BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (57 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P77695 Protein gnsB n=89 Tax=Enterobacteriaceae RepID=G...    79   5e-14

>UniRef50_P77695 Protein gnsB n=89 Tax=Enterobacteriaceae RepID=GNSB_ECOLI
          Length = 57

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 1  MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKMTGLESYDVKIKIM 57
          MNIE LK +AE +I+++I +KI EL K TGKEV+ I+FTAREKMTGLESYDVKI ++
Sbjct: 1  MNIENLKTKAEADISEYITKKIIELKKKTGKEVTSIQFTAREKMTGLESYDVKINLI 57


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P77695 Protein gnsB n=89 Tax=Enterobacteriaceae RepID=G...    67   2e-10

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_P77695 Protein gnsB n=89 Tax=Enterobacteriaceae RepID=GNSB_ECOLI
          Length = 57

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 1  MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKMTGLESYDVKIKIM 57
          MNIE LK +AE +I+++I +KI EL K TGKEV+ I+FTAREKMTGLESYDVKI ++
Sbjct: 1  MNIENLKTKAEADISEYITKKIIELKKKTGKEVTSIQFTAREKMTGLESYDVKINLI 57


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.315    0.137    0.334 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,722,634
Number of Sequences: 3077464
Number of extensions: 3446104
Number of successful extensions: 13200
Number of sequences better than 1.0e-01: 1
Number of HSP's better than  0.1 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13198
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 1,040,396,356
effective HSP length: 30
effective length of query: 27
effective length of database: 948,072,436
effective search space: 25597955772
effective search space used: 25597955772
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 87 (38.2 bits)