCCCE-------EEEEECCCCCCCCCCCEEEEEECCH---HHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             ----34332-3333456854-------9998155101233231018996898---9999999864105777368999999


Q ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999-----98503048999999999999999998634331---------0122223333442112344444433221
Q batch____       431 NDVAVS-----MMDGNSGLSLTQEVIDEAVDFRQAMARLYKEF---------TADGSWFFKPWNKEVVTDPQTGKTYDFA  496 (755)
Q Consensus       431 LD~Ar~-----~m~~e~G~~l~~~~i~~a~~fR~~i~~~~~~~---------~~~~~~~f~~l~p~~~~~~~~~~~~~~~  496 (755)
                      +.+=..     ......+++.++...+....-|+.+.+.....         ...-..+|....|.              
T Consensus       294 ~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~--------------  359 (425)
T d2hoxa1         294 LKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPP--------------  359 (425)
T ss_dssp             HHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECC--------------
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------
T ss_conf             999602013456555548999999999999999999999863576300345655432210013778--------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCC
Q ss_conf             23322223333333345544445545566775222670799980487786100012679899999998729486735898
Q batch____       497 DAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDF  576 (755)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~whg~~~~~~~~~~lDP~KltI~~~g~g~~G~~~~~g~~g~~l~~lL~~~gI~~E~~~~~  576 (755)
                                                         -+.-+++.++.-...-           +..+|+++||.+-=.+.+
T Consensus       360 -----------------------------------~~~f~w~~~~~~~~~~-----------~~~lL~e~GI~v~pGs~F  393 (425)
T d2hoxa1         360 -----------------------------------SPSYAWVKCEWEEDKD-----------CYQTFQNGRINTQNGVGF  393 (425)
T ss_dssp             -----------------------------------CCSEEEEEECSGGGCS-----------HHHHHHHTTEECEEGGGG
T ss_pred             -----------------------------------CCCEEEEECCCCCHHH-----------HHHHHHHCCEEEECCCCC
T ss_conf             -----------------------------------7616998678980899-----------999999669499717023


Q ss_pred             EE---EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             69---99965787999999999999999
Q batch____       577 QI---MFLFSMGVTRGKWGTLVNTLCSF  601 (755)
Q Consensus       577 ~v---L~l~sig~t~~~~~~L~~aL~~i  601 (755)
                      ..   .+=+|++.++++++.+++.|.++
T Consensus       394 G~~~~~vRiSl~~~~e~ld~~l~rL~~~  421 (425)
T d2hoxa1         394 EASSRYVRLSLIKTQDDFDQLMYYLKDM  421 (425)
T ss_dssp             TSCTTEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             8988659999139989999999999998