BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (109 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B7ML00 UPF0263 protein yciU n=144 Tax=Bacteria RepID=YC... 215 4e-55 UniRef50_C2LGD8 DsDNA-mimic protein n=7 Tax=Enterobacteriaceae R... 109 3e-23 UniRef50_Q65TT7 UPF0263 protein MS1016 n=90 Tax=Gammaproteobacte... 103 2e-21 UniRef50_C4L9W2 Putative uncharacterized protein n=1 Tax=Tolumon... 90 3e-17 UniRef50_A6F7X0 Putative uncharacterized protein n=1 Tax=Moritel... 84 1e-15 UniRef50_A4SMW3 Putative uncharacterized protein n=2 Tax=Aeromon... 80 2e-14 UniRef50_A0Y578 DsDNA-mimic protein n=3 Tax=Alteromonadales RepI... 75 4e-13 UniRef50_A0KK52 Putative uncharacterized protein n=2 Tax=Aeromon... 62 4e-09 >UniRef50_B7ML00 UPF0263 protein yciU n=144 Tax=Bacteria RepID=YCIU_ECO45 Length = 109 Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 108/109 (99%), Positives = 108/109 (99%) Query: 1 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEH 60 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDW EH Sbjct: 1 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWLEH 60 Query: 61 VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE Sbjct: 61 VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 >UniRef50_C2LGD8 DsDNA-mimic protein n=7 Tax=Enterobacteriaceae RepID=C2LGD8_PROMI Length = 107 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 54/107 (50%), Positives = 73/107 (68%) Query: 3 MDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVD 62 M+ ++E+E LEQAYD+FL AADNLD AD LLFNLQFEERG AE+ DWQ V Sbjct: 1 MNQPTLISEEEALEQAYDLFLAQAADNLDVADQLLFNLQFEERGAAEVVTLGNDWQFIVG 60 Query: 63 FDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 ++ F+EV+IGLA E+ +I+D+F R+L+ R+ + HIIW+ Sbjct: 61 LPVSSARFSEVIIGLAPDENADIDDIFGRVLISRDPLQPMYHIIWKS 107 >UniRef50_Q65TT7 UPF0263 protein MS1016 n=90 Tax=Gammaproteobacteria RepID=Y1016_MANSM Length = 107 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 75/103 (72%), Gaps = 1/103 (0%) Query: 7 NRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLN 66 N+L D ++ AYDIFLE+A +NLDPAD++LFNLQFEERG E + A++W E + ++ Sbjct: 6 NKLDPDAAIDIAYDIFLEMAPENLDPADIMLFNLQFEERGAVEFVETADNWDEEIGVLID 65 Query: 67 PDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 PD +AEV +GL +E+ E++D+FA+ L+ +D + H++W+E Sbjct: 66 PDEYAEVWVGLV-NENDEMDDIFAKFLISHREDDREFHVVWKE 107 >UniRef50_C4L9W2 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L9W2_TOLAT Length = 106 Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/97 (45%), Positives = 69/97 (71%), Gaps = 1/97 (1%) Query: 12 DETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFA 71 DE ++QAY++FLELAADNLD A + FN +F E GG +P DW+E + ++ P+ + Sbjct: 9 DELIDQAYELFLELAADNLDEATIARFNQEFPEHGGLGDCEPEADWEEEIQAEVRPEEWL 68 Query: 72 EVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWR 108 EV +GL +S+D E+N +FAR+L+ R+ + + CHI+W+ Sbjct: 69 EVRVGLLNSDD-ELNYLFARMLISRDPESQECHILWQ 104 >UniRef50_A6F7X0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F7X0_9GAMM Length = 104 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 1/99 (1%) Query: 10 TEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPDF 69 TEDE ++ AYD FLE A L PAD +LF +QFE+RG ++ D DW +V +N + Sbjct: 5 TEDELIDFAYDAFLEDAQKQLSPADQILFAMQFEDRGAVDIVDLGSDWPANVAMGINENE 64 Query: 70 FAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWR 108 + E+ IGL D D +ND+F R+L+ ++ + K HI+W+ Sbjct: 65 YCELHIGLVDDND-LLNDIFGRVLVKKKANDKFIHILWK 102 >UniRef50_A4SMW3 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A4SMW3_AERS4 Length = 108 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 2/106 (1%) Query: 3 MDLNNRL-TEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHV 61 M LN+ + + +E L+ A ++F+ELA+DNL ++ +FN +F RG DPA+DW+ V Sbjct: 1 MSLNDEMHSVEELLDTALELFMELASDNLPEQEIAVFNREFNSRGLLAETDPADDWEADV 60 Query: 62 DFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIW 107 F ++ +AE+ IGL ++E E +FAR+LL R D K CHI W Sbjct: 61 GFAVSDTEYAEIWIGLGNAEQ-EYEHLFARMLLSRRVDEKFCHIEW 105 >UniRef50_A0Y578 DsDNA-mimic protein n=3 Tax=Alteromonadales RepID=A0Y578_9GAMM Length = 106 Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 5/102 (4%) Query: 9 LTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPD 68 T +E QAYDIFLELA NL DV FN E+ G E +P + WQ+ V ++ P+ Sbjct: 7 FTIEEATHQAYDIFLELAPSNLSDDDVENFNEYREDLGFIEEDEPDDQWQDFVALEIEPE 66 Query: 69 FFAEVVIGLA-DSEDGEINDVFARILLCREKDHKLCHIIWRE 109 F +V++GL D+ED +FA+IL+ R+KD CHI+W+E Sbjct: 67 HFIQVLVGLEFDNEDV----LFAKILISRDKDAPFCHILWKE 104 >UniRef50_A0KK52 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A0KK52_AERHH Length = 166 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 4 DLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDF 63 D + T D+ +E AYD FLE AAD L P ++ L+FE+RG E P DW + Sbjct: 58 DFMEQRTPDQLVEWAYDQFLEQAADMLAPEQIVDITLEFEQRGAVEATLPNADWSAELGV 117 Query: 64 DLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIW 107 ++ + + EV +GL D ++ E +FA LL R + H+ W Sbjct: 118 PVDMERWVEVWVGLLDHQE-EFEVIFATFLLPRHLNEHDVHVRW 160 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7ML00 UPF0263 protein yciU n=144 Tax=Bacteria RepID=YC... 135 6e-31 UniRef50_A0KK52 Putative uncharacterized protein n=2 Tax=Aeromon... 133 1e-30 UniRef50_C2LGD8 DsDNA-mimic protein n=7 Tax=Enterobacteriaceae R... 130 1e-29 UniRef50_A6F7X0 Putative uncharacterized protein n=1 Tax=Moritel... 112 3e-24 UniRef50_Q65TT7 UPF0263 protein MS1016 n=90 Tax=Gammaproteobacte... 112 3e-24 UniRef50_A4SMW3 Putative uncharacterized protein n=2 Tax=Aeromon... 110 1e-23 UniRef50_C4L9W2 Putative uncharacterized protein n=1 Tax=Tolumon... 108 6e-23 UniRef50_A0Y578 DsDNA-mimic protein n=3 Tax=Alteromonadales RepI... 102 3e-21 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_B7ML00 UPF0263 protein yciU n=144 Tax=Bacteria RepID=YCIU_ECO45 Length = 109 Score = 135 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 108/109 (99%), Positives = 108/109 (99%) Query: 1 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEH 60 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDW EH Sbjct: 1 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWLEH 60 Query: 61 VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE Sbjct: 61 VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 >UniRef50_A0KK52 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A0KK52_AERHH Length = 166 Score = 133 bits (335), Expect = 1e-30, Method: Composition-based stats. Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 4 DLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDF 63 D + T D+ +E AYD FLE AAD L P ++ L+FE+RG E P DW + Sbjct: 58 DFMEQRTPDQLVEWAYDQFLEQAADMLAPEQIVDITLEFEQRGAVEATLPNADWSAELGV 117 Query: 64 DLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIW 107 ++ + + EV +GL D ++ E +FA LL R + H+ W Sbjct: 118 PVDMERWVEVWVGLLDHQE-EFEVIFATFLLPRHLNEHDVHVRW 160 >UniRef50_C2LGD8 DsDNA-mimic protein n=7 Tax=Enterobacteriaceae RepID=C2LGD8_PROMI Length = 107 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 54/107 (50%), Positives = 73/107 (68%) Query: 3 MDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVD 62 M+ ++E+E LEQAYD+FL AADNLD AD LLFNLQFEERG AE+ DWQ V Sbjct: 1 MNQPTLISEEEALEQAYDLFLAQAADNLDVADQLLFNLQFEERGAAEVVTLGNDWQFIVG 60 Query: 63 FDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 ++ F+EV+IGLA E+ +I+D+F R+L+ R+ + HIIW+ Sbjct: 61 LPVSSARFSEVIIGLAPDENADIDDIFGRVLISRDPLQPMYHIIWKS 107 >UniRef50_A6F7X0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F7X0_9GAMM Length = 104 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 1/99 (1%) Query: 10 TEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPDF 69 TEDE ++ AYD FLE A L PAD +LF +QFE+RG ++ D DW +V +N + Sbjct: 5 TEDELIDFAYDAFLEDAQKQLSPADQILFAMQFEDRGAVDIVDLGSDWPANVAMGINENE 64 Query: 70 FAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWR 108 + E+ IGL D D +ND+F R+L+ ++ + K HI+W+ Sbjct: 65 YCELHIGLVDDND-LLNDIFGRVLVKKKANDKFIHILWK 102 >UniRef50_Q65TT7 UPF0263 protein MS1016 n=90 Tax=Gammaproteobacteria RepID=Y1016_MANSM Length = 107 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 75/105 (71%), Gaps = 1/105 (0%) Query: 5 LNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFD 64 N+L D ++ AYDIFLE+A +NLDPAD++LFNLQFEERG E + A++W E + Sbjct: 4 QINKLDPDAAIDIAYDIFLEMAPENLDPADIMLFNLQFEERGAVEFVETADNWDEEIGVL 63 Query: 65 LNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 ++PD +AEV +GL + E+ E++D+FA+ L+ +D + H++W+E Sbjct: 64 IDPDEYAEVWVGLVN-ENDEMDDIFAKFLISHREDDREFHVVWKE 107 >UniRef50_A4SMW3 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A4SMW3_AERS4 Length = 108 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 2/106 (1%) Query: 3 MDLNNRL-TEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHV 61 M LN+ + + +E L+ A ++F+ELA+DNL ++ +FN +F RG DPA+DW+ V Sbjct: 1 MSLNDEMHSVEELLDTALELFMELASDNLPEQEIAVFNREFNSRGLLAETDPADDWEADV 60 Query: 62 DFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIW 107 F ++ +AE+ IGL ++E E +FAR+LL R D K CHI W Sbjct: 61 GFAVSDTEYAEIWIGLGNAEQ-EYEHLFARMLLSRRVDEKFCHIEW 105 >UniRef50_C4L9W2 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L9W2_TOLAT Length = 106 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 44/97 (45%), Positives = 69/97 (71%), Gaps = 1/97 (1%) Query: 12 DETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFA 71 DE ++QAY++FLELAADNLD A + FN +F E GG +P DW+E + ++ P+ + Sbjct: 9 DELIDQAYELFLELAADNLDEATIARFNQEFPEHGGLGDCEPEADWEEEIQAEVRPEEWL 68 Query: 72 EVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWR 108 EV +GL +S+D E+N +FAR+L+ R+ + + CHI+W+ Sbjct: 69 EVRVGLLNSDD-ELNYLFARMLISRDPESQECHILWQ 104 >UniRef50_A0Y578 DsDNA-mimic protein n=3 Tax=Alteromonadales RepID=A0Y578_9GAMM Length = 106 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 3/107 (2%) Query: 3 MDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVD 62 M T +E QAYDIFLELA NL DV FN E+ G E +P + WQ+ V Sbjct: 1 MSGPRLFTIEEATHQAYDIFLELAPSNLSDDDVENFNEYREDLGFIEEDEPDDQWQDFVA 60 Query: 63 FDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE 109 ++ P+ F +V++GL + + +FA+IL+ R+KD CHI+W+E Sbjct: 61 LEIEPEHFIQVLVGLEFDNE---DVLFAKILISRDKDAPFCHILWKE 104 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.136 0.374 Lambda K H 0.267 0.0416 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 443,027,028 Number of Sequences: 3077464 Number of extensions: 15947036 Number of successful extensions: 38431 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38404 Number of HSP's gapped (non-prelim): 16 length of query: 109 length of database: 1,040,396,356 effective HSP length: 77 effective length of query: 32 effective length of database: 803,431,628 effective search space: 25709812096 effective search space used: 25709812096 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 87 (38.1 bits)