BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (157 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria...   328   3e-89
UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r...   130   2e-29
UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact...   116   3e-25
UniRef50_C8Q848 Transcription activator effector binding n=1 Tax...   113   1e-24
UniRef50_C5BHP3 Bacterial transcription activator, effector bind...   103   2e-21
UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax...    89   3e-17
UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax...    82   4e-15
UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D...    68   9e-11
UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri...    62   7e-09
UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D...    61   1e-08
UniRef50_B8DR99 Transcription activator effector binding n=2 Tax...    61   1e-08
UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=...    60   2e-08
UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria...    60   2e-08
UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S...    60   3e-08
UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax...    60   3e-08
UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P...    59   7e-08
UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta...    57   2e-07
UniRef50_A3YG43 Transcriptional regulator, AraC family protein n...    57   2e-07
UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax...    56   3e-07
UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl...    56   4e-07
UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B...    55   5e-07
UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S...    55   5e-07
UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B...    55   8e-07
UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R...    54   1e-06
UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n...    54   2e-06
UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=...    52   9e-06
UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa...    51   1e-05
UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R...    51   1e-05
UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D...    50   2e-05
UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n...    50   2e-05
UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P...    50   2e-05
UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n...    50   2e-05
UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P...    50   2e-05
UniRef50_A3Y658 Transcriptional regulator, AraC family protein n...    49   3e-05
UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R...    48   8e-05
UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta...    48   1e-04
UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen...    47   2e-04
UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga...    47   3e-04
UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=...    46   3e-04
UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D...    45   5e-04
UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax...    45   6e-04
UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R...    45   6e-04
UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta...    45   7e-04
UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n...    45   7e-04
UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D...    45   9e-04
UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba...    44   0.001
UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=...    44   0.001
UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n...    44   0.002
UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI...    43   0.003
UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De...    43   0.003
UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F...    43   0.003
UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma...    43   0.003
UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des...    42   0.005
UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus...    42   0.005
UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C...    42   0.005
UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta...    42   0.007
UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla...    41   0.012
UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B...    41   0.013
UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax...    41   0.013
UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=...    41   0.014
UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta...    39   0.045
UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=...    39   0.056

>UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI
          Length = 157

 Score =  328 bits (841), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA
Sbjct: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD
Sbjct: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157
           SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH
Sbjct: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157


>UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UFH4_YERRU
          Length = 159

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 1/155 (0%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M + I ++    V    +VGP+ +T+ +GF QL  W     I  + W+A+Y+DNP+ TPA
Sbjct: 1   MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSWHQHHQIPAQTWLALYWDNPETTPA 60

Query: 61  EKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +LR D   +V   F LP N SEGV+L  I GG YAV   RV+  D+AK W + +   L 
Sbjct: 61  AELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQHLP 120

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
            S Y      C+EVYLN+G  DGY+DI++Y +V+P
Sbjct: 121 ASGYVPAEGACYEVYLNDGQADGYFDIDIYQSVEP 155


>UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae
           RepID=A1JN27_YERE8
          Length = 157

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M ++I +++ + +    +VGP+ +T+ KGF+QL        I  K+W+ +Y+DNP+  P 
Sbjct: 1   MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKDWLVLYWDNPETNPP 60

Query: 61  EKLRCDTVVTVPGYFTLP-ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +LR D  ++V   + LP E S+ + L  I  G YAV   RV  DD+AK W + +N  L 
Sbjct: 61  AELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQHLP 120

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            S Y      C+EVYLN+G  DGY+DI++Y +V+
Sbjct: 121 QSGYRPTEGACYEVYLNDGRADGYFDIDIYQSVE 154


>UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b
           RepID=C8Q848_9ENTR
          Length = 153

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 2/154 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M   I +   +   G+ L GPW++TV +GF QL  WV +++ +  EW+A+YY NP   P 
Sbjct: 1   MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWV-ARHALQGEWMAIYYGNPQVVPP 59

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++L  +TV+TVP  F L    EG+    + GG Y      V  +DF   W  FF  L Q 
Sbjct: 60  QELSVETVLTVPADFALAV-GEGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQQR 118

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           S +++  +PC+E YL++G++ G W + MY+ V+P
Sbjct: 119 SDWQVDDRPCYEHYLSDGSQSGNWLLNMYIPVRP 152


>UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein;
           putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9
          Length = 155

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 4/140 (2%)

Query: 16  FHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYF 75
             + GP+ Q++  GFE+LM W  +++ +  +W+A+YYDNP E   + LR D  +T     
Sbjct: 16  LRVQGPFAQSLGPGFERLMAW-SARHGLRGQWMALYYDNPREVAPDALRADVALTT-ASV 73

Query: 76  TLPENSE--GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEV 133
           TLP + E  G+    + GG YA+A  RV  +DFA PW   F+  L    Y     PCFE 
Sbjct: 74  TLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQALPACGYRPDGGPCFER 133

Query: 134 YLNNGAEDGYWDIEMYVAVQ 153
           YL++G   G W +E+ V V+
Sbjct: 134 YLSDGRGSGEWLLELGVPVR 153


>UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea
           psychrophila RepID=Q6ALR9_DESPS
          Length = 155

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDET 58
           MN +IK+  +  VA    +G + E+T K+ F +L+ W + K  +     + +Y+DNP+ T
Sbjct: 1   MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGTILGLYWDNPETT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P EK R D  +TVP   TL E + GV L  I+GGQYAV    +  + F + W   F+  +
Sbjct: 61  PPEKCRTDACITVPD-GTLAEGTIGVQL--ISGGQYAVCHFEITAEGFQQAWKDAFSWFI 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQ 153
               YE   KPC+E++ NNG E  DG W  ++ + ++
Sbjct: 118 -GKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPLK 153


>UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium
           carotovorum subsp. carotovorum RepID=C6DEF0_PECCP
          Length = 154

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 4/154 (2%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M+  I+  E   V    +VGP+ + + +GF++++ W    ++   + +A Y+D+P +  A
Sbjct: 1   MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSIDKSLAFYWDDPSKVEA 60

Query: 61  EKLRCDTVVTVPGY-FTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           ++LR D  +T      TLPE+  G+    I GG YAV    V   DFAK W  F+ + + 
Sbjct: 61  DELRADVAITCKEMPSTLPEDV-GIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA-IN 118

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
              Y      C+E YL +G+ +G WDIE++ +V+
Sbjct: 119 AQGYCPAGDICYESYLCDGS-NGKWDIEIWQSVE 151


>UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72FD7_DESVH
          Length = 326

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
           M+  I++  +  VA    VGP+ E T+   + +LM W  ++ ++    + + V +D+P+ 
Sbjct: 170 MDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPGVKTLGVSWDDPEV 229

Query: 58  TPAEKLRCDT-VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
           TP E  R D  +V  PG     E   G    E+ GG YAV    V    F + W + F  
Sbjct: 230 TPPEHCRYDACIVIAPGV----EVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFGQ 285

Query: 117 LLQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154
            L  S  +   +PCFE+Y  +     +G WD+ + + V+P
Sbjct: 286 WLPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPVRP 325


>UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria
           RepID=A8FZF8_SHESH
          Length = 300

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 9   EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTV 68
           E  T+A   + GP+ Q  ++  + L  W  +K    +  + +Y+DNP+ TP EK R D  
Sbjct: 158 EAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENAIFIYHDNPEITPDEKCRTDIC 217

Query: 69  VTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG-DDFAKPWYQFFNSLLQDSAYEMLP 127
             VP      + S  V L    GG YA     V   +++ + W +    L+ D+  E   
Sbjct: 218 FRVPAD---TQASGRVELQVFPGGSYAYIRQTVKQMNEYGQAWSELMK-LVVDTGLESDE 273

Query: 128 KPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           +PCFE+Y +   +    D+    AV+
Sbjct: 274 RPCFELYHSFDPQTYVSDVSFCTAVK 299


>UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM
          Length = 436

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
           MN E+ +     VA    +GP+  +T+   + +LM W   + ++        V +DNP+ 
Sbjct: 276 MNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEV 335

Query: 58  TPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
           TP E  R D  + + P    L     G+ +  + GG YA   + +  + F + W   +  
Sbjct: 336 TPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMYTQ 395

Query: 117 LLQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154
            L  S ++   +P +E+Y  +     +G WD+ + VAV+P
Sbjct: 396 WLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICVAVRP 435


>UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio
           RepID=B8DR99_DESVM
          Length = 156

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M   I++  +  VAG  ++GP+ ++  K ++ L  W+  + +      ++ + +D+P+ T
Sbjct: 1   MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQVTSASTMFLGLCHDDPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E++R D +VTVP  F   E  + VI+  I   +YAVAV +         W   +   L
Sbjct: 61  PPERIRYDAMVTVPEDF---EPDDYVIVRVIRAREYAVAVHKGPYATLPWSWSALYWEWL 117

Query: 119 QDSAYEMLPKPCFEVYLNN 137
             S    L  P  E YLN+
Sbjct: 118 PVSGRTPLGAPRMEAYLND 136


>UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus
           LGP32 RepID=B7VT37_VIBSL
          Length = 280

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 20  GPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFTL 77
           G +       + QLM +V S  ++  E   + + +D+P+ T  + +R D   T+     L
Sbjct: 145 GKYNDAAATAWGQLMPFVYSNRLIQPETIMIGISHDDPNITLVDNIRYDACATIVTEMEL 204

Query: 78  PENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137
           PE   G+    I GG+YA A+ +   +  ++ +       L DS +E+  +PCFEVYLN 
Sbjct: 205 PE---GIDRKTILGGKYAKALHKGTYEKLSEAYSYLLLKWLPDSGFELRDQPCFEVYLNR 261


>UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM
          Length = 305

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 12  TVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTV 71
           TVA   + G + +  +    +L  W  +  +   E + +Y D+P+ TPA+K R D  +TV
Sbjct: 166 TVAYIRVTGEYGKNYEPATNRLYQWAGAHGLADGECLFIYLDSPEITPADKCRTDICLTV 225

Query: 72  PGYFTLPENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEMLPKP 129
           P          G+    + GG YA+ + R V D   +   W +  ++++  +  E+  +P
Sbjct: 226 PDD---TATGNGIEKRHLPGGSYAL-IRRSVTDPAQYRVYWEEIMSAVIA-AQLEIDDRP 280

Query: 130 CFEVYLNNGAEDGYWDIEMYVAV 152
           CFE Y +  A  G  D+   VAV
Sbjct: 281 CFEQYHHYDAATGKADVSFCVAV 303


>UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum
           'So ce 56' RepID=A9GLA7_SORC5
          Length = 346

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 17/143 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNI-VPKE-WVAVYYDNPD 56
           MN  +K      VA    VGP+  E +V + +++L+ W  ++++  P    +++ +DNP 
Sbjct: 189 MNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWTPDRICLSIAHDNPK 248

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYA----VAVARVVGDDFAKPWY 111
            T   K R D  + +P  F     ++G V +T+I GG+YA    V  AR +G      W 
Sbjct: 249 VTEPAKCRLDAAIVIPQDF----KADGDVNVTDIAGGKYAAGAWVGDARAIG----SAWD 300

Query: 112 QFFNSLLQDSAYEMLPKPCFEVY 134
           Q F   L +S  +   +PCFE+Y
Sbjct: 301 QLFGKWLPESGDQPDHRPCFELY 323


>UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZC1_DESAD
          Length = 153

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 19  VGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFT 76
           VGP+E+ V K +E+L  W        ++  +  VY+D+P + PA +LR +  +T+     
Sbjct: 19  VGPYEE-VGKAWEKLCAWAGPNGHFNEKTRFYGVYHDDPGQVPAAELRSEACITLENEVE 77

Query: 77  LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136
           +P    G+ L   +GG+YAV       +     W +F+   L  S       PC+E Y+N
Sbjct: 78  VPA---GIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWLPQSGETHAEAPCYEQYMN 134

Query: 137 N 137
           +
Sbjct: 135 D 135


>UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria
           RepID=A9BU22_DELAS
          Length = 326

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM-WVDSKNIVPKEWVAVYYDNPDETP 59
           M+  I    K  VA   L+GP+   + + +   +  W+ S  +  +    + YD+P  TP
Sbjct: 171 MDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTP 230

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTE-ITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           A K R D  V VP +F     + G + T+ + GG+YAVA  +   +  A  W       +
Sbjct: 231 ASKCRYDACVEVPAHFV----ASGQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWM 286

Query: 119 QDSAYEMLPKPCFEVYLNNGAED 141
             S  +   +PCFE++    A D
Sbjct: 287 PSSGMQCDDRPCFEMFSAATAMD 309


>UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp.
           JE062 RepID=B6R4C2_9RHOB
          Length = 296

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDETP 59
           E+ + E RTVA     G +++      + F  LM W   + +    E + +++D+P  T 
Sbjct: 143 EVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGLAHGAEMMCLFHDDPQVTD 202

Query: 60  AEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           AE +R  + +T+ G    P + EG V    + GG+YA     +  D     W   F   L
Sbjct: 203 AELMRFSSCLTLRG----PADVEGEVGKMMVGGGRYACGHFVITHDQSQAAWEYMFGDWL 258

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
             S YE    PCF++Y +   E G  ++ + + V+P
Sbjct: 259 PLSGYEPENIPCFQLYPSMTGEMGPHEVVICIPVRP 294


>UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3YG43_9GAMM
          Length = 327

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDE 57
           M+ ++K   ++ V     VG +E++ + + + QL+ +  ++ I    ++  A  YDNP  
Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVL 229

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP  K R +  + +P        +    +  I  GQYAV   +  G +  +    F++  
Sbjct: 230 TPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHW 289

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           L  S YE    P  E YLN+   DG+ ++E+Y+ ++
Sbjct: 290 LPQSGYEPDHFPVIEHYLNDARVDGFVEMEIYIKLK 325


>UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus
           RepID=A7GQI7_BACCN
          Length = 152

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           MN +I+   K  +A    VGP+     +  E+L  W   K  + +  +   + +DNP+ T
Sbjct: 1   MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHLDETAIVLGISHDNPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E  R D  + +     +    + V  +E+ GG+YA+       +   K W + F++LL
Sbjct: 61  PPESCRYDACIVIEKNEPI---DDFVAESELPGGKYAIYEVEHTAEAIQKAWIEIFSNLL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI 146
            +S YE+  +P FE Y+    ++   +I
Sbjct: 118 -NSDYEIDTRPVFERYMKKMVDNHLCEI 144


>UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile
           RepID=Q17ZT7_CLOD6
          Length = 306

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 20  GPWEQTVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPDETPAEKLRCDTVVTVPGYFT 76
           G    T  K  E+L  +   +N++  E    +A+Y+DNP  T   +LR    +T+P    
Sbjct: 167 GNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIV 226

Query: 77  LPENSE-GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYL 135
           + EN   G ++  I  G+Y V    +   +++  W   +N  L +  Y++     FEVYL
Sbjct: 227 VKENDNLGNMI--IPSGKYLVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYL 284

Query: 136 NN--GAEDGYWDIEMYVAVQP 154
           NN          +++Y+ ++P
Sbjct: 285 NNPHNHPQNRHLVDIYLPIEP 305


>UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria
           RepID=B3QWJ9_CHLT3
          Length = 331

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 17/161 (10%)

Query: 5   IKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIV--PKE-WVAVYYDNPDET 58
           +K   + TVA    +G +   E   +  FE+LM W   + ++  P+   ++VY+D+P+ T
Sbjct: 176 VKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDPNIT 235

Query: 59  PAEKLRCDTVVTVPGYFTLPENSE---GVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
             +KLR    ++VP       N+E    V    I GG+YAV    +   ++   W   ++
Sbjct: 236 DEQKLRTSVCISVP------PNTEVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWS 289

Query: 116 SLLQDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAVQP 154
           + L +S Y+   +  +E+YLN  N   +G   +E+ V V+P
Sbjct: 290 AWLPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPVRP 330


>UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4
          Length = 286

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 3/145 (2%)

Query: 9   EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTV 68
           + RT+A   + GP+ +       QL  W  ++ +   EW+ +Y+DNP+ TP  + R D  
Sbjct: 144 DARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLAQGEWIFIYHDNPEVTPPAQCRTDIG 203

Query: 69  VTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128
           VTVP        +  V +  I  G+YA +   +       P +Q     +  +       
Sbjct: 204 VTVPAGTV---GAGEVEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGDIVAAGLAFGDG 260

Query: 129 PCFEVYLNNGAEDGYWDIEMYVAVQ 153
           PCFE+Y +   +    D+    +VQ
Sbjct: 261 PCFELYHSVSNDPLRDDVSFCSSVQ 285


>UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria
           RepID=A5G790_GEOUR
          Length = 294

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M  E+++  K  V      G + +     +E LM +     ++  E   V + +D+P  T
Sbjct: 140 MKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMTGETLMVGIGHDDPAIT 199

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             EK+R D  VT  G    PE   G+    I GG+YAV + +       + +   F   L
Sbjct: 200 AEEKIRYDACVTFSGDVK-PEGEVGI--QTIAGGRYAVFLHKGAYTGLPEIYRNIFAGWL 256

Query: 119 QDSAYEMLPKPCFEVYLNN 137
             S   +  +PCFEVYLN 
Sbjct: 257 ATSGCTLRDQPCFEVYLNR 275


>UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae
           RepID=B6R2M9_9RHOB
          Length = 283

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 10/155 (6%)

Query: 4   EIKQEEKRTV-AGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
           EIK+  +R++ A FH    +E  V   F +L   + S+ ++ K    V +YYD+P   P 
Sbjct: 134 EIKEVPERSLQALFHRGSYFEMGVV--FSKLAAMLSSRGVIRKCGPIVGIYYDDPSLVPL 191

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++LR      VP  F    N+EG+    I GG+ AV   +         ++  +   L  
Sbjct: 192 DELRSHVGAVVPQNFA---NTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVWLPT 248

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153
           S  E   +PC+EV+LN+       D  +E+++ +Q
Sbjct: 249 SGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPLQ 283


>UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis
           pacifica SIR-1 RepID=A6GKR6_9DELT
          Length = 306

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 46  EWVAVYYDNPDETPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGD 104
           E V +Y+DNP+ T  +KLR    VTV PG     E S  + L  I  G+Y  A   +   
Sbjct: 199 EMVCIYHDNPEITEDDKLRISLGVTVAPG----TETSGEINLLTIPAGKYVCARFELTSK 254

Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQP 154
           D+A  W       L +S Y+   +P +E YL++ +ED  G   +E+ + V+P
Sbjct: 255 DYAGAWNTLMG-WLPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRMGVKP 305


>UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria
           RepID=B2SZ92_BURPP
          Length = 314

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 4/136 (2%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEK 62
           I+  E   V     VGP+ Q + K F+ L  W+   N++  +   V VYYD+P      +
Sbjct: 162 IRHVEPIEVLSVDHVGPYMQ-IGKAFDALFGWLAKHNLLAGQMRMVGVYYDDPGVVAESE 220

Query: 63  LRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           LR    V +P         S  V +  + GG+YAV   R    D    +   + + L  S
Sbjct: 221 LRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLYGTWLVQS 280

Query: 122 AYEMLPKPCFEVYLNN 137
             E    P FE YLN+
Sbjct: 281 GREAADAPVFEEYLNS 296


>UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp.
           oral taxon 786 str. D14 RepID=C6IVK7_9BACL
          Length = 304

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 19  VGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFT 76
           VG + +T +  + +L MW     + P E  ++ +  D+P  T  E+ R D  VTVP   +
Sbjct: 164 VGSYLETYQ-AWAKLGMWAAQHQLFPPEQSFIGISLDDPAVTEEEECRYDACVTVPDTLS 222

Query: 77  LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136
             +    +    + GG YA        D  A  +   F + L DS Y+   + C E  +N
Sbjct: 223 RADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWLPDSEYDPDDRYCLEFSMN 282

Query: 137 NGAED--GYWDIEMYVAVQPK 155
           + A+D  G   +++Y+ ++ +
Sbjct: 283 DPAQDPQGKAKVDLYIPIKAR 303


>UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas
           palustris RepID=B3QF69_RHOPT
          Length = 286

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 20  GPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTL 77
           GP+ + + K F  L   + ++  +P+  E +AVY D+P   P E+LR    +  PG   L
Sbjct: 146 GPYIE-IGKAFGMLFGQLAARGALPERIEMIAVYLDDPTAVPLERLRSFAALAAPGGKDL 204

Query: 78  PENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137
               E +   EI GG YAV   +    D +  +   F + L  S  E   +P  E YLN+
Sbjct: 205 DPPVERI---EIAGGDYAVLRHKGPYADMSAAYNWLFGTWLPQSDREADDRPVVEKYLNS 261


>UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum
           alkenivorans AK-01 RepID=B8FN17_DESAA
          Length = 290

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 6/148 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPK-EWVAVYYDNPDET 58
           M+  I++     V      GP+E+     +E+L    D +K + P+ + + + YD+PD T
Sbjct: 138 MDIRIEEFPPLDVVFIRHTGPYEE-CGIAWEKLCSHPDVAKELGPETQAIGICYDDPDIT 196

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A+K+R D  VT P   + PE  E      I GG+YAV       +     +   F   L
Sbjct: 197 EADKIRMDVCVTAPPSLSPPEGMEK---QTIKGGEYAVLTHHGPYEGLHDCYRWLFGEWL 253

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI 146
             S  E    P  EVY+N+  E    D+
Sbjct: 254 PSSGREANYAPSLEVYVNSPEEVAPQDL 281


>UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1
           Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN
          Length = 286

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 4   EIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPA 60
            ++ +  R +A   +VG ++ + +   F +++ +    N++      V VY+D+PD T  
Sbjct: 134 RLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMTDCTACVGVYHDDPDVTAP 193

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           EK R D  VTV   F   + +  + +  I  G+ AV   +   D   + +  FF+  L D
Sbjct: 194 EKQRADVGVTVDDQF---QPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWLPD 250

Query: 121 SAYEMLPKPCFEVYLNNGAE 140
           S +E    P +E+Y+N+ ++
Sbjct: 251 SGHEPGDFPAYEIYVNDASQ 270


>UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria
           RepID=A9KFE4_COXBN
          Length = 284

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK--NIVPK--EWVAVYYDNPD 56
           MN  IK  + R +A     G  E+ V +   +L+ W  S+  N+ PK  E     YD+P 
Sbjct: 128 MNIVIKNMQARRLAVVEHHGHPEK-VGESINKLINWAKSQAMNLKPKAGEAFGFAYDDPK 186

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  E  + D  +TVP    L  N   VI   +  G+YAVA+     D+     Y  +  
Sbjct: 187 TTEPEAFQFDLGITVPEQLKLEGN---VIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243

Query: 117 LLQDSAYEMLPKPCFEVYLN 136
            L +S  E+   PC   Y N
Sbjct: 244 WLPNSGEELGDLPCIFCYYN 263


>UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha
           proteobacterium BAL199 RepID=A8TTK0_9PROT
          Length = 330

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 11  RTVAGFHLVGP-WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVV 69
           R V  ++ +GP + +      E+ +   D+K ++      V YD+P  T  ++LR D  V
Sbjct: 192 RHVGRYNDIGPVFRRVAAIADERRLFGPDTKVMM------VAYDDPSVTDEQRLRSDAGV 245

Query: 70  TVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128
           ++    T P    G +I  EI GG YAV V +   D     +     S L +S YE   +
Sbjct: 246 SL----TDPTVDTGELIKGEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWLPNSGYEAADR 301

Query: 129 PCFEVYLNN 137
           PC +VYLN 
Sbjct: 302 PCVDVYLNK 310


>UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria
           RepID=B5WD53_9BURK
          Length = 416

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 14/129 (10%)

Query: 19  VGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEKLRCDTVVTVPGYFT 76
           VG + Q + K F+ L  W+   N++  +   + VY+D+P     + LR    V +PG   
Sbjct: 135 VGSYMQ-IGKAFDALFGWLAKHNLLAGQMRMIGVYFDDPGVVEEQALRSKAGVLLPGP-V 192

Query: 77  LPENSEGVIL------TEITGGQYAVAVARVVG--DDFAKPWYQFFNSLLQDSAYEMLPK 128
           + E + GV +      T I GG+Y  AV R VG   D    +   + + L  S  E    
Sbjct: 193 MTEVAAGVGMGGAVSVTRIRGGEY--AVLRHVGPYSDMRAAYDWLYGTWLVQSGREAADA 250

Query: 129 PCFEVYLNN 137
           P FE YLN+
Sbjct: 251 PVFEEYLNS 259


>UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3Y658_9GAMM
          Length = 302

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 26  VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG 83
           + + FE+L  W   + +  +    +AVY+ +PD TP  +LR    +T+     +P     
Sbjct: 172 IGQAFEKLSGWAGMRQLFDQTTRMMAVYFHDPDNTPEAELRSLAGITLTPE-KVPNLEAP 230

Query: 84  VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137
           +   +I  G YAV   +    D  + +  FF + L +S YE+  +P FE YLN+
Sbjct: 231 LEHYDIQSGNYAVLRYKGPYADMHRAYKWFFGTWLAESGYEVADQPPFEEYLND 284


>UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae
           RepID=Q1GMI1_SILST
          Length = 277

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
           N  ++ E  R +      GP+ + + + FE      +S+N+ P+    + VY D P E P
Sbjct: 127 NVTLRDEPARHLVTVPHRGPYAE-IGRAFEHFSALANSRNLWPQLGPVLGVYLDAPGEMP 185

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            ++LR        G  T     EG+    + GG+ AV   +      A  +   F   L 
Sbjct: 186 EDQLRSYAGAEYRGDGT----PEGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGGWLP 241

Query: 120 DSAYEMLPKPCFEVYLNN 137
            S      +PC+E+YLN+
Sbjct: 242 QSGETPADQPCYEIYLND 259


>UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio
           vulgaris RepID=A1VFK9_DESVV
          Length = 156

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           MN  I+      VA  H  GP+     + +++L  W+    ++  E  +V V  D P   
Sbjct: 1   MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTFETLFVGVLGDTPCGL 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            +E    D  V+VP +    E    V +  I GG  A  V +      A+ W   +   L
Sbjct: 61  ASESTGYDAGVSVPQHI---EADGYVSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
             S       PC EVYLN  A D   D E+   + 
Sbjct: 118 PASGRITREAPCVEVYLN--APDSTPDHELLTRLH 150


>UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral
           taxon 786 str. D14 RepID=C6IVG7_9BACL
          Length = 153

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           M +++++  +   A    VGP+     +  E++  W   +N++    +   + +DNP+ T
Sbjct: 1   MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLNHSAILLGIPWDNPETT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P +  R D  + +      P + + V + EI+GG Y V   +       + W +   + L
Sbjct: 61  PPKNCRYDACLVISQ--DEPLDDDTVHIGEISGGDYLVCTIKHTAQAMQQAWAELMPT-L 117

Query: 119 QDSAYEMLPKPCFEVY 134
           Q   Y++  +P  E Y
Sbjct: 118 QAKGYQIDDRPILERY 133


>UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria
           RepID=Q2BPM6_9GAMM
          Length = 292

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59
           N E+ + E   + G+   G + + +   F++L M+  SK ++  E   + +YY++P    
Sbjct: 139 NVEMMEFETTNLLGYEHKGDYME-IGNAFDKLFMFAGSKRLIGPETRSIGIYYNDPGSVD 197

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A +LR    ++V       E  +   L +I  G+ A  + +    +  KP+  FF   L 
Sbjct: 198 ASELRSHACISVEAPRDAEEEQDPENL-QIPAGRCATLLFKGPYAELEKPYNWFFGQWLP 256

Query: 120 DSAYEMLPKPCFEVYLNN 137
            S  E    P FE YLN+
Sbjct: 257 QSGLEAADFPPFEEYLND 274


>UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia
           RepID=B1JSX5_BURCC
          Length = 293

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 26  VKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPAEKLRCDTVVT----VPGYFTLPE 79
           V   FE++  WV    ++    + + ++YD+PD TP  +LR           P    +P 
Sbjct: 162 VGDAFERIGAWVGQHGLIGPGAKMIGIFYDDPDTTPEAQLRAKACFMPADGAPDIAPVPP 221

Query: 80  NSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGA 139
               V    I GG+YAV +      D    +   +   L+ S  E    P FE+YLN   
Sbjct: 222 ----VERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLRHSGREAADAPPFELYLNTPM 277

Query: 140 EDGYWDIE 147
           +    D+ 
Sbjct: 278 DTAPADLR 285


>UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZC0_DESAD
          Length = 297

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAE 61
           EI+  ++  V     VGP+ + V K +E+L  W   K +  +  E++ + YD+PD TP  
Sbjct: 147 EIRTRDEIQVVFIRHVGPYPK-VTKAWEKLCGWGFGKGLFSEKTEFLGLSYDDPDITPEG 205

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           K+R D   TV      P     + L  I GG+YAV       +     + + +   L  S
Sbjct: 206 KIRYDACFTVNEEVETPPE---MGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLPSS 262

Query: 122 AYEMLPK-PCFEVYLN 136
            Y++    P FE Y+ 
Sbjct: 263 GYQLKNTIPSFEKYIK 278


>UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp.
           MWYL1 RepID=A6W3J7_MARMS
          Length = 286

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 36  WVDSKNIVP---KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGG 92
           W  S  + P        + Y++P    AE  RCD    V     + +N  GVI + + GG
Sbjct: 166 WRKSSGLSPITKSRTFNIIYEDPAVVVAEDFRCDLAAEVMK--EVDDNEYGVINSTLAGG 223

Query: 93  QYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAE 140
           +YAV       D  ++  Y  +   L DS  E+   PCF  Y N+  E
Sbjct: 224 RYAVVRHFGPYDSISRCLYFLYGEWLPDSGEELGDAPCFFQYHNHFPE 271


>UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales
           bacterium HTCC2083 RepID=B6B1U3_9RHOB
          Length = 272

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 3   YEIKQEE--KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDET 58
           Y +K E+  +R +A    VG +   V K +E++      +++    +  V +YYD+P   
Sbjct: 115 YGVKVEDAPERRLAAMAHVGAY-NGVSKSYEKVAAVFTIRDLWKHARGMVGIYYDDPSTV 173

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P  +LR    V +     +P+  E V+   I G + AV V +       + +   +   L
Sbjct: 174 PEAELRSYAAVELADDVVVPDPLEEVL---IRGDESAVLVMKGAYTGLQEAYEWLYGQWL 230

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
             S      +P +E+YLN+  +    D+  ++YV +QPK
Sbjct: 231 PQSGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPLQPK 269


>UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TUU5_ALKMQ
          Length = 291

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNP 55
           +  EI++E+   +      GP+++        F++L  W D + ++     W  +Y+D  
Sbjct: 137 LKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLISSTSRWFVIYHDFG 196

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           +ET  ++LR    ++V     +   S  + +  +  GQYAV    V   ++ K WY  + 
Sbjct: 197 NETDEDQLRLSVCMSVDRNLAV---SGDIGILNLHEGQYAVGSFMVEPSEYDKAWYYMYG 253

Query: 116 SLLQDSAYEMLPKPCFEVY 134
             L  S ++   +   E Y
Sbjct: 254 KWLPTSGHKPDDRFSLEHY 272


>UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter
           litoralis Och 149 RepID=A9HPW1_9RHOB
          Length = 273

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 8   EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPAEKLRC 65
            +KR  A  H     E +V   ++++   + + N  P  +    VYYDNP+ TP E LR 
Sbjct: 129 SDKRLAALSHRGDYAEGSV--AYQKVATIISTGNHWPQTRGMAGVYYDNPEVTPTEDLRS 186

Query: 66  DTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM 125
              V   G   +P+  E V   ++TGG+YAV   +      A+ +   +   L  S   +
Sbjct: 187 HAGVLWEG-GAIPDGLEEV---QLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLSSSQESL 242

Query: 126 LPKPCFEVYLNN 137
              P FE YLN+
Sbjct: 243 RDAPSFEHYLND 254


>UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1UAH3_9DELT
          Length = 285

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDET 58
           M   +   E+  V      GP++      +  L  W   + +V  +   +A+ +D+PD T
Sbjct: 133 MEASVVNLEEMNVVFVRHTGPYKD-CNHAWSTLCGWAGPRGLVNADARILALCHDDPDVT 191

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P +K+R D  +TV G     E    + +  I GG+YA  + +    D  K + Q      
Sbjct: 192 PEDKIRYDACITVAGQ---TEVQAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQWA 248

Query: 119 QDSAYEMLPKPCFEVYLNN 137
             +  E       E+YLN 
Sbjct: 249 PQNGCEADAGASIEIYLNT 267


>UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales
           RepID=Q8A6I0_BACTN
          Length = 285

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 48  VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107
           + +Y+D+P  TPAEKLR D  + +P     P+   G     +  G+YA+ + +   D+  
Sbjct: 181 LCIYHDDPKVTPAEKLRTDVCMVMPVQVA-PKGDVG--FKTLPAGRYAIFLYKGTYDNLQ 237

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             +   +   L +    +  +P  E YLNN  E    ++  E+Y+ V+
Sbjct: 238 AVYDTIYGKCLPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPVE 285


>UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes
           RepID=Q81BV9_BACCR
          Length = 296

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKN---IVPKEWVAVYYDNP 55
           N EI   +   VA    +G +E+      K  E+L  +   +N       + + +Y+D+ 
Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T    LR    VT+    T+  N  G+++  I  G+YAV    +  D++   W   + 
Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGIMV--IPSGKYAVGHFEICQDEYKGAWDFIYG 254

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQP 154
             L +S Y+      FEVY N+  +       +++YV ++P
Sbjct: 255 EWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEP 295


>UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter
           sp. BAL39 RepID=A6EIJ9_9SPHI
          Length = 309

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 30  FEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVIL 86
           F++LM W     ++       + +Y+D+   T +E++R    + +      P +++G++ 
Sbjct: 182 FQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITASEQVRMSACIVLKE----PVSTDGLVG 237

Query: 87  T-EITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137
           T  +  G+  VA   +  D+F K W + F   L  + Y+   + CFE+Y N+
Sbjct: 238 TMTMPSGKCVVARMELAMDEFGKAWTELF-VWLNRNGYKTTERNCFEIYGND 288


>UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC
          Length = 283

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 6/139 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVY---YDNPDE 57
           MN  I +     +A    +G  ++ ++    Q + W     + P      Y   + +PD+
Sbjct: 129 MNVNIVERPAEKIAYLSHLGSPDKVLETA-AQFIAWRKETGLSPVTKSKTYGIPFADPDQ 187

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TPA++ R D   ++     +PENS GV   EI  G+YA        D      Y  F + 
Sbjct: 188 TPADEFRFDIAGSIEK--AVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRNW 245

Query: 118 LQDSAYEMLPKPCFEVYLN 136
           L +   E    P F  Y N
Sbjct: 246 LPEQPEEAGDYPVFFHYHN 264


>UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio
           magneticus RS-1 RepID=C4XUB5_DESMR
          Length = 292

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 16/144 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-------VKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
           ++  IK      VA    VGP++Q          K     +   D+K      ++ + +D
Sbjct: 137 LDVVIKTLPLMKVACVRHVGPYDQCEPAWASLCAKAGPLGLFGPDTK------FIGIGHD 190

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
           +P  TP EK+R D  +TVP  F     +  + +  I G  YA AV +    + A  +   
Sbjct: 191 DPQITPPEKIRYDACMTVPDSFA---GTPDLPVASIGGRDYASAVVKGPYTNLAPAYAWL 247

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN 137
                 D   E   +P  E+YLN+
Sbjct: 248 CGVWGPDCGREFAMEPSMEIYLND 271


>UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes
           RepID=B1KWH9_CLOBM
          Length = 302

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 10/133 (7%)

Query: 29  GFEQLMMWVDSKNIVPKEW---VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVI 85
             E+L  +   +N++ ++    +AVY+ +PD +  EK R    +++    T+   S+ + 
Sbjct: 171 SMEKLFTFAIKQNLIDEKKSKPLAVYHSHPDFSDEEKQRTSICLSIKEPITVDGKSD-IG 229

Query: 86  LTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPC--FEVYLNNGAE--D 141
              I+ G YAVA   ++  ++   W   +   L  S Y  LP+    FEVY+NN  E  +
Sbjct: 230 YMSISSGTYAVAHFEILQSEYGDAWDFLYGEWLPRSGY--LPRNYFPFEVYVNNPNEHSE 287

Query: 142 GYWDIEMYVAVQP 154
               +++Y+ ++P
Sbjct: 288 NKHIVDIYLPIEP 300


>UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134
           RepID=A1ZNF5_9SPHI
          Length = 469

 Score = 42.7 bits (99), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 10/129 (7%)

Query: 13  VAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAEKLRCDTVV 69
           +AG   +G +++     F++LM W   K ++     + + +Y+DNP+ T   KLR  T +
Sbjct: 159 LAGVMHIGEFDK-AGNMFQRLMEWGAKKRVLATSDFKAITIYHDNPNVTQTSKLRFSTCI 217

Query: 70  TVPGYFTLPENSEGVIL-TEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128
           T+    +   N++G I    +  G YAV    +  D+    W      ++++  YE    
Sbjct: 218 TI----SEDINADGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMCIWVIEN-GYEFRDG 272

Query: 129 PCFEVYLNN 137
             FE+Y N+
Sbjct: 273 DYFEMYHND 281


>UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V01_DESDG
          Length = 308

 Score = 42.4 bits (98), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPAE 61
           E+K      VA     GP+ Q  +  ++ L  W   + +V    +++ + YD+P+ T  +
Sbjct: 157 EVKVLAPVRVAFVRHTGPYAQ-CEAAWKTLCDWAFPQGLVMAQTQFMGICYDDPEVTAPD 215

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           K+R D  ++VP      +    V + E+ GG+Y  AV +         +          S
Sbjct: 216 KIRYDACISVPDNV---QAEHPVAIREVEGGEYVCAVWKGPYTGLTNAYAALCGQWGGRS 272

Query: 122 AYEMLPKPCFEVYLNN 137
             E    P  EVYLN+
Sbjct: 273 GREFRAAPSVEVYLND 288


>UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM
           12442 RepID=C3BTE5_9BACI
          Length = 303

 Score = 42.4 bits (98), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 13  VAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVT 70
           VA     G +E    + F +L+ W   K I   +   + V +D P  TP E LR D  + 
Sbjct: 159 VAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRNDCFLLGVGHDAPTITPKELLRFDCCIE 218

Query: 71  VPGYFTLPENSEGVI-LTEITGGQYA-VAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPK 128
           V      P +SEG I   ++ GGQ+A V      G +    + + +  +  +   E +  
Sbjct: 219 VDQ----PFHSEGKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQHNKNIEFVGL 274

Query: 129 PCFEVYLNNGAEDGYW--DIEMYVAVQPK 155
           P  E+Y        Y     ++YV ++ K
Sbjct: 275 PVVEIYRTTTINPSYKLNQTDIYVPIRVK 303


>UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales
           RepID=A8EWB5_ARCB4
          Length = 292

 Score = 42.4 bits (98), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 22  WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGY------F 75
           +++++KK +++L  W+ + +I   + +A+++DNP  TP E  +   +V +         F
Sbjct: 158 YDKSIKKTWQKLQTWIYTNDIKEYKQMALHHDNPIITPLEDCQYIAIVVLEDKEKASLDF 217

Query: 76  TLPE--NSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEV 133
            LP     +GV       G+Y   +  +        W   +++ L +S YE  P P + +
Sbjct: 218 LLPSLIIPKGVYAKFSLSGKYGDVIKLI-------QW--VYHTWLIESGYETTPNPSYTI 268

Query: 134 YLNNG--AEDGYWDIEMYVAVQ 153
           Y  N   ++DG + ++ Y+ ++
Sbjct: 269 YHKNHFLSDDGEFILDYYLPIR 290


>UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides
           cellulosilyticus DSM 14838 RepID=UPI00019685A1
          Length = 377

 Score = 41.6 bits (96), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 46  EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGD 104
            +V++  DNP  TP E+ R    V V G      NSEG ++L EI GG YAV   +    
Sbjct: 270 RFVSISQDNPWVTPMEQRRFYIGVLVEG----RANSEGKLLLREIPGGMYAVFRYKGSYS 325

Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136
           D  + +   +N     S Y       FEVYLN
Sbjct: 326 DLPEFYKTIYNQWFPYSMYHQKRPLTFEVYLN 357


>UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales
           RepID=A8UPH5_9FLAO
          Length = 287

 Score = 41.2 bits (95), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 48  VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107
           + + YD+P  T A+K+R D  + +      P    GV   E+ GG++AV + +     FA
Sbjct: 183 IGLPYDDPKITEADKIRYDACLIIHKD-AKPNGDVGV--KELKGGKFAVFLYQGSYKHFA 239

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNG 138
             +   FN+ L +S +E+   P  E Y+++ 
Sbjct: 240 DVYDHMFNAWLINSGHELRDAPSREKYISDA 270


>UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes
           RepID=C7M7E1_CAPOD
          Length = 289

 Score = 40.8 bits (94), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 24/138 (17%)

Query: 28  KGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG-V 84
           K +EQL   V S+ +  K  E + V YD+P  T A   R +  + +      P    G V
Sbjct: 158 KAYEQLWGVVKSQKLFTKGIESICVSYDDPKITEASLQRSEVSLAIHK----PAKPSGEV 213

Query: 85  ILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL-------LQDSAYEMLPKPCFEVYLNN 137
               + GG+YAV         F +  Y   +S+       + DS YE+  +P FE YLN+
Sbjct: 214 SCKTLAGGKYAVF--------FYQGSYTQLSSVYDAAMRWVVDSEYEVRDEPMFEKYLND 265

Query: 138 GAE--DGYWDIEMYVAVQ 153
                +G    E+Y+ VQ
Sbjct: 266 CRRTPEGKLKTEIYIPVQ 283


>UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae
           RepID=YGIV_ECO57
          Length = 160

 Score = 40.8 bits (94), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 32  QLMMWVDSKNIVP---KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88
           + +MW     + P    +   V +D+P  T  E  R D   +V     +P+N  GV   E
Sbjct: 36  KFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSE--PIPDNRYGVSNGE 93

Query: 89  ITGGQYAVAVARVVG--DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136
           +TGG+Y  AVAR VG  DD +   +      L  S  +M   P    Y N
Sbjct: 94  LTGGRY--AVARHVGELDDISHTIWGIIRHWLPASGEKMRKAPILFHYTN 141


>UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria
           RepID=B5XU59_KLEP3
          Length = 289

 Score = 40.8 bits (94), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 32  QLMMWVDSKNIVP---KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88
           + + W  +  + P    +   + +D+P  TP E  R D   TV G   + EN+ GVI  E
Sbjct: 165 RFIAWRKTSGLSPVATSDTWGIAWDDPQTTPQEAFRFDICGTVAG--PVGENAFGVINGE 222

Query: 89  ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136
           I GG+ AV       D  A   +  +   L  S   +   P +  YLN
Sbjct: 223 IPGGRCAVVRHHGSLDTLANSVWFLYRDWLPASGETLRDFPVYFRYLN 270


>UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum
           rubrum ATCC 11170 RepID=Q2RP02_RHORT
          Length = 160

 Score = 39.3 bits (90), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 14  AGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEKLRCDTVVTV 71
           A    +GP+ +   + F ++  W  S+ ++  E   + + YD+P  TPAE LR D  VT+
Sbjct: 15  ASLRHIGPYGE-AGETFRKITDWAVSEGVMTPETQILGLSYDDPKTTPAEILRYDACVTL 73

Query: 72  PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCF 131
                LP    G+ L  +    + +   +   +   + + + + +L +      +     
Sbjct: 74  KTPVALP---PGMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPTLVPIATGAI 130

Query: 132 EVYLNNGAEDGYWDI--EMYVAV 152
           E+Y+N+ A     D+  E+ VAV
Sbjct: 131 EIYVNDPATTAPADLITELGVAV 153


>UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus
           RepID=B9J2X1_BACCQ
          Length = 159

 Score = 38.9 bits (89), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 32  QLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEI 89
           +L+ W     + P E  ++ +  DNP+   +   R D  VT+P  F   E  E V    +
Sbjct: 31  KLLNWSIENKLYPPEQSFIGISLDNPELVASHMCRHDACVTIPKNFE-KEQHEDVQFKSV 89

Query: 90  TGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM-LPKPCFEVYLNNGAED--GYWDI 146
            GG YA+          ++ +   +   L +S Y     +   E  +NN AED  G   +
Sbjct: 90  DGGLYALYEFYDKPHKLSEVYRYMYAVWLPNSEYSADYDRDNLEFCMNNVAEDLEGKLKV 149

Query: 147 EMYVAVQ 153
           +++V+++
Sbjct: 150 DLFVSIK 156


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria...   210   1e-53
UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D...   205   3e-52
UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B...   196   2e-49
UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D...   193   1e-48
UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r...   193   2e-48
UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P...   186   3e-46
UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa...   185   4e-46
UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta...   180   2e-44
UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax...   178   6e-44
UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D...   177   8e-44
UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D...   177   1e-43
UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B...   177   1e-43
UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact...   176   2e-43
UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=...   175   3e-43
UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n...   175   3e-43
UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S...   173   1e-42
UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=...   173   2e-42
UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n...   172   5e-42
UniRef50_A3YG43 Transcriptional regulator, AraC family protein n...   171   6e-42
UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D...   170   2e-41
UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=...   169   3e-41
UniRef50_C8Q848 Transcription activator effector binding n=1 Tax...   169   3e-41
UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P...   167   1e-40
UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax...   166   2e-40
UniRef50_A3Y658 Transcriptional regulator, AraC family protein n...   166   2e-40
UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax...   165   6e-40
UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga...   164   7e-40
UniRef50_B8DR99 Transcription activator effector binding n=2 Tax...   164   7e-40
UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri...   164   8e-40
UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl...   162   3e-39
UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=...   162   4e-39
UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S...   161   4e-39
UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R...   161   6e-39
UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R...   160   1e-38
UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n...   160   2e-38
UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax...   159   3e-38
UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R...   158   5e-38
UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R...   158   6e-38
UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria...   158   7e-38
UniRef50_C5BHP3 Bacterial transcription activator, effector bind...   156   1e-37
UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba...   156   2e-37
UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta...   155   3e-37
UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta...   152   3e-36
UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen...   150   1e-35
UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n...   146   2e-34
UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P...   142   3e-33
UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n...   139   3e-32
UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax...   133   2e-30

Sequences not found previously or not previously below threshold:

UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des...   153   2e-36
UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D...   152   4e-36
UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F...   149   2e-35
UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De...   149   3e-35
UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R...   146   2e-34
UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba...   142   3e-33
UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p...   138   4e-32
UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S...   138   8e-32
UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n...   135   6e-31
UniRef50_A9D6E7 Putative AraC family transcriptional regulator n...   134   9e-31
UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=...   131   9e-30
UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma...   128   6e-29
UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla...   128   8e-29
UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P...   127   9e-29
UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A...   126   2e-28
UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=...   126   2e-28
UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI...   124   8e-28
UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple...   124   1e-27
UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=R...   122   3e-27
UniRef50_A6LWY8 Transcription activator, effector binding n=5 Ta...   121   5e-27
UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B...   121   6e-27
UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact...   121   9e-27
UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=...   121   1e-26
UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu...   120   2e-26
UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re...   119   3e-26
UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=...   119   3e-26
UniRef50_D1B3I6 Transcription activator effector binding protein...   118   8e-26
UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact...   117   1e-25
UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic...   117   1e-25
UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero...   115   3e-25
UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G...   115   3e-25
UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C...   112   3e-24
UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseo...   111   9e-24
UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n...   110   1e-23
UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta...   109   3e-23
UniRef50_O34775 SPBc2 prophage-derived putative transcriptional ...   109   3e-23
UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ...   108   8e-23
UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca...   108   9e-23
UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta...   107   2e-22
UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n...   106   2e-22
UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n...   104   9e-22
UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact...   104   1e-21
UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl...   103   2e-21
UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax...   103   2e-21
UniRef50_A4BA20 Transcriptional regulator, AraC family protein n...   102   5e-21
UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=M...   100   1e-20
UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C...    99   4e-20
UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A...    99   5e-20
UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ...    98   6e-20
UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus...    98   7e-20
UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C...    98   7e-20
UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta...    98   1e-19
UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T...    97   1e-19
UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re...    97   2e-19
UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L...    97   2e-19
UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales ...    96   3e-19
UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Mag...    96   4e-19
UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax...    94   2e-18
UniRef50_A3Y825 Transcriptional regulator, AraC family protein n...    92   7e-18
UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n...    91   1e-17
UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI...    91   1e-17
UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=...    90   2e-17
UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ...    89   3e-17
UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WA...    88   1e-16
UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax...    88   1e-16
UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B...    86   4e-16
UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P...    85   5e-16
UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X...    85   8e-16
UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia...    84   1e-15
UniRef50_Q9K5S9 BH4009 protein n=1 Tax=Bacillus halodurans RepID...    80   2e-14
UniRef50_A0M275 Effector binding transcriptional activator prote...    80   3e-14
UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus p...    80   3e-14
UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methano...    79   4e-14
UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methano...    79   5e-14
UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri...    78   7e-14
UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=H...    78   1e-13
UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta...    77   2e-13
UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G...    77   2e-13
UniRef50_Q2C165 Putative transcriptional regulator (AraC family ...    76   3e-13
UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavoba...    75   7e-13
UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepI...    73   3e-12
UniRef50_A3XLX8 Probable transcription regulator, MerR family pr...    73   3e-12
UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n...    73   3e-12
UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P...    73   3e-12
UniRef50_Q6MJL0 Putative uncharacterized protein n=1 Tax=Bdellov...    73   3e-12
UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B...    73   4e-12
UniRef50_A5FHW5 Transcription activator, effector binding n=2 Ta...    73   4e-12
UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bac...    72   5e-12
UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseud...    71   7e-12
UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=M...    71   7e-12
UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca...    71   8e-12
UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch...    71   1e-11
UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax...    70   2e-11
UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta...    70   2e-11
UniRef50_A5V1E8 Transcription activator, effector binding n=1 Ta...    70   2e-11
UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax...    70   2e-11
UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhod...    69   4e-11
UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax...    69   4e-11
UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=r...    69   5e-11
UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A...    68   6e-11
UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi...    68   7e-11
UniRef50_A2FCJ7 Putative uncharacterized protein n=1 Tax=Trichom...    68   8e-11
UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseud...    68   8e-11
UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ...    68   8e-11
UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=S...    68   1e-10
UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokd...    67   2e-10
UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=...    67   2e-10
UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla ma...    67   2e-10
UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B...    66   3e-10
UniRef50_B8FW41 Transcription activator effector binding n=6 Tax...    66   3e-10
UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp...    66   4e-10
UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=...    66   4e-10
UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=B...    66   5e-10
UniRef50_Q28T08 Transcription activator effector binding n=1 Tax...    66   5e-10
UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta...    65   5e-10
UniRef50_C5DA82 Transcription activator effector binding n=1 Tax...    65   6e-10
UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=u...    65   6e-10
UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A...    65   7e-10
UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytopha...    65   7e-10
UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC...    65   7e-10
UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax...    65   8e-10
UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax...    65   8e-10
UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=...    65   9e-10
UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=C...    65   1e-09
UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family pr...    64   1e-09
UniRef50_UPI0000587148 PREDICTED: hypothetical protein n=1 Tax=S...    64   2e-09
UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=...    63   2e-09
UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseu...    63   2e-09
UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1...    63   2e-09
UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=B...    63   3e-09
UniRef50_C3L2H2 Bacterial transcription activator, effector bind...    63   3e-09
UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium Re...    63   3e-09
UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavoba...    63   4e-09
UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ...    63   4e-09
UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=...    62   5e-09
UniRef50_D1AKN1 Transcription activator effector binding protein...    62   5e-09
UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 T...    62   6e-09
UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C...    62   6e-09
UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F...    62   7e-09
UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1...    62   7e-09
UniRef50_B8GJM5 Transcription activator effector binding n=1 Tax...    61   7e-09
UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales ...    61   8e-09
UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B...    61   1e-08
UniRef50_A3I8G8 Transcriptional regulator, MerR family protein n...    61   1e-08
UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=M...    61   1e-08
UniRef50_B5JDT8 Bacterial transcription activator, effector bind...    61   1e-08
UniRef50_A6UD97 Transcription activator effector binding n=14 Ta...    61   1e-08
UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croce...    61   1e-08
UniRef50_A6LWV9 Transcription activator, effector binding n=1 Ta...    60   2e-08
UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulato...    60   2e-08
UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=S...    60   3e-08
UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrop...    60   3e-08
UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=C...    59   4e-08
UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax...    59   4e-08
UniRef50_B8I6Y6 Transcriptional regulator, AraC family n=2 Tax=C...    59   4e-08
UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID...    59   4e-08
UniRef50_D0NCH1 Putative uncharacterized protein n=1 Tax=Phytoph...    59   5e-08
UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepI...    59   5e-08
UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=...    59   5e-08
UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T...    59   5e-08
UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=C...    59   6e-08
UniRef50_C5RJ11 Transcriptional regulator, MerR family n=1 Tax=C...    58   6e-08
UniRef50_D2R723 Transcription activator effector binding protein...    58   8e-08
UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 T...    58   9e-08
UniRef50_B0MJ37 Putative uncharacterized protein n=1 Tax=Anaeros...    58   1e-07
UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T...    58   1e-07
UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI...    58   1e-07
UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S...    57   2e-07
UniRef50_C3JZ42 Putative AraC family transcriptional regulator n...    57   2e-07
UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 T...    57   2e-07
UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aerom...    57   2e-07
UniRef50_C2AQJ3 Predicted transcriptional regulator n=1 Tax=Tsuk...    57   2e-07
UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staph...    57   2e-07
UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A...    57   2e-07
UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac...    57   2e-07
UniRef50_C0EVN7 Putative uncharacterized protein n=1 Tax=Eubacte...    57   2e-07
UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ...    57   2e-07
UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S...    56   3e-07
UniRef50_Q1IWD1 Transcriptional regulator, MerR family n=1 Tax=D...    56   3e-07
UniRef50_B8FZA0 Transcriptional regulator, MerR family n=2 Tax=D...    56   3e-07
UniRef50_B9YCK8 Putative uncharacterized protein n=1 Tax=Holdema...    56   3e-07
UniRef50_A2DA81 Putative uncharacterized protein n=1 Tax=Trichom...    56   4e-07
UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID...    56   4e-07
UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C...    56   5e-07
UniRef50_Q054R8 Putative uncharacterized protein n=3 Tax=Leptosp...    55   6e-07
UniRef50_D1AJG5 Transcription activator effector binding protein...    55   6e-07
UniRef50_B2TR03 Transcriptional regulator, AraC family n=5 Tax=C...    55   8e-07
UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio ...    55   9e-07
UniRef50_A6CI29 Bacterial transcription activator family protein...    55   1e-06
UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax...    55   1e-06
UniRef50_Q0W824 Putative transcription regulator (MerR family) n...    54   1e-06
UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=...    54   1e-06
UniRef50_B9QWG5 Bacterial transcription activator, effector bind...    54   1e-06
UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ...    54   1e-06
UniRef50_A9KIF5 Transcriptional regulator, MerR family n=1 Tax=C...    54   2e-06
UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19...    54   2e-06
UniRef50_B5JGT3 Bacterial transcription activator, effector bind...    53   2e-06
UniRef50_Q3DSM6 Bacterial transcription activator, effector bind...    53   3e-06
UniRef50_A8UHS9 Putative uncharacterized protein n=1 Tax=Flavoba...    53   3e-06
UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ...    53   3e-06
UniRef50_Q12WP7 AraC_E_bind-containing bacterial regulation effe...    53   3e-06
UniRef50_Q188Y0 Putative uncharacterized protein n=6 Tax=Clostri...    53   3e-06

>UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI
          Length = 157

 Score =  210 bits (535), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA
Sbjct: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD
Sbjct: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157
           SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH
Sbjct: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157


>UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72FD7_DESVH
          Length = 326

 Score =  205 bits (522), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
           M+  I++  +  VA    VGP+ + T+   + +LM W  ++ ++    + + V +D+P+ 
Sbjct: 170 MDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPGVKTLGVSWDDPEV 229

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E  R D  + +       E   G    E+ GG YAV    V    F + W + F   
Sbjct: 230 TPPEHCRYDACIVIAPGV---EVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFGQW 286

Query: 118 LQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154
           L  S  +   +PCFE+Y  +     +G WD+ + + V+P
Sbjct: 287 LPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPVRP 325


>UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria
           RepID=B3QWJ9_CHLT3
          Length = 331

 Score =  196 bits (499), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPD 56
             +K   + TVA    +G +   E   +  FE+LM W   + ++       ++VY+D+P+
Sbjct: 174 VTVKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDPN 233

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  +KLR    ++VP      E    V    I GG+YAV    +   ++   W   +++
Sbjct: 234 ITDEQKLRTSVCISVPPN---TEVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWSA 290

Query: 117 LLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQP 154
            L +S Y+   +  +E+YLNN     +G   +E+ V V+P
Sbjct: 291 WLPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPVRP 330


>UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM
          Length = 436

 Score =  193 bits (491), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           MN E+ +     VA    +GP+  +T+   + +LM W   + ++        V +DNP+ 
Sbjct: 276 MNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEV 335

Query: 58  TPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
           TP E  R D  + + P    L     G+ +  + GG YA   + +  + F + W   +  
Sbjct: 336 TPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMYTQ 395

Query: 117 LLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQP 154
            L  S ++   +P +E+Y +      +G WD+ + VAV+P
Sbjct: 396 WLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICVAVRP 435


>UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UFH4_YERRU
          Length = 159

 Score =  193 bits (491), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 1/155 (0%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M + I ++    V    +VGP+ +T+ +GF QL  W     I  + W+A+Y+DNP+ TPA
Sbjct: 1   MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSWHQHHQIPAQTWLALYWDNPETTPA 60

Query: 61  EKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +LR D   +V   F LP N SEGV+L  I GG YAV   RV+  D+AK W + +   L 
Sbjct: 61  AELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQHLP 120

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
            S Y      C+EVYLN+G  DGY+DI++Y +V+P
Sbjct: 121 ASGYVPAEGACYEVYLNDGQADGYFDIDIYQSVEP 155


>UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria
           RepID=A9BU22_DELAS
          Length = 326

 Score =  186 bits (472), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPKEWVAVYYDNPDETP 59
           M+  I    K  VA   L+GP+   + + +   +  W+ S  +  +    + YD+P  TP
Sbjct: 171 MDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTP 230

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A K R D  V VP +F     S  V    + GG+YAVA  +   +  A  W       + 
Sbjct: 231 ASKCRYDACVEVPAHFV---ASGQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWMP 287

Query: 120 DSAYEMLPKPCFEVYL---NNGAEDGYWDIEMYVAVQP 154
            S  +   +PCFE++       A+ G +  ++ + V+ 
Sbjct: 288 SSGMQCDDRPCFEMFSAATAMDADTGEFCCDICIPVRA 325


>UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp.
           oral taxon 786 str. D14 RepID=C6IVK7_9BACL
          Length = 304

 Score =  185 bits (470), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 5/159 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M   I +      A    VG + +T  + + +L MW     + P E  ++ +  D+P  T
Sbjct: 146 MQATIVELPLMEAAYVRHVGSYLETY-QAWAKLGMWAAQHQLFPPEQSFIGISLDDPAVT 204

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             E+ R D  VTVP   +  +    +    + GG YA        D  A  +   F + L
Sbjct: 205 EEEECRYDACVTVPDTLSRADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWL 264

Query: 119 QDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQPK 155
            DS Y+   + C E  +N+ A+D  G   +++Y+ ++ +
Sbjct: 265 PDSEYDPDDRYCLEFSMNDPAQDPQGKAKVDLYIPIKAR 303


>UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp.
           JE062 RepID=B6R4C2_9RHOB
          Length = 296

 Score =  180 bits (456), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDE 57
             E+ + E RTVA     G +++      + F  LM W   + +    E + +++D+P  
Sbjct: 141 KVEVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGLAHGAEMMCLFHDDPQV 200

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T AE +R  + +T+ G   +      V    + GG+YA     +  D     W   F   
Sbjct: 201 TDAELMRFSSCLTLRGPADVE---GEVGKMMVGGGRYACGHFVITHDQSQAAWEYMFGDW 257

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           L  S YE    PCF++Y +   E G  ++ + + V+P
Sbjct: 258 LPLSGYEPENIPCFQLYPSMTGEMGPHEVVICIPVRP 294


>UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea
           psychrophila RepID=Q6ALR9_DESPS
          Length = 155

 Score =  178 bits (451), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDET 58
           MN +IK+  +  VA    +G + E+T K+ F +L+ W + K  +     + +Y+DNP+ T
Sbjct: 1   MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGTILGLYWDNPETT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P EK R D  +TVP           + +  I+GGQYAV    +  + F + W   F+   
Sbjct: 61  PPEKCRTDACITVPDG---TLAEGTIGVQLISGGQYAVCHFEITAEGFQQAWKDAFS-WF 116

Query: 119 QDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQ 153
               YE   KPC+E++ NNG E  DG W  ++ + ++
Sbjct: 117 IGKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPLK 153


>UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1UAH3_9DELT
          Length = 285

 Score =  177 bits (450), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDET 58
           M   +   E+  V      GP++      +  L  W   + +V      +A+ +D+PD T
Sbjct: 133 MEASVVNLEEMNVVFVRHTGPYKD-CNHAWSTLCGWAGPRGLVNADARILALCHDDPDVT 191

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P +K+R D  +TV G     E    + +  I GG+YA  + +    D  K + Q      
Sbjct: 192 PEDKIRYDACITVAGQ---TEVQAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQWA 248

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             +  E       E+YLN   +    ++  E+YV ++
Sbjct: 249 PQNGCEADAGASIEIYLNTPDKTAPEELRTEVYVPLK 285


>UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum
           alkenivorans AK-01 RepID=B8FN17_DESAA
          Length = 290

 Score =  177 bits (448), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPK-EWVAVYYDNPDET 58
           M+  I++     V      GP+E+     +E+L    D +K + P+ + + + YD+PD T
Sbjct: 138 MDIRIEEFPPLDVVFIRHTGPYEE-CGIAWEKLCSHPDVAKELGPETQAIGICYDDPDIT 196

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A+K+R D  VT P   + PE   G+    I GG+YAV       +     +   F   L
Sbjct: 197 EADKIRMDVCVTAPPSLSPPE---GMEKQTIKGGEYAVLTHHGPYEGLHDCYRWLFGEWL 253

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             S  E    P  EVY+N+  E    D+  E+ V ++
Sbjct: 254 PSSGREANYAPSLEVYVNSPEEVAPQDLITEIRVPLK 290


>UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria
           RepID=A5G790_GEOUR
          Length = 294

 Score =  177 bits (448), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M  E+++  K  V      G + +     +E LM +     ++  E   V + +D+P  T
Sbjct: 140 MKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMTGETLMVGIGHDDPAIT 199

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             EK+R D  VT  G          V +  I GG+YAV + +       + +   F   L
Sbjct: 200 AEEKIRYDACVTFSGDVK---PEGEVGIQTIAGGRYAVFLHKGAYTGLPEIYRNIFAGWL 256

Query: 119 QDSAYEMLPKPCFEVYLN-NGAEDGYWDI--EMYVAV 152
             S   +  +PCFEVYLN +       ++  E++V V
Sbjct: 257 ATSGCTLRDQPCFEVYLNRDPRRTKPENLRTEIWVPV 293


>UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae
           RepID=A1JN27_YERE8
          Length = 157

 Score =  176 bits (446), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M ++I +++ + +    +VGP+ +T+ KGF+QL        I  K+W+ +Y+DNP+  P 
Sbjct: 1   MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKDWLVLYWDNPETNPP 60

Query: 61  EKLRCDTVVTVPGYFTLP-ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +LR D  ++V   + LP E S+ + L  I  G YAV   RV  DD+AK W + +N  L 
Sbjct: 61  AELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQHLP 120

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            S Y      C+EVYLN+G  DGY+DI++Y +V+
Sbjct: 121 QSGYRPTEGACYEVYLNDGRADGYFDIDIYQSVE 154


>UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes
           RepID=Q81BV9_BACCR
          Length = 296

 Score =  175 bits (445), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKN---IVPKEWVAVYYDNP 55
           N EI   +   VA    +G +E+      K  E+L  +   +N       + + +Y+D+ 
Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T    LR    VT+    T+  N  G+++  I  G+YAV    +  D++   W   + 
Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGIMV--IPSGKYAVGHFEICQDEYKGAWDFIYG 254

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQP 154
             L +S Y+      FEVY N+  +       +++YV ++P
Sbjct: 255 EWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEP 295


>UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1
           Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN
          Length = 286

 Score =  175 bits (445), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
             ++ +  R +A   +VG ++ + +   F +++ +    N++      V VY+D+PD T 
Sbjct: 133 VRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMTDCTACVGVYHDDPDVTA 192

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            EK R D  VTV   F   + +  + +  I  G+ AV   +   D   + +  FF+  L 
Sbjct: 193 PEKQRADVGVTVDDQF---QPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWLP 249

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAV 152
           DS +E    P +E+Y+N+ ++     W  ++ V +
Sbjct: 250 DSGHEPGDFPAYEIYVNDASQLPPDQWLTDICVPL 284


>UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum
           'So ce 56' RepID=A9GLA7_SORC5
          Length = 346

 Score =  173 bits (439), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPD 56
           MN  +K      VA    VGP+    +V + +++L+ W  ++++   +   +++ +DNP 
Sbjct: 189 MNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWTPDRICLSIAHDNPK 248

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T   K R D  + +P  F        V +T+I GG+YA              W Q F  
Sbjct: 249 VTEPAKCRLDAAIVIPQDFK---ADGDVNVTDIAGGKYAAGAWVGDARAIGSAWDQLFGK 305

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
            L +S  +   +PCFE+Y     +    +   E+ + V+P
Sbjct: 306 WLPESGDQPDHRPCFELYRGEFHDPKTHNFRCELCLPVRP 345


>UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria
           RepID=B2SZ92_BURPP
          Length = 314

 Score =  173 bits (438), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59
              I+  E   V     VGP+ Q + K F+ L  W+   N++  +   V VYYD+P    
Sbjct: 159 EVVIRHVEPIEVLSVDHVGPYMQ-IGKAFDALFGWLAKHNLLAGQMRMVGVYYDDPGVVA 217

Query: 60  AEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             +LR    V +P         S  V +  + GG+YAV   R    D    +   + + L
Sbjct: 218 ESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLYGTWL 277

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
             S  E    P FE YLN+  +    D+  E+ + +
Sbjct: 278 VQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPL 313


>UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis
           pacifica SIR-1 RepID=A6GKR6_9DELT
          Length = 306

 Score =  172 bits (435), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55
           +  ++   ++ +A    VGP+       +  + +   W   + ++     E V +Y+DNP
Sbjct: 149 SINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCAWAGPRGLLGAPNSEMVCIYHDNP 208

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T  +KLR    VTV       E S  + L  I  G+Y  A   +   D+A  W     
Sbjct: 209 EITEDDKLRISLGVTVAPG---TETSGEINLLTIPAGKYVCARFELTSKDYAGAWNTLMG 265

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAED--GYWDIEMYVAVQP 154
             L +S Y+   +P +E YL++ +ED  G   +E+ + V+P
Sbjct: 266 -WLPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRMGVKP 305


>UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3YG43_9GAMM
          Length = 327

 Score =  171 bits (434), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDE 57
           M+ ++K   ++ V     VG +E++ + + + QL+ +  ++ I    ++  A  YDNP  
Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVL 229

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP  K R +  + +P        +    +  I  GQYAV   +  G +  +    F++  
Sbjct: 230 TPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHW 289

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           L  S YE    P  E YLN+   DG+ ++E+Y+ ++ 
Sbjct: 290 LPQSGYEPDHFPVIEHYLNDARVDGFVEMEIYIKLKA 326


>UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZC0_DESAD
          Length = 297

 Score =  170 bits (430), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
             EI+  ++  V     VGP+ + V K +E+L  W   K +  +  E++ + YD+PD TP
Sbjct: 145 EVEIRTRDEIQVVFIRHVGPYPK-VTKAWEKLCGWGFGKGLFSEKTEFLGLSYDDPDITP 203

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             K+R D   TV      P     + L  I GG+YAV       +     + + +   L 
Sbjct: 204 EGKIRYDACFTVNEEVETPP---EMGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLP 260

Query: 120 DSAYEMLPK-PCFEVYLNNGAEDGYWD--IEMYVAV 152
            S Y++    P FE Y+    +    +   E+++AV
Sbjct: 261 SSGYQLKNTIPSFEKYIKVPPDVPPEEAVTEIWLAV 296


>UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus
           LGP32 RepID=B7VT37_VIBSL
          Length = 280

 Score =  169 bits (428), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           MN  +   +   V      G +       + QLM +V S  ++  E   + + +D+P+ T
Sbjct: 126 MNINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLIQPETIMIGISHDDPNIT 185

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             + +R D   T+     LPE   G+    I GG+YA A+ +   +  ++ +       L
Sbjct: 186 LVDNIRYDACATIVTEMELPE---GIDRKTILGGKYAKALHKGTYEKLSEAYSYLLLKWL 242

Query: 119 QDSAYEMLPKPCFEVYLN-NGAEDGYWDI--EMYVAVQ 153
            DS +E+  +PCFEVYLN +       ++  E+Y+ ++
Sbjct: 243 PDSGFELRDQPCFEVYLNRDPRRTKPENLKTEIYIPIK 280


>UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b
           RepID=C8Q848_9ENTR
          Length = 153

 Score =  169 bits (428), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 2/154 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M   I +   +   G+ L GPW++TV +GF QL  WV +++ +  EW+A+YY NP   P 
Sbjct: 1   MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWV-ARHALQGEWMAIYYGNPQVVPP 59

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++L  +TV+TVP  F L    EG+    + GG Y      V  +DF   W  FF  L Q 
Sbjct: 60  QELSVETVLTVPADFALAVG-EGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQQR 118

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           S +++  +PC+E YL++G++ G W + MY+ V+P
Sbjct: 119 SDWQVDDRPCYEHYLSDGSQSGNWLLNMYIPVRP 152


>UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria
           RepID=B5WD53_9BURK
          Length = 416

 Score =  167 bits (423), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 10/159 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59
              I+  E   +     VG + Q + K F+ L  W+   N++  +   + VY+D+P    
Sbjct: 118 EVVIRYVEPMEILSVDHVGSYMQ-IGKAFDALFGWLAKHNLLAGQMRMIGVYFDDPGVVE 176

Query: 60  AEKLRCDTVVTVPGYFTLPENSE-----GVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
            + LR    V +PG       +       V +T I GG+YAV        D    +   +
Sbjct: 177 EQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAAYDWLY 236

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVA 151
            + L  S  E    P FE YLN+  E    ++  E+ +A
Sbjct: 237 GTWLVQSGREAADAPVFEEYLNSPKETAPAELVTEICLA 275


>UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZC1_DESAD
          Length = 153

 Score =  166 bits (421), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           M+ +I   +   +A    VGP+E+ V K +E+L  W        +   +  VY+D+P + 
Sbjct: 1   MDVQIWTLDPAKMAYAEHVGPYEE-VGKAWEKLCAWAGPNGHFNEKTRFYGVYHDDPGQV 59

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           PA +LR +  +T+     +P    G+ L   +GG+YAV       +     W +F+   L
Sbjct: 60  PAAELRSEACITLENEVEVP---AGIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWL 116

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGY-WDIEM-YVAVQ 153
             S       PC+E Y+N+         + +  + ++
Sbjct: 117 PQSGETHAEAPCYEQYMNDPNNTKPEHLVTILLMPLK 153


>UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3Y658_9GAMM
          Length = 302

 Score =  166 bits (421), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 2   NYEIKQEE-KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           +  I Q +    +  +   G +   + + FE+L  W   + +  +    +AVY+ +PD T
Sbjct: 148 SVSISQLDTPIHMVVYPHQGSYM-NIGQAFEKLSGWAGMRQLFDQTTRMMAVYFHDPDNT 206

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P  +LR    +T+     +P     +   +I  G YAV   +    D  + +  FF + L
Sbjct: 207 PEAELRSLAGITLTPE-KVPNLEAPLEHYDIQSGNYAVLRYKGPYADMHRAYKWFFGTWL 265

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            +S YE+  +P FE YLN+  +    D+  ++Y+ ++
Sbjct: 266 AESGYEVADQPPFEEYLNDPRQVAPNDLLTDIYMPLK 302


>UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus
           RepID=A7GQI7_BACCN
          Length = 152

 Score =  165 bits (417), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           MN +I+   K  +A    VGP+     +  E+L  W   K  + +  +   + +DNP+ T
Sbjct: 1   MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHLDETAIVLGISHDNPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E  R D  + +          + V  +E+ GG+YA+       +   K W + F++LL
Sbjct: 61  PPESCRYDACIVIEKN---EPIDDFVAESELPGGKYAIYEVEHTAEAIQKAWIEIFSNLL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
            +S YE+  +P FE Y+    ++     E+ V ++ K
Sbjct: 118 -NSDYEIDTRPVFERYMKKMVDN--HLCEICVPIRAK 151


>UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria
           RepID=Q2BPM6_9GAMM
          Length = 292

 Score =  164 bits (416), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59
           N E+ + E   + G+   G + + +   F++L M+  SK ++  E   + +YY++P    
Sbjct: 139 NVEMMEFETTNLLGYEHKGDYME-IGNAFDKLFMFAGSKRLIGPETRSIGIYYNDPGSVD 197

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A +LR    ++V       E  +   L  I  G+ A  + +    +  KP+  FF   L 
Sbjct: 198 ASELRSHACISVEAPRDAEEEQDPENLQ-IPAGRCATLLFKGPYAELEKPYNWFFGQWLP 256

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146
            S  E    P FE YLN+       ++
Sbjct: 257 QSGLEAADFPPFEEYLNDPRTTAPSEL 283


>UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio
           RepID=B8DR99_DESVM
          Length = 156

 Score =  164 bits (416), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M   I++  +  VAG  ++GP+ ++  K ++ L  W+  + +      ++ + +D+P+ T
Sbjct: 1   MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQVTSASTMFLGLCHDDPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E++R D +VTVP  F   E  + VI+  I   +YAVAV +         W   +   L
Sbjct: 61  PPERIRYDAMVTVPEDF---EPDDYVIVRVIRAREYAVAVHKGPYATLPWSWSALYWEWL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
             S    L  P  E YLN+       ++   +Y+ + P
Sbjct: 118 PVSGRTPLGAPRMEAYLNDPGATPEDELLTHLYLPLAP 155


>UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria
           RepID=A8FZF8_SHESH
          Length = 300

 Score =  164 bits (415), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 5/151 (3%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKL 63
           E    E  T+A   + GP+ Q  ++  + L  W  +K    +  + +Y+DNP+ TP EK 
Sbjct: 153 ETTTIEAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENAIFIYHDNPEITPDEKC 212

Query: 64  RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAKPWYQFFNSLLQDSA 122
           R D    VP      + S  V L    GG YA     V   +++ + W +    L+ D+ 
Sbjct: 213 RTDICFRVPAD---TQASGRVELQVFPGGSYAYIRQTVKQMNEYGQAWSELM-KLVVDTG 268

Query: 123 YEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            E   +PCFE+Y +   +    D+    AV+
Sbjct: 269 LESDERPCFELYHSFDPQTYVSDVSFCTAVK 299


>UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile
           RepID=Q17ZT7_CLOD6
          Length = 306

 Score =  162 bits (411), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 9/161 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55
             EI + +          G +     T  K  E+L  +   +N++     + +A+Y+DNP
Sbjct: 146 EIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNP 205

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
             T   +LR    +T+P    + EN   +    I  G+Y V    +   +++  W   +N
Sbjct: 206 QFTQEHQLRTSICMTIPDNIVVKENDN-LGNMIIPSGKYLVGHFDISKSEYSDAWDFMYN 264

Query: 116 SLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQP 154
             L +  Y++     FEVYLNN          +++Y+ ++P
Sbjct: 265 EWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPIEP 305


>UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia
           RepID=B1JSX5_BURCC
          Length = 293

 Score =  162 bits (410), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 5/156 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
             EI++            G + + V   FE++  WV    ++    + + ++YD+PD TP
Sbjct: 139 EVEIRRLPALRGYAVTHTGAYMK-VGDAFERIGAWVGQHGLIGPGAKMIGIFYDDPDTTP 197

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             +LR                   V    I GG+YAV +      D    +   +   L+
Sbjct: 198 EAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLR 257

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S  E    P FE+YLN   +    D+  E+++ ++
Sbjct: 258 HSGREAADAPPFELYLNTPMDTAPADLRTEIHLPLR 293


>UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4
          Length = 286

 Score =  161 bits (409), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 3/150 (2%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKL 63
           +  + + RT+A   + GP+ +       QL  W  ++ +   EW+ +Y+DNP+ TP  + 
Sbjct: 139 KTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLAQGEWIFIYHDNPEVTPPAQC 198

Query: 64  RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAY 123
           R D  VTVP        +  V +  I  G+YA +   +       P +Q     +  +  
Sbjct: 199 RTDIGVTVPAG---TVGAGEVEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGDIVAAGL 255

Query: 124 EMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
                PCFE+Y +   +    D+    +VQ
Sbjct: 256 AFGDGPCFELYHSVSNDPLRDDVSFCSSVQ 285


>UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae
           RepID=B6R2M9_9RHOB
          Length = 283

 Score =  161 bits (408), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPA 60
            EIK+  +R++      G + + +   F +L   + S+ ++      V +YYD+P   P 
Sbjct: 133 VEIKEVPERSLQALFHRGSYFE-MGVVFSKLAAMLSSRGVIRKCGPIVGIYYDDPSLVPL 191

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++LR      VP  F    N+EG+    I GG+ AV   +         ++  +   L  
Sbjct: 192 DELRSHVGAVVPQNFA---NTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVWLPT 248

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153
           S  E   +PC+EV+LN+       D  +E+++ +Q
Sbjct: 249 SGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPLQ 283


>UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales
           bacterium HTCC2083 RepID=B6B1U3_9RHOB
          Length = 272

 Score =  160 bits (406), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPA 60
            +++   +R +A    VG +   V K +E++      +++    +  V +YYD+P   P 
Sbjct: 117 VKVEDAPERRLAAMAHVGAY-NGVSKSYEKVAAVFTIRDLWKHARGMVGIYYDDPSTVPE 175

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
            +LR    V +     +P+  E V+   I G + AV V +       + +   +   L  
Sbjct: 176 AELRSYAAVELADDVVVPDPLEEVL---IRGDESAVLVMKGAYTGLQEAYEWLYGQWLPQ 232

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
           S      +P +E+YLN+  +    D+  ++YV +QPK
Sbjct: 233 SGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPLQPK 269


>UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha
           proteobacterium BAL199 RepID=A8TTK0_9PROT
          Length = 330

 Score =  160 bits (404), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           ++   ++      A    VG +   +   F ++    D + +     + + V YD+P  T
Sbjct: 176 LDVSTREFPTYPFAFLRHVGRYND-IGPVFRRVAAIADERRLFGPDTKVMMVAYDDPSVT 234

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             ++LR D  V++        ++  +I  EI GG YAV V +   D     +     S L
Sbjct: 235 DEQRLRSDAGVSLTDP---TVDTGELIKGEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWL 291

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            +S YE   +PC +VYLN   +    D+  E+ V ++
Sbjct: 292 PNSGYEAADRPCVDVYLNKVEDTRPEDLLTEIRVPIR 328


>UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium
           carotovorum subsp. carotovorum RepID=C6DEF0_PECCP
          Length = 154

 Score =  159 bits (402), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M+  I+  E   V    +VGP+ + + +GF++++ W    ++   + +A Y+D+P +  A
Sbjct: 1   MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSIDKSLAFYWDDPSKVEA 60

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++LR D  +T     +      G+    I GG YAV    V   DFAK W  F+ + +  
Sbjct: 61  DELRADVAITCKEMPSTLPEDVGIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA-INA 119

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
             Y      C+E YL +G+ +G WDIE++ +V+ 
Sbjct: 120 QGYCPAGDICYESYLCDGS-NGKWDIEIWQSVEA 152


>UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae
           RepID=Q1GMI1_SILST
          Length = 277

 Score =  158 bits (400), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           N  ++ E  R +      GP+ + + + FE      +S+N+ P     + VY D P E P
Sbjct: 127 NVTLRDEPARHLVTVPHRGPYAE-IGRAFEHFSALANSRNLWPQLGPVLGVYLDAPGEMP 185

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            ++LR        G  T     EG+    + GG+ AV   +      A  +   F   L 
Sbjct: 186 EDQLRSYAGAEYRGDGT----PEGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGGWLP 241

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S      +PC+E+YLN+       ++  E+ + ++
Sbjct: 242 QSGETPADQPCYEIYLNDPRATAPEELLTEIVLPLR 277


>UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas
           palustris RepID=B3QF69_RHOPT
          Length = 286

 Score =  158 bits (399), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
           + EI++ +          GP+ + + K F  L   + ++  +P+  E +AVY D+P   P
Sbjct: 128 SIEIQRFDAIPAFAIRHDGPYIE-IGKAFGMLFGQLAARGALPERIEMIAVYLDDPTAVP 186

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+LR    +  PG   L      V   EI GG YAV   +    D +  +   F + L 
Sbjct: 187 LERLRSFAALAAPGGKDL---DPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGTWLP 243

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S  E   +P  E YLN+  +    D+  ++ + ++
Sbjct: 244 QSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLR 279


>UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM
          Length = 305

 Score =  158 bits (399), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 7   QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCD 66
                TVA   + G + +  +    +L  W  +  +   E + +Y D+P+ TPA+K R D
Sbjct: 161 TLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHGLADGECLFIYLDSPEITPADKCRTD 220

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSLLQDSAYEM 125
             +TVP          G+    + GG YA+    V     +   W +  ++++  +  E+
Sbjct: 221 ICLTVPDD---TATGNGIEKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSAVI-AAQLEI 276

Query: 126 LPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             +PCFE Y +  A  G  D+   VAV
Sbjct: 277 DDRPCFEQYHHYDAATGKADVSFCVAV 303


>UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein;
           putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9
          Length = 155

 Score =  156 bits (396), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 4/155 (2%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M   I     + +    + GP+ Q++  GFE+LM W     +   +W+A+YYDNP E   
Sbjct: 1   MQVRIVSLAAQPLFVLRVQGPFAQSLGPGFERLMAWSARHGL-RGQWMALYYDNPREVAP 59

Query: 61  EKLRCDTVVTVPGYFTLPENSE--GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           + LR D  +T     TLP + E  G+    + GG YA+A  RV  +DFA PW   F+  L
Sbjct: 60  DALRADVALTT-ASVTLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQAL 118

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
               Y     PCFE YL++G   G W +E+ V V+
Sbjct: 119 PACGYRPDGGPCFERYLSDGRGSGEWLLELGVPVR 153


>UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales
           RepID=Q8A6I0_BACTN
          Length = 285

 Score =  156 bits (395), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           +  EIK    R V    L G ++       + +L  ++  + +   ++  + +Y+D+P  
Sbjct: 131 LKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKLPMGDFSPLCIYHDDPKV 190

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TPAEKLR D  + +P           V    +  G+YA+ + +   D+    +   +   
Sbjct: 191 TPAEKLRTDVCMVMPVQVA---PKGDVGFKTLPAGRYAIFLYKGTYDNLQAVYDTIYGKC 247

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L +    +  +P  E YLNN  E    ++  E+Y+ V+
Sbjct: 248 LPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPVE 285


>UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TUU5_ALKMQ
          Length = 291

 Score =  155 bits (393), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE---QTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNP 55
           +  EI++E+   +      GP++   +     F++L  W D + ++     W  +Y+D  
Sbjct: 137 LKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLISSTSRWFVIYHDFG 196

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           +ET  ++LR    ++V     +   S  + +  +  GQYAV    V   ++ K WY  + 
Sbjct: 197 NETDEDQLRLSVCMSVDRNLAV---SGDIGILNLHEGQYAVGSFMVEPSEYDKAWYYMYG 253

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             L  S ++   +   E Y     +     +E+Y+ +
Sbjct: 254 KWLPTSGHKPDDRFSLEHYPKVEEQGDKRLVEIYIPI 290


>UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V01_DESDG
          Length = 308

 Score =  153 bits (387), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDET 58
           +  E+K      VA     GP+ Q  +  ++ L  W   + +V    +++ + YD+P+ T
Sbjct: 154 LEPEVKVLAPVRVAFVRHTGPYAQ-CEAAWKTLCDWAFPQGLVMAQTQFMGICYDDPEVT 212

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             +K+R D  ++VP      +    V + E+ GG+Y  AV +         +        
Sbjct: 213 APDKIRYDACISVPDNV---QAEHPVAIREVEGGEYVCAVWKGPYTGLTNAYAALCGQWG 269

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
             S  E    P  EVYLN+       ++  E+ + + P+
Sbjct: 270 GRSGREFRAAPSVEVYLNDCTSTPEQELLTEIRMPLMPR 308


>UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio
           vulgaris RepID=A1VFK9_DESVV
          Length = 156

 Score =  152 bits (385), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           MN  I+      VA  H  GP+     + +++L  W+    ++  E  +V V  D P   
Sbjct: 1   MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTFETLFVGVLGDTPCGL 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            +E    D  V+VP +    E    V +  I GG  A  V +      A+ W   +   L
Sbjct: 61  ASESTGYDAGVSVPQHI---EADGYVSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
             S       PC EVYLN        ++   +++ + P
Sbjct: 118 PASGRITREAPCVEVYLNAPDSTPDHELLTRLHLPLSP 155


>UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor
           n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB
          Length = 299

 Score =  152 bits (384), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           +  IK     T+A     G + + + K FE+L   + S+ ++       A+YY +P    
Sbjct: 145 DVAIKTLPSETLAVLPHRGAYME-IGKAFEKLFGILVSRQVIGQIGAMKALYYSDPTHVA 203

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            + L+      +   F +      +   E  GG YAV   +    D    +   +   L 
Sbjct: 204 EDDLQSAAGAVIGDGFPVE---APLETRETRGGDYAVLRYKGPYADMKWAYEWLYGEWLT 260

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
            S  E    PC EVYLNN  +    D+  ++ + ++P
Sbjct: 261 QSGREPDDAPCLEVYLNNPRDTAPADLLTDICLPLKP 297


>UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral
           taxon 786 str. D14 RepID=C6IVG7_9BACL
          Length = 153

 Score =  150 bits (379), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           M +++++  +   A    VGP+     +  E++  W   +N++    +   + +DNP+ T
Sbjct: 1   MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLNHSAILLGIPWDNPETT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P +  R D  + +      P + + V + EI+GG Y V   +       + W +   + L
Sbjct: 61  PPKNCRYDACLVISQD--EPLDDDTVHIGEISGGDYLVCTIKHTAQAMQQAWAELMPT-L 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
           Q   Y++  +P  E Y   G        E+ V +
Sbjct: 118 QAKGYQIDDRPILERY--TGEMLLKEFCEICVPI 149


>UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes
           RepID=B1KWH9_CLOBM
          Length = 302

 Score =  149 bits (377), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKEW---VAVYYDNPD 56
           + +I   +   V     +G ++         E+L  +   +N++ ++    +AVY+ +PD
Sbjct: 142 DVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEKKSKPLAVYHSHPD 201

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            +  EK R    +++    T+   S+ +    I+ G YAVA   ++  ++   W   +  
Sbjct: 202 FSDEEKQRTSICLSIKEPITVDGKSD-IGYMSISSGTYAVAHFEILQSEYGDAWDFLYGE 260

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQP 154
            L  S Y       FEVY+NN  E  +    +++Y+ ++P
Sbjct: 261 WLPRSGYLPRNYFPFEVYVNNPNEHSENKHIVDIYLPIEP 300


>UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio
           magneticus RS-1 RepID=C4XUB5_DESMR
          Length = 292

 Score =  149 bits (376), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           ++  IK      VA    VGP++Q  +  +  L        +     +++ + +D+P  T
Sbjct: 137 LDVVIKTLPLMKVACVRHVGPYDQ-CEPAWASLCAKAGPLGLFGPDTKFIGIGHDDPQIT 195

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P EK+R D  +TVP  F    +   + +  I G  YA AV +    + A  +        
Sbjct: 196 PPEKIRYDACMTVPDSFAGTPD---LPVASIGGRDYASAVVKGPYTNLAPAYAWLCGVWG 252

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
            D   E   +P  E+YLN+        +  E+ V V P
Sbjct: 253 PDCGREFAMEPSMEIYLNDPKTTPPDQLLTEILVPVGP 290


>UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE
          Length = 315

 Score =  146 bits (370), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDET 58
             E+K+           +G +++ + K +E+L+ W + + +      +   V +D+P  T
Sbjct: 162 KIEVKEMPDMKAVYCRHMGAFKE-IVKAYEKLIKWAEPRGLYIPNVTKSATVTHDDPSVT 220

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
              K+R    + V G          +    I GG+YAV    +  +DF K W        
Sbjct: 221 ELSKVRQSACIIVEGDVK---GEGEIGNLVIPGGKYAVGHFELGTEDFEKAWNTMC-KWF 276

Query: 119 QDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQP 154
            +S Y+      +E+Y N+     +    +++ + ++P
Sbjct: 277 TESGYQQGDGCTYELYHNSHRTHPENKHIVDICIPIKP 314


>UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter
           litoralis Och 149 RepID=A9HPW1_9RHOB
          Length = 273

 Score =  146 bits (368), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59
           + +I+    + +A     G + +     ++++   + + N  P+      VYYDNP+ TP
Sbjct: 122 DVDIQTTSDKRLAALSHRGDYAEG-SVAYQKVATIISTGNHWPQTRGMAGVYYDNPEVTP 180

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E LR    V   G        +G+   ++TGG+YAV   +      A+ +   +   L 
Sbjct: 181 TEDLRSHAGVLWEGGAI----PDGLEEVQLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLS 236

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S   +   P FE YLN+       D+  ++Y+ ++
Sbjct: 237 SSQESLRDAPSFEHYLNDPTNTAPADLLTDIYMPLE 272


>UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria
           RepID=A9KFE4_COXBN
          Length = 284

 Score =  142 bits (359), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 8/150 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK--NIVP--KEWVAVYYDNPD 56
           MN  IK  + R +A     G   + V +   +L+ W  S+  N+ P   E     YD+P 
Sbjct: 128 MNIVIKNMQARRLAVVEHHGH-PEKVGESINKLINWAKSQAMNLKPKAGEAFGFAYDDPK 186

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  E  + D  +TVP    L  N   VI   +  G+YAVA+     D+     Y  +  
Sbjct: 187 TTEPEAFQFDLGITVPEQLKLEGN---VIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI 146
            L +S  E+   PC   Y N   E    ++
Sbjct: 244 WLPNSGEELGDLPCIFCYYNFDHEVAETEL 273


>UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative
           symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK
          Length = 319

 Score =  142 bits (358), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPK-EWVAVYYDNPDET 58
           M   +       VA    VGP+  +V + +    + W  ++ ++P         D+P  T
Sbjct: 163 MQVTLTTLPAVRVAYMRHVGPYGVSVNQFWTGTFLPWCFAQGLLPGASSFGRGLDDPHIT 222

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             E  R D +V VP  F     +    +  + GG+YA+A            W +     L
Sbjct: 223 APEHCRYDAMVQVPDDFVARSPA---SMATLPGGRYAIAPFEGTVPQLTVAWTELLRDWL 279

Query: 119 QDSAYEMLPKPCFEVYLNNG---AEDGYWDIEMYVAVQP 154
             S  ++  +P FE    +    A  G    E+ + VQP
Sbjct: 280 PASGMKLDGRPLFEHMPPDARYDAATGVMQCELCIPVQP 318


>UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter
           sp. BAL39 RepID=A6EIJ9_9SPHI
          Length = 309

 Score =  139 bits (350), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETP 59
            EIK   +  +A    +G  +Q     F++LM W     ++       + +Y+D+   T 
Sbjct: 157 VEIKTLPQLELAYISHIG--DQGQAHTFQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITA 214

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           +E++R    + +    +       V    +  G+  VA   +  D+F K W + F   L 
Sbjct: 215 SEQVRMSACIVLKEPVS---TDGLVGTMTMPSGKCVVARMELAMDEFGKAWTELF-VWLN 270

Query: 120 DSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152
            + Y+   + CFE+Y N+       ++ +++ + +
Sbjct: 271 RNGYKTTERNCFEIYGNDPSTHPQHHFIVDLCIPI 305



 Score = 38.7 bits (89), Expect = 0.055,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 23  EQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGY 74
                K + +L +W++       E     +Y ++P   P      D  + + G+
Sbjct: 255 MDEFGKAWTELFVWLNRNGYKTTERNCFEIYGNDPSTHPQHHFIVDLCIPIDGH 308


>UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC
           family n=1 Tax=Chromobacterium violaceum
           RepID=Q7NYH2_CHRVO
          Length = 284

 Score =  138 bits (349), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 4/145 (2%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPA 60
            EI + +   V   H  GP+ + + K F+ L      +  V  P     +Y D+  +TPA
Sbjct: 132 VEIVERDAVKVLMRHHRGPYME-IGKAFDALRAVQGPQQGVGAPSRSFGLYLDDQAQTPA 190

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
              R     TVP  F   +  +G     I  G+YA  +      +  + W   +   L  
Sbjct: 191 ADCRSIACATVPA-FMEGKAMDGFEWGSIPAGRYAAVLHTGPYSELGECWDWLYRHWLPA 249

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD 145
           S       PC E YLN   +    +
Sbjct: 250 SGEMPGDTPCVEEYLNAPYDTPPAE 274


>UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus
           degradans 2-40 RepID=Q21DM1_SACD2
          Length = 287

 Score =  138 bits (347), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 8/154 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
            +I++  K  + G    G +   +   FE++ +   SK  + +      +YYD+P     
Sbjct: 136 VDIEKFNKVELGGLAHQGDYLD-IGAVFEKVFVSAGSKQFLNEHSRSFGIYYDDPTSKDK 194

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
             LR    VT+           G+    +  G +AV        +  + +  F+   L  
Sbjct: 195 SALRSHACVTLNPQQV---KEAGLDYLTLEAGNHAVLTFTGPYSELEQAYEWFYGEWLPQ 251

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           S Y++  +P FE YLN+       ++  ++Y+ +
Sbjct: 252 SGYQLADRPPFEEYLNDPKTVPPSELLTKIYLPL 285


>UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2
           Tax=Rhodobacterales RepID=A3VBK3_9RHOB
          Length = 278

 Score =  135 bits (339), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 6/153 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           + +I+ +  R +      GP+ Q + + FE+    V ++ + P     + +Y+D+P+   
Sbjct: 127 DVKIEDQPARRLGVIDHRGPYIQ-IGEAFEKAGSTVMARGLGPHLGAMLGIYFDDPENGA 185

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           AE LR      +     +      V L    GG++A+          A+ +   F   L 
Sbjct: 186 AEDLRSAAGFEMDEAAEITPPLREVRLE---GGKHAILTHTGPYTGLAQAYKYLFGEWLA 242

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            +       P FE+Y+N        D+   + V
Sbjct: 243 TAGEMPREAPPFELYVNTPMNTAPDDLVTLIGV 275


>UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea
           phototrophica DFL-43 RepID=A9D6E7_9RHIZ
          Length = 283

 Score =  134 bits (337), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 8/155 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--YYDNPDETP 59
           +  I++     + GF   GP+ + +   FE+    V   N+  +       Y+ +PD T 
Sbjct: 132 DVRIEEMGPAKLVGFEHTGPYTE-IGSAFEKFYAEVGPANLASQAMAIAAAYFSDPDITA 190

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+ R    + V     +   + G    +I  G+YAV   +    +  K +  F+ + L 
Sbjct: 191 PEECRSLAGMIVSPGLDV---AGGFDRFDILAGRYAVLQHKGAYAELPKAYQWFYGAWLA 247

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           DS       P  E YLN+       ++  E+ + +
Sbjct: 248 DSGESAAAAPAVEKYLNSPMNTAPAELVTEICMPL 282


>UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp.
           MWYL1 RepID=A6W3J7_MARMS
          Length = 286

 Score =  133 bits (334), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           M  +I   +   +A     G   + + +       W  S  + P        + Y++P  
Sbjct: 132 MTVDIVHFDTTKIALLKHRGSPSR-IMESVAIFREWRKSSGLSPITKSRTFNIIYEDPAV 190

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
             AE  RCD    V     + +N  GVI + + GG+YAV       D  ++  Y  +   
Sbjct: 191 VVAEDFRCDLAAEVMKE--VDDNEYGVINSTLAGGRYAVVRHFGPYDSISRCLYFLYGEW 248

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L DS  E+   PCF  Y N+  E    ++  ++Y+ ++
Sbjct: 249 LPDSGEELGDAPCFFQYHNHFPEVAEHELITDVYLPLK 286


>UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria
           RepID=B5XU59_KLEP3
          Length = 289

 Score =  131 bits (329), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           M+  I       +A     G  +        + + W  +  + P    +   + +D+P  
Sbjct: 135 MDVNIISFPTTRIAVLQHRGSPDLVNTTA-ARFIAWRKTSGLSPVATSDTWGIAWDDPQT 193

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E  R D   TV G   + EN+ GVI  EI GG+ AV       D  A   +  +   
Sbjct: 194 TPQEAFRFDICGTVAGP--VGENAFGVINGEIPGGRCAVVRHHGSLDTLANSVWFLYRDW 251

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           L  S   +   P +  YLN   E    ++  ++Y+ +
Sbjct: 252 LPASGETLRDFPVYFRYLNFVHEVAEHELQTDIYLPL 288


>UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134
           RepID=A1ZNF5_9SPHI
          Length = 469

 Score =  128 bits (322), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 1   MNYEIK--QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNP 55
           MN +I   + ++  +AG   +G +++     F++LM W   K ++     + + +Y+DNP
Sbjct: 145 MNAQIVITELQEIKLAGVMHIGEFDKA-GNMFQRLMEWGAKKRVLATSDFKAITIYHDNP 203

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T   KLR  T +T+            +    +  G YAV    +  D+    W     
Sbjct: 204 NVTQTSKLRFSTCITISEDI---NADGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMC- 259

Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
             + ++ YE      FE+Y N+     D  + +++ + ++
Sbjct: 260 IWVIENGYEFRDGDYFEMYHNDHKTHPDQKFILDICIPLE 299


>UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales
           RepID=A8UPH5_9FLAO
          Length = 287

 Score =  128 bits (321), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDET 58
             +I   E +    + + G ++       +E+L   V ++ +  K    + + YD+P  T
Sbjct: 134 KPKIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQKLFTKGIKHIGLPYDDPKIT 193

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A+K+R D  + +         +  V + E+ GG++AV + +     FA  +   FN+ L
Sbjct: 194 EADKIRYDACLIIHKDAK---PNGDVGVKELKGGKFAVFLYQGSYKHFADVYDHMFNAWL 250

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            +S +E+   P  E Y+++        +  E Y+ ++
Sbjct: 251 INSGHELRDAPSREKYISDARRVSEEKLKTEFYIPIK 287


>UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria
           RepID=Q31GA4_THICR
          Length = 288

 Score =  127 bits (320), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           MN ++ + +   +A     GP  + ++        W  +    P    +   + YD+PD 
Sbjct: 134 MNIDLVEFDHTLIAVLEHRGP-AEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDPDT 192

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
               K R D    V    T+P+N++G+I   I  G+ AV       +         + + 
Sbjct: 193 VEPAKFRFDLCAEVKE--TIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW 250

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L +S  E+   PCF  Y N   +    D+  ++Y+ +Q
Sbjct: 251 LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPLQ 288


>UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas
           salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4
          Length = 302

 Score =  126 bits (318), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 3   YEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMM-WVDSKNIVPKEWVAVYYDNPDETPA 60
             +KQ   R VA    +GP+  +T ++    L+  +   + + P   +++Y+D PD T  
Sbjct: 151 ASVKQMPARRVAYMRRMGPYGKETCEQAHRDLLALFASDEAMTPAGTLSLYWDIPDITDE 210

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
            + R D  + +            +    I  G YAV      GD     W   F   L  
Sbjct: 211 TRCRTDICIELGPEI---HAGRQLTTQTIAAGPYAVCQFIARGDQLVTTWETAFG-WLVS 266

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAV 152
                  +PC+E Y      D    + ++ + +
Sbjct: 267 KGLSCDDRPCYEQYHAGTDPDRDHYVFDICIPL 299


>UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus
           RepID=B9J2X1_BACCQ
          Length = 159

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 7/158 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M   IK      VA     G + +     + +L+ W     + P E  ++ +  DNP+  
Sbjct: 1   MKVIIKNLPSLEVAFIRRTGSYFEPQDH-WGKLLNWSIENKLYPPEQSFIGISLDNPELV 59

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            +   R D  VT+P  F   ++ + V    + GG YA+          ++ +   +   L
Sbjct: 60  ASHMCRHDACVTIPKNFEKEQHED-VQFKSVDGGLYALYEFYDKPHKLSEVYRYMYAVWL 118

Query: 119 QDSAYEML-PKPCFEVYLNNGAED--GYWDIEMYVAVQ 153
            +S Y     +   E  +NN AED  G   ++++V+++
Sbjct: 119 PNSEYSADYDRDNLEFCMNNVAEDLEGKLKVDLFVSIK 156


>UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC
          Length = 283

 Score =  124 bits (312), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           MN  I +     +A    +G  ++ ++    Q + W     + P    +   + + +PD+
Sbjct: 129 MNVNIVERPAEKIAYLSHLGSPDKVLETA-AQFIAWRKETGLSPVTKSKTYGIPFADPDQ 187

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TPA++ R D   ++     +PENS GV   EI  G+YA        D      Y  F + 
Sbjct: 188 TPADEFRFDIAGSIEK--AVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRNW 245

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L +   E    P F  Y N   E    D+  ++Y+ ++
Sbjct: 246 LPEQPEEAGDYPVFFHYHNFVHEVNECDLITDIYLLLK 283


>UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica
           SIR-1 RepID=A6GAG6_9DELT
          Length = 279

 Score =  124 bits (311), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
            E++ +   T  G    G + +   + + +LM        +P     V + YD+PD T A
Sbjct: 122 VELRDDPALTCIGLRHTGSYSE-CGQTWGELMAHAAKAGWMPHVLGSVGLAYDDPDITAA 180

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           E+LR D  + +             +L E+  G+YA+ + R   +   + +       L  
Sbjct: 181 ERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYVGLIGRALPF 240

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
              E+  +P  E YL++ A     ++  E+ V ++ +
Sbjct: 241 RGVELANEPVIERYLDDPATVPLHELRTEICVRIETR 277


>UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=Rhodobacter
           sphaeroides RepID=B9KLE9_RHOSK
          Length = 156

 Score =  122 bits (307), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 8/154 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPA 60
             I++   R +A     G +E+ +   F Q+   ++ ++++ +    + VY+DNP   P 
Sbjct: 6   VHIRETSPRRLAALRHTGAFEE-IGATFGQICQILEERSLLSQAGCMIGVYWDNPLLAPP 64

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
             L     + VP    +    E +    + GG++AV          A+ +  FF+  L +
Sbjct: 65  GALHSHAGIDVPEGMEIAPPLEELR---LAGGRHAVLQYTGPYSGLARAYRYFFSQWLPE 121

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +       P  E+Y N   E     +  E+ V +
Sbjct: 122 AREIQAEGPLIEIYRNAAMETPSDQLVTEICVPL 155


>UniRef50_A6LWY8 Transcription activator, effector binding n=5 Tax=Clostridium
           RepID=A6LWY8_CLOB8
          Length = 151

 Score =  121 bits (305), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 8/155 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M+  I+   +  +A    VGP+     +  EQL  W    ++  +    + +  DNP+ T
Sbjct: 1   MDINIEMIPEYKIAYIRKVGPYGLENVQVMEQLKSWAKENSLFNERSIIIGITQDNPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
                R D  + V   F     +  +  T   GG+Y V       D   K W + F   L
Sbjct: 61  EPADCRYDACLVVSDEFDFESKNINIGKTI--GGKYCVFKINHTVDAIQKAWIEIFLE-L 117

Query: 119 QDSAYEMLPKP-CFEVYLNNGAEDGYWDIEMYVAV 152
               Y++  K    E Y      + Y   E+ V +
Sbjct: 118 SKRNYKIDDKSKIIERYTMQMISNHYC--EICVPI 150


>UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes
           RepID=C7M7E1_CAPOD
          Length = 289

 Score =  121 bits (304), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 9/155 (5%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
           +I + E +++    L G +      K +EQL   V S+ +  K  E + V YD+P  T A
Sbjct: 133 KIVELEPKSLIYVALTGEYGTLNYNKAYEQLWGVVKSQKLFTKGIESICVSYDDPKITEA 192

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
              R +  + +       + S  V    + GG+YAV   +      +  +       + D
Sbjct: 193 SLQRSEVSLAI---HKPAKPSGEVSCKTLAGGKYAVFFYQGSYTQLSSVYDAAMR-WVVD 248

Query: 121 SAYEMLPKPCFEVYLNNGA--EDGYWDIEMYVAVQ 153
           S YE+  +P FE YLN+     +G    E+Y+ VQ
Sbjct: 249 SEYEVRDEPMFEKYLNDCRRTPEGKLKTEIYIPVQ 283


>UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales
           RepID=Q64RP2_BACFR
          Length = 280

 Score =  121 bits (303), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56
           +  EI  E +  +    ++G +  E+   + + +L  ++    ++     W+ + +D+P 
Sbjct: 128 LKPEILTEPELKLVYIRIIGRYGEEEPYIEAWRKLRDFLQINGLLTPSTRWIGISFDDPT 187

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  E+ R     TV    +         +  I  G+YAV   R       + + + ++ 
Sbjct: 188 VTKTEQCRFYACATVEHDVS---PQGAFGMKTIPQGRYAVYTLRGSYSGLQEMYDRIYSH 244

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153
            L  +         FE YLN   +    D    +Y+ ++
Sbjct: 245 PLPTA---FRDATSFEEYLNCEPDTEEKDYVTRIYIPIE 280


>UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria
           RepID=Q88KW6_PSEPK
          Length = 289

 Score =  121 bits (303), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 53/158 (33%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           M   I    +  VA     GP    V +   +   W       P        + YDNPD 
Sbjct: 135 MQIRIVNFAETHVAALEHQGPPG-LVSESVARFRQWRMHSGQSPVASSRTFGIPYDNPDT 193

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TPA   R      +     +  N  GV    I  G+ AV       D   +  Y  +   
Sbjct: 194 TPAHAFRFAVCGEI--DEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPLYRDW 251

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153
           L  S  E+   P F  YL+   E     W  ++YV ++
Sbjct: 252 LPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPLK 289


>UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales
           RepID=Q2KTK1_BORA1
          Length = 279

 Score =  120 bits (301), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 13/160 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-----PKEWVAVYYDNPD 56
           +  +      T+A     G + Q + + F++L +   ++ ++        W+ VYYD+P 
Sbjct: 126 SVNLVSYPGLTLAALPHQGDY-QRIGESFDRLALLAVNQGLIAPHAESGPWIGVYYDDPR 184

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
           +    +LR    V   G        + +    I   +  V        +    +   F+ 
Sbjct: 185 QVETGRLRSHACVASKG-----APGDPLQTLVIPAMRCGVVEYLGPYTEIDHAYDWMFSE 239

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
            L  S  E L  P FE Y N+        +   +Y+ ++ 
Sbjct: 240 WLPASGEEPLDFPMFEEYANDPKTTPAAALLTRIYLPLRA 279


>UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU
          Length = 292

 Score =  119 bits (299), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 7/155 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK-EWVAVYYDNPDETP 59
           +   IK+            G + +++   +++LM W     I  +   + +++DNP  TP
Sbjct: 139 LEPTIKKIPAFRAVYLRHKG-YNKSIALSWQKLMAWGFEHQISSQARQIGIHHDNPSITP 197

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             + R    + V   F        + + E      AV   +    D        ++  L 
Sbjct: 198 LAECRYIAALEVEEGF---RAQGLLGVMEFPPTLCAVFEVQGRYGDVLGLIDYVYHEWLP 254

Query: 120 DSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152
            S YE    P F +Y  N      G + ++  + V
Sbjct: 255 QSGYEAKTIPAFALYQKNHFLDPLGNFQLDFCLPV 289


>UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms
           RepID=B8H068_CAUCN
          Length = 296

 Score =  119 bits (299), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 8/158 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
           +  I       VA     G     +     + + W  +  + P+      V++D+PD+TP
Sbjct: 142 DVRIVDFPDTPVAVMRHEGDPA-LLGDTIRRFIAWRRAAGLPPRVSATFNVFHDDPDDTP 200

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           AE+ R D          +  N +GV    I GG  AV       DD        +   L 
Sbjct: 201 AEQYRLDLCA---ATARVASNPDGVTSGVIPGGPCAVLRQIGSSDDLRAASRFLYGEWLP 257

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155
            S  E+   P F   ++   +    +   ++++ + P+
Sbjct: 258 RSGRELRDAPFFAQRVSFFPDVPEHEAVTDLFLPLSPR 295


>UniRef50_D1B3I6 Transcription activator effector binding protein n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B3I6_SULD5
          Length = 287

 Score =  118 bits (295), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDET 58
           ++ +I+      VA     G +++T+++ + +L  W          +  +A+++ NP   
Sbjct: 131 LHVKIQTMPSFDVAYVRHKG-YDRTIQQAWLKLQAWALGHGVDFSDQRMIALHHSNPRFV 189

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            + +      + +P       + + + +  I     AV   + V  D  K     ++   
Sbjct: 190 ESSQCHYVACLELPKGREFYRSGD-IGVMRIPQTFCAVFSLKGVYGDLKKYMDVIYHEWF 248

Query: 119 QDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQ 153
             SAYE +  P F +Y  N     D  +D++  V V+
Sbjct: 249 PQSAYEKIALPSFAIYRENHFINADERFDLDFCVPVR 285


>UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides
           RepID=C6IFE4_9BACE
          Length = 377

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
             EIK      +    +   ++     +  + +L+   +     P+  +++++  D+P  
Sbjct: 221 KPEIKVISPIKIFCIEVGEAYKNKLKYRLLWNKLLHHAEQYEADPRYDKFISLSMDDPSI 280

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP EK R    +T+              + +I GG+YAV           K +   +   
Sbjct: 281 TPTEKCRFYLGITLRDDTKARPVPG---IMQIPGGRYAVFRHTGSYSSLHKVYRSIYEEW 337

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
              S Y       FE+Y+N+ +     ++  E+Y+ V
Sbjct: 338 FPKSKYHPQSTFSFEMYMNHPSTTETSELLTEIYIPV 374


>UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina
           ATCC 23134 RepID=A1ZL96_9SPHI
          Length = 290

 Score =  117 bits (293), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 65/154 (42%), Gaps = 8/154 (5%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
           +I     + +    ++G +E + ++K +++LM +V ++ +     E   + +D+P+    
Sbjct: 138 KIIDLPAQQLLSTRILGKYETSVIQKAWQKLMTYVFAQQLFYPTMEMFGISHDHPEIAGD 197

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
              + +  VT+        +    ++  +  G+YA+   +         +       L +
Sbjct: 198 ILYQYEACVTLAKPVA---SEGEFVVKTLPAGKYAMFTYQGSYAQLDTVYNLVLKQWLFN 254

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           S+Y +   P F+ YLN        ++  ++++ +
Sbjct: 255 SSYSLREAPIFDQYLNTPDNTPEEELLTKIFLPI 288


>UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
           DSM 17393 RepID=B3CE13_9BACE
          Length = 283

 Score =  115 bits (289), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 11/158 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
             E+       +A   ++GP+ +  + + G+ +L  ++    +  K   W  + +D+P  
Sbjct: 133 EPEVLLISPMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKLQSKATRWFGISFDDPTI 192

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T  ++ R     +V         S  +    I  G+YAV   +       + +   ++  
Sbjct: 193 TKKKQCRFYACASVAQRIK---PSGAIGTLTIESGKYAVYTYKGSYSGLLRAYTYIYSR- 248

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
             +    +     FE Y+           ++Y+ +Q K
Sbjct: 249 --EKGR-LRNALSFEEYVTWSDNPAKQITKIYIPIQKK 283


>UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria
           RepID=Q12JT5_SHEDO
          Length = 289

 Score =  115 bits (289), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDET 58
           + ++ +   + VA     G  E+ ++   +Q + W  +  + P        V   +P+  
Sbjct: 136 DVKLIELPIQKVAQLEHSGAPEKLMETA-KQFIEWRKTTGLSPVAISRTYGVPNGDPNTM 194

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            AE  R     +V     +P+N  GV+   + GG YAV       D      Y FF   L
Sbjct: 195 AAEDFRFRFCGSVNE--AVPDNEYGVVTGTLAGGCYAVIRHEGSHDAMESSIYGFFREWL 252

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             S   M  +P F  YLN   +    D+  ++Y+ ++
Sbjct: 253 PQSGKAMRDEPLFFHYLNFIHQVDECDLLTDIYLPLE 289


>UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales
           RepID=A8EWB5_ARCB4
          Length = 292

 Score =  112 bits (281), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
              I +  +         G +++++KK +++L  W+ + +I   + +A+++DNP  TP E
Sbjct: 139 EPSIVKMPEIKGYYIRHKG-YDKSIKKTWQKLQTWIYTNDIKEYKQMALHHDNPIITPLE 197

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
             +    + V            +    I  G YA         D  K     +++ L +S
Sbjct: 198 DCQY-IAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGDVIKLIQWVYHTWLIES 256

Query: 122 AYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQ 153
            YE  P P + +Y  N   ++DG + ++ Y+ ++
Sbjct: 257 GYETTPNPSYTIYHKNHFLSDDGEFILDYYLPIR 290


>UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseobacter sp.
           SK209-2-6 RepID=A4ERY7_9RHOB
          Length = 232

 Score =  111 bits (277), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           +  I++ E   VA     GP    +    ++ ++W  +K + P   E   V++ +P  T 
Sbjct: 80  DVTIRETETIPVAIIEHRGPPA-GIGATIQRFILWRKAKGLSPLNSETFNVFHSDPQSTD 138

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             + R D    V     + E+ +GV+   I GG+ AV       DD        +   L 
Sbjct: 139 PREYRLDIC--VATDRGIDEDEQGVVSGVIPGGRCAVLRVVGNSDDLETASLYLYRDWLP 196

Query: 120 DSAYEMLPKPCF 131
           +S  E    P +
Sbjct: 197 ESGEETRDFPLY 208


>UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla
           marina ATCC 23134 RepID=A1ZSG3_9SPHI
          Length = 292

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           + Y I+      +      G +  Q +   ++ L+ +   + ++ ++   +    D+ + 
Sbjct: 132 LTYSIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLLKEDTHYLGELMDDDEI 191

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
              E  R +  +T+P      E +       I  GQY     +   +     + Q F   
Sbjct: 192 VKDENCRYNAAITLPQEAVF-EPTGFFNTKTIESGQYVCVTHQGDRNKLDTVYEQIFLHW 250

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +  + +E++ KP  E YLN+  +    D+  E+YV V
Sbjct: 251 IVKNEFEIVDKPFLEFYLNDETDTATKDLLTEIYVPV 287


>UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides
           cellulosilyticus DSM 14838 RepID=UPI00019685E3
          Length = 329

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 5   IKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE-TP 59
           I+  E   V    +  P++      K +++L+ +V    I   E        D P   T 
Sbjct: 175 IRVIEPVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGIPDGETEYFTFSRDVPTIITS 234

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+ R    V    +    E S  + +  I GG+YAV             +   +   L 
Sbjct: 235 PEQQRIFVCVNNSDHL---EPSGIIGVQTIEGGEYAVFTMYGAYRQLPDVYTYIYRYWLF 291

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
           +S Y++     FE YLN+  E     +  E+Y+ V  K
Sbjct: 292 NSDYQIRDSMVFEKYLNSPDEVEEDKLMTEIYIPVSKK 329


>UniRef50_O34775 SPBc2 prophage-derived putative transcriptional regulator yosT n=2
           Tax=root RepID=YOST_BACSU
          Length = 149

 Score =  109 bits (272), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDET 58
           M   I++  +  +A F  VG +  +  K+  E    W     +      + +  D+P  T
Sbjct: 1   MKITIEELPELRIAYFRNVGEYGGKQNKELMESFKKWAQLNGVFHNSVILGIPQDDPSIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E+ R D  V +   F + + +    + ++ GG+YAV +     +  ++ W   F+ + 
Sbjct: 61  PKEECRYDVGVVLNEDFNVLQPA---QVGKLPGGKYAVFLLDHTKEAVSEFWGNIFSEIE 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           ++S   M  +P  E Y +   ++     E+ V +Q
Sbjct: 118 KNS-LTMRGEPIIERYTSQMIDN--HLCEVLVPIQ 149


>UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22
           Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY
          Length = 294

 Score =  108 bits (269), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 6/153 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
             +I +  +R  A    VG + +++K  +  L  W +S+    +    +++ NP     +
Sbjct: 143 EPKITEVPERMAAYVRHVG-YNRSIKNAWLILKAWANSEGRSFEVQFGLHHSNPAWVELD 201

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           K R    + +            V    I GG +AV     V  +            L  S
Sbjct: 202 KCRYVACIAIDKPLKYRGV---VNQMVIPGGLHAVFRLHGVYGELLPQISMVLEKWLPAS 258

Query: 122 AYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152
            +++   P +  Y +N    E   ++++ Y+ +
Sbjct: 259 GFKLRSTPAYVHYHSNHFVNESEAFELDFYLPI 291


>UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium
           hominis ATCC 15826 RepID=C8NA30_9GAMM
          Length = 280

 Score =  108 bits (269), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 10/155 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETP 59
            +I+      V      G +  ++   F QL   +  +  +P     +  +YYD+P   P
Sbjct: 130 VKIRDIAALPVVALPHHGDYM-SIGASFSQLETLLTLRGHLPAPQARYFGIYYDDPAGCP 188

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             +                + +  +    +  G+YAV   R    +  + +   +   L 
Sbjct: 189 TAQ----LRAAAAVALGGADATPPLQTLTLAAGRYAVLEHRGAYAELHRAYDWLYRDWLL 244

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +S Y++   PC E YLN+  +    ++   +Y+ +
Sbjct: 245 NSPYQLADAPCLEEYLNDWQQVPPQELRTNIYLPL 279


>UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum
           rubrum ATCC 11170 RepID=Q2RP02_RHORT
          Length = 160

 Score =  107 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEK 62
           ++       A    +GP+ +   + F ++  W  S+ ++  E   + + YD+P  TPAE 
Sbjct: 6   VRPLPAMIFASLRHIGPYGEA-GETFRKITDWAVSEGVMTPETQILGLSYDDPKTTPAEI 64

Query: 63  LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122
           LR D  VT+     LP    G+ L  +    + +   +   +   + + + + +L +   
Sbjct: 65  LRYDACVTLKTPVALPP---GMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPT 121

Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
              +     E+Y+N+ A     D+  E+ VAV
Sbjct: 122 LVPIATGAIEIYVNDPATTAPADLITELGVAV 153


>UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2
           Tax=Proteobacteria RepID=A6FZ48_9DELT
          Length = 300

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAE 61
           ++  +   VA     GP    +    ++ + W       P+     + V YD+P+    E
Sbjct: 146 LRTLDPIPVAALEHRGPPATLMASV-QRFIAWRRGSQAAPEPSTRTLGVLYDDPESVAPE 204

Query: 62  KLRCDTVVTVPG--YFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             R D    +             GV+   I GG+YAVA  R   D   +     +   L 
Sbjct: 205 DFRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRGSTDAIGETVMGLYRDWLP 264

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAV 152
            S   +   P    Y+         +   ++Y+ +
Sbjct: 265 GSGERVRDAPLVFHYIERVPRVAEHEQVTDVYLPL 299


>UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides
           RepID=Q5LFV9_BACFN
          Length = 382

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 2   NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           +  IK+ ++  VA          +Q     + Q++ +    N+  K +  V++  D+ D 
Sbjct: 222 DCSIKRIKEFKVAYLKFERTHRNKQAYSTLWGQIIEFAKKYNLTDKGFKYVSISLDSLDI 281

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T  +K R    +TVP    +P+   G     I  G Y+V   +    +  K +   +   
Sbjct: 282 TEIDKCRFLIGITVPYSMEVPK---GFGTLNIQAGLYSVFNIKGGYHELNKIYRNVYLDW 338

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPKH 156
           L +S Y +  +  FE+Y N   +    ++  E+Y+ ++ K 
Sbjct: 339 LPNSKYRLREQMTFEIYANTPNKTSTDELVTEIYLPIEAKQ 379


>UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides
           RepID=D0TT37_9BACE
          Length = 383

 Score =  104 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 9/157 (5%)

Query: 2   NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
              IK+     +A            +    ++QL+ + ++  +  K    V++  D P  
Sbjct: 225 ELSIKKVHNMRIAYLKLERTNNISHSFSLLWKQLLQFSENYELPSKGCQYVSLTLDYPLI 284

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E  R    VT+P  F  P+   G  + EI+ G+YA+   + +  +  + +   +   
Sbjct: 285 TPEEHSRFMVGVTLPQSFETPK---GFGMYEISSGEYAIFRFKGLYHELNRVYRHIYLDW 341

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           L  S Y +     FE Y+N   +    ++   +Y+ V
Sbjct: 342 LPTSDYTLREPFTFETYINTPEKTPASELITAIYIPV 378


>UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium
           RepID=A5HZP6_CLOBH
          Length = 278

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58
              I+      V     +G +           E+   ++    ++ ++     YD+P  T
Sbjct: 134 KIIIENLADFKVIYERYIGNYIDIGDNWYSFMERYKTYIKPDTLLIEK----SYDDPSIT 189

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             EK   D  +TV     L        +T I GG++AV        D    +   FN  L
Sbjct: 190 ELEKCIYDLCITVGEDVELE------NVTTIKGGKFAVYRFNGYIHDIFVTFQGVFNIWL 243

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
             S Y+M  +    +Y N   ++ +  +++ +A++
Sbjct: 244 PRSGYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK 278


>UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae
           RepID=YGIV_ECO57
          Length = 160

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           ++  I       VA         + +     + +MW     + P    +   V +D+P  
Sbjct: 6   LDVNIIDFPSIPVAMLPHRCR-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T  E  R D   +V     +P+N  GV   E+TGG+YAVA      DD +   +      
Sbjct: 65  TAPEAFRFDICGSVSEP--IPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRHW 122

Query: 118 LQDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAV 152
           L  S  +M   P    Y N   G  +   +  +YV +
Sbjct: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPL 159


>UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2
           Tax=Gammaproteobacteria RepID=A4BA20_9GAMM
          Length = 313

 Score =  102 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 7/155 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
           +  + +     +A     G   + +    +  + W     + P       + YD+P+E  
Sbjct: 158 DVTVIEMPAIPLAVMPHRGNPAR-LSHTLQAFIAWRKRNGLSPSHSRTFNLVYDDPNEVT 216

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +  R D    +     LP + EG+    I  G+YA A  +   D   +  +  +   L 
Sbjct: 217 DDDYRFDLACEI--QGELPADFEGMESRTIPAGRYARARLQGSDDALERLVHSLYAEWLP 274

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
            S Y++   P     +    +    ++  ++Y+ +
Sbjct: 275 SSGYDLADFPLLFERVRFFPDVSEHEMITDVYLPL 309


>UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=Methanospirillum
           hungatei JF-1 RepID=Q2FQG5_METHJ
          Length = 279

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD--SKNI----VPKEWVAVYYDNP 55
              +K  E   V      G +E+ + K    L  +     + +    +   ++ +Y+D  
Sbjct: 127 EPTLKDIESLRVLSIRDKGTYEEVIPKLIGTLCQYFSSPQRGLEQVSITGPFMTIYHD-G 185

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           +   ++    D  V VP    LP+   G+ +  + GG++A A+ +    D  + W + + 
Sbjct: 186 EYRESD---ADVEVAVPVTGRLPDQIPGITIRTMPGGRFASAIHKGPYQDAHESWGKLY- 241

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAE 140
                  YE    PC + YLN+  +
Sbjct: 242 EWTAKQGYEPK-APCRDNYLNDPDD 265


>UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium
           RepID=C6PVM8_9CLOT
          Length = 277

 Score = 99.2 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGF----EQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           I++ +   V     +G + + + K +    E+   +     ++ + +    YD+P  T  
Sbjct: 136 IQELDDFVVIYERYIGNYIE-LGKNWYDFTEKYKDYFKEDTLLIERF----YDDPSITSL 190

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++   D  +TV    +L        +T I GG++A+     +  D    +   FN  L D
Sbjct: 191 DQCLYDICMTVDKNCSLD------NVTTIQGGKFALCRFDGLIQDIFAAFQGVFNIWLPD 244

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           S YEM  +   ++Y     E  +  +++ + ++
Sbjct: 245 SGYEMDERYGLDIYRAIDWESMHVVMDLCIPIK 277


>UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae
           subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK
          Length = 288

 Score = 98.8 bits (245), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 7/154 (4%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62
             + ++  + V      GP   T+     +L   +    +    W+ +  ++        
Sbjct: 135 VRLIEQPAQQVLALRHRGP-AATIPHTHRRLRWLIGE--LPGTVWLGMCREDAG--DPGS 189

Query: 63  LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122
             C                  +   +I  G YA              +   +   L  S 
Sbjct: 190 GLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAAFNALYARWLPASG 249

Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
           YE   +P  E YLN+       ++  ++ V V+P
Sbjct: 250 YEPDDRPALEHYLNSPRNAAPAELRTDLLVPVRP 283



 Score = 38.0 bits (87), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM-WVDSKNIVPKEWVAV--YYDNPDET 58
           + E         A   L GP+ + +   F  L   W+ +    P +  A+  Y ++P   
Sbjct: 210 DIERIDIPAGLYACHRLAGPYTR-INAAFNALYARWLPASGYEPDDRPALEHYLNSPRNA 268

Query: 59  PAEKLRCDTVVTVPGYFTLP 78
              +LR D +V V      P
Sbjct: 269 APAELRTDLLVPVRPTPATP 288


>UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP
          Length = 280

 Score = 98.4 bits (244), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 59/158 (37%), Gaps = 12/158 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56
           +  E+ + +   +    + G + +    ++ +  L+ ++     + +   ++ + +D+P+
Sbjct: 130 LEVEVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQALSEDTRFIGLSFDDPN 189

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  ++ R     +V            + L +   G+YAV   +       + +      
Sbjct: 190 VTHPDQCRFYACASVGKEIIPSGMFGTIRLQK---GKYAVYTLKGSYAGLQELYNTINID 246

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153
                 Y       FE Y++   ED    + ++Y+ ++
Sbjct: 247 F----NYTKRHGMAFEEYVSYSEEDDDTQVTKIYIPIK 280


>UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM
           12442 RepID=C3BTE5_9BACI
          Length = 303

 Score = 98.4 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPA 60
             +K      VA     G +E    + F +L+ W   K I   +   + V +D P  TP 
Sbjct: 149 VTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRNDCFLLGVGHDAPTITPK 208

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-DFAKPWYQFFNSLLQ 119
           E LR D  + V   F    +   +   ++ GGQ+A          +    + + +  +  
Sbjct: 209 ELLRFDCCIEVDQPF---HSEGKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQH 265

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155
           +   E +  P  E+Y        Y     ++YV ++ K
Sbjct: 266 NKNIEFVGLPVVEIYRTTTINPSYKLNQTDIYVPIRVK 303


>UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium
           butyricum RepID=C4IM74_CLOBU
          Length = 277

 Score = 98.1 bits (243), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--YYDNPDETP 59
              I+    + V     +G + + ++K +E+       K  + +  V +   +D+P  T 
Sbjct: 133 KISIEIINDQFVIYERRIGNYNELIEK-WEEFTD--KYKKYIDENTVFLERTFDDPSITS 189

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A+K   D  +TV     +           I GG++AV   +   +     +   F     
Sbjct: 190 ADKCIYDICMTVDKNCDVENTC------VIPGGKFAVYHYKGFPEQIYTAYQNMFQVWFP 243

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
                +  +  F++Y     +  Y ++++ + ++
Sbjct: 244 VVKKRIDNRYGFDIYNKIDCDSMYMELDICIPIK 277


>UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides
           cellulosilyticus DSM 14838 RepID=UPI00019685A1
          Length = 377

 Score = 97.7 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 9/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSK--NIVPKEWVAVYYDNPDE 57
             +IK+          +   +         ++QL+ +      N     +V++  DNP  
Sbjct: 222 EAKIKRINTLKAVCIEVGDTFRDKYAYTTIWKQLLHYKAVHLQNGPGNRFVSISQDNPWV 281

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E+ R    V V G      +   ++L EI GG YAV   +    D  + +   +N  
Sbjct: 282 TPMEQRRFYIGVLVEG---RANSEGKLLLREIPGGMYAVFRYKGSYSDLPEFYKTIYNQW 338

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
              S Y       FEVYLN   E    ++  E+Y+ +
Sbjct: 339 FPYSMYHQKRPLTFEVYLNAPDETPVEELLTEIYIPI 375


>UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter
           turnerae T7901 RepID=C5BIU8_TERTT
          Length = 313

 Score = 97.3 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLR 64
           I +   R +A     G +++++   +++L +W     +  +   A+ + NP   P +  R
Sbjct: 166 ICEVPSRLMAYIRHHG-YDRSIAHTWQKLDLWRFENGLHTQGQFALLHSNPCLVPLKDCR 224

Query: 65  CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYE 124
               V +      P     + +  + GG +A      V  +F     +     +  S   
Sbjct: 225 YVACVEI---HKTPLQRSVINVLRLPGGIHARFHLAGVYGEFIPYLSRILQEWVPHSGLR 281

Query: 125 MLPKPCFEVYLNNGAEDGYW--DIEMYVAV 152
           +   P +  Y  N   D     D+E+Y+ +
Sbjct: 282 VRTTPIWVAYNKNQFTDSQHEFDLELYIPI 311


>UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE
          Length = 297

 Score = 97.3 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 12/160 (7%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQ-----LMMWVDSKNIVP--KEWVAVYYDNP 55
           Y I + E   V     +G ++      FE      L  +    +++P  +++  + YD+ 
Sbjct: 138 YRIVESETIPVLFLSYIGNYDTCSTVAFETYTWDCLYEYAKENSLLPDKEDYWGIAYDDT 197

Query: 56  DETPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
           D T  EK R    + +  G  T P  +  +   ++  G YAV V +         +    
Sbjct: 198 DITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAVYVHQGDYALLDAFYETIL 257

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
              L    Y +   P  E YLN+  +    ++  E+++ +
Sbjct: 258 KQ-LPQF-YSLGETPILEHYLNSPTDTDVKELLTEVWIPI 295


>UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SDP4_LEPBA
          Length = 289

 Score = 96.5 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 10/156 (6%)

Query: 6   KQEEKRTVAGFHLVGPWE---QTVKKGFE--QLMMWVDSKNIVP--KEWVAVYYDNPDET 58
           K     ++     +G ++     +    E  QL       +++    +W+ +  D+PD T
Sbjct: 136 KTISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLLEFHHKWIGISQDDPDVT 195

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             + +R D   T+   F  P   +G     I GG Y         ++    +    N   
Sbjct: 196 CKDNIRFDLGFTISEKF--PSPPDGFGKQTIPGGNYLQIRYTGDYENLPMIYDWILNQYC 253

Query: 119 QDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAVQ 153
             S  ++   P +E YLN           ++Y+ ++
Sbjct: 254 IVSKLKLKNNPPWECYLNPFEPIPDKRITDIYIPLE 289


>UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales RepID=C7XCD5_9PORP
          Length = 289

 Score = 96.1 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 18/161 (11%)

Query: 1   MN--YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW---VAVYYDNP 55
           MN  +E+K+     +   H  G     +     +LM W  +K ++       ++VY    
Sbjct: 1   MNYTFELKELHATHIVYLHHQGD-MSLIPSSIRKLMQWAGAKGLINGPANKLISVYQH-- 57

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                ++L  D  +TVP      E    +    ++GG YA+    +  D+    W   + 
Sbjct: 58  ---EGKELSVDIGLTVPQEV---EGENEISKGLLSGGLYAIGHFEIGTDEIPAAWSLMY- 110

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD---IEMYVAVQ 153
           +L      +      FE+Y +   +    D   I++ + VQ
Sbjct: 111 TLTSKHQCKPCAGKSFEIYQSIPLDQHPQDKCMIDLCIPVQ 151


>UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Magnetospirillum
           magnetotacticum MS-1 RepID=UPI0000383DF5
          Length = 139

 Score = 95.7 bits (237), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 26  VKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG 83
           + +   + + W  + ++ P +     + Y  PD+ P  + R D  V   G         G
Sbjct: 13  IAETVGRFIAWRKANHLPPSQHATFNILYGGPDQVPPAEFRQDLCVATGGKAV--AFGSG 70

Query: 84  VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY 143
           V    I GG+ AV       D         +   L  S  E+     F   L    E   
Sbjct: 71  VAAGIIAGGRCAVLRHVGPDDGLEAALTYLYGDWLSQSGEELRDSLPF---LQRFPELAG 127

Query: 144 WD--IEMYVAVQ 153
            D  +++++ ++
Sbjct: 128 HDSPVDIFLPLR 139


>UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax=Hyphomicrobium
           denitrificans ATCC 51888 RepID=C6QIW6_9RHIZ
          Length = 174

 Score = 93.8 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 6/148 (4%)

Query: 10  KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDETPAEKLRCDT 67
              +      G +   + K +E+L   +D   +         + +DNP +  ++  R D 
Sbjct: 13  PTRLIYVSATGRYSDVIPKVWERLFRQLDDSGLYESIGRGYGMAHDNPLDVGSKNCRYDA 72

Query: 68  VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML- 126
            V +        +     +T +  G YA        D         +             
Sbjct: 73  CVEIRSGIE-ERSLPEFGITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQ 131

Query: 127 PKPCFEVYLNNGAEDGYWDI--EMYVAV 152
            +P   +Y++N       D+  ++ V V
Sbjct: 132 NRPVVSIYMDNPNNYADQDLRSDICVPV 159


>UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3Y825_9GAMM
          Length = 289

 Score = 91.5 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           N E+ +    ++A     G   Q + +  +  + W  ++ + P       + Y +P    
Sbjct: 132 NVELIEFHTLSIAYLTHKGHPNQ-LHRSIQTFIDWRRARALPPHKSRTFNLLYHDPKRVE 190

Query: 60  AEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            E  R D             +    + + +I  G+YA    +   D   +  Y  FN  L
Sbjct: 191 PEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQLDQAIYYLFNLWL 250

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153
           + S  ++   P F   ++   +        ++Y+A++
Sbjct: 251 EQSGEKLRDFPLFIERVSFFPDVAANKAISDIYLALE 287


>UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n=1 Tax=Bacillus sp.
           NRRL B-14911 RepID=Q2BBL2_9BACI
          Length = 311

 Score = 91.1 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 14/164 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59
                +           VGP+ + +   +E L  W  S+ ++  +     V  +NP  TP
Sbjct: 152 KVRTIELPVCATVNRQSVGPYTEGIPDAWEDLYHWTTSRELMKPDPFTFGVPRNNPYITP 211

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-----DFAKPWYQFF 114
            EK R D          +PE     +     GG++ V       D        + + + +
Sbjct: 212 PEKTRYD-CRIAIDQDKIPEGEPAFLFK---GGKHVVYEFDEPVDYSERGRLIECYSELY 267

Query: 115 NSLLQDSAYEMLPKPC--FEVYLNNGAEDGYWDIE-MYVAVQPK 155
           +  L  S Y  L  P    +V    G+      I  + +A++PK
Sbjct: 268 SFWLPRSGYRYLDNPVELVDVKPLKGSLSVECKIRAICLAIEPK 311


>UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI n=2
           Tax=Lactobacillus rhamnosus GG RepID=C7TEN0_LACRG
          Length = 151

 Score = 91.1 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 13/156 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDETPA 60
              I+  ++  VA F  +GP+     K       WV ++ +      + +  DNP   P 
Sbjct: 5   KVHIEYMKETNVAYFRRMGPYGSENGKLMHSFKQWVKAEGLFEGSTILGIALDNPQNVPD 64

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL--- 117
              R D  + +         +  +    +   +YA+   ++   +      +F+  L   
Sbjct: 65  ANCRYDVCLIINKEH---LKNNRIKQRPLPSIKYAI--FKIPHTEI--AINEFYKKLNQI 117

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           + +   ++L KP  E Y       G+   E+ + ++
Sbjct: 118 ICEKQLKVLNKPIIERYKQKLVSLGFC--EILIPIE 151


>UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria
           RepID=B0SZN8_CAUSK
          Length = 296

 Score = 90.0 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 5/154 (3%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPA 60
             +++     VA F   G   +T+    ++ + W  +  + P+      +++        
Sbjct: 145 VALREVAPTRVAIFEHRGD-PETLDATIQRFIAWRKAAGLSPRTNPTFNIWHSERRPPDP 203

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
                D  V V     +  +SE V   EI GG+ AV        +        +   L  
Sbjct: 204 ADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTHNLEPAALYLYRDWLPA 263

Query: 121 SAYEMLPKPCF-EVYLNNGAEDGYWDIEMYVAVQ 153
           S  EM   P + + +  +  E G    E+++ ++
Sbjct: 264 SGEEMRDFPIYCQRFFLDAPEQGTA-AELFLPLK 296


>UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas
           campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5
          Length = 307

 Score = 89.2 bits (220), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 7/155 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFE-QLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           +  ++   +RTV    +  P+E+   +    +L+ W     +   +W+   +D P    A
Sbjct: 147 SVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAGVEHHQWLGYLWDQPRLASA 206

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
              R D  V V            + +      + A  V R       + +    ++ L  
Sbjct: 207 ADCRYDVAVEVTHGRHC----GEIGVFRFPPMKVAEVVIRGGLALEMRAFGWVRDTWLPA 262

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMY--VAVQ 153
           S Y     P FE +L      G    E+   + ++
Sbjct: 263 SGYLPTDLPAFEAWLGLPYAHGAEHFELACQIPIR 297


>UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WAV0_BACSK
          Length = 119

 Score = 87.7 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 30  FEQLMMWVDSKNIVPKEWV-AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88
            E    W     +     +  +  DNP+ TP E+ R D  V +   F + + +    + E
Sbjct: 1   MENFKKWAKLNGVFNDSIILGIPRDNPEITPKEECRYDVCVVINKDFNVTKPA---HIGE 57

Query: 89  ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEM 148
            +GG+YAV +     +  ++ W   F+  ++ +   +  +P  E Y +   ++     E+
Sbjct: 58  FSGGKYAVFLLDHTKEAVSEFWGNIFSE-IERNNLSIREQPIIERYTSQMIDN--HLCEI 114

Query: 149 YVAVQ 153
            V +Q
Sbjct: 115 LVPIQ 119


>UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis
           excentricus CB 48 RepID=C5SFE7_9CAUL
          Length = 291

 Score = 87.7 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVY---YDNPDETP 59
            EI   +  T+      G + + +   +++L   V S  +  +    +Y   +D+P  T 
Sbjct: 137 IEIVAADPLTLTALRNTGAYPE-LNAVYQRLFDLVFS-QLSMEHLAGLYGYQHDDPRHTA 194

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E  R +  V V G   L E+   +    +  G YA        D         + +++ 
Sbjct: 195 PEACRAEVAVDVGGKAELTEDLYHI---VVPSGLYARLRHLGDYDAIQPAMDTLYLAVI- 250

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           D+ Y +  +P    +L++  E    D+  ++++ +
Sbjct: 251 DAGYALADQPLHLHFLDDPEEVATADLRCDLFLPL 285


>UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp.
           H160 RepID=B5WT45_9BURK
          Length = 323

 Score = 85.7 bits (211), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60
           + E+ +     V      GP   T+ + F  LM  +        ++ V +   +   T A
Sbjct: 154 SVEVVELAPLDVLCQRHDGPVG-TIAQTFRTLMTTLRCNQNPQLQQRVGICGRD--ATVA 210

Query: 61  EKLRCDTVVTVPGYFT----------------LPENSEGVILTEITGGQYAVAVARVVGD 104
              R    +                       + E   GV+   + GG YAV       +
Sbjct: 211 SGFRYHAGIIAASQTAFSRAIERLDESAQQSCVTEPPPGVVPLRLEGGLYAVHRLVGPYE 270

Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAV 152
             +  +   ++  L  S Y    +P  E+Y +            ++ + +
Sbjct: 271 LISPTFRALYSGWLPRSGYRRDQRPGLELYRSLPDRGALQPCITDLLIPI 320


>UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria
           RepID=B2TBR6_BURPP
          Length = 297

 Score = 85.3 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 4/133 (3%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPKEWVAVYYDNPDETPAE 61
            E+ +     V      GP   T+ + F  LM  +   +N V  + V +   +P     +
Sbjct: 145 VELTEIAPFDVLSLRHDGPVA-TIGQTFRSLMTMLRCDENAVMDQRVGICVRDPAV--KD 201

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
                  +         E S+ V    + GG YAV          +  +   +   L  S
Sbjct: 202 SFSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLIGPYALISPTFRALYGGWLPQS 261

Query: 122 AYEMLPKPCFEVY 134
            Y    +P  E+Y
Sbjct: 262 GYLRDRRPALELY 274


>UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas
           RepID=B0RPV2_XANCB
          Length = 319

 Score = 84.6 bits (208), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           +   ++  E   V      G ++  + +GF ++  W +   ++      + V   +  + 
Sbjct: 164 LQVTVQWLEPLEVVVLRQRGAFDD-LDRGFGRIAAWAERAGVIEHLHALIGVPLSDHRDV 222

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           PA++   +  +        P     + +  +  G +AV               +     L
Sbjct: 223 PAQQHLFECGIAFATAVAPP---APLHVRVLGEGAHAVLRHTGSYAGLEDALDRLLADWL 279

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
             S + +   P   +YL++       D+  ++ V V
Sbjct: 280 PGSGHALRDAPLHYLYLDDPETVAEADLRADIRVPV 315


>UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CKN8_9FIRM
          Length = 167

 Score = 83.8 bits (206), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 17/155 (10%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAE 61
           +I++ +  T+A     G +    K   E     +  +N++      + +  DNP +T  +
Sbjct: 23  KIEEFKDVTIAYMRRTGDYGFKNKILMENFKEHLRKENLLNSNSIILGIALDNPADTDRD 82

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW---YQFFNSLL 118
           KLR D  + V G     E +  + + +I  G YAV        D A  W    Q    L 
Sbjct: 83  KLRYDVGLIVSG-----EPNTALDIRKIPDGMYAVFELPHTEQDVAAFWSNIEQLVGDLT 137

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            D       KP  E Y  +  +      E  + ++
Sbjct: 138 VDK-----AKPMIERYSAD--KVAKHLCEFCIPLK 165


>UniRef50_Q9K5S9 BH4009 protein n=1 Tax=Bacillus halodurans RepID=Q9K5S9_BACHD
          Length = 117

 Score = 79.9 bits (196), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 40  KNIVPKEWV--AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVA 97
             ++  + +   +  D P+ TP EK R D  + +     L      V    +  G YAV 
Sbjct: 2   NGLLDDQAIILGISQDPPETTPPEKCRYDACIVISDEQPL---DGSVREGILPAGLYAVY 58

Query: 98  VARVVGDDFAKPWYQFFN-------SLLQD 120
             +   +   + W  FF          +  
Sbjct: 59  KVKHTAEAMEQAWGTFFPNSKAVGMKWIPS 88


>UniRef50_A0M275 Effector binding transcriptional activator protein n=1 Tax=Gramella
           forsetii KT0803 RepID=A0M275_GRAFK
          Length = 163

 Score = 79.6 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126
               V  +  +P+   G+   EI  G+YAV + +    +FA+     FN  L +S Y++ 
Sbjct: 76  AATEVSDFKEIPK---GLEKLEIPAGKYAVFIHKGTASEFAETSNYIFNEWLPNSDYDLD 132

Query: 127 PKPCFEVYLNN--GAEDGYWDIEMYVAVQPK 155
            +P FEV   +  G E+     ++++ +  K
Sbjct: 133 DRPHFEVLGADYKGPENPDSKEDIWIPITAK 163


>UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus pumilus
           RepID=A8FC61_BACP2
          Length = 149

 Score = 79.6 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPK----EWVAVYYDNP 55
           MNY+I+      +      GP+  +   +  ++   W++   +  +        V  D+P
Sbjct: 1   MNYKIEIVSNMKMVYMRNKGPYGSKENVEMMKRFKQWINQHQLNDELKEYGIYGVPQDDP 60

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
            +   EK R D ++     F+  +    V    + GG+YAV       +     W Q   
Sbjct: 61  GKITPEKCRYDLMLMTNRDFSKDQM---VQTRHVEGGKYAVFTVTHTTEKVNLFWSQL-P 116

Query: 116 SLLQDSAYEMLPKPCFEVY 134
            ++Q++   M P    E Y
Sbjct: 117 QMIQNNQLNMRPASIMERY 135


>UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methanosarcina barkeri
           str. Fusaro RepID=Q46A44_METBF
          Length = 321

 Score = 79.2 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59
           M  ++K  E+  VA     G  E+ +++   +L  W+  K + + +   AVYY +P E P
Sbjct: 1   MEIKLKIVEEHQVASISHEGLVEE-MEEIIGELAGWIKQKRLKITQPPFAVYYTSPTEVP 59

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            EK++ +  +   G        E V +  +   +   A+ +    +    + +     + 
Sbjct: 60  PEKMQYEIGIPFQGD---TNGDERVKIKIMPKHKILSAIHKGPYAEIGSLYAEMM-QHII 115

Query: 120 DSAYEMLPKPCFEVYLNNGAE 140
           +S YEM+  P  E Y+N   E
Sbjct: 116 ESGYEMIGAPR-EAYINTPRE 135


>UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=O26725_METTH
          Length = 173

 Score = 78.8 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59
           M    K  E   VA     G + + + +   ++  WV    + +       YY+ P+E  
Sbjct: 21  MEISEKMVEGIRVAYIECRGSY-ERIPEYISEVAGWVLKNGLQMTGRVYGTYYNTPEEVD 79

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+L  +  V++ G     E  E V +  +   +   A+      +     +        
Sbjct: 80  EEELLYEIGVSIAGE---AEADERVKIKNLPSHRVIAALHEGPYTEVGPVIHALI-EYAM 135

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           ++ YE+   P  EVYLN+  E    ++  E+ + V+
Sbjct: 136 ENGYEIT-GPVTEVYLNSPLEVDESELLTEVQIPVK 170


>UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium
           RepID=C0CY04_9CLOT
          Length = 295

 Score = 78.4 bits (192), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 9   EKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAV-------YYDNPDETPA 60
           E+  +AG   +    Q  + + ++Q + +      + +   ++       Y ++ D T  
Sbjct: 148 EEIKIAGLRDITSISQNRIPQLWDQFLRFHGDLYELTETAYSICETRQTAYAEDGDVT-- 205

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
                     VP +  LPE    +  T +  G+YAV   R   +   + +   + + L  
Sbjct: 206 --FSVMVGSPVPDFSNLPET---LAQTTLRPGKYAVFTHRGSLEKLLQTYQYIYGTWLPS 260

Query: 121 SAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152
           S   +  +  FEVY       +D   ++++Y+ V
Sbjct: 261 SGQRLDDRDDFEVYERKVLAMQDPENEVKLYIPV 294


>UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus
           neapolitanus c2 RepID=D0KW30_HALNC
          Length = 287

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M           +     VG ++Q V   +     WV    +  K+  +V V +D+PD T
Sbjct: 129 MPVTHGVLPPLKIISQRFVGSYDQ-VPHYWRVFGAWVTQTGLDTKQGVFVGVTWDDPDVT 187

Query: 59  PAEKLRCDTVVTVPGYFTLPE---NSEGVILTEITGGQYAVAVARVVGDDF-AKPWYQFF 114
           P  ++R D    +P    L E    S  +    I GG YA    +    +     + +  
Sbjct: 188 PKGEIRYDCGF-LPQNPALLEQIPTSSDLTHQTIAGGAYAALAGQGHYHELVPDRYQRLV 246

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152
              L  S +++  +P  E +        +  W  E+ + +
Sbjct: 247 CQWLPSSGWQLDLRPALEWFAEAPWRMPEHEWRFEIRLPI 286


>UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12LA7_SHEDO
          Length = 297

 Score = 77.3 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
              +       +A     GP         +  + W  + +  P       + Y +    P
Sbjct: 144 KVTLVDLASIELAVVEHSGPVSNLHG-SLQAFIGWRRAMHTPPLVSRSFNLVYHDVKHVP 202

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A + R D    +     L     G++  ++  G+YA+           +     +   L 
Sbjct: 203 ASEYRLDIGAEI--GRPLTAQDVGMVSKQLPKGRYALLAHTGNEASLGEAINDLYGQWLV 260

Query: 120 DSAYEMLPKP 129
           +S   +   P
Sbjct: 261 NSGEPLADFP 270


>UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria
           RepID=Q15WE0_PSEA6
          Length = 350

 Score = 76.9 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 7/154 (4%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
            ++    +  +A     G   + V K   Q + W       P+  +   + Y++P + P 
Sbjct: 199 IQVIDFPRTAIAFLTHEGD-PEGVMKTVAQFIQWRKQYGPSPRTSKTYNILYNDPRDVPK 257

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           E+ R D   ++     +  N   V    I  G+ A           ++   + + ++  +
Sbjct: 258 EEYRFDVAASIRK--VVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISLN 315

Query: 121 SAYEMLPKPCF-EVYLNNG-AEDGYWDIEMYVAV 152
             YE+   P F E         +    I++Y+ +
Sbjct: 316 EDYEIRNAPLFVERVQGFPDVPENETIIDIYLPI 349


>UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1
           Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM
          Length = 295

 Score = 76.1 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 13/161 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE------WVAVYYDNP 55
             +I++   R        G + + + K F+ L+ W+   N   +       ++ + Y NP
Sbjct: 132 EIKIEEYPSRECVMITHKGEYLEGM-KTFDILVSWLVENNFYSETSVKSIPFITIPYANP 190

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQF 113
            E+     RCD  +++     +  N  G+    I+ G +AV       +   F       
Sbjct: 191 LESAGSDYRCDIAISI--NCKVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITNV 248

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152
               L ++ +E LP P    ++N+     +     ++ + V
Sbjct: 249 LTEWLPETQWEPLPAPILFEHINSPLFVPETELITKVCIPV 289


>UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium
           ALC-1 RepID=A8UMK3_9FLAO
          Length = 159

 Score = 74.9 bits (183), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 22/167 (13%)

Query: 1   MNYEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAV--YYDN 54
           MN ++ Q  ++ + G       G +   +   +++ M      KN V  E++A+  Y D 
Sbjct: 4   MNPKVIQISEKNLIGMKSTMHHGQFS-NIVTLWKRFMPNRRIIKNAVNNEFIALQEYIDF 62

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
            +            + V     L + ++G+    I  G YAV + + +    +K + +  
Sbjct: 63  NNF--EAAFDIWACIEV---TNLDDITDGMETFTIPEGAYAVFLQKGMDA--SKTYQKIM 115

Query: 115 NSLLQDSAYEMLPKPCF----EVYLNNGAEDGYWDIEMYVAVQPKHH 157
              L  S Y +  +P F    E Y N   +    + + YV V+ KH 
Sbjct: 116 TEWLPTSGYIIDDRPHFQVMGEKYKNGSPDS---EEDFYVPVR-KHQ 158


>UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepID=C5QV75_STAEP
          Length = 154

 Score = 73.0 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 14/158 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV----PKEWVAVYYDNP 55
           M Y+I++ +  +V    ++G ++     +  +    W+ + +          + +  DNP
Sbjct: 1   MKYKIEKLDDSSVVYMRMIGTYQSDENFEMMKTFKHWIHTNHYWKYVEKYGVLGIALDNP 60

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
               + + R D V+ +        N + +      GG YAV        +    +     
Sbjct: 61  LHVQSNQCRYDVVLRIDE----TVNDQTISKRNFIGGIYAVFKISHTKRNIENFFSHL-E 115

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAV 152
           ++L ++   M  +P  E Y+    E+G   + EM V +
Sbjct: 116 NILNETHLRMRNEPIIERYI---EEEGTDKVCEMLVPI 150


>UniRef50_A3XLX8 Probable transcription regulator, MerR family protein n=1
           Tax=Leeuwenhoekiella blandensis MED217
           RepID=A3XLX8_9FLAO
          Length = 161

 Score = 73.0 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126
             V V  + T+PE   G+    I GG YAV        +F +     + + L  S Y++ 
Sbjct: 74  AAVEVTDFDTVPE---GMQTKTIAGGLYAVFTHVGPVKEFVETSNYIYGTWLPQSGYKLD 130

Query: 127 PKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155
            +  FE     Y   G E    + E+++ +Q K
Sbjct: 131 KRAHFERLGEKYY--GPEHPESEEEIWLPIQLK 161


>UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n=1 Tax=Bordetella
           petrii DSM 12804 RepID=A9I8N6_BORPD
          Length = 291

 Score = 72.6 bits (177), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 6/131 (4%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
             +++            G   Q       F +L   + S +++   +  + YD P   P 
Sbjct: 140 VTVRELPPTRFWAVRYEGMSSQKYACWNDFRRLFAHLRS-DLLTGPFFGLTYDTPMFVPT 198

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
             +R    V VP  F             + GG+ A+  A    D     +    +  L  
Sbjct: 199 PFMRYYCGVQVPPGFGPKPKDA--FEITLPGGRIAMCEAHCTADGLPALYANLLDQWLPR 256

Query: 121 SAYEMLPKPCF 131
           S Y +    CF
Sbjct: 257 SGYSLRAS-CF 266


>UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas
           RepID=A4XZN4_PSEMY
          Length = 277

 Score = 72.6 bits (177), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 8/133 (6%)

Query: 23  EQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENS 81
            Q +   +++   ++         E   V   NP+            V V     +P   
Sbjct: 150 AQGIAALWQRFGPYIGRIPGQQGSETFGVCC-NPE--DDGSFEYIAGVLVNRAAEVP--- 203

Query: 82  EGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAE 140
            G+ L  +   +YAV +         + +   F   L  +  +    P FE Y  +    
Sbjct: 204 AGLTLQRLAAHRYAVFLHEGHISSIHETFNAIFQHWLPTAGVQTAAAPEFERYSEDFDPM 263

Query: 141 DGYWDIEMYVAVQ 153
            G   +E++V ++
Sbjct: 264 AGTGRVEIWVPLR 276


>UniRef50_Q6MJL0 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus
           RepID=Q6MJL0_BDEBA
          Length = 178

 Score = 72.6 bits (177), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 14/130 (10%)

Query: 10  KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVV 69
              +     VGP+ + V K  E++  ++ S+N+        Y D+P      +LR     
Sbjct: 38  PFKIVYVEHVGPYHK-VNKQLERIEKYMTSQNMTCGRTFGEYLDDPQVVEEARLRSKVGC 96

Query: 70  TVPGYFTLPENSEGVILTEITGGQYAVAVAR-----VVGDDFAKPWYQFFNSLLQDSAYE 124
            + G    P+  EG+ + EI   +Y +AV            + +         L+ +   
Sbjct: 97  IITGE--PPQLVEGLQVGEIPQRKYVMAVFTGSPGIGPLKVYPRVNDFMLKQNLKQTG-- 152

Query: 125 MLPKPCFEVY 134
                  E+Y
Sbjct: 153 ----AVIEIY 158


>UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA
          Length = 306

 Score = 72.6 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 21/168 (12%)

Query: 2   NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
              ++ +    + G    + G       +   V K +++L    +S ++     + V   
Sbjct: 140 EVRVETKPAFILKGMRGEITGLFSLDPNFADVVPKLWQRLDAEANSTSLSFGHCLGVV-- 197

Query: 54  NPDET----PAEKLRCDTVVTVPGYFTLPE----NSEGVILTEITGGQYAVAVARVVGDD 105
             D T        L     + +     +P      SE + +  +    YA    +   D 
Sbjct: 198 --DVTKVAFDGSNLFYWAGIELRSDIAMPALPSVVSEQLAILNVPKQTYAAVKHKGPIDR 255

Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYW-DIEMYVAV 152
             +    F    L  S Y  +     EVY ++   D    ++E +V +
Sbjct: 256 LPQTLEWFILHWLPTSGYRGVDGYELEVYPDDYQADAAHAEMEYWVPI 303


>UniRef50_A5FHW5 Transcription activator, effector binding n=2 Tax=Flavobacteriaceae
           RepID=A5FHW5_FLAJ1
          Length = 160

 Score = 72.6 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK---------NIVPKEWVAVY 51
           M   I+   ++ + G H+   + +   K FE    ++ S+         N+   E   + 
Sbjct: 1   MEARIETLSEKKLIGKHIEMSFIEN--KTFELWSSFMPSRKNIKNTIDDNLYSLEVYTLD 58

Query: 52  Y-DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110
           + DN D  P++  +    V V    T+PEN E +I   +  G YAV V      +  K +
Sbjct: 59  HFDNFD--PSKTFQKWAAVEVQNLDTIPENLETLI---VPDGLYAVFVHYGPASEAHKTY 113

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155
           +  F   L +S Y +  +P F V       +D   + E+++ ++ +
Sbjct: 114 HPIFTEWLPNSKYTVDNRPHFAVMDHKYKKDDPDSEEEIWIPIKNR 159


>UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bacteria
           RepID=B0S9N2_LEPBA
          Length = 158

 Score = 72.2 bits (176), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126
             V V        N +G    EI  G Y+V + + +  +    +   F + L +S Y++ 
Sbjct: 73  AGVEVSAV----TNVDGFNQLEIPSGLYSVFLYKGLPSEAGAFYQNLFMNWLPNSGYQLD 128

Query: 127 PKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155
            +P FEV    Y N+       +  +Y+ ++P+
Sbjct: 129 NRPHFEVMGERYRNDDPSS---EELVYIPIKPR 158


>UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseudomonas aeruginosa
           RepID=B7V1U1_PSEA8
          Length = 270

 Score = 71.5 bits (174), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 16/159 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVG-PWEQTVKKGFEQLMM----WVDSKNIVPKEWVAVYYDNP 55
           M+  I +    +V G    G     T+ + +E+ +          +  P+    +    P
Sbjct: 120 MHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHD--PEVSYGICAQQP 177

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           +     +        V   + +PE   G++  ++   +YAV   +      A+ +   ++
Sbjct: 178 N----GEFHYVAGFEVQEGWPVPE---GMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYS 230

Query: 116 SLLQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAV 152
            LL +   E      FE Y     G  D    +++Y+ +
Sbjct: 231 HLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPI 269


>UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=Methanomicrobia
           RepID=A3CSG8_METMJ
          Length = 286

 Score = 71.5 bits (174), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 28/164 (17%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI------VPKEWVAVYYDNPDET 58
           IK             G +++T+ +   +L  +V  ++       +    + + +D     
Sbjct: 130 IKDIPTVRALSLRERGIYQETIPRMIRELFTYVCPEDGRQPAARIAGPIMFICHD----- 184

Query: 59  PAEKLR---CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
             E+ R    D  V VP   ++  +   V +  + GG++   +         K + + F+
Sbjct: 185 --EEYRETDADIEVAVPITGSVSLDGTAVEVVNLPGGRFLSVLHTGPYPGVGKAYERLFS 242

Query: 116 ----SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
                 L  S       P  E+YLN+ AE    ++  E+   V+
Sbjct: 243 YMNEHRLVPSG------PSRELYLNDPAEVPEEELLTEVQSPVK 280


>UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium
           hominis ATCC 15826 RepID=C8N9B6_9GAMM
          Length = 263

 Score = 71.5 bits (174), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 12/154 (7%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62
             ++     TVA     G   Q +   F QL   +  +     +  A    +P   P   
Sbjct: 116 VHLETRAPVTVAMLAHSGE-CQRLGDTFYQLESLLRLRGAETSQARAFSI-HPAIDPLHA 173

Query: 63  LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122
            +       P Y   P     +   EI GG+YAV   R    D    +  F       + 
Sbjct: 174 DKHVAASVAPEYAMAP-----LQAGEIAGGRYAVLRHRGPYADLDSVYDWFVQEWFPAAG 228

Query: 123 -YEMLPKPCFEVYLNNGAEDGYWD---IEMYVAV 152
            +    +P    Y  + + D       +++ + +
Sbjct: 229 QHIASDRPVILEYY-DPSSDIPVQQKRVDICIPL 261


>UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium
           gleum ATCC 35910 RepID=C0YJ67_9FLAO
          Length = 274

 Score = 70.7 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 16/159 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58
           +  EI   +   V  +     +   + ++  +E+ M   +  +    E+  V  D P   
Sbjct: 126 LEPEIVYLKPMQV-YYQSTNTYYNNEEIEVLWEKFME--NKFHDSGTEYFGVIADEPLIK 182

Query: 59  PAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
                R D   ++      LP          I GG+YA  +     +   + + + ++  
Sbjct: 183 TEISCRYDACSSMQSENKKLPS-------KIIFGGKYARFIHPGSYETIDETYTKIYSRW 235

Query: 118 LQDSAYEMLPKPC---FEVYLNNGAEDGYWDIEMYVAVQ 153
           +  S  E    P    +E Y  +   +      + + ++
Sbjct: 236 IFHSELEFSHTPIIEKYERYSEHAENEEEQLTYILLPLK 274


>UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax=Roseiflexus
           castenholzii DSM 13941 RepID=A7NGL3_ROSCS
          Length = 156

 Score = 70.3 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 1   MNYEIKQEEKRTVAGF-----HLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYD 53
           ++  I+      VA F        G +   +++GF Q+  W   +   +  +  + +   
Sbjct: 9   LHVTIQDLPPFRVACFFCNLQLATGQYSNQIQQGFRQIKSWALQRGLDLTRQRIIGI--- 65

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
            P     +    D  V +P    + ++S    +    GG+YAV +         +   +F
Sbjct: 66  -PHVRDGQLTGYDCCVELPENGVIDDHS--FQMKRAPGGRYAVLLLEKNSAVIGEAIGRF 122

Query: 114 FNSLLQDSAYEMLP-KPCFEVY 134
           F          + P +  +EVY
Sbjct: 123 FTEYAPAHHLVVDPQRFSYEVY 144


>UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium
           beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8
          Length = 290

 Score = 70.3 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 33/173 (19%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKK-----GFEQLMMWVDSKNI--VPKEWVAVY-- 51
           +  EI   + + V GF     +  +++K      +E+L   ++ +    +     ++Y  
Sbjct: 131 LQPEIVTFQPKCVVGFR----YYMSIEKNNSIEMWEKLNAQLEKQKYISMNNNRYSIYET 186

Query: 52  ---------YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV 102
                      N + T          +       +PE   G+ L EI+GG+YA  V +  
Sbjct: 187 SGTCLQNTFNKNSETT------LFIGIETSDDNNIPE---GMELKEISGGKYAKFVHKGT 237

Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
             +    ++  +     +S++++  +   E Y     GAED    IE+Y  +Q
Sbjct: 238 VKNLISTYHYIWGVWFPNSSFQLDDRDDLECYTEKFLGAEDEESQIEIYFPIQ 290


>UniRef50_A5V1E8 Transcription activator, effector binding n=1 Tax=Roseiflexus sp.
           RS-1 RepID=A5V1E8_ROSS1
          Length = 155

 Score = 69.9 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 59/161 (36%), Gaps = 22/161 (13%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYD 53
           ++  I+      +    ++     G +   ++ GFE +  W   +   P   + + +   
Sbjct: 9   LHVTIRDLPPTMIVYTSVLLQQMKGSYNDQIRDGFENIKDWARQQGYDPSALKVIGI--- 65

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
            P+   A+ +  +  + +      P N+E +   ++ GG+YA+           +   +F
Sbjct: 66  -PNINGAQLIGYECALELE---IAPLNTEDIHTKQLPGGRYAILSLEKDSATIGETIRRF 121

Query: 114 FNSLLQDSAYEML-PKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           F   +      +   +P +E+Y           ++  V +Q
Sbjct: 122 FAEYVPQHQLTVDLRRPNYEIYY-------EHVMDFCVPIQ 155


>UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax=Alkaliphilus
           oremlandii OhILAs RepID=A8MKC5_ALKOO
          Length = 149

 Score = 69.9 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 10/156 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYD--NPDE 57
           M  ++   +     G    G      + + +E        K+I  K     YY   + D 
Sbjct: 1   MEGKLFNIQGFKAVGISYFGDNANGEIPRLWEAFNQ--QYKDIKNKSKSMFYYGICDSDM 58

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
               +      V V  +  +PEN   +    +  G+Y V        D  + +   F+  
Sbjct: 59  DAQGRFHYTACVEVDHFEDIPEN---MEAKAVPEGRYLVYTYSGDIKDLGEFYGNIFSKW 115

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           L  S YEM  +P  E+Y     ++G  + ++Y+ V+
Sbjct: 116 LPASEYEMDYRPQLELYDERFMQNG--EFDIYIPVK 149


>UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhodobacterales
           bacterium HTCC2654 RepID=A3VB55_9RHOB
          Length = 157

 Score = 69.2 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 14/160 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPW----EQTVKKGFEQLMMWV-DSKNIVPKEWVAVYYDNPD 56
           N  I +   + + G   VG +       + K +EQ        K+ V      +      
Sbjct: 6   NAAIVESRAKLIIGL--VGDYSLDTRGEIPKLYEQFFAIRDGIKHRVSDVLYGISM---G 60

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
             P    R    + V     LPE +  + L +   G+Y V   R    +    +   F  
Sbjct: 61  AKPDGSFRYGVGIEVEEAEDLPEGACEMHLVD---GEYVVFSQRTPIAELPARFDAVFAE 117

Query: 117 LLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAVQPK 155
            L  S +       FE Y ++   EDG    E++V V PK
Sbjct: 118 WLPQSDFVQREGAVFECYPDDDSPEDGKMLYEIWVPVAPK 157


>UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8D1P7_HALOH
          Length = 231

 Score = 69.2 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 12/159 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60
              I + +   VA +      E    + +E +  W    N++         +DNP  TP 
Sbjct: 79  EVRIVELKPVWVASYRA--EAESPEPRAWEVIFKWAKKYNLLQLPGTRFFGFDNPSPTPD 136

Query: 61  EKL-RCDTVVTVP-GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           + +   +  VT+P   F +PE    + + + +GG YAV        D  + W Q +   +
Sbjct: 137 KAVYGYEFWVTIPHKNFNIPE---EMKIRKFSGGLYAVTNTNFREFDVGERWKQLY-KWV 192

Query: 119 QDSAYEMLPKPCFEVYLNNGA---EDGYWDIEMYVAVQP 154
           ++S +      C E ++       +     +++Y  ++P
Sbjct: 193 KESEFSYREGICLEEHITLTGYNLDINTVQLDLYEPIKP 231


>UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=root
           RepID=Q187G0_CLOD6
          Length = 288

 Score = 68.8 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 11/161 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK---NIVPKEWVAVYYD---- 53
           MN  I++++  TVAG +            +++L   V  +   N+   E V V +D    
Sbjct: 127 MNIRIQKKKAFTVAGVNQQNINSSICASLWQKLFSKVSHEEMLNLGTGEVVGVCHDILSL 186

Query: 54  -NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWY 111
            N D   +  +       V         S G+ + EI   +YAV        +     W 
Sbjct: 187 DNHDVLDSNTINYMAGYIVTD--VDKARSMGLDILEIGETEYAVVELTGSVPECIHNGWK 244

Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
                   +  Y    KP FE Y         + +E+++ V
Sbjct: 245 YAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPV 285


>UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter
           vinelandii DJ RepID=C1DQ04_AZOVD
          Length = 325

 Score = 68.4 bits (166), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 6/126 (4%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDETPA 60
             ++    + V      G +   V+  + +    +D     +   + V +  DNP+ TP 
Sbjct: 172 VRVESFPSQPVLAMRFYGSYA-LVEDNWRRFAECLDRAGFPLADAQAVGIVQDNPEITPN 230

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           + +R D    V   F     +  +    +   ++A    R         +    +     
Sbjct: 231 DLVRYD-CAIVDAGFDREHPA--LSRLILPAARFACLEHRAPYSHIFPVYRTIGSVWGPR 287

Query: 121 SAYEML 126
           S     
Sbjct: 288 SGECFG 293


>UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio
           coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR
          Length = 284

 Score = 68.4 bits (166), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 14/162 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPD 56
           M  EI  +    + G      +     ++ + +     + D+  N V  E+  +Y     
Sbjct: 129 MEPEIITQPAIKLVGIANQ--YTDEDLSLPRLWSGFAPYRDTIANRVGDEFFGIYE---S 183

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
              AE+      +         +  EG+I  E+    YA    +       +     + S
Sbjct: 184 YEEAEEGTTFVYICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLRYIWGS 243

Query: 117 LLQDSAYEMLPKPCFEVYL---NNGAEDGYWDIEMYVAVQPK 155
            L  SAYE   KP FE+Y    N+   +    + +   V+ K
Sbjct: 244 WLPKSAYEYEEKPDFELYPAGFNDADPENKLYLNI--PVRKK 283


>UniRef50_A2FCJ7 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis
           RepID=A2FCJ7_TRIVA
          Length = 198

 Score = 68.4 bits (166), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGF----EQLMMWVDSKNIVPKEWVAVYYDNPDE 57
           + +I+      +     +GP+++  K       E+L            +++ +YYD+P  
Sbjct: 30  SVKIEHIAPVKIVYTTFIGPYKEAWKPSMQLFNEKLPDDFKPHCPGATKYIGIYYDDPKI 89

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVA 99
           T  E  R      V   F L +++ G + +  I  G+ A    
Sbjct: 90  TKPEDCRSVIGFVVDDDFKLKDDANGKMHVDTIEIGEAACVHF 132


>UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseudomonas entomophila
           L48 RepID=Q1I6P7_PSEE4
          Length = 165

 Score = 68.0 bits (165), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 8/126 (6%)

Query: 30  FEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88
           +++   W+         +   V + NPD            V V G  TLPE   G     
Sbjct: 44  WQRFAPWLGRVPGQHGHDSYGVCH-NPDG--QGAFDYLAGVEVTGAATLPE---GFTTLV 97

Query: 89  ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY-WDIE 147
           +    YAV   R   +     +   F   L  S         FE Y            +E
Sbjct: 98  LAPQHYAVFEHRGSLECIKTTFDAIFTQWLPASGKRQADAAVFERYPAGYDPTAPQALME 157

Query: 148 MYVAVQ 153
           +++ ++
Sbjct: 158 IWIPLE 163


>UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786
           str. D14 RepID=C6J7H0_9BACL
          Length = 301

 Score = 68.0 bits (165), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLM--MWVD--SKNIVPKEWVAVY 51
           M Y I+Q   + + GF +      G   + +   +++ M   W       + P   + V 
Sbjct: 135 MQYRIEQIPAKRILGFAIQTTTEDGQNHKDIPAFWQKYMHEQWGSRVPGKLHPNVELGVC 194

Query: 52  YDNPDETPAEK---LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD---- 104
                 T  ++    R      V       E  EG+    +    YA+      G+    
Sbjct: 195 ------TALDEDGTFRYIIGFEVDE---TTEVQEGLTEYRVPAQTYAIFTTPPAGEADFS 245

Query: 105 -DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
               + W + F S    S YE +  P FE Y           I++Y+ VQP
Sbjct: 246 SSIQQTWDEIFTSWFPTSGYEQVAAPDFEWYDERCWPKEGKQIDIYIPVQP 296


>UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=Shewanella
           frigidimarina RepID=Q07ZY4_SHEFN
          Length = 301

 Score = 67.6 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 4/133 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59
           + +I   + +++A     G     + +   + + W     + P       + Y +P+ + 
Sbjct: 138 SVDIVSFDAQSLAVMEHHGDPA-LLPQTIARFIEWRRQFALSPTNCRTFNLLYSSPELSA 196

Query: 60  AEKLRCDTVVTVPGYF-TLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             + R D  V++      L   S  ++L  I  G+ A+                 +   +
Sbjct: 197 KTQYRIDIGVSLNAETQALVSESSQIMLKSIPQGRCAMIKYSGDDIGLTAAIDYLYRDWV 256

Query: 119 QDSAYEMLPKPCF 131
             +   +   P F
Sbjct: 257 NANDVTLRNYPLF 269


>UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokdonia donghaensis
           MED134 RepID=A2TVN7_9FLAO
          Length = 165

 Score = 67.2 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 51  YYDNPDETP---AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107
           Y D+   TP     K      V V     +P     + + +I  G++AV   +    DF 
Sbjct: 61  YADDFMTTPFTPETKFVKWAAVAVTTENDIP---NQLEVLKIPKGKWAVFPYKGTTRDFG 117

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQ 153
                 ++  L +S Y++  +P +E     YL  G  +   + E+++ ++
Sbjct: 118 VFAQYIYSQWLPNSGYQLDDRPHYEFMPEDYL--GPNNPQSEEEVWIPIK 165


>UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria
           RepID=Q13JQ4_BURXL
          Length = 281

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 16/157 (10%)

Query: 4   EIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYY---DNPDE 57
             +  +   VAG            +   +++   +       V      V Y   DN + 
Sbjct: 133 RFEDGKAFLVAGLNERYTNETCAAIPSQWQRFGDYFGKVPGQVGNVAYGVCYNADDNGNI 192

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
                      V V  +  LP     +    I+  +YAV   R       + W   +N  
Sbjct: 193 D------YLCGVEVSDFSALP---AELSRLRISPQRYAVFSHREHVSTIRRTWNTIWNQW 243

Query: 118 LQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQ 153
           L  S +     P FE Y        G   +E+++ ++
Sbjct: 244 LPASGHIPADAPNFERYDAKFDPVSGMGGLEIWLPLK 280


>UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134
           RepID=A1ZPC8_9SPHI
          Length = 159

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126
             V V  +  +P+   G+    +  G+YAV + +     F   +   F   L  SAY + 
Sbjct: 75  AAVEVSSFENVPK---GMHAFTLPSGKYAVFIHKGPASAFKPTFDYIFGEWLPKSAYTLD 131

Query: 127 PKPCFEV----YLNNGAEDGYWDIEMYVAV 152
            +P FE+    Y+     D   + E+++ +
Sbjct: 132 QRPHFELLPEGYV---PTDPNAEEEVWIPI 158


>UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria
           RepID=C7RI56_ANAPD
          Length = 282

 Score = 66.5 bits (161), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV---PKEWVAVYYD---N 54
           M+ +I++++   VAG            K +++L+  V  +        +   V YD   +
Sbjct: 127 MDIKIEKKKAFKVAGIKSDVTKSSNFPKVWDRLVEKVPREKFEEFGSGQIFGVGYDYIMD 186

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQF 113
                 +         +       E   G+    I   +YA+   +        + W   
Sbjct: 187 ----EEDSFIYLAGFDLTDEVKAKEL--GLDTLSIPEKEYAIVSLQGPIPKCIHEGWKYI 240

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            +       Y     P FEVY +       + +E++V +
Sbjct: 241 ISYFFPKEGYRHDESPDFEVYGDGDPNSEDYKMELWVPI 279


>UniRef50_B8FW41 Transcription activator effector binding n=6 Tax=Clostridiales
           RepID=B8FW41_DESHD
          Length = 146

 Score = 66.5 bits (161), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 29/164 (17%)

Query: 1   MNYEIKQEEKRTVAGF----HLVGPW-EQTVKKGFEQLMM---WVDSKNIVPKEWVAVY- 51
           MNYEI    ++ V G         P  +Q +   +++ M    WV  +N      + +Y 
Sbjct: 1   MNYEIVTLPEKIVVGVTARTSHTDPQCQQVIGGLWQKFMGEGIWVSIQNQANPYCLGLYS 60

Query: 52  -YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAKP 109
            YD        +   D  V   G       +  +    I  G YA+   +  V  D A+ 
Sbjct: 61  GYD--------ETSYDVTV---GAEVTKNGNPELTEKIIPAGSYALFRIKGDVVKDVAEA 109

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           W + +   L            FE YL+N  E+G  +I++Y+A++
Sbjct: 110 WDKIWT--LPLERSFTGD---FEEYLSN--ENGVAEIKIYIALK 146


>UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium
           spiritivorum RepID=C2G4Y4_9SPHI
          Length = 278

 Score = 66.1 bits (160), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 13/112 (11%)

Query: 46  EWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD 105
           ++  +  D P        R DT        +L   +  +    I GG+YA        + 
Sbjct: 174 DFYGIVADEPLIRENLNCRYDTC------SSLQSLTSRLPSKTIGGGKYAQFTHYGRYET 227

Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIE-----MYVAV 152
               + Q ++  +  +       P  E Y      D    +E     +++ +
Sbjct: 228 IEDTYSQIYSGWILTAGLRFSHTPVIEKY--TRHPDNTDSVEEQITYIWLPL 277


>UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales
           RepID=C6CRY2_PAESJ
          Length = 301

 Score = 65.7 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 1   MNYEIKQEEKRTVAGF----HLVGPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAV 50
           M Y+I  +    V G+       G   + +   +++ +     KNI           + +
Sbjct: 134 MEYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNRVHKESPVELGI 193

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVA-RVVGDDF--- 106
            Y+   +  ++       +    +  +    EG++  E  G +YAV    +V  + F   
Sbjct: 194 CYNF--DMGSDSFSYLIGMEAESFDGVE--GEGLVCREFDGAEYAVFTTPKVPREQFSSS 249

Query: 107 -AKPWYQFFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155
               W   F      S YE    P FE+Y   +  E     +++Y+ ++ K
Sbjct: 250 IQNTWMTVFGEWFPHSGYEHAGTPEFELYDERSNHELSEIQMDIYIPIKKK 300


>UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=Bacteria
           RepID=D1ARF9_SEBTE
          Length = 267

 Score = 65.7 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 26/161 (16%)

Query: 3   YEIKQEEKRTVAGFHL---VGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD---NPD 56
             I + + + +        V  +   + + +E +M   D    +    +++++D   +P+
Sbjct: 125 VSITETQPKNILFLRQKMNVSDYGGYLGRLYEIIMK--DKYKTIGAP-LSIHHDKEFDPE 181

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
                    D  + VP      +        E++GG  A  + +    +    + +    
Sbjct: 182 N-------YDIEIAVPVEDKTEKT------RELSGGLCATVLYKGPYSNLTSVYAKLI-Q 227

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155
            ++   Y++   P +E+YL N       +   E+Y  V  K
Sbjct: 228 WIETEGYKITNAP-YEIYLTNPGTTAPENYMTEIYFPVAKK 267


>UniRef50_Q28T08 Transcription activator effector binding n=1 Tax=Jannaschia sp.
           CCS1 RepID=Q28T08_JANSC
          Length = 267

 Score = 65.7 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 14/152 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTV----KKGFEQLMMWVDSKNIVPKEW-VAVYYD-N 54
           M +  K    +          +   +       F ++  +V    I P    ++VY   +
Sbjct: 115 MEFTRKTLPAQPYIYVERECAYGPEIADAMGSAFGEIFAFVGQSGITPLSMPMSVYTGMD 174

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
           P       LR    V V       +    +    +  G     + +   D          
Sbjct: 175 PKI-----LRFRGGVIVSTD-DAAKAEGAIKSDALPAGDVMHVIHKGPYDTMNLTHKAL- 227

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI 146
              L+         P +E+Y ++  +    D+
Sbjct: 228 WEHLEAQG-TPGTMPTWEIYTDDPGDTAPEDL 258



 Score = 39.1 bits (90), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 8   EEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLR 64
                V      GP++    T K  +E L        +   E   +Y D+P +T  E LR
Sbjct: 203 LPAGDVMHVIHKGPYDTMNLTHKALWEHLEAQGTPGTMPTWE---IYTDDPGDTAPEDLR 259

Query: 65  CDTVVTV 71
            +   T+
Sbjct: 260 TEIFCTI 266


>UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium
           longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI
          Length = 286

 Score = 65.3 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 83  GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVY----LNNG 138
            +    +  G+YAV   R    +  K +   F + LQ +  E+  +  FEVY    L+  
Sbjct: 214 ELAKKTLRAGRYAVFTHRGTLGNLYKTYQYIFGTWLQTTREELDDREDFEVYEHEILSFD 273

Query: 139 AEDGYWDIEMYVAVQ 153
             D   ++++++ ++
Sbjct: 274 DPDN--EVKIFIPIK 286


>UniRef50_C5DA82 Transcription activator effector binding n=1 Tax=Geobacillus sp.
           WCH70 RepID=C5DA82_GEOSW
          Length = 160

 Score = 65.3 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 1   MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQL-------MMWVDSKNIVPKEWV 48
           M Y++ + +   V G       + G     + K ++++       ++W  +   +    +
Sbjct: 1   MKYKVIERDSFQVVGIKREFSLVNGENLVDIPKLWDEVNEDGTVDLLWKLNNGQIKG-VL 59

Query: 49  AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107
            V   N      + +         G         G++  E+   ++ V        D   
Sbjct: 60  GVCVTNSGTQSKQVMDYWVATEYDGD-----TPNGLLKFEVPASKWVVFEVHGPMPDAMQ 114

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           K W Q F+  L  S+YE    P  EVY +       +  E+++ V+
Sbjct: 115 KAWNQIFSEWLPSSSYEHAGTPALEVYTDENPLSPDFYSEIWIPVK 160


>UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=uncultured archaeon
           RepID=D1JG23_9ARCH
          Length = 332

 Score = 65.3 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM--WVDSKNIVPKEWVAV----YYDNPDET 58
           +K    + V      G +E+ + +   +L    +         +   +    Y+DN    
Sbjct: 182 VKDVSSQRVLSRREKGTYEEVIPRLIGELSGRVFGPENQRARVKCTGIPITIYHDN---- 237

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             ++   D  V +P    +    E   +  +  G+    + +    D    +   F   +
Sbjct: 238 EYKEKDADIEVALPVSGNITVGPEY-EVKILDEGKVVSYIHKGPYQDAGGAYRAVF-EYI 295

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
                +++     E+YLN+  E    ++  E+ V V+
Sbjct: 296 DKKGLKVVGNYR-ELYLNDPKETPETELLTEIQVPVE 331



 Score = 43.7 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA----VYYDNPDE 57
            YE+K  ++  V  +   GP++      +  +  ++D K +   + V     +Y ++P E
Sbjct: 261 EYEVKILDEGKVVSYIHKGPYQDA-GGAYRAVFEYIDKKGL---KVVGNYRELYLNDPKE 316

Query: 58  TPAEKLRCDTVVTVPG 73
           TP  +L  +  V V  
Sbjct: 317 TPETELLTEIQVPVED 332


>UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio
           RepID=B5EUU0_VIBFM
          Length = 299

 Score = 65.3 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 13/161 (8%)

Query: 3   YEIKQEEKRTVAGF--HLVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDN 54
             ++ +    V G    L G       + + V   +  L   +     +P++  AV   +
Sbjct: 140 VRLEYKPSFKVLGLSTRLQGILSDTPDFNEKVPSVWNALDTSIVYLPSIPEQKYAVI--D 197

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENS--EGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
             E  A+ L     +      T   N     + +  I   +YAV   +    DF+K    
Sbjct: 198 TREENADSLLYWAGINCEALSTDELNQHKADLQIITIPEQEYAVLPFKGAAQDFSKSVEW 257

Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
             +  L  S ++ +     E+Y ++  + G  D+E ++ ++
Sbjct: 258 LISEWLPTSGHQGIEGFDLEIYQSSTTQ-GVIDVEYWLPIR 297


>UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11SS0_CYTH3
          Length = 163

 Score = 64.9 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 65  CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYE 124
            D   ++    ++    EG+   E+  G Y V + +    + A  +     + L  S YE
Sbjct: 69  FDKCASI-EVTSMEAIPEGMEYIELPAGLYVVFLYKGDARNAAAVFQYILGTWLPASPYE 127

Query: 125 MLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPKH 156
           +  +P FEV    Y  +  +    + E+++ V+ K+
Sbjct: 128 LDIRPHFEVLGETYKKDDPDS---EEEIWIPVRDKN 160


>UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC 7120
           RepID=Q8YZW0_ANASP
          Length = 290

 Score = 64.9 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
              IK+     VA    + P   ++ + + ++  ++    +   ++ A  + +P     +
Sbjct: 140 EVVIKKVAPIQVASIRQILPDNPSIGQLYGEISEYLAQNGVKAGDYYAGIWHDPGYKDTD 199

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQ-YAVAVARVVGDDFAKPWYQFFNSLLQD 120
            +  + V+++ G       +E + + E+ G +  A  +     +  A+ +    +  ++ 
Sbjct: 200 -IDAEAVISIEGSIK---GNERIKIYELPGSETTACLIHHGSYETLAQAYATLVS-WIEA 254

Query: 121 SAYEMLPKPCFEVYLNNGAEDG 142
           + Y +   P  EVY+  G E  
Sbjct: 255 NGYNIT-APNREVYIIGGNEQN 275


>UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RQZ2_CLOCL
          Length = 272

 Score = 64.9 bits (157), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 12/156 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60
           +  IK      V     + P  +   K +++L  +    NI       A+YYD   +   
Sbjct: 120 DITIKSIPSYKVIAVRDIIPTYEGEGKLWDELCAFAGKNNIKAIGPSYAIYYDTGYK--E 177

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITG-GQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             +  + V+T+ G          V + E+    + AV   +    +    +       L 
Sbjct: 178 SDVDVEVVMTISGDIAETV---RVKVKELEAVDEMAVVFHKGHFHEMTSAYRAL-AIWLS 233

Query: 120 DSAYEMLPKPCFEVYLNNG-AEDGYWD--IEMYVAV 152
            + YEM   P   +Y     +E    +   E+   V
Sbjct: 234 ANEYEM-NGPIRAIYHKGPWSEQNPEEYLTEIQAPV 268


>UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax=Methanomicrobia
           RepID=B8GHG4_METPE
          Length = 155

 Score = 64.9 bits (157), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 10/157 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN-IVPKEWVAVYYD---NPDE 57
             +I +   + V G    G +   +     +L ++  S   ++    V + ++       
Sbjct: 3   EIQIIEVLPQLVLGMRQKGAYRD-IPAMLGELYIYGISHQSVLTGPPVFICHEGSVEEAM 61

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
              E    D  V  P   ++ E    + + E+ GG+ A  + R   +D    + + F + 
Sbjct: 62  VANETGDADMEVAFPIEGSI-EGEGPISIYELPGGRMAKVLHRGPYEDCGPTYTRLF-AW 119

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +++    +   P  EVYLN+       ++  E++V +
Sbjct: 120 IEEQGLAVT-GPVREVYLNDPTLVKPEELMTEIHVPI 155


>UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=1 Tax=Hahella
           chejuensis KCTC 2396 RepID=Q2SHR5_HAHCH
          Length = 278

 Score = 64.5 bits (156), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 12/156 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDS-KNIVPKEW-VAVYYDNPDET 58
             ++K+    T+ G          ++   + + +   D  +  V  E    +    P   
Sbjct: 128 EPQVKELPAFTLIGMEYRSSDVRDSIPMLWGRYLPREDEIRGRVNHEVSYGLCL--P--L 183

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
              + R    V V     +PE    V    +   +YAV             + +  +  L
Sbjct: 184 EDGEFRYIAGVEVEKGTPVPEGMVSV---TVAAARYAVLTHTGPVAGLNATFRKACSRDL 240

Query: 119 QDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAV 152
            +S  E +  P FE+Y     G +     +++Y+++
Sbjct: 241 PESGLERVDGPDFELYDRRFMGPDSAESQVDIYLSI 276


>UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=Clostridium
           RepID=B8I4L9_CLOCE
          Length = 452

 Score = 64.5 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVY-YDNPD--ETPA 60
           +K+ E   VA F   G   +     F  +  W++   + V ++ + ++ Y+NP       
Sbjct: 139 LKEMEPTRVAYFCYYGKQPEH--HAFTVMAQWLNKNGLNVNEQNLRIFGYNNPSPASPDE 196

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVA-VARVVGDDFA----KPWYQFFN 115
           E+   +   TV     +  N + V    + GG YAV  V R    D      K W + FN
Sbjct: 197 EEYGYEVCATVADNIVV--NDDLVKEKVLGGGLYAVTNVRRGQDGDIGGEIIKAWSR-FN 253

Query: 116 SLLQDSAYEMLPKPCFEVYLN-NGAEDGYWDIEMYVAV 152
           + L DS Y        E +L  +   +    I++Y+ +
Sbjct: 254 NWLSDSKYVYGGHQWLEEHLGFDDNANHIGGIDLYMPI 291



 Score = 49.1 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 7   QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPDETPAEKL 63
             E    A +   G  +    K  +    W DS+             YYD+      +  
Sbjct: 306 NVEPMLTATYTATG--KDADVKARDFFFKWADSQGFFNDTKPHRFFAYYDHERIGHNDFF 363

Query: 64  RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ-DSA 122
                VTV   F+   ++  + L E  GG YA+  A+   +     W + F   L  +  
Sbjct: 364 -YKIHVTVDREFS--TDNPYIKLEEFKGGYYAITKAKYSYNG--WAWGE-FLKWLSKNKE 417

Query: 123 YEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155
           +++     FE Y LN    D   ++ +++ ++ K
Sbjct: 418 FDLGNYWFFEEYKLNKPELDMDTEVVLHMPIKQK 451


>UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus
           flavefaciens FD-1 RepID=UPI0001C36EC6
          Length = 292

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 24/169 (14%)

Query: 1   MNYEIKQEEKRTV---AGFHLVGP---WEQTVKKGFEQ---------LMMWVDSKNIVPK 45
           MNY I ++   TV   A  H +        TV   + +         L+     +  +  
Sbjct: 128 MNYRIIEKPAFTVIEKAEVHRLDENDVVSSTVPDVWAKAGADGTIAQLVGMASDREFI-- 185

Query: 46  EWVAVYYDNPDET-PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQY-AVAVARVVG 103
               + Y N  ET   +                PE   G  ++ I    + AV       
Sbjct: 186 --YGICYGNGKETYDEDTFEYSIAAICAEDTVAPE---GFRISHIPARTWLAVECQGTCP 240

Query: 104 DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
           +   + W +   S    S Y    +   EVY +       +  E++V V
Sbjct: 241 ETVQQQWREMCASFFPSSGYTPTYEMDIEVYPSGDPSAPDYKFEIWVPV 289


>UniRef50_UPI0000587148 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
           purpuratus RepID=UPI0000587148
          Length = 202

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 24/139 (17%)

Query: 10  KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVV 69
           K  VA  +  GP+ +     F ++   V          + +YYD+P  TP  +LR     
Sbjct: 46  KLRVAYLYNTGPY-RNCGLLFGRVNS-VSPH----ARCMGIYYDDPKTTPESELRYMVGT 99

Query: 70  TVPGYFTLPEN-------SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL--LQD 120
            +  +    ++        +G  + E+     A+  A      F      FF        
Sbjct: 100 ILSEHDDAVDDELQKRCEDDGFRVIEVP----AIVDAIGTDFPFRWMLSVFFAIWRVYPA 155

Query: 121 -----SAYEMLPKPCFEVY 134
                    +  +PCFE+Y
Sbjct: 156 LNGKIKKEGLNARPCFEIY 174


>UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium
           RepID=A7GBT6_CLOBL
          Length = 289

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126
             + V  +  +PE   G++   I  G+Y V   +       + +   + + +  S  E+ 
Sbjct: 204 VGIEVTSFDYIPE---GMVAKVIPQGKYVVFTHKGSIHKLQETYEYIWGTWIPFSKVELD 260

Query: 127 PKPCFEVYLN--NGAEDGYWDIEMYVAVQ 153
            +  FE+Y     GA +   +I++Y+ ++
Sbjct: 261 MRDDFELYDEGFKGANNHLSEIDIYIPIK 289


>UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseudomonas fluorescens
           RepID=Q4K7X3_PSEF5
          Length = 162

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 8/132 (6%)

Query: 24  QTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSE 82
           Q +   +++ +  +      V ++   +   NPD            V +     LPE   
Sbjct: 35  QDIGLLWQRFVPHIGKVPGQVDRKTYGICC-NPDG--QGGFEYIAGVEISKLDDLPERYR 91

Query: 83  GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAED 141
            + +       YAV        D  + +   +N+ L  S  E    P FE Y  +   + 
Sbjct: 92  WIEVQP---QHYAVFEHGGALQDLPRTFDYIWNTWLPQSGREAADAPEFERYSADFNPQA 148

Query: 142 GYWDIEMYVAVQ 153
           G   +E+++ ++
Sbjct: 149 GTGVLEIWLPLK 160


>UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus
           halodurans RepID=Q9K6U1_BACHD
          Length = 300

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 65  CDTVVTVP-GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAY 123
               V +  G   +P+   G I  EI GG YA    +   +  +      + S L  S Y
Sbjct: 204 YMACVEIEAGDVNIPQ---GFIQKEIKGGTYASFHYKGAANQLSALTNYIYGSWLPSSQY 260

Query: 124 EMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155
           +       EVY      EDG   +E++  ++ +
Sbjct: 261 QSHFGVEIEVYDEREPKEDGEVAVEIWTPIKKR 293


>UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=Bacteria
           RepID=A9KRP2_CLOPH
          Length = 292

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 21/159 (13%)

Query: 1   MNYEIKQEEKRTVAGFHL---VGPWEQTVKKGFE---------QLMMWVDSKNIVPKEWV 48
           MNY+I Q     V G           + V + +E         + +  +   +  P  ++
Sbjct: 128 MNYQIVQFPAFKVVGITNRINTSEAFKIVPQIWENAWKDGTMNRFIELLKKTDYRPAGFL 187

Query: 49  AVYYDNPDETPAEKLRCDTVVTVPGYFTLPE-----NSEGVILTEITGGQYAVAVARVV- 102
            +  D       E    D ++ +  +  +PE       +G+         + V  A    
Sbjct: 188 GICADGKWGNSEE---MDYILAITNHVDVPECNYVSPPDGMKEFCYPASTWVVFDADGEL 244

Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAED 141
                K   QF++  L +S YE+   P  E Y+ N  ++
Sbjct: 245 PSAVQKIHKQFYSEWLPNSGYELADLPVIESYMQNNHQE 283


>UniRef50_C3L2H2 Bacterial transcription activator, effector binding protein n=3
           Tax=Clostridium botulinum RepID=C3L2H2_CLOB6
          Length = 168

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 81  SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN--NG 138
            EG++   I  G+Y V   +   +   + +     + +  S  E+  +  FE+Y     G
Sbjct: 94  PEGMVAKVIPQGKYVVFTHKGSVEKLQETYEYICGTWIPFSKVELDMRDDFELYDEGFKG 153

Query: 139 AEDGYWDIEMYVAVQ 153
           A +   +I++Y+ ++
Sbjct: 154 ANNHLSEIDIYIPIK 168


>UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium RepID=A5N0X9_CLOK5
          Length = 275

 Score = 62.6 bits (151), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 29/165 (17%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVY--------- 51
           N  +K+ E  TV            +     ++   V    + P    +++Y         
Sbjct: 123 NIILKEREPLTVLSIRDNIS-MDYIGSLIGKIYENVYKNGLKPIGNIMSIYYLQNEEEDF 181

Query: 52  -YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110
            +DN D         +  + V   F+    S  +    + GG +A         + ++ +
Sbjct: 182 NHDNADV--------EVCIPVDKEFS----SNEISTRIMEGGLHAYTTFVGPYSEISQAY 229

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAED-GYWDI--EMYVAV 152
                  ++ + Y++  +P FE Y+    E     D   E+Y  V
Sbjct: 230 GAMM-EWVKHNKYKIS-RPPFEKYIKGPEEGCNPQDFVTEVYFPV 272


>UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium
           BAL38 RepID=A3J103_9FLAO
          Length = 115

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
           DN D  P         + V  +  +P +   + + EI+ G YAV   +    + A  +  
Sbjct: 14  DNFDFNPNTPFVKWAAIAVSSFDFIPAD---MEILEISEGLYAVFNYKGNQSNAAAFFNL 70

Query: 113 FFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155
            +   L  S +E+  +P FE+    Y NN  +    + E+++ ++ K
Sbjct: 71  IYTEWLPKSDFELDNRPHFEILGTKYKNNAPDS---EEEIWIPIKRK 114


>UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6D8X3_9VIBR
          Length = 295

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 45/162 (27%), Gaps = 17/162 (10%)

Query: 3   YEIKQEEKRTVAGFHLVGP----------WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYY 52
             I+ + +    G    GP          + Q V   +          +I P  +     
Sbjct: 138 VRIESKPETQFWGV--YGPIDSIYAANPQFSQQVLDIWGTFTQIALQHSIAPNHFYYGIV 195

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
           D     P  +L        P +  + +    +    I    YAV         F K    
Sbjct: 196 DTVRVLPNSQLVYWAASDNPAFSQISQ----LEHVTIPAQMYAVITHVGPAATFPKTLEW 251

Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGA-EDGYWDIEMYVAVQ 153
              S L  S Y  L     E Y  +   E     +E ++ +Q
Sbjct: 252 VLQSWLPSSGYMGLEGFELECYPRDYQLESHEAKMEFWLPIQ 293


>UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=1 Tax=Moritella sp.
           PE36 RepID=A6FJ46_9GAMM
          Length = 312

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 88  EITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDI 146
           ++   +YAV           +     F+  + DS Y+ +     E+Y +N   ED    +
Sbjct: 243 DVPAQEYAVIPFTGPIKQLEQVLAWLFSHWIPDSNYDSVDGYELEIYPVNYDPEDSSSYM 302

Query: 147 EMYVAVQPK 155
           E ++ ++P+
Sbjct: 303 EYWLPIEPR 311


>UniRef50_D1AKN1 Transcription activator effector binding protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1AKN1_SEBTE
          Length = 155

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 1   MNYEIKQEEKRTVAG--FHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYY--DNP 55
           M   IK+  + T+ G     VGP     + K + +      +K     E +  Y   DN 
Sbjct: 1   MKAVIKELPEITIYGKKTKDVGPKTVGDLPKAWGEFFE--AAKGKFNPEHMNSYGLSDNM 58

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV--VGDDFAKPWYQF 113
             T  E       +    Y  +PE  E +    +   +YAV   +    GD+ +K     
Sbjct: 59  RMT-EELFDYTIGMEKESYTEIPEGFEEIK---LPANKYAVYTFKGKIEGDNISKFIGDI 114

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDG-YWDIEMYVAVQ 153
           +   + +   E +P+  FE Y     +D    ++++YV ++
Sbjct: 115 YMKWMPEEKLECIPEYSFEYYDERWIDDSDESELDIYVPIK 155


>UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W7J0_UNCMA
          Length = 153

 Score = 61.8 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 13/155 (8%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           EIK+   +         P E     + + +  ++ ++      P     V Y N D T  
Sbjct: 6   EIKELPVQQALSVRTRSPVENLPNVIGQTYGTIIQYMSELGEQPAGAPFVAYYNMDMTD- 64

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
                D  +  P    LP     V  + I GG+    +      + A  +      L+ +
Sbjct: 65  ----LDLEIGFPVNRELP-GKGVVQPSRIPGGRTGTCMYTGPYQEIAPAYDAL-AKLIAE 118

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIE--MYVAVQ 153
              E      +E+Y N+  +     ++  +   ++
Sbjct: 119 KGLEPTGVA-YEIYYNSPMDTEPSKLQTLILFPIK 152


>UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales
           RepID=B8FSY0_DESHD
          Length = 291

 Score = 61.8 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 39/173 (22%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQT------VKKGFEQLMMWVDS--KNIVPKEWVAVYYDNP 55
           +I +  +  VAG        +T      +++ +++           I       +     
Sbjct: 135 KIVELPEIKVAGLR-----GETTLRDNRLRELWDRANSLYIQIPNRIPNGRAFGIC---- 185

Query: 56  DETPAEKLRCDTVVTVPGYFTLPEN-----------SEGVILTEITGGQYAVAVARVVGD 104
                E    +T+ T+       E            +E  +   I GG+YAV   R    
Sbjct: 186 -----EACAENTLYTMNDDILFTEVAGIEVSSFAGLTEPFVQKIIPGGRYAVFTHRGTLG 240

Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVY----LNNGAEDGYWDIEMYVAVQ 153
              + +   + +    +  EM  +  FE+Y    L     D   ++++Y+ ++
Sbjct: 241 MLPQTFDYIWGTWFLTTKEEMDWREDFELYDERFLGYDHPDS--EVDLYIPIR 291


>UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes
           RepID=C1FU00_CLOBJ
          Length = 290

 Score = 61.8 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 26/165 (15%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-------QTVKKGFEQ------LMMWVDSKNIVPKEW 47
           MNY I++++   + G     P E       +TV K +        +       + +P   
Sbjct: 134 MNYRIEKKDSFRIVGISE--PLETEMEKNFETVPKMWGTAAMNGTIPRLAAMMDGIPMGL 191

Query: 48  VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107
           + V          +  R    V             G+    +    +A+   +       
Sbjct: 192 LGVS----SCNNLDNWRYYIAVASSQPIE-----NGLEEYIVPSSLWAIFSGKGTAKSMQ 242

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
           +   +     L  S YE    P  EVYL    ED  +++  ++ V
Sbjct: 243 ELEKRIITEWLPTSGYEYGNAPDIEVYLKADPEDTEYEV--WIPV 285


>UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus
           halodurans RepID=Q9K766_BACHD
          Length = 297

 Score = 61.8 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 21/170 (12%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQ-LMMWVD---SKNIVPKEWVAVY 51
           M  +   +    + G+ L      G   + + + ++  L   +       +     + + 
Sbjct: 130 MEPKFVTKPAFHIIGYELKTKNADGQNNKDIPEFWQHYLKNKLGCTIPNPLHKHVELGIC 189

Query: 52  YD-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD----- 105
            + NP+     +      + V      PE   G++       +YAV       ++     
Sbjct: 190 TEFNPET---GEFVYVIGMEVEKGTKAPE---GMVYKSFPELEYAVFTTPKANEESFTSS 243

Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
               W   F      S YE      FE+Y          ++++Y+ V+ +
Sbjct: 244 IQSTWNYIFTEWFPQSDYEHNGVVEFELYDERCHGTENIEMDIYIPVKKR 293


>UniRef50_B8GJM5 Transcription activator effector binding n=1 Tax=Methanosphaerula
           palustris E1-9c RepID=B8GJM5_METPE
          Length = 120

 Score = 61.5 bits (148), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 43  VPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV 102
           + ++ + +Y D     P  K R    V V            + +  I GG +   V +  
Sbjct: 17  LSQKALRLYDDRGLLVPESKDRITGCVAVTDPA--------IEVKTIPGGSHLTLVYQGA 68

Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
                + W + F    ++  Y +   P  E+YLN+ A+    D+  E+++ + P
Sbjct: 69  YPGLHEAWSRIF-VYQEEKGYRIA-GPGRELYLNDPAQVPEEDLLTELHLPIIP 120


>UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales RepID=C5EUL1_9FIRM
          Length = 266

 Score = 61.5 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 2   NYEIKQEEKRTVAGFHL---VGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD---NP 55
              +K+  ++ +A       V  +     K +E++         V    +A+Y+D   +P
Sbjct: 123 EIVVKEAGEQVLATHRQKMSVEEFGTYYGKIYEKI---AREHLEVNGIVMAIYHDQEFDP 179

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
             +  E       +T                  + G   A  + +         +     
Sbjct: 180 AFSDIE---LGVGITERDKADF----------ILPGHLCATTIHKGAYSGLPDAYGAI-V 225

Query: 116 SLLQDSAYEMLPKPCFEVYLN---NGAEDGYWDIEMYVAVQ 153
           + +  + Y+M   P +E+YL    +      W  E++  V+
Sbjct: 226 AWINANGYKMDGMP-YEIYLKTHFDKLPPEEWVTEIFFPVR 265


>UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales
           RepID=C6CRA3_PAESJ
          Length = 297

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 72  PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCF 131
               +  E  EG    E+  G+YA      + +     W   + + L +S YE    P F
Sbjct: 216 EEVTSFAEVEEGFACLELPSGKYAAFRNGTMPEIGQNAWKYIYGTWLPNSNYERGEGPDF 275

Query: 132 EV--YLNNGAEDGYWDIEMYVAVQ 153
           EV   LN+  +     + +Y+ ++
Sbjct: 276 EVTDVLNSTPQ--KISMTIYIPIR 297


>UniRef50_A3I8G8 Transcriptional regulator, MerR family protein n=3 Tax=Firmicutes
           RepID=A3I8G8_9BACI
          Length = 281

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 60/163 (36%), Gaps = 25/163 (15%)

Query: 3   YEIKQEEKRTVAGFHL--VGP-WEQTVKKGFEQLMM-WVDSKNIVPKEWVAVYYD---NP 55
            ++ + +++T+        G  +++     F+ L       +  +  + + +Y+    +P
Sbjct: 134 IKLVETKQQTILTRRQLLTGEDYKEGYHHFFQTLYEKIAKEQYTLLGKPMTIYHSAEYDP 193

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                E             F +P         +  GG  A +V +   ++ +  +     
Sbjct: 194 LGNDTE-------------FAIPIKESVKGTRDFPGGLCAKSVLKGAYNELSAIYANLL- 239

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAE---DGYWDIEMYVAVQPK 155
             ++   YE++  P +E+Y+ +  +      W  E+Y  ++ K
Sbjct: 240 EWVKKEGYELVDSP-YEIYITDPNQEQHTEDWLTEVYFPIKKK 281


>UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=Methanosarcina
           RepID=Q465L3_METBF
          Length = 287

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDS------KNIVPKEWVAVYYDNPDET 58
           IK+  +  V      G +  T+ K   ++   V S      +  V    + + +D     
Sbjct: 135 IKEIPEMRVISKREKGTFVATIGKLIGEICTSVGSPENQRNRVKVTGPVMFLCHDE---- 190

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             +++  D  + +P    +      + +  +   +    V R         + Q F+   
Sbjct: 191 EYKEIGADIEIALPVSGRISVEDPKMEVKTLPAIRAISVVYRGPYPGVEAGYNQIFSYAR 250

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
           +++   +   P  E+Y N+  E    ++  E+ V ++ K
Sbjct: 251 ENNLETL--SPDRELYFNSPEEVPEEELMTEIQVPIREK 287


>UniRef50_B5JDT8 Bacterial transcription activator, effector binding domain protein
           n=1 Tax=Verrucomicrobiae bacterium DG1235
           RepID=B5JDT8_9BACT
          Length = 268

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
             E K+     VAG+ + G +   V KGF+ L         +  + + +YYD   E   +
Sbjct: 123 EVEEKELPSMLVAGYRMCGRYSD-VGKGFKVLGRKAGRH--LKGKSMCLYYD--GEYRED 177

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
               +    V          E +   E++GG     + +   +  ++ + + F + ++  
Sbjct: 178 DANFEPCFEVKREVE----DEDLQCRELSGGTALTLLHKGPYERLSESYAKLFAA-VKRG 232

Query: 122 AYEMLPKPCFEVYLNNG 138
              +L  P  EVY    
Sbjct: 233 GCRVL-CPSREVYHKGP 248


>UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria
           RepID=A6UD97_SINMW
          Length = 279

 Score = 60.7 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 16/158 (10%)

Query: 4   EIKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMW----VDSKNIVPKEWVAVYYDNPDE 57
             ++     +AG      +   + +   +++   +       +         V   +   
Sbjct: 129 RFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFGNIPGQRG---NTAYGVCTQSDG- 184

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
             A + R      +     LP    G     +   +YA+ V R    + A   +  F + 
Sbjct: 185 -EAGRFRYMAAAEIRDNEALP---AGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTW 240

Query: 118 LQDSAYEMLPKP-CFEVYLNN-GAEDGYWDIEMYVAVQ 153
             +S Y     P   E Y        G   +EM+V ++
Sbjct: 241 FPESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLK 278


>UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croceibacter atlanticus
           HTCC2559 RepID=A3U5E2_9FLAO
          Length = 165

 Score = 60.7 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 16/165 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDN--PDE 57
           M   I+  +   + G H        T ++ +++ M     K+I+ +    +Y     P  
Sbjct: 6   MTPRIETLKPTVLVGMHNTMSIAANTTQQLWQRFMP--KHKSILNRGDAILYSAEVYPSV 63

Query: 58  ------TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWY 111
                  P  + +    V V    ++PE  + +++     G YAV     +  D  K + 
Sbjct: 64  DYFKSYNPEAEFQKWAAVAVHSSQSIPETMDMLMVQ----GDYAVFTYTGLASDVYKAYQ 119

Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155
             ++  L  S Y++  +P F    +     D     E+++ +Q K
Sbjct: 120 FIYSKWLPASKYKLSNRPHFAKMDSTYNPNDPSSQEELWIPIQLK 164


>UniRef50_A6LWV9 Transcription activator, effector binding n=1 Tax=Clostridium
           beijerinckii NCIMB 8052 RepID=A6LWV9_CLOB8
          Length = 272

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETP 59
           +  E+K  +   V            +     ++   +   ++ P    + +Y+D  +   
Sbjct: 122 LKVELKDRKSLIVIS-RRTITSMSNISSVIGKVFEDIFKMDLKPSGPVMTIYHDKQEF-D 179

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E   C+  V V       +N     + E+ GG  A            + + +     ++
Sbjct: 180 VENADCEVCVPVNSRVNAEKNEN---IKELAGGLVASTTFVGPYSRLGEAYAKV-VKWIE 235

Query: 120 DSAYEMLPKPCFEVYLNNG-AEDGYWDI--EMYVAV 152
           D+ YE    P F++YLN   +     +   E+   +
Sbjct: 236 DNGYEYAGAP-FDIYLNGPQSVKSPEEFVTEVCFPI 270


>UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus
           coahuilensis m4-4 RepID=UPI0001850B59
          Length = 159

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 20/164 (12%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51
           MNY I +++   V G   V     G   Q +   ++++      + I      +E+V V 
Sbjct: 1   MNYRIVEKDAFQVIGVSKVVSTVNGENHQAIPTFWDEVNESGVDERIAKLAGNQEYVGVC 60

Query: 52  --YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108
             +D+P+    E+             T  E    +   EI    +AV  +          
Sbjct: 61  MDFDHPN----ERFTYFIGAEDIANVTQTE----LEKREIPRNTWAVFESVGPMPHAIQA 112

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            W + ++     + Y+    P FE+YL        +  E+++ +
Sbjct: 113 VWQRIYSEWFPSTGYKHAGGPEFELYLPGDVTQEDYRCEVWIPI 156


>UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=Salinispora
           RepID=A4XAI8_SALTO
          Length = 274

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 11/146 (7%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYD--NPDETPA 60
           E++     ++     +      + +GF  ++  + +       +   VY+D  +   T  
Sbjct: 124 EVETVPVASLTLHTSLDAIGADMGRGFGTVVDAIGNAGTEANGKPFVVYHDVIDEQTTGD 183

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
                +  + VP    LP  S  V   E+ GG  A  V R    + +  ++      ++ 
Sbjct: 184 ----IEICIPVPAGTVLP--SGPVRYRELRGGPIASTVHRGPYQEISPAYHVVTG-WIEQ 236

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI 146
                   P  EVYLN+       ++
Sbjct: 237 EGVHPA-GPPREVYLNDPQTVSPAEL 261


>UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei
           subsp. wolfei str. Goettingen RepID=Q0AX83_SYNWW
          Length = 152

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 11/147 (7%)

Query: 3   YEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59
           + +++++ +          V    Q + K +  +M ++    + P     V Y N     
Sbjct: 5   FVVEEKKAQPTISVRTRTAVENLPQVLGKAYGAIMNYLFEIGVQPAGEPYVGYFN---MD 61

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            + L  +  + V         ++ +  +EI  G+    +     +     +     + + 
Sbjct: 62  MQDLDLECGLPVAQPVV---GNDKLKPSEIPAGKQVSCLYTGPYNQIEPAYNAIM-AWIP 117

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146
            + Y      C+E YLN+ AE    ++
Sbjct: 118 ANGYTPTGV-CYEFYLNDPAETPENEL 143


>UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RJ15_CLOCL
          Length = 290

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGF-----EQLMMWVDSKNIVPKEWV--AV 50
           MNY I +E+  T+ G  L    E+   T+   +     E++   +       +  +  +V
Sbjct: 134 MNYRIVEEDALTLFGISLTTRREESFETIPDFWNKCEEERITYKIVEAGHGNERTLLKSV 193

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAV--AVARVVGDDFAK 108
            YD       E ++    + +P        S+   +  I    +AV   V     D    
Sbjct: 194 LYD----MDNEMMKYMIGLDMPEEGV----SDEFEVVTIPAKTWAVFPLVLEKPEDSITS 245

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            W + F     +S YE+      E    +  +DG   +E +V V
Sbjct: 246 IWKRIFTEWFPNSGYELDEGSWQER--CHWRDDGKMIVEAWVPV 287


>UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax=Geobacter sp.
           FRC-32 RepID=B9M8P4_GEOSF
          Length = 221

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 73  GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFE 132
              +L E    +    + GG+YAV          A  +       L  S+Y +  +  FE
Sbjct: 139 EVSSLEEIPTSMETYLLQGGKYAVFTHHGPASAAAGTFQYILGEWLPKSSYNLDDREHFE 198

Query: 133 V----YLNNGAEDGYWDIEMYVAV 152
           V    Y      D     E++V +
Sbjct: 199 VLPEGY---NPIDPEAKEEIWVPI 219


>UniRef50_B8I6Y6 Transcriptional regulator, AraC family n=2 Tax=Clostridium
           RepID=B8I6Y6_CLOCE
          Length = 297

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 11/134 (8%)

Query: 26  VKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEG 83
           + + +EQ+  W+          +   +  D P+       R     T   Y      +  
Sbjct: 165 INRAYEQIFTWLKENKKFTSDTKICGITMDTPEVQNLSSCRYYACATAESYIHDEHLAYR 224

Query: 84  VILTEITGGQYAVAVARVVGDDFAKPW----YQFFNSLLQDSAYEMLPKPCFEVYLNNGA 139
           V  T    G Y          DFA  +       +   +    +    +P  E Y     
Sbjct: 225 VFQT---SGNYICCKINRCIKDFAACFFKHMDYLYGFYMVSHKFSPDNRPFVEFY--ERM 279

Query: 140 EDGYWDIEMYVAVQ 153
            DG   I   V V+
Sbjct: 280 PDGDIYIHFCVPVK 293


>UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2
          Length = 290

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 73  GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFE 132
             F L  N   V +  I  G+YA        +         + S L +S YE    P FE
Sbjct: 209 EDFDLELNEGFVKI-VIPEGKYAEFKVSGSHEMVQNTRRYIYGSWLPNSNYERTSGPDFE 267

Query: 133 ---VYLNNGAEDGYWDIEMYVAVQ 153
              V  +NG  D    +++Y+ ++
Sbjct: 268 ITDVLHSNGPNDIK--MKIYIPIK 289


>UniRef50_D0NCH1 Putative uncharacterized protein n=1 Tax=Phytophthora infestans
           T30-4 RepID=D0NCH1_PHYIN
          Length = 157

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 11/155 (7%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-PKEWVAV-YYDNPDETPAE 61
            IK      V     V P  +     + ++  +  + N+V      A+ Y ++  +T  E
Sbjct: 7   TIKSLAAVRVLSLRSVLPNYRAQGDLWAKIFAFAKTHNVVVAGPTFAINYTEDGRQTDVE 66

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
               +  +       +PE +   +       + AV V     + +   +  FF   ++  
Sbjct: 67  ---VEVCLPTAKDAYVPEEAPFSVHEVSAVDRGAVMVYVGPCEGYVSAYVTFFG-WIRSE 122

Query: 122 AYEMLPKPCFEVYLNNGAEDGYWD----IEMYVAV 152
                  P  EVY+     +   D     E+ + V
Sbjct: 123 KLTPA-GPSREVYVKRPTGNEEDDQGSVTEIQLPV 156


>UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2W154_NAEGR
          Length = 174

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 79  ENSEGV--ILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136
            N EG+   L+E+  G+YA        +  +  W +     L  S Y     PC+E Y+N
Sbjct: 97  PNDEGLKAQLSEMPSGEYAYFRYVGPYEGLSSVWNKLMKEKL--SGYVHTE-PCWEEYIN 153

Query: 137 NGAEDGYWDI--EMYVAVQ 153
           +  +    ++  ++Y  ++
Sbjct: 154 DCTQVKKEELITDLYWKLE 172


>UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes
           RepID=B7HW35_BACC7
          Length = 281

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMM-WV-DSKNIVPKEWVAVYYDNPDE 57
           M Y I+  +        +VG  +       F+++   W    K+   +E + + +++P  
Sbjct: 128 MEYRIENLD----FELRIVGKSKSVKTSSAFKKIPTLWNNAKKDGFMQELIDMSWEDPKC 183

Query: 58  TPAEK---LRCDTVVT---------VPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD 105
                      D  +T         V     +P + E +    I    +AV        +
Sbjct: 184 KLESLLGVCGKDAAITDEEFSYFMGVRYDGEVPTDMETL---VIPVSTWAVF------PN 234

Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
               W + ++  +  S YE+   PC E Y            E++V V
Sbjct: 235 IVDAWKRLYSEWVPTSKYELANLPCIECYY---GPKHKPRHELWVPV 278


>UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi
           DSM 13479 RepID=UPI0001C357C1
          Length = 307

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 3   YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEW-VAV----YYDN 54
             +++ ++ +V G+     G +   + + + +     D       KE+ + +    YY  
Sbjct: 152 VTMREAKELSVVGYCSSTKGGFA-GIGRCWRRFHAKKDRISGCTNKEFLIGINDYSYY-- 208

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-FAKPWYQF 113
           P +   +  R      V   +T P+   G+    +  G+  V   R   +D         
Sbjct: 209 PCKGLDQVFRYIAGAEVMQEYTAPK---GMQKFTLPAGRCVVFSFRGRNEDSLQPVVEYI 265

Query: 114 FNSLLQDSAYEMLP--KPCFEVYLNNGAEDGYWDIEMYVAV 152
           +     DS        +  F  Y     E G  +I+++V V
Sbjct: 266 YGEWFPDSTCRFDEDRRYDFARYGEQLDEHGESEIQLWVPV 306


>UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6Q1C5_9CLOT
          Length = 278

 Score = 58.8 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 17/161 (10%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKN-IVPKEWVAVYYD---NPD 56
             EIK+     VA     GP   +     + +L+  V+  N  + K  +AVYYD   + +
Sbjct: 126 KIEIKEIPVSYVAYIRSKGPCTIEEFAVRYCKLISLVERNNFHIIKNAMAVYYDNCIDFE 185

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAV-AVARVVGDDFAKPWYQFFN 115
           E   E    +  + +     +    +G++     GG  AV AV     D+    + + + 
Sbjct: 186 EKEKEDYDIEVCIVISEEREI----DGLVRKF--GGFKAVTAVHYGSYDNMIDSYRKLY- 238

Query: 116 SLLQDSAYEMLPKPCFEVYL---NNGAEDGYWDIEMYVAVQ 153
             + ++ YE+  +P  + YL    N  ++  +  E+ + ++
Sbjct: 239 KYIYENGYEICGEP-IDNYLVDIMNTVDEENYVTELIIPIR 278


>UniRef50_C5RJ11 Transcriptional regulator, MerR family n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RJ11_CLOCL
          Length = 311

 Score = 58.4 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 19/162 (11%)

Query: 2   NYEIKQEEKRTVAGFHLVG--PWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDE 57
           N          VA    VG  P ++ +      ++ WV+   ++    +        P E
Sbjct: 161 NVRFITLPPMRVAYNIAVGISPEDEAIAP----VVKWVEESKLMGITRLLGGNVKPFPSE 216

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           +  E         +P    +P     +    + GG YAV       DD    W      L
Sbjct: 217 SSPE-YGYGMCAAIPESVEIP---AHLKEMRLPGGLYAV---MPSSDDIYGSWQLLMKQL 269

Query: 118 LQDSAYEML-PKPCFEVYLNNGAEDG---YWDIEMYVAVQPK 155
            +++ Y+    + CFE ++ N   DG    + + +   V+ +
Sbjct: 270 EENNEYKPDSSRLCFEEHIRNDNADGQGSQFILNLLEPVKKR 311


>UniRef50_D2R723 Transcription activator effector binding protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R723_9PLAN
          Length = 155

 Score = 58.0 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 13/153 (8%)

Query: 6   KQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEK 62
           +       AG       E    + + + Q    +      V +    +            
Sbjct: 8   RDVPAMRWAGIMRRYSMESRCEIPQLWGQFAPHIGQIPGQVGRRSYGIS----VLVSGTD 63

Query: 63  LRCD--TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
              D    V V     +P   +G+    I   ++AV +      +        +   L  
Sbjct: 64  CDFDYMAAVEVHSSAEIP---DGMAEFAIPPQKFAVLLHTGHVSELPGFIDAIYRQWLPT 120

Query: 121 SAYEMLPKPCFEVYLNNGA-EDGYWDIEMYVAV 152
           S     P PC E Y      E     +E++V +
Sbjct: 121 SGLRTAPGPCIECYTEEFCGEKMIGGMEIWVPI 153


>UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 Tax=Clostridium difficile
           QCD-32g58 RepID=UPI00006DCB74
          Length = 167

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 15/162 (9%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQL--MMWVDSKNIVPKEWVAVYYDNPDET 58
              IK+ EK  V G       E  ++   +E+   +  +    +  K    +     +  
Sbjct: 11  KPVIKEIEKIKVIGIKDKVILENNSLPDLWEKFRKVHHIVPNTLPSKRVFGIC----EAI 66

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVIL-----TEITGGQYAVAVARVVGDDFAKPWYQF 113
               L  ++ +       L  NS  VI        I  G+YA+       D+  K +   
Sbjct: 67  SEIHLVSES-MEFNEIIGLEVNSYDVIPNSFVSKTIKEGKYAIFTHTGSLDNLDKTYEYI 125

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
           + +    S  E+  +  FEVY     G  +    I++Y+ ++
Sbjct: 126 WGTWFLSSKEELDIRDDFEVYDERFLGPSNVNSQIDIYIPIK 167


>UniRef50_B0MJ37 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MJ37_9FIRM
          Length = 121

 Score = 58.0 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           + +R   ++  P                ++ G+YAV        +    +   +      
Sbjct: 28  DDVRFSVMIGSPMEAFSTVPKS-CEKKTLSKGKYAVFTHTGSLQNLVLSYDYIYGVWAMS 86

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153
           S +++  +  +E+Y     E    D  + +Y+ ++
Sbjct: 87  SKFQLDNRESYEIYDGQVREYTDADNYVLIYIPIK 121


>UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus
           RepID=Q5WGK8_BACSK
          Length = 280

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 1   MNYEIKQEEKRTVAG--FHLV---GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51
           M+Y+I +++  TV G         G   + +   + +      SK +     P   + + 
Sbjct: 122 MDYKIVEKDAFTVVGKSIRTTTIGGENNRKIAAFWNESNRNGLSKQLAKNCGPLGLLGIC 181

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110
            D       +K + +    +       +        +I    +A+        +   K W
Sbjct: 182 IDF------DKQQENLTYLIAAEKNSDQIPVDWETRQIPAATWAIFPVHGAMPNAMPKVW 235

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153
            + F+     + YE    P  EVY+++          E++V V+
Sbjct: 236 ERIFSEWFPATGYEHSGGPEMEVYVSDADPYSKDYYSEIWVPVK 279


>UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL
          Length = 290

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 25/170 (14%)

Query: 2   NYEIKQEEKRTVAGF--------HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--- 50
              I + E   V G          L   + Q V + + +L   V+  +    +++ V   
Sbjct: 124 EVRIDEREPFLVKGMTSEISGLFSLTQDFAQKVPQLWSRLEGEVEIPDANMLQFIGVVDL 183

Query: 51  ---YYDNPDETPAEKLRCDTVVTVPGYFTLPEN----SEGVILTEITGGQYAVAVARVVG 103
               +D         +     V +    ++P+     S+ + +  I    YAV   R   
Sbjct: 184 TQSCFD------GTNIYYWAGVELHDEISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPI 237

Query: 104 DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAV 152
           +        F  + L +S Y  +     E+Y           ++E +V +
Sbjct: 238 EHLPHTLSWFVLNWLPNSGYRGVDGYELEMYPFGYQAHASDAEMEYWVPI 287


>UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella
           piezotolerans WP3 RepID=B8CLS6_SHEPW
          Length = 303

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 9/141 (6%)

Query: 22  WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDE-TPAEKLRCDTVVTVPGY----FT 76
           +   V   + +L   +D    +    + V  D     T  + +R    + +         
Sbjct: 165 FSSIVPDTWLRLFDIIDGVLPLAGNMLGVV-DTLSLKTEQQSIRYWAGLELDAEQRQSLQ 223

Query: 77  LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVY-- 134
                E +    I   +YAV       ++F++         L +S +  L     E Y  
Sbjct: 224 TLLTEEKLCSLTIPSQEYAVVAYSGTVNEFSQLVEWLICDWLPESGFVSLDGYELESYGK 283

Query: 135 LNNGAEDGYWDIEMYVAVQPK 155
           + +   D    +E ++ ++ K
Sbjct: 284 ITSTITDLKH-MEYWLPIKAK 303


>UniRef50_C3JZ42 Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas
           fluorescens SBW25 RepID=C3JZ42_PSEFS
          Length = 170

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 16/158 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT----VKKGFEQLMM-WVDSKNIVPKEWVAVYYDNP 55
           +   ++  +   +AG    G + +     + K +E       D K  V      V + NP
Sbjct: 19  LEPRMEAGKALVIAGV--QGRYSKATVGDIPKLWELFDTCIKDIKKRVGGVTYGVCH-NP 75

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                 +      V VP    +P N E +    I    YAV           + + +   
Sbjct: 76  K---HGEFDYMAGVEVPTKGDVPSNFESIE---IPPLNYAVFPHYGPVQALEQTYERIMF 129

Query: 116 SLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAV 152
             L  S Y+++    FE Y  +     G   +E+++ V
Sbjct: 130 EWLPHSGYKVMGAD-FERYSADFDGRKGTGTVEIWLPV 166


>UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 Tax=Fusobacterium ulcerans
           ATCC 49185 RepID=UPI0001BC4194
          Length = 277

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 79  ENSEGVILTEITGGQYAVAVARVVG-DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN 137
           E  +G+   +I GG +AV        ++  K + +F+   L  S Y        E+Y   
Sbjct: 206 EGEDGMERHKIPGGTWAVFRCSSPFLENSQKIYRRFYTEWLPHSGYTYGETADIEIY--- 262

Query: 138 GAEDGYWDIEMYVAVQ 153
             +    D+E++ +++
Sbjct: 263 -PDSNEKDMEIWFSIK 277


>UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aeromonas
           RepID=A0KIR8_AERHH
          Length = 155

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 10/156 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
             I+      + G      +        +            + +    V         A 
Sbjct: 5   IRIETGLPMLLGGLRRHHAFAHADFGGQWRDFCALGPLPGQLGEHAYGVI----CGVTAT 60

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           +      V V     LP+    +    I    YAV + +         W Q     L  S
Sbjct: 61  ECEYLCAVEVAALEVLPKT---LGRMRIEPQTYAVFLHQGHVSAMPHTWQQAL-DWLAQS 116

Query: 122 AYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPKH 156
           AY+   KP FE Y      E G  ++E+++AV P+ 
Sbjct: 117 AYQSAHKPDFERYGAAFDPETGSGEVELWLAVLPRQ 152


>UniRef50_C2AQJ3 Predicted transcriptional regulator n=1 Tax=Tsukamurella
           paurometabola DSM 20162 RepID=C2AQJ3_TSUPA
          Length = 281

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA--------VYYDN 54
             I    +R      +VGP+ + + +  E +   V  + +               VY D+
Sbjct: 204 VRILNLPERRAVVAAVVGPYHEAIPRAHELIGAAVAEQGLTLTRTTGDPATHHFNVYLDD 263

Query: 55  PDETPAEKLRCDTVVTV 71
           P   P E+LR    V V
Sbjct: 264 PCAVPPERLRTKVYVPV 280



 Score = 40.3 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 14/153 (9%)

Query: 9   EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA-VYYDNPDETPAEKLRCDT 67
             RTVA               +E+L   +  + IVP      + +D+  E     +    
Sbjct: 133 PARTVASLRGTVADYAAEGTLWERLFPALQEQGIVPGALGGCIEHDD--EFREHDVDESV 190

Query: 68  VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM-- 125
            V VP           V +  +   +  VA       +     ++   + + +    +  
Sbjct: 191 FVDVPAG---TTAHAPVRILNLPERRAVVAAVVGPYHEAIPRAHELIGAAVAEQGLTLTR 247

Query: 126 -LPKPC---FEVYLNNGAEDGYWDIE--MYVAV 152
               P    F VYL++        +   +YV V
Sbjct: 248 TTGDPATHHFNVYLDDPCAVPPERLRTKVYVPV 280


>UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staphylococcus
           RepID=B9CPS5_STACP
          Length = 165

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 1   MNYEIKQEEKRTVAG-FHL---VGPWEQTVKKGFEQLMMWVDSKNIVPKE------WVAV 50
           M+Y I+  E   V G +      G  +  +   +E +      + ++ K        + V
Sbjct: 11  MDYRIENIESTKVIGAYRHYKSGGHAQSNIPDFWEDVHTMKLDERLLQKSDNQLNGLLGV 70

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
                   P E    D  + V    +  +  +G+    + GG+Y V  A+        + 
Sbjct: 71  CL------PKEDRTMDYAIGV---TSTEDPHDGLETFNLEGGKYLVVEAKGPVPKSVQQT 121

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
                + L+     E+   P FE+Y     +   +  E+++ +Q
Sbjct: 122 MNDIHHELIPRENIEIKQAPFFELYGPGDTQSESYVTEIWMPIQ 165


>UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria
           RepID=A9CGS4_AGRT5
          Length = 274

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A        V      T     + +    +    YAV        D  +  Y  +N  L
Sbjct: 184 EAGNCTYLAGV---KALTKTPGMDYIE---LPAQSYAVFTHNGHISDLPRTVYTIWNKAL 237

Query: 119 QDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAV 152
            ++  +    P FE Y      E G   +E+++ V
Sbjct: 238 PEAGLKTADSPDFERYDQRFNPETGRGSVEIWIPV 272


>UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria
           RepID=A0KJN2_AERHH
          Length = 325

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           E L       +    +LP    G+    +    YAV           +    F    L  
Sbjct: 233 ESLPYWAGSVMEEGASLP---AGLARLPVPAQTYAVLSHVGPVSQLGQTLNWFIQHWLPS 289

Query: 121 SAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAVQP 154
           S Y  L     E Y  +   +     +E ++ V P
Sbjct: 290 SGYRGLDGFELERYAPDFDGNQPDARMEYWLPVAP 324


>UniRef50_C0EVN7 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM
           3353 RepID=C0EVN7_9FIRM
          Length = 229

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 87  TEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLP-KPCFEVYLNNGAEDGYWD 145
               GG+YA    +         + + F   L  +  ++   +P F++Y   G E+GY +
Sbjct: 163 KHFQGGKYAAYHFKGFPQFLFMVYQEIFCRWLSKTGNQLDERRPIFDIYRLVG-ENGYME 221

Query: 146 IEMYVAVQ 153
           I++   ++
Sbjct: 222 IDICFPLK 229


>UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus
           ATCC BAA-450 RepID=C9NSU9_9VIBR
          Length = 310

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 65  CDTVVTVPGYFTLPEN----SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
               V +     LP+     S  +    +    YAV           K    F  + L +
Sbjct: 213 YWAGVELTDDLLLPQLPSAISSELSTLVVPAQTYAVVKHCGPVVHLPKTLEWFLLNWLPN 272

Query: 121 SAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQ 153
           S Y  +     E Y  N    D    +E ++ V+
Sbjct: 273 SGYRGIDGYELECYPANYNQHDTDAVMEYWIPVE 306


>UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas
           RepID=B8L7S8_9GAMM
          Length = 285

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 16/158 (10%)

Query: 4   EIKQEEKRTVAGF--HLVGPWEQTVKKGFEQL-MMWVDSKNIVPKEWVAVYYDNPDETPA 60
            +       VAG            +   + QL   W     I       V  ++      
Sbjct: 138 RLLDTPAFQVAGIGMRHTRDSGGAIPGQWAQLNREWPAPAPIS----FGVCCNS-----D 188

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++   D +  +P    L           +   +Y VA            W+   +  L  
Sbjct: 189 DEGGFDYIAALPAS-ALSTVPAHWQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYLPG 247

Query: 121 SAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAV--QPK 155
           +   +   P  E Y     E  G   +E+++ V  +P+
Sbjct: 248 TGLSLADAPDLERYDTRFDEHTGNGGVEIWLPVDQRPR 285


>UniRef50_Q1IWD1 Transcriptional regulator, MerR family n=1 Tax=Deinococcus
           geothermalis DSM 11300 RepID=Q1IWD1_DEIGD
          Length = 265

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 1   MNYEIKQEEKRTVAGFH--LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58
           MNY I+    R +      L  P  + + +   +LM+   ++           ++N D+ 
Sbjct: 112 MNYRIEHLPARQILSIRTRLQPPHYEVIPEALRELMLHAKAQGYPVDAPSFFVHNNDDQG 171

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
               L  +  + V G          + +    GG+  +       D     +       L
Sbjct: 172 EGGSL-VEIGLPVAGEVA---PQGRIEVRTFAGGRALIGRFVGPYDKTGSAYSAVVEEAL 227


>UniRef50_B8FZA0 Transcriptional regulator, MerR family n=2 Tax=Desulfitobacterium
           hafniense RepID=B8FZA0_DESHD
          Length = 329

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 31/176 (17%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDETP 59
           +  I      TVA     G  ++ V      +  ++    +     ++  + ++NP    
Sbjct: 163 DIRILYLPPMTVASCQSTGDNQEEVVGA--AISTFIKESGLGESKPDFRRIGFNNPASEQ 220

Query: 60  A-EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           +   L  +  V++PG   +P     ++  +  GG YA     +   +F + W +     +
Sbjct: 221 SGGSLGYEAWVSIPGDMEVP---APLVKKQFLGGLYA--AHMIAFGEFQE-WGRL-WQWV 273

Query: 119 QDSAY------------EMLPKPCFEVYLN------NGAEDGYWDIEMYVAVQPKH 156
            D+              +    P  E  LN      + +  G   +++ V ++PK 
Sbjct: 274 MDNGEYDVDFSPRTDPADPRADPSLEEQLNAIHHLEDASPFGTQ-LDLLVPIKPKQ 328


>UniRef50_B9YCK8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9YCK8_9FIRM
          Length = 270

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 19/157 (12%)

Query: 3   YEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDET 58
            E+ +    T+         G + Q  ++ F  L+  +  + + +    + +++D+ + +
Sbjct: 126 VELTEMPAMTLLSRRLKVRGGDFPQAYQQSFGTLLDKLQKQRLTMDGSPMTLFHDD-EFS 184

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW-YQFFNSL 117
                       +   F +P             G     V      DF   +  Q     
Sbjct: 185 EEG---------LDTEFAIPVRETTEETRLFQPGLCLKTVVSGPDADFPAVYARQI--QW 233

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153
            +   Y       FEVY ++  +D      E+Y  V+
Sbjct: 234 AEAEGYHNADA-LFEVYRSDPRDDPQAFYAEVYYPVR 269


>UniRef50_A2DA81 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis
           RepID=A2DA81_TRIVA
          Length = 197

 Score = 56.1 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFE----QLMMWVDSKNIVPKEWVAVYYDNPDET 58
            + +   K  V     VGP+ Q   K +      L    D K+        +YYD P   
Sbjct: 31  VKEEYISKFKVVYTTFVGPYSQAY-KMYAVVESALSKANDGKDFSKVPCFGIYYDKPKSV 89

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVA 99
           P EKLR      V     +P + +G +   EI  G   V+  
Sbjct: 90  PDEKLRSVVGKIVEDNVEIPNSDDGSIKSEEIELGDVVVSHF 131


>UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID=Q9K6U2_BACHD
          Length = 160

 Score = 56.1 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 16/161 (9%)

Query: 3   YEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           + I ++ +R + G  L GP+     +   +E     V   + + ++     +  D     
Sbjct: 9   FTIVEQNERKMIGLKLEGPYTRMNEIGMLWETFNQRVSEIDHLVQDDLSFGIVQDR---- 64

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
                     V V  +  +PE    +I   +   +YAV   +   D F++       S L
Sbjct: 65  -ERDFTYYAAVEVSSFTKVPEGMATII---LPACRYAVFTHKGPQDKFSETVVAALKS-L 119

Query: 119 QDSAYEML-PKPCFEVY--LNNGAEDGYWDIEMYVAVQPKH 156
           ++S YE        E Y       E    + ++Y  ++   
Sbjct: 120 KESGYEKDSDNYWLEGYDDHRFSPELDNSECDIYFPLKANQ 160


>UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT
          Length = 290

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 35/174 (20%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGF---------EQLMMWVD---SKNIV 43
           MNY I+++E  +V G   +     G   + + + +         E+++   D      ++
Sbjct: 128 MNYRIEEKESFSVFGIDTILSKVDGECYKRIPEFWLKSIEDGTVERILKAADDGKQNMML 187

Query: 44  PKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVAR--- 100
                   ++N                +P         EG +  +I    +A+       
Sbjct: 188 NAAMYG--HENDGT-----YHYMLCHRIPQKGI----PEGFVQLDIPKLTWAIFPTEEHT 236

Query: 101 --VVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
                +     W + +      S Y+    P FE+Y   G  D  + +E+++ V
Sbjct: 237 EDKTSEKVQAIWERIYPEWFPSSGYQHADAPEFEMYYKVG--DNKYIVEIWIPV 288


>UniRef50_Q054R8 Putative uncharacterized protein n=3 Tax=Leptospira
           RepID=Q054R8_LEPBL
          Length = 181

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 11/141 (7%)

Query: 3   YEIKQE--EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
             I++E      V     +G + + V   FE L   +  K I   +  ++Y DNP++ P 
Sbjct: 28  VRIREEVKGPFYVLSHERIGDY-RNVGLTFEVLQKELPKKGIRDFKLFSIYLDNPNDVPK 86

Query: 61  EKLRCDTVVTVPGYF-TLPEN-SEGVILTEITGGQYAVAVARVVG-----DDFAKPWYQF 113
           EKLRC+           +PE  S  +    I   +Y  A   +           K + + 
Sbjct: 87  EKLRCEVGALFAEPLSKVPEGLSLDLKTRTIPSRKYIFAEFPLKNFLSIFLGIYKVYPKL 146

Query: 114 FNSLLQDSAYEMLPKPCFEVY 134
           F    ++    +  +   E+Y
Sbjct: 147 FRVC-EERGCNLKGRASMEIY 166


>UniRef50_D1AJG5 Transcription activator effector binding protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1AJG5_SEBTE
          Length = 153

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 1   MNYEIKQEEKRTVAGF--HLVGPWEQT---VKKGFEQLMM---WVDSKNIVPKEWVAVYY 52
           M YEI +   +T+AG          Q    + K +E+      +  ++N    +   VY 
Sbjct: 1   MKYEIVEIPTKTMAGISIRTTNENMQAVNDIGKLWEEFWNKNIFSFTENKKNNKMYGVYT 60

Query: 53  D-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA-KPW 110
           +   D T            V        N++   +  +   +YA    R   D+ A K W
Sbjct: 61  NYEGDFTKPYD--FYACCEVSSEG---NNNDEFSVISVPESKYAKFSLRGNYDEAAEKLW 115

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
              + + L    Y       FEVY N+G +     +E+YVAV
Sbjct: 116 NTIWETKLDRK-YTYD----FEVYHNDGNDPENLLLEIYVAV 152


>UniRef50_B2TR03 Transcriptional regulator, AraC family n=5 Tax=Clostridium
           RepID=B2TR03_CLOBB
          Length = 151

 Score = 54.9 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM---WVDSKNIVPKEWVAVYY 52
           MNYE+   +++ V G             + +   ++ L     +   KN    + + +Y 
Sbjct: 1   MNYEVVNLKEKKVVGVTARTKNCDDNMTEIIGSLWQNLYEGGVYNTIKNKSNDKAIGIYS 60

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVV-GDDFAKPW 110
           D         +  +  VTV    +  EN  E  I+  I  G+YA  +            W
Sbjct: 61  DY-----ESDVNSEYSVTVGCEVSDAENIGEDTIVKVIPAGKYAKFIVHGQVQQAVNNFW 115

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            + +N  L  + Y       FE Y N   E+   +I +Y++V
Sbjct: 116 QELWNMKLNRN-YRCD----FEEYQNCDMENA--EIHIYISV 150


>UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio RepID=A7JZZ4_VIBSE
          Length = 310

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 21/169 (12%)

Query: 2   NYEIKQEEKRTVAGFH--------LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
              I+ +    +AG+H            ++  V   + QL    ++   + + ++ V   
Sbjct: 140 EVRIETKPAFVLAGYHEPIYGLFSATPNFQSKVPSLWSQLYS-SENHTHLERNYLGVI-- 196

Query: 54  NPDETPA----EKLRCDTVV---TVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF 106
             D T A    ++L         +         +++   L  +    YAV        + 
Sbjct: 197 --DVTKAYSSNQQLEYWAGYEYNSASRTSIYKGSTQEPDLLVVPEQTYAVITHIGKASNL 254

Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQP 154
           A     F    L  S Y  +     EVY  +   E     +  ++ V+P
Sbjct: 255 AATLEWFILHWLPYSNYHGIDGYELEVYPEDYDVESENAQMHYWIPVKP 303


>UniRef50_A6CI29 Bacterial transcription activator family protein n=2 Tax=Bacillus
           RepID=A6CI29_9BACI
          Length = 157

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 13/159 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGP---WEQTVKKGFEQLMMWVDS-KNIVPKEW-VAVYYDNP 55
           M  ++   +   + GF ++ P   +   +     +L       K++V     + V+    
Sbjct: 6   MKIKMIDMQDIQLVGFRVLCPGDQYINEIPVAAYRLENHTHEIKHLVNPRTQIGVFI-AG 64

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T  E         V  +  +PE   G++   +   +YAV   + V     K +    N
Sbjct: 65  ECTDEED-GYWICKEVSKFEGIPE---GMVTLTVPPRRYAVYHYQGVNSHIRKAYEDLHN 120

Query: 116 SLLQDSAY-EMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
             + +  +  +    C E+Y  +  + G   +E+   ++
Sbjct: 121 -WIDERNFSRLTGTWCLEIYH-DWKDKGRLSVELLDPIK 157


>UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax=Chlorobiaceae
           RepID=B3QQQ3_CHLP8
          Length = 158

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 9   EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRCDT 67
                A    +GP+ + ++  +  LM W+   ++ +  E   +Y D+P ETP EKLR   
Sbjct: 93  PSGKAATCLYIGPYSE-IEPAYSALMKWIAENSLEMNGEAYEIYLDDPFETPPEKLRTQI 151

Query: 68  VVTVPGY 74
            + +   
Sbjct: 152 HLLLRED 158



 Score = 46.1 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 13/147 (8%)

Query: 4   EIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETP 59
           E+K+              V         GF ++   ++S+   P     A YYD      
Sbjct: 10  ELKELAPVPAIVIRTRVAVSEIGPLFDSGFREIRQVLESQGKQPSAPSFARYYD----MS 65

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
              L  +    V G   +   S  V+      G+ A  +      +    +       + 
Sbjct: 66  EGSLDVEFGYPVDGNVQV---SGRVVSASTPSGKAATCLYIGPYSEIEPAYSALM-KWIA 121

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146
           +++ EM  +  +E+YL++  E     +
Sbjct: 122 ENSLEMNGEA-YEIYLDDPFETPPEKL 147


>UniRef50_Q0W824 Putative transcription regulator (MerR family) n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W824_UNCMA
          Length = 287

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 40/172 (23%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVK----KGFEQLMMWVDSKN----------IVPKEWVAV 50
           IK+  +  V      G  +Q +        +Q+    + +           +   E +  
Sbjct: 131 IKEIPEVRVISKRGTGAPQQVIPGLIGAVMQQIFSPANQRGNVNICGPITLLFNGETL-- 188

Query: 51  YYDNPDETPAE----KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF 106
                 +TP E     L  +  V + G  ++     G  +  + GG+    V      + 
Sbjct: 189 -----TKTPEEWGIAHLEWEIAVPIVGRISVEP---GFEVKALPGGRMVTIVYTGPYHEV 240

Query: 107 AKPW----YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
              +        +  L  +        C E+YLNN  E     +  E+ + V
Sbjct: 241 GGAYTKVIDYIGSHGLTVNGL------CREMYLNNPQEVPESKLMTEIQMPV 286



 Score = 44.9 bits (105), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAE 61
           +E+K      +      GP+ + V   + +++ ++ S  + V      +Y +NP E P  
Sbjct: 218 FEVKALPGGRMVTIVYTGPYHE-VGGAYTKVIDYIGSHGLTVNGLCREMYLNNPQEVPES 276

Query: 62  KLRCDTVVTV 71
           KL  +  + V
Sbjct: 277 KLMTEIQMPV 286


>UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001B9EE80
          Length = 285

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 31/168 (18%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQL-MMWVDSK--NIVPKEWVAVYYDNPDE 57
           MNY I++ +  +V GF      + + ++ +E++  +W D+    I  K W    +++P  
Sbjct: 128 MNYRIEEMKAFSVVGFKK----QVSTQRAYEEVPFLWKDAHAEGIFDKLWNYRAHEHP-- 181

Query: 58  TPAEKLRCDTVVTVPGYFTLPE-------------NSEGVILTEITGGQYAVAVARVVGD 104
                +R    V   G +   E               E ++L       +AV        
Sbjct: 182 -----IRGILGVCADGDYGKNEYFDYIMSVVSTHNPPEPMVLRHFPAAAWAVFELEGDPK 236

Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             A+ W + +   +   AY++ P P  E YL    ++     E+++ V
Sbjct: 237 GIAEMWKRLYTEWIPSHAYDLAPLPAIECYL--PPDEYKN--ELWIPV 280


>UniRef50_B9QWG5 Bacterial transcription activator, effector binding domain,
           putative n=1 Tax=Labrenzia alexandrii DFL-11
           RepID=B9QWG5_9RHOB
          Length = 133

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 23  EQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENS 81
             T+ K F+ +  ++    I    + +AVYY        E +      +V       +  
Sbjct: 7   GTTMGKIFQSVWAFIQKNRIETSGKVLAVYY----TYNPETMTFRAGFSVSPDAAN-KGE 61

Query: 82  EGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAED 141
             +       G+      +         + +  +  + +     +  P +EVYLN+ A  
Sbjct: 62  APIQFDRTPAGKVVYFQHKGAYSTLRDSYGEMMS-WM-EKERLTMGAPAWEVYLNDPATT 119

Query: 142 GYWDI--EMYVAV 152
               +  ++YV++
Sbjct: 120 PEDALLTDVYVSL 132



 Score = 44.9 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 9   EKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRCDT 67
               V  F   G +  T++  + ++M W++ + + +      VY ++P  TP + L  D 
Sbjct: 70  PAGKVVYFQHKGAYS-TLRDSYGEMMSWMEKERLTMGAPAWEVYLNDPATTPEDALLTDV 128

Query: 68  VVTV 71
            V++
Sbjct: 129 YVSL 132


>UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae
           RepID=B1HRP5_LYSSC
          Length = 287

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVA 49
           M Y+I +++K  V G         G   + +   ++++        +           + 
Sbjct: 128 MKYKIVEKDKFQVVGVKRTYNCQDGENTREIPLFWQEINESGFDHQLYQLNNGNINGVLG 187

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108
           V    P+    ++   D  +       + +  E ++  E+   ++ V        D    
Sbjct: 188 VCV--PNTNQGQQGFIDYWI---ATNHVGDVGEDLLTMEVPASKWVVFEVHGPMPDAMQN 242

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            W Q ++     + YE       EVY    A       E+++ ++
Sbjct: 243 TWKQIYSEWFPSNPYEPAGTAELEVYPEEDAYSPDSYSEIWIPIK 287


>UniRef50_A9KIF5 Transcriptional regulator, MerR family n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KIF5_CLOPH
          Length = 306

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 21/163 (12%)

Query: 2   NYEIKQEEKRTVAG-FHL-VGPWEQTVKKG--FEQLMMWVDSKNIVPKEWVAVYYDNPDE 57
           N          VA    + V P E+ +     + +      +  +           NP  
Sbjct: 155 NLRFITLPPMRVAYNIAVSVSPEEEAMIPVIDWLKSANLAGTARLFGGNM------NPMP 208

Query: 58  TPAEK-LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
           +   K        ++P    +P+N   +    + GG YA+       DD    W      
Sbjct: 209 SGEGKPYGYGMCASIPDEIAVPDN---LKEMRLPGGLYAMLE---SSDDIGGSWKTLMEL 262

Query: 117 LLQDSAYEMLP-KPCFEVYLNNGAEDG---YWDIEMYVAVQPK 155
           L  +  YE    K CFE ++ N + DG    + + +   V+ K
Sbjct: 263 LSINDKYESDHSKLCFEEHIRNDSPDGSKNEYFLNLLEPVKIK 305


>UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19 Tax=Listeria
           RepID=B8DCJ4_LISMH
          Length = 159

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 33/170 (19%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQ------------LMMWVDSKNIV 43
           M  EI +    T  G            ++ + + +++            L  +     I 
Sbjct: 1   MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGI- 59

Query: 44  PKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV- 102
               + V   N D       + D  + +    T PE+ E +    I   ++A+  +    
Sbjct: 60  ----LGVCQMNGD-------KMDYYIAIESELTPPEDMEKL---TIPASKWAIFKSVGPL 105

Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            +   K W   +    Q S Y     P  EVY         +  E+++ V
Sbjct: 106 PNAIQKVWEYIYGEWFQTSNYTHGNAPELEVYTEGDTTAADYYSEVWIPV 155


>UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein
           n=1 Tax=Verrucomicrobiae bacterium DG1235
           RepID=B5JGT3_9BACT
          Length = 318

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 17/137 (12%)

Query: 26  VKKGFEQLMMWVDSKNIVPKEWVAVYY---DNPDET------PAEKLRCDTVVTVPGYFT 76
           +   +            + +    VYY   +NP+        P E +       V     
Sbjct: 187 IPNLWNAFFERASELQNLTE---GVYYGLSENPEAINLARQHPDEAI-YLAAAQVDPDAP 242

Query: 77  LPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN 136
           +PE   G+      GG +A    +   D   +     +     +S Y+    P    +  
Sbjct: 243 VPE---GMHSWNSVGGLFAKFEHQGPVDTLGETIAYIYGKWFPESEYKEREGPDINRFGP 299

Query: 137 NG-AEDGYWDIEMYVAV 152
               +      E++V +
Sbjct: 300 RFIPQSENSLFEIFVPI 316


>UniRef50_Q3DSM6 Bacterial transcription activator, effector binding domain
           superfamily n=8 Tax=Streptococcus agalactiae
           RepID=Q3DSM6_STRAG
          Length = 143

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 58/155 (37%), Gaps = 28/155 (18%)

Query: 1   MNYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58
           ++++I ++    +AG     V   ++ +++                   + +      +T
Sbjct: 2   LSFQIVEKPAMILAGVTLENVKSNQEGIQQA------------------IGIC-----KT 38

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSL 117
             +  R D   T     ++ +  +G+ +  I    YAV   +        + W +     
Sbjct: 39  QPD-FRFDYSATYQVETSV-QAPKGLEIIRIPSATYAVISVKGPMPSSLQETWRKIIQGF 96

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            Q++  +    P  E+Y +   +D  + +E+++A+
Sbjct: 97  FQENNLKPANSPNLEIYSSQHPQDTDYQMEIWLAI 131


>UniRef50_A8UHS9 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium
           ALC-1 RepID=A8UHS9_9FLAO
          Length = 338

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 27  KKGFEQLMMWVDSKNIVPKEW-VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVI 85
            + F  +M ++  K +      + VY D         +     + V     LP++S+ + 
Sbjct: 213 GQNFGAIMQFMGPKGLKQSGMPLTVYND----MSTSNVIMSNGIPVNERIDLPKDSD-IS 267

Query: 86  LTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNG---AEDG 142
           +  I   +              K W       L ++  E      FE+Y  +        
Sbjct: 268 IGFIPKIRVLKTTLTGNYTFLPKAWEATM-KHLAENNLEQSEHKPFEIYTTDPDNYPNPA 326

Query: 143 YWDIEMYVAVQ 153
            W  E+Y+ ++
Sbjct: 327 DWKTEIYIPLK 337


>UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium
           botulinum RepID=B2TL55_CLOBB
          Length = 282

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 20/164 (12%)

Query: 1   MNYEIKQEEKRTVAG--FHLV---GPWEQTVKKGFEQLM-----MWVDSKNIVPKEWVAV 50
           MNY+I ++E   V G    +    G   + V + +   M      W+ SK +     + +
Sbjct: 127 MNYKIVEKESFRVVGKQTRITMVDGENFEQVPEFWNNCMKDGSYNWICSK-VGKLGVLGI 185

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
             D       ++      V            +G +   I    +A+  +     D     
Sbjct: 186 CKDFGK----DEFNYMIGV----EEIKDSIPKGYVSATIPAATWAIFESSGALPDAIQDL 237

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
             + F   L  + YE    P  E+Y         +  E+++ ++
Sbjct: 238 TRRIFTEWLPSTGYEHACAPELEIYPEGDIYSSDYKCEIWIPIK 281


>UniRef50_Q12WP7 AraC_E_bind-containing bacterial regulation effector protein n=1
           Tax=Methanococcoides burtonii DSM 6242
           RepID=Q12WP7_METBU
          Length = 132

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 26  VKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPAEKLRC------DTVVTVPGYFTLP 78
           +   F ++  +    NI +    + V +   + +  + +R       D    +P    + 
Sbjct: 2   LPILFTEISQFAVKNNIEIAGPPIYVTH---ETSKEDIMRANSEGNADLEAVIPVSEKI- 57

Query: 79  ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNG 138
           E    V   E+ GG     V     +D    + + F + +  +  ++      E YLN+ 
Sbjct: 58  EGVGDVKCYELPGGNMVKVVHNGPYEDTGPTYQELF-AWIDVNGLKITGLKR-EAYLNDP 115

Query: 139 AEDGYWDI--EMYVAVQ 153
            +    DI  E+YV ++
Sbjct: 116 HDVPPEDILTEIYVPIK 132



 Score = 40.3 bits (93), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV----YYDNPDE 57
           + +  +     +      GP+E T    +++L  W+D   +   +   +    Y ++P +
Sbjct: 62  DVKCYELPGGNMVKVVHNGPYEDT-GPTYQELFAWIDVNGL---KITGLKREAYLNDPHD 117

Query: 58  TPAEKLRCDT 67
            P E +  + 
Sbjct: 118 VPPEDILTEI 127


>UniRef50_Q188Y0 Putative uncharacterized protein n=6 Tax=Clostridium difficile
           RepID=Q188Y0_CLOD6
          Length = 165

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 26/172 (15%)

Query: 1   MNYEIKQEEKRTVAGF-----HLVGPWEQTVKKGFEQLMM---WVDSKNIVPKEWVAVYY 52
           MNYEI +  ++ V G      +  G     + + +++ M    +   K     + + +Y 
Sbjct: 1   MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYT 60

Query: 53  D-NPDETPAEKLRCDTVVTVPGYFTLPENSEG----------VILTEITGGQYAVAVARV 101
           D   D T            V       +N E           +I   I  G+YA  V   
Sbjct: 61  DYQGDFTSPYS--FVACCEVNSNSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVG 118

Query: 102 VGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
              +    W++F+        ++      FE Y  N  +    +I +Y+ ++
Sbjct: 119 GQKEVGDFWFEFW-----QMDFDRTYISDFEEYQCNTFDTKKQEIHIYIGIK 165


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D...   174   7e-43
UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P...   171   5e-42
UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D...   169   2e-41
UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D...   163   1e-39
UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa...   163   2e-39
UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B...   162   3e-39
UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B...   161   6e-39
UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D...   160   1e-38
UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n...   159   3e-38
UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D...   158   6e-38
UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria...   158   7e-38
UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S...   156   3e-37
UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r...   155   5e-37
UniRef50_B8DR99 Transcription activator effector binding n=2 Tax...   155   6e-37
UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=...   153   1e-36
UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=...   153   1e-36
UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=...   151   4e-36
UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba...   150   1e-35
UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P...   149   3e-35
UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax...   149   3e-35
UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R...   149   3e-35
UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D...   147   8e-35
UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=...   147   1e-34
UniRef50_A3YG43 Transcriptional regulator, AraC family protein n...   147   1e-34
UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba...   146   2e-34
UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des...   146   2e-34
UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta...   145   4e-34
UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact...   145   4e-34
UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R...   144   7e-34
UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n...   144   8e-34
UniRef50_A3Y658 Transcriptional regulator, AraC family protein n...   144   1e-33
UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga...   143   2e-33
UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R...   143   2e-33
UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax...   142   3e-33
UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n...   142   4e-33
UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De...   141   8e-33
UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p...   141   9e-33
UniRef50_C5BHP3 Bacterial transcription activator, effector bind...   140   1e-32
UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax...   139   2e-32
UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R...   139   2e-32
UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=...   139   3e-32
UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=...   138   5e-32
UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl...   138   7e-32
UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P...   137   9e-32
UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta...   137   9e-32
UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S...   137   1e-31
UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple...   137   1e-31
UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n...   136   1e-31
UniRef50_A9D6E7 Putative AraC family transcriptional regulator n...   136   2e-31
UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re...   135   4e-31
UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F...   135   4e-31
UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=...   134   7e-31
UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P...   134   7e-31
UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla...   134   1e-30
UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI...   133   1e-30
UniRef50_D1B3I6 Transcription activator effector binding protein...   133   2e-30
UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta...   133   2e-30
UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu...   132   3e-30
UniRef50_C8Q848 Transcription activator effector binding n=1 Tax...   132   3e-30
UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R...   131   6e-30
UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n...   131   9e-30
UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax...   130   1e-29
UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic...   130   2e-29
UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n...   129   3e-29
UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax...   128   5e-29
UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri...   128   6e-29
UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G...   128   6e-29
UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=R...   128   6e-29
UniRef50_A4BA20 Transcriptional regulator, AraC family protein n...   127   1e-28
UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact...   126   2e-28
UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n...   125   5e-28
UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n...   125   5e-28
UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A...   125   6e-28
UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen...   123   1e-27
UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria...   123   1e-27
UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca...   123   2e-27
UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n...   123   3e-27
UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact...   122   3e-27
UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B...   122   3e-27
UniRef50_C5DA82 Transcription activator effector binding n=1 Tax...   122   5e-27
UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C...   121   5e-27
UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T...   121   7e-27
UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulato...   121   8e-27
UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero...   121   9e-27
UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S...   121   1e-26
UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma...   121   1e-26
UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta...   120   1e-26
UniRef50_O34775 SPBc2 prophage-derived putative transcriptional ...   120   1e-26
UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ...   120   2e-26
UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ...   120   2e-26
UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax...   117   1e-25
UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A...   117   1e-25
UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=...   117   1e-25
UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=...   116   2e-25
UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B...   115   5e-25
UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseud...   114   6e-25
UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=...   114   7e-25
UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseo...   113   1e-24
UniRef50_A6LWY8 Transcription activator, effector binding n=5 Ta...   113   2e-24
UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T...   113   2e-24
UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta...   113   2e-24
UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P...   113   2e-24
UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=r...   112   3e-24
UniRef50_A0M275 Effector binding transcriptional activator prote...   111   6e-24
UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta...   111   7e-24
UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B...   111   9e-24
UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C...   110   1e-23
UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=C...   110   2e-23
UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact...   110   2e-23
UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus...   110   2e-23
UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax...   109   2e-23
UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ...   109   4e-23
UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re...   108   4e-23
UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax...   108   5e-23
UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseud...   108   5e-23
UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ...   108   6e-23
UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI...   108   6e-23
UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=M...   108   7e-23
UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi...   108   7e-23
UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ...   108   8e-23
UniRef50_A6UD97 Transcription activator effector binding n=14 Ta...   108   8e-23
UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 ...   107   1e-22
UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=...   107   1e-22
UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl...   107   1e-22
UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P...   106   2e-22
UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1...   106   2e-22
UniRef50_A3Y825 Transcriptional regulator, AraC family protein n...   106   2e-22
UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=...   106   2e-22
UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C...   105   4e-22
UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B...   105   5e-22
UniRef50_A9KRS9 Transcription activator effector binding n=1 Tax...   105   5e-22
UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X...   105   5e-22
UniRef50_P96662 Uncharacterized HTH-type transcriptional regulat...   104   7e-22
UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family pr...   104   8e-22
UniRef50_A6M032 Transcription activator, effector binding n=19 T...   104   9e-22
UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ...   104   9e-22
UniRef50_A5FHW5 Transcription activator, effector binding n=2 Ta...   104   9e-22
UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri...   103   1e-21
UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L...   103   2e-21
UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19...   103   2e-21
UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=...   103   3e-21
UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=B...   103   3e-21
UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C...   102   3e-21
UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavoba...   102   5e-21
UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 T...   101   9e-21
UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax...   101   1e-20
UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla ma...   100   1e-20
UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F...   100   1e-20
UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta...   100   1e-20
UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A...   100   1e-20
UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ...   100   2e-20
UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A...   100   2e-20
UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methano...    99   2e-20
UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S...    99   2e-20
UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokd...    99   2e-20
UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseu...   100   3e-20
UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ...   100   3e-20
UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=C...    99   4e-20
UniRef50_C3JZ42 Putative AraC family transcriptional regulator n...    99   4e-20
UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Mag...    99   4e-20
UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio ...    99   4e-20
UniRef50_D2R723 Transcription activator effector binding protein...    99   5e-20
UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch...    99   5e-20
UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytopha...    99   5e-20
UniRef50_A3XLX8 Probable transcription regulator, MerR family pr...    98   5e-20
UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=M...    98   6e-20
UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croce...    98   1e-19
UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=...    97   1e-19
UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp...    97   2e-19
UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methano...    97   2e-19
UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI...    97   2e-19
UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aerom...    97   2e-19
UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bac...    97   3e-19
UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=C...    96   3e-19
UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac...    96   3e-19
UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=...    96   4e-19
UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staph...    95   6e-19
UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G...    95   6e-19
UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Ta...    95   6e-19
UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C...    95   7e-19
UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-bindin...    95   7e-19
UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=M...    95   7e-19
UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhod...    95   7e-19
UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta...    95   8e-19
UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=S...    95   8e-19
UniRef50_B5JGT3 Bacterial transcription activator, effector bind...    95   9e-19
UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID...    95   1e-18
UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=A...    95   1e-18
UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia...    94   1e-18
UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=C...    94   1e-18
UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax...    93   2e-18
UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1...    93   2e-18
UniRef50_A6LWV9 Transcription activator, effector binding n=1 Ta...    93   2e-18
UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WA...    93   3e-18
UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=H...    93   3e-18
UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta...    92   6e-18
UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S...    92   6e-18
UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B...    92   6e-18
UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax...    91   7e-18
UniRef50_A5V1E8 Transcription activator, effector binding n=1 Ta...    91   8e-18
UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A...    91   8e-18
UniRef50_A4BA46 Transcriptional regulator, AraC family protein n...    91   9e-18
UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus p...    91   9e-18
UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax...    91   9e-18
UniRef50_Q3DSM6 Bacterial transcription activator, effector bind...    91   1e-17
UniRef50_D1AKN1 Transcription activator effector binding protein...    90   1e-17
UniRef50_D2NR94 Uncharacterized protein conserved in archaea n=2...    90   2e-17
UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales ...    90   2e-17
UniRef50_B3PD71 Transcriptional regulatory protein n=1 Tax=Cellv...    90   2e-17
UniRef50_D1AJG5 Transcription activator effector binding protein...    90   2e-17
UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC...    90   3e-17
UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=u...    90   3e-17
UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T...    90   3e-17
UniRef50_Q2PJA4 ORF3 n=1 Tax=Enterococcus faecalis RepID=Q2PJA4_...    89   4e-17
UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n...    89   5e-17
UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=C...    89   5e-17
UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n...    88   7e-17
UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=P...    88   7e-17
UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=A...    88   8e-17
UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=...    88   8e-17
UniRef50_Q2C165 Putative transcriptional regulator (AraC family ...    88   9e-17
UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax...    88   1e-16
UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavoba...    88   1e-16
UniRef50_C6XQS4 Transcription activator effector binding n=1 Tax...    87   1e-16
UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium Re...    87   2e-16
UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collins...    87   2e-16
UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca...    87   2e-16
UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax...    86   2e-16
UniRef50_A3I0M8 Transcriptional regulator, AraC family protein n...    86   2e-16
UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC ...    86   3e-16
UniRef50_A4CQ28 Transcriptional regulator n=1 Tax=Robiginitalea ...    86   4e-16
UniRef50_Q28T08 Transcription activator effector binding n=1 Tax...    86   5e-16
UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kyto...    85   5e-16
UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=A...    85   5e-16
UniRef50_B1L1R5 Transcription activator, effector binding domain...    85   6e-16
UniRef50_Q3AFY4 Putative uncharacterized protein n=1 Tax=Carboxy...    85   7e-16
UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrop...    85   9e-16
UniRef50_B8FW41 Transcription activator effector binding n=6 Tax...    85   9e-16
UniRef50_Q49ZZ7 Putative uncharacterized protein n=1 Tax=Staphyl...    84   1e-15
UniRef50_C9RC23 Transcriptional activator ligand binding domain ...    84   1e-15
UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID...    84   2e-15
UniRef50_A6LX85 Transcription activator, effector binding n=2 Ta...    83   2e-15

Sequences not found previously or not previously below threshold:

UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostri...    96   5e-19
UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=B...    93   2e-18
UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=C...    90   2e-17
UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lacto...    90   2e-17
UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. ...    87   2e-16
UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Er...    86   3e-16
UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=C...    86   3e-16
UniRef50_B1HVH6 Putative uncharacterized protein n=5 Tax=Bacteri...    84   1e-15

>UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72FD7_DESVH
          Length = 326

 Score =  174 bits (442), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDE 57
           M+  I++  +  VA    VGP+ + T+   + +LM W  ++ ++      + V +D+P+ 
Sbjct: 170 MDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPGVKTLGVSWDDPEV 229

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E  R D  + +     +     G    E+ GG YAV    V    F + W + F   
Sbjct: 230 TPPEHCRYDACIVIAPGVEVD---GGCATQEVGGGLYAVYRRPVACGQFTEAWNELFGQW 286

Query: 118 LQDSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154
           L  S  +   +PCFE+Y  +     +G WD+ + + V+P
Sbjct: 287 LPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPVRP 325


>UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria
           RepID=A9BU22_DELAS
          Length = 326

 Score =  171 bits (434), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPKEWVAVYYDNPDETP 59
           M+  I    K  VA   L+GP+   + + +   +  W+ S  +  +    + YD+P  TP
Sbjct: 171 MDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTP 230

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A K R D  V VP +F     S  V    + GG+YAVA  +   +  A  W       + 
Sbjct: 231 ASKCRYDACVEVPAHFV---ASGQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWMP 287

Query: 120 DSAYEMLPKPCFEVY---LNNGAEDGYWDIEMYVAVQP 154
            S  +   +PCFE++       A+ G +  ++ + V+ 
Sbjct: 288 SSGMQCDDRPCFEMFSAATAMDADTGEFCCDICIPVRA 325


>UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM
          Length = 436

 Score =  169 bits (429), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           MN E+ +     VA    +GP+  +T+   + +LM W   + ++        V +DNP+ 
Sbjct: 276 MNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEV 335

Query: 58  TPAEKLRCDTVVTV-PGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
           TP E  R D  + + P    L     G+ +  + GG YA   + +  + F + W   +  
Sbjct: 336 TPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMYTQ 395

Query: 117 LLQDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAVQP 154
            L  S ++   +P +E+Y +      +G WD+ + VAV+P
Sbjct: 396 WLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICVAVRP 435


>UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1UAH3_9DELT
          Length = 285

 Score =  163 bits (413), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           M   +   E+  V      GP++      +  L  W   + +V      +A+ +D+PD T
Sbjct: 133 MEASVVNLEEMNVVFVRHTGPYKD-CNHAWSTLCGWAGPRGLVNADARILALCHDDPDVT 191

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P +K+R D  +TV G   +      + +  I GG+YA  + +    D  K + Q      
Sbjct: 192 PEDKIRYDACITVAGQTEV---QAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQWA 248

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             +  E       E+YLN   +    ++  E+YV ++
Sbjct: 249 PQNGCEADAGASIEIYLNTPDKTAPEELRTEVYVPLK 285


>UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp.
           oral taxon 786 str. D14 RepID=C6IVK7_9BACL
          Length = 304

 Score =  163 bits (412), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M   I +      A    VG + +T  + + +L MW     + P E  ++ +  D+P  T
Sbjct: 146 MQATIVELPLMEAAYVRHVGSYLETY-QAWAKLGMWAAQHQLFPPEQSFIGISLDDPAVT 204

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             E+ R D  VTVP   +  +    +    + GG YA        D  A  +   F + L
Sbjct: 205 EEEECRYDACVTVPDTLSRADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWL 264

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQPK 155
            DS Y+   + C E  +N+ A+D      +++Y+ ++ +
Sbjct: 265 PDSEYDPDDRYCLEFSMNDPAQDPQGKAKVDLYIPIKAR 303


>UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria
           RepID=B3QWJ9_CHLT3
          Length = 331

 Score =  162 bits (411), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPKE---WVAVYYDNP 55
              +K   + TVA    +G ++      +  FE+LM W   + ++       ++VY+D+P
Sbjct: 173 QVTVKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDP 232

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T  +KLR    ++VP    +      V    I GG+YAV    +   ++   W   ++
Sbjct: 233 NITDEQKLRTSVCISVPPNTEVD---GEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWS 289

Query: 116 SLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQP 154
           + L +S Y+   +  +E+YLNN     +G   +E+ V V+P
Sbjct: 290 AWLPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPVRP 330


>UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria
           RepID=A5G790_GEOUR
          Length = 294

 Score =  161 bits (408), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M  E+++  K  V      G + +     +E LM +     ++  E   V + +D+P  T
Sbjct: 140 MKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMTGETLMVGIGHDDPAIT 199

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             EK+R D  VT  G          V +  I GG+YAV + +       + +   F   L
Sbjct: 200 AEEKIRYDACVTFSGDVKPE---GEVGIQTIAGGRYAVFLHKGAYTGLPEIYRNIFAGWL 256

Query: 119 QDSAYEMLPKPCFEVYLNNGA---EDGYWDIEMYVAV 152
             S   +  +PCFEVYLN      +      E++V V
Sbjct: 257 ATSGCTLRDQPCFEVYLNRDPRRTKPENLRTEIWVPV 293


>UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum
           alkenivorans AK-01 RepID=B8FN17_DESAA
          Length = 290

 Score =  160 bits (405), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMW--VDSKNIVPKEWVAVYYDNPDET 58
           M+  I++     V      GP+E+     +E+L     V  +     + + + YD+PD T
Sbjct: 138 MDIRIEEFPPLDVVFIRHTGPYEE-CGIAWEKLCSHPDVAKELGPETQAIGICYDDPDIT 196

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A+K+R D  VT P   + PE   G+    I GG+YAV       +     +   F   L
Sbjct: 197 EADKIRMDVCVTAPPSLSPPE---GMEKQTIKGGEYAVLTHHGPYEGLHDCYRWLFGEWL 253

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             S  E    P  EVY+N+  E    D+  E+ V ++
Sbjct: 254 PSSGREANYAPSLEVYVNSPEEVAPQDLITEIRVPLK 290


>UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1
           Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN
          Length = 286

 Score =  159 bits (402), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDET 58
           +  ++ +  R +A   +VG ++ + +   F +++ +    N++      V VY+D+PD T
Sbjct: 132 HVRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMTDCTACVGVYHDDPDVT 191

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             EK R D  VTV   F   + +  + +  I  G+ AV   +   D   + +  FF+  L
Sbjct: 192 APEKQRADVGVTVDDQF---QPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWL 248

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAV 152
            DS +E    P +E+Y+N+ ++     W  ++ V +
Sbjct: 249 PDSGHEPGDFPAYEIYVNDASQLPPDQWLTDICVPL 284



 Score = 43.3 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM-WVDSKNIVPKEW--VAVYYDNPDET 58
             +++       A     G +  T+ + +      W+      P ++    +Y ++  + 
Sbjct: 213 EIQVQTIPSGKCAVLRHQGHY-DTLHEAYRWFFSVWLPDSGHEPGDFPAYEIYVNDASQL 271

Query: 59  PAEKLRCDTVVTVPG 73
           P ++   D  V +  
Sbjct: 272 PPDQWLTDICVPLAE 286


>UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZC0_DESAD
          Length = 297

 Score =  158 bits (399), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
             EI+  ++  V     VGP+ + V K +E+L  W   K +  +  E++ + YD+PD TP
Sbjct: 145 EVEIRTRDEIQVVFIRHVGPYPK-VTKAWEKLCGWGFGKGLFSEKTEFLGLSYDDPDITP 203

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             K+R D   TV      P     + L  I GG+YAV       +     + + +   L 
Sbjct: 204 EGKIRYDACFTVNEEVETP---PEMGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLP 260

Query: 120 DSAYEMLPK-PCFEVYLNNGAEDGYWD--IEMYVAV 152
            S Y++    P FE Y+    +    +   E+++AV
Sbjct: 261 SSGYQLKNTIPSFEKYIKVPPDVPPEEAVTEIWLAV 296


>UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI
          Length = 157

 Score =  158 bits (399), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA
Sbjct: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD
Sbjct: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157
           SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH
Sbjct: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157


>UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum
           'So ce 56' RepID=A9GLA7_SORC5
          Length = 346

 Score =  156 bits (394), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPD 56
           MN  +K      VA    VGP+    +V + +++L+ W  ++++   +   +++ +DNP 
Sbjct: 189 MNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWTPDRICLSIAHDNPK 248

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T   K R D  + +P  F        V +T+I GG+YA              W Q F  
Sbjct: 249 VTEPAKCRLDAAIVIPQDFKAD---GDVNVTDIAGGKYAAGAWVGDARAIGSAWDQLFGK 305

Query: 117 LLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQP 154
            L +S  +   +PCFE+Y       +   +  E+ + V+P
Sbjct: 306 WLPESGDQPDHRPCFELYRGEFHDPKTHNFRCELCLPVRP 345


>UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UFH4_YERRU
          Length = 159

 Score =  155 bits (391), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 1/155 (0%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M + I ++    V    +VGP+ +T+ +GF QL  W     I  + W+A+Y+DNP+ TPA
Sbjct: 1   MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSWHQHHQIPAQTWLALYWDNPETTPA 60

Query: 61  EKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +LR D   +V   F LP N SEGV+L  I GG YAV   RV+  D+AK W + +   L 
Sbjct: 61  AELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQHLP 120

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
            S Y      C+EVYLN+G  DGY+DI++Y +V+P
Sbjct: 121 ASGYVPAEGACYEVYLNDGQADGYFDIDIYQSVEP 155


>UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio
           RepID=B8DR99_DESVM
          Length = 156

 Score =  155 bits (391), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 7/158 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           M   I++  +  VAG  ++GP+ ++  K ++ L  W+  + +     +   + +D+P+ T
Sbjct: 1   MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQVTSASTMFLGLCHDDPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E++R D +VTVP  F   E  + VI+  I   +YAVAV +         W   +   L
Sbjct: 61  PPERIRYDAMVTVPEDF---EPDDYVIVRVIRAREYAVAVHKGPYATLPWSWSALYWEWL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
             S    L  P  E YLN+       ++   +Y+ + P
Sbjct: 118 PVSGRTPLGAPRMEAYLNDPGATPEDELLTHLYLPLAP 155


>UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia
           RepID=B1JSX5_BURCC
          Length = 293

 Score =  153 bits (388), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 5/156 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59
             EI++            G + + V   FE++  WV    ++      + ++YD+PD TP
Sbjct: 139 EVEIRRLPALRGYAVTHTGAYMK-VGDAFERIGAWVGQHGLIGPGAKMIGIFYDDPDTTP 197

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             +LR                   V    I GG+YAV +      D    +   +   L+
Sbjct: 198 EAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLR 257

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S  E    P FE+YLN   +    D+  E+++ ++
Sbjct: 258 HSGREAADAPPFELYLNTPMDTAPADLRTEIHLPLR 293


>UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus
           LGP32 RepID=B7VT37_VIBSL
          Length = 280

 Score =  153 bits (388), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           MN  +   +   V      G +       + QLM +V S  ++  E   + + +D+P+ T
Sbjct: 126 MNINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLIQPETIMIGISHDDPNIT 185

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             + +R D   T+     LPE   G+    I GG+YA A+ +   +  ++ +       L
Sbjct: 186 LVDNIRYDACATIVTEMELPE---GIDRKTILGGKYAKALHKGTYEKLSEAYSYLLLKWL 242

Query: 119 QDSAYEMLPKPCFEVYLNNGA---EDGYWDIEMYVAVQ 153
            DS +E+  +PCFEVYLN      +      E+Y+ ++
Sbjct: 243 PDSGFELRDQPCFEVYLNRDPRRTKPENLKTEIYIPIK 280


>UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria
           RepID=B2SZ92_BURPP
          Length = 314

 Score =  151 bits (383), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
              I+  E   V     VGP+ Q + K F+ L  W+   N++      V VYYD+P    
Sbjct: 159 EVVIRHVEPIEVLSVDHVGPYMQ-IGKAFDALFGWLAKHNLLAGQMRMVGVYYDDPGVVA 217

Query: 60  AEKLRCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             +LR    V +P         S  V +  + GG+YAV   R    D    +   + + L
Sbjct: 218 ESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLYGTWL 277

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
             S  E    P FE YLN+  +    D+  E+ + +
Sbjct: 278 VQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPL 313


>UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative
           symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK
          Length = 319

 Score =  150 bits (379), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGF-EQLMMWVDSKNIVPK-EWVAVYYDNPDET 58
           M   +       VA    VGP+  +V + +    + W  ++ ++P         D+P  T
Sbjct: 163 MQVTLTTLPAVRVAYMRHVGPYGVSVNQFWTGTFLPWCFAQGLLPGASSFGRGLDDPHIT 222

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             E  R D +V VP  F     +    +  + GG+YA+A            W +     L
Sbjct: 223 APEHCRYDAMVQVPDDFVARSPAS---MATLPGGRYAIAPFEGTVPQLTVAWTELLRDWL 279

Query: 119 QDSAYEMLPKPCFEVYLNN---GAEDGYWDIEMYVAVQP 154
             S  ++  +P FE    +    A  G    E+ + VQP
Sbjct: 280 PASGMKLDGRPLFEHMPPDARYDAATGVMQCELCIPVQP 318


>UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria
           RepID=B5WD53_9BURK
          Length = 416

 Score =  149 bits (377), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
              I+  E   +     VG + Q + K F+ L  W+   N++      + VY+D+P    
Sbjct: 118 EVVIRYVEPMEILSVDHVGSYMQ-IGKAFDALFGWLAKHNLLAGQMRMIGVYFDDPGVVE 176

Query: 60  AEKLRCDTVVTVPGYFTLPENSE-----GVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
            + LR    V +PG       +       V +T I GG+YAV        D    +   +
Sbjct: 177 EQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAAYDWLY 236

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYV 150
            + L  S  E    P FE YLN+  E    ++  E+ +
Sbjct: 237 GTWLVQSGREAADAPVFEEYLNSPKETAPAELVTEICL 274


>UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZC1_DESAD
          Length = 153

 Score =  149 bits (376), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           M+ +I   +   +A    VGP+E+ V K +E+L  W        +   +  VY+D+P + 
Sbjct: 1   MDVQIWTLDPAKMAYAEHVGPYEE-VGKAWEKLCAWAGPNGHFNEKTRFYGVYHDDPGQV 59

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           PA +LR +  +T+     +P    G+ L   +GG+YAV       +     W +F+   L
Sbjct: 60  PAAELRSEACITLENEVEVPA---GIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWL 116

Query: 119 QDSAYEMLPKPCFEVYLNNGAED-GYWDIEMYV-AVQ 153
             S       PC+E Y+N+         + + +  ++
Sbjct: 117 PQSGETHAEAPCYEQYMNDPNNTKPEHLVTILLMPLK 153


>UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae
           RepID=Q1GMI1_SILST
          Length = 277

 Score =  149 bits (376), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           N  ++ E  R +      GP+ + + + FE      +S+N+ P     + VY D P E P
Sbjct: 127 NVTLRDEPARHLVTVPHRGPYAE-IGRAFEHFSALANSRNLWPQLGPVLGVYLDAPGEMP 185

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            ++LR        G  T     EG+    + GG+ AV   +      A  +   F   L 
Sbjct: 186 EDQLRSYAGAEYRGDGTP----EGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGGWLP 241

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S      +PC+E+YLN+       ++  E+ + ++
Sbjct: 242 QSGETPADQPCYEIYLNDPRATAPEELLTEIVLPLR 277


>UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor
           n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB
          Length = 299

 Score =  147 bits (372), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           +  IK     T+A     G + + + K FE+L   + S+ ++       A+YY +P    
Sbjct: 145 DVAIKTLPSETLAVLPHRGAYME-IGKAFEKLFGILVSRQVIGQIGAMKALYYSDPTHVA 203

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            + L+      +   F +      +   E  GG YAV   +    D    +   +   L 
Sbjct: 204 EDDLQSAAGAVIGDGFPVEAP---LETRETRGGDYAVLRYKGPYADMKWAYEWLYGEWLT 260

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
            S  E    PC EVYLNN  +    D+  ++ + ++P
Sbjct: 261 QSGREPDDAPCLEVYLNNPRDTAPADLLTDICLPLKP 297


>UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes
           RepID=Q81BV9_BACCR
          Length = 296

 Score =  147 bits (371), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKN---IVPKEWVAVYYDNP 55
           N EI   +   VA    +G +E+      K  E+L  +   +N       + + +Y+D+ 
Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T    LR    VT+    T+  N  G+    I  G+YAV    +  D++   W   + 
Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGI--MVIPSGKYAVGHFEICQDEYKGAWDFIYG 254

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQP 154
             L +S Y+      FEVY N+  +       +++YV ++P
Sbjct: 255 EWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEP 295


>UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3YG43_9GAMM
          Length = 327

 Score =  147 bits (371), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDE 57
           M+ ++K   ++ V     VG +E+  + + + QL+ +  ++ I    ++  A  YDNP  
Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVL 229

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP  K R +  + +P        +    +  I  GQYAV   +  G +  +    F++  
Sbjct: 230 TPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHW 289

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           L  S YE    P  E YLN+   DG+ ++E+Y+ ++ 
Sbjct: 290 LPQSGYEPDHFPVIEHYLNDARVDGFVEMEIYIKLKA 326


>UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales
           RepID=Q8A6I0_BACTN
          Length = 285

 Score =  146 bits (370), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           +  EIK    R V    L G ++       + +L  ++  + +   ++  + +Y+D+P  
Sbjct: 131 LKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKLPMGDFSPLCIYHDDPKV 190

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TPAEKLR D  + +P           V    +  G+YA+ + +   D+    +   +   
Sbjct: 191 TPAEKLRTDVCMVMPVQV---APKGDVGFKTLPAGRYAIFLYKGTYDNLQAVYDTIYGKC 247

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L +    +  +P  E YLNN  E    ++  E+Y+ V+
Sbjct: 248 LPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPVE 285


>UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V01_DESDG
          Length = 308

 Score =  146 bits (368), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDET 58
           +  E+K      VA     GP+ Q  +  ++ L  W   + +V    +++ + YD+P+ T
Sbjct: 154 LEPEVKVLAPVRVAFVRHTGPYAQ-CEAAWKTLCDWAFPQGLVMAQTQFMGICYDDPEVT 212

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             +K+R D  ++VP           V + E+ GG+Y  AV +         +        
Sbjct: 213 APDKIRYDACISVPDNVQAEHP---VAIREVEGGEYVCAVWKGPYTGLTNAYAALCGQWG 269

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
             S  E    P  EVYLN+       ++  E+ + + P+
Sbjct: 270 GRSGREFRAAPSVEVYLNDCTSTPEQELLTEIRMPLMPR 308


>UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp.
           JE062 RepID=B6R4C2_9RHOB
          Length = 296

 Score =  145 bits (367), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPK-EWVAVYYDNPDE 57
             E+ + E RTVA     G +++      + F  LM W   + +    E + +++D+P  
Sbjct: 141 KVEVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGLAHGAEMMCLFHDDPQV 200

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T AE +R  + +T+ G   +      V    + GG+YA     +  D     W   F   
Sbjct: 201 TDAELMRFSSCLTLRGPADVE---GEVGKMMVGGGRYACGHFVITHDQSQAAWEYMFGDW 257

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           L  S YE    PCF++Y +   E G  ++ + + V+P
Sbjct: 258 LPLSGYEPENIPCFQLYPSMTGEMGPHEVVICIPVRP 294


>UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae
           RepID=A1JN27_YERE8
          Length = 157

 Score =  145 bits (367), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M ++I +++ + +    +VGP+ +T+ KGF+QL        I  K+W+ +Y+DNP+  P 
Sbjct: 1   MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKDWLVLYWDNPETNPP 60

Query: 61  EKLRCDTVVTVPGYFTLP-ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +LR D  ++V   + LP E S+ + L  I  G YAV   RV  DD+AK W + +N  L 
Sbjct: 61  AELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQHLP 120

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKH 156
            S Y      C+EVYLN+G  DGY+DI++Y +V+   
Sbjct: 121 QSGYRPTEGACYEVYLNDGRADGYFDIDIYQSVEKDQ 157


>UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae
           RepID=B6R2M9_9RHOB
          Length = 283

 Score =  144 bits (364), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETPA 60
            EIK+  +R++      G + + +   F +L   + S+ ++      V +YYD+P   P 
Sbjct: 133 VEIKEVPERSLQALFHRGSYFE-MGVVFSKLAAMLSSRGVIRKCGPIVGIYYDDPSLVPL 191

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++LR      VP  F    N+EG+    I GG+ AV   +         ++  +   L  
Sbjct: 192 DELRSHVGAVVPQNF---ANTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVWLPT 248

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           S  E   +PC+EV+LN+       D+  E+++ +Q
Sbjct: 249 SGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPLQ 283


>UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha
           proteobacterium BAL199 RepID=A8TTK0_9PROT
          Length = 330

 Score =  144 bits (364), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           ++   ++      A    VG +   +   F ++    D + +     + + V YD+P  T
Sbjct: 176 LDVSTREFPTYPFAFLRHVGRYND-IGPVFRRVAAIADERRLFGPDTKVMMVAYDDPSVT 234

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             ++LR D  V++        ++  +I  EI GG YAV V +   D     +     S L
Sbjct: 235 DEQRLRSDAGVSL---TDPTVDTGELIKGEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWL 291

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            +S YE   +PC +VYLN   +    D+  E+ V ++
Sbjct: 292 PNSGYEAADRPCVDVYLNKVEDTRPEDLLTEIRVPIR 328


>UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3Y658_9GAMM
          Length = 302

 Score =  144 bits (363), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 2   NYEIKQEE-KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           +  I Q +    +  +   G +   + + FE+L  W   + +  +    +AVY+ +PD T
Sbjct: 148 SVSISQLDTPIHMVVYPHQGSYMN-IGQAFEKLSGWAGMRQLFDQTTRMMAVYFHDPDNT 206

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P  +LR    +T+     +P     +   +I  G YAV   +    D  + +  FF + L
Sbjct: 207 PEAELRSLAGITLTPE-KVPNLEAPLEHYDIQSGNYAVLRYKGPYADMHRAYKWFFGTWL 265

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            +S YE+  +P FE YLN+  +    D+  ++Y+ ++
Sbjct: 266 AESGYEVADQPPFEEYLNDPRQVAPNDLLTDIYMPLK 302


>UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria
           RepID=Q2BPM6_9GAMM
          Length = 292

 Score =  143 bits (361), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59
           N E+ + E   + G+   G + + +   F++L M+  SK ++  E   + +YY++P    
Sbjct: 139 NVEMMEFETTNLLGYEHKGDYME-IGNAFDKLFMFAGSKRLIGPETRSIGIYYNDPGSVD 197

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A +LR    ++V       E  +     +I  G+ A  + +    +  KP+  FF   L 
Sbjct: 198 ASELRSHACISVEAPRDAEEEQDP-ENLQIPAGRCATLLFKGPYAELEKPYNWFFGQWLP 256

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146
            S  E    P FE YLN+       ++
Sbjct: 257 QSGLEAADFPPFEEYLNDPRTTAPSEL 283


>UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas
           palustris RepID=B3QF69_RHOPT
          Length = 286

 Score =  143 bits (360), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59
           + EI++ +          GP+ + + K F  L   + ++  +P+    +AVY D+P   P
Sbjct: 128 SIEIQRFDAIPAFAIRHDGPYIE-IGKAFGMLFGQLAARGALPERIEMIAVYLDDPTAVP 186

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+LR    +  PG   L    E +   EI GG YAV   +    D +  +   F + L 
Sbjct: 187 LERLRSFAALAAPGGKDLDPPVERI---EIAGGDYAVLRHKGPYADMSAAYNWLFGTWLP 243

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S  E   +P  E YLN+  +    D+  ++ + ++
Sbjct: 244 QSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLR 279


>UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea
           psychrophila RepID=Q6ALR9_DESPS
          Length = 155

 Score =  142 bits (358), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDET 58
           MN +IK+  +  VA    +G + + T K+ F +L+ W + K  +     + +Y+DNP+ T
Sbjct: 1   MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGTILGLYWDNPETT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P EK R D  +TVP           + +  I+GGQYAV    +  + F + W   F+   
Sbjct: 61  PPEKCRTDACITVPDG---TLAEGTIGVQLISGGQYAVCHFEITAEGFQQAWKDAFS-WF 116

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAVQP 154
               YE   KPC+E++ NNG ED    W  ++ + ++ 
Sbjct: 117 IGKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPLKK 154


>UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis
           pacifica SIR-1 RepID=A6GKR6_9DELT
          Length = 306

 Score =  142 bits (358), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55
           +  ++   ++ +A    VGP+       +  + +   W   + ++     E V +Y+DNP
Sbjct: 149 SINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCAWAGPRGLLGAPNSEMVCIYHDNP 208

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T  +KLR    VTV       E S  + L  I  G+Y  A   +   D+A  W     
Sbjct: 209 EITEDDKLRISLGVTVAPG---TETSGEINLLTIPAGKYVCARFELTSKDYAGAWNTLMG 265

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAVQP 154
             L +S Y+   +P +E YL++ +ED      +E+ + V+P
Sbjct: 266 -WLPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRMGVKP 305


>UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio
           magneticus RS-1 RepID=C4XUB5_DESMR
          Length = 292

 Score =  141 bits (355), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           ++  IK      VA    VGP++Q     +  L        +     +++ + +D+P  T
Sbjct: 137 LDVVIKTLPLMKVACVRHVGPYDQCEP-AWASLCAKAGPLGLFGPDTKFIGIGHDDPQIT 195

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P EK+R D  +TVP  F     +  + +  I G  YA AV +    + A  +        
Sbjct: 196 PPEKIRYDACMTVPDSF---AGTPDLPVASIGGRDYASAVVKGPYTNLAPAYAWLCGVWG 252

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
            D   E   +P  E+YLN+        +  E+ V V P
Sbjct: 253 PDCGREFAMEPSMEIYLNDPKTTPPDQLLTEILVPVGP 290


>UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC
           family n=1 Tax=Chromobacterium violaceum
           RepID=Q7NYH2_CHRVO
          Length = 284

 Score =  141 bits (355), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETP 59
             EI + +   V   H  GP+ + + K F+ L      +  V  P     +Y D+  +TP
Sbjct: 131 QVEIVERDAVKVLMRHHRGPYME-IGKAFDALRAVQGPQQGVGAPSRSFGLYLDDQAQTP 189

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A   R     TVP +       +G     I  G+YA  +      +  + W   +   L 
Sbjct: 190 AADCRSIACATVPAFMEGKA-MDGFEWGSIPAGRYAAVLHTGPYSELGECWDWLYRHWLP 248

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD 145
            S       PC E YLN   +    +
Sbjct: 249 ASGEMPGDTPCVEEYLNAPYDTPPAE 274


>UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein;
           putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9
          Length = 155

 Score =  140 bits (354), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 2/155 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M   I     + +    + GP+ Q++  GFE+LM W     +   +W+A+YYDNP E   
Sbjct: 1   MQVRIVSLAAQPLFVLRVQGPFAQSLGPGFERLMAWSARHGL-RGQWMALYYDNPREVAP 59

Query: 61  EKLRCDTVVTVPGYFTLPENSE-GVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           + LR D  +T        +    G+    + GG YA+A  RV  +DFA PW   F+  L 
Sbjct: 60  DALRADVALTTASVTLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQALP 119

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
              Y     PCFE YL++G   G W +E+ V V+ 
Sbjct: 120 ACGYRPDGGPCFERYLSDGRGSGEWLLELGVPVRK 154


>UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus
           RepID=A7GQI7_BACCN
          Length = 152

 Score =  139 bits (351), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           MN +I+   K  +A    VGP+     +  E+L  W   K  + +  +   + +DNP+ T
Sbjct: 1   MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHLDETAIVLGISHDNPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E  R D  + +     +    + V  +E+ GG+YA+       +   K W + F++LL
Sbjct: 61  PPESCRYDACIVIEKNEPID---DFVAESELPGGKYAIYEVEHTAEAIQKAWIEIFSNLL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
            +S YE+  +P FE Y+    ++     E+ V ++ K
Sbjct: 118 -NSDYEIDTRPVFERYMKKMVDN--HLCEICVPIRAK 151


>UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales
           bacterium HTCC2083 RepID=B6B1U3_9RHOB
          Length = 272

 Score =  139 bits (351), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
            +++   +R +A    VG +   V K +E++      +++       V +YYD+P   P 
Sbjct: 117 VKVEDAPERRLAAMAHVGAY-NGVSKSYEKVAAVFTIRDLWKHARGMVGIYYDDPSTVPE 175

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
            +LR    V +     +P+  E V+   I G + AV V +       + +   +   L  
Sbjct: 176 AELRSYAAVELADDVVVPDPLEEVL---IRGDESAVLVMKGAYTGLQEAYEWLYGQWLPQ 232

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
           S      +P +E+YLN+  +    D+  ++YV +QPK
Sbjct: 233 SGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPLQPK 269


>UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria
           RepID=Q88KW6_PSEPK
          Length = 289

 Score =  139 bits (350), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 53/158 (33%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           M   I    +  VA     GP    V +   +   W       P        + YDNPD 
Sbjct: 135 MQIRIVNFAETHVAALEHQGPPG-LVSESVARFRQWRMHSGQSPVASSRTFGIPYDNPDT 193

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TPA   R      +     +  N  GV    I  G+ AV       D   +  Y  +   
Sbjct: 194 TPAHAFRFAVCGEIDE--AVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPLYRDW 251

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153
           L  S  E+   P F  YL+   E     W  ++YV ++
Sbjct: 252 LPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPLK 289


>UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria
           RepID=B5XU59_KLEP3
          Length = 289

 Score =  138 bits (349), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           M+  I       +A     G     V     + + W  +  + P    +   + +D+P  
Sbjct: 135 MDVNIISFPTTRIAVLQHRGS-PDLVNTTAARFIAWRKTSGLSPVATSDTWGIAWDDPQT 193

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E  R D   TV G   + EN+ GVI  EI GG+ AV       D  A   +  +   
Sbjct: 194 TPQEAFRFDICGTVAG--PVGENAFGVINGEIPGGRCAVVRHHGSLDTLANSVWFLYRDW 251

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           L  S   +   P +  YLN   E    ++  ++Y+ +
Sbjct: 252 LPASGETLRDFPVYFRYLNFVHEVAEHELQTDIYLPL 288


>UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile
           RepID=Q17ZT7_CLOD6
          Length = 306

 Score =  138 bits (347), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNP 55
             EI + +          G +     T  K  E+L  +   +N++     + +A+Y+DNP
Sbjct: 146 EIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNP 205

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
             T   +LR    +T+P    + EN + +    I  G+Y V    +   +++  W   +N
Sbjct: 206 QFTQEHQLRTSICMTIPDNIVVKEN-DNLGNMIIPSGKYLVGHFDISKSEYSDAWDFMYN 264

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQP 154
             L +  Y++     FEVYLNN          +++Y+ ++P
Sbjct: 265 EWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPIEP 305


>UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria
           RepID=Q31GA4_THICR
          Length = 288

 Score =  137 bits (346), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           MN ++ + +   +A     GP  + ++        W  +    P    +   + YD+PD 
Sbjct: 134 MNIDLVEFDHTLIAVLEHRGP-AEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDPDT 192

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
               K R D    V    T+P+N++G+I   I  G+ AV       +         + + 
Sbjct: 193 VEPAKFRFDLCAEVKE--TIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW 250

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L +S  E+   PCF  Y N   +    D+  ++Y+ +Q
Sbjct: 251 LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPLQ 288


>UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio
           vulgaris RepID=A1VFK9_DESVV
          Length = 156

 Score =  137 bits (346), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 7/158 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           MN  I+      VA  H  GP+     + +++L  W+    ++  E +   V  D P   
Sbjct: 1   MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTFETLFVGVLGDTPCGL 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            +E    D  V+VP +    E    V +  I GG  A  V +      A+ W   +   L
Sbjct: 61  ASESTGYDAGVSVPQHI---EADGYVSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWL 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
             S       PC EVYLN        ++   +++ + P
Sbjct: 118 PASGRITREAPCVEVYLNAPDSTPDHELLTRLHLPLSP 155


>UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus
           degradans 2-40 RepID=Q21DM1_SACD2
          Length = 287

 Score =  137 bits (345), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 1   MN--YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56
           M    +I++  K  + G    G +   +   FE++ +   SK  + +      +YYD+P 
Sbjct: 132 MKHTVDIEKFNKVELGGLAHQGDYLD-IGAVFEKVFVSAGSKQFLNEHSRSFGIYYDDPT 190

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
                 LR    VT+           G+    +  G +AV        +  + +  F+  
Sbjct: 191 SKDKSALRSHACVTLNPQQVKEA---GLDYLTLEAGNHAVLTFTGPYSELEQAYEWFYGE 247

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
            L  S Y++  +P FE YLN+       ++  ++Y+ +
Sbjct: 248 WLPQSGYQLADRPPFEEYLNDPKTVPPSELLTKIYLPL 285


>UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica
           SIR-1 RepID=A6GAG6_9DELT
          Length = 279

 Score =  137 bits (345), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETPA 60
            E++ +   T  G    G + +   + + +LM        +P     V + YD+PD T A
Sbjct: 122 VELRDDPALTCIGLRHTGSYSE-CGQTWGELMAHAAKAGWMPHVLGSVGLAYDDPDITAA 180

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           E+LR D  + +             +L E+  G+YA+ + R   +   + +       L  
Sbjct: 181 ERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYVGLIGRALPF 240

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
              E+  +P  E YL++ A     ++  E+ V ++ +
Sbjct: 241 RGVELANEPVIERYLDDPATVPLHELRTEICVRIETR 277


>UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter
           litoralis Och 149 RepID=A9HPW1_9RHOB
          Length = 273

 Score =  136 bits (344), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
           + +I+    + +A     G + +     ++++   + + N  P+      VYYDNP+ TP
Sbjct: 122 DVDIQTTSDKRLAALSHRGDYAEG-SVAYQKVATIISTGNHWPQTRGMAGVYYDNPEVTP 180

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E LR    V   G        +G+   ++TGG+YAV   +      A+ +   +   L 
Sbjct: 181 TEDLRSHAGVLWEGGAIP----DGLEEVQLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLS 236

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            S   +   P FE YLN+       D+  ++Y+ ++
Sbjct: 237 SSQESLRDAPSFEHYLNDPTNTAPADLLTDIYMPLE 272


>UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea
           phototrophica DFL-43 RepID=A9D6E7_9RHIZ
          Length = 283

 Score =  136 bits (342), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV--YYDNPDETP 59
           +  I++     + GF   GP+ + +   FE+    V   N+  +       Y+ +PD T 
Sbjct: 132 DVRIEEMGPAKLVGFEHTGPYTE-IGSAFEKFYAEVGPANLASQAMAIAAAYFSDPDITA 190

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+ R    + V     +     G    +I  G+YAV   +    +  K +  F+ + L 
Sbjct: 191 PEECRSLAGMIVSPGLDVA---GGFDRFDILAGRYAVLQHKGAYAELPKAYQWFYGAWLA 247

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           DS       P  E YLN+       ++  E+ + +
Sbjct: 248 DSGESAAAAPAVEKYLNSPMNTAPAELVTEICMPL 282


>UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU
          Length = 292

 Score =  135 bits (341), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 7/155 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK-EWVAVYYDNPDETP 59
           +   IK+            G + +++   +++LM W     I  +   + +++DNP  TP
Sbjct: 139 LEPTIKKIPAFRAVYLRHKG-YNKSIALSWQKLMAWGFEHQISSQARQIGIHHDNPSITP 197

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             + R    + V   F        + + E      AV   +    D        ++  L 
Sbjct: 198 LAECRYIAALEVEEGF---RAQGLLGVMEFPPTLCAVFEVQGRYGDVLGLIDYVYHEWLP 254

Query: 120 DSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152
            S YE    P F +Y  N      G + ++  + V
Sbjct: 255 QSGYEAKTIPAFALYQKNHFLDPLGNFQLDFCLPV 289


>UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes
           RepID=B1KWH9_CLOBM
          Length = 302

 Score =  135 bits (340), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPD 56
           + +I   +   V     +G ++         E+L  +   +N++ ++    +AVY+ +PD
Sbjct: 142 DVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEKKSKPLAVYHSHPD 201

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            +  EK R    +++    T+   S+ +    I+ G YAVA   ++  ++   W   +  
Sbjct: 202 FSDEEKQRTSICLSIKEPITVDGKSD-IGYMSISSGTYAVAHFEILQSEYGDAWDFLYGE 260

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQP 154
            L  S Y       FEVY+NN  E  +    +++Y+ ++P
Sbjct: 261 WLPRSGYLPRNYFPFEVYVNNPNEHSENKHIVDIYLPIEP 300


>UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms
           RepID=B8H068_CAUCN
          Length = 296

 Score =  134 bits (338), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           +  I       VA     G     +     + + W  +  + P       V++D+PD+TP
Sbjct: 142 DVRIVDFPDTPVAVMRHEGDPA-LLGDTIRRFIAWRRAAGLPPRVSATFNVFHDDPDDTP 200

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           AE+ R D         + P   +GV    I GG  AV       DD        +   L 
Sbjct: 201 AEQYRLDLCAATARVASNP---DGVTSGVIPGGPCAVLRQIGSSDDLRAASRFLYGEWLP 257

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQPK 155
            S  E+   P F   ++   +    +   ++++ + P+
Sbjct: 258 RSGRELRDAPFFAQRVSFFPDVPEHEAVTDLFLPLSPR 295



 Score = 43.7 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 3/76 (3%)

Query: 76  TLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYL 135
           T+    + V + +      AV               +F     + +         F V+ 
Sbjct: 135 TMTFTDDDVRIVDFPDTPVAVMRHEGDPALLGDTIRRFIA-WRRAAGLPPRVSATFNVFH 193

Query: 136 NNGAEDG--YWDIEMY 149
           ++  +     + +++ 
Sbjct: 194 DDPDDTPAEQYRLDLC 209


>UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria
           RepID=A9KFE4_COXBN
          Length = 284

 Score =  134 bits (338), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 10/160 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK--NIVP--KEWVAVYYDNPD 56
           MN  IK  + R +A     G   + V +   +L+ W  S+  N+ P   E     YD+P 
Sbjct: 128 MNIVIKNMQARRLAVVEHHG-HPEKVGESINKLINWAKSQAMNLKPKAGEAFGFAYDDPK 186

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  E  + D  +TVP    L  N   VI   +  G+YAVA+     D+     Y  +  
Sbjct: 187 TTEPEAFQFDLGITVPEQLKLEGN---VIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
            L +S  E+   PC   Y N   E    ++  E +V ++ 
Sbjct: 244 WLPNSGEELGDLPCIFCYYNFDHEVAETELRTECWVFLKK 283


>UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales
           RepID=A8UPH5_9FLAO
          Length = 287

 Score =  134 bits (337), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDET 58
             +I   E +    + + G ++       +E+L   V ++ +  K    + + YD+P  T
Sbjct: 134 KPKIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQKLFTKGIKHIGLPYDDPKIT 193

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A+K+R D  + +         +  V + E+ GG++AV + +     FA  +   FN+ L
Sbjct: 194 EADKIRYDACLIIHKDAK---PNGDVGVKELKGGKFAVFLYQGSYKHFADVYDHMFNAWL 250

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
            +S +E+   P  E Y+++        +  E Y+ ++
Sbjct: 251 INSGHELRDAPSREKYISDARRVSEEKLKTEFYIPIK 287


>UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC
          Length = 283

 Score =  133 bits (336), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           MN  I +     +A    +G  ++ ++    Q + W     + P    +   + + +PD+
Sbjct: 129 MNVNIVERPAEKIAYLSHLGSPDKVLETA-AQFIAWRKETGLSPVTKSKTYGIPFADPDQ 187

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TPA++ R D   ++     +PENS GV   EI  G+YA        D      Y  F + 
Sbjct: 188 TPADEFRFDIAGSIEK--AVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRNW 245

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L +   E    P F  Y N   E    D+  ++Y+ ++
Sbjct: 246 LPEQPEEAGDYPVFFHYHNFVHEVNECDLITDIYLLLK 283


>UniRef50_D1B3I6 Transcription activator effector binding protein n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B3I6_SULD5
          Length = 287

 Score =  133 bits (335), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 6/159 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDET 58
           ++ +I+      VA     G +++T+++ + +L  W     +    +  +A+++ NP   
Sbjct: 131 LHVKIQTMPSFDVAYVRHKG-YDRTIQQAWLKLQAWALGHGVDFSDQRMIALHHSNPRFV 189

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            + +      + +P       +   + +  I     AV   + V  D  K     ++   
Sbjct: 190 ESSQCHYVACLELPKGREFYRS-GDIGVMRIPQTFCAVFSLKGVYGDLKKYMDVIYHEWF 248

Query: 119 QDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQPK 155
             SAYE +  P F +Y  N     D  +D++  V V+ K
Sbjct: 249 PQSAYEKIALPSFAIYRENHFINADERFDLDFCVPVRFK 287


>UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TUU5_ALKMQ
          Length = 291

 Score =  133 bits (334), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNP 55
           +  EI++E+   +      GP+    +     F++L  W D + ++     W  +Y+D  
Sbjct: 137 LKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLISSTSRWFVIYHDFG 196

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           +ET  ++LR    ++V     +   S  + +  +  GQYAV    V   ++ K WY  + 
Sbjct: 197 NETDEDQLRLSVCMSVDRNLAV---SGDIGILNLHEGQYAVGSFMVEPSEYDKAWYYMYG 253

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             L  S ++   +   E Y     +     +E+Y+ +
Sbjct: 254 KWLPTSGHKPDDRFSLEHYPKVEEQGDKRLVEIYIPI 290


>UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales
           RepID=Q2KTK1_BORA1
          Length = 279

 Score =  132 bits (333), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 13/160 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV-----PKEWVAVYYDNPD 56
           +  +      T+A     G + Q + + F++L +   ++ ++        W+ VYYD+P 
Sbjct: 126 SVNLVSYPGLTLAALPHQGDY-QRIGESFDRLALLAVNQGLIAPHAESGPWIGVYYDDPR 184

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
           +    +LR    V      +     + +    I   +  V        +    +   F+ 
Sbjct: 185 QVETGRLRSHACV-----ASKGAPGDPLQTLVIPAMRCGVVEYLGPYTEIDHAYDWMFSE 239

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYW--DIEMYVAVQP 154
            L  S  E L  P FE Y N+            +Y+ ++ 
Sbjct: 240 WLPASGEEPLDFPMFEEYANDPKTTPAAALLTRIYLPLRA 279


>UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b
           RepID=C8Q848_9ENTR
          Length = 153

 Score =  132 bits (333), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 2/154 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M   I +   +   G+ L GPW++TV +GF QL  WV    +   EW+A+YY NP   P 
Sbjct: 1   MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWVARHAL-QGEWMAIYYGNPQVVPP 59

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++L  +TV+TVP  F L    EG+    + GG Y      V  +DF   W  FF  L Q 
Sbjct: 60  QELSVETVLTVPADFALAVG-EGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQQR 118

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           S +++  +PC+E YL++G++ G W + MY+ V+P
Sbjct: 119 SDWQVDDRPCYEHYLSDGSQSGNWLLNMYIPVRP 152


>UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE
          Length = 315

 Score =  131 bits (331), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDET 58
             E+K+           +G +++ + K +E+L+ W + + +      +   V +D+P  T
Sbjct: 162 KIEVKEMPDMKAVYCRHMGAFKE-IVKAYEKLIKWAEPRGLYIPNVTKSATVTHDDPSVT 220

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
              K+R    + V G          +    I GG+YAV    +  +DF K W        
Sbjct: 221 ELSKVRQSACIIVEGDVKGE---GEIGNLVIPGGKYAVGHFELGTEDFEKAWNTMC-KWF 276

Query: 119 QDSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAVQP 154
            +S Y+      +E+Y N      +    +++ + ++P
Sbjct: 277 TESGYQQGDGCTYELYHNSHRTHPENKHIVDICIPIKP 314


>UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides
           RepID=Q5LFV9_BACFN
          Length = 382

 Score =  131 bits (329), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 2   NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           +  IK+ ++  VA          +Q     + Q++ +    N+  K +  V++  D+ D 
Sbjct: 222 DCSIKRIKEFKVAYLKFERTHRNKQAYSTLWGQIIEFAKKYNLTDKGFKYVSISLDSLDI 281

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T  +K R    +TVP    +P+   G     I  G Y+V   +    +  K +   +   
Sbjct: 282 TEIDKCRFLIGITVPYSMEVPK---GFGTLNIQAGLYSVFNIKGGYHELNKIYRNVYLDW 338

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPKHH 157
           L +S Y +  +  FE+Y N   +    ++  E+Y+ ++ K  
Sbjct: 339 LPNSKYRLREQMTFEIYANTPNKTSTDELVTEIYLPIEAKQK 380


>UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp.
           MWYL1 RepID=A6W3J7_MARMS
          Length = 286

 Score =  130 bits (328), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           M  +I   +   +A     G   + + +       W  S  + P        + Y++P  
Sbjct: 132 MTVDIVHFDTTKIALLKHRGSPSR-IMESVAIFREWRKSSGLSPITKSRTFNIIYEDPAV 190

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
             AE  RCD    V     + +N  GVI + + GG+YAV       D  ++  Y  +   
Sbjct: 191 VVAEDFRCDLAAEV--MKEVDDNEYGVINSTLAGGRYAVVRHFGPYDSISRCLYFLYGEW 248

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           L DS  E+   PCF  Y N+  E    ++  ++Y+ ++
Sbjct: 249 LPDSGEELGDAPCFFQYHNHFPEVAEHELITDVYLPLK 286


>UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina
           ATCC 23134 RepID=A1ZL96_9SPHI
          Length = 290

 Score =  130 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 64/157 (40%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
           +  +I     + +    ++G +E   ++K +++LM +V ++ +     E   + +D+P+ 
Sbjct: 135 LTPKIIDLPAQQLLSTRILGKYETSVIQKAWQKLMTYVFAQQLFYPTMEMFGISHDHPEI 194

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
                 + +  VT+             ++  +  G+YA+   +         +       
Sbjct: 195 AGDILYQYEACVTLAKPVASE---GEFVVKTLPAGKYAMFTYQGSYAQLDTVYNLVLKQW 251

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           L +S+Y +   P F+ YLN        ++  ++++ +
Sbjct: 252 LFNSSYSLREAPIFDQYLNTPDNTPEEELLTKIFLPI 288


>UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2
           Tax=Rhodobacterales RepID=A3VBK3_9RHOB
          Length = 278

 Score =  129 bits (325), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           + +I+ +  R +      GP+ Q + + FE+    V ++ + P     + +Y+D+P+   
Sbjct: 127 DVKIEDQPARRLGVIDHRGPYIQ-IGEAFEKAGSTVMARGLGPHLGAMLGIYFDDPENGA 185

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           AE LR      +     +      V    + GG++A+          A+ +   F   L 
Sbjct: 186 AEDLRSAAGFEMDEAAEITPPLREV---RLEGGKHAILTHTGPYTGLAQAYKYLFGEWLA 242

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI 146
            +       P FE+Y+N        D+
Sbjct: 243 TAGEMPREAPPFELYVNTPMNTAPDDL 269


>UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium
           carotovorum subsp. carotovorum RepID=C6DEF0_PECCP
          Length = 154

 Score =  128 bits (323), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M+  I+  E   V    +VGP+ + + +GF++++ W    ++   + +A Y+D+P +  A
Sbjct: 1   MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSIDKSLAFYWDDPSKVEA 60

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
           ++LR D  +T     +      G+    I GG YAV    V   DFAK W  F+ + +  
Sbjct: 61  DELRADVAITCKEMPSTLPEDVGIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA-INA 119

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
             Y      C+E YL +G+ +G WDIE++ +V+ 
Sbjct: 120 QGYCPAGDICYESYLCDGS-NGKWDIEIWQSVEA 152


>UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria
           RepID=A8FZF8_SHESH
          Length = 300

 Score =  128 bits (322), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           M       E  T+A   + GP+ Q  ++  + L  W  +K    +  + +Y+DNP+ TP 
Sbjct: 152 METT--TIEAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENAIFIYHDNPEITPD 209

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAKPWYQFFNSLLQ 119
           EK R D    VP      + S  V L    GG YA     V   +++ + W +    L+ 
Sbjct: 210 EKCRTDICFRVPAD---TQASGRVELQVFPGGSYAYIRQTVKQMNEYGQAWSELM-KLVV 265

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           D+  E   +PCFE+Y +   +    D+    AV+
Sbjct: 266 DTGLESDERPCFELYHSFDPQTYVSDVSFCTAVK 299


>UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria
           RepID=Q12JT5_SHEDO
          Length = 289

 Score =  128 bits (322), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDET 58
           + ++ +   + VA     G  E+ ++   +Q + W  +  + P        V   +P+  
Sbjct: 136 DVKLIELPIQKVAQLEHSGAPEKLMETA-KQFIEWRKTTGLSPVAISRTYGVPNGDPNTM 194

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            AE  R     +V     +P+N  GV+   + GG YAV       D      Y FF   L
Sbjct: 195 AAEDFRFRFCGSVNE--AVPDNEYGVVTGTLAGGCYAVIRHEGSHDAMESSIYGFFREWL 252

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             S   M  +P F  YLN   +    D+  ++Y+ ++
Sbjct: 253 PQSGKAMRDEPLFFHYLNFIHQVDECDLLTDIYLPLE 289


>UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=Rhodobacter
           sphaeroides RepID=B9KLE9_RHOSK
          Length = 156

 Score =  128 bits (322), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 8/154 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPA 60
             I++   R +A     G +E+ +   F Q+   ++ ++++ +    + VY+DNP   P 
Sbjct: 6   VHIRETSPRRLAALRHTGAFEE-IGATFGQICQILEERSLLSQAGCMIGVYWDNPLLAPP 64

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
             L     + VP    +    E +    + GG++AV          A+ +  FF+  L +
Sbjct: 65  GALHSHAGIDVPEGMEIAPPLEEL---RLAGGRHAVLQYTGPYSGLARAYRYFFSQWLPE 121

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +       P  E+Y N   E     +  E+ V +
Sbjct: 122 AREIQAEGPLIEIYRNAAMETPSDQLVTEICVPL 155


>UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2
           Tax=Gammaproteobacteria RepID=A4BA20_9GAMM
          Length = 313

 Score =  127 bits (319), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 7/155 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
           +  + +     +A     G   + +    +  + W     + P       + YD+P+E  
Sbjct: 158 DVTVIEMPAIPLAVMPHRGNPAR-LSHTLQAFIAWRKRNGLSPSHSRTFNLVYDDPNEVT 216

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            +  R D    + G   LP + EG+    I  G+YA A  +   D   +  +  +   L 
Sbjct: 217 DDDYRFDLACEIQG--ELPADFEGMESRTIPAGRYARARLQGSDDALERLVHSLYAEWLP 274

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
            S Y++   P     +    +    ++  ++Y+ +
Sbjct: 275 SSGYDLADFPLLFERVRFFPDVSEHEMITDVYLPL 309



 Score = 39.5 bits (91), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 39/154 (25%), Gaps = 33/154 (21%)

Query: 7   QEEKRTVAGFHLVGPWEQTV--------KKGFEQLMMWVDSKNIVPKEW-----VAVY-- 51
           +     +A     G     +         + F +   +     + P ++      +V+  
Sbjct: 84  KRAAFRLAY--RAGDSITNIGYDCGYDSPEAFNR--AFRKHFGLAPSDFRRSPDFSVWAQ 139

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWY 111
           + +P             +       +P     V + E+     AV   R      +    
Sbjct: 140 HYDP-------------IQTLRNQHMPAPLPDVTVIEMPAIPLAVMPHRGNPARLSHTLQ 186

Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWD 145
            F     + +         F +  ++  E    D
Sbjct: 187 AFIA-WRKRNGLSPSHSRTFNLVYDDPNEVTDDD 219


>UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales
           RepID=Q64RP2_BACFR
          Length = 280

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIVPK--EWVAVYYDNPD 56
           +  EI  E +  +    ++G + +     + + +L  ++    ++     W+ + +D+P 
Sbjct: 128 LKPEILTEPELKLVYIRIIGRYGEEEPYIEAWRKLRDFLQINGLLTPSTRWIGISFDDPT 187

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  E+ R     TV    +         +  I  G+YAV   R       + + + ++ 
Sbjct: 188 VTKTEQCRFYACATVEHDVS---PQGAFGMKTIPQGRYAVYTLRGSYSGLQEMYDRIYSH 244

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153
            L  +         FE YLN   +    D    +Y+ ++
Sbjct: 245 PLPTA---FRDATSFEEYLNCEPDTEEKDYVTRIYIPIE 280


>UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla
           marina ATCC 23134 RepID=A1ZSG3_9SPHI
          Length = 292

 Score =  125 bits (314), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
           + Y I+      +      G +  Q +   ++ L+ +   + ++ ++   +    D+ + 
Sbjct: 132 LTYSIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLLKEDTHYLGELMDDDEI 191

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
              E  R +  +T+P      E +       I  GQY     +   +     + Q F   
Sbjct: 192 VKDENCRYNAAITLPQEAVF-EPTGFFNTKTIESGQYVCVTHQGDRNKLDTVYEQIFLHW 250

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +  + +E++ KP  E YLN+  +    D+  E+YV V
Sbjct: 251 IVKNEFEIVDKPFLEFYLNDETDTATKDLLTEIYVPV 287


>UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2
           Tax=Proteobacteria RepID=A6FZ48_9DELT
          Length = 300

 Score =  125 bits (314), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETPAE 61
           ++  +   VA     GP    +    ++ + W       P+     + V YD+P+    E
Sbjct: 146 LRTLDPIPVAALEHRGPPATLMASV-QRFIAWRRGSQAAPEPSTRTLGVLYDDPESVAPE 204

Query: 62  KLRCDTVVTVPG--YFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             R D    +             GV+   I GG+YAVA  R   D   +     +   L 
Sbjct: 205 DFRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRGSTDAIGETVMGLYRDWLP 264

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAV 152
            S   +   P    Y+         +   ++Y+ +
Sbjct: 265 GSGERVRDAPLVFHYIERVPRVAEHEQVTDVYLPL 299


>UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae
           subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK
          Length = 288

 Score =  125 bits (313), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 7/154 (4%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62
             + ++  + V      GP   T+     +L   +    +    W+ +  ++        
Sbjct: 135 VRLIEQPAQQVLALRHRGP-AATIPHTHRRLRWLIGE--LPGTVWLGMCREDAG--DPGS 189

Query: 63  LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122
             C                  +   +I  G YA              +   +   L  S 
Sbjct: 190 GLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAAFNALYARWLPASG 249

Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQP 154
           YE   +P  E YLN+       ++  ++ V V+P
Sbjct: 250 YEPDDRPALEHYLNSPRNAAPAELRTDLLVPVRP 283


>UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral
           taxon 786 str. D14 RepID=C6IVG7_9BACL
          Length = 153

 Score =  123 bits (310), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDET 58
           M +++++  +   A    VGP+     +  E++  W   +N++    +   + +DNP+ T
Sbjct: 1   MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLNHSAILLGIPWDNPETT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P +  R D  + +      P + + V + EI+GG Y V   +       + W +   + L
Sbjct: 61  PPKNCRYDACLVISQ--DEPLDDDTVHIGEISGGDYLVCTIKHTAQAMQQAWAELMPT-L 117

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
           Q   Y++  +P  E Y   G        E+ V +
Sbjct: 118 QAKGYQIDDRPILERYT--GEMLLKEFCEICVPI 149


>UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM
          Length = 305

 Score =  123 bits (310), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 7   QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCD 66
                TVA   + G + +  +    +L  W  +  +   E + +Y D+P+ TPA+K R D
Sbjct: 161 TLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHGLADGECLFIYLDSPEITPADKCRTD 220

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSLLQDSAYEM 125
             +TVP          G+    + GG YA+    V     +   W +  ++ +  +  E+
Sbjct: 221 ICLTVPDD---TATGNGIEKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSA-VIAAQLEI 276

Query: 126 LPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             +PCFE Y +  A  G  D+   VAV
Sbjct: 277 DDRPCFEQYHHYDAATGKADVSFCVAV 303


>UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium
           hominis ATCC 15826 RepID=C8NA30_9GAMM
          Length = 280

 Score =  123 bits (309), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 10/155 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDETP 59
            +I+      V      G +  ++   F QL   +  +  +P     +  +YYD+P   P
Sbjct: 130 VKIRDIAALPVVALPHHGDYM-SIGASFSQLETLLTLRGHLPAPQARYFGIYYDDPAGCP 188

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             +LR    V + G    P     +    +  G+YAV   R    +  + +   +   L 
Sbjct: 189 TAQLRAAAAVALGGADATP----PLQTLTLAAGRYAVLEHRGAYAELHRAYDWLYRDWLL 244

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +S Y++   PC E YLN+  +    ++   +Y+ +
Sbjct: 245 NSPYQLADAPCLEEYLNDWQQVPPQELRTNIYLPL 279


>UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter
           sp. BAL39 RepID=A6EIJ9_9SPHI
          Length = 309

 Score =  123 bits (308), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVA---VYYDNPDETP 59
            EIK   +  +A    +G   Q     F++LM W     ++         +Y+D+   T 
Sbjct: 157 VEIKTLPQLELAYISHIGDQGQA--HTFQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITA 214

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           +E++R    + +    +       V    +  G+  VA   +  D+F K W + F   L 
Sbjct: 215 SEQVRMSACIVLKEPVSTD---GLVGTMTMPSGKCVVARMELAMDEFGKAWTELF-VWLN 270

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYW--DIEMYVAV 152
            + Y+   + CFE+Y N+ +        +++ + +
Sbjct: 271 RNGYKTTERNCFEIYGNDPSTHPQHHFIVDLCIPI 305


>UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides
           RepID=C6IFE4_9BACE
          Length = 377

 Score =  122 bits (307), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT--VKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
             EIK      +    +   ++     +  + +L+   +     P+  +++++  D+P  
Sbjct: 221 KPEIKVISPIKIFCIEVGEAYKNKLKYRLLWNKLLHHAEQYEADPRYDKFISLSMDDPSI 280

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP EK R    +T+              + +I GG+YAV           K +   +   
Sbjct: 281 TPTEKCRFYLGITLRDDTKARPVPG---IMQIPGGRYAVFRHTGSYSSLHKVYRSIYEEW 337

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
              S Y       FE+Y+N+ +     ++  E+Y+ V  K
Sbjct: 338 FPKSKYHPQSTFSFEMYMNHPSTTETSELLTEIYIPVIRK 377


>UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes
           RepID=C7M7E1_CAPOD
          Length = 289

 Score =  122 bits (307), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETP 59
            +I + E +++    L G +      K +EQL   V S+ +  K    + V YD+P  T 
Sbjct: 132 PKIVELEPKSLIYVALTGEYGTLNYNKAYEQLWGVVKSQKLFTKGIESICVSYDDPKITE 191

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A   R +  + +         S  V    + GG+YAV   +      +  +       + 
Sbjct: 192 ASLQRSEVSLAIHKPAK---PSGEVSCKTLAGGKYAVFFYQGSYTQLSSVYDAAMR-WVV 247

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           DS YE+  +P FE YLN+        +  E+Y+ VQ
Sbjct: 248 DSEYEVRDEPMFEKYLNDCRRTPEGKLKTEIYIPVQ 283


>UniRef50_C5DA82 Transcription activator effector binding n=1 Tax=Geobacillus sp.
           WCH70 RepID=C5DA82_GEOSW
          Length = 160

 Score =  122 bits (306), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 19/166 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM-------WVDSKNIVPKEWV 48
           M Y++ + +   V G         G     + K ++++         W  +   +    +
Sbjct: 1   MKYKVIERDSFQVVGIKREFSLVNGENLVDIPKLWDEVNEDGTVDLLWKLNNGQIKG-VL 59

Query: 49  AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107
            V   N      + +         G     +   G++  E+   ++ V        D   
Sbjct: 60  GVCVTNSGTQSKQVMDYWVATEYDG-----DTPNGLLKFEVPASKWVVFEVHGPMPDAMQ 114

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           K W Q F+  L  S+YE    P  EVY +       +  E+++ V+
Sbjct: 115 KAWNQIFSEWLPSSSYEHAGTPALEVYTDENPLSPDFYSEIWIPVK 160


>UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales
           RepID=A8EWB5_ARCB4
          Length = 292

 Score =  121 bits (305), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
              I +  +         G +++++KK +++L  W+ + +I   + +A+++DNP  TP E
Sbjct: 139 EPSIVKMPEIKGYYIRHKG-YDKSIKKTWQKLQTWIYTNDIKEYKQMALHHDNPIITPLE 197

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
             +    + V            +    I  G YA         D  K     +++ L +S
Sbjct: 198 DCQY-IAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGDVIKLIQWVYHTWLIES 256

Query: 122 AYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAVQ 153
            YE  P P + +Y  N   ++DG + ++ Y+ ++
Sbjct: 257 GYETTPNPSYTIYHKNHFLSDDGEFILDYYLPIR 290


>UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter
           turnerae T7901 RepID=C5BIU8_TERTT
          Length = 313

 Score =  121 bits (304), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
              I +   R +A     G +++++   +++L +W     +  +   A+ + NP   P +
Sbjct: 163 QPVICEVPSRLMAYIRHHG-YDRSIAHTWQKLDLWRFENGLHTQGQFALLHSNPCLVPLK 221

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
             R    V +      P     + +  + GG +A      V  +F     +     +  S
Sbjct: 222 DCRYVACVEIH---KTPLQRSVINVLRLPGGIHARFHLAGVYGEFIPYLSRILQEWVPHS 278

Query: 122 AYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152
              +   P +  Y  N        +D+E+Y+ +
Sbjct: 279 GLRVRTTPIWVAYNKNQFTDSQHEFDLELYIPI 311


>UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus
           coahuilensis m4-4 RepID=UPI0001850B59
          Length = 159

 Score =  121 bits (304), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51
           MNY I +++   V G   V     G   Q +   ++++      + I      +E+V V 
Sbjct: 1   MNYRIVEKDAFQVIGVSKVVSTVNGENHQAIPTFWDEVNESGVDERIAKLAGNQEYVGVC 60

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110
            D     P E+             T  E    +   EI    +AV  +           W
Sbjct: 61  MDFDH--PNERFTYFIGAEDIANVTQTE----LEKREIPRNTWAVFESVGPMPHAIQAVW 114

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            + ++     + Y+    P FE+YL        +  E+++ +
Sbjct: 115 QRIYSEWFPSTGYKHAGGPEFELYLPGDVTQEDYRCEVWIPI 156


>UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
           DSM 17393 RepID=B3CE13_9BACE
          Length = 283

 Score =  121 bits (303), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 11/158 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDE 57
             E+       +A   ++GP+ +  + + G+ +L  ++    +  K   W  + +D+P  
Sbjct: 133 EPEVLLISPMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKLQSKATRWFGISFDDPTI 192

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T  ++ R     +V         S  +    I  G+YAV   +       + +   ++  
Sbjct: 193 TKKKQCRFYACASVAQRIK---PSGAIGTLTIESGKYAVYTYKGSYSGLLRAYTYIYSR- 248

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
             +    +     FE Y+           ++Y+ +Q K
Sbjct: 249 --EKG-RLRNALSFEEYVTWSDNPAKQITKIYIPIQKK 283


>UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4
          Length = 286

 Score =  121 bits (303), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 5/151 (3%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKL 63
           +  + + RT+A   + GP+ +       QL  W  ++ +   EW+ +Y+DNP+ TP  + 
Sbjct: 139 KTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLAQGEWIFIYHDNPEVTPPAQC 198

Query: 64  RCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG-DDFAKPWYQFFNSLLQDSA 122
           R D  VTVP        +  V +  I  G+YA +   +     +   W +     +  + 
Sbjct: 199 RTDIGVTVPAG---TVGAGEVEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGD-IVAAG 254

Query: 123 YEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
                 PCFE+Y +   +    D+    +VQ
Sbjct: 255 LAFGDGPCFELYHSVSNDPLRDDVSFCSSVQ 285


>UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134
           RepID=A1ZNF5_9SPHI
          Length = 469

 Score =  121 bits (303), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 1   MNYEIK--QEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNP 55
           MN +I   + ++  +AG   +G +++     F++LM W   K ++     + + +Y+DNP
Sbjct: 145 MNAQIVITELQEIKLAGVMHIGEFDKA-GNMFQRLMEWGAKKRVLATSDFKAITIYHDNP 203

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + T   KLR  T +T+            +    +  G YAV    +  D+    W     
Sbjct: 204 NVTQTSKLRFSTCITISEDI---NADGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMC- 259

Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
             + ++ YE      FE+Y N+     D  + +++ + ++
Sbjct: 260 IWVIENGYEFRDGDYFEMYHNDHKTHPDQKFILDICIPLE 299


>UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides
           cellulosilyticus DSM 14838 RepID=UPI00019685E3
          Length = 329

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 5   IKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE-TP 59
           I+  E   V    +  P++      K +++L+ +V    I   E        D P   T 
Sbjct: 175 IRVIEPVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGIPDGETEYFTFSRDVPTIITS 234

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+ R    V    +    E S  + +  I GG+YAV             +   +   L 
Sbjct: 235 PEQQRIFVCVNNSDHL---EPSGIIGVQTIEGGEYAVFTMYGAYRQLPDVYTYIYRYWLF 291

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
           +S Y++     FE YLN+  E     +  E+Y+ V  K
Sbjct: 292 NSDYQIRDSMVFEKYLNSPDEVEEDKLMTEIYIPVSKK 329


>UniRef50_O34775 SPBc2 prophage-derived putative transcriptional regulator yosT n=2
           Tax=root RepID=YOST_BACSU
          Length = 149

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV-PKEWVAVYYDNPDET 58
           M   I++  +  +A F  VG +  +  K+  E    W     +      + +  D+P  T
Sbjct: 1   MKITIEELPELRIAYFRNVGEYGGKQNKELMESFKKWAQLNGVFHNSVILGIPQDDPSIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P E+ R D  V +   F + + +    + ++ GG+YAV +     +  ++ W   F+  +
Sbjct: 61  PKEECRYDVGVVLNEDFNVLQPA---QVGKLPGGKYAVFLLDHTKEAVSEFWGNIFSE-I 116

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           + ++  M  +P  E Y +   ++     E+ V +Q
Sbjct: 117 EKNSLTMRGEPIIERYTSQMIDN--HLCEVLVPIQ 149


>UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22
           Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY
          Length = 294

 Score =  120 bits (300), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 6/153 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
             +I +  +R  A    VG + +++K  +  L  W +S+    +    +++ NP     +
Sbjct: 143 EPKITEVPERMAAYVRHVG-YNRSIKNAWLILKAWANSEGRSFEVQFGLHHSNPAWVELD 201

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           K R    + +            V    I GG +AV     V  +            L  S
Sbjct: 202 KCRYVACIAIDKPLKY---RGVVNQMVIPGGLHAVFRLHGVYGELLPQISMVLEKWLPAS 258

Query: 122 AYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152
            +++   P +  Y +N    E   ++++ Y+ +
Sbjct: 259 GFKLRSTPAYVHYHSNHFVNESEAFELDFYLPI 291


>UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae
           RepID=B1HRP5_LYSSC
          Length = 287

 Score =  120 bits (300), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 17/165 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVA 49
           M Y+I +++K  V G         G   + +   ++++        +           + 
Sbjct: 128 MKYKIVEKDKFQVVGVKRTYNCQDGENTREIPLFWQEINESGFDHQLYQLNNGNINGVLG 187

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108
           V   N ++     +             + +  E ++  E+   ++ V        D    
Sbjct: 188 VCVPNTNQGQQGFIDYWIATN-----HVGDVGEDLLTMEVPASKWVVFEVHGPMPDAMQN 242

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            W Q ++     + YE       EVY    A       E+++ ++
Sbjct: 243 TWKQIYSEWFPSNPYEPAGTAELEVYPEEDAYSPDSYSEIWIPIK 287


>UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae
           RepID=YGIV_ECO57
          Length = 160

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP---KEWVAVYYDNPDE 57
           ++  I       VA         + +     + +MW     + P    +   V +D+P  
Sbjct: 6   LDVNIIDFPSIPVAMLPHRCR-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           T  E  R D   +V     +P+N  GV   E+TGG+YAVA      DD +   +      
Sbjct: 65  TAPEAFRFDICGSVSE--PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRHW 122

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIE--MYVAV 152
           L  S  +M   P    Y N         +E  +YV +
Sbjct: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPL 159


>UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas
           salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4
          Length = 302

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 7/151 (4%)

Query: 5   IKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMM-WVDSKNIVPKEWVAVYYDNPDETPAEK 62
           +KQ   R VA    +GP+  +T ++    L+  +   + + P   +++Y+D PD T   +
Sbjct: 153 VKQMPARRVAYMRRMGPYGKETCEQAHRDLLALFASDEAMTPAGTLSLYWDIPDITDETR 212

Query: 63  LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122
            R D  + +            +    I  G YAV      GD     W   F   L    
Sbjct: 213 CRTDICIELGPEIHAGRQ---LTTQTIAAGPYAVCQFIARGDQLVTTWETAFG-WLVSKG 268

Query: 123 YEMLPKPCFEVYLNNGAEDGYWDI-EMYVAV 152
                +PC+E Y      D    + ++ + +
Sbjct: 269 LSCDDRPCYEQYHAGTDPDRDHYVFDICIPL 299


>UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales
           RepID=C6CRY2_PAESJ
          Length = 301

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 1   MNYEIKQEEKRTVAGF----HLVGPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAV 50
           M Y+I  +    V G+       G   + +   +++ +     KNI           + +
Sbjct: 134 MEYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNRVHKESPVELGI 193

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD----- 105
            Y+      ++       +    +  +    EG++  E  G +YAV     V  +     
Sbjct: 194 CYNFD--MGSDSFSYLIGMEAESFDGVE--GEGLVCREFDGAEYAVFTTPKVPREQFSSS 249

Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155
               W   F      S YE    P FE+Y      E     +++Y+ ++ K
Sbjct: 250 IQNTWMTVFGEWFPHSGYEHAGTPEFELYDERSNHELSEIQMDIYIPIKKK 300


>UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus
           RepID=B9J2X1_BACCQ
          Length = 159

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M   IK      VA     G + +  +  + +L+ W     + P E  ++ +  DNP+  
Sbjct: 1   MKVIIKNLPSLEVAFIRRTGSYFEP-QDHWGKLLNWSIENKLYPPEQSFIGISLDNPELV 59

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            +   R D  VT+P  F   +  E V    + GG YA+          ++ +   +   L
Sbjct: 60  ASHMCRHDACVTIPKNFEKEQ-HEDVQFKSVDGGLYALYEFYDKPHKLSEVYRYMYAVWL 118

Query: 119 QDSAYEML-PKPCFEVYLNNGAED--GYWDIEMYVAVQP 154
            +S Y     +   E  +NN AED  G   ++++V+++ 
Sbjct: 119 PNSEYSADYDRDNLEFCMNNVAEDLEGKLKVDLFVSIKK 157


>UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA
          Length = 306

 Score =  115 bits (288), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%)

Query: 2   NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
              ++ +    + G    + G       +   V K +++L    +S ++     + V   
Sbjct: 140 EVRVETKPAFILKGMRGEITGLFSLDPNFADVVPKLWQRLDAEANSTSLSFGHCLGVVDV 199

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPE----NSEGVILTEITGGQYAVAVARVVGDDFAKP 109
                    L     + +     +P      SE + +  +    YA    +   D   + 
Sbjct: 200 TKVAFDGSNLFYWAGIELRSDIAMPALPSVVSEQLAILNVPKQTYAAVKHKGPIDRLPQT 259

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYW-DIEMYVAV 152
              F    L  S Y  +     EVY ++   D    ++E +V +
Sbjct: 260 LEWFILHWLPTSGYRGVDGYELEVYPDDYQADAAHAEMEYWVPI 303


>UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseudomonas aeruginosa
           RepID=B7V1U1_PSEA8
          Length = 270

 Score =  114 bits (287), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 8/155 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59
           M+  I +    +V G    G     T+ + +E+ +       I  K    V Y    + P
Sbjct: 120 MHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIP--REHEIAGKHDPEVSYGICAQQP 177

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             +        V   + +PE   G++  ++   +YAV   +      A+ +   ++ LL 
Sbjct: 178 NGEFHYVAGFEVQEGWPVPE---GMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLA 234

Query: 120 DSAYEMLPKPCFEVYLN--NGAEDGYWDIEMYVAV 152
           +   E      FE Y     G  D    +++Y+ +
Sbjct: 235 ERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPI 269


>UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria
           RepID=Q13JQ4_BURXL
          Length = 281

 Score =  114 bits (287), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 10/155 (6%)

Query: 3   YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59
              +  +   VAG            +   +++   +       V      V Y+      
Sbjct: 132 PRFEDGKAFLVAGLNERYTNETCAAIPSQWQRFGDYFGKVPGQVGNVAYGVCYN---ADD 188

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
              +     V V  +  LP     +    I+  +YAV   R       + W   +N  L 
Sbjct: 189 NGNIDYLCGVEVSDFSALPA---ELSRLRISPQRYAVFSHREHVSTIRRTWNTIWNQWLP 245

Query: 120 DSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQ 153
            S +     P FE Y        G   +E+++ ++
Sbjct: 246 ASGHIPADAPNFERYDAKFDPVSGMGGLEIWLPLK 280


>UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseobacter sp.
           SK209-2-6 RepID=A4ERY7_9RHOB
          Length = 232

 Score =  113 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
           +  I++ E   VA     GP    +    ++ ++W  +K + P   E   V++ +P  T 
Sbjct: 80  DVTIRETETIPVAIIEHRGPPA-GIGATIQRFILWRKAKGLSPLNSETFNVFHSDPQSTD 138

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             + R D  V       + E+ +GV+   I GG+ AV       DD        +   L 
Sbjct: 139 PREYRLDICVATDRG--IDEDEQGVVSGVIPGGRCAVLRVVGNSDDLETASLYLYRDWLP 196

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWD--IEMYVAVQ 153
           +S  E    P +   +    E    +    +++ ++
Sbjct: 197 ESGEETRDFPLYCQRIAFFPEVSEQEAVAGLFLPLK 232


>UniRef50_A6LWY8 Transcription activator, effector binding n=5 Tax=Clostridium
           RepID=A6LWY8_CLOB8
          Length = 151

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           M+  I+   +  +A    VGP+     +  EQL  W    ++  +    + +  DNP+ T
Sbjct: 1   MDINIEMIPEYKIAYIRKVGPYGLENVQVMEQLKSWAKENSLFNERSIIIGITQDNPEIT 60

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
                R D  + V   F     +  +  T   GG+Y V       D   K W + F   L
Sbjct: 61  EPADCRYDACLVVSDEFDFESKNINIGKTI--GGKYCVFKINHTVDAIQKAWIEIFLE-L 117

Query: 119 QDSAYEMLPK-PCFEVYLNNGAEDGYWDIEMYVAV 152
               Y++  K    E Y            E+ V +
Sbjct: 118 SKRNYKIDDKSKIIERYTMQMI--SNHYCEICVPI 150


>UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus
           RepID=Q5WGK8_BACSK
          Length = 280

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 1   MNYEIKQEEKRTVAG--FHLV---GPWEQTVKKGFEQLMMWVDSKNIV----PKEWVAVY 51
           M+Y+I +++  TV G         G   + +   + +      SK +     P   + + 
Sbjct: 122 MDYKIVEKDAFTVVGKSIRTTTIGGENNRKIAAFWNESNRNGLSKQLAKNCGPLGLLGIC 181

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110
            D       E L               +        +I    +A+        +   K W
Sbjct: 182 IDFDK--QQENLTYLIAAE----KNSDQIPVDWETRQIPAATWAIFPVHGAMPNAMPKVW 235

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQP 154
            + F+     + YE    P  EVY+++       +  E++V V+ 
Sbjct: 236 ERIFSEWFPATGYEHSGGPEMEVYVSDADPYSKDYYSEIWVPVKK 280


>UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides
           cellulosilyticus DSM 14838 RepID=UPI00019685A1
          Length = 377

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 9/157 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKG--FEQLMMW--VDSKNIVPKEWVAVYYDNPDE 57
             +IK+          +   +         ++QL+ +  V  +N     +V++  DNP  
Sbjct: 222 EAKIKRINTLKAVCIEVGDTFRDKYAYTTIWKQLLHYKAVHLQNGPGNRFVSISQDNPWV 281

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E+ R    V V G          ++L EI GG YAV   +    D  + +   +N  
Sbjct: 282 TPMEQRRFYIGVLVEGRANSE---GKLLLREIPGGMYAVFRYKGSYSDLPEFYKTIYNQW 338

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
              S Y       FEVYLN   E    ++  E+Y+ +
Sbjct: 339 FPYSMYHQKRPLTFEVYLNAPDETPVEELLTEIYIPI 375


>UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas
           RepID=A4XZN4_PSEMY
          Length = 277

 Score =  113 bits (282), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 10/155 (6%)

Query: 3   YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59
                 E+  + G          Q +   +++   ++         E   V   NP+   
Sbjct: 128 PRFVDAEELLIVGLSERFNVETAQGIAALWQRFGPYIGRIPGQQGSETFGVCC-NPE--D 184

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
                    V V     +P    G+ L  +   +YAV +         + +   F   L 
Sbjct: 185 DGSFEYIAGVLVNRAAEVPA---GLTLQRLAAHRYAVFLHEGHISSIHETFNAIFQHWLP 241

Query: 120 DSAYEMLPKPCFEVYLNNGAED-GYWDIEMYVAVQ 153
            +  +    P FE Y  +     G   +E++V ++
Sbjct: 242 TAGVQTAAAPEFERYSEDFDPMAGTGRVEIWVPLR 276


>UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=root
           RepID=Q187G0_CLOD6
          Length = 288

 Score =  112 bits (281), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSK---NIVPKEWVAVYYD---- 53
           MN  I++++  TVAG +            +++L   V  +   N+   E V V +D    
Sbjct: 127 MNIRIQKKKAFTVAGVNQQNINSSICASLWQKLFSKVSHEEMLNLGTGEVVGVCHDILSL 186

Query: 54  -NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWY 111
            N D   +  +       V           G+ + EI   +YAV        +     W 
Sbjct: 187 DNHDVLDSNTINYMAGYIVTDVDKARSM--GLDILEIGETEYAVVELTGSVPECIHNGWK 244

Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
                   +  Y    KP FE Y         + +E+++ V
Sbjct: 245 YAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPV 285


>UniRef50_A0M275 Effector binding transcriptional activator protein n=1 Tax=Gramella
           forsetii KT0803 RepID=A0M275_GRAFK
          Length = 163

 Score =  111 bits (279), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 63/163 (38%), Gaps = 12/163 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDS------KNIVPKEWVAVYYDN 54
             +I++ + + + G  +            + + M    +      +++   +     +  
Sbjct: 4   EPKIEELKSKKLIGICITTSLADDKTSLLWNRFMRLRGAIERNKGESLYSVQEYGENFMK 63

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
            +     K        V  +  +P+   G+   EI  G+YAV + +    +FA+     F
Sbjct: 64  GEFDTQSKFNKWAATEVSDFKEIPK---GLEKLEIPAGKYAVFIHKGTASEFAETSNYIF 120

Query: 115 NSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQPK 155
           N  L +S Y++  +P FEV   +  G E+     ++++ +  K
Sbjct: 121 NEWLPNSDYDLDDRPHFEVLGADYKGPENPDSKEDIWIPITAK 163


>UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum
           rubrum ATCC 11170 RepID=Q2RP02_RHORT
          Length = 160

 Score =  111 bits (278), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 8/149 (5%)

Query: 8   EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDETPAEKLRC 65
                 A    +GP+ +   + F ++  W  S+ ++  E   + + YD+P  TPAE LR 
Sbjct: 9   LPAMIFASLRHIGPYGEA-GETFRKITDWAVSEGVMTPETQILGLSYDDPKTTPAEILRY 67

Query: 66  DTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM 125
           D  VT+     LP    G+ L  +    + +   +   +   + + + + +L +      
Sbjct: 68  DACVTLKTPVALP---PGMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPTLVP 124

Query: 126 LPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +     E+Y+N+ A     D+  E+ VAV
Sbjct: 125 IATGAIEIYVNDPATTAPADLITELGVAV 153


>UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria
           RepID=C7RI56_ANAPD
          Length = 282

 Score =  111 bits (277), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 7/156 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV---PKEWVAVYYDNPDE 57
           M+ +I++++   VAG            K +++L+  V  +        +   V YD    
Sbjct: 127 MDIKIEKKKAFKVAGIKSDVTKSSNFPKVWDRLVEKVPREKFEEFGSGQIFGVGYD-YIM 185

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNS 116
              +         +       E   G+    I   +YA+   +        + W    + 
Sbjct: 186 DEEDSFIYLAGFDLTDEVKAKEL--GLDTLSIPEKEYAIVSLQGPIPKCIHEGWKYIISY 243

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
                 Y     P FEVY +       + +E++V +
Sbjct: 244 FFPKEGYRHDESPDFEVYGDGDPNSEDYKMELWVPI 279


>UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium
           butyricum RepID=C4IM74_CLOBU
          Length = 277

 Score =  110 bits (275), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 7/152 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
              I+    + V     +G + + ++K +E+              ++   +D+P  T A+
Sbjct: 133 KISIEIINDQFVIYERRIGNYNELIEK-WEEFTDKYKKYIDENTVFLERTFDDPSITSAD 191

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           K   D  +TV     +           I GG++AV   +   +     +   F       
Sbjct: 192 KCIYDICMTVDKNCDVENTC------VIPGGKFAVYHYKGFPEQIYTAYQNMFQVWFPVV 245

Query: 122 AYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
              +  +  F++Y     +  Y ++++ + ++
Sbjct: 246 KKRIDNRYGFDIYNKIDCDSMYMELDICIPIK 277


>UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IEN8_9CLOT
          Length = 279

 Score =  110 bits (275), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 11/159 (6%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDE 57
           M+Y+I++++   V         E    ++   + +       + +       +    P E
Sbjct: 128 MDYKIEKKDSFRVVTKTRKFTEENRIISIPMFWSEYCEDGLHQKV--CGMFGICL--PGE 183

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNS 116
              ++              +PE   G I  +I    +AV        D     W + ++ 
Sbjct: 184 PDCKEFEYGIGCEEKYVKQIPE---GFITIDIPSYTWAVFKCVGAMPDSIQNMWRRIYSE 240

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
            L  S YE++P    E+Y     +   +  E+++ V  K
Sbjct: 241 WLPQSKYELIPGYDIELYTEGDIKSEDYISEIWIPVIEK 279


>UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides
           RepID=D0TT37_9BACE
          Length = 383

 Score =  110 bits (275), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 9/161 (5%)

Query: 2   NYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW--VAVYYDNPDE 57
              IK+     +A            +    ++QL+ + ++  +  K    V++  D P  
Sbjct: 225 ELSIKKVHNMRIAYLKLERTNNISHSFSLLWKQLLQFSENYELPSKGCQYVSLTLDYPLI 284

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           TP E  R    VT+P  F  P+   G  + EI+ G+YA+   + +  +  + +   +   
Sbjct: 285 TPEEHSRFMVGVTLPQSFETPK---GFGMYEISSGEYAIFRFKGLYHELNRVYRHIYLDW 341

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPKH 156
           L  S Y +     FE Y+N   +    ++   +Y+ V  K 
Sbjct: 342 LPTSDYTLREPFTFETYINTPEKTPASELITAIYIPVTRKE 382


>UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM
           12442 RepID=C3BTE5_9BACI
          Length = 303

 Score =  110 bits (275), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDETPA 60
             +K      VA     G +E    + F +L+ W   K I   +     V +D P  TP 
Sbjct: 149 VTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRNDCFLLGVGHDAPTITPK 208

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-DFAKPWYQFFNSLLQ 119
           E LR D  + V   F        +   ++ GGQ+A          +    + + +  +  
Sbjct: 209 ELLRFDCCIEVDQPFHSE---GKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQH 265

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYW--DIEMYVAVQPK 155
           +   E +  P  E+Y        Y     ++YV ++ K
Sbjct: 266 NKNIEFVGLPVVEIYRTTTINPSYKLNQTDIYVPIRVK 303


>UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax=Hyphomicrobium
           denitrificans ATCC 51888 RepID=C6QIW6_9RHIZ
          Length = 174

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 6/148 (4%)

Query: 10  KRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDETPAEKLRCDT 67
              +      G +   + K +E+L   +D   +         + +DNP +  ++  R D 
Sbjct: 13  PTRLIYVSATGRYSDVIPKVWERLFRQLDDSGLYESIGRGYGMAHDNPLDVGSKNCRYDA 72

Query: 68  VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML- 126
            V +        +     +T +  G YA        D         +             
Sbjct: 73  CVEIRSGIE-ERSLPEFGITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQ 131

Query: 127 PKPCFEVYLNNGAEDGYWDI--EMYVAV 152
            +P   +Y++N       D+  ++ V V
Sbjct: 132 NRPVVSIYMDNPNNYADQDLRSDICVPV 159



 Score = 41.8 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 5   IKQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
           I        A   L G ++Q   TV+  + +            +  V++Y DNP+    +
Sbjct: 90  ITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQNRPVVSIYMDNPNNYADQ 149

Query: 62  KLRCDTVVTVPGYFTL 77
            LR D  V V      
Sbjct: 150 DLRSDICVPVSTVEET 165


>UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP
          Length = 280

 Score =  109 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 56/158 (35%), Gaps = 12/158 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIV--PKEWVAVYYDNPD 56
           +  E+ + +   +    + G + +     + +  L+ ++     +     ++ + +D+P+
Sbjct: 130 LEVEVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQALSEDTRFIGLSFDDPN 189

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            T  ++ R     +V         S       +  G+YAV   +       + +      
Sbjct: 190 VTHPDQCRFYACASVGKEII---PSGMFGTIRLQKGKYAVYTLKGSYAGLQELYNTINID 246

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDI-EMYVAVQ 153
                 Y       FE Y++   ED    + ++Y+ ++
Sbjct: 247 F----NYTKRHGMAFEEYVSYSEEDDDTQVTKIYIPIK 280


>UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE
          Length = 297

 Score =  108 bits (271), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 12/160 (7%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQ-----LMMWVDSKNIVP--KEWVAVYYDNP 55
           Y I + E   V     +G ++      FE      L  +    +++P  +++  + YD+ 
Sbjct: 138 YRIVESETIPVLFLSYIGNYDTCSTVAFETYTWDCLYEYAKENSLLPDKEDYWGIAYDDT 197

Query: 56  DETPAEKLRCDTVVTVP-GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
           D T  EK R    + +  G  T P  +  +   ++  G YAV V +         +    
Sbjct: 198 DITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAVYVHQGDYALLDAFYETIL 257

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
              L    Y +   P  E YLN+  +    ++  E+++ +
Sbjct: 258 KQ-LPQF-YSLGETPILEHYLNSPTDTDVKELLTEVWIPI 295


>UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax=Alkaliphilus
           oremlandii OhILAs RepID=A8MKC5_ALKOO
          Length = 149

 Score =  108 bits (271), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59
           M  ++   +     G    G      + + +E             K        + D   
Sbjct: 1   MEGKLFNIQGFKAVGISYFGDNANGEIPRLWEAFNQQYKDIKNKSKSMFYYGICDSDMDA 60

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
             +      V V  +  +PEN   +    +  G+Y V        D  + +   F+  L 
Sbjct: 61  QGRFHYTACVEVDHFEDIPEN---MEAKAVPEGRYLVYTYSGDIKDLGEFYGNIFSKWLP 117

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            S YEM  +P  E+Y     ++G  + ++Y+ V+
Sbjct: 118 ASEYEMDYRPQLELYDERFMQNG--EFDIYIPVK 149


>UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseudomonas entomophila
           L48 RepID=Q1I6P7_PSEE4
          Length = 165

 Score =  108 bits (271), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 10/154 (6%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQ--TVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPA 60
             +      +AG      + +   +K  +++   W+         +   V + NPD    
Sbjct: 16  RFEDGRTLHLAGLSNRYDFSRLAELKLLWQRFAPWLGRVPGQHGHDSYGVCH-NPDG--Q 72

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
                   V V G  TLPE   G     +    YAV   R   +     +   F   L  
Sbjct: 73  GAFDYLAGVEVTGAATLPE---GFTTLVLAPQHYAVFEHRGSLECIKTTFDAIFTQWLPA 129

Query: 121 SAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAVQ 153
           S         FE Y            +E+++ ++
Sbjct: 130 SGKRQADAAVFERYPAGYDPTAPQALMEIWIPLE 163


>UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786
           str. D14 RepID=C6J7H0_9BACL
          Length = 301

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 20/168 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLM--MWVD--SKNIVPKEWVAVY 51
           M Y I+Q   + + GF +      G   + +   +++ M   W       + P   + V 
Sbjct: 135 MQYRIEQIPAKRILGFAIQTTTEDGQNHKDIPAFWQKYMHEQWGSRVPGKLHPNVELGVC 194

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVAR--VVGD---DF 106
                       R      V     +    EG+    +    YA+         D     
Sbjct: 195 T---ALDEDGTFRYIIGFEVDETTEV---QEGLTEYRVPAQTYAIFTTPPAGEADFSSSI 248

Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
            + W + F S    S YE +  P FE Y           I++Y+ VQP
Sbjct: 249 QQTWDEIFTSWFPTSGYEQVAAPDFEWYDERCWPKEGKQIDIYIPVQP 296


>UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL
          Length = 290

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 13/164 (7%)

Query: 2   NYEIKQEEKRTVAGF--------HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
              I + E   V G          L   + Q V + + +L   V+  +    +++ V   
Sbjct: 124 EVRIDEREPFLVKGMTSEISGLFSLTQDFAQKVPQLWSRLEGEVEIPDANMLQFIGVVDL 183

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENS----EGVILTEITGGQYAVAVARVVGDDFAKP 109
                    +     V +    ++P+      + + +  I    YAV   R   +     
Sbjct: 184 TQSCFDGTNIYYWAGVELHDEISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPIEHLPHT 243

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDG-YWDIEMYVAV 152
              F  + L +S Y  +     E+Y           ++E +V +
Sbjct: 244 LSWFVLNWLPNSGYRGVDGYELEMYPFGYQAHASDAEMEYWVPI 287


>UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=Methanospirillum
           hungatei JF-1 RepID=Q2FQG5_METHJ
          Length = 279

 Score =  108 bits (270), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 12/147 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD--SKNI----VPKEWVAVYYDNP 55
              +K  E   V      G +E+ + K    L  +     + +    +   ++ +Y+D  
Sbjct: 127 EPTLKDIESLRVLSIRDKGTYEEVIPKLIGTLCQYFSSPQRGLEQVSITGPFMTIYHDG- 185

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                 +   D  V VP    LP+   G+ +  + GG++A A+ +    D  + W + + 
Sbjct: 186 ---EYRESDADVEVAVPVTGRLPDQIPGITIRTMPGGRFASAIHKGPYQDAHESWGKLY- 241

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDG 142
                  YE    PC + YLN+  +  
Sbjct: 242 EWTAKQGYEPK-APCRDNYLNDPDDVP 267


>UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio
           coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR
          Length = 284

 Score =  108 bits (270), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 6/158 (3%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ-TVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDET 58
           M  EI  +    + G       E  ++ + +     + D+  N V  E+  +Y       
Sbjct: 129 MEPEIITQPAIKLVGIANQYTDEDLSLPRLWSGFAPYRDTIANRVGDEFFGIY---ESYE 185

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            AE+      +         +  EG+I  E+    YA    +       +     + S L
Sbjct: 186 EAEEGTTFVYICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLRYIWGSWL 245

Query: 119 QDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAVQPK 155
             SAYE   KP FE+Y     + D    + + + V+ K
Sbjct: 246 PKSAYEYEEKPDFELYPAGFNDADPENKLYLNIPVRKK 283


>UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium
           botulinum RepID=B2TL55_CLOBB
          Length = 282

 Score =  108 bits (269), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 20/165 (12%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM-----WVDSKNIVPKEWVAV 50
           MNY+I ++E   V G         G   + V + +   M      W+ SK +     + +
Sbjct: 127 MNYKIVEKESFRVVGKQTRITMVDGENFEQVPEFWNNCMKDGSYNWICSK-VGKLGVLGI 185

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
             D       ++      V            +G +   I    +A+  +     D     
Sbjct: 186 CKDFGK----DEFNYMIGVE----EIKDSIPKGYVSATIPAATWAIFESSGALPDAIQDL 237

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
             + F   L  + YE    P  E+Y         +  E+++ ++ 
Sbjct: 238 TRRIFTEWLPSTGYEHACAPELEIYPEGDIYSSDYKCEIWIPIKK 282


>UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria
           RepID=A6UD97_SINMW
          Length = 279

 Score =  108 bits (269), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 10/156 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPWE--QTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59
              ++     +AG      +   + +   +++   +  +           V   +     
Sbjct: 128 PRFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFGNIPGQRGNTAYGVCTQSDG--E 185

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A + R      +     LP    G     +   +YA+ V R    + A   +  F +   
Sbjct: 186 AGRFRYMAAAEIRDNEALPA---GFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTWFP 242

Query: 120 DSAYEMLPKPC-FEVYLNN-GAEDGYWDIEMYVAVQ 153
           +S Y     P   E Y        G   +EM+V ++
Sbjct: 243 ESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLK 278


>UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 Tax=Clostridium
           acetobutylicum RepID=Q97LX8_CLOAB
          Length = 288

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 16/167 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM----WVDSKNIVPKEWVAVY 51
           MNY+I+ ++   +AG         G   + + + ++++       +  KN      + V 
Sbjct: 128 MNYKIETKKSFKIAGVSKRISTKEGNNFKIIPEFWDEVKKSGQCEIIEKNAGKLGVMGVC 187

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110
            +   E   ++      V         E  +  ++ E+    +AV  +     D      
Sbjct: 188 TNFDCEY--QEFDYLIAVE----GDKIEGLDNYVVIEVPELSFAVFESIGPMPDALQDVT 241

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157
            + F+     + YE    P  EVYL    +D  +  E++V V  K  
Sbjct: 242 RRIFSEWFPATKYEEAEGPEIEVYLPGNPQDKDYRAEIWVPVVEKRK 288


>UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria
           RepID=B0SZN8_CAUSK
          Length = 296

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 5/155 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
              +++     VA F   G   +T+    ++ + W  +  + P+      +++       
Sbjct: 144 QVALREVAPTRVAIFEHRGD-PETLDATIQRFIAWRKAAGLSPRTNPTFNIWHSERRPPD 202

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
                 D  V V     +  +SE V   EI GG+ AV        +        +   L 
Sbjct: 203 PADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTHNLEPAALYLYRDWLP 262

Query: 120 DSAYEMLPKPCF-EVYLNNGAEDGYWDIEMYVAVQ 153
            S  EM   P + + +  +  E G    E+++ ++
Sbjct: 263 ASGEEMRDFPIYCQRFFLDAPEQGTAA-ELFLPLK 296



 Score = 52.2 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 80  NSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN--N 137
             + V L E+   + A+   R   +       +F     + +       P F ++ +   
Sbjct: 141 TPDQVALREVAPTRVAIFEHRGDPETLDATIQRFIA-WRKAAGLSPRTNPTFNIWHSERR 199

Query: 138 GAEDGYWDIEMYVAV 152
             +   + +++ V V
Sbjct: 200 PPDPADYSMDLCVGV 214


>UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium
           RepID=A5HZP6_CLOBH
          Length = 278

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 7/152 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
              I+      V     +G +   +   +   M    +        +   YD+P  T  E
Sbjct: 134 KIIIENLADFKVIYERYIGNYID-IGDNWYSFMERYKTYIKPDTLLIEKSYDDPSITELE 192

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           K   D  +TV     L        +T I GG++AV        D    +   FN  L  S
Sbjct: 193 KCIYDLCITVGEDVELEN------VTTIKGGKFAVYRFNGYIHDIFVTFQGVFNIWLPRS 246

Query: 122 AYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            Y+M  +    +Y N   ++ +  +++ +A++
Sbjct: 247 GYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK 278


>UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria
           RepID=B2TBR6_BURPP
          Length = 297

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 6/155 (3%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVD-SKNIVPKEWVAVYYDNPDETPAE 61
            E+ +     V      GP   T+ + F  LM  +   +N V  + V +   +P     +
Sbjct: 145 VELTEIAPFDVLSLRHDGPVA-TIGQTFRSLMTMLRCDENAVMDQRVGICVRDPAV--KD 201

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
                  +         E S+ V    + GG YAV          +  +   +   L  S
Sbjct: 202 SFSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLIGPYALISPTFRALYGGWLPQS 261

Query: 122 AYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQP 154
            Y    +P  E+Y              ++ + ++ 
Sbjct: 262 GYLRDRRPALELYRLPLVAGLQQTCVTDLMIPIRK 296


>UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus
           halodurans RepID=Q9K766_BACHD
          Length = 297

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 19/169 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVD----SKNIVPKEWVAVY 51
           M  +   +    + G+ L      G   + + + ++  +           +     + + 
Sbjct: 130 MEPKFVTKPAFHIIGYELKTKNADGQNNKDIPEFWQHYLKNKLGCTIPNPLHKHVELGIC 189

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-----F 106
            +        +      + V      PE   G++       +YAV       ++      
Sbjct: 190 TEF--NPETGEFVYVIGMEVEKGTKAPE---GMVYKSFPELEYAVFTTPKANEESFTSSI 244

Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
              W   F      S YE      FE+Y          ++++Y+ V+ +
Sbjct: 245 QSTWNYIFTEWFPQSDYEHNGVVEFELYDERCHGTENIEMDIYIPVKKR 293


>UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas
           sp. MED121 RepID=A3Y825_9GAMM
          Length = 289

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 6/157 (3%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDETP 59
           N E+ +    ++A     G   Q + +  +  + W  ++ + P       + Y +P    
Sbjct: 132 NVELIEFHTLSIAYLTHKGHPNQ-LHRSIQTFIDWRRARALPPHKSRTFNLLYHDPKRVE 190

Query: 60  AEKLRCDTVVTVPGYFTLPENSEG-VILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            E  R D             + +  + + +I  G+YA    +   D   +  Y  FN  L
Sbjct: 191 PEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQLDQAIYYLFNLWL 250

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAVQ 153
           + S  ++   P F   ++   +        ++Y+A++
Sbjct: 251 EQSGEKLRDFPLFIERVSFFPDVAANKAISDIYLALE 287


>UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=1 Tax=Hahella
           chejuensis KCTC 2396 RepID=Q2SHR5_HAHCH
          Length = 278

 Score =  106 bits (265), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 12/156 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVG-PWEQTVKKGFEQLMMWVDS-KNIVPKEW-VAVYYDNPDET 58
             ++K+    T+ G          ++   + + +   D  +  V  E    +        
Sbjct: 128 EPQVKELPAFTLIGMEYRSSDVRDSIPMLWGRYLPREDEIRGRVNHEVSYGLCL----PL 183

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
              + R    V V     +PE   G++   +   +YAV             + +  +  L
Sbjct: 184 EDGEFRYIAGVEVEKGTPVPE---GMVSVTVAAARYAVLTHTGPVAGLNATFRKACSRDL 240

Query: 119 QDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152
            +S  E +  P FE+Y     G +     +++Y+++
Sbjct: 241 PESGLERVDGPDFELYDRRFMGPDSAESQVDIYLSI 276


>UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium
           RepID=C6PVM8_9CLOT
          Length = 277

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 7/149 (4%)

Query: 5   IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLR 64
           I++ +   V     +G + + + K +                 +  +YD+P  T  ++  
Sbjct: 136 IQELDDFVVIYERYIGNYIE-LGKNWYDFTEKYKDYFKEDTLLIERFYDDPSITSLDQCL 194

Query: 65  CDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYE 124
            D  +TV    +L        +T I GG++A+     +  D    +   FN  L DS YE
Sbjct: 195 YDICMTVDKNCSLDN------VTTIQGGKFALCRFDGLIQDIFAAFQGVFNIWLPDSGYE 248

Query: 125 MLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           M  +   ++Y     E  +  +++ + ++
Sbjct: 249 MDERYGLDIYRAIDWESMHVVMDLCIPIK 277


>UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp.
           H160 RepID=B5WT45_9BURK
          Length = 323

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60
           + E+ +     V      GP   T+ + F  LM  +        ++ V +   +   T A
Sbjct: 154 SVEVVELAPLDVLCQRHDGPVG-TIAQTFRTLMTTLRCNQNPQLQQRVGICGRD--ATVA 210

Query: 61  EKLRCDTVVTVPGYFT----------------LPENSEGVILTEITGGQYAVAVARVVGD 104
              R    +                       + E   GV+   + GG YAV       +
Sbjct: 211 SGFRYHAGIIAASQTAFSRAIERLDESAQQSCVTEPPPGVVPLRLEGGLYAVHRLVGPYE 270

Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDG--YWDIEMYVAV 152
             +  +   ++  L  S Y    +P  E+Y +            ++ + +
Sbjct: 271 LISPTFRALYSGWLPRSGYRRDQRPGLELYRSLPDRGALQPCITDLLIPI 320


>UniRef50_A9KRS9 Transcription activator effector binding n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KRS9_CLOPH
          Length = 160

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLVG-----PWEQTVKKGFEQLMM------WVDSKNIVPKEWVA 49
           M Y I++ +   +AG             + + K +E+          V+      +    
Sbjct: 1   MKYRIEKMDGFRLAGISREITINNRENFKLIPKMWEEFNSDGTCDKIVNINGRKQEAMYG 60

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKP 109
           V YD       E+ R    +            EG  + E+    +             + 
Sbjct: 61  VCYDFH--FAEERFRYMIAIKSEDQIA-----EGYEVLEVPEFTWVKFECNG-VTGIQET 112

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
           + +        S YE    P  E Y     +   +  E++V ++P
Sbjct: 113 FKRMNTEWFLTSGYEHEEGPEIEFYPIGDVDAPDYVCEVWVPIRP 157


>UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas
           RepID=B0RPV2_XANCB
          Length = 319

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYDNPDET 58
           +   ++  E   V      G ++  + +GF ++  W +   ++      + V   +  + 
Sbjct: 164 LQVTVQWLEPLEVVVLRQRGAFDD-LDRGFGRIAAWAERAGVIEHLHALIGVPLSDHRDV 222

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           PA++   +  +        P     + +  +  G +AV               +     L
Sbjct: 223 PAQQHLFECGIAFATAVAPPAP---LHVRVLGEGAHAVLRHTGSYAGLEDALDRLLADWL 279

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
             S + +   P   +YL++       D+  ++ V V
Sbjct: 280 PGSGHALRDAPLHYLYLDDPETVAEADLRADIRVPV 315


>UniRef50_P96662 Uncharacterized HTH-type transcriptional regulator ydeE n=105
           Tax=Firmicutes RepID=YDEE_BACSU
          Length = 290

 Score =  104 bits (261), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 18/168 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW-----EQTVKKGFEQLMMWVDSK-----NIVPKEWVAV 50
           MNY I+++E   + G     P         +   +E L     +K     N+ P   ++ 
Sbjct: 128 MNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVAPSGLISA 187

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
             +  +    E    D  +        P+N       E+    +AV  +     D   + 
Sbjct: 188 STNFSEGRTEENGELDHYIGAATTKRCPDN---FSRLEVPASTWAVFESIGPFPDTLQEV 244

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAVQPK 155
           W + ++     S YE +  P  E+  N   +     +  E+++ +  K
Sbjct: 245 WGRIYSEWFPSSNYEQIEGP--EILWNEHKDVTSPSFKSEIWIPITKK 290


>UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus
           flavefaciens FD-1 RepID=UPI0001C36EC6
          Length = 292

 Score =  104 bits (260), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 16/165 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQ------TVKKGFEQLMMWVDSKNIVP-----KEWVA 49
           MNY I ++   TV     V   ++      TV   + +         +V      +    
Sbjct: 128 MNYRIIEKPAFTVIEKAEVHRLDENDVVSSTVPDVWAKAGADGTIAQLVGMASDREFIYG 187

Query: 50  VYYDNPDET-PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107
           + Y N  ET   +                PE   G  ++ I    +     +    +   
Sbjct: 188 ICYGNGKETYDEDTFEYSIAAICAEDTVAPE---GFRISHIPARTWLAVECQGTCPETVQ 244

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
           + W +   S    S Y    +   EVY +       +  E++V V
Sbjct: 245 QQWREMCASFFPSSGYTPTYEMDIEVYPSGDPSAPDYKFEIWVPV 289


>UniRef50_A6M032 Transcription activator, effector binding n=19 Tax=Bacteria
           RepID=A6M032_CLOB8
          Length = 285

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDE 57
           M+Y+I +++  TV G   V  +E     +   + +   +   K         +  D  + 
Sbjct: 128 MDYKIVEKDSFTVMGVSKVFKYENAFAEIPPFWTE--HYEAGKGKFVCGMYGISID--ES 183

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNS 116
             +++              +P    G +   I    +AV   +            + F+ 
Sbjct: 184 MGSDEFEYLIADNYNPSIEIPN---GFVTKIIPKHTWAVFACKGAMPKSLQDMNRKIFSE 240

Query: 117 LLQD-SAYEMLPKPCFEVYLN-----NGAEDGYWDIEMYVAVQPK 155
            L +   YE+      E+Y +      G +D  +  E+++ V+ K
Sbjct: 241 WLPNCKDYEIAAGYNIEMYTDIADYPKGNQDENYYSEIWIPVKKK 285


>UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6D8X3_9VIBR
          Length = 295

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 45/162 (27%), Gaps = 17/162 (10%)

Query: 3   YEIKQEEKRTVAGFHLVGP----------WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYY 52
             I+ + +    G    GP          + Q V   +          +I P  +     
Sbjct: 138 VRIESKPETQFWGV--YGPIDSIYAANPQFSQQVLDIWGTFTQIALQHSIAPNHFYYGIV 195

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
           D     P  +L        P +  + +    +    I    YAV         F K    
Sbjct: 196 DTVRVLPNSQLVYWAASDNPAFSQISQ----LEHVTIPAQMYAVITHVGPAATFPKTLEW 251

Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGA-EDGYWDIEMYVAVQ 153
              S L  S Y  L     E Y  +   E     +E ++ +Q
Sbjct: 252 VLQSWLPSSGYMGLEGFELECYPRDYQLESHEAKMEFWLPIQ 293


>UniRef50_A5FHW5 Transcription activator, effector binding n=2 Tax=Flavobacteriaceae
           RepID=A5FHW5_FLAJ1
          Length = 160

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 12/163 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVD------SKNIVPKEWVAVYYD 53
           M   I+   ++ + G H+   + +    + +   M            N+   E   + + 
Sbjct: 1   MEARIETLSEKKLIGKHIEMSFIENKTFELWSSFMPSRKNIKNTIDDNLYSLEVYTLDHF 60

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
           + +  P++  +    V V    T+PEN   +    +  G YAV V      +  K ++  
Sbjct: 61  D-NFDPSKTFQKWAAVEVQNLDTIPEN---LETLIVPDGLYAVFVHYGPASEAHKTYHPI 116

Query: 114 FNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQPK 155
           F   L +S Y +  +P F V       +D   + E+++ ++ +
Sbjct: 117 FTEWLPNSKYTVDNRPHFAVMDHKYKKDDPDSEEEIWIPIKNR 159


>UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium
           RepID=C0CY04_9CLOT
          Length = 295

 Score =  103 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 10/158 (6%)

Query: 2   NYEIKQE-EKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59
           + EI Q  E+  +AG   +    Q  + + ++Q + +      + +   ++         
Sbjct: 140 SPEILQMTEEIKIAGLRDITSISQNRIPQLWDQFLRFHGDLYELTETAYSICETRQTAYA 199

Query: 60  AE---KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            +            VP +  LPE    +  T +  G+YAV   R   +   + +   + +
Sbjct: 200 EDGDVTFSVMVGSPVPDFSNLPET---LAQTTLRPGKYAVFTHRGSLEKLLQTYQYIYGT 256

Query: 117 LLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAV 152
            L  S   +  +  FEVY       +D   ++++Y+ V
Sbjct: 257 WLPSSGQRLDDRDDFEVYERKVLAMQDPENEVKLYIPV 294


>UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SDP4_LEPBA
          Length = 289

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 10/156 (6%)

Query: 6   KQEEKRTVAGFHLVGPWE---QTVKKGFE--QLMMWVDSKNIVP--KEWVAVYYDNPDET 58
           K     ++     +G ++     +    E  QL       +++    +W+ +  D+PD T
Sbjct: 136 KTISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLLEFHHKWIGISQDDPDVT 195

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             + +R D   T+   F  P   +G     I GG Y         ++    +    N   
Sbjct: 196 CKDNIRFDLGFTISEKF--PSPPDGFGKQTIPGGNYLQIRYTGDYENLPMIYDWILNQYC 253

Query: 119 QDSAYEMLPKPCFEVYLNNGAEDGYW-DIEMYVAVQ 153
             S  ++   P +E YLN           ++Y+ ++
Sbjct: 254 IVSKLKLKNNPPWECYLNPFEPIPDKRITDIYIPLE 289


>UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19 Tax=Listeria
           RepID=B8DCJ4_LISMH
          Length = 159

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 23/168 (13%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-----QTVKKGFEQLMMWVDSKNI-------VPKEWV 48
           M  EI +    T  G       E     + + + +++     D++ I            +
Sbjct: 1   MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGIL 60

Query: 49  AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107
            V   N      +K+     +            E +    I   ++A+  +     +   
Sbjct: 61  GVCQMNG-----DKMDYYIAIESELT-----PPEDMEKLTIPASKWAIFKSVGPLPNAIQ 110

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
           K W   +    Q S Y     P  EVY         +  E+++ V  K
Sbjct: 111 KVWEYIYGEWFQTSNYTHGNAPELEVYTEGDTTAADYYSEVWIPVVEK 158


>UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium
           RepID=A7GBT6_CLOBL
          Length = 289

 Score =  103 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTV-KKGFEQLMMWVDS--KNIVPKEWVAVYYDN-PDE 57
              IK   +  V G       +  +    +               P ++  +  ++ P  
Sbjct: 133 QPVIKVIPEVKVIGIKGKTSLKNNLLPDLWSAFNKNSSKIVNKAEPLKYYGICENDRPTN 192

Query: 58  TPAEKLRCD--TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
              E +       + V  +  +PE   G++   I  G+Y V   +       + +   + 
Sbjct: 193 QFGENVAYSEIVGIEVTSFDYIPE---GMVAKVIPQGKYVVFTHKGSIHKLQETYEYIWG 249

Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
           + +  S  E+  +  FE+Y     GA +   +I++Y+ ++
Sbjct: 250 TWIPFSKVELDMRDDFELYDEGFKGANNHLSEIDIYIPIK 289


>UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=Bacteria
           RepID=A9KRP2_CLOPH
          Length = 292

 Score =  103 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 27/170 (15%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT---VKKGFE---------QLMMWVDSKNIVPKEWV 48
           MNY+I Q     V G        +    V + +E         + +  +   +  P  ++
Sbjct: 128 MNYQIVQFPAFKVVGITNRINTSEAFKIVPQIWENAWKDGTMNRFIELLKKTDYRPAGFL 187

Query: 49  AVYYDNPDETPAEKLRCDTVVTVPGYFTLPE-----NSEGVILTEITGGQYAVAVARVV- 102
            +  D       E    D ++ +  +  +PE       +G+         + V  A    
Sbjct: 188 GICADGKWGNSEE---MDYILAITNHVDVPECNYVSPPDGMKEFCYPASTWVVFDADGEL 244

Query: 103 GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
                K   QF++  L +S YE+   P  E Y+ N  +      E+++ +
Sbjct: 245 PSAVQKIHKQFYSEWLPNSGYELADLPVIESYMQNNHQ------EVWIGI 288


>UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales
           RepID=B8FSY0_DESHD
          Length = 291

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 13/162 (8%)

Query: 2   NYEIKQEEKRTVAGFH-LVGPWEQTVKKGFEQLMMWVDS--KNIVPKEWVAVY---YDNP 55
           + +I +  +  VAG        +  +++ +++           I       +     +N 
Sbjct: 133 HPKIVELPEIKVAGLRGETTLRDNRLRELWDRANSLYIQIPNRIPNGRAFGICEACAENT 192

Query: 56  DETPAEKLRCD--TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
             T  + +       + V  +  L E     +   I GG+YAV   R       + +   
Sbjct: 193 LYTMNDDILFTEVAGIEVSSFAGLTEP---FVQKIIPGGRYAVFTHRGTLGMLPQTFDYI 249

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
           + +    +  EM  +  FE+Y     G +    ++++Y+ ++
Sbjct: 250 WGTWFLTTKEEMDWREDFELYDERFLGYDHPDSEVDLYIPIR 291


>UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium
           ALC-1 RepID=A8UMK3_9FLAO
          Length = 159

 Score =  102 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 1   MNYEIKQEEKRTVAGFH---LVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAV--YYDN 54
           MN ++ Q  ++ + G       G +   +   +++ M      KN V  E++A+  Y D 
Sbjct: 4   MNPKVIQISEKNLIGMKSTMHHGQFSN-IVTLWKRFMPNRRIIKNAVNNEFIALQEYIDF 62

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
            +            + V     +    +G+    I  G YAV + + +     K + +  
Sbjct: 63  NNF--EAAFDIWACIEVTNLDDIT---DGMETFTIPEGAYAVFLQKGMDAS--KTYQKIM 115

Query: 115 NSLLQDSAYEMLPKPCF----EVYLNNGAEDGYWDIEMYVAVQPKHH 157
              L  S Y +  +P F    E Y N   +      + YV V+ KH 
Sbjct: 116 TEWLPTSGYIIDDRPHFQVMGEKYKNGSPDSEE---DFYVPVR-KHQ 158


>UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 Tax=Clostridium difficile
           QCD-32g58 RepID=UPI00006DCB74
          Length = 167

 Score =  101 bits (251), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 11/160 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQL--MMWVDSKNIVPKEWVAVYY---DNP 55
              IK+ EK  V G       E   +   +E+   +  +    +  K    +     +  
Sbjct: 11  KPVIKEIEKIKVIGIKDKVILENNSLPDLWEKFRKVHHIVPNTLPSKRVFGICEAISEIH 70

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
             + + +      + V  Y  +P +    +   I  G+YA+       D+  K +   + 
Sbjct: 71  LVSESMEFNEIIGLEVNSYDVIPNS---FVSKTIKEGKYAIFTHTGSLDNLDKTYEYIWG 127

Query: 116 SLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
           +    S  E+  +  FEVY     G  +    I++Y+ ++
Sbjct: 128 TWFLSSKEELDIRDDFEVYDERFLGPSNVNSQIDIYIPIK 167


>UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax=Geobacter sp.
           FRC-32 RepID=B9M8P4_GEOSF
          Length = 221

 Score =  101 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVDS-KNIVPKEWVAV--YYDNPD 56
           M   I+  E + + G H           + + + M      K+    +++++  Y +   
Sbjct: 66  MEPRIEILEPKKLIGIHKKMSLSNNKTAELWREFMPRRMEVKDRSTTDYISMQKYDNCWT 125

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
            +P         V V     +P +   +    + GG+YAV          A  +      
Sbjct: 126 FSPDAVFEKWATVEVSSLEEIPTS---METYLLQGGKYAVFTHHGPASAAAGTFQYILGE 182

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAV 152
            L  S+Y +  +  FEV        D     E++V +
Sbjct: 183 WLPKSSYNLDDREHFEVLPEGYNPIDPEAKEEIWVPI 219


>UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134
           RepID=A1ZPC8_9SPHI
          Length = 159

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDS-KNIVPKEWVAVYYDNP----- 55
             I +  +  + G H          +  ++Q M         V + + ++    P     
Sbjct: 4   PSITEIPECKLIGMHTDLSLIDNKTQSLWQQFMPRRQEVHQRVGQSFYSMQVYAPGFSMQ 63

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
           + TP         V V  +  +P+   G+    +  G+YAV + +     F   +   F 
Sbjct: 64  NFTPHTVFTKWAAVEVSSFENVPK---GMHAFTLPSGKYAVFIHKGPASAFKPTFDYIFG 120

Query: 116 SLLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAV 152
             L  SAY +  +P FE+        D   + E+++ +
Sbjct: 121 EWLPKSAYTLDQRPHFELLPEGYVPTDPNAEEEVWIPI 158


>UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes
           RepID=C1FU00_CLOBJ
          Length = 290

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 22/168 (13%)

Query: 1   MNYEIKQEEKRTVAGFHL-----VGPWEQTVKKGFEQ------LMMWVDSKNIVPKEWVA 49
           MNY I++++   + G        +    +TV K +        +       + +P   + 
Sbjct: 134 MNYRIEKKDSFRIVGISEPLETEMEKNFETVPKMWGTAAMNGTIPRLAAMMDGIPMGLLG 193

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKP 109
           V          +  R    V             G+    +    +A+   +       + 
Sbjct: 194 VS----SCNNLDNWRYYIAVASSQPIE-----NGLEEYIVPSSLWAIFSGKGTAKSMQEL 244

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157
             +     L  S YE    P  EVYL    ED  +  E+++ V  K +
Sbjct: 245 EKRIITEWLPTSGYEYGNAPDIEVYLKADPEDTEY--EVWIPVLKKEN 290


>UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium
           beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8
          Length = 290

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVK-KGFEQLMMWVDSKNI--VPKEWVAVYYDNPD- 56
           +  EI   + + V GF      E+    + +E+L   ++ +    +     ++Y  +   
Sbjct: 131 LQPEIVTFQPKCVVGFRYYMSIEKNNSIEMWEKLNAQLEKQKYISMNNNRYSIYETSGTC 190

Query: 57  ----ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
                    +      +       +PE   G+ L EI+GG+YA  V +    +    ++ 
Sbjct: 191 LQNTFNKNSETTLFIGIETSDDNNIPE---GMELKEISGGKYAKFVHKGTVKNLISTYHY 247

Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
            +     +S++++  +   E Y     GAED    IE+Y  +Q
Sbjct: 248 IWGVWFPNSSFQLDDRDDLECYTEKFLGAEDEESQIEIYFPIQ 290


>UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio
           RepID=B5EUU0_VIBFM
          Length = 299

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 13/161 (8%)

Query: 3   YEIKQEEKRTVAGF--HLVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDN 54
             ++ +    V G    L G       + + V   +  L   +     +P++  AV   +
Sbjct: 140 VRLEYKPSFKVLGLSTRLQGILSDTPDFNEKVPSVWNALDTSIVYLPSIPEQKYAVI--D 197

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENS--EGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
             E  A+ L     +      T   N     + +  I   +YAV   +    DF+K    
Sbjct: 198 TREENADSLLYWAGINCEALSTDELNQHKADLQIITIPEQEYAVLPFKGAAQDFSKSVEW 257

Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
             +  L  S ++ +     E+Y ++  + G  D+E ++ ++
Sbjct: 258 LISEWLPTSGHQGIEGFDLEIYQSSTTQ-GVIDVEYWLPIR 297


>UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas
           campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5
          Length = 307

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           +  ++   +RTV    +  P+E+  V+    +L+ W     +   +W+   +D P    A
Sbjct: 147 SVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAGVEHHQWLGYLWDQPRLASA 206

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
              R D  V V            + +      + A  V R       + +    ++ L  
Sbjct: 207 ADCRYDVAVEVTHGRH----CGEIGVFRFPPMKVAEVVIRGGLALEMRAFGWVRDTWLPA 262

Query: 121 SAYEMLPKPCFEVYLNNGAEDGYWDIEM--YVAVQ 153
           S Y     P FE +L      G    E+   + ++
Sbjct: 263 SGYLPTDLPAFEAWLGLPYAHGAEHFELACQIPIR 297


>UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria
           RepID=A9CGS4_AGRT5
          Length = 274

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 13/154 (8%)

Query: 3   YEIKQEEKRTVAGFHLVGP--WEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETP 59
            E+++ +   V G           T+   +++  +     + +V      V         
Sbjct: 128 PEMRRADAFMVVGLSTPCSLENNSTIPALWQRFNLRESEVEEVVSGAAYGVC---SAADE 184

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A        V           + G+   E+    YAV        D  +  Y  +N  L 
Sbjct: 185 AGNCTYLAGV------KALTKTPGMDYIELPAQSYAVFTHNGHISDLPRTVYTIWNKALP 238

Query: 120 DSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAV 152
           ++  +    P FE Y      E G   +E+++ V
Sbjct: 239 EAGLKTADSPDFERYDQRFNPETGRGSVEIWIPV 272


>UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=O26725_METTH
          Length = 173

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59
           M    K  E   VA     G + + + +   ++  WV    + +       YY+ P+E  
Sbjct: 21  MEISEKMVEGIRVAYIECRGSY-ERIPEYISEVAGWVLKNGLQMTGRVYGTYYNTPEEVD 79

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+L  +  V++ G     E  E V +  +   +   A+      +     +        
Sbjct: 80  EEELLYEIGVSIAGEA---EADERVKIKNLPSHRVIAALHEGPYTEVGPVIHALI-EYAM 135

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
           ++ YE+   P  EVYLN+  E    ++  E+ + V+
Sbjct: 136 ENGYEIT-GPVTEVYLNSPLEVDESELLTEVQIPVK 170


>UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas
           RepID=B8L7S8_9GAMM
          Length = 285

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 16/159 (10%)

Query: 3   YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLM-MWVDSKNIVPKEWVAVYYDNPDETP 59
             +       VAG            +   + QL   W     I       V  ++     
Sbjct: 137 PRLLDTPAFQVAGIGMRHTRDSGGAIPGQWAQLNREWPAPAPIS----FGVCCNSD---D 189

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
                    +      T+P +        +   +Y VA            W+   +  L 
Sbjct: 190 EGGFDYIAALPASALSTVPAH---WQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYLP 246

Query: 120 DSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAV--QPK 155
            +   +   P  E Y     E  G   +E+++ V  +P+
Sbjct: 247 GTGLSLADAPDLERYDTRFDEHTGNGGVEIWLPVDQRPR 285


>UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokdonia donghaensis
           MED134 RepID=A2TVN7_9FLAO
          Length = 165

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 12/161 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSK-NIVPKEWVAV--YYDNPD- 56
           +  I ++ +  + G          T  + ++       +  N   +   +V  Y D+   
Sbjct: 8   SPVIVEQRELILVGLQATMSLAHNTTMQLWQAFGPLRRTILNKSNRGSYSVQCYADDFMT 67

Query: 57  --ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
              TP  K      V V     +P     + + +I  G++AV   +    DF       +
Sbjct: 68  TPFTPETKFVKWAAVAVTTENDIPNQ---LEVLKIPKGKWAVFPYKGTTRDFGVFAQYIY 124

Query: 115 NSLLQDSAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
           +  L +S Y++  +P +E    +  G  +   + E+++ ++
Sbjct: 125 SQWLPNSGYQLDDRPHYEFMPEDYLGPNNPQSEEEVWIPIK 165


>UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseudomonas fluorescens
           RepID=Q4K7X3_PSEF5
          Length = 162

 Score = 99.6 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 14  AGFHLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVP 72
            G        Q +   +++ +  +      V ++   +   NPD            V + 
Sbjct: 25  LGERFTPATRQDIGLLWQRFVPHIGKVPGQVDRKTYGICC-NPDG--QGGFEYIAGVEIS 81

Query: 73  GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFE 132
               LPE    + +       YAV        D  + +   +N+ L  S  E    P FE
Sbjct: 82  KLDDLPERYRWIEVQ---PQHYAVFEHGGALQDLPRTFDYIWNTWLPQSGREAADAPEFE 138

Query: 133 VYLNN-GAEDGYWDIEMYVAVQ 153
            Y  +   + G   +E+++ ++
Sbjct: 139 RYSADFNPQAGTGVLEIWLPLK 160


>UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus
           ATCC BAA-450 RepID=C9NSU9_9VIBR
          Length = 310

 Score = 99.6 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 13/165 (7%)

Query: 2   NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
              ++ + +  + G H  + G       ++Q V   + +L   +  +   P     V   
Sbjct: 142 EVRVESKNEFFLKGLHGEINGLFALNPDFQQKVPALWHRLEQTLPDEPERPVALTGVIDI 201

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSE----GVILTEITGGQYAVAVARVVGDDFAKP 109
                    +     V +     LP+        +    +    YAV           K 
Sbjct: 202 TQSHFDGSNMEYWAGVELTDDLLLPQLPSAISSELSTLVVPAQTYAVVKHCGPVVHLPKT 261

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAE-DGYWDIEMYVAVQ 153
              F  + L +S Y  +     E Y  N  + D    +E ++ V+
Sbjct: 262 LEWFLLNWLPNSGYRGIDGYELECYPANYNQHDTDAVMEYWIPVE 306


>UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RP62_CLOCL
          Length = 292

 Score = 99.2 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 16/167 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMM------WVDSKNIVPKEWVA 49
           MNY+I ++E   + G         G     + + + + +        + +        + 
Sbjct: 128 MNYKIIEKEPFKIFGKDFKTNIIGGRCFSEIPEFYAKCISDGTSAKIIRNAGKPENGILD 187

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV-VGDDFAK 108
           V            +R      V    T         + EI    +A+        +D  +
Sbjct: 188 VGVLFNHNPQDGSMRYMIGCDVTD--TNTNILTEFRILEIPSLTWAIFEVENNSDEDIHE 245

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
            W +  +     S+YE    P  E Y   G  D     E+++ V  K
Sbjct: 246 MWRRIGSEWFPASSYEHADAPEMERYY--GNNDTGCRCEIWIPVIKK 290


>UniRef50_C3JZ42 Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas
           fluorescens SBW25 RepID=C3JZ42_PSEFS
          Length = 170

 Score = 99.2 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT----VKKGFEQLMMWVDS-KNIVPKEWVAVYYDNP 55
           +   ++  +   +AG    G + +     + K +E     +   K  V      V + NP
Sbjct: 19  LEPRMEAGKALVIAGV--QGRYSKATVGDIPKLWELFDTCIKDIKKRVGGVTYGVCH-NP 75

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                 +      V VP    +P N E +   EI    YAV           + + +   
Sbjct: 76  K---HGEFDYMAGVEVPTKGDVPSNFESI---EIPPLNYAVFPHYGPVQALEQTYERIMF 129

Query: 116 SLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAV 152
             L  S Y+++    FE Y  +     G   +E+++ V
Sbjct: 130 EWLPHSGYKVMGA-DFERYSADFDGRKGTGTVEIWLPV 166


>UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Magnetospirillum
           magnetotacticum MS-1 RepID=UPI0000383DF5
          Length = 139

 Score = 99.2 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 10/145 (6%)

Query: 13  VAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETPAEKLRCDTVVT 70
           +A     G     + +   + + W  + ++ P +     + Y  PD+ P  + R D  V 
Sbjct: 1   MAVMTHRGDPA-LIAETVGRFIAWRKANHLPPSQHATFNILYGGPDQVPPAEFRQDLCVA 59

Query: 71  VPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPC 130
             G         GV    I GG+ AV       D         +   L  S  E+     
Sbjct: 60  TGGKAV--AFGSGVAAGIIAGGRCAVLRHVGPDDGLEAALTYLYGDWLSQSGEELRDSLP 117

Query: 131 FEVYLNNGAEDGYWD--IEMYVAVQ 153
           F   L    E    D  +++++ ++
Sbjct: 118 F---LQRFPELAGHDSPVDIFLPLR 139


>UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio RepID=A7JZZ4_VIBSE
          Length = 310

 Score = 98.8 bits (245), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 13/165 (7%)

Query: 2   NYEIKQEEKRTVAGFH--------LVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
              I+ +    +AG+H            ++  V   + QL    ++   + + ++ V   
Sbjct: 140 EVRIETKPAFVLAGYHEPIYGLFSATPNFQSKVPSLWSQLYS-SENHTHLERNYLGVIDV 198

Query: 54  NPDETPAEKLRCDTVVTVPGYFTL---PENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110
               +  ++L                   +++   L  +    YAV        + A   
Sbjct: 199 TKAYSSNQQLEYWAGYEYNSASRTSIYKGSTQEPDLLVVPEQTYAVITHIGKASNLAATL 258

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQP 154
             F    L  S Y  +     EVY  +   E     +  ++ V+P
Sbjct: 259 EWFILHWLPYSNYHGIDGYELEVYPEDYDVESENAQMHYWIPVKP 303


>UniRef50_D2R723 Transcription activator effector binding protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R723_9PLAN
          Length = 155

 Score = 98.8 bits (245), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 9/156 (5%)

Query: 1   MNYEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYDNPDE 57
           +    +       AG            + + + Q    +      V +    +       
Sbjct: 3   LTPVFRDVPAMRWAGIMRRYSMESRCEIPQLWGQFAPHIGQIPGQVGRRSYGISV----L 58

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
                   D +  V  + +     +G+    I   ++AV +      +        +   
Sbjct: 59  VSGTDCDFDYMAAVEVHSSAEIP-DGMAEFAIPPQKFAVLLHTGHVSELPGFIDAIYRQW 117

Query: 118 LQDSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAV 152
           L  S     P PC E Y      E     +E++V +
Sbjct: 118 LPTSGLRTAPGPCIECYTEEFCGEKMIGGMEIWVPI 153


>UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium
           gleum ATCC 35910 RepID=C0YJ67_9FLAO
          Length = 274

 Score = 98.8 bits (245), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 14/158 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58
           +  EI   +   V  +     +   + ++  +E+ M   +  +    E+  V  D P   
Sbjct: 126 LEPEIVYLKPMQV-YYQSTNTYYNNEEIEVLWEKFME--NKFHDSGTEYFGVIADEPLIK 182

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
                R D   ++            +    I GG+YA  +     +   + + + ++  +
Sbjct: 183 TEISCRYDACSSMQSENKK------LPSKIIFGGKYARFIHPGSYETIDETYTKIYSRWI 236

Query: 119 QDSAYEMLPKPC---FEVYLNNGAEDGYWDIEMYVAVQ 153
             S  E    P    +E Y  +   +      + + ++
Sbjct: 237 FHSELEFSHTPIIEKYERYSEHAENEEEQLTYILLPLK 274


>UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11SS0_CYTH3
          Length = 163

 Score = 98.8 bits (245), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 18/168 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDS------KNIVPKEWVAVYYD 53
           M   I+    + + G  +   +        ++  M            ++   ++ A  + 
Sbjct: 1   MESRIEILSPKKLIGMRMSMSFADNKTGILWKNFMSRKHEVTHTAGTDLYSIQFYAAGF- 59

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
                P         + V     +PE   G+   E+  G Y V + +    + A  +   
Sbjct: 60  FSAFNPRAHFDKCASIEVTSMEAIPE---GMEYIELPAGLYVVFLYKGDARNAAAVFQYI 116

Query: 114 FNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPKHH 157
             + L  S YE+  +P FEV    Y  +  +      E+++ V+ K+ 
Sbjct: 117 LGTWLPASPYELDIRPHFEVLGETYKKDDPDSEE---EIWIPVRDKNK 161


>UniRef50_A3XLX8 Probable transcription regulator, MerR family protein n=1
           Tax=Leeuwenhoekiella blandensis MED217
           RepID=A3XLX8_9FLAO
          Length = 161

 Score = 98.4 bits (244), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDS-KNIVPKEWVA--VY---YD 53
           M  EI + E R + G  +            ++  M      KN V   + +  VY   + 
Sbjct: 1   MKPEILEIEPRKIIGKCVTTTLSFDDTAALWQDFMSRHKEIKNCVDSGFYSMQVYPSGFK 60

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
             + T   +      V V  + T+PE   G+    I GG YAV        +F +     
Sbjct: 61  VEEFTRETEFERWAAVEVTDFDTVPE---GMQTKTIAGGLYAVFTHVGPVKEFVETSNYI 117

Query: 114 FNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155
           + + L  S Y++  +  FE     Y   G E    + E+++ +Q K
Sbjct: 118 YGTWLPQSGYKLDKRAHFERLGEKYY--GPEHPESEEEIWLPIQLK 161


>UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=Methanomicrobia
           RepID=A3CSG8_METMJ
          Length = 286

 Score = 98.4 bits (244), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 14/160 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN------IVPKEWVAVYYDNP 55
              IK             G +++T+ +   +L  +V  ++       +    + + +D  
Sbjct: 127 EPVIKDIPTVRALSLRERGIYQETIPRMIRELFTYVCPEDGRQPAARIAGPIMFICHDE- 185

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                 +   D  V VP   ++  +   V +  + GG++   +         K + + F+
Sbjct: 186 ---EYRETDADIEVAVPITGSVSLDGTAVEVVNLPGGRFLSVLHTGPYPGVGKAYERLFS 242

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             + +        P  E+YLN+ AE    ++  E+   V+
Sbjct: 243 -YMNEHRLVPS-GPSRELYLNDPAEVPEEELLTEVQSPVK 280



 Score = 50.7 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPAE 61
            E+              GP+   V K +E+L  +++   +VP      +Y ++P E P E
Sbjct: 211 VEVVNLPGGRFLSVLHTGPYP-GVGKAYERLFSYMNEHRLVPSGPSRELYLNDPAEVPEE 269

Query: 62  KLRCDTVVTVPGYFTLP 78
           +L  +    V      P
Sbjct: 270 ELLTEVQSPVKDLPPSP 286


>UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croceibacter atlanticus
           HTCC2559 RepID=A3U5E2_9FLAO
          Length = 165

 Score = 97.7 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMW---VDSKN---IVPKEWVAVYYD 53
           M   I+  +   + G H        T ++ +++ M     + ++    +   E       
Sbjct: 6   MTPRIETLKPTVLVGMHNTMSIAANTTQQLWQRFMPKHKSILNRGDAILYSAEVYPSVDY 65

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
                P  + +    V V    ++PE  + +++     G YAV     +  D  K +   
Sbjct: 66  FKSYNPEAEFQKWAAVAVHSSQSIPETMDMLMVQ----GDYAVFTYTGLASDVYKAYQFI 121

Query: 114 FNSLLQDSAYEMLPKPCFEVYLN-NGAEDGYWDIEMYVAVQPKH 156
           ++  L  S Y++  +P F    +     D     E+++ +Q K 
Sbjct: 122 YSKWLPASKYKLSNRPHFAKMDSTYNPNDPSSQEELWIPIQLKE 165


>UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001B9EE80
          Length = 285

 Score = 97.3 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKG------------FEQLMMWVDSKNIVPKEWV 48
           MNY I++ +  +V GF      ++  ++             F++L  +  +     +  +
Sbjct: 128 MNYRIEEMKAFSVVGFKKQVSTQRAYEEVPFLWKDAHAEGIFDKLWNY-RAHEHPIRGIL 186

Query: 49  AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAK 108
            V  D  D    E         +    +     E ++L       +AV          A+
Sbjct: 187 GVCAD-GDYGKNEYFDY-----IMSVVSTHNPPEPMVLRHFPAAAWAVFELEGDPKGIAE 240

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157
            W + +   +   AY++ P P  E YL        +  E+++ V  K  
Sbjct: 241 MWKRLYTEWIPSHAYDLAPLPAIECYL----PPDEYKNELWIPVIRKTQ 285


>UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium
           spiritivorum RepID=C2G4Y4_9SPHI
          Length = 278

 Score = 97.3 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 12/156 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP 59
           +  +I      TV        +  T ++  ++  +     +     ++  +  D P    
Sbjct: 130 LQPQIIYVRPTTVYYRSSFINYIDTEIESQWDTFLQNEFPEQ--GNDFYGIVADEPLIRE 187

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
               R DT  ++    +       +    I GG+YA        +     + Q ++  + 
Sbjct: 188 NLNCRYDTCSSLQSLTS------RLPSKTIGGGKYAQFTHYGRYETIEDTYSQIYSGWIL 241

Query: 120 DSAYEMLPKPCFEVYLNNGAED---GYWDIEMYVAV 152
            +       P  E Y  +             +++ +
Sbjct: 242 TAGLRFSHTPVIEKYTRHPDNTDSVEEQITYIWLPL 277


>UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methanosarcina barkeri
           str. Fusaro RepID=Q46A44_METBF
          Length = 321

 Score = 97.3 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 9/155 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59
           M  ++K  E+  VA     G   + +++   +L  W+  K + + +   AVYY +P E P
Sbjct: 1   MEIKLKIVEEHQVASISHEG-LVEEMEEIIGELAGWIKQKRLKITQPPFAVYYTSPTEVP 59

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            EK++ +  +   G        E V +  +   +   A+ +    +    + +     + 
Sbjct: 60  PEKMQYEIGIPFQGD---TNGDERVKIKIMPKHKILSAIHKGPYAEIGSLYAEMM-QHII 115

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +S YEM+  P  E Y+N   E    ++  E+   V
Sbjct: 116 ESGYEMIGAP-REAYINTPREVPDNELLTEVVFPV 149


>UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI n=2
           Tax=Lactobacillus rhamnosus GG RepID=C7TEN0_LACRG
          Length = 151

 Score = 96.9 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 10/157 (6%)

Query: 1   MNYE---IKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV-AVYYDNPD 56
           M Y    I+  ++  VA F  +GP+     K       WV ++ +     +  +  DNP 
Sbjct: 1   MEYRKVHIEYMKETNVAYFRRMGPYGSENGKLMHSFKQWVKAEGLFEGSTILGIALDNPQ 60

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
             P    R D  + +         +  +    +   +YA+           + + +  N 
Sbjct: 61  NVPDANCRYDVCLIINKE---HLKNNRIKQRPLPSIKYAIFKIPHTEIAINEFYKKL-NQ 116

Query: 117 LLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           ++ +   ++L KP  E Y       G+   E+ + ++
Sbjct: 117 IICEKQLKVLNKPIIERYKQKLVSLGF--CEILIPIE 151


>UniRef50_A0KIR8 Transcriptional regulatory protein n=2 Tax=Aeromonas
           RepID=A0KIR8_AERHH
          Length = 155

 Score = 96.9 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 10/156 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
             I+      + G      +        +            + +    V         A 
Sbjct: 5   IRIETGLPMLLGGLRRHHAFAHADFGGQWRDFCALGPLPGQLGEHAYGVI----CGVTAT 60

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           +      V V     LP+    +    I    YAV + +         W Q     L  S
Sbjct: 61  ECEYLCAVEVAALEVLPKTLGRM---RIEPQTYAVFLHQGHVSAMPHTWQQAL-DWLAQS 116

Query: 122 AYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQPKH 156
           AY+   KP FE Y      E G  ++E+++AV P+ 
Sbjct: 117 AYQSAHKPDFERYGAAFDPETGSGEVELWLAVLPRQ 152


>UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bacteria
           RepID=B0S9N2_LEPBA
          Length = 158

 Score = 96.5 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 17/165 (10%)

Query: 1   MNYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVD-SKNIVPKEWVA--VY-YDNP 55
           M + I   EK+ + G  +            ++  +  +   +N   +E+++  VY  D  
Sbjct: 1   MEFNIITLEKKWIIGKSVEMSLVANQTPDLWKSFLPNIQVIQNRTSQEFISASVYPLDYF 60

Query: 56  DETPAE-KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFF 114
            +   + K +    V V     +    +G    EI  G Y+V + + +  +    +   F
Sbjct: 61  QQFDPKCKFQKWAGVEVSAVTNV----DGFNQLEIPSGLYSVFLYKGLPSEAGAFYQNLF 116

Query: 115 NSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155
            + L +S Y++  +P FEV    Y N+          +Y+ ++P+
Sbjct: 117 MNWLPNSGYQLDNRPHFEVMGERYRNDDPSSEEL---VYIPIKPR 158


>UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RJ15_CLOCL
          Length = 290

 Score = 96.1 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 22/164 (13%)

Query: 1   MNYEIKQEEKRTVAGFH---LVGPWEQTVKKGF-----EQLMMWVDSKNIVPKEWV--AV 50
           MNY I +E+  T+ G           +T+   +     E++   +       +  +  +V
Sbjct: 134 MNYRIVEEDALTLFGISLTTRREESFETIPDFWNKCEEERITYKIVEAGHGNERTLLKSV 193

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVA--VARVVGDDFAK 108
            YD       E ++    + +P        S+   +  I    +AV   V     D    
Sbjct: 194 LYD----MDNEMMKYMIGLDMPE----EGVSDEFEVVTIPAKTWAVFPLVLEKPEDSITS 245

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            W + F     +S YE+      E       +DG   +E +V V
Sbjct: 246 IWKRIFTEWFPNSGYELDEGSWQERCH--WRDDGKMIVEAWVPV 287


>UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria
           RepID=A0KJN2_AERHH
          Length = 325

 Score = 96.1 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 46/163 (28%), Gaps = 19/163 (11%)

Query: 2   NYEIKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPK-EWVAVYY 52
              I+      + G    + G       ++QTV   +  L     +  + P  E V V  
Sbjct: 171 QVRIESPPGFILQGVKGQIRGLFAAAPDFQQTVPAIWRALRT---AGGLPPGQERVGVV- 226

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
                   E L       +    +LP    G+    +    YAV           +    
Sbjct: 227 --DVSGAGESLPYWAGSVMEEGASLPA---GLARLPVPAQTYAVLSHVGPVSQLGQTLNW 281

Query: 113 FFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQP 154
           F    L  S Y  L     E Y  +         +E ++ V P
Sbjct: 282 FIQHWLPSSGYRGLDGFELERYAPDFDGNQPDARMEYWLPVAP 324


>UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=1 Tax=Moritella sp.
           PE36 RepID=A6FJ46_9GAMM
          Length = 312

 Score = 95.7 bits (237), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 24/175 (13%)

Query: 1   MNYEIKQEEKRT------VAG--FHLVGPWEQTVKKGFEQLMMWVDS-----------KN 41
           +   I+   + T      V    F L   ++Q V K + + +  +               
Sbjct: 141 LQIRIETRPEFTLHCTSGVISGLFSLEPNYQQQVPKIWSEFIYNLPEVEKTSVLSEVSSK 200

Query: 42  IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV 101
            +  E + V            +      T             +   ++   +YAV     
Sbjct: 201 HMDIELIGVVGVIDANDDMNAIPYWAGSTAGALLGTTS----LDTIDVPAQEYAVIPFTG 256

Query: 102 VGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYL-NNGAEDGYWDIEMYVAVQPK 155
                 +     F+  + DS Y+ +     E+Y  N   ED    +E ++ ++P+
Sbjct: 257 PIKQLEQVLAWLFSHWIPDSNYDSVDGYELEIYPVNYDPEDSSSYMEYWLPIEPR 311


>UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=Q24TQ4_DESHY
          Length = 305

 Score = 95.7 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 19/169 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLVGP------WEQTVKKGFEQL-----MMWVDSKNIVPK--EW 47
           M+Y I++++   +                + +   + Q      M  +            
Sbjct: 141 MDYRIEKKDAFKIICKKKQVNKPQGDSATEEISAFWNQCTKDGTMEDICKYGRFDGLGGV 200

Query: 48  VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFA 107
           + + +    +               G   +P + EG+ + EI    +AV   +    +  
Sbjct: 201 LGICFS--GDMADAAFPYGIGAEYNG---VPLHGEGLEILEIPPYTFAVFQCKGPMPEVF 255

Query: 108 KP-WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
           K  + +        S Y+       EVY +    +  +  E+++AV  K
Sbjct: 256 KTTYQRIVTEFFPQSNYQYGNGVELEVYPSADVSNPEYTCEIWIAVNEK 304


>UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staphylococcus
           RepID=B9CPS5_STACP
          Length = 165

 Score = 95.3 bits (236), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 1   MNYEIKQEEKRTVAG-FHLV---GPWEQTVKKGFEQLMMWVDSKNIVPK------EWVAV 50
           M+Y I+  E   V G +      G  +  +   +E +      + ++ K        + V
Sbjct: 11  MDYRIENIESTKVIGAYRHYKSGGHAQSNIPDFWEDVHTMKLDERLLQKSDNQLNGLLGV 70

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
                   P E    D  + V    +  +  +G+    + GG+Y V  A+        + 
Sbjct: 71  CL------PKEDRTMDYAIGV---TSTEDPHDGLETFNLEGGKYLVVEAKGPVPKSVQQT 121

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
                + L+     E+   P FE+Y     +   +  E+++ +Q
Sbjct: 122 MNDIHHELIPRENIEIKQAPFFELYGPGDTQSESYVTEIWMPIQ 165


>UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria
           RepID=Q15WE0_PSEA6
          Length = 350

 Score = 95.0 bits (235), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
             ++    +  +A     G   + V K   Q + W       P   +   + Y++P + P
Sbjct: 198 QIQVIDFPRTAIAFLTHEGD-PEGVMKTVAQFIQWRKQYGPSPRTSKTYNILYNDPRDVP 256

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E+ R D   ++     +  N   V    I  G+ A           ++   + + ++  
Sbjct: 257 KEEYRFDVAASIRK--VVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISL 314

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +  YE+   P F   +    +    +   ++Y+ +
Sbjct: 315 NEDYEIRNAPLFVERVQGFPDVPENETIIDIYLPI 349


>UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Tax=Chlorobium
           ferrooxidans DSM 13031 RepID=Q0YQP0_9CHLB
          Length = 161

 Score = 95.0 bits (235), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 11/147 (7%)

Query: 10  KRTVAGFHLVGPWEQT---VKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCD 66
              + G      + ++   + + +E               +  V   +     A  +   
Sbjct: 14  PMLLGGLRCYHLYTESSRSIPEQWEAFRALGRIPGQTGSAFYGVMCGH----DAGGIEYL 69

Query: 67  TVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEML 126
             V V  +  LP     +    I   +YAV             W +  +    +  Y   
Sbjct: 70  CGVEVDSFAGLPS---ELGRMRILEEEYAVFGHSGQISTIRTTWERILHEWFPNGGYRSA 126

Query: 127 PKPCFEVYL-NNGAEDGYWDIEMYVAV 152
            KP FEVY        G  D+E+++A+
Sbjct: 127 NKPDFEVYDQRFDTRTGSGDVEIWIAI 153


>UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT
          Length = 290

 Score = 95.0 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 35/174 (20%)

Query: 1   MNYEIKQEEKRTVAGF-----HLVGPWEQTVKKGF---------EQLMMWV---DSKNIV 43
           MNY I+++E  +V G       + G   + + + +         E+++          ++
Sbjct: 128 MNYRIEEKESFSVFGIDTILSKVDGECYKRIPEFWLKSIEDGTVERILKAADDGKQNMML 187

Query: 44  PKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG 103
                   ++N                +P         EG +  +I    +A+       
Sbjct: 188 NAAMYG--HEN-----DGTYHYMLCHRIPQKGIP----EGFVQLDIPKLTWAIFPTEEHT 236

Query: 104 DD-----FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
           +D         W + +      S Y+    P FE+Y   G  D  + +E+++ V
Sbjct: 237 EDKTSEKVQAIWERIYPEWFPSSGYQHADAPEFEMYYKVG--DNKYIVEIWIPV 288


>UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-binding subunit n=13
           Tax=Bacilli RepID=C2HEQ6_ENTFC
          Length = 298

 Score = 95.0 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 14/166 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKN---------IVPKEWVAV 50
           M + I+++E+  V G     P + + V +  ++L+  +             + P + + V
Sbjct: 135 MEFRIEKKEQFYVVGVAKKVPVQFEGVNQEIQKLVQTITETQREEMHKLGDLYPHQVINV 194

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
            Y    +   EK     +  +    T       + +  I    +A+   +          
Sbjct: 195 SYGFDGDRLEEKG--SLMHMIGFATTKENPYADLEMLAIEEHTWAIFPNKGPFPQTLQDT 252

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
           W + +   L  S YE++  P    +   G +  +   E+++AV+ K
Sbjct: 253 WGKIYAEWLPSSDYELVEAPEI-SFTKWGEDFSHVYSEIWIAVKAK 297


>UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=Methanosarcina
           RepID=Q465L3_METBF
          Length = 287

 Score = 95.0 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 14/162 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDS------KNIVPKEWVAVYYDNP 55
              IK+  +  V      G +  T+ K   ++   V S      +  V    + + +D  
Sbjct: 132 EPVIKEIPEMRVISKREKGTFVATIGKLIGEICTSVGSPENQRNRVKVTGPVMFLCHDE- 190

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                +++  D  + +P    +      + +  +   +    V R         + Q F+
Sbjct: 191 ---EYKEIGADIEIALPVSGRISVEDPKMEVKTLPAIRAISVVYRGPYPGVEAGYNQIFS 247

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQPK 155
              +++   +   P  E+Y N+  E    ++  E+ V ++ K
Sbjct: 248 YARENNLETL--SPDRELYFNSPEEVPEEELMTEIQVPIREK 287


>UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhodobacterales
           bacterium HTCC2654 RepID=A3VB55_9RHOB
          Length = 157

 Score = 95.0 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 14/160 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWE----QTVKKGFEQLMMWV-DSKNIVPKEWVAVYYDNPD 56
           N  I +   + + G   VG +       + K +EQ        K+ V      +      
Sbjct: 6   NAAIVESRAKLIIGL--VGDYSLDTRGEIPKLYEQFFAIRDGIKHRVSDVLYGISM---G 60

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNS 116
             P    R    + V     LPE +  + L +   G+Y V   R    +    +   F  
Sbjct: 61  AKPDGSFRYGVGIEVEEAEDLPEGACEMHLVD---GEYVVFSQRTPIAELPARFDAVFAE 117

Query: 117 LLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAVQPK 155
            L  S +       FE Y ++   EDG    E++V V PK
Sbjct: 118 WLPQSDFVQREGAVFECYPDDDSPEDGKMLYEIWVPVAPK 157


>UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12LA7_SHEDO
          Length = 297

 Score = 94.6 bits (234), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 7/156 (4%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP--KEWVAVYYDNPDETP 59
              +       +A     GP         +  + W  + +  P       + Y +    P
Sbjct: 144 KVTLVDLASIELAVVEHSGPVSNLHGSL-QAFIGWRRAMHTPPLVSRSFNLVYHDVKHVP 202

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           A + R D    +     L     G++  ++  G+YA+           +     +   L 
Sbjct: 203 ASEYRLDIGAEIG--RPLTAQDVGMVSKQLPKGRYALLAHTGNEASLGEAINDLYGQWLV 260

Query: 120 DSAYEMLPKP-CFEVYLNNGA-EDGYWDIEMYVAVQ 153
           +S   +   P   E                +Y+ ++
Sbjct: 261 NSGEPLADFPLVLERVTQFPDVAQHKAVTHIYLGLK 296


>UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1ARB2_SEBTE
          Length = 285

 Score = 94.6 bits (234), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW----EQTVKKGFEQLM------MWVDSKNIVPKEWVAV 50
           M   I ++ K  V G            + + K + +              +   K ++ +
Sbjct: 128 MKNRIAEKGKLRVIGMKRTYKNVEEGMENIPKFWIEFNASKECTEMCSKMDGELKGFLGL 187

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
               P ET A        +      +  E    +   EI   ++ +  A+    +     
Sbjct: 188 CI--PHETGAG-YDYMICIN-----SSAEAGGELEEYEIPDAKWMIFEAKGKLPESVQSV 239

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             Q +  +L  S Y+   KP FE+YL+   E+  +  E+++ V
Sbjct: 240 TKQIYEEVLTGSEYKHDNKPDFELYLSGDIENEDYITEIWIPV 282


>UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein
           n=1 Tax=Verrucomicrobiae bacterium DG1235
           RepID=B5JGT3_9BACT
          Length = 318

 Score = 94.6 bits (234), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 19/165 (11%)

Query: 3   YEIKQEEKRTVAGFHLV--------GPWEQTVKKGFEQLMMWVDS-KNIVPKEWVAVYYD 53
            EI      T AG                  +   +          +N+    +  +  +
Sbjct: 156 PEIVSLPSTTFAGLQSRFLSATSDEANNMTVIPNLWNAFFERASELQNLTEGVYYGLS-E 214

Query: 54  NPDETP-----AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAK 108
           NP+         ++        V     +PE   G+      GG +A    +   D   +
Sbjct: 215 NPEAINLARQHPDEAIYLAAAQVDPDAPVPE---GMHSWNSVGGLFAKFEHQGPVDTLGE 271

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNG-AEDGYWDIEMYVAV 152
                +     +S Y+    P    +      +      E++V +
Sbjct: 272 TIAYIYGKWFPESEYKEREGPDINRFGPRFIPQSENSLFEIFVPI 316


>UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID=Q9K6U2_BACHD
          Length = 160

 Score = 94.6 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 16/161 (9%)

Query: 3   YEIKQEEKRTVAGFHLVGPW--EQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDET 58
           + I ++ +R + G  L GP+     +   +E     V   + + ++     +  D     
Sbjct: 9   FTIVEQNERKMIGLKLEGPYTRMNEIGMLWETFNQRVSEIDHLVQDDLSFGIVQD----- 63

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
                     V V  +  +PE   G+    +   +YAV   +   D F++       S L
Sbjct: 64  RERDFTYYAAVEVSSFTKVPE---GMATIILPACRYAVFTHKGPQDKFSETVVAALKS-L 119

Query: 119 QDSAYEML-PKPCFEVY--LNNGAEDGYWDIEMYVAVQPKH 156
           ++S YE        E Y       E    + ++Y  ++   
Sbjct: 120 KESGYEKDSDNYWLEGYDDHRFSPELDNSECDIYFPLKANQ 160


>UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus
           oremlandii OhILAs RepID=A8MJ72_ALKOO
          Length = 302

 Score = 94.6 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 49/173 (28%), Gaps = 24/173 (13%)

Query: 1   MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNIVPKEW------VA 49
           M  +I Q +   + G+            + +   ++Q  +      +   ++        
Sbjct: 129 MEPKIIQRDSFKIVGYEFKTTLRNNAHSRDIPAFWDQCNIEGKEAKLYETQFPPRHGEYG 188

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVA-----RVVGD 104
           +  +       ++      V V    +       +   ++    YAV            D
Sbjct: 189 ICVN--TNMETDEFSYILGVEV---LSFDHAMIDMYTLDVPAATYAVFTTPSVEDHDFVD 243

Query: 105 DFAKPWYQFFNSLLQDSAYEMLPKP-CFEVYLNN--GAEDGYWDIEMYVAVQP 154
                W         +S YE+      FE Y       E   + +E+YV +Q 
Sbjct: 244 SIQGTWNYILEEWFPNSGYEIDDTKLDFEFYDERCHPWEYSKFSMEIYVPIQK 296


>UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CKN8_9FIRM
          Length = 167

 Score = 94.2 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 4   EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWV--AVYYDNPDETPAE 61
           +I++ +  T+A     G +    K   E     +  +N++    +   +  DNP +T  +
Sbjct: 23  KIEEFKDVTIAYMRRTGDYGFKNKILMENFKEHLRKENLLNSNSIILGIALDNPADTDRD 82

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDS 121
           KLR D  + V G     E +  + + +I  G YAV        D A  W       L   
Sbjct: 83  KLRYDVGLIVSG-----EPNTALDIRKIPDGMYAVFELPHTEQDVAAFWSNI--EQLVG- 134

Query: 122 AYEML-PKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
              +   KP  E Y  +  +      E  + ++
Sbjct: 135 DLTVDKAKPMIERY--SADKVAKHLCEFCIPLK 165


>UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7ILS3_9CLOT
          Length = 280

 Score = 93.8 bits (232), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 15/161 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD---NPDE 57
           M+Y I +     V G     P+       +  +    D  N   KE    +YD       
Sbjct: 128 MDYTIIERTPFNVMGIRRTTPYG---GGTWAIVKS--DGSNEAIKETTGRFYDLGLCFSF 182

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFN 115
                      +         E  EG+ + +     +    A+           W +  N
Sbjct: 183 GEDGSNDYMCGIEWDK-----EPIEGLDIFKYPEATWLKFEAKGSISSQVLGSVWQRINN 237

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKH 156
             +  S Y+    P  E Y+         ++E+++ V PK+
Sbjct: 238 EFMPQSKYKKTGLPTIEKYVLWDDAADICNVEIWIPVAPKY 278


>UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis
           excentricus CB 48 RepID=C5SFE7_9CAUL
          Length = 291

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVY---YDNPDETP 59
            EI   +  T+      G + + +   +++L   V S+ +  +    +Y   +D+P  T 
Sbjct: 137 IEIVAADPLTLTALRNTGAYPE-LNAVYQRLFDLVFSQ-LSMEHLAGLYGYQHDDPRHTA 194

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E  R +  V V G   L E+   +    +  G YA        D         + + + 
Sbjct: 195 PEACRAEVAVDVGGKAELTEDLYHI---VVPSGLYARLRHLGDYDAIQPAMDTLYLA-VI 250

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           D+ Y +  +P    +L++  E    D+  ++++ +
Sbjct: 251 DAGYALADQPLHLHFLDDPEEVATADLRCDLFLPL 285


>UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus
           halodurans RepID=Q9K6U1_BACHD
          Length = 300

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 15/163 (9%)

Query: 5   IKQEEKRTVAGFHLVG-----------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
           I   +   V G  L G             +  +   + QL   +         +V+    
Sbjct: 134 IVTRQPLQVVGLQLEGLSLPGGSDREQTTQVAIPSLWHQLEARIHEIERRVDPFVSYGIS 193

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
           +P             V +          +G I  EI GG YA    +   +  +      
Sbjct: 194 SPS-RDGSHFTYMACVEIEAGDV--NIPQGFIQKEIKGGTYASFHYKGAANQLSALTNYI 250

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155
           + S L  S Y+       EVY      EDG   +E++  ++ +
Sbjct: 251 YGSWLPSSQYQSHFGVEIEVYDEREPKEDGEVAVEIWTPIKKR 293


>UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=Bacteria
           RepID=Q18AY3_CLOD6
          Length = 288

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 23/168 (13%)

Query: 1   MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNIV------PKEWVA 49
           M Y I +++   + G       +V    + V K + + +       +       P   + 
Sbjct: 128 MQYRIVEKKGFRIVGIKESMNMIVEECFEKVPKLWAKCIKNGTIDKLSELINNEPCGLLG 187

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD---F 106
           V       T ++ L             L +  E +    I  G +AV        +    
Sbjct: 188 VSV----CTNSKGLDYYIAAPTDKPV-LEDTHEYL----IPSGTWAVFECVSPMPNALAI 238

Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
            +   +     L  S Y     P  E+Y N       +  E+++ +Q 
Sbjct: 239 QELQKRIITEWLPSSGYVYANLPDIELYPNGDINAPDYTTEVWIPIQK 286


>UniRef50_A6LWV9 Transcription activator, effector binding n=1 Tax=Clostridium
           beijerinckii NCIMB 8052 RepID=A6LWV9_CLOB8
          Length = 272

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 11/156 (7%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETP 59
           +  E+K  +   V            +     ++   +   ++ P    + +Y+D  +   
Sbjct: 122 LKVELKDRKSLIVIS-RRTITSMSNISSVIGKVFEDIFKMDLKPSGPVMTIYHDKQEF-D 179

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            E   C+  V V       +N     + E+ GG  A            + + +     ++
Sbjct: 180 VENADCEVCVPVNSRVNAEKNEN---IKELAGGLVASTTFVGPYSRLGEAYAKV-VKWIE 235

Query: 120 DSAYEMLPKPCFEVYLNNGAED---GYWDIEMYVAV 152
           D+ YE    P F++YLN          +  E+   +
Sbjct: 236 DNGYEYAGAP-FDIYLNGPQSVKSPEEFVTEVCFPI 270


>UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WAV0_BACSK
          Length = 119

 Score = 93.0 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 30  FEQLMMWVDSKNIVPKEWV-AVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88
            E    W     +     +  +  DNP+ TP E+ R D  V +   F + + +    + E
Sbjct: 1   MENFKKWAKLNGVFNDSIILGIPRDNPEITPKEECRYDVCVVINKDFNVTKPA---HIGE 57

Query: 89  ITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEM 148
            +GG+YAV +     +  ++ W   F+  ++ +   +  +P  E Y +   ++     E+
Sbjct: 58  FSGGKYAVFLLDHTKEAVSEFWGNIFSE-IERNNLSIREQPIIERYTSQMIDN--HLCEI 114

Query: 149 YVAVQ 153
            V +Q
Sbjct: 115 LVPIQ 119


>UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus
           neapolitanus c2 RepID=D0KW30_HALNC
          Length = 287

 Score = 92.7 bits (229), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYDNPDET 58
           M           +     VG ++Q V   +     WV    +      +V V +D+PD T
Sbjct: 129 MPVTHGVLPPLKIISQRFVGSYDQ-VPHYWRVFGAWVTQTGLDTKQGVFVGVTWDDPDVT 187

Query: 59  PAEKLRCDTVVTVPGYFTLPE--NSEGVILTEITGGQYAVAVARVVGDDF-AKPWYQFFN 115
           P  ++R D          L +   S  +    I GG YA    +    +     + +   
Sbjct: 188 PKGEIRYDCGFLPQNPALLEQIPTSSDLTHQTIAGGAYAALAGQGHYHELVPDRYQRLVC 247

Query: 116 SLLQDSAYEMLPKPCFEVYLNNG--AEDGYWDIEMYVAV 152
             L  S +++  +P  E +        +  W  E+ + +
Sbjct: 248 QWLPSSGWQLDLRPALEWFAEAPWRMPEHEWRFEIRLPI 286


>UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium
           longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI
          Length = 286

 Score = 91.9 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 6/155 (3%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVY-YDNPDETPA 60
            +I    +  VAG           +   +EQ                 +        T  
Sbjct: 134 PKIILLGETEVAGLRGTTSLSDNQLPGLWEQFHGLNKDF-FTTSAGYGICETQKTAYTKD 192

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
                  ++              +    +  G+YAV   R    +  K +   F + LQ 
Sbjct: 193 GDALYSVMIG-GPVKDFDCLPLELAKKTLRAGRYAVFTHRGTLGNLYKTYQYIFGTWLQT 251

Query: 121 SAYEMLPKPCFEVYLNN--GAEDGYWDIEMYVAVQ 153
           +  E+  +  FEVY +     +D   ++++++ ++
Sbjct: 252 TREELDDREDFEVYEHEILSFDDPDNEVKIFIPIK 286


>UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella
           piezotolerans WP3 RepID=B8CLS6_SHEPW
          Length = 303

 Score = 91.9 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%)

Query: 5   IKQEEKRTVAGFH--LVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPD 56
           I+  +  TV G    + G       +   V   + +L   +D    +    + V      
Sbjct: 140 IEHRQAFTVYGLSSPIKGVLSDAPDFSSIVPDTWLRLFDIIDGVLPLAGNMLGVVDTLSL 199

Query: 57  ETPAEKLRCDTVVTVP----GYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
           +T  + +R    + +              E +    I   +YAV       ++F++    
Sbjct: 200 KTEQQSIRYWAGLELDAEQRQSLQTLLTEEKLCSLTIPSQEYAVVAYSGTVNEFSQLVEW 259

Query: 113 FFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWD-IEMYVAVQPK 155
                L +S +  L     E Y    +       +E ++ ++ K
Sbjct: 260 LICDWLPESGFVSLDGYELESYGKITSTITDLKHMEYWLPIKAK 303


>UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales
           RepID=C6CRA3_PAESJ
          Length = 297

 Score = 91.9 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 11/159 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGP-----WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPD 56
             +I +     + G++         + + +   +           I  K   A  Y  P 
Sbjct: 143 KPDIIERPATRIIGYNYPTNLNNERYFEEIPGFYAHFGNHEYFMRIPNKARPAFAYGIPH 202

Query: 57  ETPAE-KLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF-AKPWYQFF 114
               +          V  +  + E   G    E+  G+YA         +     W   +
Sbjct: 203 GYGEDGAFSFLIGEEVTSFAEVEE---GFACLELPSGKYAAFR-NGTMPEIGQNAWKYIY 258

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            + L +S YE    P FEV     +      + +Y+ ++
Sbjct: 259 GTWLPNSNYERGEGPDFEVTDVLNSTPQKISMTIYIPIR 297


>UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RQZ2_CLOCL
          Length = 272

 Score = 91.5 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 12/159 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPA 60
           +  IK      V     + P  +   K +++L  +    NI       A+YYD    T  
Sbjct: 120 DITIKSIPSYKVIAVRDIIPTYEGEGKLWDELCAFAGKNNIKAIGPSYAIYYD----TGY 175

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITG-GQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           ++   D  V +     + E    V + E+    + AV   +    +    +       L 
Sbjct: 176 KESDVDVEVVMTISGDIAETV-RVKVKELEAVDEMAVVFHKGHFHEMTSAYRAL-AIWLS 233

Query: 120 DSAYEMLPKPCFEVYLNNG---AEDGYWDIEMYVAVQPK 155
            + YEM   P   +Y            +  E+   V  K
Sbjct: 234 ANEYEM-NGPIRAIYHKGPWSEQNPEEYLTEIQAPVVKK 271


>UniRef50_A5V1E8 Transcription activator, effector binding n=1 Tax=Roseiflexus sp.
           RS-1 RepID=A5V1E8_ROSS1
          Length = 155

 Score = 91.5 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 22/161 (13%)

Query: 1   MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNIVPK--EWVAVYYD 53
           ++  I+      +         + G +   ++ GFE +  W   +   P   + + +   
Sbjct: 9   LHVTIRDLPPTMIVYTSVLLQQMKGSYNDQIRDGFENIKDWARQQGYDPSALKVIGI--- 65

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
            P+   A+ +  +  + +      P N+E +   ++ GG+YA+           +   +F
Sbjct: 66  -PNINGAQLIGYECALELE---IAPLNTEDIHTKQLPGGRYAILSLEKDSATIGETIRRF 121

Query: 114 FNSLLQDSAYEML-PKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           F   +      +   +P +E+Y           ++  V +Q
Sbjct: 122 FAEYVPQHQLTVDLRRPNYEIYY-------EHVMDFCVPIQ 155


>UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter
           vinelandii DJ RepID=C1DQ04_AZOVD
          Length = 325

 Score = 91.5 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 50/158 (31%), Gaps = 10/158 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKN--IVPKEWVAVYYDNPDETP 59
              ++    + V      G +   V+  + +    +D     +   + V +  DNP+ TP
Sbjct: 171 QVRVESFPSQPVLAMRFYGSYA-LVEDNWRRFAECLDRAGFPLADAQAVGIVQDNPEITP 229

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
            + +R D    V   F     +  +    +   ++A    R         +    +    
Sbjct: 230 NDLVRYD-CAIVDAGFDREHPA--LSRLILPAARFACLEHRAPYSHIFPVYRTIGSVWGP 286

Query: 120 DSAYEMLPK--PCFEVYLNNGAEDGYWD--IEMYVAVQ 153
            S            E Y      +G  +  +++ +A++
Sbjct: 287 RSGECFGAGGTGTLERYRQPPWLNGGGEQWLDVTIALK 324


>UniRef50_A4BA46 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea
           blandensis MED297 RepID=A4BA46_9GAMM
          Length = 293

 Score = 91.5 bits (226), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 49/163 (30%), Gaps = 19/163 (11%)

Query: 2   NYEIKQEEKRTVAGF--HLVG------PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
           +  ++ +      G    + G       +E  +   ++        +    +  + +  D
Sbjct: 136 HVRLEHKPAFDFCGLPTRINGLLSGQPNFEDRIPAAWQHFQQLTHRRLPTDRPRIGL-ID 194

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
              +    +L   T +      + P     +    +    YAV   +   D F       
Sbjct: 195 TFSQPTLGQLVYWTGIE----QSKPSAPVFLEKLSLPTSDYAVLPYQGPIDHFKHAVTWL 250

Query: 114 FNSLLQDSA-YEMLPKPCFEVYLNNGAEDGYWDI---EMYVAV 152
               L ++  +    +  FE YL   +E    ++   E ++ +
Sbjct: 251 LAEWLPNADVHHSNNRFEFERYL--PSETAGSEMVNAEYWLPI 291


>UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus pumilus
           RepID=A8FC61_BACP2
          Length = 149

 Score = 91.1 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVK-KGFEQLMMWVDSKNIVPK----EWVAVYYDNP 55
           MNY+I+      +      GP+      +  ++   W++   +  +        V  D+P
Sbjct: 1   MNYKIEIVSNMKMVYMRNKGPYGSKENVEMMKRFKQWINQHQLNDELKEYGIYGVPQDDP 60

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
            +   EK R D ++     F+  +    V    + GG+YAV       +     W Q   
Sbjct: 61  GKITPEKCRYDLMLMTNRDFSKDQM---VQTRHVEGGKYAVFTVTHTTEKVNLFWSQL-P 116

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
            ++Q++   M P    E Y      +     E  + +
Sbjct: 117 QMIQNNQLNMRPASIMERYR-----EEEGMCEFLLPI 148


>UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax=Methanomicrobia
           RepID=B8GHG4_METPE
          Length = 155

 Score = 91.1 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 10/157 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMW-VDSKNIVPKEWVAVYYD---NPDE 57
             +I +   + V G    G +   +     +L ++ +  ++++    V + ++       
Sbjct: 3   EIQIIEVLPQLVLGMRQKGAYRD-IPAMLGELYIYGISHQSVLTGPPVFICHEGSVEEAM 61

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
              E    D  V  P   ++ E    + + E+ GG+ A  + R   +D    + + F   
Sbjct: 62  VANETGDADMEVAFPIEGSI-EGEGPISIYELPGGRMAKVLHRGPYEDCGPTYTRLFA-W 119

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
           +++    +   P  EVYLN+       ++  E++V +
Sbjct: 120 IEEQGLAVT-GPVREVYLNDPTLVKPEELMTEIHVPI 155


>UniRef50_Q3DSM6 Bacterial transcription activator, effector binding domain
           superfamily n=8 Tax=Streptococcus agalactiae
           RepID=Q3DSM6_STRAG
          Length = 143

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 24/153 (15%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
           ++++I ++    +AG                  +  V S     ++ + +    PD    
Sbjct: 2   LSFQIVEKPAMILAGVT----------------LENVKSNQEGIQQAIGICKTQPD---- 41

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQFFNSLLQ 119
              R D   T     ++     G+ +  I    YAV   +        + W +      Q
Sbjct: 42  --FRFDYSATYQVETSVQAPK-GLEIIRIPSATYAVISVKGPMPSSLQETWRKIIQGFFQ 98

Query: 120 DSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
           ++  +    P  E+Y +   +D  + +E+++A+
Sbjct: 99  ENNLKPANSPNLEIYSSQHPQDTDYQMEIWLAI 131


>UniRef50_D1AKN1 Transcription activator effector binding protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1AKN1_SEBTE
          Length = 155

 Score = 90.3 bits (223), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 12/160 (7%)

Query: 1   MNYEIKQEEKRTVAG--FHLVGPWEQT-VKKGFEQLMMWVDSKNIVPKEWVAVY-YDNPD 56
           M   IK+  + T+ G     VGP     + K + +      +K     E +  Y   +  
Sbjct: 1   MKAVIKELPEITIYGKKTKDVGPKTVGDLPKAWGEFFE--AAKGKFNPEHMNSYGLSDNM 58

Query: 57  ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG--DDFAKPWYQFF 114
               E       +    Y  +PE  E +    +   +YAV   +     D+ +K     +
Sbjct: 59  RMTEELFDYTIGMEKESYTEIPEGFEEIK---LPANKYAVYTFKGKIEGDNISKFIGDIY 115

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDG-YWDIEMYVAVQ 153
              + +   E +P+  FE Y     +D    ++++YV ++
Sbjct: 116 MKWMPEEKLECIPEYSFEYYDERWIDDSDESELDIYVPIK 155


>UniRef50_D2NR94 Uncharacterized protein conserved in archaea n=2 Tax=Rothia
           mucilaginosa RepID=D2NR94_9MICC
          Length = 165

 Score = 90.3 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 12/159 (7%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI---VPKEWVAVYYDNPDET 58
              I++     VAG   V P +      +++L        +      +++ V        
Sbjct: 13  EPRIEEHPAMVVAGVSQVFPLDGDFSSLWDELNQKASPAMLDVLKVTQYLGVCT---QPN 69

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
           P  ++R      V    +      G+ + E+    YAV        +     +  F    
Sbjct: 70  PKGQVRYTAGFLVSEPAS--AAKLGLGVLELPASTYAVVEVTGPISESIPAGFASFEEAF 127

Query: 119 QDSA--YEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
                 Y  +     EVY     +   + +E++V +  +
Sbjct: 128 FAKNPQYRPVGG--LEVYGRGDMQAADYRMELWVPLVKR 164


>UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales RepID=C7XCD5_9PORP
          Length = 289

 Score = 90.3 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 1   MNY--EIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEW---VAVYYDNP 55
           MNY  E+K+     +   H  G     +     +LM W  +K ++       ++VY    
Sbjct: 1   MNYTFELKELHATHIVYLHHQGD-MSLIPSSIRKLMQWAGAKGLINGPANKLISVYQH-- 57

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                ++L  D  +TVP      E    +    ++GG YA+    +  D+    W   + 
Sbjct: 58  ---EGKELSVDIGLTVPQEV---EGENEISKGLLSGGLYAIGHFEIGTDEIPAAWSLMYT 111

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWD---IEMYVAVQ 153
            L      +      FE+Y +   +    D   I++ + VQ
Sbjct: 112 -LTSKHQCKPCAGKSFEIYQSIPLDQHPQDKCMIDLCIPVQ 151


>UniRef50_B3PD71 Transcriptional regulatory protein n=1 Tax=Cellvibrio japonicus
           Ueda107 RepID=B3PD71_CELJU
          Length = 172

 Score = 90.3 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 14/158 (8%)

Query: 2   NYEIKQEEKRTVAGFHL--VGPWEQTVKKGFEQL-MMWVDSKNIVPKEWVAVYYDNPDET 58
              I++     +AG            + + ++     W      V +    +        
Sbjct: 18  EPRIERSGPLLIAGLCQPLDSEAFTRIPQLWQDFTSQWNQLAQRVGEVNYGLCM----RA 73

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A  +      T+  +  LP     +    I    YAV                 F+  L
Sbjct: 74  DAGAIHYLAGCTLWDFDNLPAA---LSRFVIPLQDYAVFHHEGHVSTIRHTIDAIFDRWL 130

Query: 119 QDSAYEMLPKPC---FEVYLN-NGAEDGYWDIEMYVAV 152
             + +++  +     FE Y        G  DIE++V V
Sbjct: 131 PQARFQLATQQSLHFFERYGEAFDPVTGEGDIEIWVPV 168


>UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PTW1_9CLOT
          Length = 286

 Score = 90.0 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 16/164 (9%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-----VKKGFEQLMMWVDSKNIVPK----EWVAVY 51
           MNY I  +E   V G               V K +   M     + +  K      + + 
Sbjct: 127 MNYRIFDKESFMVVGKQAKISMIDEQNFSQVPKFWRGCMKEGSYQWMSSKAGKLGILGIS 186

Query: 52  YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPW 110
            D       ++      +             G +   I    +A   A     +      
Sbjct: 187 KDFDKY--KDEFNYMMAIEKIQSTIPK----GYVSANIPAATWAAFEAVGPVPEVLHDLL 240

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
            + ++  +    Y+    P  E+Y         +  E+++ ++ 
Sbjct: 241 RRIYSEWMPSMGYQHDCAPDLEIYPIGDMFSRNYSCEIWIPIKK 284


>UniRef50_D1AJG5 Transcription activator effector binding protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1AJG5_SEBTE
          Length = 153

 Score = 90.0 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 1   MNYEIKQEEKRTVAGF--HLVGPWEQT---VKKGFEQLMM---WVDSKNIVPKEWVAVYY 52
           M YEI +   +T+AG          Q    + K +E+      +  ++N    +   VY 
Sbjct: 1   MKYEIVEIPTKTMAGISIRTTNENMQAVNDIGKLWEEFWNKNIFSFTENKKNNKMYGVYT 60

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAK-PWY 111
            N +    +         V        N++   +  +   +YA    R   D+ A+  W 
Sbjct: 61  -NYEGDFTKPYDFYACCEVSSEG---NNNDEFSVISVPESKYAKFSLRGNYDEAAEKLWN 116

Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             +     ++  +      FEVY N+G +     +E+YVAV
Sbjct: 117 TIW-----ETKLDRKYTYDFEVYHNDGNDPENLLLEIYVAV 152


>UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lactococcus lactis
           RepID=O87252_9LACT
          Length = 265

 Score = 90.0 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 21/165 (12%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW----EQTVKKGFEQLMM-------WVDSKNIVPKEWVA 49
           MNY I  + +  + G     P     + ++ K +++            +     P   + 
Sbjct: 105 MNYLITNKPEMMITGIKESYPNITVGQASIPKFWDRFNESDLFNQVINEKSEHSPNTILG 164

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108
           +          E       V      T     + +    +    +AV  A     +   +
Sbjct: 165 ICL----PREGEAYDYFIGVYTDEKTTA----DKLETITLPASDWAVFKAVGKVPEAIHQ 216

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAV 152
            +   + S    + Y     P FE Y  +          E+++ +
Sbjct: 217 TYQDIYESFFPSTTYTQKKAPDFESYPLDLNPMSENHITEIWIPI 261


>UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC 7120
           RepID=Q8YZW0_ANASP
          Length = 290

 Score = 89.6 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 60/154 (38%), Gaps = 9/154 (5%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAE 61
              IK+     VA    + P   ++ + + ++  ++    +   ++ A  + +P     +
Sbjct: 140 EVVIKKVAPIQVASIRQILPDNPSIGQLYGEISEYLAQNGVKAGDYYAGIWHDPGYKDTD 199

Query: 62  KLRCDTVVTVPGYFTLPENSEGVILTEITGG-QYAVAVARVVGDDFAKPWYQFFNSLLQD 120
            +  + V+++ G       +E + + E+ G    A  +     +  A+ +    +  ++ 
Sbjct: 200 -IDAEAVISIEGSIK---GNERIKIYELPGSETTACLIHHGSYETLAQAYATLVS-WIEA 254

Query: 121 SAYEMLPKPCFEVYLNNGAEDGY--WDIEMYVAV 152
           + Y +   P  EVY+  G E     +  E+   V
Sbjct: 255 NGYNIT-APNREVYIIGGNEQNNDSYVTELQFPV 287


>UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=uncultured archaeon
           RepID=D1JG23_9ARCH
          Length = 332

 Score = 89.6 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMM--WVDSKNIVPKEWVAV----YYDNP 55
              +K    + V      G +E+ + +   +L    +         +   +    Y+DN 
Sbjct: 179 EPIVKDVSSQRVLSRREKGTYEEVIPRLIGELSGRVFGPENQRARVKCTGIPITIYHDN- 237

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
            E   +    +  + V G  T+        +  +  G+    + +    D    +   F 
Sbjct: 238 -EYKEKDADIEVALPVSGNITV---GPEYEVKILDEGKVVSYIHKGPYQDAGGAYRAVF- 292

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAVQ 153
             +     +++     E+YLN+  E    ++  E+ V V+
Sbjct: 293 EYIDKKGLKVVGNY-RELYLNDPKETPETELLTEIQVPVE 331



 Score = 47.2 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETPA 60
            YE+K  ++  V  +   GP++      +  +  ++D K + V   +  +Y ++P ETP 
Sbjct: 261 EYEVKILDEGKVVSYIHKGPYQDA-GGAYRAVFEYIDKKGLKVVGNYRELYLNDPKETPE 319

Query: 61  EKLRCDTVVTVPG 73
            +L  +  V V  
Sbjct: 320 TELLTEIQVPVED 332


>UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi
           DSM 13479 RepID=UPI0001C357C1
          Length = 307

 Score = 89.6 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 3   YEIKQEEKRTVAGF--HLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETP- 59
             +++ ++ +V G+     G +   + + + +     D  +    +   +  ++    P 
Sbjct: 152 VTMREAKELSVVGYCSSTKGGFA-GIGRCWRRFHAKKDRISGCTNKEFLIGINDYSYYPC 210

Query: 60  ---AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-FAKPWYQFFN 115
               +  R      V   +T P+   G+    +  G+  V   R   +D         + 
Sbjct: 211 KGLDQVFRYIAGAEVMQEYTAPK---GMQKFTLPAGRCVVFSFRGRNEDSLQPVVEYIYG 267

Query: 116 SLLQDSAYEMLP--KPCFEVYLNNGAEDGYWDIEMYVAV 152
               DS        +  F  Y     E G  +I+++V V
Sbjct: 268 EWFPDSTCRFDEDRRYDFARYGEQLDEHGESEIQLWVPV 306


>UniRef50_Q2PJA4 ORF3 n=1 Tax=Enterococcus faecalis RepID=Q2PJA4_ENTFA
          Length = 164

 Score = 89.2 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 22/167 (13%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKN---------IVPKEWVAV 50
           M+ ++ ++    + G     P + Q   +   +L   +  +          + P + V V
Sbjct: 1   MDVKLIEKPAIQIVGVCQKVPLQYQGENQAIMELEQRITPQQRAEMHTFDDVYPHQVVNV 60

Query: 51  YYDNPD--ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107
            +D  +   T   ++                  E +    +    +AV            
Sbjct: 61  SFDFQEGRTTEGGEMTHMIGFATSQ----ENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQ 116

Query: 108 KPWYQFFNSLLQDSAYEMLPKP--CFEVYLNNGAEDGYWDIEMYVAV 152
           + W + F+  L  S Y+++  P   F  Y   G  +  +  E+++AV
Sbjct: 117 ETWARIFSEWLPSSGYQVVAAPEISFTQY--QGPAEAKYS-EIWLAV 160


>UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n=1 Tax=Bacillus sp.
           NRRL B-14911 RepID=Q2BBL2_9BACI
          Length = 311

 Score = 88.8 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 18/166 (10%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE--WVAVYYDNPDETP 59
                +           VGP+ + +   +E L  W  S+ ++  +     V  +NP  TP
Sbjct: 152 KVRTIELPVCATVNRQSVGPYTEGIPDAWEDLYHWTTSRELMKPDPFTFGVPRNNPYITP 211

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD-----DFAKPWYQFF 114
            EK R D  + +            +      GG++ V       D        + + + +
Sbjct: 212 PEKTRYDCRIAIDQDKIPEGEPAFL----FKGGKHVVYEFDEPVDYSERGRLIECYSELY 267

Query: 115 NSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIE-----MYVAVQPK 155
           +  L  S Y  L  P  E+ ++     G   +E     + +A++PK
Sbjct: 268 SFWLPRSGYRYLDNPV-EL-VDVKPLKGSLSVECKIRAICLAIEPK 311


>UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=Clostridium
           RepID=A7FVD8_CLOB1
          Length = 294

 Score = 88.8 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 22/168 (13%)

Query: 3   YEIKQEEKRTVAGF-----HLVGPWEQTVKKGFEQLMM------WVDSKNIVPKEWV-AV 50
           Y I ++E   V G       +     + + +   ++          ++        +   
Sbjct: 130 YRIVEKEAFKVFGTGFETTRINYAAYKEIPEFINKIFKDGTHDRINEALGNSKGSLLDGF 189

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD---FA 107
           +YD          +      +P      E S+   + ++    +AV        D     
Sbjct: 190 HYD---FKENGTRKYMMGYEIPR----TEISDEFTILQVPKLTWAVFEGYGAMPDNLIIQ 242

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
             W + ++     S +E +  PC E    N  +   +  E+++ V+ K
Sbjct: 243 DIWRRIYSEWFPSSGFEQVEGPCIEKNFWNNKKHDEYKCEVWIPVKTK 290


>UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n=1 Tax=Bordetella
           petrii DSM 12804 RepID=A9I8N6_BORPD
          Length = 291

 Score = 88.4 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVK--KGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA 60
             +++            G   Q       F +L   + S +++   +  + YD P   P 
Sbjct: 140 VTVRELPPTRFWAVRYEGMSSQKYACWNDFRRLFAHLRS-DLLTGPFFGLTYDTPMFVPT 198

Query: 61  EKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
             +R    V VP  F  P+  +   +  + GG+ A+  A    D     +    +  L  
Sbjct: 199 PFMRYYCGVQVPPGFG-PKPKDAFEI-TLPGGRIAMCEAHCTADGLPALYANLLDQWLPR 256

Query: 121 SAYEMLP---KPCFEVYLNNGAEDG-YWDIEMYV 150
           S Y +        FE +  N   +     +  ++
Sbjct: 257 SGYSLRASCFAERFETFPTNWEFNPRRVQLNCWI 290


>UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=Proteobacteria
           RepID=Q4K667_PSEF5
          Length = 295

 Score = 88.4 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 13/150 (8%)

Query: 8   EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIV--PKEWVAVYYDNPDETPAEKLRC 65
              + + G         T+ + +++          +  P     +           + R 
Sbjct: 152 LASQRIIGMAWQQDDPGTIAELWQRFEPREQEIQRLAEPVGTYGIC----QPLEDGQWRY 207

Query: 66  DTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEM 125
              + V     L     G++  EI    YA            + +   ++  L  +    
Sbjct: 208 VAGLPVAADAPL---VPGMVELEIPARHYARVEHHGSVATLPETFRAAYSEWLPAAGLMP 264

Query: 126 LPKPCFEVYLNN---GAEDGYWDIEMYVAV 152
           +    FE Y      G       +E+Y+ +
Sbjct: 265 IDAVEFE-YTGERFLGPMHPDSVVELYIPL 293


>UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=Actinomycetales
           RepID=B8HE83_ARTCA
          Length = 288

 Score = 88.0 bits (217), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 17/166 (10%)

Query: 1   MNYEIKQEEKRTVAG------FHLVGPWEQTVKKGFEQLMMWVDSK-----NIVPKEWVA 49
           M+  I       + G          GP    ++     L     ++     N  P   + 
Sbjct: 125 MDTRIADRPAFRLVGHAARVPLIHQGPNP-HIQAHIASLPAAEHARLKALCNTEPAGLLQ 183

Query: 50  VYYD-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVG-DDFA 107
           V  D +PD      L     V V     +PE+ + +   E+  G +AV            
Sbjct: 184 VSADVDPDYAEGSDLTYLHGVAVSEGTPVPEDLDAI---EVPAGAWAVFRTSGAYPAALQ 240

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
             W          + + + P P     L+   +      E+++ V+
Sbjct: 241 STWAATAAHWFPSNPWRLRPGPSVVAILDRADDFSTATTELWLPVE 286


>UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes
           RepID=B7HW35_BACC7
          Length = 281

 Score = 88.0 bits (217), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 29/166 (17%)

Query: 1   MNYEIKQEE-KRTVAGFHL---VGPWEQTVKKGFEQ-----LMMWVDSKNIVPKEW---- 47
           M Y I+  + +  + G           + +   +        M  +   +    +     
Sbjct: 128 MEYRIENLDFELRIVGKSKSVKTSSAFKKIPTLWNNAKKDGFMQELIDMSWEDPKCKLES 187

Query: 48  -VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDF 106
            + V   +   T  E       V   G     E    +    I    +AV        + 
Sbjct: 188 LLGVCGKDAAITDEE-FSYFMGVRYDG-----EVPTDMETLVIPVSTWAVFP------NI 235

Query: 107 AKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
              W + ++  +  S YE+   PC E Y            E++V V
Sbjct: 236 VDAWKRLYSEWVPTSKYELANLPCIECYY---GPKHKPRHELWVPV 278


>UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1
           Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM
          Length = 295

 Score = 88.0 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 13/161 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK------EWVAVYYDNP 55
             +I++   R        G + + + K F+ L+ W+   N   +       ++ + Y NP
Sbjct: 132 EIKIEEYPSRECVMITHKGEYLEGM-KTFDILVSWLVENNFYSETSVKSIPFITIPYANP 190

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQF 113
            E+     RCD  +++     +  N  G+    I+ G +AV       +   F       
Sbjct: 191 LESAGSDYRCDIAISINC--KVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITNV 248

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYVAV 152
               L ++ +E LP P    ++N+       ++  ++ + V
Sbjct: 249 LTEWLPETQWEPLPAPILFEHINSPLFVPETELITKVCIPV 289


>UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8D1P7_HALOH
          Length = 231

 Score = 87.6 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPA 60
              I + +   VA +       +   + +E +  W    N++         +DNP  TP 
Sbjct: 79  EVRIVELKPVWVASYRAEAESPE--PRAWEVIFKWAKKYNLLQLPGTRFFGFDNPSPTPD 136

Query: 61  EK-LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
           +     +  VT+P         E + + + +GG YAV        D  + W Q +   ++
Sbjct: 137 KAVYGYEFWVTIPHKNF--NIPEEMKIRKFSGGLYAVTNTNFREFDVGERWKQLY-KWVK 193

Query: 120 DSAYEMLPKPCFEVYLN---NGAEDGYWDIEMYVAVQP 154
           +S +      C E ++       +     +++Y  ++P
Sbjct: 194 ESEFSYREGICLEEHITLTGYNLDINTVQLDLYEPIKP 231


>UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium
           BAL38 RepID=A3J103_9FLAO
          Length = 115

 Score = 87.6 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
           DN D  P         + V  +  +P     + + EI+ G YAV   +    + A  +  
Sbjct: 14  DNFDFNPNTPFVKWAAIAVSSFDFIPA---DMEILEISEGLYAVFNYKGNQSNAAAFFNL 70

Query: 113 FFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQPK 155
            +   L  S +E+  +P FE+    Y NN  +      E+++ ++ K
Sbjct: 71  IYTEWLPKSDFELDNRPHFEILGTKYKNNAPDSEE---EIWIPIKRK 114


>UniRef50_C6XQS4 Transcription activator effector binding n=1 Tax=Hirschia baltica
           ATCC 49814 RepID=C6XQS4_HIRBI
          Length = 170

 Score = 87.3 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 20/167 (11%)

Query: 2   NYEI-----KQEEKRTVAGFHLVGPWEQ---TVKKGFEQLMMWVDS-KNIVPKEWVAVYY 52
            Y+I     +  E  +VAG       ++    +   ++     +    N V      V  
Sbjct: 5   EYKIPKTRYEFREGFSVAGLRKQFDVDEKIDGIPALWKAFGPQIAEVANAVTDACYGVI- 63

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
                 P   +     + V  +  L ++ + +    I    Y V        +  + W  
Sbjct: 64  --GASNPDGDVDYLAGIKVTSFDGLDKDFDRM---VIPDQNYLVVTHEGDVSNIQQTWDW 118

Query: 113 FFNSLLQDSAYEMLP----KPCFEVYL-NNGAEDGYWDIEMYVAVQP 154
            F    +    E++      P FEVY      +    +I+++V VQP
Sbjct: 119 IFVEFPKSLGLEIIEVFAMTPEFEVYDARYNPQTREGEIDIWVPVQP 165


>UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium RepID=A5N0X9_CLOK5
          Length = 275

 Score = 87.3 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 13/157 (8%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP-KEWVAVYY--DNPDET 58
           N  +K+ E  TV            +     ++   V    + P    +++YY  +  ++ 
Sbjct: 123 NIILKEREPLTVLSIRDNIS-MDYIGSLIGKIYENVYKNGLKPIGNIMSIYYLQNEEEDF 181

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
             +    +  + V   F+    S  +    + GG +A         + ++ +       +
Sbjct: 182 NHDNADVEVCIPVDKEFS----SNEISTRIMEGGLHAYTTFVGPYSEISQAYGAMM-EWV 236

Query: 119 QDSAYEMLPKPCFEVYLNNGAE---DGYWDIEMYVAV 152
           + + Y++  +P FE Y+    E      +  E+Y  V
Sbjct: 237 KHNKYKIS-RPPFEKYIKGPEEGCNPQDFVTEVYFPV 272


>UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GD23_9ACTN
          Length = 305

 Score = 86.9 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 35/177 (19%)

Query: 4   EIKQEEKRTVAGFHLVGPWE-------------QTVKKGF---------EQLMMWVDSKN 41
            I   ++  + G                     + ++  +         E+L    D   
Sbjct: 140 RIVTHDEMRLIGIAFPCDAAMDAPLIQMADEGREELRHFWGSASQAGDIERLFSLADDGG 199

Query: 42  IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARV 101
             P+    V     +      L     V+       P  ++ + ++    G +AV     
Sbjct: 200 --PRRIFGV-----NSVRRGDLTYHIAVSSSE--EAPAWTDEIRVSR---GSWAVFECVG 247

Query: 102 VGD-DFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH 157
             +   A+ +++ +   L  S YE+      EVY +       +  E+++ V  ++ 
Sbjct: 248 PCEVATAEHYHRIYAEWLPASGYELAHDVSLEVYPSGDFSSTGYRSEIWIPVVERNE 304


>UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium
           hominis ATCC 15826 RepID=C8N9B6_9GAMM
          Length = 263

 Score = 86.9 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 10/153 (6%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEK 62
             ++     TVA     G   Q +   F QL   +  +     +  A    +P   P   
Sbjct: 116 VHLETRAPVTVAMLAHSGEC-QRLGDTFYQLESLLRLRGAETSQARAFSI-HPAIDPLHA 173

Query: 63  LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSA 122
            +       P Y   P     +   EI GG+YAV   R    D    +  F       + 
Sbjct: 174 DKHVAASVAPEYAMAP-----LQAGEIAGGRYAVLRHRGPYADLDSVYDWFVQEWFPAAG 228

Query: 123 YEML-PKPCF-EVY-LNNGAEDGYWDIEMYVAV 152
             +   +P   E Y  ++        +++ + +
Sbjct: 229 QHIASDRPVILEYYDPSSDIPVQQKRVDICIPL 261


>UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I964_9CLOT
          Length = 286

 Score = 86.9 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 20/167 (11%)

Query: 1   MNYEIKQEEKRTVAGF-------HLVGPWEQTVKKGFEQLMMW----VDSKNIVPKEWVA 49
           M+Y+I ++E   +           +     + +   + +        V   N    +   
Sbjct: 128 MDYKIVKKESFKLLVKVKEFRVESISEDNNEDIPNFWNECAENGVFDVLKSNTTNHDIYG 187

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDD-FAK 108
           V    P    ++       +   G     +  EG  + ++    + V        D   +
Sbjct: 188 VC--KPISKESKYFDYGIAMKYDGG----DVPEGYKVWDVHPTLWGVFKCVGENGDCIGE 241

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK 155
            W + FN  L  S Y ML    FE Y  +   D     E+++ V+ K
Sbjct: 242 MWNRIFNEFLPSSDYTMLDDIDFEFYKEDNNTD--CFCEIWIPVEKK 286


>UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax=Roseiflexus
           castenholzii DSM 13941 RepID=A7NGL3_ROSCS
          Length = 156

 Score = 86.5 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 1   MNYEIKQEEKRTVAGFH-----LVGPWEQTVKKGFEQLMMWVDSKNI--VPKEWVAVYYD 53
           ++  I+      VA F        G +   +++GF Q+  W   + +    +  + +   
Sbjct: 9   LHVTIQDLPPFRVACFFCNLQLATGQYSNQIQQGFRQIKSWALQRGLDLTRQRIIGI--- 65

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQF 113
            P     +    D  V +P    + ++S    +    GG+YAV +         +   +F
Sbjct: 66  -PHVRDGQLTGYDCCVELPENGVIDDHS--FQMKRAPGGRYAVLLLEKNSAVIGEAIGRF 122

Query: 114 FNSLLQDSAYEMLP-KPCFEVYLNNGAEDGYWDIEMYVAV 152
           F          + P +  +EVY              +V +
Sbjct: 123 FTEYAPAHHLVVDPQRFSYEVYDETFMT-------YFVPI 155


>UniRef50_A3I0M8 Transcriptional regulator, AraC family protein n=1 Tax=Algoriphagus
           sp. PR1 RepID=A3I0M8_9SPHI
          Length = 162

 Score = 86.5 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSK-NIVPKEWVAV-YYDNPDE 57
           M  ++++   +T+ G   +     Q +   +      ++ K  + P ++ ++  Y    +
Sbjct: 1   MEVKVEEITSKTLFGKKTITTLGSQDISALWRPFRQAINKKEGLNPSDYYSIQRYGKDMQ 60

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
           + +  L  +               +G     + GG+YA         +       F N+ 
Sbjct: 61  SKSLSLNTEFEKCAAIEIVKDACPDGFEEIVLDGGKYATFEYARNMGEIQTILMGFLNNW 120

Query: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDIE-MYVAVQPK 155
           L +SA+E+  +  FE +  +        +E +++ ++ K
Sbjct: 121 LPNSAFELDDRNHFETFGPDYDPFSVDSVEVIWIPIKEK 159


>UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC type n=2
           Tax=Marinomonas RepID=A6VR73_MARMS
          Length = 306

 Score = 86.5 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 50/171 (29%), Gaps = 18/171 (10%)

Query: 2   NYEIKQEEKRTVAG--------FHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYD 53
              I+  +   + G        F     + + V + + Q++  V +        + +   
Sbjct: 137 QIRIESRDGFHIQGRSAWIRGLFSASPNFSERVPQLWSQVISEVKTV-TKGYRPIGIIDT 195

Query: 54  NPDETPAEKLRCDTVVTVPGYFTLPENSEG--------VILTEITGGQYAVAVARVVGDD 105
                  +++        P   + P    G        +    +   +YAV         
Sbjct: 196 QDHAQHPDQMLYWAGYLEPINTSSPTIFSGANPFNTTPLDTVRVPLQEYAVIPVYGKSSA 255

Query: 106 FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQPK 155
             K    F    L +S Y  +     EVY  +         +E ++ ++P+
Sbjct: 256 VEKALEWFIYQWLPESNYYGVQGYELEVYEPDYDPSSSKSYMEYWLPIKPR 306


>UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Erysipelothrix
           rhusiopathiae ATCC 19414 RepID=C8P1I3_ERYRH
          Length = 288

 Score = 86.5 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 50/166 (30%), Gaps = 23/166 (13%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-----VKKGFEQLMMWVDS------KNIVPKEWVA 49
           M   I+++E   +AG+     +E       +   ++++             +   +  V 
Sbjct: 134 MKMRIEEKESVNIAGYQKTFSYENGANLKEIPMFWDEINQSAKDLDLFKMNDHKIEGIVG 193

Query: 50  VYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAK 108
           +      +     +      +        +  EG++  E+   ++ V  A          
Sbjct: 194 LC----QQASDGFMTYLIGTSC-------DFQEGLVNVELPKSRWLVFDAVGPLPQSVQN 242

Query: 109 PWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQP 154
            W    +  L   + E+      EVY            E+++ ++ 
Sbjct: 243 TWRDIVSLYLPTCSEEIDGSMDLEVYSQEDPNSESLVTEIWLRIKA 288


>UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KR14_CLOPH
          Length = 281

 Score = 86.1 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 21/162 (12%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMM-----WVDSKNIVPKEWVAVYY 52
           M   I+++E   V G          E  +   +  L        +   N  PK  + +  
Sbjct: 128 MKCRIEKKEAFKVVGAKKTFRNDMVENLLPHFWRDLPQETYEKIIKQSNGEPKGLLGLCA 187

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
           +                +           + +    I    +A+  A     +      +
Sbjct: 188 NFGG---EHTFDYYIATSTKNSEV-----QDLDQINIPEATWAIFEAEGTVTEL---INR 236

Query: 113 FFNSLLQDSAYEMLPK--PCFEVYLNNGAEDGYWDIEMYVAV 152
            +      S Y       P  EVY +       +  E++  V
Sbjct: 237 IWQEWFPSSGYRRADNSIPDVEVYFDYDFPKENYTYELWYPV 278


>UniRef50_A4CQ28 Transcriptional regulator n=1 Tax=Robiginitalea biformata HTCC2501
           RepID=A4CQ28_9FLAO
          Length = 166

 Score = 85.7 bits (211), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 17/163 (10%)

Query: 3   YEIKQEEKRTVAGFHLVGPWEQTVK----KGFEQLMMWVDSKNIVPKEWVAVYYDNPD-- 56
             I+   +  +AG    G     +     + +++ M             +      P   
Sbjct: 2   PRIETLPETLLAGL---GREMSVIGNRTRELWQEFMPLTRKIPTRQGGDLYSVEIYPGLD 58

Query: 57  ----ETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQ 112
                 P         V V  +  +P     +    +  G YAV   +      A  + +
Sbjct: 59  YFKAFDPKRPFVKWAAVPVQSWQDMP---GELDKLVLPTGLYAVFRYKGTPQAVAPFYRR 115

Query: 113 FFNSLLQDSAYEMLPKPCFEVY-LNNGAEDGYWDIEMYVAVQP 154
                L  S Y++  +P F V            + ++++ V+P
Sbjct: 116 ILEEWLASSVYQLDNRPHFAVMGPEYKGNHPESEEDLWIPVRP 158


>UniRef50_Q28T08 Transcription activator effector binding n=1 Tax=Jannaschia sp.
           CCS1 RepID=Q28T08_JANSC
          Length = 267

 Score = 85.7 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 14/156 (8%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWE----QTVKKGFEQLMMWVDSKNIVPKEW-VAVYYDNP 55
           M +  K    +          +       +   F ++  +V    I P    ++VY    
Sbjct: 115 MEFTRKTLPAQPYIYVERECAYGPEIADAMGSAFGEIFAFVGQSGITPLSMPMSVY---- 170

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                + LR    V V       +    +    +  G     + +   D         + 
Sbjct: 171 TGMDPKILRFRGGVIVS-TDDAAKAEGAIKSDALPAGDVMHVIHKGPYDTMNLTHKALW- 228

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMY 149
             L+         P +E+Y ++  +    D+  E++
Sbjct: 229 EHLEAQG-TPGTMPTWEIYTDDPGDTAPEDLRTEIF 263


>UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius
           DSM 20547 RepID=C7NJZ3_KYTSD
          Length = 276

 Score = 85.3 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 15/162 (9%)

Query: 1   MNYEIKQ--EEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDET 58
           M+ EI +      T+       P        +EQ +  +  + + P     V  ++P   
Sbjct: 119 MSIEISETTLPSTTMVLLRGAIPSYSEEGVLWEQFIPELGRQGLTPIGPGGVVENDPTYV 178

Query: 59  PAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLL 118
            A     D  V +P           + + E+   +   A         ++   Q     +
Sbjct: 179 EAGP---DVSVWLP-VAPGTTARGPLEVHELPEQRAVKATITGPYSQISEAHAQ-MAQYM 233

Query: 119 QDSAYE---MLPKP---CFEVYLNNGAEDGYWDI--EMYVAV 152
                        P       YL++ +     D+  E+Y  +
Sbjct: 234 GQEGLTEASPGDGPVGKVVNRYLSDPSNTPEADLLTEVYRPL 275


>UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=Actinomycetales
           RepID=D1WZP5_9ACTO
          Length = 290

 Score = 85.3 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 22/167 (13%)

Query: 1   MNYEIKQEEKRTVAGFH------LVGPWEQTVKKGF-----EQLMMWVDSKNIVPKEWVA 49
           M Y + +++   V G          GP    + +       E+L       +  P   V 
Sbjct: 127 MQYRLVEKDAFRVVGRRARVPLVHEGPNP-AIAEFIRGIGREELDRIAALSDQDPAGLVG 185

Query: 50  VYYD-NPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFA 107
           V    +P      +L     V      +  E  E +    +  G +AV            
Sbjct: 186 VSDQLDPSRAEGTELDYYHGV-----VSGAEPPEDLDSLSVPAGSWAVFENEGEFPGALQ 240

Query: 108 KPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY-WDIEMYVAVQ 153
             W   F      + Y   P P  E+      E+G   + E+++ V+
Sbjct: 241 YLWRDVFTQWFPSNPYVSRPGP--EILRVRLTEEGKRAEAELWIPVE 285


>UniRef50_B1L1R5 Transcription activator, effector binding domain protein n=12
           Tax=Clostridium RepID=B1L1R5_CLOBM
          Length = 240

 Score = 85.3 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 19/160 (11%)

Query: 4   EIKQEEKRTVAGFHLV-----GPWEQTVKKGFEQLMMWVDSKNIVPK----EWVAVYYDN 54
           ++ +++K  + G  +      G +   + K +E+         I+ K    E++ +Y D 
Sbjct: 90  KVVEKDKMIIVGKEIRTTNKDGAFMAVIPKLWEEFENKKLGDKILNKVNKNEFLGLYTD- 148

Query: 55  PDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWYQF 113
            +              V    ++P+   G+    I   +Y V  A+    D   + W   
Sbjct: 149 YENKEMGLYSFMVGFQVTDTNSIPK---GMTYKVIPATKYCVVTAKGKMPDKIGEAWGYI 205

Query: 114 FNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           +     +S  +      FE+Y     +    ++++YVA++
Sbjct: 206 W-----NSGLQRTYTGDFELYDKRYDKSQNSEVDIYVAIK 240


>UniRef50_Q3AFY4 Putative uncharacterized protein n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AFY4_CARHZ
          Length = 154

 Score = 84.9 bits (209), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 7/157 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQT-VKKGFEQLMMWVDS--KNIVPKEWVAVYYDNPDE 57
           M  EI  +    + G    G  E+  + + +++    +      +  KE   +   +   
Sbjct: 1   MKPEIIFKPGFFLVGMKYEGRNEKGEISELWKKFSERIFEIKNRVNEKECYGLSIYSEKF 60

Query: 58  TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117
               +      V V     +PE    ++  E+   +YAV       D   K  ++ +   
Sbjct: 61  FATGEFLYLAAVEVVKIEEVPE---EMVAVEVDPAKYAVFTLPGEPDKLPKLIHEIYCRY 117

Query: 118 LQDSAYEMLPKPCFEVYLNN-GAEDGYWDIEMYVAVQ 153
           L++   + +    FE+Y            I  +V V+
Sbjct: 118 LKEEGLKPVGNYDFELYNERYPPNQKDSKIYFFVPVE 154


>UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei
           subsp. wolfei str. Goettingen RepID=Q0AX83_SYNWW
          Length = 152

 Score = 84.6 bits (208), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 1   MNYE--IKQEEKRTVAGFHLVGPWE---QTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNP 55
           M Y+  +++++ +           E   Q + K +  +M ++    + P     V Y N 
Sbjct: 1   MQYQFVVEEKKAQPTISVRTRTAVENLPQVLGKAYGAIMNYLFEIGVQPAGEPYVGYFN- 59

Query: 56  DETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFN 115
                + L  +  + V         ++ +  +EI  G+    +     +     +     
Sbjct: 60  --MDMQDLDLECGLPVAQPVV---GNDKLKPSEIPAGKQVSCLYTGPYNQIEPAYNAIMA 114

Query: 116 SLLQDSAYEMLPKPCFEVYLNNGAEDGYWDI 146
             +  + Y      C+E YLN+ AE    ++
Sbjct: 115 -WIPANGYTPT-GVCYEFYLNDPAETPENEL 143


>UniRef50_B8FW41 Transcription activator effector binding n=6 Tax=Clostridiales
           RepID=B8FW41_DESHD
          Length = 146

 Score = 84.6 bits (208), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 1   MNYEIKQEEKRTVAGF----HLVGP-WEQTVKKGFEQLMM---WVDSKNIVPKEWVAVYY 52
           MNYEI    ++ V G         P  +Q +   +++ M    WV  +N      + +Y 
Sbjct: 1   MNYEIVTLPEKIVVGVTARTSHTDPQCQQVIGGLWQKFMGEGIWVSIQNQANPYCLGLY- 59

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKPWY 111
                             V         +  +    I  G YA+   +     D A+ W 
Sbjct: 60  ---SGYDETSYDVTVGAEVTK-----NGNPELTEKIIPAGSYALFRIKGDVVKDVAEAWD 111

Query: 112 QFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
           + +   L     E      FE YL+N  E+G  +I++Y+A++
Sbjct: 112 KIWT--LP---LERSFTGDFEEYLSN--ENGVAEIKIYIALK 146


>UniRef50_Q49ZZ7 Putative uncharacterized protein n=1 Tax=Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305
           RepID=Q49ZZ7_STAS1
          Length = 154

 Score = 84.2 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 21/163 (12%)

Query: 1   MNYEIKQEEKRTVAG---FHLVG-PWEQTVKKGFEQLMMWVDSKNIVP------KEWVAV 50
           MNY I++    +V G    +  G   ++ +   + +         ++          + V
Sbjct: 1   MNYIIEELPTLSVIGEKKIYATGQKAQENIFMFWMEFDDSGKKDQLLELGNNQLPGLLGV 60

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV-GDDFAKP 109
                    + ++     VT    +    N       E+ GG+Y V  A+    +   K 
Sbjct: 61  C----KPHDSGEIHYLIGVTSEHKYDKWRN------IELEGGRYLVFDAKGPVPESIKKA 110

Query: 110 WYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAV 152
             Q    +L    YE+   P FE+Y      +  +  E+++ +
Sbjct: 111 MQQINKDILPKLDYEIRHAPFFELYKEGAIREDDYVTEIWLPI 153


>UniRef50_C9RC23 Transcriptional activator ligand binding domain protein n=1
           Tax=Ammonifex degensii KC4 RepID=C9RC23_AMMDK
          Length = 158

 Score = 84.2 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 7/160 (4%)

Query: 1   MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNI-VPKEWVAVYYDNPDETP 59
           M   IK+     VA     G   ++     ++L  W+ +  + +    V VY  NP   P
Sbjct: 1   MEITIKELPPTKVAYLRKKGD-MESFPLAVQELEKWIVNAGLAISGPPVLVYLSNPVGMP 59

Query: 60  AEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQ 119
                 +  + V G   + E  +   + E+   + A    +            FF + + 
Sbjct: 60  HPFREWEVQIPVTGEAEVVEEEDR-GVKELPQRKVACVQHQGGFRAIEFILPGFFRA-IY 117

Query: 120 DSAYEMLPKPCFEVY--LNNGAEDGYWDIEMYVAVQPKHH 157
           +  Y +   P  EVY  L  G  D     E+   +  +  
Sbjct: 118 EQGYRL-EGPAEEVYPDLKGGEIDLEMVTEVRFPIASRSE 156


>UniRef50_B1HVH6 Putative uncharacterized protein n=5 Tax=Bacteria
           RepID=B1HVH6_LYSSC
          Length = 251

 Score = 83.8 bits (206), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 46/163 (28%), Gaps = 16/163 (9%)

Query: 2   NYEIKQEEKRTVAGFHLVGPWEQT------VKKGFEQLMMWVDSKNIV---PKEWVAVYY 52
             +I + E   + G                + + ++          +     +    +Y 
Sbjct: 94  EPKIIKREAFQIIGISTKTSNANELTAQAKIPQLWQDFYEKNIVDQLSKLDNQNVYGLYS 153

Query: 53  DNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAV-ARVVGDDFA-KPW 110
           D   +           V           S   ++  I   +Y V    +    +   + W
Sbjct: 154 DYETDV-NGNYAITIGVEASKMND---ASPEWVIKTIPAAKYLVFTSHKGKMPEIVIQTW 209

Query: 111 YQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            + +     +S  E      FE+Y    A      +E+Y+A++
Sbjct: 210 QEIWA-WFANSKVERTYTGDFELYDERCANPQEAQVEVYIAIK 251


>UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2
          Length = 290

 Score = 83.8 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 22/167 (13%)

Query: 1   MN-YEIKQEEKRTVAGFHLVGP-----WEQTVKKGFEQLMMWVD----SKNIVPKEWVAV 50
           MN   I Q     + G+          +   +   +             K I P     +
Sbjct: 131 MNKPVITQLGNFYIIGYEYQTNLQNEEYFTDIPLFYMDFGKKEYYQQIQKKIAPHMAYGI 190

Query: 51  YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPW 110
                               V  +    E +EG +   I  G+YA        +      
Sbjct: 191 ST---SFQDDGHFSFVVGEEVEDFDL--ELNEGFVKIVIPEGKYAEFKVSGSHEMVQNTR 245

Query: 111 YQFFNSLLQDSAYEMLPKPCFEV----YLNNGAEDGYWDIEMYVAVQ 153
              + S L +S YE    P FE+    + N   +     +++Y+ ++
Sbjct: 246 RYIYGSWLPNSNYERTSGPDFEITDVLHSNGPND---IKMKIYIPIK 289


>UniRef50_A6LX85 Transcription activator, effector binding n=2 Tax=Bacteria
           RepID=A6LX85_CLOB8
          Length = 297

 Score = 83.4 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 22/171 (12%)

Query: 1   MNYEIKQEEKRT-VAGFHLVGPW------EQTVKKGFEQ------LMMWVDSKNIVPKEW 47
           MNY I++  K+  +A                 +   + +      +    + +    K+ 
Sbjct: 128 MNYRIEETGKQRFIAKVRAFSNEIMNEAGNHDIPDFWGECHKEHLVEEIRNMRPDGKKDL 187

Query: 48  VAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSE----GVILTEITGGQYAVAVARVVG 103
             +   +P +           V +     +         G  + E+    Y V       
Sbjct: 188 YGLC--SPTKKNETTFDYGIGVLIDEDTHIDNEEAMLKKGYRIWEVDSATYVVFKCYGNN 245

Query: 104 DD-FAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQ 153
            D  ++ W +FF   L  S YE      +E+YLN G  +     E+++ V+
Sbjct: 246 GDCISEMWSRFFKEFLPQSDYEQTEDTDYEIYLNEG--EPGLFCELWIPVK 294


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.309    0.151    0.451 

Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,084,205,034
Number of Sequences: 3077464
Number of extensions: 45441067
Number of successful extensions: 105378
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 501
Number of HSP's successfully gapped in prelim test: 627
Number of HSP's that attempted gapping in prelim test: 103149
Number of HSP's gapped (non-prelim): 1299
length of query: 157
length of database: 1,040,396,356
effective HSP length: 118
effective length of query: 39
effective length of database: 677,255,604
effective search space: 26412968556
effective search space used: 26412968556
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 87 (37.9 bits)
