BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (157 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria... 328 3e-89 UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r... 130 2e-29 UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact... 116 3e-25 UniRef50_C8Q848 Transcription activator effector binding n=1 Tax... 113 1e-24 UniRef50_C5BHP3 Bacterial transcription activator, effector bind... 103 2e-21 UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax... 89 3e-17 UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax... 82 4e-15 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 68 9e-11 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 62 7e-09 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 61 1e-08 UniRef50_B8DR99 Transcription activator effector binding n=2 Tax... 61 1e-08 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 60 2e-08 UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria... 60 2e-08 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 60 3e-08 UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax... 60 3e-08 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 59 7e-08 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 57 2e-07 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 57 2e-07 UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax... 56 3e-07 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 56 4e-07 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 55 5e-07 UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S... 55 5e-07 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 55 8e-07 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 54 1e-06 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 54 2e-06 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 52 9e-06 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 51 1e-05 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 51 1e-05 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 50 2e-05 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 50 2e-05 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 50 2e-05 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 50 2e-05 UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 50 2e-05 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 49 3e-05 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 48 8e-05 UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta... 48 1e-04 UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen... 47 2e-04 UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga... 47 3e-04 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 46 3e-04 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 45 5e-04 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 45 6e-04 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 45 6e-04 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 45 7e-04 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 45 7e-04 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 45 9e-04 UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 44 0.001 UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=... 44 0.001 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 44 0.002 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 43 0.003 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 43 0.003 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 43 0.003 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 43 0.003 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 42 0.005 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 42 0.005 UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C... 42 0.005 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 42 0.007 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 41 0.012 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 41 0.013 UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax... 41 0.013 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 41 0.014 UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta... 39 0.045 UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=... 39 0.056 >UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI Length = 157 Score = 328 bits (841), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/157 (100%), Positives = 157/157 (100%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA Sbjct: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD Sbjct: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH Sbjct: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 >UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFH4_YERRU Length = 159 Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M + I ++ V +VGP+ +T+ +GF QL W I + W+A+Y+DNP+ TPA Sbjct: 1 MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSWHQHHQIPAQTWLALYWDNPETTPA 60 Query: 61 EKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR D +V F LP N SEGV+L I GG YAV RV+ D+AK W + + L Sbjct: 61 AELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQHLP 120 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 S Y C+EVYLN+G DGY+DI++Y +V+P Sbjct: 121 ASGYVPAEGACYEVYLNDGQADGYFDIDIYQSVEP 155 >UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae RepID=A1JN27_YERE8 Length = 157 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M ++I +++ + + +VGP+ +T+ KGF+QL I K+W+ +Y+DNP+ P Sbjct: 1 MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKDWLVLYWDNPETNPP 60 Query: 61 EKLRCDTVVTVPGYFTLP-ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR D ++V + LP E S+ + L I G YAV RV DD+AK W + +N L Sbjct: 61 AELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQHLP 120 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 S Y C+EVYLN+G DGY+DI++Y +V+ Sbjct: 121 QSGYRPTEGACYEVYLNDGRADGYFDIDIYQSVE 154 >UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b RepID=C8Q848_9ENTR Length = 153 Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 2/154 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M I + + G+ L GPW++TV +GF QL WV +++ + EW+A+YY NP P Sbjct: 1 MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWV-ARHALQGEWMAIYYGNPQVVPP 59 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++L +TV+TVP F L EG+ + GG Y V +DF W FF L Q Sbjct: 60 QELSVETVLTVPADFALAV-GEGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQQR 118 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 S +++ +PC+E YL++G++ G W + MY+ V+P Sbjct: 119 SDWQVDDRPCYEHYLSDGSQSGNWLLNMYIPVRP 152 >UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein; putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9 Length = 155 Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 4/140 (2%) Query: 16 FHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYF 75 + GP+ Q++ GFE+LM W +++ + +W+A+YYDNP E + LR D +T Sbjct: 16 LRVQGPFAQSLGPGFERLMAW-SARHGLRGQWMALYYDNPREVAPDALRADVALTT-ASV 73 Query: 76 TLPENSE--GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEV 133 TLP + E G+ + GG YA+A RV +DFA PW F+ L Y PCFE Sbjct: 74 TLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQALPACGYRPDGGPCFER 133 Query: 134 YLNNGAEDGYWDIEMYVAVQ 153 YL++G G W +E+ V V+ Sbjct: 134 YLSDGRGSGEWLLELGVPVR 153 >UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR9_DESPS Length = 155 Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDET 58 MN +IK+ + VA +G + E+T K+ F +L+ W + K + + +Y+DNP+ T Sbjct: 1 MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGTILGLYWDNPETT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P EK R D +TVP TL E + GV L I+GGQYAV + + F + W F+ + Sbjct: 61 PPEKCRTDACITVPD-GTLAEGTIGVQL--ISGGQYAVCHFEITAEGFQQAWKDAFSWFI 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQ 153 YE KPC+E++ NNG E DG W ++ + ++ Sbjct: 118 -GKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPLK 153 >UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium carotovorum subsp. carotovorum RepID=C6DEF0_PECCP Length = 154 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 4/154 (2%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M+ I+ E V +VGP+ + + +GF++++ W ++ + +A Y+D+P + A Sbjct: 1 MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSIDKSLAFYWDDPSKVEA 60 Query: 61 EKLRCDTVVTVPGY-FTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 ++LR D +T TLPE+ G+ I GG YAV V DFAK W F+ + + Sbjct: 61 DELRADVAITCKEMPSTLPEDV-GIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA-IN 118 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 Y C+E YL +G+ +G WDIE++ +V+ Sbjct: 119 AQGYCPAGDICYESYLCDGS-NGKWDIEIWQSVE 151 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 M+ I++ + VA VGP+ E T+ + +LM W ++ ++ + + V +D+P+ Sbjct: 170 MDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPGVKTLGVSWDDPEV 229 Query: 58 TPAEKLRCDT-VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 TP E R D +V PG E G E+ GG YAV V F + W + F Sbjct: 230 TPPEHCRYDACIVIAPGV----EVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFGQ 285 Query: 117 LLQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154 L S + +PCFE+Y + +G WD+ + + V+P Sbjct: 286 WLPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPVRP 325 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 5/146 (3%) Query: 9 EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTV 68 E T+A + GP+ Q ++ + L W +K + + +Y+DNP+ TP EK R D Sbjct: 158 EAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENAIFIYHDNPEITPDEKCRTDIC 217 Query: 69 VTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG-DDFAKPWYQFFNSLLQDSAYEMLP 127 VP + S V L GG YA V +++ + W + L+ D+ E Sbjct: 218 FRVPAD---TQASGRVELQVFPGGSYAYIRQTVKQMNEYGQAWSELMK-LVVDTGLESDE 273 Query: 128 KPCFEVYLNNGAEDGYWDIEMYVAVQ 153 +PCFE+Y + + D+ AV+ Sbjct: 274 RPCFELYHSFDPQTYVSDVSFCTAVK 299 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 MN E+ + VA +GP+ +T+ + +LM W + ++ V +DNP+ Sbjct: 276 MNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEV 335 Query: 58 TPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 TP E R D + + P L G+ + + GG YA + + + F + W + Sbjct: 336 TPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMYTQ 395 Query: 117 LLQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154 L S ++ +P +E+Y + +G WD+ + VAV+P Sbjct: 396 WLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICVAVRP 435 >UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio RepID=B8DR99_DESVM Length = 156 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M I++ + VAG ++GP+ ++ K ++ L W+ + + ++ + +D+P+ T Sbjct: 1 MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQVTSASTMFLGLCHDDPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E++R D +VTVP F E + VI+ I +YAVAV + W + L Sbjct: 61 PPERIRYDAMVTVPEDF---EPDDYVIVRVIRAREYAVAVHKGPYATLPWSWSALYWEWL 117 Query: 119 QDSAYEMLPKPCFEVYLNN 137 S L P E YLN+ Sbjct: 118 PVSGRTPLGAPRMEAYLND 136 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 20 GPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFTL 77 G + + QLM +V S ++ E + + +D+P+ T + +R D T+ L Sbjct: 145 GKYNDAAATAWGQLMPFVYSNRLIQPETIMIGISHDDPNITLVDNIRYDACATIVTEMEL 204 Query: 78 PENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137 PE G+ I GG+YA A+ + + ++ + L DS +E+ +PCFEVYLN Sbjct: 205 PE---GIDRKTILGGKYAKALHKGTYEKLSEAYSYLLLKWLPDSGFELRDQPCFEVYLNR 261 >UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM Length = 305 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 12 TVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTV 71 TVA + G + + + +L W + + E + +Y D+P+ TPA+K R D +TV Sbjct: 166 TVAYIRVTGEYGKNYEPATNRLYQWAGAHGLADGECLFIYLDSPEITPADKCRTDICLTV 225 Query: 72 PGYFTLPENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEMLPKP 129 P G+ + GG YA+ + R V D + W + ++++ + E+ +P Sbjct: 226 PDD---TATGNGIEKRHLPGGSYAL-IRRSVTDPAQYRVYWEEIMSAVIA-AQLEIDDRP 280 Query: 130 CFEVYLNNGAEDGYWDIEMYVAV 152 CFE Y + A G D+ VAV Sbjct: 281 CFEQYHHYDAATGKADVSFCVAV 303 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 17/143 (11%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNI-VPKE-WVAVYYDNPD 56 MN +K VA VGP+ E +V + +++L+ W ++++ P +++ +DNP Sbjct: 189 MNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWTPDRICLSIAHDNPK 248 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYA----VAVARVVGDDFAKPWY 111 T K R D + +P F ++G V +T+I GG+YA V AR +G W Sbjct: 249 VTEPAKCRLDAAIVIPQDF----KADGDVNVTDIAGGKYAAGAWVGDARAIG----SAWD 300 Query: 112 QFFNSLLQDSAYEMLPKPCFEVY 134 Q F L +S + +PCFE+Y Sbjct: 301 QLFGKWLPESGDQPDHRPCFELY 323 >UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC1_DESAD Length = 153 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 19 VGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFT 76 VGP+E+ V K +E+L W ++ + VY+D+P + PA +LR + +T+ Sbjct: 19 VGPYEE-VGKAWEKLCAWAGPNGHFNEKTRFYGVYHDDPGQVPAAELRSEACITLENEVE 77 Query: 77 LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136 +P G+ L +GG+YAV + W +F+ L S PC+E Y+N Sbjct: 78 VPA---GIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWLPQSGETHAEAPCYEQYMN 134 Query: 137 N 137 + Sbjct: 135 D 135 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM-WVDSKNIVPKEWVAVYYDNPDETP 59 M+ I K VA L+GP+ + + + + W+ S + + + YD+P TP Sbjct: 171 MDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTP 230 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTE-ITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A K R D V VP +F + G + T+ + GG+YAVA + + A W + Sbjct: 231 ASKCRYDACVEVPAHFV----ASGQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWM 286 Query: 119 QDSAYEMLPKPCFEVYLNNGAED 141 S + +PCFE++ A D Sbjct: 287 PSSGMQCDDRPCFEMFSAATAMD 309 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 4 EIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDETP 59 E+ + E RTVA G +++ + F LM W + + E + +++D+P T Sbjct: 143 EVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGLAHGAEMMCLFHDDPQVTD 202 Query: 60 AEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 AE +R + +T+ G P + EG V + GG+YA + D W F L Sbjct: 203 AELMRFSSCLTLRG----PADVEGEVGKMMVGGGRYACGHFVITHDQSQAAWEYMFGDWL 258 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 S YE PCF++Y + E G ++ + + V+P Sbjct: 259 PLSGYEPENIPCFQLYPSMTGEMGPHEVVICIPVRP 294 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDE 57 M+ ++K ++ V VG +E++ + + + QL+ + ++ I ++ A YDNP Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVL 229 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP K R + + +P + + I GQYAV + G + + F++ Sbjct: 230 TPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHW 289 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 L S YE P E YLN+ DG+ ++E+Y+ ++ Sbjct: 290 LPQSGYEPDHFPVIEHYLNDARVDGFVEMEIYIKLK 325 >UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus RepID=A7GQI7_BACCN Length = 152 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 6/148 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 MN +I+ K +A VGP+ + E+L W K + + + + +DNP+ T Sbjct: 1 MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHLDETAIVLGISHDNPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E R D + + + + V +E+ GG+YA+ + K W + F++LL Sbjct: 61 PPESCRYDACIVIEKNEPI---DDFVAESELPGGKYAIYEVEHTAEAIQKAWIEIFSNLL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI 146 +S YE+ +P FE Y+ ++ +I Sbjct: 118 -NSDYEIDTRPVFERYMKKMVDNHLCEI 144 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 8/141 (5%) Query: 20 GPWEQTVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPDETPAEKLRCDTVVTVPGYFT 76 G T K E+L + +N++ E +A+Y+DNP T +LR +T+P Sbjct: 167 GNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIV 226 Query: 77 LPENSE-GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYL 135 + EN G ++ I G+Y V + +++ W +N L + Y++ FEVYL Sbjct: 227 VKENDNLGNMI--IPSGKYLVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYL 284 Query: 136 NN--GAEDGYWDIEMYVAVQP 154 NN +++Y+ ++P Sbjct: 285 NNPHNHPQNRHLVDIYLPIEP 305 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 17/161 (10%) Query: 5 IKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIV--PKE-WVAVYYDNPDET 58 +K + TVA +G + E + FE+LM W + ++ P+ ++VY+D+P+ T Sbjct: 176 VKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDPNIT 235 Query: 59 PAEKLRCDTVVTVPGYFTLPENSE---GVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 +KLR ++VP N+E V I GG+YAV + ++ W ++ Sbjct: 236 DEQKLRTSVCISVP------PNTEVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWS 289 Query: 116 SLLQDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAVQP 154 + L +S Y+ + +E+YLN N +G +E+ V V+P Sbjct: 290 AWLPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPVRP 330 >UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4 Length = 286 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 3/145 (2%) Query: 9 EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTV 68 + RT+A + GP+ + QL W ++ + EW+ +Y+DNP+ TP + R D Sbjct: 144 DARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLAQGEWIFIYHDNPEVTPPAQCRTDIG 203 Query: 69 VTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128 VTVP + V + I G+YA + + P +Q + + Sbjct: 204 VTVPAGTV---GAGEVEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGDIVAAGLAFGDG 260 Query: 129 PCFEVYLNNGAEDGYWDIEMYVAVQ 153 PCFE+Y + + D+ +VQ Sbjct: 261 PCFELYHSVSNDPLRDDVSFCSSVQ 285 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M E+++ K V G + + +E LM + ++ E V + +D+P T Sbjct: 140 MKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMTGETLMVGIGHDDPAIT 199 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 EK+R D VT G PE G+ I GG+YAV + + + + F L Sbjct: 200 AEEKIRYDACVTFSGDVK-PEGEVGI--QTIAGGRYAVFLHKGAYTGLPEIYRNIFAGWL 256 Query: 119 QDSAYEMLPKPCFEVYLNN 137 S + +PCFEVYLN Sbjct: 257 ATSGCTLRDQPCFEVYLNR 275 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 4 EIKQEEKRTV-AGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 EIK+ +R++ A FH +E V F +L + S+ ++ K V +YYD+P P Sbjct: 134 EIKEVPERSLQALFHRGSYFEMGVV--FSKLAAMLSSRGVIRKCGPIVGIYYDDPSLVPL 191 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++LR VP F N+EG+ I GG+ AV + ++ + L Sbjct: 192 DELRSHVGAVVPQNFA---NTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVWLPT 248 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153 S E +PC+EV+LN+ D +E+++ +Q Sbjct: 249 SGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPLQ 283 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%) Query: 46 EWVAVYYDNPDETPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGD 104 E V +Y+DNP+ T +KLR VTV PG E S + L I G+Y A + Sbjct: 199 EMVCIYHDNPEITEDDKLRISLGVTVAPG----TETSGEINLLTIPAGKYVCARFELTSK 254 Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQP 154 D+A W L +S Y+ +P +E YL++ +ED G +E+ + V+P Sbjct: 255 DYAGAWNTLMG-WLPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRMGVKP 305 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 4/136 (2%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEK 62 I+ E V VGP+ Q + K F+ L W+ N++ + V VYYD+P + Sbjct: 162 IRHVEPIEVLSVDHVGPYMQ-IGKAFDALFGWLAKHNLLAGQMRMVGVYYDDPGVVAESE 220 Query: 63 LRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 LR V +P S V + + GG+YAV R D + + + L S Sbjct: 221 LRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLYGTWLVQS 280 Query: 122 AYEMLPKPCFEVYLNN 137 E P FE YLN+ Sbjct: 281 GREAADAPVFEEYLNS 296 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 19 VGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFT 76 VG + +T + + +L MW + P E ++ + D+P T E+ R D VTVP + Sbjct: 164 VGSYLETYQ-AWAKLGMWAAQHQLFPPEQSFIGISLDDPAVTEEEECRYDACVTVPDTLS 222 Query: 77 LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136 + + + GG YA D A + F + L DS Y+ + C E +N Sbjct: 223 RADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWLPDSEYDPDDRYCLEFSMN 282 Query: 137 NGAED--GYWDIEMYVAVQPK 155 + A+D G +++Y+ ++ + Sbjct: 283 DPAQDPQGKAKVDLYIPIKAR 303 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 20 GPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTL 77 GP+ + + K F L + ++ +P+ E +AVY D+P P E+LR + PG L Sbjct: 146 GPYIE-IGKAFGMLFGQLAARGALPERIEMIAVYLDDPTAVPLERLRSFAALAAPGGKDL 204 Query: 78 PENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137 E + EI GG YAV + D + + F + L S E +P E YLN+ Sbjct: 205 DPPVERI---EIAGGDYAVLRHKGPYADMSAAYNWLFGTWLPQSDREADDRPVVEKYLNS 261 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 6/148 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPK-EWVAVYYDNPDET 58 M+ I++ V GP+E+ +E+L D +K + P+ + + + YD+PD T Sbjct: 138 MDIRIEEFPPLDVVFIRHTGPYEE-CGIAWEKLCSHPDVAKELGPETQAIGICYDDPDIT 196 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A+K+R D VT P + PE E I GG+YAV + + F L Sbjct: 197 EADKIRMDVCVTAPPSLSPPEGMEK---QTIKGGEYAVLTHHGPYEGLHDCYRWLFGEWL 253 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI 146 S E P EVY+N+ E D+ Sbjct: 254 PSSGREANYAPSLEVYVNSPEEVAPQDL 281 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Query: 4 EIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPA 60 ++ + R +A +VG ++ + + F +++ + N++ V VY+D+PD T Sbjct: 134 RLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMTDCTACVGVYHDDPDVTAP 193 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 EK R D VTV F + + + + I G+ AV + D + + FF+ L D Sbjct: 194 EKQRADVGVTVDDQF---QPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWLPD 250 Query: 121 SAYEMLPKPCFEVYLNNGAE 140 S +E P +E+Y+N+ ++ Sbjct: 251 SGHEPGDFPAYEIYVNDASQ 270 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK--NIVPK--EWVAVYYDNPD 56 MN IK + R +A G E+ V + +L+ W S+ N+ PK E YD+P Sbjct: 128 MNIVIKNMQARRLAVVEHHGHPEK-VGESINKLINWAKSQAMNLKPKAGEAFGFAYDDPK 186 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T E + D +TVP L N VI + G+YAVA+ D+ Y + Sbjct: 187 TTEPEAFQFDLGITVPEQLKLEGN---VIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243 Query: 117 LLQDSAYEMLPKPCFEVYLN 136 L +S E+ PC Y N Sbjct: 244 WLPNSGEELGDLPCIFCYYN 263 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 11 RTVAGFHLVGP-WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVV 69 R V ++ +GP + + E+ + D+K ++ V YD+P T ++LR D V Sbjct: 192 RHVGRYNDIGPVFRRVAAIADERRLFGPDTKVMM------VAYDDPSVTDEQRLRSDAGV 245 Query: 70 TVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128 ++ T P G +I EI GG YAV V + D + S L +S YE + Sbjct: 246 SL----TDPTVDTGELIKGEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWLPNSGYEAADR 301 Query: 129 PCFEVYLNN 137 PC +VYLN Sbjct: 302 PCVDVYLNK 310 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 14/129 (10%) Query: 19 VGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEKLRCDTVVTVPGYFT 76 VG + Q + K F+ L W+ N++ + + VY+D+P + LR V +PG Sbjct: 135 VGSYMQ-IGKAFDALFGWLAKHNLLAGQMRMIGVYFDDPGVVEEQALRSKAGVLLPGP-V 192 Query: 77 LPENSEGVIL------TEITGGQYAVAVARVVG--DDFAKPWYQFFNSLLQDSAYEMLPK 128 + E + GV + T I GG+Y AV R VG D + + + L S E Sbjct: 193 MTEVAAGVGMGGAVSVTRIRGGEY--AVLRHVGPYSDMRAAYDWLYGTWLVQSGREAADA 250 Query: 129 PCFEVYLNN 137 P FE YLN+ Sbjct: 251 PVFEEYLNS 259 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 26 VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG 83 + + FE+L W + + + +AVY+ +PD TP +LR +T+ +P Sbjct: 172 IGQAFEKLSGWAGMRQLFDQTTRMMAVYFHDPDNTPEAELRSLAGITLTPE-KVPNLEAP 230 Query: 84 VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137 + +I G YAV + D + + FF + L +S YE+ +P FE YLN+ Sbjct: 231 LEHYDIQSGNYAVLRYKGPYADMHRAYKWFFGTWLAESGYEVADQPPFEEYLND 284 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 N ++ E R + GP+ + + + FE +S+N+ P+ + VY D P E P Sbjct: 127 NVTLRDEPARHLVTVPHRGPYAE-IGRAFEHFSALANSRNLWPQLGPVLGVYLDAPGEMP 185 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 ++LR G T EG+ + GG+ AV + A + F L Sbjct: 186 EDQLRSYAGAEYRGDGT----PEGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGGWLP 241 Query: 120 DSAYEMLPKPCFEVYLNN 137 S +PC+E+YLN+ Sbjct: 242 QSGETPADQPCYEIYLND 259 >UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK9_DESVV Length = 156 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 7/155 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 MN I+ VA H GP+ + +++L W+ ++ E +V V D P Sbjct: 1 MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTFETLFVGVLGDTPCGL 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +E D V+VP + E V + I GG A V + A+ W + L Sbjct: 61 ASESTGYDAGVSVPQHI---EADGYVSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 S PC EVYLN A D D E+ + Sbjct: 118 PASGRITREAPCVEVYLN--APDSTPDHELLTRLH 150 >UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVG7_9BACL Length = 153 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 M +++++ + A VGP+ + E++ W +N++ + + +DNP+ T Sbjct: 1 MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLNHSAILLGIPWDNPETT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P + R D + + P + + V + EI+GG Y V + + W + + L Sbjct: 61 PPKNCRYDACLVISQ--DEPLDDDTVHIGEISGGDYLVCTIKHTAQAMQQAWAELMPT-L 117 Query: 119 QDSAYEMLPKPCFEVY 134 Q Y++ +P E Y Sbjct: 118 QAKGYQIDDRPILERY 133 >UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2BPM6_9GAMM Length = 292 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59 N E+ + E + G+ G + + + F++L M+ SK ++ E + +YY++P Sbjct: 139 NVEMMEFETTNLLGYEHKGDYME-IGNAFDKLFMFAGSKRLIGPETRSIGIYYNDPGSVD 197 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A +LR ++V E + L +I G+ A + + + KP+ FF L Sbjct: 198 ASELRSHACISVEAPRDAEEEQDPENL-QIPAGRCATLLFKGPYAELEKPYNWFFGQWLP 256 Query: 120 DSAYEMLPKPCFEVYLNN 137 S E P FE YLN+ Sbjct: 257 QSGLEAADFPPFEEYLND 274 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 10/128 (7%) Query: 26 VKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPAEKLRCDTVVT----VPGYFTLPE 79 V FE++ WV ++ + + ++YD+PD TP +LR P +P Sbjct: 162 VGDAFERIGAWVGQHGLIGPGAKMIGIFYDDPDTTPEAQLRAKACFMPADGAPDIAPVPP 221 Query: 80 NSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGA 139 V I GG+YAV + D + + L+ S E P FE+YLN Sbjct: 222 ----VERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLRHSGREAADAPPFELYLNTPM 277 Query: 140 EDGYWDIE 147 + D+ Sbjct: 278 DTAPADLR 285 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAE 61 EI+ ++ V VGP+ + V K +E+L W K + + E++ + YD+PD TP Sbjct: 147 EIRTRDEIQVVFIRHVGPYPK-VTKAWEKLCGWGFGKGLFSEKTEFLGLSYDDPDITPEG 205 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 K+R D TV P + L I GG+YAV + + + + L S Sbjct: 206 KIRYDACFTVNEEVETPPE---MGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLPSS 262 Query: 122 AYEMLPK-PCFEVYLN 136 Y++ P FE Y+ Sbjct: 263 GYQLKNTIPSFEKYIK 278 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 5/108 (4%) Query: 36 WVDSKNIVP---KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGG 92 W S + P + Y++P AE RCD V + +N GVI + + GG Sbjct: 166 WRKSSGLSPITKSRTFNIIYEDPAVVVAEDFRCDLAAEVMK--EVDDNEYGVINSTLAGG 223 Query: 93 QYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAE 140 +YAV D ++ Y + L DS E+ PCF Y N+ E Sbjct: 224 RYAVVRHFGPYDSISRCLYFLYGEWLPDSGEELGDAPCFFQYHNHFPE 271 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 3 YEIKQEE--KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDET 58 Y +K E+ +R +A VG + V K +E++ +++ + V +YYD+P Sbjct: 115 YGVKVEDAPERRLAAMAHVGAY-NGVSKSYEKVAAVFTIRDLWKHARGMVGIYYDDPSTV 173 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P +LR V + +P+ E V+ I G + AV V + + + + L Sbjct: 174 PEAELRSYAAVELADDVVVPDPLEEVL---IRGDESAVLVMKGAYTGLQEAYEWLYGQWL 230 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 S +P +E+YLN+ + D+ ++YV +QPK Sbjct: 231 PQSGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPLQPK 269 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNP 55 + EI++E+ + GP+++ F++L W D + ++ W +Y+D Sbjct: 137 LKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLISSTSRWFVIYHDFG 196 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 +ET ++LR ++V + S + + + GQYAV V ++ K WY + Sbjct: 197 NETDEDQLRLSVCMSVDRNLAV---SGDIGILNLHEGQYAVGSFMVEPSEYDKAWYYMYG 253 Query: 116 SLLQDSAYEMLPKPCFEVY 134 L S ++ + E Y Sbjct: 254 KWLPTSGHKPDDRFSLEHY 272 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 8/132 (6%) Query: 8 EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPAEKLRC 65 +KR A H E +V ++++ + + N P + VYYDNP+ TP E LR Sbjct: 129 SDKRLAALSHRGDYAEGSV--AYQKVATIISTGNHWPQTRGMAGVYYDNPEVTPTEDLRS 186 Query: 66 DTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM 125 V G +P+ E V ++TGG+YAV + A+ + + L S + Sbjct: 187 HAGVLWEG-GAIPDGLEEV---QLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLSSSQESL 242 Query: 126 LPKPCFEVYLNN 137 P FE YLN+ Sbjct: 243 RDAPSFEHYLND 254 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 6/139 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDET 58 M + E+ V GP++ + L W + +V + +A+ +D+PD T Sbjct: 133 MEASVVNLEEMNVVFVRHTGPYKD-CNHAWSTLCGWAGPRGLVNADARILALCHDDPDVT 191 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P +K+R D +TV G E + + I GG+YA + + D K + Q Sbjct: 192 PEDKIRYDACITVAGQ---TEVQAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQWA 248 Query: 119 QDSAYEMLPKPCFEVYLNN 137 + E E+YLN Sbjct: 249 PQNGCEADAGASIEIYLNT 267 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 48 VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107 + +Y+D+P TPAEKLR D + +P P+ G + G+YA+ + + D+ Sbjct: 181 LCIYHDDPKVTPAEKLRTDVCMVMPVQVA-PKGDVG--FKTLPAGRYAIFLYKGTYDNLQ 237 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 + + L + + +P E YLNN E ++ E+Y+ V+ Sbjct: 238 AVYDTIYGKCLPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPVE 285 >UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes RepID=Q81BV9_BACCR Length = 296 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKN---IVPKEWVAVYYDNP 55 N EI + VA +G +E+ K E+L + +N + + +Y+D+ Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T LR VT+ T+ N G+++ I G+YAV + D++ W + Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGIMV--IPSGKYAVGHFEICQDEYKGAWDFIYG 254 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQP 154 L +S Y+ FEVY N+ + +++YV ++P Sbjct: 255 EWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEP 295 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 9/112 (8%) Query: 30 FEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVIL 86 F++LM W ++ + +Y+D+ T +E++R + + P +++G++ Sbjct: 182 FQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITASEQVRMSACIVLKE----PVSTDGLVG 237 Query: 87 T-EITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137 T + G+ VA + D+F K W + F L + Y+ + CFE+Y N+ Sbjct: 238 TMTMPSGKCVVARMELAMDEFGKAWTELF-VWLNRNGYKTTERNCFEIYGND 288 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 6/139 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVY---YDNPDE 57 MN I + +A +G ++ ++ Q + W + P Y + +PD+ Sbjct: 129 MNVNIVERPAEKIAYLSHLGSPDKVLETA-AQFIAWRKETGLSPVTKSKTYGIPFADPDQ 187 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TPA++ R D ++ +PENS GV EI G+YA D Y F + Sbjct: 188 TPADEFRFDIAGSIEK--AVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRNW 245 Query: 118 LQDSAYEMLPKPCFEVYLN 136 L + E P F Y N Sbjct: 246 LPEQPEEAGDYPVFFHYHN 264 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 16/144 (11%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-------VKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 ++ IK VA VGP++Q K + D+K ++ + +D Sbjct: 137 LDVVIKTLPLMKVACVRHVGPYDQCEPAWASLCAKAGPLGLFGPDTK------FIGIGHD 190 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 +P TP EK+R D +TVP F + + + I G YA AV + + A + Sbjct: 191 DPQITPPEKIRYDACMTVPDSFA---GTPDLPVASIGGRDYASAVVKGPYTNLAPAYAWL 247 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN 137 D E +P E+YLN+ Sbjct: 248 CGVWGPDCGREFAMEPSMEIYLND 271 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 10/133 (7%) Query: 29 GFEQLMMWVDSKNIVPKEW---VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVI 85 E+L + +N++ ++ +AVY+ +PD + EK R +++ T+ S+ + Sbjct: 171 SMEKLFTFAIKQNLIDEKKSKPLAVYHSHPDFSDEEKQRTSICLSIKEPITVDGKSD-IG 229 Query: 86 LTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPC--FEVYLNNGAE--D 141 I+ G YAVA ++ ++ W + L S Y LP+ FEVY+NN E + Sbjct: 230 YMSISSGTYAVAHFEILQSEYGDAWDFLYGEWLPRSGY--LPRNYFPFEVYVNNPNEHSE 287 Query: 142 GYWDIEMYVAVQP 154 +++Y+ ++P Sbjct: 288 NKHIVDIYLPIEP 300 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 10/129 (7%) Query: 13 VAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAEKLRCDTVV 69 +AG +G +++ F++LM W K ++ + + +Y+DNP+ T KLR T + Sbjct: 159 LAGVMHIGEFDK-AGNMFQRLMEWGAKKRVLATSDFKAITIYHDNPNVTQTSKLRFSTCI 217 Query: 70 TVPGYFTLPENSEGVIL-TEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128 T+ + N++G I + G YAV + D+ W ++++ YE Sbjct: 218 TI----SEDINADGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMCIWVIEN-GYEFRDG 272 Query: 129 PCFEVYLNN 137 FE+Y N+ Sbjct: 273 DYFEMYHND 281 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 6/136 (4%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPAE 61 E+K VA GP+ Q + ++ L W + +V +++ + YD+P+ T + Sbjct: 157 EVKVLAPVRVAFVRHTGPYAQ-CEAAWKTLCDWAFPQGLVMAQTQFMGICYDDPEVTAPD 215 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 K+R D ++VP + V + E+ GG+Y AV + + S Sbjct: 216 KIRYDACISVPDNV---QAEHPVAIREVEGGEYVCAVWKGPYTGLTNAYAALCGQWGGRS 272 Query: 122 AYEMLPKPCFEVYLNN 137 E P EVYLN+ Sbjct: 273 GREFRAAPSVEVYLND 288 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 10/149 (6%) Query: 13 VAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVT 70 VA G +E + F +L+ W K I + + V +D P TP E LR D + Sbjct: 159 VAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRNDCFLLGVGHDAPTITPKELLRFDCCIE 218 Query: 71 VPGYFTLPENSEGVI-LTEITGGQYA-VAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128 V P +SEG I ++ GGQ+A V G + + + + + + E + Sbjct: 219 VDQ----PFHSEGKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQHNKNIEFVGL 274 Query: 129 PCFEVYLNNGAEDGYW--DIEMYVAVQPK 155 P E+Y Y ++YV ++ K Sbjct: 275 PVVEIYRTTTINPSYKLNQTDIYVPIRVK 303 >UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales RepID=A8EWB5_ARCB4 Length = 292 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 19/142 (13%) Query: 22 WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGY------F 75 +++++KK +++L W+ + +I + +A+++DNP TP E + +V + F Sbjct: 158 YDKSIKKTWQKLQTWIYTNDIKEYKQMALHHDNPIITPLEDCQYIAIVVLEDKEKASLDF 217 Query: 76 TLPE--NSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEV 133 LP +GV G+Y + + W +++ L +S YE P P + + Sbjct: 218 LLPSLIIPKGVYAKFSLSGKYGDVIKLI-------QW--VYHTWLIESGYETTPNPSYTI 268 Query: 134 YLNNG--AEDGYWDIEMYVAVQ 153 Y N ++DG + ++ Y+ ++ Sbjct: 269 YHKNHFLSDDGEFILDYYLPIR 290 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Query: 46 EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGD 104 +V++ DNP TP E+ R V V G NSEG ++L EI GG YAV + Sbjct: 270 RFVSISQDNPWVTPMEQRRFYIGVLVEG----RANSEGKLLLREIPGGMYAVFRYKGSYS 325 Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136 D + + +N S Y FEVYLN Sbjct: 326 DLPEFYKTIYNQWFPYSMYHQKRPLTFEVYLN 357 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Query: 48 VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107 + + YD+P T A+K+R D + + P GV E+ GG++AV + + FA Sbjct: 183 IGLPYDDPKITEADKIRYDACLIIHKD-AKPNGDVGV--KELKGGKFAVFLYQGSYKHFA 239 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNG 138 + FN+ L +S +E+ P E Y+++ Sbjct: 240 DVYDHMFNAWLINSGHELRDAPSREKYISDA 270 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 24/138 (17%) Query: 28 KGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG-V 84 K +EQL V S+ + K E + V YD+P T A R + + + P G V Sbjct: 158 KAYEQLWGVVKSQKLFTKGIESICVSYDDPKITEASLQRSEVSLAIHK----PAKPSGEV 213 Query: 85 ILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL-------LQDSAYEMLPKPCFEVYLNN 137 + GG+YAV F + Y +S+ + DS YE+ +P FE YLN+ Sbjct: 214 SCKTLAGGKYAVF--------FYQGSYTQLSSVYDAAMRWVVDSEYEVRDEPMFEKYLND 265 Query: 138 GAE--DGYWDIEMYVAVQ 153 +G E+Y+ VQ Sbjct: 266 CRRTPEGKLKTEIYIPVQ 283 >UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae RepID=YGIV_ECO57 Length = 160 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%) Query: 32 QLMMWVDSKNIVP---KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88 + +MW + P + V +D+P T E R D +V +P+N GV E Sbjct: 36 KFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSE--PIPDNRYGVSNGE 93 Query: 89 ITGGQYAVAVARVVG--DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136 +TGG+Y AVAR VG DD + + L S +M P Y N Sbjct: 94 LTGGRY--AVARHVGELDDISHTIWGIIRHWLPASGEKMRKAPILFHYTN 141 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 5/108 (4%) Query: 32 QLMMWVDSKNIVP---KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88 + + W + + P + + +D+P TP E R D TV G + EN+ GVI E Sbjct: 165 RFIAWRKTSGLSPVATSDTWGIAWDDPQTTPQEAFRFDICGTVAG--PVGENAFGVINGE 222 Query: 89 ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136 I GG+ AV D A + + L S + P + YLN Sbjct: 223 IPGGRCAVVRHHGSLDTLANSVWFLYRDWLPASGETLRDFPVYFRYLN 270 >UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RP02_RHORT Length = 160 Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 14 AGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEKLRCDTVVTV 71 A +GP+ + + F ++ W S+ ++ E + + YD+P TPAE LR D VT+ Sbjct: 15 ASLRHIGPYGE-AGETFRKITDWAVSEGVMTPETQILGLSYDDPKTTPAEILRYDACVTL 73 Query: 72 PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCF 131 LP G+ L + + + + + + + + + +L + + Sbjct: 74 KTPVALP---PGMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPTLVPIATGAI 130 Query: 132 EVYLNNGAEDGYWDI--EMYVAV 152 E+Y+N+ A D+ E+ VAV Sbjct: 131 EIYVNDPATTAPADLITELGVAV 153 >UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus RepID=B9J2X1_BACCQ Length = 159 Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 32 QLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEI 89 +L+ W + P E ++ + DNP+ + R D VT+P F E E V + Sbjct: 31 KLLNWSIENKLYPPEQSFIGISLDNPELVASHMCRHDACVTIPKNFE-KEQHEDVQFKSV 89 Query: 90 TGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM-LPKPCFEVYLNNGAED--GYWDI 146 GG YA+ ++ + + L +S Y + E +NN AED G + Sbjct: 90 DGGLYALYEFYDKPHKLSEVYRYMYAVWLPNSEYSADYDRDNLEFCMNNVAEDLEGKLKV 149 Query: 147 EMYVAVQ 153 +++V+++ Sbjct: 150 DLFVSIK 156 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria... 210 1e-53 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 205 3e-52 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 196 2e-49 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 193 1e-48 UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r... 193 2e-48 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 186 3e-46 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 185 4e-46 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 180 2e-44 UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax... 178 6e-44 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 177 8e-44 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 177 1e-43 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 177 1e-43 UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact... 176 2e-43 UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=... 175 3e-43 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 175 3e-43 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 173 1e-42 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 173 2e-42 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 172 5e-42 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 171 6e-42 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 170 2e-41 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 169 3e-41 UniRef50_C8Q848 Transcription activator effector binding n=1 Tax... 169 3e-41 UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 167 1e-40 UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax... 166 2e-40 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 166 2e-40 UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax... 165 6e-40 UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga... 164 7e-40 UniRef50_B8DR99 Transcription activator effector binding n=2 Tax... 164 7e-40 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 164 8e-40 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 162 3e-39 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 162 4e-39 UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S... 161 4e-39 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 161 6e-39 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 160 1e-38 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 160 2e-38 UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax... 159 3e-38 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 158 5e-38 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 158 6e-38 UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria... 158 7e-38 UniRef50_C5BHP3 Bacterial transcription activator, effector bind... 156 1e-37 UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 156 2e-37 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 155 3e-37 UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta... 152 3e-36 UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen... 150 1e-35 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 146 2e-34 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 142 3e-33 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 139 3e-32 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 133 2e-30 Sequences not found previously or not previously below threshold: UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 153 2e-36 UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D... 152 4e-36 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 149 2e-35 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 149 3e-35 UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R... 146 2e-34 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 142 3e-33 UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p... 138 4e-32 UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S... 138 8e-32 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 135 6e-31 UniRef50_A9D6E7 Putative AraC family transcriptional regulator n... 134 9e-31 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 131 9e-30 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 128 6e-29 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 128 8e-29 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 127 9e-29 UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A... 126 2e-28 UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=... 126 2e-28 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 124 8e-28 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 124 1e-27 UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=R... 122 3e-27 UniRef50_A6LWY8 Transcription activator, effector binding n=5 Ta... 121 5e-27 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 121 6e-27 UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact... 121 9e-27 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 121 1e-26 UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu... 120 2e-26 UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re... 119 3e-26 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 119 3e-26 UniRef50_D1B3I6 Transcription activator effector binding protein... 118 8e-26 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 117 1e-25 UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic... 117 1e-25 UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero... 115 3e-25 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 115 3e-25 UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C... 112 3e-24 UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseo... 111 9e-24 UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n... 110 1e-23 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 109 3e-23 UniRef50_O34775 SPBc2 prophage-derived putative transcriptional ... 109 3e-23 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 108 8e-23 UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca... 108 9e-23 UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta... 107 2e-22 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 106 2e-22 UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n... 104 9e-22 UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact... 104 1e-21 UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl... 103 2e-21 UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax... 103 2e-21 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 102 5e-21 UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=M... 100 1e-20 UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C... 99 4e-20 UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A... 99 5e-20 UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ... 98 6e-20 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 98 7e-20 UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C... 98 7e-20 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 98 1e-19 UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T... 97 1e-19 UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re... 97 2e-19 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 97 2e-19 UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales ... 96 3e-19 UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Mag... 96 4e-19 UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax... 94 2e-18 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 92 7e-18 UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n... 91 1e-17 UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI... 91 1e-17 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 90 2e-17 UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ... 89 3e-17 UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WA... 88 1e-16 UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax... 88 1e-16 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 86 4e-16 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 85 5e-16 UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X... 85 8e-16 UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia... 84 1e-15 UniRef50_Q9K5S9 BH4009 protein n=1 Tax=Bacillus halodurans RepID... 80 2e-14 UniRef50_A0M275 Effector binding transcriptional activator prote... 80 3e-14 UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus p... 80 3e-14 UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methano... 79 4e-14 UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methano... 79 5e-14 UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri... 78 7e-14 UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=H... 78 1e-13 UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta... 77 2e-13 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 77 2e-13 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 76 3e-13 UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavoba... 75 7e-13 UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepI... 73 3e-12 UniRef50_A3XLX8 Probable transcription regulator, MerR family pr... 73 3e-12 UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n... 73 3e-12 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 73 3e-12 UniRef50_Q6MJL0 Putative uncharacterized protein n=1 Tax=Bdellov... 73 3e-12 UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B... 73 4e-12 UniRef50_A5FHW5 Transcription activator, effector binding n=2 Ta... 73 4e-12 UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bac... 72 5e-12 UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseud... 71 7e-12 UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=M... 71 7e-12 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 71 8e-12 UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch... 71 1e-11 UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax... 70 2e-11 UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta... 70 2e-11 UniRef50_A5V1E8 Transcription activator, effector binding n=1 Ta... 70 2e-11 UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax... 70 2e-11 UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhod... 69 4e-11 UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax... 69 4e-11 UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=r... 69 5e-11 UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A... 68 6e-11 UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi... 68 7e-11 UniRef50_A2FCJ7 Putative uncharacterized protein n=1 Tax=Trichom... 68 8e-11 UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseud... 68 8e-11 UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ... 68 8e-11 UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=S... 68 1e-10 UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokd... 67 2e-10 UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=... 67 2e-10 UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla ma... 67 2e-10 UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B... 66 3e-10 UniRef50_B8FW41 Transcription activator effector binding n=6 Tax... 66 3e-10 UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp... 66 4e-10 UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=... 66 4e-10 UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=B... 66 5e-10 UniRef50_Q28T08 Transcription activator effector binding n=1 Tax... 66 5e-10 UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta... 65 5e-10 UniRef50_C5DA82 Transcription activator effector binding n=1 Tax... 65 6e-10 UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=u... 65 6e-10 UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A... 65 7e-10 UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytopha... 65 7e-10 UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC... 65 7e-10 UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax... 65 8e-10 UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax... 65 8e-10 UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=... 65 9e-10 UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=C... 65 1e-09 UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family pr... 64 1e-09 UniRef50_UPI0000587148 PREDICTED: hypothetical protein n=1 Tax=S... 64 2e-09 UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=... 63 2e-09 UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseu... 63 2e-09 UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1... 63 2e-09 UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=B... 63 3e-09 UniRef50_C3L2H2 Bacterial transcription activator, effector bind... 63 3e-09 UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium Re... 63 3e-09 UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavoba... 63 4e-09 UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ... 63 4e-09 UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=... 62 5e-09 UniRef50_D1AKN1 Transcription activator effector binding protein... 62 5e-09 UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 T... 62 6e-09 UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C... 62 6e-09 UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F... 62 7e-09 UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1... 62 7e-09 UniRef50_B8GJM5 Transcription activator effector binding n=1 Tax... 61 7e-09 UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales ... 61 8e-09 UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B... 61 1e-08 UniRef50_A3I8G8 Transcriptional regulator, MerR family protein n... 61 1e-08 UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=M... 61 1e-08 UniRef50_B5JDT8 Bacterial transcription activator, effector bind... 61 1e-08 UniRef50_A6UD97 Transcription activator effector binding n=14 Ta... 61 1e-08 UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croce... 61 1e-08 UniRef50_A6LWV9 Transcription activator, effector binding n=1 Ta... 60 2e-08 UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulato... 60 2e-08 UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=S... 60 3e-08 UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrop... 60 3e-08 UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=C... 59 4e-08 UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax... 59 4e-08 UniRef50_B8I6Y6 Transcriptional regulator, AraC family n=2 Tax=C... 59 4e-08 UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID... 59 4e-08 UniRef50_D0NCH1 Putative uncharacterized protein n=1 Tax=Phytoph... 59 5e-08 UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepI... 59 5e-08 UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=... 59 5e-08 UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T... 59 5e-08 UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=C... 59 6e-08 UniRef50_C5RJ11 Transcriptional regulator, MerR family n=1 Tax=C... 58 6e-08 UniRef50_D2R723 Transcription activator effector binding protein... 58 8e-08 UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 T... 58 9e-08 UniRef50_B0MJ37 Putative uncharacterized protein n=1 Tax=Anaeros... 58 1e-07 UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T... 58 1e-07 UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI... 58 1e-07 UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S... 57 2e-07 UniRef50_C3JZ42 Putative AraC family transcriptional regulator n... 57 2e-07 UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 T... 57 2e-07 UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aerom... 57 2e-07 UniRef50_C2AQJ3 Predicted transcriptional regulator n=1 Tax=Tsuk... 57 2e-07 UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staph... 57 2e-07 UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A... 57 2e-07 UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac... 57 2e-07 UniRef50_C0EVN7 Putative uncharacterized protein n=1 Tax=Eubacte... 57 2e-07 UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ... 57 2e-07 UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S... 56 3e-07 UniRef50_Q1IWD1 Transcriptional regulator, MerR family n=1 Tax=D... 56 3e-07 UniRef50_B8FZA0 Transcriptional regulator, MerR family n=2 Tax=D... 56 3e-07 UniRef50_B9YCK8 Putative uncharacterized protein n=1 Tax=Holdema... 56 3e-07 UniRef50_A2DA81 Putative uncharacterized protein n=1 Tax=Trichom... 56 4e-07 UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID... 56 4e-07 UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C... 56 5e-07 UniRef50_Q054R8 Putative uncharacterized protein n=3 Tax=Leptosp... 55 6e-07 UniRef50_D1AJG5 Transcription activator effector binding protein... 55 6e-07 UniRef50_B2TR03 Transcriptional regulator, AraC family n=5 Tax=C... 55 8e-07 UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio ... 55 9e-07 UniRef50_A6CI29 Bacterial transcription activator family protein... 55 1e-06 UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax... 55 1e-06 UniRef50_Q0W824 Putative transcription regulator (MerR family) n... 54 1e-06 UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=... 54 1e-06 UniRef50_B9QWG5 Bacterial transcription activator, effector bind... 54 1e-06 UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ... 54 1e-06 UniRef50_A9KIF5 Transcriptional regulator, MerR family n=1 Tax=C... 54 2e-06 UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19... 54 2e-06 UniRef50_B5JGT3 Bacterial transcription activator, effector bind... 53 2e-06 UniRef50_Q3DSM6 Bacterial transcription activator, effector bind... 53 3e-06 UniRef50_A8UHS9 Putative uncharacterized protein n=1 Tax=Flavoba... 53 3e-06 UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ... 53 3e-06 UniRef50_Q12WP7 AraC_E_bind-containing bacterial regulation effe... 53 3e-06 UniRef50_Q188Y0 Putative uncharacterized protein n=6 Tax=Clostri... 53 3e-06 >UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI Length = 157 Score = 210 bits (535), Expect = 1e-53, Method: Composition-based stats. Identities = 157/157 (100%), Positives = 157/157 (100%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA Sbjct: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD Sbjct: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH Sbjct: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 205 bits (522), Expect = 3e-52, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 M+ I++ + VA VGP+ + T+ + +LM W ++ ++ + + V +D+P+ Sbjct: 170 MDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPGVKTLGVSWDDPEV 229 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E R D + + E G E+ GG YAV V F + W + F Sbjct: 230 TPPEHCRYDACIVIAPGV---EVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFGQW 286 Query: 118 LQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154 L S + +PCFE+Y + +G WD+ + + V+P Sbjct: 287 LPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPVRP 325 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 196 bits (499), Expect = 2e-49, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 11/160 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPD 56 +K + TVA +G + E + FE+LM W + ++ ++VY+D+P+ Sbjct: 174 VTVKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDPN 233 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T +KLR ++VP E V I GG+YAV + ++ W +++ Sbjct: 234 ITDEQKLRTSVCISVPPN---TEVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWSA 290 Query: 117 LLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQP 154 L +S Y+ + +E+YLNN +G +E+ V V+P Sbjct: 291 WLPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPVRP 330 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 193 bits (491), Expect = 1e-48, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 MN E+ + VA +GP+ +T+ + +LM W + ++ V +DNP+ Sbjct: 276 MNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEV 335 Query: 58 TPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 TP E R D + + P L G+ + + GG YA + + + F + W + Sbjct: 336 TPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMYTQ 395 Query: 117 LLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQP 154 L S ++ +P +E+Y + +G WD+ + VAV+P Sbjct: 396 WLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICVAVRP 435 >UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFH4_YERRU Length = 159 Score = 193 bits (491), Expect = 2e-48, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M + I ++ V +VGP+ +T+ +GF QL W I + W+A+Y+DNP+ TPA Sbjct: 1 MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSWHQHHQIPAQTWLALYWDNPETTPA 60 Query: 61 EKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR D +V F LP N SEGV+L I GG YAV RV+ D+AK W + + L Sbjct: 61 AELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQHLP 120 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 S Y C+EVYLN+G DGY+DI++Y +V+P Sbjct: 121 ASGYVPAEGACYEVYLNDGQADGYFDIDIYQSVEP 155 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 186 bits (472), Expect = 3e-46, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPKEWVAVYYDNPDETP 59 M+ I K VA L+GP+ + + + + W+ S + + + YD+P TP Sbjct: 171 MDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTP 230 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A K R D V VP +F S V + GG+YAVA + + A W + Sbjct: 231 ASKCRYDACVEVPAHFV---ASGQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWMP 287 Query: 120 DSAYEMLPKPCFEVYL---NNGAEDGYWDIEMYVAVQP 154 S + +PCFE++ A+ G + ++ + V+ Sbjct: 288 SSGMQCDDRPCFEMFSAATAMDADTGEFCCDICIPVRA 325 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 185 bits (470), Expect = 4e-46, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 5/159 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M I + A VG + +T + + +L MW + P E ++ + D+P T Sbjct: 146 MQATIVELPLMEAAYVRHVGSYLETY-QAWAKLGMWAAQHQLFPPEQSFIGISLDDPAVT 204 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 E+ R D VTVP + + + + GG YA D A + F + L Sbjct: 205 EEEECRYDACVTVPDTLSRADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWL 264 Query: 119 QDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQPK 155 DS Y+ + C E +N+ A+D G +++Y+ ++ + Sbjct: 265 PDSEYDPDDRYCLEFSMNDPAQDPQGKAKVDLYIPIKAR 303 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 180 bits (456), Expect = 2e-44, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 7/157 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDE 57 E+ + E RTVA G +++ + F LM W + + E + +++D+P Sbjct: 141 KVEVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGLAHGAEMMCLFHDDPQV 200 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T AE +R + +T+ G + V + GG+YA + D W F Sbjct: 201 TDAELMRFSSCLTLRGPADVE---GEVGKMMVGGGRYACGHFVITHDQSQAAWEYMFGDW 257 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 L S YE PCF++Y + E G ++ + + V+P Sbjct: 258 LPLSGYEPENIPCFQLYPSMTGEMGPHEVVICIPVRP 294 >UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR9_DESPS Length = 155 Score = 178 bits (451), Expect = 6e-44, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDET 58 MN +IK+ + VA +G + E+T K+ F +L+ W + K + + +Y+DNP+ T Sbjct: 1 MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGTILGLYWDNPETT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P EK R D +TVP + + I+GGQYAV + + F + W F+ Sbjct: 61 PPEKCRTDACITVPDG---TLAEGTIGVQLISGGQYAVCHFEITAEGFQQAWKDAFS-WF 116 Query: 119 QDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQ 153 YE KPC+E++ NNG E DG W ++ + ++ Sbjct: 117 IGKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPLK 153 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 177 bits (450), Expect = 8e-44, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDET 58 M + E+ V GP++ + L W + +V +A+ +D+PD T Sbjct: 133 MEASVVNLEEMNVVFVRHTGPYKD-CNHAWSTLCGWAGPRGLVNADARILALCHDDPDVT 191 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P +K+R D +TV G E + + I GG+YA + + D K + Q Sbjct: 192 PEDKIRYDACITVAGQ---TEVQAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQWA 248 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 + E E+YLN + ++ E+YV ++ Sbjct: 249 PQNGCEADAGASIEIYLNTPDKTAPEELRTEVYVPLK 285 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 177 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPK-EWVAVYYDNPDET 58 M+ I++ V GP+E+ +E+L D +K + P+ + + + YD+PD T Sbjct: 138 MDIRIEEFPPLDVVFIRHTGPYEE-CGIAWEKLCSHPDVAKELGPETQAIGICYDDPDIT 196 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A+K+R D VT P + PE G+ I GG+YAV + + F L Sbjct: 197 EADKIRMDVCVTAPPSLSPPE---GMEKQTIKGGEYAVLTHHGPYEGLHDCYRWLFGEWL 253 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S E P EVY+N+ E D+ E+ V ++ Sbjct: 254 PSSGREANYAPSLEVYVNSPEEVAPQDLITEIRVPLK 290 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 177 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M E+++ K V G + + +E LM + ++ E V + +D+P T Sbjct: 140 MKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMTGETLMVGIGHDDPAIT 199 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 EK+R D VT G V + I GG+YAV + + + + F L Sbjct: 200 AEEKIRYDACVTFSGDVK---PEGEVGIQTIAGGRYAVFLHKGAYTGLPEIYRNIFAGWL 256 Query: 119 QDSAYEMLPKPCFEVYLN-NGAEDGYWDI--EMYVAV 152 S + +PCFEVYLN + ++ E++V V Sbjct: 257 ATSGCTLRDQPCFEVYLNRDPRRTKPENLRTEIWVPV 293 >UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae RepID=A1JN27_YERE8 Length = 157 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M ++I +++ + + +VGP+ +T+ KGF+QL I K+W+ +Y+DNP+ P Sbjct: 1 MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKDWLVLYWDNPETNPP 60 Query: 61 EKLRCDTVVTVPGYFTLP-ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR D ++V + LP E S+ + L I G YAV RV DD+AK W + +N L Sbjct: 61 AELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQHLP 120 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 S Y C+EVYLN+G DGY+DI++Y +V+ Sbjct: 121 QSGYRPTEGACYEVYLNDGRADGYFDIDIYQSVE 154 >UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes RepID=Q81BV9_BACCR Length = 296 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKN---IVPKEWVAVYYDNP 55 N EI + VA +G +E+ K E+L + +N + + +Y+D+ Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T LR VT+ T+ N G+++ I G+YAV + D++ W + Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGIMV--IPSGKYAVGHFEICQDEYKGAWDFIYG 254 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQP 154 L +S Y+ FEVY N+ + +++YV ++P Sbjct: 255 EWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEP 295 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 8/155 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 ++ + R +A +VG ++ + + F +++ + N++ V VY+D+PD T Sbjct: 133 VRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMTDCTACVGVYHDDPDVTA 192 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 EK R D VTV F + + + + I G+ AV + D + + FF+ L Sbjct: 193 PEKQRADVGVTVDDQF---QPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWLP 249 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAV 152 DS +E P +E+Y+N+ ++ W ++ V + Sbjct: 250 DSGHEPGDFPAYEIYVNDASQLPPDQWLTDICVPL 284 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 173 bits (439), Expect = 1e-42, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 9/160 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPD 56 MN +K VA VGP+ +V + +++L+ W ++++ + +++ +DNP Sbjct: 189 MNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWTPDRICLSIAHDNPK 248 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T K R D + +P F V +T+I GG+YA W Q F Sbjct: 249 VTEPAKCRLDAAIVIPQDFK---ADGDVNVTDIAGGKYAAGAWVGDARAIGSAWDQLFGK 305 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 L +S + +PCFE+Y + + E+ + V+P Sbjct: 306 WLPESGDQPDHRPCFELYRGEFHDPKTHNFRCELCLPVRP 345 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 173 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 6/156 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59 I+ E V VGP+ Q + K F+ L W+ N++ + V VYYD+P Sbjct: 159 EVVIRHVEPIEVLSVDHVGPYMQ-IGKAFDALFGWLAKHNLLAGQMRMVGVYYDDPGVVA 217 Query: 60 AEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +LR V +P S V + + GG+YAV R D + + + L Sbjct: 218 ESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLYGTWL 277 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S E P FE YLN+ + D+ E+ + + Sbjct: 278 VQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPL 313 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 172 bits (435), Expect = 5e-42, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 12/161 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55 + ++ ++ +A VGP+ + + + W + ++ E V +Y+DNP Sbjct: 149 SINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCAWAGPRGLLGAPNSEMVCIYHDNP 208 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T +KLR VTV E S + L I G+Y A + D+A W Sbjct: 209 EITEDDKLRISLGVTVAPG---TETSGEINLLTIPAGKYVCARFELTSKDYAGAWNTLMG 265 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQP 154 L +S Y+ +P +E YL++ +ED G +E+ + V+P Sbjct: 266 -WLPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRMGVKP 305 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 171 bits (434), Expect = 6e-42, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDE 57 M+ ++K ++ V VG +E++ + + + QL+ + ++ I ++ A YDNP Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVL 229 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP K R + + +P + + I GQYAV + G + + F++ Sbjct: 230 TPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHW 289 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 L S YE P E YLN+ DG+ ++E+Y+ ++ Sbjct: 290 LPQSGYEPDHFPVIEHYLNDARVDGFVEMEIYIKLKA 326 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 170 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 EI+ ++ V VGP+ + V K +E+L W K + + E++ + YD+PD TP Sbjct: 145 EVEIRTRDEIQVVFIRHVGPYPK-VTKAWEKLCGWGFGKGLFSEKTEFLGLSYDDPDITP 203 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 K+R D TV P + L I GG+YAV + + + + L Sbjct: 204 EGKIRYDACFTVNEEVETPP---EMGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLP 260 Query: 120 DSAYEMLPK-PCFEVYLNNGAEDGYWD--IEMYVAV 152 S Y++ P FE Y+ + + E+++AV Sbjct: 261 SSGYQLKNTIPSFEKYIKVPPDVPPEEAVTEIWLAV 296 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 169 bits (428), Expect = 3e-41, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 MN + + V G + + QLM +V S ++ E + + +D+P+ T Sbjct: 126 MNINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLIQPETIMIGISHDDPNIT 185 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + +R D T+ LPE G+ I GG+YA A+ + + ++ + L Sbjct: 186 LVDNIRYDACATIVTEMELPE---GIDRKTILGGKYAKALHKGTYEKLSEAYSYLLLKWL 242 Query: 119 QDSAYEMLPKPCFEVYLN-NGAEDGYWDI--EMYVAVQ 153 DS +E+ +PCFEVYLN + ++ E+Y+ ++ Sbjct: 243 PDSGFELRDQPCFEVYLNRDPRRTKPENLKTEIYIPIK 280 >UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b RepID=C8Q848_9ENTR Length = 153 Score = 169 bits (428), Expect = 3e-41, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 2/154 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M I + + G+ L GPW++TV +GF QL WV +++ + EW+A+YY NP P Sbjct: 1 MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWV-ARHALQGEWMAIYYGNPQVVPP 59 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++L +TV+TVP F L EG+ + GG Y V +DF W FF L Q Sbjct: 60 QELSVETVLTVPADFALAVG-EGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQQR 118 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 S +++ +PC+E YL++G++ G W + MY+ V+P Sbjct: 119 SDWQVDDRPCYEHYLSDGSQSGNWLLNMYIPVRP 152 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 10/159 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59 I+ E + VG + Q + K F+ L W+ N++ + + VY+D+P Sbjct: 118 EVVIRYVEPMEILSVDHVGSYMQ-IGKAFDALFGWLAKHNLLAGQMRMIGVYFDDPGVVE 176 Query: 60 AEKLRCDTVVTVPGYFTLPENSE-----GVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 + LR V +PG + V +T I GG+YAV D + + Sbjct: 177 EQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAAYDWLY 236 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVA 151 + L S E P FE YLN+ E ++ E+ +A Sbjct: 237 GTWLVQSGREAADAPVFEEYLNSPKETAPAELVTEICLA 275 >UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC1_DESAD Length = 153 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 M+ +I + +A VGP+E+ V K +E+L W + + VY+D+P + Sbjct: 1 MDVQIWTLDPAKMAYAEHVGPYEE-VGKAWEKLCAWAGPNGHFNEKTRFYGVYHDDPGQV 59 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 PA +LR + +T+ +P G+ L +GG+YAV + W +F+ L Sbjct: 60 PAAELRSEACITLENEVEVP---AGIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWL 116 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGY-WDIEM-YVAVQ 153 S PC+E Y+N+ + + + ++ Sbjct: 117 PQSGETHAEAPCYEQYMNDPNNTKPEHLVTILLMPLK 153 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 7/157 (4%) Query: 2 NYEIKQEE-KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 + I Q + + + G + + + FE+L W + + + +AVY+ +PD T Sbjct: 148 SVSISQLDTPIHMVVYPHQGSYM-NIGQAFEKLSGWAGMRQLFDQTTRMMAVYFHDPDNT 206 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P +LR +T+ +P + +I G YAV + D + + FF + L Sbjct: 207 PEAELRSLAGITLTPE-KVPNLEAPLEHYDIQSGNYAVLRYKGPYADMHRAYKWFFGTWL 265 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 +S YE+ +P FE YLN+ + D+ ++Y+ ++ Sbjct: 266 AESGYEVADQPPFEEYLNDPRQVAPNDLLTDIYMPLK 302 >UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus RepID=A7GQI7_BACCN Length = 152 Score = 165 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 MN +I+ K +A VGP+ + E+L W K + + + + +DNP+ T Sbjct: 1 MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHLDETAIVLGISHDNPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E R D + + + V +E+ GG+YA+ + K W + F++LL Sbjct: 61 PPESCRYDACIVIEKN---EPIDDFVAESELPGGKYAIYEVEHTAEAIQKAWIEIFSNLL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 +S YE+ +P FE Y+ ++ E+ V ++ K Sbjct: 118 -NSDYEIDTRPVFERYMKKMVDN--HLCEICVPIRAK 151 >UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2BPM6_9GAMM Length = 292 Score = 164 bits (416), Expect = 7e-40, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 4/147 (2%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59 N E+ + E + G+ G + + + F++L M+ SK ++ E + +YY++P Sbjct: 139 NVEMMEFETTNLLGYEHKGDYME-IGNAFDKLFMFAGSKRLIGPETRSIGIYYNDPGSVD 197 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A +LR ++V E + L I G+ A + + + KP+ FF L Sbjct: 198 ASELRSHACISVEAPRDAEEEQDPENLQ-IPAGRCATLLFKGPYAELEKPYNWFFGQWLP 256 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146 S E P FE YLN+ ++ Sbjct: 257 QSGLEAADFPPFEEYLNDPRTTAPSEL 283 >UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio RepID=B8DR99_DESVM Length = 156 Score = 164 bits (416), Expect = 7e-40, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 7/158 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M I++ + VAG ++GP+ ++ K ++ L W+ + + ++ + +D+P+ T Sbjct: 1 MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQVTSASTMFLGLCHDDPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E++R D +VTVP F E + VI+ I +YAVAV + W + L Sbjct: 61 PPERIRYDAMVTVPEDF---EPDDYVIVRVIRAREYAVAVHKGPYATLPWSWSALYWEWL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 S L P E YLN+ ++ +Y+ + P Sbjct: 118 PVSGRTPLGAPRMEAYLNDPGATPEDELLTHLYLPLAP 155 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 164 bits (415), Expect = 8e-40, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 5/151 (3%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKL 63 E E T+A + GP+ Q ++ + L W +K + + +Y+DNP+ TP EK Sbjct: 153 ETTTIEAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENAIFIYHDNPEITPDEKC 212 Query: 64 RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAKPWYQFFNSLLQDSA 122 R D VP + S V L GG YA V +++ + W + L+ D+ Sbjct: 213 RTDICFRVPAD---TQASGRVELQVFPGGSYAYIRQTVKQMNEYGQAWSELM-KLVVDTG 268 Query: 123 YEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 E +PCFE+Y + + D+ AV+ Sbjct: 269 LESDERPCFELYHSFDPQTYVSDVSFCTAVK 299 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 9/161 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55 EI + + G + T K E+L + +N++ + +A+Y+DNP Sbjct: 146 EIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNP 205 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 T +LR +T+P + EN + I G+Y V + +++ W +N Sbjct: 206 QFTQEHQLRTSICMTIPDNIVVKENDN-LGNMIIPSGKYLVGHFDISKSEYSDAWDFMYN 264 Query: 116 SLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQP 154 L + Y++ FEVYLNN +++Y+ ++P Sbjct: 265 EWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPIEP 305 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 162 bits (410), Expect = 4e-39, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 5/156 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 EI++ G + + V FE++ WV ++ + + ++YD+PD TP Sbjct: 139 EVEIRRLPALRGYAVTHTGAYMK-VGDAFERIGAWVGQHGLIGPGAKMIGIFYDDPDTTP 197 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR V I GG+YAV + D + + L+ Sbjct: 198 EAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLR 257 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S E P FE+YLN + D+ E+++ ++ Sbjct: 258 HSGREAADAPPFELYLNTPMDTAPADLRTEIHLPLR 293 >UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4 Length = 286 Score = 161 bits (409), Expect = 4e-39, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 3/150 (2%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKL 63 + + + RT+A + GP+ + QL W ++ + EW+ +Y+DNP+ TP + Sbjct: 139 KTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLAQGEWIFIYHDNPEVTPPAQC 198 Query: 64 RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAY 123 R D VTVP + V + I G+YA + + P +Q + + Sbjct: 199 RTDIGVTVPAG---TVGAGEVEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGDIVAAGL 255 Query: 124 EMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 PCFE+Y + + D+ +VQ Sbjct: 256 AFGDGPCFELYHSVSNDPLRDDVSFCSSVQ 285 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 161 bits (408), Expect = 6e-39, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPA 60 EIK+ +R++ G + + + F +L + S+ ++ V +YYD+P P Sbjct: 133 VEIKEVPERSLQALFHRGSYFE-MGVVFSKLAAMLSSRGVIRKCGPIVGIYYDDPSLVPL 191 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++LR VP F N+EG+ I GG+ AV + ++ + L Sbjct: 192 DELRSHVGAVVPQNFA---NTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVWLPT 248 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153 S E +PC+EV+LN+ D +E+++ +Q Sbjct: 249 SGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPLQ 283 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 8/157 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPA 60 +++ +R +A VG + V K +E++ +++ + V +YYD+P P Sbjct: 117 VKVEDAPERRLAAMAHVGAY-NGVSKSYEKVAAVFTIRDLWKHARGMVGIYYDDPSTVPE 175 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 +LR V + +P+ E V+ I G + AV V + + + + L Sbjct: 176 AELRSYAAVELADDVVVPDPLEEVL---IRGDESAVLVMKGAYTGLQEAYEWLYGQWLPQ 232 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 S +P +E+YLN+ + D+ ++YV +QPK Sbjct: 233 SGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPLQPK 269 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 160 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 ++ ++ A VG + + F ++ D + + + + V YD+P T Sbjct: 176 LDVSTREFPTYPFAFLRHVGRYND-IGPVFRRVAAIADERRLFGPDTKVMMVAYDDPSVT 234 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 ++LR D V++ ++ +I EI GG YAV V + D + S L Sbjct: 235 DEQRLRSDAGVSLTDP---TVDTGELIKGEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWL 291 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 +S YE +PC +VYLN + D+ E+ V ++ Sbjct: 292 PNSGYEAADRPCVDVYLNKVEDTRPEDLLTEIRVPIR 328 >UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium carotovorum subsp. carotovorum RepID=C6DEF0_PECCP Length = 154 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M+ I+ E V +VGP+ + + +GF++++ W ++ + +A Y+D+P + A Sbjct: 1 MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSIDKSLAFYWDDPSKVEA 60 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++LR D +T + G+ I GG YAV V DFAK W F+ + + Sbjct: 61 DELRADVAITCKEMPSTLPEDVGIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA-INA 119 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 Y C+E YL +G+ +G WDIE++ +V+ Sbjct: 120 QGYCPAGDICYESYLCDGS-NGKWDIEIWQSVEA 152 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 N ++ E R + GP+ + + + FE +S+N+ P + VY D P E P Sbjct: 127 NVTLRDEPARHLVTVPHRGPYAE-IGRAFEHFSALANSRNLWPQLGPVLGVYLDAPGEMP 185 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 ++LR G T EG+ + GG+ AV + A + F L Sbjct: 186 EDQLRSYAGAEYRGDGT----PEGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGGWLP 241 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S +PC+E+YLN+ ++ E+ + ++ Sbjct: 242 QSGETPADQPCYEIYLNDPRATAPEELLTEIVLPLR 277 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 158 bits (399), Expect = 6e-38, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 + EI++ + GP+ + + K F L + ++ +P+ E +AVY D+P P Sbjct: 128 SIEIQRFDAIPAFAIRHDGPYIE-IGKAFGMLFGQLAARGALPERIEMIAVYLDDPTAVP 186 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+LR + PG L V EI GG YAV + D + + F + L Sbjct: 187 LERLRSFAALAAPGGKDL---DPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGTWLP 243 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S E +P E YLN+ + D+ ++ + ++ Sbjct: 244 QSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLR 279 >UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM Length = 305 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%) Query: 7 QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCD 66 TVA + G + + + +L W + + E + +Y D+P+ TPA+K R D Sbjct: 161 TLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHGLADGECLFIYLDSPEITPADKCRTD 220 Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSLLQDSAYEM 125 +TVP G+ + GG YA+ V + W + ++++ + E+ Sbjct: 221 ICLTVPDD---TATGNGIEKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSAVI-AAQLEI 276 Query: 126 LPKPCFEVYLNNGAEDGYWDIEMYVAV 152 +PCFE Y + A G D+ VAV Sbjct: 277 DDRPCFEQYHHYDAATGKADVSFCVAV 303 >UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein; putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9 Length = 155 Score = 156 bits (396), Expect = 1e-37, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 4/155 (2%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M I + + + GP+ Q++ GFE+LM W + +W+A+YYDNP E Sbjct: 1 MQVRIVSLAAQPLFVLRVQGPFAQSLGPGFERLMAWSARHGL-RGQWMALYYDNPREVAP 59 Query: 61 EKLRCDTVVTVPGYFTLPENSE--GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + LR D +T TLP + E G+ + GG YA+A RV +DFA PW F+ L Sbjct: 60 DALRADVALTT-ASVTLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQAL 118 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 Y PCFE YL++G G W +E+ V V+ Sbjct: 119 PACGYRPDGGPCFERYLSDGRGSGEWLLELGVPVR 153 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 + EIK R V L G ++ + +L ++ + + ++ + +Y+D+P Sbjct: 131 LKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKLPMGDFSPLCIYHDDPKV 190 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TPAEKLR D + +P V + G+YA+ + + D+ + + Sbjct: 191 TPAEKLRTDVCMVMPVQVA---PKGDVGFKTLPAGRYAIFLYKGTYDNLQAVYDTIYGKC 247 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L + + +P E YLNN E ++ E+Y+ V+ Sbjct: 248 LPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPVE 285 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE---QTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNP 55 + EI++E+ + GP++ + F++L W D + ++ W +Y+D Sbjct: 137 LKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLISSTSRWFVIYHDFG 196 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 +ET ++LR ++V + S + + + GQYAV V ++ K WY + Sbjct: 197 NETDEDQLRLSVCMSVDRNLAV---SGDIGILNLHEGQYAVGSFMVEPSEYDKAWYYMYG 253 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 L S ++ + E Y + +E+Y+ + Sbjct: 254 KWLPTSGHKPDDRFSLEHYPKVEEQGDKRLVEIYIPI 290 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDET 58 + E+K VA GP+ Q + ++ L W + +V +++ + YD+P+ T Sbjct: 154 LEPEVKVLAPVRVAFVRHTGPYAQ-CEAAWKTLCDWAFPQGLVMAQTQFMGICYDDPEVT 212 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +K+R D ++VP + V + E+ GG+Y AV + + Sbjct: 213 APDKIRYDACISVPDNV---QAEHPVAIREVEGGEYVCAVWKGPYTGLTNAYAALCGQWG 269 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 S E P EVYLN+ ++ E+ + + P+ Sbjct: 270 GRSGREFRAAPSVEVYLNDCTSTPEQELLTEIRMPLMPR 308 >UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK9_DESVV Length = 156 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 7/158 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 MN I+ VA H GP+ + +++L W+ ++ E +V V D P Sbjct: 1 MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTFETLFVGVLGDTPCGL 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +E D V+VP + E V + I GG A V + A+ W + L Sbjct: 61 ASESTGYDAGVSVPQHI---EADGYVSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 S PC EVYLN ++ +++ + P Sbjct: 118 PASGRITREAPCVEVYLNAPDSTPDHELLTRLHLPLSP 155 >UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB Length = 299 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + IK T+A G + + + K FE+L + S+ ++ A+YY +P Sbjct: 145 DVAIKTLPSETLAVLPHRGAYME-IGKAFEKLFGILVSRQVIGQIGAMKALYYSDPTHVA 203 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + L+ + F + + E GG YAV + D + + L Sbjct: 204 EDDLQSAAGAVIGDGFPVE---APLETRETRGGDYAVLRYKGPYADMKWAYEWLYGEWLT 260 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 S E PC EVYLNN + D+ ++ + ++P Sbjct: 261 QSGREPDDAPCLEVYLNNPRDTAPADLLTDICLPLKP 297 >UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVG7_9BACL Length = 153 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 7/154 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 M +++++ + A VGP+ + E++ W +N++ + + +DNP+ T Sbjct: 1 MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLNHSAILLGIPWDNPETT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P + R D + + P + + V + EI+GG Y V + + W + + L Sbjct: 61 PPKNCRYDACLVISQD--EPLDDDTVHIGEISGGDYLVCTIKHTAQAMQQAWAELMPT-L 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 Q Y++ +P E Y G E+ V + Sbjct: 118 QAKGYQIDDRPILERY--TGEMLLKEFCEICVPI 149 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 8/160 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKEW---VAVYYDNPD 56 + +I + V +G ++ E+L + +N++ ++ +AVY+ +PD Sbjct: 142 DVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEKKSKPLAVYHSHPD 201 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 + EK R +++ T+ S+ + I+ G YAVA ++ ++ W + Sbjct: 202 FSDEEKQRTSICLSIKEPITVDGKSD-IGYMSISSGTYAVAHFEILQSEYGDAWDFLYGE 260 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQP 154 L S Y FEVY+NN E + +++Y+ ++P Sbjct: 261 WLPRSGYLPRNYFPFEVYVNNPNEHSENKHIVDIYLPIEP 300 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 ++ IK VA VGP++Q + + L + +++ + +D+P T Sbjct: 137 LDVVIKTLPLMKVACVRHVGPYDQ-CEPAWASLCAKAGPLGLFGPDTKFIGIGHDDPQIT 195 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P EK+R D +TVP F + + + I G YA AV + + A + Sbjct: 196 PPEKIRYDACMTVPDSFAGTPD---LPVASIGGRDYASAVVKGPYTNLAPAYAWLCGVWG 252 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 D E +P E+YLN+ + E+ V V P Sbjct: 253 PDCGREFAMEPSMEIYLNDPKTTPPDQLLTEILVPVGP 290 >UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE Length = 315 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 10/158 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDET 58 E+K+ +G +++ + K +E+L+ W + + + + V +D+P T Sbjct: 162 KIEVKEMPDMKAVYCRHMGAFKE-IVKAYEKLIKWAEPRGLYIPNVTKSATVTHDDPSVT 220 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 K+R + V G + I GG+YAV + +DF K W Sbjct: 221 ELSKVRQSACIIVEGDVK---GEGEIGNLVIPGGKYAVGHFELGTEDFEKAWNTMC-KWF 276 Query: 119 QDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQP 154 +S Y+ +E+Y N+ + +++ + ++P Sbjct: 277 TESGYQQGDGCTYELYHNSHRTHPENKHIVDICIPIKP 314 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 146 bits (368), Expect = 2e-34, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59 + +I+ + +A G + + ++++ + + N P+ VYYDNP+ TP Sbjct: 122 DVDIQTTSDKRLAALSHRGDYAEG-SVAYQKVATIISTGNHWPQTRGMAGVYYDNPEVTP 180 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E LR V G +G+ ++TGG+YAV + A+ + + L Sbjct: 181 TEDLRSHAGVLWEGGAI----PDGLEEVQLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLS 236 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S + P FE YLN+ D+ ++Y+ ++ Sbjct: 237 SSQESLRDAPSFEHYLNDPTNTAPADLLTDIYMPLE 272 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 8/150 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK--NIVP--KEWVAVYYDNPD 56 MN IK + R +A G + V + +L+ W S+ N+ P E YD+P Sbjct: 128 MNIVIKNMQARRLAVVEHHGH-PEKVGESINKLINWAKSQAMNLKPKAGEAFGFAYDDPK 186 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T E + D +TVP L N VI + G+YAVA+ D+ Y + Sbjct: 187 TTEPEAFQFDLGITVPEQLKLEGN---VIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI 146 L +S E+ PC Y N E ++ Sbjct: 244 WLPNSGEELGDLPCIFCYYNFDHEVAETEL 273 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 142 bits (358), Expect = 3e-33, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPK-EWVAVYYDNPDET 58 M + VA VGP+ +V + + + W ++ ++P D+P T Sbjct: 163 MQVTLTTLPAVRVAYMRHVGPYGVSVNQFWTGTFLPWCFAQGLLPGASSFGRGLDDPHIT 222 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 E R D +V VP F + + + GG+YA+A W + L Sbjct: 223 APEHCRYDAMVQVPDDFVARSPA---SMATLPGGRYAIAPFEGTVPQLTVAWTELLRDWL 279 Query: 119 QDSAYEMLPKPCFEVYLNNG---AEDGYWDIEMYVAVQP 154 S ++ +P FE + A G E+ + VQP Sbjct: 280 PASGMKLDGRPLFEHMPPDARYDAATGVMQCELCIPVQP 318 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 11/155 (7%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETP 59 EIK + +A +G +Q F++LM W ++ + +Y+D+ T Sbjct: 157 VEIKTLPQLELAYISHIG--DQGQAHTFQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITA 214 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +E++R + + + V + G+ VA + D+F K W + F L Sbjct: 215 SEQVRMSACIVLKEPVS---TDGLVGTMTMPSGKCVVARMELAMDEFGKAWTELF-VWLN 270 Query: 120 DSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152 + Y+ + CFE+Y N+ ++ +++ + + Sbjct: 271 RNGYKTTERNCFEIYGNDPSTHPQHHFIVDLCIPI 305 Score = 38.7 bits (89), Expect = 0.055, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 23 EQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGY 74 K + +L +W++ E +Y ++P P D + + G+ Sbjct: 255 MDEFGKAWTELFVWLNRNGYKTTERNCFEIYGNDPSTHPQHHFIVDLCIPIDGH 308 >UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC family n=1 Tax=Chromobacterium violaceum RepID=Q7NYH2_CHRVO Length = 284 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 4/145 (2%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPA 60 EI + + V H GP+ + + K F+ L + V P +Y D+ +TPA Sbjct: 132 VEIVERDAVKVLMRHHRGPYME-IGKAFDALRAVQGPQQGVGAPSRSFGLYLDDQAQTPA 190 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 R TVP F + +G I G+YA + + + W + L Sbjct: 191 ADCRSIACATVPA-FMEGKAMDGFEWGSIPAGRYAAVLHTGPYSELGECWDWLYRHWLPA 249 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD 145 S PC E YLN + + Sbjct: 250 SGEMPGDTPCVEEYLNAPYDTPPAE 274 >UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21DM1_SACD2 Length = 287 Score = 138 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 8/154 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 +I++ K + G G + + FE++ + SK + + +YYD+P Sbjct: 136 VDIEKFNKVELGGLAHQGDYLD-IGAVFEKVFVSAGSKQFLNEHSRSFGIYYDDPTSKDK 194 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 LR VT+ G+ + G +AV + + + F+ L Sbjct: 195 SALRSHACVTLNPQQV---KEAGLDYLTLEAGNHAVLTFTGPYSELEQAYEWFYGEWLPQ 251 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S Y++ +P FE YLN+ ++ ++Y+ + Sbjct: 252 SGYQLADRPPFEEYLNDPKTVPPSELLTKIYLPL 285 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 135 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 6/153 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + +I+ + R + GP+ Q + + FE+ V ++ + P + +Y+D+P+ Sbjct: 127 DVKIEDQPARRLGVIDHRGPYIQ-IGEAFEKAGSTVMARGLGPHLGAMLGIYFDDPENGA 185 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 AE LR + + V L GG++A+ A+ + F L Sbjct: 186 AEDLRSAAGFEMDEAAEITPPLREVRLE---GGKHAILTHTGPYTGLAQAYKYLFGEWLA 242 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + P FE+Y+N D+ + V Sbjct: 243 TAGEMPREAPPFELYVNTPMNTAPDDLVTLIGV 275 >UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6E7_9RHIZ Length = 283 Score = 134 bits (337), Expect = 9e-31, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 8/155 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--YYDNPDETP 59 + I++ + GF GP+ + + FE+ V N+ + Y+ +PD T Sbjct: 132 DVRIEEMGPAKLVGFEHTGPYTE-IGSAFEKFYAEVGPANLASQAMAIAAAYFSDPDITA 190 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+ R + V + + G +I G+YAV + + K + F+ + L Sbjct: 191 PEECRSLAGMIVSPGLDV---AGGFDRFDILAGRYAVLQHKGAYAELPKAYQWFYGAWLA 247 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 DS P E YLN+ ++ E+ + + Sbjct: 248 DSGESAAAAPAVEKYLNSPMNTAPAELVTEICMPL 282 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 M +I + +A G + + + W S + P + Y++P Sbjct: 132 MTVDIVHFDTTKIALLKHRGSPSR-IMESVAIFREWRKSSGLSPITKSRTFNIIYEDPAV 190 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 AE RCD V + +N GVI + + GG+YAV D ++ Y + Sbjct: 191 VVAEDFRCDLAAEVMKE--VDDNEYGVINSTLAGGRYAVVRHFGPYDSISRCLYFLYGEW 248 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L DS E+ PCF Y N+ E ++ ++Y+ ++ Sbjct: 249 LPDSGEELGDAPCFFQYHNHFPEVAEHELITDVYLPLK 286 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 131 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 M+ I +A G + + + W + + P + + +D+P Sbjct: 135 MDVNIISFPTTRIAVLQHRGSPDLVNTTA-ARFIAWRKTSGLSPVATSDTWGIAWDDPQT 193 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E R D TV G + EN+ GVI EI GG+ AV D A + + Sbjct: 194 TPQEAFRFDICGTVAGP--VGENAFGVINGEIPGGRCAVVRHHGSLDTLANSVWFLYRDW 251 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L S + P + YLN E ++ ++Y+ + Sbjct: 252 LPASGETLRDFPVYFRYLNFVHEVAEHELQTDIYLPL 288 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 12/160 (7%) Query: 1 MNYEIK--QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNP 55 MN +I + ++ +AG +G +++ F++LM W K ++ + + +Y+DNP Sbjct: 145 MNAQIVITELQEIKLAGVMHIGEFDKA-GNMFQRLMEWGAKKRVLATSDFKAITIYHDNP 203 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T KLR T +T+ + + G YAV + D+ W Sbjct: 204 NVTQTSKLRFSTCITISEDI---NADGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMC- 259 Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + ++ YE FE+Y N+ D + +++ + ++ Sbjct: 260 IWVIENGYEFRDGDYFEMYHNDHKTHPDQKFILDICIPLE 299 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 128 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDET 58 +I E + + + G ++ +E+L V ++ + K + + YD+P T Sbjct: 134 KPKIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQKLFTKGIKHIGLPYDDPKIT 193 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A+K+R D + + + V + E+ GG++AV + + FA + FN+ L Sbjct: 194 EADKIRYDACLIIHKDAK---PNGDVGVKELKGGKFAVFLYQGSYKHFADVYDHMFNAWL 250 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 +S +E+ P E Y+++ + E Y+ ++ Sbjct: 251 INSGHELRDAPSREKYISDARRVSEEKLKTEFYIPIK 287 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 127 bits (320), Expect = 9e-29, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 MN ++ + + +A GP + ++ W + P + + YD+PD Sbjct: 134 MNIDLVEFDHTLIAVLEHRGP-AEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDPDT 192 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 K R D V T+P+N++G+I I G+ AV + + + Sbjct: 193 VEPAKFRFDLCAEVKE--TIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW 250 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L +S E+ PCF Y N + D+ ++Y+ +Q Sbjct: 251 LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPLQ 288 >UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4 Length = 302 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 7/153 (4%) Query: 3 YEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMM-WVDSKNIVPKEWVAVYYDNPDETPA 60 +KQ R VA +GP+ +T ++ L+ + + + P +++Y+D PD T Sbjct: 151 ASVKQMPARRVAYMRRMGPYGKETCEQAHRDLLALFASDEAMTPAGTLSLYWDIPDITDE 210 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 + R D + + + I G YAV GD W F L Sbjct: 211 TRCRTDICIELGPEI---HAGRQLTTQTIAAGPYAVCQFIARGDQLVTTWETAFG-WLVS 266 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAV 152 +PC+E Y D + ++ + + Sbjct: 267 KGLSCDDRPCYEQYHAGTDPDRDHYVFDICIPL 299 >UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus RepID=B9J2X1_BACCQ Length = 159 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 7/158 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M IK VA G + + + +L+ W + P E ++ + DNP+ Sbjct: 1 MKVIIKNLPSLEVAFIRRTGSYFEPQDH-WGKLLNWSIENKLYPPEQSFIGISLDNPELV 59 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + R D VT+P F ++ + V + GG YA+ ++ + + L Sbjct: 60 ASHMCRHDACVTIPKNFEKEQHED-VQFKSVDGGLYALYEFYDKPHKLSEVYRYMYAVWL 118 Query: 119 QDSAYEML-PKPCFEVYLNNGAED--GYWDIEMYVAVQ 153 +S Y + E +NN AED G ++++V+++ Sbjct: 119 PNSEYSADYDRDNLEFCMNNVAEDLEGKLKVDLFVSIK 156 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 MN I + +A +G ++ ++ Q + W + P + + + +PD+ Sbjct: 129 MNVNIVERPAEKIAYLSHLGSPDKVLETA-AQFIAWRKETGLSPVTKSKTYGIPFADPDQ 187 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TPA++ R D ++ +PENS GV EI G+YA D Y F + Sbjct: 188 TPADEFRFDIAGSIEK--AVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRNW 245 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L + E P F Y N E D+ ++Y+ ++ Sbjct: 246 LPEQPEEAGDYPVFFHYHNFVHEVNECDLITDIYLLLK 283 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 E++ + T G G + + + + +LM +P V + YD+PD T A Sbjct: 122 VELRDDPALTCIGLRHTGSYSE-CGQTWGELMAHAAKAGWMPHVLGSVGLAYDDPDITAA 180 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 E+LR D + + +L E+ G+YA+ + R + + + L Sbjct: 181 ERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYVGLIGRALPF 240 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 E+ +P E YL++ A ++ E+ V ++ + Sbjct: 241 RGVELANEPVIERYLDDPATVPLHELRTEICVRIETR 277 >UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=Rhodobacter sphaeroides RepID=B9KLE9_RHOSK Length = 156 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 8/154 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPA 60 I++ R +A G +E+ + F Q+ ++ ++++ + + VY+DNP P Sbjct: 6 VHIRETSPRRLAALRHTGAFEE-IGATFGQICQILEERSLLSQAGCMIGVYWDNPLLAPP 64 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 L + VP + E + + GG++AV A+ + FF+ L + Sbjct: 65 GALHSHAGIDVPEGMEIAPPLEELR---LAGGRHAVLQYTGPYSGLARAYRYFFSQWLPE 121 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + P E+Y N E + E+ V + Sbjct: 122 AREIQAEGPLIEIYRNAAMETPSDQLVTEICVPL 155 >UniRef50_A6LWY8 Transcription activator, effector binding n=5 Tax=Clostridium RepID=A6LWY8_CLOB8 Length = 151 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 8/155 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M+ I+ + +A VGP+ + EQL W ++ + + + DNP+ T Sbjct: 1 MDINIEMIPEYKIAYIRKVGPYGLENVQVMEQLKSWAKENSLFNERSIIIGITQDNPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 R D + V F + + T GG+Y V D K W + F L Sbjct: 61 EPADCRYDACLVVSDEFDFESKNINIGKTI--GGKYCVFKINHTVDAIQKAWIEIFLE-L 117 Query: 119 QDSAYEMLPKP-CFEVYLNNGAEDGYWDIEMYVAV 152 Y++ K E Y + Y E+ V + Sbjct: 118 SKRNYKIDDKSKIIERYTMQMISNHYC--EICVPI 150 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 9/155 (5%) Query: 4 EIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 +I + E +++ L G + K +EQL V S+ + K E + V YD+P T A Sbjct: 133 KIVELEPKSLIYVALTGEYGTLNYNKAYEQLWGVVKSQKLFTKGIESICVSYDDPKITEA 192 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 R + + + + S V + GG+YAV + + + + D Sbjct: 193 SLQRSEVSLAI---HKPAKPSGEVSCKTLAGGKYAVFFYQGSYTQLSSVYDAAMR-WVVD 248 Query: 121 SAYEMLPKPCFEVYLNNGA--EDGYWDIEMYVAVQ 153 S YE+ +P FE YLN+ +G E+Y+ VQ Sbjct: 249 SEYEVRDEPMFEKYLNDCRRTPEGKLKTEIYIPVQ 283 >UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales RepID=Q64RP2_BACFR Length = 280 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 12/159 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56 + EI E + + ++G + E+ + + +L ++ ++ W+ + +D+P Sbjct: 128 LKPEILTEPELKLVYIRIIGRYGEEEPYIEAWRKLRDFLQINGLLTPSTRWIGISFDDPT 187 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T E+ R TV + + I G+YAV R + + + ++ Sbjct: 188 VTKTEQCRFYACATVEHDVS---PQGAFGMKTIPQGRYAVYTLRGSYSGLQEMYDRIYSH 244 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153 L + FE YLN + D +Y+ ++ Sbjct: 245 PLPTA---FRDATSFEEYLNCEPDTEEKDYVTRIYIPIE 280 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 53/158 (33%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 M I + VA GP V + + W P + YDNPD Sbjct: 135 MQIRIVNFAETHVAALEHQGPPG-LVSESVARFRQWRMHSGQSPVASSRTFGIPYDNPDT 193 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TPA R + + N GV I G+ AV D + Y + Sbjct: 194 TPAHAFRFAVCGEI--DEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPLYRDW 251 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153 L S E+ P F YL+ E W ++YV ++ Sbjct: 252 LPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPLK 289 >UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales RepID=Q2KTK1_BORA1 Length = 279 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 13/160 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-----PKEWVAVYYDNPD 56 + + T+A G + Q + + F++L + ++ ++ W+ VYYD+P Sbjct: 126 SVNLVSYPGLTLAALPHQGDY-QRIGESFDRLALLAVNQGLIAPHAESGPWIGVYYDDPR 184 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 + +LR V G + + I + V + + F+ Sbjct: 185 QVETGRLRSHACVASKG-----APGDPLQTLVIPAMRCGVVEYLGPYTEIDHAYDWMFSE 239 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 L S E L P FE Y N+ + +Y+ ++ Sbjct: 240 WLPASGEEPLDFPMFEEYANDPKTTPAAALLTRIYLPLRA 279 >UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU Length = 292 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 7/155 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK-EWVAVYYDNPDETP 59 + IK+ G + +++ +++LM W I + + +++DNP TP Sbjct: 139 LEPTIKKIPAFRAVYLRHKG-YNKSIALSWQKLMAWGFEHQISSQARQIGIHHDNPSITP 197 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + R + V F + + E AV + D ++ L Sbjct: 198 LAECRYIAALEVEEGF---RAQGLLGVMEFPPTLCAVFEVQGRYGDVLGLIDYVYHEWLP 254 Query: 120 DSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152 S YE P F +Y N G + ++ + V Sbjct: 255 QSGYEAKTIPAFALYQKNHFLDPLGNFQLDFCLPV 289 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 8/158 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 + I VA G + + + W + + P+ V++D+PD+TP Sbjct: 142 DVRIVDFPDTPVAVMRHEGDPA-LLGDTIRRFIAWRRAAGLPPRVSATFNVFHDDPDDTP 200 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 AE+ R D + N +GV I GG AV DD + L Sbjct: 201 AEQYRLDLCA---ATARVASNPDGVTSGVIPGGPCAVLRQIGSSDDLRAASRFLYGEWLP 257 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155 S E+ P F ++ + + ++++ + P+ Sbjct: 258 RSGRELRDAPFFAQRVSFFPDVPEHEAVTDLFLPLSPR 295 >UniRef50_D1B3I6 Transcription activator effector binding protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3I6_SULD5 Length = 287 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 6/157 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDET 58 ++ +I+ VA G +++T+++ + +L W + +A+++ NP Sbjct: 131 LHVKIQTMPSFDVAYVRHKG-YDRTIQQAWLKLQAWALGHGVDFSDQRMIALHHSNPRFV 189 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + + + +P + + + + I AV + V D K ++ Sbjct: 190 ESSQCHYVACLELPKGREFYRSGD-IGVMRIPQTFCAVFSLKGVYGDLKKYMDVIYHEWF 248 Query: 119 QDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQ 153 SAYE + P F +Y N D +D++ V V+ Sbjct: 249 PQSAYEKIALPSFAIYRENHFINADERFDLDFCVPVR 285 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 9/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 EIK + + ++ + + +L+ + P+ +++++ D+P Sbjct: 221 KPEIKVISPIKIFCIEVGEAYKNKLKYRLLWNKLLHHAEQYEADPRYDKFISLSMDDPSI 280 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP EK R +T+ + +I GG+YAV K + + Sbjct: 281 TPTEKCRFYLGITLRDDTKARPVPG---IMQIPGGRYAVFRHTGSYSSLHKVYRSIYEEW 337 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S Y FE+Y+N+ + ++ E+Y+ V Sbjct: 338 FPKSKYHPQSTFSFEMYMNHPSTTETSELLTEIYIPV 374 >UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL96_9SPHI Length = 290 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 65/154 (42%), Gaps = 8/154 (5%) Query: 4 EIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 +I + + ++G +E + ++K +++LM +V ++ + E + +D+P+ Sbjct: 138 KIIDLPAQQLLSTRILGKYETSVIQKAWQKLMTYVFAQQLFYPTMEMFGISHDHPEIAGD 197 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 + + VT+ + ++ + G+YA+ + + L + Sbjct: 198 ILYQYEACVTLAKPVA---SEGEFVVKTLPAGKYAMFTYQGSYAQLDTVYNLVLKQWLFN 254 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S+Y + P F+ YLN ++ ++++ + Sbjct: 255 SSYSLREAPIFDQYLNTPDNTPEEELLTKIFLPI 288 >UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CE13_9BACE Length = 283 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 11/158 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 E+ +A ++GP+ + + + G+ +L ++ + K W + +D+P Sbjct: 133 EPEVLLISPMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKLQSKATRWFGISFDDPTI 192 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T ++ R +V S + I G+YAV + + + ++ Sbjct: 193 TKKKQCRFYACASVAQRIK---PSGAIGTLTIESGKYAVYTYKGSYSGLLRAYTYIYSR- 248 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 + + FE Y+ ++Y+ +Q K Sbjct: 249 --EKGR-LRNALSFEEYVTWSDNPAKQITKIYIPIQKK 283 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDET 58 + ++ + + VA G E+ ++ +Q + W + + P V +P+ Sbjct: 136 DVKLIELPIQKVAQLEHSGAPEKLMETA-KQFIEWRKTTGLSPVAISRTYGVPNGDPNTM 194 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 AE R +V +P+N GV+ + GG YAV D Y FF L Sbjct: 195 AAEDFRFRFCGSVNE--AVPDNEYGVVTGTLAGGCYAVIRHEGSHDAMESSIYGFFREWL 252 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S M +P F YLN + D+ ++Y+ ++ Sbjct: 253 PQSGKAMRDEPLFFHYLNFIHQVDECDLLTDIYLPLE 289 >UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales RepID=A8EWB5_ARCB4 Length = 292 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 4/154 (2%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I + + G +++++KK +++L W+ + +I + +A+++DNP TP E Sbjct: 139 EPSIVKMPEIKGYYIRHKG-YDKSIKKTWQKLQTWIYTNDIKEYKQMALHHDNPIITPLE 197 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + + V + I G YA D K +++ L +S Sbjct: 198 DCQY-IAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGDVIKLIQWVYHTWLIES 256 Query: 122 AYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQ 153 YE P P + +Y N ++DG + ++ Y+ ++ Sbjct: 257 GYETTPNPSYTIYHKNHFLSDDGEFILDYYLPIR 290 >UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4ERY7_9RHOB Length = 232 Score = 111 bits (277), Expect = 9e-24, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + I++ E VA GP + ++ ++W +K + P E V++ +P T Sbjct: 80 DVTIRETETIPVAIIEHRGPPA-GIGATIQRFILWRKAKGLSPLNSETFNVFHSDPQSTD 138 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + R D V + E+ +GV+ I GG+ AV DD + L Sbjct: 139 PREYRLDIC--VATDRGIDEDEQGVVSGVIPGGRCAVLRVVGNSDDLETASLYLYRDWLP 196 Query: 120 DSAYEMLPKPCF 131 +S E P + Sbjct: 197 ESGEETRDFPLY 208 >UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZSG3_9SPHI Length = 292 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 6/157 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 + Y I+ + G + Q + ++ L+ + + ++ ++ + D+ + Sbjct: 132 LTYSIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLLKEDTHYLGELMDDDEI 191 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 E R + +T+P E + I GQY + + + Q F Sbjct: 192 VKDENCRYNAAITLPQEAVF-EPTGFFNTKTIESGQYVCVTHQGDRNKLDTVYEQIFLHW 250 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + + +E++ KP E YLN+ + D+ E+YV V Sbjct: 251 IVKNEFEIVDKPFLEFYLNDETDTATKDLLTEIYVPV 287 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 10/158 (6%) Query: 5 IKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE-TP 59 I+ E V + P++ K +++L+ +V I E D P T Sbjct: 175 IRVIEPVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGIPDGETEYFTFSRDVPTIITS 234 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+ R V + E S + + I GG+YAV + + L Sbjct: 235 PEQQRIFVCVNNSDHL---EPSGIIGVQTIEGGEYAVFTMYGAYRQLPDVYTYIYRYWLF 291 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 +S Y++ FE YLN+ E + E+Y+ V K Sbjct: 292 NSDYQIRDSMVFEKYLNSPDEVEEDKLMTEIYIPVSKK 329 >UniRef50_O34775 SPBc2 prophage-derived putative transcriptional regulator yosT n=2 Tax=root RepID=YOST_BACSU Length = 149 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 8/155 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDET 58 M I++ + +A F VG + + K+ E W + + + D+P T Sbjct: 1 MKITIEELPELRIAYFRNVGEYGGKQNKELMESFKKWAQLNGVFHNSVILGIPQDDPSIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E+ R D V + F + + + + ++ GG+YAV + + ++ W F+ + Sbjct: 61 PKEECRYDVGVVLNEDFNVLQPA---QVGKLPGGKYAVFLLDHTKEAVSEFWGNIFSEIE 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 ++S M +P E Y + ++ E+ V +Q Sbjct: 118 KNS-LTMRGEPIIERYTSQMIDN--HLCEVLVPIQ 149 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 6/153 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 +I + +R A VG + +++K + L W +S+ + +++ NP + Sbjct: 143 EPKITEVPERMAAYVRHVG-YNRSIKNAWLILKAWANSEGRSFEVQFGLHHSNPAWVELD 201 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 K R + + V I GG +AV V + L S Sbjct: 202 KCRYVACIAIDKPLKYRGV---VNQMVIPGGLHAVFRLHGVYGELLPQISMVLEKWLPAS 258 Query: 122 AYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152 +++ P + Y +N E ++++ Y+ + Sbjct: 259 GFKLRSTPAYVHYHSNHFVNESEAFELDFYLPI 291 >UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA30_9GAMM Length = 280 Score = 108 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 10/155 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETP 59 +I+ V G + ++ F QL + + +P + +YYD+P P Sbjct: 130 VKIRDIAALPVVALPHHGDYM-SIGASFSQLETLLTLRGHLPAPQARYFGIYYDDPAGCP 188 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + + + + + G+YAV R + + + + L Sbjct: 189 TAQ----LRAAAAVALGGADATPPLQTLTLAAGRYAVLEHRGAYAELHRAYDWLYRDWLL 244 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 +S Y++ PC E YLN+ + ++ +Y+ + Sbjct: 245 NSPYQLADAPCLEEYLNDWQQVPPQELRTNIYLPL 279 >UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RP02_RHORT Length = 160 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 8/152 (5%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEK 62 ++ A +GP+ + + F ++ W S+ ++ E + + YD+P TPAE Sbjct: 6 VRPLPAMIFASLRHIGPYGEA-GETFRKITDWAVSEGVMTPETQILGLSYDDPKTTPAEI 64 Query: 63 LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122 LR D VT+ LP G+ L + + + + + + + + + +L + Sbjct: 65 LRYDACVTLKTPVALPP---GMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPT 121 Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + E+Y+N+ A D+ E+ VAV Sbjct: 122 LVPIATGAIEIYVNDPATTAPADLITELGVAV 153 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAE 61 ++ + VA GP + ++ + W P+ + V YD+P+ E Sbjct: 146 LRTLDPIPVAALEHRGPPATLMASV-QRFIAWRRGSQAAPEPSTRTLGVLYDDPESVAPE 204 Query: 62 KLRCDTVVTVPG--YFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 R D + GV+ I GG+YAVA R D + + L Sbjct: 205 DFRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRGSTDAIGETVMGLYRDWLP 264 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAV 152 S + P Y+ + ++Y+ + Sbjct: 265 GSGERVRDAPLVFHYIERVPRVAEHEQVTDVYLPL 299 >UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides RepID=Q5LFV9_BACFN Length = 382 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 9/161 (5%) Query: 2 NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 + IK+ ++ VA +Q + Q++ + N+ K + V++ D+ D Sbjct: 222 DCSIKRIKEFKVAYLKFERTHRNKQAYSTLWGQIIEFAKKYNLTDKGFKYVSISLDSLDI 281 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T +K R +TVP +P+ G I G Y+V + + K + + Sbjct: 282 TEIDKCRFLIGITVPYSMEVPK---GFGTLNIQAGLYSVFNIKGGYHELNKIYRNVYLDW 338 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPKH 156 L +S Y + + FE+Y N + ++ E+Y+ ++ K Sbjct: 339 LPNSKYRLREQMTFEIYANTPNKTSTDELVTEIYLPIEAKQ 379 >UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides RepID=D0TT37_9BACE Length = 383 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 9/157 (5%) Query: 2 NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 IK+ +A + ++QL+ + ++ + K V++ D P Sbjct: 225 ELSIKKVHNMRIAYLKLERTNNISHSFSLLWKQLLQFSENYELPSKGCQYVSLTLDYPLI 284 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E R VT+P F P+ G + EI+ G+YA+ + + + + + + Sbjct: 285 TPEEHSRFMVGVTLPQSFETPK---GFGMYEISSGEYAIFRFKGLYHELNRVYRHIYLDW 341 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L S Y + FE Y+N + ++ +Y+ V Sbjct: 342 LPTSDYTLREPFTFETYINTPEKTPASELITAIYIPV 378 >UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium RepID=A5HZP6_CLOBH Length = 278 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 13/155 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58 I+ V +G + E+ ++ ++ ++ YD+P T Sbjct: 134 KIIIENLADFKVIYERYIGNYIDIGDNWYSFMERYKTYIKPDTLLIEK----SYDDPSIT 189 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 EK D +TV L +T I GG++AV D + FN L Sbjct: 190 ELEKCIYDLCITVGEDVELE------NVTTIKGGKFAVYRFNGYIHDIFVTFQGVFNIWL 243 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 S Y+M + +Y N ++ + +++ +A++ Sbjct: 244 PRSGYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK 278 >UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae RepID=YGIV_ECO57 Length = 160 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 ++ I VA + + + +MW + P + V +D+P Sbjct: 6 LDVNIIDFPSIPVAMLPHRCR-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T E R D +V +P+N GV E+TGG+YAVA DD + + Sbjct: 65 TAPEAFRFDICGSVSEP--IPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRHW 122 Query: 118 LQDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAV 152 L S +M P Y N G + + +YV + Sbjct: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPL 159 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 7/155 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 + + + +A G + + + + W + P + YD+P+E Sbjct: 158 DVTVIEMPAIPLAVMPHRGNPAR-LSHTLQAFIAWRKRNGLSPSHSRTFNLVYDDPNEVT 216 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + R D + LP + EG+ I G+YA A + D + + + L Sbjct: 217 DDDYRFDLACEI--QGELPADFEGMESRTIPAGRYARARLQGSDDALERLVHSLYAEWLP 274 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S Y++ P + + ++ ++Y+ + Sbjct: 275 SSGYDLADFPLLFERVRFFPDVSEHEMITDVYLPL 309 >UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FQG5_METHJ Length = 279 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 12/145 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD--SKNI----VPKEWVAVYYDNP 55 +K E V G +E+ + K L + + + + ++ +Y+D Sbjct: 127 EPTLKDIESLRVLSIRDKGTYEEVIPKLIGTLCQYFSSPQRGLEQVSITGPFMTIYHD-G 185 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + ++ D V VP LP+ G+ + + GG++A A+ + D + W + + Sbjct: 186 EYRESD---ADVEVAVPVTGRLPDQIPGITIRTMPGGRFASAIHKGPYQDAHESWGKLY- 241 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAE 140 YE PC + YLN+ + Sbjct: 242 EWTAKQGYEPK-APCRDNYLNDPDD 265 >UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=C6PVM8_9CLOT Length = 277 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 15/153 (9%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGF----EQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 I++ + V +G + + + K + E+ + ++ + + YD+P T Sbjct: 136 IQELDDFVVIYERYIGNYIE-LGKNWYDFTEKYKDYFKEDTLLIERF----YDDPSITSL 190 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++ D +TV +L +T I GG++A+ + D + FN L D Sbjct: 191 DQCLYDICMTVDKNCSLD------NVTTIQGGKFALCRFDGLIQDIFAAFQGVFNIWLPD 244 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 S YEM + ++Y E + +++ + ++ Sbjct: 245 SGYEMDERYGLDIYRAIDWESMHVVMDLCIPIK 277 >UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK Length = 288 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 7/154 (4%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62 + ++ + V GP T+ +L + + W+ + ++ Sbjct: 135 VRLIEQPAQQVLALRHRGP-AATIPHTHRRLRWLIGE--LPGTVWLGMCREDAG--DPGS 189 Query: 63 LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122 C + +I G YA + + L S Sbjct: 190 GLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAAFNALYARWLPASG 249 Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 YE +P E YLN+ ++ ++ V V+P Sbjct: 250 YEPDDRPALEHYLNSPRNAAPAELRTDLLVPVRP 283 Score = 38.0 bits (87), Expect = 0.099, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM-WVDSKNIVPKEWVAV--YYDNPDET 58 + E A L GP+ + + F L W+ + P + A+ Y ++P Sbjct: 210 DIERIDIPAGLYACHRLAGPYTR-INAAFNALYARWLPASGYEPDDRPALEHYLNSPRNA 268 Query: 59 PAEKLRCDTVVTVPGYFTLP 78 +LR D +V V P Sbjct: 269 APAELRTDLLVPVRPTPATP 288 >UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP Length = 280 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 59/158 (37%), Gaps = 12/158 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56 + E+ + + + + G + + ++ + L+ ++ + + ++ + +D+P+ Sbjct: 130 LEVEVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQALSEDTRFIGLSFDDPN 189 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T ++ R +V + L + G+YAV + + + Sbjct: 190 VTHPDQCRFYACASVGKEIIPSGMFGTIRLQK---GKYAVYTLKGSYAGLQELYNTINID 246 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153 Y FE Y++ ED + ++Y+ ++ Sbjct: 247 F----NYTKRHGMAFEEYVSYSEEDDDTQVTKIYIPIK 280 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 98.4 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 8/158 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPA 60 +K VA G +E + F +L+ W K I + + V +D P TP Sbjct: 149 VTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRNDCFLLGVGHDAPTITPK 208 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-DFAKPWYQFFNSLLQ 119 E LR D + V F + + ++ GGQ+A + + + + + Sbjct: 209 ELLRFDCCIEVDQPF---HSEGKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQH 265 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155 + E + P E+Y Y ++YV ++ K Sbjct: 266 NKNIEFVGLPVVEIYRTTTINPSYKLNQTDIYVPIRVK 303 >UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=C4IM74_CLOBU Length = 277 Score = 98.1 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 11/154 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--YYDNPDETP 59 I+ + V +G + + ++K +E+ K + + V + +D+P T Sbjct: 133 KISIEIINDQFVIYERRIGNYNELIEK-WEEFTD--KYKKYIDENTVFLERTFDDPSITS 189 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A+K D +TV + I GG++AV + + + F Sbjct: 190 ADKCIYDICMTVDKNCDVENTC------VIPGGKFAVYHYKGFPEQIYTAYQNMFQVWFP 243 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + + F++Y + Y ++++ + ++ Sbjct: 244 VVKKRIDNRYGFDIYNKIDCDSMYMELDICIPIK 277 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 9/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSK--NIVPKEWVAVYYDNPDE 57 +IK+ + + ++QL+ + N +V++ DNP Sbjct: 222 EAKIKRINTLKAVCIEVGDTFRDKYAYTTIWKQLLHYKAVHLQNGPGNRFVSISQDNPWV 281 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E+ R V V G + ++L EI GG YAV + D + + +N Sbjct: 282 TPMEQRRFYIGVLVEG---RANSEGKLLLREIPGGMYAVFRYKGSYSDLPEFYKTIYNQW 338 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S Y FEVYLN E ++ E+Y+ + Sbjct: 339 FPYSMYHQKRPLTFEVYLNAPDETPVEELLTEIYIPI 375 >UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BIU8_TERTT Length = 313 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 6/150 (4%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLR 64 I + R +A G +++++ +++L +W + + A+ + NP P + R Sbjct: 166 ICEVPSRLMAYIRHHG-YDRSIAHTWQKLDLWRFENGLHTQGQFALLHSNPCLVPLKDCR 224 Query: 65 CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYE 124 V + P + + + GG +A V +F + + S Sbjct: 225 YVACVEI---HKTPLQRSVINVLRLPGGIHARFHLAGVYGEFIPYLSRILQEWVPHSGLR 281 Query: 125 MLPKPCFEVYLNNGAEDGYW--DIEMYVAV 152 + P + Y N D D+E+Y+ + Sbjct: 282 VRTTPIWVAYNKNQFTDSQHEFDLELYIPI 311 >UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE Length = 297 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 12/160 (7%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQ-----LMMWVDSKNIVP--KEWVAVYYDNP 55 Y I + E V +G ++ FE L + +++P +++ + YD+ Sbjct: 138 YRIVESETIPVLFLSYIGNYDTCSTVAFETYTWDCLYEYAKENSLLPDKEDYWGIAYDDT 197 Query: 56 DETPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 D T EK R + + G T P + + ++ G YAV V + + Sbjct: 198 DITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAVYVHQGDYALLDAFYETIL 257 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L Y + P E YLN+ + ++ E+++ + Sbjct: 258 KQ-LPQF-YSLGETPILEHYLNSPTDTDVKELLTEVWIPI 295 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 10/156 (6%) Query: 6 KQEEKRTVAGFHLVGPWE---QTVKKGFE--QLMMWVDSKNIVP--KEWVAVYYDNPDET 58 K ++ +G ++ + E QL +++ +W+ + D+PD T Sbjct: 136 KTISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLLEFHHKWIGISQDDPDVT 195 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + +R D T+ F P +G I GG Y ++ + N Sbjct: 196 CKDNIRFDLGFTISEKF--PSPPDGFGKQTIPGGNYLQIRYTGDYENLPMIYDWILNQYC 253 Query: 119 QDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAVQ 153 S ++ P +E YLN ++Y+ ++ Sbjct: 254 IVSKLKLKNNPPWECYLNPFEPIPDKRITDIYIPLE 289 >UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales RepID=C7XCD5_9PORP Length = 289 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 18/161 (11%) Query: 1 MN--YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW---VAVYYDNP 55 MN +E+K+ + H G + +LM W +K ++ ++VY Sbjct: 1 MNYTFELKELHATHIVYLHHQGD-MSLIPSSIRKLMQWAGAKGLINGPANKLISVYQH-- 57 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 ++L D +TVP E + ++GG YA+ + D+ W + Sbjct: 58 ---EGKELSVDIGLTVPQEV---EGENEISKGLLSGGLYAIGHFEIGTDEIPAAWSLMY- 110 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD---IEMYVAVQ 153 +L + FE+Y + + D I++ + VQ Sbjct: 111 TLTSKHQCKPCAGKSFEIYQSIPLDQHPQDKCMIDLCIPVQ 151 >UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383DF5 Length = 139 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 9/132 (6%) Query: 26 VKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG 83 + + + + W + ++ P + + Y PD+ P + R D V G G Sbjct: 13 IAETVGRFIAWRKANHLPPSQHATFNILYGGPDQVPPAEFRQDLCVATGGKAV--AFGSG 70 Query: 84 VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY 143 V I GG+ AV D + L S E+ F L E Sbjct: 71 VAAGIIAGGRCAVLRHVGPDDGLEAALTYLYGDWLSQSGEELRDSLPF---LQRFPELAG 127 Query: 144 WD--IEMYVAVQ 153 D +++++ ++ Sbjct: 128 HDSPVDIFLPLR 139 >UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QIW6_9RHIZ Length = 174 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 6/148 (4%) Query: 10 KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDETPAEKLRCDT 67 + G + + K +E+L +D + + +DNP + ++ R D Sbjct: 13 PTRLIYVSATGRYSDVIPKVWERLFRQLDDSGLYESIGRGYGMAHDNPLDVGSKNCRYDA 72 Query: 68 VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML- 126 V + + +T + G YA D + Sbjct: 73 CVEIRSGIE-ERSLPEFGITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQ 131 Query: 127 PKPCFEVYLNNGAEDGYWDI--EMYVAV 152 +P +Y++N D+ ++ V V Sbjct: 132 NRPVVSIYMDNPNNYADQDLRSDICVPV 159 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 N E+ + ++A G Q + + + + W ++ + P + Y +P Sbjct: 132 NVELIEFHTLSIAYLTHKGHPNQ-LHRSIQTFIDWRRARALPPHKSRTFNLLYHDPKRVE 190 Query: 60 AEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 E R D + + + +I G+YA + D + Y FN L Sbjct: 191 PEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQLDQAIYYLFNLWL 250 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153 + S ++ P F ++ + ++Y+A++ Sbjct: 251 EQSGEKLRDFPLFIERVSFFPDVAANKAISDIYLALE 287 >UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BBL2_9BACI Length = 311 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 14/164 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59 + VGP+ + + +E L W S+ ++ + V +NP TP Sbjct: 152 KVRTIELPVCATVNRQSVGPYTEGIPDAWEDLYHWTTSRELMKPDPFTFGVPRNNPYITP 211 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-----DFAKPWYQFF 114 EK R D +PE + GG++ V D + + + + Sbjct: 212 PEKTRYD-CRIAIDQDKIPEGEPAFLFK---GGKHVVYEFDEPVDYSERGRLIECYSELY 267 Query: 115 NSLLQDSAYEMLPKPC--FEVYLNNGAEDGYWDIE-MYVAVQPK 155 + L S Y L P +V G+ I + +A++PK Sbjct: 268 SFWLPRSGYRYLDNPVELVDVKPLKGSLSVECKIRAICLAIEPK 311 >UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI n=2 Tax=Lactobacillus rhamnosus GG RepID=C7TEN0_LACRG Length = 151 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 13/156 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDETPA 60 I+ ++ VA F +GP+ K WV ++ + + + DNP P Sbjct: 5 KVHIEYMKETNVAYFRRMGPYGSENGKLMHSFKQWVKAEGLFEGSTILGIALDNPQNVPD 64 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL--- 117 R D + + + + + +YA+ ++ + +F+ L Sbjct: 65 ANCRYDVCLIINKEH---LKNNRIKQRPLPSIKYAI--FKIPHTEI--AINEFYKKLNQI 117 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + + ++L KP E Y G+ E+ + ++ Sbjct: 118 ICEKQLKVLNKPIIERYKQKLVSLGFC--EILIPIE 151 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 5/154 (3%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPA 60 +++ VA F G +T+ ++ + W + + P+ +++ Sbjct: 145 VALREVAPTRVAIFEHRGD-PETLDATIQRFIAWRKAAGLSPRTNPTFNIWHSERRPPDP 203 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 D V V + +SE V EI GG+ AV + + L Sbjct: 204 ADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTHNLEPAALYLYRDWLPA 263 Query: 121 SAYEMLPKPCF-EVYLNNGAEDGYWDIEMYVAVQ 153 S EM P + + + + E G E+++ ++ Sbjct: 264 SGEEMRDFPIYCQRFFLDAPEQGTA-AELFLPLK 296 >UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5 Length = 307 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 7/155 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFE-QLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 + ++ +RTV + P+E+ + +L+ W + +W+ +D P A Sbjct: 147 SVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAGVEHHQWLGYLWDQPRLASA 206 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 R D V V + + + A V R + + ++ L Sbjct: 207 ADCRYDVAVEVTHGRHC----GEIGVFRFPPMKVAEVVIRGGLALEMRAFGWVRDTWLPA 262 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMY--VAVQ 153 S Y P FE +L G E+ + ++ Sbjct: 263 SGYLPTDLPAFEAWLGLPYAHGAEHFELACQIPIR 297 >UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WAV0_BACSK Length = 119 Score = 87.7 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 30 FEQLMMWVDSKNIVPKEWV-AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88 E W + + + DNP+ TP E+ R D V + F + + + + E Sbjct: 1 MENFKKWAKLNGVFNDSIILGIPRDNPEITPKEECRYDVCVVINKDFNVTKPA---HIGE 57 Query: 89 ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEM 148 +GG+YAV + + ++ W F+ ++ + + +P E Y + ++ E+ Sbjct: 58 FSGGKYAVFLLDHTKEAVSEFWGNIFSE-IERNNLSIREQPIIERYTSQMIDN--HLCEI 114 Query: 149 YVAVQ 153 V +Q Sbjct: 115 LVPIQ 119 >UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFE7_9CAUL Length = 291 Score = 87.7 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVY---YDNPDETP 59 EI + T+ G + + + +++L V S + + +Y +D+P T Sbjct: 137 IEIVAADPLTLTALRNTGAYPE-LNAVYQRLFDLVFS-QLSMEHLAGLYGYQHDDPRHTA 194 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E R + V V G L E+ + + G YA D + +++ Sbjct: 195 PEACRAEVAVDVGGKAELTEDLYHI---VVPSGLYARLRHLGDYDAIQPAMDTLYLAVI- 250 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 D+ Y + +P +L++ E D+ ++++ + Sbjct: 251 DAGYALADQPLHLHFLDDPEEVATADLRCDLFLPL 285 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 22/170 (12%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60 + E+ + V GP T+ + F LM + ++ V + + T A Sbjct: 154 SVEVVELAPLDVLCQRHDGPVG-TIAQTFRTLMTTLRCNQNPQLQQRVGICGRD--ATVA 210 Query: 61 EKLRCDTVVTVPGYFT----------------LPENSEGVILTEITGGQYAVAVARVVGD 104 R + + E GV+ + GG YAV + Sbjct: 211 SGFRYHAGIIAASQTAFSRAIERLDESAQQSCVTEPPPGVVPLRLEGGLYAVHRLVGPYE 270 Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAV 152 + + ++ L S Y +P E+Y + ++ + + Sbjct: 271 LISPTFRALYSGWLPRSGYRRDQRPGLELYRSLPDRGALQPCITDLLIPI 320 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 4/133 (3%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPKEWVAVYYDNPDETPAE 61 E+ + V GP T+ + F LM + +N V + V + +P + Sbjct: 145 VELTEIAPFDVLSLRHDGPVA-TIGQTFRSLMTMLRCDENAVMDQRVGICVRDPAV--KD 201 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + E S+ V + GG YAV + + + L S Sbjct: 202 SFSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLIGPYALISPTFRALYGGWLPQS 261 Query: 122 AYEMLPKPCFEVY 134 Y +P E+Y Sbjct: 262 GYLRDRRPALELY 274 >UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas RepID=B0RPV2_XANCB Length = 319 Score = 84.6 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 53/156 (33%), Gaps = 8/156 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 + ++ E V G ++ + +GF ++ W + ++ + V + + Sbjct: 164 LQVTVQWLEPLEVVVLRQRGAFDD-LDRGFGRIAAWAERAGVIEHLHALIGVPLSDHRDV 222 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 PA++ + + P + + + G +AV + L Sbjct: 223 PAQQHLFECGIAFATAVAPP---APLHVRVLGEGAHAVLRHTGSYAGLEDALDRLLADWL 279 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S + + P +YL++ D+ ++ V V Sbjct: 280 PGSGHALRDAPLHYLYLDDPETVAEADLRADIRVPV 315 >UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKN8_9FIRM Length = 167 Score = 83.8 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 17/155 (10%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAE 61 +I++ + T+A G + K E + +N++ + + DNP +T + Sbjct: 23 KIEEFKDVTIAYMRRTGDYGFKNKILMENFKEHLRKENLLNSNSIILGIALDNPADTDRD 82 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW---YQFFNSLL 118 KLR D + V G E + + + +I G YAV D A W Q L Sbjct: 83 KLRYDVGLIVSG-----EPNTALDIRKIPDGMYAVFELPHTEQDVAAFWSNIEQLVGDLT 137 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 D KP E Y + + E + ++ Sbjct: 138 VDK-----AKPMIERYSAD--KVAKHLCEFCIPLK 165 >UniRef50_Q9K5S9 BH4009 protein n=1 Tax=Bacillus halodurans RepID=Q9K5S9_BACHD Length = 117 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 12/90 (13%) Query: 40 KNIVPKEWV--AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVA 97 ++ + + + D P+ TP EK R D + + L V + G YAV Sbjct: 2 NGLLDDQAIILGISQDPPETTPPEKCRYDACIVISDEQPL---DGSVREGILPAGLYAVY 58 Query: 98 VARVVGDDFAKPWYQFFN-------SLLQD 120 + + + W FF + Sbjct: 59 KVKHTAEAMEQAWGTFFPNSKAVGMKWIPS 88 >UniRef50_A0M275 Effector binding transcriptional activator protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M275_GRAFK Length = 163 Score = 79.6 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%) Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126 V + +P+ G+ EI G+YAV + + +FA+ FN L +S Y++ Sbjct: 76 AATEVSDFKEIPK---GLEKLEIPAGKYAVFIHKGTASEFAETSNYIFNEWLPNSDYDLD 132 Query: 127 PKPCFEVYLNN--GAEDGYWDIEMYVAVQPK 155 +P FEV + G E+ ++++ + K Sbjct: 133 DRPHFEVLGADYKGPENPDSKEDIWIPITAK 163 >UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus pumilus RepID=A8FC61_BACP2 Length = 149 Score = 79.6 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPK----EWVAVYYDNP 55 MNY+I+ + GP+ + + ++ W++ + + V D+P Sbjct: 1 MNYKIEIVSNMKMVYMRNKGPYGSKENVEMMKRFKQWINQHQLNDELKEYGIYGVPQDDP 60 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + EK R D ++ F+ + V + GG+YAV + W Q Sbjct: 61 GKITPEKCRYDLMLMTNRDFSKDQM---VQTRHVEGGKYAVFTVTHTTEKVNLFWSQL-P 116 Query: 116 SLLQDSAYEMLPKPCFEVY 134 ++Q++ M P E Y Sbjct: 117 QMIQNNQLNMRPASIMERY 135 >UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q46A44_METBF Length = 321 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 7/141 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59 M ++K E+ VA G E+ +++ +L W+ K + + + AVYY +P E P Sbjct: 1 MEIKLKIVEEHQVASISHEGLVEE-MEEIIGELAGWIKQKRLKITQPPFAVYYTSPTEVP 59 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 EK++ + + G E V + + + A+ + + + + + Sbjct: 60 PEKMQYEIGIPFQGD---TNGDERVKIKIMPKHKILSAIHKGPYAEIGSLYAEMM-QHII 115 Query: 120 DSAYEMLPKPCFEVYLNNGAE 140 +S YEM+ P E Y+N E Sbjct: 116 ESGYEMIGAPR-EAYINTPRE 135 >UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26725_METTH Length = 173 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 9/156 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59 M K E VA G + + + + ++ WV + + YY+ P+E Sbjct: 21 MEISEKMVEGIRVAYIECRGSY-ERIPEYISEVAGWVLKNGLQMTGRVYGTYYNTPEEVD 79 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+L + V++ G E E V + + + A+ + + Sbjct: 80 EEELLYEIGVSIAGE---AEADERVKIKNLPSHRVIAALHEGPYTEVGPVIHALI-EYAM 135 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 ++ YE+ P EVYLN+ E ++ E+ + V+ Sbjct: 136 ENGYEIT-GPVTEVYLNSPLEVDESELLTEVQIPVK 170 >UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CY04_9CLOT Length = 295 Score = 78.4 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 17/154 (11%) Query: 9 EKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAV-------YYDNPDETPA 60 E+ +AG + Q + + ++Q + + + + ++ Y ++ D T Sbjct: 148 EEIKIAGLRDITSISQNRIPQLWDQFLRFHGDLYELTETAYSICETRQTAYAEDGDVT-- 205 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 VP + LPE + T + G+YAV R + + + + + L Sbjct: 206 --FSVMVGSPVPDFSNLPET---LAQTTLRPGKYAVFTHRGSLEKLLQTYQYIYGTWLPS 260 Query: 121 SAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152 S + + FEVY +D ++++Y+ V Sbjct: 261 SGQRLDDRDDFEVYERKVLAMQDPENEVKLYIPV 294 >UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW30_HALNC Length = 287 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 10/160 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M + VG ++Q V + WV + K+ +V V +D+PD T Sbjct: 129 MPVTHGVLPPLKIISQRFVGSYDQ-VPHYWRVFGAWVTQTGLDTKQGVFVGVTWDDPDVT 187 Query: 59 PAEKLRCDTVVTVPGYFTLPE---NSEGVILTEITGGQYAVAVARVVGDDF-AKPWYQFF 114 P ++R D +P L E S + I GG YA + + + + Sbjct: 188 PKGEIRYDCGF-LPQNPALLEQIPTSSDLTHQTIAGGAYAALAGQGHYHELVPDRYQRLV 246 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152 L S +++ +P E + + W E+ + + Sbjct: 247 CQWLPSSGWQLDLRPALEWFAEAPWRMPEHEWRFEIRLPI 286 >UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LA7_SHEDO Length = 297 Score = 77.3 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + +A GP + + W + + P + Y + P Sbjct: 144 KVTLVDLASIELAVVEHSGPVSNLHG-SLQAFIGWRRAMHTPPLVSRSFNLVYHDVKHVP 202 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A + R D + L G++ ++ G+YA+ + + L Sbjct: 203 ASEYRLDIGAEI--GRPLTAQDVGMVSKQLPKGRYALLAHTGNEASLGEAINDLYGQWLV 260 Query: 120 DSAYEMLPKP 129 +S + P Sbjct: 261 NSGEPLADFP 270 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 7/154 (4%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 ++ + +A G + V K Q + W P+ + + Y++P + P Sbjct: 199 IQVIDFPRTAIAFLTHEGD-PEGVMKTVAQFIQWRKQYGPSPRTSKTYNILYNDPRDVPK 257 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 E+ R D ++ + N V I G+ A ++ + + ++ + Sbjct: 258 EEYRFDVAASIRK--VVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISLN 315 Query: 121 SAYEMLPKPCF-EVYLNNG-AEDGYWDIEMYVAV 152 YE+ P F E + I++Y+ + Sbjct: 316 EDYEIRNAPLFVERVQGFPDVPENETIIDIYLPI 349 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 13/161 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE------WVAVYYDNP 55 +I++ R G + + + K F+ L+ W+ N + ++ + Y NP Sbjct: 132 EIKIEEYPSRECVMITHKGEYLEGM-KTFDILVSWLVENNFYSETSVKSIPFITIPYANP 190 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQF 113 E+ RCD +++ + N G+ I+ G +AV + F Sbjct: 191 LESAGSDYRCDIAISI--NCKVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITNV 248 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152 L ++ +E LP P ++N+ + ++ + V Sbjct: 249 LTEWLPETQWEPLPAPILFEHINSPLFVPETELITKVCIPV 289 >UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMK3_9FLAO Length = 159 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 22/167 (13%) Query: 1 MNYEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAV--YYDN 54 MN ++ Q ++ + G G + + +++ M KN V E++A+ Y D Sbjct: 4 MNPKVIQISEKNLIGMKSTMHHGQFS-NIVTLWKRFMPNRRIIKNAVNNEFIALQEYIDF 62 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 + + V L + ++G+ I G YAV + + + +K + + Sbjct: 63 NNF--EAAFDIWACIEV---TNLDDITDGMETFTIPEGAYAVFLQKGMDA--SKTYQKIM 115 Query: 115 NSLLQDSAYEMLPKPCF----EVYLNNGAEDGYWDIEMYVAVQPKHH 157 L S Y + +P F E Y N + + + YV V+ KH Sbjct: 116 TEWLPTSGYIIDDRPHFQVMGEKYKNGSPDS---EEDFYVPVR-KHQ 158 >UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepID=C5QV75_STAEP Length = 154 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 14/158 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV----PKEWVAVYYDNP 55 M Y+I++ + +V ++G ++ + + W+ + + + + DNP Sbjct: 1 MKYKIEKLDDSSVVYMRMIGTYQSDENFEMMKTFKHWIHTNHYWKYVEKYGVLGIALDNP 60 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + + R D V+ + N + + GG YAV + + Sbjct: 61 LHVQSNQCRYDVVLRIDE----TVNDQTISKRNFIGGIYAVFKISHTKRNIENFFSHL-E 115 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAV 152 ++L ++ M +P E Y+ E+G + EM V + Sbjct: 116 NILNETHLRMRNEPIIERYI---EEEGTDKVCEMLVPI 150 >UniRef50_A3XLX8 Probable transcription regulator, MerR family protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XLX8_9FLAO Length = 161 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126 V V + T+PE G+ I GG YAV +F + + + L S Y++ Sbjct: 74 AAVEVTDFDTVPE---GMQTKTIAGGLYAVFTHVGPVKEFVETSNYIYGTWLPQSGYKLD 130 Query: 127 PKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155 + FE Y G E + E+++ +Q K Sbjct: 131 KRAHFERLGEKYY--GPEHPESEEEIWLPIQLK 161 >UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I8N6_BORPD Length = 291 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 6/131 (4%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 +++ G Q F +L + S +++ + + YD P P Sbjct: 140 VTVRELPPTRFWAVRYEGMSSQKYACWNDFRRLFAHLRS-DLLTGPFFGLTYDTPMFVPT 198 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 +R V VP F + GG+ A+ A D + + L Sbjct: 199 PFMRYYCGVQVPPGFGPKPKDA--FEITLPGGRIAMCEAHCTADGLPALYANLLDQWLPR 256 Query: 121 SAYEMLPKPCF 131 S Y + CF Sbjct: 257 SGYSLRAS-CF 266 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 8/133 (6%) Query: 23 EQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENS 81 Q + +++ ++ E V NP+ V V +P Sbjct: 150 AQGIAALWQRFGPYIGRIPGQQGSETFGVCC-NPE--DDGSFEYIAGVLVNRAAEVP--- 203 Query: 82 EGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAE 140 G+ L + +YAV + + + F L + + P FE Y + Sbjct: 204 AGLTLQRLAAHRYAVFLHEGHISSIHETFNAIFQHWLPTAGVQTAAAPEFERYSEDFDPM 263 Query: 141 DGYWDIEMYVAVQ 153 G +E++V ++ Sbjct: 264 AGTGRVEIWVPLR 276 >UniRef50_Q6MJL0 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJL0_BDEBA Length = 178 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 14/130 (10%) Query: 10 KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVV 69 + VGP+ + V K E++ ++ S+N+ Y D+P +LR Sbjct: 38 PFKIVYVEHVGPYHK-VNKQLERIEKYMTSQNMTCGRTFGEYLDDPQVVEEARLRSKVGC 96 Query: 70 TVPGYFTLPENSEGVILTEITGGQYAVAVAR-----VVGDDFAKPWYQFFNSLLQDSAYE 124 + G P+ EG+ + EI +Y +AV + + L+ + Sbjct: 97 IITGE--PPQLVEGLQVGEIPQRKYVMAVFTGSPGIGPLKVYPRVNDFMLKQNLKQTG-- 152 Query: 125 MLPKPCFEVY 134 E+Y Sbjct: 153 ----AVIEIY 158 >UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA Length = 306 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 21/168 (12%) Query: 2 NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 ++ + + G + G + V K +++L +S ++ + V Sbjct: 140 EVRVETKPAFILKGMRGEITGLFSLDPNFADVVPKLWQRLDAEANSTSLSFGHCLGVV-- 197 Query: 54 NPDET----PAEKLRCDTVVTVPGYFTLPE----NSEGVILTEITGGQYAVAVARVVGDD 105 D T L + + +P SE + + + YA + D Sbjct: 198 --DVTKVAFDGSNLFYWAGIELRSDIAMPALPSVVSEQLAILNVPKQTYAAVKHKGPIDR 255 Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYW-DIEMYVAV 152 + F L S Y + EVY ++ D ++E +V + Sbjct: 256 LPQTLEWFILHWLPTSGYRGVDGYELEVYPDDYQADAAHAEMEYWVPI 303 >UniRef50_A5FHW5 Transcription activator, effector binding n=2 Tax=Flavobacteriaceae RepID=A5FHW5_FLAJ1 Length = 160 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 18/166 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK---------NIVPKEWVAVY 51 M I+ ++ + G H+ + + K FE ++ S+ N+ E + Sbjct: 1 MEARIETLSEKKLIGKHIEMSFIEN--KTFELWSSFMPSRKNIKNTIDDNLYSLEVYTLD 58 Query: 52 Y-DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110 + DN D P++ + V V T+PEN E +I + G YAV V + K + Sbjct: 59 HFDNFD--PSKTFQKWAAVEVQNLDTIPENLETLI---VPDGLYAVFVHYGPASEAHKTY 113 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155 + F L +S Y + +P F V +D + E+++ ++ + Sbjct: 114 HPIFTEWLPNSKYTVDNRPHFAVMDHKYKKDDPDSEEEIWIPIKNR 159 >UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bacteria RepID=B0S9N2_LEPBA Length = 158 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 11/93 (11%) Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126 V V N +G EI G Y+V + + + + + F + L +S Y++ Sbjct: 73 AGVEVSAV----TNVDGFNQLEIPSGLYSVFLYKGLPSEAGAFYQNLFMNWLPNSGYQLD 128 Query: 127 PKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155 +P FEV Y N+ + +Y+ ++P+ Sbjct: 129 NRPHFEVMGERYRNDDPSS---EELVYIPIKPR 158 >UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseudomonas aeruginosa RepID=B7V1U1_PSEA8 Length = 270 Score = 71.5 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 16/159 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVG-PWEQTVKKGFEQLMM----WVDSKNIVPKEWVAVYYDNP 55 M+ I + +V G G T+ + +E+ + + P+ + P Sbjct: 120 MHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHD--PEVSYGICAQQP 177 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + + V + +PE G++ ++ +YAV + A+ + ++ Sbjct: 178 N----GEFHYVAGFEVQEGWPVPE---GMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYS 230 Query: 116 SLLQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAV 152 LL + E FE Y G D +++Y+ + Sbjct: 231 HLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPI 269 >UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=Methanomicrobia RepID=A3CSG8_METMJ Length = 286 Score = 71.5 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 28/164 (17%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI------VPKEWVAVYYDNPDET 58 IK G +++T+ + +L +V ++ + + + +D Sbjct: 130 IKDIPTVRALSLRERGIYQETIPRMIRELFTYVCPEDGRQPAARIAGPIMFICHD----- 184 Query: 59 PAEKLR---CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 E+ R D V VP ++ + V + + GG++ + K + + F+ Sbjct: 185 --EEYRETDADIEVAVPITGSVSLDGTAVEVVNLPGGRFLSVLHTGPYPGVGKAYERLFS 242 Query: 116 ----SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L S P E+YLN+ AE ++ E+ V+ Sbjct: 243 YMNEHRLVPSG------PSRELYLNDPAEVPEEELLTEVQSPVK 280 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 71.5 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 12/154 (7%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62 ++ TVA G Q + F QL + + + A +P P Sbjct: 116 VHLETRAPVTVAMLAHSGE-CQRLGDTFYQLESLLRLRGAETSQARAFSI-HPAIDPLHA 173 Query: 63 LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122 + P Y P + EI GG+YAV R D + F + Sbjct: 174 DKHVAASVAPEYAMAP-----LQAGEIAGGRYAVLRHRGPYADLDSVYDWFVQEWFPAAG 228 Query: 123 -YEMLPKPCFEVYLNNGAEDGYWD---IEMYVAV 152 + +P Y + + D +++ + + Sbjct: 229 QHIASDRPVILEYY-DPSSDIPVQQKRVDICIPL 261 >UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YJ67_9FLAO Length = 274 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 16/159 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58 + EI + V + + + ++ +E+ M + + E+ V D P Sbjct: 126 LEPEIVYLKPMQV-YYQSTNTYYNNEEIEVLWEKFME--NKFHDSGTEYFGVIADEPLIK 182 Query: 59 PAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 R D ++ LP I GG+YA + + + + + ++ Sbjct: 183 TEISCRYDACSSMQSENKKLPS-------KIIFGGKYARFIHPGSYETIDETYTKIYSRW 235 Query: 118 LQDSAYEMLPKPC---FEVYLNNGAEDGYWDIEMYVAVQ 153 + S E P +E Y + + + + ++ Sbjct: 236 IFHSELEFSHTPIIEKYERYSEHAENEEEQLTYILLPLK 274 >UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NGL3_ROSCS Length = 156 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 1 MNYEIKQEEKRTVAGF-----HLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYD 53 ++ I+ VA F G + +++GF Q+ W + + + + + Sbjct: 9 LHVTIQDLPPFRVACFFCNLQLATGQYSNQIQQGFRQIKSWALQRGLDLTRQRIIGI--- 65 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 P + D V +P + ++S + GG+YAV + + +F Sbjct: 66 -PHVRDGQLTGYDCCVELPENGVIDDHS--FQMKRAPGGRYAVLLLEKNSAVIGEAIGRF 122 Query: 114 FNSLLQDSAYEMLP-KPCFEVY 134 F + P + +EVY Sbjct: 123 FTEYAPAHHLVVDPQRFSYEVY 144 >UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8 Length = 290 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 33/173 (19%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKK-----GFEQLMMWVDSKNI--VPKEWVAVY-- 51 + EI + + V GF + +++K +E+L ++ + + ++Y Sbjct: 131 LQPEIVTFQPKCVVGFR----YYMSIEKNNSIEMWEKLNAQLEKQKYISMNNNRYSIYET 186 Query: 52 ---------YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV 102 N + T + +PE G+ L EI+GG+YA V + Sbjct: 187 SGTCLQNTFNKNSETT------LFIGIETSDDNNIPE---GMELKEISGGKYAKFVHKGT 237 Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + ++ + +S++++ + E Y GAED IE+Y +Q Sbjct: 238 VKNLISTYHYIWGVWFPNSSFQLDDRDDLECYTEKFLGAEDEESQIEIYFPIQ 290 >UniRef50_A5V1E8 Transcription activator, effector binding n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V1E8_ROSS1 Length = 155 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 59/161 (36%), Gaps = 22/161 (13%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYD 53 ++ I+ + ++ G + ++ GFE + W + P + + + Sbjct: 9 LHVTIRDLPPTMIVYTSVLLQQMKGSYNDQIRDGFENIKDWARQQGYDPSALKVIGI--- 65 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 P+ A+ + + + + P N+E + ++ GG+YA+ + +F Sbjct: 66 -PNINGAQLIGYECALELE---IAPLNTEDIHTKQLPGGRYAILSLEKDSATIGETIRRF 121 Query: 114 FNSLLQDSAYEML-PKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 F + + +P +E+Y ++ V +Q Sbjct: 122 FAEYVPQHQLTVDLRRPNYEIYY-------EHVMDFCVPIQ 155 >UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKC5_ALKOO Length = 149 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 10/156 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYD--NPDE 57 M ++ + G G + + +E K+I K YY + D Sbjct: 1 MEGKLFNIQGFKAVGISYFGDNANGEIPRLWEAFNQ--QYKDIKNKSKSMFYYGICDSDM 58 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 + V V + +PEN + + G+Y V D + + F+ Sbjct: 59 DAQGRFHYTACVEVDHFEDIPEN---MEAKAVPEGRYLVYTYSGDIKDLGEFYGNIFSKW 115 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 L S YEM +P E+Y ++G + ++Y+ V+ Sbjct: 116 LPASEYEMDYRPQLELYDERFMQNG--EFDIYIPVK 149 >UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VB55_9RHOB Length = 157 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 14/160 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPW----EQTVKKGFEQLMMWV-DSKNIVPKEWVAVYYDNPD 56 N I + + + G VG + + K +EQ K+ V + Sbjct: 6 NAAIVESRAKLIIGL--VGDYSLDTRGEIPKLYEQFFAIRDGIKHRVSDVLYGISM---G 60 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 P R + V LPE + + L + G+Y V R + + F Sbjct: 61 AKPDGSFRYGVGIEVEEAEDLPEGACEMHLVD---GEYVVFSQRTPIAELPARFDAVFAE 117 Query: 117 LLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAVQPK 155 L S + FE Y ++ EDG E++V V PK Sbjct: 118 WLPQSDFVQREGAVFECYPDDDSPEDGKMLYEIWVPVAPK 157 >UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P7_HALOH Length = 231 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 12/159 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60 I + + VA + E + +E + W N++ +DNP TP Sbjct: 79 EVRIVELKPVWVASYRA--EAESPEPRAWEVIFKWAKKYNLLQLPGTRFFGFDNPSPTPD 136 Query: 61 EKL-RCDTVVTVP-GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + + + VT+P F +PE + + + +GG YAV D + W Q + + Sbjct: 137 KAVYGYEFWVTIPHKNFNIPE---EMKIRKFSGGLYAVTNTNFREFDVGERWKQLY-KWV 192 Query: 119 QDSAYEMLPKPCFEVYLNNGA---EDGYWDIEMYVAVQP 154 ++S + C E ++ + +++Y ++P Sbjct: 193 KESEFSYREGICLEEHITLTGYNLDINTVQLDLYEPIKP 231 >UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=root RepID=Q187G0_CLOD6 Length = 288 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 11/161 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK---NIVPKEWVAVYYD---- 53 MN I++++ TVAG + +++L V + N+ E V V +D Sbjct: 127 MNIRIQKKKAFTVAGVNQQNINSSICASLWQKLFSKVSHEEMLNLGTGEVVGVCHDILSL 186 Query: 54 -NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWY 111 N D + + V S G+ + EI +YAV + W Sbjct: 187 DNHDVLDSNTINYMAGYIVTD--VDKARSMGLDILEIGETEYAVVELTGSVPECIHNGWK 244 Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + Y KP FE Y + +E+++ V Sbjct: 245 YAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPV 285 >UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQ04_AZOVD Length = 325 Score = 68.4 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 6/126 (4%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDETPA 60 ++ + V G + V+ + + +D + + V + DNP+ TP Sbjct: 172 VRVESFPSQPVLAMRFYGSYA-LVEDNWRRFAECLDRAGFPLADAQAVGIVQDNPEITPN 230 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 + +R D V F + + + ++A R + + Sbjct: 231 DLVRYD-CAIVDAGFDREHPA--LSRLILPAARFACLEHRAPYSHIFPVYRTIGSVWGPR 287 Query: 121 SAYEML 126 S Sbjct: 288 SGECFG 293 >UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR Length = 284 Score = 68.4 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 14/162 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPD 56 M EI + + G + ++ + + + D+ N V E+ +Y Sbjct: 129 MEPEIITQPAIKLVGIANQ--YTDEDLSLPRLWSGFAPYRDTIANRVGDEFFGIYE---S 183 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 AE+ + + EG+I E+ YA + + + S Sbjct: 184 YEEAEEGTTFVYICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLRYIWGS 243 Query: 117 LLQDSAYEMLPKPCFEVYL---NNGAEDGYWDIEMYVAVQPK 155 L SAYE KP FE+Y N+ + + + V+ K Sbjct: 244 WLPKSAYEYEEKPDFELYPAGFNDADPENKLYLNI--PVRKK 283 >UniRef50_A2FCJ7 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2FCJ7_TRIVA Length = 198 Score = 68.4 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGF----EQLMMWVDSKNIVPKEWVAVYYDNPDE 57 + +I+ + +GP+++ K E+L +++ +YYD+P Sbjct: 30 SVKIEHIAPVKIVYTTFIGPYKEAWKPSMQLFNEKLPDDFKPHCPGATKYIGIYYDDPKI 89 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVA 99 T E R V F L +++ G + + I G+ A Sbjct: 90 TKPEDCRSVIGFVVDDDFKLKDDANGKMHVDTIEIGEAACVHF 132 >UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseudomonas entomophila L48 RepID=Q1I6P7_PSEE4 Length = 165 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 8/126 (6%) Query: 30 FEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88 +++ W+ + V + NPD V V G TLPE G Sbjct: 44 WQRFAPWLGRVPGQHGHDSYGVCH-NPDG--QGAFDYLAGVEVTGAATLPE---GFTTLV 97 Query: 89 ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY-WDIE 147 + YAV R + + F L S FE Y +E Sbjct: 98 LAPQHYAVFEHRGSLECIKTTFDAIFTQWLPASGKRQADAAVFERYPAGYDPTAPQALME 157 Query: 148 MYVAVQ 153 +++ ++ Sbjct: 158 IWIPLE 163 >UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7H0_9BACL Length = 301 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 26/171 (15%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLM--MWVD--SKNIVPKEWVAVY 51 M Y I+Q + + GF + G + + +++ M W + P + V Sbjct: 135 MQYRIEQIPAKRILGFAIQTTTEDGQNHKDIPAFWQKYMHEQWGSRVPGKLHPNVELGVC 194 Query: 52 YDNPDETPAEK---LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD---- 104 T ++ R V E EG+ + YA+ G+ Sbjct: 195 ------TALDEDGTFRYIIGFEVDE---TTEVQEGLTEYRVPAQTYAIFTTPPAGEADFS 245 Query: 105 -DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 + W + F S S YE + P FE Y I++Y+ VQP Sbjct: 246 SSIQQTWDEIFTSWFPTSGYEQVAAPDFEWYDERCWPKEGKQIDIYIPVQP 296 >UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=Shewanella frigidimarina RepID=Q07ZY4_SHEFN Length = 301 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 4/133 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59 + +I + +++A G + + + + W + P + Y +P+ + Sbjct: 138 SVDIVSFDAQSLAVMEHHGDPA-LLPQTIARFIEWRRQFALSPTNCRTFNLLYSSPELSA 196 Query: 60 AEKLRCDTVVTVPGYF-TLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + R D V++ L S ++L I G+ A+ + + Sbjct: 197 KTQYRIDIGVSLNAETQALVSESSQIMLKSIPQGRCAMIKYSGDDIGLTAAIDYLYRDWV 256 Query: 119 QDSAYEMLPKPCF 131 + + P F Sbjct: 257 NANDVTLRNYPLF 269 >UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TVN7_9FLAO Length = 165 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 12/110 (10%) Query: 51 YYDNPDETP---AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107 Y D+ TP K V V +P + + +I G++AV + DF Sbjct: 61 YADDFMTTPFTPETKFVKWAAVAVTTENDIP---NQLEVLKIPKGKWAVFPYKGTTRDFG 117 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQ 153 ++ L +S Y++ +P +E YL G + + E+++ ++ Sbjct: 118 VFAQYIYSQWLPNSGYQLDDRPHYEFMPEDYL--GPNNPQSEEEVWIPIK 165 >UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q13JQ4_BURXL Length = 281 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 16/157 (10%) Query: 4 EIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYY---DNPDE 57 + + VAG + +++ + V V Y DN + Sbjct: 133 RFEDGKAFLVAGLNERYTNETCAAIPSQWQRFGDYFGKVPGQVGNVAYGVCYNADDNGNI 192 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 V V + LP + I+ +YAV R + W +N Sbjct: 193 D------YLCGVEVSDFSALP---AELSRLRISPQRYAVFSHREHVSTIRRTWNTIWNQW 243 Query: 118 LQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQ 153 L S + P FE Y G +E+++ ++ Sbjct: 244 LPASGHIPADAPNFERYDAKFDPVSGMGGLEIWLPLK 280 >UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZPC8_9SPHI Length = 159 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126 V V + +P+ G+ + G+YAV + + F + F L SAY + Sbjct: 75 AAVEVSSFENVPK---GMHAFTLPSGKYAVFIHKGPASAFKPTFDYIFGEWLPKSAYTLD 131 Query: 127 PKPCFEV----YLNNGAEDGYWDIEMYVAV 152 +P FE+ Y+ D + E+++ + Sbjct: 132 QRPHFELLPEGYV---PTDPNAEEEVWIPI 158 >UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria RepID=C7RI56_ANAPD Length = 282 Score = 66.5 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 13/159 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV---PKEWVAVYYD---N 54 M+ +I++++ VAG K +++L+ V + + V YD + Sbjct: 127 MDIKIEKKKAFKVAGIKSDVTKSSNFPKVWDRLVEKVPREKFEEFGSGQIFGVGYDYIMD 186 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQF 113 + + E G+ I +YA+ + + W Sbjct: 187 ----EEDSFIYLAGFDLTDEVKAKEL--GLDTLSIPEKEYAIVSLQGPIPKCIHEGWKYI 240 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + Y P FEVY + + +E++V + Sbjct: 241 ISYFFPKEGYRHDESPDFEVYGDGDPNSEDYKMELWVPI 279 >UniRef50_B8FW41 Transcription activator effector binding n=6 Tax=Clostridiales RepID=B8FW41_DESHD Length = 146 Score = 66.5 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 29/164 (17%) Query: 1 MNYEIKQEEKRTVAGF----HLVGPW-EQTVKKGFEQLMM---WVDSKNIVPKEWVAVY- 51 MNYEI ++ V G P +Q + +++ M WV +N + +Y Sbjct: 1 MNYEIVTLPEKIVVGVTARTSHTDPQCQQVIGGLWQKFMGEGIWVSIQNQANPYCLGLYS 60 Query: 52 -YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAKP 109 YD + D V G + + I G YA+ + V D A+ Sbjct: 61 GYD--------ETSYDVTV---GAEVTKNGNPELTEKIIPAGSYALFRIKGDVVKDVAEA 109 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 W + + L FE YL+N E+G +I++Y+A++ Sbjct: 110 WDKIWT--LPLERSFTGD---FEEYLSN--ENGVAEIKIYIALK 146 >UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4Y4_9SPHI Length = 278 Score = 66.1 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 13/112 (11%) Query: 46 EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD 105 ++ + D P R DT +L + + I GG+YA + Sbjct: 174 DFYGIVADEPLIRENLNCRYDTC------SSLQSLTSRLPSKTIGGGKYAQFTHYGRYET 227 Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIE-----MYVAV 152 + Q ++ + + P E Y D +E +++ + Sbjct: 228 IEDTYSQIYSGWILTAGLRFSHTPVIEKY--TRHPDNTDSVEEQITYIWLPL 277 >UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales RepID=C6CRY2_PAESJ Length = 301 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 20/171 (11%) Query: 1 MNYEIKQEEKRTVAGF----HLVGPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAV 50 M Y+I + V G+ G + + +++ + KNI + + Sbjct: 134 MEYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNRVHKESPVELGI 193 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVA-RVVGDDF--- 106 Y+ + ++ + + + EG++ E G +YAV +V + F Sbjct: 194 CYNF--DMGSDSFSYLIGMEAESFDGVE--GEGLVCREFDGAEYAVFTTPKVPREQFSSS 249 Query: 107 -AKPWYQFFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155 W F S YE P FE+Y + E +++Y+ ++ K Sbjct: 250 IQNTWMTVFGEWFPHSGYEHAGTPEFELYDERSNHELSEIQMDIYIPIKKK 300 >UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=Bacteria RepID=D1ARF9_SEBTE Length = 267 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 26/161 (16%) Query: 3 YEIKQEEKRTVAGFHL---VGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD---NPD 56 I + + + + V + + + +E +M D + +++++D +P+ Sbjct: 125 VSITETQPKNILFLRQKMNVSDYGGYLGRLYEIIMK--DKYKTIGAP-LSIHHDKEFDPE 181 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 D + VP + E++GG A + + + + + Sbjct: 182 N-------YDIEIAVPVEDKTEKT------RELSGGLCATVLYKGPYSNLTSVYAKLI-Q 227 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155 ++ Y++ P +E+YL N + E+Y V K Sbjct: 228 WIETEGYKITNAP-YEIYLTNPGTTAPENYMTEIYFPVAKK 267 >UniRef50_Q28T08 Transcription activator effector binding n=1 Tax=Jannaschia sp. CCS1 RepID=Q28T08_JANSC Length = 267 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 14/152 (9%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTV----KKGFEQLMMWVDSKNIVPKEW-VAVYYD-N 54 M + K + + + F ++ +V I P ++VY + Sbjct: 115 MEFTRKTLPAQPYIYVERECAYGPEIADAMGSAFGEIFAFVGQSGITPLSMPMSVYTGMD 174 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 P LR V V + + + G + + D Sbjct: 175 PKI-----LRFRGGVIVSTD-DAAKAEGAIKSDALPAGDVMHVIHKGPYDTMNLTHKAL- 227 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI 146 L+ P +E+Y ++ + D+ Sbjct: 228 WEHLEAQG-TPGTMPTWEIYTDDPGDTAPEDL 258 Score = 39.1 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 8 EEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLR 64 V GP++ T K +E L + E +Y D+P +T E LR Sbjct: 203 LPAGDVMHVIHKGPYDTMNLTHKALWEHLEAQGTPGTMPTWE---IYTDDPGDTAPEDLR 259 Query: 65 CDTVVTV 71 + T+ Sbjct: 260 TEIFCTI 266 >UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI Length = 286 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Query: 83 GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVY----LNNG 138 + + G+YAV R + K + F + LQ + E+ + FEVY L+ Sbjct: 214 ELAKKTLRAGRYAVFTHRGTLGNLYKTYQYIFGTWLQTTREELDDREDFEVYEHEILSFD 273 Query: 139 AEDGYWDIEMYVAVQ 153 D ++++++ ++ Sbjct: 274 DPDN--EVKIFIPIK 286 >UniRef50_C5DA82 Transcription activator effector binding n=1 Tax=Geobacillus sp. WCH70 RepID=C5DA82_GEOSW Length = 160 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 19/166 (11%) Query: 1 MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQL-------MMWVDSKNIVPKEWV 48 M Y++ + + V G + G + K ++++ ++W + + + Sbjct: 1 MKYKVIERDSFQVVGIKREFSLVNGENLVDIPKLWDEVNEDGTVDLLWKLNNGQIKG-VL 59 Query: 49 AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107 V N + + G G++ E+ ++ V D Sbjct: 60 GVCVTNSGTQSKQVMDYWVATEYDGD-----TPNGLLKFEVPASKWVVFEVHGPMPDAMQ 114 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 K W Q F+ L S+YE P EVY + + E+++ V+ Sbjct: 115 KAWNQIFSEWLPSSSYEHAGTPALEVYTDENPLSPDFYSEIWIPVK 160 >UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=uncultured archaeon RepID=D1JG23_9ARCH Length = 332 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 15/157 (9%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM--WVDSKNIVPKEWVAV----YYDNPDET 58 +K + V G +E+ + + +L + + + Y+DN Sbjct: 182 VKDVSSQRVLSRREKGTYEEVIPRLIGELSGRVFGPENQRARVKCTGIPITIYHDN---- 237 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 ++ D V +P + E + + G+ + + D + F + Sbjct: 238 EYKEKDADIEVALPVSGNITVGPEY-EVKILDEGKVVSYIHKGPYQDAGGAYRAVF-EYI 295 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 +++ E+YLN+ E ++ E+ V V+ Sbjct: 296 DKKGLKVVGNYR-ELYLNDPKETPETELLTEIQVPVE 331 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA----VYYDNPDE 57 YE+K ++ V + GP++ + + ++D K + + V +Y ++P E Sbjct: 261 EYEVKILDEGKVVSYIHKGPYQDA-GGAYRAVFEYIDKKGL---KVVGNYRELYLNDPKE 316 Query: 58 TPAEKLRCDTVVTVPG 73 TP +L + V V Sbjct: 317 TPETELLTEIQVPVED 332 >UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio RepID=B5EUU0_VIBFM Length = 299 Score = 65.3 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 13/161 (8%) Query: 3 YEIKQEEKRTVAGF--HLVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDN 54 ++ + V G L G + + V + L + +P++ AV + Sbjct: 140 VRLEYKPSFKVLGLSTRLQGILSDTPDFNEKVPSVWNALDTSIVYLPSIPEQKYAVI--D 197 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENS--EGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 E A+ L + T N + + I +YAV + DF+K Sbjct: 198 TREENADSLLYWAGINCEALSTDELNQHKADLQIITIPEQEYAVLPFKGAAQDFSKSVEW 257 Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + L S ++ + E+Y ++ + G D+E ++ ++ Sbjct: 258 LISEWLPTSGHQGIEGFDLEIYQSSTTQ-GVIDVEYWLPIR 297 >UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11SS0_CYTH3 Length = 163 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 8/96 (8%) Query: 65 CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYE 124 D ++ ++ EG+ E+ G Y V + + + A + + L S YE Sbjct: 69 FDKCASI-EVTSMEAIPEGMEYIELPAGLYVVFLYKGDARNAAAVFQYILGTWLPASPYE 127 Query: 125 MLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPKH 156 + +P FEV Y + + + E+++ V+ K+ Sbjct: 128 LDIRPHFEVLGETYKKDDPDS---EEEIWIPVRDKN 160 >UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YZW0_ANASP Length = 290 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 IK+ VA + P ++ + + ++ ++ + ++ A + +P + Sbjct: 140 EVVIKKVAPIQVASIRQILPDNPSIGQLYGEISEYLAQNGVKAGDYYAGIWHDPGYKDTD 199 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQ-YAVAVARVVGDDFAKPWYQFFNSLLQD 120 + + V+++ G +E + + E+ G + A + + A+ + + ++ Sbjct: 200 -IDAEAVISIEGSIK---GNERIKIYELPGSETTACLIHHGSYETLAQAYATLVS-WIEA 254 Query: 121 SAYEMLPKPCFEVYLNNGAEDG 142 + Y + P EVY+ G E Sbjct: 255 NGYNIT-APNREVYIIGGNEQN 275 >UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQZ2_CLOCL Length = 272 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 12/156 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60 + IK V + P + K +++L + NI A+YYD + Sbjct: 120 DITIKSIPSYKVIAVRDIIPTYEGEGKLWDELCAFAGKNNIKAIGPSYAIYYDTGYK--E 177 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITG-GQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + + V+T+ G V + E+ + AV + + + L Sbjct: 178 SDVDVEVVMTISGDIAETV---RVKVKELEAVDEMAVVFHKGHFHEMTSAYRAL-AIWLS 233 Query: 120 DSAYEMLPKPCFEVYLNNG-AEDGYWD--IEMYVAV 152 + YEM P +Y +E + E+ V Sbjct: 234 ANEYEM-NGPIRAIYHKGPWSEQNPEEYLTEIQAPV 268 >UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax=Methanomicrobia RepID=B8GHG4_METPE Length = 155 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 10/157 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN-IVPKEWVAVYYD---NPDE 57 +I + + V G G + + +L ++ S ++ V + ++ Sbjct: 3 EIQIIEVLPQLVLGMRQKGAYRD-IPAMLGELYIYGISHQSVLTGPPVFICHEGSVEEAM 61 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 E D V P ++ E + + E+ GG+ A + R +D + + F + Sbjct: 62 VANETGDADMEVAFPIEGSI-EGEGPISIYELPGGRMAKVLHRGPYEDCGPTYTRLF-AW 119 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 +++ + P EVYLN+ ++ E++V + Sbjct: 120 IEEQGLAVT-GPVREVYLNDPTLVKPEELMTEIHVPI 155 >UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHR5_HAHCH Length = 278 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 12/156 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDS-KNIVPKEW-VAVYYDNPDET 58 ++K+ T+ G ++ + + + D + V E + P Sbjct: 128 EPQVKELPAFTLIGMEYRSSDVRDSIPMLWGRYLPREDEIRGRVNHEVSYGLCL--P--L 183 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + R V V +PE V + +YAV + + + L Sbjct: 184 EDGEFRYIAGVEVEKGTPVPEGMVSV---TVAAARYAVLTHTGPVAGLNATFRKACSRDL 240 Query: 119 QDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAV 152 +S E + P FE+Y G + +++Y+++ Sbjct: 241 PESGLERVDGPDFELYDRRFMGPDSAESQVDIYLSI 276 >UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4L9_CLOCE Length = 452 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 15/158 (9%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVY-YDNPD--ETPA 60 +K+ E VA F G + F + W++ + V ++ + ++ Y+NP Sbjct: 139 LKEMEPTRVAYFCYYGKQPEH--HAFTVMAQWLNKNGLNVNEQNLRIFGYNNPSPASPDE 196 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVA-VARVVGDDFA----KPWYQFFN 115 E+ + TV + N + V + GG YAV V R D K W + FN Sbjct: 197 EEYGYEVCATVADNIVV--NDDLVKEKVLGGGLYAVTNVRRGQDGDIGGEIIKAWSR-FN 253 Query: 116 SLLQDSAYEMLPKPCFEVYLN-NGAEDGYWDIEMYVAV 152 + L DS Y E +L + + I++Y+ + Sbjct: 254 NWLSDSKYVYGGHQWLEEHLGFDDNANHIGGIDLYMPI 291 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 13/154 (8%) Query: 7 QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPDETPAEKL 63 E A + G + K + W DS+ YYD+ + Sbjct: 306 NVEPMLTATYTATG--KDADVKARDFFFKWADSQGFFNDTKPHRFFAYYDHERIGHNDFF 363 Query: 64 RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ-DSA 122 VTV F+ ++ + L E GG YA+ A+ + W + F L + Sbjct: 364 -YKIHVTVDREFS--TDNPYIKLEEFKGGYYAITKAKYSYNG--WAWGE-FLKWLSKNKE 417 Query: 123 YEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155 +++ FE Y LN D ++ +++ ++ K Sbjct: 418 FDLGNYWFFEEYKLNKPELDMDTEVVLHMPIKQK 451 >UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EC6 Length = 292 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 24/169 (14%) Query: 1 MNYEIKQEEKRTV---AGFHLVGP---WEQTVKKGFEQ---------LMMWVDSKNIVPK 45 MNY I ++ TV A H + TV + + L+ + + Sbjct: 128 MNYRIIEKPAFTVIEKAEVHRLDENDVVSSTVPDVWAKAGADGTIAQLVGMASDREFI-- 185 Query: 46 EWVAVYYDNPDET-PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQY-AVAVARVVG 103 + Y N ET + PE G ++ I + AV Sbjct: 186 --YGICYGNGKETYDEDTFEYSIAAICAEDTVAPE---GFRISHIPARTWLAVECQGTCP 240 Query: 104 DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + + W + S S Y + EVY + + E++V V Sbjct: 241 ETVQQQWREMCASFFPSSGYTPTYEMDIEVYPSGDPSAPDYKFEIWVPV 289 >UniRef50_UPI0000587148 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587148 Length = 202 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 24/139 (17%) Query: 10 KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVV 69 K VA + GP+ + F ++ V + +YYD+P TP +LR Sbjct: 46 KLRVAYLYNTGPY-RNCGLLFGRVNS-VSPH----ARCMGIYYDDPKTTPESELRYMVGT 99 Query: 70 TVPGYFTLPEN-------SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL--LQD 120 + + ++ +G + E+ A+ A F FF Sbjct: 100 ILSEHDDAVDDELQKRCEDDGFRVIEVP----AIVDAIGTDFPFRWMLSVFFAIWRVYPA 155 Query: 121 -----SAYEMLPKPCFEVY 134 + +PCFE+Y Sbjct: 156 LNGKIKKEGLNARPCFEIY 174 >UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=A7GBT6_CLOBL Length = 289 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126 + V + +PE G++ I G+Y V + + + + + + S E+ Sbjct: 204 VGIEVTSFDYIPE---GMVAKVIPQGKYVVFTHKGSIHKLQETYEYIWGTWIPFSKVELD 260 Query: 127 PKPCFEVYLN--NGAEDGYWDIEMYVAVQ 153 + FE+Y GA + +I++Y+ ++ Sbjct: 261 MRDDFELYDEGFKGANNHLSEIDIYIPIK 289 >UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseudomonas fluorescens RepID=Q4K7X3_PSEF5 Length = 162 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 8/132 (6%) Query: 24 QTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSE 82 Q + +++ + + V ++ + NPD V + LPE Sbjct: 35 QDIGLLWQRFVPHIGKVPGQVDRKTYGICC-NPDG--QGGFEYIAGVEISKLDDLPERYR 91 Query: 83 GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAED 141 + + YAV D + + +N+ L S E P FE Y + + Sbjct: 92 WIEVQP---QHYAVFEHGGALQDLPRTFDYIWNTWLPQSGREAADAPEFERYSADFNPQA 148 Query: 142 GYWDIEMYVAVQ 153 G +E+++ ++ Sbjct: 149 GTGVLEIWLPLK 160 >UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K6U1_BACHD Length = 300 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Query: 65 CDTVVTVP-GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAY 123 V + G +P+ G I EI GG YA + + + + S L S Y Sbjct: 204 YMACVEIEAGDVNIPQ---GFIQKEIKGGTYASFHYKGAANQLSALTNYIYGSWLPSSQY 260 Query: 124 EMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155 + EVY EDG +E++ ++ + Sbjct: 261 QSHFGVEIEVYDEREPKEDGEVAVEIWTPIKKR 293 >UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=Bacteria RepID=A9KRP2_CLOPH Length = 292 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 21/159 (13%) Query: 1 MNYEIKQEEKRTVAGFHL---VGPWEQTVKKGFE---------QLMMWVDSKNIVPKEWV 48 MNY+I Q V G + V + +E + + + + P ++ Sbjct: 128 MNYQIVQFPAFKVVGITNRINTSEAFKIVPQIWENAWKDGTMNRFIELLKKTDYRPAGFL 187 Query: 49 AVYYDNPDETPAEKLRCDTVVTVPGYFTLPE-----NSEGVILTEITGGQYAVAVARVV- 102 + D E D ++ + + +PE +G+ + V A Sbjct: 188 GICADGKWGNSEE---MDYILAITNHVDVPECNYVSPPDGMKEFCYPASTWVVFDADGEL 244 Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAED 141 K QF++ L +S YE+ P E Y+ N ++ Sbjct: 245 PSAVQKIHKQFYSEWLPNSGYELADLPVIESYMQNNHQE 283 >UniRef50_C3L2H2 Bacterial transcription activator, effector binding protein n=3 Tax=Clostridium botulinum RepID=C3L2H2_CLOB6 Length = 168 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 81 SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN--NG 138 EG++ I G+Y V + + + + + + S E+ + FE+Y G Sbjct: 94 PEGMVAKVIPQGKYVVFTHKGSVEKLQETYEYICGTWIPFSKVELDMRDDFELYDEGFKG 153 Query: 139 AEDGYWDIEMYVAVQ 153 A + +I++Y+ ++ Sbjct: 154 ANNHLSEIDIYIPIK 168 >UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium RepID=A5N0X9_CLOK5 Length = 275 Score = 62.6 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 29/165 (17%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVY--------- 51 N +K+ E TV + ++ V + P +++Y Sbjct: 123 NIILKEREPLTVLSIRDNIS-MDYIGSLIGKIYENVYKNGLKPIGNIMSIYYLQNEEEDF 181 Query: 52 -YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110 +DN D + + V F+ S + + GG +A + ++ + Sbjct: 182 NHDNADV--------EVCIPVDKEFS----SNEISTRIMEGGLHAYTTFVGPYSEISQAY 229 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAED-GYWDI--EMYVAV 152 ++ + Y++ +P FE Y+ E D E+Y V Sbjct: 230 GAMM-EWVKHNKYKIS-RPPFEKYIKGPEEGCNPQDFVTEVYFPV 272 >UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J103_9FLAO Length = 115 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 10/107 (9%) Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 DN D P + V + +P + + + EI+ G YAV + + A + Sbjct: 14 DNFDFNPNTPFVKWAAIAVSSFDFIPAD---MEILEISEGLYAVFNYKGNQSNAAAFFNL 70 Query: 113 FFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155 + L S +E+ +P FE+ Y NN + + E+++ ++ K Sbjct: 71 IYTEWLPKSDFELDNRPHFEILGTKYKNNAPDS---EEEIWIPIKRK 114 >UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D8X3_9VIBR Length = 295 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 45/162 (27%), Gaps = 17/162 (10%) Query: 3 YEIKQEEKRTVAGFHLVGP----------WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYY 52 I+ + + G GP + Q V + +I P + Sbjct: 138 VRIESKPETQFWGV--YGPIDSIYAANPQFSQQVLDIWGTFTQIALQHSIAPNHFYYGIV 195 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 D P +L P + + + + I YAV F K Sbjct: 196 DTVRVLPNSQLVYWAASDNPAFSQISQ----LEHVTIPAQMYAVITHVGPAATFPKTLEW 251 Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGA-EDGYWDIEMYVAVQ 153 S L S Y L E Y + E +E ++ +Q Sbjct: 252 VLQSWLPSSGYMGLEGFELECYPRDYQLESHEAKMEFWLPIQ 293 >UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=1 Tax=Moritella sp. PE36 RepID=A6FJ46_9GAMM Length = 312 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 88 EITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDI 146 ++ +YAV + F+ + DS Y+ + E+Y +N ED + Sbjct: 243 DVPAQEYAVIPFTGPIKQLEQVLAWLFSHWIPDSNYDSVDGYELEIYPVNYDPEDSSSYM 302 Query: 147 EMYVAVQPK 155 E ++ ++P+ Sbjct: 303 EYWLPIEPR 311 >UniRef50_D1AKN1 Transcription activator effector binding protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKN1_SEBTE Length = 155 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 1 MNYEIKQEEKRTVAG--FHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYY--DNP 55 M IK+ + T+ G VGP + K + + +K E + Y DN Sbjct: 1 MKAVIKELPEITIYGKKTKDVGPKTVGDLPKAWGEFFE--AAKGKFNPEHMNSYGLSDNM 58 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV--VGDDFAKPWYQF 113 T E + Y +PE E + + +YAV + GD+ +K Sbjct: 59 RMT-EELFDYTIGMEKESYTEIPEGFEEIK---LPANKYAVYTFKGKIEGDNISKFIGDI 114 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDG-YWDIEMYVAVQ 153 + + + E +P+ FE Y +D ++++YV ++ Sbjct: 115 YMKWMPEEKLECIPEYSFEYYDERWIDDSDESELDIYVPIK 155 >UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W7J0_UNCMA Length = 153 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 13/155 (8%) Query: 4 EIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 EIK+ + P E + + + ++ ++ P V Y N D T Sbjct: 6 EIKELPVQQALSVRTRSPVENLPNVIGQTYGTIIQYMSELGEQPAGAPFVAYYNMDMTD- 64 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 D + P LP V + I GG+ + + A + L+ + Sbjct: 65 ----LDLEIGFPVNRELP-GKGVVQPSRIPGGRTGTCMYTGPYQEIAPAYDAL-AKLIAE 118 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIE--MYVAVQ 153 E +E+Y N+ + ++ + ++ Sbjct: 119 KGLEPTGVA-YEIYYNSPMDTEPSKLQTLILFPIK 152 >UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSY0_DESHD Length = 291 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 39/173 (22%) Query: 4 EIKQEEKRTVAGFHLVGPWEQT------VKKGFEQLMMWVDS--KNIVPKEWVAVYYDNP 55 +I + + VAG +T +++ +++ I + Sbjct: 135 KIVELPEIKVAGLR-----GETTLRDNRLRELWDRANSLYIQIPNRIPNGRAFGIC---- 185 Query: 56 DETPAEKLRCDTVVTVPGYFTLPEN-----------SEGVILTEITGGQYAVAVARVVGD 104 E +T+ T+ E +E + I GG+YAV R Sbjct: 186 -----EACAENTLYTMNDDILFTEVAGIEVSSFAGLTEPFVQKIIPGGRYAVFTHRGTLG 240 Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVY----LNNGAEDGYWDIEMYVAVQ 153 + + + + + EM + FE+Y L D ++++Y+ ++ Sbjct: 241 MLPQTFDYIWGTWFLTTKEEMDWREDFELYDERFLGYDHPDS--EVDLYIPIR 291 >UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes RepID=C1FU00_CLOBJ Length = 290 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 26/165 (15%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-------QTVKKGFEQ------LMMWVDSKNIVPKEW 47 MNY I++++ + G P E +TV K + + + +P Sbjct: 134 MNYRIEKKDSFRIVGISE--PLETEMEKNFETVPKMWGTAAMNGTIPRLAAMMDGIPMGL 191 Query: 48 VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107 + V + R V G+ + +A+ + Sbjct: 192 LGVS----SCNNLDNWRYYIAVASSQPIE-----NGLEEYIVPSSLWAIFSGKGTAKSMQ 242 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + + L S YE P EVYL ED +++ ++ V Sbjct: 243 ELEKRIITEWLPTSGYEYGNAPDIEVYLKADPEDTEYEV--WIPV 285 >UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K766_BACHD Length = 297 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 21/170 (12%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQ-LMMWVD---SKNIVPKEWVAVY 51 M + + + G+ L G + + + ++ L + + + + Sbjct: 130 MEPKFVTKPAFHIIGYELKTKNADGQNNKDIPEFWQHYLKNKLGCTIPNPLHKHVELGIC 189 Query: 52 YD-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD----- 105 + NP+ + + V PE G++ +YAV ++ Sbjct: 190 TEFNPET---GEFVYVIGMEVEKGTKAPE---GMVYKSFPELEYAVFTTPKANEESFTSS 243 Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 W F S YE FE+Y ++++Y+ V+ + Sbjct: 244 IQSTWNYIFTEWFPQSDYEHNGVVEFELYDERCHGTENIEMDIYIPVKKR 293 >UniRef50_B8GJM5 Transcription activator effector binding n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GJM5_METPE Length = 120 Score = 61.5 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 12/114 (10%) Query: 43 VPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV 102 + ++ + +Y D P K R V V + + I GG + V + Sbjct: 17 LSQKALRLYDDRGLLVPESKDRITGCVAVTDPA--------IEVKTIPGGSHLTLVYQGA 68 Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 + W + F ++ Y + P E+YLN+ A+ D+ E+++ + P Sbjct: 69 YPGLHEAWSRIF-VYQEEKGYRIA-GPGRELYLNDPAQVPEEDLLTELHLPIIP 120 >UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales RepID=C5EUL1_9FIRM Length = 266 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 27/161 (16%) Query: 2 NYEIKQEEKRTVAGFHL---VGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD---NP 55 +K+ ++ +A V + K +E++ V +A+Y+D +P Sbjct: 123 EIVVKEAGEQVLATHRQKMSVEEFGTYYGKIYEKI---AREHLEVNGIVMAIYHDQEFDP 179 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + E +T + G A + + + Sbjct: 180 AFSDIE---LGVGITERDKADF----------ILPGHLCATTIHKGAYSGLPDAYGAI-V 225 Query: 116 SLLQDSAYEMLPKPCFEVYLN---NGAEDGYWDIEMYVAVQ 153 + + + Y+M P +E+YL + W E++ V+ Sbjct: 226 AWINANGYKMDGMP-YEIYLKTHFDKLPPEEWVTEIFFPVR 265 >UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales RepID=C6CRA3_PAESJ Length = 297 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 72 PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCF 131 + E EG E+ G+YA + + W + + L +S YE P F Sbjct: 216 EEVTSFAEVEEGFACLELPSGKYAAFRNGTMPEIGQNAWKYIYGTWLPNSNYERGEGPDF 275 Query: 132 EV--YLNNGAEDGYWDIEMYVAVQ 153 EV LN+ + + +Y+ ++ Sbjct: 276 EVTDVLNSTPQ--KISMTIYIPIR 297 >UniRef50_A3I8G8 Transcriptional regulator, MerR family protein n=3 Tax=Firmicutes RepID=A3I8G8_9BACI Length = 281 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 60/163 (36%), Gaps = 25/163 (15%) Query: 3 YEIKQEEKRTVAGFHL--VGP-WEQTVKKGFEQLMM-WVDSKNIVPKEWVAVYYD---NP 55 ++ + +++T+ G +++ F+ L + + + + +Y+ +P Sbjct: 134 IKLVETKQQTILTRRQLLTGEDYKEGYHHFFQTLYEKIAKEQYTLLGKPMTIYHSAEYDP 193 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 E F +P + GG A +V + ++ + + Sbjct: 194 LGNDTE-------------FAIPIKESVKGTRDFPGGLCAKSVLKGAYNELSAIYANLL- 239 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAE---DGYWDIEMYVAVQPK 155 ++ YE++ P +E+Y+ + + W E+Y ++ K Sbjct: 240 EWVKKEGYELVDSP-YEIYITDPNQEQHTEDWLTEVYFPIKKK 281 >UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=Methanosarcina RepID=Q465L3_METBF Length = 287 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 14/159 (8%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDS------KNIVPKEWVAVYYDNPDET 58 IK+ + V G + T+ K ++ V S + V + + +D Sbjct: 135 IKEIPEMRVISKREKGTFVATIGKLIGEICTSVGSPENQRNRVKVTGPVMFLCHDE---- 190 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +++ D + +P + + + + + V R + Q F+ Sbjct: 191 EYKEIGADIEIALPVSGRISVEDPKMEVKTLPAIRAISVVYRGPYPGVEAGYNQIFSYAR 250 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 +++ + P E+Y N+ E ++ E+ V ++ K Sbjct: 251 ENNLETL--SPDRELYFNSPEEVPEEELMTEIQVPIREK 287 >UniRef50_B5JDT8 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JDT8_9BACT Length = 268 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 E K+ VAG+ + G + V KGF+ L + + + +YYD E + Sbjct: 123 EVEEKELPSMLVAGYRMCGRYSD-VGKGFKVLGRKAGRH--LKGKSMCLYYD--GEYRED 177 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + V E + E++GG + + + ++ + + F + ++ Sbjct: 178 DANFEPCFEVKREVE----DEDLQCRELSGGTALTLLHKGPYERLSESYAKLFAA-VKRG 232 Query: 122 AYEMLPKPCFEVYLNNG 138 +L P EVY Sbjct: 233 GCRVL-CPSREVYHKGP 248 >UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria RepID=A6UD97_SINMW Length = 279 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 16/158 (10%) Query: 4 EIKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMW----VDSKNIVPKEWVAVYYDNPDE 57 ++ +AG + + + +++ + + V + Sbjct: 129 RFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFGNIPGQRG---NTAYGVCTQSDG- 184 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 A + R + LP G + +YA+ V R + A + F + Sbjct: 185 -EAGRFRYMAAAEIRDNEALP---AGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTW 240 Query: 118 LQDSAYEMLPKP-CFEVYLNN-GAEDGYWDIEMYVAVQ 153 +S Y P E Y G +EM+V ++ Sbjct: 241 FPESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLK 278 >UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croceibacter atlanticus HTCC2559 RepID=A3U5E2_9FLAO Length = 165 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 16/165 (9%) Query: 1 MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDN--PDE 57 M I+ + + G H T ++ +++ M K+I+ + +Y P Sbjct: 6 MTPRIETLKPTVLVGMHNTMSIAANTTQQLWQRFMP--KHKSILNRGDAILYSAEVYPSV 63 Query: 58 ------TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWY 111 P + + V V ++PE + +++ G YAV + D K + Sbjct: 64 DYFKSYNPEAEFQKWAAVAVHSSQSIPETMDMLMVQ----GDYAVFTYTGLASDVYKAYQ 119 Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155 ++ L S Y++ +P F + D E+++ +Q K Sbjct: 120 FIYSKWLPASKYKLSNRPHFAKMDSTYNPNDPSSQEELWIPIQLK 164 >UniRef50_A6LWV9 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LWV9_CLOB8 Length = 272 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 11/156 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETP 59 + E+K + V + ++ + ++ P + +Y+D + Sbjct: 122 LKVELKDRKSLIVIS-RRTITSMSNISSVIGKVFEDIFKMDLKPSGPVMTIYHDKQEF-D 179 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E C+ V V +N + E+ GG A + + + ++ Sbjct: 180 VENADCEVCVPVNSRVNAEKNEN---IKELAGGLVASTTFVGPYSRLGEAYAKV-VKWIE 235 Query: 120 DSAYEMLPKPCFEVYLNNG-AEDGYWDI--EMYVAV 152 D+ YE P F++YLN + + E+ + Sbjct: 236 DNGYEYAGAP-FDIYLNGPQSVKSPEEFVTEVCFPI 270 >UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850B59 Length = 159 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 20/164 (12%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51 MNY I +++ V G V G Q + ++++ + I +E+V V Sbjct: 1 MNYRIVEKDAFQVIGVSKVVSTVNGENHQAIPTFWDEVNESGVDERIAKLAGNQEYVGVC 60 Query: 52 --YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108 +D+P+ E+ T E + EI +AV + Sbjct: 61 MDFDHPN----ERFTYFIGAEDIANVTQTE----LEKREIPRNTWAVFESVGPMPHAIQA 112 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 W + ++ + Y+ P FE+YL + E+++ + Sbjct: 113 VWQRIYSEWFPSTGYKHAGGPEFELYLPGDVTQEDYRCEVWIPI 156 >UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=Salinispora RepID=A4XAI8_SALTO Length = 274 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 11/146 (7%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYD--NPDETPA 60 E++ ++ + + +GF ++ + + + VY+D + T Sbjct: 124 EVETVPVASLTLHTSLDAIGADMGRGFGTVVDAIGNAGTEANGKPFVVYHDVIDEQTTGD 183 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 + + VP LP S V E+ GG A V R + + ++ ++ Sbjct: 184 ----IEICIPVPAGTVLP--SGPVRYRELRGGPIASTVHRGPYQEISPAYHVVTG-WIEQ 236 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI 146 P EVYLN+ ++ Sbjct: 237 EGVHPA-GPPREVYLNDPQTVSPAEL 261 >UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX83_SYNWW Length = 152 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 11/147 (7%) Query: 3 YEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59 + +++++ + V Q + K + +M ++ + P V Y N Sbjct: 5 FVVEEKKAQPTISVRTRTAVENLPQVLGKAYGAIMNYLFEIGVQPAGEPYVGYFN---MD 61 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + L + + V ++ + +EI G+ + + + + + Sbjct: 62 MQDLDLECGLPVAQPVV---GNDKLKPSEIPAGKQVSCLYTGPYNQIEPAYNAIM-AWIP 117 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146 + Y C+E YLN+ AE ++ Sbjct: 118 ANGYTPTGV-CYEFYLNDPAETPENEL 143 >UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJ15_CLOCL Length = 290 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 22/164 (13%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGF-----EQLMMWVDSKNIVPKEWV--AV 50 MNY I +E+ T+ G L E+ T+ + E++ + + + +V Sbjct: 134 MNYRIVEEDALTLFGISLTTRREESFETIPDFWNKCEEERITYKIVEAGHGNERTLLKSV 193 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAV--AVARVVGDDFAK 108 YD E ++ + +P S+ + I +AV V D Sbjct: 194 LYD----MDNEMMKYMIGLDMPEEGV----SDEFEVVTIPAKTWAVFPLVLEKPEDSITS 245 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 W + F +S YE+ E + +DG +E +V V Sbjct: 246 IWKRIFTEWFPNSGYELDEGSWQER--CHWRDDGKMIVEAWVPV 287 >UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8P4_GEOSF Length = 221 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%) Query: 73 GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFE 132 +L E + + GG+YAV A + L S+Y + + FE Sbjct: 139 EVSSLEEIPTSMETYLLQGGKYAVFTHHGPASAAAGTFQYILGEWLPKSSYNLDDREHFE 198 Query: 133 V----YLNNGAEDGYWDIEMYVAV 152 V Y D E++V + Sbjct: 199 VLPEGY---NPIDPEAKEEIWVPI 219 >UniRef50_B8I6Y6 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I6Y6_CLOCE Length = 297 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 11/134 (8%) Query: 26 VKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG 83 + + +EQ+ W+ + + D P+ R T Y + Sbjct: 165 INRAYEQIFTWLKENKKFTSDTKICGITMDTPEVQNLSSCRYYACATAESYIHDEHLAYR 224 Query: 84 VILTEITGGQYAVAVARVVGDDFAKPW----YQFFNSLLQDSAYEMLPKPCFEVYLNNGA 139 V T G Y DFA + + + + +P E Y Sbjct: 225 VFQT---SGNYICCKINRCIKDFAACFFKHMDYLYGFYMVSHKFSPDNRPFVEFY--ERM 279 Query: 140 EDGYWDIEMYVAVQ 153 DG I V V+ Sbjct: 280 PDGDIYIHFCVPVK 293 >UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2 Length = 290 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%) Query: 73 GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFE 132 F L N V + I G+YA + + S L +S YE P FE Sbjct: 209 EDFDLELNEGFVKI-VIPEGKYAEFKVSGSHEMVQNTRRYIYGSWLPNSNYERTSGPDFE 267 Query: 133 ---VYLNNGAEDGYWDIEMYVAVQ 153 V +NG D +++Y+ ++ Sbjct: 268 ITDVLHSNGPNDIK--MKIYIPIK 289 >UniRef50_D0NCH1 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCH1_PHYIN Length = 157 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 11/155 (7%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-PKEWVAV-YYDNPDETPAE 61 IK V V P + + ++ + + N+V A+ Y ++ +T E Sbjct: 7 TIKSLAAVRVLSLRSVLPNYRAQGDLWAKIFAFAKTHNVVVAGPTFAINYTEDGRQTDVE 66 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + + +PE + + + AV V + + + FF ++ Sbjct: 67 ---VEVCLPTAKDAYVPEEAPFSVHEVSAVDRGAVMVYVGPCEGYVSAYVTFFG-WIRSE 122 Query: 122 AYEMLPKPCFEVYLNNGAEDGYWD----IEMYVAV 152 P EVY+ + D E+ + V Sbjct: 123 KLTPA-GPSREVYVKRPTGNEEDDQGSVTEIQLPV 156 >UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2W154_NAEGR Length = 174 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 79 ENSEGV--ILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136 N EG+ L+E+ G+YA + + W + L S Y PC+E Y+N Sbjct: 97 PNDEGLKAQLSEMPSGEYAYFRYVGPYEGLSSVWNKLMKEKL--SGYVHTE-PCWEEYIN 153 Query: 137 NGAEDGYWDI--EMYVAVQ 153 + + ++ ++Y ++ Sbjct: 154 DCTQVKKEELITDLYWKLE 172 >UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes RepID=B7HW35_BACC7 Length = 281 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 31/167 (18%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMM-WV-DSKNIVPKEWVAVYYDNPDE 57 M Y I+ + +VG + F+++ W K+ +E + + +++P Sbjct: 128 MEYRIENLD----FELRIVGKSKSVKTSSAFKKIPTLWNNAKKDGFMQELIDMSWEDPKC 183 Query: 58 TPAEK---LRCDTVVT---------VPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD 105 D +T V +P + E + I +AV + Sbjct: 184 KLESLLGVCGKDAAITDEEFSYFMGVRYDGEVPTDMETL---VIPVSTWAVF------PN 234 Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 W + ++ + S YE+ PC E Y E++V V Sbjct: 235 IVDAWKRLYSEWVPTSKYELANLPCIECYY---GPKHKPRHELWVPV 278 >UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357C1 Length = 307 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 17/161 (10%) Query: 3 YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEW-VAV----YYDN 54 +++ ++ +V G+ G + + + + + D KE+ + + YY Sbjct: 152 VTMREAKELSVVGYCSSTKGGFA-GIGRCWRRFHAKKDRISGCTNKEFLIGINDYSYY-- 208 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-FAKPWYQF 113 P + + R V +T P+ G+ + G+ V R +D Sbjct: 209 PCKGLDQVFRYIAGAEVMQEYTAPK---GMQKFTLPAGRCVVFSFRGRNEDSLQPVVEYI 265 Query: 114 FNSLLQDSAYEMLP--KPCFEVYLNNGAEDGYWDIEMYVAV 152 + DS + F Y E G +I+++V V Sbjct: 266 YGEWFPDSTCRFDEDRRYDFARYGEQLDEHGESEIQLWVPV 306 >UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q1C5_9CLOT Length = 278 Score = 58.8 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 17/161 (10%) Query: 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKN-IVPKEWVAVYYD---NPD 56 EIK+ VA GP + + +L+ V+ N + K +AVYYD + + Sbjct: 126 KIEIKEIPVSYVAYIRSKGPCTIEEFAVRYCKLISLVERNNFHIIKNAMAVYYDNCIDFE 185 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAV-AVARVVGDDFAKPWYQFFN 115 E E + + + + +G++ GG AV AV D+ + + + Sbjct: 186 EKEKEDYDIEVCIVISEEREI----DGLVRKF--GGFKAVTAVHYGSYDNMIDSYRKLY- 238 Query: 116 SLLQDSAYEMLPKPCFEVYL---NNGAEDGYWDIEMYVAVQ 153 + ++ YE+ +P + YL N ++ + E+ + ++ Sbjct: 239 KYIYENGYEICGEP-IDNYLVDIMNTVDEENYVTELIIPIR 278 >UniRef50_C5RJ11 Transcriptional regulator, MerR family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJ11_CLOCL Length = 311 Score = 58.4 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 19/162 (11%) Query: 2 NYEIKQEEKRTVAGFHLVG--PWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDE 57 N VA VG P ++ + ++ WV+ ++ + P E Sbjct: 161 NVRFITLPPMRVAYNIAVGISPEDEAIAP----VVKWVEESKLMGITRLLGGNVKPFPSE 216 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 + E +P +P + + GG YAV DD W L Sbjct: 217 SSPE-YGYGMCAAIPESVEIP---AHLKEMRLPGGLYAV---MPSSDDIYGSWQLLMKQL 269 Query: 118 LQDSAYEML-PKPCFEVYLNNGAEDG---YWDIEMYVAVQPK 155 +++ Y+ + CFE ++ N DG + + + V+ + Sbjct: 270 EENNEYKPDSSRLCFEEHIRNDNADGQGSQFILNLLEPVKKR 311 >UniRef50_D2R723 Transcription activator effector binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R723_9PLAN Length = 155 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 13/153 (8%) Query: 6 KQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEK 62 + AG E + + + Q + V + + Sbjct: 8 RDVPAMRWAGIMRRYSMESRCEIPQLWGQFAPHIGQIPGQVGRRSYGIS----VLVSGTD 63 Query: 63 LRCD--TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 D V V +P +G+ I ++AV + + + L Sbjct: 64 CDFDYMAAVEVHSSAEIP---DGMAEFAIPPQKFAVLLHTGHVSELPGFIDAIYRQWLPT 120 Query: 121 SAYEMLPKPCFEVYLNNGA-EDGYWDIEMYVAV 152 S P PC E Y E +E++V + Sbjct: 121 SGLRTAPGPCIECYTEEFCGEKMIGGMEIWVPI 153 >UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCB74 Length = 167 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 15/162 (9%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQL--MMWVDSKNIVPKEWVAVYYDNPDET 58 IK+ EK V G E ++ +E+ + + + K + + Sbjct: 11 KPVIKEIEKIKVIGIKDKVILENNSLPDLWEKFRKVHHIVPNTLPSKRVFGIC----EAI 66 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVIL-----TEITGGQYAVAVARVVGDDFAKPWYQF 113 L ++ + L NS VI I G+YA+ D+ K + Sbjct: 67 SEIHLVSES-MEFNEIIGLEVNSYDVIPNSFVSKTIKEGKYAIFTHTGSLDNLDKTYEYI 125 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + + S E+ + FEVY G + I++Y+ ++ Sbjct: 126 WGTWFLSSKEELDIRDDFEVYDERFLGPSNVNSQIDIYIPIK 167 >UniRef50_B0MJ37 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MJ37_9FIRM Length = 121 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 + +R ++ P ++ G+YAV + + + Sbjct: 28 DDVRFSVMIGSPMEAFSTVPKS-CEKKTLSKGKYAVFTHTGSLQNLVLSYDYIYGVWAMS 86 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153 S +++ + +E+Y E D + +Y+ ++ Sbjct: 87 SKFQLDNRESYEIYDGQVREYTDADNYVLIYIPIK 121 >UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus RepID=Q5WGK8_BACSK Length = 280 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 17/164 (10%) Query: 1 MNYEIKQEEKRTVAG--FHLV---GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51 M+Y+I +++ TV G G + + + + SK + P + + Sbjct: 122 MDYKIVEKDAFTVVGKSIRTTTIGGENNRKIAAFWNESNRNGLSKQLAKNCGPLGLLGIC 181 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110 D +K + + + + +I +A+ + K W Sbjct: 182 IDF------DKQQENLTYLIAAEKNSDQIPVDWETRQIPAATWAIFPVHGAMPNAMPKVW 235 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153 + F+ + YE P EVY+++ E++V V+ Sbjct: 236 ERIFSEWFPATGYEHSGGPEMEVYVSDADPYSKDYYSEIWVPVK 279 >UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL Length = 290 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 25/170 (14%) Query: 2 NYEIKQEEKRTVAGF--------HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--- 50 I + E V G L + Q V + + +L V+ + +++ V Sbjct: 124 EVRIDEREPFLVKGMTSEISGLFSLTQDFAQKVPQLWSRLEGEVEIPDANMLQFIGVVDL 183 Query: 51 ---YYDNPDETPAEKLRCDTVVTVPGYFTLPEN----SEGVILTEITGGQYAVAVARVVG 103 +D + V + ++P+ S+ + + I YAV R Sbjct: 184 TQSCFD------GTNIYYWAGVELHDEISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPI 237 Query: 104 DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAV 152 + F + L +S Y + E+Y ++E +V + Sbjct: 238 EHLPHTLSWFVLNWLPNSGYRGVDGYELEMYPFGYQAHASDAEMEYWVPI 287 >UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CLS6_SHEPW Length = 303 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 9/141 (6%) Query: 22 WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDE-TPAEKLRCDTVVTVPGY----FT 76 + V + +L +D + + V D T + +R + + Sbjct: 165 FSSIVPDTWLRLFDIIDGVLPLAGNMLGVV-DTLSLKTEQQSIRYWAGLELDAEQRQSLQ 223 Query: 77 LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVY-- 134 E + I +YAV ++F++ L +S + L E Y Sbjct: 224 TLLTEEKLCSLTIPSQEYAVVAYSGTVNEFSQLVEWLICDWLPESGFVSLDGYELESYGK 283 Query: 135 LNNGAEDGYWDIEMYVAVQPK 155 + + D +E ++ ++ K Sbjct: 284 ITSTITDLKH-MEYWLPIKAK 303 >UniRef50_C3JZ42 Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3JZ42_PSEFS Length = 170 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 16/158 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT----VKKGFEQLMM-WVDSKNIVPKEWVAVYYDNP 55 + ++ + +AG G + + + K +E D K V V + NP Sbjct: 19 LEPRMEAGKALVIAGV--QGRYSKATVGDIPKLWELFDTCIKDIKKRVGGVTYGVCH-NP 75 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + V VP +P N E + I YAV + + + Sbjct: 76 K---HGEFDYMAGVEVPTKGDVPSNFESIE---IPPLNYAVFPHYGPVQALEQTYERIMF 129 Query: 116 SLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAV 152 L S Y+++ FE Y + G +E+++ V Sbjct: 130 EWLPHSGYKVMGAD-FERYSADFDGRKGTGTVEIWLPV 166 >UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC4194 Length = 277 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 79 ENSEGVILTEITGGQYAVAVARVVG-DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137 E +G+ +I GG +AV ++ K + +F+ L S Y E+Y Sbjct: 206 EGEDGMERHKIPGGTWAVFRCSSPFLENSQKIYRRFYTEWLPHSGYTYGETADIEIY--- 262 Query: 138 GAEDGYWDIEMYVAVQ 153 + D+E++ +++ Sbjct: 263 -PDSNEKDMEIWFSIK 277 >UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aeromonas RepID=A0KIR8_AERHH Length = 155 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 10/156 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I+ + G + + + + V A Sbjct: 5 IRIETGLPMLLGGLRRHHAFAHADFGGQWRDFCALGPLPGQLGEHAYGVI----CGVTAT 60 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + V V LP+ + I YAV + + W Q L S Sbjct: 61 ECEYLCAVEVAALEVLPKT---LGRMRIEPQTYAVFLHQGHVSAMPHTWQQAL-DWLAQS 116 Query: 122 AYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPKH 156 AY+ KP FE Y E G ++E+++AV P+ Sbjct: 117 AYQSAHKPDFERYGAAFDPETGSGEVELWLAVLPRQ 152 >UniRef50_C2AQJ3 Predicted transcriptional regulator n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AQJ3_TSUPA Length = 281 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA--------VYYDN 54 I +R +VGP+ + + + E + V + + VY D+ Sbjct: 204 VRILNLPERRAVVAAVVGPYHEAIPRAHELIGAAVAEQGLTLTRTTGDPATHHFNVYLDD 263 Query: 55 PDETPAEKLRCDTVVTV 71 P P E+LR V V Sbjct: 264 PCAVPPERLRTKVYVPV 280 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 14/153 (9%) Query: 9 EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA-VYYDNPDETPAEKLRCDT 67 RTVA +E+L + + IVP + +D+ E + Sbjct: 133 PARTVASLRGTVADYAAEGTLWERLFPALQEQGIVPGALGGCIEHDD--EFREHDVDESV 190 Query: 68 VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM-- 125 V VP V + + + VA + ++ + + + + Sbjct: 191 FVDVPAG---TTAHAPVRILNLPERRAVVAAVVGPYHEAIPRAHELIGAAVAEQGLTLTR 247 Query: 126 -LPKPC---FEVYLNNGAEDGYWDIE--MYVAV 152 P F VYL++ + +YV V Sbjct: 248 TTGDPATHHFNVYLDDPCAVPPERLRTKVYVPV 280 >UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staphylococcus RepID=B9CPS5_STACP Length = 165 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%) Query: 1 MNYEIKQEEKRTVAG-FHL---VGPWEQTVKKGFEQLMMWVDSKNIVPKE------WVAV 50 M+Y I+ E V G + G + + +E + + ++ K + V Sbjct: 11 MDYRIENIESTKVIGAYRHYKSGGHAQSNIPDFWEDVHTMKLDERLLQKSDNQLNGLLGV 70 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 P E D + V + + +G+ + GG+Y V A+ + Sbjct: 71 CL------PKEDRTMDYAIGV---TSTEDPHDGLETFNLEGGKYLVVEAKGPVPKSVQQT 121 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + L+ E+ P FE+Y + + E+++ +Q Sbjct: 122 MNDIHHELIPRENIEIKQAPFFELYGPGDTQSESYVTEIWMPIQ 165 >UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGS4_AGRT5 Length = 274 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 7/95 (7%) Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A V T + + + YAV D + Y +N L Sbjct: 184 EAGNCTYLAGV---KALTKTPGMDYIE---LPAQSYAVFTHNGHISDLPRTVYTIWNKAL 237 Query: 119 QDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAV 152 ++ + P FE Y E G +E+++ V Sbjct: 238 PEAGLKTADSPDFERYDQRFNPETGRGSVEIWIPV 272 >UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KJN2_AERHH Length = 325 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 4/95 (4%) Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 E L + +LP G+ + YAV + F L Sbjct: 233 ESLPYWAGSVMEEGASLP---AGLARLPVPAQTYAVLSHVGPVSQLGQTLNWFIQHWLPS 289 Query: 121 SAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAVQP 154 S Y L E Y + + +E ++ V P Sbjct: 290 SGYRGLDGFELERYAPDFDGNQPDARMEYWLPVAP 324 >UniRef50_C0EVN7 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EVN7_9FIRM Length = 229 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 87 TEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLP-KPCFEVYLNNGAEDGYWD 145 GG+YA + + + F L + ++ +P F++Y G E+GY + Sbjct: 163 KHFQGGKYAAYHFKGFPQFLFMVYQEIFCRWLSKTGNQLDERRPIFDIYRLVG-ENGYME 221 Query: 146 IEMYVAVQ 153 I++ ++ Sbjct: 222 IDICFPLK 229 >UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSU9_9VIBR Length = 310 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 5/94 (5%) Query: 65 CDTVVTVPGYFTLPEN----SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 V + LP+ S + + YAV K F + L + Sbjct: 213 YWAGVELTDDLLLPQLPSAISSELSTLVVPAQTYAVVKHCGPVVHLPKTLEWFLLNWLPN 272 Query: 121 SAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQ 153 S Y + E Y N D +E ++ V+ Sbjct: 273 SGYRGIDGYELECYPANYNQHDTDAVMEYWIPVE 306 >UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas RepID=B8L7S8_9GAMM Length = 285 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 16/158 (10%) Query: 4 EIKQEEKRTVAGF--HLVGPWEQTVKKGFEQL-MMWVDSKNIVPKEWVAVYYDNPDETPA 60 + VAG + + QL W I V ++ Sbjct: 138 RLLDTPAFQVAGIGMRHTRDSGGAIPGQWAQLNREWPAPAPIS----FGVCCNS-----D 188 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++ D + +P L + +Y VA W+ + L Sbjct: 189 DEGGFDYIAALPAS-ALSTVPAHWQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYLPG 247 Query: 121 SAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAV--QPK 155 + + P E Y E G +E+++ V +P+ Sbjct: 248 TGLSLADAPDLERYDTRFDEHTGNGGVEIWLPVDQRPR 285 >UniRef50_Q1IWD1 Transcriptional regulator, MerR family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IWD1_DEIGD Length = 265 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%) Query: 1 MNYEIKQEEKRTVAGFH--LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58 MNY I+ R + L P + + + +LM+ ++ ++N D+ Sbjct: 112 MNYRIEHLPARQILSIRTRLQPPHYEVIPEALRELMLHAKAQGYPVDAPSFFVHNNDDQG 171 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 L + + V G + + GG+ + D + L Sbjct: 172 EGGSL-VEIGLPVAGEVA---PQGRIEVRTFAGGRALIGRFVGPYDKTGSAYSAVVEEAL 227 >UniRef50_B8FZA0 Transcriptional regulator, MerR family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZA0_DESHD Length = 329 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 31/176 (17%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDETP 59 + I TVA G ++ V + ++ + ++ + ++NP Sbjct: 163 DIRILYLPPMTVASCQSTGDNQEEVVGA--AISTFIKESGLGESKPDFRRIGFNNPASEQ 220 Query: 60 A-EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + L + V++PG +P ++ + GG YA + +F + W + + Sbjct: 221 SGGSLGYEAWVSIPGDMEVP---APLVKKQFLGGLYA--AHMIAFGEFQE-WGRL-WQWV 273 Query: 119 QDSAY------------EMLPKPCFEVYLN------NGAEDGYWDIEMYVAVQPKH 156 D+ + P E LN + + G +++ V ++PK Sbjct: 274 MDNGEYDVDFSPRTDPADPRADPSLEEQLNAIHHLEDASPFGTQ-LDLLVPIKPKQ 328 >UniRef50_B9YCK8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCK8_9FIRM Length = 270 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 19/157 (12%) Query: 3 YEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDET 58 E+ + T+ G + Q ++ F L+ + + + + + +++D+ + + Sbjct: 126 VELTEMPAMTLLSRRLKVRGGDFPQAYQQSFGTLLDKLQKQRLTMDGSPMTLFHDD-EFS 184 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW-YQFFNSL 117 + F +P G V DF + Q Sbjct: 185 EEG---------LDTEFAIPVRETTEETRLFQPGLCLKTVVSGPDADFPAVYARQI--QW 233 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153 + Y FEVY ++ +D E+Y V+ Sbjct: 234 AEAEGYHNADA-LFEVYRSDPRDDPQAFYAEVYYPVR 269 >UniRef50_A2DA81 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2DA81_TRIVA Length = 197 Score = 56.1 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 6/102 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFE----QLMMWVDSKNIVPKEWVAVYYDNPDET 58 + + K V VGP+ Q K + L D K+ +YYD P Sbjct: 31 VKEEYISKFKVVYTTFVGPYSQAY-KMYAVVESALSKANDGKDFSKVPCFGIYYDKPKSV 89 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVA 99 P EKLR V +P + +G + EI G V+ Sbjct: 90 PDEKLRSVVGKIVEDNVEIPNSDDGSIKSEEIELGDVVVSHF 131 >UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID=Q9K6U2_BACHD Length = 160 Score = 56.1 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 16/161 (9%) Query: 3 YEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 + I ++ +R + G L GP+ + +E V + + ++ + D Sbjct: 9 FTIVEQNERKMIGLKLEGPYTRMNEIGMLWETFNQRVSEIDHLVQDDLSFGIVQDR---- 64 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 V V + +PE +I + +YAV + D F++ S L Sbjct: 65 -ERDFTYYAAVEVSSFTKVPEGMATII---LPACRYAVFTHKGPQDKFSETVVAALKS-L 119 Query: 119 QDSAYEML-PKPCFEVY--LNNGAEDGYWDIEMYVAVQPKH 156 ++S YE E Y E + ++Y ++ Sbjct: 120 KESGYEKDSDNYWLEGYDDHRFSPELDNSECDIYFPLKANQ 160 >UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT Length = 290 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 35/174 (20%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGF---------EQLMMWVD---SKNIV 43 MNY I+++E +V G + G + + + + E+++ D ++ Sbjct: 128 MNYRIEEKESFSVFGIDTILSKVDGECYKRIPEFWLKSIEDGTVERILKAADDGKQNMML 187 Query: 44 PKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVAR--- 100 ++N +P EG + +I +A+ Sbjct: 188 NAAMYG--HENDGT-----YHYMLCHRIPQKGI----PEGFVQLDIPKLTWAIFPTEEHT 236 Query: 101 --VVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + W + + S Y+ P FE+Y G D + +E+++ V Sbjct: 237 EDKTSEKVQAIWERIYPEWFPSSGYQHADAPEFEMYYKVG--DNKYIVEIWIPV 288 >UniRef50_Q054R8 Putative uncharacterized protein n=3 Tax=Leptospira RepID=Q054R8_LEPBL Length = 181 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 11/141 (7%) Query: 3 YEIKQE--EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 I++E V +G + + V FE L + K I + ++Y DNP++ P Sbjct: 28 VRIREEVKGPFYVLSHERIGDY-RNVGLTFEVLQKELPKKGIRDFKLFSIYLDNPNDVPK 86 Query: 61 EKLRCDTVVTVPGYF-TLPEN-SEGVILTEITGGQYAVAVARVVG-----DDFAKPWYQF 113 EKLRC+ +PE S + I +Y A + K + + Sbjct: 87 EKLRCEVGALFAEPLSKVPEGLSLDLKTRTIPSRKYIFAEFPLKNFLSIFLGIYKVYPKL 146 Query: 114 FNSLLQDSAYEMLPKPCFEVY 134 F ++ + + E+Y Sbjct: 147 FRVC-EERGCNLKGRASMEIY 166 >UniRef50_D1AJG5 Transcription activator effector binding protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AJG5_SEBTE Length = 153 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 20/162 (12%) Query: 1 MNYEIKQEEKRTVAGF--HLVGPWEQT---VKKGFEQLMM---WVDSKNIVPKEWVAVYY 52 M YEI + +T+AG Q + K +E+ + ++N + VY Sbjct: 1 MKYEIVEIPTKTMAGISIRTTNENMQAVNDIGKLWEEFWNKNIFSFTENKKNNKMYGVYT 60 Query: 53 D-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA-KPW 110 + D T V N++ + + +YA R D+ A K W Sbjct: 61 NYEGDFTKPYD--FYACCEVSSEG---NNNDEFSVISVPESKYAKFSLRGNYDEAAEKLW 115 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + + L Y FEVY N+G + +E+YVAV Sbjct: 116 NTIWETKLDRK-YTYD----FEVYHNDGNDPENLLLEIYVAV 152 >UniRef50_B2TR03 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=B2TR03_CLOBB Length = 151 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 22/162 (13%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM---WVDSKNIVPKEWVAVYY 52 MNYE+ +++ V G + + ++ L + KN + + +Y Sbjct: 1 MNYEVVNLKEKKVVGVTARTKNCDDNMTEIIGSLWQNLYEGGVYNTIKNKSNDKAIGIYS 60 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVV-GDDFAKPW 110 D + + VTV + EN E I+ I G+YA + W Sbjct: 61 DY-----ESDVNSEYSVTVGCEVSDAENIGEDTIVKVIPAGKYAKFIVHGQVQQAVNNFW 115 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + +N L + Y FE Y N E+ +I +Y++V Sbjct: 116 QELWNMKLNRN-YRCD----FEEYQNCDMENA--EIHIYISV 150 >UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio RepID=A7JZZ4_VIBSE Length = 310 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 21/169 (12%) Query: 2 NYEIKQEEKRTVAGFH--------LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 I+ + +AG+H ++ V + QL ++ + + ++ V Sbjct: 140 EVRIETKPAFVLAGYHEPIYGLFSATPNFQSKVPSLWSQLYS-SENHTHLERNYLGVI-- 196 Query: 54 NPDETPA----EKLRCDTVV---TVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF 106 D T A ++L + +++ L + YAV + Sbjct: 197 --DVTKAYSSNQQLEYWAGYEYNSASRTSIYKGSTQEPDLLVVPEQTYAVITHIGKASNL 254 Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQP 154 A F L S Y + EVY + E + ++ V+P Sbjct: 255 AATLEWFILHWLPYSNYHGIDGYELEVYPEDYDVESENAQMHYWIPVKP 303 >UniRef50_A6CI29 Bacterial transcription activator family protein n=2 Tax=Bacillus RepID=A6CI29_9BACI Length = 157 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 13/159 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGP---WEQTVKKGFEQLMMWVDS-KNIVPKEW-VAVYYDNP 55 M ++ + + GF ++ P + + +L K++V + V+ Sbjct: 6 MKIKMIDMQDIQLVGFRVLCPGDQYINEIPVAAYRLENHTHEIKHLVNPRTQIGVFI-AG 64 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T E V + +PE G++ + +YAV + V K + N Sbjct: 65 ECTDEED-GYWICKEVSKFEGIPE---GMVTLTVPPRRYAVYHYQGVNSHIRKAYEDLHN 120 Query: 116 SLLQDSAY-EMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + + + + C E+Y + + G +E+ ++ Sbjct: 121 -WIDERNFSRLTGTWCLEIYH-DWKDKGRLSVELLDPIK 157 >UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax=Chlorobiaceae RepID=B3QQQ3_CHLP8 Length = 158 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 9 EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRCDT 67 A +GP+ + ++ + LM W+ ++ + E +Y D+P ETP EKLR Sbjct: 93 PSGKAATCLYIGPYSE-IEPAYSALMKWIAENSLEMNGEAYEIYLDDPFETPPEKLRTQI 151 Query: 68 VVTVPGY 74 + + Sbjct: 152 HLLLRED 158 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 13/147 (8%) Query: 4 EIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETP 59 E+K+ V GF ++ ++S+ P A YYD Sbjct: 10 ELKELAPVPAIVIRTRVAVSEIGPLFDSGFREIRQVLESQGKQPSAPSFARYYD----MS 65 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 L + V G + S V+ G+ A + + + + Sbjct: 66 EGSLDVEFGYPVDGNVQV---SGRVVSASTPSGKAATCLYIGPYSEIEPAYSALM-KWIA 121 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146 +++ EM + +E+YL++ E + Sbjct: 122 ENSLEMNGEA-YEIYLDDPFETPPEKL 147 >UniRef50_Q0W824 Putative transcription regulator (MerR family) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W824_UNCMA Length = 287 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 40/172 (23%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVK----KGFEQLMMWVDSKN----------IVPKEWVAV 50 IK+ + V G +Q + +Q+ + + + E + Sbjct: 131 IKEIPEVRVISKRGTGAPQQVIPGLIGAVMQQIFSPANQRGNVNICGPITLLFNGETL-- 188 Query: 51 YYDNPDETPAE----KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF 106 +TP E L + V + G ++ G + + GG+ V + Sbjct: 189 -----TKTPEEWGIAHLEWEIAVPIVGRISVEP---GFEVKALPGGRMVTIVYTGPYHEV 240 Query: 107 AKPW----YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + + L + C E+YLNN E + E+ + V Sbjct: 241 GGAYTKVIDYIGSHGLTVNGL------CREMYLNNPQEVPESKLMTEIQMPV 286 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAE 61 +E+K + GP+ + V + +++ ++ S + V +Y +NP E P Sbjct: 218 FEVKALPGGRMVTIVYTGPYHE-VGGAYTKVIDYIGSHGLTVNGLCREMYLNNPQEVPES 276 Query: 62 KLRCDTVVTV 71 KL + + V Sbjct: 277 KLMTEIQMPV 286 >UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EE80 Length = 285 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 31/168 (18%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQL-MMWVDSK--NIVPKEWVAVYYDNPDE 57 MNY I++ + +V GF + + ++ +E++ +W D+ I K W +++P Sbjct: 128 MNYRIEEMKAFSVVGFKK----QVSTQRAYEEVPFLWKDAHAEGIFDKLWNYRAHEHP-- 181 Query: 58 TPAEKLRCDTVVTVPGYFTLPE-------------NSEGVILTEITGGQYAVAVARVVGD 104 +R V G + E E ++L +AV Sbjct: 182 -----IRGILGVCADGDYGKNEYFDYIMSVVSTHNPPEPMVLRHFPAAAWAVFELEGDPK 236 Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 A+ W + + + AY++ P P E YL ++ E+++ V Sbjct: 237 GIAEMWKRLYTEWIPSHAYDLAPLPAIECYL--PPDEYKN--ELWIPV 280 >UniRef50_B9QWG5 Bacterial transcription activator, effector binding domain, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QWG5_9RHOB Length = 133 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 23 EQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENS 81 T+ K F+ + ++ I + +AVYY E + +V + Sbjct: 7 GTTMGKIFQSVWAFIQKNRIETSGKVLAVYY----TYNPETMTFRAGFSVSPDAAN-KGE 61 Query: 82 EGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAED 141 + G+ + + + + + + + P +EVYLN+ A Sbjct: 62 APIQFDRTPAGKVVYFQHKGAYSTLRDSYGEMMS-WM-EKERLTMGAPAWEVYLNDPATT 119 Query: 142 GYWDI--EMYVAV 152 + ++YV++ Sbjct: 120 PEDALLTDVYVSL 132 Score = 44.9 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 9 EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRCDT 67 V F G + T++ + ++M W++ + + + VY ++P TP + L D Sbjct: 70 PAGKVVYFQHKGAYS-TLRDSYGEMMSWMEKERLTMGAPAWEVYLNDPATTPEDALLTDV 128 Query: 68 VVTV 71 V++ Sbjct: 129 YVSL 132 >UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae RepID=B1HRP5_LYSSC Length = 287 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 17/165 (10%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVA 49 M Y+I +++K V G G + + ++++ + + Sbjct: 128 MKYKIVEKDKFQVVGVKRTYNCQDGENTREIPLFWQEINESGFDHQLYQLNNGNINGVLG 187 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108 V P+ ++ D + + + E ++ E+ ++ V D Sbjct: 188 VCV--PNTNQGQQGFIDYWI---ATNHVGDVGEDLLTMEVPASKWVVFEVHGPMPDAMQN 242 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 W Q ++ + YE EVY A E+++ ++ Sbjct: 243 TWKQIYSEWFPSNPYEPAGTAELEVYPEEDAYSPDSYSEIWIPIK 287 >UniRef50_A9KIF5 Transcriptional regulator, MerR family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIF5_CLOPH Length = 306 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 21/163 (12%) Query: 2 NYEIKQEEKRTVAG-FHL-VGPWEQTVKKG--FEQLMMWVDSKNIVPKEWVAVYYDNPDE 57 N VA + V P E+ + + + + + NP Sbjct: 155 NLRFITLPPMRVAYNIAVSVSPEEEAMIPVIDWLKSANLAGTARLFGGNM------NPMP 208 Query: 58 TPAEK-LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 + K ++P +P+N + + GG YA+ DD W Sbjct: 209 SGEGKPYGYGMCASIPDEIAVPDN---LKEMRLPGGLYAMLE---SSDDIGGSWKTLMEL 262 Query: 117 LLQDSAYEMLP-KPCFEVYLNNGAEDG---YWDIEMYVAVQPK 155 L + YE K CFE ++ N + DG + + + V+ K Sbjct: 263 LSINDKYESDHSKLCFEEHIRNDSPDGSKNEYFLNLLEPVKIK 305 >UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19 Tax=Listeria RepID=B8DCJ4_LISMH Length = 159 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 33/170 (19%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQ------------LMMWVDSKNIV 43 M EI + T G ++ + + +++ L + I Sbjct: 1 MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGI- 59 Query: 44 PKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV- 102 + V N D + D + + T PE+ E + I ++A+ + Sbjct: 60 ----LGVCQMNGD-------KMDYYIAIESELTPPEDMEKL---TIPASKWAIFKSVGPL 105 Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + K W + Q S Y P EVY + E+++ V Sbjct: 106 PNAIQKVWEYIYGEWFQTSNYTHGNAPELEVYTEGDTTAADYYSEVWIPV 155 >UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGT3_9BACT Length = 318 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 17/137 (12%) Query: 26 VKKGFEQLMMWVDSKNIVPKEWVAVYY---DNPDET------PAEKLRCDTVVTVPGYFT 76 + + + + VYY +NP+ P E + V Sbjct: 187 IPNLWNAFFERASELQNLTE---GVYYGLSENPEAINLARQHPDEAI-YLAAAQVDPDAP 242 Query: 77 LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136 +PE G+ GG +A + D + + +S Y+ P + Sbjct: 243 VPE---GMHSWNSVGGLFAKFEHQGPVDTLGETIAYIYGKWFPESEYKEREGPDINRFGP 299 Query: 137 NG-AEDGYWDIEMYVAV 152 + E++V + Sbjct: 300 RFIPQSENSLFEIFVPI 316 >UniRef50_Q3DSM6 Bacterial transcription activator, effector binding domain superfamily n=8 Tax=Streptococcus agalactiae RepID=Q3DSM6_STRAG Length = 143 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 58/155 (37%), Gaps = 28/155 (18%) Query: 1 MNYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58 ++++I ++ +AG V ++ +++ + + +T Sbjct: 2 LSFQIVEKPAMILAGVTLENVKSNQEGIQQA------------------IGIC-----KT 38 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSL 117 + R D T ++ + +G+ + I YAV + + W + Sbjct: 39 QPD-FRFDYSATYQVETSV-QAPKGLEIIRIPSATYAVISVKGPMPSSLQETWRKIIQGF 96 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 Q++ + P E+Y + +D + +E+++A+ Sbjct: 97 FQENNLKPANSPNLEIYSSQHPQDTDYQMEIWLAI 131 >UniRef50_A8UHS9 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UHS9_9FLAO Length = 338 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 10/131 (7%) Query: 27 KKGFEQLMMWVDSKNIVPKEW-VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVI 85 + F +M ++ K + + VY D + + V LP++S+ + Sbjct: 213 GQNFGAIMQFMGPKGLKQSGMPLTVYND----MSTSNVIMSNGIPVNERIDLPKDSD-IS 267 Query: 86 LTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNG---AEDG 142 + I + K W L ++ E FE+Y + Sbjct: 268 IGFIPKIRVLKTTLTGNYTFLPKAWEATM-KHLAENNLEQSEHKPFEIYTTDPDNYPNPA 326 Query: 143 YWDIEMYVAVQ 153 W E+Y+ ++ Sbjct: 327 DWKTEIYIPLK 337 >UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium botulinum RepID=B2TL55_CLOBB Length = 282 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 20/164 (12%) Query: 1 MNYEIKQEEKRTVAG--FHLV---GPWEQTVKKGFEQLM-----MWVDSKNIVPKEWVAV 50 MNY+I ++E V G + G + V + + M W+ SK + + + Sbjct: 127 MNYKIVEKESFRVVGKQTRITMVDGENFEQVPEFWNNCMKDGSYNWICSK-VGKLGVLGI 185 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 D ++ V +G + I +A+ + D Sbjct: 186 CKDFGK----DEFNYMIGV----EEIKDSIPKGYVSATIPAATWAIFESSGALPDAIQDL 237 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + F L + YE P E+Y + E+++ ++ Sbjct: 238 TRRIFTEWLPSTGYEHACAPELEIYPEGDIYSSDYKCEIWIPIK 281 >UniRef50_Q12WP7 AraC_E_bind-containing bacterial regulation effector protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12WP7_METBU Length = 132 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 15/137 (10%) Query: 26 VKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRC------DTVVTVPGYFTLP 78 + F ++ + NI + + V + + + + +R D +P + Sbjct: 2 LPILFTEISQFAVKNNIEIAGPPIYVTH---ETSKEDIMRANSEGNADLEAVIPVSEKI- 57 Query: 79 ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNG 138 E V E+ GG V +D + + F + + + ++ E YLN+ Sbjct: 58 EGVGDVKCYELPGGNMVKVVHNGPYEDTGPTYQELF-AWIDVNGLKITGLKR-EAYLNDP 115 Query: 139 AEDGYWDI--EMYVAVQ 153 + DI E+YV ++ Sbjct: 116 HDVPPEDILTEIYVPIK 132 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV----YYDNPDE 57 + + + + GP+E T +++L W+D + + + Y ++P + Sbjct: 62 DVKCYELPGGNMVKVVHNGPYEDT-GPTYQELFAWIDVNGL---KITGLKREAYLNDPHD 117 Query: 58 TPAEKLRCDT 67 P E + + Sbjct: 118 VPPEDILTEI 127 >UniRef50_Q188Y0 Putative uncharacterized protein n=6 Tax=Clostridium difficile RepID=Q188Y0_CLOD6 Length = 165 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 26/172 (15%) Query: 1 MNYEIKQEEKRTVAGF-----HLVGPWEQTVKKGFEQLMM---WVDSKNIVPKEWVAVYY 52 MNYEI + ++ V G + G + + +++ M + K + + +Y Sbjct: 1 MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYT 60 Query: 53 D-NPDETPAEKLRCDTVVTVPGYFTLPENSEG----------VILTEITGGQYAVAVARV 101 D D T V +N E +I I G+YA V Sbjct: 61 DYQGDFTSPYS--FVACCEVNSNSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVG 118 Query: 102 VGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + W++F+ ++ FE Y N + +I +Y+ ++ Sbjct: 119 GQKEVGDFWFEFW-----QMDFDRTYISDFEEYQCNTFDTKKQEIHIYIGIK 165 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 174 7e-43 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 171 5e-42 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 169 2e-41 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 163 1e-39 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 163 2e-39 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 162 3e-39 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 161 6e-39 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 160 1e-38 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 159 3e-38 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 158 6e-38 UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria... 158 7e-38 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 156 3e-37 UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r... 155 5e-37 UniRef50_B8DR99 Transcription activator effector binding n=2 Tax... 155 6e-37 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 153 1e-36 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 153 1e-36 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 151 4e-36 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 150 1e-35 UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 149 3e-35 UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax... 149 3e-35 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 149 3e-35 UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D... 147 8e-35 UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=... 147 1e-34 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 147 1e-34 UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 146 2e-34 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 146 2e-34 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 145 4e-34 UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact... 145 4e-34 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 144 7e-34 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 144 8e-34 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 144 1e-33 UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga... 143 2e-33 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 143 2e-33 UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax... 142 3e-33 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 142 4e-33 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 141 8e-33 UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p... 141 9e-33 UniRef50_C5BHP3 Bacterial transcription activator, effector bind... 140 1e-32 UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax... 139 2e-32 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 139 2e-32 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 139 3e-32 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 138 5e-32 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 138 7e-32 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 137 9e-32 UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta... 137 9e-32 UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S... 137 1e-31 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 137 1e-31 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 136 1e-31 UniRef50_A9D6E7 Putative AraC family transcriptional regulator n... 136 2e-31 UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re... 135 4e-31 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 135 4e-31 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 134 7e-31 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 134 7e-31 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 134 1e-30 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 133 1e-30 UniRef50_D1B3I6 Transcription activator effector binding protein... 133 2e-30 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 133 2e-30 UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu... 132 3e-30 UniRef50_C8Q848 Transcription activator effector binding n=1 Tax... 132 3e-30 UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R... 131 6e-30 UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n... 131 9e-30 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 130 1e-29 UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic... 130 2e-29 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 129 3e-29 UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax... 128 5e-29 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 128 6e-29 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 128 6e-29 UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=R... 128 6e-29 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 127 1e-28 UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact... 126 2e-28 UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n... 125 5e-28 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 125 5e-28 UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A... 125 6e-28 UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen... 123 1e-27 UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria... 123 1e-27 UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca... 123 2e-27 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 123 3e-27 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 122 3e-27 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 122 3e-27 UniRef50_C5DA82 Transcription activator effector binding n=1 Tax... 122 5e-27 UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C... 121 5e-27 UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T... 121 7e-27 UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulato... 121 8e-27 UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero... 121 9e-27 UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S... 121 1e-26 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 121 1e-26 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 120 1e-26 UniRef50_O34775 SPBc2 prophage-derived putative transcriptional ... 120 1e-26 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 120 2e-26 UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ... 120 2e-26 UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax... 117 1e-25 UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A... 117 1e-25 UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=... 117 1e-25 UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=... 116 2e-25 UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B... 115 5e-25 UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseud... 114 6e-25 UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=... 114 7e-25 UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseo... 113 1e-24 UniRef50_A6LWY8 Transcription activator, effector binding n=5 Ta... 113 2e-24 UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T... 113 2e-24 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 113 2e-24 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 113 2e-24 UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=r... 112 3e-24 UniRef50_A0M275 Effector binding transcriptional activator prote... 111 6e-24 UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta... 111 7e-24 UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B... 111 9e-24 UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C... 110 1e-23 UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=C... 110 2e-23 UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact... 110 2e-23 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 110 2e-23 UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax... 109 2e-23 UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ... 109 4e-23 UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re... 108 4e-23 UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax... 108 5e-23 UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseud... 108 5e-23 UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ... 108 6e-23 UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI... 108 6e-23 UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=M... 108 7e-23 UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi... 108 7e-23 UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ... 108 8e-23 UniRef50_A6UD97 Transcription activator effector binding n=14 Ta... 108 8e-23 UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 ... 107 1e-22 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 107 1e-22 UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl... 107 1e-22 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 106 2e-22 UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1... 106 2e-22 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 106 2e-22 UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=... 106 2e-22 UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C... 105 4e-22 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 105 5e-22 UniRef50_A9KRS9 Transcription activator effector binding n=1 Tax... 105 5e-22 UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X... 105 5e-22 UniRef50_P96662 Uncharacterized HTH-type transcriptional regulat... 104 7e-22 UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family pr... 104 8e-22 UniRef50_A6M032 Transcription activator, effector binding n=19 T... 104 9e-22 UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ... 104 9e-22 UniRef50_A5FHW5 Transcription activator, effector binding n=2 Ta... 104 9e-22 UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri... 103 1e-21 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 103 2e-21 UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19... 103 2e-21 UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=... 103 3e-21 UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=B... 103 3e-21 UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C... 102 3e-21 UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavoba... 102 5e-21 UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 T... 101 9e-21 UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax... 101 1e-20 UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla ma... 100 1e-20 UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F... 100 1e-20 UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta... 100 1e-20 UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A... 100 1e-20 UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ... 100 2e-20 UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A... 100 2e-20 UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methano... 99 2e-20 UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S... 99 2e-20 UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokd... 99 2e-20 UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseu... 100 3e-20 UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ... 100 3e-20 UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=C... 99 4e-20 UniRef50_C3JZ42 Putative AraC family transcriptional regulator n... 99 4e-20 UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Mag... 99 4e-20 UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio ... 99 4e-20 UniRef50_D2R723 Transcription activator effector binding protein... 99 5e-20 UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch... 99 5e-20 UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytopha... 99 5e-20 UniRef50_A3XLX8 Probable transcription regulator, MerR family pr... 98 5e-20 UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=M... 98 6e-20 UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croce... 98 1e-19 UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=... 97 1e-19 UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp... 97 2e-19 UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methano... 97 2e-19 UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI... 97 2e-19 UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aerom... 97 2e-19 UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bac... 97 3e-19 UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=C... 96 3e-19 UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac... 96 3e-19 UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=... 96 4e-19 UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staph... 95 6e-19 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 95 6e-19 UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Ta... 95 6e-19 UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C... 95 7e-19 UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-bindin... 95 7e-19 UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=M... 95 7e-19 UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhod... 95 7e-19 UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta... 95 8e-19 UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=S... 95 8e-19 UniRef50_B5JGT3 Bacterial transcription activator, effector bind... 95 9e-19 UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID... 95 1e-18 UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=A... 95 1e-18 UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia... 94 1e-18 UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=C... 94 1e-18 UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax... 93 2e-18 UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1... 93 2e-18 UniRef50_A6LWV9 Transcription activator, effector binding n=1 Ta... 93 2e-18 UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WA... 93 3e-18 UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=H... 93 3e-18 UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta... 92 6e-18 UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S... 92 6e-18 UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B... 92 6e-18 UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax... 91 7e-18 UniRef50_A5V1E8 Transcription activator, effector binding n=1 Ta... 91 8e-18 UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A... 91 8e-18 UniRef50_A4BA46 Transcriptional regulator, AraC family protein n... 91 9e-18 UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus p... 91 9e-18 UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax... 91 9e-18 UniRef50_Q3DSM6 Bacterial transcription activator, effector bind... 91 1e-17 UniRef50_D1AKN1 Transcription activator effector binding protein... 90 1e-17 UniRef50_D2NR94 Uncharacterized protein conserved in archaea n=2... 90 2e-17 UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales ... 90 2e-17 UniRef50_B3PD71 Transcriptional regulatory protein n=1 Tax=Cellv... 90 2e-17 UniRef50_D1AJG5 Transcription activator effector binding protein... 90 2e-17 UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC... 90 3e-17 UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=u... 90 3e-17 UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T... 90 3e-17 UniRef50_Q2PJA4 ORF3 n=1 Tax=Enterococcus faecalis RepID=Q2PJA4_... 89 4e-17 UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n... 89 5e-17 UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=C... 89 5e-17 UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n... 88 7e-17 UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=P... 88 7e-17 UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=A... 88 8e-17 UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=... 88 8e-17 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 88 9e-17 UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax... 88 1e-16 UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavoba... 88 1e-16 UniRef50_C6XQS4 Transcription activator effector binding n=1 Tax... 87 1e-16 UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium Re... 87 2e-16 UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collins... 87 2e-16 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 87 2e-16 UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax... 86 2e-16 UniRef50_A3I0M8 Transcriptional regulator, AraC family protein n... 86 2e-16 UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC ... 86 3e-16 UniRef50_A4CQ28 Transcriptional regulator n=1 Tax=Robiginitalea ... 86 4e-16 UniRef50_Q28T08 Transcription activator effector binding n=1 Tax... 86 5e-16 UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kyto... 85 5e-16 UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=A... 85 5e-16 UniRef50_B1L1R5 Transcription activator, effector binding domain... 85 6e-16 UniRef50_Q3AFY4 Putative uncharacterized protein n=1 Tax=Carboxy... 85 7e-16 UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrop... 85 9e-16 UniRef50_B8FW41 Transcription activator effector binding n=6 Tax... 85 9e-16 UniRef50_Q49ZZ7 Putative uncharacterized protein n=1 Tax=Staphyl... 84 1e-15 UniRef50_C9RC23 Transcriptional activator ligand binding domain ... 84 1e-15 UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID... 84 2e-15 UniRef50_A6LX85 Transcription activator, effector binding n=2 Ta... 83 2e-15 Sequences not found previously or not previously below threshold: UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostri... 96 5e-19 UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=B... 93 2e-18 UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=C... 90 2e-17 UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lacto... 90 2e-17 UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. ... 87 2e-16 UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Er... 86 3e-16 UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=C... 86 3e-16 UniRef50_B1HVH6 Putative uncharacterized protein n=5 Tax=Bacteri... 84 1e-15 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 174 bits (442), Expect = 7e-43, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 8/159 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDE 57 M+ I++ + VA VGP+ + T+ + +LM W ++ ++ + V +D+P+ Sbjct: 170 MDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPGVKTLGVSWDDPEV 229 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E R D + + + G E+ GG YAV V F + W + F Sbjct: 230 TPPEHCRYDACIVIAPGVEVD---GGCATQEVGGGLYAVYRRPVACGQFTEAWNELFGQW 286 Query: 118 LQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154 L S + +PCFE+Y + +G WD+ + + V+P Sbjct: 287 LPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPVRP 325 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 171 bits (434), Expect = 5e-42, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPKEWVAVYYDNPDETP 59 M+ I K VA L+GP+ + + + + W+ S + + + YD+P TP Sbjct: 171 MDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTP 230 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A K R D V VP +F S V + GG+YAVA + + A W + Sbjct: 231 ASKCRYDACVEVPAHFV---ASGQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWMP 287 Query: 120 DSAYEMLPKPCFEVY---LNNGAEDGYWDIEMYVAVQP 154 S + +PCFE++ A+ G + ++ + V+ Sbjct: 288 SSGMQCDDRPCFEMFSAATAMDADTGEFCCDICIPVRA 325 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 169 bits (429), Expect = 2e-41, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 MN E+ + VA +GP+ +T+ + +LM W + ++ V +DNP+ Sbjct: 276 MNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEV 335 Query: 58 TPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 TP E R D + + P L G+ + + GG YA + + + F + W + Sbjct: 336 TPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMYTQ 395 Query: 117 LLQDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAVQP 154 L S ++ +P +E+Y + +G WD+ + VAV+P Sbjct: 396 WLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICVAVRP 435 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 163 bits (413), Expect = 1e-39, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 M + E+ V GP++ + L W + +V +A+ +D+PD T Sbjct: 133 MEASVVNLEEMNVVFVRHTGPYKD-CNHAWSTLCGWAGPRGLVNADARILALCHDDPDVT 191 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P +K+R D +TV G + + + I GG+YA + + D K + Q Sbjct: 192 PEDKIRYDACITVAGQTEV---QAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQWA 248 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 + E E+YLN + ++ E+YV ++ Sbjct: 249 PQNGCEADAGASIEIYLNTPDKTAPEELRTEVYVPLK 285 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 5/159 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M I + A VG + +T + + +L MW + P E ++ + D+P T Sbjct: 146 MQATIVELPLMEAAYVRHVGSYLETY-QAWAKLGMWAAQHQLFPPEQSFIGISLDDPAVT 204 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 E+ R D VTVP + + + + GG YA D A + F + L Sbjct: 205 EEEECRYDACVTVPDTLSRADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWL 264 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQPK 155 DS Y+ + C E +N+ A+D +++Y+ ++ + Sbjct: 265 PDSEYDPDDRYCLEFSMNDPAQDPQGKAKVDLYIPIKAR 303 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPKE---WVAVYYDNP 55 +K + TVA +G ++ + FE+LM W + ++ ++VY+D+P Sbjct: 173 QVTVKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDP 232 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T +KLR ++VP + V I GG+YAV + ++ W ++ Sbjct: 233 NITDEQKLRTSVCISVPPNTEVD---GEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWS 289 Query: 116 SLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQP 154 + L +S Y+ + +E+YLNN +G +E+ V V+P Sbjct: 290 AWLPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPVRP 330 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 161 bits (408), Expect = 6e-39, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M E+++ K V G + + +E LM + ++ E V + +D+P T Sbjct: 140 MKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMTGETLMVGIGHDDPAIT 199 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 EK+R D VT G V + I GG+YAV + + + + F L Sbjct: 200 AEEKIRYDACVTFSGDVKPE---GEVGIQTIAGGRYAVFLHKGAYTGLPEIYRNIFAGWL 256 Query: 119 QDSAYEMLPKPCFEVYLNNGA---EDGYWDIEMYVAV 152 S + +PCFEVYLN + E++V V Sbjct: 257 ATSGCTLRDQPCFEVYLNRDPRRTKPENLRTEIWVPV 293 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMW--VDSKNIVPKEWVAVYYDNPDET 58 M+ I++ V GP+E+ +E+L V + + + + YD+PD T Sbjct: 138 MDIRIEEFPPLDVVFIRHTGPYEE-CGIAWEKLCSHPDVAKELGPETQAIGICYDDPDIT 196 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A+K+R D VT P + PE G+ I GG+YAV + + F L Sbjct: 197 EADKIRMDVCVTAPPSLSPPE---GMEKQTIKGGEYAVLTHHGPYEGLHDCYRWLFGEWL 253 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S E P EVY+N+ E D+ E+ V ++ Sbjct: 254 PSSGREANYAPSLEVYVNSPEEVAPQDLITEIRVPLK 290 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDET 58 + ++ + R +A +VG ++ + + F +++ + N++ V VY+D+PD T Sbjct: 132 HVRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMTDCTACVGVYHDDPDVT 191 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 EK R D VTV F + + + + I G+ AV + D + + FF+ L Sbjct: 192 APEKQRADVGVTVDDQF---QPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWL 248 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAV 152 DS +E P +E+Y+N+ ++ W ++ V + Sbjct: 249 PDSGHEPGDFPAYEIYVNDASQLPPDQWLTDICVPL 284 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM-WVDSKNIVPKEW--VAVYYDNPDET 58 +++ A G + T+ + + W+ P ++ +Y ++ + Sbjct: 213 EIQVQTIPSGKCAVLRHQGHY-DTLHEAYRWFFSVWLPDSGHEPGDFPAYEIYVNDASQL 271 Query: 59 PAEKLRCDTVVTVPG 73 P ++ D V + Sbjct: 272 PPDQWLTDICVPLAE 286 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 158 bits (399), Expect = 6e-38, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 EI+ ++ V VGP+ + V K +E+L W K + + E++ + YD+PD TP Sbjct: 145 EVEIRTRDEIQVVFIRHVGPYPK-VTKAWEKLCGWGFGKGLFSEKTEFLGLSYDDPDITP 203 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 K+R D TV P + L I GG+YAV + + + + L Sbjct: 204 EGKIRYDACFTVNEEVETP---PEMGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLP 260 Query: 120 DSAYEMLPK-PCFEVYLNNGAEDGYWD--IEMYVAV 152 S Y++ P FE Y+ + + E+++AV Sbjct: 261 SSGYQLKNTIPSFEKYIKVPPDVPPEEAVTEIWLAV 296 >UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI Length = 157 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 157/157 (100%), Positives = 157/157 (100%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA Sbjct: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD Sbjct: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH Sbjct: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 156 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 9/160 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPD 56 MN +K VA VGP+ +V + +++L+ W ++++ + +++ +DNP Sbjct: 189 MNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWTPDRICLSIAHDNPK 248 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T K R D + +P F V +T+I GG+YA W Q F Sbjct: 249 VTEPAKCRLDAAIVIPQDFKAD---GDVNVTDIAGGKYAAGAWVGDARAIGSAWDQLFGK 305 Query: 117 LLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQP 154 L +S + +PCFE+Y + + E+ + V+P Sbjct: 306 WLPESGDQPDHRPCFELYRGEFHDPKTHNFRCELCLPVRP 345 >UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFH4_YERRU Length = 159 Score = 155 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M + I ++ V +VGP+ +T+ +GF QL W I + W+A+Y+DNP+ TPA Sbjct: 1 MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSWHQHHQIPAQTWLALYWDNPETTPA 60 Query: 61 EKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR D +V F LP N SEGV+L I GG YAV RV+ D+AK W + + L Sbjct: 61 AELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQHLP 120 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 S Y C+EVYLN+G DGY+DI++Y +V+P Sbjct: 121 ASGYVPAEGACYEVYLNDGQADGYFDIDIYQSVEP 155 >UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio RepID=B8DR99_DESVM Length = 156 Score = 155 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 7/158 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 M I++ + VAG ++GP+ ++ K ++ L W+ + + + + +D+P+ T Sbjct: 1 MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQVTSASTMFLGLCHDDPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E++R D +VTVP F E + VI+ I +YAVAV + W + L Sbjct: 61 PPERIRYDAMVTVPEDF---EPDDYVIVRVIRAREYAVAVHKGPYATLPWSWSALYWEWL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 S L P E YLN+ ++ +Y+ + P Sbjct: 118 PVSGRTPLGAPRMEAYLNDPGATPEDELLTHLYLPLAP 155 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 5/156 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59 EI++ G + + V FE++ WV ++ + ++YD+PD TP Sbjct: 139 EVEIRRLPALRGYAVTHTGAYMK-VGDAFERIGAWVGQHGLIGPGAKMIGIFYDDPDTTP 197 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR V I GG+YAV + D + + L+ Sbjct: 198 EAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLR 257 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S E P FE+YLN + D+ E+++ ++ Sbjct: 258 HSGREAADAPPFELYLNTPMDTAPADLRTEIHLPLR 293 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 MN + + V G + + QLM +V S ++ E + + +D+P+ T Sbjct: 126 MNINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLIQPETIMIGISHDDPNIT 185 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + +R D T+ LPE G+ I GG+YA A+ + + ++ + L Sbjct: 186 LVDNIRYDACATIVTEMELPE---GIDRKTILGGKYAKALHKGTYEKLSEAYSYLLLKWL 242 Query: 119 QDSAYEMLPKPCFEVYLNNGA---EDGYWDIEMYVAVQ 153 DS +E+ +PCFEVYLN + E+Y+ ++ Sbjct: 243 PDSGFELRDQPCFEVYLNRDPRRTKPENLKTEIYIPIK 280 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 151 bits (383), Expect = 4e-36, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 6/156 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 I+ E V VGP+ Q + K F+ L W+ N++ V VYYD+P Sbjct: 159 EVVIRHVEPIEVLSVDHVGPYMQ-IGKAFDALFGWLAKHNLLAGQMRMVGVYYDDPGVVA 217 Query: 60 AEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +LR V +P S V + + GG+YAV R D + + + L Sbjct: 218 ESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLYGTWL 277 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S E P FE YLN+ + D+ E+ + + Sbjct: 278 VQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPL 313 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPK-EWVAVYYDNPDET 58 M + VA VGP+ +V + + + W ++ ++P D+P T Sbjct: 163 MQVTLTTLPAVRVAYMRHVGPYGVSVNQFWTGTFLPWCFAQGLLPGASSFGRGLDDPHIT 222 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 E R D +V VP F + + + GG+YA+A W + L Sbjct: 223 APEHCRYDAMVQVPDDFVARSPAS---MATLPGGRYAIAPFEGTVPQLTVAWTELLRDWL 279 Query: 119 QDSAYEMLPKPCFEVYLNN---GAEDGYWDIEMYVAVQP 154 S ++ +P FE + A G E+ + VQP Sbjct: 280 PASGMKLDGRPLFEHMPPDARYDAATGVMQCELCIPVQP 318 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 10/158 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 I+ E + VG + Q + K F+ L W+ N++ + VY+D+P Sbjct: 118 EVVIRYVEPMEILSVDHVGSYMQ-IGKAFDALFGWLAKHNLLAGQMRMIGVYFDDPGVVE 176 Query: 60 AEKLRCDTVVTVPGYFTLPENSE-----GVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 + LR V +PG + V +T I GG+YAV D + + Sbjct: 177 EQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAAYDWLY 236 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYV 150 + L S E P FE YLN+ E ++ E+ + Sbjct: 237 GTWLVQSGREAADAPVFEEYLNSPKETAPAELVTEICL 274 >UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC1_DESAD Length = 153 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 M+ +I + +A VGP+E+ V K +E+L W + + VY+D+P + Sbjct: 1 MDVQIWTLDPAKMAYAEHVGPYEE-VGKAWEKLCAWAGPNGHFNEKTRFYGVYHDDPGQV 59 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 PA +LR + +T+ +P G+ L +GG+YAV + W +F+ L Sbjct: 60 PAAELRSEACITLENEVEVPA---GIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWL 116 Query: 119 QDSAYEMLPKPCFEVYLNNGAED-GYWDIEMYV-AVQ 153 S PC+E Y+N+ + + + ++ Sbjct: 117 PQSGETHAEAPCYEQYMNDPNNTKPEHLVTILLMPLK 153 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 N ++ E R + GP+ + + + FE +S+N+ P + VY D P E P Sbjct: 127 NVTLRDEPARHLVTVPHRGPYAE-IGRAFEHFSALANSRNLWPQLGPVLGVYLDAPGEMP 185 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 ++LR G T EG+ + GG+ AV + A + F L Sbjct: 186 EDQLRSYAGAEYRGDGTP----EGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGGWLP 241 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S +PC+E+YLN+ ++ E+ + ++ Sbjct: 242 QSGETPADQPCYEIYLNDPRATAPEELLTEIVLPLR 277 >UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB Length = 299 Score = 147 bits (372), Expect = 8e-35, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + IK T+A G + + + K FE+L + S+ ++ A+YY +P Sbjct: 145 DVAIKTLPSETLAVLPHRGAYME-IGKAFEKLFGILVSRQVIGQIGAMKALYYSDPTHVA 203 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + L+ + F + + E GG YAV + D + + L Sbjct: 204 EDDLQSAAGAVIGDGFPVEAP---LETRETRGGDYAVLRYKGPYADMKWAYEWLYGEWLT 260 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 S E PC EVYLNN + D+ ++ + ++P Sbjct: 261 QSGREPDDAPCLEVYLNNPRDTAPADLLTDICLPLKP 297 >UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes RepID=Q81BV9_BACCR Length = 296 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 10/161 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKN---IVPKEWVAVYYDNP 55 N EI + VA +G +E+ K E+L + +N + + +Y+D+ Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T LR VT+ T+ N G+ I G+YAV + D++ W + Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGI--MVIPSGKYAVGHFEICQDEYKGAWDFIYG 254 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQP 154 L +S Y+ FEVY N+ + +++YV ++P Sbjct: 255 EWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEP 295 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDE 57 M+ ++K ++ V VG +E+ + + + QL+ + ++ I ++ A YDNP Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVL 229 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP K R + + +P + + I GQYAV + G + + F++ Sbjct: 230 TPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHW 289 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 L S YE P E YLN+ DG+ ++E+Y+ ++ Sbjct: 290 LPQSGYEPDHFPVIEHYLNDARVDGFVEMEIYIKLKA 326 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 + EIK R V L G ++ + +L ++ + + ++ + +Y+D+P Sbjct: 131 LKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKLPMGDFSPLCIYHDDPKV 190 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TPAEKLR D + +P V + G+YA+ + + D+ + + Sbjct: 191 TPAEKLRTDVCMVMPVQV---APKGDVGFKTLPAGRYAIFLYKGTYDNLQAVYDTIYGKC 247 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L + + +P E YLNN E ++ E+Y+ V+ Sbjct: 248 LPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPVE 285 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 146 bits (368), Expect = 2e-34, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDET 58 + E+K VA GP+ Q + ++ L W + +V +++ + YD+P+ T Sbjct: 154 LEPEVKVLAPVRVAFVRHTGPYAQ-CEAAWKTLCDWAFPQGLVMAQTQFMGICYDDPEVT 212 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +K+R D ++VP V + E+ GG+Y AV + + Sbjct: 213 APDKIRYDACISVPDNVQAEHP---VAIREVEGGEYVCAVWKGPYTGLTNAYAALCGQWG 269 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 S E P EVYLN+ ++ E+ + + P+ Sbjct: 270 GRSGREFRAAPSVEVYLNDCTSTPEQELLTEIRMPLMPR 308 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 7/157 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPK-EWVAVYYDNPDE 57 E+ + E RTVA G +++ + F LM W + + E + +++D+P Sbjct: 141 KVEVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGLAHGAEMMCLFHDDPQV 200 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T AE +R + +T+ G + V + GG+YA + D W F Sbjct: 201 TDAELMRFSSCLTLRGPADVE---GEVGKMMVGGGRYACGHFVITHDQSQAAWEYMFGDW 257 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 L S YE PCF++Y + E G ++ + + V+P Sbjct: 258 LPLSGYEPENIPCFQLYPSMTGEMGPHEVVICIPVRP 294 >UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae RepID=A1JN27_YERE8 Length = 157 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M ++I +++ + + +VGP+ +T+ KGF+QL I K+W+ +Y+DNP+ P Sbjct: 1 MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKDWLVLYWDNPETNPP 60 Query: 61 EKLRCDTVVTVPGYFTLP-ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR D ++V + LP E S+ + L I G YAV RV DD+AK W + +N L Sbjct: 61 AELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQHLP 120 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKH 156 S Y C+EVYLN+G DGY+DI++Y +V+ Sbjct: 121 QSGYRPTEGACYEVYLNDGRADGYFDIDIYQSVEKDQ 157 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 144 bits (364), Expect = 7e-34, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPA 60 EIK+ +R++ G + + + F +L + S+ ++ V +YYD+P P Sbjct: 133 VEIKEVPERSLQALFHRGSYFE-MGVVFSKLAAMLSSRGVIRKCGPIVGIYYDDPSLVPL 191 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++LR VP F N+EG+ I GG+ AV + ++ + L Sbjct: 192 DELRSHVGAVVPQNF---ANTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVWLPT 248 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S E +PC+EV+LN+ D+ E+++ +Q Sbjct: 249 SGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPLQ 283 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 144 bits (364), Expect = 8e-34, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 ++ ++ A VG + + F ++ D + + + + V YD+P T Sbjct: 176 LDVSTREFPTYPFAFLRHVGRYND-IGPVFRRVAAIADERRLFGPDTKVMMVAYDDPSVT 234 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 ++LR D V++ ++ +I EI GG YAV V + D + S L Sbjct: 235 DEQRLRSDAGVSL---TDPTVDTGELIKGEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWL 291 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 +S YE +PC +VYLN + D+ E+ V ++ Sbjct: 292 PNSGYEAADRPCVDVYLNKVEDTRPEDLLTEIRVPIR 328 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 7/157 (4%) Query: 2 NYEIKQEE-KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 + I Q + + + G + + + FE+L W + + + +AVY+ +PD T Sbjct: 148 SVSISQLDTPIHMVVYPHQGSYMN-IGQAFEKLSGWAGMRQLFDQTTRMMAVYFHDPDNT 206 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P +LR +T+ +P + +I G YAV + D + + FF + L Sbjct: 207 PEAELRSLAGITLTPE-KVPNLEAPLEHYDIQSGNYAVLRYKGPYADMHRAYKWFFGTWL 265 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 +S YE+ +P FE YLN+ + D+ ++Y+ ++ Sbjct: 266 AESGYEVADQPPFEEYLNDPRQVAPNDLLTDIYMPLK 302 >UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2BPM6_9GAMM Length = 292 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59 N E+ + E + G+ G + + + F++L M+ SK ++ E + +YY++P Sbjct: 139 NVEMMEFETTNLLGYEHKGDYME-IGNAFDKLFMFAGSKRLIGPETRSIGIYYNDPGSVD 197 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A +LR ++V E + +I G+ A + + + KP+ FF L Sbjct: 198 ASELRSHACISVEAPRDAEEEQDP-ENLQIPAGRCATLLFKGPYAELEKPYNWFFGQWLP 256 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146 S E P FE YLN+ ++ Sbjct: 257 QSGLEAADFPPFEEYLNDPRTTAPSEL 283 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59 + EI++ + GP+ + + K F L + ++ +P+ +AVY D+P P Sbjct: 128 SIEIQRFDAIPAFAIRHDGPYIE-IGKAFGMLFGQLAARGALPERIEMIAVYLDDPTAVP 186 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+LR + PG L E + EI GG YAV + D + + F + L Sbjct: 187 LERLRSFAALAAPGGKDLDPPVERI---EIAGGDYAVLRHKGPYADMSAAYNWLFGTWLP 243 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S E +P E YLN+ + D+ ++ + ++ Sbjct: 244 QSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLR 279 >UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR9_DESPS Length = 155 Score = 142 bits (358), Expect = 3e-33, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDET 58 MN +IK+ + VA +G + + T K+ F +L+ W + K + + +Y+DNP+ T Sbjct: 1 MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGTILGLYWDNPETT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P EK R D +TVP + + I+GGQYAV + + F + W F+ Sbjct: 61 PPEKCRTDACITVPDG---TLAEGTIGVQLISGGQYAVCHFEITAEGFQQAWKDAFS-WF 116 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAVQP 154 YE KPC+E++ NNG ED W ++ + ++ Sbjct: 117 IGKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPLKK 154 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 12/161 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55 + ++ ++ +A VGP+ + + + W + ++ E V +Y+DNP Sbjct: 149 SINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCAWAGPRGLLGAPNSEMVCIYHDNP 208 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T +KLR VTV E S + L I G+Y A + D+A W Sbjct: 209 EITEDDKLRISLGVTVAPG---TETSGEINLLTIPAGKYVCARFELTSKDYAGAWNTLMG 265 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAVQP 154 L +S Y+ +P +E YL++ +ED +E+ + V+P Sbjct: 266 -WLPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRMGVKP 305 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 141 bits (355), Expect = 8e-33, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 ++ IK VA VGP++Q + L + +++ + +D+P T Sbjct: 137 LDVVIKTLPLMKVACVRHVGPYDQCEP-AWASLCAKAGPLGLFGPDTKFIGIGHDDPQIT 195 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P EK+R D +TVP F + + + I G YA AV + + A + Sbjct: 196 PPEKIRYDACMTVPDSF---AGTPDLPVASIGGRDYASAVVKGPYTNLAPAYAWLCGVWG 252 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 D E +P E+YLN+ + E+ V V P Sbjct: 253 PDCGREFAMEPSMEIYLNDPKTTPPDQLLTEILVPVGP 290 >UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC family n=1 Tax=Chromobacterium violaceum RepID=Q7NYH2_CHRVO Length = 284 Score = 141 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 4/146 (2%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETP 59 EI + + V H GP+ + + K F+ L + V P +Y D+ +TP Sbjct: 131 QVEIVERDAVKVLMRHHRGPYME-IGKAFDALRAVQGPQQGVGAPSRSFGLYLDDQAQTP 189 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A R TVP + +G I G+YA + + + W + L Sbjct: 190 AADCRSIACATVPAFMEGKA-MDGFEWGSIPAGRYAAVLHTGPYSELGECWDWLYRHWLP 248 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD 145 S PC E YLN + + Sbjct: 249 ASGEMPGDTPCVEEYLNAPYDTPPAE 274 >UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein; putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9 Length = 155 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 2/155 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M I + + + GP+ Q++ GFE+LM W + +W+A+YYDNP E Sbjct: 1 MQVRIVSLAAQPLFVLRVQGPFAQSLGPGFERLMAWSARHGL-RGQWMALYYDNPREVAP 59 Query: 61 EKLRCDTVVTVPGYFTLPENSE-GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + LR D +T + G+ + GG YA+A RV +DFA PW F+ L Sbjct: 60 DALRADVALTTASVTLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQALP 119 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 Y PCFE YL++G G W +E+ V V+ Sbjct: 120 ACGYRPDGGPCFERYLSDGRGSGEWLLELGVPVRK 154 >UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus RepID=A7GQI7_BACCN Length = 152 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 MN +I+ K +A VGP+ + E+L W K + + + + +DNP+ T Sbjct: 1 MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHLDETAIVLGISHDNPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E R D + + + + V +E+ GG+YA+ + K W + F++LL Sbjct: 61 PPESCRYDACIVIEKNEPID---DFVAESELPGGKYAIYEVEHTAEAIQKAWIEIFSNLL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 +S YE+ +P FE Y+ ++ E+ V ++ K Sbjct: 118 -NSDYEIDTRPVFERYMKKMVDN--HLCEICVPIRAK 151 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 +++ +R +A VG + V K +E++ +++ V +YYD+P P Sbjct: 117 VKVEDAPERRLAAMAHVGAY-NGVSKSYEKVAAVFTIRDLWKHARGMVGIYYDDPSTVPE 175 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 +LR V + +P+ E V+ I G + AV V + + + + L Sbjct: 176 AELRSYAAVELADDVVVPDPLEEVL---IRGDESAVLVMKGAYTGLQEAYEWLYGQWLPQ 232 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 S +P +E+YLN+ + D+ ++YV +QPK Sbjct: 233 SGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPLQPK 269 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 53/158 (33%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 M I + VA GP V + + W P + YDNPD Sbjct: 135 MQIRIVNFAETHVAALEHQGPPG-LVSESVARFRQWRMHSGQSPVASSRTFGIPYDNPDT 193 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TPA R + + N GV I G+ AV D + Y + Sbjct: 194 TPAHAFRFAVCGEIDE--AVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPLYRDW 251 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153 L S E+ P F YL+ E W ++YV ++ Sbjct: 252 LPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPLK 289 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 M+ I +A G V + + W + + P + + +D+P Sbjct: 135 MDVNIISFPTTRIAVLQHRGS-PDLVNTTAARFIAWRKTSGLSPVATSDTWGIAWDDPQT 193 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E R D TV G + EN+ GVI EI GG+ AV D A + + Sbjct: 194 TPQEAFRFDICGTVAG--PVGENAFGVINGEIPGGRCAVVRHHGSLDTLANSVWFLYRDW 251 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L S + P + YLN E ++ ++Y+ + Sbjct: 252 LPASGETLRDFPVYFRYLNFVHEVAEHELQTDIYLPL 288 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 138 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55 EI + + G + T K E+L + +N++ + +A+Y+DNP Sbjct: 146 EIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNP 205 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 T +LR +T+P + EN + + I G+Y V + +++ W +N Sbjct: 206 QFTQEHQLRTSICMTIPDNIVVKEN-DNLGNMIIPSGKYLVGHFDISKSEYSDAWDFMYN 264 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQP 154 L + Y++ FEVYLNN +++Y+ ++P Sbjct: 265 EWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPIEP 305 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 MN ++ + + +A GP + ++ W + P + + YD+PD Sbjct: 134 MNIDLVEFDHTLIAVLEHRGP-AEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDPDT 192 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 K R D V T+P+N++G+I I G+ AV + + + Sbjct: 193 VEPAKFRFDLCAEVKE--TIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW 250 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L +S E+ PCF Y N + D+ ++Y+ +Q Sbjct: 251 LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPLQ 288 >UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK9_DESVV Length = 156 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 7/158 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 MN I+ VA H GP+ + +++L W+ ++ E + V D P Sbjct: 1 MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTFETLFVGVLGDTPCGL 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 +E D V+VP + E V + I GG A V + A+ W + L Sbjct: 61 ASESTGYDAGVSVPQHI---EADGYVSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWL 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 S PC EVYLN ++ +++ + P Sbjct: 118 PASGRITREAPCVEVYLNAPDSTPDHELLTRLHLPLSP 155 >UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21DM1_SACD2 Length = 287 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 10/158 (6%) Query: 1 MN--YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56 M +I++ K + G G + + FE++ + SK + + +YYD+P Sbjct: 132 MKHTVDIEKFNKVELGGLAHQGDYLD-IGAVFEKVFVSAGSKQFLNEHSRSFGIYYDDPT 190 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 LR VT+ G+ + G +AV + + + F+ Sbjct: 191 SKDKSALRSHACVTLNPQQVKEA---GLDYLTLEAGNHAVLTFTGPYSELEQAYEWFYGE 247 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L S Y++ +P FE YLN+ ++ ++Y+ + Sbjct: 248 WLPQSGYQLADRPPFEEYLNDPKTVPPSELLTKIYLPL 285 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60 E++ + T G G + + + + +LM +P V + YD+PD T A Sbjct: 122 VELRDDPALTCIGLRHTGSYSE-CGQTWGELMAHAAKAGWMPHVLGSVGLAYDDPDITAA 180 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 E+LR D + + +L E+ G+YA+ + R + + + L Sbjct: 181 ERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYVGLIGRALPF 240 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 E+ +P E YL++ A ++ E+ V ++ + Sbjct: 241 RGVELANEPVIERYLDDPATVPLHELRTEICVRIETR 277 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 136 bits (344), Expect = 1e-31, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 + +I+ + +A G + + ++++ + + N P+ VYYDNP+ TP Sbjct: 122 DVDIQTTSDKRLAALSHRGDYAEG-SVAYQKVATIISTGNHWPQTRGMAGVYYDNPEVTP 180 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E LR V G +G+ ++TGG+YAV + A+ + + L Sbjct: 181 TEDLRSHAGVLWEGGAIP----DGLEEVQLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLS 236 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S + P FE YLN+ D+ ++Y+ ++ Sbjct: 237 SSQESLRDAPSFEHYLNDPTNTAPADLLTDIYMPLE 272 >UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6E7_9RHIZ Length = 283 Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 8/155 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--YYDNPDETP 59 + I++ + GF GP+ + + FE+ V N+ + Y+ +PD T Sbjct: 132 DVRIEEMGPAKLVGFEHTGPYTE-IGSAFEKFYAEVGPANLASQAMAIAAAYFSDPDITA 190 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+ R + V + G +I G+YAV + + K + F+ + L Sbjct: 191 PEECRSLAGMIVSPGLDVA---GGFDRFDILAGRYAVLQHKGAYAELPKAYQWFYGAWLA 247 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 DS P E YLN+ ++ E+ + + Sbjct: 248 DSGESAAAAPAVEKYLNSPMNTAPAELVTEICMPL 282 >UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU Length = 292 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 7/155 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK-EWVAVYYDNPDETP 59 + IK+ G + +++ +++LM W I + + +++DNP TP Sbjct: 139 LEPTIKKIPAFRAVYLRHKG-YNKSIALSWQKLMAWGFEHQISSQARQIGIHHDNPSITP 197 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + R + V F + + E AV + D ++ L Sbjct: 198 LAECRYIAALEVEEGF---RAQGLLGVMEFPPTLCAVFEVQGRYGDVLGLIDYVYHEWLP 254 Query: 120 DSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152 S YE P F +Y N G + ++ + V Sbjct: 255 QSGYEAKTIPAFALYQKNHFLDPLGNFQLDFCLPV 289 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 8/160 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPD 56 + +I + V +G ++ E+L + +N++ ++ +AVY+ +PD Sbjct: 142 DVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEKKSKPLAVYHSHPD 201 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 + EK R +++ T+ S+ + I+ G YAVA ++ ++ W + Sbjct: 202 FSDEEKQRTSICLSIKEPITVDGKSD-IGYMSISSGTYAVAHFEILQSEYGDAWDFLYGE 260 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQP 154 L S Y FEVY+NN E + +++Y+ ++P Sbjct: 261 WLPRSGYLPRNYFPFEVYVNNPNEHSENKHIVDIYLPIEP 300 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 8/158 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + I VA G + + + W + + P V++D+PD+TP Sbjct: 142 DVRIVDFPDTPVAVMRHEGDPA-LLGDTIRRFIAWRRAAGLPPRVSATFNVFHDDPDDTP 200 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 AE+ R D + P +GV I GG AV DD + L Sbjct: 201 AEQYRLDLCAATARVASNP---DGVTSGVIPGGPCAVLRQIGSSDDLRAASRFLYGEWLP 257 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155 S E+ P F ++ + + ++++ + P+ Sbjct: 258 RSGRELRDAPFFAQRVSFFPDVPEHEAVTDLFLPLSPR 295 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 3/76 (3%) Query: 76 TLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYL 135 T+ + V + + AV +F + + F V+ Sbjct: 135 TMTFTDDDVRIVDFPDTPVAVMRHEGDPALLGDTIRRFIA-WRRAAGLPPRVSATFNVFH 193 Query: 136 NNGAEDG--YWDIEMY 149 ++ + + +++ Sbjct: 194 DDPDDTPAEQYRLDLC 209 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 10/160 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK--NIVP--KEWVAVYYDNPD 56 MN IK + R +A G + V + +L+ W S+ N+ P E YD+P Sbjct: 128 MNIVIKNMQARRLAVVEHHG-HPEKVGESINKLINWAKSQAMNLKPKAGEAFGFAYDDPK 186 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T E + D +TVP L N VI + G+YAVA+ D+ Y + Sbjct: 187 TTEPEAFQFDLGITVPEQLKLEGN---VIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 L +S E+ PC Y N E ++ E +V ++ Sbjct: 244 WLPNSGEELGDLPCIFCYYNFDHEVAETELRTECWVFLKK 283 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDET 58 +I E + + + G ++ +E+L V ++ + K + + YD+P T Sbjct: 134 KPKIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQKLFTKGIKHIGLPYDDPKIT 193 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A+K+R D + + + V + E+ GG++AV + + FA + FN+ L Sbjct: 194 EADKIRYDACLIIHKDAK---PNGDVGVKELKGGKFAVFLYQGSYKHFADVYDHMFNAWL 250 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 +S +E+ P E Y+++ + E Y+ ++ Sbjct: 251 INSGHELRDAPSREKYISDARRVSEEKLKTEFYIPIK 287 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 MN I + +A +G ++ ++ Q + W + P + + + +PD+ Sbjct: 129 MNVNIVERPAEKIAYLSHLGSPDKVLETA-AQFIAWRKETGLSPVTKSKTYGIPFADPDQ 187 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TPA++ R D ++ +PENS GV EI G+YA D Y F + Sbjct: 188 TPADEFRFDIAGSIEK--AVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRNW 245 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L + E P F Y N E D+ ++Y+ ++ Sbjct: 246 LPEQPEEAGDYPVFFHYHNFVHEVNECDLITDIYLLLK 283 >UniRef50_D1B3I6 Transcription activator effector binding protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3I6_SULD5 Length = 287 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 6/159 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDET 58 ++ +I+ VA G +++T+++ + +L W + + +A+++ NP Sbjct: 131 LHVKIQTMPSFDVAYVRHKG-YDRTIQQAWLKLQAWALGHGVDFSDQRMIALHHSNPRFV 189 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + + + +P + + + I AV + V D K ++ Sbjct: 190 ESSQCHYVACLELPKGREFYRS-GDIGVMRIPQTFCAVFSLKGVYGDLKKYMDVIYHEWF 248 Query: 119 QDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQPK 155 SAYE + P F +Y N D +D++ V V+ K Sbjct: 249 PQSAYEKIALPSFAIYRENHFINADERFDLDFCVPVRFK 287 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNP 55 + EI++E+ + GP+ + F++L W D + ++ W +Y+D Sbjct: 137 LKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLISSTSRWFVIYHDFG 196 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 +ET ++LR ++V + S + + + GQYAV V ++ K WY + Sbjct: 197 NETDEDQLRLSVCMSVDRNLAV---SGDIGILNLHEGQYAVGSFMVEPSEYDKAWYYMYG 253 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 L S ++ + E Y + +E+Y+ + Sbjct: 254 KWLPTSGHKPDDRFSLEHYPKVEEQGDKRLVEIYIPI 290 >UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales RepID=Q2KTK1_BORA1 Length = 279 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 13/160 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-----PKEWVAVYYDNPD 56 + + T+A G + Q + + F++L + ++ ++ W+ VYYD+P Sbjct: 126 SVNLVSYPGLTLAALPHQGDY-QRIGESFDRLALLAVNQGLIAPHAESGPWIGVYYDDPR 184 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 + +LR V + + + I + V + + F+ Sbjct: 185 QVETGRLRSHACV-----ASKGAPGDPLQTLVIPAMRCGVVEYLGPYTEIDHAYDWMFSE 239 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYW--DIEMYVAVQP 154 L S E L P FE Y N+ +Y+ ++ Sbjct: 240 WLPASGEEPLDFPMFEEYANDPKTTPAAALLTRIYLPLRA 279 >UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b RepID=C8Q848_9ENTR Length = 153 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 2/154 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M I + + G+ L GPW++TV +GF QL WV + EW+A+YY NP P Sbjct: 1 MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWVARHAL-QGEWMAIYYGNPQVVPP 59 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++L +TV+TVP F L EG+ + GG Y V +DF W FF L Q Sbjct: 60 QELSVETVLTVPADFALAVG-EGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQQR 118 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 S +++ +PC+E YL++G++ G W + MY+ V+P Sbjct: 119 SDWQVDDRPCYEHYLSDGSQSGNWLLNMYIPVRP 152 >UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE Length = 315 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 10/158 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDET 58 E+K+ +G +++ + K +E+L+ W + + + + V +D+P T Sbjct: 162 KIEVKEMPDMKAVYCRHMGAFKE-IVKAYEKLIKWAEPRGLYIPNVTKSATVTHDDPSVT 220 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 K+R + V G + I GG+YAV + +DF K W Sbjct: 221 ELSKVRQSACIIVEGDVKGE---GEIGNLVIPGGKYAVGHFELGTEDFEKAWNTMC-KWF 276 Query: 119 QDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAVQP 154 +S Y+ +E+Y N + +++ + ++P Sbjct: 277 TESGYQQGDGCTYELYHNSHRTHPENKHIVDICIPIKP 314 >UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides RepID=Q5LFV9_BACFN Length = 382 Score = 131 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 2 NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 + IK+ ++ VA +Q + Q++ + N+ K + V++ D+ D Sbjct: 222 DCSIKRIKEFKVAYLKFERTHRNKQAYSTLWGQIIEFAKKYNLTDKGFKYVSISLDSLDI 281 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T +K R +TVP +P+ G I G Y+V + + K + + Sbjct: 282 TEIDKCRFLIGITVPYSMEVPK---GFGTLNIQAGLYSVFNIKGGYHELNKIYRNVYLDW 338 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPKHH 157 L +S Y + + FE+Y N + ++ E+Y+ ++ K Sbjct: 339 LPNSKYRLREQMTFEIYANTPNKTSTDELVTEIYLPIEAKQK 380 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 8/158 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 M +I + +A G + + + W S + P + Y++P Sbjct: 132 MTVDIVHFDTTKIALLKHRGSPSR-IMESVAIFREWRKSSGLSPITKSRTFNIIYEDPAV 190 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 AE RCD V + +N GVI + + GG+YAV D ++ Y + Sbjct: 191 VVAEDFRCDLAAEV--MKEVDDNEYGVINSTLAGGRYAVVRHFGPYDSISRCLYFLYGEW 248 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 L DS E+ PCF Y N+ E ++ ++Y+ ++ Sbjct: 249 LPDSGEELGDAPCFFQYHNHFPEVAEHELITDVYLPLK 286 >UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL96_9SPHI Length = 290 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 64/157 (40%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 + +I + + ++G +E ++K +++LM +V ++ + E + +D+P+ Sbjct: 135 LTPKIIDLPAQQLLSTRILGKYETSVIQKAWQKLMTYVFAQQLFYPTMEMFGISHDHPEI 194 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 + + VT+ ++ + G+YA+ + + Sbjct: 195 AGDILYQYEACVTLAKPVASE---GEFVVKTLPAGKYAMFTYQGSYAQLDTVYNLVLKQW 251 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L +S+Y + P F+ YLN ++ ++++ + Sbjct: 252 LFNSSYSLREAPIFDQYLNTPDNTPEEELLTKIFLPI 288 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 6/147 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + +I+ + R + GP+ Q + + FE+ V ++ + P + +Y+D+P+ Sbjct: 127 DVKIEDQPARRLGVIDHRGPYIQ-IGEAFEKAGSTVMARGLGPHLGAMLGIYFDDPENGA 185 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 AE LR + + V + GG++A+ A+ + F L Sbjct: 186 AEDLRSAAGFEMDEAAEITPPLREV---RLEGGKHAILTHTGPYTGLAQAYKYLFGEWLA 242 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146 + P FE+Y+N D+ Sbjct: 243 TAGEMPREAPPFELYVNTPMNTAPDDL 269 >UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium carotovorum subsp. carotovorum RepID=C6DEF0_PECCP Length = 154 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M+ I+ E V +VGP+ + + +GF++++ W ++ + +A Y+D+P + A Sbjct: 1 MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSIDKSLAFYWDDPSKVEA 60 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++LR D +T + G+ I GG YAV V DFAK W F+ + + Sbjct: 61 DELRADVAITCKEMPSTLPEDVGIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA-INA 119 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 Y C+E YL +G+ +G WDIE++ +V+ Sbjct: 120 QGYCPAGDICYESYLCDGS-NGKWDIEIWQSVEA 152 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 7/154 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 M E T+A + GP+ Q ++ + L W +K + + +Y+DNP+ TP Sbjct: 152 METT--TIEAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENAIFIYHDNPEITPD 209 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAKPWYQFFNSLLQ 119 EK R D VP + S V L GG YA V +++ + W + L+ Sbjct: 210 EKCRTDICFRVPAD---TQASGRVELQVFPGGSYAYIRQTVKQMNEYGQAWSELM-KLVV 265 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 D+ E +PCFE+Y + + D+ AV+ Sbjct: 266 DTGLESDERPCFELYHSFDPQTYVSDVSFCTAVK 299 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDET 58 + ++ + + VA G E+ ++ +Q + W + + P V +P+ Sbjct: 136 DVKLIELPIQKVAQLEHSGAPEKLMETA-KQFIEWRKTTGLSPVAISRTYGVPNGDPNTM 194 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 AE R +V +P+N GV+ + GG YAV D Y FF L Sbjct: 195 AAEDFRFRFCGSVNE--AVPDNEYGVVTGTLAGGCYAVIRHEGSHDAMESSIYGFFREWL 252 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 S M +P F YLN + D+ ++Y+ ++ Sbjct: 253 PQSGKAMRDEPLFFHYLNFIHQVDECDLLTDIYLPLE 289 >UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=Rhodobacter sphaeroides RepID=B9KLE9_RHOSK Length = 156 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 8/154 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPA 60 I++ R +A G +E+ + F Q+ ++ ++++ + + VY+DNP P Sbjct: 6 VHIRETSPRRLAALRHTGAFEE-IGATFGQICQILEERSLLSQAGCMIGVYWDNPLLAPP 64 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 L + VP + E + + GG++AV A+ + FF+ L + Sbjct: 65 GALHSHAGIDVPEGMEIAPPLEEL---RLAGGRHAVLQYTGPYSGLARAYRYFFSQWLPE 121 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + P E+Y N E + E+ V + Sbjct: 122 AREIQAEGPLIEIYRNAAMETPSDQLVTEICVPL 155 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 7/155 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 + + + +A G + + + + W + P + YD+P+E Sbjct: 158 DVTVIEMPAIPLAVMPHRGNPAR-LSHTLQAFIAWRKRNGLSPSHSRTFNLVYDDPNEVT 216 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + R D + G LP + EG+ I G+YA A + D + + + L Sbjct: 217 DDDYRFDLACEIQG--ELPADFEGMESRTIPAGRYARARLQGSDDALERLVHSLYAEWLP 274 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S Y++ P + + ++ ++Y+ + Sbjct: 275 SSGYDLADFPLLFERVRFFPDVSEHEMITDVYLPL 309 Score = 39.5 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 39/154 (25%), Gaps = 33/154 (21%) Query: 7 QEEKRTVAGFHLVGPWEQTV--------KKGFEQLMMWVDSKNIVPKEW-----VAVY-- 51 + +A G + + F + + + P ++ +V+ Sbjct: 84 KRAAFRLAY--RAGDSITNIGYDCGYDSPEAFNR--AFRKHFGLAPSDFRRSPDFSVWAQ 139 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWY 111 + +P + +P V + E+ AV R + Sbjct: 140 HYDP-------------IQTLRNQHMPAPLPDVTVIEMPAIPLAVMPHRGNPARLSHTLQ 186 Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWD 145 F + + F + ++ E D Sbjct: 187 AFIA-WRKRNGLSPSHSRTFNLVYDDPNEVTDDD 219 >UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales RepID=Q64RP2_BACFR Length = 280 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 12/159 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56 + EI E + + ++G + + + + +L ++ ++ W+ + +D+P Sbjct: 128 LKPEILTEPELKLVYIRIIGRYGEEEPYIEAWRKLRDFLQINGLLTPSTRWIGISFDDPT 187 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T E+ R TV + + I G+YAV R + + + ++ Sbjct: 188 VTKTEQCRFYACATVEHDVS---PQGAFGMKTIPQGRYAVYTLRGSYSGLQEMYDRIYSH 244 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153 L + FE YLN + D +Y+ ++ Sbjct: 245 PLPTA---FRDATSFEEYLNCEPDTEEKDYVTRIYIPIE 280 >UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZSG3_9SPHI Length = 292 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 6/157 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 + Y I+ + G + Q + ++ L+ + + ++ ++ + D+ + Sbjct: 132 LTYSIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLLKEDTHYLGELMDDDEI 191 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 E R + +T+P E + I GQY + + + Q F Sbjct: 192 VKDENCRYNAAITLPQEAVF-EPTGFFNTKTIESGQYVCVTHQGDRNKLDTVYEQIFLHW 250 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + + +E++ KP E YLN+ + D+ E+YV V Sbjct: 251 IVKNEFEIVDKPFLEFYLNDETDTATKDLLTEIYVPV 287 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAE 61 ++ + VA GP + ++ + W P+ + V YD+P+ E Sbjct: 146 LRTLDPIPVAALEHRGPPATLMASV-QRFIAWRRGSQAAPEPSTRTLGVLYDDPESVAPE 204 Query: 62 KLRCDTVVTVPG--YFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 R D + GV+ I GG+YAVA R D + + L Sbjct: 205 DFRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRGSTDAIGETVMGLYRDWLP 264 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAV 152 S + P Y+ + ++Y+ + Sbjct: 265 GSGERVRDAPLVFHYIERVPRVAEHEQVTDVYLPL 299 >UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK Length = 288 Score = 125 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 7/154 (4%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62 + ++ + V GP T+ +L + + W+ + ++ Sbjct: 135 VRLIEQPAQQVLALRHRGP-AATIPHTHRRLRWLIGE--LPGTVWLGMCREDAG--DPGS 189 Query: 63 LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122 C + +I G YA + + L S Sbjct: 190 GLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAAFNALYARWLPASG 249 Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154 YE +P E YLN+ ++ ++ V V+P Sbjct: 250 YEPDDRPALEHYLNSPRNAAPAELRTDLLVPVRP 283 >UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVG7_9BACL Length = 153 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 7/154 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58 M +++++ + A VGP+ + E++ W +N++ + + +DNP+ T Sbjct: 1 MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLNHSAILLGIPWDNPETT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P + R D + + P + + V + EI+GG Y V + + W + + L Sbjct: 61 PPKNCRYDACLVISQ--DEPLDDDTVHIGEISGGDYLVCTIKHTAQAMQQAWAELMPT-L 117 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 Q Y++ +P E Y G E+ V + Sbjct: 118 QAKGYQIDDRPILERYT--GEMLLKEFCEICVPI 149 >UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM Length = 305 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 5/147 (3%) Query: 7 QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCD 66 TVA + G + + + +L W + + E + +Y D+P+ TPA+K R D Sbjct: 161 TLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHGLADGECLFIYLDSPEITPADKCRTD 220 Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSLLQDSAYEM 125 +TVP G+ + GG YA+ V + W + ++ + + E+ Sbjct: 221 ICLTVPDD---TATGNGIEKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSA-VIAAQLEI 276 Query: 126 LPKPCFEVYLNNGAEDGYWDIEMYVAV 152 +PCFE Y + A G D+ VAV Sbjct: 277 DDRPCFEQYHHYDAATGKADVSFCVAV 303 >UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA30_9GAMM Length = 280 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 10/155 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETP 59 +I+ V G + ++ F QL + + +P + +YYD+P P Sbjct: 130 VKIRDIAALPVVALPHHGDYM-SIGASFSQLETLLTLRGHLPAPQARYFGIYYDDPAGCP 188 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +LR V + G P + + G+YAV R + + + + L Sbjct: 189 TAQLRAAAAVALGGADATP----PLQTLTLAAGRYAVLEHRGAYAELHRAYDWLYRDWLL 244 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 +S Y++ PC E YLN+ + ++ +Y+ + Sbjct: 245 NSPYQLADAPCLEEYLNDWQQVPPQELRTNIYLPL 279 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 123 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 11/155 (7%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA---VYYDNPDETP 59 EIK + +A +G Q F++LM W ++ +Y+D+ T Sbjct: 157 VEIKTLPQLELAYISHIGDQGQA--HTFQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITA 214 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 +E++R + + + V + G+ VA + D+F K W + F L Sbjct: 215 SEQVRMSACIVLKEPVSTD---GLVGTMTMPSGKCVVARMELAMDEFGKAWTELF-VWLN 270 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYW--DIEMYVAV 152 + Y+ + CFE+Y N+ + +++ + + Sbjct: 271 RNGYKTTERNCFEIYGNDPSTHPQHHFIVDLCIPI 305 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 9/160 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 EIK + + ++ + + +L+ + P+ +++++ D+P Sbjct: 221 KPEIKVISPIKIFCIEVGEAYKNKLKYRLLWNKLLHHAEQYEADPRYDKFISLSMDDPSI 280 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP EK R +T+ + +I GG+YAV K + + Sbjct: 281 TPTEKCRFYLGITLRDDTKARPVPG---IMQIPGGRYAVFRHTGSYSSLHKVYRSIYEEW 337 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 S Y FE+Y+N+ + ++ E+Y+ V K Sbjct: 338 FPKSKYHPQSTFSFEMYMNHPSTTETSELLTEIYIPVIRK 377 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 9/156 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59 +I + E +++ L G + K +EQL V S+ + K + V YD+P T Sbjct: 132 PKIVELEPKSLIYVALTGEYGTLNYNKAYEQLWGVVKSQKLFTKGIESICVSYDDPKITE 191 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A R + + + S V + GG+YAV + + + + Sbjct: 192 ASLQRSEVSLAIHKPAK---PSGEVSCKTLAGGKYAVFFYQGSYTQLSSVYDAAMR-WVV 247 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 DS YE+ +P FE YLN+ + E+Y+ VQ Sbjct: 248 DSEYEVRDEPMFEKYLNDCRRTPEGKLKTEIYIPVQ 283 >UniRef50_C5DA82 Transcription activator effector binding n=1 Tax=Geobacillus sp. WCH70 RepID=C5DA82_GEOSW Length = 160 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 19/166 (11%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM-------WVDSKNIVPKEWV 48 M Y++ + + V G G + K ++++ W + + + Sbjct: 1 MKYKVIERDSFQVVGIKREFSLVNGENLVDIPKLWDEVNEDGTVDLLWKLNNGQIKG-VL 59 Query: 49 AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107 V N + + G + G++ E+ ++ V D Sbjct: 60 GVCVTNSGTQSKQVMDYWVATEYDG-----DTPNGLLKFEVPASKWVVFEVHGPMPDAMQ 114 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 K W Q F+ L S+YE P EVY + + E+++ V+ Sbjct: 115 KAWNQIFSEWLPSSSYEHAGTPALEVYTDENPLSPDFYSEIWIPVK 160 >UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales RepID=A8EWB5_ARCB4 Length = 292 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 4/154 (2%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I + + G +++++KK +++L W+ + +I + +A+++DNP TP E Sbjct: 139 EPSIVKMPEIKGYYIRHKG-YDKSIKKTWQKLQTWIYTNDIKEYKQMALHHDNPIITPLE 197 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + + V + I G YA D K +++ L +S Sbjct: 198 DCQY-IAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGDVIKLIQWVYHTWLIES 256 Query: 122 AYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQ 153 YE P P + +Y N ++DG + ++ Y+ ++ Sbjct: 257 GYETTPNPSYTIYHKNHFLSDDGEFILDYYLPIR 290 >UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BIU8_TERTT Length = 313 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 6/153 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I + R +A G +++++ +++L +W + + A+ + NP P + Sbjct: 163 QPVICEVPSRLMAYIRHHG-YDRSIAHTWQKLDLWRFENGLHTQGQFALLHSNPCLVPLK 221 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 R V + P + + + GG +A V +F + + S Sbjct: 222 DCRYVACVEIH---KTPLQRSVINVLRLPGGIHARFHLAGVYGEFIPYLSRILQEWVPHS 278 Query: 122 AYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152 + P + Y N +D+E+Y+ + Sbjct: 279 GLRVRTTPIWVAYNKNQFTDSQHEFDLELYIPI 311 >UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850B59 Length = 159 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 16/162 (9%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51 MNY I +++ V G V G Q + ++++ + I +E+V V Sbjct: 1 MNYRIVEKDAFQVIGVSKVVSTVNGENHQAIPTFWDEVNESGVDERIAKLAGNQEYVGVC 60 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110 D P E+ T E + EI +AV + W Sbjct: 61 MDFDH--PNERFTYFIGAEDIANVTQTE----LEKREIPRNTWAVFESVGPMPHAIQAVW 114 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + ++ + Y+ P FE+YL + E+++ + Sbjct: 115 QRIYSEWFPSTGYKHAGGPEFELYLPGDVTQEDYRCEVWIPI 156 >UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CE13_9BACE Length = 283 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 11/158 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57 E+ +A ++GP+ + + + G+ +L ++ + K W + +D+P Sbjct: 133 EPEVLLISPMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKLQSKATRWFGISFDDPTI 192 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T ++ R +V S + I G+YAV + + + ++ Sbjct: 193 TKKKQCRFYACASVAQRIK---PSGAIGTLTIESGKYAVYTYKGSYSGLLRAYTYIYSR- 248 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 + + FE Y+ ++Y+ +Q K Sbjct: 249 --EKG-RLRNALSFEEYVTWSDNPAKQITKIYIPIQKK 283 >UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4 Length = 286 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 5/151 (3%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKL 63 + + + RT+A + GP+ + QL W ++ + EW+ +Y+DNP+ TP + Sbjct: 139 KTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLAQGEWIFIYHDNPEVTPPAQC 198 Query: 64 RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG-DDFAKPWYQFFNSLLQDSA 122 R D VTVP + V + I G+YA + + + W + + + Sbjct: 199 RTDIGVTVPAG---TVGAGEVEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGD-IVAAG 254 Query: 123 YEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 PCFE+Y + + D+ +VQ Sbjct: 255 LAFGDGPCFELYHSVSNDPLRDDVSFCSSVQ 285 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 12/160 (7%) Query: 1 MNYEIK--QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNP 55 MN +I + ++ +AG +G +++ F++LM W K ++ + + +Y+DNP Sbjct: 145 MNAQIVITELQEIKLAGVMHIGEFDKA-GNMFQRLMEWGAKKRVLATSDFKAITIYHDNP 203 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + T KLR T +T+ + + G YAV + D+ W Sbjct: 204 NVTQTSKLRFSTCITISEDI---NADGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMC- 259 Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + ++ YE FE+Y N+ D + +++ + ++ Sbjct: 260 IWVIENGYEFRDGDYFEMYHNDHKTHPDQKFILDICIPLE 299 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 10/158 (6%) Query: 5 IKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE-TP 59 I+ E V + P++ K +++L+ +V I E D P T Sbjct: 175 IRVIEPVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGIPDGETEYFTFSRDVPTIITS 234 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+ R V + E S + + I GG+YAV + + L Sbjct: 235 PEQQRIFVCVNNSDHL---EPSGIIGVQTIEGGEYAVFTMYGAYRQLPDVYTYIYRYWLF 291 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 +S Y++ FE YLN+ E + E+Y+ V K Sbjct: 292 NSDYQIRDSMVFEKYLNSPDEVEEDKLMTEIYIPVSKK 329 >UniRef50_O34775 SPBc2 prophage-derived putative transcriptional regulator yosT n=2 Tax=root RepID=YOST_BACSU Length = 149 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 8/155 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDET 58 M I++ + +A F VG + + K+ E W + + + D+P T Sbjct: 1 MKITIEELPELRIAYFRNVGEYGGKQNKELMESFKKWAQLNGVFHNSVILGIPQDDPSIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P E+ R D V + F + + + + ++ GG+YAV + + ++ W F+ + Sbjct: 61 PKEECRYDVGVVLNEDFNVLQPA---QVGKLPGGKYAVFLLDHTKEAVSEFWGNIFSE-I 116 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + ++ M +P E Y + ++ E+ V +Q Sbjct: 117 EKNSLTMRGEPIIERYTSQMIDN--HLCEVLVPIQ 149 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 6/153 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 +I + +R A VG + +++K + L W +S+ + +++ NP + Sbjct: 143 EPKITEVPERMAAYVRHVG-YNRSIKNAWLILKAWANSEGRSFEVQFGLHHSNPAWVELD 201 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 K R + + V I GG +AV V + L S Sbjct: 202 KCRYVACIAIDKPLKY---RGVVNQMVIPGGLHAVFRLHGVYGELLPQISMVLEKWLPAS 258 Query: 122 AYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152 +++ P + Y +N E ++++ Y+ + Sbjct: 259 GFKLRSTPAYVHYHSNHFVNESEAFELDFYLPI 291 >UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae RepID=B1HRP5_LYSSC Length = 287 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 17/165 (10%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVA 49 M Y+I +++K V G G + + ++++ + + Sbjct: 128 MKYKIVEKDKFQVVGVKRTYNCQDGENTREIPLFWQEINESGFDHQLYQLNNGNINGVLG 187 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108 V N ++ + + + E ++ E+ ++ V D Sbjct: 188 VCVPNTNQGQQGFIDYWIATN-----HVGDVGEDLLTMEVPASKWVVFEVHGPMPDAMQN 242 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 W Q ++ + YE EVY A E+++ ++ Sbjct: 243 TWKQIYSEWFPSNPYEPAGTAELEVYPEEDAYSPDSYSEIWIPIK 287 >UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae RepID=YGIV_ECO57 Length = 160 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57 ++ I VA + + + +MW + P + V +D+P Sbjct: 6 LDVNIIDFPSIPVAMLPHRCR-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 T E R D +V +P+N GV E+TGG+YAVA DD + + Sbjct: 65 TAPEAFRFDICGSVSE--PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRHW 122 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIE--MYVAV 152 L S +M P Y N +E +YV + Sbjct: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPL 159 >UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4 Length = 302 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 7/151 (4%) Query: 5 IKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMM-WVDSKNIVPKEWVAVYYDNPDETPAEK 62 +KQ R VA +GP+ +T ++ L+ + + + P +++Y+D PD T + Sbjct: 153 VKQMPARRVAYMRRMGPYGKETCEQAHRDLLALFASDEAMTPAGTLSLYWDIPDITDETR 212 Query: 63 LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122 R D + + + I G YAV GD W F L Sbjct: 213 CRTDICIELGPEIHAGRQ---LTTQTIAAGPYAVCQFIARGDQLVTTWETAFG-WLVSKG 268 Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI-EMYVAV 152 +PC+E Y D + ++ + + Sbjct: 269 LSCDDRPCYEQYHAGTDPDRDHYVFDICIPL 299 >UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales RepID=C6CRY2_PAESJ Length = 301 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 20/171 (11%) Query: 1 MNYEIKQEEKRTVAGF----HLVGPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAV 50 M Y+I + V G+ G + + +++ + KNI + + Sbjct: 134 MEYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNRVHKESPVELGI 193 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD----- 105 Y+ ++ + + + EG++ E G +YAV V + Sbjct: 194 CYNFD--MGSDSFSYLIGMEAESFDGVE--GEGLVCREFDGAEYAVFTTPKVPREQFSSS 249 Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155 W F S YE P FE+Y E +++Y+ ++ K Sbjct: 250 IQNTWMTVFGEWFPHSGYEHAGTPEFELYDERSNHELSEIQMDIYIPIKKK 300 >UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus RepID=B9J2X1_BACCQ Length = 159 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 7/159 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M IK VA G + + + + +L+ W + P E ++ + DNP+ Sbjct: 1 MKVIIKNLPSLEVAFIRRTGSYFEP-QDHWGKLLNWSIENKLYPPEQSFIGISLDNPELV 59 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + R D VT+P F + E V + GG YA+ ++ + + L Sbjct: 60 ASHMCRHDACVTIPKNFEKEQ-HEDVQFKSVDGGLYALYEFYDKPHKLSEVYRYMYAVWL 118 Query: 119 QDSAYEML-PKPCFEVYLNNGAED--GYWDIEMYVAVQP 154 +S Y + E +NN AED G ++++V+++ Sbjct: 119 PNSEYSADYDRDNLEFCMNNVAEDLEGKLKVDLFVSIKK 157 >UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA Length = 306 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%) Query: 2 NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 ++ + + G + G + V K +++L +S ++ + V Sbjct: 140 EVRVETKPAFILKGMRGEITGLFSLDPNFADVVPKLWQRLDAEANSTSLSFGHCLGVVDV 199 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPE----NSEGVILTEITGGQYAVAVARVVGDDFAKP 109 L + + +P SE + + + YA + D + Sbjct: 200 TKVAFDGSNLFYWAGIELRSDIAMPALPSVVSEQLAILNVPKQTYAAVKHKGPIDRLPQT 259 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYW-DIEMYVAV 152 F L S Y + EVY ++ D ++E +V + Sbjct: 260 LEWFILHWLPTSGYRGVDGYELEVYPDDYQADAAHAEMEYWVPI 303 >UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseudomonas aeruginosa RepID=B7V1U1_PSEA8 Length = 270 Score = 114 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 8/155 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59 M+ I + +V G G T+ + +E+ + I K V Y + P Sbjct: 120 MHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIP--REHEIAGKHDPEVSYGICAQQP 177 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + V + +PE G++ ++ +YAV + A+ + ++ LL Sbjct: 178 NGEFHYVAGFEVQEGWPVPE---GMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLA 234 Query: 120 DSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAV 152 + E FE Y G D +++Y+ + Sbjct: 235 ERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPI 269 >UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q13JQ4_BURXL Length = 281 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 10/155 (6%) Query: 3 YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59 + + VAG + +++ + V V Y+ Sbjct: 132 PRFEDGKAFLVAGLNERYTNETCAAIPSQWQRFGDYFGKVPGQVGNVAYGVCYN---ADD 188 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + V V + LP + I+ +YAV R + W +N L Sbjct: 189 NGNIDYLCGVEVSDFSALPA---ELSRLRISPQRYAVFSHREHVSTIRRTWNTIWNQWLP 245 Query: 120 DSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQ 153 S + P FE Y G +E+++ ++ Sbjct: 246 ASGHIPADAPNFERYDAKFDPVSGMGGLEIWLPLK 280 >UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4ERY7_9RHOB Length = 232 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 7/156 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + I++ E VA GP + ++ ++W +K + P E V++ +P T Sbjct: 80 DVTIRETETIPVAIIEHRGPPA-GIGATIQRFILWRKAKGLSPLNSETFNVFHSDPQSTD 138 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + R D V + E+ +GV+ I GG+ AV DD + L Sbjct: 139 PREYRLDICVATDRG--IDEDEQGVVSGVIPGGRCAVLRVVGNSDDLETASLYLYRDWLP 196 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153 +S E P + + E + +++ ++ Sbjct: 197 ESGEETRDFPLYCQRIAFFPEVSEQEAVAGLFLPLK 232 >UniRef50_A6LWY8 Transcription activator, effector binding n=5 Tax=Clostridium RepID=A6LWY8_CLOB8 Length = 151 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 8/155 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 M+ I+ + +A VGP+ + EQL W ++ + + + DNP+ T Sbjct: 1 MDINIEMIPEYKIAYIRKVGPYGLENVQVMEQLKSWAKENSLFNERSIIIGITQDNPEIT 60 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 R D + V F + + T GG+Y V D K W + F L Sbjct: 61 EPADCRYDACLVVSDEFDFESKNINIGKTI--GGKYCVFKINHTVDAIQKAWIEIFLE-L 117 Query: 119 QDSAYEMLPK-PCFEVYLNNGAEDGYWDIEMYVAV 152 Y++ K E Y E+ V + Sbjct: 118 SKRNYKIDDKSKIIERYTMQMI--SNHYCEICVPI 150 >UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus RepID=Q5WGK8_BACSK Length = 280 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 17/165 (10%) Query: 1 MNYEIKQEEKRTVAG--FHLV---GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51 M+Y+I +++ TV G G + + + + SK + P + + Sbjct: 122 MDYKIVEKDAFTVVGKSIRTTTIGGENNRKIAAFWNESNRNGLSKQLAKNCGPLGLLGIC 181 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110 D E L + +I +A+ + K W Sbjct: 182 IDFDK--QQENLTYLIAAE----KNSDQIPVDWETRQIPAATWAIFPVHGAMPNAMPKVW 235 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQP 154 + F+ + YE P EVY+++ + E++V V+ Sbjct: 236 ERIFSEWFPATGYEHSGGPEMEVYVSDADPYSKDYYSEIWVPVKK 280 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 9/157 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKG--FEQLMMW--VDSKNIVPKEWVAVYYDNPDE 57 +IK+ + + ++QL+ + V +N +V++ DNP Sbjct: 222 EAKIKRINTLKAVCIEVGDTFRDKYAYTTIWKQLLHYKAVHLQNGPGNRFVSISQDNPWV 281 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E+ R V V G ++L EI GG YAV + D + + +N Sbjct: 282 TPMEQRRFYIGVLVEGRANSE---GKLLLREIPGGMYAVFRYKGSYSDLPEFYKTIYNQW 338 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S Y FEVYLN E ++ E+Y+ + Sbjct: 339 FPYSMYHQKRPLTFEVYLNAPDETPVEELLTEIYIPI 375 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 10/155 (6%) Query: 3 YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59 E+ + G Q + +++ ++ E V NP+ Sbjct: 128 PRFVDAEELLIVGLSERFNVETAQGIAALWQRFGPYIGRIPGQQGSETFGVCC-NPE--D 184 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 V V +P G+ L + +YAV + + + F L Sbjct: 185 DGSFEYIAGVLVNRAAEVPA---GLTLQRLAAHRYAVFLHEGHISSIHETFNAIFQHWLP 241 Query: 120 DSAYEMLPKPCFEVYLNNGAED-GYWDIEMYVAVQ 153 + + P FE Y + G +E++V ++ Sbjct: 242 TAGVQTAAAPEFERYSEDFDPMAGTGRVEIWVPLR 276 >UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=root RepID=Q187G0_CLOD6 Length = 288 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 11/161 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK---NIVPKEWVAVYYD---- 53 MN I++++ TVAG + +++L V + N+ E V V +D Sbjct: 127 MNIRIQKKKAFTVAGVNQQNINSSICASLWQKLFSKVSHEEMLNLGTGEVVGVCHDILSL 186 Query: 54 -NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWY 111 N D + + V G+ + EI +YAV + W Sbjct: 187 DNHDVLDSNTINYMAGYIVTDVDKARSM--GLDILEIGETEYAVVELTGSVPECIHNGWK 244 Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + Y KP FE Y + +E+++ V Sbjct: 245 YAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPV 285 >UniRef50_A0M275 Effector binding transcriptional activator protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M275_GRAFK Length = 163 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 63/163 (38%), Gaps = 12/163 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDS------KNIVPKEWVAVYYDN 54 +I++ + + + G + + + M + +++ + + Sbjct: 4 EPKIEELKSKKLIGICITTSLADDKTSLLWNRFMRLRGAIERNKGESLYSVQEYGENFMK 63 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 + K V + +P+ G+ EI G+YAV + + +FA+ F Sbjct: 64 GEFDTQSKFNKWAATEVSDFKEIPK---GLEKLEIPAGKYAVFIHKGTASEFAETSNYIF 120 Query: 115 NSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQPK 155 N L +S Y++ +P FEV + G E+ ++++ + K Sbjct: 121 NEWLPNSDYDLDDRPHFEVLGADYKGPENPDSKEDIWIPITAK 163 >UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RP02_RHORT Length = 160 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 8/149 (5%) Query: 8 EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEKLRC 65 A +GP+ + + F ++ W S+ ++ E + + YD+P TPAE LR Sbjct: 9 LPAMIFASLRHIGPYGEA-GETFRKITDWAVSEGVMTPETQILGLSYDDPKTTPAEILRY 67 Query: 66 DTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM 125 D VT+ LP G+ L + + + + + + + + + +L + Sbjct: 68 DACVTLKTPVALP---PGMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPTLVP 124 Query: 126 LPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + E+Y+N+ A D+ E+ VAV Sbjct: 125 IATGAIEIYVNDPATTAPADLITELGVAV 153 >UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria RepID=C7RI56_ANAPD Length = 282 Score = 111 bits (277), Expect = 9e-24, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 7/156 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNPDE 57 M+ +I++++ VAG K +++L+ V + + V YD Sbjct: 127 MDIKIEKKKAFKVAGIKSDVTKSSNFPKVWDRLVEKVPREKFEEFGSGQIFGVGYD-YIM 185 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNS 116 + + E G+ I +YA+ + + W + Sbjct: 186 DEEDSFIYLAGFDLTDEVKAKEL--GLDTLSIPEKEYAIVSLQGPIPKCIHEGWKYIISY 243 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 Y P FEVY + + +E++V + Sbjct: 244 FFPKEGYRHDESPDFEVYGDGDPNSEDYKMELWVPI 279 >UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=C4IM74_CLOBU Length = 277 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 7/152 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I+ + V +G + + ++K +E+ ++ +D+P T A+ Sbjct: 133 KISIEIINDQFVIYERRIGNYNELIEK-WEEFTDKYKKYIDENTVFLERTFDDPSITSAD 191 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 K D +TV + I GG++AV + + + F Sbjct: 192 KCIYDICMTVDKNCDVENTC------VIPGGKFAVYHYKGFPEQIYTAYQNMFQVWFPVV 245 Query: 122 AYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + + F++Y + Y ++++ + ++ Sbjct: 246 KKRIDNRYGFDIYNKIDCDSMYMELDICIPIK 277 >UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IEN8_9CLOT Length = 279 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 11/159 (6%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDE 57 M+Y+I++++ V E ++ + + + + + P E Sbjct: 128 MDYKIEKKDSFRVVTKTRKFTEENRIISIPMFWSEYCEDGLHQKV--CGMFGICL--PGE 183 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNS 116 ++ +PE G I +I +AV D W + ++ Sbjct: 184 PDCKEFEYGIGCEEKYVKQIPE---GFITIDIPSYTWAVFKCVGAMPDSIQNMWRRIYSE 240 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 L S YE++P E+Y + + E+++ V K Sbjct: 241 WLPQSKYELIPGYDIELYTEGDIKSEDYISEIWIPVIEK 279 >UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides RepID=D0TT37_9BACE Length = 383 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 9/161 (5%) Query: 2 NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57 IK+ +A + ++QL+ + ++ + K V++ D P Sbjct: 225 ELSIKKVHNMRIAYLKLERTNNISHSFSLLWKQLLQFSENYELPSKGCQYVSLTLDYPLI 284 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 TP E R VT+P F P+ G + EI+ G+YA+ + + + + + + Sbjct: 285 TPEEHSRFMVGVTLPQSFETPK---GFGMYEISSGEYAIFRFKGLYHELNRVYRHIYLDW 341 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPKH 156 L S Y + FE Y+N + ++ +Y+ V K Sbjct: 342 LPTSDYTLREPFTFETYINTPEKTPASELITAIYIPVTRKE 382 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 8/158 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDETPA 60 +K VA G +E + F +L+ W K I + V +D P TP Sbjct: 149 VTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRNDCFLLGVGHDAPTITPK 208 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-DFAKPWYQFFNSLLQ 119 E LR D + V F + ++ GGQ+A + + + + + Sbjct: 209 ELLRFDCCIEVDQPFHSE---GKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQH 265 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYW--DIEMYVAVQPK 155 + E + P E+Y Y ++YV ++ K Sbjct: 266 NKNIEFVGLPVVEIYRTTTINPSYKLNQTDIYVPIRVK 303 >UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QIW6_9RHIZ Length = 174 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 6/148 (4%) Query: 10 KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDETPAEKLRCDT 67 + G + + K +E+L +D + + +DNP + ++ R D Sbjct: 13 PTRLIYVSATGRYSDVIPKVWERLFRQLDDSGLYESIGRGYGMAHDNPLDVGSKNCRYDA 72 Query: 68 VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML- 126 V + + +T + G YA D + Sbjct: 73 CVEIRSGIE-ERSLPEFGITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQ 131 Query: 127 PKPCFEVYLNNGAEDGYWDI--EMYVAV 152 +P +Y++N D+ ++ V V Sbjct: 132 NRPVVSIYMDNPNNYADQDLRSDICVPV 159 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 3/76 (3%) Query: 5 IKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I A L G ++Q TV+ + + + V++Y DNP+ + Sbjct: 90 ITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQNRPVVSIYMDNPNNYADQ 149 Query: 62 KLRCDTVVTVPGYFTL 77 LR D V V Sbjct: 150 DLRSDICVPVSTVEET 165 >UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP Length = 280 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 56/158 (35%), Gaps = 12/158 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIV--PKEWVAVYYDNPD 56 + E+ + + + + G + + + + L+ ++ + ++ + +D+P+ Sbjct: 130 LEVEVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQALSEDTRFIGLSFDDPN 189 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 T ++ R +V S + G+YAV + + + Sbjct: 190 VTHPDQCRFYACASVGKEII---PSGMFGTIRLQKGKYAVYTLKGSYAGLQELYNTINID 246 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153 Y FE Y++ ED + ++Y+ ++ Sbjct: 247 F----NYTKRHGMAFEEYVSYSEEDDDTQVTKIYIPIK 280 >UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE Length = 297 Score = 108 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 12/160 (7%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQ-----LMMWVDSKNIVP--KEWVAVYYDNP 55 Y I + E V +G ++ FE L + +++P +++ + YD+ Sbjct: 138 YRIVESETIPVLFLSYIGNYDTCSTVAFETYTWDCLYEYAKENSLLPDKEDYWGIAYDDT 197 Query: 56 DETPAEKLRCDTVVTVP-GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 D T EK R + + G T P + + ++ G YAV V + + Sbjct: 198 DITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAVYVHQGDYALLDAFYETIL 257 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L Y + P E YLN+ + ++ E+++ + Sbjct: 258 KQ-LPQF-YSLGETPILEHYLNSPTDTDVKELLTEVWIPI 295 >UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKC5_ALKOO Length = 149 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 6/154 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59 M ++ + G G + + +E K + D Sbjct: 1 MEGKLFNIQGFKAVGISYFGDNANGEIPRLWEAFNQQYKDIKNKSKSMFYYGICDSDMDA 60 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + V V + +PEN + + G+Y V D + + F+ L Sbjct: 61 QGRFHYTACVEVDHFEDIPEN---MEAKAVPEGRYLVYTYSGDIKDLGEFYGNIFSKWLP 117 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 S YEM +P E+Y ++G + ++Y+ V+ Sbjct: 118 ASEYEMDYRPQLELYDERFMQNG--EFDIYIPVK 149 >UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseudomonas entomophila L48 RepID=Q1I6P7_PSEE4 Length = 165 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 10/154 (6%) Query: 4 EIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPA 60 + +AG + + +K +++ W+ + V + NPD Sbjct: 16 RFEDGRTLHLAGLSNRYDFSRLAELKLLWQRFAPWLGRVPGQHGHDSYGVCH-NPDG--Q 72 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 V V G TLPE G + YAV R + + F L Sbjct: 73 GAFDYLAGVEVTGAATLPE---GFTTLVLAPQHYAVFEHRGSLECIKTTFDAIFTQWLPA 129 Query: 121 SAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAVQ 153 S FE Y +E+++ ++ Sbjct: 130 SGKRQADAAVFERYPAGYDPTAPQALMEIWIPLE 163 >UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7H0_9BACL Length = 301 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 20/168 (11%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLM--MWVD--SKNIVPKEWVAVY 51 M Y I+Q + + GF + G + + +++ M W + P + V Sbjct: 135 MQYRIEQIPAKRILGFAIQTTTEDGQNHKDIPAFWQKYMHEQWGSRVPGKLHPNVELGVC 194 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVAR--VVGD---DF 106 R V + EG+ + YA+ D Sbjct: 195 T---ALDEDGTFRYIIGFEVDETTEV---QEGLTEYRVPAQTYAIFTTPPAGEADFSSSI 248 Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 + W + F S S YE + P FE Y I++Y+ VQP Sbjct: 249 QQTWDEIFTSWFPTSGYEQVAAPDFEWYDERCWPKEGKQIDIYIPVQP 296 >UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL Length = 290 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 13/164 (7%) Query: 2 NYEIKQEEKRTVAGF--------HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 I + E V G L + Q V + + +L V+ + +++ V Sbjct: 124 EVRIDEREPFLVKGMTSEISGLFSLTQDFAQKVPQLWSRLEGEVEIPDANMLQFIGVVDL 183 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENS----EGVILTEITGGQYAVAVARVVGDDFAKP 109 + V + ++P+ + + + I YAV R + Sbjct: 184 TQSCFDGTNIYYWAGVELHDEISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPIEHLPHT 243 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDG-YWDIEMYVAV 152 F + L +S Y + E+Y ++E +V + Sbjct: 244 LSWFVLNWLPNSGYRGVDGYELEMYPFGYQAHASDAEMEYWVPI 287 >UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FQG5_METHJ Length = 279 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 12/147 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD--SKNI----VPKEWVAVYYDNP 55 +K E V G +E+ + K L + + + + ++ +Y+D Sbjct: 127 EPTLKDIESLRVLSIRDKGTYEEVIPKLIGTLCQYFSSPQRGLEQVSITGPFMTIYHDG- 185 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + D V VP LP+ G+ + + GG++A A+ + D + W + + Sbjct: 186 ---EYRESDADVEVAVPVTGRLPDQIPGITIRTMPGGRFASAIHKGPYQDAHESWGKLY- 241 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDG 142 YE PC + YLN+ + Sbjct: 242 EWTAKQGYEPK-APCRDNYLNDPDDVP 267 >UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR Length = 284 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 6/158 (3%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDET 58 M EI + + G E ++ + + + D+ N V E+ +Y Sbjct: 129 MEPEIITQPAIKLVGIANQYTDEDLSLPRLWSGFAPYRDTIANRVGDEFFGIY---ESYE 185 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 AE+ + + EG+I E+ YA + + + S L Sbjct: 186 EAEEGTTFVYICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLRYIWGSWL 245 Query: 119 QDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAVQPK 155 SAYE KP FE+Y + D + + + V+ K Sbjct: 246 PKSAYEYEEKPDFELYPAGFNDADPENKLYLNIPVRKK 283 >UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium botulinum RepID=B2TL55_CLOBB Length = 282 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 20/165 (12%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM-----WVDSKNIVPKEWVAV 50 MNY+I ++E V G G + V + + M W+ SK + + + Sbjct: 127 MNYKIVEKESFRVVGKQTRITMVDGENFEQVPEFWNNCMKDGSYNWICSK-VGKLGVLGI 185 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 D ++ V +G + I +A+ + D Sbjct: 186 CKDFGK----DEFNYMIGVE----EIKDSIPKGYVSATIPAATWAIFESSGALPDAIQDL 237 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 + F L + YE P E+Y + E+++ ++ Sbjct: 238 TRRIFTEWLPSTGYEHACAPELEIYPEGDIYSSDYKCEIWIPIKK 282 >UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria RepID=A6UD97_SINMW Length = 279 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 10/156 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59 ++ +AG + + + +++ + + V + Sbjct: 128 PRFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFGNIPGQRGNTAYGVCTQSDG--E 185 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A + R + LP G + +YA+ V R + A + F + Sbjct: 186 AGRFRYMAAAEIRDNEALPA---GFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTWFP 242 Query: 120 DSAYEMLPKPC-FEVYLNN-GAEDGYWDIEMYVAVQ 153 +S Y P E Y G +EM+V ++ Sbjct: 243 ESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLK 278 >UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LX8_CLOAB Length = 288 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 16/167 (9%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM----WVDSKNIVPKEWVAVY 51 MNY+I+ ++ +AG G + + + ++++ + KN + V Sbjct: 128 MNYKIETKKSFKIAGVSKRISTKEGNNFKIIPEFWDEVKKSGQCEIIEKNAGKLGVMGVC 187 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110 + E ++ V E + ++ E+ +AV + D Sbjct: 188 TNFDCEY--QEFDYLIAVE----GDKIEGLDNYVVIEVPELSFAVFESIGPMPDALQDVT 241 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 + F+ + YE P EVYL +D + E++V V K Sbjct: 242 RRIFSEWFPATKYEEAEGPEIEVYLPGNPQDKDYRAEIWVPVVEKRK 288 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 5/155 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 +++ VA F G +T+ ++ + W + + P+ +++ Sbjct: 144 QVALREVAPTRVAIFEHRGD-PETLDATIQRFIAWRKAAGLSPRTNPTFNIWHSERRPPD 202 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 D V V + +SE V EI GG+ AV + + L Sbjct: 203 PADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTHNLEPAALYLYRDWLP 262 Query: 120 DSAYEMLPKPCF-EVYLNNGAEDGYWDIEMYVAVQ 153 S EM P + + + + E G E+++ ++ Sbjct: 263 ASGEEMRDFPIYCQRFFLDAPEQGTAA-ELFLPLK 296 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 3/75 (4%) Query: 80 NSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN--N 137 + V L E+ + A+ R + +F + + P F ++ + Sbjct: 141 TPDQVALREVAPTRVAIFEHRGDPETLDATIQRFIA-WRKAAGLSPRTNPTFNIWHSERR 199 Query: 138 GAEDGYWDIEMYVAV 152 + + +++ V V Sbjct: 200 PPDPADYSMDLCVGV 214 >UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium RepID=A5HZP6_CLOBH Length = 278 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 7/152 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I+ V +G + + + M + + YD+P T E Sbjct: 134 KIIIENLADFKVIYERYIGNYID-IGDNWYSFMERYKTYIKPDTLLIEKSYDDPSITELE 192 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 K D +TV L +T I GG++AV D + FN L S Sbjct: 193 KCIYDLCITVGEDVELEN------VTTIKGGKFAVYRFNGYIHDIFVTFQGVFNIWLPRS 246 Query: 122 AYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 Y+M + +Y N ++ + +++ +A++ Sbjct: 247 GYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK 278 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 6/155 (3%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPKEWVAVYYDNPDETPAE 61 E+ + V GP T+ + F LM + +N V + V + +P + Sbjct: 145 VELTEIAPFDVLSLRHDGPVA-TIGQTFRSLMTMLRCDENAVMDQRVGICVRDPAV--KD 201 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + E S+ V + GG YAV + + + L S Sbjct: 202 SFSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLIGPYALISPTFRALYGGWLPQS 261 Query: 122 AYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154 Y +P E+Y ++ + ++ Sbjct: 262 GYLRDRRPALELYRLPLVAGLQQTCVTDLMIPIRK 296 >UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K766_BACHD Length = 297 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 19/169 (11%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVD----SKNIVPKEWVAVY 51 M + + + G+ L G + + + ++ + + + + Sbjct: 130 MEPKFVTKPAFHIIGYELKTKNADGQNNKDIPEFWQHYLKNKLGCTIPNPLHKHVELGIC 189 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-----F 106 + + + V PE G++ +YAV ++ Sbjct: 190 TEF--NPETGEFVYVIGMEVEKGTKAPE---GMVYKSFPELEYAVFTTPKANEESFTSSI 244 Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 W F S YE FE+Y ++++Y+ V+ + Sbjct: 245 QSTWNYIFTEWFPQSDYEHNGVVEFELYDERCHGTENIEMDIYIPVKKR 293 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 6/157 (3%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59 N E+ + ++A G Q + + + + W ++ + P + Y +P Sbjct: 132 NVELIEFHTLSIAYLTHKGHPNQ-LHRSIQTFIDWRRARALPPHKSRTFNLLYHDPKRVE 190 Query: 60 AEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 E R D + + + + +I G+YA + D + Y FN L Sbjct: 191 PEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQLDQAIYYLFNLWL 250 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153 + S ++ P F ++ + ++Y+A++ Sbjct: 251 EQSGEKLRDFPLFIERVSFFPDVAANKAISDIYLALE 287 >UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHR5_HAHCH Length = 278 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 12/156 (7%) Query: 2 NYEIKQEEKRTVAGFHLVG-PWEQTVKKGFEQLMMWVDS-KNIVPKEW-VAVYYDNPDET 58 ++K+ T+ G ++ + + + D + V E + Sbjct: 128 EPQVKELPAFTLIGMEYRSSDVRDSIPMLWGRYLPREDEIRGRVNHEVSYGLCL----PL 183 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + R V V +PE G++ + +YAV + + + L Sbjct: 184 EDGEFRYIAGVEVEKGTPVPE---GMVSVTVAAARYAVLTHTGPVAGLNATFRKACSRDL 240 Query: 119 QDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152 +S E + P FE+Y G + +++Y+++ Sbjct: 241 PESGLERVDGPDFELYDRRFMGPDSAESQVDIYLSI 276 >UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=C6PVM8_9CLOT Length = 277 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 7/149 (4%) Query: 5 IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLR 64 I++ + V +G + + + K + + +YD+P T ++ Sbjct: 136 IQELDDFVVIYERYIGNYIE-LGKNWYDFTEKYKDYFKEDTLLIERFYDDPSITSLDQCL 194 Query: 65 CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYE 124 D +TV +L +T I GG++A+ + D + FN L DS YE Sbjct: 195 YDICMTVDKNCSLDN------VTTIQGGKFALCRFDGLIQDIFAAFQGVFNIWLPDSGYE 248 Query: 125 MLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 M + ++Y E + +++ + ++ Sbjct: 249 MDERYGLDIYRAIDWESMHVVMDLCIPIK 277 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 22/170 (12%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60 + E+ + V GP T+ + F LM + ++ V + + T A Sbjct: 154 SVEVVELAPLDVLCQRHDGPVG-TIAQTFRTLMTTLRCNQNPQLQQRVGICGRD--ATVA 210 Query: 61 EKLRCDTVVTVPGYFT----------------LPENSEGVILTEITGGQYAVAVARVVGD 104 R + + E GV+ + GG YAV + Sbjct: 211 SGFRYHAGIIAASQTAFSRAIERLDESAQQSCVTEPPPGVVPLRLEGGLYAVHRLVGPYE 270 Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAV 152 + + ++ L S Y +P E+Y + ++ + + Sbjct: 271 LISPTFRALYSGWLPRSGYRRDQRPGLELYRSLPDRGALQPCITDLLIPI 320 >UniRef50_A9KRS9 Transcription activator effector binding n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRS9_CLOPH Length = 160 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 19/165 (11%) Query: 1 MNYEIKQEEKRTVAGFHLVG-----PWEQTVKKGFEQLMM------WVDSKNIVPKEWVA 49 M Y I++ + +AG + + K +E+ V+ + Sbjct: 1 MKYRIEKMDGFRLAGISREITINNRENFKLIPKMWEEFNSDGTCDKIVNINGRKQEAMYG 60 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKP 109 V YD E+ R + EG + E+ + + Sbjct: 61 VCYDFH--FAEERFRYMIAIKSEDQIA-----EGYEVLEVPEFTWVKFECNG-VTGIQET 112 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 + + S YE P E Y + + E++V ++P Sbjct: 113 FKRMNTEWFLTSGYEHEEGPEIEFYPIGDVDAPDYVCEVWVPIRP 157 >UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas RepID=B0RPV2_XANCB Length = 319 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 53/156 (33%), Gaps = 8/156 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58 + ++ E V G ++ + +GF ++ W + ++ + V + + Sbjct: 164 LQVTVQWLEPLEVVVLRQRGAFDD-LDRGFGRIAAWAERAGVIEHLHALIGVPLSDHRDV 222 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 PA++ + + P + + + G +AV + L Sbjct: 223 PAQQHLFECGIAFATAVAPPAP---LHVRVLGEGAHAVLRHTGSYAGLEDALDRLLADWL 279 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 S + + P +YL++ D+ ++ V V Sbjct: 280 PGSGHALRDAPLHYLYLDDPETVAEADLRADIRVPV 315 >UniRef50_P96662 Uncharacterized HTH-type transcriptional regulator ydeE n=105 Tax=Firmicutes RepID=YDEE_BACSU Length = 290 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 18/168 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW-----EQTVKKGFEQLMMWVDSK-----NIVPKEWVAV 50 MNY I+++E + G P + +E L +K N+ P ++ Sbjct: 128 MNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVAPSGLISA 187 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 + + E D + P+N E+ +AV + D + Sbjct: 188 STNFSEGRTEENGELDHYIGAATTKRCPDN---FSRLEVPASTWAVFESIGPFPDTLQEV 244 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQPK 155 W + ++ S YE + P E+ N + + E+++ + K Sbjct: 245 WGRIYSEWFPSSNYEQIEGP--EILWNEHKDVTSPSFKSEIWIPITKK 290 >UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EC6 Length = 292 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 16/165 (9%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQ------TVKKGFEQLMMWVDSKNIVP-----KEWVA 49 MNY I ++ TV V ++ TV + + +V + Sbjct: 128 MNYRIIEKPAFTVIEKAEVHRLDENDVVSSTVPDVWAKAGADGTIAQLVGMASDREFIYG 187 Query: 50 VYYDNPDET-PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107 + Y N ET + PE G ++ I + + + Sbjct: 188 ICYGNGKETYDEDTFEYSIAAICAEDTVAPE---GFRISHIPARTWLAVECQGTCPETVQ 244 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + W + S S Y + EVY + + E++V V Sbjct: 245 QQWREMCASFFPSSGYTPTYEMDIEVYPSGDPSAPDYKFEIWVPV 289 >UniRef50_A6M032 Transcription activator, effector binding n=19 Tax=Bacteria RepID=A6M032_CLOB8 Length = 285 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 17/165 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDE 57 M+Y+I +++ TV G V +E + + + + K + D + Sbjct: 128 MDYKIVEKDSFTVMGVSKVFKYENAFAEIPPFWTE--HYEAGKGKFVCGMYGISID--ES 183 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNS 116 +++ +P G + I +AV + + F+ Sbjct: 184 MGSDEFEYLIADNYNPSIEIPN---GFVTKIIPKHTWAVFACKGAMPKSLQDMNRKIFSE 240 Query: 117 LLQD-SAYEMLPKPCFEVYLN-----NGAEDGYWDIEMYVAVQPK 155 L + YE+ E+Y + G +D + E+++ V+ K Sbjct: 241 WLPNCKDYEIAAGYNIEMYTDIADYPKGNQDENYYSEIWIPVKKK 285 >UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D8X3_9VIBR Length = 295 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 45/162 (27%), Gaps = 17/162 (10%) Query: 3 YEIKQEEKRTVAGFHLVGP----------WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYY 52 I+ + + G GP + Q V + +I P + Sbjct: 138 VRIESKPETQFWGV--YGPIDSIYAANPQFSQQVLDIWGTFTQIALQHSIAPNHFYYGIV 195 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 D P +L P + + + + I YAV F K Sbjct: 196 DTVRVLPNSQLVYWAASDNPAFSQISQ----LEHVTIPAQMYAVITHVGPAATFPKTLEW 251 Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGA-EDGYWDIEMYVAVQ 153 S L S Y L E Y + E +E ++ +Q Sbjct: 252 VLQSWLPSSGYMGLEGFELECYPRDYQLESHEAKMEFWLPIQ 293 >UniRef50_A5FHW5 Transcription activator, effector binding n=2 Tax=Flavobacteriaceae RepID=A5FHW5_FLAJ1 Length = 160 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 12/163 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVD------SKNIVPKEWVAVYYD 53 M I+ ++ + G H+ + + + + M N+ E + + Sbjct: 1 MEARIETLSEKKLIGKHIEMSFIENKTFELWSSFMPSRKNIKNTIDDNLYSLEVYTLDHF 60 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 + + P++ + V V T+PEN + + G YAV V + K ++ Sbjct: 61 D-NFDPSKTFQKWAAVEVQNLDTIPEN---LETLIVPDGLYAVFVHYGPASEAHKTYHPI 116 Query: 114 FNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155 F L +S Y + +P F V +D + E+++ ++ + Sbjct: 117 FTEWLPNSKYTVDNRPHFAVMDHKYKKDDPDSEEEIWIPIKNR 159 >UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CY04_9CLOT Length = 295 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 10/158 (6%) Query: 2 NYEIKQE-EKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59 + EI Q E+ +AG + Q + + ++Q + + + + ++ Sbjct: 140 SPEILQMTEEIKIAGLRDITSISQNRIPQLWDQFLRFHGDLYELTETAYSICETRQTAYA 199 Query: 60 AE---KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 + VP + LPE + T + G+YAV R + + + + + Sbjct: 200 EDGDVTFSVMVGSPVPDFSNLPET---LAQTTLRPGKYAVFTHRGSLEKLLQTYQYIYGT 256 Query: 117 LLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152 L S + + FEVY +D ++++Y+ V Sbjct: 257 WLPSSGQRLDDRDDFEVYERKVLAMQDPENEVKLYIPV 294 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 10/156 (6%) Query: 6 KQEEKRTVAGFHLVGPWE---QTVKKGFE--QLMMWVDSKNIVP--KEWVAVYYDNPDET 58 K ++ +G ++ + E QL +++ +W+ + D+PD T Sbjct: 136 KTISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLLEFHHKWIGISQDDPDVT 195 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + +R D T+ F P +G I GG Y ++ + N Sbjct: 196 CKDNIRFDLGFTISEKF--PSPPDGFGKQTIPGGNYLQIRYTGDYENLPMIYDWILNQYC 253 Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYW-DIEMYVAVQ 153 S ++ P +E YLN ++Y+ ++ Sbjct: 254 IVSKLKLKNNPPWECYLNPFEPIPDKRITDIYIPLE 289 >UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19 Tax=Listeria RepID=B8DCJ4_LISMH Length = 159 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 23/168 (13%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-----QTVKKGFEQLMMWVDSKNI-------VPKEWV 48 M EI + T G E + + + +++ D++ I + Sbjct: 1 MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGIL 60 Query: 49 AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107 V N +K+ + E + I ++A+ + + Sbjct: 61 GVCQMNG-----DKMDYYIAIESELT-----PPEDMEKLTIPASKWAIFKSVGPLPNAIQ 110 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 K W + Q S Y P EVY + E+++ V K Sbjct: 111 KVWEYIYGEWFQTSNYTHGNAPELEVYTEGDTTAADYYSEVWIPVVEK 158 >UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=A7GBT6_CLOBL Length = 289 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTV-KKGFEQLMMWVDS--KNIVPKEWVAVYYDN-PDE 57 IK + V G + + + P ++ + ++ P Sbjct: 133 QPVIKVIPEVKVIGIKGKTSLKNNLLPDLWSAFNKNSSKIVNKAEPLKYYGICENDRPTN 192 Query: 58 TPAEKLRCD--TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 E + + V + +PE G++ I G+Y V + + + + Sbjct: 193 QFGENVAYSEIVGIEVTSFDYIPE---GMVAKVIPQGKYVVFTHKGSIHKLQETYEYIWG 249 Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + + S E+ + FE+Y GA + +I++Y+ ++ Sbjct: 250 TWIPFSKVELDMRDDFELYDEGFKGANNHLSEIDIYIPIK 289 >UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=Bacteria RepID=A9KRP2_CLOPH Length = 292 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 27/170 (15%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT---VKKGFE---------QLMMWVDSKNIVPKEWV 48 MNY+I Q V G + V + +E + + + + P ++ Sbjct: 128 MNYQIVQFPAFKVVGITNRINTSEAFKIVPQIWENAWKDGTMNRFIELLKKTDYRPAGFL 187 Query: 49 AVYYDNPDETPAEKLRCDTVVTVPGYFTLPE-----NSEGVILTEITGGQYAVAVARVV- 102 + D E D ++ + + +PE +G+ + V A Sbjct: 188 GICADGKWGNSEE---MDYILAITNHVDVPECNYVSPPDGMKEFCYPASTWVVFDADGEL 244 Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 K QF++ L +S YE+ P E Y+ N + E+++ + Sbjct: 245 PSAVQKIHKQFYSEWLPNSGYELADLPVIESYMQNNHQ------EVWIGI 288 >UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSY0_DESHD Length = 291 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 13/162 (8%) Query: 2 NYEIKQEEKRTVAGFH-LVGPWEQTVKKGFEQLMMWVDS--KNIVPKEWVAVY---YDNP 55 + +I + + VAG + +++ +++ I + +N Sbjct: 133 HPKIVELPEIKVAGLRGETTLRDNRLRELWDRANSLYIQIPNRIPNGRAFGICEACAENT 192 Query: 56 DETPAEKLRCD--TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 T + + + V + L E + I GG+YAV R + + Sbjct: 193 LYTMNDDILFTEVAGIEVSSFAGLTEP---FVQKIIPGGRYAVFTHRGTLGMLPQTFDYI 249 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + + + EM + FE+Y G + ++++Y+ ++ Sbjct: 250 WGTWFLTTKEEMDWREDFELYDERFLGYDHPDSEVDLYIPIR 291 >UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMK3_9FLAO Length = 159 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 22/167 (13%) Query: 1 MNYEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAV--YYDN 54 MN ++ Q ++ + G G + + +++ M KN V E++A+ Y D Sbjct: 4 MNPKVIQISEKNLIGMKSTMHHGQFSN-IVTLWKRFMPNRRIIKNAVNNEFIALQEYIDF 62 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 + + V + +G+ I G YAV + + + K + + Sbjct: 63 NNF--EAAFDIWACIEVTNLDDIT---DGMETFTIPEGAYAVFLQKGMDAS--KTYQKIM 115 Query: 115 NSLLQDSAYEMLPKPCF----EVYLNNGAEDGYWDIEMYVAVQPKHH 157 L S Y + +P F E Y N + + YV V+ KH Sbjct: 116 TEWLPTSGYIIDDRPHFQVMGEKYKNGSPDSEE---DFYVPVR-KHQ 158 >UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCB74 Length = 167 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 11/160 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQL--MMWVDSKNIVPKEWVAVYY---DNP 55 IK+ EK V G E + +E+ + + + K + + Sbjct: 11 KPVIKEIEKIKVIGIKDKVILENNSLPDLWEKFRKVHHIVPNTLPSKRVFGICEAISEIH 70 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + + + + V Y +P + + I G+YA+ D+ K + + Sbjct: 71 LVSESMEFNEIIGLEVNSYDVIPNS---FVSKTIKEGKYAIFTHTGSLDNLDKTYEYIWG 127 Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + S E+ + FEVY G + I++Y+ ++ Sbjct: 128 TWFLSSKEELDIRDDFEVYDERFLGPSNVNSQIDIYIPIK 167 >UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8P4_GEOSF Length = 221 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 8/157 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDS-KNIVPKEWVAV--YYDNPD 56 M I+ E + + G H + + + M K+ +++++ Y + Sbjct: 66 MEPRIEILEPKKLIGIHKKMSLSNNKTAELWREFMPRRMEVKDRSTTDYISMQKYDNCWT 125 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 +P V V +P + + + GG+YAV A + Sbjct: 126 FSPDAVFEKWATVEVSSLEEIPTS---METYLLQGGKYAVFTHHGPASAAAGTFQYILGE 182 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAV 152 L S+Y + + FEV D E++V + Sbjct: 183 WLPKSSYNLDDREHFEVLPEGYNPIDPEAKEEIWVPI 219 >UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZPC8_9SPHI Length = 159 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 11/158 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDS-KNIVPKEWVAVYYDNP----- 55 I + + + G H + ++Q M V + + ++ P Sbjct: 4 PSITEIPECKLIGMHTDLSLIDNKTQSLWQQFMPRRQEVHQRVGQSFYSMQVYAPGFSMQ 63 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + TP V V + +P+ G+ + G+YAV + + F + F Sbjct: 64 NFTPHTVFTKWAAVEVSSFENVPK---GMHAFTLPSGKYAVFIHKGPASAFKPTFDYIFG 120 Query: 116 SLLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAV 152 L SAY + +P FE+ D + E+++ + Sbjct: 121 EWLPKSAYTLDQRPHFELLPEGYVPTDPNAEEEVWIPI 158 >UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes RepID=C1FU00_CLOBJ Length = 290 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 22/168 (13%) Query: 1 MNYEIKQEEKRTVAGFHL-----VGPWEQTVKKGFEQ------LMMWVDSKNIVPKEWVA 49 MNY I++++ + G + +TV K + + + +P + Sbjct: 134 MNYRIEKKDSFRIVGISEPLETEMEKNFETVPKMWGTAAMNGTIPRLAAMMDGIPMGLLG 193 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKP 109 V + R V G+ + +A+ + + Sbjct: 194 VS----SCNNLDNWRYYIAVASSQPIE-----NGLEEYIVPSSLWAIFSGKGTAKSMQEL 244 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 + L S YE P EVYL ED + E+++ V K + Sbjct: 245 EKRIITEWLPTSGYEYGNAPDIEVYLKADPEDTEY--EVWIPVLKKEN 290 >UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8 Length = 290 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 13/163 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVK-KGFEQLMMWVDSKNI--VPKEWVAVYYDNPD- 56 + EI + + V GF E+ + +E+L ++ + + ++Y + Sbjct: 131 LQPEIVTFQPKCVVGFRYYMSIEKNNSIEMWEKLNAQLEKQKYISMNNNRYSIYETSGTC 190 Query: 57 ----ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 + + +PE G+ L EI+GG+YA V + + ++ Sbjct: 191 LQNTFNKNSETTLFIGIETSDDNNIPE---GMELKEISGGKYAKFVHKGTVKNLISTYHY 247 Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + +S++++ + E Y GAED IE+Y +Q Sbjct: 248 IWGVWFPNSSFQLDDRDDLECYTEKFLGAEDEESQIEIYFPIQ 290 >UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio RepID=B5EUU0_VIBFM Length = 299 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 13/161 (8%) Query: 3 YEIKQEEKRTVAGF--HLVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDN 54 ++ + V G L G + + V + L + +P++ AV + Sbjct: 140 VRLEYKPSFKVLGLSTRLQGILSDTPDFNEKVPSVWNALDTSIVYLPSIPEQKYAVI--D 197 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENS--EGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 E A+ L + T N + + I +YAV + DF+K Sbjct: 198 TREENADSLLYWAGINCEALSTDELNQHKADLQIITIPEQEYAVLPFKGAAQDFSKSVEW 257 Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + L S ++ + E+Y ++ + G D+E ++ ++ Sbjct: 258 LISEWLPTSGHQGIEGFDLEIYQSSTTQ-GVIDVEYWLPIR 297 >UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5 Length = 307 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 7/155 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 + ++ +RTV + P+E+ V+ +L+ W + +W+ +D P A Sbjct: 147 SVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAGVEHHQWLGYLWDQPRLASA 206 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 R D V V + + + A V R + + ++ L Sbjct: 207 ADCRYDVAVEVTHGRH----CGEIGVFRFPPMKVAEVVIRGGLALEMRAFGWVRDTWLPA 262 Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEM--YVAVQ 153 S Y P FE +L G E+ + ++ Sbjct: 263 SGYLPTDLPAFEAWLGLPYAHGAEHFELACQIPIR 297 >UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGS4_AGRT5 Length = 274 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 13/154 (8%) Query: 3 YEIKQEEKRTVAGFHLVGP--WEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59 E+++ + V G T+ +++ + + +V V Sbjct: 128 PEMRRADAFMVVGLSTPCSLENNSTIPALWQRFNLRESEVEEVVSGAAYGVC---SAADE 184 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A V + G+ E+ YAV D + Y +N L Sbjct: 185 AGNCTYLAGV------KALTKTPGMDYIELPAQSYAVFTHNGHISDLPRTVYTIWNKALP 238 Query: 120 DSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAV 152 ++ + P FE Y E G +E+++ V Sbjct: 239 EAGLKTADSPDFERYDQRFNPETGRGSVEIWIPV 272 >UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26725_METTH Length = 173 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 9/156 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59 M K E VA G + + + + ++ WV + + YY+ P+E Sbjct: 21 MEISEKMVEGIRVAYIECRGSY-ERIPEYISEVAGWVLKNGLQMTGRVYGTYYNTPEEVD 79 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+L + V++ G E E V + + + A+ + + Sbjct: 80 EEELLYEIGVSIAGEA---EADERVKIKNLPSHRVIAALHEGPYTEVGPVIHALI-EYAM 135 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 ++ YE+ P EVYLN+ E ++ E+ + V+ Sbjct: 136 ENGYEIT-GPVTEVYLNSPLEVDESELLTEVQIPVK 170 >UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas RepID=B8L7S8_9GAMM Length = 285 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 16/159 (10%) Query: 3 YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLM-MWVDSKNIVPKEWVAVYYDNPDETP 59 + VAG + + QL W I V ++ Sbjct: 137 PRLLDTPAFQVAGIGMRHTRDSGGAIPGQWAQLNREWPAPAPIS----FGVCCNSD---D 189 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + T+P + + +Y VA W+ + L Sbjct: 190 EGGFDYIAALPASALSTVPAH---WQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYLP 246 Query: 120 DSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAV--QPK 155 + + P E Y E G +E+++ V +P+ Sbjct: 247 GTGLSLADAPDLERYDTRFDEHTGNGGVEIWLPVDQRPR 285 >UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TVN7_9FLAO Length = 165 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 12/161 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSK-NIVPKEWVAV--YYDNPD- 56 + I ++ + + G T + ++ + N + +V Y D+ Sbjct: 8 SPVIVEQRELILVGLQATMSLAHNTTMQLWQAFGPLRRTILNKSNRGSYSVQCYADDFMT 67 Query: 57 --ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 TP K V V +P + + +I G++AV + DF + Sbjct: 68 TPFTPETKFVKWAAVAVTTENDIPNQ---LEVLKIPKGKWAVFPYKGTTRDFGVFAQYIY 124 Query: 115 NSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + L +S Y++ +P +E + G + + E+++ ++ Sbjct: 125 SQWLPNSGYQLDDRPHYEFMPEDYLGPNNPQSEEEVWIPIK 165 >UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseudomonas fluorescens RepID=Q4K7X3_PSEF5 Length = 162 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 8/142 (5%) Query: 14 AGFHLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVP 72 G Q + +++ + + V ++ + NPD V + Sbjct: 25 LGERFTPATRQDIGLLWQRFVPHIGKVPGQVDRKTYGICC-NPDG--QGGFEYIAGVEIS 81 Query: 73 GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFE 132 LPE + + YAV D + + +N+ L S E P FE Sbjct: 82 KLDDLPERYRWIEVQ---PQHYAVFEHGGALQDLPRTFDYIWNTWLPQSGREAADAPEFE 138 Query: 133 VYLNN-GAEDGYWDIEMYVAVQ 153 Y + + G +E+++ ++ Sbjct: 139 RYSADFNPQAGTGVLEIWLPLK 160 >UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSU9_9VIBR Length = 310 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 13/165 (7%) Query: 2 NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 ++ + + + G H + G ++Q V + +L + + P V Sbjct: 142 EVRVESKNEFFLKGLHGEINGLFALNPDFQQKVPALWHRLEQTLPDEPERPVALTGVIDI 201 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSE----GVILTEITGGQYAVAVARVVGDDFAKP 109 + V + LP+ + + YAV K Sbjct: 202 TQSHFDGSNMEYWAGVELTDDLLLPQLPSAISSELSTLVVPAQTYAVVKHCGPVVHLPKT 261 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAVQ 153 F + L +S Y + E Y N + D +E ++ V+ Sbjct: 262 LEWFLLNWLPNSGYRGIDGYELECYPANYNQHDTDAVMEYWIPVE 306 >UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP62_CLOCL Length = 292 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 16/167 (9%) Query: 1 MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM------WVDSKNIVPKEWVA 49 MNY+I ++E + G G + + + + + + + + Sbjct: 128 MNYKIIEKEPFKIFGKDFKTNIIGGRCFSEIPEFYAKCISDGTSAKIIRNAGKPENGILD 187 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAK 108 V +R V T + EI +A+ +D + Sbjct: 188 VGVLFNHNPQDGSMRYMIGCDVTD--TNTNILTEFRILEIPSLTWAIFEVENNSDEDIHE 245 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 W + + S+YE P E Y G D E+++ V K Sbjct: 246 MWRRIGSEWFPASSYEHADAPEMERYY--GNNDTGCRCEIWIPVIKK 290 >UniRef50_C3JZ42 Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3JZ42_PSEFS Length = 170 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 16/158 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT----VKKGFEQLMMWVDS-KNIVPKEWVAVYYDNP 55 + ++ + +AG G + + + K +E + K V V + NP Sbjct: 19 LEPRMEAGKALVIAGV--QGRYSKATVGDIPKLWELFDTCIKDIKKRVGGVTYGVCH-NP 75 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + V VP +P N E + EI YAV + + + Sbjct: 76 K---HGEFDYMAGVEVPTKGDVPSNFESI---EIPPLNYAVFPHYGPVQALEQTYERIMF 129 Query: 116 SLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAV 152 L S Y+++ FE Y + G +E+++ V Sbjct: 130 EWLPHSGYKVMGA-DFERYSADFDGRKGTGTVEIWLPV 166 >UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383DF5 Length = 139 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 10/145 (6%) Query: 13 VAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVT 70 +A G + + + + W + ++ P + + Y PD+ P + R D V Sbjct: 1 MAVMTHRGDPA-LIAETVGRFIAWRKANHLPPSQHATFNILYGGPDQVPPAEFRQDLCVA 59 Query: 71 VPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPC 130 G GV I GG+ AV D + L S E+ Sbjct: 60 TGGKAV--AFGSGVAAGIIAGGRCAVLRHVGPDDGLEAALTYLYGDWLSQSGEELRDSLP 117 Query: 131 FEVYLNNGAEDGYWD--IEMYVAVQ 153 F L E D +++++ ++ Sbjct: 118 F---LQRFPELAGHDSPVDIFLPLR 139 >UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio RepID=A7JZZ4_VIBSE Length = 310 Score = 98.8 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 13/165 (7%) Query: 2 NYEIKQEEKRTVAGFH--------LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 I+ + +AG+H ++ V + QL ++ + + ++ V Sbjct: 140 EVRIETKPAFVLAGYHEPIYGLFSATPNFQSKVPSLWSQLYS-SENHTHLERNYLGVIDV 198 Query: 54 NPDETPAEKLRCDTVVTVPGYFTL---PENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110 + ++L +++ L + YAV + A Sbjct: 199 TKAYSSNQQLEYWAGYEYNSASRTSIYKGSTQEPDLLVVPEQTYAVITHIGKASNLAATL 258 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQP 154 F L S Y + EVY + E + ++ V+P Sbjct: 259 EWFILHWLPYSNYHGIDGYELEVYPEDYDVESENAQMHYWIPVKP 303 >UniRef50_D2R723 Transcription activator effector binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R723_9PLAN Length = 155 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 9/156 (5%) Query: 1 MNYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDE 57 + + AG + + + Q + V + + Sbjct: 3 LTPVFRDVPAMRWAGIMRRYSMESRCEIPQLWGQFAPHIGQIPGQVGRRSYGISV----L 58 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 D + V + + +G+ I ++AV + + + Sbjct: 59 VSGTDCDFDYMAAVEVHSSAEIP-DGMAEFAIPPQKFAVLLHTGHVSELPGFIDAIYRQW 117 Query: 118 LQDSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAV 152 L S P PC E Y E +E++V + Sbjct: 118 LPTSGLRTAPGPCIECYTEEFCGEKMIGGMEIWVPI 153 >UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YJ67_9FLAO Length = 274 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 14/158 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58 + EI + V + + + ++ +E+ M + + E+ V D P Sbjct: 126 LEPEIVYLKPMQV-YYQSTNTYYNNEEIEVLWEKFME--NKFHDSGTEYFGVIADEPLIK 182 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 R D ++ + I GG+YA + + + + + ++ + Sbjct: 183 TEISCRYDACSSMQSENKK------LPSKIIFGGKYARFIHPGSYETIDETYTKIYSRWI 236 Query: 119 QDSAYEMLPKPC---FEVYLNNGAEDGYWDIEMYVAVQ 153 S E P +E Y + + + + ++ Sbjct: 237 FHSELEFSHTPIIEKYERYSEHAENEEEQLTYILLPLK 274 >UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11SS0_CYTH3 Length = 163 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 18/168 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDS------KNIVPKEWVAVYYD 53 M I+ + + G + + ++ M ++ ++ A + Sbjct: 1 MESRIEILSPKKLIGMRMSMSFADNKTGILWKNFMSRKHEVTHTAGTDLYSIQFYAAGF- 59 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 P + V +PE G+ E+ G Y V + + + A + Sbjct: 60 FSAFNPRAHFDKCASIEVTSMEAIPE---GMEYIELPAGLYVVFLYKGDARNAAAVFQYI 116 Query: 114 FNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPKHH 157 + L S YE+ +P FEV Y + + E+++ V+ K+ Sbjct: 117 LGTWLPASPYELDIRPHFEVLGETYKKDDPDSEE---EIWIPVRDKNK 161 >UniRef50_A3XLX8 Probable transcription regulator, MerR family protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XLX8_9FLAO Length = 161 Score = 98.4 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 16/166 (9%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDS-KNIVPKEWVA--VY---YD 53 M EI + E R + G + ++ M KN V + + VY + Sbjct: 1 MKPEILEIEPRKIIGKCVTTTLSFDDTAALWQDFMSRHKEIKNCVDSGFYSMQVYPSGFK 60 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 + T + V V + T+PE G+ I GG YAV +F + Sbjct: 61 VEEFTRETEFERWAAVEVTDFDTVPE---GMQTKTIAGGLYAVFTHVGPVKEFVETSNYI 117 Query: 114 FNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155 + + L S Y++ + FE Y G E + E+++ +Q K Sbjct: 118 YGTWLPQSGYKLDKRAHFERLGEKYY--GPEHPESEEEIWLPIQLK 161 >UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=Methanomicrobia RepID=A3CSG8_METMJ Length = 286 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 14/160 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN------IVPKEWVAVYYDNP 55 IK G +++T+ + +L +V ++ + + + +D Sbjct: 127 EPVIKDIPTVRALSLRERGIYQETIPRMIRELFTYVCPEDGRQPAARIAGPIMFICHDE- 185 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + D V VP ++ + V + + GG++ + K + + F+ Sbjct: 186 ---EYRETDADIEVAVPITGSVSLDGTAVEVVNLPGGRFLSVLHTGPYPGVGKAYERLFS 242 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 + + P E+YLN+ AE ++ E+ V+ Sbjct: 243 -YMNEHRLVPS-GPSRELYLNDPAEVPEEELLTEVQSPVK 280 Score = 50.7 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPAE 61 E+ GP+ V K +E+L +++ +VP +Y ++P E P E Sbjct: 211 VEVVNLPGGRFLSVLHTGPYP-GVGKAYERLFSYMNEHRLVPSGPSRELYLNDPAEVPEE 269 Query: 62 KLRCDTVVTVPGYFTLP 78 +L + V P Sbjct: 270 ELLTEVQSPVKDLPPSP 286 >UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croceibacter atlanticus HTCC2559 RepID=A3U5E2_9FLAO Length = 165 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 12/164 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMW---VDSKN---IVPKEWVAVYYD 53 M I+ + + G H T ++ +++ M + ++ + E Sbjct: 6 MTPRIETLKPTVLVGMHNTMSIAANTTQQLWQRFMPKHKSILNRGDAILYSAEVYPSVDY 65 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 P + + V V ++PE + +++ G YAV + D K + Sbjct: 66 FKSYNPEAEFQKWAAVAVHSSQSIPETMDMLMVQ----GDYAVFTYTGLASDVYKAYQFI 121 Query: 114 FNSLLQDSAYEMLPKPCFEVYLN-NGAEDGYWDIEMYVAVQPKH 156 ++ L S Y++ +P F + D E+++ +Q K Sbjct: 122 YSKWLPASKYKLSNRPHFAKMDSTYNPNDPSSQEELWIPIQLKE 165 >UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EE80 Length = 285 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 23/169 (13%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKG------------FEQLMMWVDSKNIVPKEWV 48 MNY I++ + +V GF ++ ++ F++L + + + + Sbjct: 128 MNYRIEEMKAFSVVGFKKQVSTQRAYEEVPFLWKDAHAEGIFDKLWNY-RAHEHPIRGIL 186 Query: 49 AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAK 108 V D D E + + E ++L +AV A+ Sbjct: 187 GVCAD-GDYGKNEYFDY-----IMSVVSTHNPPEPMVLRHFPAAAWAVFELEGDPKGIAE 240 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 W + + + AY++ P P E YL + E+++ V K Sbjct: 241 MWKRLYTEWIPSHAYDLAPLPAIECYL----PPDEYKNELWIPVIRKTQ 285 >UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4Y4_9SPHI Length = 278 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 12/156 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59 + +I TV + T ++ ++ + + ++ + D P Sbjct: 130 LQPQIIYVRPTTVYYRSSFINYIDTEIESQWDTFLQNEFPEQ--GNDFYGIVADEPLIRE 187 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 R DT ++ + + I GG+YA + + Q ++ + Sbjct: 188 NLNCRYDTCSSLQSLTS------RLPSKTIGGGKYAQFTHYGRYETIEDTYSQIYSGWIL 241 Query: 120 DSAYEMLPKPCFEVYLNNGAED---GYWDIEMYVAV 152 + P E Y + +++ + Sbjct: 242 TAGLRFSHTPVIEKYTRHPDNTDSVEEQITYIWLPL 277 >UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q46A44_METBF Length = 321 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 9/155 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59 M ++K E+ VA G + +++ +L W+ K + + + AVYY +P E P Sbjct: 1 MEIKLKIVEEHQVASISHEG-LVEEMEEIIGELAGWIKQKRLKITQPPFAVYYTSPTEVP 59 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 EK++ + + G E V + + + A+ + + + + + Sbjct: 60 PEKMQYEIGIPFQGD---TNGDERVKIKIMPKHKILSAIHKGPYAEIGSLYAEMM-QHII 115 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 +S YEM+ P E Y+N E ++ E+ V Sbjct: 116 ESGYEMIGAP-REAYINTPREVPDNELLTEVVFPV 149 >UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI n=2 Tax=Lactobacillus rhamnosus GG RepID=C7TEN0_LACRG Length = 151 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 10/157 (6%) Query: 1 MNYE---IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV-AVYYDNPD 56 M Y I+ ++ VA F +GP+ K WV ++ + + + DNP Sbjct: 1 MEYRKVHIEYMKETNVAYFRRMGPYGSENGKLMHSFKQWVKAEGLFEGSTILGIALDNPQ 60 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 P R D + + + + + +YA+ + + + N Sbjct: 61 NVPDANCRYDVCLIINKE---HLKNNRIKQRPLPSIKYAIFKIPHTEIAINEFYKKL-NQ 116 Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 ++ + ++L KP E Y G+ E+ + ++ Sbjct: 117 IICEKQLKVLNKPIIERYKQKLVSLGF--CEILIPIE 151 >UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aeromonas RepID=A0KIR8_AERHH Length = 155 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 10/156 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 I+ + G + + + + V A Sbjct: 5 IRIETGLPMLLGGLRRHHAFAHADFGGQWRDFCALGPLPGQLGEHAYGVI----CGVTAT 60 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 + V V LP+ + I YAV + + W Q L S Sbjct: 61 ECEYLCAVEVAALEVLPKTLGRM---RIEPQTYAVFLHQGHVSAMPHTWQQAL-DWLAQS 116 Query: 122 AYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQPKH 156 AY+ KP FE Y E G ++E+++AV P+ Sbjct: 117 AYQSAHKPDFERYGAAFDPETGSGEVELWLAVLPRQ 152 >UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bacteria RepID=B0S9N2_LEPBA Length = 158 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 17/165 (10%) Query: 1 MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVD-SKNIVPKEWVA--VY-YDNP 55 M + I EK+ + G + ++ + + +N +E+++ VY D Sbjct: 1 MEFNIITLEKKWIIGKSVEMSLVANQTPDLWKSFLPNIQVIQNRTSQEFISASVYPLDYF 60 Query: 56 DETPAE-KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114 + + K + V V + +G EI G Y+V + + + + + F Sbjct: 61 QQFDPKCKFQKWAGVEVSAVTNV----DGFNQLEIPSGLYSVFLYKGLPSEAGAFYQNLF 116 Query: 115 NSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155 + L +S Y++ +P FEV Y N+ +Y+ ++P+ Sbjct: 117 MNWLPNSGYQLDNRPHFEVMGERYRNDDPSSEEL---VYIPIKPR 158 >UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJ15_CLOCL Length = 290 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 22/164 (13%) Query: 1 MNYEIKQEEKRTVAGFH---LVGPWEQTVKKGF-----EQLMMWVDSKNIVPKEWV--AV 50 MNY I +E+ T+ G +T+ + E++ + + + +V Sbjct: 134 MNYRIVEEDALTLFGISLTTRREESFETIPDFWNKCEEERITYKIVEAGHGNERTLLKSV 193 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVA--VARVVGDDFAK 108 YD E ++ + +P S+ + I +AV V D Sbjct: 194 LYD----MDNEMMKYMIGLDMPE----EGVSDEFEVVTIPAKTWAVFPLVLEKPEDSITS 245 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 W + F +S YE+ E +DG +E +V V Sbjct: 246 IWKRIFTEWFPNSGYELDEGSWQERCH--WRDDGKMIVEAWVPV 287 >UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KJN2_AERHH Length = 325 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 46/163 (28%), Gaps = 19/163 (11%) Query: 2 NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPK-EWVAVYY 52 I+ + G + G ++QTV + L + + P E V V Sbjct: 171 QVRIESPPGFILQGVKGQIRGLFAAAPDFQQTVPAIWRALRT---AGGLPPGQERVGVV- 226 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 E L + +LP G+ + YAV + Sbjct: 227 --DVSGAGESLPYWAGSVMEEGASLPA---GLARLPVPAQTYAVLSHVGPVSQLGQTLNW 281 Query: 113 FFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQP 154 F L S Y L E Y + +E ++ V P Sbjct: 282 FIQHWLPSSGYRGLDGFELERYAPDFDGNQPDARMEYWLPVAP 324 >UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=1 Tax=Moritella sp. PE36 RepID=A6FJ46_9GAMM Length = 312 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 24/175 (13%) Query: 1 MNYEIKQEEKRT------VAG--FHLVGPWEQTVKKGFEQLMMWVDS-----------KN 41 + I+ + T V F L ++Q V K + + + + Sbjct: 141 LQIRIETRPEFTLHCTSGVISGLFSLEPNYQQQVPKIWSEFIYNLPEVEKTSVLSEVSSK 200 Query: 42 IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV 101 + E + V + T + ++ +YAV Sbjct: 201 HMDIELIGVVGVIDANDDMNAIPYWAGSTAGALLGTTS----LDTIDVPAQEYAVIPFTG 256 Query: 102 VGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQPK 155 + F+ + DS Y+ + E+Y N ED +E ++ ++P+ Sbjct: 257 PIKQLEQVLAWLFSHWIPDSNYDSVDGYELEIYPVNYDPEDSSSYMEYWLPIEPR 311 >UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=Q24TQ4_DESHY Length = 305 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 19/169 (11%) Query: 1 MNYEIKQEEKRTVAGFHLVGP------WEQTVKKGFEQL-----MMWVDSKNIVPK--EW 47 M+Y I++++ + + + + Q M + Sbjct: 141 MDYRIEKKDAFKIICKKKQVNKPQGDSATEEISAFWNQCTKDGTMEDICKYGRFDGLGGV 200 Query: 48 VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107 + + + + G +P + EG+ + EI +AV + + Sbjct: 201 LGICFS--GDMADAAFPYGIGAEYNG---VPLHGEGLEILEIPPYTFAVFQCKGPMPEVF 255 Query: 108 KP-WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 K + + S Y+ EVY + + + E+++AV K Sbjct: 256 KTTYQRIVTEFFPQSNYQYGNGVELEVYPSADVSNPEYTCEIWIAVNEK 304 >UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staphylococcus RepID=B9CPS5_STACP Length = 165 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%) Query: 1 MNYEIKQEEKRTVAG-FHLV---GPWEQTVKKGFEQLMMWVDSKNIVPK------EWVAV 50 M+Y I+ E V G + G + + +E + + ++ K + V Sbjct: 11 MDYRIENIESTKVIGAYRHYKSGGHAQSNIPDFWEDVHTMKLDERLLQKSDNQLNGLLGV 70 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 P E D + V + + +G+ + GG+Y V A+ + Sbjct: 71 CL------PKEDRTMDYAIGV---TSTEDPHDGLETFNLEGGKYLVVEAKGPVPKSVQQT 121 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + L+ E+ P FE+Y + + E+++ +Q Sbjct: 122 MNDIHHELIPRENIEIKQAPFFELYGPGDTQSESYVTEIWMPIQ 165 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 95.0 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 7/155 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 ++ + +A G + V K Q + W P + + Y++P + P Sbjct: 198 QIQVIDFPRTAIAFLTHEGD-PEGVMKTVAQFIQWRKQYGPSPRTSKTYNILYNDPRDVP 256 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E+ R D ++ + N V I G+ A ++ + + ++ Sbjct: 257 KEEYRFDVAASIRK--VVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISL 314 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 + YE+ P F + + + ++Y+ + Sbjct: 315 NEDYEIRNAPLFVERVQGFPDVPENETIIDIYLPI 349 >UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YQP0_9CHLB Length = 161 Score = 95.0 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 11/147 (7%) Query: 10 KRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCD 66 + G + ++ + + +E + V + A + Sbjct: 14 PMLLGGLRCYHLYTESSRSIPEQWEAFRALGRIPGQTGSAFYGVMCGH----DAGGIEYL 69 Query: 67 TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126 V V + LP + I +YAV W + + + Y Sbjct: 70 CGVEVDSFAGLPS---ELGRMRILEEEYAVFGHSGQISTIRTTWERILHEWFPNGGYRSA 126 Query: 127 PKPCFEVYL-NNGAEDGYWDIEMYVAV 152 KP FEVY G D+E+++A+ Sbjct: 127 NKPDFEVYDQRFDTRTGSGDVEIWIAI 153 >UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT Length = 290 Score = 95.0 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 35/174 (20%) Query: 1 MNYEIKQEEKRTVAGF-----HLVGPWEQTVKKGF---------EQLMMWV---DSKNIV 43 MNY I+++E +V G + G + + + + E+++ ++ Sbjct: 128 MNYRIEEKESFSVFGIDTILSKVDGECYKRIPEFWLKSIEDGTVERILKAADDGKQNMML 187 Query: 44 PKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG 103 ++N +P EG + +I +A+ Sbjct: 188 NAAMYG--HEN-----DGTYHYMLCHRIPQKGIP----EGFVQLDIPKLTWAIFPTEEHT 236 Query: 104 DD-----FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 +D W + + S Y+ P FE+Y G D + +E+++ V Sbjct: 237 EDKTSEKVQAIWERIYPEWFPSSGYQHADAPEFEMYYKVG--DNKYIVEIWIPV 288 >UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-binding subunit n=13 Tax=Bacilli RepID=C2HEQ6_ENTFC Length = 298 Score = 95.0 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 14/166 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKN---------IVPKEWVAV 50 M + I+++E+ V G P + + V + ++L+ + + P + + V Sbjct: 135 MEFRIEKKEQFYVVGVAKKVPVQFEGVNQEIQKLVQTITETQREEMHKLGDLYPHQVINV 194 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 Y + EK + + T + + I +A+ + Sbjct: 195 SYGFDGDRLEEKG--SLMHMIGFATTKENPYADLEMLAIEEHTWAIFPNKGPFPQTLQDT 252 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 W + + L S YE++ P + G + + E+++AV+ K Sbjct: 253 WGKIYAEWLPSSDYELVEAPEI-SFTKWGEDFSHVYSEIWIAVKAK 297 >UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=Methanosarcina RepID=Q465L3_METBF Length = 287 Score = 95.0 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 14/162 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDS------KNIVPKEWVAVYYDNP 55 IK+ + V G + T+ K ++ V S + V + + +D Sbjct: 132 EPVIKEIPEMRVISKREKGTFVATIGKLIGEICTSVGSPENQRNRVKVTGPVMFLCHDE- 190 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 +++ D + +P + + + + + V R + Q F+ Sbjct: 191 ---EYKEIGADIEIALPVSGRISVEDPKMEVKTLPAIRAISVVYRGPYPGVEAGYNQIFS 247 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155 +++ + P E+Y N+ E ++ E+ V ++ K Sbjct: 248 YARENNLETL--SPDRELYFNSPEEVPEEELMTEIQVPIREK 287 >UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VB55_9RHOB Length = 157 Score = 95.0 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 14/160 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWE----QTVKKGFEQLMMWV-DSKNIVPKEWVAVYYDNPD 56 N I + + + G VG + + K +EQ K+ V + Sbjct: 6 NAAIVESRAKLIIGL--VGDYSLDTRGEIPKLYEQFFAIRDGIKHRVSDVLYGISM---G 60 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116 P R + V LPE + + L + G+Y V R + + F Sbjct: 61 AKPDGSFRYGVGIEVEEAEDLPEGACEMHLVD---GEYVVFSQRTPIAELPARFDAVFAE 117 Query: 117 LLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAVQPK 155 L S + FE Y ++ EDG E++V V PK Sbjct: 118 WLPQSDFVQREGAVFECYPDDDSPEDGKMLYEIWVPVAPK 157 >UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LA7_SHEDO Length = 297 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 7/156 (4%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59 + +A GP + + W + + P + Y + P Sbjct: 144 KVTLVDLASIELAVVEHSGPVSNLHGSL-QAFIGWRRAMHTPPLVSRSFNLVYHDVKHVP 202 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 A + R D + L G++ ++ G+YA+ + + L Sbjct: 203 ASEYRLDIGAEIG--RPLTAQDVGMVSKQLPKGRYALLAHTGNEASLGEAINDLYGQWLV 260 Query: 120 DSAYEMLPKP-CFEVYLNNGA-EDGYWDIEMYVAVQ 153 +S + P E +Y+ ++ Sbjct: 261 NSGEPLADFPLVLERVTQFPDVAQHKAVTHIYLGLK 296 >UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARB2_SEBTE Length = 285 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 19/163 (11%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW----EQTVKKGFEQLM------MWVDSKNIVPKEWVAV 50 M I ++ K V G + + K + + + K ++ + Sbjct: 128 MKNRIAEKGKLRVIGMKRTYKNVEEGMENIPKFWIEFNASKECTEMCSKMDGELKGFLGL 187 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 P ET A + + E + EI ++ + A+ + Sbjct: 188 CI--PHETGAG-YDYMICIN-----SSAEAGGELEEYEIPDAKWMIFEAKGKLPESVQSV 239 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 Q + +L S Y+ KP FE+YL+ E+ + E+++ V Sbjct: 240 TKQIYEEVLTGSEYKHDNKPDFELYLSGDIENEDYITEIWIPV 282 >UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGT3_9BACT Length = 318 Score = 94.6 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 19/165 (11%) Query: 3 YEIKQEEKRTVAGFHLV--------GPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYD 53 EI T AG + + +N+ + + + Sbjct: 156 PEIVSLPSTTFAGLQSRFLSATSDEANNMTVIPNLWNAFFERASELQNLTEGVYYGLS-E 214 Query: 54 NPDETP-----AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAK 108 NP+ ++ V +PE G+ GG +A + D + Sbjct: 215 NPEAINLARQHPDEAIYLAAAQVDPDAPVPE---GMHSWNSVGGLFAKFEHQGPVDTLGE 271 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAV 152 + +S Y+ P + + E++V + Sbjct: 272 TIAYIYGKWFPESEYKEREGPDINRFGPRFIPQSENSLFEIFVPI 316 >UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID=Q9K6U2_BACHD Length = 160 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 16/161 (9%) Query: 3 YEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58 + I ++ +R + G L GP+ + +E V + + ++ + D Sbjct: 9 FTIVEQNERKMIGLKLEGPYTRMNEIGMLWETFNQRVSEIDHLVQDDLSFGIVQD----- 63 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 V V + +PE G+ + +YAV + D F++ S L Sbjct: 64 RERDFTYYAAVEVSSFTKVPE---GMATIILPACRYAVFTHKGPQDKFSETVVAALKS-L 119 Query: 119 QDSAYEML-PKPCFEVY--LNNGAEDGYWDIEMYVAVQPKH 156 ++S YE E Y E + ++Y ++ Sbjct: 120 KESGYEKDSDNYWLEGYDDHRFSPELDNSECDIYFPLKANQ 160 >UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJ72_ALKOO Length = 302 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 49/173 (28%), Gaps = 24/173 (13%) Query: 1 MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNIVPKEW------VA 49 M +I Q + + G+ + + ++Q + + ++ Sbjct: 129 MEPKIIQRDSFKIVGYEFKTTLRNNAHSRDIPAFWDQCNIEGKEAKLYETQFPPRHGEYG 188 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVA-----RVVGD 104 + + ++ V V + + ++ YAV D Sbjct: 189 ICVN--TNMETDEFSYILGVEV---LSFDHAMIDMYTLDVPAATYAVFTTPSVEDHDFVD 243 Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKP-CFEVYLNN--GAEDGYWDIEMYVAVQP 154 W +S YE+ FE Y E + +E+YV +Q Sbjct: 244 SIQGTWNYILEEWFPNSGYEIDDTKLDFEFYDERCHPWEYSKFSMEIYVPIQK 296 >UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKN8_9FIRM Length = 167 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 4 EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDETPAE 61 +I++ + T+A G + K E + +N++ + + DNP +T + Sbjct: 23 KIEEFKDVTIAYMRRTGDYGFKNKILMENFKEHLRKENLLNSNSIILGIALDNPADTDRD 82 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121 KLR D + V G E + + + +I G YAV D A W L Sbjct: 83 KLRYDVGLIVSG-----EPNTALDIRKIPDGMYAVFELPHTEQDVAAFWSNI--EQLVG- 134 Query: 122 AYEML-PKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + KP E Y + + E + ++ Sbjct: 135 DLTVDKAKPMIERY--SADKVAKHLCEFCIPLK 165 >UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ILS3_9CLOT Length = 280 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 15/161 (9%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD---NPDE 57 M+Y I + V G P+ + + D N KE +YD Sbjct: 128 MDYTIIERTPFNVMGIRRTTPYG---GGTWAIVKS--DGSNEAIKETTGRFYDLGLCFSF 182 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFN 115 + E EG+ + + + A+ W + N Sbjct: 183 GEDGSNDYMCGIEWDK-----EPIEGLDIFKYPEATWLKFEAKGSISSQVLGSVWQRINN 237 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKH 156 + S Y+ P E Y+ ++E+++ V PK+ Sbjct: 238 EFMPQSKYKKTGLPTIEKYVLWDDAADICNVEIWIPVAPKY 278 >UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFE7_9CAUL Length = 291 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVY---YDNPDETP 59 EI + T+ G + + + +++L V S+ + + +Y +D+P T Sbjct: 137 IEIVAADPLTLTALRNTGAYPE-LNAVYQRLFDLVFSQ-LSMEHLAGLYGYQHDDPRHTA 194 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E R + V V G L E+ + + G YA D + + + Sbjct: 195 PEACRAEVAVDVGGKAELTEDLYHI---VVPSGLYARLRHLGDYDAIQPAMDTLYLA-VI 250 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 D+ Y + +P +L++ E D+ ++++ + Sbjct: 251 DAGYALADQPLHLHFLDDPEEVATADLRCDLFLPL 285 >UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K6U1_BACHD Length = 300 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 15/163 (9%) Query: 5 IKQEEKRTVAGFHLVG-----------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 I + V G L G + + + QL + +V+ Sbjct: 134 IVTRQPLQVVGLQLEGLSLPGGSDREQTTQVAIPSLWHQLEARIHEIERRVDPFVSYGIS 193 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 +P V + +G I EI GG YA + + + Sbjct: 194 SPS-RDGSHFTYMACVEIEAGDV--NIPQGFIQKEIKGGTYASFHYKGAANQLSALTNYI 250 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155 + S L S Y+ EVY EDG +E++ ++ + Sbjct: 251 YGSWLPSSQYQSHFGVEIEVYDEREPKEDGEVAVEIWTPIKKR 293 >UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=Bacteria RepID=Q18AY3_CLOD6 Length = 288 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 23/168 (13%) Query: 1 MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNIV------PKEWVA 49 M Y I +++ + G +V + V K + + + + P + Sbjct: 128 MQYRIVEKKGFRIVGIKESMNMIVEECFEKVPKLWAKCIKNGTIDKLSELINNEPCGLLG 187 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD---F 106 V T ++ L L + E + I G +AV + Sbjct: 188 VSV----CTNSKGLDYYIAAPTDKPV-LEDTHEYL----IPSGTWAVFECVSPMPNALAI 238 Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 + + L S Y P E+Y N + E+++ +Q Sbjct: 239 QELQKRIITEWLPSSGYVYANLPDIELYPNGDINAPDYTTEVWIPIQK 286 >UniRef50_A6LWV9 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LWV9_CLOB8 Length = 272 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 11/156 (7%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETP 59 + E+K + V + ++ + ++ P + +Y+D + Sbjct: 122 LKVELKDRKSLIVIS-RRTITSMSNISSVIGKVFEDIFKMDLKPSGPVMTIYHDKQEF-D 179 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 E C+ V V +N + E+ GG A + + + ++ Sbjct: 180 VENADCEVCVPVNSRVNAEKNEN---IKELAGGLVASTTFVGPYSRLGEAYAKV-VKWIE 235 Query: 120 DSAYEMLPKPCFEVYLNNGAED---GYWDIEMYVAV 152 D+ YE P F++YLN + E+ + Sbjct: 236 DNGYEYAGAP-FDIYLNGPQSVKSPEEFVTEVCFPI 270 >UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WAV0_BACSK Length = 119 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 30 FEQLMMWVDSKNIVPKEWV-AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88 E W + + + DNP+ TP E+ R D V + F + + + + E Sbjct: 1 MENFKKWAKLNGVFNDSIILGIPRDNPEITPKEECRYDVCVVINKDFNVTKPA---HIGE 57 Query: 89 ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEM 148 +GG+YAV + + ++ W F+ ++ + + +P E Y + ++ E+ Sbjct: 58 FSGGKYAVFLLDHTKEAVSEFWGNIFSE-IERNNLSIREQPIIERYTSQMIDN--HLCEI 114 Query: 149 YVAVQ 153 V +Q Sbjct: 115 LVPIQ 119 >UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW30_HALNC Length = 287 Score = 92.7 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 8/159 (5%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDET 58 M + VG ++Q V + WV + +V V +D+PD T Sbjct: 129 MPVTHGVLPPLKIISQRFVGSYDQ-VPHYWRVFGAWVTQTGLDTKQGVFVGVTWDDPDVT 187 Query: 59 PAEKLRCDTVVTVPGYFTLPE--NSEGVILTEITGGQYAVAVARVVGDDF-AKPWYQFFN 115 P ++R D L + S + I GG YA + + + + Sbjct: 188 PKGEIRYDCGFLPQNPALLEQIPTSSDLTHQTIAGGAYAALAGQGHYHELVPDRYQRLVC 247 Query: 116 SLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152 L S +++ +P E + + W E+ + + Sbjct: 248 QWLPSSGWQLDLRPALEWFAEAPWRMPEHEWRFEIRLPI 286 >UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI Length = 286 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 6/155 (3%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVY-YDNPDETPA 60 +I + VAG + +EQ + T Sbjct: 134 PKIILLGETEVAGLRGTTSLSDNQLPGLWEQFHGLNKDF-FTTSAGYGICETQKTAYTKD 192 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 ++ + + G+YAV R + K + F + LQ Sbjct: 193 GDALYSVMIG-GPVKDFDCLPLELAKKTLRAGRYAVFTHRGTLGNLYKTYQYIFGTWLQT 251 Query: 121 SAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153 + E+ + FEVY + +D ++++++ ++ Sbjct: 252 TREELDDREDFEVYEHEILSFDDPDNEVKIFIPIK 286 >UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CLS6_SHEPW Length = 303 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%) Query: 5 IKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPD 56 I+ + TV G + G + V + +L +D + + V Sbjct: 140 IEHRQAFTVYGLSSPIKGVLSDAPDFSSIVPDTWLRLFDIIDGVLPLAGNMLGVVDTLSL 199 Query: 57 ETPAEKLRCDTVVTVP----GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 +T + +R + + E + I +YAV ++F++ Sbjct: 200 KTEQQSIRYWAGLELDAEQRQSLQTLLTEEKLCSLTIPSQEYAVVAYSGTVNEFSQLVEW 259 Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWD-IEMYVAVQPK 155 L +S + L E Y + +E ++ ++ K Sbjct: 260 LICDWLPESGFVSLDGYELESYGKITSTITDLKHMEYWLPIKAK 303 >UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales RepID=C6CRA3_PAESJ Length = 297 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 11/159 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGP-----WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPD 56 +I + + G++ + + + + I K A Y P Sbjct: 143 KPDIIERPATRIIGYNYPTNLNNERYFEEIPGFYAHFGNHEYFMRIPNKARPAFAYGIPH 202 Query: 57 ETPAE-KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF-AKPWYQFF 114 + V + + E G E+ G+YA + W + Sbjct: 203 GYGEDGAFSFLIGEEVTSFAEVEE---GFACLELPSGKYAAFR-NGTMPEIGQNAWKYIY 258 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + L +S YE P FEV + + +Y+ ++ Sbjct: 259 GTWLPNSNYERGEGPDFEVTDVLNSTPQKISMTIYIPIR 297 >UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQZ2_CLOCL Length = 272 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 12/159 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPA 60 + IK V + P + K +++L + NI A+YYD T Sbjct: 120 DITIKSIPSYKVIAVRDIIPTYEGEGKLWDELCAFAGKNNIKAIGPSYAIYYD----TGY 175 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITG-GQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 ++ D V + + E V + E+ + AV + + + L Sbjct: 176 KESDVDVEVVMTISGDIAETV-RVKVKELEAVDEMAVVFHKGHFHEMTSAYRAL-AIWLS 233 Query: 120 DSAYEMLPKPCFEVYLNNG---AEDGYWDIEMYVAVQPK 155 + YEM P +Y + E+ V K Sbjct: 234 ANEYEM-NGPIRAIYHKGPWSEQNPEEYLTEIQAPVVKK 271 >UniRef50_A5V1E8 Transcription activator, effector binding n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V1E8_ROSS1 Length = 155 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 22/161 (13%) Query: 1 MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYD 53 ++ I+ + + G + ++ GFE + W + P + + + Sbjct: 9 LHVTIRDLPPTMIVYTSVLLQQMKGSYNDQIRDGFENIKDWARQQGYDPSALKVIGI--- 65 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 P+ A+ + + + + P N+E + ++ GG+YA+ + +F Sbjct: 66 -PNINGAQLIGYECALELE---IAPLNTEDIHTKQLPGGRYAILSLEKDSATIGETIRRF 121 Query: 114 FNSLLQDSAYEML-PKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 F + + +P +E+Y ++ V +Q Sbjct: 122 FAEYVPQHQLTVDLRRPNYEIYY-------EHVMDFCVPIQ 155 >UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQ04_AZOVD Length = 325 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 50/158 (31%), Gaps = 10/158 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDETP 59 ++ + V G + V+ + + +D + + V + DNP+ TP Sbjct: 171 QVRVESFPSQPVLAMRFYGSYA-LVEDNWRRFAECLDRAGFPLADAQAVGIVQDNPEITP 229 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + +R D V F + + + ++A R + + Sbjct: 230 NDLVRYD-CAIVDAGFDREHPA--LSRLILPAARFACLEHRAPYSHIFPVYRTIGSVWGP 286 Query: 120 DSAYEMLPK--PCFEVYLNNGAEDGYWD--IEMYVAVQ 153 S E Y +G + +++ +A++ Sbjct: 287 RSGECFGAGGTGTLERYRQPPWLNGGGEQWLDVTIALK 324 >UniRef50_A4BA46 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BA46_9GAMM Length = 293 Score = 91.5 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 49/163 (30%), Gaps = 19/163 (11%) Query: 2 NYEIKQEEKRTVAGF--HLVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 + ++ + G + G +E + ++ + + + + D Sbjct: 136 HVRLEHKPAFDFCGLPTRINGLLSGQPNFEDRIPAAWQHFQQLTHRRLPTDRPRIGL-ID 194 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 + +L T + + P + + YAV + D F Sbjct: 195 TFSQPTLGQLVYWTGIE----QSKPSAPVFLEKLSLPTSDYAVLPYQGPIDHFKHAVTWL 250 Query: 114 FNSLLQDSA-YEMLPKPCFEVYLNNGAEDGYWDI---EMYVAV 152 L ++ + + FE YL +E ++ E ++ + Sbjct: 251 LAEWLPNADVHHSNNRFEFERYL--PSETAGSEMVNAEYWLPI 291 >UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus pumilus RepID=A8FC61_BACP2 Length = 149 Score = 91.1 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 14/157 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVK-KGFEQLMMWVDSKNIVPK----EWVAVYYDNP 55 MNY+I+ + GP+ + ++ W++ + + V D+P Sbjct: 1 MNYKIEIVSNMKMVYMRNKGPYGSKENVEMMKRFKQWINQHQLNDELKEYGIYGVPQDDP 60 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + EK R D ++ F+ + V + GG+YAV + W Q Sbjct: 61 GKITPEKCRYDLMLMTNRDFSKDQM---VQTRHVEGGKYAVFTVTHTTEKVNLFWSQL-P 116 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 ++Q++ M P E Y + E + + Sbjct: 117 QMIQNNQLNMRPASIMERYR-----EEEGMCEFLLPI 148 >UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax=Methanomicrobia RepID=B8GHG4_METPE Length = 155 Score = 91.1 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 10/157 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMW-VDSKNIVPKEWVAVYYD---NPDE 57 +I + + V G G + + +L ++ + ++++ V + ++ Sbjct: 3 EIQIIEVLPQLVLGMRQKGAYRD-IPAMLGELYIYGISHQSVLTGPPVFICHEGSVEEAM 61 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 E D V P ++ E + + E+ GG+ A + R +D + + F Sbjct: 62 VANETGDADMEVAFPIEGSI-EGEGPISIYELPGGRMAKVLHRGPYEDCGPTYTRLFA-W 119 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 +++ + P EVYLN+ ++ E++V + Sbjct: 120 IEEQGLAVT-GPVREVYLNDPTLVKPEELMTEIHVPI 155 >UniRef50_Q3DSM6 Bacterial transcription activator, effector binding domain superfamily n=8 Tax=Streptococcus agalactiae RepID=Q3DSM6_STRAG Length = 143 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 24/153 (15%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 ++++I ++ +AG + V S ++ + + PD Sbjct: 2 LSFQIVEKPAMILAGVT----------------LENVKSNQEGIQQAIGICKTQPD---- 41 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSLLQ 119 R D T ++ G+ + I YAV + + W + Q Sbjct: 42 --FRFDYSATYQVETSVQAPK-GLEIIRIPSATYAVISVKGPMPSSLQETWRKIIQGFFQ 98 Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 ++ + P E+Y + +D + +E+++A+ Sbjct: 99 ENNLKPANSPNLEIYSSQHPQDTDYQMEIWLAI 131 >UniRef50_D1AKN1 Transcription activator effector binding protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKN1_SEBTE Length = 155 Score = 90.3 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 12/160 (7%) Query: 1 MNYEIKQEEKRTVAG--FHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVY-YDNPD 56 M IK+ + T+ G VGP + K + + +K E + Y + Sbjct: 1 MKAVIKELPEITIYGKKTKDVGPKTVGDLPKAWGEFFE--AAKGKFNPEHMNSYGLSDNM 58 Query: 57 ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG--DDFAKPWYQFF 114 E + Y +PE E + + +YAV + D+ +K + Sbjct: 59 RMTEELFDYTIGMEKESYTEIPEGFEEIK---LPANKYAVYTFKGKIEGDNISKFIGDIY 115 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDG-YWDIEMYVAVQ 153 + + E +P+ FE Y +D ++++YV ++ Sbjct: 116 MKWMPEEKLECIPEYSFEYYDERWIDDSDESELDIYVPIK 155 >UniRef50_D2NR94 Uncharacterized protein conserved in archaea n=2 Tax=Rothia mucilaginosa RepID=D2NR94_9MICC Length = 165 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 12/159 (7%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI---VPKEWVAVYYDNPDET 58 I++ VAG V P + +++L + +++ V Sbjct: 13 EPRIEEHPAMVVAGVSQVFPLDGDFSSLWDELNQKASPAMLDVLKVTQYLGVCT---QPN 69 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 P ++R V + G+ + E+ YAV + + F Sbjct: 70 PKGQVRYTAGFLVSEPAS--AAKLGLGVLELPASTYAVVEVTGPISESIPAGFASFEEAF 127 Query: 119 QDSA--YEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 Y + EVY + + +E++V + + Sbjct: 128 FAKNPQYRPVGG--LEVYGRGDMQAADYRMELWVPLVKR 164 >UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales RepID=C7XCD5_9PORP Length = 289 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 18/161 (11%) Query: 1 MNY--EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW---VAVYYDNP 55 MNY E+K+ + H G + +LM W +K ++ ++VY Sbjct: 1 MNYTFELKELHATHIVYLHHQGD-MSLIPSSIRKLMQWAGAKGLINGPANKLISVYQH-- 57 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 ++L D +TVP E + ++GG YA+ + D+ W + Sbjct: 58 ---EGKELSVDIGLTVPQEV---EGENEISKGLLSGGLYAIGHFEIGTDEIPAAWSLMYT 111 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD---IEMYVAVQ 153 L + FE+Y + + D I++ + VQ Sbjct: 112 -LTSKHQCKPCAGKSFEIYQSIPLDQHPQDKCMIDLCIPVQ 151 >UniRef50_B3PD71 Transcriptional regulatory protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PD71_CELJU Length = 172 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 14/158 (8%) Query: 2 NYEIKQEEKRTVAGFHL--VGPWEQTVKKGFEQL-MMWVDSKNIVPKEWVAVYYDNPDET 58 I++ +AG + + ++ W V + + Sbjct: 18 EPRIERSGPLLIAGLCQPLDSEAFTRIPQLWQDFTSQWNQLAQRVGEVNYGLCM----RA 73 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A + T+ + LP + I YAV F+ L Sbjct: 74 DAGAIHYLAGCTLWDFDNLPAA---LSRFVIPLQDYAVFHHEGHVSTIRHTIDAIFDRWL 130 Query: 119 QDSAYEMLPKPC---FEVYLN-NGAEDGYWDIEMYVAV 152 + +++ + FE Y G DIE++V V Sbjct: 131 PQARFQLATQQSLHFFERYGEAFDPVTGEGDIEIWVPV 168 >UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTW1_9CLOT Length = 286 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 16/164 (9%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-----VKKGFEQLMMWVDSKNIVPK----EWVAVY 51 MNY I +E V G V K + M + + K + + Sbjct: 127 MNYRIFDKESFMVVGKQAKISMIDEQNFSQVPKFWRGCMKEGSYQWMSSKAGKLGILGIS 186 Query: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110 D ++ + G + I +A A + Sbjct: 187 KDFDKY--KDEFNYMMAIEKIQSTIPK----GYVSANIPAATWAAFEAVGPVPEVLHDLL 240 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 + ++ + Y+ P E+Y + E+++ ++ Sbjct: 241 RRIYSEWMPSMGYQHDCAPDLEIYPIGDMFSRNYSCEIWIPIKK 284 >UniRef50_D1AJG5 Transcription activator effector binding protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AJG5_SEBTE Length = 153 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 18/161 (11%) Query: 1 MNYEIKQEEKRTVAGF--HLVGPWEQT---VKKGFEQLMM---WVDSKNIVPKEWVAVYY 52 M YEI + +T+AG Q + K +E+ + ++N + VY Sbjct: 1 MKYEIVEIPTKTMAGISIRTTNENMQAVNDIGKLWEEFWNKNIFSFTENKKNNKMYGVYT 60 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAK-PWY 111 N + + V N++ + + +YA R D+ A+ W Sbjct: 61 -NYEGDFTKPYDFYACCEVSSEG---NNNDEFSVISVPESKYAKFSLRGNYDEAAEKLWN 116 Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 + ++ + FEVY N+G + +E+YVAV Sbjct: 117 TIW-----ETKLDRKYTYDFEVYHNDGNDPENLLLEIYVAV 152 >UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lactococcus lactis RepID=O87252_9LACT Length = 265 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 21/165 (12%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW----EQTVKKGFEQLMM-------WVDSKNIVPKEWVA 49 MNY I + + + G P + ++ K +++ + P + Sbjct: 105 MNYLITNKPEMMITGIKESYPNITVGQASIPKFWDRFNESDLFNQVINEKSEHSPNTILG 164 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108 + E V T + + + +AV A + + Sbjct: 165 ICL----PREGEAYDYFIGVYTDEKTTA----DKLETITLPASDWAVFKAVGKVPEAIHQ 216 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAV 152 + + S + Y P FE Y + E+++ + Sbjct: 217 TYQDIYESFFPSTTYTQKKAPDFESYPLDLNPMSENHITEIWIPI 261 >UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YZW0_ANASP Length = 290 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 60/154 (38%), Gaps = 9/154 (5%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61 IK+ VA + P ++ + + ++ ++ + ++ A + +P + Sbjct: 140 EVVIKKVAPIQVASIRQILPDNPSIGQLYGEISEYLAQNGVKAGDYYAGIWHDPGYKDTD 199 Query: 62 KLRCDTVVTVPGYFTLPENSEGVILTEITGG-QYAVAVARVVGDDFAKPWYQFFNSLLQD 120 + + V+++ G +E + + E+ G A + + A+ + + ++ Sbjct: 200 -IDAEAVISIEGSIK---GNERIKIYELPGSETTACLIHHGSYETLAQAYATLVS-WIEA 254 Query: 121 SAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAV 152 + Y + P EVY+ G E + E+ V Sbjct: 255 NGYNIT-APNREVYIIGGNEQNNDSYVTELQFPV 287 >UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=uncultured archaeon RepID=D1JG23_9ARCH Length = 332 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 15/160 (9%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM--WVDSKNIVPKEWVAV----YYDNP 55 +K + V G +E+ + + +L + + + Y+DN Sbjct: 179 EPIVKDVSSQRVLSRREKGTYEEVIPRLIGELSGRVFGPENQRARVKCTGIPITIYHDN- 237 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 E + + + V G T+ + + G+ + + D + F Sbjct: 238 -EYKEKDADIEVALPVSGNITV---GPEYEVKILDEGKVVSYIHKGPYQDAGGAYRAVF- 292 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153 + +++ E+YLN+ E ++ E+ V V+ Sbjct: 293 EYIDKKGLKVVGNY-RELYLNDPKETPETELLTEIQVPVE 331 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPA 60 YE+K ++ V + GP++ + + ++D K + V + +Y ++P ETP Sbjct: 261 EYEVKILDEGKVVSYIHKGPYQDA-GGAYRAVFEYIDKKGLKVVGNYRELYLNDPKETPE 319 Query: 61 EKLRCDTVVTVPG 73 +L + V V Sbjct: 320 TELLTEIQVPVED 332 >UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357C1 Length = 307 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 13/159 (8%) Query: 3 YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP- 59 +++ ++ +V G+ G + + + + + D + + + ++ P Sbjct: 152 VTMREAKELSVVGYCSSTKGGFA-GIGRCWRRFHAKKDRISGCTNKEFLIGINDYSYYPC 210 Query: 60 ---AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-FAKPWYQFFN 115 + R V +T P+ G+ + G+ V R +D + Sbjct: 211 KGLDQVFRYIAGAEVMQEYTAPK---GMQKFTLPAGRCVVFSFRGRNEDSLQPVVEYIYG 267 Query: 116 SLLQDSAYEMLP--KPCFEVYLNNGAEDGYWDIEMYVAV 152 DS + F Y E G +I+++V V Sbjct: 268 EWFPDSTCRFDEDRRYDFARYGEQLDEHGESEIQLWVPV 306 >UniRef50_Q2PJA4 ORF3 n=1 Tax=Enterococcus faecalis RepID=Q2PJA4_ENTFA Length = 164 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 22/167 (13%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKN---------IVPKEWVAV 50 M+ ++ ++ + G P + Q + +L + + + P + V V Sbjct: 1 MDVKLIEKPAIQIVGVCQKVPLQYQGENQAIMELEQRITPQQRAEMHTFDDVYPHQVVNV 60 Query: 51 YYDNPD--ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107 +D + T ++ E + + +AV Sbjct: 61 SFDFQEGRTTEGGEMTHMIGFATSQ----ENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQ 116 Query: 108 KPWYQFFNSLLQDSAYEMLPKP--CFEVYLNNGAEDGYWDIEMYVAV 152 + W + F+ L S Y+++ P F Y G + + E+++AV Sbjct: 117 ETWARIFSEWLPSSGYQVVAAPEISFTQY--QGPAEAKYS-EIWLAV 160 >UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BBL2_9BACI Length = 311 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 18/166 (10%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59 + VGP+ + + +E L W S+ ++ + V +NP TP Sbjct: 152 KVRTIELPVCATVNRQSVGPYTEGIPDAWEDLYHWTTSRELMKPDPFTFGVPRNNPYITP 211 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-----DFAKPWYQFF 114 EK R D + + + GG++ V D + + + + Sbjct: 212 PEKTRYDCRIAIDQDKIPEGEPAFL----FKGGKHVVYEFDEPVDYSERGRLIECYSELY 267 Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIE-----MYVAVQPK 155 + L S Y L P E+ ++ G +E + +A++PK Sbjct: 268 SFWLPRSGYRYLDNPV-EL-VDVKPLKGSLSVECKIRAICLAIEPK 311 >UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=Clostridium RepID=A7FVD8_CLOB1 Length = 294 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 22/168 (13%) Query: 3 YEIKQEEKRTVAGF-----HLVGPWEQTVKKGFEQLMM------WVDSKNIVPKEWV-AV 50 Y I ++E V G + + + + ++ ++ + Sbjct: 130 YRIVEKEAFKVFGTGFETTRINYAAYKEIPEFINKIFKDGTHDRINEALGNSKGSLLDGF 189 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD---FA 107 +YD + +P E S+ + ++ +AV D Sbjct: 190 HYD---FKENGTRKYMMGYEIPR----TEISDEFTILQVPKLTWAVFEGYGAMPDNLIIQ 242 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 W + ++ S +E + PC E N + + E+++ V+ K Sbjct: 243 DIWRRIYSEWFPSSGFEQVEGPCIEKNFWNNKKHDEYKCEVWIPVKTK 290 >UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I8N6_BORPD Length = 291 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60 +++ G Q F +L + S +++ + + YD P P Sbjct: 140 VTVRELPPTRFWAVRYEGMSSQKYACWNDFRRLFAHLRS-DLLTGPFFGLTYDTPMFVPT 198 Query: 61 EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120 +R V VP F P+ + + + GG+ A+ A D + + L Sbjct: 199 PFMRYYCGVQVPPGFG-PKPKDAFEI-TLPGGRIAMCEAHCTADGLPALYANLLDQWLPR 256 Query: 121 SAYEMLP---KPCFEVYLNNGAEDG-YWDIEMYV 150 S Y + FE + N + + ++ Sbjct: 257 SGYSLRASCFAERFETFPTNWEFNPRRVQLNCWI 290 >UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=Proteobacteria RepID=Q4K667_PSEF5 Length = 295 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 13/150 (8%) Query: 8 EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPAEKLRC 65 + + G T+ + +++ + P + + R Sbjct: 152 LASQRIIGMAWQQDDPGTIAELWQRFEPREQEIQRLAEPVGTYGIC----QPLEDGQWRY 207 Query: 66 DTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM 125 + V L G++ EI YA + + ++ L + Sbjct: 208 VAGLPVAADAPL---VPGMVELEIPARHYARVEHHGSVATLPETFRAAYSEWLPAAGLMP 264 Query: 126 LPKPCFEVYLNN---GAEDGYWDIEMYVAV 152 + FE Y G +E+Y+ + Sbjct: 265 IDAVEFE-YTGERFLGPMHPDSVVELYIPL 293 >UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=Actinomycetales RepID=B8HE83_ARTCA Length = 288 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 17/166 (10%) Query: 1 MNYEIKQEEKRTVAG------FHLVGPWEQTVKKGFEQLMMWVDSK-----NIVPKEWVA 49 M+ I + G GP ++ L ++ N P + Sbjct: 125 MDTRIADRPAFRLVGHAARVPLIHQGPNP-HIQAHIASLPAAEHARLKALCNTEPAGLLQ 183 Query: 50 VYYD-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG-DDFA 107 V D +PD L V V +PE+ + + E+ G +AV Sbjct: 184 VSADVDPDYAEGSDLTYLHGVAVSEGTPVPEDLDAI---EVPAGAWAVFRTSGAYPAALQ 240 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 W + + + P P L+ + E+++ V+ Sbjct: 241 STWAATAAHWFPSNPWRLRPGPSVVAILDRADDFSTATTELWLPVE 286 >UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes RepID=B7HW35_BACC7 Length = 281 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 29/166 (17%) Query: 1 MNYEIKQEE-KRTVAGFHL---VGPWEQTVKKGFEQ-----LMMWVDSKNIVPKEW---- 47 M Y I+ + + + G + + + M + + + Sbjct: 128 MEYRIENLDFELRIVGKSKSVKTSSAFKKIPTLWNNAKKDGFMQELIDMSWEDPKCKLES 187 Query: 48 -VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF 106 + V + T E V G E + I +AV + Sbjct: 188 LLGVCGKDAAITDEE-FSYFMGVRYDG-----EVPTDMETLVIPVSTWAVFP------NI 235 Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 W + ++ + S YE+ PC E Y E++V V Sbjct: 236 VDAWKRLYSEWVPTSKYELANLPCIECYY---GPKHKPRHELWVPV 278 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 88.0 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 13/161 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK------EWVAVYYDNP 55 +I++ R G + + + K F+ L+ W+ N + ++ + Y NP Sbjct: 132 EIKIEEYPSRECVMITHKGEYLEGM-KTFDILVSWLVENNFYSETSVKSIPFITIPYANP 190 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQF 113 E+ RCD +++ + N G+ I+ G +AV + F Sbjct: 191 LESAGSDYRCDIAISINC--KVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITNV 248 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152 L ++ +E LP P ++N+ ++ ++ + V Sbjct: 249 LTEWLPETQWEPLPAPILFEHINSPLFVPETELITKVCIPV 289 >UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P7_HALOH Length = 231 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 10/158 (6%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60 I + + VA + + + +E + W N++ +DNP TP Sbjct: 79 EVRIVELKPVWVASYRAEAESPE--PRAWEVIFKWAKKYNLLQLPGTRFFGFDNPSPTPD 136 Query: 61 EK-LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + + VT+P E + + + +GG YAV D + W Q + ++ Sbjct: 137 KAVYGYEFWVTIPHKNF--NIPEEMKIRKFSGGLYAVTNTNFREFDVGERWKQLY-KWVK 193 Query: 120 DSAYEMLPKPCFEVYLN---NGAEDGYWDIEMYVAVQP 154 +S + C E ++ + +++Y ++P Sbjct: 194 ESEFSYREGICLEEHITLTGYNLDINTVQLDLYEPIKP 231 >UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J103_9FLAO Length = 115 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 DN D P + V + +P + + EI+ G YAV + + A + Sbjct: 14 DNFDFNPNTPFVKWAAIAVSSFDFIPA---DMEILEISEGLYAVFNYKGNQSNAAAFFNL 70 Query: 113 FFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155 + L S +E+ +P FE+ Y NN + E+++ ++ K Sbjct: 71 IYTEWLPKSDFELDNRPHFEILGTKYKNNAPDSEE---EIWIPIKRK 114 >UniRef50_C6XQS4 Transcription activator effector binding n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQS4_HIRBI Length = 170 Score = 87.3 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 20/167 (11%) Query: 2 NYEI-----KQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDS-KNIVPKEWVAVYY 52 Y+I + E +VAG ++ + ++ + N V V Sbjct: 5 EYKIPKTRYEFREGFSVAGLRKQFDVDEKIDGIPALWKAFGPQIAEVANAVTDACYGVI- 63 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 P + + V + L ++ + + I Y V + + W Sbjct: 64 --GASNPDGDVDYLAGIKVTSFDGLDKDFDRM---VIPDQNYLVVTHEGDVSNIQQTWDW 118 Query: 113 FFNSLLQDSAYEMLP----KPCFEVYL-NNGAEDGYWDIEMYVAVQP 154 F + E++ P FEVY + +I+++V VQP Sbjct: 119 IFVEFPKSLGLEIIEVFAMTPEFEVYDARYNPQTREGEIDIWVPVQP 165 >UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium RepID=A5N0X9_CLOK5 Length = 275 Score = 87.3 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 13/157 (8%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYY--DNPDET 58 N +K+ E TV + ++ V + P +++YY + ++ Sbjct: 123 NIILKEREPLTVLSIRDNIS-MDYIGSLIGKIYENVYKNGLKPIGNIMSIYYLQNEEEDF 181 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 + + + V F+ S + + GG +A + ++ + + Sbjct: 182 NHDNADVEVCIPVDKEFS----SNEISTRIMEGGLHAYTTFVGPYSEISQAYGAMM-EWV 236 Query: 119 QDSAYEMLPKPCFEVYLNNGAE---DGYWDIEMYVAV 152 + + Y++ +P FE Y+ E + E+Y V Sbjct: 237 KHNKYKIS-RPPFEKYIKGPEEGCNPQDFVTEVYFPV 272 >UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD23_9ACTN Length = 305 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 35/177 (19%) Query: 4 EIKQEEKRTVAGFHLVGPWE-------------QTVKKGF---------EQLMMWVDSKN 41 I ++ + G + ++ + E+L D Sbjct: 140 RIVTHDEMRLIGIAFPCDAAMDAPLIQMADEGREELRHFWGSASQAGDIERLFSLADDGG 199 Query: 42 IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV 101 P+ V + L V+ P ++ + ++ G +AV Sbjct: 200 --PRRIFGV-----NSVRRGDLTYHIAVSSSE--EAPAWTDEIRVSR---GSWAVFECVG 247 Query: 102 VGD-DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157 + A+ +++ + L S YE+ EVY + + E+++ V ++ Sbjct: 248 PCEVATAEHYHRIYAEWLPASGYELAHDVSLEVYPSGDFSSTGYRSEIWIPVVERNE 304 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 10/153 (6%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62 ++ TVA G Q + F QL + + + A +P P Sbjct: 116 VHLETRAPVTVAMLAHSGEC-QRLGDTFYQLESLLRLRGAETSQARAFSI-HPAIDPLHA 173 Query: 63 LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122 + P Y P + EI GG+YAV R D + F + Sbjct: 174 DKHVAASVAPEYAMAP-----LQAGEIAGGRYAVLRHRGPYADLDSVYDWFVQEWFPAAG 228 Query: 123 YEML-PKPCF-EVY-LNNGAEDGYWDIEMYVAV 152 + +P E Y ++ +++ + + Sbjct: 229 QHIASDRPVILEYYDPSSDIPVQQKRVDICIPL 261 >UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I964_9CLOT Length = 286 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 20/167 (11%) Query: 1 MNYEIKQEEKRTVAGF-------HLVGPWEQTVKKGFEQLMMW----VDSKNIVPKEWVA 49 M+Y+I ++E + + + + + + V N + Sbjct: 128 MDYKIVKKESFKLLVKVKEFRVESISEDNNEDIPNFWNECAENGVFDVLKSNTTNHDIYG 187 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-FAK 108 V P ++ + G + EG + ++ + V D + Sbjct: 188 VC--KPISKESKYFDYGIAMKYDGG----DVPEGYKVWDVHPTLWGVFKCVGENGDCIGE 241 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155 W + FN L S Y ML FE Y + D E+++ V+ K Sbjct: 242 MWNRIFNEFLPSSDYTMLDDIDFEFYKEDNNTD--CFCEIWIPVEKK 286 >UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NGL3_ROSCS Length = 156 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 21/160 (13%) Query: 1 MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYD 53 ++ I+ VA F G + +++GF Q+ W + + + + + Sbjct: 9 LHVTIQDLPPFRVACFFCNLQLATGQYSNQIQQGFRQIKSWALQRGLDLTRQRIIGI--- 65 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113 P + D V +P + ++S + GG+YAV + + +F Sbjct: 66 -PHVRDGQLTGYDCCVELPENGVIDDHS--FQMKRAPGGRYAVLLLEKNSAVIGEAIGRF 122 Query: 114 FNSLLQDSAYEMLP-KPCFEVYLNNGAEDGYWDIEMYVAV 152 F + P + +EVY +V + Sbjct: 123 FTEYAPAHHLVVDPQRFSYEVYDETFMT-------YFVPI 155 >UniRef50_A3I0M8 Transcriptional regulator, AraC family protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0M8_9SPHI Length = 162 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 4/159 (2%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSK-NIVPKEWVAV-YYDNPDE 57 M ++++ +T+ G + Q + + ++ K + P ++ ++ Y + Sbjct: 1 MEVKVEEITSKTLFGKKTITTLGSQDISALWRPFRQAINKKEGLNPSDYYSIQRYGKDMQ 60 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 + + L + +G + GG+YA + F N+ Sbjct: 61 SKSLSLNTEFEKCAAIEIVKDACPDGFEEIVLDGGKYATFEYARNMGEIQTILMGFLNNW 120 Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIE-MYVAVQPK 155 L +SA+E+ + FE + + +E +++ ++ K Sbjct: 121 LPNSAFELDDRNHFETFGPDYDPFSVDSVEVIWIPIKEK 159 >UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Marinomonas RepID=A6VR73_MARMS Length = 306 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 50/171 (29%), Gaps = 18/171 (10%) Query: 2 NYEIKQEEKRTVAG--------FHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53 I+ + + G F + + V + + Q++ V + + + Sbjct: 137 QIRIESRDGFHIQGRSAWIRGLFSASPNFSERVPQLWSQVISEVKTV-TKGYRPIGIIDT 195 Query: 54 NPDETPAEKLRCDTVVTVPGYFTLPENSEG--------VILTEITGGQYAVAVARVVGDD 105 +++ P + P G + + +YAV Sbjct: 196 QDHAQHPDQMLYWAGYLEPINTSSPTIFSGANPFNTTPLDTVRVPLQEYAVIPVYGKSSA 255 Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155 K F L +S Y + EVY + +E ++ ++P+ Sbjct: 256 VEKALEWFIYQWLPESNYYGVQGYELEVYEPDYDPSSSKSYMEYWLPIKPR 306 >UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1I3_ERYRH Length = 288 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 50/166 (30%), Gaps = 23/166 (13%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-----VKKGFEQLMMWVDS------KNIVPKEWVA 49 M I+++E +AG+ +E + ++++ + + V Sbjct: 134 MKMRIEEKESVNIAGYQKTFSYENGANLKEIPMFWDEINQSAKDLDLFKMNDHKIEGIVG 193 Query: 50 VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108 + + + + + EG++ E+ ++ V A Sbjct: 194 LC----QQASDGFMTYLIGTSC-------DFQEGLVNVELPKSRWLVFDAVGPLPQSVQN 242 Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154 W + L + E+ EVY E+++ ++ Sbjct: 243 TWRDIVSLYLPTCSEEIDGSMDLEVYSQEDPNSESLVTEIWLRIKA 288 >UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR14_CLOPH Length = 281 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 21/162 (12%) Query: 1 MNYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMM-----WVDSKNIVPKEWVAVYY 52 M I+++E V G E + + L + N PK + + Sbjct: 128 MKCRIEKKEAFKVVGAKKTFRNDMVENLLPHFWRDLPQETYEKIIKQSNGEPKGLLGLCA 187 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 + + + + I +A+ A + + Sbjct: 188 NFGG---EHTFDYYIATSTKNSEV-----QDLDQINIPEATWAIFEAEGTVTEL---INR 236 Query: 113 FFNSLLQDSAYEMLPK--PCFEVYLNNGAEDGYWDIEMYVAV 152 + S Y P EVY + + E++ V Sbjct: 237 IWQEWFPSSGYRRADNSIPDVEVYFDYDFPKENYTYELWYPV 278 >UniRef50_A4CQ28 Transcriptional regulator n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CQ28_9FLAO Length = 166 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 17/163 (10%) Query: 3 YEIKQEEKRTVAGFHLVGPWEQTVK----KGFEQLMMWVDSKNIVPKEWVAVYYDNPD-- 56 I+ + +AG G + + +++ M + P Sbjct: 2 PRIETLPETLLAGL---GREMSVIGNRTRELWQEFMPLTRKIPTRQGGDLYSVEIYPGLD 58 Query: 57 ----ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112 P V V + +P + + G YAV + A + + Sbjct: 59 YFKAFDPKRPFVKWAAVPVQSWQDMP---GELDKLVLPTGLYAVFRYKGTPQAVAPFYRR 115 Query: 113 FFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQP 154 L S Y++ +P F V + ++++ V+P Sbjct: 116 ILEEWLASSVYQLDNRPHFAVMGPEYKGNHPESEEDLWIPVRP 158 >UniRef50_Q28T08 Transcription activator effector binding n=1 Tax=Jannaschia sp. CCS1 RepID=Q28T08_JANSC Length = 267 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 14/156 (8%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWE----QTVKKGFEQLMMWVDSKNIVPKEW-VAVYYDNP 55 M + K + + + F ++ +V I P ++VY Sbjct: 115 MEFTRKTLPAQPYIYVERECAYGPEIADAMGSAFGEIFAFVGQSGITPLSMPMSVY---- 170 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + LR V V + + + G + + D + Sbjct: 171 TGMDPKILRFRGGVIVS-TDDAAKAEGAIKSDALPAGDVMHVIHKGPYDTMNLTHKALW- 228 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMY 149 L+ P +E+Y ++ + D+ E++ Sbjct: 229 EHLEAQG-TPGTMPTWEIYTDDPGDTAPEDLRTEIF 263 >UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NJZ3_KYTSD Length = 276 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 15/162 (9%) Query: 1 MNYEIKQ--EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58 M+ EI + T+ P +EQ + + + + P V ++P Sbjct: 119 MSIEISETTLPSTTMVLLRGAIPSYSEEGVLWEQFIPELGRQGLTPIGPGGVVENDPTYV 178 Query: 59 PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118 A D V +P + + E+ + A ++ Q + Sbjct: 179 EAGP---DVSVWLP-VAPGTTARGPLEVHELPEQRAVKATITGPYSQISEAHAQ-MAQYM 233 Query: 119 QDSAYE---MLPKP---CFEVYLNNGAEDGYWDI--EMYVAV 152 P YL++ + D+ E+Y + Sbjct: 234 GQEGLTEASPGDGPVGKVVNRYLSDPSNTPEADLLTEVYRPL 275 >UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=Actinomycetales RepID=D1WZP5_9ACTO Length = 290 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 22/167 (13%) Query: 1 MNYEIKQEEKRTVAGFH------LVGPWEQTVKKGF-----EQLMMWVDSKNIVPKEWVA 49 M Y + +++ V G GP + + E+L + P V Sbjct: 127 MQYRLVEKDAFRVVGRRARVPLVHEGPNP-AIAEFIRGIGREELDRIAALSDQDPAGLVG 185 Query: 50 VYYD-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107 V +P +L V + E E + + G +AV Sbjct: 186 VSDQLDPSRAEGTELDYYHGV-----VSGAEPPEDLDSLSVPAGSWAVFENEGEFPGALQ 240 Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAVQ 153 W F + Y P P E+ E+G + E+++ V+ Sbjct: 241 YLWRDVFTQWFPSNPYVSRPGP--EILRVRLTEEGKRAEAELWIPVE 285 >UniRef50_B1L1R5 Transcription activator, effector binding domain protein n=12 Tax=Clostridium RepID=B1L1R5_CLOBM Length = 240 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 19/160 (11%) Query: 4 EIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVPK----EWVAVYYDN 54 ++ +++K + G + G + + K +E+ I+ K E++ +Y D Sbjct: 90 KVVEKDKMIIVGKEIRTTNKDGAFMAVIPKLWEEFENKKLGDKILNKVNKNEFLGLYTD- 148 Query: 55 PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQF 113 + V ++P+ G+ I +Y V A+ D + W Sbjct: 149 YENKEMGLYSFMVGFQVTDTNSIPK---GMTYKVIPATKYCVVTAKGKMPDKIGEAWGYI 205 Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + +S + FE+Y + ++++YVA++ Sbjct: 206 W-----NSGLQRTYTGDFELYDKRYDKSQNSEVDIYVAIK 240 >UniRef50_Q3AFY4 Putative uncharacterized protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFY4_CARHZ Length = 154 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 7/157 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDS--KNIVPKEWVAVYYDNPDE 57 M EI + + G G E+ + + +++ + + KE + + Sbjct: 1 MKPEIIFKPGFFLVGMKYEGRNEKGEISELWKKFSERIFEIKNRVNEKECYGLSIYSEKF 60 Query: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 + V V +PE ++ E+ +YAV D K ++ + Sbjct: 61 FATGEFLYLAAVEVVKIEEVPE---EMVAVEVDPAKYAVFTLPGEPDKLPKLIHEIYCRY 117 Query: 118 LQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQ 153 L++ + + FE+Y I +V V+ Sbjct: 118 LKEEGLKPVGNYDFELYNERYPPNQKDSKIYFFVPVE 154 >UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX83_SYNWW Length = 152 Score = 84.6 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%) Query: 1 MNYE--IKQEEKRTVAGFHLVGPWE---QTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNP 55 M Y+ +++++ + E Q + K + +M ++ + P V Y N Sbjct: 1 MQYQFVVEEKKAQPTISVRTRTAVENLPQVLGKAYGAIMNYLFEIGVQPAGEPYVGYFN- 59 Query: 56 DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115 + L + + V ++ + +EI G+ + + + Sbjct: 60 --MDMQDLDLECGLPVAQPVV---GNDKLKPSEIPAGKQVSCLYTGPYNQIEPAYNAIMA 114 Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI 146 + + Y C+E YLN+ AE ++ Sbjct: 115 -WIPANGYTPT-GVCYEFYLNDPAETPENEL 143 >UniRef50_B8FW41 Transcription activator effector binding n=6 Tax=Clostridiales RepID=B8FW41_DESHD Length = 146 Score = 84.6 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%) Query: 1 MNYEIKQEEKRTVAGF----HLVGP-WEQTVKKGFEQLMM---WVDSKNIVPKEWVAVYY 52 MNYEI ++ V G P +Q + +++ M WV +N + +Y Sbjct: 1 MNYEIVTLPEKIVVGVTARTSHTDPQCQQVIGGLWQKFMGEGIWVSIQNQANPYCLGLY- 59 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWY 111 V + + I G YA+ + D A+ W Sbjct: 60 ---SGYDETSYDVTVGAEVTK-----NGNPELTEKIIPAGSYALFRIKGDVVKDVAEAWD 111 Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + + L E FE YL+N E+G +I++Y+A++ Sbjct: 112 KIWT--LP---LERSFTGDFEEYLSN--ENGVAEIKIYIALK 146 >UniRef50_Q49ZZ7 Putative uncharacterized protein n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49ZZ7_STAS1 Length = 154 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 21/163 (12%) Query: 1 MNYEIKQEEKRTVAG---FHLVG-PWEQTVKKGFEQLMMWVDSKNIVP------KEWVAV 50 MNY I++ +V G + G ++ + + + ++ + V Sbjct: 1 MNYIIEELPTLSVIGEKKIYATGQKAQENIFMFWMEFDDSGKKDQLLELGNNQLPGLLGV 60 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109 + ++ VT + N E+ GG+Y V A+ + K Sbjct: 61 C----KPHDSGEIHYLIGVTSEHKYDKWRN------IELEGGRYLVFDAKGPVPESIKKA 110 Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152 Q +L YE+ P FE+Y + + E+++ + Sbjct: 111 MQQINKDILPKLDYEIRHAPFFELYKEGAIREDDYVTEIWLPI 153 >UniRef50_C9RC23 Transcriptional activator ligand binding domain protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RC23_AMMDK Length = 158 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 7/160 (4%) Query: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59 M IK+ VA G ++ ++L W+ + + + V VY NP P Sbjct: 1 MEITIKELPPTKVAYLRKKGD-MESFPLAVQELEKWIVNAGLAISGPPVLVYLSNPVGMP 59 Query: 60 AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119 + + V G + E + + E+ + A + FF + + Sbjct: 60 HPFREWEVQIPVTGEAEVVEEEDR-GVKELPQRKVACVQHQGGFRAIEFILPGFFRA-IY 117 Query: 120 DSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQPKHH 157 + Y + P EVY L G D E+ + + Sbjct: 118 EQGYRL-EGPAEEVYPDLKGGEIDLEMVTEVRFPIASRSE 156 >UniRef50_B1HVH6 Putative uncharacterized protein n=5 Tax=Bacteria RepID=B1HVH6_LYSSC Length = 251 Score = 83.8 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 46/163 (28%), Gaps = 16/163 (9%) Query: 2 NYEIKQEEKRTVAGFHLVGPWEQT------VKKGFEQLMMWVDSKNIV---PKEWVAVYY 52 +I + E + G + + ++ + + +Y Sbjct: 94 EPKIIKREAFQIIGISTKTSNANELTAQAKIPQLWQDFYEKNIVDQLSKLDNQNVYGLYS 153 Query: 53 DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAV-ARVVGDDFA-KPW 110 D + V S ++ I +Y V + + + W Sbjct: 154 DYETDV-NGNYAITIGVEASKMND---ASPEWVIKTIPAAKYLVFTSHKGKMPEIVIQTW 209 Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 + + +S E FE+Y A +E+Y+A++ Sbjct: 210 QEIWA-WFANSKVERTYTGDFELYDERCANPQEAQVEVYIAIK 251 >UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2 Length = 290 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 22/167 (13%) Query: 1 MN-YEIKQEEKRTVAGFHLVGP-----WEQTVKKGFEQLMMWVD----SKNIVPKEWVAV 50 MN I Q + G+ + + + K I P + Sbjct: 131 MNKPVITQLGNFYIIGYEYQTNLQNEEYFTDIPLFYMDFGKKEYYQQIQKKIAPHMAYGI 190 Query: 51 YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110 V + E +EG + I G+YA + Sbjct: 191 ST---SFQDDGHFSFVVGEEVEDFDL--ELNEGFVKIVIPEGKYAEFKVSGSHEMVQNTR 245 Query: 111 YQFFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQ 153 + S L +S YE P FE+ + N + +++Y+ ++ Sbjct: 246 RYIYGSWLPNSNYERTSGPDFEITDVLHSNGPND---IKMKIYIPIK 289 >UniRef50_A6LX85 Transcription activator, effector binding n=2 Tax=Bacteria RepID=A6LX85_CLOB8 Length = 297 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 22/171 (12%) Query: 1 MNYEIKQEEKRT-VAGFHLVGPW------EQTVKKGFEQ------LMMWVDSKNIVPKEW 47 MNY I++ K+ +A + + + + + + K+ Sbjct: 128 MNYRIEETGKQRFIAKVRAFSNEIMNEAGNHDIPDFWGECHKEHLVEEIRNMRPDGKKDL 187 Query: 48 VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSE----GVILTEITGGQYAVAVARVVG 103 + +P + V + + G + E+ Y V Sbjct: 188 YGLC--SPTKKNETTFDYGIGVLIDEDTHIDNEEAMLKKGYRIWEVDSATYVVFKCYGNN 245 Query: 104 DD-FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153 D ++ W +FF L S YE +E+YLN G + E+++ V+ Sbjct: 246 GDCISEMWSRFFKEFLPQSDYEQTEDTDYEIYLNEG--EPGLFCELWIPVK 294 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.151 0.451 Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,084,205,034 Number of Sequences: 3077464 Number of extensions: 45441067 Number of successful extensions: 105378 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 501 Number of HSP's successfully gapped in prelim test: 627 Number of HSP's that attempted gapping in prelim test: 103149 Number of HSP's gapped (non-prelim): 1299 length of query: 157 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 39 effective length of database: 677,255,604 effective search space: 26412968556 effective search space used: 26412968556 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 87 (37.9 bits)