Phyre 2 alignment of P33012 with c2k6xA_

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Job Description | P33012
Confidence | 1.28% | Date | Thu Jan 5 11:50:47 GMT 2012
Rank | 97 | Aligned Residues | 25
% Identity | 12% | Template | c2k6xA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:rna polymerase sigma factor rpod; | PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Query Sequence |  | G | P | W | E | Q | T | V | K | K | G | F | E | Q | L | M | M | W | V | D | S | K | N | I | V | P
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Template Sequence |  | G | S | H | M | P | Q | I | E | R | R | I | K | K | L | I | S | L | G | K | K | K | G | Y | I | T
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  | B
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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