26/01/2012 00:55:14 : INFO  : Run start: Thu Jan 26 00:55:13 GMT 2012
26/01/2012 00:55:20 : INFO  : Initialised job
26/01/2012 00:55:21 : INFO  : Renaming log file 'phyre2_20120126_005513.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/37e0a61e85fc00e8/phyre_20120126_005513.log'
26/01/2012 00:55:23 : INFO  : Initialised job:
Sequence
>batch____
MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFS
YQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTA
DFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDY
YGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA
CMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKIS
ESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY
ADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHAT
TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWN
KEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILA
PGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS
FKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPV
AEVTPREAYNAIVDNNVELVSIENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSY
LRSLQSWDHHFPGFEHETEGTEIIDGIYHVMCVKA

26/01/2012 00:55:24 : INFO  : Checked sequence
26/01/2012 00:55:27 : INFO  : Finding homologues with PSI-BLAST
26/01/2012 00:55:28 : INFO  : PSI-BLAST 3 iterations
26/01/2012 00:58:20 : INFO  : PSI-BLAST 5 iterations
26/01/2012 01:02:32 : INFO  : Finished PSI-BLAST
26/01/2012 01:02:34 : INFO  : Running Buildali to generate a3m file
26/01/2012 01:12:39 : INFO  : Converting to HMM
26/01/2012 01:12:45 : INFO  : Calibrating HMM
26/01/2012 01:13:15 : INFO  : Searching HMM database
26/01/2012 01:31:06 : INFO  : Finished buildali
26/01/2012 01:31:08 : INFO  : Predicting secondary structure
26/01/2012 01:31:17 : INFO  : Predicted secondary structure (PSI-Pred)
26/01/2012 01:31:19 : INFO  : Predicting Disordered regions
26/01/2012 01:31:23 : INFO  : Predicted Disorder (Disopred)
26/01/2012 01:31:24 : INFO  : Running memsat_svm check
26/01/2012 01:35:02 : INFO  : Running memsat_svm full
26/01/2012 01:37:48 : INFO  : Predicted Transmembrane (memsat_svm) ID '37e0a61e85fc00e8'
26/01/2012 01:37:50 : INFO  : Initialising fold library search
26/01/2012 01:37:54 : INFO  : Initialised search input
26/01/2012 01:37:56 : INFO  : Building Ensemble models
26/01/2012 01:38:00 : INFO  : Building hh.c2vycA_.model.1.pdb
26/01/2012 01:38:17 : INFO  : Building c2vycA_.1.pdb
26/01/2012 01:38:33 : INFO  : Building c3n75E_.2.pdb
26/01/2012 01:38:49 : INFO  : Building c1c4kA_.3.pdb
26/01/2012 01:39:05 : INFO  : Building d1c4ka2.4.pdb
26/01/2012 01:39:20 : INFO  : Building c2x3lA_.5.pdb
26/01/2012 01:39:35 : INFO  : Building d1rv3a_.6.pdb
26/01/2012 01:39:50 : INFO  : Building d1bj4a_.7.pdb
26/01/2012 01:40:05 : INFO  : Building d1ejia_.8.pdb
26/01/2012 01:40:21 : INFO  : Building d2z67a1.9.pdb
26/01/2012 01:40:36 : INFO  : Building d2a7va1.10.pdb
26/01/2012 01:40:52 : INFO  : Building c2a7vA_.11.pdb
26/01/2012 01:41:08 : INFO  : Building d1c4ka3.12.pdb
26/01/2012 01:41:23 : INFO  : Building c3h7fB_.13.pdb
26/01/2012 01:41:39 : INFO  : Building c3hl2D_.14.pdb
26/01/2012 01:41:55 : INFO  : Building d3bc8a1.15.pdb
26/01/2012 01:42:10 : INFO  : Building c3ecdC_.16.pdb
26/01/2012 01:42:27 : INFO  : Building c3n0lA_.17.pdb
26/01/2012 01:42:42 : INFO  : Building d1dfoa_.18.pdb
26/01/2012 01:42:58 : INFO  : Building d1kl1a_.19.pdb
26/01/2012 01:43:12 : INFO  : Building c2dkjB_.20.pdb
26/01/2012 01:43:48 : INFO  : Finished HH model building
26/01/2012 01:43:50 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
26/01/2012 01:44:38 : INFO  : html domain output complete ID '37e0a61e85fc00e8'
26/01/2012 05:09:35 : INFO  : Run end  : Thu Jan 26 05:09:35 GMT 2012
