Phyre 2 Results for P28629

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P28629
Date | Wed Jan 25 15:20:47 GMT 2012
Unique Job ID | 37e0a61e85fc00e8

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2vycA_
Top template information
PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
754 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | V | L | I | V | E | S | E | F | L | H | Q | D | T | W | V | G | N | A | V | E | R | L | A | D | A | L | S | Q | Q | N | V | T | V | I | K | S | T | S | F | D | D | G | F | A | I | L | S | S | N | E | A | I | D | C | L | M | F | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Y | Q | M | E | H | P | D | E | H | Q | N | V | R | Q | L | I | G | K | L | H | E | R | Q | Q | N | V | P | V | F | L | L | G | D | R | E | K | A | L | A | A | M | D | R | D | L | L | E | L | V | D | E | F | A | W | I | L | E | D | T | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | F | I | A | G | R | A | V | A | A | M | T | R | Y | R | Q | Q | L | L | P | P | L | F | S | A | L | M | K | Y | S | D | I | H | E | Y | S | W | A | A | P | G | H | Q | G | G | V | G | F | T | K | T | P | A | G | R | F | Y | H | D | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | Y | G | E | N | L | F | R | T | D | M | G | I | E | R | T | S | L | G | S | L | L | D | H | T | G | A | F | G | E | S | E | K | Y | A | A | R | V | F | G | A | D | R | S | W | S | V | V | V | G | T | S | G | S | N | R | T | I | M | Q | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | C | M | T | D | N | D | V | V | V | V | D | R | N | C | H | K | S | I | E | Q | G | L | M | L | T | G | A | K | P | V | Y | M | V | P | S | R | N | R | Y | G | I | I | G | P | I | Y | P | Q | E | M | Q | P | E | T | L | Q | K | K | I | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | E | S | P | L | T | K | D | K | A | G | Q | K | P | S | Y | C | V | V | T | N | C | T | Y | D | G | V | C | Y | N | A | K | E | A | Q | D | L | L | E | K | T | S | D | R | L | H | F | D | E | A | W | Y | G | Y | A | R | F | N | P | I | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | A | D | H | Y | A | M | R | G | E | P | G | D | H | N | G | P | T | V | F | A | T | H | S | T | H | K | L | L | N | A | L | S | Q | A | S | Y | I | H | V | R | E | G | R | G | A | I | N | F | S | R | F | N | Q | A | Y | M | M | H | A | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | T | S | P | L | Y | A | I | C | A | S | N | D | V | A | V | S | M | M | D | G | N | S | G | L | S | L | T | Q | E | V | I | D | E | A | V | D | F | R | Q | A | M | A | R | L | Y | K | E | F | T | A | D | G | S | W | F | F | K | P | W | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | K | E | V | V | T | D | P | Q | T | G | K | T | Y | D | F | A | D | A | P | T | K | L | L | T | T | V | Q | D | C | W | V | M | H | P | G | E | S | W | H | G | F | K | D | I | P | D | N | W | S | M | L | D | P | I | K | V | S | I | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? |  | ? | ? | ? | ? | ? | ? |  | ? |  |  |  | ? |  | ? | ? | ? |  | ? |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | P | G | M | G | E | D | G | E | L | E | E | T | G | V | P | A | A | L | V | T | A | W | L | G | R | H | G | I | V | P | T | R | T | T | D | F | Q | I | M | F | L | F | S | M | G | V | T | R | G | K | W | G | T | L | V | N | T | L | C | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660
Sequence |  | F | K | R | H | Y | D | A | N | T | P | L | A | Q | V | M | P | E | L | V | E | Q | Y | P | D | T | Y | A | N | M | G | I | H | D | L | G | D | T | M | F | A | W | L | K | E | N | N | P | G | A | R | L | N | E | A | Y | S | G | L | P | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  | ? |  |  |  |  |  | ? |  |  |  |  | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720
Sequence |  | A | E | V | T | P | R | E | A | Y | N | A | I | V | D | N | N | V | E | L | V | S | I | E | N | L | P | G | R | I | A | A | N | S | V | I | P | Y | P | P | G | I | P | M | L | L | S | G | E | N | F | G | D | K | N | S | P | Q | V | S | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | .
Sequence |  | L | R | S | L | Q | S | W | D | H | H | F | P | G | F | E | H | E | T | E | G | T | E | I | I | D | G | I | Y | H | V | M | C | V | K | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2vycA_ |

### PDB 2vyc chain A

Region: 1 - 755
Aligned: 754
Modelled: 755
Confidence: 100.0%
Identity: 100%
PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli

Phyre2
2 |
| c3n75E_ |

### PDB 3n75 chain E

Region: 16 - 754
Aligned: 692
Modelled: 711
Confidence: 100.0%
Identity: 36%
PDB header:lyase
Chain: E: PDB Molecule:lysine decarboxylase, inducible;
PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci

Phyre2
3 |
| c1c4kA_ |

### PDB 1c4k chain A

Region: 48 - 754
Aligned: 686
Modelled: 701
Confidence: 100.0%
Identity: 29%
PDB header:lyase
Chain: A: PDB Molecule:protein (ornithine decarboxylase);
PDBTitle: ornithine decarboxylase mutant (gly121tyr)

Phyre2
4 |
| d1c4ka2 |

### PDB 1c4k chain A domain 2

Region: 140 - 608
Aligned: 454
Modelled: 455
Confidence: 100.0%
Identity: 32%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Ornithine decarboxylase major domain

Phyre2
5 |
| c2x3lA_ |

### PDB 2x3l chain A

Region: 141 - 750
Aligned: 417
Modelled: 475
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus

Phyre2
6 |
| d1rv3a_ |

### PDB 1rv3 chain A

Region: 208 - 702
Aligned: 358
Modelled: 396
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
7 |
| d1bj4a_ |

### PDB 1bj4 chain A

Region: 210 - 701
Aligned: 356
Modelled: 389
Confidence: 100.0%
Identity: 14%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
8 |
| d1ejia_ |

### PDB 1eji chain A

Region: 208 - 702
Aligned: 358
Modelled: 387
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
9 |
| d2z67a1 |

### PDB 2z67 chain A domain 1

Region: 211 - 601
Aligned: 312
Modelled: 353
Confidence: 100.0%
Identity: 14%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: SepSecS-like

Phyre2
10 |
| d2a7va1 |

### PDB 2a7v chain A domain 1

Region: 210 - 701
Aligned: 324
Modelled: 347
Confidence: 100.0%
Identity: 20%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
11 |
| c2a7vA_ |

### PDB 2a7v chain A

Region: 210 - 701
Aligned: 324
Modelled: 347
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: human mitochondrial serine hydroxymethyltransferase 2

Phyre2
12 |
| d1c4ka3 |

### PDB 1c4k chain A domain 3

Region: 609 - 751
Aligned: 140
Modelled: 143
Confidence: 100.0%
Identity: 29%
Fold: Ornithine decarboxylase C-terminal domain
Superfamily: Ornithine decarboxylase C-terminal domain
Family: Ornithine decarboxylase C-terminal domain

Phyre2
13 |
| c3h7fB_ |

### PDB 3h7f chain B

Region: 208 - 623
Aligned: 321
Modelled: 368
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis

Phyre2
14 |
| c3hl2D_ |

### PDB 3hl2 chain D

Region: 206 - 607
Aligned: 315
Modelled: 335
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase;
PDBTitle: the crystal structure of the human sepsecs-trnasec complex

Phyre2
15 |
| d3bc8a1 |

### PDB 3bc8 chain A domain 1

Region: 208 - 609
Aligned: 338
Modelled: 357
Confidence: 100.0%
Identity: 11%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: SepSecS-like

Phyre2
16 |
| c3ecdC_ |

### PDB 3ecd chain C

Region: 206 - 621
Aligned: 297
Modelled: 337
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei

Phyre2
17 |
| c3n0lA_ |

### PDB 3n0l chain A

Region: 208 - 623
Aligned: 303
Modelled: 335
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni

Phyre2
18 |
| d1dfoa_ |

### PDB 1dfo chain A

Region: 206 - 620
Aligned: 318
Modelled: 357
Confidence: 100.0%
Identity: 19%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
19 |
| d1kl1a_ |

### PDB 1kl1 chain A

Region: 133 - 620
Aligned: 384
Modelled: 430
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
20 |
| c2dkjB_ |

### PDB 2dkj chain B

Region: 206 - 623
Aligned: 319
Modelled: 353
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |
112 |
113 |
114 |
115 |
116 |
117 |
118 |
119 |
120 |
121 |
122 |
123 |
124 |
125 |
126 |
127 |
128 |
129 |
130 |
131 |
132 |
133 |
134 |
135 |
136 |
137 |
138 |
139 |
140 |
141 |
142 |
143 |
144 |
145 |
146 |
147 |
148 |
149 |
150 |
151 |
152 |
153 |
154 |
155 |
156 |
157 |
158 |
159 |
160 |
161 |
162 |
163 |
164 |
165 |
166 |
167 |
168 |
169 |
170 |
171 |
172 |
173 |
174 |
175 |
176 |
177 |
178 |
179 |
180 |
181 |
182 |
183 |
184 |
185 |
186 |
187 |
188 |
189 |
190 |
191 |
192 |
193 |
194 |
195 |
196 |
197 |
198 |
199 |
200 |
201 |
202 |
203 |
204 |
205 |
206 |
207 |
208 |
209 |
210 |
211 |
212 |
213 |
214 |
215 |
216 |
217 |
218 |
219 |
220 |
221 |
222 |
223 |
224 |
225 |
226 |
227 |
228 |
229 |
230 |
231 |
232 |
233 |
234 |
235 |
236 |
237 |
238 |
239 |
240 |
241 |
242 |
243 |
244 |
245 |
246 |
247 |
248 |
249 |
250 |
251 |
252 |
253 |
254 |
255 |
256 |
257 |
258 |
259 |
260 |
261 |
262 |
263 |
264 |
265 |
266 |
267 |
268 |
269 |
270 |
271 |
272 |
273 |
274 |
275 |
276 |
277 |
278 |
279 |
280 |
281 |
282 |
283 |
284 |
285 |
286 |
287 |
288 |
289 |
290 |
291 |
292 |
293 |
294 |
295 |
296 |
297 |
298 |
299 |
300 |
301 |
302 |
303 |
304 |
305 |
306 |
307 |
308 |
309 |
310 |
311 |
312 |
313 |
314 |
315 |
316 |
317 |
318 |
319 |
320 |
321 |
322 |
323 |
324 |
325 |
326 |
327 |
328 |
329 |
330 |
331 |
332 |
333 |
334 |
335 |
336 |
337 |
338 |
339 |
340 |
341 |
342 |
343 |
344 |
345 |
346 |
347 |
348 |
349 |
350 |
351 |
352 |
353 |
354 |
355 |
356 |
357 |
358 |
359 |
360 |
361 |
362 |
363 |
364 |
365 |
366 |
367 |
368 |
369 |
370 |
371 |
372 |
373 |
374 |
375 |
376 |
377 |
378 |
379 |
380 |
381 |
382 |
383 |
384 |
385 |
386 |
387 |
388 |
389 |
390 |
391 |
392 |
393 |
394 |
395 |
396 |
397 |
398 |
399 |
400 |
401 |
402 |
403 |
404 |
405 |
406 |
407 |
408 |
409 |
410 |
411 |
412 |
413 |
414 |
415 |
416 |
417 |
418 |
419 |
420 |
421 |
422 |
423 |
424 |
425 |
426 |
427 |
428 |
429 |
430 |
431 |
432 |
433 |
434 |
435 |
436 |
437 |
438 |
439 |
440 |
441 |
442 |
443 |
444 |
445 |
446 |
447 |
448 |
449 |
450 |
451 |
452 |
453 |
454 |
455 |
456 |
457 |
458 |
459 |
460 |
461 |
462 |
463 |
464 |
465 |
466 |
467 |
468 |
469 |
470 |
471 |
472 |
473 |
474 |
475 |
476 |
477 |
478 |
479 |
480 |
481 |
482 |
483 |
484 |
485 |
486 |
487 |
488 |
489 |
490 |
491 |
492 |
493 |
494 |
495 |
496 |
497 |
498 |
499 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2vycA_ |
|  | 100.0 | 100 | PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
2 | c3n75E_ |
|  | 100.0 | 36 | PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
3 | c1c4kA_ |
|  | 100.0 | 29 | PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr)
4 | d1c4ka2 |
|  | 100.0 | 32 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Ornithine decarboxylase major domain
5 | c2x3lA_ |
|  | 100.0 | 20 | PDB header:lyase Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
6 | d1rv3a_ |
|  | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
7 | d1bj4a_ |
|  | 100.0 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
8 | d1ejia_ |
|  | 100.0 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
9 | d2z67a1 |
|  | 100.0 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like
10 | d2a7va1 |
|  | 100.0 | 20 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
11 | c2a7vA_ |
|  | 100.0 | 20 | PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2
12 | d1c4ka3 |
|  | 100.0 | 29 | Fold:Ornithine decarboxylase C-terminal domain Superfamily:Ornithine decarboxylase C-terminal domain Family:Ornithine decarboxylase C-terminal domain
13 | c3h7fB_ |
|  | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
14 | c3hl2D_ |
|  | 100.0 | 13 | PDB header:transferase Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase; PDBTitle: the crystal structure of the human sepsecs-trnasec complex
15 | d3bc8a1 |
|  | 100.0 | 11 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like
16 | c3ecdC_ |
|  | 100.0 | 18 | PDB header:transferase Chain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
17 | c3n0lA_ |
|  | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
18 | d1dfoa_ |
|  | 100.0 | 19 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
19 | d1kl1a_ |
|  | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
20 | c2dkjB_ |
|  | 100.0 | 17 | PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
21 | d2e7ja1 |
| not modelled | 100.0 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like
22 | c3mafB_ |
| not modelled | 99.9 | 18 | PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)
23 | c3mc6C_ |
| not modelled | 99.9 | 16 | PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1
24 | d1vjoa_ |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
25 | d1wyub1 |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P)
26 | c3f9tB_ |
| not modelled | 99.9 | 12 | PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
27 | d1wyua1 |
| not modelled | 99.9 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P)
28 | d1js3a_ |
| not modelled | 99.9 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase
29 | c2jisA_ |
| not modelled | 99.9 | 16 | PDB header:lyase Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase; PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
30 | d1o69a_ |
| not modelled | 99.9 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
31 | c2z9wA_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
32 | c3nnkC_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
33 | c3e9kA_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
34 | c3hbxB_ |
| not modelled | 99.9 | 17 | PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana
35 | c3bcxA_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase
36 | d1m6sa_ |
| not modelled | 99.9 | 19 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
37 | c2hzpA_ |
| not modelled | 99.9 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase
38 | c2w8wA_ |
| not modelled | 99.9 | 17 | PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser
39 | d1h0ca_ |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
40 | d1mdoa_ |
| not modelled | 99.9 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
41 | d1bs0a_ |
| not modelled | 99.9 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
42 | c3k40B_ |
| not modelled | 99.9 | 15 | PDB header:lyase Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase; PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase
43 | c2po3B_ |
| not modelled | 99.9 | 16 | PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
44 | c3l8aB_ |
| not modelled | 99.9 | 13 | PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans
45 | c3islA_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:purine catabolism protein pucg; PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
46 | c3nysA_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
47 | c3uwcA_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
48 | d2bwna1 |
| not modelled | 99.9 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
49 | c2ogeC_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
50 | c2c7tA_ |
| not modelled | 99.9 | 17 | PDB header:transferase Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
51 | d2ch1a1 |
| not modelled | 99.9 | 11 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
52 | d1tpla_ |
| not modelled | 99.9 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
53 | c3a2bA_ |
| not modelled | 99.9 | 15 | PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
54 | d1svva_ |
| not modelled | 99.9 | 11 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
55 | c3hqtB_ |
| not modelled | 99.9 | 16 | PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa
56 | d1fc4a_ |
| not modelled | 99.9 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
57 | c3frkB_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: B: PDB Molecule:qdtb; PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
58 | c3pj0D_ |
| not modelled | 99.9 | 12 | PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
59 | c2dr1A_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
60 | c2okkA_ |
| not modelled | 99.9 | 15 | PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
61 | c3tqxA_ |
| not modelled | 99.9 | 17 | PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
62 | d2v1pa1 |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
63 | c2r0tA_ |
| not modelled | 99.9 | 15 | PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
64 | c3dr4B_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: B: PDB Molecule:putative perosamine synthetase; PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
65 | d1pmma_ |
| not modelled | 99.8 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase
66 | d1v72a1 |
| not modelled | 99.8 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
67 | c3lwsF_ |
| not modelled | 99.8 | 15 | PDB header:lyase Chain: F: PDB Molecule:aromatic amino acid beta-eliminating PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
68 | c3kaxB_ |
| not modelled | 99.8 | 11 | PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
69 | c2cb1A_ |
| not modelled | 99.8 | 16 | PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
70 | c2huuA_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
71 | c3ffrA_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
72 | d1c7ga_ |
| not modelled | 99.8 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
73 | d2aeua1 |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SelA-like
74 | d1m32a_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
75 | d1b9ha_ |
| not modelled | 99.8 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
76 | d1qgna_ |
| not modelled | 99.8 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
77 | c3ke3A_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
78 | c2qmaB_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus
79 | c3ju7B_ |
| not modelled | 99.8 | 16 | PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
80 | d1cs1a_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
81 | d2fnua1 |
| not modelled | 99.8 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
82 | d1c7na_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
83 | d1cl1a_ |
| not modelled | 99.8 | 9 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
84 | c3f0hA_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
85 | d1qz9a_ |
| not modelled | 99.8 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
86 | c1d2fB_ |
| not modelled | 99.8 | 12 | PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
87 | d1bw0a_ |
| not modelled | 99.8 | 11 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
88 | d1jf9a_ |
| not modelled | 99.8 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
89 | c3eucB_ |
| not modelled | 99.8 | 11 | PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
90 | c1i41J_ |
| not modelled | 99.8 | 16 | PDB header:lyase Chain: J: PDB Molecule:cystathionine gamma-synthase; PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa
91 | c3aemD_ |
| not modelled | 99.8 | 14 | PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
92 | d1d2fa_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
93 | c3b46B_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
94 | d1lc5a_ |
| not modelled | 99.8 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
95 | d1iaya_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
96 | c3asaA_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis
97 | c3op7A_ |
| not modelled | 99.8 | 12 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
98 | c3pdxA_ |
| not modelled | 99.8 | 10 | PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase
99 | c3dc1A_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
100 | d1gc0a_ |
| not modelled | 99.8 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
101 | c2fyfB_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: B: PDB Molecule:phosphoserine aminotransferase; PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
102 | c3jtxB_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
103 | d1v2da_ |
| not modelled | 99.8 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
104 | c3ri6A_ |
| not modelled | 99.8 | 12 | PDB header:transferase Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase; PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes
105 | c3dzzB_ |
| not modelled | 99.8 | 12 | PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
106 | d2csta_ |
| not modelled | 99.7 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
107 | c3fkdC_ |
| not modelled | 99.7 | 13 | PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
108 | d1elua_ |
| not modelled | 99.7 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
109 | c3qm2A_ |
| not modelled | 99.7 | 10 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
110 | c3caiA_ |
| not modelled | 99.7 | 17 | PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
111 | c3h14A_ |
| not modelled | 99.7 | 18 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
112 | c3qguB_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
113 | c1ibjC_ |
| not modelled | 99.7 | 12 | PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase; PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana
114 | d2r5ea1 |
| not modelled | 99.7 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
115 | d1ibja_ |
| not modelled | 99.7 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
116 | c3hdoB_ |
| not modelled | 99.7 | 14 | PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
117 | c2gqnB_ |
| not modelled | 99.7 | 10 | PDB header:lyase Chain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
118 | d1xi9a_ |
| not modelled | 99.7 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
119 | d1x0ma1 |
| not modelled | 99.7 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
120 | c3cbfA_ |
| not modelled | 99.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0