BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (327 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77269 ABC transporter periplasmic-binding protein yphF... 665 0.0 UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding... 342 9e-93 UniRef50_A0QZE7 ABC transporter periplasmic-binding protein YphF... 299 8e-80 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 101 4e-20 UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostri... 97 1e-18 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 96 2e-18 UniRef50_B9K5F9 ABC transporter nucleotide binding/ATPase protei... 93 2e-17 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 92 3e-17 UniRef50_C0C5Z0 Putative uncharacterized protein n=1 Tax=Clostri... 91 4e-17 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 84 5e-15 UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostri... 84 5e-15 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 83 1e-14 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 82 3e-14 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 80 1e-13 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 79 2e-13 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 79 2e-13 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 79 2e-13 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 79 3e-13 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 78 5e-13 UniRef50_C0CGP4 Putative uncharacterized protein n=1 Tax=Blautia... 78 6e-13 UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostri... 76 2e-12 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 75 2e-12 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 75 5e-12 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 74 6e-12 UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostri... 74 1e-11 UniRef50_C9A2C8 Periplasmic ribose-binding protein n=1 Tax=Enter... 74 1e-11 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 73 2e-11 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 72 3e-11 UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional... 71 7e-11 UniRef50_Q0SII4 ABC ribose transporter, substrate-binding compon... 70 8e-11 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 70 8e-11 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 70 1e-10 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 70 1e-10 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 69 2e-10 UniRef50_C3JFS7 ABC transporter, nucleotide binding/ATPase prote... 69 2e-10 UniRef50_B9TLD6 D-allose-binding periplasmic protein, putative (... 69 3e-10 UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coproco... 69 3e-10 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 69 3e-10 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 68 3e-10 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 68 4e-10 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 68 4e-10 UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostri... 68 4e-10 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 68 4e-10 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 68 5e-10 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 68 5e-10 UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerot... 67 6e-10 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 67 9e-10 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 66 2e-09 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 66 2e-09 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 66 2e-09 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 66 2e-09 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 65 2e-09 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 65 2e-09 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 65 2e-09 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 65 3e-09 UniRef50_C0BXQ7 Putative uncharacterized protein n=1 Tax=Clostri... 65 4e-09 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 65 5e-09 UniRef50_C2L0C0 Ribose ABC superfamily ATP binding cassette tran... 64 5e-09 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 64 5e-09 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 64 6e-09 UniRef50_C0C5Y6 Putative uncharacterized protein n=1 Tax=Clostri... 64 6e-09 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 64 6e-09 UniRef50_B1G9I5 Monosaccharide-transporting ATPase n=2 Tax=Burkh... 64 8e-09 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 64 1e-08 UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional... 64 1e-08 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 64 1e-08 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 63 1e-08 UniRef50_Q5ZZ27 ABC sugar transporter, periplasmic sugar binding... 63 1e-08 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 63 2e-08 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 63 2e-08 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 62 2e-08 UniRef50_B5K960 ABC transporter, periplasmic sugar binding prote... 62 2e-08 UniRef50_C6BAM6 Sugar ABC transporter, substrate-binding protein... 62 2e-08 UniRef50_A4ILL0 Methylthioribose-binding protein n=29 Tax=Bacill... 62 2e-08 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 62 3e-08 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 62 3e-08 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 62 3e-08 UniRef50_B0C3I1 Periplasmic binding protein/LacI transcriptional... 62 3e-08 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 62 3e-08 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 62 3e-08 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 62 3e-08 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 61 5e-08 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 61 5e-08 UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra... 61 6e-08 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 61 6e-08 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 61 7e-08 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 60 9e-08 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 60 9e-08 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 60 9e-08 UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostri... 60 9e-08 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 60 1e-07 UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional... 60 1e-07 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 60 1e-07 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 60 1e-07 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 60 1e-07 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 60 2e-07 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 59 2e-07 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 59 2e-07 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 59 2e-07 UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacteriu... 59 2e-07 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 59 2e-07 UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional... 59 3e-07 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 59 3e-07 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 59 3e-07 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 58 4e-07 UniRef50_C2BT70 Ribose ABC superfamily ATP binding cassette tran... 58 4e-07 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 58 4e-07 UniRef50_B0MFL8 Putative uncharacterized protein n=1 Tax=Anaeros... 58 4e-07 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 58 5e-07 UniRef50_C5ESA7 Predicted protein n=2 Tax=Clostridiales bacteriu... 58 5e-07 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 58 5e-07 UniRef50_C9Z0E6 Putative bifunctional carbohydrate binding and t... 58 5e-07 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 58 6e-07 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 58 6e-07 UniRef50_A8F7U7 Periplasmic binding protein/LacI transcriptional... 58 6e-07 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 58 6e-07 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 57 7e-07 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 57 8e-07 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 57 8e-07 UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional... 57 9e-07 UniRef50_B0NGB0 Putative uncharacterized protein n=1 Tax=Clostri... 57 9e-07 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 57 1e-06 UniRef50_A6M392 ABC-type sugar transport system periplasmic comp... 57 1e-06 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 57 1e-06 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 57 1e-06 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 57 1e-06 UniRef50_C0RMD7 Rhizopine-binding protein n=23 Tax=Brucella RepI... 57 1e-06 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 57 1e-06 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 56 1e-06 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 56 2e-06 UniRef50_A9KMR5 Putative solute-binding component of ABC transpo... 56 2e-06 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 56 2e-06 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 56 2e-06 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 56 2e-06 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 55 2e-06 UniRef50_A8W015 Rcorf44 n=7 Tax=Alphaproteobacteria RepID=A8W015... 55 2e-06 UniRef50_A3DI69 ABC-type sugar transport system periplasmic comp... 55 2e-06 UniRef50_C0CLG3 Putative uncharacterized protein n=1 Tax=Blautia... 55 2e-06 UniRef50_A8S1T0 Putative uncharacterized protein n=1 Tax=Clostri... 55 3e-06 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 55 3e-06 UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1... 55 4e-06 UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter... 55 4e-06 UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri... 55 4e-06 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 55 4e-06 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 55 5e-06 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 55 5e-06 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 54 6e-06 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 54 6e-06 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 54 6e-06 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 54 7e-06 UniRef50_A4TH97 Periplasmic binding protein n=41 Tax=Bacteria Re... 54 8e-06 UniRef50_A1WJR0 Rhamnose ABC transporter, periplasmic rhamnose-b... 54 9e-06 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 54 9e-06 UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional... 54 9e-06 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 54 1e-05 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 54 1e-05 UniRef50_Q8KIM1 Sugar ABC transporter, substrate-binding protein... 53 1e-05 UniRef50_Q029E0 Transcriptional regulator, LacI family n=1 Tax=C... 53 1e-05 UniRef50_A6ULC6 Putative ABC transporter, periplasmic solute-bin... 53 1e-05 UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroi... 53 1e-05 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 53 1e-05 UniRef50_C9R4N9 Autoinducer-2 (AI-2) kinase n=3 Tax=Gammaproteob... 53 1e-05 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 53 1e-05 UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=... 53 2e-05 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 53 2e-05 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 53 2e-05 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 53 2e-05 UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding... 53 2e-05 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 53 2e-05 UniRef50_B9KBM0 Sugar binding protein of ABC transporter n=2 Tax... 52 2e-05 UniRef50_Q7WIY8 Putative sugar ABC transport system, substrate-b... 52 2e-05 UniRef50_C0C307 Putative uncharacterized protein n=2 Tax=Clostri... 52 2e-05 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 52 2e-05 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 52 3e-05 UniRef50_Q1WVL1 D-ribose-binding protein n=2 Tax=Lactobacillus s... 52 3e-05 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 52 3e-05 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 52 3e-05 UniRef50_A9KQP5 Periplasmic binding protein/LacI transcriptional... 52 3e-05 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 52 3e-05 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 52 3e-05 UniRef50_B1YXY0 ABC-type sugar transport system periplasmic comp... 52 4e-05 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 52 4e-05 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 51 4e-05 UniRef50_A6TS00 Periplasmic sugar-binding protein n=1 Tax=Alkali... 51 5e-05 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 51 5e-05 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 51 5e-05 UniRef50_A5FVU5 Periplasmic binding protein/LacI transcriptional... 51 5e-05 UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribos... 51 6e-05 UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=... 51 6e-05 UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobact... 51 6e-05 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 51 6e-05 UniRef50_Q67RD5 Ribose ABC transporter ATP-binding protein n=7 T... 51 7e-05 UniRef50_C0CRA5 Putative uncharacterized protein n=1 Tax=Blautia... 50 8e-05 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 50 8e-05 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 50 8e-05 UniRef50_A7ZI69 Sugar ABC transporter, periplasmic sugar-binding... 50 9e-05 UniRef50_C0A5X1 LacI-family transcriptional regulator, ribose op... 50 1e-04 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 50 1e-04 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 50 1e-04 UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional... 50 1e-04 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 50 1e-04 UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein p... 50 1e-04 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 50 1e-04 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 50 1e-04 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 50 1e-04 UniRef50_UPI0001973330 periplasmic binding protein/LacI transcri... 50 1e-04 UniRef50_B8I3W5 Periplasmic sugar-binding protein n=2 Tax=Clostr... 50 1e-04 UniRef50_C2L0C1 Putative uncharacterized protein n=1 Tax=Oribact... 50 2e-04 UniRef50_C0BEZ3 Putative uncharacterized protein n=1 Tax=Coproco... 49 2e-04 UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional... 49 2e-04 UniRef50_B9KPX1 Periplasmic binding protein/LacI transcriptional... 49 2e-04 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 49 2e-04 UniRef50_B6FKZ7 Putative uncharacterized protein n=1 Tax=Clostri... 49 2e-04 UniRef50_C1Q8L3 Monosaccharide ABC transporter substrate-binding... 49 2e-04 UniRef50_A4LGF7 ABC transporter, substrate-binding protein n=11 ... 49 3e-04 UniRef50_B0P6G5 Putative uncharacterized protein n=1 Tax=Anaerot... 49 3e-04 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 49 3e-04 UniRef50_A5CP31 Putative sugar ABC transporter, solute-binding p... 49 3e-04 UniRef50_UPI0001C31C00 xylose binding protein transport system n... 49 3e-04 UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=... 49 3e-04 UniRef50_C7GDR0 Transcriptional regulator, LacI family n=1 Tax=R... 49 3e-04 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 49 3e-04 UniRef50_C0C0Q7 Putative uncharacterized protein n=1 Tax=Clostri... 49 3e-04 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 49 3e-04 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 48 4e-04 UniRef50_C1XTQ0 Monosaccharide ABC transporter substrate-binding... 48 4e-04 UniRef50_B1VWK1 Putative ABC transporter solute-binding protein ... 48 4e-04 UniRef50_A9D050 RbsB protein n=2 Tax=Alphaproteobacteria RepID=A... 48 4e-04 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 48 5e-04 UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 T... 48 5e-04 UniRef50_D1BWE1 Periplasmic binding protein/LacI transcriptional... 48 5e-04 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 48 5e-04 UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional... 48 6e-04 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 47 6e-04 UniRef50_A8RJH2 Putative uncharacterized protein n=1 Tax=Clostri... 47 7e-04 UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional... 47 7e-04 UniRef50_B1ZU45 Periplasmic binding protein/LacI transcriptional... 47 8e-04 UniRef50_Q0SK74 ABC sugar transporter, periplasmic solute-bindin... 47 8e-04 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 47 8e-04 UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=B... 47 8e-04 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 47 8e-04 UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Ta... 47 8e-04 UniRef50_Q5IH17 PydC n=1 Tax=Rhizobium sp. TAL1145 RepID=Q5IH17_... 47 9e-04 UniRef50_C0CMP2 Putative uncharacterized protein n=1 Tax=Blautia... 47 9e-04 UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verruco... 47 0.001 UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=... 47 0.001 UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostri... 47 0.001 UniRef50_B8E1T5 Rhamnose ABC transporter, periplasmic rhamnose-b... 47 0.001 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 47 0.001 UniRef50_A9HG18 Ribose ABC transporter, substrate-binding protei... 47 0.001 >UniRef50_P77269 ABC transporter periplasmic-binding protein yphF n=58 Tax=Bacteria RepID=YPHF_ECOLI Length = 327 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/327 (100%), Positives = 327/327 (100%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV Sbjct: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT Sbjct: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK Sbjct: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR Sbjct: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK Sbjct: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 Query: 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327 VIQVPIDLYTKTEDGKQWLATHVDGLP Sbjct: 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327 >UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=3 Tax=Bacteria RepID=C1YRI6_NOCDA Length = 332 Score = 342 bits (877), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 158/295 (53%), Positives = 221/295 (74%) Query: 33 IGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92 IG +Y+D QG+YAGVR+G+Q+ A DS ++QL+E NA+GD S+ESTFVD + + +VDA++ Sbjct: 38 IGVVYMDAQGFYAGVREGMQNYADDSGRELQLLELNARGDASEESTFVDVVSSADVDALV 97 Query: 93 LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152 LS VS S VR A E+GIPVICYNTCI + +YV++Y++GDP EFG+ LG+AAAD Sbjct: 98 LSPVSATASVPAVRLAHESGIPVICYNTCIEDEAAKEYVTSYILGDPHEFGRLLGDAAAD 157 Query: 153 YFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGE 212 +F ++ P+I V+NCE EVCVQRR+GFEE L +R+P A+IVANQEG +D+A++VGE Sbjct: 158 HFEDEGVEDPQIGVLNCEFVEVCVQRREGFEEALFARLPDARIVANQEGATIDEAVNVGE 217 Query: 213 KLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 +L+ + PDL+A GE+GGAT+GAV+AV N+ AG++ VFGSDM+T+ A+ L ++++LKA Sbjct: 218 RLLTAHPDLDAFYGEAGGATMGAVRAVTNRGLAGEVVVFGSDMSTDAARALSDHRILKAN 277 Query: 273 VDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP 327 VDISG +G ++I +A E V + PIDLYT EDG++WL H DG+P Sbjct: 278 VDISGIAVGLLAGETVERIIAGEAPEEFVTEAPIDLYTTPEDGEEWLEEHPDGVP 332 >UniRef50_A0QZE7 ABC transporter periplasmic-binding protein YphF n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZE7_MYCS2 Length = 329 Score = 299 bits (766), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 146/331 (44%), Positives = 211/331 (63%), Gaps = 6/331 (1%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEM----TIGAIYLDTQGYYAGVRQGVQDAAK 56 MP +R R + ATL+ A A + + I +YL+ +G+YAGV+ GV+ A Sbjct: 1 MPRSLR--RRAVRFATLMLVAALAVSGCSRIGENGRIAVVYLNAEGFYAGVKVGVKKAFA 58 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 D+ QLIETNA+ D S+ES F+DT+ + VDA+ILS S + S VR A ++GIPVI Sbjct: 59 DAGDAPQLIETNARSDPSQESAFIDTVSSVQVDALILSPTSADASVPAVRLAHDSGIPVI 118 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV 176 CYNTC+ + KYV ++++G P EFG+ G +YFI N I PK+AVINCE FEVC+ Sbjct: 119 CYNTCVTESDARKYVDSWILGSPQEFGRIGGEQMGNYFIENGITHPKVAVINCEQFEVCI 178 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 QRR+GFE+ L S VP A+IVANQ+G ++D+A+ E+++ + PDL+A GE+G T+GAV Sbjct: 179 QRRQGFEQALTSLVPAAEIVANQQGLLVDEAVEASERILTAHPDLDAFYGEAGSMTVGAV 238 Query: 237 KAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 +AV+ + G++ VFG DM+T+IAQ L+ VL+ V DISG +G L+++ Q Sbjct: 239 RAVQARRLTGRVVVFGGDMSTQIAQMLQEGSVLRGVADISGITVGEMAADAALRLLRGQR 298 Query: 297 DGEKVIQVPIDLYTKTEDGKQWLATHVDGLP 327 ++ P+D Y + G +WL H DG+P Sbjct: 299 SENLIVDAPVDAYEGPDAGTRWLREHPDGIP 329 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 148/316 (46%), Gaps = 32/316 (10%) Query: 9 RNLLLMATLLGSALFARAAEKE-MTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIE 66 R L + T+L S F AA T + ++ Q ++ + +G QDAAK S L+ Sbjct: 10 RLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKD--LVI 67 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN--- 123 N+ + ++ ++ + + V I+++A+ NG V+ A+ A IPVI + + Sbjct: 68 FNSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP 127 Query: 124 ---QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 Q GVD +E G+ +G DY Q ++ ++ + QR+K Sbjct: 128 QAAQVGVDN----------IEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQRQK 177 Query: 181 GFEEVLKS--RVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 GFEE LKS ++ A +V Q V DKA++ E LI PDL AI A LGA+ A Sbjct: 178 GFEETLKSNPKITIANVVDGQN--VQDKAMTAAENLITGNPDLTAIYATGEPALLGAIAA 235 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 V NQ + I VFG D+T + ++ V AV+ +KMG A+ L +N G Sbjct: 236 VENQGRQKDIKVFGWDLTAKAISGMDGGYV-TAVLQQDPEKMG----AEALNALNSITSG 290 Query: 299 E---KVIQVPIDLYTK 311 + K I VP + TK Sbjct: 291 KTVPKTILVPATVVTK 306 >UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPB7_9CLOT Length = 363 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 17/249 (6%) Query: 32 TIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAI 91 +I I ++ + G + AAKD ++QL +N D KE+ V+T A+ V I Sbjct: 66 SIAGIVFQEDQFFKLMSAGYEAAAKDLGYEIQL--SNVTNDQMKETELVNTYTAQGVAGI 123 Query: 92 ILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY---VSAYLVGDPLEFGKKLGN 148 +S +S S ++ +S+ G+ + C+ +D Y ++AY D F K+ G Sbjct: 124 AISPLSATISPEALKVSSDKGVKI-----CVANTAMDSYPFSIAAY-TSDNYAFCKQTGE 177 Query: 149 AAADYFIANKIDQPKIAV----INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL 204 A D FI K KI + + E +R GF L +IV+NQ+ + Sbjct: 178 IAVD-FIKEKYGDEKIELGILQFKTQIPETSAERVNGFLAALDEGGVNYEIVSNQDAWLQ 236 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 D AI+ ++ + PD++ + + G T+GAV AV N QAGK VFG+D + +I L+ Sbjct: 237 DTAIAKAGDMLAANPDIDIMFAANDGGTIGAVMAVENAGQAGKTFVFGTDASEQIVDLLK 296 Query: 265 -NNQVLKAV 272 +N +L+AV Sbjct: 297 ADNDILQAV 305 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 147/290 (50%), Gaps = 17/290 (5%) Query: 30 EMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 ++TIGA L Q +Y ++Q ++ AA D+ V+ LI + A D++K+ + V+ + R V Sbjct: 28 DITIGASLLTQQHPFYVQLKQAMEKAADDNGVE--LIVSIANQDLNKQISDVEDFIVRGV 85 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 DAI+LS V G + +A AGIPVI + I+ +GV+ V A++ D G+ G Sbjct: 86 DAIVLSPVDSKGVVGAIIKAKRAGIPVITVD--ISAEGVE--VDAHVATDNYYGGRIAGE 141 Query: 149 AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAI 208 A + ++A+I+ + R GF+E + S+ PG +IVA Q G +A+ Sbjct: 142 TMAKVLNG----KGQVAIIDYPVVQSVRDRVAGFKEAV-SKYPGIEIVAIQPGITRPEAL 196 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 + + ++ + P+++ I G A L +V AV++ + V G D E ++ + Sbjct: 197 NTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAVKKEES 256 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINKQADGEKV-IQVPIDLYTKTEDGKQ 317 AVV +MG L+VI GEKV ++P+ T++G+Q Sbjct: 257 FVAVVCQYPGEMGRLGLETALRVIK----GEKVEKEIPVLPGLFTKEGEQ 302 >UniRef50_B9K5F9 ABC transporter nucleotide binding/ATPase protein n=12 Tax=Proteobacteria RepID=B9K5F9_AGRVS Length = 319 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 10/250 (4%) Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L+ NA D + +++ ++T + + VD I + A+ NG V++A++AGIPV+ ++ + Sbjct: 67 LVIFNANNDPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAADAGIPVVAIDSIL- 125 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 G K A + D + G +G DY + + K+ V+ + R+KGFE Sbjct: 126 PAGPQK---AQIGVDNAKAGADIGKFFVDYVKKDMGGKAKLGVVGALNSFIQNIRQKGFE 182 Query: 184 EVLK--SRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + +K S + A +V Q V D A++ E LI PD+ AI A LGAV AV++ Sbjct: 183 DTIKGVSGITSAGVVDGQN--VQDNALAAAENLITGNPDMTAIYATGEPALLGAVAAVQS 240 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 Q++ I VFG D+T + ++ V AV+ MG A + LK I+ EK Sbjct: 241 QSKQDSIKVFGWDLTAQAIAGIDAGYV-AAVIQQDPAAMGEAAV-KALKTISDGGKVEKT 298 Query: 302 IQVPIDLYTK 311 I VP+ + TK Sbjct: 299 IAVPVTIVTK 308 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 133/270 (49%), Gaps = 15/270 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 +Y + +G+Q+ A V+ LI + GD++ ++ V+ + + VD I+L + N + Sbjct: 73 FYVDLEKGMQEVADAQGVK--LITQDPNGDLAAQTKQVEDFITQGVDGIVLCPIDSNAAV 130 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI-DQ 161 ++AGIP++ + + G D V++++ D LG A FI ++ Sbjct: 131 TEAETINQAGIPLVTTDIAV--AGGD--VASHIASD-----NTLGGQLAAQFIGEQLGGT 181 Query: 162 PKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPD 220 K+A+IN ++R GF + + + P +IVA Q G + +K +SV E ++ S PD Sbjct: 182 GKVALINNPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQSNPD 241 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + + + LGA++AV+ Q I + G D T E + ++ LKA V + ++ Sbjct: 242 VQGVFAVNDMMGLGALQAVQ-AAQRDDIVIVGFDATEEAVKYIKEGSALKASVAQNPVEL 300 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 G LKVI + EK I VP++L T Sbjct: 301 GKTTMETMLKVIAGE-QVEKNIPVPVELVT 329 >UniRef50_C0C5Z0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Z0_9CLOT Length = 322 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 18/296 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA-----AEKE-----MTIGAIYLDTQGYYAGVRQG 50 MP K+ ++ ++ L + FA + A KE M IG D + + Sbjct: 1 MPGKITRVCFVICLSCFLAACSFAGSLGEDTAHKEKTAKGMKIGVCMSDMT-HTTFIEML 59 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 Q K + V++IE ++ D ++ +A DAII ++ S V A + Sbjct: 60 DQMHRKADKLGVEIIEFSSDSDPGNMVEGLENFIAAGCDAIIFQNFDQDASEYVVSEAVK 119 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE 170 GI VI Y+ N YV V D + G +G+ A D+ N + +A+ + Sbjct: 120 KGIIVISYD---NYSDAATYV---YVADNEKLGFAIGHMAGDWINENLGGRANVAICDYS 173 Query: 171 AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGG 230 R EE ++ R P ++IVA Q+ +LD+ ++ GE L+ + PD+N + G + Sbjct: 174 LINFLNNRADYIEEGIRERAPESKIVARQDAGLLDQGVNFGEILLQAHPDVNVVAGVNDN 233 Query: 231 ATLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVF 285 LG +A + ++ G IA+FG D T E + + + V + V K+ G +F Sbjct: 234 GVLGVKEAFESAHKTGPSIAMFGCDATEEGIKAIREDSVFRGTVYFDLKQAGEDMF 289 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 94/335 (28%), Positives = 163/335 (48%), Gaps = 47/335 (14%) Query: 5 MRTTRNLL--LMATLL-GSALFARAAEKEMTIGAIYLD-------------TQGYYAGVR 48 M+ T+ +L L++TLL GSA+ KE ++ D + ++ G+ Sbjct: 1 MKKTKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGME 60 Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 +GV+D K S + +LIETNA GDI+K+ + ++ L+ + VD +I++A+ + V++A Sbjct: 61 KGVKD--KTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKA 118 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA--V 166 EA IP+I + N + + ++ V K+G AA+ + D+ V Sbjct: 119 KEANIPIIFLDRGANSEDMTTFLETDNV--------KMGEQAAELILKALKDKGLNGGNV 170 Query: 167 INCEAFE---VCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLN 222 + E + R KGF V+ + +IVA Q G +K+++V + ++ + P ++ Sbjct: 171 VEIEGLQGTSAARDRGKGFHNVM-DKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPKID 229 Query: 223 AIMGESGGATLGAVKAVRNQNQ---AG---KIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 A+ G + T+GA KA+ N+ AG I V G D I Q +E+ V K +D+S Sbjct: 230 AVFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGID---GINQAIES--VKKGNIDVS 284 Query: 277 GKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 + + Q ++V K GE QV +YTK Sbjct: 285 ISQDPIGMGVQAVEVGLKAIKGE---QVEKHIYTK 316 >UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4T0_9CLOT Length = 334 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 12/266 (4%) Query: 33 IGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAI 91 +G I D T Y+ V +GV+D ++VQ+I + D + V+ L+ + VD I Sbjct: 52 VGFIVQDLTINYFLSVVKGVEDFQDKYDMEVQVI--DGHSDAPTQVDAVENLITQEVDCI 109 Query: 92 ILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAA 151 ++ V V+ A AGIPVI ++ I +G D +++ + ++G + G A Sbjct: 110 VICPVDTVAPEAAVKEAQAAGIPVITWSEKI--EGADAWIAV----NNYDYGFENGKIAG 163 Query: 152 DYFIAN--KIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAIS 209 + + N K + K+ + + E ++R +G + L S P A+ VA Q G + + Sbjct: 164 QWILDNLDKQEDAKVMYVYVKENEQLIERGEGMMDGLASLAPDAETVAVQSGNTTESGME 223 Query: 210 VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-GKIAVFGSDMTTEIAQELENNQV 268 E + PDLN I+ + LGA +A+ + ++ K+ + G D + + + + + Sbjct: 224 AVETTLAKHPDLNVIVCSNDSVALGAYEAMVSAGKSDAKVCITGQDADEKNLEYISQDTI 283 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINK 294 LK VDI G + KV+ + Sbjct: 284 LKGTVDIGAYNQGELLCQSVEKVLKE 309 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 146/305 (47%), Gaps = 18/305 (5%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 L L A G A +K IG + D + +++ + +G ++AA +S+ +A Sbjct: 20 LSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAA--ASIGATANTQDA 77 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 Q D++ ++T +DT + + V+ I++SAV ENG + RA +AGI VI +T K Sbjct: 78 QLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVDTPA------K 131 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSR 189 A ++ D ++ G+K + Y + + +++ + R G V+K + Sbjct: 132 SADAVVMTDAVQAGEK----SCQYLFEQMGGKGNVLLVDGTPLQTIRDRITGCNNVVK-K 186 Query: 190 VPGAQIVANQEGTVLDKA--ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 PG ++V Q+ + D+A ++V ++ +TPD+ I G + + LGAV AV+ ++AG Sbjct: 187 FPGIKVVG-QQASKNDRASGLAVTTDMLTATPDVQGIFGMNDPSALGAVLAVQQAHKAGT 245 Query: 248 IAVFGSDMTTEIAQEL-ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 + V G D + E EL ++ + +M +I+ + E I +P Sbjct: 246 VKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNIIDNKPPAETTILIPS 305 Query: 307 DLYTK 311 +L T+ Sbjct: 306 ELVTR 310 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 141/288 (48%), Gaps = 18/288 (6%) Query: 28 EKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 +K++TIG + Q ++ + +G+++ AK+ V+V I + D++K+++ ++ + + Sbjct: 39 KKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKV--IVNDPDQDVAKQTSAIEDFIQQ 96 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 NVD +I+ + V A E +PV+ + +N + + YV + GKKL Sbjct: 97 NVDGMIVLGTDNSAIVPAVEGAFEK-MPVVTVDAVLNTENITSYVGTV----SYDAGKKL 151 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK 206 G Y + +IA++ ++ +QR GF++ LK +I+ +Q G ++ Sbjct: 152 GEYTKKYIDEKLGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSA-NVKILNSQPGYDREE 210 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 +++ E LI S PD++ I + + LGA KA + + + G D+T E + + + Sbjct: 211 SLNTVENLIQSNPDVDIIYATAENSVLGA-KAALESAKNKDVKIVGFDLTEEASSGITDG 269 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV---IQVPIDLYTK 311 +L A++ K+MG +K I GEKV I VP LY K Sbjct: 270 TIL-AMIQQQPKEMGRLAVEAVVKAIK----GEKVEKNIPVPALLYDK 312 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 21/254 (8%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 ++Q D +KES D ++A DAII + +GS V+RA EAGIPV C + IN +G+ Sbjct: 70 DSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGL 129 Query: 128 -------DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 D Y L+G+ F K L D A +I P ++ + + R Sbjct: 130 AVAQIYSDNYYGGVLMGE--YFVKFLKEKYPD---AKEI--PYAELLGILSAQPTWDRSN 182 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF V+ + P ++VA Q D A V E+++ + P++ AI + LGA+KA Sbjct: 183 GFHSVV-DQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKAC 241 Query: 240 RNQNQAGK--IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 AG+ I +FG D ++ ++ + + A + K M + + + Sbjct: 242 E---AAGRTDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGERS 298 Query: 298 GEKVIQVPIDLYTK 311 +++ V ++L T+ Sbjct: 299 FPEIVPVTVELVTR 312 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 126/254 (49%), Gaps = 11/254 (4%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V+L+ NAQ SK+ + V L+A+ D ++++ ++ +G +R AS IP++ + Sbjct: 112 VKLLAVNAQSQFSKQISDVQDLIAKGADLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRK 171 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAV-INCEAFEVCVQRRK 180 IN YVS ++ D +E G++ AAD I + ++A+ + V +R K Sbjct: 172 INAGPCKDYVS-FIGSDFVEQGRR----AADKMIEATGGKGEVAILLGAAGNNVTTERTK 226 Query: 181 GFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF++ + + PG ++V Q G +K SV E+LI S P + I E+ LGAV A+ Sbjct: 227 GFKDRVAEKAPGLKVVFEQTGDFAREKGQSVTEQLIQSKPGIKGIYAENDEMGLGAVNAL 286 Query: 240 RNQ-NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 ++ + G + + D T +++ + + V++ S + G F QTL K + Sbjct: 287 KSAGKKPGAVKIVTVDGTRNAVKQIVDGWI-SGVIE-SNPRFGPLAF-QTLDTFTKGEEV 343 Query: 299 EKVIQVPIDLYTKT 312 ++ I + Y KT Sbjct: 344 QQDIVIKDSAYDKT 357 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 139/285 (48%), Gaps = 13/285 (4%) Query: 28 EKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 EK TIG L Q +Y ++ ++ A +V++ + + A D++K+ + ++ + + Sbjct: 36 EKTYTIGVSLLTQQHPFYLSLKDAIEKEAAAQNVKLNV--SIANQDLNKQISDIEDFITK 93 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 VDAII+S V G V++A A IPVI + + GVD V+A++ D GK Sbjct: 94 KVDAIIISPVDSKGVLAAVKKAEAANIPVITVD--VPAIGVD--VAAHVATDNYTGGKIA 149 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK 206 G A + ++AVI + VQR +GF+EV+ ++ P +IVA Q G + Sbjct: 150 GEEMARLLNG----KGEVAVIEYPTVDSVVQRIEGFKEVI-AKYPDIKIVAIQAGITRPE 204 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 A++ + +I + +L I G A L AV AV++ + +I V G D E + Sbjct: 205 ALTAAQNMIQANKNLGGIFGFGDDAALAAVAAVKSAGKEDQIKVIGFDGMQEARDAVTKE 264 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 + AV+ + MG TLK++ K EK I V ++TK Sbjct: 265 KSFAAVITQYPEDMGKIAVDTTLKIL-KGEQVEKNIPVTPGIFTK 308 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 129/253 (50%), Gaps = 14/253 (5%) Query: 26 AAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKD-SSVQVQLIETNAQGDISKESTFVDTL 83 ++EK+ I I +D+ ++ V+ G + AK+ +VQ+ + D +++ ++ Sbjct: 44 SSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMEDA 103 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + + DAI+++ + + V +A +AGIPVI ++ + DKYVS ++ D + Sbjct: 104 INQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVK---TDKYVS-FVATDNI--- 156 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 K AAD + KIA+I+ + + R GF++ LK + P QI+ Q + Sbjct: 157 -KAAEMAADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQY-S 214 Query: 203 VLDKAISVGEKLIIST--PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 + DK ++ + L I T PDL G + G+T+G A++ ++ AGK+ V G D++ Sbjct: 215 MGDKNRALNQALDILTAHPDLAGFYGTNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATI 274 Query: 261 QELENNQVLKAVV 273 ++ N + ++V Sbjct: 275 NAIKENYIQASMV 287 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 27/277 (9%) Query: 32 TIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 TIG L+ T +Y ++ +++ AK+ + + +A GD +K+ V + + VDA Sbjct: 60 TIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDV--QDAAGDANKQLGQVQDFITKKVDA 117 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 I+++ + GS + A +AGIPV + + K V ++ D KK G A Sbjct: 118 IVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKPV-----THVATD----NKKGGQLA 168 Query: 151 ADYFIANKIDQPK--IAVINCEAFEVCVQRRKGFEEVLKSRVPGAQI--VANQEGTVLDK 206 A+Y + N + + K +AVI E CV R GF + LK P ++ V N G K Sbjct: 169 AEYVVNNILTEKKGNVAVITYSEIESCVDRETGFTDYLKENAPDIKVVDVQNYSGD-QQK 227 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN- 265 A V + +++ +++ + A +GA+ ++ N A KI G D E E++ Sbjct: 228 AADVMQNMLLKNDNIDVVFCVGDPAAIGALSSITAANAATKI--IGYDGNPEGVAEIKKG 285 Query: 266 -NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 N V D +G + TL+ I K +GEKV Sbjct: 286 GNWVADVAQDPAG------IGKTTLEAIKKHLEGEKV 316 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 147/313 (46%), Gaps = 24/313 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE-KEMTIGAIY-LDTQGYYAGVRQGVQDAAKDS 58 M +++ +L ++ L+ A++ A + K+ TI I L T G+Y + +G ++AAK Sbjct: 1 MSKRVKWVFTVLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRL 60 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 V++ + + + + + ++ ++AR DAI+++ N ++RA EAGI +I Sbjct: 61 GVEL-IFQGGPEFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITV 119 Query: 119 NTCINQ-------KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI-DQPKIAVINCE 170 +T I + KG + AY+ D +E G+ A +A I ++ K+ V N + Sbjct: 120 DTFIGENGQYQTGKGNADFPLAYVASDNVEGGRIAARA-----LAKAIGEKGKVYVSNVK 174 Query: 171 -AFEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGES 228 QR +GF+E +K + PG ++A Q +KA S + PDL + G + Sbjct: 175 PGISTTDQREQGFKEEMK-KYPGITVLATQYNDNDANKAASQLAAALARNPDLAGVFGAN 233 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 + +GA V+N + G + V D I +++ + AV +MG Sbjct: 234 LFSAIGAANGVKNAGKRGAVKVAAFDCPESIINDIKGGTIDMAVCQHPA-EMGRIAVEWA 292 Query: 289 LKVINKQADGEKV 301 +K +N GEK+ Sbjct: 293 VKALN----GEKI 301 >UniRef50_C0CGP4 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CGP4_9FIRM Length = 313 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 17/248 (6%) Query: 72 DISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV 131 D+ + T ++ +A +VDA+I+ ++ N + +++A +AGI V+ ++T N Y Sbjct: 65 DVQEMITGIENYMASDVDALIVHPMNANDGAEAMQKAYDAGIQVLVFDTEPNCD----YS 120 Query: 132 SAYLVGDPLEFGKKLGNAAADYFIANKIDQ---PKIAVINCEAFEVCVQRRKGFEEVLKS 188 + ++ + E G K+G AA++ N + + P I ++N + E +R G L+ Sbjct: 121 NCFMASNE-ELGYKIGEQAANWAKENLVSKGMTPVIGLVNEPSSEFLTERETGIRNALEE 179 Query: 189 RVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG-- 246 +P +IV GT GE + + PD+N ++ + G +A QAG Sbjct: 180 LLPEGEIVITGAGTTALAGQEAGENFLQAYPDMNMVVSINDDTMHGVYEAFA---QAGLT 236 Query: 247 ---KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG-NAVFAQTLKVINKQADGEKVI 302 I +F D T + + + + K VVD+ K+G N V V+ + +D EK+ Sbjct: 237 TSENIGLFSCDGTQKSKEYVAEGGIFKCVVDLELNKVGENMVECAQKDVLGEDSDYEKIN 296 Query: 303 QVPIDLYT 310 P++ T Sbjct: 297 YFPMNPVT 304 >UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD9_9CLOT Length = 369 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 10/273 (3%) Query: 46 GVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTV 105 G ++ ++D D + VQ +N I+++ +++++ + VDAI L+ S+N + Sbjct: 98 GAKKQIEDKGLDIELLVQAPASNTS-TITEQGNIMESMIQQGVDAIALATESDNSMLPYL 156 Query: 106 RRASEAGIPVICYNTCINQKGVDKYVSAYLVG-DPLEFGKKLGNAAADYFIANKIDQPKI 164 R A+EA IPV +N K YVS+ +G D G ++G A+++ ++ K+ Sbjct: 157 RAAAEADIPVFLFNMTELDKDNIYYVSS--IGYDQYNAGLEIGKYVAEHYGDKEV---KL 211 Query: 165 AVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNA 223 A++ A V R GF+ ++ + QIVA+Q +K SV E ++ S PD+N Sbjct: 212 AILEGYAGIVNTMRIDGFKAGIQGK-DNIQIVASQTADWTREKGQSVTESILTSNPDINL 270 Query: 224 IMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNA 283 I G+ LG + +++ + +I G T + +ENN+ + A +D+ G Sbjct: 271 IFGDYDEMVLGGLVSIKERGLLDQIDTIGYGCTKDGVAAIENNE-MTATIDVGEYGTGID 329 Query: 284 VFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + + EKVI P +Y K G+ Sbjct: 330 IIDAVNDFCIEGKSVEKVINRPSKVYDKNNIGE 362 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 140/276 (50%), Gaps = 29/276 (10%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ +R+GV++AA +V+ + T+AQ D S ++ V+ L+ + VD I+++ V + Sbjct: 63 FFVSIREGVEEAAGKENVETVI--TDAQNDSSTQNNQVEDLITQGVDLIVINPVDSTAIA 120 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDK-YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 +V +A+EA IPVIC + +G D+ + +++ + +E GK G +I K+ + Sbjct: 121 TSVEKANEANIPVICVD-----RGSDQGELVSFIASNNVEGGKLAGE-----YILEKVGE 170 Query: 162 PKIAVINCEAF---EVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKA--ISVGEKLII 216 VI E +R +GFEE ++ ++A+Q D+A ++V E L+ Sbjct: 171 -NAEVIQLEGIPGASSTRERGEGFEEATNGKI---NLLASQTAN-FDRAEGMTVMENLLQ 225 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAGK-IAVFGSDMTTEIAQELENNQVLKAVVDI 275 + PD+ A+ ++ LGA +A++ +GK + + G D + + +E L A V Sbjct: 226 AHPDVKAVFCQNDEMALGASEAIK---ASGKDVTIVGFDGNEDAIKAVEEGN-LSATVAQ 281 Query: 276 SGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 K+MG +K + K + E+ + P++L K Sbjct: 282 KPKEMGKLAIETAIKYL-KGEEVEETVDSPLELIKK 316 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 8/238 (3%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A E + IG + GY+ VR+G+ AA +++V++ ++A D SK+ + V+ L Sbjct: 33 AETKEAKKKIGVLIPGPVGYFVAVREGIDKAAAENNVEITY--SDAGWDASKQLSQVEDL 90 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY--VSAYLVGDPLE 141 +++ VD I ++AV N + VR A+EA IP++ + I K +Y + Y+ + +E Sbjct: 91 ISKKVDLIAIAAVDSNAAKTAVRMANEANIPILAFTNAIGDKENGEYEGLITYVGQNEVE 150 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 GK G A + K K+ +I + RRKG E L + + Sbjct: 151 TGKLTGELAKS-LLGEK--GGKVVLIEGRPGTSPQINRRKGVMEALDTNKNFEVVYTQTS 207 Query: 201 GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 ++A+ + E LI ++ I+ + + +GA A++ N KI V G +TE Sbjct: 208 NWEKEQALKIVEDLIQKNQTIDVIIAQDDNSAIGAGMALKEANLKDKILVIGLGGSTE 265 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 11/234 (4%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 QLI + D+SK+ ++ ++ + V+A+ L+ V G + +A IP+I ++T + Sbjct: 72 QLITMDPAMDVSKQIDQINDMITQGVEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEV 131 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 YV+AY+ D K G D + + KIA++NC R GF Sbjct: 132 KDM---NYVTAYVGSD----NKNAGKVCGDDLVKRYPNGGKIAILNCPTMNSINDRIAGF 184 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + ++ + IVA Q+G L ++ + + ++ S D+ AIMG + LGA+ A ++ Sbjct: 185 KSAIEGK--NFTIVAEQDGKGDLQTSMKLADDILQSHSDIVAIMGGNDPTALGALAACKS 242 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 Q+ KI ++G D + + +E+ + S K++G KV+NKQ Sbjct: 243 AKQS-KILIYGVDGSPDAKKEIASGGQFVGTGAQSPKQIGVKSAELGYKVLNKQ 295 >UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RJP3_9CLOT Length = 359 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 121/249 (48%), Gaps = 14/249 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ V G Q + ++ Q++++ + D++ + ++V+ V R+VD I++S + EN Sbjct: 92 YFIQVYDGFQSKCAELGIKTQILDS--KYDVATQVSYVEDAVQRDVDGIMISPLDENALK 149 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 V +A E GI V ++ +D + Y +G +GNAAA++ A + + Sbjct: 150 TVVDQAKEKGIVVSAEAQPVSNAQIDGSLDEYNIG------YAIGNAAAEWIKAEQGGKG 203 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLN 222 + ++ + E ++R G + + P A++VA Q + D + V E ++++ P++N Sbjct: 204 RALILAQDDVEAVIRRGDGINDGILENAPEAEVVARQNASNTDLGMKVTESVLLAKPEVN 263 Query: 223 AIMGESGGATLGAVKAVRN-QNQAGKIAVFGSDMTTEIAQELE-NNQVLKAVVDI----S 276 I +GA +AV Q + G D T E ++++ N V ++ ++ + Sbjct: 264 VICACDDFTAIGAYEAVSAMQKIPDNFYIGGCDATDEGKEKMKVENSVYRSSCNLFPYEA 323 Query: 277 GKKMGNAVF 285 G+ + A++ Sbjct: 324 GEDLAEAMY 332 >UniRef50_C9A2C8 Periplasmic ribose-binding protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C8_ENTGA Length = 352 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 79/310 (25%), Positives = 151/310 (48%), Gaps = 21/310 (6%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 ++L+A+ + A +++ + T+ I + DT Y+ +++G +DAAK+ + + +T+ Sbjct: 16 MVLLASGCSNGSSAASSDNDKTLYFIPIVDTGAYWNPMKKGAEDAAKELGYTL-VTKTSP 74 Query: 70 QGDISKEST---FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 + SK+ F+ A+NV I ++ + + ++ A + IPVI ++ + Sbjct: 75 SAEPSKKEKHIGFIKEATAKNVAGIAIAPIEKKAFVDPIKAAMDKDIPVITFDADLENPD 134 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRK----G 181 D+ +AY+ D + GK+LG AA+ I IA++ + A + R K G Sbjct: 135 -DR--TAYVGTDNVSAGKELGKRAAEEMKEKGITGGSIAIVCVDVAQPTMIDREKGLKEG 191 Query: 182 FEEVLKSRVPGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAIMG-ESGGATLGAVKAV 239 FEEV + + +A Q+ ++ E I + DL + S G +G + A+ Sbjct: 192 FEEVYGTDAKNFKFLATIQDNDQPSESKKQLEGYISANKDLVTVFSLGSEGPDVGVMSAI 251 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 +Q ++GKI +G D T + +E+ ++ A+VD ++G V +K I DGE Sbjct: 252 ESQGKSGKILHYGFDYTDTWLKGIEDGRIT-AIVDQDAYQIGYQVIENLVKAI----DGE 306 Query: 300 KV-IQVPIDL 308 K+ +PID+ Sbjct: 307 KIDATIPIDV 316 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 12/218 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ G G+Q AAKD V+ + Q DI++E T + ++A++ I++++++ + Sbjct: 69 YWKGCFAGMQAAAKDLGVKA-VFTGAPQYDINQEVTTMQQVIAKHPAGILVTSINAQAMT 127 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + +A AGIPVI +++ Q +Y AYL +E G+K AADY Sbjct: 128 PVINQAIAAGIPVISFDSDAPQS--KRY--AYLGTSNIEAGQK----AADYLGQALGGHG 179 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDL 221 ++AVI QR +GF++ + ++ PG ++VA Q G K V L+ + P+L Sbjct: 180 EVAVITTPGELNLDQRVQGFKDEMAAKYPGVKVVAVQNGNSDQIKTAQVTSALLQTYPNL 239 Query: 222 NAIMGESGGATLGAVKAVRNQNQAG--KIAVFGSDMTT 257 I GA AV+ + G KI F +D T Sbjct: 240 AGIFCTEADEGTGAATAVQEAGKTGTVKIVSFDTDKAT 277 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 130/290 (44%), Gaps = 40/290 (13%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNA---QGDISKESTFVDTLVARNVDAIILSAVSEN 99 ++ + G ++ K ++ Q L+ TN + D + + V+ ++ VDAI+L+ Sbjct: 49 FFLTMENGAKEYQKHNASQFDLV-TNGIKDETDTASQIRIVEQMIVSKVDAIVLAPADSK 107 Query: 100 GSSRTVRRASEAGIPVICYNTCINQK------------GVDKYVSAYLVGDPLEFGKKLG 147 V++A +AGI V+ + ++ G D A +VGD L K G Sbjct: 108 ALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDNRKGARMVGDYLAKRLKAG 167 Query: 148 NAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDK 206 +A I + N + QR GF++ +K+ GA++V+ Q G +DK Sbjct: 168 DAVG-------IVEGVPTTTNAQ------QRTAGFQDAMKA--AGAKVVSVQSGEWEIDK 212 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 +V ++ P+L A++ + +GAV AVR + GK+ V G D I L++ Sbjct: 213 GNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINAIKPMLKDG 272 Query: 267 QVLKAVVDISGKKMGNAVFA-----QTLKVINKQADGEKVIQVPIDLYTK 311 +VL + K+ AVF + L KQAD V+ P+DL TK Sbjct: 273 RVLATADQYAAKQ---AVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 319 >UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A1WNV9_VEREI Length = 374 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 25/210 (11%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 T +Y V +G++ KD ++V++ + N DI+K+ + +A+ VD +I++ V+E Sbjct: 70 THEWYQNVIKGMKAHGKDLGIEVEVQDANL--DIAKQVAAAEDFIAKGVDVLIITPVNEE 127 Query: 100 GSSRTVRRASEAGIPVICYNTCI----NQKGVDKYVSAYLVGDPLEFG----KKLGNAAA 151 G +R+A A IPV+ + + Y + Y G +E G KKLG A Sbjct: 128 GVVPLLRKAKAANIPVVLEGNPVKGMTTMVAICDYDTGYFSG--IEAGKYAKKKLGGTA- 184 Query: 152 DYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISV 210 K+ + V R KGF + +++ +PGA +V + + G D+A+ V Sbjct: 185 -----------KVMNVGLPLLSATVLRSKGFMDGIRTVIPGATMVHDLDGGGNPDRALEV 233 Query: 211 GEKLIISTPDLNAIMGESGGATLGAVKAVR 240 + D+N I G + ++LG ++A + Sbjct: 234 SSAALAKNADINIIYGINDSSSLGGLQAWK 263 >UniRef50_Q0SII4 ABC ribose transporter, substrate-binding component n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SII4_RHOSR Length = 322 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ Q ++ AA + V+V + NA D++ +S +DT + + VD+II+ AV +G Sbjct: 59 FFLAEGQAIETAAAEKRVEVSVQYANA--DVAVQSDQIDTFIRQKVDSIIVDAVDSDGIG 116 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + RA++A IPV+ + + G D V++ D ++ G++ A Y + Sbjct: 117 PALLRATQANIPVVAVD--VTAIGADATVTS----DNVQAGRE----ACTYLVEQLGGSG 166 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDL 221 K+A+++ A R +G E L + PG ++VA Q + DKA++V ++ + PD+ Sbjct: 167 KVAIVDGAAVSAISDRMQGCREALDAH-PGIEVVATQRADLTRDKAMNVASTILTANPDV 225 Query: 222 NAIMG 226 + G Sbjct: 226 DGFFG 230 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 20/292 (6%) Query: 25 RAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 AA +E+ IG + + + QG + + V+LI +A+ K+++ +D+ V Sbjct: 40 EAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSFV 99 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 A+ VDA+I+S V + + V+ +AGIPVI TC D+ VG E G Sbjct: 100 AQGVDAVIISPVDADALASAVKTVVDAGIPVI---TCSADVTGDQ--GQVWVGSSNENGG 154 Query: 145 KLGNAAADYFIANKI-DQPKIAVINCEAFEVCVQRR-KGFEEVLKSRVPGAQIVANQEGT 202 ++ ++A K+ + KIAV+ Q R G+E VLK P +IV +Q G Sbjct: 155 EIEMK----YVAEKLGGKGKIAVLRGPLGAFAEQGRFAGYETVLKDY-PDIEIVFDQTGN 209 Query: 203 V-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 ++A+++ E L+ + +L+AI+ ++ G LGA++AV+ + +I + G D + Sbjct: 210 WQREEAMALIENLLTAGTELDAIVCQNDGMALGALEAVKAAGKKDQITITGIDAIVDALD 269 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV--IQVPIDLYTK 311 ++ ++ + + NA L + K A GE V + +P +L TK Sbjct: 270 SIKAGELDATCFQDAIGQGTNA-----LDMAVKAARGETVERMDIPFELVTK 316 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/262 (23%), Positives = 117/262 (44%), Gaps = 15/262 (5%) Query: 29 KEMTIGAIYLDTQGYY----AGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 + + +G + YY AGV++ + ++++ + ++Q + ++ + Sbjct: 69 RPLKLGFLPTAMDTYYQRVLAGVKEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWI 128 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 +DAI ++ +E ++RRA+EAGIPV +N+ + Y V D Sbjct: 129 NDGIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPFAD-------NPYYVSDVGYDQS 181 Query: 145 KLGNAAADYFIANKIDQP-KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GT 202 G A A + + D+ KI ++ QR KGF E++ S+ P +IVA Q G Sbjct: 182 DGGRAQAQWIVDTYGDKEVKIGILEGLPGPHTSQRMKGFNEII-SKHPNFKIVAQQPAGW 240 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 V + +SV E + + PD+ ++ LG ++A++ + GK+A+ G + E Sbjct: 241 VRAQGLSVTENMFTANPDIEVLVALYDEMALGGLQALKAKGLNGKVAIVGYENMKEANAA 300 Query: 263 LENNQVLKAVVDISGKKMGNAV 284 + A VD K+ G + Sbjct: 301 ILTGD-FSATVDTGAKEEGRNI 321 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 14/218 (6%) Query: 29 KEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 KE+TIG + Q ++ ++Q V+ A+ + V++I +AQG+ S + + ++ L+ R Sbjct: 27 KELTIGLAVANLQADFFNQIKQSVE--AEGKARGVKIITVDAQGNSSTQVSQIEDLITRQ 84 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 +DA+I + V+ A AGIPVI +++ D ++ D + K L Sbjct: 85 IDALIYIPAGATAAGVPVKAAKAAGIPVI----AVDRNAPDAPGDTFIASDSVAGAKAL- 139 Query: 148 NAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGT-VLD 205 A+Y + +IA++ + R KGF+E LK PG ++VA Q D Sbjct: 140 ---AEYVGKVTDGKGRIAILQGQLGTTPENDRAKGFQEGLKG-FPGLKVVAEQPAEWAQD 195 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 K +V + L+ P++ G + LGA +AV+ N Sbjct: 196 KGFAVAQDLLQRDPNITVFFGRADAMALGAAQAVKVAN 233 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 20/234 (8%) Query: 25 RAAEKEMTIGAIYLDT--QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 + A K++ +G + L T ++ VR G+QD AK + VQ+ ++AQ D +K+++ ++ Sbjct: 42 KKAPKDLKVG-VSLSTLSNPFFVSVRNGIQDLAKKNKTNVQV--SDAQNDTAKQNSNIED 98 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L+ + VD +I++ V + + V+ A++AGIPVI + + V V++ Sbjct: 99 LIQKKVDVLIINPVDSSAITPAVKDANDAGIPVITVDRSSDGGKVLTLVASN-------- 150 Query: 143 GKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE- 200 K G AA Y I KIA + +R KGF+ K ++ IV+ Q Sbjct: 151 STKGGQMAAKYMIEKLGKDAKIAELQGIPGASATRERGKGFDGAAKGKL---DIVSKQTA 207 Query: 201 GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 G K ++V E ++ D+ I ++ LGAV+AV+ + KI + G D Sbjct: 208 GFDRAKGLTVTENILQGNGDIVGIFSQNDEMALGAVQAVKAAGK--KITIVGFD 259 >UniRef50_C3JFS7 ABC transporter, nucleotide binding/ATPase protein n=2 Tax=Rhodococcus erythropolis RepID=C3JFS7_RHOER Length = 334 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 25/251 (9%) Query: 30 EMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 ++ +G + ++ Q Y+ + ++ A + V +Q+I N D ++ D L+A V Sbjct: 53 KLKVGLVTINLQALYFNQINNAAKNVADKAGVDLQIISGN--DDSVAQANAFDNLIAAGV 110 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 DAII+ A+ +G +V +A AGIPV+ + I+ D +S + E G K+GN Sbjct: 111 DAIIVDAIDTDGIKPSVVKAKNAGIPVVAVDATID----DPALSTQVGTANAEGGAKIGN 166 Query: 149 AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD--- 205 AD +AN + + ++ V ++R+KGF E + R G + GTV+D Sbjct: 167 TLAD--VAN--NTGTVGIVGALNSTVQLERQKGFTETVTGR--GMTV-----GTVVDGRN 215 Query: 206 ---KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 A + E L+ D+ + A +G V AV +Q +I G D++ + Sbjct: 216 IQENAQTAAENLLTGGGDMKYVYATGEPALIGLVAAVNSQKAQDRIEAVGWDLSDQAVGG 275 Query: 263 LENNQVLKAVV 273 L+ LK VV Sbjct: 276 LKAGW-LKGVV 285 >UniRef50_B9TLD6 D-allose-binding periplasmic protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TLD6_RICCO Length = 261 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 22/239 (9%) Query: 29 KEMTIGAIYLDTQGYYAGVRQGVQDAAKD---SSVQVQLI-ETNAQGDISKESTFVDTLV 84 KE+T I +Y V G + AA + S ++V +I + Q D++ ++ ++ + Sbjct: 35 KELTFVFIPKVIHPWYDVVAAGSKFAADELSKSGIKVNVIWDQPPQADVADQNQRIEANI 94 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF-- 142 R D + ++ + + + + + A +AG+ V+ +N+ + DK+ +G F Sbjct: 95 GRKPDGLAVACLDQATNVQLLGEAVKAGVNVVTFNSFCD----DKFP---FIGPKSSFQD 147 Query: 143 GKKLGNAAADYFIANKID-QPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ- 199 G LG+ ++A K+D + KI ++ VQR +GF++ L++ P +IV Q Sbjct: 148 GFDLGD-----YLAKKLDGKGKIGILAGSLTASDHVQRIQGFKKALENH-PDMKIVFEQP 201 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 + +L++A+++ E + + PD+ AI G +GA +AV+N AGKI + G D E Sbjct: 202 DNDILEQAVTLTENALQAHPDMAAIFGADASNPIGAARAVKNAGMAGKITIVGMDDLPE 260 >UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7M6_9FIRM Length = 325 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 135/288 (46%), Gaps = 36/288 (12%) Query: 39 DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSE 98 DT Y A R ++DA + + + + T+A GD + ++ +D + +N A ++SA+S Sbjct: 50 DTYNYCAKFRSYLKDATEAKGISITV--TDAGGDTNVQNGQIDDFIVQN--ANVVSAISN 105 Query: 99 N--GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF-----GKKLGNAAA 151 + GS + A +AG+P + + T ++ G D Y VG P E G+ L +A Sbjct: 106 DLDGSIPALEAAKDAGLPYVSFLTSVS--GGDDYDGYIYVGSPNEDAGKAQGEYLCDAFP 163 Query: 152 D-----YFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIV--ANQEGTVL 204 D YF DQ V R+KG EE LK + P +I+ N E + Sbjct: 164 DGASILYFTGAPNDQQY------------VDRKKGLEEALK-KNPNIKILDEYNVENSK- 209 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 D +S E ++S ++AI+ ++ LG V+A+++ + I V G D + + Q ++ Sbjct: 210 DLGMSTAEDSLLSYDKIDAIVCQNDDGALGVVEALKSAGKLDSIQVLGIDGSDDALQSIQ 269 Query: 265 NNQV-LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 + ++ + A+ D + A + LK AD E V +P + TK Sbjct: 270 DGEMTMTALQDAKAQAEAGADIFEKLKKGTDPADIEDV-NIPFKIVTK 316 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 17/302 (5%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 A A + ++T G + + T Y+ ++ G Q+A ++ DI + + ++ Sbjct: 44 ADAPDDKLTFGLVVMSTNSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMEN 103 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L+ VDAI+L+ + + + V +A +AGIPVI ++ +N DKY S ++ D + Sbjct: 104 LINSKVDAILLTPLDSDALAAPVEKAMDAGIPVIVIDSAVN---TDKYTS-FIATDNVAG 159 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 G+ A + I + ++ V+N A R +G EE + V G ++ Q Sbjct: 160 GRM----AMERLIESIGGSGEVVVVNALAGIPSNDARGQGAEE-YAATVDGITVLPQQHC 214 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 +A++ E +II P+L I LGA +A+ ++ +AG+I + D + + Sbjct: 215 LDQAEAMTATENVIIGNPNLKGIFATFNRGALGAAQAIVSKGKAGEIKMVAFDADADEIK 274 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ-VPIDLYTKTEDGKQWLA 320 LE+ + A+V +MG +K +N GE+V + V ++ T+D A Sbjct: 275 LLEDGTI-DALVVQQPYEMGKIGIEYAVKALN----GEEVPKTVAPEVVIATKDNMNDEA 329 Query: 321 TH 322 H Sbjct: 330 IH 331 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 139/309 (44%), Gaps = 39/309 (12%) Query: 6 RTTRNLLLMATLLGSAL--FARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 + +N+ + L+ SAL A AA+K + + Y+ +RQG ++ AK+ ++ Sbjct: 4 KLLKNIFKFSALI-SALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNID-- 60 Query: 64 LIETNAQGDISKEST--FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 LI A+ + S E V+ ++A+ VDAII++ ++A +AGIP+I + Sbjct: 61 LIVQVAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVR 120 Query: 122 INQK------------GVDKYVSAYLVGDPL--EFGKKLGNAAADYFIANKIDQPKIAVI 167 ++ K GVD + YL L GKK GN A I + V Sbjct: 121 LDAKAAEAAGLKFNYVGVDNFNGGYLEAKNLAEAIGKK-GNVA--------ILEGIPGVD 171 Query: 168 NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMG 226 N E QR+ G + + P +IVA+Q ++A++V ++ + P++N I Sbjct: 172 NGE------QRKGGALKAF-AEYPDIKIVASQSANWETEQALTVTTNILTANPNINGIFA 224 Query: 227 ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA 286 + +GAV AV N AGK+ V G D +A E ++ +D KK Sbjct: 225 ANDNMAIGAVTAVENAGLAGKVLVSGYD-GIPLAIEYVKQGKMQNTIDQLPKKQVAIAIE 283 Query: 287 QTLKVINKQ 295 LK INKQ Sbjct: 284 HALKQINKQ 292 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 18/298 (6%) Query: 21 ALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 A+ A AA E IGA L Q +Y + ++ A+ +V +++ + A D+SK+ Sbjct: 17 AMMAGAASAE-GIGASLLTQQHPFYIALADAMKKEAQAENVPLEV--SIANQDLSKQLAD 73 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V+ + + VD II+S V G + +A +AGI VI + N VD V++++ D Sbjct: 74 VEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANN--VD--VTSFVGTDN 129 Query: 140 LEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 G+K AA+ ++ +AVI+ + V R +GF++ + ++ P +IVA Q Sbjct: 130 FAGGEK----AAELMAKTIGEKGNVAVIDYPTVQSVVDRIEGFKKGI-AKYPDIKIVAIQ 184 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 G +A+S + ++ + PD+ I G A L A AV++ ++ V G D E Sbjct: 185 PGITRPEALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAKLENQVKVIGFDGMEEA 244 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV-IQVPIDLYTKTEDGK 316 ++N+ V+ V+ +MG KVI GE+V + PI T+DG+ Sbjct: 245 RNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIK----GEEVPAKQPIVPGVVTKDGE 298 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 13/229 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ ++ G++D AK++ V++ +++ + + + V + VD I++S Sbjct: 67 FWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQDAITNKVDGIVISPTDSASCI 126 Query: 103 RTVRRASEAGIPVICYNTCINQKGVD--KYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 + A EAGIPV+ I G D +YVS ++ D KKLG AD NK D Sbjct: 127 AVLSAAEEAGIPVV-----ICDIGTDSGEYVS-FISTDNSGGAKKLGEYVADKL--NKGD 178 Query: 161 QPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPD 220 + +N +A + V R++GFEE +K ++ E D+ + + LI S P+ Sbjct: 179 EIAQIALN-QARKNGVLRKEGFEEGIKEKLKEVDF-RQMEKVNRDEGVRYTQDLITSYPN 236 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVL 269 L I S ++GAV A++ N K + G D + E+ + +++ +L Sbjct: 237 LKCIFCHSEDPSMGAVTALKEINN-DKCKIVGFDCSPEVVEAIKSGDIL 284 >UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0C383_9CLOT Length = 336 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 10/228 (4%) Query: 38 LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVS 97 +D Q Y +G A +S ++I + D + ++ + ++A +DA+ L V Sbjct: 59 IDMQNPYFITLEGATREAVESG-GYRMITKDPASDAAAQAAQIQEMIAEGIDAVFLCPVD 117 Query: 98 ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN 157 + +++ +AG+ +I ++ + + +YV AY+ D G + I Sbjct: 118 WEEITDSLKALKDAGVRIINVDSQVKEM---EYVDAYIGSD----NHNAGFICGEDLIEK 170 Query: 158 KIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLII 216 + D KIA++ C R GFEE + G ++VA ++ G D+A+ EK++ Sbjct: 171 RPDGGKIAILECPTQNSINDRITGFEEAIADAEKGFEVVAREDTGGEFDRALEAAEKILK 230 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 PD+ AIM + +GA+ AV N + + ++G D + +I +E + Sbjct: 231 ENPDITAIMCGNDQIAVGAMTAV-NLAKMEDVIIYGVDGSPDIKKEFK 277 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 50/321 (15%) Query: 11 LLLMATLLGSALFARAA----EKEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65 LL A L +A+ + +KE TIG ++ ++ +++G++ AK ++V ++ Sbjct: 14 FLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIEKEAKKRGMKVIIV 73 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 + AQ D SK+++ V+ L+ + VDA++++ + S V A+ G+PV+ + Q Sbjct: 74 D--AQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVPVVTIDRSAEQG 131 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ-PKIAVIN-CEAFEVCVQRRKGFE 183 V+ V++ V G A FIA+K+ + K+A + +R GF Sbjct: 132 KVETLVASDNVK---------GGEMAAAFIADKLGKGAKVAELEGVPGASATRERGSGFH 182 Query: 184 EVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + ++ Q+V Q K ++V E L+ PD+ A+ + LGA++A+ Sbjct: 183 NIADQKL---QVVTKQSADFDRTKGLTVMENLLQGHPDIQAVFAHNDEMALGALEAI--- 236 Query: 243 NQAGK-IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA----- 296 N +GK I V G D + A+ I +K+ +A AQ ++I K A Sbjct: 237 NSSGKDILVIGFDGNKD------------ALASIKDRKL-SATVAQQPELIGKLATEAAD 283 Query: 297 ---DGEKV---IQVPIDLYTK 311 G+KV I P+ L T+ Sbjct: 284 DILHGKKVQKTISAPLKLETQ 304 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 40/261 (15%) Query: 72 DISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV 131 D++K+S + + + V AI+LS ++ A+ AGIPV + ++ GV + Sbjct: 81 DVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAAGIPVFTVDIPCHEPGVK--I 138 Query: 132 SAYLVGDPLEFGKK--------LGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 + + D GK+ LG A KIA+++ + E C R KGF Sbjct: 139 ATQIATDNYGGGKEAAKAMIEALGEAGG-----------KIAILHFKQAESCQLRVKGFR 187 Query: 184 EVL-------KSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 E++ KS+V IVA E G D+ E + + PDL+ I + A LGA Sbjct: 188 EIIDAHNAEGKSKV---DIVAELESGGAKDQGYKAAEDTLQANPDLHGIFAINDPAALGA 244 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 A+ + ++ + G D E Q ++ ++ + KMG AQ + I +Q Sbjct: 245 RAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIYADPIQFP-DKMG----AQIVDAIIQQ 299 Query: 296 ADGEKV---IQVPIDLYTKTE 313 + GE + + +P LY K + Sbjct: 300 SKGETLPPQMLIPTSLYKKAD 320 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 147/312 (47%), Gaps = 35/312 (11%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGA-----------IYLDTQGY----YAGVRQGVQD 53 + LLL + + L +E + GA I L ++GY + V G + Sbjct: 2 KKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAKK 61 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 A ++ V+V I + +I K+ V+ + + V A+ ++A+ + + ++A +A I Sbjct: 62 AGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAKI 121 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID-QPKIAVINCE-A 171 PV+ +++ N KG S+++ D K+ A A +A I+ + K+A+++ Sbjct: 122 PVVTFDS--NVKG--DITSSFIATD-----NKVAGAMAGEQLAKLINGKGKVAIVSHNPG 172 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQ--EGTVLDKAISVGEKLIISTPDLNAIMGESG 229 ++R GF E L ++ P +I+ Q +G KA+++ +I + PD+ I G + Sbjct: 173 TTTAIEREAGFREAL-AKYPDIKILNTQFSDGD-KSKALAITLDIINANPDIAGIYGTNE 230 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 + G K V + GK+ + G D + ++A+ LE V+ +V MG QT+ Sbjct: 231 PSIFGIAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKG-VISGLVIQDPYNMG----YQTV 285 Query: 290 KVINKQADGEKV 301 + + K + GEKV Sbjct: 286 QQLYKLSKGEKV 297 >UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGH9_9FIRM Length = 288 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 5/226 (2%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKE-STFVDTLVARNVDAIILSAVSENGS 101 ++ + G+Q A+ V + +A+ DI + D + + + D + ++ ++ Sbjct: 10 FWVDMADGIQAEAEKLGVTADIFAVDAETDIDGQLKKCEDAINSGSYDGLGVAPITATNL 69 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 V A++ G+PV+ + I++ + K Y+VG K+G A Y + D Sbjct: 70 ISAVVAANQKGMPVVNIDAKIDEDAL-KEAGGYVVGFATSDNHKVGAIGAQYIMEQLPDG 128 Query: 162 PKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTVLD--KAISVGEKLIIST 218 K+A+I A ++ + RR G +E L++ G V + + D KA+ V +I T Sbjct: 129 GKVAIIEGRAGDLSGELRRDGCKETLEADGSGKYQVVDVQPADWDRQKALDVATNIITKT 188 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 PDLNA + LG ++A+ N GKI + G+D + E + ++ Sbjct: 189 PDLNAFFVANDTMALGVMQAIANTGNTGKILLVGTDASDETKEAIK 234 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 14/229 (6%) Query: 29 KEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 K++TIG + Q ++ ++Q V AK ++V I ++A+GD + + + ++R Sbjct: 39 KQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKV--IVSDARGDAATQVNQIQDFISRQ 96 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 V AII + V+ A+ A IPV+ + N G + +++ D + + LG Sbjct: 97 VSAIIYIPAGATAAGVPVKAANRAKIPVVTVDR--NPPG--EPGKSFIASDSVAAARTLG 152 Query: 148 NAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLD 205 N Y + + ++A++ + V R+KGF + LK+ PG ++V+ Q D Sbjct: 153 N----YVVKESGGKGQLAILQGQIGTTPQVDRQKGFGQALKN-APGIKVVSQQPADWAQD 207 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 KA SV + ++ + P ++ + G++ LGA +AV+ K + G D Sbjct: 208 KAYSVSQDMLQAHPGIDILWGQADAMALGAAQAVKASGSKKKHLIVGFD 256 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 35/298 (11%) Query: 26 AAEKEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 A+ K + +G A+ ++ + GVQ+ AK VQV ++ N D + + V+ L+ Sbjct: 40 ASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTIL--NGNNDPATQLNQVEDLI 97 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 ++V+AIIL+ S V +A+ A IPVI + + KG V+ ++ + +E GK Sbjct: 98 QQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSVT-KG---NVACFIASNSVEAGK 153 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAF---EVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 AAD I K K V+ + R KGF+E + + PG ++VA Q Sbjct: 154 ----MAADELI--KALGGKGQVVELQGVIGTSAEADREKGFDEEI-GKAPGIRVVARQTA 206 Query: 202 TV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK--IAVFGSDMTTE 258 +A++V + ++ + P++ + ++ LGA+KA++ +AGK I + G D E Sbjct: 207 NFDRSQALNVMQNILQAHPNIQGVFAQNDEMALGALKAIQ---EAGKHNIKIVGIDGEKE 263 Query: 259 IAQELENNQVLKAVV--DISGKKMGNAVFAQTLKVINKQADGEKV---IQVPIDLYTK 311 N V K ++ DI+ + + + V K +GEKV + P+ L K Sbjct: 264 AV-----NDVHKGLLYADIAQQPVQEGILGVEYAV--KLVEGEKVPKQVNSPLHLVEK 314 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 14/230 (6%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A AAEK + + YYA +G + A+ + ++ D+ K++ +DT Sbjct: 20 AHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGE--DVKKQNELIDTA 77 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + + V IIL S + +A +AGIPV+ N I VD + + + G Sbjct: 78 IGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREI---PVDDVALEQITHNNFQAG 134 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQE-- 200 ++ N F+ ++ K A + C A CV R K F +V+ + P VA Q+ Sbjct: 135 SEVANV----FVEKMAEKGKYAELTCNLADNNCVTRSKSFHQVI-DQYPDMVSVAKQDAK 189 Query: 201 GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAV 250 GT++D + + ++ + PD+ ++ +G LGA+ A++ N++ I V Sbjct: 190 GTLID-GKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVV 238 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 18/227 (7%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 +Y + + +Q+ A+ + + I +A D +K+ V + + VDAI+L+ + G + Sbjct: 67 FYNLIEKAIQEKAQ--GYKFKPIIMDASQDSNKQLAQVQDFITQKVDAIVLAPTASAGIA 124 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 V A +AGIPV + I +G V +++ D GK AA+ + K Sbjct: 125 PAVDLAKKAGIPV--FTIDIKAEG---DVKSHVATDNYAGGKLAAKYAAEKVLNGK---G 176 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQI--VANQEGTVLDKAISVGEKLIISTPD 220 K+A+I + CV R KGF++ L + P ++ V N G+ +KA ++ + +++ PD Sbjct: 177 KVAIITYSEVQSCVDREKGFKDAL-AEYPNIKVVDVENCSGSA-EKAANLTQDILLKFPD 234 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGK-IAVFGSDMTTEIAQELENN 266 L+ I +GAV ++ AG+ + V G D E QE++N+ Sbjct: 235 LDLIFAVGDPFAVGAVSTIK---AAGRNVKVIGFDGNPEAIQEIKNH 278 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 25/253 (9%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 +++ T + + K+ + V ++++R VDAII++ +S + S +++A+ AGIPVI + Sbjct: 81 KVVYTQSDNQVQKQISNVQSMISRRVDAIIMTPISPSASVPVIQQANRAGIPVI----LV 136 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKG 181 + + +A + D + FG+ A++ + + KI V+N F R KG Sbjct: 137 AGQADTRDTAAEVRADDIVFGR----TGAEWLVRELGGRGKIYVLNGLPGFSTDTLRWKG 192 Query: 182 FEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 ++V R P ++VA+ +A + ++ + P+++ + + G TLGA++A R Sbjct: 193 AKDVF-DRYPDIEVVADAHAAWDTARAKTAVSNMLAAHPEVDGVWSQGGAMTLGAIQAFR 251 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 AGK V MT ENN L V D S + G+ F ++ V+N G + Sbjct: 252 ---AAGKPLV---PMTG------ENNNGLMKVWD-SLNRAGDRRF-DSIGVVNPTWVGSE 297 Query: 301 VIQVPIDLYTKTE 313 + ++L E Sbjct: 298 ALTQTLNLLRGDE 310 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 23/211 (10%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ V+ G DAAK+ V+VQ++ NA+ D+ +++ ++ + + VDA++++ + N + Sbjct: 52 YWKTVQAGANDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAI 111 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 T +A + IPV+ +T N DK S VG KLG +I+ K+ + Sbjct: 112 TTFDKAEKEKIPVVLIDTDANW---DKKKS--FVGTGNIAAGKLGG----EYISKKLKKG 162 Query: 163 KIAVI--NCEAFEVCVQRRKGFEEVLKSRVPGAQIV----ANQEGTVLDKAISVGEKLII 216 A+I +R +G ++ L++ G ++V AN E +KAISV E L+ Sbjct: 163 DEAIIIRGVPGDRTQDERTQGAQKALEA--AGIKVVEIQPANSE---REKAISVMENLLQ 217 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 + P++ + + LGAVKA++ QAGK Sbjct: 218 THPNIKGVFCTNDEMALGAVKALQ---QAGK 245 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 47/285 (16%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ ++ GV AK ++V I +AQ D +K++ V+ L+ + VDA++++ + S Sbjct: 50 FFVSLKNGVVKEAKKQGIEV--IVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAIS 107 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 V+ A+ GIPV+ + V+ V++ V K G AAD+ + Sbjct: 108 TAVQSANSLGIPVVTLDRSAENGKVETLVASDNV--------KGGQMAADFIVEQLGKGA 159 Query: 163 KIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD 220 K+A + +R GF + ++ ++A Q K ++V E L+ PD Sbjct: 160 KVAELEGVPGASATRERGSGFHKTADDKL---NVIAKQTADFDRTKGLNVMENLLQGNPD 216 Query: 221 LNAIMGESGGATLGAVKAVRNQ-----------NQAGKIAVFGSDMTTEIAQ--ELENNQ 267 + A+ + LGA++A+R+ N+ AV DM+ IAQ EL Sbjct: 217 IQAVFAHNDEMALGAIEAIRSSGKEILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKL 276 Query: 268 VLKAVVDI-SGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 ++A DI +GKK+ EK I P+ L TK Sbjct: 277 AVQAARDILNGKKV------------------EKTIPAPLKLETK 303 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 11/191 (5%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 +LI +A GD++K++ + L+ R VD +I++ V+ + + A + G+PVI + I Sbjct: 65 ELIFLDANGDVNKQNNDIQDLLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSI 124 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF-EVCVQRRKG 181 N GV +A+L D ++ GK +G+A + K+ I +A V RR G Sbjct: 125 NGGGV----TAHLGRDNVKMGKAVGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDG 180 Query: 182 FEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 F + LK G +IVA A++ + L+ + PD+ + + +GA+K + Sbjct: 181 FHDALKGS--GFKIVAGPYAEYTRANAVTAMQDLLQAHPDVKVVYAHNDDMAMGALKVLA 238 Query: 241 NQNQAGKIAVF 251 +AGK VF Sbjct: 239 ---EAGKKDVF 246 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 26/289 (8%) Query: 31 MTIGAIYLDTQGYYAGVRQGVQDA--AKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 + IGA L Q + V DA AK + V+LI +A+ K+ V++ + + V Sbjct: 32 LVIGATMLSMQNEFI---VNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQGV 88 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 DAII++ SS ++ A +A IP+I N+ + K +A++ D E + Sbjct: 89 DAIIMNPAEVEASSPAIKLAMDAKIPIINVNSETSAK-----PTAFVGSDDTESAR---- 139 Query: 149 AAADYFIANKIDQPKIAVINCEAF---EVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD 205 A +IA K+ K ++ F ++R G +++LK+ PG +++A Q G D Sbjct: 140 -IAMKYIAEKLG-GKGNILMMHGFMGQAAQIKRDNGAKDILKAN-PGLKLLAEQSGE-WD 195 Query: 206 KA--ISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 +A +S+ E I S D +NAI ++ +GAVKA+ GK+ V D + Q Sbjct: 196 RAKGMSLTENWIQSYGDKINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDALQA 255 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 ++ L A V + K+ G +K K+A EK + +P L K Sbjct: 256 VKKG-TLDATVFQNAKEQGGKAIETAVKAAKKEA-FEKEVLIPFQLVDK 302 >UniRef50_C0BXQ7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BXQ7_9CLOT Length = 320 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 140/283 (49%), Gaps = 15/283 (5%) Query: 28 EKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 +K+ TI I + T ++ + +G QDAA + +++ + D +K+S + + + Sbjct: 37 DKKRTIACIVGNQTMDFFVNISKGAQDAAGEGD---EVLVYSFDDDANKQSQIFEDCITK 93 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 VDAI+ + + ++R+A +AGIPVI + + KGV+ +A ++ D + G Sbjct: 94 KVDAILTTILDSEAIITSLRKAEQAGIPVITMDAYPDGKGVEDLYAAAVLDDLYQAGHDH 153 Query: 147 GNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-L 204 G A + I K KI V A EV QR +GF++ + + P +IVA EG+V Sbjct: 154 GVALCE-AIGGK---GKIGWVWYTGASEVAKQRCEGFKDAV-AEYPDVEIVAYSEGSVDT 208 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQEL 263 + +S + + DL+A A + AV A+ + + ++A+ SD ++ + + Sbjct: 209 ESCLSQISAQLQNYSDLDAYWAPWANAGMAAVTALASAGMSDVRLAI--SDCNEDLVKYV 266 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 + +V+ A++D++ + +G + ++K E++ V + Sbjct: 267 LDGKVI-ALMDLNARGIGEKAMELACEYLDKGKVSEQINYVEV 308 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 137/304 (45%), Gaps = 40/304 (13%) Query: 26 AAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF--VDT 82 AA+ + T+G I ++ + G + A++ +L+ Q + ES V+ Sbjct: 59 AAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERG-DYELLAVGMQNETDFESQINAVEN 117 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN-----QKGV-------DKY 130 + + VDAI+++ R +RRA EAGI VI ++ ++ Q+G+ D Sbjct: 118 FITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGPDNR 177 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSR 189 + A + G+ L G+ LG ++ +I + QRR GFE+ + + Sbjct: 178 MGAEMAGNAL--GEALGEGG------------RVVIIEGNPGADNATQRRLGFEDAIATH 223 Query: 190 VPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK- 247 G +++ ++ ++A V ++ + PDL +M + +G ++A+ + AG+ Sbjct: 224 --GLELLESRTAHWETEEANQVFAAMLTAHPDLQGVMAANDSMAIGVIEAL---DAAGRD 278 Query: 248 -IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 I V G D + +E+ ++L A VD G+ M L+V+ D E ++ PI Sbjct: 279 DILVVGFDAVPAVLPMIEDGRML-ATVDQFGQAMAANAIDLALEVLETGVDLEGWVRTPI 337 Query: 307 DLYT 310 +L T Sbjct: 338 ELVT 341 >UniRef50_C2L0C0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2L0C0_9FIRM Length = 337 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 99/193 (51%), Gaps = 5/193 (2%) Query: 72 DISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV 131 D++K+ + + DA+ + V +G + + S+A IP+ +T + ++ ++KYV Sbjct: 93 DLNKQLSQLSDCANSGYDAVFVIPVDSSGITAGLAEISDAKIPIYNVDTAVIEEDMNKYV 152 Query: 132 SAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVP 191 + ++ + G+ +G A + D KIA+++ + E CV R GF + L + Sbjct: 153 TQFVGTNAFMAGELVGKQLA----SKHPDGAKIAILDFPSNESCVDRVNGFMKGLGEQKD 208 Query: 192 GAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAV 250 IVA Q+G LDK++ + E ++ + DL+A + + LGA A++ N+ GK+ V Sbjct: 209 KFTIVAQQDGGAALDKSLGLAEDILTANSDLDAFFCINDPSALGAAAAIKASNKKGKVEV 268 Query: 251 FGSDMTTEIAQEL 263 + D + E Q L Sbjct: 269 YSIDASPEGKQAL 281 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 141/289 (48%), Gaps = 22/289 (7%) Query: 30 EMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVD 89 ++ IGA D + Q + + V++I +A D SK+ + V+ + + VD Sbjct: 56 KIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQVENFIQQKVD 115 Query: 90 AIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNA 149 AI+L V + V +A++A IP++ N + GVDK +AY+ + ++ G Sbjct: 116 AIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFD--GVDK-ATAYVGSESIKAGIMQMEE 172 Query: 150 AADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKA 207 A + KIA++N + E ++R +G ++V+K + P ++V EGT D+A Sbjct: 173 VAKLLNG----KGKIAIMNGQMGHEAQIKRTEGNKQVIK-KYPDMKVVL--EGTAEWDRA 225 Query: 208 --ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 +S+ E + S ++A++ + +GA+ A+ ++ + + V G D T + + ++ Sbjct: 226 KGMSLMENWLQSGKKIDAVVCNNDEMAIGAIMALEDEGKLDDVIVAGVDATPDALEYVKE 285 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ---VPIDLYTK 311 + LK V + K G L+V K A GEKV + +P +L TK Sbjct: 286 GK-LKVTVFQNAKGQGQL----GLEVAIKAAKGEKVEKFNWIPYELVTK 329 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 62/269 (23%), Positives = 121/269 (44%), Gaps = 15/269 (5%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 +Q ++ V QG DAA V + + K++ V + ++ DA+ ++ + E Sbjct: 46 SQSFWVSVHQGADDAAAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEA 105 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 + V+ A A IP+ ++T + D S + +++G AA+ IA Sbjct: 106 ALTPAVQSAKSASIPLFAFDTAF-ETNADAITSTVKTSN-----REVGKVAAENLIALLN 159 Query: 160 DQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD--KAISVGEKLII 216 + K AVI + + +RR GF + +K P ++V + + D KA + ++ Sbjct: 160 GKGKYAVIAHSQTDATSTERRDGFLDYMKKNAPDMEMVGEVQYSNADQAKAQDIASAILQ 219 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDI 275 + PDL+AI + +GA V + ++G K+ + G D + + Q+ + V+ V Sbjct: 220 ANPDLDAIFATNEATVVGAATPVESALKSGHKVLLVGVD-SGKAQQQYIRDGVISGSVSQ 278 Query: 276 SGKKMGNAVFAQTLKVINKQADGEKVIQV 304 + ++G +K +N GEK+ +V Sbjct: 279 NPYQIGYKTIENAVKSLN----GEKIDKV 303 >UniRef50_C0C5Y6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Y6_9CLOT Length = 329 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 17/238 (7%) Query: 25 RAAEKE---MTIGAIYLDTQGYYAGVRQGVQDAAKDS-SVQVQLIETNAQGDISKESTFV 80 +AA+ E + IG I D G++A ++ G++ AK+ +VQV E D +K+ + Sbjct: 37 KAAKTEGDTIKIGFIPSDLAGFFAQLKTGLEKYAKEEGNVQVTTKECI---DSAKKIDAI 93 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA--YLVGD 138 + + II + + +A G+ Y+T I +G D + A Y +G Sbjct: 94 NNFANGGYNVIICHVDNAVALKPAMEQAQSKGVYFFAYDTDI--EGADGFFGADNYAMGQ 151 Query: 139 PLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVAN 198 + GK L F + ++ + ++N + F V+RRKG E +K P IV + Sbjct: 152 VI--GKMLSEWVNKTF--DSSEEVQCGILNYDPFPFLVERRKGIEAAIKEEAPNVVIVDS 207 Query: 199 QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK--IAVFGSD 254 Q+ + D+ SVG PD+ A+ G + +A +++ +A + + +FG D Sbjct: 208 QQAGLEDEGTSVGNAWFTKYPDMKAVAGINDAGCYALYQAWKSKGKADQDHVGIFGVD 265 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 13/251 (5%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 +L+ +AQ K+ + ++ + AI L+ V+ T+ A A IPVI + + Sbjct: 80 RLVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPV 139 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 + V A + D + G+ A D Q K+A++ + CV R GF Sbjct: 140 PDADL---VLAQVASDNVAAGRLAAQALGD-----ARPQAKVAILQYSVNKACVDRVAGF 191 Query: 183 EEVLKSRVPGAQIVANQEGTVLDKAI-SVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 +VL PGA I+A Q+ +A V L+ PDL+A+ + +G V A+ Sbjct: 192 TDVLAKSFPGATIIARQDVKGTSEATRPVMRDLLGRFPDLDAVFPINDPGAIGCVSAIDA 251 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGN-AVFAQTLKVINKQADGEK 300 ++GK+ V D + E AQ + N + KK+G+ A A + K D E Sbjct: 252 AGRSGKVLVVTVDGSREAAQFILNGGIHSTSAQFP-KKIGSLAAGAAYDHLAGKPVDKE- 309 Query: 301 VIQVPIDLYTK 311 I+VP+ L TK Sbjct: 310 -IKVPVTLVTK 319 >UniRef50_B1G9I5 Monosaccharide-transporting ATPase n=2 Tax=Burkholderia graminis C4D1M RepID=B1G9I5_9BURK Length = 358 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 21/238 (8%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS-EAGIPVICYNT 120 ++ I A D++ + + VD ++++ + A+++ V+ + + V R EA IP+I YN Sbjct: 78 LRYIIQGANEDVATQDSQVDAMLSQGIKALVIIPVNVDAGKQIVERVKREAKIPIISYNY 137 Query: 121 CINQKGVDKYVSA--YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 I VD + Y VG+ L+ + L A ++ V E +V Q+ Sbjct: 138 VIPSTAVDYWAGRDNYFVGE-LQARQALQEAKKGNWVI---------VSGPEGIDVARQK 187 Query: 179 RKGFEEVLKSRVPGAQI--VANQEGTVLDKAIS---VGEKLIISTPDLNAIMGESGGATL 233 +G VLK + +I V++Q + V + L ++ A++ G L Sbjct: 188 TEGALRVLKPHIDSGEIRIVSHQWHDAWSPEGALKQVEDALTSHNNNIQAVISNEDGMAL 247 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV-LKAVVDI--SGKKMGNAVFAQT 288 GA++A+ Q AGK+ + G D E+A+E+ ++ + A D+ G+ +A FA T Sbjct: 248 GALRALAEQKLAGKVWLCGEDCWPEVAREIVAGRINMSAWTDLIQMGRVAADAAFALT 305 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 15/200 (7%) Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 LI NA+ + + + +++ VD I+ S + E+G +R A EA IPVI + IN Sbjct: 76 LIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIPVILMDRKIN 135 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI--DQPKIAVINCEAFEVCV-QRRK 180 K Y +A++ D +E G+ G DY + DQ I V+ A + R + Sbjct: 136 VKDESLY-TAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGTTAMFGRTQ 194 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGE----KLIISTPDLNAIMGESGGATLGAV 236 GFEE+ ++ I+ E T D + GE +L+ + P+++ ++ ++ T GA+ Sbjct: 195 GFEEI-AAKHENWNIL---EQTNADFTTAKGEEEMRRLLNTYPEIDVLVSQNDDMTFGAL 250 Query: 237 KAVRNQNQAGKIAVFGSDMT 256 +A+++ AG+ G D+T Sbjct: 251 EAIQS---AGRTTGTGGDIT 267 >UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=C6C3I7_DICDC Length = 311 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 15/236 (6%) Query: 9 RNLLLMATLLGS-ALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIET 67 R++LL A + + +L A AAEK + + YYA +G A++ + ++ Sbjct: 4 RSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTVLSH 63 Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 D+ K+S +D + + V I+L S +++A AGIPV+ N I V Sbjct: 64 GE--DVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREIP---V 118 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVL 186 D + + + G + N F+ ++ K A + C A CV R K F +VL Sbjct: 119 DDVALVQITHNNFQAGSDVANV----FVEKMGEKGKYAELTCSLADNNCVTRSKSFHQVL 174 Query: 187 KSRVPGAQIVANQE--GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 + PG +A Q+ GT++D + + ++ + PD+ ++ +G LGA+ A++ Sbjct: 175 -DQYPGMASIARQDAKGTLIDGK-RIMDSILQAHPDVKGVICGNGPVALGAIAALK 228 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 20/232 (8%) Query: 29 KEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 K+ IG A+ T ++ V+ GVQ AA + +++ + T+AQ D + + V+ L+ + Sbjct: 64 KKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYI--TDAQDDPTIQMKDVENLITKK 121 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 DAII+ + ++ +EAGIPV + N V ++ + K G Sbjct: 122 PDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEVISHIGYDAI--------KSG 173 Query: 148 NAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD- 205 A Y + + KI I V R +GF EV+K P +IVA Q V D Sbjct: 174 RMAGQYLVDTLGGKGKIVEIQGIMGTNVAQNRSQGFNEVMKDN-PDMEIVACQ---VADF 229 Query: 206 ---KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 K +SV E ++ + P+++ + + LGA++A+ + +I G D Sbjct: 230 DRAKGMSVMENILQANPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCD 281 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 16/193 (8%) Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 ++ +GD + ES +DT + +AIIL + +GS VR+A EAGIPV N INQ+G Sbjct: 65 SSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEINQQG 124 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK-IAVINCEAFEVCVQRRKGFEEV 185 + A LV + + G LG A +I + D + + + + R G+E V Sbjct: 125 L---AEAQLVSNNAQ-GAALG---AQQWIKSVGDSARYVELKGAPSDNNAATRSNGYETV 177 Query: 186 LKSRVPGAQI----VANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 L S+ PG + VAN + T + + + ++ + PD++ ++ + LGA+ A++ Sbjct: 178 L-SQYPGLEKVGSDVANWDRT---QGFNKTQSMLQANPDIDGVISGNDEMALGAISALKE 233 Query: 242 QNQAGKIAVFGSD 254 + + V G D Sbjct: 234 AGKLDDVVVGGFD 246 >UniRef50_Q5ZZ27 ABC sugar transporter, periplasmic sugar binding protein n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZZ27_LEGPH Length = 294 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 10/180 (5%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 LL + L+ +++FAR +T G+ Y+ + QG + AA++ V +Q++ Sbjct: 8 LLCFSLLISASVFARDKYYLITHGS----QDPYWTSLFQGAKKAAEELKVDLQILAPPGA 63 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 D+ K+ F+++ +A I + S+ S++++RA++ IPVI +T K + Y Sbjct: 64 NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPY 123 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR-KGFEEVLKSR 189 + +L D L GKKLG A + + K + V+N + + +++R G + +L+ + Sbjct: 124 L-VFLGSDNLLAGKKLGEKALELTPSAK----RALVLNPQPGHIGLEKRAYGIKTILQDK 178 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 19/222 (8%) Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V+ + VD +I+S + S++V RA + GIPVI Y+ N DKY +A++ D Sbjct: 75 VNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTNS---DKY-TAFIGCDN 130 Query: 140 LEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE---VCVQRRKGFEEVLKSRVPGAQIV 196 GK +G FIA ++ Q K ++ E ++R +GF + +K PG Q+V Sbjct: 131 YTIGKSMGT-----FIAQQL-QGKGRIVEISGLEGSSPALERHRGFMDAIKP-YPGLQVV 183 Query: 197 ANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD- 254 A++EG ++ I ++++ T D + + + GA A R G D Sbjct: 184 ASEEGNWKEEGGIQAMKRILKQTQDFDYVFAHNDCLAWGAYVAARQMRVKRNYKYTGVDG 243 Query: 255 MTTE-IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 M TE EL + + +A K G+ V A +K++ Q Sbjct: 244 MATEGGGLELVRDGIFEASYLYPTK--GDEVIALAMKILKHQ 283 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 28/314 (8%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQV 62 ++ T +L A G+ FA +++TI A+ T ++ + G++DAA+ +V + Sbjct: 2 RLLTASTAVLAALAWGTLGFA----QQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNL 57 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN--- 119 L ++ D+ + L+ R A++++A++ +++A++ IP++ + Sbjct: 58 ILQAVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNL 117 Query: 120 --TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP---KIAVINCEAFEV 174 + ++GV ++ + D ++ G +AA+Y ++ K+ Q K+ VI A V Sbjct: 118 DPAVLQREGVK--IAFSISSD----NRRAGASAAEYVVS-KLGQGFSGKVLVIEGLAGNV 170 Query: 175 C-VQRRKGFEEVLKSRVPGAQIVANQEGTVLD--KAISVGEKLIISTPDLNAIMGESGGA 231 RR GF E LK P AQIVA G D KA ++ + PDL AI + Sbjct: 171 TGAARRDGFTERLKQIAPNAQIVATLPGD-WDRLKAANITNDTLQRHPDLAAIYCANDTM 229 Query: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 LGAV+AV + K+ V G+D ++ + + ++ +V + +G+ LKV Sbjct: 230 ALGAVEAVFAAGK--KVLVVGTDGNSDAVKSIRAGRLNASVAQLP-FLVGSRAIENVLKV 286 Query: 292 INKQADGEKVIQVP 305 I + K+I VP Sbjct: 287 IKGEQVDPKII-VP 299 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 15/193 (7%) Query: 48 RQGVQDAAKDSSVQ---VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRT 104 R+ V + + + Q V L+ T A+ D ++ +D+++AR VD I+++ + N + Sbjct: 40 REKVNNEMRQAQYQYKNVDLLFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPA 99 Query: 105 VRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK- 163 + RA A IPVI + ++K + +A + GD +E G+++ F+A+K+D Sbjct: 100 IERAYRAHIPVILF----DRKVKTPHYTASIGGDNVEAGREVAR-----FLASKLDGKGT 150 Query: 164 -IAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLN 222 + + + ++R +GF EV+K+ PG ++V + L++A + ++ + + Sbjct: 151 VVEITGLKDASPVIERHRGFHEVMKN-YPGIKVVTLESNWKLERAQELMKQYLDKGGHAD 209 Query: 223 AIMGESGGATLGA 235 + G S +GA Sbjct: 210 GVFGHSDLGAIGA 222 >UniRef50_B5K960 ABC transporter, periplasmic sugar binding protein n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K960_9RHOB Length = 254 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 106/205 (51%), Gaps = 19/205 (9%) Query: 60 VQVQLI-ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 V++++I + Q D++ ++ ++T + R D I ++ + + + + A +AG+ VI + Sbjct: 6 VEIEMIWDQPPQADVADQNRRIETNIGRQPDGIAVACLDRVTNVQLMNEAVKAGVHVINF 65 Query: 119 NTCINQKGVDKYVSAYLVGDP---LEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEV 174 N+ + A+ P ++ G LG +Y + IA+++ Sbjct: 66 NSFCD--------DAFPFVGPKSSVQDGYDLG----EYLAEELGGEGTIAILSGSLTASD 113 Query: 175 CVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGGATL 233 V+R +GF++ L S+ P +IV Q + +LD+AI++ E ++ + PD++ I G + + Sbjct: 114 HVERIEGFKDAL-SQHPEMEIVFEQPDNDILDQAITLTENMLQAHPDIDGIFGSNASNPI 172 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTE 258 GA +AV+N +AG+I + G D E Sbjct: 173 GAARAVQNAGKAGEIVIVGMDDLPE 197 >UniRef50_C6BAM6 Sugar ABC transporter, substrate-binding protein n=14 Tax=Rhizobiales RepID=C6BAM6_RHILS Length = 379 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 13/184 (7%) Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L+ T+AQG+ + + +++ NVDAI++ A S N R + A + GI V+ +++ +N Sbjct: 108 LMITDAQGNAQTQIQHIQSMIDANVDAIVVIAGSSNALDRVISDACDKGIAVVNFDSLVN 167 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKGF 182 DK V+A + D E+G AA + + + KI ++N A V RRKG Sbjct: 168 ---TDK-VTAKINTDSNEWGA----TAAKWMVGQLGGKGKIIIMNGPAGISVSDDRRKGA 219 Query: 183 EEVLKSRVPGAQIV--ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 + VL + PG Q++ N E V A L+ + P+++ ++ G + G+V A Sbjct: 220 QPVLDAN-PGLQVITETNTEYNVA-PAQEAMTSLLFANPEIDGVLSLGGALSAGSVLAFE 277 Query: 241 NQNQ 244 Q + Sbjct: 278 RQGR 281 >UniRef50_A4ILL0 Methylthioribose-binding protein n=29 Tax=Bacillales RepID=A4ILL0_GEOTN Length = 382 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 42/255 (16%) Query: 26 AAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 AA +M+IG + Y AGV++ VQ + VQ+ NA D++K +++V+T + Sbjct: 70 AAIMQMSIGTF---SSQYIAGVKEQVQKFGGE--VQI----YNADNDLTKMASYVETAIT 120 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV-----DKYVSAYLVGDPL 140 +NVDAI+L + V++A E GIPV+ ++ +N GV D Y A+ Sbjct: 121 QNVDAILLDHGRADALEGPVKKAVEKGIPVVAFDNDLNIPGVTVIDQDDYSLAW------ 174 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVAN-- 198 K L A D + KI I F ++RR + K R P + VA Sbjct: 175 ---KTLKTLAEDLN-----GEGKIVTIWVGGF-TPMERRHVIYDAFKKRYPNIKEVAKFG 225 Query: 199 --QEGTVLDKAISVGEKLIISTP---DLNAIMGESGGATLGAVKAVRNQNQAGK--IAVF 251 T LD + E ++ P D++A+ GA +A+ QAG+ I V+ Sbjct: 226 TASANTALDTQTQM-EAILKKYPNKGDIDAVFATWDEFAKGATRAIE---QAGRTEIKVY 281 Query: 252 GSDMTTEIAQELENN 266 D++ E Q ++ + Sbjct: 282 SIDLSDEDLQMIQKS 296 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/273 (23%), Positives = 116/273 (42%), Gaps = 12/273 (4%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 T Y+ + +G + A ++ ++GD + + L+++ +A++ S ++ Sbjct: 67 TNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENLISQGFNALLFSPQTDA 126 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 V A+ AG+PV+ N + + YV G+ G A++FIAN+ Sbjct: 127 NLIPAVEAATAAGVPVLNVNDAVIPSAAN-YVGNVQKGN--------GVNVANWFIANRP 177 Query: 160 DQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIIST 218 D K+AVI + QR GF E + + + + ++A + ++ Sbjct: 178 DGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSREEAFNAASTILQQY 237 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK 278 PDL + G LG V+AV+ +A ++AVFG+D ++ + L VD Sbjct: 238 PDLIGFYANNDGMALGVVEAVKAAGKAEQVAVFGTDGISDAYAAVRAGD-LTGTVDSFPV 296 Query: 279 KMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 G L+++ Q D +V+ P L TK Sbjct: 297 LTGEIAMEVALRLMAGQ-DLPRVVATPQALITK 328 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 30/258 (11%) Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 TN+ DI+K+ + + L+ + VD I+++A S + V A+EAGI V+ ++ ++ Sbjct: 89 TNSNDDINKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVD--- 145 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVC-VQRRKGFEEV 185 D+ V+ + D EFG+ AD+ + + KI V+N A R G EEV Sbjct: 146 TDEQVATVGI-DQTEFGR----VCADWLVKKLDGKGKIVVLNGIAGTANDTMRWNGAEEV 200 Query: 186 LKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 K + P +I+ + + + + E ++ + P+++ + + G T GA+ A Sbjct: 201 FK-QYPDIEILGSANASWDYAQGKAAMESMLSAYPEIDGVWSQGGAMTQGAIDAFI---A 256 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVD-----ISGKKMGNAVF--AQTLKVINKQAD 297 AG+ V MT+E NN L+A ++ +S + + A+ L+ + K D Sbjct: 257 AGRKLV---PMTSE-----GNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLD 308 Query: 298 GEKVIQ-VPIDLYTKTED 314 GE+V + V +D+ TED Sbjct: 309 GEEVPKRVTLDIPVVTED 326 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 35 AIYLDT--QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92 AI L T ++ +++G++ A ++V +I +++ D+ ++ ++ L+++ AI Sbjct: 48 AIVLKTLSNPFWVEMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIG 107 Query: 93 LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY---VSAYLVGDPLEFGKKLGNA 149 ++ +S + + A++ GI V+ + ++ + + K V A++ D ++ G K Sbjct: 108 IAPLSPVNTIPAIVEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAK---- 163 Query: 150 AADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTVLDKAI 208 A+Y I + ++A+I ++ + RR+G E K+ + + KA+ Sbjct: 164 GAEYIIGKLPEGGEVAIIEGKSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKAL 223 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 V LI P+L AI + LGAV+AV N + G+I V G+D E Sbjct: 224 DVAANLIQKYPNLKAIYACNDTMALGAVQAVANAGKTGQILVVGTDGAPE 273 >UniRef50_B0C3I1 Periplasmic binding protein/LacI transcriptional regulator, putative n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C3I1_ACAM1 Length = 702 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 13/296 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 AR + IG I + G++ AA + +V++ + + E+ + L Sbjct: 399 ARPRSPRLRIGLIKSADSTIFKAYELGMRRAA---NRRVEIWSLLSPSGVQNEAQTIQEL 455 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + +DAI+LS GS + +A +AG+ VI + C +++ V A + L+ G Sbjct: 456 IDSGIDAIVLSPEDPLGSIPALEKAYQAGVVVITVDFCFDKETAKDMVFACFNTNSLKMG 515 Query: 144 KKLGNAAADYFIANKIDQP-KIAVINCEAFEVCVQRRKGFEE-VLKSRVPGAQIVANQEG 201 + + DQP I V++ +E +GF + S V ++ + Sbjct: 516 ADSAEHLTQWAATHLQDQPLNIGVVDSAEYERYYPNYQGFLNGMAASDVTWKEVSSVDAI 575 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG-SDMTTEIA 260 T D I+ ++++ P +N + G S AT +V AV + K+ VFG D++ + A Sbjct: 576 TQAD--IAHIKEMLSENPQINILWGGSNLATELSVAAVEDLGLQAKVKVFGILDLSKDKA 633 Query: 261 QE-LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPID--LYTKTE 313 + L+ N L++++D +G K+G ++V+ + + + PID L T+T+ Sbjct: 634 RMLLDPNSPLQSIIDQAGVKIGYKAVHTAVEVLRHKK--TQYTEYPIDHRLLTQTD 687 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/302 (23%), Positives = 139/302 (46%), Gaps = 26/302 (8%) Query: 9 RNLLLMATLLGSA--LFARAAEKEMT----IGAIYL-----DTQGYYAGVRQGVQDAAKD 57 + ++ +A L+ +A +FA + E T IY+ +T ++ V G + AA++ Sbjct: 6 KEIITVAILMAAAVVIFAGILKPEATQTKKCSLIYIPKIRDNTNDFWTSVISGCKMAAEE 65 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 ++++ + + +I +++ + + + DAI+ S S + S ++ A E GI + Sbjct: 66 YESDLEILAPDKEENIEEQNKLLKKAIEQKPDAILFSPSSMDSSDELLKEAKEKGIRITY 125 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ-PKIAVI-NCEAFEVC 175 ++ +K D V+ D + G+ LG A ID+ KIA++ + + Sbjct: 126 IDSYTKEKLQDLTVAT----DNVNAGRMLGEYARKL-----IDKDSKIAIVSHVKGVSTA 176 Query: 176 VQRRKGFEEVLKSRVPG-AQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLG 234 V+R +GF E L IV ++ +K+ + ++L+ PDL I G + + +G Sbjct: 177 VEREQGFREGLGDYADNIVDIVYCN--SLYEKSYELAQELMRKYPDLELIAGMNEYSAVG 234 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 +AV + KIAV G D + E +E V K ++ +MG +T+ ++N Sbjct: 235 VGRAVSDAGAKDKIAVVGVDCSQEAINLMEMG-VYKGIIVQKAFRMGYIGVEETIHMLNG 293 Query: 295 QA 296 A Sbjct: 294 DA 295 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 13/244 (5%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 +LI + + D +++ + ++ ++AIILS V + ++ EA + ++ +T + Sbjct: 92 ELIVKDPKTDPDMQASQIQEMIDEGINAIILSPVDWEKITPSLEALKEADVKIVNVDTQV 151 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 K +D YV AY+ D G G + I D K+A++ C +R GF Sbjct: 152 --KEMD-YVDAYIGSDNYNAGVLCG----EDLIKRCPDGGKVAILECPTQNSVNERITGF 204 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 EE L G +IVA ++ + K++ +K++ D+ AIM + +GA K N Sbjct: 205 EETLAKAENGFEIVAREDTSGEFQKSLEAAQKILSENSDIVAIMCGNDQMAVGA-KTAMN 263 Query: 242 QNQAGKIAVFGSDMTTEIAQELE--NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + G+I ++G D + +I +EL+ NQ+ V S MG L ++N + D E Sbjct: 264 VAEQGQILIYGVDGSPDIKKELKKTENQIAGTVAQ-SPISMGKDAANTVLNILNGK-DYE 321 Query: 300 KVIQ 303 K I+ Sbjct: 322 KEIK 325 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 15/173 (8%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 QL+ T+A SK+ + + ++A++VD ++ E + V +A +AGIPVI + + Sbjct: 82 QLVMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDV 141 Query: 123 NQ---KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF---EVCV 176 +Q K Y++ ++ D ++ G + AAD+ + K K +I E Sbjct: 142 DQSVAKAGRDYIT-FIGSDFIDQGHR----AADWLV--KATGGKAKIIELEGTTGASAAN 194 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGES 228 R+KGF+E++ ++ PG I+A+Q G DK V E L+ + PD+ A+ + Sbjct: 195 DRKKGFDEII-AKNPGMTIIASQSGDFARDKGRQVMETLLQAHPDVTAVYAHN 246 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 + ++ AA+D+ ++++ ++AQ + + + +A+ VD I S V E+G +R A Sbjct: 51 ESIKSAARDAGIELKF--SDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREA 108 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN 168 A IPV+ + +N K YV+ ++ D +E G+K G + K D + + Sbjct: 109 KAAKIPVVLTDRAVNTKDTSLYVT-FMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQG 167 Query: 169 CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 + R+KGFEEV+K+ P +I+ +Q G Sbjct: 168 TVGSAPAIDRKKGFEEVVKAD-PKFKIIRSQTG 199 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 148/316 (46%), Gaps = 29/316 (9%) Query: 3 TKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQ 61 T M+T R+ + +LL + + + A K++ + + Q ++ V+ G + AAK+ + Sbjct: 40 TTMKT-RHFIYALSLL-ACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDK 97 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 + + I+++ V+ +A+ + ++L+A+ N + V A+ GI V+ +++ Sbjct: 98 TSYVGPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSG 157 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRK 180 IN +V+ +K G AAD + ++ K+ +I + ++R + Sbjct: 158 INSDIPVSFVATN--------NRKAGAQAADALASQVNNKGKVGIIAHVAGTSSAIERSE 209 Query: 181 GFEEVLKSRVPGAQIVANQEG-----TVLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 GF E +K + P +++ Q +DK I +I + PDL I G + G+TLG Sbjct: 210 GFMERMKEKYPDIKVLPVQYSDGDPQKAMDKTID----MIQANPDLAGIYGTNEGSTLGV 265 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 A+ +QN GK+ V G D T I L+N V++ V ++G Q +K +N Sbjct: 266 ANAIDSQNLKGKVKVIGFDSTEAIINFLKNG-VIQGFVVQDAYQIG----YQGIKTLNAA 320 Query: 296 ADG---EKVIQVPIDL 308 G EK I +P+ Sbjct: 321 LSGQAVEKEIDIPVKF 336 >UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8 Length = 349 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 15/274 (5%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKD------SSVQVQ 63 LLL A L ++ AR E E TI I + ++ VR+G + A D + V+V Sbjct: 8 LLLAAVLPIASGCARRGE-EYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDGTRVRVI 66 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + D ++ VD VA A++L+ + V+RA++AG+PV+ ++ ++ Sbjct: 67 FDGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVIIDSGLD 126 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGF 182 + Y+ D G+ G + D+PK+ + + R +GF Sbjct: 127 DP---NHFVKYVATDNYNGGRLAGRHLIRELQRRRKDKPKLILFRYAVGSQATEDRERGF 183 Query: 183 EEVLKSRVPGAQIVANQE--GTVLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAV 239 E+ +K R PGA+ ++ + G D A+ LI+ + ++ I + + G + Sbjct: 184 EDEVKERCPGAEWLSTDKYAGATRDSAMREAGPLILQFGNQVDGIFAPNESSASGTADVL 243 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 R Q K+A+ D + + Q ++ V+ +++ Sbjct: 244 RAQGLNQKVALMAFDGSKPLLQSIQQGDVIGSIL 277 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 130/279 (46%), Gaps = 22/279 (7%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ +++G+++ AK V V + + ++GD + + L+ +N I + +S Sbjct: 38 FWVAMKEGIENEAKALGVDVDIFASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLV 97 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKY---VSAYLVGDPLEFGKKLGNAAADYFIANKI 159 +A GI ++ + I+ K + K V A++ D + G K A FI +K+ Sbjct: 98 MPAAKAYRKGIYLVNLDEKIDIKNLQKAKGNVEAFITTDNVAVGGK-----AAQFIVDKL 152 Query: 160 DQP--KIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTVLD--KAISVGEKL 214 ++A+I +A + RR+G EV + ++VA+Q D KA+ V + Sbjct: 153 GSEGGEVAIIEGKAGNASGEARRRGAREVF-VKSSSIKLVASQPAD-WDRIKALDVATNV 210 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVD 274 + P+L A + +G +AV N + GKI V G+D E A+++ + + L A + Sbjct: 211 LSRNPNLKAFYVANDTMAMGVAQAVINAGKQGKILVVGTDGVPE-ARKMVSERKLTATIA 269 Query: 275 ISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 +G A+ LK++ A K Q+P+D+ K E Sbjct: 270 QDPAMIG----AKGLKLLVDAARAGK--QIPVDVEPKIE 302 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 122/266 (45%), Gaps = 30/266 (11%) Query: 13 LMATLLGSALFARAA--EKEMTIGAI---YLDTQGYYAGVRQGVQDAAKD-----SSVQV 62 L+A L G L A K IGA + D Y +QDA +D VQ+ Sbjct: 5 LLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTY------LQDAVRDFDEKHDDVQI 58 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 +L ++N+ +I + V + +NVDA+++ R A +AGIP+I N Sbjct: 59 KLADSNSDPNI--QVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKP 116 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI---DQPKIAVINCEAFEVCVQRR 179 N + + +YV++++ D +E G+ GN FI N + + + ++ + +R Sbjct: 117 NDEHM-QYVTSFVGSDEIEGGRIQGN-----FIVNTLAGKNAESLILLGPLGQDAVTKRT 170 Query: 180 KGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +G EE+ ++ ++V+ QEG D+ +++ E ++ +N I+ + +GA+ A Sbjct: 171 QGNEEIF-AQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKGINVIVSNNDEMAIGAILA 229 Query: 239 VRNQN-QAGKIAVFGSDMTTEIAQEL 263 R + I + G D T + + L Sbjct: 230 TRKLGIKDEDITIVGLDATPDALEYL 255 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 27/266 (10%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA--AEKEMTIGAIYLDTQG-----YYAGVRQGVQD 53 M ++ R L ATL+ A+ A A+ ++ IG +QG + + +G + Sbjct: 1 MTSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGF----SQGTMNHPWRVAMVEGNKK 56 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 A + V LI T+ D SK+ V++L+A+ + +++S ++E + V+ A +AGI Sbjct: 57 YAAEHYPDVDLIVTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGI 116 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK--IAVINCEA 171 V+ + +N V+ ++ G+ L G G F+A K++ I + Sbjct: 117 KVVTLDRKVNTP-----VTVHVGGENLPLGVGAGE-----FLAKKLNGKGNIIELQGTAG 166 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLI--ISTPDLNAIMGES 228 + R KGF E + ++ P ++VA+Q DKA+ E ++ + A+ + Sbjct: 167 ASATIDRNKGFAEAI-AKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHN 225 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSD 254 LGA++ + + ++AV G D Sbjct: 226 DEMALGAIQVLEAAGRLNEVAVVGID 251 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 19/268 (7%) Query: 13 LMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGD 72 L+ +L ++ FA AAE + + + + ++ +++G++D AK V V + + ++GD Sbjct: 12 LVGLMLSTSAFA-AAEYAVVLKTL---SNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGD 67 Query: 73 ISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY-- 130 + + L +N I + +S V RA + GI ++ + I+ + K Sbjct: 68 FQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGG 127 Query: 131 -VSAYLVGDPLEFGKKLGNAAADYFIANKI--DQPKIAVINCEAFEVCVQ-RRKGFEEVL 186 V A++ D + G K + FI +K+ + ++A+I +A + RR G E Sbjct: 128 NVEAFVTTDNVAVGAKGAS-----FIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAF 182 Query: 187 KSRVPGAQIVANQEGTVLD--KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 K + ++VA+Q D KA+ V ++ P++ AI + +G +AV N + Sbjct: 183 K-KASQIKLVASQPAD-WDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK 240 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAV 272 GK+ V G+D E + +E Q+ V Sbjct: 241 TGKVLVVGTDGIPEARKMVEAGQMTATV 268 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 76/310 (24%), Positives = 142/310 (45%), Gaps = 27/310 (8%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT--QGYYAGVRQGVQDAAKDSSVQV 62 MR + L++ L S + A+ + T+ AI L T ++ ++ G + AK+ + Sbjct: 1 MRMKKLTTLISAALLSTSVSFVAQAQDTV-AIVLSTLNNPFFVTMKDGAEAKAKE--LGY 57 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 LI ++Q D SKE + V+ L R V AI+++ + S +R A+ + IPV+ + Sbjct: 58 NLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA 117 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI--DQPKIAVINCEAFEVCVQRRK 180 ++ V ++++ V +G A +FI KI D I + +R + Sbjct: 118 SRGEVVSHIASDNV---------VGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGE 168 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF +K Q++A+Q K ++V E L+ + PD+ A+ ++ LGA++A+ Sbjct: 169 GFMNAVKGS--KMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAI 226 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 Q + + G D T + +E Q+ V + + + A ++ +K GE Sbjct: 227 --QASGKSVMIVGFDGTDDGIAAVERGQLAATVA-----QQPDMIGAIGIETADKMLKGE 279 Query: 300 KV-IQVPIDL 308 KV +P+ L Sbjct: 280 KVEAYIPVAL 289 >UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2X7_9CLOT Length = 324 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/294 (21%), Positives = 133/294 (45%), Gaps = 20/294 (6%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + +++E++IG + +A ++D K++ + +++ ++ + T V+ Sbjct: 34 KGSDEEISIGVTVMTLANTIWAETCTAIEDNCKENGWKCTVVDCSSTA--QTQITQVENF 91 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + + VDAI+++ + ++ A +AGI VI ++ I+ D L+ D G Sbjct: 92 IQKGVDAIVINPTDQAALETVMKEAMDAGIKVISWD--IDSDAAD----CCLLVDNYNVG 145 Query: 144 KKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVA--NQE 200 ++G AAD+ N + ++ +++ EA ++R G + + P +++VA + + Sbjct: 146 YEIGKQAADWIEDNLDGKAEVCILDYPEAGAEVIKRADGINDAITELSPNSKVVAQVSHQ 205 Query: 201 GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIA-VFGSDMTTEI 259 G+ D + E ++ S PD + G +GA +A++ G+ A +F +D TTE Sbjct: 206 GST-DGGMQAMENVLQSNPDCRVVCSVGDGGAMGANEALKAAGIKGEEAGIFSADGTTEF 264 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 ++ + K + + A TL + K EK DLYT + Sbjct: 265 LSKIAAGEPCKMSILLDDPLSKAASITDTLDKLLKDEKVEK------DLYTNVQ 312 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 22/220 (10%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ V+ G + AAKD V+V + + K+ + +A+ AI +A+ + Sbjct: 41 FWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAALAKKPQAIGFAALDSQAAI 100 Query: 103 RTVRRASEAGIPVICYNTCINQK------GVDKYVSAYLVGDPL-EFGKKLGNAAADYFI 155 +++A A IPV+ +++ ++ D +A L D + E K G A Sbjct: 101 PLLKKAQAAKIPVVAFDSGVDSDIPVTTTTTDNKAAAALAADKMAEMIGKSGEVAL---- 156 Query: 156 ANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKL 214 V++ + V RR GF +KS P +IV+ Q G K+ + + + Sbjct: 157 ----------VVHDQTSRTGVDRRDGFVNRIKSAYPNIKIVSVQYGGGDQLKSTEITKSI 206 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 + ++P+L I G + G+ +G V V+ ++GK+ + G D Sbjct: 207 LQASPNLKGIFGANEGSAIGVVNGVKEMKRSGKVVIIGYD 246 >UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J484_9BACL Length = 329 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 11/238 (4%) Query: 38 LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVS 97 +D Y+ + G + AAK+ +V++ + + D+ + ++ + R DAIIL+A Sbjct: 48 MDRGDYWKTTKLGAEVAAKEFNVRLNFVAPENENDVEGQIRLMEEAIERRPDAIILAASD 107 Query: 98 ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN 157 + R S IPVI ++ + V +V + E G+K AA+ + Sbjct: 108 YEALGQVTDRTSYYDIPVISMDSEVASTKVKTFVGT----NNYEAGQK----AAERLVDL 159 Query: 158 KIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLI 215 +I +IN + QR +GF + + +R P +V Q G+ A + ++ Sbjct: 160 TGPVSEIGIINFVKGARNANQREEGFLDYV-ARFPDVHVVDIQYCGSDEYLAYKLTADML 218 Query: 216 ISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 P+LN I+ S +++GA +AV GK+ + D E+ + L+ +V VV Sbjct: 219 KRFPNLNGIVSLSAESSIGAGRAVDELGYGGKVKMIAFDNPPEMLELLQEEKVQAMVV 276 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 29/234 (12%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 + AG + V+DAAK V+ +LI TNA + S++ V+ ++ + A+I++ + G Sbjct: 70 FRAGETKSVRDAAKAFHVR-RLIYTNAHSNQSRQVADVENMINQGAQALIIAPLDSTGLQ 128 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 +A+ IP++ +D+ + D L F LG+ YF +ID Sbjct: 129 PAFAQAAAKHIPILT---------LDRRTAGSKCSDYLSF---LGSNF--YFKQGEIDAR 174 Query: 163 KIA-----------VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK-AISV 210 ++A + V V R KGF LK+ PG +IV Q G A V Sbjct: 175 ELAKATGGHAMVAEIQGAYGNSVEVARTKGFAAGLKA-YPGMKIVTEQTGNWFTTDAQKV 233 Query: 211 GEKLIISTPDLNAIMGESGGATLGAVKAVRNQ-NQAGKIAVFGSDMTTEIAQEL 263 +++++ P++NA+ ++ GA+ A+R+ + G++ + D T + Q++ Sbjct: 234 MSQILLAHPNVNAVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTRQGVQDI 287 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 21/289 (7%) Query: 5 MRTTRNLLLMAT----LLGSALF-ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSS 59 M T+ LL AT LLG+AL A A K I AI Y + DAAK Sbjct: 1 MNMTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWA---DAAKSHP 57 Query: 60 V----QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 L + + D+ +S DT + DAII V + + + RA AGIPV Sbjct: 58 ALADGTATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPV 117 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVC 175 NT +++ + AY+ + +E G+ L A D A K D + + Sbjct: 118 FGSNTVVSKT---ELYDAYINSNDVEAGEMLAKAVIDK--AGK-DAKVVVLEGMLGQSAQ 171 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPD-LNAIMGESGGATLG 234 VQR +G VLK + N +AI++ E + S D + ++ E+ +G Sbjct: 172 VQRLEGINNVLKQNSGVTILEQNTANWSRAEAITLMENFLTSHGDQVQGVLAENDEMAVG 231 Query: 235 AVKAVRNQN-QAGKIAVFGSDMTTEIAQELEN-NQVLKAVVDISGKKMG 281 A++ +RN K+ V G D + + ++ Q + + D SG+ G Sbjct: 232 AIEGIRNHGLDPKKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQG 280 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 27/240 (11%) Query: 31 MTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 +TIG I Y++ V QGV+ A K V + + DI+ + +++ +A VD Sbjct: 20 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKE-DINAQLQMLESFIAEGVDG 78 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQK------GVDKYVSAYLVGDPLEFGK 144 I ++ T+++A E GIPVI +T G D Y + Y G L + Sbjct: 79 IAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSGRYVYIGTDNYQAGYTAG--LIMKE 136 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEV--CVQRRKGFEEVL-KSRVPGAQIVANQEG 201 LG VI + +QR +GF++ + S + I+ ++E Sbjct: 137 LLGGKGK-------------VVIGTGSLTAMNSLQRIQGFKDAIADSEIEIVDILNDEED 183 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 +A+S+ E + + PDL+A G V+N + GK+ + D T +I Q Sbjct: 184 GA--RAVSLAEAALNAHPDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFDTTPDILQ 241 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 28/231 (12%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ G++ GV+ AK+ L++TNA GD ++ L+++ V A++L+ + Sbjct: 81 FFVGLKAGVEKGAKEQGFD--LVQTNANGDAQQQVNDAINLLSQGVTALVLNPIDSKAII 138 Query: 103 RTVRRASEAGIPVICYNTCINQKGVD-KYVSAYLVGDPLEFGKKLGNAAADYFI------ 155 V +A+ IPV + +G D V++++ D + G+ AD Sbjct: 139 PAVEKANAMNIPVFTLD-----RGSDGGKVTSFVASDNVALGQTAAKWIADQLTKRYGSA 193 Query: 156 -ANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEK 213 N +D +I R KGF + + ++ P ++VA QEG +K+++ Sbjct: 194 KGNVVD-----LIGLVGTTAATDREKGFSDEI-AKYPDIKVVARQEGAFDQEKSLNAMTN 247 Query: 214 LIISTPDLNAIMGESGGATLGAVKAVRNQ------NQAGKIAVFGSDMTTE 258 ++ P ++A+ G + T+GA KA+ N + I V G+D T + Sbjct: 248 ILQKYPQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGTAQ 298 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 118/278 (42%), Gaps = 29/278 (10%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ VR G Q A D + T D+ + V+ + R V AI++S V+ +G Sbjct: 76 YWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVKLVEDFIQRGVSAIVISPVNPDGMV 135 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ- 161 +++A +AGIPVI + +N VS + AA F A K+ + Sbjct: 136 PVLQQAEDAGIPVIIMDGKLNADFPRSTVST-------------NDEAAGKFAAEKLKEL 182 Query: 162 -----PKIAVINCEAFEVCVQ---RRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGE 212 A+++ A VQ R KGF + L + P +I+ G ++ ++ + Sbjct: 183 AGDAGGTFAIVS--AVPGAVQEGGREKGFSDELGT-YPNYKIIGTYYGKGDRNQTYNITQ 239 Query: 213 KLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 ++ S PD+ + G++ G VR + KI V D +TE+ + + V AV Sbjct: 240 DILTSNPDITGFYTVNEGSSAGVTLGVREGDLKEKIFV-AFDPSTEVLDAIRDGYVDGAV 298 Query: 273 VDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 + +G +KV+N + EK I VP+ T Sbjct: 299 AQ-NPYLIGRTAVLNAIKVLNGET-VEKKIDVPVTWVT 334 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 16/252 (6%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V LI +A+GD++K+ +TL+A+ VDA+I+ GS+ V A+EA IP+I N Sbjct: 67 VDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPIIICNGD 126 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVC-VQRRK 180 I DK +A++ E G+ LG +F N +I +I + V R Sbjct: 127 I----ADKNYTAFVGCTDQESGEILGT----WFNDNVEHGSQICIIEGPMGQSGQVGRYA 178 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKA 238 GFEEV + ++++ Q D+A+++ E + + D L AI+ E+ +GA+ A Sbjct: 179 GFEEV--GMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGDKLKAIVCENDDMAMGALSA 236 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + + + G D + Q +++ ++ +V+ S + G L++IN + D Sbjct: 237 CKAAGRT-DVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQ-GEGAVEVALQIINGE-DY 293 Query: 299 EKVIQVPIDLYT 310 +K ++P T Sbjct: 294 QKDTRIPFHAIT 305 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 122/258 (47%), Gaps = 33/258 (12%) Query: 14 MATLLGSALFARAAEKEMTIGAIYLDTQG---------YYAGVRQGVQDAAKDSSVQVQL 64 +ATL+ +AL +++GA DT ++ ++ G + AK+ + L Sbjct: 4 LATLISAALLTST----VSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKE--LGYNL 57 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 I ++Q D SKE + V+ L R V AI+++ + S +R A+ + IPV+ + ++ Sbjct: 58 IVLDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASR 117 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF---EVCVQRRKG 181 V ++++ D + G+ GN FI K+ + K VI E +R +G Sbjct: 118 GDVVSHIAS----DNVVGGEMAGN-----FIVEKVGE-KAKVIQLEGIAGTSAARERGEG 167 Query: 182 FEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 F +K +++A+Q K ++V E L+ + PD+ A+ ++ LGA++A+ Sbjct: 168 FMNAVKGS--HMELLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAI- 224 Query: 241 NQNQAGKIAVFGSDMTTE 258 Q ++ + G D T + Sbjct: 225 -QASGKEVMIVGFDGTDD 241 >UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EI71_9FIRM Length = 357 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 135/283 (47%), Gaps = 21/283 (7%) Query: 26 AAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 A+E IG I T +Y VRQG +DAA + + TN+ D + + V+ ++ Sbjct: 62 ASEATKVIGVIPKSTLFDFYKMVRQGAEDAAAEHGYTINYQGTNSSTDTATQQNIVEDMM 121 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 +DA+++S++ + T+ + IPVI ++ +N VS Sbjct: 122 MSGIDALVISSIDAKAINDTM---ASLDIPVITFDDEMNPSVCLTTVS---------VNH 169 Query: 145 KLGNAAADYFIANKI-DQPKIAVINCEA-FEVCVQRRKGFEEVLKSRVPGAQIVA--NQE 200 + AA +IA K+ D K+AV++ EA +V QR +GFE LK G ++V + E Sbjct: 170 EAAAAAGAAYIAEKLPDGGKVAVVSAEAGTDVIQQRDRGFENELKKH-DGFELVGVYHTE 228 Query: 201 GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 G +KA + + L+ PDL A+ + GA+ G K ++++ + +AV G D + E+ Sbjct: 229 GD-REKAANTMQDLLSEHPDLVAVFCCNEGASAGVSKILKDEGRTDILAV-GYDSSEELI 286 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 + + L A++ + +G ++ I+ ++D V + Sbjct: 287 NNIYDGS-LDALISQNPYGLGYNSVTAAIEAIDGKSDFPDVTE 328 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 111/229 (48%), Gaps = 14/229 (6%) Query: 39 DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSE 98 ++ ++ G+ +G + A++ +++++ ++++ D ++ ++ + +N DA +++ S Sbjct: 56 ESNDFWTGLIEGAKLGAEEFGCEIEVVGSDSEDDYEGQNRLIEESIKKNPDAFLIAPCSY 115 Query: 99 NGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK 158 ++ V+ A AGI VI ++ I+++ + V+ D + GK+LG A Sbjct: 116 THTTEAVQEAINAGIKVILVDSVIDKEIANGVVAT----DNFKAGKELGT------FAKT 165 Query: 159 IDQP--KIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLI 215 I +P KI V+ + + +R G E L Q + + D A + EK++ Sbjct: 166 ILKPDSKIGVVAHVKGSSTATEREDGIREGLGEDQNRIQDIVYCNSS-YDLASDLTEKML 224 Query: 216 ISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 P+++ ++G + + +GA + V+ ++ V G D + E Q LE Sbjct: 225 KERPEIDVVIGTNEYSAVGAARGVKKMGMEDQVKVVGFDNSVEQIQLLE 273 >UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia phymatum STM815 RepID=B2JTD1_BURP8 Length = 322 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 13/254 (5%) Query: 5 MRTTRNLLLMATLLGSALFAR--AAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQV 62 M+ L + L G+ F AA KE+T+G + Q Y V A + V Sbjct: 1 MKKCFKKLGLIGLAGAMAFMTDVAAAKEITLGYVAAGMQ-YPFNVAAARGFEAAAKAAGV 59 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 + I +A+ + K+ VD L+A+ VD I + + + V RA+ IP + T I Sbjct: 60 KTIVLDAKTSVEKQGNAVDDLIAQKVDGIAVLPIDAVVAQSWVERATSHNIPFVAVATQI 119 Query: 123 N--QKGV--DKY--VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVC 175 QK D Y ++A + D + G AA ++ KIA++ + Sbjct: 120 GDPQKHAINDVYPKLTALVASDEVHVGTDAAQIAAKLLPKDR--TAKIAIVEGAPGYPTV 177 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLG 234 Q KGF+E L QIVA+Q +K SV + ++++ PD++ I ++ +G Sbjct: 178 WQVTKGFKEGLDKAGVKYQIVASQPTDWTPEKGESVCQNILVAHPDVDLIFNQADDMVIG 237 Query: 235 AVKAVRNQNQAGKI 248 +AVR K+ Sbjct: 238 CARAVRAAGSHAKL 251 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 17/210 (8%) Query: 40 TQGYYAGVRQGVQDAAK----DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSA 95 T G+ + Q +D AK D ++ + T + S + V+ L+A+ VDAI++ Sbjct: 38 THGWMGALIQNAEDQAKALVEDGTIDDYIFTT--ADNPSAQVNNVEDLIAQGVDAIVMLP 95 Query: 96 VSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFI 155 + + S + EAGIP++ ++++ + + + GD +G G A +YF+ Sbjct: 96 IESDALSPIALQVEEAGIPLV----IVDRELTNDAATVVVKGD--NYGA--GVNAGEYFM 147 Query: 156 ANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKL 214 K+ I + V QR GF E ++ +IVA+Q G + ++ V E + Sbjct: 148 EQLGGNGKVVEIAGPSNSVTQQRSDGFREAIEGS--DIEIVASQSGEFSTETSLQVMENI 205 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 + S P+++A+ + G LG ++A+ N+ Sbjct: 206 LTSQPEIDAVYTQDDGMALGVLQAINEANR 235 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 20/232 (8%) Query: 29 KEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 K++ +GA L Q + V + A+ + ++ LI +A+ K+ V++ +A+ Sbjct: 37 KKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIE--LITVDAERSALKQVEQVESFIAQK 94 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VDAII++ SS V +A A IP+I N+ + K SA++ D +E + Sbjct: 95 VDAIIMNPCEVEASSPAVAKALAAKIPIINVNSETSSKP-----SAFVGSDDVESAR--- 146 Query: 148 NAAADYFIANKIDQPKIAVINCEAF---EVCVQRRKGFEEVLKSRVPGAQIVANQEGTV- 203 A FIA+K+ K V+ + ++R +G E+LK + P +++A+Q G Sbjct: 147 --IAMKFIADKLG-GKGNVVMMHGYMGQAAQIKREQGAREILK-QYPNLKLLAHQTGEWD 202 Query: 204 LDKAISVGEKLIIST-PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 KA+S+ E I S +NA+ + LGAVKA+ + K+ V D Sbjct: 203 RAKAMSLMENWIQSYGSQINAVFAHNDEMGLGAVKALTDAGLKDKVIVVSID 254 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 11/270 (4%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ +++ + AK+ + V+++ + D+ + ++ +VA+ D II++ + Sbjct: 63 YWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKKYDGIIVTPMDPFNLI 122 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + +A E GIPV+C +++ G+ K A + G K G A+ Sbjct: 123 PGIVKADEKGIPVVCSGPEVSRDGL-KQAGAVMDGWITATFKDQGRLCAEDMAEKLPSGS 181 Query: 163 KIAVINCEAFEVCVQ---RRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIST 218 ++A+I E Q RR+G E + G ++VA + G ++A + L+ + Sbjct: 182 EVAII--EGIPGAGQSKARREGASEGFEKA--GLKLVAVEAGNWDRNRAYDITTNLVKAH 237 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK 278 P L I + L AV A+ G + V+G+D E A+ +++ + L S Sbjct: 238 PQLKGIYCANDVMALAAVDALEVAGIEG-VTVYGTDFIPEAAEAIKSGR-LAGSTTFSQA 295 Query: 279 KMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 TLK+I K D + + VPI L Sbjct: 296 AWTRGTLVYTLKLIKKDEDLPEKLSVPITL 325 >UniRef50_C2BT70 Ribose ABC superfamily ATP binding cassette transporter, ribose-binding protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BT70_9ACTO Length = 333 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 138/309 (44%), Gaps = 39/309 (12%) Query: 19 GSALFARAAEKEMTIGAIYLDTQ--GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKE 76 G+A A + + A+ L Q YY +++G +D + +V++ N D + + Sbjct: 38 GAASIPEACKGDNPYLAVLLPNQTNPYYVAMKEGFEDEGSKNGFKVEVQIAN--DDDANQ 95 Query: 77 STFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ---KGVDKYVSA 133 ++ +N A+ L+ V ++ V+ A++ G+PV N + K V Sbjct: 96 LAQAQAMLGKNPCALALNPVKSEPAAAIVKAANDKGVPVFTVNISADPDALKAQGASVVQ 155 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQP-------KIAVINCEAFEVCVQRRKGFEEVL 186 YL D NAA +A +I + +I + V V+R +GF++ + Sbjct: 156 YLGAD---------NAAGGAQMAEQIMKDLGADTAMEIGFVTEPDEVVVVERDEGFKKAI 206 Query: 187 KSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 ++ P A++VA +G V L A++V +++ P ++ I +G A GAV+AV+ + Sbjct: 207 -AKNPNAKVVAEVDGNVKLTDALNVTSEMLQGHPGISVIFASTGPAAQGAVEAVKASGK- 264 Query: 246 GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV---I 302 I V+G A E++ N A V + G +T++ I G+KV I Sbjct: 265 -DIKVYGF-----CASEMQTNDAYPACVAQEPEDYGR----RTVQQIKTYIGGDKVEDNI 314 Query: 303 QVPIDLYTK 311 P+ L+TK Sbjct: 315 LRPLKLFTK 323 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V+ I +A G+++++ V L+ + VDAIIL + + VR+A + GIPVI N+ Sbjct: 57 VEGIVLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSN 116 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRK 180 I++KG ++++A+ + + G AA+ + ++ I + ++ + R+K Sbjct: 117 ISEKG-QEFITAFSGPNTI----TQGQYAAELMCEGLNGKGQVVQITGQPGYQTAINRQK 171 Query: 181 GFEEVLKSRVPGAQIVANQEG 201 GFE+ L + PG I+ +Q G Sbjct: 172 GFEDSLAADCPGVSIIDSQPG 192 >UniRef50_B0MFL8 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFL8_9FIRM Length = 312 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 18/197 (9%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ V G++ AA D V+V ++ + + D + + +L+ +++DA+ +S ++ + + Sbjct: 55 YWMSVCSGMEKAASDLGVKVIIMSPDTETDEKTQQQMIGSLLKKDIDALAVSPINSHNAK 114 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 +++A E GI V+ Y+T I +KGV Y+ D +K+G A Y A + Sbjct: 115 GYLKKAEEKGIQVVSYDTKILEKGV-----PYIGID----NEKVGRELAQYMAAQMKKKG 165 Query: 163 KIAVINCEAFEVC-VQRRKGFEEVLKSRVPGAQIVANQEG----TVLDKAISVGEKLIIS 217 + +I+ + R KGF + + +I + G + +K IS +L+ Sbjct: 166 LVGIISGNLKQSSHASRLKGFRDYIDKNT-DIKIAFTESGYSNLRMPEKEIS---RLMRE 221 Query: 218 TPDLNAIMGESGGATLG 234 PDLN I S LG Sbjct: 222 HPDLNGIFATSAVTALG 238 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 13/226 (5%) Query: 33 IGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92 I A + D + ++ + AK + + V+ ++ A+GD + + ++ ++ AI+ Sbjct: 72 IYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLD--AKGDSNLQIDQLNEAISNKAAAIV 129 Query: 93 LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152 L A+ TV +A EAGIPV+ N +N V +S D E G+ G A Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSLS-----DDREAGRMQGEFMAS 184 Query: 153 YFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVG 211 + N K+ + E + V V+R +GF+E + P +++A+ +G+ Sbjct: 185 HLPPN----AKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKA 240 Query: 212 EKLIIS-TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 L +S P++N ++ + LGA++A++ N+ V G D T Sbjct: 241 MTLWLSFFPEINGVVAANDEMALGAIQALKAANRLNGCLVTGVDAT 286 >UniRef50_C5ESA7 Predicted protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESA7_9FIRM Length = 328 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 15/196 (7%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 + +GD E T ++ L+ + VD II +A+ +G++ V++A EAGIP++ Y+ C+ G Sbjct: 74 DPKGDWGSEYTIIENLITQQVDGIIYTAIDADGANDIVKKAQEAGIPMVGYD-CLASAGT 132 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVL 186 + Y D + G+ A + K KI V + + R GF E L Sbjct: 133 EDAAVRY---DDYKGGQMAAEQAMEALEGKK--DAKIVVFEDDPSIASSTLRVNGFVEFL 187 Query: 187 KSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIM---GESGGATLGAVKAVRNQ 242 P ++V N+ + D +I + P+ +AI E AT A++ N Sbjct: 188 AENYPDVEVVLNRTQDKTSDGCYIWATDMITAHPETDAIFCYWAECAMATYNALQDAGNT 247 Query: 243 NQAGKIAVFGSDMTTE 258 + + G D T E Sbjct: 248 ----RTKIIGYDATEE 259 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 126/249 (50%), Gaps = 17/249 (6%) Query: 11 LLLMATLLGSALFARAAEK-EMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 L + LL S+ +A A+ + +TI + + Y VR G+++AA+ +VQ+Q +A Sbjct: 6 LFIAVLLLVSSQWAAASYRIGVTIARVDDNFMTY---VRSGLEEAARKENVQLQF--EDA 60 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 QGD+ ++ V +++ VDA+I+ V + ++ R A EA +P++ N +++ + K Sbjct: 61 QGDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPK 120 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKI-DQPKIAVINCEAFEVCVQ-RRKGFEEVLK 187 V+ D +E G+ ++A K+ + IA+I + + R +G ++VLK Sbjct: 121 GVTTVASND-IEAGQLQMR-----YLAEKMGGKGTIALIMGDLAQNSTHDRSEGVKQVLK 174 Query: 188 SRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA- 245 PG IV Q +K + + +++ +AI+ + +GA A++ +A Sbjct: 175 D-YPGITIVEQQTAEWQRNKGMDLTSNWLLAGRTFDAIVANNDEMAIGAAMALQQAGKAK 233 Query: 246 GKIAVFGSD 254 G++A+ G D Sbjct: 234 GEVAIVGID 242 >UniRef50_C9Z0E6 Putative bifunctional carbohydrate binding and transport protein n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z0E6_STRSW Length = 418 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 17/253 (6%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 ++L+ T+ + +++ ++ VAR AI+ + + + A +AG+ + Y Sbjct: 160 IKLLTTSDASNPDTQASNLNAWVARKTQAIVSFPMVFEATEAIAKAALDAGLIWVTYGGT 219 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKG 181 + + D S E G LG +AA + + K+A + ++ +R KG Sbjct: 220 LESQSADIRFSFR------ESGTLLGESAAKWAAEALNGKGKVAFLVDNTIDLGRERTKG 273 Query: 182 FEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + PG +VA ++ D +S L+ PDLN ++G + A G KA++ Sbjct: 274 MIDAFTKLAPGVDVVAQEQAIDPDTGLSKSTALLAKHPDLNIVLGVTDAAAYGGFKALQ- 332 Query: 242 QNQAG------KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 QAG K V G D + ++ +A ++ + NA+ L V + Sbjct: 333 --QAGRKKGDRKTFVGGQDGSAPSLLAIKQGTFYRASAALAPLDISNAIVEVPLAVAAGK 390 Query: 296 ADGEKVIQVPIDL 308 AD + VP+ L Sbjct: 391 AD--PSVDVPVKL 401 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 133/307 (43%), Gaps = 30/307 (9%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQG---VQDAAKDSSVQVQL 64 RNLL A L S + AA+K TI I T Y+ + G Q ++ ++V L Sbjct: 6 RNLLTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDL 65 Query: 65 IETNA--QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 I + D ++ V+ + R V ++L+ + V A A IPV+ +++ + Sbjct: 66 IWKGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSAL 125 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK--IDQPKIAVINCEAFEVCVQRRK 180 DKYVS ++ D + G +L + K + + AV + E R Sbjct: 126 K---TDKYVS-FVATDNYK-GGQLAAERMGQLLEGKGNVILLRYAVGSASTEE----REA 176 Query: 181 GFEEVLKSRVPGAQIVANQE--GTVLDKAISVGEKLIIST-PDLNAIMGESGGATLGAVK 237 GF + LKS+ P +++++ + G + A + L+ ++N I T+ K Sbjct: 177 GFMDTLKSKFPNIKVISSDQHAGATRETAYQASQNLLNRFGHEVNGIFCPCEPPTVAMAK 236 Query: 238 AVRNQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN--K 294 A+R+ +A GK+ + G D ++ +L+N D+ G + N + L VI + Sbjct: 237 ALRDIGKAGGKVKMVGFDAGSQSVIDLKNG-------DVQGLVVQNPLRMGYLGVITMVQ 289 Query: 295 QADGEKV 301 GEKV Sbjct: 290 HLQGEKV 296 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 71/315 (22%), Positives = 135/315 (42%), Gaps = 32/315 (10%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQ 63 M+ + +A L SA F A+ E + A L + +Y + G+++ AK + ++ Sbjct: 1 MKNLKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLK 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + A D++K+ ++ + +NVDAI++S V G +++A A IPVI + Sbjct: 61 V--SVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAE 118 Query: 124 QKGVDKYVSAYLVGDPLEFG----KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR 179 + +++ G + G K+LG ++ +++ R Sbjct: 119 NSKIVSHIATDNYGGGVVAGKLAVKQLGGKG------------QVVMLSYPGISSVEARL 166 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 +GF + + +IVA Q G +++++ ++ + PD + I +GA AV Sbjct: 167 QGFRDAVADT--DIKIVAVQPGKTREESMTSTINMLQANPDTDLIFAFGDDMMIGAGLAV 224 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 Q K V G D E + ++ N + VV MG +KV+ +G+ Sbjct: 225 TKQKS--KAVVIGFDGMPEGIKAVDENDHIIGVVKQDADAMGKT----AMKVVADYLNGK 278 Query: 300 KVIQ----VPIDLYT 310 +V VP+ LYT Sbjct: 279 EVKSEYPIVPV-LYT 292 >UniRef50_A8F7U7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F7U7_THELT Length = 348 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 31/233 (13%) Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 ++ G Q A++ + V L+E A GD+++ T ++ + + VDAII+ + Sbjct: 47 SFFERYLAGAQSMARE--LGVTLLEATAHGDMARMVTMIENFITQRVDAIIIDHGRPDPL 104 Query: 102 SRTVRRASEAGIPVICYNTCINQKGV-----DKYVSAYLVGDPL--EFGKKLGNAAADYF 154 ++ A + GI V+ ++ ++ V D + YL+ L +F GNA Y Sbjct: 105 MPKIKEALDRGIRVVTFDLVVDDNRVPEIEQDDLLIGYLISKQLAVDFA---GNANVIY- 160 Query: 155 IANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPG----AQIVANQEGTVLDKAISV 210 +N F +R K + +++K R PG A+I A T D + Sbjct: 161 ------------VNVGGFAPLDKRDKMW-QIIKWRFPGIKEVAKIGAVTGSTAADTQTRM 207 Query: 211 GEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 E + P+ NA++ GAV+A+ ++ + V+ D+TTE Q + Sbjct: 208 -EAAMKEKPEANAVLAMWDEFAKGAVRAIMQAGKSDQFKVYSVDVTTEDIQMM 259 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 27/321 (8%) Query: 12 LLMATLLGSALFARAAEKEMT-IGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNA 69 LL+A S L A+ E+ IG + Q ++ ++ GV+ A++ ++V +++ A Sbjct: 6 LLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVVD--A 63 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 + D + + + V L+ +++DA I ++ R A EAGIPVI VD+ Sbjct: 64 KNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVI---------NVDR 114 Query: 130 YVSAYLVGDPLEFGKKLGNAAA--DYFIANKIDQPKIAVINCEAFEVC-VQRRKGFEEVL 186 V GD G+ + +A A + I K+A+I+ + V R G + + Sbjct: 115 -VPEGAPGDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKRAI 173 Query: 187 KSRVPGAQIVANQEGTVL--DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 G +++ Q + D+ S+ + ++ + PD+ I G++ G +GA KAV N Sbjct: 174 DEN-KGVELIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANL 232 Query: 245 AGKIAVFGSDMTTEIAQELENNQ-VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV-- 301 + K+ + G D + L + A S +KMG L V A GEKV Sbjct: 233 SDKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAV----AAGEKVEE 288 Query: 302 IQVPIDLYTKTEDGKQWLATH 322 Q P + T ++ +++ H Sbjct: 289 RQTPNAVLTTCDNAPEFVKNH 309 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 111/232 (47%), Gaps = 5/232 (2%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ ++ ++AA+D +++++ E +A+ D + ++T+V DAIILS + Sbjct: 103 FWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDAIILSPIDGTNLI 162 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + A+EA IPVI ++ + + +L G ++ G+ A+ I+ D Sbjct: 163 PGIVAANEAEIPVINLGPGVDAEALAD-AGGHLDGKITVNFEEQGSTVANDMISRMEDGG 221 Query: 163 KIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD 220 K+A++ E V R G + V ++ G ++VA Q +KA + ++ + PD Sbjct: 222 KVAILAGLEGAGQSVGRTNGAKTVFEN-TEGVELVAAQACDWDTEKAYEATKDILTAHPD 280 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 L I + L AV+A++ + V+G D TT+ +E+ ++ ++ Sbjct: 281 LKGIFACNDNMALAAVQALQEMGNK-DVMVYGVDYTTDAKAAIEDGTMMGSM 331 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 127/288 (44%), Gaps = 11/288 (3%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 AR GA Y+ T + + + +S+ + L+ +A D +K+ + Sbjct: 37 ARQIGSRKKFGATYMTTNNRFYEIINDEIRSVVESNGDI-LVTRDAALDKNKQMQQIYEF 95 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + V AI ++ V + A AGIPVI +T + DK V+ ++ D + G Sbjct: 96 IKLKVKAIFINPVDWKQIKPALIAAKNAGIPVIVVDTPVYD---DKLVACTVISDNYDAG 152 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 + A Y + +K + I +I + + R KGF + + + + A Sbjct: 153 VQ----CAKYLMKSK-SKANIMLIEHSKAKSGIDRIKGFVDTIGASKQYKIVAAGDSEGQ 207 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 LDK +S+ + LI +++AIM + + LGA+ A++ GK+ VFG D + E A+ + Sbjct: 208 LDKTMSLVDDLIKKHTNVDAIMALNDPSALGALAALKENGLLGKVMVFGVDGSPE-AKTM 266 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 ++ + A K+G+ + ++ + VI VPI L +K Sbjct: 267 IHDGFMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDVI-VPISLISK 313 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 75/324 (23%), Positives = 144/324 (44%), Gaps = 15/324 (4%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA--RAAEKEMTIGAIYLDTQG----YYAGVRQGVQDA 54 M +M ++ L+ ++G A A++ + I L QG Y A + + A Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 KD +++V L+ + D ++++ + ++ D I++S V + V A +AGI Sbjct: 61 EKDLNIKVNLV--DGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIE 118 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP-KIAVIN-CEAF 172 V T I + V VG ++G A D A +D+ KIA+I Sbjct: 119 VCALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMD-IAAEALDRSGKIAIIEGTPGM 177 Query: 173 EVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGA 231 R+KG +E K P ++V+ G V+DKA + + +I S P++ ++ S Sbjct: 178 SDTEGRKKGIDEENK-EYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEVELVICHSDNM 236 Query: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 +GA KA+ + + K+ + G + + ++ ++ ++ + + A+ A T KV Sbjct: 237 AVGAAKALEDADMTDKVKIVGIGGSKDALDLIKKGEIYGTIMYVPETEAYTALEA-TAKV 295 Query: 292 INKQADGEKVIQV-PIDLYTKTED 314 + +A+ E V + L+ +T D Sbjct: 296 VRGEAEKETFYNVQDLPLFAETGD 319 >UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=B5WJX6_9BURK Length = 338 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 7/213 (3%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ V GV++ AK+ + + +E ++ +K+ V T + R V AI++ VS + Sbjct: 54 YWQWVAYGVRERAKE--LGMNYVEFTSENSPAKQMDNVKTALTRGVSAIVMGPVSSTSTP 111 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 +R E +P I + Q G Y SA + + + GK G+ +A + Sbjct: 112 PVLRLLKEKSVP-IAFAGIGPQAGQTDYTSA-VTANNYDTGKAQGSYVCK--LAKERGGN 167 Query: 163 KIAVINCEAFEVCVQRR-KGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDL 221 KIA+++ V Q+ KG +E + V G +++A+S ++ + PD+ Sbjct: 168 KIAMLSLPQDRVNAQKYMKGAKESFAADGCDLVQVLETHGLTVNEAVSQANDILTAHPDV 227 Query: 222 NAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 AI G A G+ KA++ + GK+AV +D Sbjct: 228 KAIYGMYDEAATGSAKALQTRGLTGKVAVVTAD 260 >UniRef50_B0NGB0 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGB0_EUBSP Length = 340 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 126/269 (46%), Gaps = 24/269 (8%) Query: 43 YYAGVRQGVQDAAKDS--SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 Y+AGV ++D K+ +Q N+ IS+ V+ + D I++ + Sbjct: 56 YWAGVMGKLEDLLKEKGWDYTLQDCTNNSATQISQ----VENFITSGCDLIMVHPSDADA 111 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI- 159 + A +AGI V+C++ + +A + D G ++G AA + + Sbjct: 112 LETVCQEALDAGIKVMCWDDPMEN------TTANWILDNTALGNEIGKTAAAFINEHYTA 165 Query: 160 DQP-KIAVINCEAFEVCVQRRKGFEEVLKSRVPGA--QIVANQEGTVLDKAISVGEKLII 216 D+P ++ VI + +V ++R G +E L+ +IVA +G ++A S E ++ Sbjct: 166 DKPAEVCVIGKPSTKVLLERANGIKEGLEKNCDKGNYEIVAEVDGLEANEAQSNVETVLQ 225 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQ-NQAGKIAVFGSDMTTEIA-QELEN----NQVLK 270 + PD + +G GA +G+ +A+ + AGKI +TT++ Q+LE+ ++ ++ Sbjct: 226 AHPDCSVFVGVGAGAMIGSNEALLQKFGGAGKIPENVGVITTDVTPQQLESLKAGDEAVR 285 Query: 271 AVVDISGKKMGNAVFAQTLKVINKQADGE 299 A++ G + A +K+ + DGE Sbjct: 286 AIIGFEGSSLDTAT--ACMKMYERILDGE 312 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 118/257 (45%), Gaps = 54/257 (21%) Query: 38 LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVS 97 LD Q Y + +QD A DS++QV IE T + + VDAI+++AVS Sbjct: 84 LDAQKEYDNIEFILQDGASDSALQVNQIE---------------TFITQGVDAILINAVS 128 Query: 98 ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG--DPLEFGKKLGNAAADYFI 155 + ++++A EAGIPV N I D+ +Y +G D L G+++ N D Sbjct: 129 -DAVEPSLKKAMEAGIPVFAVNRSI----TDENAYSYFIGANDTLS-GEQMANCLLDMIE 182 Query: 156 ANKIDQPKIAVIN---CEAFEVCVQRRKGFEEVLK-----------SRVPGAQIVANQEG 201 +++D I I ++ R+ GF+ ++ R+P + + Sbjct: 183 KDQMDSCNILYIQGVIGATYQTL--RQGGFDSIMDEKGYDMGVNILERIP----CKHDKE 236 Query: 202 TVLDKAISVGEKLIISTP--DLNAIMGESGGATLGAVKAVRNQNQA---GKIAVFGSDMT 256 TV IS + ++ P +++AI+ E +GA++AV++ + GKI G DM Sbjct: 237 TV----ISSIQNMLNKYPAGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIV--GMDMP 290 Query: 257 TEIAQELENNQVLKAVV 273 TE+ ++ ++ V+ Sbjct: 291 TEVWDAIKAGKIYGTVL 307 >UniRef50_A6M392 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Clostridium RepID=A6M392_CLOB8 Length = 341 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/323 (22%), Positives = 140/323 (43%), Gaps = 30/323 (9%) Query: 11 LLLMATLLGSALFARAAEKEMTIG--AIYL----DTQGYYAGVRQGVQDAAK--DSSVQV 62 +L++ +L G +A T G IY DT Y++ +++ +D AK + V Sbjct: 12 VLIVGSLAGCGTKTQAGGTASTSGKKVIYFIPIVDTGAYWSPMKKAAEDEAKALGYDLVV 71 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 + N K F+D + I ++ + + + V+ A++ GIPV+ ++ + Sbjct: 72 KTSPPNETQKNEKHIGFLDEAIKNKAAGIAIAPMDPDMFDKKVKEANDKGIPVVTFDADV 131 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK-- 180 K + ++Y+ D G++LG A I + KIA+ + + R+ Sbjct: 132 KTK---ENRTSYIGTDNKLAGEQLGENGAKALKEKGITKGKIAMAAVNLTQTTMTYRQDG 188 Query: 181 ---GFEEVLKSRVPGAQ----IVANQEGTVLDKAISVGEKLIISTPDLNAIMG-ESGGAT 232 GFE+V+ + + I N + + + E I S D+ A+ S G Sbjct: 189 IKSGFEKVMGADAKNFEWLEPIQDNDQSAESKRQL---EGQITSNSDMVAVFSLGSEGPD 245 Query: 233 LGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI 292 G ++A+++Q ++G I FG D T + +N ++ +VD +G + + + Sbjct: 246 TGVMEAIKSQGKSGSIYHFGFDYTPTWENGVSSN-LISGIVDQDSYAIGKTI----IDTL 300 Query: 293 NKQADGEKVIQV-PIDLYTKTED 314 +K+ GEKV V P+ + T D Sbjct: 301 DKKIKGEKVDDVYPVPVKWVTPD 323 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 20/251 (7%) Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI- 122 L+ NA+GD +++ + + LVA+ +AI++ V SS + A+++GIP+I N + Sbjct: 67 LVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIISVNNFLK 126 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKG 181 NQ +AY+ D + G A+Y + + + ++ E E ++R +G Sbjct: 127 NQDD----AAAYVGSDSITSGI----MEAEYAVKQLNGKGNVVILKGEPNHETAIKRTEG 178 Query: 182 FEEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 F++VL++ P +I+ Q G + + E I + +AI+ + +GA+ A++ Sbjct: 179 FKQVLQN-YPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILANNDEMAIGAIMALK 237 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 N + V G D T + A +L LK V + G ++ +K K GEK Sbjct: 238 ENNLINNVFVGGIDATPD-ALKLLKEGSLKVTVFQNAAGQG----SEAIKAAYKLVKGEK 292 Query: 301 V---IQVPIDL 308 + I VP +L Sbjct: 293 INKKIFVPYEL 303 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 33/227 (14%) Query: 43 YYAGVRQGVQDAAK--DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 ++ VRQG AAK + V VQ + D++ + + + + VD ++ +A Sbjct: 56 FWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQGVDGLVYAATDAKV 115 Query: 101 SSRTVRRASEAGIPVICYNTCINQK-------GVDKYVSA-----YLVGDPLEFGKKLGN 148 ++A + GI V+ ++ + + D +A YLV + G+ G Sbjct: 116 LHDVTQQALDQGITVVNIDSGTDPQPENVPVFATDNVAAAERATEYLVE---QLGEDGGK 172 Query: 149 AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKA 207 A F QP A + R +GF+ VLK P ++VA Q + ++A Sbjct: 173 VAFIPF------QPGTATNDT--------RTEGFKNVLKEN-PQVKLVAEQSSESNYNRA 217 Query: 208 ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 + V E ++ + PDL+AI + LGA +AVR+ +AG+I + G D Sbjct: 218 LQVTEDILTAHPDLDAIYAANEPGVLGAAEAVRSAGKAGEIIIVGWD 264 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 +Y + +G+++ A + V+L + D++++ ++ + V AI++ G Sbjct: 48 FYRELERGLKEEAAKQKLTVRL--DAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIG 105 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + RA++A IPV + + + V +++ D + G+ G AA Sbjct: 106 PAIARANQADIPVFTADI----RAKEGAVVSHIASDNVAGGRLAGEYAAKRLNGRG---- 157 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDL 221 ++A+I+ + ++R +GFEE LK P ++VA G V D+++ E L+ S L Sbjct: 158 QVAIIDQPYIQSVIERVRGFEEALKP-YPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKL 216 Query: 222 NAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 +A+ + + G V A+ + G I V G D + E Sbjct: 217 DAVFAVNDESAFGVVSAIEAAGRKG-IFVMGYDASEE 252 >UniRef50_C0RMD7 Rhizopine-binding protein n=23 Tax=Brucella RepID=C0RMD7_BRUMB Length = 389 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 19/247 (7%) Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L+ T+AQG+ + + +++ N+DAI++ A S + R + A E GI VI +++ ++ Sbjct: 85 LMITDAQGNAQTQIQQIQSMIDANMDAIVIDAGSSSALDRVIADACEKGIAVINFDSLVD 144 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKGF 182 + ++A + D E+G++ AA + + + KI ++N A V RRKG Sbjct: 145 TEN----LTAKINTDSAEWGER----AAQWMVDQLGGKGKIIIMNGPAGVSVSDDRRKGA 196 Query: 183 EEVLKSRVPGAQIV--ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 + VL + G +I+ N E V A L+ + P+++ ++ SG GAV A Sbjct: 197 QPVLDAN-KGIEIITETNTEYNVA-PAQEAMTSLLFANPEIDGVLSLSGAIAAGAVLAFD 254 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGN-AVFAQTLKVINKQADGE 299 Q + + + G + + EL + LKA + +G +V+A + K D Sbjct: 255 RQGR-DPVPITGENARQFL--ELWKEKGLKAWATMQPNWLGAFSVYAAVQALEGK--DIP 309 Query: 300 KVIQVPI 306 K I+VP+ Sbjct: 310 KSIKVPL 316 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 25/257 (9%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 A EKE+ I T ++ V+ G + A ++ ++ + + D ++ V Sbjct: 135 ANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFRGPSKENDRDEQINVVQG 194 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + VD I+L+ + + R V+ AS AG+PV+ +++ +N D +VS Y+ D E Sbjct: 195 FLNARVDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNTDPGD-FVS-YVATDNFEG 252 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF----EEVLKSRVPGAQIVAN 198 GK G A A+ D I + + E QR +GF E RV + A Sbjct: 253 GKLAGEAMANALGEKGGD--VILLRYEQGSESTHQREEGFLYSIAEYSNIRVLSSDQYA- 309 Query: 199 QEGTVLDKAISVGEKLIISTPDLNAIMGESGG-------ATLGAVKAVRNQNQAGKIAVF 251 GT + AI + L LN E+ G GA++A+R + AGK+ + Sbjct: 310 --GTTTESAIDKAQAL------LNRFGDEADGICTVCEPTAEGALRALRERKLAGKVKLV 361 Query: 252 GSDMTTEIAQELENNQV 268 D + + + L +V Sbjct: 362 TFDSSDSLRESLSAGEV 378 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 147/307 (47%), Gaps = 22/307 (7%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 LL++ + S +A EK++ + L+ ++ +++G + +K+ + +L+ ++Q Sbjct: 16 LLVLGFVGCSNKHTQAREKKIGMVVSTLNNP-FFVSLKEGAEKKSKE--LGYELLVLDSQ 72 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 D +KE + ++ L+ + +I++ + +V+ A++A IPVI ++++ Sbjct: 73 NDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVI----TVDRQANGGE 128 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF---EVCVQRRKGFEEVLK 187 V +++ D + K G A+ + I ++ I V+ + +R KGF ++ Sbjct: 129 VVSHIASDNI----KGGELASSFIIDELKNKKDIKVVELQGIPGASATRERGKGFHNIID 184 Query: 188 SRVPGAQIVANQEGTVLDKA--ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 + +++++Q D+A +SV E +I + D +A+ + LGA KA++ N+ Sbjct: 185 KK-SNLKLISSQAAN-FDRAQGLSVMENIIQAQSDFDAVFAHNDEMALGAAKALKTANK- 241 Query: 246 GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVP 305 KI V G D + +E +++ A V MG+ +K+ N Q + K I V Sbjct: 242 -KIIVVGFDGDEDAKTAIEKSEI-SATVAQQPALMGSTSIETAVKISNGQ-NISKNIPVK 298 Query: 306 IDLYTKT 312 + L TK Sbjct: 299 LRLITKN 305 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/215 (22%), Positives = 108/215 (50%), Gaps = 18/215 (8%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ +++ +++ ++ + LI +AQ D K+ + V+ L+ + +D + L + Sbjct: 81 FFHAIQEAIEEVVDENGDE--LIVIDAQNDAQKQISMVEDLLTQGIDLLFLCPIDSASIK 138 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 ++ + +AG+PV+ ++T + VD V+ +V D G+ + A+ + + Sbjct: 139 SSLEQCGKAGVPVVNFDTDVYD--VD-LVNTIIVSDNYYAGELV----AEDMMKKLPEGS 191 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGA-QIVANQEGTVLDKAISVG--EKLIISTP 219 K+ ++ + E C++R+ GF K + G +IV+ +G D A S+G E ++ P Sbjct: 192 KVCILTSPSAEACIKRQNGF----KDKADGYFKIVSEIDGKG-DTATSLGIAEDVLQGNP 246 Query: 220 DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 DL A + + +G V+A+ +Q + + V+G D Sbjct: 247 DLGAFYAINDPSAIGCVQALESQKKT-DVLVYGVD 280 >UniRef50_A9KMR5 Putative solute-binding component of ABC transporter n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMR5_CLOPH Length = 334 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 13/227 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y++ V+ G + A KD +V ++ T A+ DI + ++ ++ DAI+++ + Sbjct: 47 YWSVVQAGAEKAGKDLGCKVVIVGTAAESDIEGQVRYIQDAISAKADAIVVAPLDRTALK 106 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + ++G P++ ++ + +G D S L+ D +E G+ A + + Sbjct: 107 NPISEQFKSGTPIVLIDSSV--EGED--YSTALMTDNVEAGRMAAKEMIARLKAKGVAED 162 Query: 163 KIAVINCEAFEVCV----QRRKGFEEVLKSRVPGAQIVANQEGTVLD----KAISVGEKL 214 K I +A R KGF E P + V N + + D KA++ + Sbjct: 163 KEGTIAIQAGSTGSMAINDRLKGFNEYWGENAPASWKVLNDDIKINDGDISKAVAFCQDF 222 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 + + +L + G + G+T+G V + + + + G D + EI Q Sbjct: 223 LTTYTNLIGVFGPNNGSTVGFVTGLTEAKRT-DLTMIGFDFSNEIEQ 268 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 20/285 (7%) Query: 32 TIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQG-DISKESTFVDTLVARNVDA 90 TIGA+Y+ Y V A +S V +ET G D ++ V+ + VD Sbjct: 48 TIGALYMTMNNPYFEVINEEIKAVVESKGDV--LETRDSGMDAKVQAKQVEKFIEEKVDC 105 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 I+++AV ++ +A +AGIPVI + I + +V +V + + G++ A Sbjct: 106 ILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNRS---FVDGTVVSNNYQAGEQ---CA 159 Query: 151 ADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAIS 209 D K + KI + + + R KGF+E L+ + V E L+ + Sbjct: 160 KDLMKRRK--KGKILFLVQSENKSAIDRIKGFKETLEKAGWKYENVGELECQGQLELSQP 217 Query: 210 VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVL 269 + EK++ T D++ +M + + +GA+ A+ ++ + V+G+D + E + N+ + Sbjct: 218 LVEKVLNKTKDIDVVMALNDPSAMGAMAALDAEHMLSDVLVYGADGSPEAKTMIYENK-M 276 Query: 270 KAVVDISGKKMGNAVFAQTLKVINKQADG---EKVIQVPIDLYTK 311 A S + G +T++++ K DG EK VP+ L TK Sbjct: 277 AATSAQSPRTTGK----KTVEMLYKILDGKKTEKQCIVPVSLITK 317 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 26/296 (8%) Query: 30 EMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 E+ IG +I Y+ + ++ AK+ + + L ++AQ D + + V +++NV Sbjct: 48 ELNIGVSISTTNNPYFVSMNNAIKSMAKEKNTK--LTVSDAQNDSATQLNNVQNFISQNV 105 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 DAI+++ V + ++ A+ A IPVI + N V V++ D + G K+ Sbjct: 106 DAILINPVDSDAIVPAIKAANNAHIPVIAMDRGSNGGTVLTTVAS----DNVAAG-KMAA 160 Query: 149 AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK-- 206 A + + + +++ + R KGF +++ G I+++Q D+ Sbjct: 161 QAVEKLVGKNVKVLELS--GTPGASATIDRGKGFNS--EAKTLGLNILSSQSAN-FDRTT 215 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 ++ + ++ S D+ AI ++ LGA KAV+ Q KIA+FG D +E ++ Sbjct: 216 GLNTTQNMLQSHKDVQAIFAQNDEMALGAAKAVQATGQ--KIAIFGIDGESETHDAIKAG 273 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV---IQVPIDLYTKTE-DGKQW 318 + A + K+G T G+K+ I PI L K D QW Sbjct: 274 -TMTATIAQQPAKIGEMALQATYDYY----QGKKIAHMINSPIYLVDKDNVDQHQW 324 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 72 DISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV 131 DI E V+ + + VD I+L+A + V A A IP++ ++ ++ DK V Sbjct: 76 DIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLVTVDSGVDS---DK-V 131 Query: 132 SAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRV 190 ++++ D +K + AAD K+ V+N VQR KGF + + S+ Sbjct: 132 ASFIATD----NEKAASQAADVCAELIGKSGKVGVVNFVPGVSTAVQREKGFRDGM-SKH 186 Query: 191 PGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIA 249 G +++ Q + KA+++ E ++ + PD+ AI + + LG +A++ + AGK+ Sbjct: 187 SGIELLKTQYSQSDKSKAMAITEDILTANPDVKAIFAANNRSALGVAQALKGKGVAGKVK 246 Query: 250 VFGSDMTTEIAQELENNQVLKAVV 273 V D + + +E+ + +V Sbjct: 247 VVAFDADPDEIKGIEDGSITALIV 270 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/314 (21%), Positives = 127/314 (40%), Gaps = 47/314 (14%) Query: 30 EMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 ++ G + +D T ++ + +G AA+D +V I +A G+ + + ++ + + V Sbjct: 59 KIVCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEV--IWKSADGNFDNQISLIENFIEQGV 116 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVIC----------YNTCINQKGVDKYV---SAYL 135 D I++ + G + +AS AGIP I Y T N + + + +A + Sbjct: 117 DCILVDPLDSEGLKPVIEKASAAGIPTITMAGQVDVETNYTTVYNDEENTRIIAEMTAKM 176 Query: 136 VGD----PLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVP 191 +G+ L +G K GN +D R+KG+ ++ + P Sbjct: 177 IGEEGKTALLYGNK-GNLVSDL------------------------RQKGYYAGME-KYP 210 Query: 192 GAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVF 251 +V + + LI + PDL AI S TL A +AV+ + G+I V Sbjct: 211 NITVVEQPTNWDPPTGMKAAQDLIAANPDLKAIHCISDAVTLAAYQAVKTAGKEGEIIVT 270 Query: 252 GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 D + + +E+ Q V+ KK G L++ + EK++ + Sbjct: 271 SYDGNDDALKAVESGQFTSTVL-TGAKKTGYWNIQVALQLASGVRPAEKILNLDTHFVMT 329 Query: 312 TEDGKQWLATHVDG 325 E+ ++ ++G Sbjct: 330 DENKAKFAEMGIEG 343 >UniRef50_A8W015 Rcorf44 n=7 Tax=Alphaproteobacteria RepID=A8W015_AGRRH Length = 380 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 + I +A D K+ ++ L+A+ VDAII+ V+ ++ ++++A AGIPVI + + Sbjct: 111 KFILLDAGFDQKKQVADIEDLIAQKVDAIIVQPVTSTSANASMKKAIAAGIPVIVHTGRV 170 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKG 181 + Y + + G FGK +G D+ + D KI V+ A R G Sbjct: 171 E---TEDYTTE-IQGGAEHFGKVMG----DWLVKTVGDNGKIWVLRGLAGHPEDTNRYNG 222 Query: 182 FEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATL 233 E LK +IVA + G DK SV E L +++PD++ I S GA + Sbjct: 223 LLESLKGT--NVKIVAEEHGDWQYDKGKSVCETLYLNSPDVDGIW--SSGADM 271 >UniRef50_A3DI69 ABC-type sugar transport system periplasmic component-like protein n=4 Tax=Clostridium RepID=A3DI69_CLOTH Length = 372 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/311 (24%), Positives = 132/311 (42%), Gaps = 27/311 (8%) Query: 3 TKMRTTRNLLLMATLLGSALFARAAEKEMT---IGAIYLDTQGYYAGVRQGVQDAAKDSS 59 T TT N + T L F + + T I Y + +Y ++ G+ A K+ + Sbjct: 49 TNSGTTSNNVTGKTDLADTNFDTSYTPKRTSYKIYCTYKNIHAWYDAIKCGIDAAVKELA 108 Query: 60 VQVQLIETN----AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 + ++ AQ D + ++T + + D I + + + A GIPV Sbjct: 109 EKGVTVDYEWYGPAQPDAVDQVNSIETAIGQGWDLIAVDVNQPELTGEAINNAVAKGIPV 168 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAV----INCEA 171 + T V A+ VG+ +G G A A + +IA+ I A Sbjct: 169 AVFGT----SDVPNCDRAFFVGNTDPYGD--GCALAKAVCEKMGGKGQIAILAGTIGALA 222 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGG 230 E +R +GF++ + ++ P +IV Q + ++KAIS+ E + + P+L I+ + Sbjct: 223 HE---ERLRGFKDTI-AKYPDIEIVDEQRDNDEVEKAISITESWLQAYPNLGGILCNNMS 278 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 +GA +AV + ++GKI + G D L++ + A V + MG + +K Sbjct: 279 NPVGACQAVADAGKSGKIVIGGMDHDLRALNALKDGTLYVAQVQ-NCYDMGYKLIYNAIK 337 Query: 291 VINKQADGEKV 301 I DGEKV Sbjct: 338 TI----DGEKV 344 >UniRef50_C0CLG3 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CLG3_9FIRM Length = 333 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/308 (23%), Positives = 141/308 (45%), Gaps = 44/308 (14%) Query: 12 LLMATLLGSALFARAAEKEMTIG----AIYLD-------TQGY--------YAGVRQGVQ 52 +L+AT LG+A+ ++ E T G A D T GY + + +G+ Sbjct: 8 ILLATYLGAAMLTGCSQTESTDGESTAAAAKDEGSGDGWTGGYVCHSANVFFDAIEKGLV 67 Query: 53 DAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAG 112 +AAK++ + + ++++ D+ E + V+ ++++VD I L+ +GS +V+ A++AG Sbjct: 68 EAAKENGGTI--VRSDSELDLQAEMSIVENFISQDVDVIFLTPNDPSGSIESVKLANDAG 125 Query: 113 IPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF 172 IPV+ ++ + + D V A + D GK+ AA+Y + + ++N Sbjct: 126 IPVVVISSELEEG--DYEVLATVKSDDYTAGKQ----AAEYAMEQIGQSGDVLILNGMQT 179 Query: 173 EVCVQRRKGFEEVLK--SRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGG 230 + R +G+++V++ V A V E +V S E ++++ PD A++ +G Sbjct: 180 SDVIDRIRGYKDVIEQYEDVKIANEVMVNENSVA-ACTSAIENMLMACPDAKAVLCYNGF 238 Query: 231 ATLGAVKAVRNQNQ-AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG-NAVFAQT 288 A+ N + I++ D E A+ L +G KMG +A + Q Sbjct: 239 GIPAGYAAMENLGKDTNSISIVDVDGLPEEAELL------------AGGKMGKSAAYGQD 286 Query: 289 LKVINKQA 296 K+A Sbjct: 287 TPGFGKKA 294 >UniRef50_A8S1T0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1T0_9CLOT Length = 368 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 101/213 (47%), Gaps = 11/213 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y++ + G + AA+D V+ L + Q +++ +D+L+ + V+AI LS + + ++ Sbjct: 80 YFSAMESGGKKAAEDLGVEF-LYTGSTQASAAEQVKIMDSLIKQGVNAISLSVLDSSSTN 138 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 +++A EAGI V ++ D YV+ L K LG D Sbjct: 139 PYIKKAQEAGIKVYTSDSDAPDSTRDFYVAQAL-------DKDLGTTLMDCLGEQMGGSG 191 Query: 163 KIAVINCEAFEVCVQRRKGF-EEVLKSRVPGAQIV--ANQEGTVLDKAISVGEKLIISTP 219 K+ +++ E+ + + ++ + + P +IV +G ++A+ ++L+ P Sbjct: 192 KVGIVSGESTATNLNTWIDYIKQRQEEKYPDIEIVDIRYTQGGSSEQALKQAQELMTRYP 251 Query: 220 DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252 DL ++ + G +AV+ + +AG++AV G Sbjct: 252 DLKGLVAVASSTIPGVAQAVQQEGKAGEVAVIG 284 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 17/270 (6%) Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 GV+DAA + V +I ++ +I ++ + + + DAI+++A N ++ Sbjct: 60 GVEDAANEFGANVTVIGPPSETEIDTQTEQLKQAIRQKPDAIVMAATDYNRLVPVAQQIV 119 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN- 168 +AGI +I ++ IN D +S ++ D + G+K G A + K+A+++ Sbjct: 120 KAGIKLITVDSRINS---DDALS-FIATDNIAAGEKAGEEMAKLLPES--SSSKVAIMSY 173 Query: 169 CEAFEVCVQRRKGFEEVLK--SRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMG 226 ++R KG + L+ S + A + + EG L+KA + ++L+ P + I+G Sbjct: 174 VYGTSSQLEREKGVRQWLEGHSHIEVASTLYS-EGR-LEKAYELTKELLSEDPGIKGIVG 231 Query: 227 ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG----- 281 + +T+GA +A+R+ +GK+ + G D + + + +E VL+A + MG Sbjct: 232 LNEPSTVGAGRAIRDLGLSGKVKLVGFDSSVDEVKLIEGG-VLQATIVQKPYNMGYLSVK 290 Query: 282 NAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 A+ A K + K D E VI ++YT+ Sbjct: 291 TAIEAVRGKKVPKLIDTESVIINKDNMYTE 320 >UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1 Tax=Streptococcus uberis 0140J RepID=B9DT58_STRU0 Length = 322 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 39/254 (15%) Query: 83 LVARNVDAIILSAVS--ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + VD I+++ V + + V A + GI VI ++ +++ D V++ +V D Sbjct: 89 FIKTGVDVIVINPVKSKDRNIKKAVEEAEQKGIKVIVIDSQLSK---DVKVTSTIVSDNY 145 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 G+ L A D + +K +I ++ + QR KGF + I A + Sbjct: 146 HAGELL---AKD--LMSKKTSARILLLEHKDAVSGEQRIKGFLDT---------ISAQSQ 191 Query: 201 GTVLDKAISVG---------EKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVF 251 V+ K S+G EK+I S D + IM + A +GAV A+ Q I V+ Sbjct: 192 FKVMTKLESLGQTEIAMPAVEKIIQSQKDFDVIMALNDQAAIGAVAALDKQKVDHPILVY 251 Query: 252 GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV---IQVPIDL 308 G D + ++ L + A V S KMGN QT ++ K A+GE V + VP+ + Sbjct: 252 GVDGSPDMKNLLATTSDVTATVSQSPLKMGN----QTARIAIKVANGESVPSKVTVPVKI 307 Query: 309 YTKTE----DGKQW 318 TK D K W Sbjct: 308 ITKKNIQDFDTKGW 321 >UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter), putative n=6 Tax=Streptococcus RepID=A3CKH1_STRSV Length = 328 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 135/293 (46%), Gaps = 26/293 (8%) Query: 28 EKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 EK++ IG Y+ +Y + ++ K + +L + + D K+S +D V Sbjct: 41 EKQVKIGVTYMTMNNDFYKTLNAELE--KKTNQQGSRLYVRDPELDEGKQSQQIDFFVRE 98 Query: 87 NVDAIILSAVSENGSS--RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 VD I+++ V N S ++++A +AGI +I + I+Q D V +V D + G Sbjct: 99 KVDVIVINPVKSNSPSIISSLQKAKKAGIKIIVVDAPISQ---DVKVDTTIVSDNYQAGV 155 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG--- 201 + A D + ++ I ++ + R +GF + ++ + P +I++ +E Sbjct: 156 LI---AQD--MMKRLPSANILLLEHRNAVSAMDRIQGFIDTIEKQ-PSYKIISQKETLGQ 209 Query: 202 ---TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 T+ ++ E L D N +M + A +GA+ A++NQ KI+++G D + + Sbjct: 210 TEETMPQVKGALDEGL-----DFNVVMALNDRAAIGALAAIKNQGLDKKISIYGVDGSPD 264 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 I L ++ V S +MG V AQ ++++ + + +P+ L + Sbjct: 265 IKNFLATTSDIEGTVAQSPIQMGRKV-AQVIELMQEGKSYDSQYLIPVHLVNR 316 >UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIT8_9CLOT Length = 338 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 26/300 (8%) Query: 29 KEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES-TFVDTLVAR 86 +++T G ++Y Q ++ + +GV D A + ++ I+T+ Q + S E T L+ Sbjct: 47 EKLTFGWSVYTRDQTFFQQLEKGVVDKATELGIE---IKTHDQKNDSNEMVTGCTNLINS 103 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 VDA+I+ V A + IPVI T I DK A ++ D G+ Sbjct: 104 GVDALIVCPCKPEAMGNIVTLAHQKDIPVII--TDIGDGDSDK--DAIIISDMKAGGQMA 159 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQRR-KGF-EEVLKSRVPGA-QIVANQEGTV 203 G A+ I ++A+I CE V QRR +G+ EE+ K+ A ++VAN + Sbjct: 160 GVYTAELLKEKSITSGEVAIIKCEESAVYAQRRNEGYKEEIEKAGFTVAKELVANSK--- 216 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVF-----GSDMTTE 258 ++ +V + ++ S PD+ A+ + GA A++ +AGK V G D+ E Sbjct: 217 QEEGYTVMKDILASNPDIVAVFAANDPMAAGAASALQ---EAGKTDVIVTGFNGDDIALE 273 Query: 259 -IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 IA V + V+ I K + A A K I +K + VP+ K DGK+ Sbjct: 274 YIADGKMMGTVAQDVLGIGAKGVELAKLAVEGKDIPYDNADKKEVYVPVSFIGK--DGKE 331 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 11/206 (5%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V +++ + GD+ KE ++ L+ + VDAI ++ V N + + EAGI ++ Y+ Sbjct: 85 VTVVKPDPAGDMQKEIAILEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDID 144 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRK 180 + K +S G G AADY + + K+ ++ +R Sbjct: 145 TEAQCDAKVLSDNAAG---------GAMAADYLVQEMGTEGKVLILTEVPGVTTAEERIA 195 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 GF++ + P ++V D + E ++ + PD+ I G +LGA A + Sbjct: 196 GFKDRMAEIAPNVEMVEQLSNGTRDTHRATTENMLQAHPDITGIFCFMGDNSLGAYTACK 255 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENN 266 N+ + + G D T E ++N+ Sbjct: 256 TNNRQ-DVLIAGYDATPEQLDIMKND 280 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 126/250 (50%), Gaps = 15/250 (6%) Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 LI + D+ K++ + L+ + VDAI ++ + ++ A +A IPVI + I Sbjct: 73 LITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPIY 132 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 + + V+ + + + G A D + +K D KI ++ + V+R +GF Sbjct: 133 DESL---VNCSIASNNYDAGVL---CAKD--MMSKRDHAKIILLEHATAKSAVERIQGFL 184 Query: 184 EVLKSRVPGAQIV--ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + + S Q++ A+ +G + + A+ ++++ TPD++ +M + + LGA+ A+ + Sbjct: 185 DTIASNA-NYQVINRADCDGQI-EIAMPTMKQMLKETPDVDVVMALNDRSALGALAAIES 242 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 + + V+G D + ++ +EL N +++A S KMG + Q K + + EK Sbjct: 243 M-EIDNVLVYGVDGSPDV-KELINTGLIQATAAQSPVKMGQLAY-QKAKALLENKKIEKK 299 Query: 302 IQVPIDLYTK 311 I+VP++L ++ Sbjct: 300 IEVPVELISR 309 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 27/282 (9%) Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 V+ AK ++VQ + +A D + ++ ++A VD I+L S +G + + E Sbjct: 95 VEAEAKGVKIEVQAGDQHASAD--AQLGIIENMIANKVDGILLVPSSSDGLESALTKCKE 152 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEF-------GKKLGNAAADYFIANKIDQPK 163 AGIP+I +T + + + VG + F G KL A +Y N K Sbjct: 153 AGIPIINLDTKLTDESLAN------VGLDIPFYGTNNYEGAKL---AGEYVAKNFEKGTK 203 Query: 164 IAVI-NCEAFEVCVQRRKGFEEVLKSRVP-GAQIVANQEGTVLDKAISVGEKLIISTPDL 221 A++ E R GF E V A+ AN E +D+ + + +I + PD+ Sbjct: 204 TAILKGIEGQTNAADRYNGFIEGAGDTVTVVAEQTANWE---VDQGYTAAQNIISANPDV 260 Query: 222 NAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG 281 + +GA++A++ N +I + G D +E +EN + L V +MG Sbjct: 261 ELFFCCNDNMGIGALRAIKEANMQEQIQIIGFDAVSEALNLVENGEFLATVAQYPA-EMG 319 Query: 282 NAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG--KQWLAT 321 LK+ + + E I ++ TK G K +L T Sbjct: 320 KLGVDNMLKIFDG-GEAESYIDTGTEVITKDNVGEFKDYLKT 360 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 93/188 (49%), Gaps = 17/188 (9%) Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 S+ V+LI+ NA D++ +++ ++ ++A+ +I++ + +G + A IPV+ Sbjct: 110 SLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLIVAPENSDGLGPALAEAKAKKIPVLT- 168 Query: 119 NTCINQKGVDKYVSAYLVGDPLEF-GKKL-GNA--AADYFIANKIDQPKIAVIN-CEAFE 173 +D+ V+ D + F G G A AAD Q K+A+++ Sbjct: 169 --------IDRTVTGTACSDFIAFIGSNFYGQAQIAADDLATATGSQAKVAILSGTPGNN 220 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK--AISVGEKLIISTPDLNAIMGESGGA 231 V R GF++ +K++ P +VA+Q G D+ SV +++ + P + A+ E+ Sbjct: 221 VTTDRTNGFQDQVKAKYPNMTVVASQTGK-FDQTDGQSVMAQMLQANPGITAVYAENDEM 279 Query: 232 TLGAVKAV 239 LGA++A+ Sbjct: 280 ALGAIQAI 287 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 18/187 (9%) Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 VQL+ + Q + + V+ + + VD I+++ G T++ A AGIPV+ Sbjct: 75 HVQLLFADGQNVHNNQVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGIPVV---- 130 Query: 121 CINQKGVDKYVSAY---LVGDPLEFGKKLGNAAADYFIANKIDQPK--IAVINCEAFEVC 175 + +GVD Y +V D + G++ G ++A + + I ++ A +V Sbjct: 131 -LTSRGVDAEEDLYETVMVADFVWEGRRAGE-----WLAKQTNGKARIIELVGTPAADVA 184 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTP-DLNAIMGESGGATL 233 V R+ GF E + ++ P +I+A+Q G K +V E L+ + ++NA+ + L Sbjct: 185 VMRKTGFAEAI-AKHPDMKIIASQSGDFTRTKGKTVMETLLSAHKGEINAVYAHNDDMAL 243 Query: 234 GAVKAVR 240 GA++A++ Sbjct: 244 GAIQAIQ 250 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 24/242 (9%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAK-DSSVQVQLIETNAQGDISKESTFVDT 82 A AA+K + A DT + + +A+K D +V+V ++A D+SK+ +D Sbjct: 23 AFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAVEVNF--SDANNDVSKQLDQIDN 80 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 +A+ V+AI++ V G V +A++AGIPVI Q KY ++ ++ Sbjct: 81 FIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGI---QSAGGKYT--FVGSKNIDA 135 Query: 143 GKKLGNAAADYFIANKIDQPKIAVI----NCEAFEVCVQRRKGFEEVL-KSRVPG-AQIV 196 G+ G ++ PK A I +R+KGFE+ L +S V A + Sbjct: 136 GRLQGEYMKEHL-------PKGAKILYLEGTPGLSHTQERKKGFEDALGRSDVTTLASLS 188 Query: 197 ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 AN + + + V E I S P +AI+ + LGA++A++ ++ + + G D T Sbjct: 189 ANYDRA---EGMKVTEDWIQSFPKFDAIVAANDQMALGALEALQGADRLKGVMISGVDGT 245 Query: 257 TE 258 + Sbjct: 246 AD 247 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 10/185 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ V Q A + V + + + D+ K+ + ++ + + DAI++SA S +G Sbjct: 62 WWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGVI 121 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 +++A EAGI ++ ++T I+ V + A++ GD + K G Y + Sbjct: 122 PAIKKAREAGIKIVNFDTRISDTSV---IDAFVGGDDVAGAYKAGK----YICEQLGGEG 174 Query: 163 KIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD 220 ++A+I V R GF + + PG ++VA Q DKA V ++ + P+ Sbjct: 175 EVAIITGLMEQSTGVDRHAGFMQAC-AEYPGIKVVAEQGAEWSSDKAADVTTNILTANPN 233 Query: 221 LNAIM 225 + AI Sbjct: 234 VKAIF 238 >UniRef50_A4TH97 Periplasmic binding protein n=41 Tax=Bacteria RepID=A4TH97_YERPP Length = 329 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 135/306 (44%), Gaps = 29/306 (9%) Query: 10 NLLLMATLLGSA--LFAR---AAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQ 63 NL L+ + SA LF AAEK+ I + T ++ + GV +AAK +V Sbjct: 4 NLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKKLNVNAY 63 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC-- 121 + A D +++ ++ L+A+NVDAII+ +++A E GI V+ + + Sbjct: 64 QVGP-ATPDPAQQVKVIEDLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQ 122 Query: 122 -INQKGVDKYVS-AYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR 179 I Q V+ S Y + E K +GN + P + N A ++ Sbjct: 123 RIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAIYVGSLTVP---LHNAWADYAIKYQK 179 Query: 180 KGFEEVLK--SRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 + + E+ + R+P A+ + T LD L+ + P + I+G +GA + Sbjct: 180 EKYPEMFEVTPRLPVAENIDKSYSTTLD--------LMKTYPQMKGIIGFGSLGPIGAGQ 231 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 AV + +IAV G M + A L + KA++ K G AV +++ N+ + Sbjct: 232 AVAKKRAKDQIAVVGIAMPAQAAPYLMRGDIKKALL-WDPKDAGFAV----VEIANQLLN 286 Query: 298 GEKVIQ 303 G+KV + Sbjct: 287 GQKVTE 292 >UniRef50_A1WJR0 Rhamnose ABC transporter, periplasmic rhamnose-binding protein n=42 Tax=Proteobacteria RepID=A1WJR0_VEREI Length = 341 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 22/236 (9%) Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETN-AQGDISKESTFVDTLVARNVDAIILSAVSENG 100 G++ V QG Q+AAK+ +++I T A+ + ++ L+++ V AI++SA + Sbjct: 48 GFFDAVNQGAQEAAKEIK-NIEIIYTGPAKSTAEGQIEIINALISQKVAAIVISANDPDA 106 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAY---LVGDPLEFGKKLGNAAADYFIAN 157 + +++RA GI V+ +++ + + G ++S L+G+ L +L A Sbjct: 107 LAPSLKRAMGRGIKVLSFDSGVRKDGRMMHLSPSSNALIGEKLV---QLTQQAIG----- 158 Query: 158 KIDQPKIAVINCEAFEVCVQRRKGFEEVLK----SRVPGAQIVANQEGT-VLDKAISVGE 212 D +IAV++ A + EE+ K G ++V+ G +DK+ + Sbjct: 159 --DSGEIAVVSSTA--QATNQNIWIEEIRKVLARPAYKGLKLVSVAYGDDQIDKSYRETQ 214 Query: 213 KLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 L S P+L AI+ + A KAV+++ + G + V G + +E+A ++N V Sbjct: 215 GLFKSYPNLKAIIAPTTIGVAAAAKAVQDEKKVGSVYVTGLGLPSEMAGHVKNGAV 270 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 133/304 (43%), Gaps = 16/304 (5%) Query: 10 NLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETN 68 N L+ T + ++ ++ IGA Y+ +Y+ + + + K+ Q LI + Sbjct: 25 NYLINTTTQSNMIYNSTEPRK--IGATYMTYNNTFYSVINEEISRILKEHGDQ--LIALD 80 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVD 128 + + K+ + L+ + VDAI+++ V G +++ A IPVI +T + + Sbjct: 81 SAMSLKKQKEQIHYLIEQQVDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKH---N 137 Query: 129 KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKS 188 K ++ +V D + G + A D + K+D I ++ R KGFE+ ++S Sbjct: 138 KNITYSIVSDNYDAGVQ---CAKD--MMRKLDHANIVLLQHSTTRSGYLRIKGFEDTIQS 192 Query: 189 RVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 ++V E L+ A+ E I + + +M + + +GA+ A+ + N Sbjct: 193 N-ENYKVVKRMECDGQLEVAMPKMESFIEEGIEFDVVMCLNDPSAMGAMAALSSNNILKD 251 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPID 307 V+G D T E A+E+ + A V S K G K+ +++ K P+ Sbjct: 252 KYVYGIDGTPE-AKEMVVEGKMAATVAQSPKTFGKKAGEVIYKLFSQETIKNKNEMSPVQ 310 Query: 308 LYTK 311 + TK Sbjct: 311 IITK 314 >UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Rhizobiales RepID=B5ZNU3_RHILW Length = 329 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 15/275 (5%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAG-VRQGVQDAAKDSSVQVQL 64 R L A ++ +A+ + ++TI I DT +Y V G + A KD V V Sbjct: 10 RRAFTALAGAAVIATAMPVTSFAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPE 69 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + A+ DI+ + + ++ VA A+++S + + A+++ +P+I ++ + Sbjct: 70 LGAQAESDINGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAKS-VPIIGIDSGADS 128 Query: 125 KGVDKYVSAYLVGDPLEFGKKL--GNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 K ++L D ++ G+ G AAA + K + + + N QRR+GF Sbjct: 129 KA----FKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGEIVILTNLPGVGSLEQRREGF 184 Query: 183 EEVLKSRVPGAQIVANQEGTVLDKAISVG----EKLIISTPDLNAIMGESGGATLGAVKA 238 + +K++ PG +++A++ G D + G LI + P L + + G +A Sbjct: 185 LDQIKTKHPGLKVIADKYG---DGQATTGLNMMTDLITANPKLVGVFASNLILAQGVGQA 241 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 + KI V G D + L++ + VV Sbjct: 242 IAENKLGDKIKVIGFDSDDKTVGFLKDGAIAGLVV 276 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 18/196 (9%) Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 + D++K+ ++ V + +DAI+++A N ++RA EAGIPVI ++ IN Sbjct: 71 ETDVAKQVNVINDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINA----D 126 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF----EVCVQRRKGFEEV 185 + +++ + E KK A +AN I K + C F + R GF+E Sbjct: 127 FPISHIATNNKEAAKK-----AAEVLANIIG--KKGEVACIPFVAGAATSIARENGFKEG 179 Query: 186 LKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 + S +VA Q + A+ V E ++ + P+L I + +GA +A++ + + Sbjct: 180 I-SNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIFAANEAGAVGAARALKARGK 238 Query: 245 AGKIAVFGSDMT-TEI 259 + + G D TEI Sbjct: 239 TADVILVGFDAAQTEI 254 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 8/201 (3%) Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 A + + ++I +A D SK+ ++ V VD II S + V A +AGIP Sbjct: 59 AAEKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIP 118 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFE 173 VI + I+ DKY + ++ D ++ G+ G AD + D K+ I E Sbjct: 119 VILLDRKIDG---DKY-TQFIGADNVDMGRIAGEYIADTLLP---DGGKVCEIKGLEGTS 171 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATL 233 + R GF E +K + N + +KAI+V E+++ + +++ + + Sbjct: 172 GGIDRDNGFREGIKKNDKIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFLALNDPMAE 231 Query: 234 GAVKAVRNQNQAGKIAVFGSD 254 GA A +N + G I G D Sbjct: 232 GAYIAAKNAGREGDILFVGFD 252 >UniRef50_Q8KIM1 Sugar ABC transporter, substrate-binding protein n=9 Tax=Rhizobium RepID=Q8KIM1_RHIEC Length = 362 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 14/170 (8%) Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 SK+ ++ L+A+ VDAII++ ++ + +++A AGIP + Y ++ + + Sbjct: 104 SKQVADIEDLIAQKVDAIIIAPLTTGSAVEGIKKAKAAGIPTVVYLGRVDT----EEFTV 159 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKI-DQPKIAVINCEA-FEVCVQRRKGFEEVLKSRVP 191 + GD FG+ + F+ +K+ ++ K+ V+ A + R G EV Sbjct: 160 QVQGDDFYFGRVMAQ-----FLVDKLGNKGKVWVLRGVAGHPIDADRYAGAMEVFSKS-- 212 Query: 192 GAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 G QI + Q G+ + + + E L +S PD+ I + +LG + A++ Sbjct: 213 GLQITSTQHGSWSYEDSKKIAESLYLSDPDVAGIWTDGANMSLGVLDALQ 262 >UniRef50_Q029E0 Transcriptional regulator, LacI family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q029E0_SOLUE Length = 338 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 20/218 (9%) Query: 26 AAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 AA + IG I D ++A + +GV + V + + GD+ ES+ VD L+ Sbjct: 62 AARRTFMIGLIVPDLMHSFFAEIAKGVAATIRPLGYDVVICNSEENGDL--ESSEVDRLL 119 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 R VD ++L++ S R G P + I+++ D + + Y+ D + Sbjct: 120 GRQVDGLLLASAQPPSSLAVFERIEARGTPYVL----IDRRFADVH-APYVGAD----DE 170 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKS---RVPGAQIVANQEG 201 +G A + I +IA I A + R+KG+EE L + +P IV + Sbjct: 171 AIGRMATQHLIDRGCR--RIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFIV---QA 225 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 T D +L+ TP +AI G + GA+KA+ Sbjct: 226 TDDDTGYQATRRLLKLTPRPDAIFGYNDPTAAGAMKAI 263 >UniRef50_A6ULC6 Putative ABC transporter, periplasmic solute-binding protein n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6ULC6_SINMW Length = 323 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 13/193 (6%) Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 ++ +A+N I++ + + G++R + A++ G+PV +N K + A++ D Sbjct: 95 IEGALAKNYSGIVVVPIFD-GTARIINEATDEGVPV--FNIIAEGAAPSKRL-AFIGQDA 150 Query: 140 LEFGKKLGNAAADYFIANKID-QPKIAVINCEAFEV-CVQRRKGFEEVLKSRVPGAQIVA 197 GK++G +IA K++ K+ VI QR G LK+ P +IV Sbjct: 151 TSAGKQIGE-----YIARKMNGNGKLGVITGYFGATQHTQRMNGALGFLKANHPDIEIVG 205 Query: 198 NQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 E + A S+ + ++ + PDL+ + +GG GA KAV++ +GK+ V G D T Sbjct: 206 PFENKDKAESAYSLVQDMMTANPDLSMVYVTAGGP-FGAAKAVKDLGLSGKVGVVGFDHT 264 Query: 257 TEIAQELENNQVL 269 + Q L+ +++ Sbjct: 265 PDNMQYLKTGEMV 277 >UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroides RepID=C3RC01_9BACE Length = 282 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 34/254 (13%) Query: 43 YYAGVRQG-VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 ++ +++G +Q AA + + + T Q ++ ++ + +L+ + VDAI+L + Sbjct: 18 FFKVMKEGAIQYAAPLPFLDLVCVGTATQTEVKEQIDLMYSLIHQQVDAIVLVPIDSKAL 77 Query: 102 SRTVRRASEAGIPVICYNT-----CINQKGV-------DKYVSAYLVGDPLEFGKKLGNA 149 + A GIPVI + + Q GV D + +AY VG L GKKL N Sbjct: 78 VQPAVEAVRKGIPVINIDIQLDAQLLEQAGVEVAFVGPDNFAAAYEVGKLL--GKKLRN- 134 Query: 150 AADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKA 207 + K+A+I A + QR++GF + ++ + G ++VA++ +KA Sbjct: 135 -----------EDKVAIIEGLAAADNAQQRKRGFIKAIEEK--GLRLVASEPADWETEKA 181 Query: 208 ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ 267 V + + + PDL A+ + LG ++ + Q + + V G D + +E + Sbjct: 182 AEVFQAMWMRYPDLKAVYCSNDAMALGVLQ--QMQEKKCYLPVVGFD-NDAVMKEFLSTG 238 Query: 268 VLKAVVDISGKKMG 281 L A DI +M Sbjct: 239 KLVATADIFSSQMA 252 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 19/255 (7%) Query: 9 RNLLLMATLLGSALF---ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDA-AKDSSVQVQL 64 R LL AT+L +A+ A AA++ + + + Y+ VR+G DA AK + + Sbjct: 24 RRLLCAATMLCAAVAVGQAHAADRGIAV-IVKTANSNYWQNVRKGAADAVAKVENYTMTF 82 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 ++ ++ + V V + V AI+L+ + ++R+A EA IPV+ ++ I+ Sbjct: 83 QGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISD 142 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP-KIAVIN-CEAFEVCVQRRKGF 182 G KY ++L D G+ LG D+ + Q K+A+++ + R GF Sbjct: 143 SGA-KYYQSFLATDNEAAGEALGKEMVDH-----VGQTGKVAIMSYVPGVGSEIGRVGGF 196 Query: 183 EEVLKSRVPGAQIVA---NQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 + + QIV +Q L A++ ++ S PDL I + +G +A+ Sbjct: 197 RKYIAEH-SHIQIVGPFYSQSQMAL--AMNQTTDVLASNPDLKGIFAANEMTAVGVGRAI 253 Query: 240 RNQNQAGKIAVFGSD 254 + ++GK+ D Sbjct: 254 QQAGKSGKLYAIAFD 268 >UniRef50_C9R4N9 Autoinducer-2 (AI-2) kinase n=3 Tax=Gammaproteobacteria RepID=C9R4N9_AGGAD Length = 365 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 15/217 (6%) Query: 14 MATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDI 73 ++ LLG ++ A A + L G++ QG + K SV V + + + Sbjct: 37 LSVLLGLSVVATAQSADRIAFIPKLVGVGFFTSGGQGATEMGKTLSVDVTY-DGPTEPSV 95 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 + ++ V + +AI++SAVS +G T++RA + G+ V+ +++ + Y++ Sbjct: 96 PNQVQLINNFVNQGYNAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPECRSHYINQ 155 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRV--- 190 G P + G L + A AN+I +PK V + + + +E K+++ Sbjct: 156 ---GTPEQLGSMLVDMA-----ANQISKPKAKVAFFYSSPTVTDQNQWVKEA-KAKIAKD 206 Query: 191 -PGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIM 225 P +IV Q G K++ E ++ + PDL+AI+ Sbjct: 207 HPEWEIVITQFGYNDAIKSLQTAESILKAYPDLDAII 243 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 25/189 (13%) Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV--- 127 GD++K++ ++T +AR A+IL + S ++ R +AGIP Y+ IN+ G+ Sbjct: 67 GDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREINKTGIAVT 126 Query: 128 ----DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 + + A L G+ +F + +G+ +Y + ++ E+ R +GF Sbjct: 127 QIVSNNFQGAQLAGE--KFAELMGD-GGEY----------VELLGPESDTNAQVRSEGFH 173 Query: 184 EVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 ++L + P ++VA Q +A S E ++ + P++ ++ + LGA A++ Sbjct: 174 DILDN-FPEFKMVARQSANWSQTEAFSRMESILQANPNIKGVITGNDSMALGAEAALQ-- 230 Query: 243 NQAGKIAVF 251 AG+ VF Sbjct: 231 -AAGRKDVF 238 >UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=Actinobacillus RepID=A3MZG8_ACTP2 Length = 323 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 14/208 (6%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 + L+ +AQ ++ V TLV VD + ++ V N + + +A +A +P+I +N Sbjct: 54 LSLLMNDAQNSQFVQNNQVQTLVNHKVDVLAVNLVDPNAWATVIGKAKDANLPIILFNKD 113 Query: 122 INQKGVDKYVSAYLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEV 174 K ++ Y Y VG +P E GK A+++ + N + + AV+ E Sbjct: 114 PGAKAINSYKKVYYVGSNPEEAGKAQAKMIANHWKSSEALDLNHDGKMQYAVLKGEVGHP 173 Query: 175 CVQRR-KGFEEVLKSRVPGAQIVANQEGTVLDKAISVGE-KLIISTP--DLNAIMGESGG 230 ++R K E LK++ + +A E V +K I+ + +STP ++ I+ + Sbjct: 174 DAEKRTKAVIEELKTQGIKTEQLA-LESAVWNKEIAKAKVNAWLSTPQNNIEVIISNNDS 232 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 +GA++ V +++A + ++G D T E Sbjct: 233 MAIGALEVVTEKDKA--LPIYGVDATPE 258 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 21/245 (8%) Query: 35 AIYLDTQG--YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92 A+ L TQ ++ + +GV+ V+V L ++ D+ + T +++ + + D I Sbjct: 68 AVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQGYDGIA 127 Query: 93 LSAVSENGSSRTVRRASEAGIPVICYNT------CINQKGVDKYVSAYLVGDPLEFGKKL 146 ++ +S + A+ GI ++ + NQ G A++ D + G K Sbjct: 128 IAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGA---CVAFVATDNVAVGAK- 183 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTVLD 205 A Y + + K+A+I ++ + R +G ++ G + + + D Sbjct: 184 ---GAQYIVDTAGEGAKVAIIEGKSGNQSSEDRTQGAKQAFTD---GKMDIISSQAADWD 237 Query: 206 --KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 KA+ + LI PDL I + G LGAV+AV N N+ G+I + G+D E + Sbjct: 238 RQKAMDIASTLIQQNPDLKGIYCCNDGMALGAVQAVINANKLGEIMIVGTDGDAEAVSSI 297 Query: 264 ENNQV 268 NN++ Sbjct: 298 ANNEL 302 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 11/204 (5%) Query: 72 DISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV 131 D++++ V + AI+L G ++ A+ AGIPV + G + V Sbjct: 91 DVARQKNQVKDFIVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAPGAE--V 148 Query: 132 SAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVL---KS 188 +++ D L GK+ A + A K+ +++ +A E C+ R +GF+EV+ S Sbjct: 149 VSHIATDNLGGGKQAAEAMIE---AVGSAGGKVVILDFKAAESCILRVQGFKEVIDKHNS 205 Query: 189 RVPGAQIVANQE---GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 P + I E DK+ E + + PDL I + + LGA A+ N+A Sbjct: 206 ENPSSAITIVSELPGDGQKDKSYKAAEDALQAHPDLAGIFAINDPSALGARAALEKANKA 265 Query: 246 GKIAVFGSDMTTEIAQELENNQVL 269 ++ + G D + Q ++ ++ Sbjct: 266 DQVKIVGFDGQPDGMQAIDEGKIF 289 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/235 (21%), Positives = 105/235 (44%), Gaps = 19/235 (8%) Query: 25 RAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQ---LIETNAQGDISKESTFV 80 + K++ GA Y+ Y+ + + +++ SVQ + LI + D K++ + Sbjct: 22 KDTRKQLKFGATYMTMNNPYFVNMDENIEE-----SVQAKGDILITRDPLQDQKKQNEQI 76 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 ++ +D + L V N + + IPV ++ ++ + V + +V D Sbjct: 77 KDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDT---EAVVSTIVSDNY 133 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 + G + A D + K I ++N +A +R KGF + +K P +IV +E Sbjct: 134 DAGVQ---CAKD--MMKKKTSANIIIVNQKALNSINERVKGFRDTIKGH-PQYKIVEEKE 187 Query: 201 GTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 + A+ V EK+I + + +MG + LG + A++ ++ ++ V+G D Sbjct: 188 SAAEFEIAMKVMEKIIYEKKNYDVVMGGNDPIALGCIAAMQMTDKTDQVMVYGVD 242 >UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YA80_DICT6 Length = 338 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 31/229 (13%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 L+ + +L +F+ KE+ + I Y+A V GV+ AAKD V+ + Sbjct: 5 LVAILIILFPLIFSIGYSKEIHVAVIGKSVHPYWAEVELGVKQAAKDLGVKATFFVPQKE 64 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK----- 125 DI + + +++ +A VD I ++ + T+ +A GIPVI +T Q Sbjct: 65 -DIPAQISQMESFIAMGVDGIAIAPSDPTAIAPTIEKAMAKGIPVITLDTDAPQSKRLVY 123 Query: 126 -GVDKYVSAYLVGDPLE--FGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 G D Y + + G + G K G A I + +N ++R +GF Sbjct: 124 IGTDNYSAGKIAGMVMNDLLGIKGGKVA--------IGTGSLTAMNS------LERIRGF 169 Query: 183 EEVLKSRVPGAQIVANQEGTVLD-----KAISVGEKLIISTPDLNAIMG 226 + + S +IV + + D +A+++ E+ +++ PDL G Sbjct: 170 MDGIASN---KRIVVVTKPALCDFEDTGRAVTLAEQALLTYPDLRGFFG 215 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 144/312 (46%), Gaps = 30/312 (9%) Query: 10 NLLLMATLLG-SALFARAAEKEMTIGAIYLDTQG--YYAGVRQGVQDAAKDSSVQVQLIE 66 ++LL A LL S F+ +A+ + AI L T ++ ++ G + AK + + +LI Sbjct: 10 SVLLSAALLSVSTSFSASAQDAI---AIVLSTMNNPFFVTMKDGAE--AKAAELGYKLIA 64 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 ++Q D SKE V+ L R V AI+++ + +R A+ A IPV+ +++ Sbjct: 65 LDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVL----TLDRTA 120 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF---EVCVQRRKGFE 183 + +++ D + G+ G FIA ++ + VI E +R +GF Sbjct: 121 AHGDIVSHIASDNIAGGELAGE-----FIAQQLGK-NAKVIQLEGIAGTSAARERGEGFS 174 Query: 184 EVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + + +++++Q K ++V E ++ + D+ A+ ++ LGA++A+ Sbjct: 175 NAVTAN--NFELLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIE-- 230 Query: 243 NQAGK-IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 AGK I V G D T E + Q L A V + +G +++ Q EK Sbjct: 231 -AAGKDILVIGFDGTDEGIAAVRRQQ-LSATVAQQPELLGATAIMTADRILKGQV-VEKS 287 Query: 302 IQVPIDLYTKTE 313 I V + + T+T+ Sbjct: 288 IPVALKIITQTQ 299 >UniRef50_B9KBM0 Sugar binding protein of ABC transporter n=2 Tax=Thermotoga RepID=B9KBM0_THENN Length = 327 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 31/275 (11%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-----YYAGVRQGVQDAAKDSSV 60 R R L+ + +L F++ YL + G ++A V +G++DA + V Sbjct: 17 RMRRVLIFLMVVLAVFGFSKYT--------FYLVSHGGPADPFWAVVMKGLKDAGEKYGV 68 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + + + + V++ +AR D +I++ + +R+A + GIPV+ N Sbjct: 69 ETVYLGPE-KYSLKEFIDLVNSAIARKPDGLIVTITNPVALDEPLRKAIKMGIPVVAINV 127 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ---PKIAVINC-EAFEVCV 176 + + VG + A + A ++ Q PK AVI E + Sbjct: 128 PDTRPPEEAIPYLVYVG--------MDEYLAGVYAARRMLQEFTPKRAVIAIHEPGHAGL 179 Query: 177 Q-RRKGFEEVLKSR-VPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLG 234 + R KG +VL + +P ++ + T KA+S+ + ++ PD +AI Sbjct: 180 EARAKGIMDVLSEKNIPVEKLDITTDPT---KALSIMKSYLMKHPDTDAIFTLGPLGAHP 236 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVL 269 A++ V + GK+ + D+TT+I + +++ VL Sbjct: 237 AIQLVEEEGLKGKVKIGAIDLTTKIIEAIKDGTVL 271 >UniRef50_Q7WIY8 Putative sugar ABC transport system, substrate-binding protein n=2 Tax=Bordetella RepID=Q7WIY8_BORBR Length = 361 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 21/273 (7%) Query: 43 YYAGVRQGVQDAAKDSSVQV-QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 +Y G+ G+ D A+ S+V+V Q+ A G++ ++ + + VD +LS + +G Sbjct: 68 FYKGIAYGIVDEARRSNVEVVQVAVAGAYGNVQQQFAQLQSFKTLGVDYAVLSPAAYSGY 127 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 V + +GI I +N DK L D L GK LG A D K Sbjct: 128 DPVVADLARSGIKTISAGIPVNS---DKIAFGVLQDDTL-IGKVLGKALCDDGAQGKQ-- 181 Query: 162 PKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIV--ANQEGTVLDKAISVGEKLIISTP 219 I V E R +GF+EV + GA++ A + L ++ + L++ TP Sbjct: 182 -VIVVPGAAGLEWSRLRYEGFKEVASAC--GAKLTPAAFRGEMSLADGMAQTQDLLMRTP 238 Query: 220 DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKK 279 D + +GAV+A R N+ + V S M E + ++L AV G Sbjct: 239 DAEYVFTPVTFLGMGAVRAARQANR--PVKVLTSAMVKENEAMIREGRLL-AVASEPGVI 295 Query: 280 MGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 MG + ++ + E + P+D T++ Sbjct: 296 MGRLIVQYAIR------EHEGLPMPPLDKPTRS 322 >UniRef50_C0C307 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C307_9CLOT Length = 372 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 24/231 (10%) Query: 34 GAIYLDTQG--YYA--GVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVD 89 G IYL +G YYA +++ A D +++ NA+ D+SK+ T++ ++ Sbjct: 43 GKIYLLHKGLDYYAWAAMQEAFDKYAGDLDCNYEIL--NAENDVSKQVEQFKTVLTQDPK 100 Query: 90 AIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNA 149 AII++A+ V+ A++AGIPV Y+T I +D V D L G++ Sbjct: 101 AIIVTAIDSESLIDCVKEANDAGIPVGVYDTPITGGDIDITVDC----DNLMAGQQAAEI 156 Query: 150 AADYFIANKIDQPKIAVINCE---AFEVCVQRRKGFEEVLKSRVPGAQIV-ANQEGTVLD 205 D + K + K V+N A +V +R++GF+ V++ + P +++ A+ +G D Sbjct: 157 IVDK-LKEKNGEEKGKVLNVFGDLASQVMQERKQGFDNVME-KYPNIEVIEASGKG---D 211 Query: 206 KAIS--VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 + +S + + D++A+ A G +AV + AGK+ G + Sbjct: 212 RLLSQDAASNALAANEDIDAVHAPCDNAFYGVYEAVES---AGKLKKVGEE 259 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 132/269 (49%), Gaps = 24/269 (8%) Query: 51 VQDAAKDSSVQ---VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRR 107 +QDA K+ + + I ++AQ D +++ V+ ++RNVDAII++ V + V Sbjct: 59 MQDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNM 118 Query: 108 ASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI 167 ++AGIP+I N + GVD+ +A++ + ++ G A ++ IA++ Sbjct: 119 VNDAGIPIIIANRTFD--GVDQ-ATAFVGSESIQSGLLQMEEVAKLL----NNEGNIAIM 171 Query: 168 NCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKA--ISVGEKLIISTPDLNA 223 + E E + R +G +++++ G ++V +GT D++ + + E + S +++A Sbjct: 172 DGELGHEAQIMRTEGNKQIIEEH-DGLEVVL--QGTAKFDRSEGMRLMENWLNSGTEIDA 228 Query: 224 IMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNA 283 ++ + LGA+ A+ + + V G D T + ++ + L V K G Sbjct: 229 VVANNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGK-LDVTVFQDAKGQG-- 285 Query: 284 VFAQTLKVINKQADGEKV--IQVPIDLYT 310 A ++KV + A+GE V +P +L T Sbjct: 286 --ATSVKVAVQAANGEDVEDAMIPYELVT 312 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 28 EKEMTIG-AIYLDTQGYYAGVRQGVQD----AAKDSSVQVQLIETNAQGDISKESTFVDT 82 +KE+ IG A+Y + + V+ + + +K++ ++ + + QG + ++ VDT Sbjct: 39 KKEIKIGVALYKFDDTFISSVKDAINEISDEKSKETGEKITINAVDGQGQQATQNDQVDT 98 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG-DPLE 141 + + D I ++ V +S +++A AGIPV+ +N + + K+ Y VG E Sbjct: 99 FITQGYDVIAVNMVDRTAASVIIQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAEE 158 Query: 142 FGKKLGNAAADYFIAN 157 G G AADYF AN Sbjct: 159 SGTIQGEVAADYFKAN 174 >UniRef50_Q1WVL1 D-ribose-binding protein n=2 Tax=Lactobacillus salivarius RepID=Q1WVL1_LACS1 Length = 330 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 22/270 (8%) Query: 20 SALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQG-DISKES 77 S+ + ++ + IG+ Y+ +Y + + V+ K S ++ T G +SK+ Sbjct: 34 SSFYMPFVKQPVKIGSTYMTLNNSFYKTINEEVK---KQVSQNGDILYTRDPGLSVSKQC 90 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRA----SEAGIPVICYNTCINQKGVDKYVSA 133 + + + VD I+++ V NG S+ ++ A + GI ++ ++ ++ +V+A Sbjct: 91 QQIYDFIDKKVDVILINPV--NGESKQIQHALKIAHDKGIKIVVVDSQLSNSS---FVNA 145 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGA 193 +V D K G A Y + + Q KI V+ +R +GF +K P Sbjct: 146 NVVSDNF----KAGVLDAKYMMKSS-PQAKILVLRHWNALSVKERYRGFVSEIKDN-PNY 199 Query: 194 QIVANQEGT-VLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRNQNQAGKIAVF 251 QI N E D A+ ++L+ PD + IM + +GA+ A+ N KI V+ Sbjct: 200 QITENLETLGQTDVALKNVQELLKVDPDKFDIIMAMDDQSAVGALAAMDALNLHNKIMVY 259 Query: 252 GSDMTTEIAQELENNQVLKAVVDISGKKMG 281 G D +T + L +N +A V S K+G Sbjct: 260 GIDGSTNMKHLLLSNPNAQATVAQSPIKLG 289 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 17/225 (7%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++A V +G ++ A + V++ ++ + D+ + V+ + + V AI ++ N + Sbjct: 38 FWASVERGAREKAAELGVKIVVLSPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALA 97 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ- 161 + + A AGIPV+ +T KG++K V+ +G + G K+ AAD FI +++ + Sbjct: 98 KVIESARSAGIPVVFIDT----KGINKGVT--FIGTDNKAGAKM---AAD-FICDRVSRG 147 Query: 162 PKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTVLDKA--ISVGEKLIIST 218 +A++ + + R G LK G IVA Q D+A +V E ++ Sbjct: 148 SDVAILQGIITQSTGKARADGAHAGLKG--CGLNIVAEQPAN-WDRAQGRTVMENILTRN 204 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 L A+ + LGAV+A+++ + + V G D + A+ + Sbjct: 205 QKLKAVFASNDNMALGAVEALKDADMLNDVIVVGFDANPDAAKSI 249 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 29/268 (10%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNA 69 L L+ +L + F+ + K +TIG Y ++ + + + + V + + +A Sbjct: 18 LGLLPAILPACGFSESHHK-LTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAV--SA 74 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 + D K+ + V+TL+ + +D +I++ S + + +R A++A IPV+ VD+ Sbjct: 75 EEDEQKQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVV---------VDR 125 Query: 130 YVSAYLVG-----DPLEF----GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 Y Y G D + F +K G+ A+ +A + +A+ V R+ Sbjct: 126 Y-PGYAPGQNKNADYVAFLGPNNEKAGSGIAEALMAGGGSK-FLALGGMPGNSVAQGRKA 183 Query: 181 GFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTP--DLNAIMGESGGATLGAVK 237 G E L + G ++V Q G DK ++ E ++ + P D NAI + GA+K Sbjct: 184 GLESALTAV--GHRLVQFQYAGDSEDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIK 241 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELEN 265 AV N N+ + G D+T + +EN Sbjct: 242 AVYNANREKEFIFGGMDLTPQAIAAIEN 269 >UniRef50_A9KQP5 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Clostridiales RepID=A9KQP5_CLOPH Length = 347 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 12/227 (5%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 NA GD++++ ++ + + VDAI++ + S V++A E GI +I Y+ I V Sbjct: 73 NASGDVNEQVRQIEYFIEKQVDAIVIIGIDSEKLSTVVKKAKEKGIKIIAYDRLIMNADV 132 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR-RKGFEEVL 186 D Y+S D GK + +A F+ N + + K+ + + V KGF+ V+ Sbjct: 133 DLYISF----DNEAVGKMMASA----FVENGLTKGKVLMFCGPMTDNNVSMIEKGFQSVI 184 Query: 187 KSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG 246 K + + + ++ + I + +AIM + G + + AG Sbjct: 185 KEHDIEILDILHADNWRAEETRKYVNEHIDVVKEADAIMCGNDGLAGQTIYDLAELRLAG 244 Query: 247 KIAVFGSDMTTEIAQEL-ENNQVLKAVVDISGKKMGNAVFAQTLKVI 292 K+ V G D E Q + E Q++ ++ K+ A T+K++ Sbjct: 245 KVMVVGQDADLEACQRIVEGTQLMTVYKPVA--KLAQAAAEDTIKLV 289 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/282 (22%), Positives = 127/282 (45%), Gaps = 28/282 (9%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 A+ + ++ +++G ++ A+ + LI +AQ D +K+ ++ L+ + V I+++ Sbjct: 45 AVSTQSNPFFVTLKKGAEEEAQKQGLT--LITVDAQDDPAKQIASIEDLIQKKVKVILVN 102 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 + V+ A+ AGIPV+ + +N V +V++ V G AA+Y Sbjct: 103 PTDSDAVVGAVKAANAAGIPVVTLDRSVNGGEVASHVASDNVAG--------GKMAAEYL 154 Query: 155 ---IANKIDQPKIAVINCEAF---EVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKA- 207 I N+ D V+ E +R +GF +V+ + ++V Q D+A Sbjct: 155 LEKIGNQGD-----VVELEGIPGASAARERGQGFHDVI-DQAKDVKVVGRQPAD-FDRAK 207 Query: 208 -ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 +SV E ++ + ++ + + LGAV+A+ + V G D T + ++ Sbjct: 208 GLSVMENILQANKNVKGVFAHNDEMALGAVQALEAAGMK-DVTVVGFDATDDAVNAVKAG 266 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 + + A V K +G K+I+ Q +K + VP+DL Sbjct: 267 K-MSATVAQKPKLIGKTAVDAAKKIIDGQP-VDKSLPVPLDL 306 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 20/219 (9%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ V+ G + AA + +V++ + + K+ + + + AI +A+ S Sbjct: 59 FWQAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASV 118 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI--- 159 +++A AGIPVI +++ GVD + P+ N AA A+K+ Sbjct: 119 PLLQKAKAAGIPVIAFDS-----GVDSDI-------PITTA-STNNVAAAALAADKMAEL 165 Query: 160 --DQPKIAVINCEAFEVC-VQRRKGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLI 215 + +I VI + V V RR GF +K + P +IV Q G K+ + + +I Sbjct: 166 IGGEGEIGVIVHDQTSVTGVDRRDGFVNRIKEKYPNIKIVDIQYGGGDHLKSTDLAKAMI 225 Query: 216 ISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 + P++ G + G+ +G + AV + G+I V G D Sbjct: 226 QAHPNIKGFFGSNEGSAVGVINAVTELKKEGQITVIGFD 264 >UniRef50_B1YXY0 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1YXY0_BURA4 Length = 417 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 121/283 (42%), Gaps = 49/283 (17%) Query: 36 IYLDTQGYYAGVRQGVQDAAK-DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 I L + ++ Q AAK S+ VQ+ A GD+ ++ +D V R +D I++ Sbjct: 74 ITLGNPWFVELIKGARQSAAKYGYSIDVQV----ADGDLQRQCAQIDNFVTRKMDVIVVD 129 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGV-------DKYVSAYLVGDPL--EFGKK 145 G S + RA +AGIPV+ T + + Y S + VG + E GK Sbjct: 130 PTDTLGVSACINRAVDAGIPVVTVGTTPDASARVLTTLLGNPYASGFEVGRYVAKEAGKD 189 Query: 146 -----------LGNAAADY----FIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRV 190 LGN+ ++ IA +DQ ++ N A R GFE + Sbjct: 190 TPIDAAVVIGVLGNSTSESRINGLIAGIVDQ-RMRERNTSASREDAMLR-GFELFQTLKK 247 Query: 191 PGAQIVANQEGTVLDKAISVG----EKLIISTPD--------LNAIMGESGGATLGAVKA 238 G + + VL A+ VG E + +T D LN I+ E+ LGA++A Sbjct: 248 TGKLSAPDIKFNVL--ALGVGKWTEEGSLAATEDILSAHGSKLNFILSENDFMGLGALRA 305 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG 281 VRN + GKI + +D EL+ Q+ K + +SG+ G Sbjct: 306 VRNMGKQGKIRI--ADAAGGYRGELD--QIKKGNILVSGENSG 344 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/244 (20%), Positives = 108/244 (44%), Gaps = 19/244 (7%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ + QGV+ A+++ V + + + +T++ RN A+I +A++ Sbjct: 40 FWGAMGQGVEAGAQEAGVAYYMQAVESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLL 99 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN-------AAADYFI 155 ++ A +AGI V+ + ++Q A L + +E ++G+ A+Y + Sbjct: 100 PCLKSAQDAGIKVVDLDGNLDQ--------AILDAEGIEITFRIGSDNVLAGAQGAEYVV 151 Query: 156 ANKIDQPKIAVINCEAFEVCV---QRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVG 211 + V+ E + +R GF + L PG +IVA+ G KA ++ Sbjct: 152 SQLGADATGPVLVIEGLSGNITGQKRASGFADKLAELAPGLEIVASLPGDWDRGKAANIT 211 Query: 212 EKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKA 271 ++ P L AI + G LGAV++V + G++ + G D ++ + + ++ + Sbjct: 212 NDILTRNPGLVAIFAANDGMALGAVESVFAAGKGGEVIIVGVDGNSDAVKSINEGRLTAS 271 Query: 272 VVDI 275 V + Sbjct: 272 VAQL 275 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 19/255 (7%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN-- 119 ++LI +A+ D K+ + + + VD IIL V+ + + +AGI ++ N Sbjct: 104 LELIFVDAKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRR 163 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR 179 GV AY+ + L FG++ AA + I ++ E + R Sbjct: 164 PTYLPDGV-----AYVGSEELRFGEEQAKYAASHSDGGNIG----IIMGMMTVEAAILRT 214 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVL---DKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 +G E+ K + P I+ Q T L + + V E I S L+ I+ + LGA+ Sbjct: 215 QGVEDFFKEK-PEYNIIRKQ--TALWQRSQGMVVMENWINSGDKLDIIISNNDDMALGAI 271 Query: 237 KAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 +A+R + V G D T + ++N L A V G+ L INK Sbjct: 272 QALRAAGKLDDTIVIGVDATPDGLMAIKNG-ALDATVFQDGRSQARGAIDAALSGINKTP 330 Query: 297 DGEKVIQVPIDLYTK 311 +K+ +P +L TK Sbjct: 331 R-DKITWIPAELVTK 344 >UniRef50_A6TS00 Periplasmic sugar-binding protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TS00_ALKMQ Length = 337 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 19/217 (8%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES--TFVDTLVARNVDAIILSAVSENG 100 Y+ +RQG + AA+D +V ++E NA S E ++D + VD II S Sbjct: 62 YWKEIRQGAEQAARDHNV---VVEFNAPRFYSPEEELKYLDIAILSEVDGIITHVSSGED 118 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 + + +A GIPV+ T N + A VG G LG A + Sbjct: 119 FTTMINKAYYGGIPVV---TVENDDKISN--RAAFVGTN---GFLLGTEAGKLMVEATGG 170 Query: 161 QPKIAVINCEAFEVCVQ----RRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLI 215 + IA+I FE R GF LK P ++V + + A + + ++ Sbjct: 171 KANIAIIVSNNFEPDAASQNIRINGFLSELK-EYPDMEVVQTYTSRMGILSAEEITQSIL 229 Query: 216 ISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252 D++AI + TLG+V+ + +QN+ G+I + G Sbjct: 230 NGGKDIDAIFTMTSVDTLGSVQLIIDQNKVGEITMIG 266 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 15/195 (7%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI-NQKG 126 + + D++ + + ++ V VD II+ VS +G + V+ A + G+ V+ N I +Q Sbjct: 38 DGKNDVATQVSQIEQAVTLGVDGIIIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNA 97 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK--IAVINCEAFEVCVQRRKGFEE 184 D +V A D G AA + +D + ++ + V R KGF+ Sbjct: 98 ADTFVGA----DNESTG-----AALMKKVMEDLDGKGNIVELLGPMGSDGQVGRSKGFDS 148 Query: 185 VLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 VL + P +++A+ KA+++ E + S+ D+ A++ ++ G +GA +A++ Sbjct: 149 VL-AEYPDVKVIASDSADWDTAKALTLTENWLTSS-DIQAVVAQNDGMAVGAAQAIKEAG 206 Query: 244 QAGKIAVFGSDMTTE 258 KI V+G D T++ Sbjct: 207 LTDKIKVYGVDATSD 221 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 13/207 (6%) Query: 52 QDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEA 111 ++AAK LI T+AQG SK+ ++ L+AR VD I L+ G + + A A Sbjct: 53 EEAAKHKKTYDFLI-TDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAA 111 Query: 112 GIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK--IAVINC 169 IP+ + + + +VS +L D + G+++G ++A D + + Sbjct: 112 KIPIFLIDREAAGRPGEHFVS-FLGSDFIAQGRRVGE-----WLAKATDGKASIVELTGT 165 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIST-PDLNAIMGE 227 V + R KGF + + P +I+A Q A+ V E +I + D+ A+ Sbjct: 166 AGSSVAIDRAKGFRNAIAT-YPNMKIIATQTADFSRAAAVRVMENIIQAKGSDITAVYAH 224 Query: 228 SGGATLGAVKAVRNQN-QAGKIAVFGS 253 + LGA++A+++ + GK + GS Sbjct: 225 NDEMALGAIQALKSAGMKPGKDVMVGS 251 >UniRef50_A5FVU5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FVU5_ACICJ Length = 331 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 32/210 (15%) Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK---YVSAYLV 136 V+ + R+V+AI+ + +S V A+ A IPV +T ++ K + + ++ ++ Sbjct: 84 VEAFIQRHVNAIMFAPADAAAASSAVLAANHAHIPVFTIDTNVDMKTLKRAGGHIVEFVQ 143 Query: 137 GDPLEFGKKLGNAAADYFIANK------------IDQPKIAVINCEAFEVCVQRR-KGFE 183 + ++ G+ NAA + +K ID P F VQ R KGF+ Sbjct: 144 SNNVQLGE---NAAKEVIAYDKSALHGAPVKLGWIDYP---------FATSVQDRDKGFK 191 Query: 184 EVLKSRVPGAQIVA--NQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 +++ +V+ N +GT +S ++ + PD+N I + + LGA+ A+R Sbjct: 192 KIIDGD-KNIHVVSRLNGKGTT-PGGLSATAAMLSAHPDVNVIFDINAPSGLGAMDAIRA 249 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKA 271 N+ GK+AV G + + Q + N V KA Sbjct: 250 ANKVGKVAVIGLSGSQQAVQAICQNSVYKA 279 >UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribose) n=2 Tax=Agrobacterium RepID=B9K0T2_AGRVS Length = 329 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGD- 138 +D ++A+ DAI+++ + +++A++AGIP+I +T I G Y + GD Sbjct: 82 LDAVIAKKPDAILIAPTDTTQLVQPLKKAADAGIPMITVDTFI---GTGDYQTGAGDGDF 138 Query: 139 PLEF---GKKLGNAAADYFIANKI-DQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGA 193 PL + LG A +A I D+ K+ V N + QR +GF+ + ++ PG Sbjct: 139 PLSYIASDNVLGGEIAARSLALAIGDKGKVYVSNVKPGVSTTDQREQGFKSEM-AKHPGI 197 Query: 194 QIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252 ++ Q +KA S + + PDL + G + + LG+ V+ Q+G I V Sbjct: 198 TVLETQFNDNDANKAASQLQAVYARNPDLAGVFGANLFSGLGSANGVQQAGQSGTIKVVA 257 Query: 253 SDMTTEIAQELEN 265 D + L++ Sbjct: 258 FDAPGSVVDNLKS 270 >UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=9 Tax=Bacillales RepID=C6CRC9_PAESJ Length = 337 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 12/214 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ +G +DAA+ V V+ + Q D+ +E ++ ++AR+ I +SA+ + Sbjct: 57 YWKNGLKGFEDAAEALGVSVEY-RGSTQYDVQEEMMVLEQVIARSPAGIAVSAIDSEALN 115 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + +A EAGIPV+ ++ + Y+ + +K+ Sbjct: 116 PAINKAVEAGIPVVMFDADAPRSKAYSYIGTNNYNAGVTAARKMAELTG--------GTG 167 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGE--KLIISTPD 220 K+ VI +R +GFEE L+ P Q+V +G D+ IS + L+ D Sbjct: 168 KVGVITLPNQLNHQERTRGFEETLEKEFPDLQLVGIADGKG-DQMISEQKVRDLLSKFTD 226 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 L+ I +GA A+ N+ ++ + D Sbjct: 227 LSGIFVTEANGGVGAGNAILRLNKLDQVKIISFD 260 >UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HFZ1_GLUDA Length = 330 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 23/255 (9%) Query: 24 ARAAEKEMTIGAIY--LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 ARA + IG L + A +R G+ AK + +A DI K+++ VD Sbjct: 36 ARAEDSVHKIGVTVGSLGNPFFIAAIR-GITQQAKALGPTAPVQSVSADYDIGKQASQVD 94 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 + +A D ++ +AV ++ VRR ++G V+ ++ + G D ++ V Sbjct: 95 SFIAAGNDLVMFNAVDYQAAAPLVRRLHDSGATVVAFD--VGAPGADATITTNNV----- 147 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVA---N 198 K G + Y + + ++N R KG + V ++ PG ++++ + Sbjct: 148 ---KAGEISCQYIVDRLHGHGDVVIVNGPPVTALSDRVKGCQSVF-AKAPGIRLLSSTLD 203 Query: 199 QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVF--GSDMT 256 +G+ D ++VG+ +++ ++AI + LG A R QAG+ F D + Sbjct: 204 AKGS-RDGGLAVGQSVMVRFDKVDAIFAVNDPTALGVELAAR---QAGRHDFFLASVDGS 259 Query: 257 TEIAQELENNQVLKA 271 ++ QE+ L A Sbjct: 260 PDVEQEMRGGNTLIA 274 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 19/227 (8%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V++I ++ Q K+ ++ + + VD II++ + +R A + GI V+ + Sbjct: 64 VKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRP 123 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA-VINCEAF---EVCVQ 177 +N GV + + A + D L ++ G A F P+ A +IN + + Sbjct: 124 VN--GVPEVI-ANVAADNLIGAQRQGEAVEKLF-------PQGATIINLQGIPGDKTAND 173 Query: 178 RRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLI--ISTPDLNAIMGESGGATLG 234 R KG + L + VA Q D+ +SV E L+ ++ P + G A LG Sbjct: 174 RSKGVHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPPTVIVAGNDDSA-LG 232 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG 281 A +AV + GKIA+FG D +T+ + + + VL VD K G Sbjct: 233 AAQAVEARGLKGKIAIFGYDGSTDALKAVRDG-VLTGTVDQYPGKQG 278 >UniRef50_Q67RD5 Ribose ABC transporter ATP-binding protein n=7 Tax=Bacteria RepID=Q67RD5_SYMTH Length = 429 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 12/140 (8%) Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTVLDKA--ISVGEKLIISTPDLNAIMGESGGATLG 234 R +GF E + V G +VA+Q D+A ++V E ++ + PD+ A+ + LG Sbjct: 297 HRGQGFHEAVDG-VQGIDVVASQPAD-FDRAKGLTVMENILQAHPDIVAVFAHNDEMALG 354 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 A++A+ +A +I V G D T + + ++ + + A V K+MG LK +N Sbjct: 355 ALEAIEAAGKADQIKVVGFDATDDAVKAVQEGR-MAATVAQKPKEMGRLGVETALKHLN- 412 Query: 295 QADGEKV---IQVPIDLYTK 311 GEKV I VP++L TK Sbjct: 413 ---GEKVDEYIPVPLELVTK 429 >UniRef50_C0CRA5 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CRA5_9FIRM Length = 382 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 12/176 (6%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 NA D SK+ + + L+ DAI+++A++ +G + + A E GI V+ C N Sbjct: 113 NADNDQSKQISDIRDLITMGCDAIVVTAITADGLNDVLEEAEEEGIKVV---NCDNLSSS 169 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKGFEEVL 186 K S +V D +FGK G ++ D K+ +N A R G E+ L Sbjct: 170 TKLTSKVMVSD-YDFGKLCG----EWLGEQLPDGGKVIELNGTAGTSTDTNRAAGMEDGL 224 Query: 187 KSRVPGAQIVA--NQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 P ++I+A N + +V E+L+ + P+++ ++ + G T A++A Sbjct: 225 AEASPDSEIIASVNADWDYATAKTAV-EELLNTYPEIDGVLSQGGAMTQAAMEAFE 279 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 75/315 (23%), Positives = 138/315 (43%), Gaps = 38/315 (12%) Query: 12 LLMATLLGSALFARAAEKEMTIGA--IYLDTQGYYAGVRQGVQDAAK-DSSVQVQLIETN 68 L++ ++L L A K++ IG Y D + +RQ +Q K D +V Q + Sbjct: 6 LIVTSVLMCMLPASVLAKDIKIGVSMAYFD-DNFLTILRQSMQSKMKQDGNVSGQF--ED 62 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN--------T 120 A+GDI+++ ++ V++ VDAIIL+ V G ++ A A IP++ N Sbjct: 63 AKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVTLPA 122 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 + G D ++ L + L KL N + I ++ + E R + Sbjct: 123 GMAYVGSDSKLAGKLQMEELA---KLMNGKGNVMI----------LMGELSNEATRDRTR 169 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 G EEV ++ PG +I+ Q K A+ + ++ ++AI + +GA+ A+ Sbjct: 170 GVEEV-AAKYPGIKILDKQTAKWGRKEAVDITTDWALTGQQIDAIASNNDEMAIGAILAL 228 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + ++G + V G D T + + ++ + +V K G ++++ GE Sbjct: 229 KQAKKSG-VLVAGVDGTPDALEYIKKGDLALSVFQ-DAKGQGEGAVQTAIQLVK----GE 282 Query: 300 KV---IQVPIDLYTK 311 KV + +P L TK Sbjct: 283 KVESNVLIPYQLITK 297 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y++ + +G+ D ++ +V++ + +AQ D + + + T +A D II+ V Sbjct: 68 YFSKLVEGMTDLQEELNVELDV--QDAQDDTNTQINQIQTFIAEGCDLIIMMPVQLESLI 125 Query: 103 RTVRRASEAGIPVICYN---TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 +EA IP++ + + + K V + ++ D +E G+K G Sbjct: 126 PIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQLLG---- 181 Query: 160 DQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLI-- 215 D+ IA+I V R++G EE L PG +IVA Q +AI+V + + Sbjct: 182 DEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAITVTQNFLTR 241 Query: 216 ISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIA-VFGSDMTTEI 259 + +++AI+ + + LGAV A+++ ++ + V G D+ +E+ Sbjct: 242 FAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEV 286 >UniRef50_A7ZI69 Sugar ABC transporter, periplasmic sugar-binding protein n=46 Tax=Gammaproteobacteria RepID=A7ZI69_ECO24 Length = 327 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 58/273 (21%), Positives = 120/273 (43%), Gaps = 28/273 (10%) Query: 12 LLMATLLGSALFA---RAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETN 68 ++ + LLG+AL + +AAEK + + +D ++ + +GV +A K V + + Sbjct: 9 MVSSLLLGAALISAPLQAAEK-VVVNISKVDGMPWFNRMGEGVVEAGKAFGVNASQVGPS 67 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV- 127 + D ++ ++ L+AR V+AI + N ++A +AGI V+ N Q Sbjct: 68 ST-DAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGI-VVLTNESPGQPSAN 125 Query: 128 --------DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR 179 +K+ + Y+ K++G + P+ + + + Sbjct: 126 WDIEIIDNEKFAAEYVE----HMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHY 181 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 EV + R+P A+ V + T LD L+ + PDL A++ +GA +AV Sbjct: 182 PDMHEVTR-RMPVAESVDDSRRTTLD--------LMKTYPDLKAVVSFGSNGPIGAGRAV 232 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 + + K+AV+G + ++ A +++ + + + Sbjct: 233 KEKRAKNKVAVYGMMIPSQAASLIKSGDITEGI 265 >UniRef50_C0A5X1 LacI-family transcriptional regulator, ribose operon repressor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A5X1_9BACT Length = 333 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 5/98 (5%) Query: 33 IGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAI 91 IG I + Q ++A + +GV+D A+ + V L N D +KE ++D + A +VD I Sbjct: 66 IGLIIPNIQNPFFADLARGVEDRARQGNFAVLL--CNYDEDRAKEQFYLDVMRAESVDGI 123 Query: 92 ILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 I+ +S + ++ ASE G+PV+C + IN +DK Sbjct: 124 IIPPLSSTDPA-VLKFASE-GVPVVCVDRAINNATLDK 159 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 9/186 (4%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ V G Q AA V+ E ++ ++S++ + ++T ++ N DAI+L+ + Sbjct: 57 FWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETAISTNPDAIVLAPTVADALV 116 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + RA ++GIPVI ++ N D YVS +L D G++ + A + K P Sbjct: 117 PGIERAMDSGIPVIIIDSMAN---TDNYVS-FLGSDNYTIGQRSADELAKA-LEEKNGSP 171 Query: 163 --KIAVINCEAFEVCVQRR-KGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIST 218 K+A I + ++ R GF + ++ P ++V+ ++ + I++ L+ + Sbjct: 172 SGKVAAITYMSGVGSLEARISGFLDRIEEAYPDIEVVSVRDAMGQVGNTINITLDLLTAY 231 Query: 219 PDLNAI 224 PDL+ + Sbjct: 232 PDLDGL 237 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 7/169 (4%) Query: 35 AIYLDTQG--YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92 A+ + TQ Y+A +G Q A ++V + TN D ++++T V+ +A+ D I+ Sbjct: 33 ALLMPTQSVEYWALYIKGFQKEAAADGLKVDVKVTNY--DANEQATQVEQTLAQKPDVIV 90 Query: 93 LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152 L V + ++R+ +A IP++ N+ +QK +Y + + + G+ A Sbjct: 91 LVPVDSSAMVPSIRKIDQARIPLVISNSMPDQK-YSRYWKVFTGPNDISNGEAAAKAMIQ 149 Query: 153 YFIANKI-DQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 F D+ K+ VIN VQR +GF + LK PG ++V Q Sbjct: 150 GFKEKGYGDKGKVIVINGPMGTPPQVQRYQGFVDGLKKNAPGIEVVGAQ 198 >UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU6_PAESJ Length = 330 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/207 (22%), Positives = 94/207 (45%), Gaps = 26/207 (12%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ V+QG ++AA+ ++++ + A+ D+ + ++ +A VD II + EN + Sbjct: 61 YWRLVQQGAREAAQQKGIELEYLGP-ARADVKEHIKILEMAIASKVDGIITQGLEENEFT 119 Query: 103 RTVRRASEAGIPVIC------YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIA 156 + A+ GIP+I ++ + G D Y + Y+ G L IA Sbjct: 120 PIINEAARMGIPIITVDSDAPHSKRVAYVGTDNYAAGYMAGREL--------------IA 165 Query: 157 NKIDQPKIAVINCEAFEVCVQ--RRKGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEK 213 + ++A+I +F Q R +GF++ +K+ PG I+ E + ++ + Sbjct: 166 KSAGRAEVALITG-SFTASNQKDRVRGFKDAVKT-YPGIHIIDIAESNISRIQSAASAYT 223 Query: 214 LIISTPDLNAIMGESGGATLGAVKAVR 240 L P+++ +G S LG + ++ Sbjct: 224 LAQKYPEIDTFVGTSALDGLGIAQMLK 250 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 8/111 (7%) Query: 13 LMATLLGSALFA-RAAEKEMTIG---AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETN 68 L ++L SA+FA A ++ IG A++ D + +R G++ AAKD SV VQ+ + Sbjct: 4 LALSVLASAMFAGSVAAADLKIGVSMAVFDDN--FLTALRNGIETAAKDKSVDVQI--ED 59 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + ++ + + +A VDAII++ V + + A AGIP+I N Sbjct: 60 GKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVN 110 >UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein precursor n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF79F Length = 333 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSS 59 M T R+ N + +LG+ A A+ E IG IY + +R+ + + S Sbjct: 1 MKTMKRSLLNAFVYTLMLGAN--ASYAQSEPRIGVTIYKYDDNFMMLMRKEMNKEMANFS 58 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 ++ +AQ K+ ++TL+ V+ + ++ V N S V +A + +PV+ +N Sbjct: 59 -HLKWFMNDAQNSQVKQLKQIETLLKHQVNVLAVNIVHANESKTIVEKAKLSNVPVVFFN 117 Query: 120 TCINQKGVDKYVSAYLV-GDPLEFGKKLGNAAADY------FIANKIDQPKIAVINCEAF 172 + + ++ Y AY V DP E G+ G A F NK + + ++ E Sbjct: 118 RSSDNQALESYDKAYFVSSDPKEAGRIQGELIAKVWKSNPDFDLNKDGKLQFVLLKGEPS 177 Query: 173 EVCVQRRKGFEEVL 186 +V +R + E L Sbjct: 178 DVSAERSQAVVESL 191 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 102/207 (49%), Gaps = 16/207 (7%) Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V+++ T+A GD +K ++ V+ L+++NVDA+I+S + + AG P I Sbjct: 177 VEVVSTDAGGDAAKLASNVEDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAI----L 232 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ-PKIAVINCEAFE--VCVQR 178 +++K ++++ D G++ G F+A K+ + +A+I + + + R Sbjct: 233 VDRKFRSGTYASWIGPDNEAIGRQDGE-----FLAAKLGKDATVALIKGGPADNSIGLAR 287 Query: 179 RKGFEEVLKSRVPGAQIVANQE--GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 G ++ L + G ++V + D ++V E L+ S DL+A+ E+ LGA Sbjct: 288 TTGVKKALDA--AGIRMVEGPDYGNWASDGGLTVMESLLASHKDLDAVFCENDAMCLGAQ 345 Query: 237 KAVRNQNQAGKIAVFGSDMTTEIAQEL 263 +AV++ + +I + G D E Q + Sbjct: 346 RAVKDAGREKEIVLAGVDGQAEALQAI 372 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 21/296 (7%) Query: 30 EMTIGAIYLDTQGYYAG-VRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 +M IG + D + G + GVQ A + V+++ +A+ D + V+ L+A+ V Sbjct: 45 KMVIGFAHPDFNDMFLGFLLAGVQ-AYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQGV 103 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK-KLG 147 DAI+ V + V RA +AG+PV+ IN+ V++ AY+ D L+ G ++ Sbjct: 104 DAIMAIPVDLIATEFIVDRAQQAGVPVV----LINRDSVERE-DAYVGSDSLQAGTIQME 158 Query: 148 NAAADYFIANKIDQPKIAVINCEAFEVC-VQRRKGFEEVLKSRVPGAQIV-ANQEGTVLD 205 AA + K KIA++N + + R G ++V+ + PG ++V G + Sbjct: 159 EVAA--VLKGK---GKIAIMNGQMGHTAQINRTLGNKQVV-DQYPGMEVVIEGTGGWSRE 212 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 K + E I S +A++ + +GA+ A ++ G D T + + Sbjct: 213 KGKELMESWIESGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSK 272 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK---TEDGKQW 318 ++ +V K G Q +K + K EK+ +P + TK E K+W Sbjct: 273 GKLTISVFQ-DAKGQGQTGLEQAIK-LAKGESAEKMTNIPYETITKRNVDEYKKKW 326 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 106/218 (48%), Gaps = 12/218 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 + G+ + ++ + + +VQL+ +A D +K+ + ++T ++ N +AI++ S +G + Sbjct: 59 FMVGMAENFKEVGEAAGYEVQLM--DADLDATKQVSQIETAISENAEAILVEPCSVDGLT 116 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 ++ A +AGIPV + N V++ + D ++ G + I + + Sbjct: 117 TGLKEAHDAGIPVFVIH---NNVSATDLVTSLIHVDV----RQGGELKMEQVIKDCGEDA 169 Query: 163 KIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD 220 KIA++ + Q G++ VL+ + P ++V G A + E + S + Sbjct: 170 KIAIMTGTLGQDTTNQICGGYDAVLE-KYPNVEVVFEGAGNWGATDAAPLAENWLASGKE 228 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 ++AI+ + G LG V +++ ++ +I V+G D T E Sbjct: 229 IDAIVCNNDGMALGVVSVLKSAGKSEQIKVYGLDATNE 266 >UniRef50_UPI0001973330 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973330 Length = 325 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 11/214 (5%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ V G AA + +V + ++ D + ++ + V DA+++SAV N ++ Sbjct: 49 FFQSVFAGAGAAATEYNVSLITEGPESEEDYATQNEMIYKAVENGADALVISAVDFNKNA 108 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG-DPLEFGKKLGNAAADYFIANKIDQ 161 V A+ GIPV+ ++ +N V + +G D E G+ AA D + Sbjct: 109 EAVDWAAAKGIPVVVIDSDVNSSAV-----KFRIGTDNEEAGRMAARAALD----GTDGE 159 Query: 162 PKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPD 220 I ++N E QR +GF E K +IV + +D + + L+ + P+ Sbjct: 160 LFIGIVNFDENTANGQQREQGFREEAKKDSRVKEIVTINVPSAIDDTRAATKGLLSTHPE 219 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 +N I + +LG A+R+ N+ I+V D Sbjct: 220 INVITTFNEWTSLGVGWAIRDLNKKDDISVVAFD 253 >UniRef50_B8I3W5 Periplasmic sugar-binding protein n=2 Tax=Clostridium RepID=B8I3W5_CLOCE Length = 352 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 127/287 (44%), Gaps = 41/287 (14%) Query: 5 MRTTRNLLLMATLLGSALFARAAEK-------EMTIG--AIYLDTQGYYAGVRQGVQDAA 55 ++ + LL+A+L+ L A + K ++TIG L + ++ + A Sbjct: 3 IKQLKIFLLLASLITMVLLAGCSYKNPIDKPDKITIGLSMATLQEERWHRDIEAL---RA 59 Query: 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 K + +++ NA +I+ + + V +L+++++D +++ S + V+ A GI V Sbjct: 60 KAQAKGAEILFRNANNNINDQISQVKSLLSKDIDILVIVPQDAEKSQQAVQLARNKGIRV 119 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV- 174 ICY+ I D YVS D + G+ + + + +K+ + +IN + Sbjct: 120 ICYDRLIKNSNTDFYVSF----DNIRVGEYMAS-----LMVSKVPKGNYILINGAKTDYN 170 Query: 175 CVQRRKGFEEVL-KSRVPGA-----QIVANQEGT-----VLDKAISVGEKLIISTPDLNA 223 KGF+ +L K G+ ++ AN +DKA+ G+K ++A Sbjct: 171 SFMYNKGFKNILGKYLYEGSIKIVDEVWANDWKPEDAFKCVDKALRDGKK-------IDA 223 Query: 224 IMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL-ENNQVL 269 I+ + A+KA+ + AGK+ V G D Q + E Q+L Sbjct: 224 IIAANDSLAGAAIKALSQRRLAGKVPVAGHDADISGCQRVAEGTQLL 270 >UniRef50_C2L0C1 Putative uncharacterized protein n=1 Tax=Oribacterium sinus F0268 RepID=C2L0C1_9FIRM Length = 654 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 10/224 (4%) Query: 44 YAGVRQ-GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 +A + Q G++D + +++ I +A D + ++++ +N DA+I V + +S Sbjct: 373 WAKLHQKGIRDELEKYGIEIISI-MDAHFDPMLQKIQLESIQHQNPDAVIAIPVDDIETS 431 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDK--YVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 S+ ++ N KG DK YVS V D E G +G DY + NK Sbjct: 432 SAFEELSKHTRVILLSNI---PKGFDKNNYVSCISV-DEHENGYNIGKMIGDY-LENKTI 486 Query: 161 QPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPD 220 + + + F +R + L + P +VA + ++ S+ L+ + P+ Sbjct: 487 KNTALITHGANFYGTSERDSMVLKTLLTHYPSVNVVAQKNFYSIENTYSICSDLVHAHPE 546 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 ++++ L A+KA+ N+ IAVF +D+ EIA++++ Sbjct: 547 ISSLYVSWDQPALLAIKALDKLNRKD-IAVFTTDLDYEIAEKMK 589 >UniRef50_C0BEZ3 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BEZ3_9FIRM Length = 339 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 11/174 (6%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 + + D ++ +D + VDA++ SA+ ++ + RA++AGI ++ ++ +N + V Sbjct: 86 DGEEDYEAQNEMIDRAIREQVDALLFSAIDFEKNAEAIDRAAKAGIRIVVVDSPVNSEAV 145 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEE-V 185 + Y+ D E G A + + N + I ++N + + E R KGF + V Sbjct: 146 ECYIGT----DNYE----AGCMAGEEVLGNPAENLNIGIVNFDKSTENGQLREKGFRDTV 197 Query: 186 LKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 LK N + T+ D A E++++ P +N I+ + TLG AV Sbjct: 198 LKDDRVNITASINVKSTITD-AREGTERMLLDNPQINVIVTFNEWTTLGVGDAV 250 >UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridium phytofermentans ISDg RepID=A9KIC5_CLOPH Length = 325 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/290 (20%), Positives = 131/290 (45%), Gaps = 16/290 (5%) Query: 12 LLMATLLGSALFARAAEKE-----MTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIE 66 +L+ L ++ R EK + I + D+ +++ + +G Q AAK+ ++++ + Sbjct: 13 MLLTLSLAFFIYIRTLEKPKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMA 72 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 + D ++ ++ + R D I+L+A + + +AGI +I ++ + Q Sbjct: 73 PEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDI 132 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEV 185 D V+ D ++ G ++G + + K KI VI+ + + + R +G + Sbjct: 133 ADITVAT----DNIQAGIRIGAVTKN--LVRK--SGKIGVISFVKNSKTAMDREEGLKIG 184 Query: 186 LKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 L + + + DKA +L+ PD++ ++G + + GA +A+++ + Sbjct: 185 LSDDSNKIEAIYYCDSN-YDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLE 243 Query: 246 GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 K+ + D + E Q LE + +A+V +G + LK++ K+ Sbjct: 244 AKVKLVCIDSSMEQIQYLEEG-IFEAMVVQKPFNIGYLGVEKALKLLKKE 292 >UniRef50_B9KPX1 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B9KPX1_RHOSK Length = 321 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 17/273 (6%) Query: 28 EKEMTIG-AIYLDTQGYYAGVRQGVQDAAK---DSSVQVQLIETNAQGDISKESTFVDTL 83 EK TIG AI T G+ G+ QD K Q+ + A G+ K ++ + Sbjct: 29 EKAGTIGVAIPSATHGFMGGLNFHAQDTIKRLQQVYPQLDFVLATA-GNAGKMVNDIEDM 87 Query: 84 VA-RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 VA RN+ A+++ + V+ EAGI V + ++ +G++ Y+ GD F Sbjct: 88 VATRNISALVVLPFESEPLTSPVQAVKEAGIWVTVVDRGLSVEGIEDL---YVAGDNPGF 144 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 G+ A +YF + KI V+ + +R + F + G +++ Q G Sbjct: 145 GR----VAGEYFAQHLESGKKIVVLRGIPTTLDNERVEAFTAAIDGS--GIEVLDMQHGN 198 Query: 203 V-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 D A +V + + P ++A+ +GA++A+ + ++ V G EI + Sbjct: 199 WNRDDAFNVMQDFLSKYPQIDAVWAADDDMAIGAMEAIAQAGRTEEMWVMGGAGMKEIIR 258 Query: 262 EL-ENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 + + + L A V ++ A+ LK+++ Sbjct: 259 RIADGDPQLPANVTYPPAQISTAIELTALKLVS 291 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 28/253 (11%) Query: 1 MPTKMRTTRNLLLMATL-LGSALFARAAEKEMTIGAIYLDTQGYYAGVRQ-GVQDAAKDS 58 M R LL+ A L + +++ + A +K++T+G + + + V+ +AKD+ Sbjct: 1 MKVATRLIAGLLVGAALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDA 60 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 + ++ ++AQ + + + +A+ VD I S V E+G + A A IPVI Sbjct: 61 GINLKF--SDAQQKQENQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILT 118 Query: 119 NTCINQKGVDKYVSAYLVG-DPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV- 176 + I+ K YV+ ++G D LE G++ G + + + + IN + V Sbjct: 119 DRSIDVKDTSLYVT--MIGSDFLEEGRRAGRWLEERY------KNEAGPINIAELQGTVG 170 Query: 177 -----QRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTP-----DLNAIMG 226 R G EV+K+ P +I+A+Q G D ++ G++++ + +N + Sbjct: 171 SAPANDRHAGLMEVIKND-PKFKIIASQSG---DFTLAGGKQVMEAFAKTYGKQINVVYA 226 Query: 227 ESGGATLGAVKAV 239 + LGA++A+ Sbjct: 227 HNDDMALGAIQAM 239 >UniRef50_B6FKZ7 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKZ7_9CLOT Length = 344 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 6/196 (3%) Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 LI +A+ D S + + + + ++VD II S V E+G + A A IPVI + +N Sbjct: 71 LIFEDARQDQSNQIMAIRSFIQQDVDYIIFSPVVEDGWDTVLEEAKRARIPVIVIDRMVN 130 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVC-VQRRKGF 182 K D +A++ D G+K A Y A ++++ I I + R + Sbjct: 131 VKD-DSLYTAWVGSDFYMQGEKACAALKAYVDAQEMEKVNIVHIQGTLGATAQIARTQAL 189 Query: 183 EEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 E SR G IVA + G + A + +++ D++ + E+ T GA++A++ Sbjct: 190 TEA-ASRY-GWNIVAQESGDYTEAGAYEIMNRVLNEYDDIDFVYCENDNETFGALEAIKK 247 Query: 242 Q-NQAGKIAVFGSDMT 256 + + G I + D T Sbjct: 248 KYSNGGGIKLISFDAT 263 >UniRef50_C1Q8L3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1Q8L3_9SPIR Length = 340 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 18/184 (9%) Query: 11 LLLMATLLG-SALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETN 68 LLL TL+G + + + K+ I + Q ++ VR G + AAK + V++ + Sbjct: 5 LLLATTLIGLTVMLSSCGNKDPYIAVVSKGFQHKFWVTVRDGAEAAAKQNGVKISFVGPE 64 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI------ 122 + D + +D+ + +N DAI +AV+ + + + ++R E IP+I +++ I Sbjct: 65 TESDSKIQQDLLDSEINKNPDAIAFAAVTGDFTEQ-IKRIKEKNIPLIGFDSGILPDQAQ 123 Query: 123 ----NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 D +A +V D + K AA F ++ ++ KIAV+ + + + R Sbjct: 124 GAVLATASTDNRAAAAIVADKMFEALKTRIAA---FTSD--NKAKIAVLQLDNSDTGIGR 178 Query: 179 RKGF 182 +GF Sbjct: 179 AEGF 182 >UniRef50_A4LGF7 ABC transporter, substrate-binding protein n=11 Tax=Proteobacteria RepID=A4LGF7_BURPS Length = 332 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 32/279 (11%) Query: 7 TTRNLLLMATLLGSALFARAA--EKEMTIGAIYL----DTQGYYAGVRQGVQDAAKDSSV 60 TT+ L + T +G A+ A +A + E + Y+ + ++ V++G+ +A Sbjct: 5 TTKPALTLVTAIGLAVMASSALAQNEQPLKFDYIIHSSASNTFWQAVKKGMDEACTQVKA 64 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 Q Q+I T +G +S++++ + +A DAI + V + ++ A G+ V+ N Sbjct: 65 QCQMIFTQTEGSVSEQASNLQAALAGKPDAIATTIVDDKAIEPILKEARNKGVTVLAANV 124 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ--PKIAVIN------CEAF 172 + KG V +G G AA Y +A K+ + PK +N Sbjct: 125 D-SSKGAKGSVRQAFIGQ--------GFDAAGYALAQKLAEKFPKSGPVNVLVGISAPGQ 175 Query: 173 EVCVQRRKG---FEEVLKSRVPGAQIVANQEGTVLDKAIS---VGEKLIISTPDLNAIMG 226 QR G F K+ PG +I + + D A++ VG L + PD A Sbjct: 176 NWSEQRGAGVMRFMADYKAANPGRKITWKRIDSGTDLAVTAERVGAYL-NANPDTTAYF- 233 Query: 227 ESGGATLGAVKAVRNQN-QAGKIAVFGSDMTTEIAQELE 264 ++G G KA++++ GKI + G D+ ++ ++ Sbjct: 234 DTGFWHAGVAKALKDRGVPPGKILLGGFDIVPDVLNSMK 272 >UniRef50_B0P6G5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6G5_9FIRM Length = 322 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 27/283 (9%) Query: 3 TKMRTTRNLLLMATL-LGSALFARAA---EKEMTIGAIYLDTQGY----YAGVRQGVQDA 54 TK R LLL LG L A A E I I + +G + +RQG A Sbjct: 2 TKRRALAFLLLFCMFALGFLLLAFDAFGKEPPPEIYRISVIVRGRAGDRWESIRQGADQA 61 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 A + +V + I + + D +++ + + + DAI+LSA + V +A+E P Sbjct: 62 ASEMNVDLSFITLSGENDSAEQISLLQREIDAGADAIVLSASDSAALAAPVEQAAEKA-P 120 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKL---GNAAADYFIANKIDQPKIAVINCEA 171 VIC T + V Y+SA G L+ G+++ GNA + + + + C + Sbjct: 121 VICIETGVYSGSVSSYISADNYGMGLQLGEEIIASGNARKRLVVVD-------SSLQCAS 173 Query: 172 FEVCVQRRKGFEEVLKSRVPGA-QIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGG 230 QRR G VL R+ G ++ +G + + + ++ T D+ + S Sbjct: 174 ---VAQRRAGLMHVL-GRIGGEIEVWTLPDGDPAEASRMLASRIGKKTADVIVTLDTS-- 227 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 A +AV + QA + +FG T +IA +EN+ V VV Sbjct: 228 ALELTAQAVSDM-QAHYLDLFGIGSTGKIASFIENDIVTATVV 269 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 15/218 (6%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQG-DISKESTFVDTLVARNVDAIILSAVSENGS 101 Y+ VR+G AAK V V E A G D++ + V+ V D IIL+A + Sbjct: 57 YWLAVREGADAAAKKFGVSVAF-EAPASGTDLAGQIGMVNNAVTGGTDGIILAAQNPQAL 115 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 + V+ A IPV+ ++ ++ D +++ VG K AD+ + K Q Sbjct: 116 LKPVKSALAHHIPVVTVDSGLSPNISDCFLATSNVGAAAALAKY----TADHLMGGK-GQ 170 Query: 162 PKIAVINCEAFEVCVQRRKGFEEVLKS----RVPGAQIVANQEGTVLDKAISVGEKLIIS 217 I N A + R KGF +KS + G +N + + + + ++ Sbjct: 171 YAIVDFNHTA-STGIARPKGFMLGMKSYPHIKKMGPIQYSNND---VSAGLRIATTMLTQ 226 Query: 218 TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDM 255 P L I G + A LG +AV+ + K+ F +D+ Sbjct: 227 YPHLKVIFGANDRAALGPAEAVQRAHAKVKVVGFDADL 264 >UniRef50_A5CP31 Putative sugar ABC transporter, solute-binding protein n=1 Tax=Clavibacter michiganensis subsp. michiganensis NCPPB 382 RepID=A5CP31_CLAM3 Length = 325 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK-- 125 N+ D +K+S +D VA+ VD I++S + +G +V +A AGIPV+ N+ I + Sbjct: 78 NSDPDPAKQSQLIDNAVAQEVDGIVVSMANPDGVKDSVEKAVAAGIPVVTINSGIERSAE 137 Query: 126 -GVDKYV--SAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR-KG 181 G ++ S + G+ + GK+LG A + + VI EA V ++ R Sbjct: 138 FGALTHIGQSETVAGEAV--GKRLGEAGL---------KNALCVIQ-EAGNVGLEERCSS 185 Query: 182 FEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 ++ Q+ + D ++ KL + P ++ ++ G L AV AV Sbjct: 186 AASAFSGQMANLQVDGTND---ADVKATIKSKL-QADPSIDGVLTLGGQYALDAVGAVEE 241 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 + KI F D++ ++ +E +++L AV Sbjct: 242 SGSSAKIGTF--DLSEDVVSAVEADKILFAV 270 >UniRef50_UPI0001C31C00 xylose binding protein transport system n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C00 Length = 373 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 14/209 (6%) Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 A K+ + ++I NA+GD +++ T ++ + D I++S + E + +A +A I Sbjct: 74 AVKEIAPGAKVIANNAEGDSARQVTQTESAITNGADVIVVSPLDEAAGAAIADKAEQARI 133 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AF 172 PV+ Y+ + VD YVS +++G +Y D IA IN + + Sbjct: 134 PVVSYDGLLTDGTVDFYVSFD--------NERVGELQGEYLARELRDGASIAFINGDQSI 185 Query: 173 EVCVQRRKGFEEVLKSRVPGAQIVANQEGTV----LDKAISVGEKLIISTPD-LNAIMGE 227 Q + G L + ++ EG K ++ E+ + D ++ ++ Sbjct: 186 APGRQFKAGAHRALDPLIESGRLRLAYEGDAQQFDPQKGRTLMEQALTRLNDRVDGVIAA 245 Query: 228 SGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 + G G V A+ +N GK+ V G D T Sbjct: 246 NDGLAGGVVNALEPRNLTGKVLVTGQDAT 274 >UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=Clostridium RepID=A6M1Q7_CLOB8 Length = 361 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 128/283 (45%), Gaps = 36/283 (12%) Query: 29 KEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQ----VQLIETNAQGDISKESTFVDTL 83 KE+ IG +Y + + + + ++D AK+ Q + + +A+G++ +S VD Sbjct: 46 KEIKIGVTLYKQDDAFISEISKNIEDIAKEKENQGKYKIIVNVADAKGNLINQSNQVDKF 105 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG-DPLEF 142 VA+N D I ++ V +S + +A A IP++ +N ++ ++++ Y VG D + Sbjct: 106 VAQNYDVICVNMVDRTAASMIIDKAKSANIPIVFFNREPVEEDMERWNKLYYVGADAQQS 165 Query: 143 GKKLGNAAADYF-----IANKIDQPKIAVINCEA----------FEVCVQ--RRKGFE-E 184 G+ N + + + +K KI + E E C++ + G E E Sbjct: 166 GEMQANIIINAYKKDNKMVDKNGDGKIQYVMLEGEQGHQDSLIRTEYCIKTITQNGIELE 225 Query: 185 VLKSRVPGAQIVANQEGTVLDKAI-SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 L Q + Q T + + I + G+K+ + + + LGA+ A+ + N Sbjct: 226 KLADDTANWQ--SAQATTKMSQWIKNFGDKIEV-------VFSNNDEMALGAINAINDAN 276 Query: 244 QAGKIA-VFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVF 285 GK V G D + + ++N ++ +++ S KK NA+F Sbjct: 277 IGGKKPLVVGIDGLPKALEAVKNGSMIGTILNDS-KKQANAIF 318 >UniRef50_C7GDR0 Transcriptional regulator, LacI family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDR0_9FIRM Length = 339 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 118/281 (41%), Gaps = 29/281 (10%) Query: 7 TTRNLLLMATLL-------GSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDS 58 T R +L +A LL G AL A+ +K++ IG + + ++ V G++ ++ Sbjct: 32 TERKVLEIAKLLDYQPNKAGIALAAQ--KKKLKIGVLLFGAENPFFDEVMDGLRQKLEEL 89 Query: 59 SVQ-VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 S+ +IE D+ + +D L+ + +ILS ++ + E GIP I Sbjct: 90 SIYGCTVIERRISFDLQSQLQTIDELLKEEIHGLILSPYNDPAIQEKIDLLWENGIPCIT 149 Query: 118 YNTCINQKGVDKYV-SAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV 176 NT + YV S Y K G AA D + ++ +C Sbjct: 150 INTDMPDSKRIAYVGSDY---------HKCGQTAAGLLHLFSGDYASVGIVTGSHNVLCH 200 Query: 177 QRR-KGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLG 234 + R GF L ++ P +IV E D K+ V L+ PDL+A+ + G G Sbjct: 201 EERISGFTSHLHTKHPNIRIVDVVENGDDDYKSYEVVSDLLDRHPDLSALYFTAAG-VYG 259 Query: 235 AVKAVRNQN--QAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 +AV N + + KI F + ++T E+ N V+ A + Sbjct: 260 GCRAVLNASLQRPLKIITFDAVLST---CEMIRNGVISATI 297 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/306 (22%), Positives = 137/306 (44%), Gaps = 23/306 (7%) Query: 12 LLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQG 71 +L AT+L L A ++ +G Y A + + +Q+ A+ V L ++ Sbjct: 16 VLFATVL--CLAGSTALADLRLGVSVGQFDNYIAYLVRAMQERARQVPGGVTLQVEDSGS 73 Query: 72 DISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV 131 D+ ++ V++ +A+ VDAII++ + RA+ AGIP++ N+ + V ++ Sbjct: 74 DVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNS---RPEVREFP 130 Query: 132 SAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRV 190 + + E ++LG +Y + +A++ A + +R G ++VL +R Sbjct: 131 AGVVFVGTDE--RRLGQMQMEYLAEKMGGKGDLAILLGRLAHDDTRKRTAGVKDVL-ARY 187 Query: 191 PGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK-- 247 P ++V Q G DK + + + S + +A++ + +GA A+R QAG+ Sbjct: 188 PQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFDAVVANNDEMGIGAAMALR---QAGRRE 244 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK---QADGEKVIQV 304 ++V G D T + + Q L + MG L+++ K Q D + + Sbjct: 245 VSVGGIDGTPDGLAAIARGQ-LAVTLLRDPVAMGEEAVDVALRLVRKDVVQGD----VWI 299 Query: 305 PIDLYT 310 P+ L T Sbjct: 300 PVHLIT 305 >UniRef50_C0C0Q7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Q7_9CLOT Length = 341 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/253 (22%), Positives = 116/253 (45%), Gaps = 22/253 (8%) Query: 43 YYAGVRQGVQDAAKDS--SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 Y+AGV +++ K+ +Q NA +S+ V+ + D I++ + Sbjct: 57 YWAGVMGKLEELLKEKGWDYTLQDCSDNAGTQVSQ----VENFITSGCDMIMVHPSDADA 112 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI- 159 ++A + GI V+C++ + +A + D G ++G A+ + + Sbjct: 113 LETVCQQAMDEGIKVMCWDDPMEN------TTANWILDNTALGNEIGKTASAFINEHYTA 166 Query: 160 DQP-KIAVINCEAFEVCVQRRKGFEEVLKSRVPGA--QIVANQEGTVLDKAISVGEKLII 216 D+P ++ VI + +V ++R G +E L+ +IVA +G ++A + E ++ Sbjct: 167 DKPAEVCVIGKPSTKVLLERANGIKEGLEENCDKGNYKIVAEVDGLEANEAQTNVESVLQ 226 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQ-NQAGKI----AVFGSDMTTEIAQELE-NNQVLK 270 + PD +G GA +G+ +A+ + AGKI V +D+T + + L+ ++ ++ Sbjct: 227 ANPDCTVFVGVGAGAMIGSNEALLQKFGGAGKIPENVGVITTDVTMQQLESLQAGDEAVR 286 Query: 271 AVVDISGKKMGNA 283 A+V G A Sbjct: 287 AIVGFEGSSTDTA 299 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 28/247 (11%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 T ++ V G A+++ V V + D+ + V + VA+ V I+L+ + Sbjct: 51 THEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVSGIVLAPLDAT 110 Query: 100 GSSRTVRRASEAGIPVICYNT------CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADY 153 VR A +A IPV+ +++ ++ D + L G+ L GK +G Sbjct: 111 ALRAPVRAARQAKIPVVVFDSDLASDDHVSFVATDNEAAGRLAGEHL--GKAIG------ 162 Query: 154 FIANKIDQPKIAVINCEAFEVCVQRR-KGFEEVLKSRVPGAQIVANQE--GTVLDKAISV 210 + K+ V+ + Q R KGF + +++ +PG + + + G + A Sbjct: 163 ------EDGKVVVLRYQEGSASTQHREKGFLDAVRA-MPGVTVASENQYGGATTESAFHK 215 Query: 211 GEKLIISTP----DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 E L+++ + + + T G ++A+R N A K+ G D + ++ L Sbjct: 216 SESLLLAQRAAEGAIAGVFTPNESTTFGMLQALRKTNVARKVKFVGFDASEKLLGALREG 275 Query: 267 QVLKAVV 273 + VV Sbjct: 276 DIEALVV 282 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 8/196 (4%) Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 Q+I + D K++ + LV R VDAI L+ V + A +A IPVI ++ + Sbjct: 76 QMITLDPALDQKKQNEQIKQLVKRKVDAIFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQV 135 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 + + V+ +V D K G A + K DQ I ++ A V R GF Sbjct: 136 YRSDL---VAMTIVSD----NYKAGVLCAKEMMKQK-DQANIVLLTHNAARSAVDRINGF 187 Query: 183 EEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + +K+ + + +++A+ +K+I +++ +MG + A +GA+ A+ ++ Sbjct: 188 LDTIKNNKNYKILASADTQGQIERALPKVDKIIEEYQNIDVVMGLNDPAAMGALAALDSK 247 Query: 243 NQAGKIAVFGSDMTTE 258 + V+G D + E Sbjct: 248 GAREGVLVYGIDGSPE 263 >UniRef50_C1XTQ0 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Bacteria RepID=C1XTQ0_9DEIN Length = 312 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 130/284 (45%), Gaps = 22/284 (7%) Query: 27 AEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A+K++TI I L Y+ QG ++AA + + + +G + K+ ++ + Sbjct: 8 AQKQITIAMIPKLVGIDYFNATEQGAKEAAAELGNIRLIYQGPTEGRVDKQIELIENFIT 67 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYL-VGDPL--EF 142 VD I ++A + + +A +AGI V+ ++ N + V + + +G L E Sbjct: 68 AKVDVISVAANDPVAIAPVLEKARKAGIKVVTWDADANVRDVFCNQATFAGIGKALVDEM 127 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIV---ANQ 199 +++G + + + P N A+ +++ VL PG ++V ++ Sbjct: 128 ARQVGKEGEVAIVTSSLTAP-----NQNAWIAEMKK------VLAKDYPGLKVVDTKPSE 176 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 E L A V + L+ + P+L + S A GA +AV+ +AGK+AV G ++ Sbjct: 177 EDQQL--AFRVTQDLLKAYPNLKGVWALSSVAFPGAAEAVQQAGKAGKVAVVGLSTPKQM 234 Query: 260 AQELENNQVLKAVVDISGKKMGN-AVFAQTLKVINKQADGEKVI 302 ++ V+K+VV + +G +V+A V +G+K++ Sbjct: 235 KPFMKAG-VIKSVVLWNPIDLGYLSVYAAKQLVEKGLKEGDKIV 277 >UniRef50_B1VWK1 Putative ABC transporter solute-binding protein n=7 Tax=Streptomyces RepID=B1VWK1_STRGG Length = 370 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 NA+ D + ++ VDT++ VDA+I+ AV + ++++A +AGIPV+ ++ Sbjct: 85 NAKQDANAQAQHVDTMITNKVDALIVGAVDSKAIANSIKKAKDAGIPVVAFDRL-----A 139 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV-CVQRRKGFEEVL 186 + + AY D E G+ G A + + +K D I ++N + +KG + VL Sbjct: 140 EGPIDAYTSFDNEEVGRAQGTALLE-ALGDKADGGTIVMMNGAITDPNAALFKKGAKSVL 198 Query: 187 KSRV 190 +V Sbjct: 199 DGKV 202 >UniRef50_A9D050 RbsB protein n=2 Tax=Alphaproteobacteria RepID=A9D050_9RHIZ Length = 344 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/271 (21%), Positives = 120/271 (44%), Gaps = 12/271 (4%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 YY + +G++ A + V+V ++ + DI+ + + ++ ++VDAII E ++ Sbjct: 63 YYIAIGEGIKAVAAEEGVEVFMLAPQSGADINGQMGMIQDVLTQDVDAIIFGTHDEFAAA 122 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG-NAAADYFIANKIDQ 161 +++A + G+ V+ N+ I + +VG + ++ G + A++ I + Sbjct: 123 PLLKQAVDKGMAVVMINSDIANFPTPIHG---VVG----YSQRNGTHKLAEWAIETYGSK 175 Query: 162 P-KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPD 220 P + +I + +R GF + +K +V+ ++ + G ++ S PD Sbjct: 176 PLNVGIIEGQPGYHSTERVGGFLDGIKGNENFDVVVSIDGKWNVEGGNTAGMDILQSHPD 235 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 L+ I + +GA A + ++ I + G+D T +E+ V A V+ S M Sbjct: 236 LDMIFAANDYMIIGASFAAKALGRS-DIVLLGNDGDTSGLEEIAAGSV-TATVNTSPFLM 293 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 G A T+ +N G I+ P + K Sbjct: 294 GKAAMHATIDALNGTYPG-GWIETPTSIEDK 323 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 28/219 (12%) Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 A+ + +++ T+AQG + K+ + V+ LV R V +I++ G V AS G+ Sbjct: 59 ARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVKLLIINPADSEGLVNAVNNASANGVK 118 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP--KIAVINCEAF 172 V+ ++ +N + +V+ ++ + A +++ ++ KIA+++ E Sbjct: 119 VVVIDSTLNPRA--NFVT------QVQSSNSINGALVGHWVIEEVGNKSLKIALLSGEKG 170 Query: 173 EVCVQRRK-----GFEEVLKSRVPGAQIVA--------NQEGTVLDKAISVGEKLIISTP 219 Q R+ G E + A + N EG + KA+ E L+++ Sbjct: 171 NPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGHWNDEGGL--KAM---EDLLVANK 225 Query: 220 DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 D+N ++GE+ LGA +A+ + + G + V +D E Sbjct: 226 DINMVLGENDSMVLGARRAIESAGRTGILLVAAADAQKE 264 >UniRef50_C5EMU2 Twin-arginine translocation pathway signal n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EMU2_9FIRM Length = 369 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLG 234 R K FEE LK P ++V +Q + +A+++ E ++ PDL + + LG Sbjct: 197 TNRHKAFEEALKD-YPNIEVVDSQTASWSQSEAMTLTENWLVKYPDLKGVYSANDTMALG 255 Query: 235 AVKAVRNQNQAGKIAVFGSD 254 AV+A++N+ GKI V G D Sbjct: 256 AVEALKNKGLNGKIMVSGCD 275 >UniRef50_D1BWE1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BWE1_XYLCX Length = 331 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ V+ G + A D V VQ + D +S +D VA NVD I++S + +G Sbjct: 62 FWDRVQSGARQAGADYDVTVQY---TSAADPGSQSLLIDQAVASNVDGIVVSMANPDGLE 118 Query: 103 RTVRRASEAGIPVICYNTCIN 123 +VR+A AGIPV+ N+ ++ Sbjct: 119 TSVRQAVAAGIPVVSINSGLD 139 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 28/230 (12%) Query: 39 DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSE 98 +T + GV G AA+D + L+ + V+ ++ VDAI + V Sbjct: 68 NTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVRLVEDMIQSGVDAICIHPVDS 127 Query: 99 NGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA---ADYFI 155 NG + +A +AGIPV+ T Q DK Y G K + A A+Y + Sbjct: 128 NGIVPALEKAWDAGIPVLVQGT---QANTDKIYGWY--------GTKYADEATLIAEY-L 175 Query: 156 ANKIDQPK--IAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKA--ISVG 211 A K+D + + + + + V + + P ++ Q G ++A +SV Sbjct: 176 AEKLDYKGNVVYITGPQQAQNAIDEINATHAVFE-KYPDLNLIEEQPGN-FNRATSMSVM 233 Query: 212 EKLI--ISTPDLNAIMGESGGATLGAVKAVRNQN-----QAGKIAVFGSD 254 E LI S D++ ++G + +GA+ A+ N + G I V G D Sbjct: 234 ENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDGGIGVSGID 283 >UniRef50_C5EKG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKG2_9FIRM Length = 343 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 65/115 (56%), Gaps = 4/115 (3%) Query: 19 GSALFARAAEKEMTIGAIYLDTQGYYAGVR-QGVQDAAKDSSVQVQLIETNAQGDISKES 77 GSA + E MTIG D + V + +Q+ AK+ + V LI T+A G+I+K++ Sbjct: 49 GSAEAGKGLEG-MTIGFSQCDNSSNWKIVETESIQEKAKE--LGVNLIYTDASGNIAKQA 105 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVS 132 + ++ +V++ V+ II++ E+G ++ A +AGI VI + IN + + Y + Sbjct: 106 SDIEDMVSQGVEYIIVAPQEEDGLQSALKSAMDAGIGVILIDRSINGEAGNAYTT 160 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 29/237 (12%) Query: 5 MRTTR-----NLLLMAT--------LLGSALFARAA-EKEMTIGAIYLD-TQGYYAGVRQ 49 M+TTR N+ ++A L G A + AA ++ M IG + T ++ + Sbjct: 1 MKTTRKNMIANVSVIAAVCVFGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESK 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 + K SV +++ A D+ +S +D + V I++ A +G V+RA Sbjct: 61 TAESYGK--SVGAEVLSQVANEDVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAV 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 AGIPVI + NQ K + + D + G+ + AD + KIA++N Sbjct: 119 SAGIPVIGVD---NQS---KNATVNITTDNKQAGEISCRSLADKLGG----KGKIAILNG 168 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIM 225 R G + +L + P +IVA+Q G D A+ + ++ + PDL+ Sbjct: 169 TPVSAVDDRVTGCKGIL-GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGFF 224 >UniRef50_A8RJH2 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RJH2_9CLOT Length = 351 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 25/166 (15%) Query: 32 TIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 T+G I D T YY V + +++ A+ + L +N D++KE VDTL RNVD Sbjct: 76 TLGLIVPDITNPYYPKVAKSIEEYAEKKGYMILLCNSNE--DLNKEKRLVDTLKKRNVDG 133 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV------DKYVSAYLVGDPLEFGK 144 +I+ S + R AGIP + N KG+ D + AY V + G+ Sbjct: 134 VIILPCSRH--IEHFRGFDNAGIPYVFLNRSF--KGIANCIPSDNFYGAYTVTKYV-IGR 188 Query: 145 KLGNAAADYF-IANKIDQPKIAVINCEAFEVCVQ--RRKGFEEVLK 187 N A Y N+I Q E FE ++ R G E+ K Sbjct: 189 GHKNICAAYLGFENQIYQ--------ERFEGTMEALREHGLEQCAK 226 >UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT9_CLOCL Length = 330 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 61/283 (21%), Positives = 119/283 (42%), Gaps = 37/283 (13%) Query: 11 LLLMATLLGSALFARAAEKEMT--------IGAIYLD-TQGYYAGVRQGVQDAAKDSSVQ 61 ++ +A L+ +F +K ++ I I L+ + Y+ V+ G + AAK+ ++ Sbjct: 12 IIFIALLISIIVFPFYYQKRISTQNEKIKNISLILLNQSDDYWKNVKLGAETAAKEFDIK 71 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 + ++ GDI+ + ++ VA VDA++L S V A GI V+ ++ Sbjct: 72 LNIVAPEDGGDITIQQNLINEAVAMKVDALLLVPSSFQELVEPVEAAVNKGIIVMTVDSK 131 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKG 181 +N ++ + D L GK G +A +N A V ++ G Sbjct: 132 VNTAK----IACCIATDNLSAGKSAGEKLVS-----------LARMNSVAAIVGFDKKTG 176 Query: 182 FEEVLKSRVPGAQIVAN--QEGTVLDK---------AISVGEKLIISTPDLNAIMGESGG 230 E R G + V +E V+D+ A + ++LI + D++ I+ + Sbjct: 177 SNEF--DRYKGIKEVTKDYKEIQVIDRWCDIKDSNGAERIAKELISNNEDISVIIALNYK 234 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 A++G +A+ GKI V D + + +E+ + V+ Sbjct: 235 ASIGVARAIEKLGLKGKIKVVAFDGDYQEVKYMEDGTIQSVVI 277 >UniRef50_B1ZU45 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZU45_OPITP Length = 313 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 24/249 (9%) Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 G++ QG + + +V + + D+ + + L +N+DA++++ + + Sbjct: 37 GFWVYAEQGAVETGEQLGAEVIVKAPPSVLDVGFQPRLLAALATQNLDALVVAPTNPDAV 96 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP-------LEFGKKLGNAAADYF 154 VR + G+ ++ +T D +V A LE K G+ A Sbjct: 97 EAMVRELAGKGVKIVTLDTPFKDGVADVFVGADQAVIAAAAAQVFLELAKD-GDEVA-LL 154 Query: 155 IANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKL 214 N +D+P ++ +A VQ R G V A + A+ E D+ + L Sbjct: 155 RNNSLDRP--VLLREQALRQAVQSRSGL-------VLHADVFASSEKNQEDQQ---AQLL 202 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAV--FGSDMTTEIAQELENNQVLKAV 272 + P + A+ + TL ++A+R GK+ V FG+ + E AQ E+ +L Sbjct: 203 LTQHPKIKAVFASATRGTLSTIRAIRQSGLVGKVKVVGFGTYLPDEAAQAFEDG-ILHGW 261 Query: 273 VDISGKKMG 281 V K +G Sbjct: 262 VAQEPKDLG 270 >UniRef50_Q0SK74 ABC sugar transporter, periplasmic solute-binding protein n=2 Tax=Rhodococcus RepID=Q0SK74_RHOSR Length = 363 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 15/218 (6%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 NA+GD +++ + V++ +A ++L + S + A+EA +PV+ Y+ V Sbjct: 73 NAEGDPARQQSQVESAIAEGASVLVLISTDARFSGGALTAAAEADVPVVLYD----HDAV 128 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV-QRRKGFEEVL 186 ++ DPLE G++ G+ AAD A D KIA + E Q G +E L Sbjct: 129 GGPADVQVIFDPLEVGRRQGSRAADLIAAMPGDGVKIARVGGNLGEYGTRQFLLGQDEFL 188 Query: 187 KSRVPGAQIVANQEGTVLDKAISVG-----EKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + +I E + D + G E L D+ + + G V A+ Sbjct: 189 QPLADSGKIRVVCETAIDDWDPAEGQAFAEECLARENNDIALFVTMNDDLGGGIVAALAG 248 Query: 242 QNQAGKIAVFGSD-----MTTEIAQELENNQVLKAVVD 274 + AG+I V G IAQE +N + K + D Sbjct: 249 RGLAGRIPVTGGQDANLAALQLIAQETLDNTIFKNLSD 286 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 23/240 (9%) Query: 73 ISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT-----CINQKGV 127 + ++ ++ ++ ++VDAII+ NG VR+A +AG+ V+ T + GV Sbjct: 123 VEEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRTGV 182 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLK 187 D Y S Y + + KLG FI ++ P A ++R G L Sbjct: 183 DYYESGYTMAKAV--ADKLGGKGK--FII--LEGPAGA-------SNAIERLNGINTGL- 228 Query: 188 SRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG 246 S G +IVA+Q + +SV E LI D++A++ + + LGAV+A+ N + Sbjct: 229 SEYEGIEIVASQTANFKRTEGMSVTENLIQQYTDIDAVIACNDESALGAVQALTAANMS- 287 Query: 247 KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-KVIQVP 305 + V G D + + ++ + A + G A +K +N + + E K I P Sbjct: 288 DVLVCGFDGSVDATNAVKEGTMF-ATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFP 346 >UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=Bacteria RepID=XYLF_HAEIN Length = 332 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS--SRTVRRASEAGI 113 K S+ ++ +A GD S + + ++ ++ +N+D +++ + NG S + A + GI Sbjct: 50 KAESMGAKVFVQSANGDDSAQISQIENMINKNIDVLVI--IPHNGEVLSNVISEAKKEGI 107 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE 173 V+ Y+ IN +D YVS +K+G A +A K + + Sbjct: 108 KVLAYDRLINNADLDFYVSFD--------NEKVGELQAKSIVAVKPEGNYFLMGGSPVDN 159 Query: 174 VCVQRRKGFEEVLKSRVPGAQI--VANQ--EGTVLDKAISVGEK-LIISTPDLNAIMGES 228 RKG +VL + +I V +Q + + +KA+ + E L + +++A++ + Sbjct: 160 NAKLFRKGQMKVLDPLIASGKIKVVGDQWVDSWLAEKALQIMENALTANKNNVDAVVASN 219 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSD 254 GA++A+ Q +GK+A+ G D Sbjct: 220 DATAGGAIQALSAQGLSGKVAISGQD 245 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 6/114 (5%) Query: 9 RNLLLMATLLGSALF----ARAAEKEMTIGAIYLDTQG--YYAGVRQGVQDAAKDSSVQV 62 RN ++ L+GSA+ A K++ + + + G Y+ + Q + AK+ + V Sbjct: 20 RNAMIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDV 79 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 ++I ++ D++K+ +D +A VD I+L+A + ++RA AGI V+ Sbjct: 80 KVITVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVM 133 >UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Tax=Bacteria RepID=DGAL_HAEIN Length = 331 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 123/276 (44%), Gaps = 19/276 (6%) Query: 14 MATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDI 73 A LGSA + AA+ + + IY + + +R+ + AK ++L+ ++Q Sbjct: 12 FAIALGSASASFAADNRIGV-TIYKYDDNFMSLMRKEIDKEAKVVG-GIKLLMNDSQNAQ 69 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 S ++ VD L+++ V A+ ++ V + + +A IPV+ +N K + Y A Sbjct: 70 SIQNDQVDILLSKGVKALAINLVDPAAAPTIIGKAKSDNIPVVFFNKDPGAKAIGSYEQA 129 Query: 134 YLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEVCVQRRKGF--EE 184 Y VG DP E G G+ A + A NK + + ++ E + R + EE Sbjct: 130 YYVGTDPKESGLIQGDLIAKQWKANPALDLNKDGKIQFVLLKGEPGHPDAEVRTKYVIEE 189 Query: 185 VLKSRVPGAQIVANQEGTVLDKAIS---VGEKLIISTP-DLNAIMGESGGATLGAVKAVR 240 + + Q+ + + D A++ V L S D+ I+ + G LGA++A + Sbjct: 190 LNAKGIQTEQLFIDT--GMWDAAMAKDKVDAWLSSSKANDIEVIISNNDGMALGALEATK 247 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 + K+ +FG D E Q + ++ V++ S Sbjct: 248 AHGK--KLPIFGVDALPEALQLISKGELAGTVLNDS 281 >UniRef50_Q5IH17 PydC n=1 Tax=Rhizobium sp. TAL1145 RepID=Q5IH17_9RHIZ Length = 306 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 43 YYAGVRQGVQDAAKDSSVQV-QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 ++ G+ G+ D AK S+V V Q+ A G+++++ + ++TL + VD ++L A + G Sbjct: 64 FWKGIAYGIADEAKRSNVTVAQISIAGAYGNVTQQFSQIETLQSLGVDYVVLGAAAYKGY 123 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVD 128 ++R +AGI VI ++ K VD Sbjct: 124 DPQLKRLKDAGIGVIAAGIPVDSKNVD 150 >UniRef50_C0CMP2 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CMP2_9FIRM Length = 366 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 120/269 (44%), Gaps = 27/269 (10%) Query: 44 YAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR 103 + + ++A S ++Q N ++ + +++ + VDAI + A S + Sbjct: 80 FTNAAEAAKEAGYISDYEIQ----NGDNTVNSQIAQINSFILDGVDAICICAASPTALNS 135 Query: 104 TVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID-QP 162 T+++A +AGI V+ +++ ++ GV Y + P E ++G + + F+A+K++ + Sbjct: 136 TIQKALDAGITVVAFDSIVDLDGV------YTMDYPWE---QIGKDSVE-FVADKLEGKG 185 Query: 163 KIAVINCEAFEVCVQR-RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGE---KLIIST 218 I V+ + Q G E +K+ P +IV QE A E K++ S Sbjct: 186 NIVVVRGVSGAAPDQGIYAGITEAMKAY-PDLEIV--QEVIGEASATKTQEELTKVMASL 242 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGK-IAVFGSDMTTEIAQELENNQVLKAVVDISG 277 PD++A++ GG +GAV A Q+GK + + D T E + + S Sbjct: 243 PDVDAVITHCGGDAIGAVNAFE---QSGKDMPIIIGDNTAEFINWWMEQEDYDTLSQGST 299 Query: 278 KKMGNAVFAQTLKVIN-KQADGEKVIQVP 305 G A L ++N + E ++ VP Sbjct: 300 PGCGAAALWTALDILNGYEVPEEMMLSVP 328 >UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEL4_9BACT Length = 359 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 30/211 (14%) Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 +A D S + V+++++ VD I++ S VR+A +AGIPVI Y+ I + Sbjct: 75 SANSDDSTQIRDVNSMISAGVDVIVIIPHDGQAMSEGVRQAHQAGIPVIAYDRSIQDSDL 134 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP---KIAVI-------NCEAFEVCVQ 177 D Y++ V K+G A A Y I + + P +I I N + F Sbjct: 135 DLYITFDNV--------KVGEAQAQYLI-DHLPSPGKGRIVRIYGAPTDNNAKMF----- 180 Query: 178 RRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIIST-----PDLNAIMGESGGAT 232 ++G + +L+ + I E + + +K+ + D + I+ + G Sbjct: 181 -KQGQDNILQPYIDRGDIEVIHEDWAENWEPANAKKITNAAITNNGSDFHGILASNDGTA 239 Query: 233 LGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 GA++A++ + KI V G D Q + Sbjct: 240 GGAIQALKEEGLVSKIIVTGQDAEMAACQRI 270 >UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZX1_DESAD Length = 312 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/230 (18%), Positives = 103/230 (44%), Gaps = 15/230 (6%) Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ V G A +DS + + + S + ++ + + VDAI+L+ + + Sbjct: 25 FWRIVCMGAHAAVEDSDITLIWRGPRVENKPSAQRHLLEYYIDQKVDAIVLAPMDRKTLN 84 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID-- 160 + +AS+AGI ++ ++ + +D +++ K G A+ +A+K+ Sbjct: 85 PYIEKASKAGIKIVIIDSPVTTDSIDGFIATD--------NYKAGAMGAE-LMASKLKGT 135 Query: 161 QPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ--EGTVLDKAISVGEKLIIST 218 P + V + C R KGF + +++ PG I+ +G+ + +S E ++ +T Sbjct: 136 GPVLVVGHSPDNGSCALREKGFIDKMQALSPGRTIITIHMLDGSERETRLSTKE-ILTNT 194 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 P + + + + G + ++++N+ I D ++ + + N Q+ Sbjct: 195 PSIAGVFTTNEATSDGVLHVMQDRNET-HIPFIAFDYNQKLLEGVRNKQI 243 >UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NFD0_EUBSP Length = 367 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 6/258 (2%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 T ++ +++G +D A++ V + + T++ D + + ++ ++ ++ +AI +S ++E+ Sbjct: 88 TNSFWVTMQEGYEDTAEEYGVSIDVQATDSDTDTTGQLDILNNMLVKDYEAIAVSPLTED 147 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 + A++ + +I +N+ + + ++F + G A Y I Sbjct: 148 CLISGIVAANQNDVKIITTGNEVNEDSLKEAGGKIDAKITVDFYNQ-GVLGAQYIIDKTD 206 Query: 160 DQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLII-S 217 + K+AVI E RR G +E + G ++VA ++ + II S Sbjct: 207 GKGKVAVIAGNEGATQSDARRDGAKETFED--AGMEVVAVEQCDFDAQKAYDAAAAIIES 264 Query: 218 TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISG 277 PD+ I + LG V+A+ ++ ++AV G D T E +E A V +S Sbjct: 265 NPDIVGIACGNDDMALGVVRALEEKDVKDQVAVVGVDFTEEAKAAIEEG-TYDATVAMSP 323 Query: 278 KKMGNAVFAQTLKVINKQ 295 MG LK + Q Sbjct: 324 YLMGKEAVIIMLKALEGQ 341 >UniRef50_B8E1T5 Rhamnose ABC transporter, periplasmic rhamnose-binding protein n=2 Tax=Dictyoglomus RepID=B8E1T5_DICTD Length = 334 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/278 (21%), Positives = 130/278 (46%), Gaps = 17/278 (6%) Query: 27 AEKEMTIGAIYLDTQG--YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 A+K+ IG + T G ++ V +G Q+AAK+ + V + + A + + +++++ Sbjct: 22 AQKKYVIGLV-TKTAGNPFFEAVNKGAQEAAKELGITV-IHQAPAASSVQGQIDIINSMI 79 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 A+ V AI +SA + R+A GIPV+ +++ + +G +V+ D + G+ Sbjct: 80 AQKVSAICISANDPDALVPVCRKAQLRGIPVVTFDSAVKPQGRKLFVNQ---ADMEQIGR 136 Query: 145 KLGNAAADYFIANKID-QPKIAVINCEAFEVCVQRRKGF--EEVLKSRVPGAQIVANQEG 201 +A I+ + +IA+++ + + EE+ K ++VA G Sbjct: 137 -----IQVQLLAKMINYEGEIAILSAASTMANQNTWIAWMKEELKKPEYSKMKLVAIVYG 191 Query: 202 -TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 + +K+ + L S P+L I+ + A +A+ + +GK+ + G + +E+A Sbjct: 192 DDIREKSYNEAMGLFKSYPNLKGIIAPTTVGIAAAARAIEDAGLSGKVQLTGLGLPSEMA 251 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + ++ KA + +G A T +++N++ G Sbjct: 252 EYVKRG-TCKAFALWNPIDLGYATIYATYRLLNREIKG 288 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/233 (21%), Positives = 108/233 (46%), Gaps = 30/233 (12%) Query: 39 DTQGYYAGVRQGVQDAAKD-------------SSVQVQLIETNAQGDISKESTFVDTLVA 85 + + Y GV Q +D +D +V ++ N + K+ ++ + Sbjct: 23 NVKKYVIGVSQCSEDIWRDKLNNELVMSTYQHDNVTLKFASANDNDRLQKQQ--IEQFIK 80 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 V+ +I+S + S + +A +AGIPVI ++ + K KY +A++ D E G + Sbjct: 81 EGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDSK---KY-TAFIGADNYEAGYE 136 Query: 146 LGNAAADYFIANKID-QPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 +GN FI ++D + IA + +A ++R +GF + LK G +++A + G Sbjct: 137 IGN-----FIGQQLDGKGNIAEICGLQASSPAIERNRGFMDALKD-YSGIKVIARKHGDW 190 Query: 204 LDKA--ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 + ++ +++ L + + + ++ LGA+++++ G I + G D Sbjct: 191 VKESGVMAMDSVLSQAKEPIQYVFAQNDRMALGALQSIKKHKVKG-IRIVGID 242 >UniRef50_A9HG18 Ribose ABC transporter, substrate-binding protein n=3 Tax=Acetobacteraceae RepID=A9HG18_GLUDA Length = 368 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 20/238 (8%) Query: 43 YYAGVRQGVQDAAK--DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 Y++ ++QG + D+ + Q T++ ++ ++ V +L+ R +DA+ ++A S Sbjct: 83 YFSAMQQGFLKGGRAFDARIVYQGPTTSS---VAAQAQIVQSLINRKLDAVAVAANSPTA 139 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 A E G+ ++ ++ VD V + L + D D Sbjct: 140 LEAQAVHARERGVIFASTDSQVDGDAVDLRVMQ-------ATDEALAHTLVDQLATQIPD 192 Query: 161 QPKIAVIN----CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLI 215 +IA ++ + + K + L ++ P Q+V+ Q G + KA + +++ Sbjct: 193 GGQIAFVSGGPTATNLNMWISLMKSY---LAAKFPKFQLVSVQYAGEDISKATEITSQIL 249 Query: 216 ISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 + P L I+G + AT GA +AV AGKIA+ G D I + N V AV+ Sbjct: 250 SAYPGLKGIIGVNTTATPGAAQAVLQAGLAGKIAITGIDDPNTIRPYVLNGTVKSAVL 307 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77269 ABC transporter periplasmic-binding protein yphF... 384 e-105 UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding... 293 5e-78 UniRef50_A0QZE7 ABC transporter periplasmic-binding protein YphF... 283 4e-75 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 230 6e-59 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 227 3e-58 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 225 2e-57 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 224 2e-57 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 224 5e-57 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 219 2e-55 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 218 2e-55 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 216 6e-55 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 214 3e-54 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 213 7e-54 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 211 2e-53 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 211 3e-53 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 211 3e-53 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 210 5e-53 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 209 1e-52 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 208 3e-52 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 208 3e-52 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 207 4e-52 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 207 6e-52 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 206 8e-52 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 205 2e-51 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 205 2e-51 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 204 3e-51 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 204 3e-51 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 204 3e-51 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 203 7e-51 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 203 8e-51 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 203 9e-51 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 203 9e-51 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 202 1e-50 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 202 1e-50 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 202 1e-50 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 202 2e-50 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 202 2e-50 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 201 3e-50 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 201 3e-50 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 200 4e-50 UniRef50_C0C5Z0 Putative uncharacterized protein n=1 Tax=Clostri... 200 4e-50 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 199 9e-50 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 199 1e-49 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 199 2e-49 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 197 3e-49 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 197 5e-49 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 197 6e-49 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 196 7e-49 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 196 8e-49 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 195 1e-48 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 195 2e-48 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 195 2e-48 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 194 3e-48 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 194 3e-48 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 194 5e-48 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 193 8e-48 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 193 9e-48 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 193 9e-48 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 193 1e-47 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 192 1e-47 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 192 1e-47 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 192 1e-47 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 192 2e-47 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 192 2e-47 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 191 3e-47 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 191 4e-47 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 190 5e-47 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 190 5e-47 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 190 6e-47 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 190 7e-47 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 190 7e-47 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 190 8e-47 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 189 9e-47 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 189 9e-47 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 189 1e-46 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 189 1e-46 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 188 2e-46 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 188 2e-46 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 188 2e-46 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 188 3e-46 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 187 4e-46 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 187 4e-46 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 187 4e-46 UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostri... 187 6e-46 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 187 6e-46 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 187 6e-46 UniRef50_A3DI69 ABC-type sugar transport system periplasmic comp... 187 6e-46 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 186 8e-46 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 186 1e-45 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 185 2e-45 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 185 2e-45 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 185 2e-45 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 184 4e-45 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 184 4e-45 UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional... 184 4e-45 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 184 4e-45 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 183 6e-45 UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostri... 183 7e-45 UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional... 183 7e-45 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 183 7e-45 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 183 8e-45 UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional... 182 1e-44 UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra... 182 1e-44 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 182 1e-44 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 182 2e-44 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 182 2e-44 UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter... 181 2e-44 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 181 3e-44 UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostri... 180 4e-44 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 180 6e-44 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 179 1e-43 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 179 2e-43 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 179 2e-43 UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerot... 178 2e-43 UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1... 178 3e-43 UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostri... 177 3e-43 UniRef50_C9A2C8 Periplasmic ribose-binding protein n=1 Tax=Enter... 177 4e-43 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 177 6e-43 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 177 7e-43 UniRef50_C2L0C0 Ribose ABC superfamily ATP binding cassette tran... 177 7e-43 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 177 7e-43 UniRef50_B8E1T5 Rhamnose ABC transporter, periplasmic rhamnose-b... 176 9e-43 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 176 9e-43 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 175 1e-42 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 175 1e-42 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 175 2e-42 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 174 4e-42 UniRef50_C1XTQ0 Monosaccharide ABC transporter substrate-binding... 174 4e-42 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 174 4e-42 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 174 5e-42 UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostri... 174 5e-42 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 174 6e-42 UniRef50_B9K5F9 ABC transporter nucleotide binding/ATPase protei... 174 6e-42 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 174 6e-42 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 173 7e-42 UniRef50_A9KMR5 Putative solute-binding component of ABC transpo... 173 7e-42 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 172 1e-41 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 172 2e-41 UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional... 172 2e-41 UniRef50_A9D050 RbsB protein n=2 Tax=Alphaproteobacteria RepID=A... 172 2e-41 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 172 2e-41 UniRef50_UPI0001973330 periplasmic binding protein/LacI transcri... 172 2e-41 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 172 2e-41 UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=... 171 3e-41 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 171 3e-41 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 170 5e-41 UniRef50_C0C5Y6 Putative uncharacterized protein n=1 Tax=Clostri... 170 5e-41 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 170 5e-41 UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostri... 170 5e-41 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 170 6e-41 UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacteriu... 170 6e-41 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 170 6e-41 UniRef50_C0BXQ7 Putative uncharacterized protein n=1 Tax=Clostri... 170 7e-41 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 170 8e-41 UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding... 169 9e-41 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 169 2e-40 UniRef50_A6M392 ABC-type sugar transport system periplasmic comp... 169 2e-40 UniRef50_C0CGP4 Putative uncharacterized protein n=1 Tax=Blautia... 168 3e-40 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 167 5e-40 UniRef50_Q1WVL1 D-ribose-binding protein n=2 Tax=Lactobacillus s... 167 7e-40 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 166 8e-40 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 166 8e-40 UniRef50_Q0SII4 ABC ribose transporter, substrate-binding compon... 166 9e-40 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 165 1e-39 UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional... 165 1e-39 UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostri... 165 2e-39 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 165 2e-39 UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein p... 165 2e-39 UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional... 164 3e-39 UniRef50_A8S1T0 Putative uncharacterized protein n=1 Tax=Clostri... 164 4e-39 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 164 4e-39 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 163 5e-39 UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobact... 163 7e-39 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 163 8e-39 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 163 8e-39 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 163 9e-39 UniRef50_B5K960 ABC transporter, periplasmic sugar binding prote... 162 1e-38 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 162 2e-38 Sequences not found previously or not previously below threshold: UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 196 8e-49 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 195 2e-48 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 190 6e-47 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 187 6e-46 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 186 1e-45 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 185 1e-45 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 185 1e-45 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 184 4e-45 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 184 4e-45 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 183 9e-45 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 181 2e-44 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 180 6e-44 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 180 7e-44 UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette tran... 179 1e-43 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 178 2e-43 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 178 2e-43 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 178 3e-43 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 178 3e-43 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 177 3e-43 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 177 4e-43 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 177 5e-43 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 177 5e-43 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 177 5e-43 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 177 5e-43 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 177 7e-43 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 176 8e-43 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 175 1e-42 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 175 1e-42 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 175 2e-42 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 174 3e-42 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 174 4e-42 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 174 5e-42 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 173 7e-42 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 173 7e-42 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 173 1e-41 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 172 2e-41 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 172 2e-41 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 170 5e-41 UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional... 170 7e-41 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 169 1e-40 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 169 2e-40 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 169 2e-40 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 169 2e-40 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 169 2e-40 UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional... 168 2e-40 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 168 3e-40 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 168 3e-40 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 168 3e-40 UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional... 167 3e-40 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 167 6e-40 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 167 6e-40 UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional... 166 1e-39 UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactob... 166 1e-39 UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostri... 165 2e-39 UniRef50_C2DYY0 Periplasmic sugar-binding protein n=8 Tax=Lactob... 165 2e-39 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 165 2e-39 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 165 2e-39 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 164 4e-39 UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium ... 164 4e-39 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 164 5e-39 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 163 5e-39 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 163 5e-39 UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotro... 163 7e-39 UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia... 163 8e-39 UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional... 163 9e-39 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 163 9e-39 UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional... 162 1e-38 UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional... 162 2e-38 >UniRef50_P77269 ABC transporter periplasmic-binding protein yphF n=58 Tax=Bacteria RepID=YPHF_ECOLI Length = 327 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 327/327 (100%), Positives = 327/327 (100%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV Sbjct: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT Sbjct: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK Sbjct: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR Sbjct: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK Sbjct: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 Query: 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327 VIQVPIDLYTKTEDGKQWLATHVDGLP Sbjct: 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327 >UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=3 Tax=Bacteria RepID=C1YRI6_NOCDA Length = 332 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 158/295 (53%), Positives = 221/295 (74%) Query: 33 IGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92 IG +Y+D QG+YAGVR+G+Q+ A DS ++QL+E NA+GD S+ESTFVD + + +VDA++ Sbjct: 38 IGVVYMDAQGFYAGVREGMQNYADDSGRELQLLELNARGDASEESTFVDVVSSADVDALV 97 Query: 93 LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152 LS VS S VR A E+GIPVICYNTCI + +YV++Y++GDP EFG+ LG+AAAD Sbjct: 98 LSPVSATASVPAVRLAHESGIPVICYNTCIEDEAAKEYVTSYILGDPHEFGRLLGDAAAD 157 Query: 153 YFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGE 212 +F ++ P+I V+NCE EVCVQRR+GFEE L +R+P A+IVANQEG +D+A++VGE Sbjct: 158 HFEDEGVEDPQIGVLNCEFVEVCVQRREGFEEALFARLPDARIVANQEGATIDEAVNVGE 217 Query: 213 KLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 +L+ + PDL+A GE+GGAT+GAV+AV N+ AG++ VFGSDM+T+ A+ L ++++LKA Sbjct: 218 RLLTAHPDLDAFYGEAGGATMGAVRAVTNRGLAGEVVVFGSDMSTDAARALSDHRILKAN 277 Query: 273 VDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP 327 VDISG +G ++I +A E V + PIDLYT EDG++WL H DG+P Sbjct: 278 VDISGIAVGLLAGETVERIIAGEAPEEFVTEAPIDLYTTPEDGEEWLEEHPDGVP 332 >UniRef50_A0QZE7 ABC transporter periplasmic-binding protein YphF n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZE7_MYCS2 Length = 329 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 146/331 (44%), Positives = 211/331 (63%), Gaps = 6/331 (1%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEM----TIGAIYLDTQGYYAGVRQGVQDAAK 56 MP +R R + ATL+ A A + + I +YL+ +G+YAGV+ GV+ A Sbjct: 1 MPRSLR--RRAVRFATLMLVAALAVSGCSRIGENGRIAVVYLNAEGFYAGVKVGVKKAFA 58 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 D+ QLIETNA+ D S+ES F+DT+ + VDA+ILS S + S VR A ++GIPVI Sbjct: 59 DAGDAPQLIETNARSDPSQESAFIDTVSSVQVDALILSPTSADASVPAVRLAHDSGIPVI 118 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV 176 CYNTC+ + KYV ++++G P EFG+ G +YFI N I PK+AVINCE FEVC+ Sbjct: 119 CYNTCVTESDARKYVDSWILGSPQEFGRIGGEQMGNYFIENGITHPKVAVINCEQFEVCI 178 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 QRR+GFE+ L S VP A+IVANQ+G ++D+A+ E+++ + PDL+A GE+G T+GAV Sbjct: 179 QRRQGFEQALTSLVPAAEIVANQQGLLVDEAVEASERILTAHPDLDAFYGEAGSMTVGAV 238 Query: 237 KAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 +AV+ + G++ VFG DM+T+IAQ L+ VL+ V DISG +G L+++ Q Sbjct: 239 RAVQARRLTGRVVVFGGDMSTQIAQMLQEGSVLRGVADISGITVGEMAADAALRLLRGQR 298 Query: 297 DGEKVIQVPIDLYTKTEDGKQWLATHVDGLP 327 ++ P+D Y + G +WL H DG+P Sbjct: 299 SENLIVDAPVDAYEGPDAGTRWLREHPDGIP 329 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 73/333 (21%), Positives = 143/333 (42%), Gaps = 39/333 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE-------------------MTIGAIYLD-T 40 M R LLL ++ KE M IG Sbjct: 1 MQKTRRLLSVLLLAIFMITGCSIEGQNNKEESKESGVEEKASETKTDGDMKIGVSLSTLN 60 Query: 41 QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 ++ +R+GV++AA +V+ + T+AQ D S ++ V+ L+ + VD I+++ V Sbjct: 61 NPFFVSIREGVEEAAGKENVETVI--TDAQNDSSTQNNQVEDLITQGVDLIVINPVDSTA 118 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 + +V +A+EA IPVIC + +Q + +++ + +E GK G Y + + Sbjct: 119 IATSVEKANEANIPVICVDRGSDQGEL----VSFIASNNVEGGKLAGE----YILEKVGE 170 Query: 161 QPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIST 218 ++ + +R +GFEE + ++A+Q + ++V E L+ + Sbjct: 171 NAEVIQLEGIPGASSTRERGEGFEEATNGK---INLLASQTANFDRAEGMTVMENLLQAH 227 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK 278 PD+ A+ ++ LGA +A++ + + + G D + + +E L A V K Sbjct: 228 PDVKAVFCQNDEMALGASEAIKASGK--DVTIVGFDGNEDAIKAVEEGN-LSATVAQKPK 284 Query: 279 KMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 +MG +K + + + E+ + P++L K Sbjct: 285 EMGKLAIETAIKYLKGE-EVEETVDSPLELIKK 316 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 13/294 (4%) Query: 25 RAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A ++TIGA L +Y ++Q ++ AA D+ V+ LI + A D++K+ + V+ Sbjct: 23 FALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVE--LIVSIANQDLNKQISDVEDF 80 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + R VDAI+LS V G + +A AGIPVI + VD A++ D G Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVD----AHVATDNYYGG 136 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 + G A + ++A+I+ + R GF+E + S+ PG +IVA Q G Sbjct: 137 RIAGETMAKVL----NGKGQVAIIDYPVVQSVRDRVAGFKEAV-SKYPGIEIVAIQPGIT 191 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 +A++ + ++ + P+++ I G A L +V AV++ + V G D E + Sbjct: 192 RPEALNTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAV 251 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + + AVV +MG L+VI + EK I V L+TK + K+ Sbjct: 252 KKEESFVAVVCQYPGEMGRLGLETALRVIKGE-KVEKEIPVLPGLFTKEGEQKK 304 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 13/270 (4%) Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 +Y + +G+Q+ A V+ LI + GD++ ++ V+ + + VD I+L + N + Sbjct: 72 EFYVDLEKGMQEVADAQGVK--LITQDPNGDLAAQTKQVEDFITQGVDGIVLCPIDSNAA 129 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 ++AGIP++ + + V++++ D G AA + Sbjct: 130 VTEAETINQAGIPLVTTDIAVAGGD----VASHIASDNT----LGGQLAAQFIGEQLGGT 181 Query: 162 PKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPD 220 K+A+IN ++R GF + + + P +IVA Q G + +K +SV E ++ S PD Sbjct: 182 GKVALINNPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQSNPD 241 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + + + LGA++AV+ Q I + G D T E + ++ LKA V + ++ Sbjct: 242 VQGVFAVNDMMGLGALQAVQAA-QRDDIVIVGFDATEEAVKYIKEGSALKASVAQNPVEL 300 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 G LKVI + EK I VP++L T Sbjct: 301 GKTTMETMLKVIAGE-QVEKNIPVPVELVT 329 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 11/286 (3%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 I ++ + + + A+ + + ++Q D +KES D ++A DAII + Sbjct: 39 VISTLNNPWFVVLAETAKQRAEQLGYEATIF--DSQNDTAKESAHFDAIIAAGYDAIIFN 96 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 +GS V+RA EAGIPV C + IN +G+ A + D G +G + Sbjct: 97 PTDADGSIANVKRAKEAGIPVFCVDRGINARGL---AVAQIYSDNYYGGVLMGEYFVKFL 153 Query: 155 IANKIDQPKI---AVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISV 210 D +I ++ + + R GF V+ + P ++VA Q D A V Sbjct: 154 KEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVV-DQYPEFKMVAQQSAEFDRDTAYKV 212 Query: 211 GEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLK 270 E+++ + P++ AI + LGA+KA + I +FG D ++ ++ + + Sbjct: 213 TEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTD-IYIFGFDGAEDVINAIKEGKQIV 271 Query: 271 AVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 A + K M + + + +++ V ++L T+ K Sbjct: 272 ATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRENIDK 317 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 66/292 (22%), Positives = 129/292 (44%), Gaps = 17/292 (5%) Query: 24 ARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 A+ K + +G ++ + GVQ+ AK VQV ++ N D + + V+ Sbjct: 38 GTASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTIL--NGNNDPATQLNQVED 95 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L+ ++V+AIIL+ S V +A+ A IPVI + + V+ ++ + +E Sbjct: 96 LIQQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSV----TKGNVACFIASNSVEA 151 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 GK AAD I + ++ + R KGF+E + + PG ++VA Q Sbjct: 152 GKM----AADELIKALGGKGQVVELQGVIGTSAEADREKGFDEEI-GKAPGIRVVARQTA 206 Query: 202 T-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 +A++V + ++ + P++ + ++ LGA+KA++ + I + G D E Sbjct: 207 NFDRSQALNVMQNILQAHPNIQGVFAQNDEMALGALKAIQEAGKHN-IKIVGIDGEKEAV 265 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 ++ +L A + + G +K++ + K + P+ L K Sbjct: 266 NDVHKG-LLYADIAQQPVQEGILGVEYAVKLVEGE-KVPKQVNSPLHLVEKN 315 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 139/296 (46%), Gaps = 14/296 (4%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS-VQVQLIETNAQGDISKESTFVDT 82 ++EK+ I I +D ++ V+ G + AK+ VQ+ + D +++ ++ Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + + DAI+++ + + V +A +AGIPVI ++ + DKYVS ++ D + Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVK---TDKYVS-FVATDNI-- 156 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFEEVLKSRVPGAQIVANQEG 201 K AAD + KIA+I+ + + R GF++ LK + P QI+ Q Sbjct: 157 --KAAEMAADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYS 214 Query: 202 -TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 ++A++ ++ + PDL G + G+T+G A++ ++ AGK+ V G D++ Sbjct: 215 MGDKNRALNQALDILTAHPDLAGFYGTNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATI 274 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 ++ N + ++V + MG + + + + K + + + TK + Sbjct: 275 NAIKENYIQASMV-QNPYMMGYKGVEIAVDKLQGK-EVPKRVDTGVTVMTKDNVDE 328 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 138/314 (43%), Gaps = 24/314 (7%) Query: 5 MRTTRNLLLMATLLGSALFARAA----EKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS 59 + T LL A L +A+ + +KE TIG ++ +++G++ AK Sbjct: 8 ILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIEKEAKKRG 67 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 ++V ++ +AQ D SK+++ V+ L+ + VDA++++ + S V A+ G+PV+ + Sbjct: 68 MKVIIV--DAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVPVVTID 125 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQR 178 Q V+ V++ V K G AA + K+A + +R Sbjct: 126 RSAEQGKVETLVASDNV--------KGGEMAAAFIADKLGKGAKVAELEGVPGASATRER 177 Query: 179 RKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 GF + + Q+V Q K ++V E L+ PD+ A+ + LGA++ Sbjct: 178 GSGFHNIADQK---LQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVFAHNDEMALGALE 234 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 A+ + + I V G D + +++ + L A V + +G +++ + Sbjct: 235 AINSSGK--DILVIGFDGNKDALASIKD-RKLSATVAQQPELIGKLATEAADDILHGK-K 290 Query: 298 GEKVIQVPIDLYTK 311 +K I P+ L T+ Sbjct: 291 VQKTISAPLKLETQ 304 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 135/299 (45%), Gaps = 12/299 (4%) Query: 20 SALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 +A + ++ IGA D + Q + + V++I +A D SK+ + Sbjct: 46 TAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQ 105 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V+ + + VDAI+L V + V +A++A IP++ N + GVDK +AY+ + Sbjct: 106 VENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFD--GVDK-ATAYVGSES 162 Query: 140 LEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVAN 198 ++ G A + KIA++N + E ++R +G ++V+K + P ++V Sbjct: 163 IKAGIMQMEEVAKLL----NGKGKIAIMNGQMGHEAQIKRTEGNKQVIK-KYPDMKVVLE 217 Query: 199 -QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT 257 K +S+ E + S ++A++ + +GA+ A+ ++ + + V G D T Sbjct: 218 GTAEWDRAKGMSLMENWLQSGKKIDAVVCNNDEMAIGAIMALEDEGKLDDVIVAGVDATP 277 Query: 258 EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + + ++ + LK V + K G +K + EK +P +L TK + Sbjct: 278 DALEYVKEGK-LKVTVFQNAKGQGQLGLEVAIKAAKGE-KVEKFNWIPYELVTKDNVEE 334 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 135/310 (43%), Gaps = 23/310 (7%) Query: 8 TRNLLLMATLLGSALFARAAEKE---MTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQ 63 L L A L +A+ +++ + IG ++ ++ GV AK ++V Sbjct: 11 LALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVKEAKKQGIEVI 70 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 ++ +AQ D +K++ V+ L+ + VDA++++ + S V+ A+ GIPV+ + Sbjct: 71 VV--DAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPVVTLDRSAE 128 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGF 182 V+ V++ V K G AAD+ + K+A + +R GF Sbjct: 129 NGKVETLVASDNV--------KGGQMAADFIVEQLGKGAKVAELEGVPGASATRERGSGF 180 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + + ++A Q K ++V E L+ PD+ A+ + LGA++A+R+ Sbjct: 181 HKTADDK---LNVIAKQTADFDRTKGLNVMENLLQGNPDIQAVFAHNDEMALGAIEAIRS 237 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 + +I V G D + + ++ + A + + +G ++N + EK Sbjct: 238 SGK--EILVVGFDGNEDAVKAVQAGD-MSATIAQQPELIGKLAVQAARDILNGK-KVEKT 293 Query: 302 IQVPIDLYTK 311 I P+ L TK Sbjct: 294 IPAPLKLETK 303 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 136/309 (44%), Gaps = 19/309 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ L+ A L + A+ M I L+ ++ ++ G + AK+ L Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDTMAIVVSTLN-NPFFVTMKDGAETRAKELGY--NL 57 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 I ++Q D SKE + V+ L R V AI+++ + S +R A+ + IPV+ + ++ Sbjct: 58 IVLDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASR 117 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 V +++ D + G+ GN + + ++ K+ + +R +GF Sbjct: 118 GD----VVSHIASDNVVGGEMAGN----FIVEKVGEKAKVIQLEGIAGTSAARERGEGFM 169 Query: 184 EVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 +K +++A+Q K ++V E L+ + PD+ A+ ++ LGA++A++ Sbjct: 170 NAVKGSH--MELLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQAS 227 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI 302 + ++ + G D T + + + L A + +G KV+ + E I Sbjct: 228 GK--EVMIVGFDGTDDGIAAVNRGK-LAATIAQQPDLIGALGIETADKVLKGE-QVEDYI 283 Query: 303 QVPIDLYTK 311 VP+ + TK Sbjct: 284 PVPLKVVTK 292 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 75/309 (24%), Positives = 137/309 (44%), Gaps = 16/309 (5%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLI 65 T L L A G A +K IG + D +++ + +G ++AA Sbjct: 16 TLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAAASIGATAN-- 73 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 +AQ D++ ++T +DT + + V+ I++SAV ENG + RA +AGI VI +T Sbjct: 74 TQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVDTPAKSA 133 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV 185 A ++ D ++ G+K + Y + + +++ + R G V Sbjct: 134 D------AVVMTDAVQAGEK----SCQYLFEQMGGKGNVLLVDGTPLQTIRDRITGCNNV 183 Query: 186 LKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 +K + PG ++V Q ++V ++ +TPD+ I G + + LGAV AV+ ++ Sbjct: 184 VK-KFPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQGIFGMNDPSALGAVLAVQQAHK 242 Query: 245 AGKIAVFGSDMTTEIAQELE-NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 AG + V G D + E EL+ + + +M +I+ + E I Sbjct: 243 AGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNIIDNKPPAETTIL 302 Query: 304 VPIDLYTKT 312 +P +L T+ Sbjct: 303 IPSELVTRD 311 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 138/312 (44%), Gaps = 14/312 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS-VQV 62 M+ +N T L ++ AA+ + T+G I ++ + G + A++ ++ Sbjct: 38 MKLLKNTAAAVTALALSVGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYEL 97 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 + + D + V+ + + VDAI+++ R +RRA EAGI VI ++ + Sbjct: 98 LAVGMQNETDFESQINAVENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVAL 157 Query: 123 NQKGVD--KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 + ++ A++ D + GNA + + ++ +I + QRR Sbjct: 158 DTGAMEQQGIELAFVGPDNRMGAEMAGNALGEAL----GEGGRVVIIEGNPGADNATQRR 213 Query: 180 KGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 GFE+ + + G +++ ++ ++A V ++ + PDL +M + +G ++A Sbjct: 214 LGFEDAIATH--GLELLESRTAHWETEEANQVFAAMLTAHPDLQGVMAANDSMAIGVIEA 271 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + I V G D + +E+ ++L A VD G+ M L+V+ D Sbjct: 272 LDAAGR-DDILVVGFDAVPAVLPMIEDGRML-ATVDQFGQAMAANAIDLALEVLETGVDL 329 Query: 299 EKVIQVPIDLYT 310 E ++ PI+L T Sbjct: 330 EGWVRTPIELVT 341 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 132/306 (43%), Gaps = 13/306 (4%) Query: 10 NLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 +L AT+L L A ++ +G Y A + + +Q+ A+ V L ++ Sbjct: 14 RAVLFATVL--CLAGSTALADLRLGVSVGQFDNYIAYLVRAMQERARQVPGGVTLQVEDS 71 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 D+ ++ V++ +A+ VDAII++ + RA+ AGIP++ N+ + Sbjct: 72 GSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREFPA 131 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKS 188 V ++ D ++LG +Y + +A++ A + +R G ++VL + Sbjct: 132 GVV-FVGTDE----RRLGQMQMEYLAEKMGGKGDLAILLGRLAHDDTRKRTAGVKDVL-A 185 Query: 189 RVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 R P ++V Q G DK + + + S + +A++ + +GA A+R + + Sbjct: 186 RYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFDAVVANNDEMGIGAAMALRQAGR-RE 244 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPID 307 ++V G D T + + Q L + MG L+++ K + + +P+ Sbjct: 245 VSVGGIDGTPDGLAAIARGQ-LAVTLLRDPVAMGEEAVDVALRLVRKDV-VQGDVWIPVH 302 Query: 308 LYTKTE 313 L T Sbjct: 303 LITPDN 308 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 15/291 (5%) Query: 28 EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 +K+ G + ++ + + ++ + + QLI + D+SK+ ++ ++ + Sbjct: 38 KKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGD--QLITMDPAMDVSKQIDQINDMITQ 95 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 V+A+ L+ V G + +A IP+I ++T + YV+AY+ D GK Sbjct: 96 GVEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDM---NYVTAYVGSDNKNAGKVC 152 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLD 205 G D + + KIA++NC R GF+ ++ + IVA Q+G L Sbjct: 153 G----DDLVKRYPNGGKIAILNCPTMNSINDRIAGFKSAIEGK--NFTIVAEQDGKGDLQ 206 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 ++ + + ++ S D+ AIMG + LGA+ A ++ Q+ KI ++G D + + +E+ + Sbjct: 207 TSMKLADDILQSHSDIVAIMGGNDPTALGALAACKSAKQS-KILIYGVDGSPDAKKEIAS 265 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 S K++G KV+NKQ + EK V L K K Sbjct: 266 GGQFVGTGAQSPKQIGVKSAELGYKVLNKQ-NVEKKTPVQTFLINKDNVSK 315 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 73/327 (22%), Positives = 136/327 (41%), Gaps = 19/327 (5%) Query: 6 RTTRNLLLMATLLGSALF-------ARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKD 57 R + L+ +ATLL A A EKE+ I T ++ V+ G + A ++ Sbjct: 110 RRSFCLVSVATLLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEE 169 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 ++ + + D ++ V + VD I+L+ + + R V+ AS AG+PV+ Sbjct: 170 IGAKITFRGPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVI 229 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ 177 +++ +N D +Y+ D E GK G A A+ D I + + E Q Sbjct: 230 FDSGLNTDPGD--FVSYVATDNFEGGKLAGEAMANALGEKGGD--VILLRYEQGSESTHQ 285 Query: 178 RRKGFEEVLKSRVPGAQIVANQE--GTVLDKAISVGEKLIISTPD-LNAIMGESGGATLG 234 R +GF + +++++ + GT + AI + L+ D + I G Sbjct: 286 REEGFLYSIAE-YSNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTVCEPTAEG 344 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 A++A+R + AGK+ + D + + + L +V A+V MG + Sbjct: 345 ALRALRERKLAGKVKLVTFDSSDSLRESLSAGEV-NAIVLQDPVAMGYQAVKTMAAHLRG 403 Query: 295 QADGEKVIQVPIDLYT-KTEDGKQWLA 320 + E+ I + + T K +D + Sbjct: 404 ETP-EQFIDTGVFVATAKNQDDENIAR 429 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 20/296 (6%) Query: 24 ARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 + A K++ +G + ++ VR G+QD AK + VQ+ ++AQ D +K+++ ++ Sbjct: 41 TKKAPKDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQV--SDAQNDTAKQNSNIED 98 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L+ + VD +I++ V + + V+ A++AGIPVI + + V V++ Sbjct: 99 LIQKKVDVLIINPVDSSAITPAVKDANDAGIPVITVDRSSDGGKVLTLVASNST------ 152 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 K G AA Y I KIA + +R KGF+ K + IV+ Q Sbjct: 153 --KGGQMAAKYMIEKLGKDAKIAELQGIPGASATRERGKGFDGAAKGK---LDIVSKQTA 207 Query: 202 T-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 K ++V E ++ D+ I ++ LGAV+AV+ + KI + G D + Sbjct: 208 GFDRAKGLTVTENILQGNGDIVGIFSQNDEMALGAVQAVKAAGK--KITIVGFDGEADGI 265 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + ++ + A V ++MG N + +K ++ P+ L T + K Sbjct: 266 KAVKAGD-MAATVAQKPEEMGRLALQAAYDHFNGKT-VKKNVESPLSLVTTEDANK 319 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 76/336 (22%), Positives = 144/336 (42%), Gaps = 30/336 (8%) Query: 3 TKMRTTRNLLLMATLLGSALFARAAEKE------------MTIGAIYLD-TQGYYAGVRQ 49 K + +LL L+GSA+ KE +T+G + ++ G+ + Sbjct: 2 KKTKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGMEK 61 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 GV+D + + LIETNA GDI+K+ + ++ L+ + VD +I++A+ + V++A Sbjct: 62 GVKDKTSEIGCK--LIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAK 119 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 EA IP+I + N + + + +L D ++ G++ ++ + I Sbjct: 120 EANIPIIFLDRGANSEDM----TTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEIEG 175 Query: 170 -EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGE 227 + R KGF V+ + +IVA Q G +K+++V + ++ + P ++A+ G Sbjct: 176 LQGTSAARDRGKGFHNVM-DKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPKIDAVFGH 234 Query: 228 SGGATLGAVKAV------RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG 281 + T+GA KA+ + I V G D + + ++ + + MG Sbjct: 235 NDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNI-DVSISQDPIGMG 293 Query: 282 NAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 LK I + EK I TK + Sbjct: 294 VQAVEVGLKAIKGE-QVEKHIYTKFFPITKDNATDE 328 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 13/294 (4%) Query: 24 ARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 EK TIG L +Y ++ ++ A +V++ + + A D++K+ + ++ Sbjct: 32 TETGEKTYTIGVSLLTQQHPFYLSLKDAIEKEAAAQNVKLNV--SIANQDLNKQISDIED 89 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + + VDAII+S V G V++A A IPVI + + GVD V+A++ D Sbjct: 90 FITKKVDAIIISPVDSKGVLAAVKKAEAANIPVITVD--VPAIGVD--VAAHVATDNYTG 145 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 GK G A + ++AVI + VQR +GF+EV+ ++ P +IVA Q G Sbjct: 146 GKIAGEEMARLL----NGKGEVAVIEYPTVDSVVQRIEGFKEVI-AKYPDIKIVAIQAGI 200 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 +A++ + +I + +L I G A L AV AV++ + +I V G D E Sbjct: 201 TRPEALTAAQNMIQANKNLGGIFGFGDDAALAAVAAVKSAGKEDQIKVIGFDGMQEARDA 260 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + + AV+ + MG TLK++ + EK I V ++TK + K Sbjct: 261 VTKEKSFAAVITQYPEDMGKIAVDTTLKILKGE-QVEKNIPVTPGIFTKEGEKK 313 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 22/319 (6%) Query: 3 TKMRTTRNLLLMATLLGSALFARAAE----KEMTIGAIYLDTQG-YYAGVRQGVQDAAKD 57 T + TT ++ L+ + + ++ K++ +GA L Q + V + A+ Sbjct: 7 TPITTTLSIFLLLASCNQSGTSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQK 66 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 + ++ LI +A+ K+ V++ +A+ VDAII++ SS V +A A IP+I Sbjct: 67 AGIE--LITVDAERSALKQVEQVESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIIN 124 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCV 176 N+ + K SA++ D +E + A + + + +++ + Sbjct: 125 VNSETSSKP-----SAFVGSDDVESAR----IAMKFIADKLGGKGNVVMMHGYMGQAAQI 175 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIIST-PDLNAIMGESGGATLG 234 +R +G E+LK + P +++A+Q G KA+S+ E I S +NA+ + LG Sbjct: 176 KREQGAREILK-QYPNLKLLAHQTGEWDRAKAMSLMENWIQSYGSQINAVFAHNDEMGLG 234 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 AVKA+ + K+ V D + Q ++ L A V + ++ G A +K Sbjct: 235 AVKALTDAGLKDKVIVVSIDAIPDALQAVKKGS-LDATVFQNAEQQGAKAIATAIKAAKG 293 Query: 295 QADGEKVIQVPIDLYTKTE 313 Q +K VP L TK Sbjct: 294 Q-PFDKETLVPFQLVTKDN 311 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 137/317 (43%), Gaps = 22/317 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEK-----EMTIG-AIYLDTQGYYAGVRQGVQDA 54 M + M + A A+A + + IG A+ + ++ +++G ++ Sbjct: 5 MKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKGAEEE 64 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 A+ + LI +AQ D +K+ ++ L+ + V I+++ + V+ A+ AGIP Sbjct: 65 AQKQG--LTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAAGIP 122 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFE 173 V+ + +N V++++ D + GK AA+Y + +Q + + Sbjct: 123 VVTLDRSVNGGE----VASHVASDNVAGGKM----AAEYLLEKIGNQGDVVELEGIPGAS 174 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGAT 232 +R +GF +V+ + ++V Q K +SV E ++ + ++ + + Sbjct: 175 AARERGQGFHDVI-DQAKDVKVVGRQPADFDRAKGLSVMENILQANKNVKGVFAHNDEMA 233 Query: 233 LGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI 292 LGAV+A+ + V G D T + ++ + + A V K +G K+I Sbjct: 234 LGAVQALEAAGMKD-VTVVGFDATDDAVNAVKAGK-MSATVAQKPKLIGKTAVDAAKKII 291 Query: 293 NKQADGEKVIQVPIDLY 309 + Q +K + VP+DL Sbjct: 292 DGQ-PVDKSLPVPLDLV 307 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 138/307 (44%), Gaps = 15/307 (4%) Query: 8 TRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIE 66 ++LL+ +G + +E IG + ++ +++G + +K+ ++ ++ Sbjct: 12 CASILLVLGFVGCSNK-HTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVL- 69 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 ++Q D +KE + ++ L+ + +I++ + +V+ A++A IPVI + N Sbjct: 70 -DSQNDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGE 128 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVL 186 V +++ D ++ G+ + D K + + + +R KGF ++ Sbjct: 129 ----VVSHIASDNIKGGELASSFIIDELKNKKDIK-VVELQGIPGASATRERGKGFHNII 183 Query: 187 KSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 + +++++Q + +SV E +I + D +A+ + LGA KA++ N+ Sbjct: 184 DKKS-NLKLISSQAANFDRAQGLSVMENIIQAQSDFDAVFAHNDEMALGAAKALKTANK- 241 Query: 246 GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVP 305 KI V G D + +E +++ A V MG+ +K+ N Q + K I V Sbjct: 242 -KIIVVGFDGDEDAKTAIEKSEI-SATVAQQPALMGSTSIETAVKISNGQ-NISKNIPVK 298 Query: 306 IDLYTKT 312 + L TK Sbjct: 299 LRLITKN 305 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 142/289 (49%), Gaps = 12/289 (4%) Query: 28 EKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 +K++TIG + Q ++ + +G+++ AK+ V+V I + D++K+++ ++ + + Sbjct: 39 KKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKV--IVNDPDQDVAKQTSAIEDFIQQ 96 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 NVD +I+ + V A E +PV+ + +N + +++Y+ + GKKL Sbjct: 97 NVDGMIVLGTDNSAIVPAVEGAFEK-MPVVTVDAVLNTEN----ITSYVGTVSYDAGKKL 151 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK 206 G Y + +IA++ ++ +QR GF++ LK +I+ +Q G ++ Sbjct: 152 GEYTKKYIDEKLGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSA-NVKILNSQPGYDREE 210 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 +++ E LI S PD++ I + + LGA A+ + + + G D+T E + + + Sbjct: 211 SLNTVENLIQSNPDVDIIYATAENSVLGAKAALESAKNKD-VKIVGFDLTEEASSGITDG 269 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 +L A++ K+MG +K I + EK I VP LY K Sbjct: 270 TIL-AMIQQQPKEMGRLAVEAVVKAIKGE-KVEKNIPVPALLYDKENIK 316 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 125/287 (43%), Gaps = 13/287 (4%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 + Y+ V+ G DAAK+ V+VQ++ NA+ D+ +++ ++ + + VDA++++ Sbjct: 44 VLKALNSDYWKTVQAGANDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVA 103 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 + N + T +A + IPV+ +T N +++ + GK G + Sbjct: 104 PLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKK----SFVGTGNIAAGKLGGEYISKKL 159 Query: 155 IANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEK 213 K I + +R +G ++ L++ G ++V Q +KAISV E Sbjct: 160 ---KKGDEAIIIRGVPGDRTQDERTQGAQKALEAA--GIKVVEIQPANSEREKAISVMEN 214 Query: 214 LIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 L+ + P++ + + LGAVKA++ + I++ G D + + + ++ L V Sbjct: 215 LLQTHPNIKGVFCTNDEMALGAVKALQQAGKKNIISI-GVDGSPDALKSIKEGG-LTGTV 272 Query: 274 DISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 + +G +KV+ + E I L K +Q Sbjct: 273 AQNSYDIGKKGVETAVKVLRGE-KVETRIDTGTTLVDKQNVNEQEAK 318 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 133/314 (42%), Gaps = 21/314 (6%) Query: 8 TRNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGV---QDAAKDSSVQVQ 63 RNLL A L S + AA+K TI I T Y+ + G Q ++ ++V Sbjct: 5 LRNLLTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVD 64 Query: 64 LIETNA--QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 LI + D ++ V+ + R V ++L+ + V A A IPV+ +++ Sbjct: 65 LIWKGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSA 124 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRK 180 + DKYVS ++ D + G+ + + ++ +R Sbjct: 125 LK---TDKYVS-FVATDNYKGGQLAAERMGQLL----EGKGNVILLRYAVGSASTEEREA 176 Query: 181 GFEEVLKSRVPGAQIVANQE--GTVLDKAISVGEKLIISTP-DLNAIMGESGGATLGAVK 237 GF + LKS+ P +++++ + G + A + L+ ++N I T+ K Sbjct: 177 GFMDTLKSKFPNIKVISSDQHAGATRETAYQASQNLLNRFGHEVNGIFCPCEPPTVAMAK 236 Query: 238 AVRNQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A+R+ +A GK+ + G D ++ +L+N V + +V + +MG ++ + + Sbjct: 237 ALRDIGKAGGKVKMVGFDAGSQSVIDLKNGDV-QGLVVQNPLRMGYLGVITMVQHLQGE- 294 Query: 297 DGEKVIQVPIDLYT 310 EK I + + T Sbjct: 295 KVEKRIDTGVQIVT 308 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 125/289 (43%), Gaps = 16/289 (5%) Query: 27 AEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 + K+ IG T ++ V+ GVQ AA + +++ + T+AQ D + + V+ L+ Sbjct: 62 SGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYI--TDAQDDPTIQMKDVENLIT 119 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + DAII+ + ++ +EAGIPV + N V +++ D ++ G+ Sbjct: 120 KKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGE----VISHIGYDAIKSGRM 175 Query: 146 LGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-V 203 G Y + + KI I V R +GF EV+K P +IVA Q Sbjct: 176 AG----QYLVDTLGGKGKIVEIQGIMGTNVAQNRSQGFNEVMKDN-PDMEIVACQVADFD 230 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 K +SV E ++ + P+++ + + LGA++A+ + +I G D + + Sbjct: 231 RAKGMSVMENILQANPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCDAIDDTLDAM 290 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 + +V A + +G A+ + + E + + L T+ Sbjct: 291 KAGKV-DATIAEPPFFLGKAILNTAYDYLEGK-QVEPYVILDNQLVTQD 337 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 129/296 (43%), Gaps = 11/296 (3%) Query: 6 RTTRNLLLMATLLGSA-LFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 + +N+ + L+ + A AA+K + + Y+ +RQG ++ AK+ ++ + + Sbjct: 4 KLLKNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIV 63 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + + V+ ++A+ VDAII++ ++A +AGIP+I + ++ Sbjct: 64 QVAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDA 123 Query: 125 KGVD--KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKG 181 K + Y+ D G A+ + +A++ + QR+ G Sbjct: 124 KAAEAAGLKFNYVGVDNFNGGYLEAKNLAEAI----GKKGNVAILEGIPGVDNGEQRKGG 179 Query: 182 FEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 + P +IVA+Q ++A++V ++ + P++N I + +GAV AV Sbjct: 180 ALKAFAE-YPDIKIVASQSANWETEQALTVTTNILTANPNINGIFAANDNMAIGAVTAVE 238 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 N AGK+ V G D + ++ + ++ +D KK LK INKQ Sbjct: 239 NAGLAGKVLVSGYDGIPLAIEYVKQGK-MQNTIDQLPKKQVAIAIEHALKQINKQE 293 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 18/307 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE-KEMTIGAIY-LDTQGYYAGVRQGVQDAAKDS 58 M +++ +L ++ L+ A++ A + K+ TI I L T G+Y + +G ++AAK Sbjct: 1 MSKRVKWVFTVLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRL 60 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 V++ + + + ++ ++AR DAI+++ N ++RA EAGI +I Sbjct: 61 GVELIFQG-GPEFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITV 119 Query: 119 NTCINQ-------KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-E 170 +T I + KG + AY+ D +E G+ A A ++ K+ V N Sbjct: 120 DTFIGENGQYQTGKGNADFPLAYVASDNVEGGRIAARALAKAI----GEKGKVYVSNVKP 175 Query: 171 AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESG 229 QR +GF+E +K + PG ++A Q +KA S + PDL + G + Sbjct: 176 GISTTDQREQGFKEEMK-KYPGITVLATQYNDNDANKAASQLAAALARNPDLAGVFGANL 234 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 + +GA V+N + G + V D I +++ + AV +MG + Sbjct: 235 FSAIGAANGVKNAGKRGAVKVAAFDCPESIINDIKGGTIDMAVC-QHPAEMGRIAVEWAV 293 Query: 290 KVINKQA 296 K +N + Sbjct: 294 KALNGEK 300 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 15/309 (4%) Query: 15 ATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDI 73 A+ + + TIG L ++ + + K ++ + D+ Sbjct: 25 ASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGDNIVSEGKKRGYDAVVVSGD--KDV 82 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 +K+S + + + V AI+LS ++ A+ AGIPV + ++ GV ++ Sbjct: 83 AKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAAGIPVFTVDIPCHEPGVK--IAT 140 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSR---- 189 + D GK+ A + KIA+++ + E C R KGF E++ + Sbjct: 141 QIATDNYGGGKEAAKAMIEALGEA---GGKIAILHFKQAESCQLRVKGFREIIDAHNAEG 197 Query: 190 VPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKI 248 IVA E G D+ E + + PDL+ I + A LGA A+ + ++ Sbjct: 198 KSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHGIFAINDPAALGARAALEKAGKTDQV 257 Query: 249 AVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 + G D E Q ++ ++ + KMG + ++ + +++ +P L Sbjct: 258 VIVGFDGQPEGKQAIKEGKIYADPI-QFPDKMGAQIVDAIIQQSKGETLPPQML-IPTSL 315 Query: 309 YTKTEDGKQ 317 Y K + K Sbjct: 316 YKKADAEKD 324 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 139/306 (45%), Gaps = 17/306 (5%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGA-IYLDTQGYYAGVRQGVQDAAKDSSVQVQLIET 67 L + LL S+ +A A+ IG I + VR G+++AA+ +VQ+Q Sbjct: 4 CKLFIAVLLLVSSQWAAAS---YRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQF--E 58 Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 +AQGD+ ++ V +++ VDA+I+ V + ++ R A EA +P++ N +++ + Sbjct: 59 DAQGDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVL 118 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVL 186 K V+ + + +E G+ Y + IA+I + A R +G ++VL Sbjct: 119 PKGVTT-VASNDIEAGQLQ----MRYLAEKMGGKGTIALIMGDLAQNSTHDRSEGVKQVL 173 Query: 187 KSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 K PG IV Q +K + + +++ +AI+ + +GA A++ +A Sbjct: 174 KD-YPGITIVEQQTAEWQRNKGMDLTSNWLLAGRTFDAIVANNDEMAIGAAMALQQAGKA 232 Query: 246 -GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 G++A+ G D + ++ +L A V K +K+I + + + V Sbjct: 233 KGEVAIVGIDGLPDGLAAIKRG-MLAASVFQDPKAQATTALQSAIKMIKGE-PVDAEVWV 290 Query: 305 PIDLYT 310 P L T Sbjct: 291 PFQLIT 296 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 134/316 (42%), Gaps = 20/316 (6%) Query: 1 MPTKMRTTRNLLLMATLLG-SALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSS 59 M ++LL A LL S F+ +A+ + I ++ ++ ++ G + A + Sbjct: 1 MKRLAHHKVSVLLSAALLSVSTSFSASAQDAIAIVLSTMN-NPFFVTMKDGAEAKAAELG 59 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + LI ++Q D SKE V+ L R V AI+++ + +R A+ A IPV+ + Sbjct: 60 YK--LIALDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLD 117 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQR 178 + +++ D + G+ G A N K+ + +R Sbjct: 118 RTAAHGD----IVSHIASDNIAGGELAGEFIAQQLGKN----AKVIQLEGIAGTSAARER 169 Query: 179 RKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +GF + + +++++Q K ++V E ++ + D+ A+ ++ LGA++ Sbjct: 170 GEGFSNAVTAN--NFELLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALR 227 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 A+ + I V G D T E + Q L A V + +G +++ Q Sbjct: 228 AIEAAGK--DILVIGFDGTDEGIAAVRRQQ-LSATVAQQPELLGATAIMTADRILKGQV- 283 Query: 298 GEKVIQVPIDLYTKTE 313 EK I V + + T+T+ Sbjct: 284 VEKSIPVALKIITQTQ 299 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 123/307 (40%), Gaps = 11/307 (3%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQL 64 + ++ LM +L ++ + + IG + ++ ++ G + A+ + + Sbjct: 5 KKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVV 64 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + ++Q D +KE V+ L+ V A++++ + +TV A+++ IPVI + N Sbjct: 65 L--DSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANG 122 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEE 184 +++++ D ++ G+ D F K + + R +GF Sbjct: 123 GK----ITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFHN 178 Query: 185 VLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 ++ I K + V E +I + P++ + + LGAVKA++ Sbjct: 179 IMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKASGI 238 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 V G D + ++ N+ + A++ +G K+ ++ K I Sbjct: 239 NA--LVIGFDGNDDAKDSIDANE-MTAIIAQQPDLIGALGVELANKIYKGESIKNK-IAA 294 Query: 305 PIDLYTK 311 + +YTK Sbjct: 295 DLKVYTK 301 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 74/311 (23%), Positives = 142/311 (45%), Gaps = 15/311 (4%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSV 60 T M+T + A L + + + A K++ + + Q ++ V+ G + AAK+ Sbjct: 39 STTMKT--RHFIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGD 96 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + + I+++ V+ +A+ + ++L+A+ N + V A+ GI V+ +++ Sbjct: 97 KTSYVGPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDS 156 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRR 179 IN +V+ +K G AAD + ++ K+ +I + ++R Sbjct: 157 GINSDIPVSFVATN--------NRKAGAQAADALASQVNNKGKVGIIAHVAGTSSAIERS 208 Query: 180 KGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF E +K + P +++ Q KA+ +I + PDL I G + G+TLG A Sbjct: 209 EGFMERMKEKYPDIKVLPVQYSDGDPQKAMDKTIDMIQANPDLAGIYGTNEGSTLGVANA 268 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + +QN GK+ V G D T I L+N V++ V ++G ++ QA Sbjct: 269 IDSQNLKGKVKVIGFDSTEAIINFLKNG-VIQGFVVQDAYQIGYQGIKTLNAALSGQA-V 326 Query: 299 EKVIQVPIDLY 309 EK I +P+ Sbjct: 327 EKEIDIPVKFV 337 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 144/317 (45%), Gaps = 20/317 (6%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQV 62 ++ T +L A G+ FA+ ++TI A+ T ++ + G++DAA+ +V + Sbjct: 2 RLLTASTAVLAALAWGTLGFAQ----QLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNL 57 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 L ++ D+ + L+ R A++++A++ +++A++ IP++ + + Sbjct: 58 ILQAVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNL 117 Query: 123 NQKGVDK---YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ--PKIAVINCEAFE-VCV 176 + + + ++ + D ++ G +AA+Y ++ K+ VI A Sbjct: 118 DPAVLQREGVKIAFSISSDN----RRAGASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGA 173 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 RR GF E LK P AQIVA G KA ++ + PDL AI + LGA Sbjct: 174 ARRDGFTERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRHPDLAAIYCANDTMALGA 233 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 V+AV + K+ V G+D ++ + + + L A V +G+ LKVI + Sbjct: 234 VEAVFAAGK--KVLVVGTDGNSDAVKSIRAGR-LNASVAQLPFLVGSRAIENVLKVIKGE 290 Query: 296 ADGEKVIQVPIDLYTKT 312 K+I VP + K Sbjct: 291 QVDPKII-VPTLVIDKA 306 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 14/292 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 AA +E+ IG + + + QG + + V+LI +A+ K+++ +D+ Sbjct: 39 TEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSF 98 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 VA+ VDA+I+S V + + V+ +AGIPVI + + +V + Sbjct: 99 VAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVWVGS--------SN 150 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGT 202 + G Y + KIAV+ Q R G+E VLK P +IV +Q G Sbjct: 151 ENGGEIEMKYVAEKLGGKGKIAVLRGPLGAFAEQGRFAGYETVLKD-YPDIEIVFDQTGN 209 Query: 203 V-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 ++A+++ E L+ + +L+AI+ ++ G LGA++AV+ + +I + G D + Sbjct: 210 WQREEAMALIENLLTAGTELDAIVCQNDGMALGALEAVKAAGKKDQITITGIDAIVDALD 269 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 ++ + L A G +K + + + +P +L TK Sbjct: 270 SIKAGE-LDATCFQDAIGQGTNALDMAVKAARGETV--ERMDIPFELVTKDN 318 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 135/325 (41%), Gaps = 24/325 (7%) Query: 4 KMRTTRNLLLMATLLGS----------ALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQ 52 + L++ A +L A + + ++ I + ++ V G + Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 53 DAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAG 112 A ++ V+V I + +I K+ V+ + + V A+ ++A+ + + ++A +A Sbjct: 61 KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120 Query: 113 IPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EA 171 IPV+ +++ + S+++ D G G A + K+A+++ Sbjct: 121 IPVVTFDSNVKG----DITSSFIATDNKVAGAMAGEQLAKLI----NGKGKVAIVSHNPG 172 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGG 230 ++R GF E L ++ P +I+ Q KA+++ +I + PD+ I G + Sbjct: 173 TTTAIEREAGFREAL-AKYPDIKILNTQFSDGDKSKALAITLDIINANPDIAGIYGTNEP 231 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 + G K V + GK+ + G D + ++A+ LE V+ +V MG Q K Sbjct: 232 SIFGIAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKG-VISGLVIQDPYNMGYQTVQQLYK 290 Query: 291 VINKQADGEKVIQVPIDLYTKTEDG 315 ++K EK I L TK Sbjct: 291 -LSKGEKVEKRIDTGAILVTKENIN 314 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 128/308 (41%), Gaps = 16/308 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 M+ + +A L SA F A+ E + A L + +Y + G+++ AK + ++ Sbjct: 1 MKNLKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLK 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + A D++K+ ++ + +NVDAI++S V G +++A A IPVI + Sbjct: 61 VSV--ANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAE 118 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 + +++ D G G A + + ++ +++ R +GF Sbjct: 119 NSK----IVSHIATDNYGGGVVAGKLA----VKQLGGKGQVVMLSYPGISSVEARLQGFR 170 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + + +IVA Q G +++++ ++ + PD + I +GA AV Q Sbjct: 171 DAVAD--TDIKIVAVQPGKTREESMTSTINMLQANPDTDLIFAFGDDMMIGAGLAVTKQ- 227 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 K V G D E + ++ N + VV MG +N + + Sbjct: 228 -KSKAVVIGFDGMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPI 286 Query: 304 VPIDLYTK 311 VP+ LYT Sbjct: 287 VPV-LYTG 293 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 133/295 (45%), Gaps = 15/295 (5%) Query: 27 AEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 AE + I + + ++ +++G++ A ++V +I +++ D+ ++ ++ L++ Sbjct: 41 AEGQAEIAIVLKTLSNPFWVEMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLS 100 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY---VSAYLVGDPLEF 142 + AI ++ +S + + A++ GI V+ + ++ + + K V A++ D + Sbjct: 101 KGYKAIGIAPLSPVNTIPAIVEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNV-- 158 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEG 201 K+G A+Y I + ++A+I ++ + RR+G E K+ + + Sbjct: 159 --KVGAKGAEYIIGKLPEGGEVAIIEGKSGNASGEFRRQGATEAFKADSKFKLVASQPAD 216 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 KA+ V LI P+L AI + LGAV+AV N + G+I V G+D E Sbjct: 217 WDRSKALDVAANLIQKYPNLKAIYACNDTMALGAVQAVANAGKTGQILVVGTDGAPEART 276 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-----KVIQVPIDLYTK 311 ++ + L A V +G ++ I + K + V +L +K Sbjct: 277 SIDEGK-LNATVAQDPAMIGATSLKILIEAIKDKPQISPDIEAKEVPVESNLISK 330 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 18/293 (6%) Query: 25 RAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + + IGA L Q + V ++ AK+ V+ LI +A+ K+ V++ Sbjct: 26 ESGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVE--LITVDAERSALKQVEQVESF 83 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + + VDAII++ SS ++ A +A IP+I N+ + K +A++ D E Sbjct: 84 IGQGVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSETSAKP-----TAFVGSDDTESA 138 Query: 144 KKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG- 201 + A Y + I +++ ++R G +++LK+ PG +++A Q G Sbjct: 139 R----IAMKYIAEKLGGKGNILMMHGFMGQAAQIKRDNGAKDILKAN-PGLKLLAEQSGE 193 Query: 202 TVLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 K +S+ E I S D +NAI ++ +GAVKA+ GK+ V D + Sbjct: 194 WDRAKGMSLTENWIQSYGDKINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDAL 253 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 Q ++ L A V + K+ G +K K+A EK + +P L K Sbjct: 254 QAVKKGT-LDATVFQNAKEQGGKAIETAVKAAKKEA-FEKEVLIPFQLVDKGN 304 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 129/315 (40%), Gaps = 20/315 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA--AEKEMTIGAIYLDTQGYY-AGVRQGVQDAAKD 57 M ++ R L ATL+ A+ A A+ ++ IG + + +G + A + Sbjct: 1 MTSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAE 60 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 V LI T+ D SK+ V++L+A+ + +++S ++E + V+ A +AGI V+ Sbjct: 61 HYPDVDLIVTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVT 120 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCV 176 + +N V+ ++ G+ L G G A + I + + Sbjct: 121 LDRKVNTP-----VTVHVGGENLPLGVGAGEFLAK----KLNGKGNIIELQGTAGASATI 171 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIST--PDLNAIMGESGGATL 233 R KGF E + ++ P ++VA+Q DKA+ E ++ + A+ + L Sbjct: 172 DRNKGFAEAI-AKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMAL 230 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 GA++ + + ++AV G D + ++ ++ V + KV Sbjct: 231 GAIQVLEAAGRLNEVAVVGIDGQETAFEAVKQGKLAATFVYPF---VAPEGIETAYKVAK 287 Query: 294 KQADGEKVIQVPIDL 308 + E + + + Sbjct: 288 GEEVPETITLPTVSV 302 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 135/310 (43%), Gaps = 19/310 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 MR + L++ L S + A+ + T+ + ++ ++ G + AK+ Sbjct: 1 MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGY--N 58 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 LI ++Q D SKE + V+ L R V AI+++ + S +R A+ + IPV+ + + Sbjct: 59 LIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGF 182 + V +++ D + G+ G+ + A K+ + +R +GF Sbjct: 119 RGE----VVSHIASDNVVGGEMAGH----FIEAKIGSDAKVIQLEGIAGTSAARERGEGF 170 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 +K Q++A+Q K ++V E L+ + PD+ A+ ++ LGA++A++ Sbjct: 171 MNAVKG--SKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQA 228 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 ++ + + G D T + +E Q L A V +G K++ + E Sbjct: 229 SGKS--VMIVGFDGTDDGIAAVERGQ-LAATVAQQPDMIGAIGIETADKMLKGE-KVEAY 284 Query: 302 IQVPIDLYTK 311 I V + + K Sbjct: 285 IPVALKVIAK 294 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 91/316 (28%), Positives = 143/316 (45%), Gaps = 12/316 (3%) Query: 1 MPTKMRTTRNLLLMATLLGSALF-ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDS 58 M R L + T+L S F + A+ T + ++ Q ++ + +G QDAAK S Sbjct: 2 MLFHTGKLRLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKAS 61 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 + + N+ + ++ ++ + + V I+++A+ NG V+ A+ A IPVI Sbjct: 62 GKDLVIF--NSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAI 119 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 + + +A + D +E G+ +G DY Q ++ ++ + QR Sbjct: 120 DAVLPAGPQ----AAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQR 175 Query: 179 RKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +KGFEE LKS P I +G V DKA++ E LI PDL AI A LGA+ Sbjct: 176 QKGFEETLKSN-PKITIANVVDGQNVQDKAMTAAENLITGNPDLTAIYATGEPALLGAIA 234 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 AV NQ + I VFG D+T + ++ V AV+ +KMG L I Sbjct: 235 AVENQGRQKDIKVFGWDLTAKAISGMDGGYV-TAVLQQDPEKMGAEAL-NALNSITSGKT 292 Query: 298 GEKVIQVPIDLYTKTE 313 K I VP + TK Sbjct: 293 VPKTILVPATVVTKAN 308 >UniRef50_C0C5Z0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Z0_9CLOT Length = 322 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 135/325 (41%), Gaps = 20/325 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA----------AEKEMTIGAIYLD-TQGYYAGVRQ 49 MP K+ ++ ++ L + FA + K M IG D T + + Sbjct: 1 MPGKITRVCFVICLSCFLAACSFAGSLGEDTAHKEKTAKGMKIGVCMSDMTHTTFIEMLD 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 + A V++ IE ++ D ++ +A DAII ++ S V A Sbjct: 61 QMHRKADKLGVEI--IEFSSDSDPGNMVEGLENFIAAGCDAIIFQNFDQDASEYVVSEAV 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 + GI VI Y+ + + V D + G +G+ A D+ N + +A+ + Sbjct: 119 KKGIIVISYDNYSDA------ATYVYVADNEKLGFAIGHMAGDWINENLGGRANVAICDY 172 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESG 229 R EE ++ R P ++IVA Q+ +LD+ ++ GE L+ + PD+N + G + Sbjct: 173 SLINFLNNRADYIEEGIRERAPESKIVARQDAGLLDQGVNFGEILLQAHPDVNVVAGVND 232 Query: 230 GATLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 LG +A + ++ G IA+FG D T E + + + V + V K+ G +F Sbjct: 233 NGVLGVKEAFESAHKTGPSIAMFGCDATEEGIKAIREDSVFRGTVYFDLKQAGEDMFMAA 292 Query: 289 LKVINKQADGEKVIQVPIDLYTKTE 313 + ++V+ + K Sbjct: 293 VNAYLGDPGEKRVVTFQMVPIMKDN 317 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 68/294 (23%), Positives = 123/294 (41%), Gaps = 20/294 (6%) Query: 29 KEMTIGA-IYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 E+ IG I Y+ + ++ AK+ + ++ + ++AQ D + + V +++N Sbjct: 47 NELNIGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTV--SDAQNDSATQLNNVQNFISQN 104 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VDAI+++ V + ++ A+ A IPVI + N V + D + GK Sbjct: 105 VDAILINPVDSDAIVPAIKAANNAHIPVIAMDRGSNGGT----VLTTVASDNVAAGKMAA 160 Query: 148 NAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLD 205 A N K+ ++ + R KGF +++ G I+++Q Sbjct: 161 QAVEKLVGKNV----KVLELSGTPGASATIDRGKGFNS--EAKTLGLNILSSQSANFDRT 214 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 ++ + ++ S D+ AI ++ LGA KAV+ Q KIA+FG D +E ++ Sbjct: 215 TGLNTTQNMLQSHKDVQAIFAQNDEMALGAAKAVQATGQ--KIAIFGIDGESETHDAIKA 272 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE-DGKQW 318 + A + K+G T + +I PI L K D QW Sbjct: 273 GT-MTATIAQQPAKIGEMALQATYDYYQGKKIAH-MINSPIYLVDKDNVDQHQW 324 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 139/312 (44%), Gaps = 14/312 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 ++ +L L A+ A AA E ++ +Y + ++ A+ +V +++ Sbjct: 3 RKSLSRILFSGVAL--AMMAGAASAEGIGASLLTQQHPFYIALADAMKKEAQAENVPLEV 60 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + A D+SK+ V+ + + VD II+S V G + +A +AGI VI + N Sbjct: 61 --SIANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANN 118 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEE 184 V++++ D G+K A ++ +AVI+ + V R +GF++ Sbjct: 119 VD----VTSFVGTDNFAGGEKAAELMAKTI----GEKGNVAVIDYPTVQSVVDRIEGFKK 170 Query: 185 VLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 + ++ P +IVA Q G +A+S + ++ + PD+ I G A L A AV++ Sbjct: 171 GI-AKYPDIKIVAIQPGITRPEALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAKL 229 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 ++ V G D E ++N+ V+ V+ +MG KVI + K V Sbjct: 230 ENQVKVIGFDGMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPIV 289 Query: 305 PIDLYTKTEDGK 316 P + TK + K Sbjct: 290 P-GVVTKDGETK 300 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 15/303 (4%) Query: 22 LFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFV 80 A A + ++T G + + T Y+ ++ G Q+A ++ DI + + + Sbjct: 42 SAADAPDDKLTFGLVVMSTNSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLM 101 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + L+ VDAI+L+ + + + V +A +AGIPVI ++ +N ++++ D + Sbjct: 102 ENLINSKVDAILLTPLDSDALAAPVEKAMDAGIPVIVIDSAVNTDK----YTSFIATDNV 157 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQ 199 G+ A + I + ++ V+N A R +G EE + V G ++ Q Sbjct: 158 AGGRM----AMERLIESIGGSGEVVVVNALAGIPSNDARGQGAEEY-AATVDGITVLPQQ 212 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 +A++ E +II P+L I LGA +A+ ++ +AG+I + D + Sbjct: 213 HCLDQAEAMTATENVIIGNPNLKGIFATFNRGALGAAQAIVSKGKAGEIKMVAFDADADE 272 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWL 319 + LE+ + A+V +MG +K +N + + V ++ T+D Sbjct: 273 IKLLEDGTI-DALVVQQPYEMGKIGIEYAVKALNGEEVPKTVAP---EVVIATKDNMNDE 328 Query: 320 ATH 322 A H Sbjct: 329 AIH 331 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 128/317 (40%), Gaps = 20/317 (6%) Query: 8 TRNLLLMATLLGSAL-------FARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 R LLL + ++ A AA + ++ + G++ + Sbjct: 20 LRRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGD 79 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 +L+ +AQ K+ + ++ + AI L+ V+ T+ A A IPVI + Sbjct: 80 --RLVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDA 137 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 + + V A + D + G+ A D Q K+A++ + CV R Sbjct: 138 PVPDADL---VLAQVASDNVAAGRLAAQALGDA-----RPQAKVAILQYSVNKACVDRVA 189 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAIS-VGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF +VL PGA I+A Q+ +A V L+ PDL+A+ + +G V A+ Sbjct: 190 GFTDVLAKSFPGATIIARQDVKGTSEATRPVMRDLLGRFPDLDAVFPINDPGAIGCVSAI 249 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 ++GK+ V D + E AQ + N + KK+G+ + + + Sbjct: 250 DAAGRSGKVLVVTVDGSREAAQFILNGGIHS-TSAQFPKKIGSLAAGAAYDHLAGK-PVD 307 Query: 300 KVIQVPIDLYTKTEDGK 316 K I+VP+ L TK + Sbjct: 308 KEIKVPVTLVTKANAAE 324 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 197 bits (500), Expect = 5e-49, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 16/288 (5%) Query: 30 EMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 E IG L +Y + + +Q+ A+ + + I +A D +K+ V + + V Sbjct: 53 EKVIGVSLLTREHVFYNLIEKAIQEKAQ--GYKFKPIIMDASQDSNKQLAQVQDFITQKV 110 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 DAI+L+ + G + V A +AGIPV + V +++ D GK Sbjct: 111 DAIVLAPTASAGIAPAVDLAKKAGIPVFTIDIKAEGD-----VKSHVATDNYAGGKLAAK 165 Query: 149 AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKA 207 AA+ + + K+A+I + CV R KGF++ L P ++V + + +KA Sbjct: 166 YAAEKVL---NGKGKVAIITYSEVQSCVDREKGFKDALAE-YPNIKVVDVENCSGSAEKA 221 Query: 208 ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ 267 ++ + +++ PDL+ I +GAV ++ + + V G D E QE++N+ Sbjct: 222 ANLTQDILLKFPDLDLIFAVGDPFAVGAVSTIKAAGR--NVKVIGFDGNPEAIQEIKNHG 279 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 + A V ++G V N ++ +V+ +P + + Sbjct: 280 LWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQVL-IPPTIVDASNAK 326 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 197 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 122/293 (41%), Gaps = 16/293 (5%) Query: 24 ARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 + + + T+G L T ++ + ++ V+++ + + D++++ V Sbjct: 44 TKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVV--SGEFDVARQKNQVKD 101 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + AI+L G ++ A+ AGIPV + G + V +++ D L Sbjct: 102 FIVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAPGAE--VVSHIATDNLGG 159 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPG-----AQIVA 197 GK+ A + + K+ +++ +A E C+ R +GF+EV+ IV+ Sbjct: 160 GKQAAEAMIEAVGSA---GGKVVILDFKAAESCILRVQGFKEVIDKHNSENPSSAITIVS 216 Query: 198 NQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 G DK+ E + + PDL I + + LGA A+ N+A ++ + G D Sbjct: 217 ELPGDGQKDKSYKAAEDALQAHPDLAGIFAINDPSALGARAALEKANKADQVKIVGFDGQ 276 Query: 257 TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLY 309 + Q ++ ++ + ++G V A + + + K +P LY Sbjct: 277 PDGMQAIDEGKIFADPI-QHPDQIGKRVAASIVSYFRGE-EVPKEQLIPTGLY 327 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 135/322 (41%), Gaps = 18/322 (5%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLI 65 LL+ AT +A + IG + Q ++ ++ GV+ A++ ++V ++ Sbjct: 2 KLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVV 61 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 +A+ D + + + V L+ +++DA I ++ R A EAGIPVI + Sbjct: 62 --DAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGA 119 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEE 184 D ++ G+ +E A + I K+A+I+ + V R G + Sbjct: 120 PGD----TFIAGESVESAY----AVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKR 171 Query: 185 VLKSRVPGAQIVANQEGTVL--DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + G +++ Q + D+ S+ + ++ + PD+ I G++ G +GA KAV Sbjct: 172 AIDEN-KGVELIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVA 230 Query: 243 NQAGKIAVFGSDMTTEIAQELEN-NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 N + K+ + G D + L A S +KMG L V + E+ Sbjct: 231 NLSDKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEER- 289 Query: 302 IQVPIDLYTKTEDGKQWLATHV 323 Q P + T ++ +++ H Sbjct: 290 -QTPNAVLTTCDNAPEFVKNHP 310 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 129/313 (41%), Gaps = 14/313 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLI 65 L++ ++L L A K++ IG + +RQ +Q K V Sbjct: 1 MKLKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDG-NVSGQ 59 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 +A+GDI+++ ++ V++ VDAIIL+ V G ++ A A IP++ N + Sbjct: 60 FEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRR--PE 117 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEE 184 AY+ D GK A + + ++ E + E R +G EE Sbjct: 118 VTLPAGMAYVGSDSKLAGKLQMEELAKLM----NGKGNVMILMGELSNEATRDRTRGVEE 173 Query: 185 VLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 V ++ PG +I+ Q +A+ + ++ ++AI + +GA+ A++ Sbjct: 174 V-AAKYPGIKILDKQTAKWGRKEAVDITTDWALTGQQIDAIASNNDEMAIGAILALKQAK 232 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 ++G + V G D T + + ++ L V K G ++++ + E + Sbjct: 233 KSG-VLVAGVDGTPDALEYIKKGD-LALSVFQDAKGQGEGAVQTAIQLVKGE-KVESNVL 289 Query: 304 VPIDLYTKTEDGK 316 +P L TK + Sbjct: 290 IPYQLITKANYQE 302 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 118/296 (39%), Gaps = 14/296 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A + TIG + + +G++ A++ L+ +AQ D + T ++ L Sbjct: 38 ASKKDGGYTIGCTVYYMTEFVTLMTEGMEKKAEELGCD--LVMLDAQQDAQNQITQIENL 95 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 +A+ VD II++AV + + +AGIP++ N N + YV V Sbjct: 96 IAQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYHYVGPDDV------- 148 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 G I + + ++ +QR +G + +L ++A+Q Sbjct: 149 -LAGELEMQNAIDEIGGEGNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTAN 207 Query: 203 V-LDKAISVGEKLIISTP-DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 ++A+++ E + + ++AI+ + LGA++A+ KI V G D + Sbjct: 208 WSREEALTLVENWLETFSGKIDAIVAHNDEMALGAIQALEAAGLTDKIVVTGVDAILDGC 267 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 +++ +L V G+ + V+ + +++ + + TK + Sbjct: 268 NAVKDGTLL-GTVYQDAGLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITKDNVDE 322 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 18/296 (6%) Query: 13 LMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGD 72 L+ +L ++ FA A + + ++ +++G++D AK V V + + ++GD Sbjct: 12 LVGLMLSTSAFAAAEYA----VVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGD 67 Query: 73 ISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK--- 129 + + L +N I + +S V RA + GI ++ + I+ + K Sbjct: 68 FQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGG 127 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKS 188 V A++ D + G K + D A ++A+I +A + RR G E K Sbjct: 128 NVEAFVTTDNVAVGAKGASFIIDKLGAE---GGEVAIIEGKAGNASGEARRNGATEAFK- 183 Query: 189 RVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 + ++VA+Q KA+ V ++ P++ AI + +G +AV N + GK Sbjct: 184 KASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGK 243 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 + V G+D E + +E Q + A V + +G A LK++ KVI Sbjct: 244 VLVVGTDGIPEARKMVEAGQ-MTATVAQNPADIG----ATGLKLMVDAEKSGKVIP 294 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 140/325 (43%), Gaps = 21/325 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSAL-----FARAAEKEMTIGAIYL-----DTQGYYAGVRQG 50 M R + ++ + A L+ A+ +A + E T+ I ++ + G Sbjct: 1 MSEYRRRSASVAIAAILIVVAVVGIYKWAASQRTEKTVDIIVTVKAKSSAIDFWKVLITG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 V+DAA + V +I ++ +I ++ + + + DAI+++A N ++ + Sbjct: 61 VEDAANEFGANVTVIGPPSETEIDTQTEQLKQAIRQKPDAIVMAATDYNRLVPVAQQIVK 120 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC- 169 AGI +I ++ IN +++ D + G+K G A + K+A+++ Sbjct: 121 AGIKLITVDSRINSDDA----LSFIATDNIAAGEKAGEEMAKLLPESS--SSKVAIMSYV 174 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGES 228 ++R KG + L+ ++ + +KA + ++L+ P + I+G + Sbjct: 175 YGTSSQLEREKGVRQWLEGHS-HIEVASTLYSEGRLEKAYELTKELLSEDPGIKGIVGLN 233 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 +T+GA +A+R+ +GK+ + G D + + + +E VL+A + MG Sbjct: 234 EPSTVGAGRAIRDLGLSGKVKLVGFDSSVDEVKLIE-GGVLQATIVQKPYNMGYLSVKTA 292 Query: 289 LKVINKQADGEKVIQVPIDLYTKTE 313 ++ + + K+I + K Sbjct: 293 IEAVRGK-KVPKLIDTESVIINKDN 316 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 122/301 (40%), Gaps = 15/301 (4%) Query: 27 AEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 ++ G + +D T ++ + +G AA+D +V + D + + ++ + Sbjct: 56 GADKIVCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFD--NQISLIENFIE 113 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + VD I++ + G + +AS AGIP I ++ + Y + Y + E + Sbjct: 114 QGVDCILVDPLDSEGLKPVIEKASAAGIPTITMAGQVDVET--NYTTVY---NDEENTRI 168 Query: 146 LGNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTVL 204 + A ++ K A++ + R+KG+ ++ + P +V Sbjct: 169 IAEMTAKMI----GEEGKTALLYGNKGNLVSDLRQKGYYAGME-KYPNITVVEQPTNWDP 223 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 + + LI + PDL AI S TL A +AV+ + G+I V D + + +E Sbjct: 224 PTGMKAAQDLIAANPDLKAIHCISDAVTLAAYQAVKTAGKEGEIIVTSYDGNDDALKAVE 283 Query: 265 NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVD 324 + Q + V KK G L++ + EK++ + E+ ++ ++ Sbjct: 284 SGQ-FTSTVLTGAKKTGYWNIQVALQLASGVRPAEKILNLDTHFVMTDENKAKFAEMGIE 342 Query: 325 G 325 G Sbjct: 343 G 343 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 121/313 (38%), Gaps = 13/313 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLI 65 TT LL + + A + IG + + ++ ++ G ++ A+ ++ + Sbjct: 29 TTVGLLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFT 88 Query: 66 ET--NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 T N + D + + + LV D I+L+ V +A +AGI VI + ++ Sbjct: 89 ATGINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALD 148 Query: 124 Q--KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 + K A+ D K G A A K+AV+ + VQRR Sbjct: 149 EATKKAAGIDLAFFGPDNRAGAKMSGEVLAKALGA----GGKVAVLEGNPEADNAVQRRL 204 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 GF++ + +VA + S+ + PDL IM + GAV+A+ Sbjct: 205 GFDDAIADGSLNL-VVAESGHWETSEGQSITAAWLKKYPDLQGIMCANDSMAFGAVQALE 263 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 N KI V G D + +++ ++L A V+ G +M + + + Sbjct: 264 AANLLDKIKVVGFDNIPAVQPLIKDGKML-ATVEQYGAQMAAIGMDYGYRTLKGE-KFSG 321 Query: 301 VIQVPIDLYTKTE 313 I+ + L TK Sbjct: 322 WIRTELKLITKDN 334 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 14/303 (4%) Query: 19 GSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 SA A + TIG + + Y+ + G + A+ V++++ + + Sbjct: 60 SSAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQL 119 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK--YVSAYL 135 ++ ++A VD I+L S +G + + EAGIP+I +T + + + + Sbjct: 120 GIIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFY 179 Query: 136 VGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQ 194 + E K G A F K A++ E R GF E Sbjct: 180 GTNNYEGAKLAGEYVAKNFEKGT----KTAILKGIEGQTNAADRYNGFIEGAGDT---VT 232 Query: 195 IVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS 253 +VA Q +D+ + + +I + PD+ + +GA++A++ N +I + G Sbjct: 233 VVAEQTANWEVDQGYTAAQNIISANPDVELFFCCNDNMGIGALRAIKEANMQEQIQIIGF 292 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 D +E +EN + L A V +MG LK+ + + E I ++ TK Sbjct: 293 DAVSEALNLVENGEFL-ATVAQYPAEMGKLGVDNMLKIFDGG-EAESYIDTGTEVITKDN 350 Query: 314 DGK 316 G+ Sbjct: 351 VGE 353 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 13/289 (4%) Query: 19 GSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKEST 78 + A E + IG + GY+ VR+G+ AA +++V++ ++A D SK+ + Sbjct: 28 AAGNTAETKEAKKKIGVLIPGPVGYFVAVREGIDKAAAENNVEITY--SDAGWDASKQLS 85 Query: 79 FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVS--AYLV 136 V+ L+++ VD I ++AV N + VR A+EA IP++ + I K +Y Y+ Sbjct: 86 QVEDLISKKVDLIAIAAVDSNAAKTAVRMANEANIPILAFTNAIGDKENGEYEGLITYVG 145 Query: 137 GDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQI 195 + +E GK G A K+ +I + RRKG E L + + Sbjct: 146 QNEVETGKLTGELAKSLLGEK---GGKVVLIEGRPGTSPQINRRKGVMEALDTNKNFEVV 202 Query: 196 VANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDM 255 ++A+ + E LI ++ I+ + + +GA A++ N KI V G Sbjct: 203 YTQTSNWEKEQALKIVEDLIQKNQTIDVIIAQDDNSAIGAGMALKEANLKDKILVIGLGG 262 Query: 256 TTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 +TE +++ ++ +S + G +K +N GEKV V Sbjct: 263 STEGLNAVKSG-LIDGTTYMSAVEEGYTAITAAVKYLN----GEKVEPV 306 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 194 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 13/291 (4%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 AR GA Y+ T +Y + ++ + + L+ +A D +K+ + Sbjct: 37 ARQIGSRKKFGATYMTTNNRFYEIINDEIRSVVESNGD--ILVTRDAALDKNKQMQQIYE 94 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + V AI ++ V + A AGIPVI +T + DK V+ ++ D + Sbjct: 95 FIKLKVKAIFINPVDWKQIKPALIAAKNAGIPVIVVDTPVYD---DKLVACTVISDNYDA 151 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 G + A Y + +K + I +I + + R KGF + + + + A Sbjct: 152 GVQ----CAKYLMKSK-SKANIMLIEHSKAKSGIDRIKGFVDTIGASKQYKIVAAGDSEG 206 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 LDK +S+ + LI +++AIM + + LGA+ A++ GK+ VFG D + E Sbjct: 207 QLDKTMSLVDDLIKKHTNVDAIMALNDPSALGALAALKENGLLGKVMVFGVDGSPEAKTM 266 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + + + A K+G+ + ++ + VI VPI L +K Sbjct: 267 IHDG-FMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDVI-VPISLISKEN 315 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 193 bits (490), Expect = 8e-48, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 139/315 (44%), Gaps = 17/315 (5%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYL-----DTQGYYAGVRQGVQDAAK 56 ++ T L+ A ++ + + A + IY+ +T ++ V G + AA+ Sbjct: 5 KKEIITVAILMAAAVVIFAGILKPEATQTKKCSLIYIPKIRDNTNDFWTSVISGCKMAAE 64 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 + ++++ + + +I +++ + + + DAI+ S S + S ++ A E GI + Sbjct: 65 EYESDLEILAPDKEENIEEQNKLLKKAIEQKPDAILFSPSSMDSSDELLKEAKEKGIRIT 124 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVC 175 ++ +K D V+ D + G+ LG A + KIA++ + + Sbjct: 125 YIDSYTKEKLQDLTVA----TDNVNAGRMLGEYARKLIDKDS----KIAIVSHVKGVSTA 176 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 V+R +GF E L + ++ +K+ + ++L+ PDL I G + + +G Sbjct: 177 VEREQGFREGLGDYADNIVDIVYC-NSLYEKSYELAQELMRKYPDLELIAGMNEYSAVGV 235 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 +AV + KIAV G D + E +E V K ++ +MG +T+ ++N Sbjct: 236 GRAVSDAGAKDKIAVVGVDCSQEAINLMEMG-VYKGIIVQKAFRMGYIGVEETIHMLNGD 294 Query: 296 ADGEKVIQVPIDLYT 310 A EK I +L T Sbjct: 295 A-VEKNIDSGCELVT 308 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 61/288 (21%), Positives = 120/288 (41%), Gaps = 15/288 (5%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNA 69 L L A +G L Q +Y + +G+++ A + V+L Sbjct: 15 ALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDA--G 72 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 + D++++ ++ + V AI++ G + RA++A IPV + + Sbjct: 73 EFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKEGA--- 129 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSR 189 V +++ D + G+ G AA + ++A+I+ + ++R +GFEE LK Sbjct: 130 -VVSHIASDNVAGGRLAGEYAAKRL----NGRGQVAIIDQPYIQSVIERVRGFEEALKP- 183 Query: 190 VPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKI 248 P ++VA G V D+++ E L+ S L+A+ + + G V A+ + G I Sbjct: 184 YPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRKG-I 242 Query: 249 AVFGSDMTTEIAQELENNQ-VLKAVVDISGKKMGNAVFAQTLKVINKQ 295 V G D + E + + + L+A + ++G + Q Sbjct: 243 FVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQ 290 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 136/309 (44%), Gaps = 16/309 (5%) Query: 19 GSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 G A K++TIG + Q ++ ++Q V AK ++V I ++A+GD + + Sbjct: 29 GGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKV--IVSDARGDAATQV 86 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG 137 + ++R V AII + V+ A+ A IPV+ + + +++ Sbjct: 87 NQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGK----SFIAS 142 Query: 138 DPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIV 196 D + + LGN Y + + ++A++ + V R+KGF + LK PG ++V Sbjct: 143 DSVAAARTLGN----YVVKESGGKGQLAILQGQIGTTPQVDRQKGFGQALK-NAPGIKVV 197 Query: 197 ANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDM 255 + Q DKA SV + ++ + P ++ + G++ LGA +AV+ K + G D Sbjct: 198 SQQPADWAQDKAYSVSQDMLQAHPGIDILWGQADAMALGAAQAVKASGSKKKHLIVGFDG 257 Query: 256 TTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 + + V +V +KMG + +I + + +Q L +K + Sbjct: 258 DIAGLKAVRRGTVDATMVQQ-TRKMGRMSVNTAVDIIKGKKVPAQQLQPAFLLTSKDKKK 316 Query: 316 -KQWLATHV 323 Q++ TH Sbjct: 317 ATQFINTHP 325 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 141/321 (43%), Gaps = 20/321 (6%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEK------EMTIGAIYLDTQG-YYAGVRQGVQDAAK 56 ++ L+ M+ +L + + A +K + I I T Y+ V+ G + AAK Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 ++ + + DI E V+ + + VD I+L+A + V A A IP++ Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVC 175 ++ ++ V++++ D + + + A+ K+ V+N Sbjct: 121 TVDSGVDSDK----VASFIATDNEKAASQAADVCAELI----GKSGKVGVVNFVPGVSTA 172 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLG 234 VQR KGF + + S+ G +++ Q + KA+++ E ++ + PD+ AI + + LG Sbjct: 173 VQREKGFRDGM-SKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVKAIFAANNRSALG 231 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 +A++ + AGK+ V D + + +E+ + A++ + KMG L ++ Sbjct: 232 VAQALKGKGVAGKVKVVAFDADPDEIKGIEDGSI-TALIVQNPYKMGEEGVKNVLALMKG 290 Query: 295 QADGEKVIQVPIDLYTKTEDG 315 + EK I + + TK Sbjct: 291 ET-VEKRIDTGVTIVTKENIN 310 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 16/307 (5%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIET 67 N L+ T + ++ + IGA Y+ +Y+ + + + K+ QLI Sbjct: 24 SNYLINTTTQSNMIYNST--EPRKIGATYMTYNNTFYSVINEEISRILKEHGD--QLIAL 79 Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 ++ + K+ + L+ + VDAI+++ V G +++ A IPVI +T + Sbjct: 80 DSAMSLKKQKEQIHYLIEQQVDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKH--- 136 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLK 187 +K ++ +V D + G + K+D I ++ R KGFE+ ++ Sbjct: 137 NKNITYSIVSDNYDAGVQCAKDMM-----RKLDHANIVLLQHSTTRSGYLRIKGFEDTIQ 191 Query: 188 SRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG 246 S ++V E L+ A+ E I + + +M + + +GA+ A+ + N Sbjct: 192 SN-ENYKVVKRMECDGQLEVAMPKMESFIEEGIEFDVVMCLNDPSAMGAMAALSSNNILK 250 Query: 247 KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 V+G D T E + + + + A V S K G K+ +++ K P+ Sbjct: 251 DKYVYGIDGTPEAKEMVVEGK-MAATVAQSPKTFGKKAGEVIYKLFSQETIKNKNEMSPV 309 Query: 307 DLYTKTE 313 + TK Sbjct: 310 QIITKEN 316 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 116/262 (44%), Gaps = 12/262 (4%) Query: 42 GYYAGVRQGVQDAAK--DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 ++ VRQG AAK + V VQ + D++ + + + + VD ++ +A Sbjct: 55 DFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQGVDGLVYAATDAK 114 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 ++A + GI V+ ++ + + + V D + ++ + Sbjct: 115 VLHDVTQQALDQGITVVNIDSGTDPQPENVPV---FATDNVAAAERATEYLVEQLGE--- 168 Query: 160 DQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIIS 217 D K+A I + R +GF+ VLK P ++VA Q + ++A+ V E ++ + Sbjct: 169 DGGKVAFIPFQPGTATNDTRTEGFKNVLKEN-PQVKLVAEQSSESNYNRALQVTEDILTA 227 Query: 218 TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISG 277 PDL+AI + LGA +AVR+ +AG+I + G D + + + V+ A++ + Sbjct: 228 HPDLDAIYAANEPGVLGAAEAVRSAGKAGEIIIVGWDTAPDELKAVREG-VVSALIAQNP 286 Query: 278 KKMGNAVFAQTLKVINKQADGE 299 +MG +K+I E Sbjct: 287 FRMGYDGVNAAVKMIRTGEQVE 308 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 124/305 (40%), Gaps = 11/305 (3%) Query: 13 LMATLLGSALFARAA--EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 L+A L G L A K IGA + Q + VQ+ ++ Sbjct: 5 LLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKLADSN 64 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 D + + V + +NVDA+++ R A +AGIP+I N N + + +Y Sbjct: 65 SDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEHM-QY 123 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRV 190 V++++ D +E G+ GN + + + ++ + +R +G EE+ ++ Sbjct: 124 VTSFVGSDEIEGGRIQGNFIVNTLAGKNAES--LILLGPLGQDAVTKRTQGNEEIF-AQH 180 Query: 191 PGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG-KI 248 ++V+ QEG D+ +++ E ++ +N I+ + +GA+ A R I Sbjct: 181 KNIKVVSKQEGRWERDRGLAIAENVLAGNKGINVIVSNNDEMAIGAILATRKLGIKDEDI 240 Query: 249 AVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 + G D T + + L + L A V S + G + K V VP +L Sbjct: 241 TIVGLDATPDALEYL--GKGLDATVFQSAQGQGYTGAEMAY-LAAKGEKVPSVKWVPFEL 297 Query: 309 YTKTE 313 T + Sbjct: 298 VTPDK 302 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 124/310 (40%), Gaps = 13/310 (4%) Query: 9 RNLLLMATLLGSALF-ARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDA-AKDSSVQVQLI 65 R LL AT+L +A+ +A + I I Y+ VR+G DA AK + + Sbjct: 24 RRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMTFQ 83 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 ++ ++ + V V + V AI+L+ + ++R+A EA IPV+ ++ I+ Sbjct: 84 GPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISDS 143 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEE 184 G KY ++L D G+ LG D+ K+A+++ + R GF + Sbjct: 144 GA-KYYQSFLATDNEAAGEALGKEMVDHV----GQTGKVAIMSYVPGVGSEIGRVGGFRK 198 Query: 185 VLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + QIV + + A++ ++ S PDL I + +G +A++ Sbjct: 199 YIAEHS-HIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFAANEMTAVGVGRAIQQAG 257 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 ++GK+ D + + + + + MG + V+ K + Sbjct: 258 KSGKLYAIAFDGNEDEQGFVRSGT-FQLLAVQGSYAMGAKGVETAIGVLTGAKP-TKYVN 315 Query: 304 VPIDLYTKTE 313 + T Sbjct: 316 TGVVFVTSAN 325 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 128/292 (43%), Gaps = 17/292 (5%) Query: 27 AEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 ++ G ++ +++ +++ ++ ++ +I +AQ D K+ + V+ L+ Sbjct: 64 GKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVI--DAQNDAQKQISMVEDLLT 121 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + +D + L + ++ + +AG+PV+ ++T + + V+ +V D G Sbjct: 122 QGIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDL---VNTIIVSDNYYAG-- 176 Query: 146 LGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVL 204 A+ + + K+ ++ + E C++R+ GF++ +IV+ +G Sbjct: 177 --ELVAEDMMKKLPEGSKVCILTSPSAEACIKRQNGFKDKADGYF---KIVSEIDGKGDT 231 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 ++ + E ++ PDL A + + +G V+A+ +Q + + V+G D Q + Sbjct: 232 ATSLGIAEDVLQGNPDLGAFYAINDPSAIGCVQALESQKKTD-VLVYGVDGQPMGKQAIS 290 Query: 265 NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 ++A S +G A K+++ + EK I VP L K + Sbjct: 291 EGT-MEATAAQSPINIGKESVAAAYKILSGE-SVEKNILVPTFLIDKNNVTE 340 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 8/287 (2%) Query: 33 IGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAI 91 IG + + + Y+ +++ + AK+ + V+++ + D+ + ++ +VA+ D I Sbjct: 52 IGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKKYDGI 111 Query: 92 ILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAA 151 I++ + + +A E GIPV+C +++ G+ K A + G K G A Sbjct: 112 IVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGL-KQAGAVMDGWITATFKDQGRLCA 170 Query: 152 DYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAIS 209 + ++A+I RR+G E + G ++VA + G ++A Sbjct: 171 EDMAEKLPSGSEVAIIEGIPGAGQSKARREGASEGFEKA--GLKLVAVEAGNWDRNRAYD 228 Query: 210 VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVL 269 + L+ + P L I + L AV A+ G + V+G+D E A+ +++ ++ Sbjct: 229 ITTNLVKAHPQLKGIYCANDVMALAAVDALEVAGIEG-VTVYGTDFIPEAAEAIKSGRLA 287 Query: 270 KAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + S TLK+I K D + + VPI L G+ Sbjct: 288 GST-TFSQAAWTRGTLVYTLKLIKKDEDLPEKLSVPITLVNGENIGQ 333 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 16/305 (5%) Query: 29 KEMTIGAIYLDTQGYYAGVRQGVQDAAKDSS----VQVQLIETNAQGDISKESTFVDTLV 84 + + +G + YY V GV++ +++ + ++Q + ++ + Sbjct: 69 RPLKLGFLPTAMDTYYQRVLAGVKEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWI 128 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 +DAI ++ +E ++RRA+EAGIPV +N+ + Y V D Sbjct: 129 NDGIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPFAD-------NPYYVSDVGYDQS 181 Query: 145 KLGNAAADYFIANKIDQP-KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GT 202 G A A + + D+ KI ++ QR KGF E++ S+ P +IVA Q G Sbjct: 182 DGGRAQAQWIVDTYGDKEVKIGILEGLPGPHTSQRMKGFNEII-SKHPNFKIVAQQPAGW 240 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 V + +SV E + + PD+ ++ LG ++A++ + GK+A+ G + E Sbjct: 241 VRAQGLSVTENMFTANPDIEVLVALYDEMALGGLQALKAKGLNGKVAIVGYENMKEANAA 300 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH 322 + A VD K+ G + + + K K I V +Y T K + T Sbjct: 301 ILTGD-FSATVDTGAKEEGRNIVRAVDEFLMKGNPLPKKIFVSPKVYDATNI-KTFDQTD 358 Query: 323 VDGLP 327 D +P Sbjct: 359 YDYVP 363 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 138/330 (41%), Gaps = 39/330 (11%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEM-------------------------TIGAI 36 T+M+ R L +++ +L AL A +K + IG Sbjct: 7 KTEMKKKRALRILSLILLCALTFTACKKNVGTPEDNAASKDENTEEKDKDEQESWKIGFS 66 Query: 37 YLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSA 95 +D Y+ + +++ +LI + + D +++ + ++ ++AIILS Sbjct: 67 GIDMENPYFLTLESAIKEEVD--GKNCELIVKDPKTDPDMQASQIQEMIDEGINAIILSP 124 Query: 96 VSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFI 155 V + ++ EA + ++ +T + + YV AY+ D G G I Sbjct: 125 VDWEKITPSLEALKEADVKIVNVDTQVKEMD---YVDAYIGSDNYNAGVLCGE----DLI 177 Query: 156 ANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKL 214 D K+A++ C +R GFEE L G +IVA ++ K++ +K+ Sbjct: 178 KRCPDGGKVAILECPTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQKI 237 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ-VLKAVV 273 + D+ AIM + +GA A+ + G+I ++G D + +I +EL+ + + V Sbjct: 238 LSENSDIVAIMCGNDQMAVGAKTAMNVA-EQGQILIYGVDGSPDIKKELKKTENQIAGTV 296 Query: 274 DISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 S MG L ++N + D EK I+ Sbjct: 297 AQSPISMGKDAANTVLNILNGK-DYEKEIK 325 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 128/304 (42%), Gaps = 14/304 (4%) Query: 13 LMATLLGSALFARA-AEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 L ++L SA+FA + A ++ IG + +R G++ AAKD SV VQ+ + + Sbjct: 4 LALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQI--EDGK 61 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 ++ + + +A VDAII++ V + + A AGIP+I N Sbjct: 62 NEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLPD 121 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSR 189 A++ + G + + V+ E + + +QR K +V+K + Sbjct: 122 NQAFVASNEEVSGTLQTEEVCRLL----GGKGNVVVMMGELSNQAAIQRTKDIHDVIKRK 177 Query: 190 -VPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-G 246 G ++VA Q K + + + + +A++ + +GA++A++ + Sbjct: 178 ECSGMKVVAEQTAEWSRLKGNDLMTNWLSAGLEFDAVISNNDEMAIGAIQALKASGRKMD 237 Query: 247 KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 + V G D T + +++ L V S K G +++ + +KV VP Sbjct: 238 SVVVAGIDATPDALAAMKSGD-LDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKV-WVPF 295 Query: 307 DLYT 310 +L T Sbjct: 296 ELVT 299 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 141/325 (43%), Gaps = 22/325 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEK-------EMTIGA-IYLDTQGYYAGVRQGVQDAAK 56 M+ T +L++ L A A +K + IG I + + +++ AK Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 + L+ NA+GD +++ + + LVA+ +AI++ V SS + A+++GIP+I Sbjct: 61 NL-PDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPII 119 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVC 175 N + + +AY+ D + G A+Y + + + ++ E Sbjct: 120 SVNNFLKNQD---DAAAYVGSDSITSGIME----AEYAVKQLNGKGNVVILKGEPNHETA 172 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLG 234 ++R +GF++VL+ P +I+ Q G + + E I + +AI+ + +G Sbjct: 173 IKRTEGFKQVLQ-NYPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILANNDEMAIG 231 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 A+ A++ N + V G D T + + L+ LK V + G+ K++ Sbjct: 232 AIMALKENNLINNVFVGGIDATPDALKLLKEGS-LKVTVFQNAAGQGSEAIKAAYKLVKG 290 Query: 295 QADGEKVIQVPIDLYTKTEDGKQWL 319 + K I VP +L D ++L Sbjct: 291 E-KINKKIFVPYELV-VPNDADKYL 313 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 190 bits (482), Expect = 6e-47, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 121/313 (38%), Gaps = 13/313 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSS-VQV 62 M+ L +L S+ A A+ ++ I I + ++ +R GV+ A ++ + + Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 D + + VDAI+++ + V +A GI V+ ++ + Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKG 181 + G ++V+ D G+ A+ + ++ ++ R +G Sbjct: 121 DGSGHLQFVT----TDNHASGQLAARQLAELM----GQRGRVVLLRTVAGSASTDDRARG 172 Query: 182 FEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 F + L + P IVA+ G KA L+ + D +AI + AT G ++A+R Sbjct: 173 FIDYLSANAPAISIVADVYGGGSAGKARHSASALLAKSADFDAIFAVNESATDGMLRALR 232 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 AG+ G D T + + LE ++ ++ +MG + + + E Sbjct: 233 EAGLAGRKRFIGFDSTPFLLEGLEKKEI-DGLIVQDPDRMGYLAIKAVVAALRNRPIKES 291 Query: 301 VIQVPIDLYTKTE 313 VI L T+ Sbjct: 292 VIHTGTTLVTRAN 304 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 125/293 (42%), Gaps = 13/293 (4%) Query: 24 ARAAEKEMTIGAIYLD---TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFV 80 + ++ I + + ++ G+ +G + A++ +++++ ++++ D ++ + Sbjct: 38 SSQNKRTYKIIMVPKTIDESNDFWTGLIEGAKLGAEEFGCEIEVVGSDSEDDYEGQNRLI 97 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + + +N DA +++ S ++ V+ A AGI VI ++ I+++ + + D Sbjct: 98 EESIKKNPDAFLIAPCSYTHTTEAVQEAINAGIKVILVDSVIDKEIAN----GVVATDNF 153 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 + GK+LG A K D V + + +R G E L Q + Sbjct: 154 KAGKELGTFAKTIL---KPDSKIGVVAHVKGSSTATEREDGIREGLGEDQNRIQDIVYC- 209 Query: 201 GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 + D A + EK++ P+++ ++G + + +GA + V+ ++ V G D + E Sbjct: 210 NSSYDLASDLTEKMLKERPEIDVVIGTNEYSAVGAARGVKKMGMEDQVKVVGFDNSVEQI 269 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 Q LE V + +V +G Q +K I E + L TK Sbjct: 270 QLLEAG-VFQGIVIQKPFNIGYLGVEQAVKAIEGY-PMEYNLDSGCKLITKEN 320 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 127/301 (42%), Gaps = 14/301 (4%) Query: 20 SALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETN--AQGDISKES 77 S A A K + ++ + G ++ K ++ Q L+ + D + + Sbjct: 26 SVARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQI 85 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV--SAYL 135 V+ ++ VDAI+L+ V++A +AGI V+ + ++ + ++ Sbjct: 86 RIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFV 145 Query: 136 VGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQI 195 D + + +G+ A K V QR GF++ +K+ GA++ Sbjct: 146 GPDNRKGARMVGDYLAKRL---KAGDAVGIVEGVPTTTNAQQRTAGFQDAMKAA--GAKV 200 Query: 196 VANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 V+ Q G +DK +V ++ P+L A++ + +GAV AVR + GK+ V G D Sbjct: 201 VSVQSGEWEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYD 260 Query: 255 MTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI---NKQADGEKVIQVPIDLYTK 311 I L++ +VL A D K LK + KQAD V+ P+DL TK Sbjct: 261 NINAIKPMLKDGRVL-ATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 319 Query: 312 T 312 Sbjct: 320 P 320 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 132/315 (41%), Gaps = 15/315 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ + L +LG E + + + ++ +++G+++ AK V V + Sbjct: 1 MKRFKTLKSCLAILGLVCSVSVYSAEYAV-ILKTLSNPFWVAMKEGIENEAKALGVDVDI 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + ++GD + + L+ +N I + +S +A GI ++ + I+ Sbjct: 60 FASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDI 119 Query: 125 KGVDK---YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRK 180 K + K V A++ D + G K D + ++A+I +A + RR+ Sbjct: 120 KNLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSE---GGEVAIIEGKAGNASGEARRR 176 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 G EV + ++VA+Q KA+ V ++ P+L A + +G +AV Sbjct: 177 GAREVF-VKSSSIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYVANDTMAMGVAQAV 235 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 N + GKI V G+D E + + + L A + +G A+ LK++ A Sbjct: 236 INAGKQGKILVVGTDGVPEARKMVSE-RKLTATIAQDPAMIG----AKGLKLLVDAARAG 290 Query: 300 KVIQVPIDLYTKTED 314 K I V ++ +T D Sbjct: 291 KQIPVDVEPKIETVD 305 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 66/296 (22%), Positives = 122/296 (41%), Gaps = 17/296 (5%) Query: 28 EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 + +M IG + D + G A + V+++ +A+ D + V+ L+A+ Sbjct: 43 DGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQG 102 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VDAI+ V + V RA +AG+PV+ N ++ AY+ D L+ G Sbjct: 103 VDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE-----DAYVGSDSLQAGTIQM 157 Query: 148 NAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEGTVLD 205 A + KIA++N + + R G ++V+ + PG ++V G + Sbjct: 158 EEVAAVLK----GKGKIAIMNGQMGHTAQINRTLGNKQVV-DQYPGMEVVIEGTGGWSRE 212 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 K + E I S +A++ + +GA+ A ++ G D T + + Sbjct: 213 KGKELMESWIESGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSK 272 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK---TEDGKQW 318 ++ +V K G Q +K+ + EK+ +P + TK E K+W Sbjct: 273 GKLTISVF-QDAKGQGQTGLEQAIKLAKGE-SAEKMTNIPYETITKRNVDEYKKKW 326 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 119/314 (37%), Gaps = 22/314 (7%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD---TQGYYAGVRQGVQDAAKDSSVQ 61 M+ + L + + A A T+ ++A V +G ++ A + V+ Sbjct: 1 MKLVKLFLASSLAIIIGTLAFA----DTVLLSMKGPGAGNPFWASVERGAREKAAELGVK 56 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 + ++ + D+ + V+ + + V AI ++ N ++ + A AGIPV+ +T Sbjct: 57 IVVLSPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTK 116 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 KGV ++ D K AAD+ +A++ R Sbjct: 117 GINKGV-----TFIGTDN----KAGAKMAADFICDRVSRGSDVAILQGIITQSTGKARAD 167 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 G LK G IVA Q + +V E ++ L A+ + LGAV+A+ Sbjct: 168 GAHAGLKG--CGLNIVAEQPANWDRAQGRTVMENILTRNQKLKAVFASNDNMALGAVEAL 225 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 ++ + + V G D + A+ + + + A + MG + L+ + K Sbjct: 226 KDADMLNDVIVVGFDANPDAAKSILAGE-MTATIAQFSYNMGAYGVEKALE-LAKGRSLP 283 Query: 300 KVIQVPIDLYTKTE 313 V+ L TK Sbjct: 284 PVVDTGTLLVTKKN 297 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 128/312 (41%), Gaps = 12/312 (3%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE-----MTIGAIYLDT-QGYYAGVRQGVQDA 54 M +M ++ L+ ++G A A + + I I + Q Y A + + A Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 KD +++V L+ + D ++++ + ++ D I++S V + V A +AGI Sbjct: 61 EKDLNIKVNLV--DGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIE 118 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFE 173 V T I + V VG ++G A D KIA+I Sbjct: 119 VCALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEALDRSGKIAIIEGTPGMS 178 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGAT 232 R+KG +E K P ++V+ G V+DKA + + +I S P++ ++ S Sbjct: 179 DTEGRKKGIDEENKE-YPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEVELVICHSDNMA 237 Query: 233 LGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI 292 +GA KA+ + + K+ + G + + ++ ++ + + T KV+ Sbjct: 238 VGAAKALEDADMTDKVKIVGIGGSKDALDLIKKGEIY-GTIMYVPETEAYTALEATAKVV 296 Query: 293 NKQADGEKVIQV 304 +A+ E V Sbjct: 297 RGEAEKETFYNV 308 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 133/334 (39%), Gaps = 30/334 (8%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETN 68 R LL+ +++ + A +TIG I Y++ V QGV+ A K V + Sbjct: 2 RKLLVFLSVVLITGLSLA----LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQ 57 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVD 128 + DI+ + +++ +A VD I ++ T+++A E GIPVI +T G Sbjct: 58 KE-DINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSG-- 114 Query: 129 KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFEEVLK 187 +YV Y+ D + G G + + K+ + +QR +GF++ + Sbjct: 115 RYV--YIGTDNYQAGYTAGLIMKELL----GGKGKVVIGTGSLTAMNSLQRIQGFKDAIA 168 Query: 188 SRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 + N E +A+S+ E + + PDL+A G V+N + GK Sbjct: 169 DSEIEIVDILNDEEDGA-RAVSLAEAALNAHPDLDAFFGVYAYNGPSQALVVKNAGKVGK 227 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNA-----------VFAQTLKVINKQA 296 + + D T +I Q ++ V++A + MG TL ++ K Sbjct: 228 VKIVCFDTTPDILQYVKEG-VIQATMGQRPYMMGYLSVTVLYLMNKIGVQNTLMMLPKVT 286 Query: 297 DGEK---VIQVPIDLYTKTEDGKQWLATHVDGLP 327 K VI +D+ T + G+P Sbjct: 287 VDGKVDYVIDTGVDVVTPENLDEYLKKMEELGIP 320 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 126/326 (38%), Gaps = 26/326 (7%) Query: 2 PTKMRTTRNLLLMATLL---------GSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGV 51 T+ N+ ++A + + A ++ M IG + T ++ + Sbjct: 3 TTRKNMIANVSVIAAVCVFGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTA 62 Query: 52 QDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEA 111 + K SV +++ A D+ +S +D + V I++ A +G V+RA A Sbjct: 63 ESYGK--SVGAEVLSQVANEDVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSA 120 Query: 112 GIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA 171 GIPVI + K + + D + G+ + AD + KIA++N Sbjct: 121 GIPVIGVDNQ------SKNATVNITTDNKQAGEISCRSLAD----KLGGKGKIAILNGTP 170 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGG 230 R G + +L + P +IVA+Q G D A+ + ++ + PDL+ + Sbjct: 171 VSAVDDRVTGCKGIL-GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGFFAINDP 229 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 + +G A + + + + D + + ++ A + + Sbjct: 230 SAVGVQLAAEQKGAS--VVITSVDGASSATDAIAAGGLITATAAQDPAALMRQAIDLGIS 287 Query: 291 VINKQADGEKVIQVPIDLYTKTEDGK 316 ++N + +KVI VP +L + K Sbjct: 288 IVNGKEPDQKVILVPTELVDASNVAK 313 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 135/307 (43%), Gaps = 14/307 (4%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNA 69 ++ +A L S + + + TIGA+Y+ Y+ + + ++ + ++ ++ Sbjct: 27 IVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLE--TRDS 84 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 D ++ V+ + VD I+++AV ++ +A +AGIPVI + I + Sbjct: 85 GMDAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNR---S 141 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSR 189 +V +V + + G++ + + KI + + + R KGF+E L+ Sbjct: 142 FVDGTVVSNNYQAGEQCAKDLM-----KRRKKGKILFLVQSENKSAIDRIKGFKETLEKA 196 Query: 190 VPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKI 248 + V E L+ + + EK++ T D++ +M + + +GA+ A+ ++ + Sbjct: 197 GWKYENVGELECQGQLELSQPLVEKVLNKTKDIDVVMALNDPSAMGAMAALDAEHMLSDV 256 Query: 249 AVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 V+G+D + E + N+ + A S + G K+++ + EK VP+ L Sbjct: 257 LVYGADGSPEAKTMIYENK-MAATSAQSPRTTGKKTVEMLYKILDGK-KTEKQCIVPVSL 314 Query: 309 YTKTEDG 315 TK Sbjct: 315 ITKDNIN 321 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 12/281 (4%) Query: 34 GAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIIL 93 G T Y+ + +G + A ++ ++GD + + L+++ +A++ Sbjct: 61 GVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENLISQGFNALLF 120 Query: 94 SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADY 153 S ++ V A+ AG+PV+ N + YV ++ G G A++ Sbjct: 121 SPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAA-NYVG------NVQKGN--GVNVANW 171 Query: 154 FIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGE 212 FIAN+ D K+AVI QR GF E + + + + ++A + Sbjct: 172 FIANRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSREEAFNAAS 231 Query: 213 KLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 ++ PDL + G LG V+AV+ +A ++AVFG+D ++ + L Sbjct: 232 TILQQYPDLIGFYANNDGMALGVVEAVKAAGKAEQVAVFGTDGISDAYAAVRAGD-LTGT 290 Query: 273 VDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 VD G L+++ Q D +V+ P L TK Sbjct: 291 VDSFPVLTGEIAMEVALRLMAGQ-DLPRVVATPQALITKDN 330 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 133/279 (47%), Gaps = 13/279 (4%) Query: 38 LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVS 97 + + ++D A+ V+ L+ NAQ SK+ + V L+A+ D ++++ ++ Sbjct: 90 KEANPFRIAETASLKDEARKRGVK--LLAVNAQSQFSKQISDVQDLIAKGADLLVIAPLN 147 Query: 98 ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN 157 +G +R AS IP++ + IN YVS ++ D +E G++ AAD I Sbjct: 148 SDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYVS-FIGSDFVEQGRR----AADKMIEA 202 Query: 158 KIDQPKIAV-INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLI 215 + ++A+ + V +R KGF++ + + PG ++V Q G +K SV E+LI Sbjct: 203 TGGKGEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKGQSVTEQLI 262 Query: 216 ISTPDLNAIMGESGGATLGAVKAVRNQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVD 274 S P + I E+ LGAV A+++ + G + + D T +++ + + V++ Sbjct: 263 QSKPGIKGIYAENDEMGLGAVNALKSAGKKPGAVKIVTVDGTRNAVKQIVDGWI-SGVIE 321 Query: 275 ISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + + G F QTL K + ++ I + Y KT Sbjct: 322 SNPR-FGPLAF-QTLDTFTKGEEVQQDIVIKDSAYDKTN 358 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 120/272 (44%), Gaps = 17/272 (6%) Query: 32 TIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 TIG L+ T +Y ++ +++ AK+ + + +A GD +K+ V + + VDA Sbjct: 60 TIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQ--DAAGDANKQLGQVQDFITKKVDA 117 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 I+++ + GS + A +AGIPV + + K V ++ D + G+ Sbjct: 118 IVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKPV-----THVATDNKKGGQLAAEYV 172 Query: 151 ADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAIS 209 + + K + +AVI E CV R GF + LK P ++V Q KA Sbjct: 173 VNNILTEK--KGNVAVITYSEIESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAAD 230 Query: 210 VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVL 269 V + +++ +++ + A +GA+ ++ N A KI G D E E++ Sbjct: 231 VMQNMLLKNDNIDVVFCVGDPAAIGALSSITAANAATKI--IGYDGNPEGVAEIKKGGNW 288 Query: 270 KAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 A V +G TL+ I K +GEKV Sbjct: 289 VADVAQDPAGIGK----TTLEAIKKHLEGEKV 316 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 69/302 (22%), Positives = 127/302 (42%), Gaps = 14/302 (4%) Query: 21 ALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 + + K +I + ++ ++ G++D AK++ V++ +++ + + + Sbjct: 44 SGASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLAN 103 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V + VD I++S + A EAGIPV+ + + +++ D Sbjct: 104 VQDAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDIGTDSGE----YVSFISTDN 159 Query: 140 LEFGKKLGNAAADYFIANKIDQ-PKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVAN 198 KKLG AD NK D+ +IA+ +A + V R++GFEE +K ++ Sbjct: 160 SGGAKKLGEYVADKL--NKGDEIAQIAL--NQARKNGVLRKEGFEEGIKEKLKEVD-FRQ 214 Query: 199 QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 E D+ + + LI S P+L I S ++GAV A++ N K + G D + E Sbjct: 215 MEKVNRDEGVRYTQDLITSYPNLKCIFCHSEDPSMGAVTALKEIN-NDKCKIVGFDCSPE 273 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQW 318 + + +++ +L A MG LK EK I V L T+ + Sbjct: 274 VVEAIKSGDIL-ATAAQQPVFMGRTAVD-CLKTHLDGGTPEKEISVDTLLVTQDNINDVY 331 Query: 319 LA 320 Sbjct: 332 DK 333 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 117/293 (39%), Gaps = 13/293 (4%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 +A+ ++ I I Q ++ V+ G + AA + +V++ + + K+ + Sbjct: 39 TKASGDKIYIPIISKGFQHQFWQAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQA 98 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + + AI +A+ S +++A AGIPVI +++ ++ S V Sbjct: 99 ALDKKPSAIGFAALDSQASVPLLQKAKAAGIPVIAFDSGVDSDIPITTASTNNVAAAALA 158 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFEEVLKSRVPGAQIVANQEG 201 K+ + +I VI + V RR GF +K + P +IV Q G Sbjct: 159 ADKMAELI--------GGEGEIGVIVHDQTSVTGVDRRDGFVNRIKEKYPNIKIVDIQYG 210 Query: 202 TVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 K+ + + +I + P++ G + G+ +G + AV + G+I V G D Sbjct: 211 GGDHLKSTDLAKAMIQAHPNIKGFFGSNEGSAVGVINAVTELKKEGQITVIGFDSGKAQI 270 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 +++ V+ + + +G ++ I + E I Y K+ Sbjct: 271 DAIKSG-VMAGAITQNPVGIGYETVKAAVEAIRGE-KVESTIDTGFYYYDKSN 321 >UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4T0_9CLOT Length = 334 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 141/338 (41%), Gaps = 32/338 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE-------------------MTIGAIYLD-T 40 M +K+ +++L+ + ++ A A++ +G I D T Sbjct: 1 MKSKVFKRLSVVLVMVIALVSVSACTAKEPGSSDSKKEETTKKDKKSGKTKVGFIVQDLT 60 Query: 41 QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 Y+ V +GV+D ++VQ+I + D + V+ L+ + VD I++ V Sbjct: 61 INYFLSVVKGVEDFQDKYDMEVQVI--DGHSDAPTQVDAVENLITQEVDCIVICPVDTVA 118 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN--K 158 V+ A AGIPVI ++ I A++ + ++G + G A + + N K Sbjct: 119 PEAAVKEAQAAGIPVITWSEKIEGAD------AWIAVNNYDYGFENGKIAGQWILDNLDK 172 Query: 159 IDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIIST 218 + K+ + + E ++R +G + L S P A+ VA Q G + + E + Sbjct: 173 QEDAKVMYVYVKENEQLIERGEGMMDGLASLAPDAETVAVQSGNTTESGMEAVETTLAKH 232 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISG 277 PDLN I+ + LGA +A+ + ++ K+ + G D + + + + +LK VDI Sbjct: 233 PDLNVIVCSNDSVALGAYEAMVSAGKSDAKVCITGQDADEKNLEYISQDTILKGTVDIGA 292 Query: 278 KKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 G + KV+ + + I V T Sbjct: 293 YNQGELLCQSVEKVLKEGKVADP-IYVSFTPVTMDNVK 329 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 115/298 (38%), Gaps = 15/298 (5%) Query: 29 KEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 + TIG + Y+ V VQ A ++ ++ + + ++ T ++ V++ Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY--VSAYLVGDPLEFGKK 145 VD IIL + G ++ A IPVI +T ++ + + D G+ Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 146 LGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV- 203 +G A + D K A++ + R GF L +VA Q Sbjct: 199 VGEEVAQMY----PDGCKTAILRGVQGQTNDDDRYNGF---LDKAGDVVDLVAEQHANWE 251 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 D+ + + +I + DL I E+ +GA +AV +I +F D TE Q + Sbjct: 252 TDQGYTAIQNIIQANKDLQVIYCENDLMGIGAYQAVDEAGLTDQIKIFSYDGVTEGLQYV 311 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLAT 321 + + + KMG A K+ + D E I +L T +E+ KQ L Sbjct: 312 VDGK-FVSTCAQQPIKMGKLGVANMAKIFAGK-DAESYIDTGCELIT-SENAKQTLEE 366 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 137/314 (43%), Gaps = 21/314 (6%) Query: 8 TRNLLLMATLLGSALFARAAEKEMT-------IGAIYLDTQ-GYYAGVRQGVQDAAKDSS 59 + ++ + + +F + + GA Y+ ++ + ++ A + + Sbjct: 11 VKMMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANG 70 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 LI + D+ K++ + L+ + VDAI ++ + ++ A +A IPVI + Sbjct: 71 D--VLITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVD 128 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR 179 I + + V+ + + + G +K D KI ++ + V+R Sbjct: 129 APIYDESL---VNCSIASNNYDAGVLCAKDMM-----SKRDHAKIILLEHATAKSAVERI 180 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 +GF + + S I ++ A+ ++++ TPD++ +M + + LGA+ A+ Sbjct: 181 QGFLDTIASNANYQVINRADCDGQIEIAMPTMKQMLKETPDVDVVMALNDRSALGALAAI 240 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + + + V+G D + ++ + + N +++A S KMG + + K + + E Sbjct: 241 ESM-EIDNVLVYGVDGSPDVKELI-NTGLIQATAAQSPVKMGQLAYQKA-KALLENKKIE 297 Query: 300 KVIQVPIDLYTKTE 313 K I+VP++L ++ Sbjct: 298 KKIEVPVELISRDN 311 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 122/300 (40%), Gaps = 19/300 (6%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 A AA + IG ++ G++ GV+ AK+ L++TNA GD ++ Sbjct: 61 ANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFD--LVQTNANGDAQQQVNDAIN 118 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L+++ V A++L+ + V +A+ IPV + + V++++ D + Sbjct: 119 LLSQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK----VTSFVASDNVAL 174 Query: 143 GKKLGNAAADYFIANKID-QPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 G+ AD + + +I R KGF + + ++ P ++VA QE Sbjct: 175 GQTAAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEI-AKYPDIKVVARQE 233 Query: 201 GT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ------AGKIAVFGS 253 G +K+++ ++ P ++A+ G + T+GA KA+ N + I V G+ Sbjct: 234 GAFDQEKSLNAMTNILQKYPQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGA 293 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 D T + + + A + + +M K+ D P L K+ Sbjct: 294 DGTAQALSAIRAGK-QDATISQNPIQMAAKSLQFVADYTAKK-DVPANYAWPTLLIDKSN 351 >UniRef50_A3DI69 ABC-type sugar transport system periplasmic component-like protein n=4 Tax=Clostridium RepID=A3DI69_CLOTH Length = 372 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 129/322 (40%), Gaps = 17/322 (5%) Query: 3 TKMRTTRNLLLMATLLGSALFARAAEKE---MTIGAIYLDTQGYYAGVRQGVQDAAKDS- 58 T TT N + T L F + + I Y + +Y ++ G+ A K+ Sbjct: 49 TNSGTTSNNVTGKTDLADTNFDTSYTPKRTSYKIYCTYKNIHAWYDAIKCGIDAAVKELA 108 Query: 59 --SVQVQL-IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 V V AQ D + ++T + + D I + + + A GIPV Sbjct: 109 EKGVTVDYEWYGPAQPDAVDQVNSIETAIGQGWDLIAVDVNQPELTGEAINNAVAKGIPV 168 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEV 174 + T V A+ VG+ +G G A A + +IA++ Sbjct: 169 AVFGT----SDVPNCDRAFFVGNTDPYGD--GCALAKAVCEKMGGKGQIAILAGTIGALA 222 Query: 175 CVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGGATL 233 +R +GF++ + ++ P +IV Q + ++KAIS+ E + + P+L I+ + + Sbjct: 223 HEERLRGFKDTI-AKYPDIEIVDEQRDNDEVEKAISITESWLQAYPNLGGILCNNMSNPV 281 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 GA +AV + ++GKI + G D L++ + A V + MG + +K I+ Sbjct: 282 GACQAVADAGKSGKIVIGGMDHDLRALNALKDGTLYVAQV-QNCYDMGYKLIYNAIKTID 340 Query: 294 KQADGEKVIQVPIDLYTKTEDG 315 + E +Y + D Sbjct: 341 GEKVEESTAVGSTSVYAQDADK 362 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 131/292 (44%), Gaps = 10/292 (3%) Query: 32 TIGA-IYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 IG I + ++ ++ ++AA+D +++++ E +A+ D + ++T+V DA Sbjct: 91 KIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDA 150 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 IILS + + A+EA IPVI ++ + + +L G ++ G+ Sbjct: 151 IILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALAD-AGGHLDGKITVNFEEQGSTV 209 Query: 151 ADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAI 208 A+ I+ D K+A++ E V R G + V + G ++VA Q +KA Sbjct: 210 ANDMISRMEDGGKVAILAGLEGAGQSVGRTNGAKTVFE-NTEGVELVAAQACDWDTEKAY 268 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 + ++ + PDL I + L AV+A++ + V+G D TT+ +E+ + Sbjct: 269 EATKDILTAHPDLKGIFACNDNMALAAVQALQEMGNKD-VMVYGVDYTTDAKAAIEDGTM 327 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE--DGKQW 318 + ++ S + + +I + + + +P+ L T+ D + W Sbjct: 328 MGSMTYSSA--IYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQDNVADFEGW 377 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 121/314 (38%), Gaps = 16/314 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS-VQV 62 M +L A L G A + AA ++G D ++ + +G +DAAK V Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 ++ +++ D++ + ++ +A VD I+++A G +++A AGI + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI------AVV 114 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 A ++ D G + A + + ++N R G Sbjct: 115 AVDVGAVGADATVMSDNAMAGAESCKFMAQQL----GGRGNVVIVNGPPVTAVSARVAGC 170 Query: 183 EEVLKSRVPGAQIVANQEG--TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 ++VL PG +++++ + D + L+ + ++A+ + +GA AV+ Sbjct: 171 KKVL-GNYPGIKLLSDNQDAHGSRDGGMETMANLLTAHKKIDAVFAINDPTGIGAELAVK 229 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAV-VDISGKKMGNAVFAQTLKVINKQADGE 299 ++ + D + + L++ + L AV + M ++N + + Sbjct: 230 QAGRSDVKLIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKRPAK 289 Query: 300 KVIQVPIDLYTKTE 313 + +P TK Sbjct: 290 SQVLLPTPAVTKAN 303 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 25/321 (7%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKE--------MTIGAIYLDTQGYYAGVRQGVQDAA 55 K R LL+ A ++ + L +KE +TIG + + A Sbjct: 2 KKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAEDA 61 Query: 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 V LI +A+GD++K+ +TL+A+ VDA+I+ GS+ V A+EA IP+ Sbjct: 62 AKEQ-GVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEV 174 I N I DK +A++ E G+ LG +F N +I +I Sbjct: 121 IICNGDI----ADKNYTAFVGCTDQESGEILGT----WFNDNVEHGSQICIIEGPMGQSG 172 Query: 175 CVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD-LNAIMGESGGAT 232 V R GFEEV + ++++ Q D+A+++ E + + D L AI+ E+ Sbjct: 173 QVGRYAGFEEV--GMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGDKLKAIVCENDDMA 230 Query: 233 LGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI 292 +GA+ A + + + + G D + Q +++ + L V G L++I Sbjct: 231 MGALSACKAAGRTD-VVIGGVDGLEDAIQAVKDGE-LGVSVLQDSAGQGEGAVEVALQII 288 Query: 293 NKQADGEKVIQVPIDLYTKTE 313 N + D +K ++P T Sbjct: 289 NGE-DYQKDTRIPFHAITSDN 308 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 118/294 (40%), Gaps = 16/294 (5%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQ-VQLIETNAQGDISKESTFVDT 82 + K ++G D + ++ + QG + AK + V++ ++ D++++ ++ Sbjct: 54 GSPHKLRSVGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIEN 113 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 VA N D II++A G V +A +AG VI +T I + A + + ++ Sbjct: 114 FVAANTDLIIINAADSKGIRPAVDQARQAGKVVIAVDTAIEAD-----IDATVTTNNVQA 168 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG- 201 G + Y + + ++N +QR G +VL ++ P ++++ + Sbjct: 169 G----EISCQYIADRLKGKGNVVIVNGPPVTSVIQRVDGCLKVL-AKYPDIKLLSKDQNA 223 Query: 202 -TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 D + V L+++ P ++A+ + + +G A + + G D E Sbjct: 224 EGSRDGGLRVMSDLLVTFPKIDAVFAINDPSGVGVDLAANQAKRQD-FFIVGVDGAPEAI 282 Query: 261 QELENNQ-VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + + + + A + + M +++ + I +P L TK Sbjct: 283 EAIASGDSLYAATATQNPRGMTQTAIQVGNDILHGKKPESPNILIPAKLITKEN 336 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 120/307 (39%), Gaps = 14/307 (4%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 + + L S + + I T +Y + G + AA+ ++ + Sbjct: 27 AVFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPE- 85 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 + + ++ ++ +V N DAI+++ ++ A IPV+ +T I ++ + Sbjct: 86 EFSPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEI-- 143 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKS 188 A + D +E G+ G A A+ + K+ +I+ QR++GFEE +K Sbjct: 144 -ALARISSDNVEGGRMAGEALAEQI----GGKGKVLLISVKPGISTTDQRKQGFEEAIK- 197 Query: 189 RVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 + P + + + +A S+ + + PDL I G + + GA VR + + Sbjct: 198 QYPDIEYLGTEYCNDDPTQAASITTSTLQAHPDLAGIFGANVFSGQGAGTGVRQAGKRDQ 257 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-KVIQVPI 306 ++V D + ++L L ++ +G ++ + + E K I Sbjct: 258 VSVVAFDASPTQVEDLRRGN-LDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGF 316 Query: 307 DLYTKTE 313 T+ Sbjct: 317 TTVTRDN 323 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 141/336 (41%), Gaps = 31/336 (9%) Query: 5 MRTTRNLLLMATLLGSALFARAAEK----------------EMTIGAIYLDTQGYYAGVR 48 M+ + +L+ ++L S L A + IG + + ++ Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLDEFLTYMQ 60 Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 +++ A + + I ++AQ D +++ V+ ++RNVDAII++ V + V Sbjct: 61 DAMKEEAANY-PDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMV 119 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN 168 ++AGIP+I N + +A++ + ++ G A ++ IA+++ Sbjct: 120 NDAGIPIIIANRTFDGVDQ---ATAFVGSESIQSGLLQMEEVAKLL----NNEGNIAIMD 172 Query: 169 CE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMG 226 E E + R +G +++++ G ++V + + + E + S +++A++ Sbjct: 173 GELGHEAQIMRTEGNKQIIEEH-DGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVA 231 Query: 227 ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA 286 + LGA+ A+ + + V G D T + ++ + L V K G Sbjct: 232 NNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGK-LDVTVFQDAKGQGATSVK 290 Query: 287 QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH 322 ++ N + + +P +L T E+ +++ A + Sbjct: 291 VAVQAANGEDVED--AMIPYELVT-PENVEEYEAKY 323 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 116/296 (39%), Gaps = 11/296 (3%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 K +T L ATLL A + A + ++ +G AK+ Sbjct: 2 KKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDTL 61 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + GD++K++ ++T +AR A+IL + S ++ R +AGIP Y+ IN Sbjct: 62 VASHD--GDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN 119 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 + G+ +V + + + G A+ + ++ E+ R +GF Sbjct: 120 KTGI---AVTQIVSNNFQGAQLAGEKFAELMGD---GGEYVELLGPESDTNAQVRSEGFH 173 Query: 184 EVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 ++L P ++VA Q +A S E ++ + P++ ++ + LGA A++ Sbjct: 174 DIL-DNFPEFKMVARQSANWSQTEAFSRMESILQANPNIKGVITGNDSMALGAEAALQAA 232 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + + G D + + +KA + V Q I + G Sbjct: 233 GRKD-VFIVGFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTG 287 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 124/318 (38%), Gaps = 17/318 (5%) Query: 1 MPTKMRTTRNLLLMATLLG--SALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKD 57 M + + +L + L+ + +A IG + + ++ + A Sbjct: 41 MNKPKKAVQGVLFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAK 100 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 ++LI +A+ D K+ + + + VD IIL V+ + + +AGI ++ Sbjct: 101 QD-NLELIFVDAKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVY 159 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCV 176 N + AY+ + L FG++ AA + D I +I E + Sbjct: 160 LNR---RPTYLPDGVAYVGSEELRFGEEQAKYAASH-----SDGGNIGIIMGMMTVEAAI 211 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 R +G E+ K + P I+ Q + + V E I S L+ I+ + LGA Sbjct: 212 LRTQGVEDFFKEK-PEYNIIRKQTALWQRSQGMVVMENWINSGDKLDIIISNNDDMALGA 270 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 ++A+R + V G D T + ++N L A V G+ L INK Sbjct: 271 IQALRAAGKLDDTIVIGVDATPDGLMAIKNG-ALDATVFQDGRSQARGAIDAALSGINKT 329 Query: 296 ADGEKVIQVPIDLYTKTE 313 +K+ +P +L TK Sbjct: 330 PR-DKITWIPAELVTKDN 346 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 118/299 (39%), Gaps = 16/299 (5%) Query: 12 LLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 L + + + A + IG I +T Y GV+ A K Sbjct: 61 LPVTGIGAQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTA 120 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 + ++ ++ ++ ++VDAII+ NG VR+A +AG+ V+ T + + Sbjct: 121 DSVEEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRT 180 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSR 189 D E G + A AD + K ++ ++R G L S Sbjct: 181 -----GVDYYESGYTMAKAVAD----KLGGKGKFIILEGPAGASNAIERLNGINTGL-SE 230 Query: 190 VPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKI 248 G +IVA+Q + +SV E LI D++A++ + + LGAV+A+ N + + Sbjct: 231 YEGIEIVASQTANFKRTEGMSVTENLIQQYTDIDAVIACNDESALGAVQALTAANMSD-V 289 Query: 249 AVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-KVIQVPI 306 V G D + + ++ + A + G A +K +N + + E K I P Sbjct: 290 LVCGFDGSVDATNAVKEGTMF-ATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPT 347 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 37/336 (11%) Query: 2 PTKMRTTRNLLLMATLLGSALFA------------------RAAEKEMTIGAIYLDTQGY 43 TK+R T ++ ATLL + L A A+ K +T + Sbjct: 3 STKLRKTLAVVASATLLCAGLAACNRDSGGNNATGDHTTTGSASAKTITFALS-TQANPF 61 Query: 44 YAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR 103 + +R+ Q A + + + +A D + +S + A +I++ + + Sbjct: 62 FVQMRESAQKKADELGLAINFQ--DAADDSATQSNQLANAAASGTGVVIINPTDSDAMAP 119 Query: 104 TVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK 163 V++ + IPV+ + +N V++Y+ D GK+ +D + + Sbjct: 120 AVQQLVDEKIPVVAVDRAVNNAN----VASYIASDNETGGKQAAKVLSDAI----NGEGE 171 Query: 164 IAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDL 221 I V+ + +R KGF+E LK P ++VA Q K + V L+ + P++ Sbjct: 172 ILVLQGKTGSSASRERGKGFDEGLKDN-PNIKVVAKQTAEFERAKGLDVTTNLLQAHPNV 230 Query: 222 NAIMGESGGATLGAVKAVRNQNQAGK-IAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 AI E+ LGA++A+ + +AGK + V G D + + +++ ++ A + KM Sbjct: 231 KAIFAENDEMALGAIEALGS--KAGKDVKVIGFDGAEDALKAIKDGRMY-ASIAQQPVKM 287 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + K++ + +K+ QV + TK K Sbjct: 288 AEQAVIEASKLLKGETATKKM-QVEVVAATKENVDK 322 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 134/322 (41%), Gaps = 23/322 (7%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAE----KEMTIGAIYLDTQGYYAGVRQGVQDAAKD 57 TK+ +T +L LL ++ A +E + + Y+ V G + A K+ Sbjct: 5 KTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAGKE 64 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 V V ++ NA+ ++ ++ ++ + ++ A+++S + + A+ +PV+ Sbjct: 65 LGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VPVLL 121 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCV 176 +T K ++++ + E G + G + K+A+I+ Sbjct: 122 IDTDAKLKNK----TSFIGTENYEAGYEGGKLLSSLLQK----GDKVAIISGALGNTATD 173 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 +R KG + L+ G IVA Q KA+SV E ++ D+ + + LG Sbjct: 174 ERVKGAKAALEEA--GMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGV 231 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 ++AV + + V G+D T E + + + + L + + KMG L IN + Sbjct: 232 LRAVEAKGL--DVKVIGTDGTLEAVESILDGK-LAGTIAQNPYKMGYEGVKNALAAINGE 288 Query: 296 ADGEKVIQVPIDLYTKTEDGKQ 317 +K I +++ TK ++ Sbjct: 289 -KVDKRINSGVEVITKDNAQEK 309 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 125/293 (42%), Gaps = 13/293 (4%) Query: 16 TLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDIS 74 + G+ + K I + +Q ++ V QG DAA V + + Sbjct: 21 SACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDAAAKYGATVTFNGPDNDSQVD 80 Query: 75 KESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAY 134 K++ V + ++ DA+ ++ + E + V+ A A IP+ ++T + D S Sbjct: 81 KQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIPLFAFDTAF-ETNADAITSTV 139 Query: 135 LVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGA 193 + +++G AA+ IA + K AVI + + +RR GF + +K P Sbjct: 140 KTSN-----REVGKVAAENLIALLNGKGKYAVIAHSQTDATSTERRDGFLDYMKKNAPDM 194 Query: 194 QIVANQEGTVLD--KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG-KIAV 250 ++V + + D KA + ++ + PDL+AI + +GA V + ++G K+ + Sbjct: 195 EMVGEVQYSNADQAKAQDIASAILQANPDLDAIFATNEATVVGAATPVESALKSGHKVLL 254 Query: 251 FGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 G D Q + + V+ V + ++G +K +N + +KVI Sbjct: 255 VGVDSGKAQQQYIRDG-VISGSVSQNPYQIGYKTIENAVKSLNGE-KIDKVID 305 >UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridium phytofermentans ISDg RepID=A9KIC5_CLOPH Length = 325 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 134/308 (43%), Gaps = 17/308 (5%) Query: 12 LLMATLLGSALFARAAEKE-----MTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIE 66 +L+ L ++ R EK + I + D+ +++ + +G Q AAK+ ++++ + Sbjct: 13 MLLTLSLAFFIYIRTLEKPKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMA 72 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 + D ++ ++ + R D I+L+A + + +AGI +I ++ + Q Sbjct: 73 PEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDI 132 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEV 185 D V+ D ++ G ++G + KI VI+ + + + R +G + Sbjct: 133 ADITVA----TDNIQAGIRIGAVTKNLVRK----SGKIGVISFVKNSKTAMDREEGLKIG 184 Query: 186 LKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 L + + + DKA +L+ PD++ ++G + + GA +A+++ + Sbjct: 185 LSDDSNKIEAIYYCDSN-YDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLE 243 Query: 246 GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVP 305 K+ + D + E Q LE + +A+V +G + LK++ K+ K + Sbjct: 244 AKVKLVCIDSSMEQIQYLEEG-IFEAMVVQKPFNIGYLGVEKALKLLKKEY-VPKQLDSG 301 Query: 306 IDLYTKTE 313 L TK Sbjct: 302 CALITKDN 309 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 120/284 (42%), Gaps = 15/284 (5%) Query: 32 TIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAI 91 I A + D + ++ + AK + + V+ + +A+GD + + ++ ++ AI Sbjct: 71 VIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFL--DAKGDSNLQIDQLNEAISNKAAAI 128 Query: 92 ILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAA 151 +L A+ TV +A EAGIPV+ N +N V + D E G+ G A Sbjct: 129 VLLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL-----SDDREAGRMQGEFMA 183 Query: 152 DYFIANKIDQPKIAVINCEAF-EVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD-KAIS 209 + N K+ + E+ V V+R +GF+E + P +++A+ +G+ + + Sbjct: 184 SHLPPN----AKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMK 239 Query: 210 VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVL 269 + P++N ++ + LGA++A++ N+ V G D T +E + L Sbjct: 240 AMTLWLSFFPEINGVVAANDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAGE-L 298 Query: 270 KAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 V + ++ +A E + +P T+ Sbjct: 299 SQTVKQDAEGQAAGAVTLVQGFLSGKAPTES-LDIPFTSITREN 341 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 63/313 (20%), Positives = 127/313 (40%), Gaps = 8/313 (2%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 M + L + + L A + G + ++ + QGV+ A+++ V Sbjct: 1 MSRLKTTLKLGAAFATLLAVTPAMADGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYY 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + + +T++ RN A+I +A++ ++ A +AGI V+ + ++ Sbjct: 61 MQAVESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLD 120 Query: 124 QKGVDKY---VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 Q +D ++ + D + G + A+ P + + +R Sbjct: 121 QAILDAEGIEITFRIGSDNVLAGAQGAEYVVSQLGADATG-PVLVIEGLSGNITGQKRAS 179 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF + L PG +IVA+ G KA ++ ++ P L AI + G LGAV++V Sbjct: 180 GFADKLAELAPGLEIVASLPGDWDRGKAANITNDILTRNPGLVAIFAANDGMALGAVESV 239 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + G++ + G D ++ + + + L A V +G +K+ + + Sbjct: 240 FAAGKGGEVIIVGVDGNSDAVKSINEGR-LTASVAQLPYLVGKQAVEN-VKIAVEGGEVA 297 Query: 300 KVIQVPIDLYTKT 312 K I VP + TK Sbjct: 298 KEIIVPTLVLTKD 310 >UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD9_9CLOT Length = 369 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 10/293 (3%) Query: 28 EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISK---ESTFVDTLV 84 ++ + +G I + Y G + +D + ++L+ + S + +++++ Sbjct: 76 DRTLKVGLIPVTMNTAYTMTINGAKKQIEDKGLDIELLVQAPASNTSTITEQGNIMESMI 135 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 + VDAI L+ S+N +R A+EA IPV +N K YVS+ + D G Sbjct: 136 QQGVDAIALATESDNSMLPYLRAAAEADIPVFLFNMTELDKDNIYYVSS-IGYDQYNAGL 194 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV- 203 ++G A+++ ++ K+A++ A V R GF+ ++ + QIVA+Q Sbjct: 195 EIGKYVAEHYGDKEV---KLAILEGYAGIVNTMRIDGFKAGIQGK-DNIQIVASQTADWT 250 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 +K SV E ++ S PD+N I G+ LG + +++ + +I G T + + Sbjct: 251 REKGQSVTESILTSNPDINLIFGDYDEMVLGGLVSIKERGLLDQIDTIGYGCTKDGVAAI 310 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 ENN+ + A +D+ G + + EKVI P +Y K G+ Sbjct: 311 ENNE-MTATIDVGEYGTGIDIIDAVNDFCIEGKSVEKVINRPSKVYDKNNIGE 362 >UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Rhizobiales RepID=B5ZNU3_RHILW Length = 329 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 133/312 (42%), Gaps = 11/312 (3%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGY-YAGVRQGVQDAAKDSSVQVQL 64 R L A ++ +A+ + ++TI I DT + + V G + A KD V V Sbjct: 10 RRAFTALAGAAVIATAMPVTSFAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPE 69 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + A+ DI+ + + ++ VA A+++S + + A+++ +P+I ++ + Sbjct: 70 LGAQAESDINGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAKS-VPIIGIDSGADS 128 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI-DQPKIAVI-NCEAFEVCVQRRKGF 182 K ++L D ++ G+ + A ++ +I ++ N QRR+GF Sbjct: 129 KA----FKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGEIVILTNLPGVGSLEQRREGF 184 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + +K++ PG +++A++ G +++ LI + P L + + G +A+ Sbjct: 185 LDQIKTKHPGLKVIADKYGDGQATTGLNMMTDLITANPKLVGVFASNLILAQGVGQAIAE 244 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 KI V G D + L++ + +V +MG L ++K E Sbjct: 245 NKLGDKIKVIGFDSDDKTVGFLKDGAI-AGLVVQDPYRMGYDGIKTAL-AVSKGEKVEAN 302 Query: 302 IQVPIDLYTKTE 313 + +L TK Sbjct: 303 VDTGANLVTKAN 314 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 123/294 (41%), Gaps = 13/294 (4%) Query: 26 AAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 A + IG + Q +Y +++G + AAK ++ + +A GD++K++ + L+ Sbjct: 29 AHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFL--DANGDVNKQNNDIQDLL 86 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 R VD +I++ V+ + + A + G+PVI + IN G V+A+L D ++ GK Sbjct: 87 TRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGG----VTAHLGRDNVKMGK 142 Query: 145 KLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-T 202 +G+A + K+ I + V RR GF + LK G +IVA Sbjct: 143 AVGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKG--SGFKIVAGPYAEY 200 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 A++ + L+ + PD+ + + +GA+K + + + V G D +E Sbjct: 201 TRANAVTAMQDLLQAHPDVKVVYAHNDDMAMGALKVLAEAGKKD-VFVAGVDGLSEALAS 259 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + A + +G+ + I + TK G+ Sbjct: 260 MAGGDQYVATALNDPRYLGDMTVQTA-RAIKAGKKVPAFVDAGTKAVTKANVGE 312 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 129/316 (40%), Gaps = 17/316 (5%) Query: 5 MRTTRNLLLMATL---LGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQ 61 M+ L L + S A AA+K + A DT + + +A+K S Sbjct: 1 MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASK-SDPA 59 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V++ ++A D+SK+ +D +A+ V+AI++ V G V +A++AGIPVI Sbjct: 60 VEVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGI- 118 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 Q KY ++ ++ G+ G Y + KI + +R+K Sbjct: 119 --QSAGGKY--TFVGSKNIDAGRLQGE----YMKEHLPKGAKILYLEGTPGLSHTQERKK 170 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 GFE+ L R + + + + V E I S P +AI+ + LGA++A++ Sbjct: 171 GFEDAL-GRSDVTTLASLSANYDRAEGMKVTEDWIQSFPKFDAIVAANDQMALGALEALQ 229 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 ++ + + G D T + ++ + + A F ++ + K D Sbjct: 230 GADRLKGVMISGVDGTADALNAIKAGT-MSQTIFQDAAGQAKAAFE-VVEGLKKGEDAPA 287 Query: 301 VIQVPIDLYTKTEDGK 316 VP TK G+ Sbjct: 288 EKLVPFASITKDNVGQ 303 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 133/298 (44%), Gaps = 14/298 (4%) Query: 25 RAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A+ GA + ++ + +G++ + + ++ ++ +AQ + K+ + L Sbjct: 34 STADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGDRLVIL--DAQFNSLKQKNDLSDL 91 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + +NV I ++ V+ G ++ A+ +P+I + + K ++ + + D + G Sbjct: 92 ILQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPVK-KADEELIVCTVASDNVRAG 150 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-T 202 + A A + ++ V++ + C+ R GF+ L+ + P +I+ QE Sbjct: 151 ELAAQALA-----KVNPKARLVVLHLSVNKACIDRVAGFKTELE-KHPEMKILDVQEAQG 204 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 + A V LI PDL+A+ + LG + A+ + N+ ++ + D + + Sbjct: 205 TTEGARPVMRDLIGRYPDLDAVFAINDPNALGVISALDSANKLDQVTIVTVDGSQAGIKA 264 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 ++ + L + +++G + L + + EK ++V ++L T E+ +Q+L Sbjct: 265 IQAGK-LHSTSAQFPREIGKIAAEKMLAHLKGE-PVEKDVKVRVELIT-AENAEQYLE 319 >UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J484_9BACL Length = 329 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 125/306 (40%), Gaps = 17/306 (5%) Query: 14 MATLLGSALFARAAEKEMTIG----AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 + TLL S + I + +D Y+ + G + AAK+ +V++ + Sbjct: 20 LITLLSSCGGPGSGADHQQIYDVDMIVKMDRGDYWKTTKLGAEVAAKEFNVRLNFVAPEN 79 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 + D+ + ++ + R DAIIL+A + R S IPVI ++ + Sbjct: 80 ENDVEGQIRLMEEAIERRPDAIILAASDYEALGQVTDRTSYYDIPVISMDSEV----AST 135 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKS 188 V ++ + E G+K AA+ + +I +IN + QR +GF + + + Sbjct: 136 KVKTFVGTNNYEAGQK----AAERLVDLTGPVSEIGIINFVKGARNANQREEGFLDYV-A 190 Query: 189 RVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 R P +V Q + A + ++ P+LN I+ S +++GA +AV GK Sbjct: 191 RFPDVHVVDIQYCGSDEYLAYKLTADMLKRFPNLNGIVSLSAESSIGAGRAVDELGYGGK 250 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPID 307 + + D E+ + L+ +V +A+V + G A ++ + E I Sbjct: 251 VKMIAFDNPPEMLELLQEEKV-QAMVVQNPFNNGYMAVAAAVQAARGE-KLEDRIPTDTK 308 Query: 308 LYTKTE 313 L Sbjct: 309 LIDLNN 314 >UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8 Length = 349 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 123/302 (40%), Gaps = 15/302 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS---- 59 M LL+A +L A +E TI I + ++ VR+G + A D Sbjct: 1 MARVHLYLLLAAVLPIASGCARRGEEYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDG 60 Query: 60 --VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 V+V + D ++ VD VA A++L+ + V+RA++AG+PV+ Sbjct: 61 TRVRVIFDGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVI 120 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCV 176 ++ ++ + Y+ D G+ G + D+PK+ + + Sbjct: 121 IDSGLDDP---NHFVKYVATDNYNGGRLAGRHLIRELQRRRKDKPKLILFRYAVGSQATE 177 Query: 177 QRRKGFEEVLKSRVPGAQIVANQ--EGTVLDKAISVGEKLIISTPD-LNAIMGESGGATL 233 R +GFE+ +K R PGA+ ++ G D A+ LI+ + ++ I + + Sbjct: 178 DRERGFEDEVKERCPGAEWLSTDKYAGATRDSAMREAGPLILQFGNQVDGIFAPNESSAS 237 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 G +R Q K+A+ D + + Q ++ V+ + +MG ++ + Sbjct: 238 GTADVLRAQGLNQKVALMAFDGSKPLLQSIQQGDVI-GSILQDPYRMGYLSAWYCVRHLR 296 Query: 294 KQ 295 + Sbjct: 297 GE 298 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 66/325 (20%), Positives = 127/325 (39%), Gaps = 24/325 (7%) Query: 5 MRTTRNLLLMATLLGSALFA------RAAEKE--MTIGAIYLDTQGYYAGVRQGVQDAAK 56 M +L+ +G ++ A AAEK+ IG + + A Sbjct: 1 MNKKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAA 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 + + ++I +A D SK+ ++ V VD II S + V A +AGIPVI Sbjct: 61 EKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVI 120 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVC 175 + I+ + ++ D ++ G+ G AD + D K+ I E Sbjct: 121 LLDRKIDGDK----YTQFIGADNVDMGRIAGEYIADTLL---PDGGKVCEIKGLEGTSGG 173 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLG 234 + R GF E +K +IVA +KAI+V E+++ + +++ + + G Sbjct: 174 IDRDNGFREGIKKN-DKIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFLALNDPMAEG 232 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTE---IAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 A A +N + G I G D + + + ++ V +G G ++ Sbjct: 233 AYIAAKNAGREGDILFVGFDGLPTPDGGIRSVMDGRLSMTQVYPTG---GTEAIESAYQL 289 Query: 292 INKQADGEKVIQVPIDLYTKTEDGK 316 + + + +K + + ++ T + Sbjct: 290 LVEGKELDKTLTLTSEIVTPDNAEE 314 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 119/287 (41%), Gaps = 15/287 (5%) Query: 29 KEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 K++ GA Y+ Y+ + + ++++ + LI + D K++ + ++ Sbjct: 26 KQLKFGATYMTMNNPYFVNMDENIEESVQAKGD--ILITRDPLQDQKKQNEQIKDMINEG 83 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 +D + L V N + + IPV ++ ++ V + +V D + G + Sbjct: 84 IDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEA---VVSTIVSDNYDAGVQCA 140 Query: 148 NAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDK 206 K I ++N +A +R KGF + +K P +IV +E + Sbjct: 141 KDMM-----KKKTSANIIIVNQKALNSINERVKGFRDTIKGH-PQYKIVEEKESAAEFEI 194 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 A+ V EK+I + + +MG + LG + A++ ++ ++ V+G D + + ++ Sbjct: 195 AMKVMEKIIYEKKNYDVVMGGNDPIALGCIAAMQMTDKTDQVMVYGVDGSPDGKAMIKAG 254 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 L+ S K+G + + +K + +P++L T Sbjct: 255 -FLEGTAAQSPIKIGEKAVQTAYSYLAGET-VKKHVTIPVELITADN 299 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 125/290 (43%), Gaps = 14/290 (4%) Query: 27 AEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A ++ I +Q Y+ V+ G + AAK+ ++ + D++K+ ++ V Sbjct: 27 ASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVINDFVN 86 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + +DAI+++A N ++RA EAGIPVI ++ IN + +++ + E KK Sbjct: 87 KKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINA----DFPISHIATNNKEAAKK 142 Query: 146 LGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TV 203 A+ + ++A + + R GF+E + S +VA Q + Sbjct: 143 AAEVLANII----GKKGEVACIPFVAGAATSIARENGFKEGI-SNYKNIDLVAVQYSQSD 197 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 A+ V E ++ + P+L I + +GA +A++ + + + + G D + Sbjct: 198 YATAMKVTENILTAHPNLKGIFAANEAGAVGAARALKARGKTADVILVGFDAAQTEIDAM 257 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + ++ A++ MG + + + + EK+I + + T Sbjct: 258 KEG-IIDALIVQRPYMMGYEGVKNAVAALEGE-EVEKLIDTGVVVATPDN 305 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 118/316 (37%), Gaps = 16/316 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQ 63 + L+ + G K++ +G + + + G++ AA+ ++ Sbjct: 13 VSMLSIFLISCSQKGDTADGGQGGKKIKVGVSIANFDDTFLTYMMDGMKKAAEKEG-DIE 71 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L +A+ DI+K+ V+ V + D II+ V + + A G ++ N Sbjct: 72 LEFVDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPG 131 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKGF 182 Y Y+ + KK G +Y + I ++ + E ++R +G Sbjct: 132 NLPDGAY---YVGSEE----KKAGIMQMEYLAEKMGGKGNIVILMGKLDNEGTIKRTEGV 184 Query: 183 EEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVR 240 EE + + P +I+ Q G ++ E + + +NAI+ + LGAV+A++ Sbjct: 185 EE-IAKKYPDIKILDKQTGLWQRTDGMAKTENWLNKYGNEINAIVSNNDDMALGAVQALK 243 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 + + G I V G D T + L + A V G K N + K Sbjct: 244 DSGKTG-IFVIGVDATPDGLAALAAGDI-SATVFQDADGQGGGAVEVAKKAANGETVV-K 300 Query: 301 VIQVPIDLYTKTEDGK 316 VP L T + Sbjct: 301 ETWVPFKLVTPENINE 316 >UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter), putative n=6 Tax=Streptococcus RepID=A3CKH1_STRSV Length = 328 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 126/290 (43%), Gaps = 16/290 (5%) Query: 28 EKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 EK++ IG Y+ +Y + ++ ++ + + + D K+S +D V Sbjct: 41 EKQVKIGVTYMTMNNDFYKTLNAELEKKTNQQGSRLYV--RDPELDEGKQSQQIDFFVRE 98 Query: 87 NVDAIILSAV--SENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 VD I+++ V + ++++A +AGI +I + I+Q D V +V D + G Sbjct: 99 KVDVIVINPVKSNSPSIISSLQKAKKAGIKIIVVDAPISQ---DVKVDTTIVSDNYQAGV 155 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TV 203 + I ++ + R +GF + ++ + P +I++ +E Sbjct: 156 LIAQDMMKRL-----PSANILLLEHRNAVSAMDRIQGFIDTIEKQ-PSYKIISQKETLGQ 209 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 ++ + + + D N +M + A +GA+ A++NQ KI+++G D + +I L Sbjct: 210 TEETMPQVKGALDEGLDFNVVMALNDRAAIGALAAIKNQGLDKKISIYGVDGSPDIKNFL 269 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 ++ V S +MG AQ ++++ + + +P+ L + Sbjct: 270 ATTSDIEGTVAQSPIQMGRK-VAQVIELMQEGKSYDSQYLIPVHLVNRDN 318 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 13/290 (4%) Query: 27 AEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A++E+ I + Q ++ V+ G + AAKD V+V + + K+ + +A Sbjct: 24 AQQEIYIPLVSKGFQHQFWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAALA 83 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + AI +A+ + +++A A IPV+ +++ ++ + K Sbjct: 84 KKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTTTTD--------NKA 135 Query: 146 LGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL 204 AAD ++A V++ + V RR GF +KS P +IV+ Q G Sbjct: 136 AAALAADKMAEMIGKSGEVALVVHDQTSRTGVDRRDGFVNRIKSAYPNIKIVSVQYGGGD 195 Query: 205 D-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 K+ + + ++ ++P+L I G + G+ +G V V+ ++GK+ + G D + + Sbjct: 196 QLKSTEITKSILQASPNLKGIFGANEGSAIGVVNGVKEMKRSGKVVIIGYDSGKQQKNAI 255 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + + A + + MG +K I + KV+ Y KT Sbjct: 256 MDGSMAGA-ITQNPVGMGYKTVEMAVKAIKGE-KLPKVVDTGFFWYDKTN 303 >UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2X7_9CLOT Length = 324 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 125/293 (42%), Gaps = 12/293 (4%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + +++E++IG + +A ++D K++ + +++ ++ + T V+ Sbjct: 34 KGSDEEISIGVTVMTLANTIWAETCTAIEDNCKENGWKCTVVDCSST--AQTQITQVENF 91 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + + VDAI+++ + ++ A +AGI VI ++ + V D G Sbjct: 92 IQKGVDAIVINPTDQAALETVMKEAMDAGIKVISWDIDSDAADCCLLV------DNYNVG 145 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEG 201 ++G AAD+ N + ++ +++ A ++R G + + P +++VA Sbjct: 146 YEIGKQAADWIEDNLDGKAEVCILDYPEAGAEVIKRADGINDAITELSPNSKVVAQVSHQ 205 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIA-VFGSDMTTEIA 260 D + E ++ S PD + G +GA +A++ G+ A +F +D TTE Sbjct: 206 GSTDGGMQAMENVLQSNPDCRVVCSVGDGGAMGANEALKAAGIKGEEAGIFSADGTTEFL 265 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 ++ + K + + A TL + K EK + + + ++ Sbjct: 266 SKIAAGEPCKMSILLDDPLSKAASITDTLDKLLKDEKVEKDLYTNVQVIDESN 318 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 123/303 (40%), Gaps = 15/303 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLI 65 ++ L L + L A + TI + T Y+ VR G + AAK +V Sbjct: 1 MSKLKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHY 60 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 I ++ + ++ ++ + AI+ V V + ++A IPV+ + + Sbjct: 61 IPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVN----VTDR 116 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEE 184 A++ D G + G Y + + + ++ + V R +GF + Sbjct: 117 SAGGKFLAFVGADDYSLGLETGR----YLLKEMGGKGNVVILEGVKGSLTNVDRVRGFND 172 Query: 185 VLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 LK +++A+Q + + V E L+ S P ++ ++ + +GA++A+ N Sbjct: 173 ALKE-FKDVKLLASQPANYQRLQGLQVMENLMQSHPQIDGVLAANDAMAIGAIEALDGAN 231 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 + K V G + T E +++ ++L A D +G G ++ + K+ +V+ Sbjct: 232 RKAK--VVGINGTKEAVDAIKSGKLL-ASGDYNGFLQGCIGTMVAIRALRKETIVNEVVL 288 Query: 304 VPI 306 P Sbjct: 289 KPT 291 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 136/320 (42%), Gaps = 19/320 (5%) Query: 1 MPTKMRTTRNLLLMATLLG--SALFARAAE----KEMTIGAIYLDTQG-YYAGVRQGVQD 53 + ++ + + A +G +F+ E ++ GA Y+ +Y V ++ Sbjct: 9 LTNRIVALAGITVFAFFIGIYVCVFSNYLEQHNTRKKLFGATYMTMNNEFYKIVNNQIRM 68 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 + + Q+I + D K++ + LV R VDAI L+ V + A +A I Sbjct: 69 QVEKNGD--QMITLDPALDQKKQNEQIKQLVKRKVDAIFLNPVDWKAVEPGLVAAKKAKI 126 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE 173 PVI ++ + + + V+ +V D K G A + K DQ I ++ A Sbjct: 127 PVIVIDSQVYRSDL---VAMTIVSDNY----KAGVLCAKEMMKQK-DQANIVLLTHNAAR 178 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATL 233 V R GF + +K+ + + +++A+ +K+I +++ +MG + A + Sbjct: 179 SAVDRINGFLDTIKNNKNYKILASADTQGQIERALPKVDKIIEEYQNIDVVMGLNDPAAM 238 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 GA+ A+ ++ + V+G D + E + ++ ++ S K+M + +++ Sbjct: 239 GALAALDSKGAREGVLVYGIDGSPEGKKLIKEG-MMTGTAAQSPKQMADTAVNAAYQILQ 297 Query: 294 KQADGEKVIQVPIDLYTKTE 313 + EK + + + TK Sbjct: 298 GE-KVEKKKVISVQMITKKN 316 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 122/305 (40%), Gaps = 12/305 (3%) Query: 14 MATLLGSALFARAAEKEMTIGAIYLDTQGYYAGV-RQGVQDAAKDSSVQVQLIETNAQGD 72 + +A+ A TIGA + + R G++D AK V L +A D Sbjct: 4 FIIGIAAAVLVSTAAHAETIGASMAVFDDKFGTLLRNGMEDYAKTLD-GVDLQIEDALND 62 Query: 73 ISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVS 132 ++K+ + + +A VDAII+ V + ++ + A++AGIP++ N Sbjct: 63 VAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNIDTLPEKQ 122 Query: 133 AYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLK-SRV 190 A++ + ++ G + K VI E + + R K +VL + Sbjct: 123 AFVASNEVDSGTLQTREICKLL----DGKGKAVVIMGELSNQAARMRTKDIHDVLATDQC 178 Query: 191 PGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-GKI 248 G +IV Q + + + + + +A++ + +GA++A++ ++ + Sbjct: 179 KGIEIVQEQTANWQRTQGADLMTNWLSAGIEFDAVIANNDEMAIGAIQALKAAGRSMDSV 238 Query: 249 AVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 + G D T + + + L V G LK ++K E+ I +P +L Sbjct: 239 VIGGIDATDDALAAMAAGE-LDVSVFQDAVGQGKGSIDAALK-LSKGEAVERKIYIPFEL 296 Query: 309 YTKTE 313 TK Sbjct: 297 VTKAN 301 >UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Actinomycetaceae RepID=C2KRR4_9ACTO Length = 326 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 55/324 (16%), Positives = 121/324 (37%), Gaps = 21/324 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE----------KEMTIGAIYLDTQGYYAGVRQG 50 M T + + L + + A+ + I ++ V++G Sbjct: 1 MRTSFKVLALGAIACLSLTACGSSPASSDGKSADAKSNSKKIILVSKGFQHTFWQSVKKG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 + K+ +V+ I + ++++ + + AI L+A+ + +++ Sbjct: 61 ALEKGKELGYEVEFIGPKNETAVTEQLDQLKNALNAKPAAIGLAALDSKAAEPILQQIKN 120 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NC 169 AGIPVI +++ ++ + D G K A ++ + ++ + Sbjct: 121 AGIPVIAFDSGVDS----DIPLTTVQTDNRTAGAKAAEKLAQLM----GNKGTVGIVCHG 172 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESG 229 +A R GF++ +K P +++ Q KA + ++ S D+ A+ G + Sbjct: 173 QATTTGKGRCFGFQDWMKEHAPDIKLLQEQWADERGKAADAAKAIVKSNTDVTAMYGSNE 232 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 G ++ V+ + G+I + G D +++ A + + KMG A Sbjct: 233 VTAAGVLQGVKEAGKMGQITIVGFDSGKAQIDAIKSGDEAGA-ITQAPVKMGAETVAAAD 291 Query: 290 KVINKQADGEKVIQVPIDLYTKTE 313 K I + EK+I Y K+ Sbjct: 292 KAIKGE-SLEKIIDSGFAWYDKSN 314 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 126/314 (40%), Gaps = 16/314 (5%) Query: 5 MRTTRNLLLMATLL-GSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDS--SV 60 M+ LL+ + LL + + E +G T G+ + Q +D AK Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + S + V+ L+A+ VDAI++ + + S + EAGIP++ + Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 + + + GD G G YF+ K+ I + V QR Sbjct: 121 ELTNDAA----TVVVKGDNYGAGVNAGE----YFMEQLGGNGKVVEIAGPSNSVTQQRSD 172 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF E ++ +IVA+Q G + ++ V E ++ S P+++A+ + G LG ++A+ Sbjct: 173 GFREAIEG--SDIEIVASQSGEFSTETSLQVMENILTSQPEIDAVYTQDDGMALGVLQAI 230 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 N+ + G + ++ + + ++ ++ A S + V + N + Sbjct: 231 NEANRTDIQFITGVAGSKDVYEIIMDDGLITATFLYSPLMVKEGVIIGA-DLANGEDPDS 289 Query: 300 KVIQVPIDLYTKTE 313 + VP TK Sbjct: 290 AEVVVPATPVTKDN 303 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 69/290 (23%), Positives = 116/290 (40%), Gaps = 16/290 (5%) Query: 28 EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 + E I I Y+ VR G Q A D + T D+ + V+ + R Sbjct: 60 DAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVKLVEDFIQR 119 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 V AI++S V+ +G +++A +AGIPVI + +N VS + Sbjct: 120 GVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPRSTVSTN--------DEAA 171 Query: 147 GNAAADYFIANKID-QPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TV 203 G AA+ D A+++ R KGF + L P +I+ G Sbjct: 172 GKFAAEKLKELAGDAGGTFAIVSAVPGAVQEGGREKGFSDEL-GTYPNYKIIGTYYGKGD 230 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 ++ ++ + ++ S PD+ + G++ G VR + KI V D +TE+ + Sbjct: 231 RNQTYNITQDILTSNPDITGFYTVNEGSSAGVTLGVREGDLKEKIFV-AFDPSTEVLDAI 289 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + V A V + +G +KV+N + EK I VP+ T Sbjct: 290 RDGYVDGA-VAQNPYLIGRTAVLNAIKVLNGET-VEKKIDVPVTWVTIDN 337 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 129/325 (39%), Gaps = 20/325 (6%) Query: 4 KMRTTRNLLLMATLLGSALFARAA-----EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKD 57 + T + +A L + F+ A + +TI L ++ +++ ++ AK Sbjct: 1 MRKVTYLMTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKT 60 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 V++I ++ Q K+ ++ + + VD II++ + +R A + GI V+ Sbjct: 61 LG-NVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVT 119 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ 177 + +N V A + D L ++ G A F I + + Sbjct: 120 IDRPVNGVPE---VIANVAADNLIGAQRQGEAVEKLFPQ---GATIINLQGIPGDKTAND 173 Query: 178 RRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLII--STPDLNAIMGESGGATLG 234 R KG + L + VA Q D+ +SV E L+ + P I+ + + LG Sbjct: 174 RSKGVHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPP-TVIVAGNDDSALG 232 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 A +AV + GKIA+FG D +T+ + + + VL VD K G I Sbjct: 233 AAQAVEARGLKGKIAIFGYDGSTDALKAVRDG-VLTGTVDQYPGKQGREAVKILTDYIRT 291 Query: 295 QADGE--KVIQVPIDLYTKTEDGKQ 317 A V+ P+ + +K + + Sbjct: 292 GARPATVDVLVSPVAITSKNLNDAE 316 >UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGH9_9FIRM Length = 288 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 12/288 (4%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN-VDAIIL 93 + + ++ + G+Q A+ V + +A+ DI + + + D + + Sbjct: 2 VLKTLSNPFWVDMADGIQAEAEKLGVTADIFAVDAETDIDGQLKKCEDAINSGSYDGLGV 61 Query: 94 SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADY 153 + ++ V A++ G+PV+ + I++ + K Y+VG K+G A Y Sbjct: 62 APITATNLISAVVAANQKGMPVVNIDAKIDEDAL-KEAGGYVVGFATSDNHKVGAIGAQY 120 Query: 154 FIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPG-AQIVANQEGTV-LDKAISV 210 + D K+A+I A ++ + RR G +E L++ G Q+V Q KA+ V Sbjct: 121 IMEQLPDGGKVAIIEGRAGDLSGELRRDGCKETLEADGSGKYQVVDVQPADWDRQKALDV 180 Query: 211 GEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLK 270 +I TPDLNA + LG ++A+ N GKI + G+D + E + ++ ++ Sbjct: 181 ATNIITKTPDLNAFFVANDTMALGVMQAIANTGNTGKILLVGTDASDETKEAIKAGNMVA 240 Query: 271 AVVDISGKKMGNAVFAQTLKVIN----KQADGEKVIQ-VPIDLYTKTE 313 V +G + I D E V + V +L TK Sbjct: 241 --VCQDPAAIGATCLDILVDAIKAGETGSPDYEAVSKLVDANLVTKEN 286 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 103/282 (36%), Gaps = 14/282 (4%) Query: 34 GAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIIL 93 G T Y+ + +G ++ V + ++GD + + + ++ + +++ Sbjct: 60 GVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGLLV 119 Query: 94 SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADY 153 S ++N + A+ GI V+ N + + D G A + Sbjct: 120 SPQTDNNLQPAMETAASRGIAVVNVNDAVIPSATQ--YVGNVQRDN-------GVRVAQW 170 Query: 154 FIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVG 211 FI N+ K+A I QR GF + Q+VA+ ++A Sbjct: 171 FIDNRPGGGKVAAIEGQPGVFAAGQRTDGFTTTITE-AGNFQVVASVPANWSREQAYDAA 229 Query: 212 EKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKA 271 ++ PDL + G LG V+AV+ N +++VFG+D + + L Sbjct: 230 STILQQHPDLIGFYANNDGMALGVVEAVKAANLQEQVSVFGTDGIPDAYASIRAGD-LTG 288 Query: 272 VVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 VD G L+++ Q +V+ P L T Sbjct: 289 TVDSFPVLTGEVAMEVVLRLLAGQG-IPRVVATPQALITADN 329 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 111/292 (38%), Gaps = 14/292 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + E I + + V ++ ++ ++ + +++ D + + + V+ Sbjct: 61 GTSGEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQ 120 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + AII AV S VR EAG+P+I +N D +V A G Sbjct: 121 ILNGTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFEN--CDSFVGAD--------G 170 Query: 144 KKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 G+ A + + +A++N E RR E L P Q+V G Sbjct: 171 AVAGSLLARFTGEKTGGKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGD 230 Query: 203 V-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 DKA+ + E + S D++AI+ + +G AV ++ I V G + + Sbjct: 231 WKRDKALQLVETWLQSGTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDGIN 290 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + + ++ A V + + L+ I+ + E I +P +L T Sbjct: 291 AVRDGKI-AATVFQNPDRQAEEALEAALQYIHGEKP-ESKIMIPFELVTADN 340 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 116/301 (38%), Gaps = 19/301 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M M+ + + ++ LLG A + A IG + + + A Sbjct: 1 MIEAMKYMKWITVLFCLLGLAACRQDA-PRFRIGVAQCSDDSWRHKMNDEILREAMFYD- 58 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V + +A D K++ V + + VD +I+SA + V A + GIPVI + Sbjct: 59 GVSVEIRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDR 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV-CVQRR 179 I + +AY+ D E G+ +GN Y ++ + + + ++R Sbjct: 119 KI----LSDKYTAYIGADNYEIGRAVGN----YIASSLKGKGNVVELTGLGGSTPAMERH 170 Query: 180 KGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF + S P +++ + + A + ++ P ++A+ + GA +A Sbjct: 171 QGFMAAI-SNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKIDAVYAHNDRIAPGAYQA 229 Query: 239 VRNQNQAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 + + ++ G D + + +N VL A G+ V + ++ K+ Sbjct: 230 AKKAGREKEMIFVGIDALPGKGNGLELVLDN-VLDATFIYPTN--GDKVMQLAMNILEKK 286 Query: 296 A 296 + Sbjct: 287 S 287 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 115/267 (43%), Gaps = 17/267 (6%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIE----TNAQGDISKESTFVDTLVARN-VDAIILS 94 + ++ + QGVQ A++ ++ + N GD+ K+ + + L+ N +D ++++ Sbjct: 88 SDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNNDLDGLVIA 147 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 + +A++ GI VI +T I+ + +V+ D E G+ LG Sbjct: 148 PEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQILTFVTF----DNFEGGQILGEWVIQKL 203 Query: 155 IANKIDQPKIAVINCEAF---EVCVQRRKGFEEVLKSRVPGA--QIVANQEGTV-LDKAI 208 + KI ++ E E ++RR+GF E LK +I+ + KA Sbjct: 204 TQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKSADWETKKAK 263 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 + + + P ++ IM +GA +AV+ N++G I + G D T ++ Q+ Sbjct: 264 MITQAWLEKFPTIDVIMAADDQMAVGASEAVQEANKSG-IIITGFDGTPYGLNAIKTGQI 322 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINKQ 295 A ++ + + + + + K+ Sbjct: 323 -DATINQLPRTQISLITQLMINSLEKE 348 >UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1 Tax=Streptococcus uberis 0140J RepID=B9DT58_STRU0 Length = 322 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 126/298 (42%), Gaps = 18/298 (6%) Query: 28 EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 ++ +++G Y+ +Y + ++ + + ++ + +K+ + + Sbjct: 35 KQRLSVGTTYMTMNNPFYQVINAEIEKEITEKGG--IVYTRDSSLNSAKQVEQLHYFIKT 92 Query: 87 NVDAIILSAVSEN--GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 VD I+++ V + V A + GI VI ++ +++ D V++ +V D G+ Sbjct: 93 GVDVIVINPVKSKDRNIKKAVEEAEQKGIKVIVIDSQLSK---DVKVTSTIVSDNYHAGE 149 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL 204 L +K +I ++ + QR KGF + + ++ + + Sbjct: 150 LLAKDLM-----SKKTSARILLLEHKDAVSGEQRIKGFLDTISAQSQFKVMTKLESLGQT 204 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 + A+ EK+I S D + IM + A +GAV A+ Q I V+G D + ++ L Sbjct: 205 EIAMPAVEKIIQSQKDFDVIMALNDQAAIGAVAALDKQKVDHPILVYGVDGSPDMKNLLA 264 Query: 265 NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE----DGKQW 318 + A V S KMGN +KV N ++ KV VP+ + TK D K W Sbjct: 265 TTSDVTATVSQSPLKMGNQTARIAIKVANGESVPSKVT-VPVKIITKKNIQDFDTKGW 321 >UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0C383_9CLOT Length = 336 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 11/266 (4%) Query: 31 MTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 G +D Q Y +G A +S ++I + D + ++ + ++A +DA Sbjct: 52 YVFGFSVIDMQNPYFITLEGATREAVESG-GYRMITKDPASDAAAQAAQIQEMIAEGIDA 110 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 + L V + +++ +AG+ +I ++ + + +YV AY+ D G G Sbjct: 111 VFLCPVDWEEITDSLKALKDAGVRIINVDSQVKEM---EYVDAYIGSDNHNAGFICGE-- 165 Query: 151 ADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAIS 209 I + D KIA++ C R GFEE + G ++VA ++ G D+A+ Sbjct: 166 --DLIEKRPDGGKIAILECPTQNSINDRITGFEEAIADAEKGFEVVAREDTGGEFDRALE 223 Query: 210 VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN-NQV 268 EK++ PD+ AIM + +GA+ AV + ++G D + +I +E + Sbjct: 224 AAEKILKENPDITAIMCGNDQIAVGAMTAVNLAKMED-VIIYGVDGSPDIKKEFKKAGCQ 282 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINK 294 + S MG + ++ Sbjct: 283 IAGTAAQSPINMGKTAAKTGISILKG 308 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 21/297 (7%) Query: 28 EKEMTIGAIYLDT-QGYYAGVRQGVQ---DAAKDSSVQVQLIETNAQG--DISKESTFVD 81 E E+ +G++ Y+ +++G + K++ + L +AQG D + + V+ Sbjct: 68 EGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQGQLSIVE 127 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 ++ + A++LS +S+ V +A + IPVI N I K D +V + + Sbjct: 128 DMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGI-IKNADIFVGPKAIMN--- 183 Query: 142 FGKKLGNAAADYFIANKIDQPKIAV-INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 G AA++ + ++A+ I QR GFE +KS G +IV Q Sbjct: 184 -----GELAAEWISKKIGGEGEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVKIVEKQN 238 Query: 201 GTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 KA + E I P+L AI + LG +AV + I V G D E Sbjct: 239 ADWDRAKAKDLAEIWIKKYPNLKAIFCNNDVMALGVQEAVNASKR--DILVVGVDGIKEA 296 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + + + + A VD G L+ + Q +VI P L T + Sbjct: 297 YESIRKGE-MDATVDSFPLYKGQIAVEMALRSLGGQ-QLPRVIWTPQALIDSTNVNE 351 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 130/296 (43%), Gaps = 18/296 (6%) Query: 24 ARAAEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 ++ A+K++ +G Y + + + A + V++++ + D + + V+T Sbjct: 47 SKPADKKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIY--DGNYDPNTQINQVET 104 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 +++ VDAIIL+ + V +A+ A IPVI NT ++ + + ++Y+ + Sbjct: 105 MISDGVDAIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKL----TSYVGSKDVYA 160 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 G+ A AD + I +++ ++R +G + VLK + P +++A + Sbjct: 161 GELEMQAIADKI----GGKGNIVILDGPLGQSAQLERSEGIQNVLK-KYPDIKVLAEKTA 215 Query: 202 TV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 +A++V E + + ++A++ E+ LGA KA+ + I G D T+ Sbjct: 216 NWSRSEAMTVMENWLQAFDKIDAVVAENDEMALGARKAIEAKKL--DIPTIGVDGITDAL 273 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 +E ++ A + G G+ + + + +K + + TK + Sbjct: 274 DAVEKGTLI-ATIFQDGAGQGSKALEIAVAKAKGE-NVDKEYWIDFEPVTKDNVAE 327 >UniRef50_C9A2C8 Periplasmic ribose-binding protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C8_ENTGA Length = 352 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 77/310 (24%), Positives = 145/310 (46%), Gaps = 19/310 (6%) Query: 10 NLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETN 68 ++L+A+ + A +++ + T+ I + DT Y+ +++G +DAAK+ + + Sbjct: 15 TMVLLASGCSNGSSAASSDNDKTLYFIPIVDTGAYWNPMKKGAEDAAKELGYTLVTKTSP 74 Query: 69 AQGDISKE--STFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 + KE F+ A+NV I ++ + + ++ A + IPVI ++ + Sbjct: 75 SAEPSKKEKHIGFIKEATAKNVAGIAIAPIEKKAFVDPIKAAMDKDIPVITFDADLENPD 134 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRK----G 181 +AY+ D + GK+LG AA+ I IA++ + A + R K G Sbjct: 135 DR---TAYVGTDNVSAGKELGKRAAEEMKEKGITGGSIAIVCVDVAQPTMIDREKGLKEG 191 Query: 182 FEEVLKSRVPGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAIMG-ESGGATLGAVKAV 239 FEEV + + +A Q+ ++ E I + DL + S G +G + A+ Sbjct: 192 FEEVYGTDAKNFKFLATIQDNDQPSESKKQLEGYISANKDLVTVFSLGSEGPDVGVMSAI 251 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 +Q ++GKI +G D T + +E+ ++ A+VD ++G V +K I DGE Sbjct: 252 ESQGKSGKILHYGFDYTDTWLKGIEDGRI-TAIVDQDAYQIGYQVIENLVKAI----DGE 306 Query: 300 KV-IQVPIDL 308 K+ +PID+ Sbjct: 307 KIDATIPIDV 316 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 130/312 (41%), Gaps = 18/312 (5%) Query: 9 RNLLLMATLLGSALFARA---AEKEMTI-GAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 R LL + G+ + A AE ++TI G++ ++ + ++ A+ V + Sbjct: 24 REFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVNLT- 82 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 E++ Q +K++ ++ + + V+AI++S + N + + A +AG+PV+ + ++ Sbjct: 83 -ESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVDG 141 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 + A++ D + K G A A +A + K+ + + R KG Sbjct: 142 VQG---ILAHVGADNV----KGGEAEASAMVAAFPNGAKLFHLQGQPGAGPAIDRNKGVH 194 Query: 184 EVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 VL QI+ Q +A+SV E + + +AI+ + LGA++A + Sbjct: 195 NVLDPLKDKYQIIFEQTANFARAEALSVTEAGLAANGKPDAIICANDDMALGALEACAAR 254 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI-NKQADGEKV 301 N + ++G D E + + + L V+ + + NK EK+ Sbjct: 255 NFTD-VKIYGFDALPEALVAVRDGK-LAGTVEQFPGQQSRTAVQIAVAYAKNKTEPKEKL 312 Query: 302 IQVPIDLYTKTE 313 + + + K Sbjct: 313 VLLTPIVIGKDN 324 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 109/293 (37%), Gaps = 16/293 (5%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65 R L L L R IG + + + ++ +++ Sbjct: 4 RRYHILFLYFALFACLACQRERNPRYVIGVSQCSEDLWRQTMNEELKREVALYQADAEVL 63 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 + + D K+ ++ + + VD +++S + + +A + GIPVI + I + Sbjct: 64 IRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATE 123 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEE 184 +AY+ + + GK+ G A + IA + + +R KGF + Sbjct: 124 S----YTAYVGANNYQIGKEAGLYAIGVLK----GKGNIAEVRGTKGSTSDAERHKGFVD 175 Query: 185 VLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 LK P QIVA G L A + +++ P ++ + + G +A N Sbjct: 176 ALK-NAPEVQIVAETWGNFLQADAKTQMQQIFQEHPHIDLVFAMNDPMAAGTHEAAMQFN 234 Query: 244 QAGKIA-VFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 GKI + G D ++ + N V A G V +K+++KQ Sbjct: 235 --GKIPFIIGVDALQQVGIQNIENSVQDASFIYPTG--GEKVIELAMKILHKQ 283 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 113/299 (37%), Gaps = 18/299 (6%) Query: 27 AEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A+ + IG D Y+ GV+ A+++ ++V + + + ++ + L+ Sbjct: 36 AKDPLKIGYSVYDLQNPYWQSYAAGVRAGAEEAGIEVVI--ADQKSSQQEQVSGSLDLIN 93 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + + A+I++ V + T+ A IPV+ + G + Y++ + E G+ Sbjct: 94 QGISALIITPVQPSALPSTIDAAHGEKIPVVVADI-----GTEGDYDGYILSNNYEGGRL 148 Query: 146 LGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVL 204 + + V +R GF + L +IV++ +G + Sbjct: 149 AAEHVVEKLGGTPGPHQVGVIELHAGSVVGEERVSGFVDRLGEE-ENFEIVSSLDGNDTV 207 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN--QAGKIAVFGSDMTTEIAQE 262 D + + ++ + P+L+ I + + +GA +A+ A + G D + Sbjct: 208 DGGFTAAQDMLSANPELDVIYAANDDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDL 267 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG-----EKVIQVPIDLYTKTEDGK 316 +E V+ V G L ++N + G K I P+++ T + Sbjct: 268 IEQG-VMSGTVAQDPFGQGQKAVETALALLNGEDPGYSDEATKTIYFPVEMVTAENVAE 325 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 116/297 (39%), Gaps = 15/297 (5%) Query: 21 ALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDS-SVQVQLIETNAQGDISKEST 78 A A + K I Q + + G + AA ++ ++ I + ++ Sbjct: 46 AQAADPSVKTYNFVFIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQ 105 Query: 79 FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGD 138 V+ + DAI+++ G + +A+ AGIP+ N K V ++ D Sbjct: 106 LVEQAITDGADAILITPADSTGIVPAIEKANAAGIPIAT----PNTKAYGGDVLTWIGVD 161 Query: 139 PLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVA 197 G +LG A + K+ +I +R G+ + K PG +++ Sbjct: 162 NYTVGYELGTALCEAL----EGTGKVVLIEGTAGNSTSTERVDGYLDAFK-NYPGIELLD 216 Query: 198 NQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 +Q +K ++V E + P+++ + + T+GA++A + + ++ D+ Sbjct: 217 SQPADFNREKGMTVMENFLQRYPEIDGVGSINKDMTMGAIEACKAVGRDKEMVQVTFDVD 276 Query: 257 TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + ++ +L ++ NA++A L + E+ +P+ L TK Sbjct: 277 NDCLDAIDAGDILITGAQEEKSQIANAIYACLLACNGYKVAPEQ--YIPMTLVTKDN 331 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 121/295 (41%), Gaps = 25/295 (8%) Query: 30 EMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 + I + T ++ V G A+++ V V + D+ + V + VA+ V Sbjct: 40 RLRIAVVPKGTTHEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGV 99 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 I+L+ + VR A +A IPV+ +++ + D +VS ++ D G+ G Sbjct: 100 SGIVLAPLDATALRAPVRAARQAKIPVVVFDSDL---ASDDHVS-FVATDNEAAGRLAGE 155 Query: 149 AAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQE--GTVLD 205 + K+ V+ + Q R KGF + +++ +PG + + + G + Sbjct: 156 HLGKAI----GEDGKVVVLRYQEGSASTQHREKGFLDAVRA-MPGVTVASENQYGGATTE 210 Query: 206 KAISVGEKLIIST----PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 A E L+++ + + + T G ++A+R N A K+ G D + ++ Sbjct: 211 SAFHKSESLLLAQRAAEGAIAGVFTPNESTTFGMLQALRKTNVARKVKFVGFDASEKLLG 270 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV---IQVPIDLYTKTE 313 L + +A+V + MG +K + GEKV I + T+ + Sbjct: 271 ALREGDI-EALVVQNPFNMGY----VAVKTMVAHLHGEKVAARIDTGSRVVTRQD 320 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 132/304 (43%), Gaps = 16/304 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M K L + LL S A A +K + + + Y+ + ++ A+ Sbjct: 3 MKGKRLLIAALAVGVPLLASG--ASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGY 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + ++ +GD + ES +DT + +AIIL + +GS VR+A EAGIPV N Sbjct: 61 EADV--SSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINA 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 INQ+G+ + A LV + + A +I + D + + + R Sbjct: 119 EINQQGLAE---AQLVSNNAQG----AALGAQQWIKSVGDSARYVELKGAPSDNNAATRS 171 Query: 180 KGFEEVLKSRVPGAQIV-ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 G+E VL S+ PG + V ++ + + + ++ + PD++ ++ + LGA+ A Sbjct: 172 NGYETVL-SQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISA 230 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK--KMGNAVFAQTLKVINKQA 296 ++ + + V G D + + + ++ ++ V+ +M + + + Sbjct: 231 LKEAGKLDDVVVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGV 290 Query: 297 DGEK 300 DGEK Sbjct: 291 DGEK 294 >UniRef50_C2L0C0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2L0C0_9FIRM Length = 337 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 66/340 (19%), Positives = 139/340 (40%), Gaps = 33/340 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE-----------------------KEMTIGAIY 37 M + R L+ LG+ + + + K+ + Sbjct: 1 MKKRTRMYVMSLVFGMALGALVGCSSKQDSNNESSSKVSEKAQENSDKNTAKKSFVFCTN 60 Query: 38 LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVS 97 + + + ++ + + ++ + D++K+ + + DA+ + V Sbjct: 61 TLNNSFQSSMDAKFKELCDKNGIAYTCLDPD--YDLNKQLSQLSDCANSGYDAVFVIPVD 118 Query: 98 ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN 157 +G + + S+A IP+ +T + ++ ++KYV+ ++ + G+ +G A + Sbjct: 119 SSGITAGLAEISDAKIPIYNVDTAVIEEDMNKYVTQFVGTNAFMAGELVGKQLA----SK 174 Query: 158 KIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLII 216 D KIA+++ + E CV R GF + L + IVA Q+G DK++ + E ++ Sbjct: 175 HPDGAKIAILDFPSNESCVDRVNGFMKGLGEQKDKFTIVAQQDGGAALDKSLGLAEDILT 234 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 + DL+A + + LGA A++ N+ GK+ V+ D + E Q L + AV Sbjct: 235 ANSDLDAFFCINDPSALGAAAAIKASNKKGKVEVYSIDASPEGKQALLDGD-FTAVAAQV 293 Query: 277 GKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 ++ F + + + EK + + L K E K Sbjct: 294 PLQIAEHAFNEAMN--GEGKSSEKKVYLDSHLVDKEEAEK 331 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 115/299 (38%), Gaps = 20/299 (6%) Query: 28 EKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 + + TIG + + Y + + ++ AA+ Q + +A D SK+ + V+ + + Sbjct: 46 DSKYTIGMSQANLAEPYRVRMDEDIRKAAEKV-PQFDVQFADAAKDNSKQVSDVENFMTK 104 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 VD +++S + V++A GIPV+ + + + + Y+ D ++ G++ Sbjct: 105 KVDLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGEA----FTTYIGADNVQIGRQA 160 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEV-CVQRRKGFEEVLKSRVPGAQIVANQEGTV-L 204 G + + KI + + +R KGF E + ++V +G Sbjct: 161 GEYFKNTLLPQ---GGKIVQLKGLSGSTPAAEREKGFMEGIAG--SKIEVVDTADGEWER 215 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT---EIAQ 261 + L+ + PD+ A+ ++ GA A + + + G D + Sbjct: 216 SVGQQKMDALLKAHPDIQAVYAQNDPMAEGAWLAAQAAGRKD-LKFVGIDGLPIESGGIK 274 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 +E ++ + +G G K++ K +P +L T+ + + Sbjct: 275 AVEQGRLSATNLYPTG---GEEAVEAARKLLIDCQPVPKEQTLPTELVTRENAAQVYTR 330 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 128/321 (39%), Gaps = 29/321 (9%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ +L++ + L +K + IG + V ++ A V L Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCCGGVWREKVNNEMRQAQYQYK-NVDL 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + T A+ D ++ +D+++AR VD I+++ + N + + RA A IPVI ++ + Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKT 119 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 + +A + GD +E G+++ A + + + + I + ++R +GF Sbjct: 120 P----HYTASIGGDNVEAGREV----ARFLASKLDGKGTVVEITGLKDASPVIERHRGFH 171 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 EV+K PG ++V + L++A + ++ + + + G S +GA + Sbjct: 172 EVMK-NYPGIKVVTLESNWKLERAQELMKQYLDKGGHADGVFGHSDLGAIGAFLEAERRG 230 Query: 244 QAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 ++ + G D E ++ Q + V G + + ++ Sbjct: 231 IDKQMLIVGIDGLPGEWEGVDRVKRGQFAASYVY---PTQGEKIMELAMNILQG------ 281 Query: 301 VIQVPIDLYTKTEDGKQWLAT 321 Y K K +LAT Sbjct: 282 ------KPYKKDNVMKSFLAT 296 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 17/319 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M R T A LG+AL A +A+ I ++ G + AK+ Sbjct: 1 MKLTRRLTLAAFAGALALGTALPAFSADLIAII--TPAHDNPFFKAEAVGAEAKAKELGY 58 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + L+ + D +K+S +DT + R AIIL + S V++A +AGIP + Sbjct: 59 ETLLMTHD--DDANKQSEMIDTAIGRGAKAIILDNAGADASVAAVKKAKDAGIPSFLIDR 116 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK-IAVINCEAFEVCVQRR 179 IN GV A +V + + A F+ ++ + ++ E+ R Sbjct: 117 EINATGV---AVAQIVSNNYQG----AQLGAQEFVKLMGEKGNYVELVGKESDTNAGIRS 169 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +G+ +V+ P + VA Q +A S E ++ + PD+ ++ + +GA+ A Sbjct: 170 QGYHDVIDD-YPDLKSVAKQSANWSQTEAYSKMETILQANPDIKGVISGNDTMAMGAIAA 228 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI-NKQAD 297 ++ + + V G D + ++ +++ + KA V Q I NK Sbjct: 229 LQAAGRKD-VIVVGFDGSNDVRDSIKSGGI-KATVLQPAYAQAQLAVEQADAYIKNKTTP 286 Query: 298 GEKVIQVPIDLYTKTEDGK 316 E+ + L GK Sbjct: 287 KEEKQLMDCVLINADNAGK 305 >UniRef50_B8E1T5 Rhamnose ABC transporter, periplasmic rhamnose-binding protein n=2 Tax=Dictyoglomus RepID=B8E1T5_DICTD Length = 334 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 125/282 (44%), Gaps = 16/282 (5%) Query: 27 AEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A+K+ IG + ++ V +G Q+AAK+ + V + + A + + +++++A Sbjct: 22 AQKKYVIGLVTKTAGNPFFEAVNKGAQEAAKELGITV-IHQAPAASSVQGQIDIINSMIA 80 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + V AI +SA + R+A GIPV+ +++ + +G +V ++ Sbjct: 81 QKVSAICISANDPDALVPVCRKAQLRGIPVVTFDSAVKPQGRKLFV-------NQADMEQ 133 Query: 146 LGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF--EEVLKSRVPGAQIVANQEGTV 203 +G + +IA+++ + + EE+ K ++VA G Sbjct: 134 IGRIQVQLLAKMINYEGEIAILSAASTMANQNTWIAWMKEELKKPEYSKMKLVAIVYGDD 193 Query: 204 -LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 +K+ + L S P+L I+ + A +A+ + +GK+ + G + +E+A+ Sbjct: 194 IREKSYNEAMGLFKSYPNLKGIIAPTTVGIAAAARAIEDAGLSGKVQLTGLGLPSEMAEY 253 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD---GEKV 301 ++ KA + +G A T +++N++ GEKV Sbjct: 254 VKRGT-CKAFALWNPIDLGYATIYATYRLLNREIKGNVGEKV 294 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 111/276 (40%), Gaps = 11/276 (3%) Query: 29 KEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 + I ++ + +GV+ V+V L ++ D+ + T +++ + + Sbjct: 63 SDKKYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQG 122 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA---YLVGDPLEFGK 144 D I ++ +S + A+ GI ++ + ++ + A ++ D + G Sbjct: 123 YDGIAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGA 182 Query: 145 KLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 K A Y + + K+A+I + + R +G ++ I + Sbjct: 183 K----GAQYIVDTAGEGAKVAIIEGKSGNQSSEDRTQGAKQAFTDGKMDI-ISSQAADWD 237 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 KA+ + LI PDL I + G LGAV+AV N N+ G+I + G+D E + Sbjct: 238 RQKAMDIASTLIQQNPDLKGIYCCNDGMALGAVQAVINANKLGEIMIVGTDGDAEAVSSI 297 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 NN+ L A V ++G ++ + GE Sbjct: 298 ANNE-LSATVAQDPAQIGATSLDLLIEAVESGKKGE 332 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 116/317 (36%), Gaps = 16/317 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMT---IGAIYLD-TQGYYAGVRQGVQDAAK 56 M LLG A+ ++ GA Y+ Y+ + +G+++ + Sbjct: 1 MKIGTGLLILTAGAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVE 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 + L+ + D K++ + ++ + + L+ V + EAG+ +I Sbjct: 61 ANGD--ILLTRDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGII 118 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV 176 +T + + V + + D + G+ + + D+ KI +++ Sbjct: 119 NVDTVVKDRDS---VISIIETDNYQAGQ-----LCALDMMKRKDEAKIVILDNPIQTSIT 170 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 R +GF + + + ++ + V L+ + I+G + LGA+ Sbjct: 171 NREQGFLDTIADNHNYQVVYREAAAGEIEVSSHVMADLLRRDISFDVILGGNDPTALGAL 230 Query: 237 KAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A++ + + ++G D + + L+ V S + +G + ++ + Sbjct: 231 AALQQARREEGVLIYGIDGSPDFKAILDVGYV-TGTSAQSPRSIGRKAAETAYRYLDGE- 288 Query: 297 DGEKVIQVPIDLYTKTE 313 EK I +P + T+ Sbjct: 289 PVEKYISMPSTMITRDN 305 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 117/297 (39%), Gaps = 13/297 (4%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 T L A L+ A A AA + ++ +G + A + Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + D++K++ ++T +AR AIIL + + +++A AGIP + IN Sbjct: 61 VASHD--DDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREIN 118 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK-IAVINCEAFEVCVQRRKGF 182 + G+ + +V + + A+ F+ + K I ++ E+ R +G+ Sbjct: 119 ETGI---AVSQIVSNNYQG----AQLGAEKFVTLMGGKGKYIELLGRESDTNAHVRSQGY 171 Query: 183 EEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 +V+ ++VA Q +A + E ++ + PD+ ++ + LGA A++ Sbjct: 172 HDVIDEHS-DMKMVAQQTANWSQTEAFNRMESILQANPDITGVISGNDTMALGAEAALKA 230 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + V G D + + + NN +KA V G Q + + G Sbjct: 231 AGRND-VVVVGFDGSDYVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKTGKTG 286 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 104/238 (43%), Gaps = 11/238 (4%) Query: 39 DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSE 98 + + + + + AK V+ LI+ NA D++ +++ ++ ++A+ +I++ + Sbjct: 92 TSNPFRSTETDSITNQAKSLGVK--LIQRNANADVNAQNSQIEDMIAQGAKVLIVAPENS 149 Query: 99 NGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK 158 +G + A IPV+ + + ++ A++ + AAD Sbjct: 150 DGLGPALAEAKAKKIPVLTIDRTVTGTACSDFI-AFIGSNFYG----QAQIAADDLATAT 204 Query: 159 IDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLII 216 Q K+A+++ V R GF++ +K++ P +VA+Q G SV +++ Sbjct: 205 GSQAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKFDQTDGQSVMAQMLQ 264 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAV 272 + P + A+ E+ LGA++A+ + I + D T + Q++ + V Sbjct: 265 ANPGITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQQAVQDVAAGTIYADV 322 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 118/291 (40%), Gaps = 14/291 (4%) Query: 26 AAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 AA I + T ++ + +G + A K+ + + + + I ++ ++ L+ Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLI 103 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA---YLVGDPLE 141 DAI+++ ++ A EAGI +I + ++ + + A ++ D Sbjct: 104 RMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDN-- 161 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 +K +A + + A++ + + QRR G E + P ++VA + Sbjct: 162 --EKAAYESAGFIAREIHKPAQAAILEGIRSADNSRQRRVGAERAFREN-PLIRLVARES 218 Query: 201 GTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 +D+ V +L PD+ + + LGA++ ++ + G + V D E Sbjct: 219 ANWKIDEGRDVTRRLFSDHPDITLLFCANDMMALGAIQFLQESGRYG-VKVAAYDALEEA 277 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 + + + + ++ V+ + G +V+N +A E V+ V L T Sbjct: 278 KRAILSGR-MEVTVNQQAAEQGYQGIILASRVLNGEAVPE-VVLVETSLVT 326 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 11/248 (4%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 +L Y+ G G+Q AAKD V+ Q DI++E T + ++A++ I+++ Sbjct: 61 VTFLSGIEYWKGCFAGMQAAAKDLGVKAVFTGA-PQYDINQEVTTMQQVIAKHPAGILVT 119 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 +++ + + +A AGIPVI +++ Q AYL +E G+K AADY Sbjct: 120 SINAQAMTPVINQAIAAGIPVISFDSDAPQSKR----YAYLGTSNIEAGQK----AADYL 171 Query: 155 IANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEK 213 ++AVI QR +GF++ + ++ PG ++VA Q G K V Sbjct: 172 GQALGGHGEVAVITTPGELNLDQRVQGFKDEMAAKYPGVKVVAVQNGNSDQIKTAQVTSA 231 Query: 214 LIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 L+ + P+L I GA AV+ + G + + D +++ Q+ A V Sbjct: 232 LLQTYPNLAGIFCTEADEGTGAATAVQEAGKTGTVKIVSFDTDKATLNAIKSGQI-TATV 290 Query: 274 DISGKKMG 281 MG Sbjct: 291 AQGTWNMG 298 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 120/303 (39%), Gaps = 10/303 (3%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + A+ + IG + + Y + ++ AA + Q ++ +A D +K+ V+ Sbjct: 41 KGADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEV-PQFEVKFADAAQDNAKQVADVENY 99 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + + +D +I+S + V++A + GIPV+ + + + ++ GD ++ G Sbjct: 100 ITQQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDA----YTGFIGGDNVQIG 155 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 + G A+ + N + + +R +GF +K+ P ++VA G Sbjct: 156 TEAGKYVAEKVLPN--GGNVVEIKGLAGATPQAERNQGFATGIKAN-PKVKVVATASGDW 212 Query: 204 -LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 +K + + L+ + P ++ + + GA A + + ++ G D + Sbjct: 213 LREKGQAQMDALLKANPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIGIDALPIPSGG 272 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH 322 ++ + + + G A K++ EK +P L KT + + + Sbjct: 273 IKAVEQGRLTATFTYPTNGKEAIAAAKKLLVDCGTIEKTQTLPTRLIDKTNAAQIYAQEN 332 Query: 323 VDG 325 G Sbjct: 333 PTG 335 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 115/308 (37%), Gaps = 19/308 (6%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 L L+ L+G IG + + + A V++ A+ Sbjct: 6 LFLILCLMGILTSCSQKHTRYYIGVSQCSDDEWRHKMNHEIVREALFYD-GVEVEIRTAK 64 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 + + ++ + R VD +I++ + V +A GIPV+ + I + Sbjct: 65 DNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKI----LSDR 120 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSR 189 +A++ D E GK +G Y + + KI I E ++R +G + LK+ Sbjct: 121 YTAFVGADNCEIGKDVG----QYIVNRLGGKGKILEITGLEGSTPAMERHRGLADALKAE 176 Query: 190 VPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKI 248 PG +I A+ +G L A + ++ +N + ++ +GA + R + ++ Sbjct: 177 -PGIEITASVDGAWLQSVAGEKMDSILQDNKGINLVFAQNDRMAVGAYLSARQRQLEKEM 235 Query: 249 AVFGSDMTTE---IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVP 305 G D +++ VL A G+ V + ++ K E+ ++ Sbjct: 236 LFVGIDALPGKGYGVEQVLEG-VLDATFIYPTG--GDKVMQVAMDILEK-RPYERDTKLS 291 Query: 306 IDLYTKTE 313 L KT Sbjct: 292 TALVDKTN 299 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 132/317 (41%), Gaps = 21/317 (6%) Query: 5 MRTTRNLLLMATL-LGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQV 62 M+ + ++L+A L +++ A TIG Q + +R + AK + V Sbjct: 1 MKYLKRIVLVAALGCSTSVLAE------TIGVSMAYFDQNFLTIIRHSIDKEAKARGISV 54 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 Q +A+GD+ +++ V ++ VDAII+ V+ G+ + ++AGIP++ N Sbjct: 55 QF--EDARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTP 112 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV-CVQRRKG 181 + V ++ D + G A Q +AV+ + +QR K Sbjct: 113 GDSKLPAGVV-FVGSDEKQSGTLQMEELARLA----NYQGNVAVMIGNLTDAGALQRTKD 167 Query: 182 FEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 E+V+ ++ P ++V Q + + + I + ++ + + +GA+ A++ Sbjct: 168 VEQVV-AKYPKMKVVQKQSANYSRSEGMDLMLNWITNGESIDIVAANNDEMAIGAIMALQ 226 Query: 241 NQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + G K+ V G D T + + L + + ++ V G A ++I + + Sbjct: 227 QAGKQGSKVLVGGIDATPDGLKALSSGK-MQVTVFQDAVGQGKASVDVAQRMIKGE-KLD 284 Query: 300 KVIQVPIDLYTKTEDGK 316 +P +L T K Sbjct: 285 PYYWIPFELVTPANMQK 301 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 122/307 (39%), Gaps = 18/307 (5%) Query: 20 SALFARAAEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKEST 78 +A + TI + + + + G + A + V +++ + GD+ KE Sbjct: 43 AAAAQGEGKDGYTIAVLAWSQAEEFGVDIISGAEKKAAELG-NVTVVKPDPAGDMQKEIA 101 Query: 79 FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGD 138 ++ L+ + VDAI ++ V N + + EAGI ++ Y+ + A ++ D Sbjct: 102 ILEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDIDTEAQC-----DAKVLSD 156 Query: 139 PLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVA 197 G AADY + + K+ ++ +R GF++ + P ++V Sbjct: 157 NAAGG----AMAADYLVQEMGTEGKVLILTEVPGVTTAEERIAGFKDRMAEIAPNVEMVE 212 Query: 198 NQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT 257 D + E ++ + PD+ I G +LGA A + N+ + + G D T Sbjct: 213 QLSNGTRDTHRATTENMLQAHPDITGIFCFMGDNSLGAYTACKTNNRQD-VLIAGYDATP 271 Query: 258 EIAQELENNQV---LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 E ++N+ L V + KK+G ++ + + V+ + L T +D Sbjct: 272 EQLDIMKNDGPDCNLICSVALYPKKIGYVALETAYNILEGE-EINDVVWTELGLLT-AKD 329 Query: 315 GKQWLAT 321 + A Sbjct: 330 ADSFEAE 336 >UniRef50_C1XTQ0 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Bacteria RepID=C1XTQ0_9DEIN Length = 312 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 120/296 (40%), Gaps = 13/296 (4%) Query: 24 ARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 A+K++TI I Y+ QG ++AA + + + +G + K+ ++ Sbjct: 5 MGFAQKQITIAMIPKLVGIDYFNATEQGAKEAAAELGNIRLIYQGPTEGRVDKQIELIEN 64 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + VD I ++A + + +A +AGI V+ ++ N + V + + Sbjct: 65 FITAKVDVISVAANDPVAIAPVLEKARKAGIKVVTWDADANVRDVFCNQATFAG------ 118 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKG-FEEVLKSRVPGAQIVANQEG 201 +G A D + ++A++ ++VL PG ++V + Sbjct: 119 ---IGKALVDEMARQVGKEGEVAIVTSSLTAPNQNAWIAEMKKVLAKDYPGLKVVDTKPS 175 Query: 202 TVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 + A V + L+ + P+L + S A GA +AV+ +AGK+AV G ++ Sbjct: 176 EEDQQLAFRVTQDLLKAYPNLKGVWALSSVAFPGAAEAVQQAGKAGKVAVVGLSTPKQMK 235 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 ++ V+K+VV + +G +++ K I +T +D K Sbjct: 236 PFMKAG-VIKSVVLWNPIDLGYLSVYAAKQLVEKGLKEGDKIVTKRGTFTVQKDDK 290 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 77/299 (25%), Positives = 129/299 (43%), Gaps = 17/299 (5%) Query: 28 EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 KE+TIG + Q ++ ++Q V+ K V++ I +AQG+ S + + ++ L+ R Sbjct: 26 AKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKI--ITVDAQGNSSTQVSQIEDLITR 83 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 +DA+I + V+ A AGIPVI + D ++ D + K L Sbjct: 84 QIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGD----TFIASDSVAGAKAL 139 Query: 147 GNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL- 204 A+Y + +IA++ + R KGF+E LK PG ++VA Q Sbjct: 140 ----AEYVGKVTDGKGRIAILQGQLGTTPENDRAKGFQEGLKG-FPGLKVVAEQPAEWAQ 194 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 DK +V + L+ P++ G + LGA +AV+ N + + V G D + + Sbjct: 195 DKGFAVAQDLLQRDPNITVFFGRADAMALGAAQAVKVANLSQPVVVVGFDGDVAGLKAVA 254 Query: 265 NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHV 323 + VL+A + +KMG A L + K + L TK +L H Sbjct: 255 SG-VLQATMTQQTQKMGRMAVASALD-LKAGKAVPKEQLLETVLTTKDNVAP-FLQQHP 310 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 136/317 (42%), Gaps = 24/317 (7%) Query: 10 NLLLMATLLGSALFARA--------AEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSV 60 +L+ +++G ++ + E + IGA Y+ Y+ + + ++ +++ Sbjct: 15 SLVFCTSIIGICIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGD 74 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 LI + + K+ + + VDAI ++ V G + A +AG I Sbjct: 75 --TLITRDPALSLDKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAG---IIIIA 129 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 D + +V D + G NK + I ++ ++ + + R Sbjct: 130 IDTDIYDDDLTACTVVSDNYKAGVLCAEDLM-----NKRNSANIILLEHKSAKSAIDRIN 184 Query: 181 GFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GFE+ +++ ++VA + L+ A+ V E +++ D++ IM + + LG + A+ Sbjct: 185 GFEDAIRNN-KNFKVVARSDCDGQLETAMPVVENILLKQKDVDTIMALNDPSALGGIMAL 243 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 +N G I V+G D + + + ++ ++ + A V S +K+G + + + + Sbjct: 244 EEKNIKG-INVYGIDGSPDGKKMVKEDK-MSATVSQSPRKIGRISGESLYNIFQGK-EVD 300 Query: 300 KVIQVPIDLYTKTEDGK 316 K I VP++L TK + Sbjct: 301 KKIVVPVELITKENIDE 317 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 122/295 (41%), Gaps = 16/295 (5%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSS--VQVQLIETNAQGDISKESTFV 80 + ++ I I Q ++ + + + +D + + V+++ +I ++ V Sbjct: 47 TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + + +DAI+++ G +++A++AGI V+ NT N + YV A Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDIVSYVGAQ------ 160 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 +G + A Q K+ +I + +R +GF+E LK PG +++A+Q Sbjct: 161 --NFDVGYSLATALFEKLGGQGKVILIEGKAGNSTSEERAEGFKEALKE-YPGIELLASQ 217 Query: 200 EGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 A++V E + + ++ ++ + LG ++A+++ + +I D+ + Sbjct: 218 PADWDRASAMTVMENCLQTYDQIDGVLTLTKDMGLGTIEAIKSAGRDKEIVSMTFDVDDD 277 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + L+ + A + + + + ++ I PI + T + Sbjct: 278 VISALKAGDLY-ASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIM-PITVVTAED 330 >UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RJP3_9CLOT Length = 359 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 129/283 (45%), Gaps = 11/283 (3%) Query: 33 IGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92 + Y+ V G Q + ++ Q++ +++ D++ + ++V+ V R+VD I+ Sbjct: 82 VYVTQDSANPYFIQVYDGFQSKCAELGIKTQIL--DSKYDVATQVSYVEDAVQRDVDGIM 139 Query: 93 LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152 +S + EN V +A E GI V ++ +D + D G +GNAAA+ Sbjct: 140 ISPLDENALKTVVDQAKEKGIVVSAEAQPVSNAQIDGSL------DEYNIGYAIGNAAAE 193 Query: 153 YFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGE 212 + A + + + ++ + E ++R G + + P A++VA Q + D + V E Sbjct: 194 WIKAEQGGKGRALILAQDDVEAVIRRGDGINDGILENAPEAEVVARQNASNTDLGMKVTE 253 Query: 213 KLIISTPDLNAIMGESGGATLGAVKAVRNQNQ-AGKIAVFGSDMTTEIAQELE-NNQVLK 270 ++++ P++N I +GA +AV + + G D T E ++++ N V + Sbjct: 254 SVLLAKPEVNVICACDDFTAIGAYEAVSAMQKIPDNFYIGGCDATDEGKEKMKVENSVYR 313 Query: 271 AVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + ++ + G + K + ++ + + V+Q + + + Sbjct: 314 SSCNLFPYEAGEDLAEAMYKYLTEKQE-DAVVQRRYEPVWQKD 355 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 11/247 (4%) Query: 29 KEMTIGAIYL--DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 ++ +G + + AG + V+DAAK V+ +LI TNA + S++ V+ ++ + Sbjct: 54 SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVR-RLIYTNAHSNQSRQVADVENMINQ 112 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 A+I++ + G +A+ IP++ + Y+S +L + K Sbjct: 113 GAQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYLS-FLGSNFY---FKQ 168 Query: 147 GNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-L 204 G A +A I V V R KGF LK+ PG +IV Q G Sbjct: 169 GEIDARELAKATGGHAMVAEIQGAYGNSVEVARTKGFAAGLKA-YPGMKIVTEQTGNWFT 227 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-GKIAVFGSDMTTEIAQEL 263 A V +++++ P++NA+ ++ GA+ A+R+ + G++ + D T + Q++ Sbjct: 228 TDAQKVMSQILLAHPNVNAVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTRQGVQDI 287 Query: 264 ENNQVLK 270 + + Sbjct: 288 VDGWIYA 294 >UniRef50_B9K5F9 ABC transporter nucleotide binding/ATPase protein n=12 Tax=Proteobacteria RepID=B9K5F9_AGRVS Length = 319 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 87/312 (27%), Positives = 144/312 (46%), Gaps = 10/312 (3%) Query: 4 KMRTTRNLLLMATLLGSALFARAA-EKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQ 61 RT L + L G +L A A + T + ++ Q ++ + QG Q AA + Sbjct: 7 TRRTINAALAVTALTGLSLTAGIANAAQKTFALVQINQQALFFNQINQGAQKAA--DAAG 64 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 +L+ NA D + +++ ++T + + VD I + A+ NG V++A++AGIPV+ ++ Sbjct: 65 AKLVIFNANNDPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAADAGIPVVAIDSI 124 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKG 181 + A + D + G +G DY + + K+ V+ + R+KG Sbjct: 125 LPAGPQK----AQIGVDNAKAGADIGKFFVDYVKKDMGGKAKLGVVGALNSFIQNIRQKG 180 Query: 182 FEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 FE+ +K V D A++ E LI PD+ AI A LGAV AV++ Sbjct: 181 FEDTIKGVSGITSAGVVDGQNVQDNALAAAENLITGNPDMTAIYATGEPALLGAVAAVQS 240 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 Q++ I VFG D+T + ++ V AV+ MG A + LK I+ EK Sbjct: 241 QSKQDSIKVFGWDLTAQAIAGIDAGYV-AAVIQQDPAAMGEAAV-KALKTISDGGKVEKT 298 Query: 302 IQVPIDLYTKTE 313 I VP+ + TK Sbjct: 299 IAVPVTIVTKAN 310 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 108/284 (38%), Gaps = 15/284 (5%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 + Y+ VR+G AAK V V + D++ + V+ V D IIL+ Sbjct: 49 ITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNNAVTGGTDGIILA 108 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 A + + V+ A IPV+ ++ ++ D +L + L AD+ Sbjct: 109 AQNPQALLKPVKSALAHHIPVVTVDSGLSPNISD----CFLATSNVGAAAALAKYTADHL 164 Query: 155 IANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIV--ANQEGTVLDKAISVG 211 + + + A+++ + R KGF +KS P + + + + + Sbjct: 165 M---GGKGQYAIVDFNHTASTGIARPKGFMLGMKS-YPHIKKMGPIQYSNNDVSAGLRIA 220 Query: 212 EKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKA 271 ++ P L I G + A LG +AV+ + K+ V G D ++ +++A Sbjct: 221 TTMLTQYPHLKVIFGANDRAALGPAEAVQRAHA--KVKVVGFDADLGEIALVKAG-IIQA 277 Query: 272 VVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 + S MG L ++ + K I P L T G Sbjct: 278 SILQSPYDMGYYAVVALLDKLDGKT-LPKRINTPYFLLTPKNLG 320 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 144/342 (42%), Gaps = 43/342 (12%) Query: 1 MPTKMRTTRNLLLMATLLGSALFAR----------AAEKEMT--------------IGAI 36 M K+ ++L +LL +R A E E T IG Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 37 YLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSA 95 + + Y++ + +G+ D ++ +V++ + +AQ D + + + T +A D II+ Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEELNVELDVQ--DAQDDTNTQINQIQTFIAEGCDLIIMMP 118 Query: 96 VSENGSSRTVRRASEAGIPVICYNTCI---NQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152 V +EA IP++ + + + K V + ++ D +E G+K G Sbjct: 119 VQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQ 178 Query: 153 YFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISV 210 D+ IA+I V R++G EE L PG +IVA Q +AI+V Sbjct: 179 LL----GDEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAITV 234 Query: 211 GEKLII--STPDLNAIMGESGGATLGAVKAVRNQNQAGKI-AVFGSDMTTEIAQELENNQ 267 + + + +++AI+ + + LGAV A+++ ++ + V G D+ +E+ ++ Sbjct: 235 TQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKAKD 294 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVI---NKQADGEKVIQVPI 306 + + + + MG + + +++ + ++P+ Sbjct: 295 MYGSTL-QAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPV 335 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 123/316 (38%), Gaps = 21/316 (6%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEK--EMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQ 61 KM + +L A A E+ IG + + + ++ Sbjct: 9 KMTFRKYHILFLYFALFACLACQRERNPRYVIGVSQCSEDLWRQTMNEELKREVALYQAN 68 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 +L+ + + D K+ ++ + + VD +++S + + +A + GIPVI + Sbjct: 69 TELLIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRK 128 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 I + +AY+ + + GK+ G+ A + IA + + +R K Sbjct: 129 IATES----YTAYVGANNYQIGKEAGHYAIGILK----GKGNIAEVRGTKGSTSDAERHK 180 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF + L + P +IVA G L A ++L P+++ + + G +A Sbjct: 181 GFVDAL-NNAPEVRIVAETWGNFLKADAKVQMQQLFQQHPNIDLVFAMNDPMAAGTHEAA 239 Query: 240 RNQNQAGKIA-VFGSDM-TTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 N GKI + G D E +ENN + + +G G V +K+++KQ Sbjct: 240 MQFN--GKIPFIIGVDALQQEGISNIENNVQDASFIYPTG---GEKVIDLAMKILHKQ-P 293 Query: 298 GEKVIQVPIDLYTKTE 313 E+ + + K+ Sbjct: 294 FERENILNTAVVDKSN 309 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 126/316 (39%), Gaps = 14/316 (4%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETN 68 + ++ A + S L AA E ++ L + +R G+ D +K+ V L + Sbjct: 2 KKFIIGAAM--SVLLGTAAHAETVGVSMALFDDNFLTVLRNGMLDYSKELK-GVTLQVED 58 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVD 128 AQ D++K+ + + +A VDAII++ V + ++ + A++A IP++ N Sbjct: 59 AQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSL 118 Query: 129 KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLK 187 A++ D G + ++ E + + R + ++VLK Sbjct: 119 PDGQAFVASDETVAGTLEAKEVCRLL----GGKGNAVIMMGELSNQAARMRTQSAKDVLK 174 Query: 188 -SRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 G +V Q + + + S + NA++ + +GA++A++ + Sbjct: 175 TDECKGISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKD 234 Query: 246 GKIAVF-GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 K V G D T + ++ L V G LK++ EK + + Sbjct: 235 MKSYVVAGVDATQDALAAMQAGD-LDVTVFQDAAGQGKGALDAALKLVKGD-KIEKKVYI 292 Query: 305 PIDLYTKTEDGKQWLA 320 P L T E+ K ++A Sbjct: 293 PFQLVT-PENVKDYVA 307 >UniRef50_A9KMR5 Putative solute-binding component of ABC transporter n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMR5_CLOPH Length = 334 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 130/332 (39%), Gaps = 17/332 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA---AEKEMTIGAIYLDT-QGYYAGVRQGVQDAAK 56 M + L+++ +L ++ +E E TI I Y++ V+ G + A K Sbjct: 1 MKKLLSMMLALVMVFSLTACGSTNKSKDSSEGEKTIYVIVKVLGNQYWSVVQAGAEKAGK 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 D +V ++ T A+ DI + ++ ++ DAI+++ + + ++G P++ Sbjct: 61 DLGCKVVIVGTAAESDIEGQVRYIQDAISAKADAIVVAPLDRTALKNPISEQFKSGTPIV 120 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVC- 175 ++ + + S L+ D +E G+ A + + K I +A Sbjct: 121 LIDSSVEGED----YSTALMTDNVEAGRMAAKEMIARLKAKGVAEDKEGTIAIQAGSTGS 176 Query: 176 ---VQRRKGFEEVLKSRVPGAQIVANQEGTVLD----KAISVGEKLIISTPDLNAIMGES 228 R KGF E P + V N + + D KA++ + + + +L + G + Sbjct: 177 MAINDRLKGFNEYWGENAPASWKVLNDDIKINDGDISKAVAFCQDFLTTYTNLIGVFGPN 236 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 G+T+G V + + + + G D + EI Q + + A + MG Sbjct: 237 NGSTVGFVTGLTEAKRTD-LTMIGFDFSNEIEQMIRGGEYDVASMVQRQYMMGYDGVKTA 295 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 L++ N K++ + + + + Sbjct: 296 LELANGGKVENKIVDTGVLVVDNKNVDSEDVQ 327 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 68/341 (19%), Positives = 133/341 (39%), Gaps = 39/341 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE-------------------KEMTIGAIYLDT- 40 M TK + AT L + A ++T+G Sbjct: 1 MKTKNVKCFFAAIAATTLVVGMVAGCGNTVKADEVSKEESSGSKEIGPDLTVGFAQSGNP 60 Query: 41 QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 + + + +Q +A + V I T+A D++ ++ ++A+++D ++++ + + G Sbjct: 61 NPWMVALTESMQQSADEYG--VNYIYTDANDDMATHVANIEDMLAKDLDILVIAPMEDTG 118 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 + A+E G+PVI + YV+ E G A+ D Sbjct: 119 LEAVLDEAAEKGVPVILSARTTQGE----YVTTVYSDQAWE-----GERCAELIGEKIPD 169 Query: 161 QPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIS-T 218 + + E R KGF +V+ + P +IV Q +A+ ++ + Sbjct: 170 AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFSRQEAMDAMANILQAKG 229 Query: 219 PD-LNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVDI 275 PD ++A+ + LGAV+A+++ I V G D E + +++ ++L V Sbjct: 230 PDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELVKSGEML-GTVQC 288 Query: 276 SGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 S K G VF K+++ + +K VP + TK + Sbjct: 289 SPKH-GPTVFEVIQKILDGET-VQKETIVPDQVITKENVDE 327 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 126/317 (39%), Gaps = 21/317 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M K+ + ++ L G A ++ IG + + + + + Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQ----KPRKFVIGVSQCSEDIWRDKLNDEL-KMGEYLND 55 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + ++ D ++ V+ + VD +I+S + S++V RA + GIPVI Y+ Sbjct: 56 SLIVKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDR 115 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 N +A++ D GK +G A + +I I+ E ++R Sbjct: 116 KTNSDK----YTAFIGCDNYTIGKSMGTFIAQQL----QGKGRIVEISGLEGSSPALERH 167 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF + +K PG Q+VA++EG ++ I ++++ T D + + + GA A Sbjct: 168 RGFMDAIKP-YPGLQVVASEEGNWKEEGGIQAMKRILKQTQDFDYVFAHNDCLAWGAYVA 226 Query: 239 VRNQNQAGKIAVFGSDM--TTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 R G D T EL + + +A K G+ V A +K++ Q Sbjct: 227 ARQMRVKRNYKYTGVDGMATEGGGLELVRDGIFEASYLYPTK--GDEVIALAMKILKHQ- 283 Query: 297 DGEKVIQVPIDLYTKTE 313 E+ + + T+ Sbjct: 284 PYERDNYLSTSIITQAN 300 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 126/318 (39%), Gaps = 17/318 (5%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLI 65 + LL+ + +L A+ A A+ ++G Y+ + Q + AK+ + V++I Sbjct: 23 MIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVI 82 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 ++ D++K+ +D +A VD I+L+A + ++RA AGI V+ + + Sbjct: 83 TVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATD--VAAV 140 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV 185 G D A + + ++ G+ D A +I + N + R G + Sbjct: 141 GAD----ATVQTNNVQAGEIACQYIVDKLGAA---GGQIIIQNGPQISSIIDRVSGCRKS 193 Query: 186 LKSRVPGAQIVANQEGT--VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 L + P I+++ + D+ + + + + ++A+ G+ A + Sbjct: 194 LANN-PKITILSDDQNGKCSRDEGMKIMQGHLTRHRKIDAVFTVCDPQATGSDLAAQQFG 252 Query: 244 QAGKIAVFGSDMTTEIAQELENNQV-LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI 302 + + + D +I + + ++A M +++N + +I Sbjct: 253 R-NEFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKKPDNPMI 311 Query: 303 QVPIDLYTKTE--DGKQW 318 +P L TK D K W Sbjct: 312 LMPSTLLTKDNVADYKGW 329 >UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT9_CLOCL Length = 330 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 129/307 (42%), Gaps = 19/307 (6%) Query: 1 MPTKMR-TTRNLLLMATLLGSALFARAAEKEMT--------IGAIYLD-TQGYYAGVRQG 50 M K+ + ++ +A L+ +F +K ++ I I L+ + Y+ V+ G Sbjct: 1 MKIKINFNIKWIIFIALLISIIVFPFYYQKRISTQNEKIKNISLILLNQSDDYWKNVKLG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 + AAK+ +++ ++ GDI+ + ++ VA VDA++L S V A Sbjct: 61 AETAAKEFDIKLNIVAPEDGGDITIQQNLINEAVAMKVDALLLVPSSFQELVEPVEAAVN 120 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE 170 GI V+ ++ +N ++ + D L GK G +A I + + Sbjct: 121 KGIIVMTVDSKVNTAK----IACCIATDNLSAGKSAGEKLVS--LARMNSVAAIVGFDKK 174 Query: 171 AFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAIMGESG 229 R KG +EV K Q++ + + A + ++LI + D++ I+ + Sbjct: 175 TGSNEFDRYKGIKEVTKD-YKEIQVIDRWCDIKDSNGAERIAKELISNNEDISVIIALNY 233 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 A++G +A+ GKI V D + + +E+ + ++VV S MG + Sbjct: 234 KASIGVARAIEKLGLKGKIKVVAFDGDYQEVKYMEDGTI-QSVVIQSPFSMGYLAVKNAV 292 Query: 290 KVINKQA 296 + ++ Sbjct: 293 LKLQGKS 299 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 106/279 (37%), Gaps = 21/279 (7%) Query: 44 YAGVRQGVQDAAKDS-----SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSE 98 + + G + A+D+ + V + D + + + V + V+A++LS +S+ Sbjct: 106 WQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEGQLSILKDQVRKGVNAVLLSPISD 165 Query: 99 NGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK 158 + A EA IPV N N + ++ + LE G AA++ Sbjct: 166 ANCLPGIEAAHEADIPVYAVNNEFNGADM------FVGPNSLE----QGQLAAEWVNEKL 215 Query: 159 IDQPKIAVINCEA-FEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLII 216 +A++ A V R +GFEE Q+VA Q +A V + Sbjct: 216 GGSGDVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQVVAKQNADWDRSQAKDVAATFLK 275 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVD 274 + PDL AI + LG ++AV+ + I V G D +E + N+ + A +D Sbjct: 276 TYPDLKAIFCNNDVMALGVIEAVKEADLTLNKDIYVIGCDGQSEAYDSIRANE-MAATID 334 Query: 275 ISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 G + + Q +V+ P + T Sbjct: 335 TFPYYEGYMAAEVCYRSLIGQT-VPRVVFTPSKMLDSTN 372 >UniRef50_A9D050 RbsB protein n=2 Tax=Alphaproteobacteria RepID=A9D050_9RHIZ Length = 344 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 119/286 (41%), Gaps = 10/286 (3%) Query: 28 EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 EK YY + +G++ A + V+V ++ + DI+ + + ++ ++ Sbjct: 48 EKFRVAYMPPATEFNYYIAIGEGIKAVAAEEGVEVFMLAPQSGADINGQMGMIQDVLTQD 107 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VDAII E ++ +++A + G+ V+ N+ I + +VG G Sbjct: 108 VDAIIFGTHDEFAAAPLLKQAVDKGMAVVMINSDIANFPTPIHG---VVGYSQRNGT--- 161 Query: 148 NAAADYFIANKIDQP-KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK 206 + A++ I +P + +I + +R GF + +K +V+ ++ Sbjct: 162 HKLAEWAIETYGSKPLNVGIIEGQPGYHSTERVGGFLDGIKGNENFDVVVSIDGKWNVEG 221 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 + G ++ S PDL+ I + +GA A + ++ I + G+D T +E+ Sbjct: 222 GNTAGMDILQSHPDLDMIFAANDYMIIGASFAAKALGRSD-IVLLGNDGDTSGLEEIAAG 280 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 V A V+ S MG A T+ +N G I+ P + K Sbjct: 281 SV-TATVNTSPFLMGKAAMHATIDALNGTYPG-GWIETPTSIEDKD 324 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 131/333 (39%), Gaps = 25/333 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE------------MTIGAIYLDTQGYYAGVR 48 M K + R ++++ +L E E + +G ++ + Sbjct: 1 MKRKNKIFRKVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTAN 60 Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 LI NA+ + + + +++ VD I+ S + E+G +R A Sbjct: 61 TRSVKETLTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREA 120 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK--IDQPKIAV 166 EA IPVI + IN K Y +A++ D +E G+ G DY + DQ I V Sbjct: 121 REAEIPVILMDRKINVKDESLY-TAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVV 179 Query: 167 INCEAFEVCV-QRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAI 224 + A + R +GFEE + ++ I+ K +L+ + P+++ + Sbjct: 180 LQGTAGTTAMFGRTQGFEE-IAAKHENWNILEQTNADFTTAKGEEEMRRLLNTYPEIDVL 238 Query: 225 MGESGGATLGAVKAVRNQNQA----GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + ++ T GA++A+++ + G I V D T + ++++ + VD+ Sbjct: 239 VSQNDDMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAI---NVDVECNPY 295 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + ++ + EK V ++T+ Sbjct: 296 QGKYIEEIIQALETGQSIEKDNYVEEKVFTQKN 328 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 117/310 (37%), Gaps = 10/310 (3%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETN 68 + +LL A + + + AE +IG + V + A S V + + Sbjct: 2 KRILLAAVMAINFSCSAGAE---SIGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQMED 58 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVD 128 AQ D++++ + V +A V AII++ V + + + A++A +P++ N Sbjct: 59 AQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVDRL 118 Query: 129 KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ-PKIAVINCE-AFEVCVQRRKGFEEVL 186 A++ D G A + + V+ + + + QR K +V+ Sbjct: 119 PETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHDVI 178 Query: 187 K-SRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 ++V Q +A+++ + + +A++ + +GA++A+R+ Sbjct: 179 ATPECAFMKVVEEQTANWQRTEAMNLMSNWLSAGIQFDAVIANADEMAIGAIQAMRSAGL 238 Query: 245 AGKIAVF-GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 K + G D + + + L V G L ++ + ++ I Sbjct: 239 PVKDYIVAGIDGGRDGIELMRQGY-LDVTVFQDAAGQGAGALDTAL-MLARGKKTDRTIW 296 Query: 304 VPIDLYTKTE 313 VP L T T Sbjct: 297 VPFQLITPTN 306 >UniRef50_UPI0001973330 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973330 Length = 325 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 123/297 (41%), Gaps = 11/297 (3%) Query: 19 GSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 G+A ++ + I T+ ++ V G AA + +V + ++ D + ++ Sbjct: 24 GTAAHMSRRQERYQVAMIVKSTESAFFQSVFAGAGAAATEYNVSLITEGPESEEDYATQN 83 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG 137 + V DA+++SAV N ++ V A+ GIPV+ ++ +N V + Sbjct: 84 EMIYKAVENGADALVISAVDFNKNAEAVDWAAAKGIPVVVIDSDVNSSA----VKFRIGT 139 Query: 138 DPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIV 196 D E G+ AA D + I ++N E QR +GF E K +IV Sbjct: 140 DNEEAGRMAARAALD----GTDGELFIGIVNFDENTANGQQREQGFREEAKKDSRVKEIV 195 Query: 197 ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 + +D + + L+ + P++N I + +LG A+R+ N+ I+V D Sbjct: 196 TINVPSAIDDTRAATKGLLSTHPEINVITTFNEWTSLGVGWAIRDLNKKDDISVVAFDSN 255 Query: 257 TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 LE +V A++ + MG + ++++++ + L T+ Sbjct: 256 AVSVGMLETGEV-DALIVQNPYAMGYLGVEKAWEILSRRGVEGDKLDTETTLVTREN 311 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 119/280 (42%), Gaps = 14/280 (5%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQ-LIETNAQGDISKESTFVDTLVARNVDAIILSAVSE 98 T + + VQ A++ + + D++ + + ++ V VD II+ VS Sbjct: 9 TNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGIIIEPVST 68 Query: 99 NGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK 158 +G + V+ A + G+ V+ N I+ + ++ D + G A + + Sbjct: 69 DGIVKAVKDAEKVGVKVVILNQRISDQNA---ADTFVGADN----ESTGAALMKKVMEDL 121 Query: 159 IDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLII 216 + I ++ + V R KGF+ VL P +++A+ KA+++ E + Sbjct: 122 DGKGNIVELLGPMGSDGQVGRSKGFDSVLAE-YPDVKVIASDSADWDTAKALTLTENWLT 180 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 S D+ A++ ++ G +GA +A++ KI V+G D T++ + N + V Sbjct: 181 S-SDIQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGG-MTGTVSQG 238 Query: 277 GKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + G +I Q+ ++VI + +YTK + Sbjct: 239 TENQGKISADLCSNLIYGQSVPKEVIATNV-VYTKENVNE 277 >UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZX1_DESAD Length = 312 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 127/297 (42%), Gaps = 14/297 (4%) Query: 23 FARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 F A+ + TI I T ++ V G A +DS + + + S + ++ Sbjct: 4 FPCASYAQKTIVTIPKATIFNFWRIVCMGAHAAVEDSDITLIWRGPRVENKPSAQRHLLE 63 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 + + VDAI+L+ + + + +AS+AGI ++ ++ + +D ++ D + Sbjct: 64 YYIDQKVDAIVLAPMDRKTLNPYIEKASKAGIKIVIIDSPVTTDSID----GFIATDNYK 119 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ-- 199 G A K P + V + C R KGF + +++ PG I+ Sbjct: 120 AGAMGAELMASKL---KGTGPVLVVGHSPDNGSCALREKGFIDKMQALSPGRTIITIHML 176 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 +G+ + +S ++++ +TP + + + + G + ++++N+ I D ++ Sbjct: 177 DGSERETRLS-TKEILTNTPSIAGVFTTNEATSDGVLHVMQDRNETH-IPFIAFDYNQKL 234 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + + N Q+ +A++ +G ++++N + K ++ P+ + T + Sbjct: 235 LEGVRNKQI-EALITQRPYALGFFGVRSAIELLNGK-KISKHMESPVTIITNDNIDE 289 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 126/309 (40%), Gaps = 14/309 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT--QGYYAGVRQGVQDAAKDSSVQVQL 64 + L + + K+ IG + Y ++D V+ Sbjct: 1 MQKKLAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKY-PNVEG 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 I +A G+++++ V L+ + VDAIIL + + VR+A + GIPVI N+ I++ Sbjct: 60 IVLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISE 119 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 KG + +++A+ + + G AA+ + ++ I ++ + R+KGFE Sbjct: 120 KGQE-FITAFSGPNTIT----QGQYAAELMCEGLNGKGQVVQITGQPGYQTAINRQKGFE 174 Query: 184 EVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIST-PDLNAIMGESGGATLGAVKAVRN 241 + L + PG I+ +Q G +K+ V E I ++ + +GA+ A++ Sbjct: 175 DSLAADCPGVSIIDSQPGDWNREKSQRVMENFITRFGTKIDGVYAADDNMGIGALNAIKE 234 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 + I + G+ ++ +VV S A A T+K++N EK Sbjct: 235 ADLKN-IKIVGATNFAVGYDAIKEGSYYGSVV-QSPVSDAIAALAITMKILNGD-KVEKD 291 Query: 302 IQVPIDLYT 310 T Sbjct: 292 NYFDTPKVT 300 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 126/304 (41%), Gaps = 17/304 (5%) Query: 21 ALFARAAEKEMTIGAIYLDTQGYYAGVR-QGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 AL A++ + +G ++ + + +D A QL+ T+A SK+ + Sbjct: 41 ALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGW--QLVMTDANSSNSKQVSD 98 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK--GVDKYVSAYLVG 137 + ++A++VD ++ E + V +A +AGIPVI + ++Q + ++ Sbjct: 99 IQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSVAKAGRDYITFIGS 158 Query: 138 DPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIV 196 D ++ G + AAD+ + + KI + R+KGF+E++ PG I+ Sbjct: 159 DFIDQGHR----AADWLVKATGGKAKIIELEGTTGASAANDRKKGFDEIIAKN-PGMTII 213 Query: 197 ANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGS 253 A+Q G DK V E L+ + PD+ A+ + LGA+ A++ + I + Sbjct: 214 ASQSGDFARDKGRQVMETLLQAHPDVTAVYAHNDEMALGAIAAIKAAGKQPGKDIQIVTI 273 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 D T + + L A V S G + + ++V Y K+ Sbjct: 274 DGTKGGMDAIAAGE-LGASVQSSPF-FGPLACDVAQRYAKGE-KIPTWVKVSDKFYDKSN 330 Query: 314 DGKQ 317 + Sbjct: 331 VQQN 334 >UniRef50_C0C5Y6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Y6_9CLOT Length = 329 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 125/326 (38%), Gaps = 30/326 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE---------------MTIGAIYLDTQGYYA 45 M ++ LL A ++ S + KE + IG I D G++A Sbjct: 1 MKRNVKRIIGALLCAAMVVSMAACGSKAKEEGSDSGKAAKTEGDTIKIGFIPSDLAGFFA 60 Query: 46 GVRQGVQDAAKDSS-VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRT 104 ++ G++ AK+ VQV E D +K+ ++ + II + Sbjct: 61 QLKTGLEKYAKEEGNVQVTTKECI---DSAKKIDAINNFANGGYNVIICHVDNAVALKPA 117 Query: 105 VRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKI 164 + +A G+ Y+T I + D G+ +G +++ ++ Sbjct: 118 MEQAQSKGVYFFAYDTDIEGAD------GFFGADNYAMGQVIGKMLSEWVNKTFDSSEEV 171 Query: 165 --AVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLN 222 ++N + F V+RRKG E +K P IV +Q+ + D+ SVG PD+ Sbjct: 172 QCGILNYDPFPFLVERRKGIEAAIKEEAPNVVIVDSQQAGLEDEGTSVGNAWFTKYPDMK 231 Query: 223 AIMGESGGATLGAVKAVRNQNQAGK--IAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 A+ G + +A +++ +A + + +FG D Q ++ + + + Sbjct: 232 AVAGINDAGCYALYQAWKSKGKADQDHVGIFGVDANEPALQAIKEGGMYRGTASSDPDSV 291 Query: 281 GNAVFAQTLKVI-NKQADGEKVIQVP 305 + L+V N + + + VP Sbjct: 292 TKNMIQNALEVSKNGKLETRDYLFVP 317 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 120/307 (39%), Gaps = 13/307 (4%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 MP + + + + + + R K++ + + + +++ A Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + T+AQG SK+ ++ L+AR VD I L+ G + + A A IP+ + Sbjct: 61 TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 + + +VS +L D + G+++G + + I + V + R Sbjct: 121 EAAGRPGEHFVS-FLGSDFIAQGRRVGE----WLAKATDGKASIVELTGTAGSSVAIDRA 175 Query: 180 KGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIS-TPDLNAIMGESGGATLGAVK 237 KGF + + P +I+A Q A+ V E +I + D+ A+ + LGA++ Sbjct: 176 KGFRNAIAT-YPNMKIIATQTADFSRAAAVRVMENIIQAKGSDITAVYAHNDEMALGAIQ 234 Query: 238 AVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 A+++ + V D + + ++ V S + G VFA + + Sbjct: 235 ALKSAGMKPGKDVMVGSIDGQKAALEAIIRGEL--GVSVESNPRFGPLVFATMEEYFAGK 292 Query: 296 ADGEKVI 302 ++I Sbjct: 293 KIPPRII 299 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 15/272 (5%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 +Q ++ +R+ ++D A V+VQ++ +AQ + SK+ + + + +I++ Sbjct: 48 SQPFFVAMRRELEDEAAKLGVKVQVL--DAQNNSSKQISDLQAAAVQGAKVVIVAPTDSK 105 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 + E G+ VI + I K ++ D + G+ A AD+ + Sbjct: 106 ALAGAADDLVEQGVAVISVDRNI---AGGKTAVPHVGADNVAGGR----AMADWVVKTYP 158 Query: 160 DQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIS 217 ++ VI N ++R KG + L + P +IV Q D+A++V + ++ S Sbjct: 159 AGARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQTANSKRDQALTVTQNILTS 218 Query: 218 TPDL--NAIMGESGGATLGAVKAVRNQNQ-AGKIAVFGSDMTTEIAQELENNQVLKAVVD 274 D + I+ + +GA++AVR + K+ V G D E ++ + + A V+ Sbjct: 219 MRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKVIGFDAIPEALARIKAGE-MVATVE 277 Query: 275 ISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 + Q + I A + V P+ Sbjct: 278 QNPGLQIRTALRQAVDKIKSGAALKSVSLKPV 309 >UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPB7_9CLOT Length = 363 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 9/268 (3%) Query: 32 TIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAI 91 +I I ++ + G + AAKD ++QL +N D KE+ V+T A+ V I Sbjct: 66 SIAGIVFQEDQFFKLMSAGYEAAAKDLGYEIQL--SNVTNDQMKETELVNTYTAQGVAGI 123 Query: 92 ILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAA 151 +S +S S ++ +S+ G+ + NT ++ + A D F K+ G A Sbjct: 124 AISPLSATISPEALKVSSDKGVKICVANTAMDSYP---FSIAAYTSDNYAFCKQTGEIAV 180 Query: 152 DYFIANKID-QPKIAVINCEAF--EVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAI 208 D+ D + ++ ++ + E +R GF L +IV+NQ+ + D AI Sbjct: 181 DFIKEKYGDEKIELGILQFKTQIPETSAERVNGFLAALDEGGVNYEIVSNQDAWLQDTAI 240 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE-NNQ 267 + ++ + PD++ + + G T+GAV AV N QAGK VFG+D + +I L+ +N Sbjct: 241 AKAGDMLAANPDIDIMFAANDGGTIGAVMAVENAGQAGKTFVFGTDASEQIVDLLKADND 300 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVINKQ 295 +L+AV ++G ++ I + Sbjct: 301 ILQAVTGQDPFQIGYKTVETLVQSIEGK 328 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 128/309 (41%), Gaps = 12/309 (3%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVR-QGVQDAAKDSSV 60 RT L A + A A+K + +G + + + + ++ AA+D+ + Sbjct: 3 KLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDAGI 62 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 +++ ++AQ + + + +A+ VD I S V E+G +R A A IPV+ + Sbjct: 63 ELKF--SDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 +N K YV+ ++ D +E G+K G + K D + + + R+K Sbjct: 121 AVNTKDTSLYVT-FMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQGTVGSAPAIDRKK 179 Query: 181 GFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIS-TPDLNAIMGESGGATLGAVKA 238 GFEEV+K+ P +I+ +Q G K V E + + +N + + +GA++A Sbjct: 180 GFEEVVKAD-PKFKIIRSQTGDFTRAKGKEVMEAFLKAEGRKINVLYAHNDDMAIGAIQA 238 Query: 239 VRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVV---DISGKKMGNAVFAQTLKVIN 293 + I + D + + ++ V + + M + K + Sbjct: 239 IEEAGLKPGKDITIISIDAVKGAFEAMMAGKLNVTVECSPLLGPQLMAAVKDIKAGKTVP 298 Query: 294 KQADGEKVI 302 K+ E+ I Sbjct: 299 KRIVTEEGI 307 >UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EI71_9FIRM Length = 357 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 17/292 (5%) Query: 25 RAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A+E IG I T +Y VRQG +DAA + + TN+ D + + V+ + Sbjct: 61 PASEATKVIGVIPKSTLFDFYKMVRQGAEDAAAEHGYTINYQGTNSSTDTATQQNIVEDM 120 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + +DA+++S++ + T+ IPVI ++ +N VS Sbjct: 121 MMSGIDALVISSIDAKAINDTMASL---DIPVITFDDEMNPSVCLTTVSVNH-------- 169 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEG 201 + A A Y D K+AV++ E +V QR +GFE LK + G ++V Sbjct: 170 EAAAAAGAAYIAEKLPDGGKVAVVSAEAGTDVIQQRDRGFENELK-KHDGFELVGVYHTE 228 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 +KA + + L+ PDL A+ + GA+ G K ++++ + I G D + E+ Sbjct: 229 GDREKAANTMQDLLSEHPDLVAVFCCNEGASAGVSKILKDEGRTD-ILAVGYDSSEELIN 287 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + + L A++ + +G ++ I+ ++D V + L Sbjct: 288 NIYDGS-LDALISQNPYGLGYNSVTAAIEAIDGKSDFPDVTESAYWLVDADN 338 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 111/276 (40%), Gaps = 13/276 (4%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 ++ V Q A + V + + + D+ K+ + ++ + + DAI++SA S + Sbjct: 59 NNPWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSD 118 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 G +++A EAGI ++ ++T I+ V + A++ GD + K G Y Sbjct: 119 GVIPAIKKAREAGIKIVNFDTRISDTSV---IDAFVGGDDVAGAYKAGK----YICEQLG 171 Query: 160 DQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIS 217 + ++A+I V R GF + PG ++VA Q DKA V ++ + Sbjct: 172 GEGEVAIITGLMEQSTGVDRHAGFMQACAE-YPGIKVVAEQGAEWSSDKAADVTTNILTA 230 Query: 218 TPDLNAIMGESGGATLGAVK-AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 P++ AI + +G V A +A + + G D + + L A V + Sbjct: 231 NPNVKAIFACNDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMTMDGD-LDAFVSLP 289 Query: 277 GKKMGNAVFAQTLK-VINKQADGEKVIQVPIDLYTK 311 G V+N ++ I L T Sbjct: 290 NLDEGAMGVKLATALVMNSDYHYDREILYDCTLVTG 325 >UniRef50_C0BXQ7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BXQ7_9CLOT Length = 320 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 146/318 (45%), Gaps = 22/318 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA---------EKEMTIGAIYLD-TQGYYAGVRQG 50 M ++ ++ ++ + T L + +K+ TI I + T ++ + +G Sbjct: 1 MKKRILSSVLMIALMTTLILGGCGTKSGDKKEDNTKDKKRTIACIVGNQTMDFFVNISKG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 QDAA + +++ + D +K+S + + + VDAI+ + + ++R+A + Sbjct: 61 AQDAAGEGD---EVLVYSFDDDANKQSQIFEDCITKKVDAILTTILDSEAIITSLRKAEQ 117 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA-VINC 169 AGIPVI + + KGV+ +A ++ D + G G A + + KI V Sbjct: 118 AGIPVITMDAYPDGKGVEDLYAAAVLDDLYQAGHDHGVALCEAI----GGKGKIGWVWYT 173 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGES 228 A EV QR +GF++ + P +IVA EG+ + +S + + DL+A Sbjct: 174 GASEVAKQRCEGFKDAVAE-YPDVEIVAYSEGSVDTESCLSQISAQLQNYSDLDAYWAPW 232 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 A + AV A+ + + + + SD ++ + + + +V+ A++D++ + +G Sbjct: 233 ANAGMAAVTALASAGMSD-VRLAISDCNEDLVKYVLDGKVI-ALMDLNARGIGEKAMELA 290 Query: 289 LKVINKQADGEKVIQVPI 306 + ++K E++ V + Sbjct: 291 CEYLDKGKVSEQINYVEV 308 >UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KK42_CLOPH Length = 320 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 126/315 (40%), Gaps = 11/315 (3%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSS 59 M T + +LL L+ + K+ + I T ++ V G AA + + Sbjct: 1 MNTFKKIVVWILLGVMLITLVSCSNKDNKKHYVAMITKSTKSAFWQSVFAGASAAATEYN 60 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + + + D ++ + + +A+I SAV N +++ + A++ G+ VI + Sbjct: 61 LSISYAGPELEEDYEYQNDLIYQAIEDGAEAVIFSAVDYNANAKAIEDAAKKGLKVIIID 120 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQR 178 + +N V+ + D G G AA +A+ ++ I ++N + QR Sbjct: 121 SDVNS----NQVTCRIGTDNYAAGCMAGEAA----LASSEEKIHIGIVNYDINSANGQQR 172 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 GF E++ IV + + A ++L+ P++N I + +LG A Sbjct: 173 EDGFREIVSKDSRVIDIVTINVVSTTEDARKGTKQLLEEHPEINVIATFNEWTSLGVGWA 232 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 +R+ N A + V D LE +V A++ + MG + ++I Q+ Sbjct: 233 IRDLNLADETTVVAFDSNVVSVGMLETGEV-DALIVQNPYAMGYLGVEKVAELIRGQSIE 291 Query: 299 EKVIQVPIDLYTKTE 313 + I L T+ Sbjct: 292 KGTIDTSTTLITRDN 306 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 60/335 (17%), Positives = 140/335 (41%), Gaps = 39/335 (11%) Query: 7 TTRNLLLMATLLGSALFARAA---------------------EKEMTIGAIYLDTQGYYA 45 + +L +A + + A A E + + Sbjct: 2 MKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFMV 61 Query: 46 GVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTV 105 G+ + ++ + + +VQL+ +A D +K+ + ++T ++ N +AI++ S +G + + Sbjct: 62 GMAENFKEVGEAAGYEVQLM--DADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGL 119 Query: 106 RRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA 165 + A +AGIPV + ++ + V++ + D ++ G + I + + KIA Sbjct: 120 KEAHDAGIPVFVIHNNVSATDL---VTSLIHVDV----RQGGELKMEQVIKDCGEDAKIA 172 Query: 166 VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAI 224 ++ + + G + + + P ++V G A + E + S +++AI Sbjct: 173 IMTGTLGQDTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLASGKEIDAI 232 Query: 225 MGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAV 284 + + G LG V +++ ++ +I V+G D T E + +++ ++ + S A Sbjct: 233 VCNNDGMALGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGEMAATIYVDS-----KAE 287 Query: 285 FAQTLKVINKQADGEKV---IQVPIDLYTKTEDGK 316 + +++ G+KV +VP L TK + Sbjct: 288 IEKAFEMLEDLKAGKKVDAEYKVPSVLVTKENVKE 322 >UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YA80_DICT6 Length = 338 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 14/295 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIE 66 + L+ + +L +F+ KE+ + I Y+A V GV+ AAKD V+ Sbjct: 1 MRKILVAILIILFPLIFSIGYSKEIHVAVIGKSVHPYWAEVELGVKQAAKDLGVKATFFV 60 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 + DI + + +++ +A VD I ++ + T+ +A GIPVI +T Q Sbjct: 61 PQKE-DIPAQISQMESFIAMGVDGIAIAPSDPTAIAPTIEKAMAKGIPVITLDTDAPQSK 119 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFEEV 185 Y+ D GK G D I K+A+ ++R +GF + Sbjct: 120 R----LVYIGTDNYSAGKIAGMVMNDLL---GIKGGKVAIGTGSLTAMNSLERIRGFMDG 172 Query: 186 LKSRVPGAQIV---ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + S +V A + +A+++ E+ +++ PDL G A KAV+ Sbjct: 173 IASN-KRIVVVTKPALCDFEDTGRAVTLAEQALLTYPDLRGFFGVYAFNGPAAAKAVKAA 231 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 + G++ + D T E Q ++ V+ A V MG K+ K D Sbjct: 232 GKVGQVLIVCFDTTAEHMQLIKEG-VISATVGQRPYMMGYKSVEVLTKMAQKGVD 285 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 116/323 (35%), Gaps = 33/323 (10%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIG-----------AIYLDTQGYYAGVRQ 49 M + L M L + +K G +I ++ Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 G + AK+ + L+ + QGD+ + + + + V + VDAI ++ + + + Sbjct: 61 GFEKQAKEYGWEATLL--DPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVN 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 EAG+PV C + + V + L D + K G A A+ + + + + +I Sbjct: 119 EAGVPVFCVDRR-----GEGEVVSTLETDNV----KAGEAMAEQLVKDYGEDVDVLIIQG 169 Query: 170 -EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL--DKAISVGEKLIISTPDLNAIMG 226 + + R +G + VL + IV + A++ + + + PDL+ I Sbjct: 170 VLSDTPTLDRTQGVKNVL-EKYENITIVGEPSAGEYSNEAALATTKNFLETNPDLDVIFT 228 Query: 227 ESGGATLGAVKAVRNQNQAGK------IAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + G V A++ + GK + ++ D E+ + +E+ V + Sbjct: 229 CTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTV-DGTFSQYPIQF 287 Query: 281 GNAVFAQTLKVINKQADGEKVIQ 303 G ++ EKV Sbjct: 288 GIDTVKSMKTYLDGGKVEEKVYY 310 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 73/324 (22%), Positives = 144/324 (44%), Gaps = 20/324 (6%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNA 69 L L+ +L + F+ + K +TIG Y ++ + + + + V + +A Sbjct: 18 LGLLPAILPACGFSESHHK-LTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYIN--AVSA 74 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI---NQKG 126 + D K+ + V+TL+ + +D +I++ S + + +R A++A IPV+ + + Sbjct: 75 EEDEQKQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQN 134 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVL 186 + A+L + +K G+ A+ +A + +A+ V R+ G E L Sbjct: 135 KNADYVAFLGPNN----EKAGSGIAEALMAGGGSK-FLALGGMPGNSVAQGRKAGLESAL 189 Query: 187 KSRVPGAQIVANQE-GTVLDKAISVGEKLIISTP--DLNAIMGESGGATLGAVKAVRNQN 243 + G ++V Q G DK ++ E ++ + P D NAI + GA+KAV N N Sbjct: 190 TAV--GHRLVQFQYAGDSEDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIKAVYNAN 247 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 + + G D+T + +EN L V + G A + I+ Q E++++ Sbjct: 248 REKEFIFGGMDLTPQAIAAIENG--LYTVSLGAHWLEGGFGLAILYRKIHGQDPAERMVK 305 Query: 304 VPIDLYTKTEDGKQWLATHVDGLP 327 + + K+ K + A ++D P Sbjct: 306 LDLLKVDKSNVAK-FKARYIDNTP 328 >UniRef50_A6M392 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Clostridium RepID=A6M392_CLOB8 Length = 341 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 135/329 (41%), Gaps = 21/329 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALF-------ARAAEKEMTIGAIYLDTQGYYAGVRQGVQD 53 M K+ + +L+ L A + K++ +DT Y++ +++ +D Sbjct: 1 MKKKIIALLSTVLIVGSLAGCGTKTQAGGTASTSGKKVIYFIPIVDTGAYWSPMKKAAED 60 Query: 54 AAKDSSVQVQLIETNAQGDI--SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEA 111 AK + + + K F+D + I ++ + + + V+ A++ Sbjct: 61 EAKALGYDLVVKTSPPNETQKNEKHIGFLDEAIKNKAAGIAIAPMDPDMFDKKVKEANDK 120 Query: 112 GIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA 171 GIPV+ ++ + K + ++Y+ D G++LG A I + KIA+ Sbjct: 121 GIPVVTFDADVKTK---ENRTSYIGTDNKLAGEQLGENGAKALKEKGITKGKIAMAAVNL 177 Query: 172 FEVCVQRRK-----GFEEVLKSRVPGAQ-IVANQEGTVLDKAISVGEKLIISTPDLNAIM 225 + + R+ GFE+V+ + + + Q+ ++ E I S D+ A+ Sbjct: 178 TQTTMTYRQDGIKSGFEKVMGADAKNFEWLEPIQDNDQSAESKRQLEGQITSNSDMVAVF 237 Query: 226 G-ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAV 284 S G G ++A+++Q ++G I FG D T + +N ++ +VD +G + Sbjct: 238 SLGSEGPDTGVMEAIKSQGKSGSIYHFGFDYTPTWENGVSSN-LISGIVDQDSYAIGKTI 296 Query: 285 FAQTLKVINKQADGEKVIQVPIDLYTKTE 313 K I + + V VP+ T + Sbjct: 297 IDTLDKKIKGE-KVDDVYPVPVKWVTPDK 324 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 55/332 (16%), Positives = 130/332 (39%), Gaps = 26/332 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGY-----YAGVRQGVQDAA 55 M K + R + + L + AA+ ++ I ++ G+ + + A Sbjct: 1 MKYKNKIMRLIAVFTMLFAFVGTSYAAKYKIGI-SVPSADHGWTAGLLWWANKAAADLKA 59 Query: 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 K+ ++ ++ +++ SK+ V+ L+ + +DA+++ + + + A + GI Sbjct: 60 KEKDIEFFVVASSSG---SKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYT 116 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVC 175 + + + + +++ G LG A + + + VI + Sbjct: 117 VVVDRELAHPAQNVFIAGDNAG--------LGRVGAQWLAKEMSGKGNVVVIEGLQIPIN 168 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLG 234 QR F +V+ P +I+ +Q G KA+SV E + P ++A+ + G Sbjct: 169 KQRVDAFNDVIAG-YPNIKILDSQPGDWSTQKALSVMENFLQKHPKIDAVWCQDDDMLKG 227 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENN-QVLKAVVDISGKKMGNAVFAQTLKVIN 293 +KA+ + V G + +I + +++ ++++A V S + + A + + Sbjct: 228 VLKAIEESGRTDIKTVLGGAGSKDIIEMIQSGNKMVRATVTYSPSMIAS-GIALAVHGVK 286 Query: 294 KQADG-----EKVIQVPIDLYTKTEDGKQWLA 320 + G + + DL TK + Sbjct: 287 HEKLGYLYHEPSRVILGADLVTKENAADYYFK 318 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 128/331 (38%), Gaps = 30/331 (9%) Query: 5 MRTTRNLLLMATL----LGSALFARAAEKE----MTIGAIYLDTQGYYAGVRQGVQDAAK 56 M LL+ A++ L + A AAEK + I T ++ +++G + AA Sbjct: 1 MHLWPRLLMAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAA 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 ++++ GD + T V++L+A I+++ + +A GI VI Sbjct: 61 RLGLELRSFAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVI 120 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAV--INCEAFEV 174 +T ++ G A D + GK +G AA AN K+A+ +N V Sbjct: 121 ALDTPLDPPGA---ADATFATDNVLAGKLVGEWAAKTLGAN-AKSAKVALLDLNVNQISV 176 Query: 175 CVQRRKGFEEVLKSRVPGAQIVANQEGT----------VLDKAISVGEKLIISTPDLNAI 224 V R +GF + V ++ +++ + + E L+ P ++ + Sbjct: 177 DVDRDQGFLKGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPYVSVV 236 Query: 225 MGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAV 284 + A GA +A+R+ + + V D + +++ V+ A M Sbjct: 237 YAINEPAAAGAYEALRSIGRDKDVLVVAVDGGCPGVRNVKDG-VIAATAMQFPLAMAQMG 295 Query: 285 FAQTLKVIN-----KQADGEKVIQVPIDLYT 310 LK K ADG+ + ++L T Sbjct: 296 VEAVLKYATDGTKPKPADGQDFVNTGVELVT 326 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 117/293 (39%), Gaps = 15/293 (5%) Query: 30 EMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 E I + + T Y+A +R G K V+V++ ++ D + E+ + TL + Sbjct: 19 EAKIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGY 78 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN---QKGVDKYVSAYLVGDPLEFGKK 145 + + V+ + ++ IP++ +T I+ K ++++ D L G++ Sbjct: 79 NCFGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQ 138 Query: 146 LGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-V 203 G + + ++A++ + + R+KGF E + + IVA Q Sbjct: 139 AGEG----LLKLMGGKGEVAILQGIAGEQNGINRQKGFTEKVAGK---LDIVATQPADYD 191 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 K +V E ++ + P + I + LGA +AVRN GK+++ D + + + Sbjct: 192 QAKGQTVTEAILKAHPKITGIFAANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAV 251 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + L + G + ++ K+ I PI L T K Sbjct: 252 KAGT-LSGTISQYPYAEGQLAVQACIDLVAKK-KVPSRIVAPIALIDSTNVDK 302 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 120/315 (38%), Gaps = 23/315 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA------EKEMTIGAIYLD-TQGYYAGVRQGVQD 53 M + L + A+ + + +G + ++ + + + Sbjct: 1 MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 A+ +V ++ + D K++ + +++ VDAII++ + ++ A+ A I Sbjct: 61 EAEKHGYEVIILSGD---DAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEI 117 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE 173 PV +T G V ++ D GK AA I + K+ +++ + + Sbjct: 118 PVFTADTGCTDPGAK--VVCNVMTDNFGGGK----LAAQAMIDVLPNGGKVLILDFKKAQ 171 Query: 174 VCVQRRKGFEEVLKSR---VPGAQIVANQE---GTVLDKAISVGEKLIISTPDLNAIMGE 227 C+ R GF+EV+ P +IV E + + E + +TPDL + Sbjct: 172 SCLLRVDGFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKGVFAI 231 Query: 228 SGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQ 287 + + LGAV A++ N+ + + G D + + ++ + ++G Q Sbjct: 232 NDLSALGAVVALKKANKLQDVKIIGFDGLRIGKEAILRGEIHADPI-QFPSEIGKLTVQQ 290 Query: 288 TLKVINKQADGEKVI 302 L N +++ Sbjct: 291 ILAYKNGDEVKPEIL 305 >UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DPH3_9BACL Length = 329 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 124/294 (42%), Gaps = 15/294 (5%) Query: 31 MTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVD 89 IG + T ++ + G Q AK V++ + S ++ +V+ +V+R+V+ Sbjct: 42 FVIGFVPGETTDPFFISMAYGAQQEAKKLGVKLIYEGA-STYSPSAQTPYVNAMVSRHVN 100 Query: 90 AIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNA 149 A+I+ +++A AGI V+ ++ I+ + +++ + D ++ G A Sbjct: 101 ALIVCPTDLTAMIPPIKQAVNAGIKVLTADSTISDASL---LTSRITSDN----EQGGAA 153 Query: 150 AADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAI 208 AAD+ + Q + V++ R GF +K + P ++V + +A Sbjct: 154 AADFLGSMAHGQGVVGVLDPSPGISTDKARVDGFIAEMKKKYPKIKVVIEYDNEQTTQAE 213 Query: 209 SVGEKLIIST-PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ 267 + + L++ L I G + GA + VR+ A + + G D Q+L+ Sbjct: 214 QLAQDLMLHYGKSLVGIFGTDDTSASGAAQGVRSSGSATHVNIVGYDAEPAEVQDLKEG- 272 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE--DGKQWL 319 ++ A++ G ++ + + K +Q+P + TK +QW+ Sbjct: 273 MISALIAQKPMIEGELAVEYAVEALEHK-SVPKFVQLPNVVITKANLAQNQQWI 325 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 113/301 (37%), Gaps = 16/301 (5%) Query: 19 GSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 + A I + T Y++ + G A ++ + + + + + ++ Sbjct: 34 AFSQSAGQNTSPARIVLVMKSPTNPYFSELANGASRAQLETGIDLSIKVAHEDDALEQQI 93 Query: 78 TFVDTLVAR-NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY---VSA 133 +D ++A+ DAI+++ + RA +AGI VI + + V Y V Sbjct: 94 RLIDEVIAKHQADAIVIAPTDSIRLVPVLARARKAGIHVINIGNRLEPRIVALYGMPVVP 153 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPG 192 + D ++ A K+A+I QR +G + G Sbjct: 154 LISIDNASAAYQV----AGKLAEGLPRGSKVAIIEGLLGTNNTRQRTEGALQAFSEA--G 207 Query: 193 AQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVF 251 ++VA Q D+A V +L+ PDL AI + LGA + +R + G + + Sbjct: 208 LRVVAKQSARWKGDEAYQVTAQLLRDYPDLRAIFCSNDMMALGAARYLREKGITG-VRLA 266 Query: 252 GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 G D TE L + + L A +D + G + I + E+ V +L T Sbjct: 267 GFDGITEARSAL-HQRQLVATIDQHASEQGYLAVRLAVDAIAGRPLAEE-TLVDTELLTA 324 Query: 312 T 312 T Sbjct: 325 T 325 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 116/296 (39%), Gaps = 17/296 (5%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGV--RQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 A A +K+ IG T + + + +AAK V+LI T+ + K+ V+ Sbjct: 28 AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKH--PDVELIITDGEDRTEKQVADVE 85 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 L+ + VDA+++S G + V++A +A IPV + + + ++ GD Sbjct: 86 NLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQ----YTQFVGGDNKL 141 Query: 142 FGKKLGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQ-IVANQ 199 G+ G A + Q I + + R GF E + PG + ++ Q Sbjct: 142 IGRAAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHE-FTDKEPGIKNLLDKQ 200 Query: 200 EGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT- 257 G D+A ++ + + ++ + G + GA A ++ + +I G D Sbjct: 201 SGDWKQDQAYNIMATALRNNEKIDLVYGHNDPMAYGAYLAAKDAGREKEIKFIGIDALPN 260 Query: 258 EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 E + N ++ + + G Q +K + + EK + + T+ Sbjct: 261 EGVTWVSNGELTATFLYATP---GAEGLRQAVKFLKGE-KVEKTVTLDTLKVTEEN 312 >UniRef50_C0CGP4 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CGP4_9FIRM Length = 313 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 123/272 (45%), Gaps = 13/272 (4%) Query: 45 AGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRT 104 + + + D A + + L+ + D+ + T ++ +A +VDA+I+ ++ N + Sbjct: 40 SDMGNAMLDKADELGIDATLMYY--EMDVQEMITGIENYMASDVDALIVHPMNANDGAEA 97 Query: 105 VRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP-- 162 +++A +AGI V+ ++T N Y + ++ E G K+G AA++ N + + Sbjct: 98 MQKAYDAGIQVLVFDTEPNC----DYSNCFMAS-NEELGYKIGEQAANWAKENLVSKGMT 152 Query: 163 -KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDL 221 I ++N + E +R G L+ +P +IV GT GE + + PD+ Sbjct: 153 PVIGLVNEPSSEFLTERETGIRNALEELLPEGEIVITGAGTTALAGQEAGENFLQAYPDM 212 Query: 222 NAIMGESGGATLGAVKAVRNQNQ--AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKK 279 N ++ + G +A + I +F D T + + + + K VVD+ K Sbjct: 213 NMVVSINDDTMHGVYEAFAQAGLTTSENIGLFSCDGTQKSKEYVAEGGIFKCVVDLELNK 272 Query: 280 MGNAVFAQTLK-VINKQADGEKVIQVPIDLYT 310 +G + K V+ + +D EK+ P++ T Sbjct: 273 VGENMVECAQKDVLGEDSDYEKINYFPMNPVT 304 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 114/294 (38%), Gaps = 19/294 (6%) Query: 26 AAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A ++TI + ++ R+G + AK+ V + + Q D + + ++ L+ Sbjct: 71 APGTKITIAMVPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQ-QADPALQVKIIEDLIR 129 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + V AI +S + + GI ++ ++ Y+ D GK Sbjct: 130 KKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQR----VMYIGTDNKAAGKT 185 Query: 146 LGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTV 203 +G A + K+ +I QR +GF+E + P Q+V Q Sbjct: 186 MGETMAKLL----NGRGKVGIITGGLGALNLNQRIEGFKEGVG---PNIQVVDVQATDDD 238 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN---QNQAGKIAVFGSDMTTEIA 260 L K +SV E ++ + PDLN I S + +++ Q++ GK+ + D E Sbjct: 239 LQKGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETK 298 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-KVIQVPIDLYTKTE 313 + ++ ++ A + +MG ++ +A K I + + TK Sbjct: 299 RAIQEG-IIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKEN 351 >UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83 Tax=Proteobacteria RepID=B2JDH5_BURP8 Length = 321 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 125/319 (39%), Gaps = 20/319 (6%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEM--TIGAIYLD-TQGYYAGVRQGVQDAAKDS 58 P +R L A +LG+ L A AA IG + + Y+ +++ + DAA Sbjct: 14 PRTLRLRATLAFAAVMLGTPLLAPAAADAAPLKIGMTFQELNNPYFVTMQKALNDAAA-- 71 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 S+ ++ T+A D+SK+ + V+ ++ + +D ++++ G V A +A Sbjct: 72 SIGATVVVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKKA-----GA 126 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 + V +++ + G+ A ++A+++ ++R Sbjct: 127 VVVAVDANANGPVDSFVGSKNFDAGQMSCEYLAKAI----GGSGEVAILDGIPVVPILER 182 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +G + L ++ P ++V Q G A+SV E +I + P+L I + G ++GA+ Sbjct: 183 VRGCKAAL-AKFPNVKVVDTQNGKQERATALSVTENMIQAHPNLKGIFSVNDGGSMGALS 241 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQEL-ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A+ + + I + D E + + N + L A Sbjct: 242 AIESSGK--DIKLTSVDGAPEAITAIQKPNSKFIETSAQFPRDQIRLAIGVALAK-KWGA 298 Query: 297 DGEKVIQVPIDLYTKTEDG 315 + K I V + L K Sbjct: 299 NVPKTIPVDVKLVDKDNAK 317 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 134/292 (45%), Gaps = 19/292 (6%) Query: 30 EMTIGA-IYLDTQGYYAGVRQGVQDAAKDSSVQVQ-LIETNAQGDISKESTFVDTLVARN 87 + TIG +Y + + + + AA+ + ++ ++ T + + K+ + V ++++R Sbjct: 46 KFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQISNVQSMISRR 105 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VDAII++ +S + S +++A+ AGIPVI + + +A + D + FG+ Sbjct: 106 VDAIIMTPISPSASVPVIQQANRAGIPVILVAGQADTRDT----AAEVRADDIVFGR--- 158 Query: 148 NAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEGTVLD 205 A++ + + KI V+N F R KG ++V R P ++VA+ Sbjct: 159 -TGAEWLVRELGGRGKIYVLNGLPGFSTDTLRWKGAKDVF-DRYPDIEVVADAHAAWDTA 216 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS--DMTTEIAQEL 263 +A + ++ + P+++ + + G TLGA++A R + + + G + ++ L Sbjct: 217 RAKTAVSNMLAAHPEVDGVWSQGGAMTLGAIQAFRAAGKPL-VPMTGENNNGLMKVWDSL 275 Query: 264 --ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 ++ ++ ++ +G+ QTL ++ + KV V T Sbjct: 276 NRAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGD-EVRKVNLVNPAPITSDN 326 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 21/295 (7%) Query: 31 MTIGAIYLD-TQGYYAGVRQGVQ---DAAKDSSVQV--QLIETNAQGDISKESTFVDTLV 84 + +GAI + ++ + G + KD+ V V ++ T + D + T D LV Sbjct: 73 LKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTDNLV 132 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 + +A++LS +S++ + +V A IP I N G+ ++ D + G Sbjct: 133 NQGYNALMLSPISDSNLTASVDNAKGKKIPTINVN-----DGLIASADYFVGPDAYQNG- 186 Query: 145 KLGNAAADYFIANKIDQPKIAV-INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 AA++ D+ +A+ I +R GF+ +K G +VA Q Sbjct: 187 ---ELAAEWVSKQLGDKGDVAIVIGMAKAFAARERTAGFKGWIKDNNSGLNVVAEQNADW 243 Query: 204 -LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 KA + I PDL AI + LG V+AV + I V G D E Sbjct: 244 DRQKAKELASTWIQQNPDLKAIFCNNDDMALGVVEAVEEAKK--DILVVGVDGIGEAYDS 301 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + + L A VD G M TL+V+ Q D +V P L KT K Sbjct: 302 IRAGK-LDATVDSFGYYMSQVATEVTLRVLAGQ-DIPRVTHTPQALIDKTNVDKD 354 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 126/320 (39%), Gaps = 26/320 (8%) Query: 5 MRTTRNLLLMATLLGSALFAR------AAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDS 58 M +LL A +L + + AA A+ + ++ VR G Q A + Sbjct: 1 MLRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANEL 60 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 + + ++ +A D ++ +D V+ V +++ + V + +E GIP I Sbjct: 61 GIDLTVL--DAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITV 115 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 + I V+A + + E G + A A I + E +R Sbjct: 116 DRTITGAD----VAALIDSNNTEGGAAAASVLAKAIRAQ---GEVIVLRGIEGSSSSAER 168 Query: 179 RKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +GF + + P +IVA + D A + L+ PD+ I E+ LGAV Sbjct: 169 YEGFTQAMAEH-PRVRIVAAEAADFDRDTARDLVTDLLADHPDVAGIFAENDEMALGAVD 227 Query: 238 AV-RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A+ + + V G D T E + ++ N+ L A + ++G Q K+++ +A Sbjct: 228 ALGERAGK--DVKVVGFDGTEEGVRAVK-NRKLVATIAQQSSELGATAIEQAGKLLDGEA 284 Query: 297 DGEKVIQVPIDLYTKTEDGK 316 + + P+ + T+ K Sbjct: 285 A--ESVHTPVMVVTRDNIEK 302 >UniRef50_Q1WVL1 D-ribose-binding protein n=2 Tax=Lactobacillus salivarius RepID=Q1WVL1_LACS1 Length = 330 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 122/289 (42%), Gaps = 16/289 (5%) Query: 8 TRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIE 66 L ++ + S+ + ++ + IG+ Y+ +Y + + V+ + L Sbjct: 22 IFLLGIILVVWISSFYMPFVKQPVKIGSTYMTLNNSFYKTINEEVKKQVSQNGD--ILYT 79 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENG--SSRTVRRASEAGIPVICYNTCINQ 124 + +SK+ + + + VD I+++ V+ ++ A + GI ++ ++ ++ Sbjct: 80 RDPGLSVSKQCQQIYDFIDKKVDVILINPVNGESKQIQHALKIAHDKGIKIVVVDSQLSN 139 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEE 184 +V+A +V D K G A Y + + Q KI V+ +R +GF Sbjct: 140 SS---FVNANVVSDNF----KAGVLDAKYMMKSSP-QAKILVLRHWNALSVKERYRGFVS 191 Query: 185 VLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRNQ 242 +K P QI N E D A+ ++L+ PD + IM + +GA+ A+ Sbjct: 192 EIKDN-PNYQITENLETLGQTDVALKNVQELLKVDPDKFDIIMAMDDQSAVGALAAMDAL 250 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 N KI V+G D +T + L +N +A V S K+G K+ Sbjct: 251 NLHNKIMVYGIDGSTNMKHLLLSNPNAQATVAQSPIKLGQKSIQVCYKL 299 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 11/294 (3%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQ 63 M T R L + + +A AA E TI I +T + + G + A + + V+ Sbjct: 1 MITKRMLGRLTIAMATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFI 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + +G++SK+ V+ ++ R V+AI ++ V G + + +A AGI V+ +T I+ Sbjct: 61 ELAAE-KGELSKQLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGIS 119 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 +++Y+ D ++ G+ A+ K I V + +R+KGF Sbjct: 120 GAK----ITSYVATDNIKAAMVQGDWTAEQI---KDGDTVIYVTGDQGQSTGQERKKGFL 172 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + L ++ ++V A + E + + P I G LGA A+ Sbjct: 173 DGLNAKRKNVKVVEVATTWDQTMAQNGVETALRANPTAKVIACAWDGGALGAKAALMAAG 232 Query: 244 -QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 +AG + + G D + ++ A K+G + + Sbjct: 233 KKAGDVKIAGFDGSPGGLDMMKQGW-QSANAAQMLAKIGQVGVETAIAAAEGKK 285 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 123/287 (42%), Gaps = 11/287 (3%) Query: 28 EKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 +MTI I + ++ V G Q AA V+ E ++ ++S++ + ++T ++ Sbjct: 41 SSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETAIST 100 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 N DAI+L+ + + RA ++GIPVI ++ N D YVS +L D G++ Sbjct: 101 NPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMAN---TDNYVS-FLGSDNYTIGQRS 156 Query: 147 GNAAADYFIANKID-QPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEG-TV 203 + A K+A I + ++ R GF + ++ P ++V+ ++ Sbjct: 157 ADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEAYPDIEVVSVRDAMGQ 216 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 + I++ L+ + PDL+ + + V+A+ Q + +A D + + L Sbjct: 217 VGNTINITLDLLTAYPDLDGLYANNQMTGDDMVRALDMQGRND-LAAVAVDASAQEIWGL 275 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 EN + +V MG A A + + K + I + T Sbjct: 276 ENGYLDSVLVQQ-PWVMGYAGVAYAV-MARNGVPLAKNVDTGILVIT 320 >UniRef50_Q0SII4 ABC ribose transporter, substrate-binding component n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SII4_RHOSR Length = 322 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 20/307 (6%) Query: 10 NLLLMATLLGSALFARAAEKE--MTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIE 66 L+ A + + A + TIG + ++ Q ++ AA + V+V + Sbjct: 23 TALIAAGTMTACTSGTGAGDDGTTTIGVTLNAASNPFFLAEGQAIETAAAEKRVEVSVQY 82 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 NA D++ +S +DT + + VD+II+ AV +G + RA++A IPV+ + + G Sbjct: 83 ANA--DVAVQSDQIDTFIRQKVDSIIVDAVDSDGIGPALLRATQANIPVVAVD--VTAIG 138 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVL 186 D V+ D ++ G++ A Y + K+A+++ A R +G E L Sbjct: 139 ADATVT----SDNVQAGRE----ACTYLVEQLGGSGKVAIVDGAAVSAISDRMQGCREAL 190 Query: 187 KSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA 245 + PG ++VA Q DKA++V ++ + PD++ G + +G A + + Sbjct: 191 DAH-PGIEVVATQRADLTRDKAMNVASTILTANPDVDGFFGVNDPTAIGISLAAQQKGVD 249 Query: 246 GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVP 305 K+ + +L + A ++G + +++ + +P Sbjct: 250 VKVVGV---DGAKQLTDLLGKSSIIATSGQDPAQLGRSGLDIAVRLAGGEKVDSAPTLIP 306 Query: 306 IDLYTKT 312 L T Sbjct: 307 TVLVTAD 313 >UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7 Tax=Burkholderia RepID=B2SY92_BURPP Length = 317 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 126/318 (39%), Gaps = 18/318 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS 59 + T R+T L +A L A + IG + + Y+ +++ + DAA S Sbjct: 11 LKTFARSTAALATLAFGLSFIAAPAAQAAPLKIGMTFQELNNPYFVTMQKALNDAAA--S 68 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + ++ T+A D+SK+ + V+ ++ + +D ++++ G V A +A Sbjct: 69 IGATVVVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKKA-----GVV 123 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR 179 + V +++ + G A +Y + ++A+++ ++R Sbjct: 124 VVAVDANANGPVDSFVGSKNYDAG----EMACEYLAKSIGGSGEVAILDGIPVVPILERV 179 Query: 180 KGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +G + L ++ PG ++V Q G A+SV E +I + P+L + + G ++GA+ A Sbjct: 180 RGCKAAL-AKAPGVKLVDTQNGKQERATALSVTENMIQAHPNLKGVFSVNDGGSMGALSA 238 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQEL-ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 + + + I + D E + + N L A+ Sbjct: 239 IESSGK--DIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIALAK-KWGAN 295 Query: 298 GEKVIQVPIDLYTKTEDG 315 K I V + + K+ Sbjct: 296 VPKTIPVDVKMIDKSNAK 313 >UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactobacillus RepID=C0XA52_9LACO Length = 320 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 115/293 (39%), Gaps = 14/293 (4%) Query: 27 AEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 + + G+ Y+ +Y + + + + D + L N + ++ + ++ + Sbjct: 30 GHRPIKFGSTYMTMNNDFYQTLNEPIANEIDDHND--ILYSRNPELSVNNQVNEINNFIK 87 Query: 86 RNVDAIILSAVS--ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 V I ++ V R +++A EAGI +I ++ + YV + + + G Sbjct: 88 NEVKVIFINPVDGTSTKLIRALKKAHEAGIKIIVVDSQLENSS--NYVDCTIRSNNYQAG 145 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 +K I ++ V R KGFE+ +K+ + Sbjct: 146 VLCAKELM-----SKQKSANILILQQPTAISVVDRIKGFEDTIKNNKNFHIVDKINTTGQ 200 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 + + +K + + + IM + +GA+ A+ N++ KIA++ D + I + L Sbjct: 201 SENSYPKVQKYLKQGKNFDTIMSLNDKTAVGALAAINANNKSSKIAIYSIDGSENIKKML 260 Query: 264 E-NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 N +KA V S ++G ++IN Q +K I +P+ L T Sbjct: 261 STQNANVKATVAQSPLQIGKVAIKVAYELINHQ-KVKKEIILPVKLITSKNIK 312 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 103/286 (36%), Gaps = 20/286 (6%) Query: 30 EMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 + TI I + T + GV G AA+D + L+ + V+ ++ V Sbjct: 58 DYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVRLVEDMIQSGV 117 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 DAI + V NG + +A +AGIPV+ T N + + + Sbjct: 118 DAICIHPVDSNGIVPALEKAWDAGIPVLVQGTQANTDKIYGWYGTKYADE--------AT 169 Query: 149 AAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDK 206 A+Y + + I + + V + P ++ Q G Sbjct: 170 LIAEYLAEKLDYKGNVVYITGPQQAQNAIDEINATHAVF-EKYPDLNLIEEQPGNFNRAT 228 Query: 207 AISVGEKLIIST--PDLNAIMGESGGATLGAVKAVRNQN-----QAGKIAVFGSDMTTEI 259 ++SV E LI D++ ++G + +GA+ A+ N + G I V G D + Sbjct: 229 SMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDGGIGVSGIDCNKDA 288 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVP 305 + ++ L V+ +G A + +N + + P Sbjct: 289 SYAMQEGT-LTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWP 333 >UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A1WNV9_VEREI Length = 374 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 137/328 (41%), Gaps = 26/328 (7%) Query: 4 KMRTTRNLL---LMATLLGSALFARAAEKEM--TIGAIYL-DTQGYYAGVRQGVQDAAKD 57 M ++ LL + A L + A A + M IG + T +Y V +G++ KD Sbjct: 28 NMNWSKTLLFIPVAAVTLAATFAAPAQARNMPRKIGYVTNYATHEWYQNVIKGMKAHGKD 87 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 ++V++ +A DI+K+ + +A+ VD +I++ V+E G +R+A A IPV+ Sbjct: 88 LGIEVEVQ--DANLDIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAANIPVVL 145 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ 177 + ++ + + G G A Y K+ + V Sbjct: 146 EGNPVKG------MTTMVAICDYDTGYFSGIEAGKYAKKKLGGTAKVMNVGLPLLSATVL 199 Query: 178 RRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 R KGF + +++ +PGA +V + + G D+A+ V + D+N I G + ++LG + Sbjct: 200 RSKGFMDGIRTVIPGATMVHDLDGGGNPDRALEVSSAALAKNADINIIYGINDSSSLGGL 259 Query: 237 KAVRNQNQA-GKIAVFGSDMTTEI-AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 +A + ++ + G+ +E + + +K G +K+ N+ Sbjct: 260 QAWKAAGKSQDNLLTVGTGGEGLAFINAIEKEPSYRIEAAMFPEKEGYTAIDAAVKLFNQ 319 Query: 295 QADGEKVIQVPIDLY--TKTEDGKQWLA 320 + +VP + T +G W Sbjct: 320 E-------KVPQHIVSPTAPMNGDDWKK 340 >UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NFD0_EUBSP Length = 367 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 6/276 (2%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 T ++ +++G +D A++ V + + T++ D + + ++ ++ ++ +AI +S ++E+ Sbjct: 88 TNSFWVTMQEGYEDTAEEYGVSIDVQATDSDTDTTGQLDILNNMLVKDYEAIAVSPLTED 147 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 + A++ + +I +N+ + K + G A Y I Sbjct: 148 CLISGIVAANQNDVKIITTGNEVNEDSL-KEAGGKIDAKITVDFYNQGVLGAQYIIDKTD 206 Query: 160 DQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIS 217 + K+AVI RR G +E + G ++VA ++ KA +I S Sbjct: 207 GKGKVAVIAGNEGATQSDARRDGAKETFEDA--GMEVVAVEQCDFDAQKAYDAAAAIIES 264 Query: 218 TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISG 277 PD+ I + LG V+A+ ++ ++AV G D T E +E A V +S Sbjct: 265 NPDIVGIACGNDDMALGVVRALEEKDVKDQVAVVGVDFTEEAKAAIEEGT-YDATVAMSP 323 Query: 278 KKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 MG LK + Q + P+ + T Sbjct: 324 YLMGKEAVIIMLKALEGQDVSKVGDSTPMAVVDSTN 359 >UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG89_9CLOT Length = 349 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 115/286 (40%), Gaps = 15/286 (5%) Query: 28 EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 +K+ G + ++ GV++ K + ++ + + D + + ++ +++ Sbjct: 63 KKQYKFGFTEMSAGSFFDACYSGVEEVVKANGDEI--VHVEGKADSAYQLGVIEDFISQG 120 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 D + + S+ V+ ++AGIP++ +++ ++ V+ ++V D G+ G Sbjct: 121 CDLVFYNPSDAAASAAAVKALNDAGIPIVNFDSAVSD---LSKVNCFVVSDSYSCGQIAG 177 Query: 148 NAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKA 207 I N + K+AV++ A R KGF + + + + G +K Sbjct: 178 EE----LIKNHPEGGKVAVLDFPASAAAADRAKGFVDTVTADGLFEVVAQMDAGAKPEKG 233 Query: 208 ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN-- 265 ++V + L+ + DL A+ + GA A+ KI ++ + E + Sbjct: 234 LTVMQDLLQAHSDLTAVFCINDECAQGAYSAITTAG--DKIEIYSVNAGPEAKAAMTKDG 291 Query: 266 -NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 + + K S +G K++N + E I++P T Sbjct: 292 VDGIWKCTAAQSPIGIGQKSAEVAYKILNGE-SYESEIKIPSFAVT 336 >UniRef50_C2DYY0 Periplasmic sugar-binding protein n=8 Tax=Lactobacillus jensenii RepID=C2DYY0_9LACO Length = 320 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 126/299 (42%), Gaps = 18/299 (6%) Query: 21 ALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 A+ ++ +K+ IG Y+ +Y + + V+ + + LI + D K+ Sbjct: 28 AVLTQSQKKQKIIGVSYMTMNNSFYQVLNEEVEKRVDARADK--LIIRDPALDAQKQVNQ 85 Query: 80 VDTLVARNVDAIILSAVSENG--SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG 137 ++ + + V AII++ V N + +A + I ++ ++ + K +V A L+ Sbjct: 86 INDFIKKGVSAIIINPVDGNNNKLIAILNKAHKKRIKIVVVDSQMADKA---HVDATLLS 142 Query: 138 DPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVA 197 D + G A K + I ++ + R +GF + L ++ +V Sbjct: 143 DNYQAGVLCAKALM-----KKKKRANILLLEHYSAMSANDRIRGFTDTLFNK--NYHVVG 195 Query: 198 NQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 + A K + + D + IM + A +GA+ A+ +Q + ++ V+ D + Sbjct: 196 KLNTLGQSEYAYPAVLKRLKTQADFDTIMALNDQAAVGAIAALDSQ-KVKQVGVYSVDGS 254 Query: 257 TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 + Q L NNQ A S K+MG F T ++ ++ K I++P+ L TK Sbjct: 255 ANMKQLLLNNQNATATAAQSPKEMGKLAFKLTYDLLAGKSVKSK-IKLPVHLITKDNIK 312 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 123/314 (39%), Gaps = 18/314 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 R L+ L GS A++ TIG Y + +G + A ++ +V Sbjct: 8 RRIVLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKV- 66 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 I + + D S +++ +D +A+ VD IIL+ + V++ ++AGIP++ + + Sbjct: 67 -IFADGKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQ 125 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGF 182 G A + D ++ G G + I V+ + R F Sbjct: 126 THGQPIKWEALVSWDMVKSGTIGGEQTVKAI----GGKGNIVVVEGTPGAGSTIDRGNAF 181 Query: 183 EEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTP--DLNAIMGESGGATLGAVKAV 239 EV++ + P +I+A K V E ++ +++AI + T G ++A+ Sbjct: 182 YEVIE-KYPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAI 240 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQV-LKAVVDISGKKMGNAVFAQTL-----KVIN 293 + + G+ + D E L ++ +A+ + + + + + N Sbjct: 241 KAAGRLGEFKIISVDGQKEAMDLLRAREIDYEAIFHPDDQAVAVRILCDIVNGRTPDLAN 300 Query: 294 KQADGEKVIQVPID 307 + +G K+ V + Sbjct: 301 QTYEGRKMDLVEFE 314 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 118/307 (38%), Gaps = 21/307 (6%) Query: 15 ATLLGSALFARAAEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDI 73 +A A K I + Y + + + QGV+D AK+ V+V ++ +A+GD Sbjct: 22 GCAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVL--DAKGDS 79 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 S + + + +A+ VD I+LS + V+ +AG V ++ I D V+ Sbjct: 80 STQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAAVAF 139 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPG 192 +K G A+ ++ + + + R KGF + +K + PG Sbjct: 140 D--------NEKAGKLGAEALAKLMGEKGTVLEYQGAKGAYHAILRGKGFNDGIK-QFPG 190 Query: 193 AQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ------AG 246 +++ D A+S+ + +N + + G V + N+ A Sbjct: 191 IKVIGRDAQWTADNALSLTVDNFTADSSINGLFSHNDEMVRGIVSGLSQINKDAPVGAAN 250 Query: 247 KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 I + G D T + N V A +D + +MG + +++ + K+ Sbjct: 251 HIPLVGVDGTPLALDRIRNG-VQDATMDQNPFEMGALALQAQVDLLDGK-QVPKMQLTDT 308 Query: 307 DLYTKTE 313 L TK Sbjct: 309 KLITKEN 315 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 129/305 (42%), Gaps = 18/305 (5%) Query: 15 ATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVR-QGVQDAAKDSSVQVQLIETNAQGDI 73 A+ +A A E+ +G + + + +Q A+ VQL+ + Q Sbjct: 30 ASSAEAAGRKPKALTEIVVGFSQTGAESSWRIAHSKSIQAEAEKR--HVQLLFADGQNVH 87 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 + + V+ + + VD I+++ G T++ A AGIPV+ + ++ + + Sbjct: 88 NNQVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAE--EDLYET 145 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPG 192 +V D + G++ G + + +I ++ A +V V R+ GF E + ++ P Sbjct: 146 VMVADFVWEGRRAGE----WLAKQTNGKARIIELVGTPAADVAVMRKTGFAEAI-AKHPD 200 Query: 193 AQIVANQEGT-VLDKAISVGEKLIISTP-DLNAIMGESGGATLGAVKAVRNQNQA--GKI 248 +I+A+Q G K +V E L+ + ++NA+ + LGA++A++ I Sbjct: 201 MKIIASQSGDFTRTKGKTVMETLLSAHKGEINAVYAHNDDMALGAIQAIQAAGLKPGQDI 260 Query: 249 AVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 V D + + + L A V+ + M + T+ I + K VP + Sbjct: 261 LVISIDAVKPAFEAMMEGK-LNATVECNP--MHGPLLFDTIDKIVRGEKVPKRTIVPGQI 317 Query: 309 YTKTE 313 + + + Sbjct: 318 FEREQ 322 >UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein precursor n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF79F Length = 333 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 133/310 (42%), Gaps = 21/310 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGA-IYLDTQGYYAGVRQGVQDAAKDSS 59 M T R+ N + +LG+ A A+ E IG IY + +R+ + + S Sbjct: 1 MKTMKRSLLNAFVYTLMLGAN--ASYAQSEPRIGVTIYKYDDNFMMLMRKEMNKEMANFS 58 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 ++ +AQ K+ ++TL+ V+ + ++ V N S V +A + +PV+ +N Sbjct: 59 -HLKWFMNDAQNSQVKQLKQIETLLKHQVNVLAVNIVHANESKTIVEKAKLSNVPVVFFN 117 Query: 120 TCINQKGVDKYVSAYLV-GDPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAF 172 + + ++ Y AY V DP E G+ G A + + NK + + ++ E Sbjct: 118 RSSDNQALESYDKAYFVSSDPKEAGRIQGELIAKVWKSNPDFDLNKDGKLQFVLLKGEPS 177 Query: 173 EVCVQRRKGFEEVLKSR-VPGAQIVANQEGTVLDKAISVGEKLIIST--PDLNAIMGESG 229 +V +R + E L + V +I ++ A + + ++ ++ ++ + Sbjct: 178 DVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWLVENRAAEIEVVISNND 237 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 +GA+ A+ + ++ +FG D E ++ ++ V++ S + + Sbjct: 238 EMAIGALDALNAHEK--RLPIFGIDALPETLALMKKGEIAGTVLNDSSAQ-----AKAVV 290 Query: 290 KVINKQADGE 299 K+++ A G+ Sbjct: 291 KLVSNLAQGK 300 >UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=B5WJX6_9BURK Length = 338 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 123/299 (41%), Gaps = 9/299 (3%) Query: 14 MATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDI 73 +A + ++ A A K+ Y+ V GV++ AK+ + +E ++ Sbjct: 25 LACVAMASQSALAQAKQTVAYIAPSLDISYWQWVAYGVRERAKELG--MNYVEFTSENSP 82 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 +K+ V T + R V AI++ VS + +R E +P+ D ++ Sbjct: 83 AKQMDNVKTALTRGVSAIVMGPVSSTSTPPVLRLLKEKSVPIAFAGIGPQAGQTD--YTS 140 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR-KGFEEVLKSRVPG 192 + + + GK G+ +A + KIA+++ V Q+ KG +E + Sbjct: 141 AVTANNYDTGKAQGSYVCK--LAKERGGNKIAMLSLPQDRVNAQKYMKGAKESFAADGCD 198 Query: 193 AQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252 V G +++A+S ++ + PD+ AI G A G+ KA++ + GK+AV Sbjct: 199 LVQVLETHGLTVNEAVSQANDILTAHPDVKAIYGMYDEAATGSAKALQTRGLTGKVAVVT 258 Query: 253 SDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 +D + + L + + + G Q ++K+ ++ + + L TK Sbjct: 259 ADGSPTTIKLLREGAI-QGIFLQEAVGQGIDATTQVSNALSKKPTTQE-LALKEPLVTK 315 >UniRef50_A8S1T0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1T0_9CLOT Length = 368 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 122/279 (43%), Gaps = 14/279 (5%) Query: 30 EMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 ++ I I Y++ + G + AA+D V+ L + Q +++ +D+L+ + V Sbjct: 66 KVKIAFIPQLIGIPYFSAMESGGKKAAEDLGVEF-LYTGSTQASAAEQVKIMDSLIKQGV 124 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 +AI LS + + ++ +++A EAGI V ++ D YV+ K LG Sbjct: 125 NAISLSVLDSSSTNPYIKKAQEAGIKVYTSDSDAPDSTRDFYVAQ-------ALDKDLGT 177 Query: 149 AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF-EEVLKSRVPGAQIVAN--QEGTVLD 205 D K+ +++ E+ + + ++ + + P +IV +G + Sbjct: 178 TLMDCLGEQMGGSGKVGIVSGESTATNLNTWIDYIKQRQEEKYPDIEIVDIRYTQGGSSE 237 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 +A+ ++L+ PDL ++ + G +AV+ + +AG++AV G + +E+ Sbjct: 238 QALKQAQELMTRYPDLKGLVAVASSTIPGVAQAVQQEGKAGEVAVIGYGSPATVKPFIES 297 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 V+K V + +G K+ + + E Q+ Sbjct: 298 G-VMKQSVLWNAYDLGYLTVW-AGKMAAEGKEFEATNQI 334 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 116/296 (39%), Gaps = 14/296 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A +K + + +Y + QG + AA + V++ + + + ++ + +D Sbjct: 30 ATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDEQ 89 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY---VSAYLVGDPL 140 +A +DA++++ + RA+E G+ ++ + I+ + + ++ D Sbjct: 90 LAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDNE 149 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 G + G A+ K +I + +RR G L+ ++VA++ Sbjct: 150 FGGYEAGKILAELA----GPDAKALIIEGPRSAINARERRDGARRALQEN--NIEVVASE 203 Query: 200 -EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 L+ A ++ + + P+LN I + LGA+ + + G D + Sbjct: 204 VASWKLESAYALTQNVHARNPELNVIFAANDMMALGALLYAQEHGLNDW-LIAGFDNIPD 262 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 + + L +D + G A + ++N +A + V+ V + T ++ Sbjct: 263 ARAAVREGR-LAVTIDQQADRQGYQGVATAVDLLNDKA-VDDVVLVKTRVITADDN 316 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 122/316 (38%), Gaps = 9/316 (2%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M + L L + A AA + + + Y+A +G Q A + Sbjct: 1 MNLRKSILSCLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAADGL 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 +V + TN D ++++T V+ +A+ D I+L V + ++R+ +A IP++ N+ Sbjct: 61 KVDVKVTN--YDANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNS 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK-IDQPKIAVINCE-AFEVCVQR 178 +QK +Y + + + G+ A F D+ K+ VIN VQR Sbjct: 119 MPDQK-YSRYWKVFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQR 177 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +GF + LK PG ++V Q KA + L D+ + E+ G V Sbjct: 178 YQGFVDGLKKNAPGIEVVGAQPADWDAVKAEAAASALFTQFKDVKGVYTENDSQLRGVVT 237 Query: 238 AVRNQNQ-AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A + K+ + G + + + A V+ S G L++ + Sbjct: 238 AAQRLGLEPSKLVIVGHGCDAGGVEAISAGKAY-ATVEQSPFDDGAYAAKAALELATGKT 296 Query: 297 DGEKVIQVPIDLYTKT 312 V +P + TK Sbjct: 297 P-RAVQYLPNPIATKA 311 >UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BFJ9_STRRD Length = 345 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 101/256 (39%), Gaps = 8/256 (3%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 I ++ + G + + D ++V ++ +I ++ V+ ++R VD ++++ Sbjct: 54 IIKASDSSFWQTMIAGAKQSGGDFGLKVSTFGPTSETNIDQQVQLVENSISRGVDGLVIA 113 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 S + + + RA +AG+ VI ++ + ++ D L+ G + G + Sbjct: 114 PNSSSALNSAIERARKAGLKVITVDSRVTTASE-----GFIGTDNLKAGMQAGKRMCELL 168 Query: 155 IANKIDQPKIAV-INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGE 212 A + + + + V R GF++ L + P ++ + ++ A S Sbjct: 169 KAQNKTSGSVMIESSVAGIQSLVDRDSGFKQGLANNCPQVKVTLQRYNNNDINTAASQVN 228 Query: 213 KLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAV 272 + + +L + ++ + +GA +A+++ N + V D + L + A+ Sbjct: 229 DALTANRELAGVFADNNTSGVGAARAIQDNNVTDTVPVVAFDSDPQENAALAAGTI-DAL 287 Query: 273 VDISGKKMGNAVFAQT 288 V + G Sbjct: 288 VVQNPYFFGYQGVLAA 303 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 124/315 (39%), Gaps = 21/315 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ L S+ A+A +++ + + +++ AAK+ V +Q+ Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVF-STPNLAMPFEVHMQRTAVKAAKELGVNLQV 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + ++QG K+ ++ + R ++S N S V +A +PV+ + + Sbjct: 60 L--DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKT 117 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 + + + G+ +G D+ A + I ++ ++R +G Sbjct: 118 DKK----VPHFGANNYKGGQAIG----DFVKARFPNGADIVLLTGQPGSSSNIERTQGIR 169 Query: 184 EVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRN 241 + LK+ ++VA+Q G + + + E ++ S P I+ + LGA++A+++ Sbjct: 170 DSLKAGGSKYRLVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQS 229 Query: 242 QN-QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 Q + G++ V G D E + + L A D G AV ++ N Sbjct: 230 QGLKPGEVMVTGFDAVPEALARVRDGW-LAATADQRP---GYAVTQAMTQLTNNIRTKSA 285 Query: 301 VI--QVPIDLYTKTE 313 + P + TK Sbjct: 286 ITGADYPPTMITKDN 300 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 113/303 (37%), Gaps = 10/303 (3%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 L+ + +LG + + +G I D+ Y+ +R+ Q A Q+ + Sbjct: 16 LMAGSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAF 75 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 GD + T ++ +V + V I+++ S G +++A +AG+ VI +T + + Sbjct: 76 DGDNEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDA-- 133 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKS 188 V A D G G P++ +++ V R GF E Sbjct: 134 -VDATFATDNKAAGVAQGKWVKAAL---GNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGL 189 Query: 189 RVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 +IV + KA + E L+ P +NA+ + A GA +A++ +A + Sbjct: 190 TDNSPEIVGQENTNGDQTKAQTAMENLLQRAPGVNALYTINEPAAAGAYQAIQAVGRADQ 249 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPID 307 + + D + +++ ++ A V KM +K + Sbjct: 250 VTIGSIDGSCTGVADVKAGKI-GATVMQFPAKMAELGVQAVVKFAEDGTKPSGFNDTGSE 308 Query: 308 LYT 310 L T Sbjct: 309 LIT 311 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 111/298 (37%), Gaps = 26/298 (8%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAG-----VRQGVQDAAKDS 58 + LLL+ T+L A + +G + G + ++ A D Sbjct: 1 MKKVLIFLLLIVTILSFA--------KFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDP 52 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 V+ L+ + S++ V L+A+ +DA++++ + +A GI I Sbjct: 53 DVEFYLVTA---KEPSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIV 109 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 + IN + + Y+ GD +G G Y + + VI + +R Sbjct: 110 DRGINSEE----YNVYIAGDNYMYGYLAGK----YIAEKLGGKGNVVVIEGIPSTINTER 161 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 + F++ L+ P +I+A Q G +KA + + L+ P+++A+ G + Sbjct: 162 VEAFKKALEP-YPNVKIIAQQPGYWSREKAFEIMQTLLTKFPNIDAVWTGDDDMLHGVLL 220 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 A++ + I + G I + + + L V M + + + + Sbjct: 221 ALKQAGRDKNIVLVGGACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGE 278 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 119/294 (40%), Gaps = 17/294 (5%) Query: 37 YLDTQGYYAGVRQGVQDAA---KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIIL 93 Y + A + Q A K V + TN+ DI+K+ + + L+ + VD I++ Sbjct: 56 YSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDINKQISDMQDLITKKVDGIVI 115 Query: 94 SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADY 153 +A S + V A+EAGI V+ ++ ++ A + D EFG+ AD+ Sbjct: 116 TAASPTALAPAVEEATEAGIKVVSFDNVVDTDEQ----VATVGIDQTEFGR----VCADW 167 Query: 154 FIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVG 211 + + KI V+N R G EEV K + P +I+ + + + + Sbjct: 168 LVKKLDGKGKIVVLNGIAGTANDTMRWNGAEEVFK-QYPDIEILGSANASWDYAQGKAAM 226 Query: 212 EKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN-NQVLK 270 E ++ + P+++ + + G T GA+ A + + + + +EN + L Sbjct: 227 ESMLSAYPEIDGVWSQGGAMTQGAIDAFIAAGRKL-VPMTSEGNNGALRAWIENRDNGLS 285 Query: 271 AVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVD 324 + G +K ++ + + K + + I + T+ K + D Sbjct: 286 CIAPSDPTYSGAEALRTVIKSLDGE-EVPKRVTLDIPVVTEDNVDKYYRQDMPD 338 >UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HFZ1_GLUDA Length = 330 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 117/309 (37%), Gaps = 18/309 (5%) Query: 20 SALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKEST 78 S ARA + IG ++ +G+ AK + +A DI K+++ Sbjct: 32 STAAARAEDSVHKIGVTVGSLGNPFFIAAIRGITQQAKALGPTAPVQSVSADYDIGKQAS 91 Query: 79 FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGD 138 VD+ +A D ++ +AV ++ VRR ++G V+ ++ + G D ++ V Sbjct: 92 QVDSFIAAGNDLVMFNAVDYQAAAPLVRRLHDSGATVVAFD--VGAPGADATITTNNV-- 147 Query: 139 PLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVAN 198 K G + Y + + ++N R KG + V ++ PG +++++ Sbjct: 148 ------KAGEISCQYIVDRLHGHGDVVIVNGPPVTALSDRVKGCQSVF-AKAPGIRLLSS 200 Query: 199 --QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 D ++VG+ +++ ++AI + LG A R + + D + Sbjct: 201 TLDAKGSRDGGLAVGQSVMVRFDKVDAIFAVNDPTALGVELAARQAGRHD-FFLASVDGS 259 Query: 257 TEIAQELENN-QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 ++ QE+ ++ A + + + V + L T G Sbjct: 260 PDVEQEMRGGNTLIAATASQDPFAIATTATRIGFDIRAGRIKPGIVRLLAPSLITHDTIG 319 Query: 316 --KQWLATH 322 K W A H Sbjct: 320 GYKGWNAPH 328 >UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7J1_ABIDE Length = 360 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 125/307 (40%), Gaps = 16/307 (5%) Query: 19 GSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKEST 78 G+ A A +E + + ++ ++ G+++ A V+V + N + D+ + Sbjct: 58 GTGSTASVAGEEKYAIVLKTQSSQFWQDMKAGIEEEAAKLGVKVDVQSGNTEDDVEGQVQ 117 Query: 79 FVDTLVARN-VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVS---AY 134 ++ V+ AI ++ +S+ + + GI I + I+ K + + AY Sbjct: 118 VLENFVSTGEYKAIGVAPISDVNLNNAIAEGCSKGIVFIDIDEKIDAKALGELGGGLYAY 177 Query: 135 LVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQ 194 + D K++G A + + ++A+I +A + ++R+ + Sbjct: 178 VATDN----KEVGETGAGELLKQVGNNAEVAIIEGKAGALSGEQRRDGAKAAFEAAGAKL 233 Query: 195 IVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 + + KA+ V +I + P+L AI + +GAV+AV+ + I V G+D Sbjct: 234 VDSQPADWDRTKAMDVATNMISANPNLKAIYCCNDTMAMGAVEAVKKSGK--DIKVCGTD 291 Query: 255 MTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPID-----LY 309 + + + + + L A V + K +G +K + + A E +V L Sbjct: 292 GNDDAIKAVADGE-LAATVAQNPKLVGATALNLMVKAVKENAKPEAGAEVTQTGIAAVLI 350 Query: 310 TKTEDGK 316 TK + Sbjct: 351 TKDNAKE 357 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 125/316 (39%), Gaps = 23/316 (7%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 +M+ +L+ L + K+ IG + + + + V Sbjct: 2 QMKQWLYILIFTLLFSACSDNNV--KKYVIGVSQCSEDIWRDKLNNELVMSTYQHD-NVT 58 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L +A + + ++ + V+ +I+S + S + +A +AGIPVI ++ + Sbjct: 59 LKFASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTD 118 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGF 182 K +A++ D E G ++GN + IA + +A ++R +GF Sbjct: 119 SKK----YTAFIGADNYEAGYEIGNFIGQQL----DGKGNIAEICGLQASSPAIERNRGF 170 Query: 183 EEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLI-ISTPDLNAIMGESGGATLGAVKAVR 240 + LK G +++A + G + + + + ++ + + + ++ LGA+++++ Sbjct: 171 MDALKD-YSGIKVIARKHGDWVKESGVMAMDSVLSQAKEPIQYVFAQNDRMALGALQSIK 229 Query: 241 NQNQAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 G I + G D + + + + + + G++V L ++ K+ Sbjct: 230 KHKVKG-IRIVGIDALPVPGGGMENVRDGNLEASYIY---PTRGDSVMQLALNILEKK-P 284 Query: 298 GEKVIQVPIDLYTKTE 313 ++ + L TK Sbjct: 285 YKRDNYLKGALVTKAN 300 >UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG6_9FIRM Length = 331 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 113/299 (37%), Gaps = 18/299 (6%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 A A G + + +Y +R G++ AK+ ++ I T+A+ D + + V Sbjct: 45 ADAGSGSHKCGFVVGSFEHVFYQTIRDGIESKAKELGMEA--IVTDAELDPNIATNKVQD 102 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L A+ +AI LS G + A G+ + ++ + + ++ ++ D + Sbjct: 103 LTAQGCEAIALSCNDAAGVKPAIENADAEGVAMFTFDCSTDSEA----INCFVGTDNYKG 158 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 G+ G Y D + +I C+ R+ G +VLK + N Sbjct: 159 GQLGGQELLKY----SEDGDTVGIICYPTASSCLDRQNGALDVLKDE-DRTVVYDNDYQG 213 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 +KA + E ++ + PD+ A+ A GA+ A++ KI G D E + Sbjct: 214 DANKAQEIMENMLTANPDMAAVFCVGDPAATGALAAIKAAGSDCKI--IGFDGNPEAKEA 271 Query: 263 LENNQVLKAV----VDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + + + + + +G + Q K +++ I + + + + Sbjct: 272 ISDTEGNGKWWVSEIAQNPTLIGETIVEQMQKYLDEGKVDAAEIPIDPYVIDASNVADE 330 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 123/311 (39%), Gaps = 18/311 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M T R +L LL L A AAE ++ A + V+D Q+ Sbjct: 1 MNTIR--MLRVLLLAFCLPAVAAENKVIAFAQDTMANDFRRAQVYEVRDEVARY-PQLSF 57 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + ++AQG S ++ + + VD ++L E V +A +AGIPVI + IN Sbjct: 58 VYSDAQGQTSLLIRQIEQFIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGING 117 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 K ++++ D + ++G A+Y + + + + + +V R KGF Sbjct: 118 KQ----FTSFINSDNI----RIGEIGAEYIASRLNGKGLVLLFEGLQKADVTQLRSKGFL 169 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + + G +++ + A+ EKL+ ++AI ES G + N Sbjct: 170 TEI-GKHSGIRVIRRTGNYLRKDAVVEMEKLVSDGIRVDAIFSESDSMLSGVRMVLSKSN 228 Query: 244 Q-AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI 302 + + G D T+E Q + + +V+ G G LK+ + K I Sbjct: 229 IDPRSVVMVGCDYTSEARQAIRDGTQSGSVLFPLG---GKKAVEIALKIFAGE-SVPKHI 284 Query: 303 QVPIDLYTKTE 313 P+ L TK Sbjct: 285 YNPVKLVTKDN 295 >UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderiales RepID=Q221W3_RHOFD Length = 331 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 122/311 (39%), Gaps = 17/311 (5%) Query: 11 LLLMATLLGSALFARAAE-KEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 LL + L + A A + K++ I I ++ G + AA VQ Q + Sbjct: 28 LLAIPLTLAVQMNATAKDVKDLRIAVIPKVAVPFFDDCNNGAKAAADKLGVQYQWVVPQ- 86 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 S + ++ L+++ VD I +S +++A +GI V+ +++ G Sbjct: 87 NTQGSTQVRILEDLISKKVDGIAISVNEPKSVEAAIKKAVASGIKVVTFDSDSANSGRSM 146 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKS 188 Y+ G+ +G + A + ++A++ + +R G ++ L S Sbjct: 147 YIGTI----NSAAGETMGESMAKAI----DGEGEVAILTGQLGAANLNERITGIKKSL-S 197 Query: 189 RVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGES--GGATLGAVKAVRNQN-Q 244 + P ++VA + L KA+S E L P L I G S GG + V A + + Sbjct: 198 KYPKIKVVATEGTEDDLAKAVSTTESLFRGHPALKGIFGVSQVGGPAVSKVMATKEFGSK 257 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 G + VF D + + ++ + + ++ MG + I + K + Sbjct: 258 KGAVKVFAFDDLPDTVKGVKEGYI-QGIMVQRPVTMGKLAVEHLVDQITGKEPAPKDVDT 316 Query: 305 PIDLYTKTEDG 315 +++ T G Sbjct: 317 GVNVVTSQNLG 327 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 114/281 (40%), Gaps = 16/281 (5%) Query: 29 KEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 + IG L +T Y ++D A+ + LI T+AQ + +K+ + V+ L+A+N Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFK--LIVTDAQDNTAKQVSDVEDLIAQN 144 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 +D +ILS G ++ A E +PVI + + YV+ Y+ D + G+ G Sbjct: 145 IDLLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVT-YIATDFVWEGQAAG 203 Query: 148 NAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LD 205 + I + R GF V+ G +I+A+Q G Sbjct: 204 E----WLKDKTGGTCNIIELTGTVGSSSAQDRATGFAGVVDQN-EGMKIIASQTGNFERS 258 Query: 206 KAISVGEKLIIST-PDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQE 262 + V E L+ + +++A+ + LGAV+A++ I V G D + + Sbjct: 259 EGQKVMENLLQAHGGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKS 318 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 + ++ VV G F K++ Q E+ I Sbjct: 319 VIAGEMSATVVSSPMY--GPITFDTVEKILAGQEVPEQTIM 357 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 147/336 (43%), Gaps = 32/336 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEK----------------EMTIGAIYLD-TQGY 43 M ++++T LL++ ++L A + + ++T+GA D T + Sbjct: 16 MSKRLKSTAILLVIVSMLVCACSSGGGKADTEKTEKKTEDSGNKDKITVGATLSDFTISF 75 Query: 44 YAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR 103 A + + DA K+ ++ I + D + + ++T + + VDAI+++AV + Sbjct: 76 QAAMYNELLDAQKEYD-NIEFILQDGASDSALQVNQIETFITQGVDAILINAV-SDAVEP 133 Query: 104 TVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK 163 ++++A EAGIPV N I + Y ++ + G+++ N D +++D Sbjct: 134 SLKKAMEAGIPVFAVNRSITDENAYSY---FIGANDTLSGEQMANCLLDMIEKDQMDSCN 190 Query: 164 IAVINCE-AFEVCVQRRKGFEEVLKSRV--PGAQIVANQEGT-VLDKAISVGEKLIISTP 219 I I R+ GF+ ++ + G I+ + IS + ++ P Sbjct: 191 ILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILERIPCKHDKETVISSIQNMLNKYP 250 Query: 220 --DLNAIMGESGGATLGAVKAVRNQNQAGKI-AVFGSDMTTEIAQELENNQVLKAVVDIS 276 +++AI+ E +GA++AV++ + + + G DM TE+ ++ ++ V+ Sbjct: 251 AGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIVGMDMPTEVWDAIKAGKIYGTVLQDP 310 Query: 277 GKK--MGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 ++ +G +K + EK I+ + + T Sbjct: 311 AEQCEVGIKTIETYF-FGDKDSLKEKFIETDLPMVT 345 >UniRef50_B5K960 ABC transporter, periplasmic sugar binding protein n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K960_9RHOB Length = 254 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 112/234 (47%), Gaps = 16/234 (6%) Query: 56 KDSSVQVQLI-ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 V++++I + Q D++ ++ ++T + R D I ++ + + + + A +AG+ Sbjct: 2 AKRGVEIEMIWDQPPQADVADQNRRIETNIGRQPDGIAVACLDRVTNVQLMNEAVKAGVH 61 Query: 115 VICYNTCINQKGVDKYVSAYLVGDP-LEFGKKLGNAAADYFIANKIDQPKIAVINCE-AF 172 VI +N+ + ++ ++ G LG Y + IA+++ Sbjct: 62 VINFNSFCDD------AFPFVGPKSSVQDGYDLGE----YLAEELGGEGTIAILSGSLTA 111 Query: 173 EVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGGA 231 V+R +GF++ L S+ P +IV Q + +LD+AI++ E ++ + PD++ I G + Sbjct: 112 SDHVERIEGFKDAL-SQHPEMEIVFEQPDNDILDQAITLTENMLQAHPDIDGIFGSNASN 170 Query: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVF 285 +GA +AV+N +AG+I + G D E + + V+ A+ MG Sbjct: 171 PIGAARAVQNAGKAGEIVIVGMDDLPEAVDFVCSG-VISALKAQRQWDMGYWTI 223 >UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FY95_ACICJ Length = 329 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 110/268 (41%), Gaps = 13/268 (4%) Query: 32 TIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 TI + + T +Y ++ G AK + + ++ + + L+A++ A Sbjct: 37 TIALVPGIATDPFYITMQHGAAAEAKKLGLHLIWQGGSS-FSPETQIPALQALLAKHPAA 95 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 ++++ +E +R+ AGIPVI +T I+ + K + + + ++ G A Sbjct: 96 LLVAPTNEKALINPIRQFIAAGIPVISVDTTISDTAILK---SRITSNNVQGGASAARAI 152 Query: 151 ADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAI 208 A + + +AVIN R+KGF +K G ++VA + + KA Sbjct: 153 AGFAH----GKGDVAVINVKPGISTTDARQKGFLAQMK-HYKGMKVVAIEYDDDSPTKAF 207 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 + + L++ P L I + + G KAV + GK+ V G D + L+ V Sbjct: 208 TEAQLLLLKYPHLKGIFATNVFSGEGVGKAVVAAGKKGKVDVVGYDAEPGEVKLLKQG-V 266 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINKQA 296 + ++ + G ++ ++ Sbjct: 267 ISTLIVQRPAEEGRLGVKYAYDILTGKS 294 >UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F3L8_THELT Length = 321 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 125/321 (38%), Gaps = 17/321 (5%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSS--VQVQ 63 + LL++A + + A I + T ++ G ++A D V+V Sbjct: 1 MRKFLLVLAMVFTLSALVFGA---YEIAFVVKATDSDFWQYTIVGAKNAEHDLQGLVKVT 57 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + ++ DI K+ ++ ++ DAI++S+ S + ++ + +A + GI +I + + Sbjct: 58 VYGPPSEADIDKQVAILEDVIRTKPDAIVISSTSSHATAPALNKAYQQGIKIILIDNFVY 117 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIA-NKIDQPKIAVI-NCEAFEVCVQRRKG 181 G ++L + G + + + K+ +I + +V + R G Sbjct: 118 DTG----YHSFLATNNKVGGGLAAEKVVELLKKSGRPLKGKVGLISSMAGVQVLIDRDDG 173 Query: 182 FEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAV 239 F LK P +I+ + + KA + E LI + D L AI ++ G + + Sbjct: 174 FTARLKELAPDLEILPTRYVDNDIAKAAAAAEDLITAYGDQLVAIFADNNHTGDGVARVI 233 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 QN K+ D + + L N LKA++ MG IN + Sbjct: 234 EEQNLQDKVIAVAYDSDPQEVEALRNGS-LKALIVQDPHGMGYKGVMFAFMAINGET-LP 291 Query: 300 KVIQVPIDLYTKTE-DGKQWL 319 + + TK D QW+ Sbjct: 292 SYFDTGVYVVTKENMDNLQWV 312 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 120/298 (40%), Gaps = 18/298 (6%) Query: 29 KEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 K IG + + Y A V +Q K+ Q +L+ + Q + + + + V+ + + Sbjct: 48 KSYVIGFSQANFKEPYRAHVDHELQRLVKNY-PQFKLVIADGQANDNTQVSQVENFLTQQ 106 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VD + +SA + V + GIPVI + + + ++++ GD + G Sbjct: 107 VDILFVSAFEAAPLTPAVSAVYDKGIPVIELDR----RTTGEKFTSFVSGDNRAIAHEAG 162 Query: 148 NAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLD 205 AA D +A++ + ++R +GF+ + + P +I+A Q + D Sbjct: 163 LYAASLL----PDGGDVAILEGLPSSSPAIERLEGFKAGISTN-PKVKIIAVQPVDWMQD 217 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT---EIAQE 262 KA+ V ++ + PD+ + + A GA AV+ + G++ + G+D + Sbjct: 218 KAVEVFSAMLQAHPDIKLVYTSNDLAAAGAYIAVKQAGKLGQVKIIGTDGLPGPSGGIRA 277 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 + Q V A+ +I+ + +++ VP + + + Sbjct: 278 VAEGQWTATYV--YPTGAAEALDLAKKILIDCASSVPRLVTVPTQRIDASNAKELYAK 333 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77269 ABC transporter periplasmic-binding protein yphF... 283 6e-75 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 270 6e-71 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 264 3e-69 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 261 2e-68 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 257 3e-67 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 255 2e-66 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 255 2e-66 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 253 5e-66 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 253 6e-66 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 252 1e-65 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 251 2e-65 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 250 4e-65 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 250 5e-65 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 250 7e-65 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 249 1e-64 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 248 2e-64 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 247 3e-64 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 247 5e-64 UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding... 246 6e-64 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 246 1e-63 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 245 1e-63 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 245 1e-63 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 243 5e-63 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 243 6e-63 UniRef50_A0QZE7 ABC transporter periplasmic-binding protein YphF... 241 2e-62 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 241 3e-62 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 241 3e-62 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 240 4e-62 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 240 5e-62 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 240 6e-62 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 240 7e-62 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 240 7e-62 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 240 7e-62 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 239 8e-62 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 239 1e-61 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 239 1e-61 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 238 2e-61 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 236 7e-61 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 236 9e-61 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 236 9e-61 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 236 1e-60 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 235 2e-60 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 235 2e-60 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 235 2e-60 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 235 2e-60 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 235 2e-60 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 235 2e-60 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 234 3e-60 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 234 3e-60 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 234 4e-60 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 234 4e-60 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 233 5e-60 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 233 8e-60 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 233 9e-60 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 233 9e-60 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 233 1e-59 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 232 1e-59 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 232 1e-59 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 232 1e-59 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 231 2e-59 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 231 3e-59 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 230 4e-59 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 230 4e-59 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 230 6e-59 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 229 7e-59 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette tran... 228 2e-58 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 228 2e-58 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 228 3e-58 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 227 3e-58 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 227 4e-58 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 227 5e-58 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 226 6e-58 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 226 8e-58 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 226 8e-58 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 226 8e-58 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 226 9e-58 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 226 1e-57 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 225 1e-57 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 225 2e-57 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 224 2e-57 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 224 3e-57 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 224 4e-57 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 224 4e-57 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 223 5e-57 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 223 7e-57 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 223 7e-57 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 223 8e-57 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 223 9e-57 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 223 1e-56 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 222 1e-56 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 222 1e-56 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 222 2e-56 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 222 2e-56 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 221 2e-56 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 221 2e-56 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 221 3e-56 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 221 3e-56 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 221 4e-56 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 220 4e-56 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 220 5e-56 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 219 7e-56 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 219 7e-56 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 219 8e-56 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 219 8e-56 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 219 9e-56 UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra... 219 9e-56 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 218 2e-55 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 218 2e-55 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 217 4e-55 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 217 4e-55 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 217 4e-55 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 217 4e-55 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 217 5e-55 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 217 5e-55 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 217 6e-55 UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional... 216 6e-55 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 216 7e-55 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 216 7e-55 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 216 7e-55 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 216 9e-55 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 216 9e-55 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 216 1e-54 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 215 1e-54 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 215 2e-54 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 215 2e-54 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 215 2e-54 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 214 2e-54 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 214 3e-54 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 214 4e-54 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 214 4e-54 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 214 4e-54 UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional... 214 4e-54 UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional... 214 5e-54 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 213 5e-54 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 213 6e-54 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 213 6e-54 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 213 6e-54 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 213 7e-54 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 213 7e-54 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 213 7e-54 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 213 1e-53 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 212 2e-53 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 211 2e-53 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 211 2e-53 UniRef50_A9KMR5 Putative solute-binding component of ABC transpo... 211 2e-53 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 211 2e-53 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 211 3e-53 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 211 3e-53 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 211 3e-53 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 211 3e-53 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 211 4e-53 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 211 4e-53 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 211 4e-53 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 210 4e-53 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 210 6e-53 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 210 6e-53 UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostri... 210 7e-53 UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional... 209 8e-53 UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 209 1e-52 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 209 1e-52 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 209 1e-52 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 209 1e-52 UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 208 2e-52 UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 208 2e-52 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 208 3e-52 UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding... 207 5e-52 UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium ... 207 5e-52 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 207 5e-52 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 207 6e-52 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 206 6e-52 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 206 6e-52 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 206 9e-52 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 206 9e-52 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 206 1e-51 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 205 2e-51 UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter... 205 2e-51 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 205 2e-51 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 205 2e-51 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 204 3e-51 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 204 3e-51 UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding prot... 204 3e-51 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 204 3e-51 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 204 3e-51 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 204 3e-51 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 204 3e-51 UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostri... 204 3e-51 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 204 4e-51 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 204 4e-51 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 204 4e-51 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 204 4e-51 UniRef50_C2L0C0 Ribose ABC superfamily ATP binding cassette tran... 204 4e-51 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 203 6e-51 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 203 6e-51 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 203 7e-51 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 203 7e-51 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 203 7e-51 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 203 7e-51 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 203 9e-51 UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di... 203 9e-51 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 203 9e-51 UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional... 203 1e-50 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 202 1e-50 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 202 1e-50 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 202 1e-50 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 202 1e-50 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 202 2e-50 UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=... 202 2e-50 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 202 2e-50 UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostri... 201 2e-50 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 201 2e-50 UniRef50_C1XTQ0 Monosaccharide ABC transporter substrate-binding... 201 2e-50 UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional... 201 2e-50 UniRef50_UPI0001973330 periplasmic binding protein/LacI transcri... 201 2e-50 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 201 2e-50 UniRef50_A3DI69 ABC-type sugar transport system periplasmic comp... 201 2e-50 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 201 2e-50 UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1... 201 3e-50 UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional... 201 3e-50 UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostri... 201 3e-50 UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic com... 201 3e-50 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 201 3e-50 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 201 4e-50 UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia... 201 4e-50 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 201 4e-50 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 201 4e-50 UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactob... 200 4e-50 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 200 5e-50 UniRef50_C9A2C8 Periplasmic ribose-binding protein n=1 Tax=Enter... 200 6e-50 UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional... 200 6e-50 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 200 6e-50 UniRef50_C0Z4C9 Putative ABC transporter substrate binding prote... 200 7e-50 UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerot... 200 7e-50 UniRef50_C0C5Z0 Putative uncharacterized protein n=1 Tax=Clostri... 199 8e-50 UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=... 199 8e-50 UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional... 199 9e-50 Sequences not found previously or not previously below threshold: UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 202 1e-50 >UniRef50_P77269 ABC transporter periplasmic-binding protein yphF n=58 Tax=Bacteria RepID=YPHF_ECOLI Length = 327 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 327/327 (100%), Positives = 327/327 (100%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV Sbjct: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT Sbjct: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK Sbjct: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR Sbjct: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK Sbjct: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 Query: 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327 VIQVPIDLYTKTEDGKQWLATHVDGLP Sbjct: 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 141/333 (42%), Gaps = 39/333 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEK-------------------EMTIGAIYLD-T 40 M R LLL ++ K +M IG Sbjct: 1 MQKTRRLLSVLLLAIFMITGCSIEGQNNKEESKESGVEEKASETKTDGDMKIGVSLSTLN 60 Query: 41 QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 ++ +R+GV++AA V+ + T+AQ D S ++ V+ L+ + VD I+++ V Sbjct: 61 NPFFVSIREGVEEAAGKE--NVETVITDAQNDSSTQNNQVEDLITQGVDLIVINPVDSTA 118 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 + +V +A+EA IPVIC + +Q + +++ + +E GK G Y + + Sbjct: 119 IATSVEKANEANIPVICVDRGSDQGEL----VSFIASNNVEGGKLAGE----YILEKVGE 170 Query: 161 QPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIST 218 ++ + +R +GFEE + ++A+Q + ++V E L+ + Sbjct: 171 NAEVIQLEGIPGASSTRERGEGFEEATNGK---INLLASQTANFDRAEGMTVMENLLQAH 227 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK 278 PD+ A+ ++ LGA +A++ + + + G D + + +E L A V K Sbjct: 228 PDVKAVFCQNDEMALGASEAIKASGK--DVTIVGFDGNEDAIKAVEEGN-LSATVAQKPK 284 Query: 279 KMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 +MG +K + + E+ + P++L K Sbjct: 285 EMGKLAIETAIKYLKGEE-VEETVDSPLELIKK 316 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 134/302 (44%), Gaps = 14/302 (4%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS-VQVQLIETNAQGDISKESTFVDT 82 ++EK+ I I +D ++ V+ G + AK+ VQ+ + D +++ ++ Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + + DAI+++ + + V +A +AGIPVI ++ + +++ D + Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDK----YVSFVATDNI-- 156 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 K AAD + KIA+I+ + R GF++ LK + P QI+ Q Sbjct: 157 --KAAEMAADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYS 214 Query: 202 -TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 ++A++ ++ + PDL G + G+T+G A++ ++ AGK+ V G D++ Sbjct: 215 MGDKNRALNQALDILTAHPDLAGFYGTNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATI 274 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 ++ N + +A + + MG + + + K + + + TK + Sbjct: 275 NAIKENYI-QASMVQNPYMMGYKGVEIAVDKLQGKE-VPKRVDTGVTVMTKDNVDEVVKE 332 Query: 321 TH 322 + Sbjct: 333 YY 334 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 261 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 136/328 (41%), Gaps = 31/328 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA--------------RAAEKEMTIGAIYLD-TQGYYA 45 M ++ A +L + A+ K + +G ++ Sbjct: 1 MKRWTAMLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFV 60 Query: 46 GVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTV 105 + GVQ+ AK VQV ++ N D + + V+ L+ ++V+AIIL+ S V Sbjct: 61 AMSNGVQEEAKKLGVQVTIL--NGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAV 118 Query: 106 RRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA 165 +A+ A IPVI + + + V+ ++ + +E GK AD I + ++ Sbjct: 119 EQANRAHIPVITLDRSVTKGN----VACFIASNSVEAGKMA----ADELIKALGGKGQVV 170 Query: 166 VINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNA 223 + R KGF+E + + PG ++VA Q +A++V + ++ + P++ Sbjct: 171 ELQGVIGTSAEADREKGFDEEI-GKAPGIRVVARQTANFDRSQALNVMQNILQAHPNIQG 229 Query: 224 IMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNA 283 + ++ LGA+KA++ + I + G D E ++ +L A + + G Sbjct: 230 VFAQNDEMALGALKAIQEAGKHN-IKIVGIDGEKEAVNDVHKG-LLYADIAQQPVQEGIL 287 Query: 284 VFAQTLKVINKQADGEKVIQVPIDLYTK 311 +K++ + K + P+ L K Sbjct: 288 GVEYAVKLVEGEK-VPKQVNSPLHLVEK 314 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 133/322 (41%), Gaps = 12/322 (3%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS 59 M + L+ + + + L + + + + ++ + + + A+ Sbjct: 4 MKKSLFVVLVLVGLLLVSFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLG 63 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + + ++Q D +KES D ++A DAII + +GS V+RA EAGIPV C + Sbjct: 64 YEATIF--DSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVD 121 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKI---AVINCEAFEVCV 176 IN +G+ A + D G +G + D +I ++ + + Sbjct: 122 RGINARGL---AVAQIYSDNYYGGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 178 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 R GF V+ + P ++VA Q D A V E+++ + P++ AI + LGA Sbjct: 179 DRSNGFHSVV-DQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGA 237 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 +KA + I +FG D ++ ++ + + A + K M + + + Sbjct: 238 MKACEAAGRTD-IYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGE 296 Query: 296 ADGEKVIQVPIDLYTKTEDGKQ 317 +++ V ++L T+ K Sbjct: 297 RSFPEIVPVTVELVTRENIDKY 318 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 133/330 (40%), Gaps = 22/330 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMT--------IGAIYLDTQ-GYYAGVRQGV 51 M K L L +A++ + + Y+ V+ G Sbjct: 1 MKGKRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGA 60 Query: 52 QDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEA 111 DAAK+ V+VQ++ NA+ D+ +++ ++ + + VDA++++ + N + T +A + Sbjct: 61 NDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKE 120 Query: 112 GIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA 171 IPV+ +T N +++ + GK G + I + Sbjct: 121 KIPVVLIDTDANWDKKK----SFVGTGNIAAGKLGGEYISKKLKK---GDEAIIIRGVPG 173 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGG 230 +R +G ++ L++ G ++V Q +KAISV E L+ + P++ + + Sbjct: 174 DRTQDERTQGAQKALEAA--GIKVVEIQPANSEREKAISVMENLLQTHPNIKGVFCTNDE 231 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 LGAVKA++ + I++ G D + + + ++ L V + +G +K Sbjct: 232 MALGAVKALQQAGKKNIISI-GVDGSPDALKSIKEGG-LTGTVAQNSYDIGKKGVETAVK 289 Query: 291 VINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 V+ + E I L K +Q Sbjct: 290 VLRGEK-VETRIDTGTTLVDKQNVNEQEAK 318 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 130/323 (40%), Gaps = 18/323 (5%) Query: 6 RTTRNLLLMATLLGSALF-------ARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKD 57 R + L+ +ATLL A A EKE+ I T ++ V+ G + A ++ Sbjct: 110 RRSFCLVSVATLLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEE 169 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 ++ + + D ++ V + VD I+L+ + + R V+ AS AG+PV+ Sbjct: 170 IGAKITFRGPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVI 229 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ 177 +++ +N D +Y+ D E GK G A A+ D I + + E Q Sbjct: 230 FDSGLNTDPGD--FVSYVATDNFEGGKLAGEAMANALGEKGGD--VILLRYEQGSESTHQ 285 Query: 178 RRKGFEEVLKSRVPGAQIV--ANQEGTVLDKAISVGEKLIISTPD-LNAIMGESGGATLG 234 R +GF + +++ GT + AI + L+ D + I G Sbjct: 286 REEGFLYSIAE-YSNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTVCEPTAEG 344 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 A++A+R + AGK+ + D + + + L +V A+V MG + Sbjct: 345 ALRALRERKLAGKVKLVTFDSSDSLRESLSAGEV-NAIVLQDPVAMGYQAVKTMAAHLRG 403 Query: 295 QADGEKVIQVPIDLYTKTEDGKQ 317 + E+ I + + T + Sbjct: 404 ETP-EQFIDTGVFVATAKNQDDE 425 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 131/303 (43%), Gaps = 12/303 (3%) Query: 20 SALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 +A + ++ IGA D + Q + + V++I +A D SK+ + Sbjct: 46 TAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQ 105 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V+ + + VDAI+L V + V +A++A IP++ N + +AY+ + Sbjct: 106 VENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDK---ATAYVGSES 162 Query: 140 LEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVAN 198 ++ G A + KIA++N + E ++R +G ++V+K + P ++V Sbjct: 163 IKAGIMQMEEVAKLL----NGKGKIAIMNGQMGHEAQIKRTEGNKQVIK-KYPDMKVVLE 217 Query: 199 QEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT 257 K +S+ E + S ++A++ + +GA+ A+ ++ + + V G D T Sbjct: 218 GTAEWDRAKGMSLMENWLQSGKKIDAVVCNNDEMAIGAIMALEDEGKLDDVIVAGVDATP 277 Query: 258 EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + + ++ + LK V + K G +K + EK +P +L TK + Sbjct: 278 DALEYVKEGK-LKVTVFQNAKGQGQLGLEVAIKAAKGEK-VEKFNWIPYELVTKDNVEEY 335 Query: 318 WLA 320 Sbjct: 336 IKK 338 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 144/338 (42%), Gaps = 31/338 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE------------MTIGAIYLD-TQGYYAGV 47 M + +LL L+GSA+ KE +T+G + ++ G+ Sbjct: 1 MKKTKK-ILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGM 59 Query: 48 RQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRR 107 +GV+D + + LIETNA GDI+K+ + ++ L+ + VD +I++A+ + V++ Sbjct: 60 EKGVKDKTSEIGCK--LIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKK 117 Query: 108 ASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI 167 A EA IP+I + N + + + +L D ++ G++ ++ + I Sbjct: 118 AKEANIPIIFLDRGANSEDM----TTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEI 173 Query: 168 NC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIM 225 + R KGF V+ + +IVA Q G +K+++V + ++ + P ++A+ Sbjct: 174 EGLQGTSAARDRGKGFHNVM-DKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPKIDAVF 232 Query: 226 GESGGATLGAVKAV------RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKK 279 G + T+GA KA+ + I V G D + + ++ + + Sbjct: 233 GHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNI-DVSISQDPIG 291 Query: 280 MGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 MG LK I + EK I TK + Sbjct: 292 MGVQAVEVGLKAIKGE-QVEKHIYTKFFPITKDNATDE 328 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 132/288 (45%), Gaps = 14/288 (4%) Query: 29 KEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 +++ +G +Y + +G+Q+ A V+ LI + GD++ ++ V+ + + Sbjct: 58 EQIVVGFSNWSRSFEFYVDLEKGMQEVADAQGVK--LITQDPNGDLAAQTKQVEDFITQG 115 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VD I+L + N + ++AGIP++ + + V++++ D G+ Sbjct: 116 VDGIVLCPIDSNAAVTEAETINQAGIPLVTTDIAVAGGD----VASHIASDNTLGGQLA- 170 Query: 148 NAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDK 206 A + K+A+IN ++R GF + + + P +IVA Q G +K Sbjct: 171 ---AQFIGEQLGGTGKVALINNPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREK 227 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 +SV E ++ S PD+ + + LGA++AV+ + I + G D T E + ++ Sbjct: 228 GLSVMENILQSNPDVQGVFAVNDMMGLGALQAVQAAQR-DDIVIVGFDATEEAVKYIKEG 286 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 LKA V + ++G LKVI + EK I VP++L T Sbjct: 287 SALKASVAQNPVELGKTTMETMLKVIAGE-QVEKNIPVPVELVTAGNA 333 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 66/325 (20%), Positives = 133/325 (40%), Gaps = 24/325 (7%) Query: 4 KMRTTRNLLLMATLLGS----------ALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQ 52 + L++ A +L A + + ++ I + ++ V G + Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 53 DAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAG 112 A ++ V+V I + +I K+ V+ + + V A+ ++A+ + + ++A +A Sbjct: 61 KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120 Query: 113 IPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EA 171 IPV+ +++ + S+++ D G G A + K+A+++ Sbjct: 121 IPVVTFDSNVKGD----ITSSFIATDNKVAGAMAGEQLAKLI----NGKGKVAIVSHNPG 172 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGG 230 ++R GF E L + P +I+ Q KA+++ +I + PD+ I G + Sbjct: 173 TTTAIEREAGFREALA-KYPDIKILNTQFSDGDKSKALAITLDIINANPDIAGIYGTNEP 231 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 + G K V + GK+ + G D + ++A+ LE V+ +V MG Q K Sbjct: 232 SIFGIAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKG-VISGLVIQDPYNMGYQTVQQLYK 290 Query: 291 VINKQADGEKVIQVPIDLYTKTEDG 315 + + EK I L TK Sbjct: 291 LSKGEK-VEKRIDTGAILVTKENIN 314 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 133/320 (41%), Gaps = 30/320 (9%) Query: 5 MRTTRNLLLMATLLGSALFA----------RAAEKEMTIGAIYLDT-QGYYAGVRQGVQD 53 M+ T + LL + + + ++ IG ++ ++ GV Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 AK ++V ++ +AQ D +K++ V+ L+ + VDA++++ + S V+ A+ GI Sbjct: 61 EAKKQGIEVIVV--DAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGI 118 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAF 172 PV+ + V + D ++ G+ AD+ + K+A + Sbjct: 119 PVVTLDRSAENGK----VETLVASDNVKGGQMA----ADFIVEQLGKGAKVAELEGVPGA 170 Query: 173 EVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGA 231 +R GF + + ++A Q K ++V E L+ PD+ A+ + Sbjct: 171 SATRERGSGFHKTADDK---LNVIAKQTADFDRTKGLNVMENLLQGNPDIQAVFAHNDEM 227 Query: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 LGA++A+R+ + +I V G D + + ++ + A + + +G + Sbjct: 228 ALGAIEAIRSSGK--EILVVGFDGNEDAVKAVQAGD-MSATIAQQPELIGKLAVQAARDI 284 Query: 292 INKQADGEKVIQVPIDLYTK 311 +N + EK I P+ L TK Sbjct: 285 LNGKK-VEKTIPAPLKLETK 303 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 13/289 (4%) Query: 25 RAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A ++TIGA L +Y ++Q ++ AA D+ V++ + A D++K+ + V+ Sbjct: 23 FALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSI--ANQDLNKQISDVEDF 80 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + R VDAI+LS V G + +A AGIPVI + V A++ D G Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEG----VEVDAHVATDNYYGG 136 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 + G A + ++A+I+ + R GF+E + S+ PG +IVA Q G Sbjct: 137 RIAGETMAKVL----NGKGQVAIIDYPVVQSVRDRVAGFKEAV-SKYPGIEIVAIQPGIT 191 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 +A++ + ++ + P+++ I G A L +V AV++ + V G D E + Sbjct: 192 RPEALNTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAV 251 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 + + AVV +MG L+VI + EK I V L+TK Sbjct: 252 KKEESFVAVVCQYPGEMGRLGLETALRVIKGEK-VEKEIPVLPGLFTKE 299 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 131/321 (40%), Gaps = 27/321 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA-------RAAEKEMTIGAIYLD-TQGYYAGVRQGVQ 52 M + L L S +KE TIG ++ +++G++ Sbjct: 1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60 Query: 53 DAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAG 112 AK ++V ++ +AQ D SK+++ V+ L+ + VDA++++ + S V A+ G Sbjct: 61 KEAKKRGMKVIIV--DAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVG 118 Query: 113 IPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EA 171 +PV+ + Q V + D ++ G+ AD K+A + Sbjct: 119 VPVVTIDRSAEQGK----VETLVASDNVKGGEMAAAFIAD----KLGKGAKVAELEGVPG 170 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGG 230 +R GF + + Q+V Q K ++V E L+ PD+ A+ + Sbjct: 171 ASATRERGSGFHNIADQK---LQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVFAHNDE 227 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 LGA++A+ + + I V G D + +++ + L A V + +G Sbjct: 228 MALGALEAINSSGK--DILVIGFDGNKDALASIKD-RKLSATVAQQPELIGKLATEAADD 284 Query: 291 VINKQADGEKVIQVPIDLYTK 311 +++ + +K I P+ L T+ Sbjct: 285 ILHGKK-VQKTISAPLKLETQ 304 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 129/323 (39%), Gaps = 21/323 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA--AEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKD 57 M ++ R L ATL+ A+ A A+ ++ IG + + +G + A + Sbjct: 1 MTSRRHFLRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAE 60 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 V LI T+ D SK+ V++L+A+ + +++S ++E + V+ A +AGI V+ Sbjct: 61 HYPDVDLIVTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVT 120 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCV 176 + +N V+ ++ G+ L G G A + I + + Sbjct: 121 LDRKVNTP-----VTVHVGGENLPLGVGAGEFLA----KKLNGKGNIIELQGTAGASATI 171 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIST--PDLNAIMGESGGATL 233 R KGF E + + P ++VA+Q DKA+ E ++ + A+ + L Sbjct: 172 DRNKGFAEAIA-KHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMAL 230 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 GA++ + + ++AV G D + ++ ++ V + KV Sbjct: 231 GAIQVLEAAGRLNEVAVVGIDGQETAFEAVKQGKLAATFVYPF---VAPEGIETAYKVAK 287 Query: 294 KQADGEKVIQVPIDLYTKTEDGK 316 + + I +P T Sbjct: 288 GEE-VPETITLPTVSVTPDNIAD 309 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 141/336 (41%), Gaps = 37/336 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFAR-----------------AAEKEMTIGAIYLD-TQG 42 M ++ + ++AT L A A K++ +G + Sbjct: 1 MKQSLKRFLMVAVVATAALFTLTACGGTGLSSKSDSNTKVTKKAPKDLKVGVSLSTLSNP 60 Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 ++ VR G+QD AK + + + ++AQ D +K+++ ++ L+ + VD +I++ V + + Sbjct: 61 FFVSVRNGIQDLAKKN--KTNVQVSDAQNDTAKQNSNIEDLIQKKVDVLIINPVDSSAIT 118 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 V+ A++AGIPVI + + V + + + G+ A Y I Sbjct: 119 PAVKDANDAGIPVITVDRSSDGGK----VLTLVASNSTKGGQMA----AKYMIEKLGKDA 170 Query: 163 KIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPD 220 KIA + +R KGF+ K + IV+ Q K ++V E ++ D Sbjct: 171 KIAELQGIPGASATRERGKGFDGAAKGK---LDIVSKQTAGFDRAKGLTVTENILQGNGD 227 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + I ++ LGAV+AV+ + KI + G D + + ++ + A V ++M Sbjct: 228 IVGIFSQNDEMALGAVQAVKAAGK--KITIVGFDGEADGIKAVKAGD-MAATVAQKPEEM 284 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 G N + +K ++ P+ L T + K Sbjct: 285 GRLALQAAYDHFNGKT-VKKNVESPLSLVTTEDANK 319 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 125/298 (41%), Gaps = 16/298 (5%) Query: 21 ALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 A + K+ IG T ++ V+ GVQ AA + +++ + T+AQ D + + Sbjct: 56 AGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYI--TDAQDDPTIQMKD 113 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V+ L+ + DAII+ + ++ +EAGIPV + N V +++ D Sbjct: 114 VENLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGE----VISHIGYDA 169 Query: 140 LEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVAN 198 ++ G+ G D + KI I V R +GF EV+K P +IVA Sbjct: 170 IKSGRMAGQYLVDTL----GGKGKIVEIQGIMGTNVAQNRSQGFNEVMKDN-PDMEIVAC 224 Query: 199 QEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT 257 Q K +SV E ++ + P+++ + + LGA++A+ + +I G D Sbjct: 225 QVADFDRAKGMSVMENILQANPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCDAID 284 Query: 258 EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 + ++ +V A + +G A+ + + E + + L T+ Sbjct: 285 DTLDAMKAGKV-DATIAEPPFFLGKAILNTAYDYLEGK-QVEPYVILDNQLVTQDTVD 340 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 137/309 (44%), Gaps = 19/309 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ L+ A L + A+ M I L+ ++ ++ G + AK+ + + Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDTMAIVVSTLN-NPFFVTMKDGAETRAKELGYNLIV 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + ++Q D SKE + V+ L R V AI+++ + S +R A+ + IPV+ + ++ Sbjct: 60 L--DSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASR 117 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 V +++ D + G+ GN + + ++ K+ + +R +GF Sbjct: 118 GD----VVSHIASDNVVGGEMAGN----FIVEKVGEKAKVIQLEGIAGTSAARERGEGFM 169 Query: 184 EVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 +K +++A+Q K ++V E L+ + PD+ A+ ++ LGA++A++ Sbjct: 170 NAVKGSH--MELLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQAS 227 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI 302 + ++ + G D T + + + L A + +G KV+ + E I Sbjct: 228 GK--EVMIVGFDGTDDGIAAVNRGK-LAATIAQQPDLIGALGIETADKVLKGE-QVEDYI 283 Query: 303 QVPIDLYTK 311 VP+ + TK Sbjct: 284 PVPLKVVTK 292 >UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=3 Tax=Bacteria RepID=C1YRI6_NOCDA Length = 332 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 158/306 (51%), Positives = 223/306 (72%) Query: 22 LFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 ++ IG +Y+D QG+YAGVR+G+Q+ A DS ++QL+E NA+GD S+ESTFVD Sbjct: 27 GCGARLGEDGRIGVVYMDAQGFYAGVREGMQNYADDSGRELQLLELNARGDASEESTFVD 86 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 + + +VDA++LS VS S VR A E+GIPVICYNTCI + +YV++Y++GDP E Sbjct: 87 VVSSADVDALVLSPVSATASVPAVRLAHESGIPVICYNTCIEDEAAKEYVTSYILGDPHE 146 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 FG+ LG+AAAD+F ++ P+I V+NCE EVCVQRR+GFEE L +R+P A+IVANQEG Sbjct: 147 FGRLLGDAAADHFEDEGVEDPQIGVLNCEFVEVCVQRREGFEEALFARLPDARIVANQEG 206 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 +D+A++VGE+L+ + PDL+A GE+GGAT+GAV+AV N+ AG++ VFGSDM+T+ A+ Sbjct: 207 ATIDEAVNVGERLLTAHPDLDAFYGEAGGATMGAVRAVTNRGLAGEVVVFGSDMSTDAAR 266 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLAT 321 L ++++LKA VDISG +G ++I +A E V + PIDLYT EDG++WL Sbjct: 267 ALSDHRILKANVDISGIAVGLLAGETVERIIAGEAPEEFVTEAPIDLYTTPEDGEEWLEE 326 Query: 322 HVDGLP 327 H DG+P Sbjct: 327 HPDGVP 332 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 129/327 (39%), Gaps = 21/327 (6%) Query: 8 TRNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDS---SVQVQ 63 RNLL A L S + AA+K TI I T Y+ + G A ++ ++V Sbjct: 5 LRNLLTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVD 64 Query: 64 LI--ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 LI + D ++ V+ + R V ++L+ + V A A IPV+ +++ Sbjct: 65 LIWKGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSA 124 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRK 180 + +++ D + G+ + + ++ +R Sbjct: 125 LKTDK----YVSFVATDNYKGGQLAAERMGQLLE----GKGNVILLRYAVGSASTEEREA 176 Query: 181 GFEEVLKSRVPGAQIV--ANQEGTVLDKAISVGEKLIISTP-DLNAIMGESGGATLGAVK 237 GF + LKS+ P +++ G + A + L+ ++N I T+ K Sbjct: 177 GFMDTLKSKFPNIKVISSDQHAGATRETAYQASQNLLNRFGHEVNGIFCPCEPPTVAMAK 236 Query: 238 AVRNQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A+R+ +A GK+ + G D ++ +L+N V + +V + +MG ++ + + Sbjct: 237 ALRDIGKAGGKVKMVGFDAGSQSVIDLKNGDV-QGLVVQNPLRMGYLGVITMVQHLQGEK 295 Query: 297 DGEKVIQVPIDLYTKTEDGKQWLATHV 323 EK I + + T + + + Sbjct: 296 -VEKRIDTGVQIVTPENMEQAGIKELI 321 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 134/321 (41%), Gaps = 26/321 (8%) Query: 1 MPTKMRTTRNLLLMATLLGS---------ALFARAAEKEMTIGAIYLD-TQGYYAGVRQG 50 M M++ L+ + A A + IG + ++ +++G Sbjct: 1 MSKLMKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 ++ A+ + LI +AQ D +K+ ++ L+ + V I+++ + V+ A+ Sbjct: 61 AEEEAQKQG--LTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANA 118 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC- 169 AGIPV+ + +N V++++ D + GK A+Y + +Q + + Sbjct: 119 AGIPVVTLDRSVNGGE----VASHVASDNVAGGKMA----AEYLLEKIGNQGDVVELEGI 170 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGES 228 +R +GF +V+ + ++V Q K +SV E ++ + ++ + + Sbjct: 171 PGASAARERGQGFHDVI-DQAKDVKVVGRQPADFDRAKGLSVMENILQANKNVKGVFAHN 229 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 LGAV+A+ + V G D T + ++ + + A V K +G Sbjct: 230 DEMALGAVQALEAAGMKD-VTVVGFDATDDAVNAVKAGK-MSATVAQKPKLIGKTAVDAA 287 Query: 289 LKVINKQADGEKVIQVPIDLY 309 K+I+ Q +K + VP+DL Sbjct: 288 KKIIDGQ-PVDKSLPVPLDLV 307 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 122/304 (40%), Gaps = 14/304 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A + TIG + + +G++ A++ + ++ +AQ D + T ++ L Sbjct: 38 ASKKDGGYTIGCTVYYMTEFVTLMTEGMEKKAEELGCDLVML--DAQQDAQNQITQIENL 95 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 +A+ VD II++AV + + +AGIP++ N N + Y+ D + Sbjct: 96 IAQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYH----YVGPDDV--- 148 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 G I + + ++ +QR +G + +L ++A+Q Sbjct: 149 -LAGELEMQNAIDEIGGEGNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTAN 207 Query: 203 V-LDKAISVGEKLIIST-PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 ++A+++ E + + ++AI+ + LGA++A+ KI V G D + Sbjct: 208 WSREEALTLVENWLETFSGKIDAIVAHNDEMALGAIQALEAAGLTDKIVVTGVDAILDGC 267 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 +++ +L V G+ + V+ + +++ + + TK + Sbjct: 268 NAVKDGTLL-GTVYQDAGLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITKDNVDELLDT 326 Query: 321 THVD 324 + + Sbjct: 327 IYAE 330 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 142/323 (43%), Gaps = 22/323 (6%) Query: 3 TKMRTTRNLLLMATLLGSALFARAAE----KEMTIGAIYLDT-QGYYAGVRQGVQDAAKD 57 T + TT ++ L+ + + ++ K++ +GA L + V + A+ Sbjct: 7 TPITTTLSIFLLLASCNQSGTSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQK 66 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 + ++ LI +A+ K+ V++ +A+ VDAII++ SS V +A A IP+I Sbjct: 67 AGIE--LITVDAERSALKQVEQVESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIIN 124 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCV 176 N+ + K SA++ D +E + AD + + +++ + Sbjct: 125 VNSETSSKP-----SAFVGSDDVESARIAMKFIAD----KLGGKGNVVMMHGYMGQAAQI 175 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTP-DLNAIMGESGGATLG 234 +R +G E+LK + P +++A+Q G KA+S+ E I S +NA+ + LG Sbjct: 176 KREQGAREILK-QYPNLKLLAHQTGEWDRAKAMSLMENWIQSYGSQINAVFAHNDEMGLG 234 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 AVKA+ + K+ V D + Q ++ L A V + ++ G A +K Sbjct: 235 AVKALTDAGLKDKVIVVSIDAIPDALQAVKKGS-LDATVFQNAEQQGAKAIATAIKAAKG 293 Query: 295 QADGEKVIQVPIDLYTKTEDGKQ 317 Q +K VP L TK K Sbjct: 294 Q-PFDKETLVPFQLVTKDNLSKF 315 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 56/319 (17%), Positives = 117/319 (36%), Gaps = 20/319 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M M+ + + ++ LLG A + A IG + + + A Sbjct: 1 MIEAMKYMKWITVLFCLLGLAACRQDA-PRFRIGVAQCSDDSWRHKMNDEILREA-MFYD 58 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V + +A D K++ V + + VD +I+SA + V A + GIPVI + Sbjct: 59 GVSVEIRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDR 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV-CVQRR 179 I + +AY+ D E G+ +GN A + + + ++R Sbjct: 119 KI----LSDKYTAYIGADNYEIGRAVGNYIASSLK----GKGNVVELTGLGGSTPAMERH 170 Query: 180 KGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF + S P +++ + + A + ++ P ++A+ + GA +A Sbjct: 171 QGFMAAI-SNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKIDAVYAHNDRIAPGAYQA 229 Query: 239 VRNQNQAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 + + ++ G D + + +N VL A G+ V + ++ + Sbjct: 230 AKKAGREKEMIFVGIDALPGKGNGLELVLDN-VLDATFIYPTN--GDKVMQLAMNILE-K 285 Query: 296 ADGEKVIQVPIDLYTKTED 314 + + + +T Sbjct: 286 KSYPRETVMNTAVVDRTNA 304 >UniRef50_A0QZE7 ABC transporter periplasmic-binding protein YphF n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZE7_MYCS2 Length = 329 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 141/329 (42%), Positives = 207/329 (62%), Gaps = 2/329 (0%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA--EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDS 58 MP +R L+ + + + + I +YL+ +G+YAGV+ GV+ A D+ Sbjct: 1 MPRSLRRRAVRFATLMLVAALAVSGCSRIGENGRIAVVYLNAEGFYAGVKVGVKKAFADA 60 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 QLIETNA+ D S+ES F+DT+ + VDA+ILS S + S VR A ++GIPVICY Sbjct: 61 GDAPQLIETNARSDPSQESAFIDTVSSVQVDALILSPTSADASVPAVRLAHDSGIPVICY 120 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 NTC+ + KYV ++++G P EFG+ G +YFI N I PK+AVINCE FEVC+QR Sbjct: 121 NTCVTESDARKYVDSWILGSPQEFGRIGGEQMGNYFIENGITHPKVAVINCEQFEVCIQR 180 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 R+GFE+ L S VP A+IVANQ+G ++D+A+ E+++ + PDL+A GE+G T+GAV+A Sbjct: 181 RQGFEQALTSLVPAAEIVANQQGLLVDEAVEASERILTAHPDLDAFYGEAGSMTVGAVRA 240 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 V+ + G++ VFG DM+T+IAQ L+ VL+ V DISG +G L+++ Q Sbjct: 241 VQARRLTGRVVVFGGDMSTQIAQMLQEGSVLRGVADISGITVGEMAADAALRLLRGQRSE 300 Query: 299 EKVIQVPIDLYTKTEDGKQWLATHVDGLP 327 ++ P+D Y + G +WL H DG+P Sbjct: 301 NLIVDAPVDAYEGPDAGTRWLREHPDGIP 329 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 131/302 (43%), Gaps = 14/302 (4%) Query: 12 LLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 +L+ +E IG + ++ +++G + +K+ ++ ++ ++Q Sbjct: 15 ILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVL--DSQ 72 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 D +KE + ++ L+ + +I++ + +V+ A++A IPVI + N Sbjct: 73 NDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGE---- 128 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRV 190 V +++ D ++ G+ + D K + + + +R KGF ++ + Sbjct: 129 VVSHIASDNIKGGELASSFIIDELKNKKDIK-VVELQGIPGASATRERGKGFHNIIDKKS 187 Query: 191 PGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIA 249 +++++Q + +SV E +I + D +A+ + LGA KA++ N+ KI Sbjct: 188 -NLKLISSQAANFDRAQGLSVMENIIQAQSDFDAVFAHNDEMALGAAKALKTANK--KII 244 Query: 250 VFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLY 309 V G D + +E + A V MG+ +K+ N Q + K I V + L Sbjct: 245 VVGFDGDEDAKTAIEK-SEISATVAQQPALMGSTSIETAVKISNGQ-NISKNIPVKLRLI 302 Query: 310 TK 311 TK Sbjct: 303 TK 304 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 137/313 (43%), Gaps = 14/313 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS-VQV 62 M+ +N T L ++ AA+ + T+G I ++ + G + A++ ++ Sbjct: 38 MKLLKNTAAAVTALALSVGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYEL 97 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 + + D + V+ + + VDAI+++ R +RRA EAGI VI ++ + Sbjct: 98 LAVGMQNETDFESQINAVENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVAL 157 Query: 123 NQKGVDKYVS--AYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 + +++ A++ D + A + + ++ +I + QRR Sbjct: 158 DTGAMEQQGIELAFVGPDN----RMGAEMAGNALGEALGEGGRVVIIEGNPGADNATQRR 213 Query: 180 KGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 GFE+ + + G +++ ++ ++A V ++ + PDL +M + +G ++A Sbjct: 214 LGFEDAIATH--GLELLESRTAHWETEEANQVFAAMLTAHPDLQGVMAANDSMAIGVIEA 271 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + I V G D + +E+ ++L A VD G+ M L+V+ D Sbjct: 272 LDAAGR-DDILVVGFDAVPAVLPMIEDGRML-ATVDQFGQAMAANAIDLALEVLETGVDL 329 Query: 299 EKVIQVPIDLYTK 311 E ++ PI+L T Sbjct: 330 EGWVRTPIELVTA 342 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 132/292 (45%), Gaps = 15/292 (5%) Query: 28 EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 +K+ G + ++ + + ++ + + QLI + D+SK+ ++ ++ + Sbjct: 38 KKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGD--QLITMDPAMDVSKQIDQINDMITQ 95 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 V+A+ L+ V G + +A IP+I ++T + YV+AY+ D GK Sbjct: 96 GVEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKD---MNYVTAYVGSDNKNAGKVC 152 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLD 205 G D + + KIA++NC R GF+ ++ + IVA Q+G L Sbjct: 153 G----DDLVKRYPNGGKIAILNCPTMNSINDRIAGFKSAIEGK--NFTIVAEQDGKGDLQ 206 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 ++ + + ++ S D+ AIMG + LGA+ A ++ + KI ++G D + + +E+ + Sbjct: 207 TSMKLADDILQSHSDIVAIMGGNDPTALGALAACKSA-KQSKILIYGVDGSPDAKKEIAS 265 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 S K++G KV+NKQ + EK V L K K Sbjct: 266 GGQFVGTGAQSPKQIGVKSAELGYKVLNKQ-NVEKKTPVQTFLINKDNVSKY 316 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 83/325 (25%), Positives = 141/325 (43%), Gaps = 25/325 (7%) Query: 5 MRTTRNLLLMATLLGSALF------------ARAAEKEMTIGAIYLDT-QGYYAGVRQGV 51 M+ +L+ + S EK TIG L +Y ++ + Sbjct: 1 MKKILLVLVTMLFIFSCGSKDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYLSLKDAI 60 Query: 52 QDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEA 111 + A +V++ + A D++K+ + ++ + + VDAII+S V G V++A A Sbjct: 61 EKEAAAQNVKLNVSI--ANQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVKKAEAA 118 Query: 112 GIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA 171 IPVI + V+A++ D GK G A + ++AVI Sbjct: 119 NIPVITVDVPAIGVD----VAAHVATDNYTGGKIAGEEMARLL----NGKGEVAVIEYPT 170 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGA 231 + VQR +GF+EV+ + P +IVA Q G +A++ + +I + +L I G A Sbjct: 171 VDSVVQRIEGFKEVIA-KYPDIKIVAIQAGITRPEALTAAQNMIQANKNLGGIFGFGDDA 229 Query: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 L AV AV++ + +I V G D E + + AV+ + MG TLK+ Sbjct: 230 ALAAVAAVKSAGKEDQIKVIGFDGMQEARDAVTKEKSFAAVITQYPEDMGKIAVDTTLKI 289 Query: 292 INKQADGEKVIQVPIDLYTKTEDGK 316 + + EK I V ++TK + K Sbjct: 290 LKGE-QVEKNIPVTPGIFTKEGEKK 313 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 72/329 (21%), Positives = 139/329 (42%), Gaps = 25/329 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA------AEKEMTI----GAIYLDTQGYYAGVRQG 50 M ++ + TL +L A + A K I + + +++ + +G Sbjct: 1 MKQLVKKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 ++AA +AQ D++ ++T +DT + + V+ I++SAV ENG + RA + Sbjct: 61 AKEAAASIGATANTQ--DAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQ 118 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE 170 AGI VI +T A ++ D ++ G + Y + + +++ Sbjct: 119 AGIIVIAVDTPAKSAD------AVVMTDAVQAG----EKSCQYLFEQMGGKGNVLLVDGT 168 Query: 171 AFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESG 229 + R G V+K + PG ++V Q ++V ++ +TPD+ I G + Sbjct: 169 PLQTIRDRITGCNNVVK-KFPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQGIFGMND 227 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE-NNQVLKAVVDISGKKMGNAVFAQT 288 + LGAV AV+ ++AG + V G D + E EL+ + + +M Sbjct: 228 PSALGAVLAVQQAHKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVA 287 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 +I+ + E I +P +L T+ + Sbjct: 288 QNIIDNKPPAETTILIPSELVTRDTVSQY 316 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 131/314 (41%), Gaps = 14/314 (4%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQ 61 + TR +L L L A ++ +G Y A + + +Q+ A+ Sbjct: 7 SRPLSRTRAVLFATVL---CLAGSTALADLRLGVSVGQFDNYIAYLVRAMQERARQVPGG 63 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 V L ++ D+ ++ V++ +A+ VDAII++ + RA+ AGIP++ N+ Sbjct: 64 VTLQVEDSGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSR 123 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 + V ++ D ++LG +Y + +A++ A + +R Sbjct: 124 PEVREFPAGVV-FVGTDE----RRLGQMQMEYLAEKMGGKGDLAILLGRLAHDDTRKRTA 178 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 G ++VL R P ++V Q G DK + + + S + +A++ + +GA A+ Sbjct: 179 GVKDVLA-RYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFDAVVANNDEMGIGAAMAL 237 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 R + +++V G D T + + Q L + MG L+++ + + Sbjct: 238 RQAGRR-EVSVGGIDGTPDGLAAIARGQ-LAVTLLRDPVAMGEEAVDVALRLVR-KDVVQ 294 Query: 300 KVIQVPIDLYTKTE 313 + +P+ L T Sbjct: 295 GDVWIPVHLITPDN 308 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 129/340 (37%), Gaps = 37/340 (10%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 MR L + + G +L +TIG I Y++ V QGV+ A K V + Sbjct: 1 MRKLLVFLSVVLITGLSLA-------LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKF 53 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + DI+ + +++ +A VD I ++ T+++A E GIPVI +T Sbjct: 54 FVPQKE-DINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPD 112 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFE 183 G Y+ D + G G + + K+ + +QR +GF+ Sbjct: 113 SGR----YVYIGTDNYQAGYTAGLIMKELL----GGKGKVVIGTGSLTAMNSLQRIQGFK 164 Query: 184 EVLKSRVPGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + + +IV + +A+S+ E + + PDL+A G V+N Sbjct: 165 DAIAD--SEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPSQALVVKNA 222 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK-------- 294 + GK+ + D T +I Q ++ V++A + MG ++NK Sbjct: 223 GKVGKVKIVCFDTTPDILQYVKEG-VIQATMGQRPYMMGYLSVTVLY-LMNKIGVQNTLM 280 Query: 295 -------QADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP 327 + VI +D+ T + G+P Sbjct: 281 MLPKVTVDGKVDYVIDTGVDVVTPENLDEYLKKMEELGIP 320 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 14/300 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 AA +E+ IG + + + QG + + V+LI +A+ K+++ +D+ Sbjct: 39 TEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSF 98 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 VA+ VDA+I+S V + + V+ +AGIPVI + + ++ G Sbjct: 99 VAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQ----VWVGSSNENGG 154 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGT 202 Y + KIAV+ Q R G+E VLK P +IV +Q G Sbjct: 155 ----EIEMKYVAEKLGGKGKIAVLRGPLGAFAEQGRFAGYETVLKD-YPDIEIVFDQTGN 209 Query: 203 V-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 ++A+++ E L+ + +L+AI+ ++ G LGA++AV+ + +I + G D + Sbjct: 210 WQREEAMALIENLLTAGTELDAIVCQNDGMALGALEAVKAAGKKDQITITGIDAIVDALD 269 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLAT 321 ++ + L A G +K + + + +P +L TK + Sbjct: 270 SIKAGE-LDATCFQDAIGQGTNALDMAVKAARGETV--ERMDIPFELVTKDNVDGYYDRI 326 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 128/314 (40%), Gaps = 14/314 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLI 65 L++ ++L L A K++ IG + +RQ +Q K V Sbjct: 1 MKLKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDG-NVSGQ 59 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 +A+GDI+++ ++ V++ VDAIIL+ V G ++ A A IP++ N Sbjct: 60 FEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVT 119 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEE 184 AY+ D GK A + + ++ E + E R +G EE Sbjct: 120 LPAGM--AYVGSDSKLAGKLQMEELAKLM----NGKGNVMILMGELSNEATRDRTRGVEE 173 Query: 185 VLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 V ++ PG +I+ Q +A+ + ++ ++AI + +GA+ A++ Sbjct: 174 V-AAKYPGIKILDKQTAKWGRKEAVDITTDWALTGQQIDAIASNNDEMAIGAILALKQAK 232 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 ++G + V G D T + + ++ L V K G ++++ + E + Sbjct: 233 KSG-VLVAGVDGTPDALEYIKKGD-LALSVFQDAKGQGEGAVQTAIQLVKGEK-VESNVL 289 Query: 304 VPIDLYTKTEDGKQ 317 +P L TK + Sbjct: 290 IPYQLITKANYQEF 303 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 114/313 (36%), Gaps = 19/313 (6%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65 R L L L R IG + + + ++ +++ Sbjct: 4 RRYHILFLYFALFACLACQRERNPRYVIGVSQCSEDLWRQTMNEELKREVALYQADAEVL 63 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 + + D K+ ++ + + VD +++S + + +A + GIPVI + I + Sbjct: 64 IRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATE 123 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEE 184 +AY+ + + GK+ G A + IA + + +R KGF + Sbjct: 124 S----YTAYVGANNYQIGKEAGLYAIGVLK----GKGNIAEVRGTKGSTSDAERHKGFVD 175 Query: 185 VLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 LK P QIVA G A + +++ P ++ + + G +A N Sbjct: 176 ALK-NAPEVQIVAETWGNFLQADAKTQMQQIFQEHPHIDLVFAMNDPMAAGTHEAAMQFN 234 Query: 244 QAGKIA-VFGSDMTTE-IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 GKI + G D + Q + N V A G V +K+++KQ ++ Sbjct: 235 --GKIPFIIGVDALQQVGIQNI-ENSVQDASFIYPTG--GEKVIELAMKILHKQ-PFQRE 288 Query: 302 IQVPIDLYTKTED 314 + + K+ Sbjct: 289 NILNTTVVDKSNV 301 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 119/304 (39%), Gaps = 14/304 (4%) Query: 19 GSALFARAAEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 SA A + TIG + Y+ + G + A+ V++++ + + Sbjct: 60 SSAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQL 119 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK--YVSAYL 135 ++ ++A VD I+L S +G + + EAGIP+I +T + + + + Sbjct: 120 GIIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFY 179 Query: 136 VGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQ 194 + E K G A F K A++ E R GF E Sbjct: 180 GTNNYEGAKLAGEYVAKNFEK----GTKTAILKGIEGQTNAADRYNGFIEGAGDT---VT 232 Query: 195 IVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS 253 +VA Q +D+ + + +I + PD+ + +GA++A++ N +I + G Sbjct: 233 VVAEQTANWEVDQGYTAAQNIISANPDVELFFCCNDNMGIGALRAIKEANMQEQIQIIGF 292 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 D +E +EN + L A V +MG LK+ + E I ++ TK Sbjct: 293 DAVSEALNLVENGEFL-ATVAQYPAEMGKLGVDNMLKIFDGGE-AESYIDTGTEVITKDN 350 Query: 314 DGKQ 317 G+ Sbjct: 351 VGEF 354 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 118/317 (37%), Gaps = 19/317 (5%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQ 61 R L L L R IG + + + ++ Sbjct: 9 KMTFRKYHILFLYFALFACLACQRERNPRYVIGVSQCSEDLWRQTMNEELKREVALYQAN 68 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 +L+ + + D K+ ++ + + VD +++S + + +A + GIPVI + Sbjct: 69 TELLIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRK 128 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 I + +AY+ + + GK+ G+ A + IA + + +R K Sbjct: 129 IATES----YTAYVGANNYQIGKEAGHYAIGILK----GKGNIAEVRGTKGSTSDAERHK 180 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF + L + P +IVA G A ++L P+++ + + G +A Sbjct: 181 GFVDAL-NNAPEVRIVAETWGNFLKADAKVQMQQLFQQHPNIDLVFAMNDPMAAGTHEAA 239 Query: 240 RNQNQAGKIA-VFGSDMT-TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 N GKI + G D E +ENN + + +G G V +K+++KQ Sbjct: 240 MQFN--GKIPFIIGVDALQQEGISNIENNVQDASFIYPTG---GEKVIDLAMKILHKQ-P 293 Query: 298 GEKVIQVPIDLYTKTED 314 E+ + + K+ Sbjct: 294 FERENILNTAVVDKSNV 310 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 137/311 (44%), Gaps = 17/311 (5%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGA-IYLDTQGYYAGVRQGVQDAAKDSSVQVQLIET 67 L + LL S+ +A A+ IG I + VR G+++AA+ VQL Sbjct: 4 CKLFIAVLLLVSSQWAAAS---YRIGVTIARVDDNFMTYVRSGLEEAARKE--NVQLQFE 58 Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 +AQGD+ ++ V +++ VDA+I+ V + ++ R A EA +P++ N +++ + Sbjct: 59 DAQGDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVL 118 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV-CVQRRKGFEEVL 186 K V+ + + +E G+ Y + IA+I + + R +G ++VL Sbjct: 119 PKGVTT-VASNDIEAGQLQ----MRYLAEKMGGKGTIALIMGDLAQNSTHDRSEGVKQVL 173 Query: 187 KSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ- 244 K PG IV Q +K + + +++ +AI+ + +GA A++ + Sbjct: 174 KD-YPGITIVEQQTAEWQRNKGMDLTSNWLLAGRTFDAIVANNDEMAIGAAMALQQAGKA 232 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 G++A+ G D + ++ +L A V K +K+I + + + V Sbjct: 233 KGEVAIVGIDGLPDGLAAIKRG-MLAASVFQDPKAQATTALQSAIKMIKGE-PVDAEVWV 290 Query: 305 PIDLYTKTEDG 315 P L T + Sbjct: 291 PFQLITPEQVA 301 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 120/313 (38%), Gaps = 13/313 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSS-VQV 62 M+ L +L S+ A A+ ++ I I + ++ +R GV+ A ++ + + Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 D + + VDAI+++ + V +A GI V+ ++ + Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKG 181 + G + ++ D G+ A+ + ++ ++ R +G Sbjct: 121 DGSGHLQ----FVTTDNHASGQLAARQLAELM----GQRGRVVLLRTVAGSASTDDRARG 172 Query: 182 FEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 F + L + P IVA+ G KA L+ + D +AI + AT G ++A+R Sbjct: 173 FIDYLSANAPAISIVADVYGGGSAGKARHSASALLAKSADFDAIFAVNESATDGMLRALR 232 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 AG+ G D T + + LE ++ ++ +MG + + + E Sbjct: 233 EAGLAGRKRFIGFDSTPFLLEGLEKKEI-DGLIVQDPDRMGYLAIKAVVAALRNRPIKES 291 Query: 301 VIQVPIDLYTKTE 313 VI L T+ Sbjct: 292 VIHTGTTLVTRAN 304 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 18/293 (6%) Query: 26 AAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 + + IGA L + V ++ AK+ V+LI +A+ K+ V++ + Sbjct: 27 SGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMG--VELITVDAERSALKQVEQVESFI 84 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 + VDAII++ SS ++ A +A IP+I N+ + K +A++ D E Sbjct: 85 GQGVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSETSAKP-----TAFVGSDDTES-- 137 Query: 145 KLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-T 202 A Y + I +++ ++R G +++LK+ PG +++A Q G Sbjct: 138 --ARIAMKYIAEKLGGKGNILMMHGFMGQAAQIKRDNGAKDILKAN-PGLKLLAEQSGEW 194 Query: 203 VLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 K +S+ E I S D +NAI ++ +GAVKA+ GK+ V D + Q Sbjct: 195 DRAKGMSLTENWIQSYGDKINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDALQ 254 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 ++ L A V + K+ G +K K+A EK + +P L K Sbjct: 255 AVKKGT-LDATVFQNAKEQGGKAIETAVKAAKKEA-FEKEVLIPFQLVDKGNV 305 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 136/310 (43%), Gaps = 19/310 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 MR + L++ L S + A+ + T+ + ++ ++ G + AK+ + Sbjct: 1 MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 ++ ++Q D SKE + V+ L R V AI+++ + S +R A+ + IPV+ + + Sbjct: 61 VL--DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGF 182 + V +++ D + G+ G+ + A K+ + +R +GF Sbjct: 119 RGE----VVSHIASDNVVGGEMAGH----FIEAKIGSDAKVIQLEGIAGTSAARERGEGF 170 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 +K Q++A+Q K ++V E L+ + PD+ A+ ++ LGA++A++ Sbjct: 171 MNAVKG--SKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQA 228 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 ++ + + G D T + +E Q L A V +G K++ + E Sbjct: 229 SGKS--VMIVGFDGTDDGIAAVERGQ-LAATVAQQPDMIGAIGIETADKMLKGEK-VEAY 284 Query: 302 IQVPIDLYTK 311 I V + + K Sbjct: 285 IPVALKVIAK 294 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 125/308 (40%), Gaps = 13/308 (4%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQL 64 + ++ LM +L ++ + + IG + ++ ++ G + A+ + + Sbjct: 5 KKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVV 64 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + ++Q D +KE V+ L+ V A++++ + +TV A+++ IPVI + N Sbjct: 65 L--DSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANG 122 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEE 184 +++++ D ++ G+ D F K + + R +GF Sbjct: 123 GK----ITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFHN 178 Query: 185 VLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 ++ ++ Q K + V E +I + P++ + + LGAVKA++ Sbjct: 179 IMDKN-DKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKASG 237 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 V G D + ++ N+ + A++ +G K+ ++ K I Sbjct: 238 INA--LVIGFDGNDDAKDSIDANE-MTAIIAQQPDLIGALGVELANKIYKGESIKNK-IA 293 Query: 304 VPIDLYTK 311 + +YTK Sbjct: 294 ADLKVYTK 301 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 129/314 (41%), Gaps = 18/314 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M ++LL A LL + A+ ++ + ++ ++ G + A + Sbjct: 1 MKRLAHHKVSVLLSAALLSVSTSFSASAQDAIAIVLSTMNNPFFVTMKDGAEAKAAELGY 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + LI ++Q D SKE V+ L R V AI+++ + +R A+ A IPV+ + Sbjct: 61 K--LIALDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDR 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 + +++ D + G+ G A N K+ + +R Sbjct: 119 TAAHGD----IVSHIASDNIAGGELAGEFIAQQLGKN----AKVIQLEGIAGTSAARERG 170 Query: 180 KGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF + + +++++Q K ++V E ++ + D+ A+ ++ LGA++A Sbjct: 171 EGFSNAVTAN--NFELLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRA 228 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + I V G D T E + Q L A V + +G +++ Q Sbjct: 229 IEAAGK--DILVIGFDGTDEGIAAVRR-QQLSATVAQQPELLGATAIMTADRILKGQ-VV 284 Query: 299 EKVIQVPIDLYTKT 312 EK I V + + T+T Sbjct: 285 EKSIPVALKIITQT 298 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 123/314 (39%), Gaps = 13/314 (4%) Query: 12 LLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70 L ++ L + A ++ IG + +R G++ AAKD SV VQ+ + + Sbjct: 4 LALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIE--DGK 61 Query: 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130 ++ + + +A VDAII++ V + + A AGIP+I N Sbjct: 62 NEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLPD 121 Query: 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLK-S 188 A++ + G + + V+ E + + +QR K +V+K Sbjct: 122 NQAFVASNEEVSGTLQTEEVCRLL----GGKGNVVVMMGELSNQAAIQRTKDIHDVIKRK 177 Query: 189 RVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-G 246 G ++VA Q K + + + + +A++ + +GA++A++ + Sbjct: 178 ECSGMKVVAEQTAEWSRLKGNDLMTNWLSAGLEFDAVISNNDEMAIGAIQALKASGRKMD 237 Query: 247 KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPI 306 + V G D T + +++ L V S K G +++ + +K + VP Sbjct: 238 SVVVAGIDATPDALAAMKSGD-LDVTVFQSAKGQGAGAVDAAVRLAKGENVDQK-VWVPF 295 Query: 307 DLYTKTEDGKQWLA 320 +L T K Sbjct: 296 ELVTPANLDKYLSK 309 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 120/327 (36%), Gaps = 19/327 (5%) Query: 2 PTKMRTTRNLLLMATLLGS---ALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDS 58 + + ++L + + A + + IG + + A + Sbjct: 3 KKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAAEK 62 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 + ++I +A D SK+ ++ V VD II S + V A +AGIPVI Sbjct: 63 HPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVILL 122 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQ 177 + I+ + ++ D ++ G+ G AD D K+ I E + Sbjct: 123 DRKIDGDK----YTQFIGADNVDMGRIAGEYIADTL---LPDGGKVCEIKGLEGTSGGID 175 Query: 178 RRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 R GF E +K +IVA +KAI+V E+++ + +++ + + GA Sbjct: 176 RDNGFREGIKKN-DKIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFLALNDPMAEGAY 234 Query: 237 KAVRNQNQAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 A +N + G I G D + + + ++ + G +++ Sbjct: 235 IAAKNAGREGDILFVGFDGLPTPDGGIRSVMDGRL---SMTQVYPTGGTEAIESAYQLLV 291 Query: 294 KQADGEKVIQVPIDLYTKTEDGKQWLA 320 + + +K + + ++ T + Sbjct: 292 EGKELDKTLTLTSEIVTPDNAEELLEK 318 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 61/325 (18%), Positives = 137/325 (42%), Gaps = 21/325 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSA-------LFARAAEKEMTIGAIYL---DTQGYYAGVRQG 50 M R + ++ + A L+ A ++ EK + I ++ + G Sbjct: 1 MSEYRRRSASVAIAAILIVVAVVGIYKWAASQRTEKTVDIIVTVKAKSSAIDFWKVLITG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 V+DAA + V +I ++ +I ++ + + + DAI+++A N ++ + Sbjct: 61 VEDAANEFGANVTVIGPPSETEIDTQTEQLKQAIRQKPDAIVMAATDYNRLVPVAQQIVK 120 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC- 169 AGI +I ++ IN +++ D + G+K G A + K+A+++ Sbjct: 121 AGIKLITVDSRINSDDA----LSFIATDNIAAGEKAGEEMAKLLPESS--SSKVAIMSYV 174 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGES 228 ++R KG + L+ ++ + +KA + ++L+ P + I+G + Sbjct: 175 YGTSSQLEREKGVRQWLEGHS-HIEVASTLYSEGRLEKAYELTKELLSEDPGIKGIVGLN 233 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 +T+GA +A+R+ +GK+ + G D + + + + VL+A + MG Sbjct: 234 EPSTVGAGRAIRDLGLSGKVKLVGFDSSVDEVKLI-EGGVLQATIVQKPYNMGYLSVKTA 292 Query: 289 LKVINKQADGEKVIQVPIDLYTKTE 313 ++ + + K+I + K Sbjct: 293 IEAVRGKK-VPKLIDTESVIINKDN 316 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 11 LLLMATLLGSALFARAAEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNA 69 + + L S + + I + +Y + G + AA+ ++ + Sbjct: 27 AVFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPE- 85 Query: 70 QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK 129 + + ++ ++ +V N DAI+++ ++ A IPV+ +T I ++ + Sbjct: 86 EFSPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIAL 145 Query: 130 YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKS 188 A + D +E G+ G A A+ + K+ +I+ QR++GFEE +K Sbjct: 146 ---ARISSDNVEGGRMAGEALAEQI----GGKGKVLLISVKPGISTTDQRKQGFEEAIK- 197 Query: 189 RVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK 247 + P + + + +A S+ + + PDL I G + + GA VR + + Sbjct: 198 QYPDIEYLGTEYCNDDPTQAASITTSTLQAHPDLAGIFGANVFSGQGAGTGVRQAGKRDQ 257 Query: 248 IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN-KQADGEKVIQVPI 306 ++V D + ++L L ++ +G ++ + + K I Sbjct: 258 VSVVAFDASPTQVEDLRRGN-LDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGF 316 Query: 307 DLYTKTEDG 315 T+ Sbjct: 317 TTVTRDNLD 325 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 142/317 (44%), Gaps = 15/317 (4%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSV 60 T M+T + A L + + + A K++ + + ++ V+ G + AAK+ Sbjct: 39 STTMKTRH--FIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGD 96 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + + I+++ V+ +A+ + ++L+A+ N + V A+ GI V+ +++ Sbjct: 97 KTSYVGPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDS 156 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRR 179 IN +++ + +K G AAD + ++ K+ +I + ++R Sbjct: 157 GINSDIP----VSFVATNN----RKAGAQAADALASQVNNKGKVGIIAHVAGTSSAIERS 208 Query: 180 KGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF E +K + P +++ Q KA+ +I + PDL I G + G+TLG A Sbjct: 209 EGFMERMKEKYPDIKVLPVQYSDGDPQKAMDKTIDMIQANPDLAGIYGTNEGSTLGVANA 268 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + +QN GK+ V G D T I L+N V++ V ++G ++ QA Sbjct: 269 IDSQNLKGKVKVIGFDSTEAIINFLKNG-VIQGFVVQDAYQIGYQGIKTLNAALSGQA-V 326 Query: 299 EKVIQVPIDLYTKTEDG 315 EK I +P+ Sbjct: 327 EKEIDIPVKFVNAENIN 343 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 127/337 (37%), Gaps = 37/337 (10%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA------------------RAAEKEMTIGAIYLDTQ- 41 M + T + + + E+ IG T Sbjct: 1 MKLVKKLTFAFVATLAVSTLTACSLYTGIPGRDGKEKVEEVTHKKPNELNIGVSISTTNN 60 Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 Y+ + ++ AK+ + ++ + ++AQ D + + V +++NVDAI+++ V + Sbjct: 61 PYFVSMNNAIKSMAKEKNTKLTV--SDAQNDSATQLNNVQNFISQNVDAILINPVDSDAI 118 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 ++ A+ A IPVI + N V + D + GK A N Sbjct: 119 VPAIKAANNAHIPVIAMDRGSNGGT----VLTTVASDNVAAGKMAAQAVEKLVGKNV--- 171 Query: 162 PKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTP 219 K+ ++ + R KGF +++ G I+++Q ++ + ++ S Sbjct: 172 -KVLELSGTPGASATIDRGKGFNS--EAKTLGLNILSSQSANFDRTTGLNTTQNMLQSHK 228 Query: 220 DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKK 279 D+ AI ++ LGA KAV+ Q KIA+FG D +E ++ + A + K Sbjct: 229 DVQAIFAQNDEMALGAAKAVQATGQ--KIAIFGIDGESETHDAIKAGT-MTATIAQQPAK 285 Query: 280 MGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 +G T + +I PI L K + Sbjct: 286 IGEMALQATYDYYQGKKIA-HMINSPIYLVDKDNVDQ 321 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 126/333 (37%), Gaps = 29/333 (8%) Query: 5 MRTTRNLLLMATLLGSALF--------------ARAAEKEMTIGAIYLD-TQGYYAGVRQ 49 M+ + L L A + + TIG L ++ + Sbjct: 1 MKHRLFIALACLLTVFAGCNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGD 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 + K ++ + D++K+S + + + V AI+LS ++ A+ Sbjct: 61 NIVSEGKKRGYDAVVVSGDK--DVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEAN 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 AGIPV + ++ GV ++ + D GK+ A + KIA+++ Sbjct: 119 AAGIPVFTVDIPCHEPGVK--IATQIATDNYGGGKEAAKAMIEALGEA---GGKIAILHF 173 Query: 170 EAFEVCVQRRKGFEEVLKSR----VPGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAI 224 + E C R KGF E++ + IVA + G D+ E + + PDL+ I Sbjct: 174 KQAESCQLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHGI 233 Query: 225 MGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAV 284 + A LGA A+ + ++ + G D E Q ++ ++ + KMG + Sbjct: 234 FAINDPAALGARAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIYADPI-QFPDKMGAQI 292 Query: 285 FAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 ++ + ++ +P LY K + K Sbjct: 293 VDAIIQQSKGETLPPQM-LIPTSLYKKADAEKD 324 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 140/334 (41%), Gaps = 19/334 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA-RAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDS 58 M +++ +L ++ L+ A++ +K+ TI I T G+Y + +G ++AAK Sbjct: 1 MSKRVKWVFTVLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRL 60 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 V++ + + + ++ ++AR DAI+++ N ++RA EAGI +I Sbjct: 61 GVELIFQGGP-EFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITV 119 Query: 119 NTCI-------NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-E 170 +T I KG + AY+ D +E G+ A A ++ K+ V N Sbjct: 120 DTFIGENGQYQTGKGNADFPLAYVASDNVEGGRIAARALAKAI----GEKGKVYVSNVKP 175 Query: 171 AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESG 229 QR +GF+E +K + PG ++A Q +KA S + PDL + G + Sbjct: 176 GISTTDQREQGFKEEMK-KYPGITVLATQYNDNDANKAASQLAAALARNPDLAGVFGANL 234 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 + +GA V+N + G + V D I +++ + A V +MG + Sbjct: 235 FSAIGAANGVKNAGKRGAVKVAAFDCPESIINDIKGGTIDMA-VCQHPAEMGRIAVEWAV 293 Query: 290 KVINKQADGEKVIQVPIDLYTKTEDGKQWLATHV 323 K +N + + + + + Sbjct: 294 KALNGEKIPNRY-GTGYTVIDRANVDSAEAKAAI 326 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 33/339 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSAL--------------------FARAAEKEMTIGAIYLDT 40 M + + + A+L+ A A + ++T G + + T Sbjct: 1 MKRILSAILSAAMAASLVACGSSQSHSSAPADTPAPSVPAESAADAPDDKLTFGLVVMST 60 Query: 41 Q-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSEN 99 Y+ ++ G Q+A ++ DI + + ++ L+ VDAI+L+ + + Sbjct: 61 NSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLDSD 120 Query: 100 GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI 159 + V +A +AGIPVI ++ +N ++++ D + G+ + I + Sbjct: 121 ALAAPVEKAMDAGIPVIVIDSAVNTDK----YTSFIATDNVAGGRMA----MERLIESIG 172 Query: 160 DQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIIST 218 ++ V+N R +G EE + V G ++ Q +A++ E +II Sbjct: 173 GSGEVVVVNALAGIPSNDARGQGAEEY-AATVDGITVLPQQHCLDQAEAMTATENVIIGN 231 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK 278 P+L I LGA +A+ ++ +AG+I + D + + LE+ + A+V Sbjct: 232 PNLKGIFATFNRGALGAAQAIVSKGKAGEIKMVAFDADADEIKLLEDGTI-DALVVQQPY 290 Query: 279 KMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 +MG +K +N + K + + + TK + Sbjct: 291 EMGKIGIEYAVKALNGEE-VPKTVAPEVVIATKDNMNDE 328 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 70/329 (21%), Positives = 151/329 (45%), Gaps = 23/329 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA-----------RAAEKEMTIGAIYLDT-QGYYAGVR 48 M + + + + + + + +K++TIG + ++ + Sbjct: 1 MRVRKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGSDKKDLTIGVSTITLQHQFFIDID 60 Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 +G+++ AK+ V+V + + + D++K+++ ++ + +NVD +I+ + V A Sbjct: 61 EGIKEKAKELGVKVIVNDPD--QDVAKQTSAIEDFIQQNVDGMIVLGTDNSAIVPAVEGA 118 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN 168 E +PV+ + +N + +++Y+ + GKKLG Y + +IA++ Sbjct: 119 FEK-MPVVTVDAVLNTEN----ITSYVGTVSYDAGKKLGEYTKKYIDEKLGGKSEIAIVT 173 Query: 169 CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGES 228 ++ +QR GF++ LK +I+ +Q G +++++ E LI S PD++ I + Sbjct: 174 DLKSQIQMQRIDGFKDALKGSA-NVKILNSQPGYDREESLNTVENLIQSNPDVDIIYATA 232 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 + LGA A+ + + + + G D+T E + + + +L A++ K+MG Sbjct: 233 ENSVLGAKAALESA-KNKDVKIVGFDLTEEASSGITDGTIL-AMIQQQPKEMGRLAVEAV 290 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 +K I + EK I VP LY K Sbjct: 291 VKAIKGEK-VEKNIPVPALLYDKENIKDF 318 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 133/335 (39%), Gaps = 26/335 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA------------EKEMTIGAIYLDTQGYYAGVR 48 M ++ +LL +A + + IG + + ++ Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLDEFLTYMQ 60 Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 +++ A + + I ++AQ D +++ V+ ++RNVDAII++ V + V Sbjct: 61 DAMKEEAANY-PDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMV 119 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN 168 ++AGIP+I N + +A++ + ++ G A ++ IA+++ Sbjct: 120 NDAGIPIIIANRTFDGVDQ---ATAFVGSESIQSGLLQMEEVAKLL----NNEGNIAIMD 172 Query: 169 CE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMG 226 E E + R +G +++++ G ++V + + + E + S +++A++ Sbjct: 173 GELGHEAQIMRTEGNKQIIEEH-DGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVA 231 Query: 227 ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA 286 + LGA+ A+ + + V G D T + ++ + L V K G Sbjct: 232 NNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGK-LDVTVFQDAKGQGATSVK 290 Query: 287 QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLAT 321 ++ N + + +I P +L T + Sbjct: 291 VAVQAANGEDVEDAMI--PYELVTPENVEEYEAKY 323 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 118/329 (35%), Gaps = 24/329 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE--------KEMTIGAIYLDTQG-YYAGVRQGV 51 M L+ + ++ + K++ +G + + + G+ Sbjct: 1 MKKFRNYVIMGLVSMLSIFLISCSQKGDTADGGQGGKKIKVGVSIANFDDTFLTYMMDGM 60 Query: 52 QDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEA 111 + AA+ ++L +A+ DI+K+ V+ V + D II+ V + + A Sbjct: 61 KKAAEKEG-DIELEFVDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTN 119 Query: 112 GIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA 171 G ++ N Y Y+ + + G +Y + I ++ + Sbjct: 120 GTKIVYVNRNPGNLPDGAY---YVGSEEKKAGIMQ----MEYLAEKMGGKGNIVILMGKL 172 Query: 172 FE-VCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPD-LNAIMGES 228 ++R +G EE + + P +I+ Q G ++ E + + +NAI+ + Sbjct: 173 DNEGTIKRTEGVEE-IAKKYPDIKILDKQTGLWQRTDGMAKTENWLNKYGNEINAIVSNN 231 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 LGAV+A+++ + G I V G D T + L + A V G Sbjct: 232 DDMALGAVQALKDSGKTG-IFVIGVDATPDGLAALAAGDI-SATVFQDADGQGGGAVEVA 289 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 K N + K VP L T + Sbjct: 290 KKAANGETVV-KETWVPFKLVTPENINEF 317 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 116/318 (36%), Gaps = 22/318 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD---TQGYYAGVRQGVQDAAKDSSVQ 61 M+ + L + + A A T+ ++A V +G ++ A + V+ Sbjct: 1 MKLVKLFLASSLAIIIGTLAFAD----TVLLSMKGPGAGNPFWASVERGAREKAAELGVK 56 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 + ++ + D+ + V+ + + V AI ++ N ++ + A AGIPV+ +T Sbjct: 57 IVVLSPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTK 116 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 KG ++ D AAD+ +A++ R Sbjct: 117 GINKG-----VTFIGTDNKAG----AKMAADFICDRVSRGSDVAILQGIITQSTGKARAD 167 Query: 181 GFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 G LK G IVA Q + +V E ++ L A+ + LGAV+A+ Sbjct: 168 GAHAGLKG--CGLNIVAEQPANWDRAQGRTVMENILTRNQKLKAVFASNDNMALGAVEAL 225 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 ++ + + V G D + A+ + + + A + MG + L++ Sbjct: 226 KDADMLNDVIVVGFDANPDAAKSILAGE-MTATIAQFSYNMGAYGVEKALELAKG-RSLP 283 Query: 300 KVIQVPIDLYTKTEDGKQ 317 V+ L TK Sbjct: 284 PVVDTGTLLVTKKNAADF 301 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 132/330 (40%), Gaps = 17/330 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA---AEKEMTIGA-IYLDTQGYYAGVRQGVQDAAK 56 M R LL + ++ K+ IG I + + +++ AK Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 + L+ NA+GD +++ + + LVA+ +AI++ V SS + A+++GIP+I Sbjct: 61 NL-PDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPII 119 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVC 175 N + + +AY+ D + G A + + ++ E Sbjct: 120 SVNNFLKNQD---DAAAYVGSDSITSGIMEAEYAVKQL----NGKGNVVILKGEPNHETA 172 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLG 234 ++R +GF++VL+ P +I+ Q G + + E I + +AI+ + +G Sbjct: 173 IKRTEGFKQVLQ-NYPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILANNDEMAIG 231 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 A+ A++ N + V G D T + + L+ LK V + G+ K++ Sbjct: 232 AIMALKENNLINNVFVGGIDATPDALKLLKEGS-LKVTVFQNAAGQGSEAIKAAYKLVKG 290 Query: 295 QADGEKVIQVPIDLYTKTEDGKQWLATHVD 324 + K I VP +L + K Sbjct: 291 EK-INKKIFVPYELVVPNDADKYLGKQSAK 319 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 130/324 (40%), Gaps = 25/324 (7%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEK-----EMTIGAIYLD-TQGYYAGVRQGVQDAA 55 K + +++ + A + E + + + Y+ V G + A Sbjct: 3 KKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAG 62 Query: 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 K+ V V ++ NA+ ++ ++ ++ + ++ A+++S + + A+ +PV Sbjct: 63 KELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VPV 119 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEV 174 + +T K ++++ + E G + G + K+A+I+ Sbjct: 120 LLIDTDAKLKNK----TSFIGTENYEAGYEGGKLLSSLLQK----GDKVAIISGALGNTA 171 Query: 175 CVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATL 233 +R KG + L+ G IVA Q KA+SV E ++ D+ + + L Sbjct: 172 TDERVKGAKAALEEA--GMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMAL 229 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 G ++AV + + V G+D T E + + + + L + + KMG L IN Sbjct: 230 GVLRAVEAKGL--DVKVIGTDGTLEAVESILDGK-LAGTIAQNPYKMGYEGVKNALAAIN 286 Query: 294 KQADGEKVIQVPIDLYTKTEDGKQ 317 + +K I +++ TK ++ Sbjct: 287 GEK-VDKRINSGVEVITKDNAQEK 309 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 120/313 (38%), Gaps = 13/313 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLI 65 TT LL + + A + IG + + ++ ++ G ++ A+ ++ + Sbjct: 29 TTVGLLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFT 88 Query: 66 ET--NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 T N + D + + + LV D I+L+ V +A +AGI VI + ++ Sbjct: 89 ATGINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALD 148 Query: 124 Q--KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRK 180 + K A+ D K G A K+AV+ + VQRR Sbjct: 149 EATKKAAGIDLAFFGPDNRAGAKMSGEVLAKAL----GAGGKVAVLEGNPEADNAVQRRL 204 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 GF++ + +VA + S+ + PDL IM + GAV+A+ Sbjct: 205 GFDDAIADGSLNL-VVAESGHWETSEGQSITAAWLKKYPDLQGIMCANDSMAFGAVQALE 263 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 N KI V G D + +++ ++L A V+ G +M + + + Sbjct: 264 AANLLDKIKVVGFDNIPAVQPLIKDGKML-ATVEQYGAQMAAIGMDYGYRTLKGEK-FSG 321 Query: 301 VIQVPIDLYTKTE 313 I+ + L TK Sbjct: 322 WIRTELKLITKDN 334 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 112/304 (36%), Gaps = 20/304 (6%) Query: 23 FARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 + + + TIG + + Y + + ++ AA+ Q + +A D SK+ + V+ Sbjct: 41 ACKGPDSKYTIGMSQANLAEPYRVRMDEDIRKAAEKV-PQFDVQFADAAKDNSKQVSDVE 99 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 + + VD +++S + V++A GIPV+ + + + + Y+ D ++ Sbjct: 100 NFMTKKVDLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGEA----FTTYIGADNVQ 155 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 G++ G + KI + +R KGF E + ++V + Sbjct: 156 IGRQAGEYFKNTL---LPQGGKIVQLKGLSGSTPAAEREKGFMEGIAG--SKIEVVDTAD 210 Query: 201 G-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT-- 257 G + L+ + PD+ A+ ++ GA A + + + G D Sbjct: 211 GEWERSVGQQKMDALLKAHPDIQAVYAQNDPMAEGAWLAAQAAGRKD-LKFVGIDGLPIE 269 Query: 258 -EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + +E + L A G K++ K +P +L T+ + Sbjct: 270 SGGIKAVEQGR-LSATNLYPTG--GEEAVEAARKLLIDCQPVPKEQTLPTELVTRENAAQ 326 Query: 317 QWLA 320 + Sbjct: 327 VYTR 330 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 132/333 (39%), Gaps = 33/333 (9%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAA-----------------EKEMTIGAIYLDTQG-Y 43 + T L+ ++L ++ E IG L + + Sbjct: 8 KKMLIFTAITLIGVSVLLGGCGSKQGNTQTGTSSGTTTQNTEKSGEKVIGVSLLTREHVF 67 Query: 44 YAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR 103 Y + + +Q+ A+ + + I +A D +K+ V + + VDAI+L+ + G + Sbjct: 68 YNLIEKAIQEKAQ--GYKFKPIIMDASQDSNKQLAQVQDFITQKVDAIVLAPTASAGIAP 125 Query: 104 TVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK 163 V A +AGIPV + V +++ D GK AA+ + K Sbjct: 126 AVDLAKKAGIPVFTIDIKAEGD-----VKSHVATDNYAGGKLAAKYAAEKV---LNGKGK 177 Query: 164 IAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLN 222 +A+I + CV R KGF++ L P ++V + +KA ++ + +++ PDL+ Sbjct: 178 VAIITYSEVQSCVDREKGFKDALAE-YPNIKVVDVENCSGSAEKAANLTQDILLKFPDLD 236 Query: 223 AIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGN 282 I +GAV ++ + + V G D E QE++N+ + A V ++G Sbjct: 237 LIFAVGDPFAVGAVSTIKAAGR--NVKVIGFDGNPEAIQEIKNHGLWVADVVQHPDQIGG 294 Query: 283 AVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 V N ++ + +P + + Sbjct: 295 KVIDLIADYFNGKSVPP-QVLIPPTIVDASNAK 326 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 141/322 (43%), Gaps = 20/322 (6%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEK------EMTIGAIYLDTQ-GYYAGVRQGVQDAAK 56 ++ L+ M+ +L + + A +K + I I T Y+ V+ G + AAK Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 ++ + + DI E V+ + + VD I+L+A + V A A IP++ Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVC 175 ++ ++ V++++ D + + + A+ K+ V+N Sbjct: 121 TVDSGVDSDK----VASFIATDNEKAASQAADVCAELI----GKSGKVGVVNFVPGVSTA 172 Query: 176 VQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLG 234 VQR KGF + + S+ G +++ Q + KA+++ E ++ + PD+ AI + + LG Sbjct: 173 VQREKGFRDGM-SKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVKAIFAANNRSALG 231 Query: 235 AVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 +A++ + AGK+ V D + + +E+ + A++ + KMG L ++ Sbjct: 232 VAQALKGKGVAGKVKVVAFDADPDEIKGIEDGSI-TALIVQNPYKMGEEGVKNVLALMKG 290 Query: 295 QADGEKVIQVPIDLYTKTEDGK 316 + EK I + + TK Sbjct: 291 ET-VEKRIDTGVTIVTKENIND 311 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 127/296 (42%), Gaps = 11/296 (3%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQL 64 + +N+ + L+ + A + I + + Y+ +RQG ++ AK+ ++ + + Sbjct: 4 KLLKNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIV 63 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + + V+ ++A+ VDAII++ ++A +AGIP+I + ++ Sbjct: 64 QVAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDA 123 Query: 125 KGVD--KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKG 181 K + Y+ D G A+ + +A++ + QR+ G Sbjct: 124 KAAEAAGLKFNYVGVDNFNGGYLEAKNLAEAI----GKKGNVAILEGIPGVDNGEQRKGG 179 Query: 182 FEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 + P +IVA+Q ++A++V ++ + P++N I + +GAV AV Sbjct: 180 ALKAFAE-YPDIKIVASQSANWETEQALTVTTNILTANPNINGIFAANDNMAIGAVTAVE 238 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 N AGK+ V G D + ++ + ++ +D KK LK INKQ Sbjct: 239 NAGLAGKVLVSGYDGIPLAIEYVKQGK-MQNTIDQLPKKQVAIAIEHALKQINKQE 293 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 129/294 (43%), Gaps = 17/294 (5%) Query: 26 AAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 ++ G ++ +++ +++ ++ ++ +I +AQ D K+ + V+ L+ Sbjct: 63 GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVI--DAQNDAQKQISMVEDLL 120 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 + +D + L + ++ + +AG+PV+ ++T + + V+ +V D G Sbjct: 121 TQGIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDL---VNTIIVSDNYYAG- 176 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TV 203 A+ + + K+ ++ + E C++R+ GF++ +IV+ +G Sbjct: 177 ---ELVAEDMMKKLPEGSKVCILTSPSAEACIKRQNGFKDKADGYF---KIVSEIDGKGD 230 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 ++ + E ++ PDL A + + +G V+A+ +Q + + V+G D Q + Sbjct: 231 TATSLGIAEDVLQGNPDLGAFYAINDPSAIGCVQALESQKKTD-VLVYGVDGQPMGKQAI 289 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 ++A S +G A K+++ ++ EK I VP L K + Sbjct: 290 SEGT-MEATAAQSPINIGKESVAAAYKILSGES-VEKNILVPTFLIDKNNVTEY 341 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 109/298 (36%), Gaps = 14/298 (4%) Query: 29 KEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 + TIG Y+ V VQ A ++ ++ + + ++ T ++ V++ Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVD--KYVSAYLVGDPLEFGKK 145 VD IIL + G ++ A IPVI +T ++ + + D G+ Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 146 LGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV- 203 +G A D K A++ + R GF + +VA Q Sbjct: 199 VGEEVAQM----YPDGCKTAILRGVQGQTNDDDRYNGFLD---KAGDVVDLVAEQHANWE 251 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 D+ + + +I + DL I E+ +GA +AV +I +F D TE Q + Sbjct: 252 TDQGYTAIQNIIQANKDLQVIYCENDLMGIGAYQAVDEAGLTDQIKIFSYDGVTEGLQYV 311 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLAT 321 + + + KMG A K+ + D E I +L T + T Sbjct: 312 VDGK-FVSTCAQQPIKMGKLGVANMAKIFAGK-DAESYIDTGCELITSENAKQTLEET 367 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 134/319 (42%), Gaps = 14/319 (4%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS 59 M K ++L+ T+ ++ A ++ I +Q Y+ V+ G + AAK+ Sbjct: 1 MTRKALFVALVVLLLTVGFLSVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELG 60 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 ++ + D++K+ ++ V + +DAI+++A N ++RA EAGIPVI + Sbjct: 61 AEIVWRGPAQETDVAKQVNVINDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITID 120 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA-VINCEAFEVCVQR 178 + IN + +++ + E KK A+ + ++A + + R Sbjct: 121 SGINAD----FPISHIATNNKEAAKKAAEVLANII----GKKGEVACIPFVAGAATSIAR 172 Query: 179 RKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 GF+E + S +VA Q + A+ V E ++ + P+L I + +GA + Sbjct: 173 ENGFKEGI-SNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIFAANEAGAVGAAR 231 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 A++ + + + + G D ++ ++ A++ MG + + + Sbjct: 232 ALKARGKTADVILVGFDAAQTEIDAMKEG-IIDALIVQRPYMMGYEGVKNAVAALEGEE- 289 Query: 298 GEKVIQVPIDLYTKTEDGK 316 EK+I + + T Sbjct: 290 VEKLIDTGVVVATPDNMND 308 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 15/303 (4%) Query: 5 MRTTRNLLLMATLLGSALFA-RAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 M+ + +A L SA F A ++ + ++ + +Y + G+++ AK + ++ Sbjct: 1 MKNLKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLK 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + A D++K+ ++ + +NVDAI++S V G +++A A IPVI + Sbjct: 61 VSV--ANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAE 118 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 + +++ D G G A + ++ +++ R +GF Sbjct: 119 NSK----IVSHIATDNYGGGVVAGKLAVKQL----GGKGQVVMLSYPGISSVEARLQGFR 170 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + + +IVA Q G +++++ ++ + PD + I +GA AV Q Sbjct: 171 DAVADT--DIKIVAVQPGKTREESMTSTINMLQANPDTDLIFAFGDDMMIGAGLAVTKQ- 227 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 K V G D E + ++ N + VV MG +N + + Sbjct: 228 -KSKAVVIGFDGMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPI 286 Query: 304 VPI 306 VP+ Sbjct: 287 VPV 289 >UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Actinomycetaceae RepID=C2KRR4_9ACTO Length = 326 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 126/334 (37%), Gaps = 21/334 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEK----------EMTIGAIYLDTQGYYAGVRQG 50 M T + + L + + A+ + I ++ V++G Sbjct: 1 MRTSFKVLALGAIACLSLTACGSSPASSDGKSADAKSNSKKIILVSKGFQHTFWQSVKKG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 + K+ +V+ I + ++++ + + AI L+A+ + +++ Sbjct: 61 ALEKGKELGYEVEFIGPKNETAVTEQLDQLKNALNAKPAAIGLAALDSKAAEPILQQIKN 120 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NC 169 AGIPVI +++ ++ + D G K A ++ + ++ + Sbjct: 121 AGIPVIAFDSGVDSDIP----LTTVQTDNRTAGAKAAEKLAQLM----GNKGTVGIVCHG 172 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESG 229 +A R GF++ +K P +++ Q KA + ++ S D+ A+ G + Sbjct: 173 QATTTGKGRCFGFQDWMKEHAPDIKLLQEQWADERGKAADAAKAIVKSNTDVTAMYGSNE 232 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 G ++ V+ + G+I + G D +++ A + + KMG A Sbjct: 233 VTAAGVLQGVKEAGKMGQITIVGFDSGKAQIDAIKSGDEAGA-ITQAPVKMGAETVAAAD 291 Query: 290 KVINKQADGEKVIQVPIDLYTKTEDGKQWLATHV 323 K I ++ EK+I Y K+ + +++ Sbjct: 292 KAIKGES-LEKIIDSGFAWYDKSNIDTPEIQSNI 324 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 77/309 (24%), Positives = 135/309 (43%), Gaps = 16/309 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQ 63 ++ +L L A +AE IGA L +Y + ++ A+ +V ++ Sbjct: 3 RKSLSRILFSGVALAMMAGAASAEG---IGASLLTQQHPFYIALADAMKKEAQAENVPLE 59 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + A D+SK+ V+ + + VD II+S V G + +A +AGI VI + N Sbjct: 60 VSI--ANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPAN 117 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 V++++ D G+K A ++ +AVI+ + V R +GF+ Sbjct: 118 NVD----VTSFVGTDNFAGGEKAAELMAKTI----GEKGNVAVIDYPTVQSVVDRIEGFK 169 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + + + P +IVA Q G +A+S + ++ + PD+ I G A L A AV++ Sbjct: 170 KGIA-KYPDIKIVAIQPGITRPEALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAK 228 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 ++ V G D E ++N+ V+ V+ +MG KVI + K Sbjct: 229 LENQVKVIGFDGMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPI 288 Query: 304 VPIDLYTKT 312 VP + TK Sbjct: 289 VP-GVVTKD 296 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 132/343 (38%), Gaps = 41/343 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFAR-----------------------AAEKEMTIGAIY 37 M R L+ L+ A + A+K++ +G Sbjct: 1 MKRMKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVTETSKPADKKIVVGMTL 60 Query: 38 LDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAV 96 + + + A + V++++ + D + + V+T+++ VDAIIL+ Sbjct: 61 YSLKNEFTVRLSNAAKKKAAELGVELKIY--DGNYDPNTQINQVETMISDGVDAIILNPQ 118 Query: 97 SENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIA 156 + V +A+ A IPVI NT ++ + + ++Y+ + G+ Sbjct: 119 DAKACAVAVDKAAAANIPVIGVNTRVDSEKL----TSYVGSKDVYAGELE----MQAIAD 170 Query: 157 NKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKL 214 + I +++ ++R +G + VLK + P +++A + +A++V E Sbjct: 171 KIGGKGNIVILDGPLGQSAQLERSEGIQNVLK-KYPDIKVLAEKTANWSRSEAMTVMENW 229 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVD 274 + + ++A++ E+ LGA KA+ + I G D T+ +E ++ A + Sbjct: 230 LQAFDKIDAVVAENDEMALGARKAIEAKKL--DIPTIGVDGITDALDAVEKGTLI-ATIF 286 Query: 275 ISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 G G+ + + + +K + + TK + Sbjct: 287 QDGAGQGSKALEIAVAKAKGE-NVDKEYWIDFEPVTKDNVAEF 328 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 147/338 (43%), Gaps = 35/338 (10%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA----------------RAAEKEMTIGAIYLD-TQGY 43 M M+ LLL LL S A + AE + I + + + Sbjct: 1 MKNIMKI--FLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPF 58 Query: 44 YAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR 103 + +++G++ A ++V +I +++ D+ ++ ++ L+++ AI ++ +S + Sbjct: 59 WVEMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIP 118 Query: 104 TVRRASEAGIPVICYNTCINQKGVD---KYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 + A++ GI V+ + ++ + + V A++ D ++ G K A+Y I + Sbjct: 119 AIVEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKG----AEYIIGKLPE 174 Query: 161 QPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIIST 218 ++A+I ++ + RR+G E K+ ++VA+Q KA+ V LI Sbjct: 175 GGEVAIIEGKSGNASGEFRRQGATEAFKADS-KFKLVASQPADWDRSKALDVAANLIQKY 233 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK 278 P+L AI + LGAV+AV N + G+I V G+D E ++ + L A V Sbjct: 234 PNLKAIYACNDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGK-LNATVAQDPA 292 Query: 279 KMGNAVFAQTLKVINKQADGE-----KVIQVPIDLYTK 311 +G ++ I + K + V +L +K Sbjct: 293 MIGATSLKILIEAIKDKPQISPDIEAKEVPVESNLISK 330 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 117/295 (39%), Gaps = 16/295 (5%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQ-VQLIETNAQGDISKESTFVDT 82 + K ++G D + ++ + QG + AK + V++ ++ D++++ ++ Sbjct: 54 GSPHKLRSVGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIEN 113 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 VA N D II++A G V +A +AG VI +T I + A + + ++ Sbjct: 114 FVAANTDLIIINAADSKGIRPAVDQARQAGKVVIAVDTAIEAD-----IDATVTTNNVQA 168 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG- 201 G + Y + + ++N +QR G +VL + P ++++ + Sbjct: 169 G----EISCQYIADRLKGKGNVVIVNGPPVTSVIQRVDGCLKVLA-KYPDIKLLSKDQNA 223 Query: 202 -TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 D + V L+++ P ++A+ + + +G A + + G D E Sbjct: 224 EGSRDGGLRVMSDLLVTFPKIDAVFAINDPSGVGVDLAANQAKRQD-FFIVGVDGAPEAI 282 Query: 261 QELENNQ-VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 + + + + A + + M +++ + I +P L TK Sbjct: 283 EAIASGDSLYAATATQNPRGMTQTAIQVGNDILHGKKPESPNILIPAKLITKENV 337 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 119/308 (38%), Gaps = 18/308 (5%) Query: 24 ARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 + A+ + IG + + Y + ++ AA + Q ++ +A D +K+ V+ Sbjct: 40 CKGADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEV-PQFEVKFADAAQDNAKQVADVEN 98 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 + + +D +I+S + V++A + GIPV+ + + + ++ GD ++ Sbjct: 99 YITQQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDA----YTGFIGGDNVQI 154 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 G + G A+ + + I +R +GF +K+ P ++VA G Sbjct: 155 GTEAGKYVAEKV---LPNGGNVVEIKGLAGATPQAERNQGFATGIKAN-PKVKVVATASG 210 Query: 202 TV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT--- 257 +K + + L+ + P ++ + + GA A + + ++ G D Sbjct: 211 DWLREKGQAQMDALLKANPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIGIDALPIPS 270 Query: 258 EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + +E + L A G A K++ EK +P L KT + Sbjct: 271 GGIKAVEQGR-LTATFTYPTN--GKEAIAAAKKLLVDCGTIEKTQTLPTRLIDKTNAAQI 327 Query: 318 WLATHVDG 325 + + G Sbjct: 328 YAQENPTG 335 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 20/318 (6%) Query: 8 TRNLLLMATLLGSAL-------FARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 R LLL + ++ A AA + ++ + G++ + Sbjct: 20 LRRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGD 79 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + L+ +AQ K+ + ++ + AI L+ V+ T+ A A IPVI + Sbjct: 80 R--LVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDA 137 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 + + V A + D + G+ A D Q K+A++ + CV R Sbjct: 138 PVPDADL---VLAQVASDNVAAGRLAAQALGDA-----RPQAKVAILQYSVNKACVDRVA 189 Query: 181 GFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF +VL PGA I+A Q+ + V L+ PDL+A+ + +G V A+ Sbjct: 190 GFTDVLAKSFPGATIIARQDVKGTSEATRPVMRDLLGRFPDLDAVFPINDPGAIGCVSAI 249 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 ++GK+ V D + E AQ + N + + KK+G+ + + + Sbjct: 250 DAAGRSGKVLVVTVDGSREAAQFILNGGI-HSTSAQFPKKIGSLAAGAAYDHLAGK-PVD 307 Query: 300 KVIQVPIDLYTKTEDGKQ 317 K I+VP+ L TK + Sbjct: 308 KEIKVPVTLVTKANAAEF 325 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 125/315 (39%), Gaps = 18/315 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ +L++ + L +K + IG + V ++ A V L Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCCGGVWREKVNNEMRQAQYQYK-NVDL 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + T A+ D ++ +D+++AR VD I+++ + N + + RA A IPVI ++ + Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKT 119 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 + +A + GD +E G+ A + + + + I + ++R +GF Sbjct: 120 P----HYTASIGGDNVEAGR----EVARFLASKLDGKGTVVEITGLKDASPVIERHRGFH 171 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 EV+K PG ++V + L++A + ++ + + + G S +GA + Sbjct: 172 EVMK-NYPGIKVVTLESNWKLERAQELMKQYLDKGGHADGVFGHSDLGAIGAFLEAERRG 230 Query: 244 QAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 ++ + G D E ++ Q + V G + + ++ + +K Sbjct: 231 IDKQMLIVGIDGLPGEWEGVDRVKRGQFAASYVY---PTQGEKIMELAMNILQGK-PYKK 286 Query: 301 VIQVPIDLYTKTEDG 315 + L T Sbjct: 287 DNVMKSFLATPENCD 301 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 119/318 (37%), Gaps = 16/318 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS-VQV 62 M +L A L G A + AA ++G D ++ + +G +DAAK V Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 ++ +++ D++ + ++ +A VD I+++A G +++A AGI + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI------AVV 114 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 A ++ D G + A + + ++N R G Sbjct: 115 AVDVGAVGADATVMSDNAMAGAESCKFMAQQL----GGRGNVVIVNGPPVTAVSARVAGC 170 Query: 183 EEVLKSRVPGAQIVA--NQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 ++VL PG ++++ D + L+ + ++A+ + +GA AV+ Sbjct: 171 KKVL-GNYPGIKLLSDNQDAHGSRDGGMETMANLLTAHKKIDAVFAINDPTGIGAELAVK 229 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAV-VDISGKKMGNAVFAQTLKVINKQADGE 299 ++ + D + + L++ + L AV + M ++N + + Sbjct: 230 QAGRSDVKLIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKRPAK 289 Query: 300 KVIQVPIDLYTKTEDGKQ 317 + +P TK Sbjct: 290 SQVLLPTPAVTKANVASY 307 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 126/338 (37%), Gaps = 28/338 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALF---------------ARAAEKEMTIGAIYLDT-QGYY 44 M L+ +L + +A+ ++ I I ++ Sbjct: 1 MKKFTALLVVALMTVVMLSACGSNNSDGSSKSGTDNGGTKASGDKIYIPIISKGFQHQFW 60 Query: 45 AGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRT 104 V+ G + AA + +V++ + + K+ + + + AI +A+ S Sbjct: 61 QAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASVPL 120 Query: 105 VRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKI 164 +++A AGIPVI +++ ++ S + + + A+ + +I Sbjct: 121 LQKAKAAGIPVIAFDSGVDSDIPITTAS----TNNVAAAALAADKMAELI----GGEGEI 172 Query: 165 -AVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLN 222 +++ + V RR GF +K + P +IV Q G K+ + + +I + P++ Sbjct: 173 GVIVHDQTSVTGVDRRDGFVNRIKEKYPNIKIVDIQYGGGDHLKSTDLAKAMIQAHPNIK 232 Query: 223 AIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGN 282 G + G+ +G + AV + G+I V G D +++ V+ + + +G Sbjct: 233 GFFGSNEGSAVGVINAVTELKKEGQITVIGFDSGKAQIDAIKSG-VMAGAITQNPVGIGY 291 Query: 283 AVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 ++ I + E I Y K+ + Sbjct: 292 ETVKAAVEAIRGEK-VESTIDTGFYYYDKSNIDSDEIK 328 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 117/319 (36%), Gaps = 24/319 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M + L L+ L+G IG + + + A Sbjct: 1 MKKHL-----LFLILCLMGILTSCSQKHTRYYIGVSQCSDDEWRHKMNHEIVREALFYD- 54 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V++ A+ + + ++ + R VD +I++ + V +A GIPV+ + Sbjct: 55 GVEVEIRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDR 114 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 I + +A++ D E GK +G Y + + KI I E ++R Sbjct: 115 KI----LSDRYTAFVGADNCEIGKDVG----QYIVNRLGGKGKILEITGLEGSTPAMERH 166 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +G + LK+ PG +I A+ +G L A + ++ +N + ++ +GA + Sbjct: 167 RGLADALKAE-PGIEITASVDGAWLQSVAGEKMDSILQDNKGINLVFAQNDRMAVGAYLS 225 Query: 239 VRNQNQAGKIAVFGSDMTTE---IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 R + ++ G D +++ VL A G+ V + ++ + Sbjct: 226 ARQRQLEKEMLFVGIDALPGKGYGVEQVLEG-VLDATFIYPTG--GDKVMQVAMDILE-K 281 Query: 296 ADGEKVIQVPIDLYTKTED 314 E+ ++ L KT Sbjct: 282 RPYERDTKLSTALVDKTNA 300 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 116/318 (36%), Gaps = 12/318 (3%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDA-AKDSS 59 + R L L + +A + I I Y+ VR+G DA AK + Sbjct: 18 KQESNMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVEN 77 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + ++ ++ + V V + V AI+L+ + ++R+A EA IPV+ + Sbjct: 78 YTMTFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLID 137 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQR 178 + I+ G Y ++L D G+ LG D+ K+A+++ + R Sbjct: 138 SMISDSGAK-YYQSFLATDNEAAGEALGKEMVDHV----GQTGKVAIMSYVPGVGSEIGR 192 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 GF + + QIV A++ ++ S PDL I + +G + Sbjct: 193 VGGFRKYIAEHS-HIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFAANEMTAVGVGR 251 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 A++ ++GK+ D + + + + + MG + V+ Sbjct: 252 AIQQAGKSGKLYAIAFDGNEDEQGFVRSGT-FQLLAVQGSYAMGAKGVETAIGVLTGAKP 310 Query: 298 GEKVIQVPIDLYTKTEDG 315 K + + T Sbjct: 311 T-KYVNTGVVFVTSANLD 327 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 121/292 (41%), Gaps = 14/292 (4%) Query: 30 EMTIGAIYLDTQ-GYYAGVRQGVQDAAK--DSSVQVQLIETNAQGDISKESTFVDTLVAR 86 + + + ++ VRQG AAK + V VQ + D++ + + + + Sbjct: 42 PIELAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQ 101 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 VD ++ +A ++A + GI V+ ++ + + + V D + ++ Sbjct: 102 GVDGLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPV---FATDNVAAAERA 158 Query: 147 GNAAADYFIANKIDQPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEGTV-L 204 + D K+A I + R +GF+ VLK P ++VA Q Sbjct: 159 TEYLVEQLGE---DGGKVAFIPFQPGTATNDTRTEGFKNVLKEN-PQVKLVAEQSSESNY 214 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 ++A+ V E ++ + PDL+AI + LGA +AVR+ +AG+I + G D + + + Sbjct: 215 NRALQVTEDILTAHPDLDAIYAANEPGVLGAAEAVRSAGKAGEIIIVGWDTAPDELKAVR 274 Query: 265 NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 V+ A++ + +MG +K+I E L T+ Sbjct: 275 EG-VVSALIAQNPFRMGYDGVNAAVKMIRTGEQVEGG-DTGAILVTRENIDD 324 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 121/309 (39%), Gaps = 19/309 (6%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 A AA + IG ++ G++ GV+ AK+ L++TNA GD ++ Sbjct: 61 ANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFD--LVQTNANGDAQQQVNDAIN 118 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L+++ V A++L+ + V +A+ IPV + + V++++ D + Sbjct: 119 LLSQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK----VTSFVASDNVAL 174 Query: 143 GKKLGNAAADYFIANKID-QPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 G+ AD + + +I R KGF + + + P ++VA QE Sbjct: 175 GQTAAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIA-KYPDIKVVARQE 233 Query: 201 GT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ------AGKIAVFGS 253 G +K+++ ++ P ++A+ G + T+GA KA+ N + I V G+ Sbjct: 234 GAFDQEKSLNAMTNILQKYPQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGA 293 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 D T + + + A + + +M + D P L K+ Sbjct: 294 DGTAQALSAIRAGKQ-DATISQNPIQMAAKSLQFVADY-TAKKDVPANYAWPTLLIDKSN 351 Query: 314 DGKQWLATH 322 + Sbjct: 352 IDSDATKKY 360 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 119/289 (41%), Gaps = 15/289 (5%) Query: 31 MTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 I A + D + ++ + AK + + V+ + +A+GD + + ++ ++ A Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFL--DAKGDSNLQIDQLNEAISNKAAA 127 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 I+L A+ TV +A EAGIPV+ N +N V + D E G+ G Sbjct: 128 IVLLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL-----SDDREAGRMQGEFM 182 Query: 151 ADYFIANKIDQPKIAVINCEAF-EVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAI 208 A + K+ + E+ V V+R +GF+E + P +++A+ +G + + Sbjct: 183 ASHL----PPNAKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGM 238 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 + P++N ++ + LGA++A++ N+ V G D T +E + Sbjct: 239 KAMTLWLSFFPEINGVVAANDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAGE- 297 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 L V + ++ +A E + +P T+ + Sbjct: 298 LSQTVKQDAEGQAAGAVTLVQGFLSGKAPTES-LDIPFTSITRENVAQF 345 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 136/337 (40%), Gaps = 37/337 (10%) Query: 2 PTKMRTTRNLLLMATLLGSALFA------------------RAAEKEMTIGAIYLDTQGY 43 TK+R T ++ ATLL + L A A+ K +T + Sbjct: 3 STKLRKTLAVVASATLLCAGLAACNRDSGGNNATGDHTTTGSASAKTITFALS-TQANPF 61 Query: 44 YAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR 103 + +R+ Q A + + + +A D + +S + A +I++ + + Sbjct: 62 FVQMRESAQKKADELGLAINFQ--DAADDSATQSNQLANAAASGTGVVIINPTDSDAMAP 119 Query: 104 TVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK 163 V++ + IPV+ + +N V++Y+ D GK+ +D + + Sbjct: 120 AVQQLVDEKIPVVAVDRAVNNAN----VASYIASDNETGGKQAAKVLSDAI----NGEGE 171 Query: 164 IAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDL 221 I V+ + +R KGF+E LK P ++VA Q K + V L+ + P++ Sbjct: 172 ILVLQGKTGSSASRERGKGFDEGLKDN-PNIKVVAKQTAEFERAKGLDVTTNLLQAHPNV 230 Query: 222 NAIMGESGGATLGAVKAV-RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 AI E+ LGA++A+ + + V G D + + +++ ++ A + KM Sbjct: 231 KAIFAENDEMALGAIEALGSKAGK--DVKVIGFDGAEDALKAIKDGRMY-ASIAQQPVKM 287 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + K++ + +K+ QV + TK K Sbjct: 288 AEQAVIEASKLLKGETATKKM-QVEVVAATKENVDKF 323 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 138/331 (41%), Gaps = 23/331 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFAR---------AAEKEMTIGAIYLDTQ-GYYAGVRQG 50 M + +R L L+A A+ GA + ++ + +G Sbjct: 1 MNSALRFLIPLTLLAIGSIGCSNGSDSHSPQSDSTADSGRLFGASFQTMNNPFFVDLGEG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 ++ + + ++ ++ +AQ + K+ + L+ +NV I ++ V+ G ++ A+ Sbjct: 61 LKKELEANGDRLVIL--DAQFNSLKQKNDLSDLILQNVAGIFVNPVNWEGLKGSLLEANR 118 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE 170 +P+I + + + ++ + + D + G+ A A + ++ V++ Sbjct: 119 KKVPIIIVDAPVKKAD-EELIVCTVASDNVRAGELAAQALA-----KVNPKARLVVLHLS 172 Query: 171 AFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESG 229 + C+ R GF+ L + P +I+ QE + A V LI PDL+A+ + Sbjct: 173 VNKACIDRVAGFKTEL-EKHPEMKILDVQEAQGTTEGARPVMRDLIGRYPDLDAVFAIND 231 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 LG + A+ + N+ ++ + D + + ++ + L + +++G + L Sbjct: 232 PNALGVISALDSANKLDQVTIVTVDGSQAGIKAIQAGK-LHSTSAQFPREIGKIAAEKML 290 Query: 290 KVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 + + EK ++V ++L T +Q+L Sbjct: 291 AHLKGE-PVEKDVKVRVELITAEN-AEQYLE 319 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 115/302 (38%), Gaps = 19/302 (6%) Query: 22 LFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 + A ++TI + ++ R+G + AK+ V + + Q D + + ++ Sbjct: 67 VPTVAPGTKITIAMVPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQ-QADPALQVKIIE 125 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 L+ + V AI +S + + GI ++ ++ Y+ D Sbjct: 126 DLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQR----VMYIGTDNKA 181 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ- 199 GK +G A + K+ +I QR +GF+E + P Q+V Q Sbjct: 182 AGKTMGETMAKLL----NGRGKVGIITGGLGALNLNQRIEGFKEGV---GPNIQVVDVQA 234 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN---QNQAGKIAVFGSDMT 256 L K +SV E ++ + PDLN I S + +++ Q++ GK+ + D Sbjct: 235 TDDDLQKGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDL 294 Query: 257 TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-KVIQVPIDLYTKTEDG 315 E + ++ ++ A + +MG ++ +A K I + + TK Sbjct: 295 EETKRAIQEG-IIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKENLN 353 Query: 316 KQ 317 Sbjct: 354 SY 355 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 111/296 (37%), Gaps = 14/296 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + E I + + V ++ ++ ++ + +++ D + + + V+ Sbjct: 61 GTSGEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQ 120 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + AII AV S VR EAG+P+I +N +++ D G Sbjct: 121 ILNGTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFENCD------SFVGAD----G 170 Query: 144 KKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 G+ A + + +A++N E RR E L P Q+V G Sbjct: 171 AVAGSLLARFTGEKTGGKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGD 230 Query: 203 V-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 DKA+ + E + S D++AI+ + +G AV ++ I V G + + Sbjct: 231 WKRDKALQLVETWLQSGTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDGIN 290 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + + ++ A V + + L+ I+ + K I +P +L T Sbjct: 291 AVRDGKI-AATVFQNPDRQAEEALEAALQYIHGEKPESK-IMIPFELVTADNVDDY 344 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 126/320 (39%), Gaps = 23/320 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M K+ + ++ L G A ++ IG + + ++ + + Sbjct: 1 MKRKLHLIIYVAIIVLLTGCA----QKPRKFVIGVSQCSEDIWRDKLNDELK-MGEYLND 55 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + ++ D ++ V+ + VD +I+S + S++V RA + GIPVI Y+ Sbjct: 56 SLIVKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDR 115 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 N +A++ D GK +G A + +I I+ E ++R Sbjct: 116 KTNSDK----YTAFIGCDNYTIGKSMGTFIAQQLQ----GKGRIVEISGLEGSSPALERH 167 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF + +K PG Q+VA++EG ++ I ++++ T D + + + GA A Sbjct: 168 RGFMDAIKP-YPGLQVVASEEGNWKEEGGIQAMKRILKQTQDFDYVFAHNDCLAWGAYVA 226 Query: 239 VRNQNQAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 R G D + + + + +A K G+ V A +K++ Q Sbjct: 227 ARQMRVKRNYKYTGVDGMATEGGGLELVRDG-IFEASYLYPTK--GDEVIALAMKILKHQ 283 Query: 296 ADGEKVIQVPIDLYTKTEDG 315 E+ + + T+ Sbjct: 284 -PYERDNYLSTSIITQANAA 302 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 12/320 (3%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ T +L LL ++ A K IGA + Q + VQ+ Sbjct: 1 MKKTLLAMLCGGLLLTSQAVIA--KNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQI 58 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 ++ D + + V + +NVDA+++ R A +AGIP+I N N Sbjct: 59 KLADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPND 118 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEE 184 + + YV++++ D +E G+ GN + + + ++ + +R +G E Sbjct: 119 EHMQ-YVTSFVGSDEIEGGRIQGNFIVNTLAGKNAES--LILLGPLGQDAVTKRTQG-NE 174 Query: 185 VLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + ++ ++V+ QEG D+ +++ E ++ +N I+ + +GA+ A R Sbjct: 175 EIFAQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKGINVIVSNNDEMAIGAILATRKLG 234 Query: 244 QAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI 302 I + G D T + + L + L A V S + G + V Sbjct: 235 IKDEDITIVGLDATPDALEYL--GKGLDATVFQSAQGQGYTGAEMAYLAAKGEK-VPSVK 291 Query: 303 QVPIDLYTKTEDGKQWLATH 322 VP +L T + +++ A + Sbjct: 292 WVPFELVTPDK-KEEYQARY 310 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 125/301 (41%), Gaps = 12/301 (3%) Query: 21 ALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 + + K +I + ++ ++ G++D AK++ V++ +++ + + + Sbjct: 44 SGASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLAN 103 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V + VD I++S + A EAGIPV+ + + +++ D Sbjct: 104 VQDAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDIGTDSGE----YVSFISTDN 159 Query: 140 LEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 KKLG AD + +IA+ +A + V R++GFEE +K ++ + Sbjct: 160 SGGAKKLGEYVADKLN-KGDEIAQIAL--NQARKNGVLRKEGFEEGIKEKLKEVDFRQME 216 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 + D+ + + LI S P+L I S ++GAV A++ N K + G D + E+ Sbjct: 217 KVN-RDEGVRYTQDLITSYPNLKCIFCHSEDPSMGAVTALKEIN-NDKCKIVGFDCSPEV 274 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWL 319 + +++ +L A MG ++ EK I V L T+ + Sbjct: 275 VEAIKSGDIL-ATAAQQPVFMGRTAVDCLKTHLDGGTP-EKEISVDTLLVTQDNINDVYD 332 Query: 320 A 320 Sbjct: 333 K 333 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 126/331 (38%), Gaps = 18/331 (5%) Query: 1 MPTKMRTTRNLLLMAT-----LLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDA 54 M + T G+ + K I + +Q ++ V QG DA Sbjct: 1 MKKSKYIALAAVAAFTVAPLSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDA 60 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 A V + + K++ V + ++ DA+ ++ + E + V+ A A IP Sbjct: 61 AAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIP 120 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFE 173 + ++T +++ + +++G AA+ IA + K AVI + + Sbjct: 121 LFAFDTAFETNA--DAITSTVKTSN----REVGKVAAENLIALLNGKGKYAVIAHSQTDA 174 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQ--EGTVLDKAISVGEKLIISTPDLNAIMGESGGA 231 +RR GF + +K P ++V KA + ++ + PDL+AI + Sbjct: 175 TSTERRDGFLDYMKKNAPDMEMVGEVQYSNADQAKAQDIASAILQANPDLDAIFATNEAT 234 Query: 232 TLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 +GA V + ++G K+ + G D Q + + V+ V + ++G +K Sbjct: 235 VVGAATPVESALKSGHKVLLVGVDSGKAQQQYIRDG-VISGSVSQNPYQIGYKTIENAVK 293 Query: 291 VINKQADGEKVIQVPIDLYTKTEDGKQWLAT 321 +N + +KVI Y + Sbjct: 294 SLNGEK-IDKVIDSGCFWYNADNIDDDDVQQ 323 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 119/329 (36%), Gaps = 27/329 (8%) Query: 1 MPT-KMRTTRNLLLMATLL---------GSALFARAAEKEMTIGAIYL-DTQGYYAGVRQ 49 M T + N+ ++A + + A ++ M IG T ++ + Sbjct: 1 MKTTRKNMIANVSVIAAVCVFGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESK 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 + K +V A D+ +S +D + V I++ A +G V+RA Sbjct: 61 TAESYGKSVGAEVLSQV--ANEDVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAV 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 AGIPVI + + + D K+ G + + KIA++N Sbjct: 119 SAGIPVIGVDNQSKNA------TVNITTDN----KQAGEISCRSLADKLGGKGKIAILNG 168 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGES 228 R G + + + P +IVA+Q G D A+ + ++ + PDL+ + Sbjct: 169 TPVSAVDDRVTGCK-GILGQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGFFAIN 227 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 + +G A + + + + D + + ++ A + Sbjct: 228 DPSAVGVQLAAEQKGAS--VVITSVDGASSATDAIAAGGLITATAAQDPAALMRQAIDLG 285 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + ++N + +KVI VP +L + K Sbjct: 286 ISIVNGKEPDQKVILVPTELVDASNVAKY 314 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 121/327 (37%), Gaps = 17/327 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE--MTIGA-IYLDTQGYYAGVRQGVQDAAKD 57 M + + +L + L+ IG I + ++ + A Sbjct: 41 MNKPKKAVQGVLFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAK 100 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 ++LI +A+ D K+ + + + VD IIL V+ + + +AGI ++ Sbjct: 101 QD-NLELIFVDAKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVY 159 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCV 176 N AY+ + L FG++ AA + D I +I E + Sbjct: 160 LNRRPT---YLPDGVAYVGSEELRFGEEQAKYAASH-----SDGGNIGIIMGMMTVEAAI 211 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 R +G E+ K + P I+ Q + + V E I S L+ I+ + LGA Sbjct: 212 LRTQGVEDFFKEK-PEYNIIRKQTALWQRSQGMVVMENWINSGDKLDIIISNNDDMALGA 270 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 ++A+R + V G D T + ++N L A V G+ L IN + Sbjct: 271 IQALRAAGKLDDTIVIGVDATPDGLMAIKNGA-LDATVFQDGRSQARGAIDAALSGIN-K 328 Query: 296 ADGEKVIQVPIDLYTKTEDGKQWLATH 322 +K+ +P +L TK + Sbjct: 329 TPRDKITWIPAELVTKDNLAEFEAKQG 355 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 123/299 (41%), Gaps = 13/299 (4%) Query: 22 LFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFV 80 L A + IG + Q +Y +++G + AAK ++ + +A GD++K++ + Sbjct: 25 LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFL--DANGDVNKQNNDI 82 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 L+ R VD +I++ V+ + + A + G+PVI + IN G V+A+L D + Sbjct: 83 QDLLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGG----VTAHLGRDNV 138 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 + GK +G+A + K+ I V RR GF + LK G +IVA Sbjct: 139 KMGKAVGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKG--SGFKIVAGP 196 Query: 200 EG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 A++ + L+ + PD+ + + +GA+K + + + V G D +E Sbjct: 197 YAEYTRANAVTAMQDLLQAHPDVKVVYAHNDDMAMGALKVLAEAGKKD-VFVAGVDGLSE 255 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + A + +G+ + I + TK G+ Sbjct: 256 ALASMAGGDQYVATALNDPRYLGDMTVQTA-RAIKAGKKVPAFVDAGTKAVTKANVGEF 313 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 15/322 (4%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDS--SV 60 + L+ L+ + + E +G T G+ + Q +D AK Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + S + V+ L+A+ VDAI++ + + S + EAGIP++ + Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 + + + GD G G YF+ K+ I + V QR Sbjct: 121 ELTNDAA----TVVVKGDNYGAGVNAGE----YFMEQLGGNGKVVEIAGPSNSVTQQRSD 172 Query: 181 GFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF E ++ +IVA+Q G + ++ V E ++ S P+++A+ + G LG ++A+ Sbjct: 173 GFREAIEG--SDIEIVASQSGEFSTETSLQVMENILTSQPEIDAVYTQDDGMALGVLQAI 230 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 N+ + G + ++ + + ++ ++ A S M + N + Sbjct: 231 NEANRTDIQFITGVAGSKDVYEIIMDDGLITATFLYSP-LMVKEGVIIGADLANGEDPDS 289 Query: 300 KVIQVPIDLYTKTEDGKQWLAT 321 + VP TK + Sbjct: 290 AEVVVPATPVTKDNVDDHYDPE 311 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 123/322 (38%), Gaps = 29/322 (9%) Query: 8 TRNLLLMATLLGSALFARAAE-------------KEMTIGAIY-LDTQGYYAGVRQGVQD 53 L+L L + + T+G T ++ + ++ Sbjct: 15 LAWLVLSCVALSCGGPSSPTPVSSDSGESTKGSVSKGTVGVSLLTTTNPFFNVIADNIKS 74 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 V+++ + + D++++ V + AI+L G ++ A+ AGI Sbjct: 75 ELVKEGYDVEVV--SGEFDVARQKNQVKDFIVAGHAAIVLCPCDSRGIGPAIQEATAAGI 132 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE 173 PV + G + V +++ D L GK+ A + + K+ +++ +A E Sbjct: 133 PVFTADIACLAPGAE--VVSHIATDNLGGGKQAAEAMIEAVGSA---GGKVVILDFKAAE 187 Query: 174 VCVQRRKGFEEVLKSRVPG-----AQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGE 227 C+ R +GF+EV+ IV+ G DK+ E + + PDL I Sbjct: 188 SCILRVQGFKEVIDKHNSENPSSAITIVSELPGDGQKDKSYKAAEDALQAHPDLAGIFAI 247 Query: 228 SGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQ 287 + + LGA A+ N+A ++ + G D + Q ++ ++ + ++G V A Sbjct: 248 NDPSALGARAALEKANKADQVKIVGFDGQPDGMQAIDEGKIFADPI-QHPDQIGKRVAAS 306 Query: 288 TLKVINKQADGEKVIQVPIDLY 309 + + K +P LY Sbjct: 307 IVSYFRGEE-VPKEQLIPTGLY 327 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 25/327 (7%) Query: 5 MRTTRNLLLMATLLGSAL-------------FARAAEKEMTIGAIYLDTQGYYAGVRQGV 51 M+ L + L+ S A E + IG + GY+ VR+G+ Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPVGYFVAVREGI 60 Query: 52 QDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEA 111 AA +++V++ ++A D SK+ + V+ L+++ VD I ++AV N + VR A+EA Sbjct: 61 DKAAAENNVEITY--SDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEA 118 Query: 112 GIPVICYNTCINQKGVDKY--VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 IP++ + I K +Y + Y+ + +E GK G A K+ +I Sbjct: 119 NIPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEK---GGKVVLIEG 175 Query: 170 -EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGE 227 + RRKG E L + ++V Q ++A+ + E LI ++ I+ + Sbjct: 176 RPGTSPQINRRKGVMEALDTN-KNFEVVYTQTSNWEKEQALKIVEDLIQKNQTIDVIIAQ 234 Query: 228 SGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQ 287 + +GA A++ N KI V G +TE +++ ++ +S + G Sbjct: 235 DDNSAIGAGMALKEANLKDKILVIGLGGSTEGLNAVKSG-LIDGTTYMSAVEEGYTAITA 293 Query: 288 TLKVINKQADGEKVIQVPIDLYTKTED 314 +K +N + E V Q+ K+ Sbjct: 294 AVKYLNGEK-VEPVTQMKQVEVNKSNV 319 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 16/315 (5%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQV 62 ++ T +L A G+ FA+ ++TI A+ T ++ + G++DAA+ +V + Sbjct: 2 RLLTASTAVLAALAWGTLGFAQ----QLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNL 57 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 L ++ D+ + L+ R A++++A++ +++A++ IP++ + + Sbjct: 58 ILQAVASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNL 117 Query: 123 NQKGVDK---YVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQR 178 + + + ++ + D G K+ VI R Sbjct: 118 DPAVLQREGVKIAFSISSDNRRAGASAAEYVVSKLGQ--GFSGKVLVIEGLAGNVTGAAR 175 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 R GF E LK P AQIVA G KA ++ + PDL AI + LGAV+ Sbjct: 176 RDGFTERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRHPDLAAIYCANDTMALGAVE 235 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 AV + K+ V G+D ++ + + + L A V +G+ LKVI + Sbjct: 236 AVFAAGK--KVLVVGTDGNSDAVKSIRAGR-LNASVAQLPFLVGSRAIENVLKVIKGEQV 292 Query: 298 GEKVIQVPIDLYTKT 312 K+I VP + K Sbjct: 293 DPKII-VPTLVIDKA 306 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 119/318 (37%), Gaps = 16/318 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M +T L ATLL A + A + ++ +G AK+ Sbjct: 1 MKK--KTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGY 58 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + GD++K++ ++T +AR A+IL + S ++ R +AGIP Y+ Sbjct: 59 DTLVASHD--GDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDR 116 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRR 179 IN+ G+ +V + + + G A+ D + + + R Sbjct: 117 EINKTGI---AVTQIVSNNFQGAQLAGEKFAELM----GDGGEYVELLGPESDTNAQVRS 169 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +GF ++L P ++VA Q +A S E ++ + P++ ++ + LGA A Sbjct: 170 EGFHDIL-DNFPEFKMVARQSANWSQTEAFSRMESILQANPNIKGVITGNDSMALGAEAA 228 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 ++ + + + G D + + +KA + V Q I + G Sbjct: 229 LQAAGRKD-VFIVGFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTG 287 Query: 299 -EKVIQVPIDLYTKTEDG 315 + + L + Sbjct: 288 LPEKQLMDCVLIDSSNAK 305 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 122/316 (38%), Gaps = 15/316 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAA--EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQV 62 M+ L L + + + +A + +G + + R+ A S V Sbjct: 1 MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAV 60 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 ++ ++A D+SK+ +D +A+ V+AI++ V G V +A++AGIPVI Sbjct: 61 EVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQS 120 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKG 181 ++ ++ G+ G ++ KI + +R+KG Sbjct: 121 AGGKY-----TFVGSKNIDAGRLQGEYMKEHL----PKGAKILYLEGTPGLSHTQERKKG 171 Query: 182 FEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 FE+ L R + + + + V E I S P +AI+ + LGA++A++ Sbjct: 172 FEDAL-GRSDVTTLASLSANYDRAEGMKVTEDWIQSFPKFDAIVAANDQMALGALEALQG 230 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 ++ + + G D T + ++ + + A F ++ + K D Sbjct: 231 ADRLKGVMISGVDGTADALNAIKAGT-MSQTIFQDAAGQAKAAFEV-VEGLKKGEDAPAE 288 Query: 302 IQVPIDLYTKTEDGKQ 317 VP TK G+ Sbjct: 289 KLVPFASITKDNVGQY 304 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 117/301 (38%), Gaps = 15/301 (4%) Query: 21 ALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTF 79 A A A +K+ IG T + + A + + A V+LI T+ + K+ Sbjct: 25 AGDAVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKH-PDVELIITDGEDRTEKQVAD 83 Query: 80 VDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDP 139 V+ L+ + VDA+++S G + V++A +A IPV + + + ++ GD Sbjct: 84 VENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQ----YTQFVGGDN 139 Query: 140 LEFGKKLGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPGAQ-IVA 197 G+ G A + Q I + + R GF E + PG + ++ Sbjct: 140 KLIGRAAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHE-FTDKEPGIKNLLD 198 Query: 198 NQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 Q G D+A ++ + + ++ + G + GA A ++ + +I G D Sbjct: 199 KQSGDWKQDQAYNIMATALRNNEKIDLVYGHNDPMAYGAYLAAKDAGREKEIKFIGIDAL 258 Query: 257 T-EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 E + N ++ + + G Q +K + + EK + + T+ Sbjct: 259 PNEGVTWVSNGELTATFLYATP---GAEGLRQAVKFLKGEK-VEKTVTLDTLKVTEENAA 314 Query: 316 K 316 + Sbjct: 315 Q 315 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 127/318 (39%), Gaps = 18/318 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQ 63 M+ + A L+ +A A TIGA + +R G++D AK V Sbjct: 1 MKKFIIGIAAAVLVSTAAHAE------TIGASMAVFDDKFGTLLRNGMEDYAKTLD-GVD 53 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L +A D++K+ + + +A VDAII+ V + ++ + A++AGIP++ N Sbjct: 54 LQIEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPV 113 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK-IAVINCEAFEVCVQRRKGF 182 A++ + ++ G + K + ++ + + R K Sbjct: 114 NIDTLPEKQAFVASNEVDSGTLQTREICKLL----DGKGKAVVIMGELSNQAARMRTKDI 169 Query: 183 EEVLK-SRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 +VL + G +IV Q + + + + + +A++ + +GA++A++ Sbjct: 170 HDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSAGIEFDAVIANNDEMAIGAIQALK 229 Query: 241 NQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 ++ + + G D T + + + L V G LK+ +A E Sbjct: 230 AAGRSMDSVVIGGIDATDDALAAMAAGE-LDVSVFQDAVGQGKGSIDAALKLSKGEA-VE 287 Query: 300 KVIQVPIDLYTKTEDGKQ 317 + I +P +L TK + Sbjct: 288 RKIYIPFELVTKANLAEF 305 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 139/344 (40%), Gaps = 39/344 (11%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEM-------------------------TIGAI 36 T+M+ R L +++ +L AL A +K + IG Sbjct: 7 KTEMKKKRALRILSLILLCALTFTACKKNVGTPEDNAASKDENTEEKDKDEQESWKIGFS 66 Query: 37 YLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSA 95 +D Y+ + +++ +LI + + D +++ + ++ ++AIILS Sbjct: 67 GIDMENPYFLTLESAIKEEVD--GKNCELIVKDPKTDPDMQASQIQEMIDEGINAIILSP 124 Query: 96 VSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFI 155 V + ++ EA + ++ +T + + YV AY+ D G G I Sbjct: 125 VDWEKITPSLEALKEADVKIVNVDTQVKEMD---YVDAYIGSDNYNAGVLCGE----DLI 177 Query: 156 ANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVA-NQEGTVLDKAISVGEKL 214 D K+A++ C +R GFEE L G +IVA K++ +K+ Sbjct: 178 KRCPDGGKVAILECPTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQKI 237 Query: 215 IISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ-VLKAVV 273 + D+ AIM + +GA A+ + G+I ++G D + +I +EL+ + + V Sbjct: 238 LSENSDIVAIMCGNDQMAVGAKTAMNVA-EQGQILIYGVDGSPDIKKELKKTENQIAGTV 296 Query: 274 DISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 S MG L ++N + D EK I+ + + + Sbjct: 297 AQSPISMGKDAANTVLNILNGK-DYEKEIKENVFMINQENVDMY 339 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 63/321 (19%), Positives = 120/321 (37%), Gaps = 18/321 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQ 63 M+ M+ LLG+A A T+G + +R G+ D +K+ V Sbjct: 1 MKKFIIGAAMSVLLGTAAHAE------TVGVSMALFDDNFLTVLRNGMLDYSKELK-GVT 53 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L +AQ D++K+ + + +A VDAII++ V + ++ + A++A IP++ N Sbjct: 54 LQVEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPV 113 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGF 182 A++ D G + ++ E + + R + Sbjct: 114 NVDSLPDGQAFVASDETVAGTLEAKEVCRLL----GGKGNAVIMMGELSNQAARMRTQSA 169 Query: 183 EEVLK-SRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 ++VLK G +V Q + + + S + NA++ + +GA++A++ Sbjct: 170 KDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALK 229 Query: 241 NQNQAGKIAVF-GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + K V G D T + ++ L V G LK++ E Sbjct: 230 AAGKDMKSYVVAGVDATQDALAAMQAGD-LDVTVFQDAAGQGKGALDAALKLVKGDK-IE 287 Query: 300 KVIQVPIDLYTKTEDGKQWLA 320 K + +P L T Sbjct: 288 KKVYIPFQLVTPENVKDYVAK 308 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 119/295 (40%), Gaps = 15/295 (5%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQV 62 + L L A +G L +Y + +G+++ A ++ Sbjct: 8 RRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQ--KL 65 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 + + D++++ ++ + V AI++ G + RA++A IPV + Sbjct: 66 TVRLDAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRA 125 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 + V +++ D + G+ G AA + ++A+I+ + ++R +GF Sbjct: 126 KEGA----VVSHIASDNVAGGRLAGEYAAKRL----NGRGQVAIIDQPYIQSVIERVRGF 177 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 EE LK P ++VA G V D+++ E L+ S L+A+ + + G V A+ Sbjct: 178 EEALKP-YPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEA 236 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQ-VLKAVVDISGKKMGNAVFAQTLKVINKQ 295 + G I V G D + E + + + L+A + ++G + Q Sbjct: 237 AGRKG-IFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQ 290 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 119/316 (37%), Gaps = 19/316 (6%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 + R L + L G A+ E IG + + + A V+ Sbjct: 2 RQHNLRILFFLLVLWGVAVACSRREARFRIGVSQCSEDEWRRQMNSEILREAHFYE-DVE 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + A D +++ + L+A VD +I++ + V A GIPVI + I Sbjct: 61 VDIRTAVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKI- 119 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGF 182 + +AY+ D E GK +G A+ Q + I+ V R +GF Sbjct: 120 ---LSDKYTAYVGADNYEIGKAVGEYVANVLH----GQGDVVEISGLVGSTPAVDRHQGF 172 Query: 183 EEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + + + PG +++A ++G L KA + L+ P ++ + ++ GA A Sbjct: 173 VKAISA-YPGIRLLAVEDGAWLQLKAGEKMDTLLSRFPHIDLVYAQNDRMAAGAYAAAAR 231 Query: 242 QNQAGKIAVFGSDMTTE---IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + + G D + +++ ++ + +G G+ V + ++N + D Sbjct: 232 EGREKDMRFIGIDALSGKDYGVEKVLAGELDATFIYPTG---GDRVMQIAMDILN-KRDF 287 Query: 299 EKVIQVPIDLYTKTED 314 + + + + Sbjct: 288 PRETILGTSVVDRDNA 303 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 143/320 (44%), Gaps = 12/320 (3%) Query: 1 MPTKMRTTRNLLLMATLLGSALF-ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDS 58 M R L + T+L S F + A+ T + ++ Q ++ + +G QDAAK S Sbjct: 2 MLFHTGKLRLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKAS 61 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 + + N+ + ++ ++ + + V I+++A+ NG V+ A+ A IPVI Sbjct: 62 GKDLVIF--NSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAI 119 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 + + +A + D +E G+ +G DY Q ++ ++ + QR Sbjct: 120 DAVLPAGPQ----AAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQR 175 Query: 179 RKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +KGFEE LKS P I +G V DKA++ E LI PDL AI A LGA+ Sbjct: 176 QKGFEETLKSN-PKITIANVVDGQNVQDKAMTAAENLITGNPDLTAIYATGEPALLGAIA 234 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 AV NQ + I VFG D+T + + + + AV+ +KMG L I Sbjct: 235 AVENQGRQKDIKVFGWDLTAKAISGM-DGGYVTAVLQQDPEKMGAEALN-ALNSITSGKT 292 Query: 298 GEKVIQVPIDLYTKTEDGKQ 317 K I VP + TK Sbjct: 293 VPKTILVPATVVTKANVDSY 312 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 112/318 (35%), Gaps = 13/318 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ +MA + A + IG + V + A S V + Sbjct: 1 MKRILLAAVMAINFSCSAGAES------IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNV 54 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 +AQ D++++ + V +A V AII++ V + + + A++A +P++ N Sbjct: 55 QMEDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPAN 114 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ-PKIAVINCE-AFEVCVQRRKGF 182 A++ D G A + + V+ + + + QR K Sbjct: 115 VDRLPETQAFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDV 174 Query: 183 EEVLK-SRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 +V+ ++V Q +A+++ + + +A++ + +GA++A+R Sbjct: 175 HDVIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSAGIQFDAVIANADEMAIGAIQAMR 234 Query: 241 NQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + V G D + + + L V G L + + + Sbjct: 235 SAGLPVKDYIVAGIDGGRDGIELMRQGY-LDVTVFQDAAGQGAGALDTALMLARGKKT-D 292 Query: 300 KVIQVPIDLYTKTEDGKQ 317 + I VP L T T Sbjct: 293 RTIWVPFQLITPTNVADF 310 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 58/320 (18%), Positives = 131/320 (40%), Gaps = 17/320 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTI-GAIYLDTQGYYAGVRQGVQDAAKDSS 59 M + ++ A +L + + AE ++TI G++ ++ + ++ A+ Sbjct: 21 MNRREFLLTSVAAGAMVLAA--PSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQG 78 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 V + E++ Q +K++ ++ + + V+AI++S + N + + A +AG+PV+ + Sbjct: 79 VNLT--ESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTID 136 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQR 178 ++ + A++ D ++ G A A +A + K+ + + R Sbjct: 137 RRVDGVQG---ILAHVGADNVKGG----EAEASAMVAAFPNGAKLFHLQGQPGAGPAIDR 189 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 KG VL QI+ Q +A+SV E + + +AI+ + LGA++ Sbjct: 190 NKGVHNVLDPLKDKYQIIFEQTANFARAEALSVTEAGLAANGKPDAIICANDDMALGALE 249 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ-A 296 A +N + ++G D E + + + L V+ + + + Sbjct: 250 ACAARNFTD-VKIYGFDALPEALVAVRDGK-LAGTVEQFPGQQSRTAVQIAVAYAKNKTE 307 Query: 297 DGEKVIQVPIDLYTKTEDGK 316 EK++ + + K K Sbjct: 308 PKEKLVLLTPIVIGKDNLDK 327 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 117/299 (39%), Gaps = 23/299 (7%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILS 94 +L Y+ G G+Q AAKD V+ Q DI++E T + ++A++ I+++ Sbjct: 61 VTFLSGIEYWKGCFAGMQAAAKDLGVKAVFTGAP-QYDINQEVTTMQQVIAKHPAGILVT 119 Query: 95 AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYF 154 +++ + + +A AGIPVI +++ Q AYL +E G+K ADY Sbjct: 120 SINAQAMTPVINQAIAAGIPVISFDSDAPQSKR----YAYLGTSNIEAGQKA----ADYL 171 Query: 155 IANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEK 213 ++AVI QR +GF++ + ++ PG ++VA Q G K V Sbjct: 172 GQALGGHGEVAVITTPGELNLDQRVQGFKDEMAAKYPGVKVVAVQNGNSDQIKTAQVTSA 231 Query: 214 LIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV 273 L+ + P+L I GA AV+ + G + + D +++ Q+ A V Sbjct: 232 LLQTYPNLAGIFCTEADEGTGAATAVQEAGKTGTVKIVSFDTDKATLNAIKSGQI-TATV 290 Query: 274 DISGKKMGNAVFA------------QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 MG + + + + TK+ Sbjct: 291 AQGTWNMGFWGLMDLFAIHHNLVHPVANWQQSGVDPVPPEVDTGVTIVTKSNVNAYLQQ 349 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 136/338 (40%), Gaps = 28/338 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA----------EKEMTIGAIYLDTQ-GYYAGVRQ 49 M + T + K++TIG + Q ++ ++Q Sbjct: 1 MKARATTRIVIATGVAATMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQ 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 V AK ++V + ++A+GD + + + ++R V AII + V+ A+ Sbjct: 61 SVTAEAKKKGIKVIV--SDARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAAN 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 A IPV+ + + +++ D + + LGN Y + + ++A++ Sbjct: 119 RAKIPVVTVDRNPPGEPGK----SFIASDSVAAARTLGN----YVVKESGGKGQLAILQG 170 Query: 170 E-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGE 227 + V R+KGF + LK PG ++V+ Q DKA SV + ++ + P ++ + G+ Sbjct: 171 QIGTTPQVDRQKGFGQALK-NAPGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDILWGQ 229 Query: 228 SGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQ 287 + LGA +AV+ K + G D + + V A + +KMG Sbjct: 230 ADAMALGAAQAVKASGSKKKHLIVGFDGDIAGLKAVRRGTV-DATMVQQTRKMGRMSVNT 288 Query: 288 TLKVINKQADGEKVIQVPIDLYTKTEDGK--QWLATHV 323 + +I + P L T + K Q++ TH Sbjct: 289 AVDIIKGKK-VPAQQLQPAFLLTSKDKKKATQFINTHP 325 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 117/321 (36%), Gaps = 16/321 (4%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMT---IGAIYLD-TQGYYAGVRQGVQDAAK 56 M LLG A+ ++ GA Y+ Y+ + +G+++ + Sbjct: 1 MKIGTGLLILTAGAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVE 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 + L+ + D K++ + ++ + + L+ V + EAG+ +I Sbjct: 61 ANGD--ILLTRDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGII 118 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV 176 +T + + V + + D + G+ + D+ KI +++ Sbjct: 119 NVDTVVKDRDS---VISIIETDNYQAGQLCALDMM-----KRKDEAKIVILDNPIQTSIT 170 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 R +GF + + + ++ + V L+ + I+G + LGA+ Sbjct: 171 NREQGFLDTIADNHNYQVVYREAAAGEIEVSSHVMADLLRRDISFDVILGGNDPTALGAL 230 Query: 237 KAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A++ + + ++G D + + + + + + S + +G + ++ + Sbjct: 231 AALQQARREEGVLIYGIDGSPD-FKAILDVGYVTGTSAQSPRSIGRKAAETAYRYLDGE- 288 Query: 297 DGEKVIQVPIDLYTKTEDGKQ 317 EK I +P + T+ + Sbjct: 289 PVEKYISMPSTMITRDNLHEF 309 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 135/341 (39%), Gaps = 39/341 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA-------------------EKEMTIGAIYLDT- 40 M TK + AT L + A ++T+G Sbjct: 1 MKTKNVKCFFAAIAATTLVVGMVAGCGNTVKADEVSKEESSGSKEIGPDLTVGFAQSGNP 60 Query: 41 QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 + + + +Q +A + V I T+A D++ ++ ++A+++D ++++ + + G Sbjct: 61 NPWMVALTESMQQSADEYGVN--YIYTDANDDMATHVANIEDMLAKDLDILVIAPMEDTG 118 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID 160 + A+E G+PVI ++ + + D G++ A+ D Sbjct: 119 LEAVLDEAAEKGVPVI-----LSARTTQGEYVTTVYSDQAWEGERC----AELIGEKIPD 169 Query: 161 QPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIS-T 218 + + E R KGF +V+ + P +IV Q +A+ ++ + Sbjct: 170 AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTANFSRQEAMDAMANILQAKG 229 Query: 219 PD-LNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVDI 275 PD ++A+ + LGAV+A+++ I V G D E + +++ ++L V Sbjct: 230 PDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELVKSGEML-GTVQC 288 Query: 276 SGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 S K G VF K+++ + +K VP + TK + Sbjct: 289 SPKH-GPTVFEVIQKILDGET-VQKETIVPDQVITKENVDE 327 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 115/292 (39%), Gaps = 14/292 (4%) Query: 26 AAEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 + TIG T +Y ++ +++ AK+ + + +A GD +K+ V + Sbjct: 54 TKGEAKTIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQ--DAAGDANKQLGQVQDFI 111 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 + VDAI+++ + GS + A +AGIPV + + K ++ D + G+ Sbjct: 112 TKKVDAIVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP-----VTHVATDNKKGGQ 166 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTV 203 + + K + +AVI E CV R GF + LK P ++V Q Sbjct: 167 LAAEYVVNNILTEK--KGNVAVITYSEIESCVDRETGFTDYLKENAPDIKVVDVQNYSGD 224 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 KA V + +++ +++ + A +GA+ ++ N A KI G D E E+ Sbjct: 225 QQKAADVMQNMLLKNDNIDVVFCVGDPAAIGALSSITAANAATKI--IGYDGNPEGVAEI 282 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 + A V +G K + + + I + + Sbjct: 283 KKGGNWVADVAQDPAGIGKTTLEAIKKHLEGEK-VDSEILIAPYIIDAKNAK 333 >UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8 Length = 349 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 126/329 (38%), Gaps = 19/329 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQ-- 61 M LL+A +L A +E TI I + ++ VR+G + A D + Sbjct: 1 MARVHLYLLLAAVLPIASGCARRGEEYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDG 60 Query: 62 ----VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 V + D ++ VD VA A++L+ + V+RA++AG+PV+ Sbjct: 61 TRVRVIFDGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVI 120 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCV 176 ++ ++ + Y+ D G+ G + D+PK+ + + Sbjct: 121 IDSGLDDPN---HFVKYVATDNYNGGRLAGRHLIRELQRRRKDKPKLILFRYAVGSQATE 177 Query: 177 QRRKGFEEVLKSRVPGAQIVANQ--EGTVLDKAISVGEKLIISTPD-LNAIMGESGGATL 233 R +GFE+ +K R PGA+ ++ G D A+ LI+ + ++ I + + Sbjct: 178 DRERGFEDEVKERCPGAEWLSTDKYAGATRDSAMREAGPLILQFGNQVDGIFAPNESSAS 237 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 G +R Q K+A+ D + + Q ++ V+ + +MG ++ + Sbjct: 238 GTADVLRAQGLNQKVALMAFDGSKPLLQSIQQGDVI-GSILQDPYRMGYLSAWYCVRHLR 296 Query: 294 KQA----DGEKVIQVPIDLYTKTEDGKQW 318 + E L T + Sbjct: 297 GEDMNNGRREMSEGTGEYLITAENVTSAF 325 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 119/333 (35%), Gaps = 37/333 (11%) Query: 12 LLMATLLGSALFARAAE-----------------KEMTIGAIYLDT-QGYYAGVRQGVQD 53 L A +L A A AE + IG D Y+ GV+ Sbjct: 4 LSAACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRA 63 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 A+++ ++V + + + ++ + L+ + + A+I++ V + T+ A I Sbjct: 64 GAEEAGIEV--VIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGEKI 121 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAF 172 PV+ + Y++ + E G+ + ++ VI Sbjct: 122 PVVVADIGTEGD-----YDGYILSNNYEGGRLAAEHVVEKLGGTPGPH-QVGVIELHAGS 175 Query: 173 EVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGA 231 V +R GF + L +IV++ +G D + + ++ + P+L+ I + + Sbjct: 176 VVGEERVSGFVDRLGEE-ENFEIVSSLDGNDTVDGGFTAAQDMLSANPELDVIYAANDDS 234 Query: 232 TLGAVKAVRNQN--QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 +GA +A+ A + G D + +E V+ V G L Sbjct: 235 AVGASRAMETAGVSVANGFTLIGFDGSDPALDLIEQG-VMSGTVAQDPFGQGQKAVETAL 293 Query: 290 KVINKQADG-----EKVIQVPIDLYTKTEDGKQ 317 ++N + G K I P+++ T + Sbjct: 294 ALLNGEDPGYSDEATKTIYFPVEMVTAENVAEF 326 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 126/321 (39%), Gaps = 20/321 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M ++ L+ +L ++ FA A + + ++ +++G++D AK V Sbjct: 1 MNKYLKYFSGTLVG-LMLSTSAFAAAEYA----VVLKTLSNPFWVDMKKGIEDEAKTLGV 55 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V + + ++GD + + L +N I + +S V RA + GI ++ + Sbjct: 56 SVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDE 115 Query: 121 CINQKGVD---KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCV 176 I+ + V A++ D + G K + D A + ++A+I Sbjct: 116 KIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGA---EGGEVAIIEGKAGNASGE 172 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 RR G E K + ++VA+Q KA+ V ++ P++ AI + +G Sbjct: 173 ARRNGATEAFK-KASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGV 231 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 +AV N + GK+ V G+D E + +E Q + A V + +G + Sbjct: 232 AQAVANAGKTGKVLVVGTDGIPEARKMVEAGQ-MTATVAQNPADIGATGLKLMVDAEKSG 290 Query: 296 A-----DGEKVIQVPIDLYTK 311 + V L T+ Sbjct: 291 KVIPLDKAPEFKLVDSILVTQ 311 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 119/314 (37%), Gaps = 21/314 (6%) Query: 22 LFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQ---DAAKDSSVQVQLIETNA--QGDISK 75 E E+ +G++ Y+ +++G + K++ + L +A +GD Sbjct: 62 GAMPKVEGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQG 121 Query: 76 ESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYL 135 + + V+ ++ + A++LS +S+ V +A + IPVI N G+ K ++ Sbjct: 122 QLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVN-----DGIIKNADIFV 176 Query: 136 VGDPLEFGKKLGNAAADYFIANKIDQPKIAV-INCEAFEVCVQRRKGFEEVLKSRVPGAQ 194 + G AA++ + ++A+ I QR GFE +KS G + Sbjct: 177 GPKAIMNG----ELAAEWISKKIGGEGEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVK 232 Query: 195 IVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS 253 IV Q KA + E I P+L AI + LG +AV + I V G Sbjct: 233 IVEKQNADWDRAKAKDLAEIWIKKYPNLKAIFCNNDVMALGVQEAVNASKR--DILVVGV 290 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 D E + + + + A VD G L+ + +VI P L T Sbjct: 291 DGIKEAYESIRKGE-MDATVDSFPLYKGQIAVEMALRSL-GGQQLPRVIWTPQALIDSTN 348 Query: 314 DGKQWLATHVDGLP 327 + P Sbjct: 349 VNEPSEKIINWKEP 362 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 124/311 (39%), Gaps = 25/311 (8%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIE----TNAQGDISKESTF 79 A + I ++ + ++ + QGVQ A++ ++ + N GD+ K+ + Sbjct: 72 GTATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQIST 131 Query: 80 VDTLV-ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGD 138 + L+ ++D ++++ + +A++ GI VI +T I+ + ++ D Sbjct: 132 ILELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ----ILTFVTFD 187 Query: 139 PLEFGKKLGNAAADYFIA--NKIDQPKIAVINCEAFE-VCVQRRKGFEEVLKSRVPG--A 193 E G+ LG + ++ I ++ E ++RR+GF E LK Sbjct: 188 NFEGGQILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSL 247 Query: 194 QIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252 +I+ + KA + + + P ++ IM +GA +AV+ N++G I + G Sbjct: 248 EILDLKSADWETKKAKMITQAWLEKFPTIDVIMAADDQMAVGASEAVQEANKSG-IIITG 306 Query: 253 SDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD-------GEKVIQVP 305 D T ++ Q+ A ++ + + + + + K+ + Sbjct: 307 FDGTPYGLNAIKTGQI-DATINQLPRTQISLITQLMINSLEKEQTTLPLCQLIGQEQTEN 365 Query: 306 IDLYTKTEDGK 316 L T+ + Sbjct: 366 SLLITQDNINE 376 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 120/336 (35%), Gaps = 34/336 (10%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE----------MTIGA-IYLDTQGYYAGVRQ 49 M + L M L + +K + + I ++ Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 G + AK+ + L+ + QGD+ + + + + V + VDAI ++ + + + Sbjct: 61 GFEKQAKEYGWEATLL--DPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVN 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 EAG+PV C + + V + L D ++ G A A+ + + + + +I Sbjct: 119 EAGVPVFCVDRRGEGE-----VVSTLETDNVKAG----EAMAEQLVKDYGEDVDVLIIQG 169 Query: 170 -EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL--DKAISVGEKLIISTPDLNAIMG 226 + + R +G + VL + IV + A++ + + + PDL+ I Sbjct: 170 VLSDTPTLDRTQGVKNVL-EKYENITIVGEPSAGEYSNEAALATTKNFLETNPDLDVIFT 228 Query: 227 ESGGATLGAVKAVRNQNQAGK------IAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + G V A++ + GK + ++ D E+ + +E+ V + Sbjct: 229 CTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTV-DGTFSQYPIQF 287 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 G ++ EKV D+ T K Sbjct: 288 GIDTVKSMKTYLDGGKVEEKVYYNG-DVVTDENIDK 322 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 121/318 (38%), Gaps = 15/318 (4%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQV 62 + + LL+ + +L A+ A A+ ++G Y+ + Q + AK+ + V Sbjct: 20 RNAMIKQLLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDV 79 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 ++I ++ D++K+ +D +A VD I+L+A + ++RA AGI V+ + Sbjct: 80 KVITVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAA 139 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGF 182 A + + ++ G+ D A +I + N + R G Sbjct: 140 VGAD------ATVQTNNVQAGEIACQYIVDKLGAA---GGQIIIQNGPQISSIIDRVSGC 190 Query: 183 EEVLKSRVPGAQIVANQEGT--VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 + L + P I+++ + D+ + + + + ++A+ G+ A + Sbjct: 191 RKSLANN-PKITILSDDQNGKCSRDEGMKIMQGHLTRHRKIDAVFTVCDPQATGSDLAAQ 249 Query: 241 NQNQAGKIAVFGSDMTTEIAQELENN-QVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + + + D +I + + ++A M +++N + Sbjct: 250 QFGR-NEFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKKPDN 308 Query: 300 KVIQVPIDLYTKTEDGKQ 317 +I +P L TK Sbjct: 309 PMILMPSTLLTKDNVADY 326 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 119/330 (36%), Gaps = 29/330 (8%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGA-IYLDTQGYYAGVRQGVQDAAKDS--SV 60 + LLL+ T+L A + +G I G+ G+ Q A K Sbjct: 1 MKKVLIFLLLIVTILSFA--------KFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDP 52 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V+ A+ S++ V L+A+ +DA++++ + +A GI I + Sbjct: 53 DVEFYLVTAKE-PSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDR 111 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 IN + + Y+ GD +G G A+ + + VI + +R + Sbjct: 112 GINSEE----YNVYIAGDNYMYGYLAGKYIAE----KLGGKGNVVVIEGIPSTINTERVE 163 Query: 181 GFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 F++ L+ P +I+A Q G +KA + + L+ P+++A+ G + A+ Sbjct: 164 AFKKALEP-YPNVKIIAQQPGYWSREKAFEIMQTLLTKFPNIDAVWTGDDDMLHGVLLAL 222 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ---- 295 + + I + G I + + + L V M + + + + Sbjct: 223 KQAGRDKNIVLVGGACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMALKGEHLNG 282 Query: 296 ---ADGEKVIQVPIDLYTKTEDGKQWLATH 322 + I + + TK + Sbjct: 283 FYQRGIPRKIILSTETVTKENAKDYYFPES 312 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 127/332 (38%), Gaps = 27/332 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALFAR-------------AAEKEMTIGAIYLD-TQGYYAG 46 M + + L A+ + + + IGA Y+ +Y+ Sbjct: 1 MEKPKSFAYIIFCLTICLAFAIGSNYLINTTTQSNMIYNSTEPRKIGATYMTYNNTFYSV 60 Query: 47 VRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVR 106 + + + K+ QLI ++ + K+ + L+ + VDAI+++ V G +++ Sbjct: 61 INEEISRILKEHGD--QLIALDSAMSLKKQKEQIHYLIEQQVDAIVIAPVDYEGLEDSLK 118 Query: 107 RASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAV 166 A IPVI +T + +K ++ +V D + G + D I + Sbjct: 119 EAYRNRIPVIVVDTEV---KHNKNITYSIVSDNYDAGVQCAKDMMRKL-----DHANIVL 170 Query: 167 INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIM 225 + R KGFE+ ++S ++V E L+ A+ E I + + +M Sbjct: 171 LQHSTTRSGYLRIKGFEDTIQSN-ENYKVVKRMECDGQLEVAMPKMESFIEEGIEFDVVM 229 Query: 226 GESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVF 285 + + +GA+ A+ + N V+G D T E + + + + A V S K G Sbjct: 230 CLNDPSAMGAMAALSSNNILKDKYVYGIDGTPEAKEMVVEGK-MAATVAQSPKTFGKKAG 288 Query: 286 AQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 K+ +++ K P+ + TK Sbjct: 289 EVIYKLFSQETIKNKNEMSPVQIITKENVQDY 320 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 115/291 (39%), Gaps = 14/291 (4%) Query: 26 AAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 AA I + T ++ + +G + A K+ + + + + I ++ ++ L+ Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLI 103 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA---YLVGDPLE 141 DAI+++ ++ A EAGI +I + ++ + + A ++ D + Sbjct: 104 RMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEK 163 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQE 200 + A + A++ + + QRR G E + P ++VA + Sbjct: 164 AAYESAGFIAREIHK----PAQAAILEGIRSADNSRQRRVGAERAFREN-PLIRLVARES 218 Query: 201 GTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 D+ V +L PD+ + + LGA++ ++ + G + V D E Sbjct: 219 ANWKIDEGRDVTRRLFSDHPDITLLFCANDMMALGAIQFLQESGRYG-VKVAAYDALEEA 277 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 + + + + ++ V+ + G +V+N +A +V+ V L T Sbjct: 278 KRAILSGR-MEVTVNQQAAEQGYQGIILASRVLNGEA-VPEVVLVETSLVT 326 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 128/305 (41%), Gaps = 14/305 (4%) Query: 28 EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSS----VQVQLIETNAQGDISKESTFVDTL 83 + + +G + YY V GV++ +++ + ++Q + ++ Sbjct: 68 NRPLKLGFLPTAMDTYYQRVLAGVKEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAW 127 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + +DAI ++ +E ++RRA+EAGIPV +N+ + Y + + D + G Sbjct: 128 INDGIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPFAD---NPYYVSDVGYDQSDGG 184 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV 203 + D + + KI ++ QR KGF E++ S+ P +IVA Q Sbjct: 185 RAQAQWIVDTYGDK---EVKIGILEGLPGPHTSQRMKGFNEII-SKHPNFKIVAQQPAGW 240 Query: 204 -LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 + +SV E + + PD+ ++ LG ++A++ + GK+A+ G + E Sbjct: 241 VRAQGLSVTENMFTANPDIEVLVALYDEMALGGLQALKAKGLNGKVAIVGYENMKEANAA 300 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH 322 + A VD K+ G + + + K K I V +Y T K + T Sbjct: 301 ILTGD-FSATVDTGAKEEGRNIVRAVDEFLMKGNPLPKKIFVSPKVYDATNI-KTFDQTD 358 Query: 323 VDGLP 327 D +P Sbjct: 359 YDYVP 363 >UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridia RepID=A4XG54_CALS8 Length = 345 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 55/350 (15%), Positives = 115/350 (32%), Gaps = 41/350 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA------------------RAAEKEMTIGAIYLDTQG 42 M ++ L L+ S +A + + KE + Sbjct: 1 MKKNFYKYLSIFLAIALIVSLAYALVPNSKDVTQASSGNPKLKGSPKEEYYMVTFASGIE 60 Query: 43 YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS 102 Y+ G +G++ AA V+ Q D++++ T + ++A+ I+++ + + Sbjct: 61 YWKGCFKGMKAAADLYGVKAIYTGAP-QFDVNQQVTVLRQVIAKKPAGILVTCANPDALK 119 Query: 103 RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQP 162 + A + GIPVI ++ + + G AA Y + Sbjct: 120 APIDEAIKKGIPVITFDADSPKSLRYSVLET--------GNYNAGAMAARYLGKLLGGKG 171 Query: 163 KIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDL 221 ++ + A QR++GF + LK PG ++V+ KA ++ + P++ Sbjct: 172 EVGISTVAAQLNHEQRKQGFIDTLKKEFPGIKVVSIVNDENDSTKAARGVAAMLQAHPNI 231 Query: 222 NAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMG 281 I +G A++ N+ GKI + D ++ V+ A + MG Sbjct: 232 KGIFCTDAPGGVGVATAIKEANKVGKIKIVSFDTDKGTLDLIKQG-VIDASIAQGTWNMG 290 Query: 282 NAVFAQTLKVINKQA------------DGEKVIQVPIDLYTKTEDGKQWL 319 + + + + TK + Sbjct: 291 FWGMTFLFYLKHGIVNPVDNWKKFGINPLPPYVDTGTMVVTKQNVDAFYK 340 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 63/313 (20%), Positives = 136/313 (43%), Gaps = 14/313 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLI 65 T ++ +A L S + + + TIGA+Y+ Y+ + + ++ + ++ Sbjct: 23 ATICIVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLE-- 80 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 ++ D ++ V+ + VD I+++AV ++ +A +AGIPVI + I + Sbjct: 81 TRDSGMDAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNR 140 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV 185 +V +V + + G++ + + KI + + + R KGF+E Sbjct: 141 ---SFVDGTVVSNNYQAGEQCAKDLM-----KRRKKGKILFLVQSENKSAIDRIKGFKET 192 Query: 186 LKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 L+ + V E L+ + + EK++ T D++ +M + + +GA+ A+ ++ Sbjct: 193 LEKAGWKYENVGELECQGQLELSQPLVEKVLNKTKDIDVVMALNDPSAMGAMAALDAEHM 252 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 + V+G+D + E + N+ + A S + G K+++ + EK V Sbjct: 253 LSDVLVYGADGSPEAKTMIYENK-MAATSAQSPRTTGKKTVEMLYKILDGKKT-EKQCIV 310 Query: 305 PIDLYTKTEDGKQ 317 P+ L TK Sbjct: 311 PVSLITKDNINDY 323 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 127/331 (38%), Gaps = 26/331 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSAL-------------FARAAEKEMTIGAIYLDTQG-YYAG 46 M + +L+ + L AR GA Y+ T +Y Sbjct: 1 MNKNYKKIVIFILLIFTVVFILINLKVLEGNGGENSARQIGSRKKFGATYMTTNNRFYEI 60 Query: 47 VRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVR 106 + ++ + + L+ +A D +K+ + + V AI ++ V + Sbjct: 61 INDEIRSVVESNGD--ILVTRDAALDKNKQMQQIYEFIKLKVKAIFINPVDWKQIKPALI 118 Query: 107 RASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAV 166 A AGIPVI +T + DK V+ ++ D + G + + I + Sbjct: 119 AAKNAGIPVIVVDTPVYD---DKLVACTVISDNYDAGVQCAKYLM-----KSKSKANIML 170 Query: 167 INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMG 226 I + + R KGF + + + + A LDK +S+ + LI +++AIM Sbjct: 171 IEHSKAKSGIDRIKGFVDTIGASKQYKIVAAGDSEGQLDKTMSLVDDLIKKHTNVDAIMA 230 Query: 227 ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA 286 + + LGA+ A++ GK+ VFG D + E + + + A K+G+ Sbjct: 231 LNDPSALGALAALKENGLLGKVMVFGVDGSPEAKTMIHDG-FMTATSAQFPNKIGHIAAE 289 Query: 287 QTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + ++ + VI VPI L +K K Sbjct: 290 KAYDILKGKRLKRDVI-VPISLISKENLLKY 319 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 126/317 (39%), Gaps = 19/317 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQ 63 M+ + ++L+A L S TIG + +R + AK + VQ Sbjct: 1 MKYLKRIVLVAALGCSTSVLAE-----TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQ 55 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 +A+GD+ +++ V ++ VDAII+ V+ G+ + ++AGIP++ N Sbjct: 56 FE--DARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPG 113 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV-CVQRRKGF 182 + V ++ D + G A Q +AV+ + +QR K Sbjct: 114 DSKLPAGVV-FVGSDEKQSGTLQMEELARL----ANYQGNVAVMIGNLTDAGALQRTKDV 168 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 E+V+ + P ++V Q + + + I + ++ + + +GA+ A++ Sbjct: 169 EQVVA-KYPKMKVVQKQSANYSRSEGMDLMLNWITNGESIDIVAANNDEMAIGAIMALQQ 227 Query: 242 QNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 + G K+ V G D T + + L + + ++ V G A ++I + Sbjct: 228 AGKQGSKVLVGGIDATPDGLKALSSGK-MQVTVFQDAVGQGKASVDVAQRMIKGEKLDP- 285 Query: 301 VIQVPIDLYTKTEDGKQ 317 +P +L T K Sbjct: 286 YYWIPFELVTPANMQKY 302 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 115/344 (33%), Gaps = 40/344 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE-------------------------KEMTIGA 35 M + + ++A+ L + K Sbjct: 1 MKKMLACLLSFTILASTLTGCTVGASNATAAENQAPAETQASNEPAQAADPSVKTYNFVF 60 Query: 36 IYLDTQ-GYYAGVRQGVQDAAKDS-SVQVQLIETNAQGDISKESTFVDTLVARNVDAIIL 93 I Q + + G + AA ++ ++ I + ++ V+ + DAI++ Sbjct: 61 IVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITDGADAILI 120 Query: 94 SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADY 153 + G + +A+ AGIP+ N K V ++ D G +LG A + Sbjct: 121 TPADSTGIVPAIEKANAAGIPIAT----PNTKAYGGDVLTWIGVDNYTVGYELGTALCEA 176 Query: 154 FIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVG 211 K+ +I +R G+ + K PG +++ +Q +K ++V Sbjct: 177 LE----GTGKVVLIEGTAGNSTSTERVDGYLDAFK-NYPGIELLDSQPADFNREKGMTVM 231 Query: 212 EKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKA 271 E + P+++ + + T+GA++A + + ++ D+ + ++ +L Sbjct: 232 ENFLQRYPEIDGVGSINKDMTMGAIEACKAVGRDKEMVQVTFDVDNDCLDAIDAGDILI- 290 Query: 272 VVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 K L N + +P+ L TK Sbjct: 291 TGAQEEKSQIANAIYACLLACNGYKVAPEQ-YIPMTLVTKDNTN 333 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 117/314 (37%), Gaps = 15/314 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 M+ + L +LG E I + ++ +++G+++ AK V V Sbjct: 1 MKRFKTLKSCLAILGLVCSVSVYSAEY--AVILKTLSNPFWVAMKEGIENEAKALGVDVD 58 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + ++GD + + L+ +N I + +S +A GI ++ + I+ Sbjct: 59 IFASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKID 118 Query: 124 QKG---VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 K V A++ D + G K D + + ++A+I RR Sbjct: 119 IKNLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGS---EGGEVAIIEGKAGNASGEARR 175 Query: 180 KGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 +G EV + ++VA+Q KA+ V ++ P+L A + +G +A Sbjct: 176 RGAREVF-VKSSSIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYVANDTMAMGVAQA 234 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 V N + GKI V G+D E + + + L A + +G + Sbjct: 235 VINAGKQGKILVVGTDGVPEARKMVSE-RKLTATIAQDPAMIGAKGLKLLVDAARAGKQI 293 Query: 299 EKVIQVPIDLYTKT 312 + V + T Sbjct: 294 P--VDVEPKIETVD 305 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 125/334 (37%), Gaps = 28/334 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGV------RQGVQDA 54 M K + R + + L + AA + IG + + Sbjct: 1 MKYKNKIMRLIAVFTMLFAFVGTSYAA--KYKIGISVPSADHGWTAGLLWWANKAAADLK 58 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 AK+ ++ ++ +++ SK+ V+ L+ + +DA+++ + + + A + GI Sbjct: 59 AKEKDIEFFVVASSSG---SKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIY 115 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV 174 + + + + ++ GD G+ A + + + VI + Sbjct: 116 TVVVDRELAHPAQN----VFIAGDNAGLGRVG----AQWLAKEMSGKGNVVVIEGLQIPI 167 Query: 175 CVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATL 233 QR F +V+ P +I+ +Q G KA+SV E + P ++A+ + Sbjct: 168 NKQRVDAFNDVIAG-YPNIKILDSQPGDWSTQKALSVMENFLQKHPKIDAVWCQDDDMLK 226 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN-QVLKAVVDISGKKMGNAVFAQTLKVI 292 G +KA+ + V G + +I + +++ ++++A V S M + A + + Sbjct: 227 GVLKAIEESGRTDIKTVLGGAGSKDIIEMIQSGNKMVRATVTYSP-SMIASGIALAVHGV 285 Query: 293 NKQADG-----EKVIQVPIDLYTKTEDGKQWLAT 321 + G + + DL TK + Sbjct: 286 KHEKLGYLYHEPSRVILGADLVTKENAADYYFKD 319 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 110/306 (35%), Gaps = 12/306 (3%) Query: 9 RNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIET 67 L+ + +LG + + +G I + Y+ +R+ Q A Q+ + Sbjct: 14 AALMAGSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAG 73 Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 GD + T ++ +V + V I+++ S G +++A +AG+ VI +T + + Sbjct: 74 AFDGDNEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDA 133 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEE-- 184 V A D G G ++ +++ V R GF E Sbjct: 134 ---VDATFATDNKAAGVAQGKWVKAALGNTPP---QVVMLDGTPGGTVDTFRHDGFLEGF 187 Query: 185 VLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 L P + KA + E L+ P +NA+ + A GA +A++ + Sbjct: 188 GLTDNSPEI-VGQENTNGDQTKAQTAMENLLQRAPGVNALYTINEPAAAGAYQAIQAVGR 246 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 A ++ + D + +++ ++ A V KM +K Sbjct: 247 ADQVTIGSIDGSCTGVADVKAGKI-GATVMQFPAKMAELGVQAVVKFAEDGTKPSGFNDT 305 Query: 305 PIDLYT 310 +L T Sbjct: 306 GSELIT 311 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 114/320 (35%), Gaps = 26/320 (8%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 + + +L L K+ IG + + Q +Q A V Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCSEDIWRDKLNQELQ-TATYMEDGVT 59 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + +A + ++ ++ + VD +I+S + + V +A E GIPVI ++ + Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 K +A++ D +E G+++G+ A + I ++ + ++R +GF Sbjct: 120 GK-----YTAFIGADNVEVGRQMGDYVARQLDYHGN---VIELMGLKGSSPAIERHRGFI 171 Query: 184 EVLKSRVPGAQIVAN-QEGTVLDKAISVGEKLIISTP-----DLNAIMGESGGATLGAVK 237 E + SR PG ++V + Q + + + ++ +GA Sbjct: 172 ERI-SRYPGIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAMGA-- 228 Query: 238 AVRNQNQAGK-IAVFGSDMTTEIAQELE--NNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 R K G D ++ + VL A + G+ V + ++N Sbjct: 229 --REAGLLPKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR--GDLVMKLAMNILNH 284 Query: 295 QADGEKVIQVPIDLYTKTED 314 +K + L T + Sbjct: 285 -RPYQKENLLQSALVTPDKA 303 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 67/324 (20%), Positives = 132/324 (40%), Gaps = 12/324 (3%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVR-QGVQDAAKDSSV 60 RT L A + A A+K + +G + + + + ++ AA+D+ + Sbjct: 3 KLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDAGI 62 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 +++ ++AQ + + + +A+ VD I S V E+G +R A A IPV+ + Sbjct: 63 ELKF--SDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 +N K YV+ ++ D +E G+K G + K D + + + R+K Sbjct: 121 AVNTKDTSLYVT-FMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQGTVGSAPAIDRKK 179 Query: 181 GFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIS-TPDLNAIMGESGGATLGAVKA 238 GFEEV+K+ P +I+ +Q G K V E + + +N + + +GA++A Sbjct: 180 GFEEVVKAD-PKFKIIRSQTGDFTRAKGKEVMEAFLKAEGRKINVLYAHNDDMAIGAIQA 238 Query: 239 VRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 + I + D + + + L V+ S +G + +K I Sbjct: 239 IEEAGLKPGKDITIISIDAVKGAFEAMMAGK-LNVTVECSP-LLGPQLM-AAVKDIKAGK 295 Query: 297 DGEKVIQVPIDLYTKTEDGKQWLA 320 K I ++ +++ Sbjct: 296 TVPKRIVTEEGIFPMETAAQEFPK 319 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 123/317 (38%), Gaps = 23/317 (7%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ +L+ L + K+ IG + + + + V L Sbjct: 3 MKQWLYILIFTLLFSACSDNNV--KKYVIGVSQCSEDIWRDKLNNELVMSTYQHD-NVTL 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 +A + + ++ + V+ +I+S + S + +A +AGIPVI ++ + Sbjct: 60 KFASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDS 119 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 K +A++ D E G ++GN + IA I +A ++R +GF Sbjct: 120 KK----YTAFIGADNYEAGYEIGNFIGQQL----DGKGNIAEICGLQASSPAIERNRGFM 171 Query: 184 EVLKSRVPGAQIVANQEGTVL-DKAISVGEKLI-ISTPDLNAIMGESGGATLGAVKAVRN 241 + LK G +++A + G + + + + ++ + + + ++ LGA+++++ Sbjct: 172 DALKD-YSGIKVIARKHGDWVKESGVMAMDSVLSQAKEPIQYVFAQNDRMALGALQSIKK 230 Query: 242 QNQAGKIAVFGSDMTT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 G I + G D + + + + + + G++V L ++ + Sbjct: 231 HKVKG-IRIVGIDALPVPGGGMENVRDGNLEASYIY---PTRGDSVMQLALNILE-KKPY 285 Query: 299 EKVIQVPIDLYTKTEDG 315 ++ + L TK Sbjct: 286 KRDNYLKGALVTKANAN 302 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 119/292 (40%), Gaps = 14/292 (4%) Query: 28 EKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 + +M IG + D + G A + V+++ +A+ D + V+ L+A+ Sbjct: 43 DGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQG 102 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VDAI+ V + V RA +AG+PV+ N ++ AY+ D L+ G Sbjct: 103 VDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE-----DAYVGSDSLQAGTIQM 157 Query: 148 NAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LD 205 A + KIA++N + + R G ++V+ + PG ++V G + Sbjct: 158 EEVAAVLK----GKGKIAIMNGQMGHTAQINRTLGNKQVV-DQYPGMEVVIEGTGGWSRE 212 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 K + E I S +A++ + +GA+ A ++ G D T + + Sbjct: 213 KGKELMESWIESGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSK 272 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + L V K G Q +K+ ++ EK+ +P + TK + Sbjct: 273 GK-LTISVFQDAKGQGQTGLEQAIKLAKGES-AEKMTNIPYETITKRNVDEY 322 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 138/323 (42%), Gaps = 22/323 (6%) Query: 1 MPTKMR---TTRNLLLMATLLGSALFARAAEKEMTIGAIYL-----DTQGYYAGVRQGVQ 52 M + + T L+ A ++ + + A + IY+ +T ++ V G + Sbjct: 1 MKSHKKEIITVAILMAAAVVIFAGILKPEATQTKKCSLIYIPKIRDNTNDFWTSVISGCK 60 Query: 53 DAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAG 112 AA++ ++++ + + +I +++ + + + DAI+ S S + S ++ A E G Sbjct: 61 MAAEEYESDLEILAPDKEENIEEQNKLLKKAIEQKPDAILFSPSSMDSSDELLKEAKEKG 120 Query: 113 IPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EA 171 I + ++ +K D + D + G+ LG A + KIA+++ + Sbjct: 121 IRITYIDSYTKEKLQDL----TVATDNVNAGRMLGEYARKLIDKDS----KIAIVSHVKG 172 Query: 172 FEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGG 230 V+R +GF E L IV +K+ + ++L+ PDL I G + Sbjct: 173 VSTAVEREQGFREGLGDYADN--IVDIVYCNSLYEKSYELAQELMRKYPDLELIAGMNEY 230 Query: 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLK 290 + +G +AV + KIAV G D + E +E V K ++ +MG +T+ Sbjct: 231 SAVGVGRAVSDAGAKDKIAVVGVDCSQEAINLMEMG-VYKGIIVQKAFRMGYIGVEETIH 289 Query: 291 VINKQADGEKVIQVPIDLYTKTE 313 ++N A EK I +L T Sbjct: 290 MLNGDA-VEKNIDSGCELVTPEN 311 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 134/329 (40%), Gaps = 22/329 (6%) Query: 1 MPTKMRTTRNLLLMATLL---------GSALFARAAEKEMTIGAIYLD---TQGYYAGVR 48 M + ++ A + G + ++ I + + ++ G+ Sbjct: 6 MKRRAGKRLIGVMTAGFVLLILILITIGVLQDSSQNKRTYKIIMVPKTIDESNDFWTGLI 65 Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 +G + A++ +++++ ++++ D ++ ++ + +N DA +++ S ++ V+ A Sbjct: 66 EGAKLGAEEFGCEIEVVGSDSEDDYEGQNRLIEESIKKNPDAFLIAPCSYTHTTEAVQEA 125 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN 168 AGI VI ++ I+++ + + D + GK+LG A + +A + Sbjct: 126 INAGIKVILVDSVIDKEIANG----VVATDNFKAGKELGTF-AKTILKPDSKIGVVA--H 178 Query: 169 CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGES 228 + +R G E L Q + + D A + EK++ P+++ ++G + Sbjct: 179 VKGSSTATEREDGIREGLGEDQNRIQDI-VYCNSSYDLASDLTEKMLKERPEIDVVIGTN 237 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 + +GA + V+ ++ V G D + E Q LE V + +V +G Q Sbjct: 238 EYSAVGAARGVKKMGMEDQVKVVGFDNSVEQIQLLEAG-VFQGIVIQKPFNIGYLGVEQA 296 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 +K I E + L TK ++ Sbjct: 297 VKAIEG-YPMEYNLDSGCKLITKENMYEE 324 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 126/328 (38%), Gaps = 16/328 (4%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSS 59 MP + + + + + + R K++ +G + + +++ A Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKI-VGFSQTENIGPWRIAETNSIKEEAAKHK 59 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + T+AQG SK+ ++ L+AR VD I L+ G + + A A IP+ + Sbjct: 60 KTYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLID 119 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQR 178 + + +V ++L D + G+++G A + I + V + R Sbjct: 120 REAAGRPGEHFV-SFLGSDFIAQGRRVGEWLAKA----TDGKASIVELTGTAGSSVAIDR 174 Query: 179 RKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIS-TPDLNAIMGESGGATLGAV 236 KGF + + P +I+A Q A+ V E +I + D+ A+ + LGA+ Sbjct: 175 AKGFRNAIAT-YPNMKIIATQTADFSRAAAVRVMENIIQAKGSDITAVYAHNDEMALGAI 233 Query: 237 KAVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 +A+++ + V D + + + L V+ + + G VFA + Sbjct: 234 QALKSAGMKPGKDVMVGSIDGQKAALEAIIRGE-LGVSVESNPR-FGPLVFATMEEYFAG 291 Query: 295 QADGEKVIQVPIDLYTKTEDGKQWLATH 322 + ++I L+ T + Sbjct: 292 KKIPPRIILKD-RLFDVTNAKDFVNEAY 318 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 125/316 (39%), Gaps = 14/316 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT--QGYYAGVRQGVQDAAKDSSVQVQL 64 + L + + K+ IG + Y ++D V+ Sbjct: 1 MQKKLAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKY-PNVEG 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 I +A G+++++ V L+ + VDAIIL + + VR+A + GIPVI N+ I++ Sbjct: 60 IVLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISE 119 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 KG + +++A+ + + G AA+ + ++ I ++ + R+KGFE Sbjct: 120 KGQE-FITAFSGPNTI----TQGQYAAELMCEGLNGKGQVVQITGQPGYQTAINRQKGFE 174 Query: 184 EVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTP-DLNAIMGESGGATLGAVKAVRN 241 + L + PG I+ +Q G +K+ V E I ++ + +GA+ A++ Sbjct: 175 DSLAADCPGVSIIDSQPGDWNREKSQRVMENFITRFGTKIDGVYAADDNMGIGALNAIKE 234 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 + I + G+ ++ V S A A T+K++N EK Sbjct: 235 ADLKN-IKIVGATNFAVGYDAIKEGSYY-GSVVQSPVSDAIAALAITMKILNGDK-VEKD 291 Query: 302 IQVPIDLYTKTEDGKQ 317 T + Sbjct: 292 NYFDTPKVTLANIDEF 307 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 76/326 (23%), Positives = 136/326 (41%), Gaps = 26/326 (7%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKE---------MTIGAIYLDTQGYYAGVRQGVQDA 54 + +LL+ ++ S + K+ +TIG + + Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 A V LI +A+GD++K+ +TL+A+ VDA+I+ GS+ V A+EA IP Sbjct: 61 AAKEQ-GVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIP 119 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFE 173 +I N I DK +A++ E G+ LG +F N +I +I Sbjct: 120 IIICNGDI----ADKNYTAFVGCTDQESGEILGT----WFNDNVEHGSQICIIEGPMGQS 171 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD-LNAIMGESGGA 231 V R GFEEV + ++++ Q D+A+++ E + + D L AI+ E+ Sbjct: 172 GQVGRYAGFEEV--GMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGDKLKAIVCENDDM 229 Query: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 +GA+ A + + + + G D + Q +++ + L V G L++ Sbjct: 230 AMGALSACKAAGRTD-VVIGGVDGLEDAIQAVKDGE-LGVSVLQDSAGQGEGAVEVALQI 287 Query: 292 INKQADGEKVIQVPIDLYTKTEDGKQ 317 IN + D +K ++P T Sbjct: 288 INGE-DYQKDTRIPFHAITSDNVDAY 312 >UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderiales RepID=Q221W3_RHOFD Length = 331 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 119/324 (36%), Gaps = 18/324 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE--KEMTIGAIYLDTQGYYAGVRQGVQDAAKDS 58 M + LL L + A+ K++ I I ++ G + AA Sbjct: 17 MKKLPPLFQFALLAIPLTLAVQMNATAKDVKDLRIAVIPKVAVPFFDDCNNGAKAAADKL 76 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 VQ Q + S + ++ L+++ VD I +S +++A +GI V+ + Sbjct: 77 GVQYQWVVPQ-NTQGSTQVRILEDLISKKVDGIAISVNEPKSVEAAIKKAVASGIKVVTF 135 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQ 177 ++ G Y+ G+ +G + A + ++A++ + + Sbjct: 136 DSDSANSGRSM----YIGTINSAAGETMGESMAKAI----DGEGEVAILTGQLGAANLNE 187 Query: 178 RRKGFEEVLKSRVPGAQIVANQ-EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGA- 235 R G ++ L S+ P ++VA + L KA+S E L P L I G S Sbjct: 188 RITGIKKSL-SKYPKIKVVATEGTEDDLAKAVSTTESLFRGHPALKGIFGVSQVGGPAVS 246 Query: 236 -VKAVRNQN-QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 V A + + G + VF D + + ++ + + ++ MG + I Sbjct: 247 KVMATKEFGSKKGAVKVFAFDDLPDTVKGVKEGYI-QGIMVQRPVTMGKLAVEHLVDQIT 305 Query: 294 KQADGEKVIQVPIDLYTKTEDGKQ 317 + K + +++ T G Sbjct: 306 GKEPAPKDVDTGVNVVTSQNLGSY 329 >UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Rhizobiales RepID=B5ZNU3_RHILW Length = 329 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 132/315 (41%), Gaps = 11/315 (3%) Query: 6 RTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGY-YAGVRQGVQDAAKDSSVQVQL 64 R L A ++ +A+ + ++TI I DT + + V G + A KD V V Sbjct: 10 RRAFTALAGAAVIATAMPVTSFAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPE 69 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + A+ DI+ + + ++ VA A+++S + + A+++ +P+I ++ + Sbjct: 70 LGAQAESDINGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAKS-VPIIGIDSGADS 128 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI-DQPKIAVI-NCEAFEVCVQRRKGF 182 K ++L D ++ G+ + A ++ +I ++ N QRR+GF Sbjct: 129 KA----FKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGEIVILTNLPGVGSLEQRREGF 184 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 + +K++ PG +++A++ G +++ LI + P L + + G +A+ Sbjct: 185 LDQIKTKHPGLKVIADKYGDGQATTGLNMMTDLITANPKLVGVFASNLILAQGVGQAIAE 244 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 KI V G D + L++ + +V +MG L V + E Sbjct: 245 NKLGDKIKVIGFDSDDKTVGFLKDGAI-AGLVVQDPYRMGYDGIKTALAVSKGEK-VEAN 302 Query: 302 IQVPIDLYTKTEDGK 316 + +L TK Sbjct: 303 VDTGANLVTKANMAD 317 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 132/334 (39%), Gaps = 25/334 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE------------MTIGAIYLDTQGYYAGVR 48 M K + R ++++ +L E E + +G ++ + Sbjct: 1 MKRKNKIFRKVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTAN 60 Query: 49 QGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 LI NA+ + + + +++ VD I+ S + E+G +R A Sbjct: 61 TRSVKETLTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREA 120 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK--IDQPKIAV 166 EA IPVI + IN K + +A++ D +E G+ G DY + DQ I V Sbjct: 121 REAEIPVILMDRKINVKD-ESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVV 179 Query: 167 INCEAFEVCV-QRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAI 224 + A + R +GFEE + ++ I+ K +L+ + P+++ + Sbjct: 180 LQGTAGTTAMFGRTQGFEE-IAAKHENWNILEQTNADFTTAKGEEEMRRLLNTYPEIDVL 238 Query: 225 MGESGGATLGAVKAVRNQNQA----GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + ++ T GA++A+++ + G I V D T + ++++ + V+ + Sbjct: 239 VSQNDDMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAI-NVDVECNPY-Q 296 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 G + ++ + EK V ++T+ Sbjct: 297 GKY-IEEIIQALETGQSIEKDNYVEEKVFTQKNV 329 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 124/311 (39%), Gaps = 17/311 (5%) Query: 9 RNLLLMATLLGSALFARAAE--KEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLI 65 ++ TL + + K++ GA Y+ Y+ + + ++++ + LI Sbjct: 4 ATIVACTTLFIAIGIHEKKDTRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGD--ILI 61 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 + D K++ + ++ +D + L V N + + IPV ++ ++ Sbjct: 62 TRDPLQDQKKQNEQIKDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDT 121 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV 185 V + +V D + G + K I ++N +A +R KGF + Sbjct: 122 EA---VVSTIVSDNYDAGVQCAKDMM-----KKKTSANIIIVNQKALNSINERVKGFRDT 173 Query: 186 LKSRVPGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ 244 +K P +IV + + A+ V EK+I + + +MG + LG + A++ ++ Sbjct: 174 IKGH-PQYKIVEEKESAAEFEIAMKVMEKIIYEKKNYDVVMGGNDPIALGCIAAMQMTDK 232 Query: 245 AGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQV 304 ++ V+G D + + ++ L+ S K+G + + +K + + Sbjct: 233 TDQVMVYGVDGSPDGKAMIKAG-FLEGTAAQSPIKIGEKAVQTAYSYLAGET-VKKHVTI 290 Query: 305 PIDLYTKTEDG 315 P++L T Sbjct: 291 PVELITADNLK 301 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 118/293 (40%), Gaps = 12/293 (4%) Query: 26 AAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A G T Y+ + +G + A ++ ++GD + + L++ Sbjct: 53 PAAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENLIS 112 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 + +A++ S ++ V A+ AG+PV+ N + + Y+ ++ G Sbjct: 113 QGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAAN-----YVG--NVQKGN- 164 Query: 146 LGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL 204 G A++FIAN+ D K+AVI QR GF E + + + + Sbjct: 165 -GVNVANWFIANRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVVASVPANWSR 223 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 ++A + ++ PDL + G LG V+AV+ +A ++AVFG+D ++ + Sbjct: 224 EEAFNAASTILQQYPDLIGFYANNDGMALGVVEAVKAAGKAEQVAVFGTDGISDAYAAVR 283 Query: 265 NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 L VD G L+++ Q D +V+ P L TK Sbjct: 284 AGD-LTGTVDSFPVLTGEIAMEVALRLMAGQ-DLPRVVATPQALITKDNVETY 334 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 16/301 (5%) Query: 20 SALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIET--NAQGDISKES 77 S A A K + ++ + G ++ K ++ Q L+ + D + + Sbjct: 26 SVARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQI 85 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK--GVDKYVSAYL 135 V+ ++ VDAI+L+ V++A +AGI V+ + ++ ++ Sbjct: 86 RIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFV 145 Query: 136 VGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQ 194 D + + +G+ A A + ++ QR GF++ +K+ GA+ Sbjct: 146 GPDNRKGARMVGDYLAKRLKA----GDAVGIVEGVPTTTNAQQRTAGFQDAMKAA--GAK 199 Query: 195 IVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS 253 +V+ Q G +DK +V ++ P+L A++ + +GAV AVR + GK+ V G Sbjct: 200 VVSVQSGEWEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGY 259 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI---NKQADGEKVIQVPIDLYT 310 D I L++ +VL A D K LK + KQAD V+ P+DL T Sbjct: 260 DNINAIKPMLKDGRVL-ATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVT 318 Query: 311 K 311 K Sbjct: 319 K 319 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 132/288 (45%), Gaps = 15/288 (5%) Query: 32 TIGAIY--LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVD 89 T+G + + ++D A+ V+ L+ NAQ SK+ + V L+A+ D Sbjct: 82 TVGFSQSEKEANPFRIAETASLKDEARKRGVK--LLAVNAQSQFSKQISDVQDLIAKGAD 139 Query: 90 AIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNA 149 ++++ ++ +G +R AS IP++ + IN YV +++ D +E G Sbjct: 140 LLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYV-SFIGSDFVE----QGRR 194 Query: 150 AADYFIANKIDQPKIAV-INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKA 207 AAD I + ++A+ + V +R KGF++ + + PG ++V Q G +K Sbjct: 195 AADKMIEATGGKGEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAREKG 254 Query: 208 ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-GKIAVFGSDMTTEIAQELENN 266 SV E+LI S P + I E+ LGAV A+++ + G + + D T +++ + Sbjct: 255 QSVTEQLIQSKPGIKGIYAENDEMGLGAVNALKSAGKKPGAVKIVTVDGTRNAVKQIVDG 314 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 + V++ + + G F L K + ++ I + Y KT Sbjct: 315 WI-SGVIESNPR-FGPLAFQT-LDTFTKGEEVQQDIVIKDSAYDKTNA 359 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 64/357 (17%), Positives = 127/357 (35%), Gaps = 44/357 (12%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA-----------------------------AEKEM 31 M L + A LL + ++ Sbjct: 1 MKRAFALLMALTMAAGLLAGCGSGSSTPAASSAAPAAPAASEAAPASEPAGQPAGGADKI 60 Query: 32 TIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 G + +D T ++ + +G AA+D +V + D + + ++ + + VD Sbjct: 61 VCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFD--NQISLIENFIEQGVDC 118 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 I++ + G + +AS AGIP I ++ + V + E + + Sbjct: 119 ILVDPLDSEGLKPVIEKASAAGIPTITMAGQVDVETNYTTVY-----NDEENTRIIAEMT 173 Query: 151 ADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAIS 209 A ++ K A++ + V R+KG+ + + P +V + Sbjct: 174 AKMI----GEEGKTALLYGNKGNLVSDLRQKGYYAGM-EKYPNITVVEQPTNWDPPTGMK 228 Query: 210 VGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVL 269 + LI + PDL AI S TL A +AV+ + G+I V D + + +E+ Q Sbjct: 229 AAQDLIAANPDLKAIHCISDAVTLAAYQAVKTAGKEGEIIVTSYDGNDDALKAVESGQ-F 287 Query: 270 KAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGL 326 + V KK G L++ + EK++ + E+ ++ ++G Sbjct: 288 TSTVLTGAKKTGYWNIQVALQLASGVRPAEKILNLDTHFVMTDENKAKFAEMGIEGT 344 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 14/291 (4%) Query: 34 GAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIIL 93 G T Y+ + +G ++ V + ++GD + + + ++ + +++ Sbjct: 60 GVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGLLV 119 Query: 94 SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADY 153 S ++N + A+ GI V+ N + + D G A + Sbjct: 120 SPQTDNNLQPAMETAASRGIAVVNVNDAVIPSATQ--YVGNVQRDN-------GVRVAQW 170 Query: 154 FIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVG 211 FI N+ K+A I QR GF + Q+VA+ ++A Sbjct: 171 FIDNRPGGGKVAAIEGQPGVFAAGQRTDGFTTTITEAG-NFQVVASVPANWSREQAYDAA 229 Query: 212 EKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKA 271 ++ PDL + G LG V+AV+ N +++VFG+D + + L Sbjct: 230 STILQQHPDLIGFYANNDGMALGVVEAVKAANLQEQVSVFGTDGIPDAYASIRAGD-LTG 288 Query: 272 VVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH 322 VD G L+++ Q +V+ P L T + Sbjct: 289 TVDSFPVLTGEVAMEVVLRLLAGQG-IPRVVATPQALITADNVADYSVEDS 338 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 115/297 (38%), Gaps = 16/297 (5%) Query: 14 MATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGD 72 + + + A + IG I T Y GV+ A K Sbjct: 63 VTGIGAQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADS 122 Query: 73 ISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVS 132 + ++ ++ ++ ++VDAII+ NG VR+A +AG+ V+ T + + Sbjct: 123 VEEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRT-- 180 Query: 133 AYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVP 191 D E G + A AD + K ++ ++R G L Sbjct: 181 ---GVDYYESGYTMAKAVAD----KLGGKGKFIILEGPAGASNAIERLNGINTGLSE-YE 232 Query: 192 GAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAV 250 G +IVA+Q + +SV E LI D++A++ + + LGAV+A+ N + + V Sbjct: 233 GIEIVASQTANFKRTEGMSVTENLIQQYTDIDAVIACNDESALGAVQALTAANMSD-VLV 291 Query: 251 FGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-KVIQVPI 306 G D + + ++ + A + G A +K +N + + E K I P Sbjct: 292 CGFDGSVDATNAVKEGTMF-ATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPT 347 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 121/296 (40%), Gaps = 12/296 (4%) Query: 23 FARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 FA+A ++ ++ V+ G + AAKD V+V + + K+ + Sbjct: 21 FAQAQQEIYIPLVSKGFQHQFWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAA 80 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 +A+ AI +A+ + +++A A IPV+ +++ ++ D Sbjct: 81 ALAKKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFDSGVDSDIP----VTTTTTDN--- 133 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFEEVLKSRVPGAQIVANQE- 200 K AAD ++A++ + V RR GF +KS P +IV+ Q Sbjct: 134 -KAAAALAADKMAEMIGKSGEVALVVHDQTSRTGVDRRDGFVNRIKSAYPNIKIVSVQYG 192 Query: 201 GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 G K+ + + ++ ++P+L I G + G+ +G V V+ ++GK+ + G D + Sbjct: 193 GGDQLKSTEITKSILQASPNLKGIFGANEGSAIGVVNGVKEMKRSGKVVIIGYDSGKQQK 252 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + + + A + + MG +K I + KV+ Y KT Sbjct: 253 NAIMDGSMAGA-ITQNPVGMGYKTVEMAVKAIKGEK-LPKVVDTGFFWYDKTNIAD 306 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 114/295 (38%), Gaps = 19/295 (6%) Query: 30 EMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNV 88 + I + T ++ V G A+++ V V + D+ + V + VA+ V Sbjct: 40 RLRIAVVPKGTTHEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGV 99 Query: 89 DAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGN 148 I+L+ + VR A +A IPV+ +++ + +++ D G+ G Sbjct: 100 SGIVLAPLDATALRAPVRAARQAKIPVVVFDSDLASDDH----VSFVATDNEAAGRLAGE 155 Query: 149 AAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVAN--QEGTVLD 205 + + K+ V+ + R KGF + +++ +PG + + G + Sbjct: 156 ----HLGKAIGEDGKVVVLRYQEGSASTQHREKGFLDAVRA-MPGVTVASENQYGGATTE 210 Query: 206 KAISVGEKLIIST----PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 A E L+++ + + + T G ++A+R N A K+ G D + ++ Sbjct: 211 SAFHKSESLLLAQRAAEGAIAGVFTPNESTTFGMLQALRKTNVARKVKFVGFDASEKLLG 270 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 L + +A+V + MG + ++ + I + T+ + Sbjct: 271 ALREGDI-EALVVQNPFNMGYVAVKTMVAHLHGEKVA-ARIDTGSRVVTRQDLDD 323 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 118/306 (38%), Gaps = 21/306 (6%) Query: 19 GSALFARAAEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 +A A K I + Y + + + QGV+D AK+ V+V ++ +A+GD S + Sbjct: 26 SAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVL--DAKGDSSTQI 83 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG 137 + + +A+ VD I+LS + V+ +AG V ++ I D A + Sbjct: 84 SQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIAD----AAVAF 139 Query: 138 DPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIV 196 D + GK A A ++ + + R KGF + +K + PG +++ Sbjct: 140 DNEKAGKLGAEALAKLM----GEKGTVLEYQGAKGAYHAILRGKGFNDGIK-QFPGIKVI 194 Query: 197 ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ------AGKIAV 250 D A+S+ + +N + + G V + N+ A I + Sbjct: 195 GRDAQWTADNALSLTVDNFTADSSINGLFSHNDEMVRGIVSGLSQINKDAPVGAANHIPL 254 Query: 251 FGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 G D T + N V A +D + +MG + +++ + K+ L T Sbjct: 255 VGVDGTPLALDRIRNG-VQDATMDQNPFEMGALALQAQVDLLDGK-QVPKMQLTDTKLIT 312 Query: 311 KTEDGK 316 K Sbjct: 313 KENVDD 318 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 120/290 (41%), Gaps = 16/290 (5%) Query: 33 IGAIYL--DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 +G + + + + + AK V+ LI+ NA D++ +++ ++ ++A+ Sbjct: 84 VGFSQSESTSNPFRSTETDSITNQAKSLGVK--LIQRNANADVNAQNSQIEDMIAQGAKV 141 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAA 150 +I++ + +G + A IPV+ + + ++ A++ + A Sbjct: 142 LIVAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTACSDFI-AFIGSNFYG----QAQIA 196 Query: 151 ADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAI 208 AD Q K+A+++ V R GF++ +K++ P +VA+Q G Sbjct: 197 ADDLATATGSQAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKFDQTDGQ 256 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQELENN 266 SV +++ + P + A+ E+ LGA++A+ + I + D T + Q++ Sbjct: 257 SVMAQMLQANPGITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQQAVQDVAAG 316 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + A V+ + + G F+ KVI +T+ + Sbjct: 317 TIY-ADVETNPR-FGPLAFSSLQAFFGTSGVASKVIIKDSH-FTQANAQQ 363 >UniRef50_A9KMR5 Putative solute-binding component of ABC transporter n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMR5_CLOPH Length = 334 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 127/332 (38%), Gaps = 17/332 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA---AEKEMTIGAIYLDT-QGYYAGVRQGVQDAAK 56 M + L+++ +L ++ +E E TI I Y++ V+ G + A K Sbjct: 1 MKKLLSMMLALVMVFSLTACGSTNKSKDSSEGEKTIYVIVKVLGNQYWSVVQAGAEKAGK 60 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 D +V ++ T A+ DI + ++ ++ DAI+++ + + ++G P++ Sbjct: 61 DLGCKVVIVGTAAESDIEGQVRYIQDAISAKADAIVVAPLDRTALKNPISEQFKSGTPIV 120 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK---IDQPKIAVINCEAFE 173 ++ + + S L+ D +E G+ A + IA+ Sbjct: 121 LIDSSVEGED----YSTALMTDNVEAGRMAAKEMIARLKAKGVAEDKEGTIAIQAGSTGS 176 Query: 174 -VCVQRRKGFEEVLKSRVP-GAQIVANQ---EGTVLDKAISVGEKLIISTPDLNAIMGES 228 R KGF E P +++ + + KA++ + + + +L + G + Sbjct: 177 MAINDRLKGFNEYWGENAPASWKVLNDDIKINDGDISKAVAFCQDFLTTYTNLIGVFGPN 236 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 G+T+G V + + + + G D + EI Q + + A + MG Sbjct: 237 NGSTVGFVTGLTEAKRTD-LTMIGFDFSNEIEQMIRGGEYDVASMVQRQYMMGYDGVKTA 295 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 L++ N K++ + + + + Sbjct: 296 LELANGGKVENKIVDTGVLVVDNKNVDSEDVQ 327 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 108/299 (36%), Gaps = 20/299 (6%) Query: 22 LFARAAEKEMTIGAIYLDTQGYYA-GVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFV 80 A E IG + + G+Q + +LI +A + + + + Sbjct: 16 GCAGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHN-NTKLIFRDAHANSAVQVKQI 74 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + L+ + +I+S + + + +A + G+PV+ + + Y +AY+ GD Sbjct: 75 EELLRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSP----YYTAYVGGDNY 130 Query: 141 EFGKKLGNAAADYFIANKIDQPK-IAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 + GK +G AA K I + R +G + L +R P + VA Sbjct: 131 QVGKTVGEYAAALL----GGNGKMIEITGLPRSSPASDRHRGLVDALATR-PSIRRVATL 185 Query: 200 EG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 G D A S K++ PDL+ I ++ +GA + + KI V G D Sbjct: 186 NGQWQKDIAKSELRKVLPRFPDLDLIFAQNEVMAMGAREVCNDIFPDRKIRVIGVDGLPG 245 Query: 259 I---AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 Q + + + A G + ++ KQ +K + + + Sbjct: 246 QFGDIQMVYDGHI-TATALYPTG--GEEAARVAMNILQKQ-PYQKENLLQTAIIDSSNV 300 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 110/326 (33%), Gaps = 30/326 (9%) Query: 9 RNLLLMATLLGSALFARAAEK-EMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIE 66 R LLL T L S + EK IG + + + ++ +L+ Sbjct: 6 RYLLLFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELS-LHPGAKLVY 64 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 +A + + + V ++ + +D +I+S + V + GIPVI + K Sbjct: 65 ADADNNSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDR----KT 120 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEV 185 + Y+ D + G + Y I V+ ++R KGF + Sbjct: 121 TSNLYTCYVGADNYQIGYMA----SQYLGNTISGPANILEVMGLPGSSPTIERNKGFNDG 176 Query: 186 LKSRVPGAQIVANQEGTV----LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 LK + P +I + G ++ +S + D++ + + A + Sbjct: 177 LK-KFPNLKIKSQVYGDWMKPNAERQLSKISDQLN---DIDVVFAHNDNMAFAAQSVFKK 232 Query: 242 QNQAGKIAVFGSDMTTEI---AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 A + G D T Q + N ++ A + G +K+++ + Sbjct: 233 LGIASQAKFIGIDATPGAGGGLQMISNG-LIDASMLYPTG--GKEAITTAIKIMD-KIPF 288 Query: 299 EKVIQVPIDLYTKTED---GKQWLAT 321 K + +P + + QW Sbjct: 289 SKELILPSLVIDSSNVRLMNMQWERI 314 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 125/324 (38%), Gaps = 16/324 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65 ++ L L + L A + TI T Y+ VR G + AAK +V Sbjct: 1 MSKLKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHY 60 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 I ++ + ++ ++ + AI+ V V + ++A IPV+ + Sbjct: 61 IPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNV----TDR 116 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEE 184 A++ D G + G Y + + + ++ + V R +GF + Sbjct: 117 SAGGKFLAFVGADDYSLGLETGR----YLLKEMGGKGNVVILEGVKGSLTNVDRVRGFND 172 Query: 185 VLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 LK +++A+Q + + V E L+ S P ++ ++ + +GA++A+ N Sbjct: 173 ALKE-FKDVKLLASQPANYQRLQGLQVMENLMQSHPQIDGVLAANDAMAIGAIEALDGAN 231 Query: 244 QAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 + K+ G + T E +++ ++L A D +G G ++ + K+ +V+ Sbjct: 232 RKAKV--VGINGTKEAVDAIKSGKLL-ASGDYNGFLQGCIGTMVAIRALRKETIVNEVVL 288 Query: 304 VPIDLYTKTEDGKQWLATHVDGLP 327 P + + + P Sbjct: 289 KPT-VVNASNYKPYDVPLESRSCP 311 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 117/300 (39%), Gaps = 14/300 (4%) Query: 20 SALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKEST 78 +A + E I I Y+ VR G Q A D + T D+ + Sbjct: 52 AAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVK 111 Query: 79 FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGD 138 V+ + R V AI++S V+ +G +++A +AGIPVI + +N + + + + Sbjct: 112 LVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNAD----FPRSTVSTN 167 Query: 139 PLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVA 197 GK + A+++ R KGF + L P +I+ Sbjct: 168 DEAAGKFAAEKLKELAGDA---GGTFAIVSAVPGAVQEGGREKGFSDEL-GTYPNYKIIG 223 Query: 198 NQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 G ++ ++ + ++ S PD+ + G++ G VR + KI V D + Sbjct: 224 TYYGKGDRNQTYNITQDILTSNPDITGFYTVNEGSSAGVTLGVREGDLKEKIFV-AFDPS 282 Query: 257 TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 TE+ + + V A V + +G +KV+N + EK I VP+ T Sbjct: 283 TEVLDAIRDGYVDGA-VAQNPYLIGRTAVLNAIKVLNGET-VEKKIDVPVTWVTIDNLDD 340 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 122/318 (38%), Gaps = 15/318 (4%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M R T A LG+AL A +A+ + ++ G + AK+ Sbjct: 1 MKLTRRLTLAAFAGALALGTALPAFSAD--LIAIITPAHDNPFFKAEAVGAEAKAKELGY 58 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + L+ + D +K+S +DT + R AIIL + S V++A +AGIP + Sbjct: 59 ETLLMTHD--DDANKQSEMIDTAIGRGAKAIILDNAGADASVAAVKKAKDAGIPSFLIDR 116 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 IN GV A +V + + + + ++ E+ R + Sbjct: 117 EINATGV---AVAQIVSNNYQGAQLGAQEFVKLMGEKGNY---VELVGKESDTNAGIRSQ 170 Query: 181 GFEEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 G+ +V+ P + VA Q +A S E ++ + PD+ ++ + +GA+ A+ Sbjct: 171 GYHDVIDD-YPDLKSVAKQSANWSQTEAYSKMETILQANPDIKGVISGNDTMAMGAIAAL 229 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ-ADG 298 + + + V G D + ++ +++ + KA V Q I + Sbjct: 230 QAAGRKD-VIVVGFDGSNDVRDSIKSGGI-KATVLQPAYAQAQLAVEQADAYIKNKTTPK 287 Query: 299 EKVIQVPIDLYTKTEDGK 316 E+ + L GK Sbjct: 288 EEKQLMDCVLINADNAGK 305 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 142/319 (44%), Gaps = 20/319 (6%) Query: 2 PTKMRTTRNLLLMATLLGSALFA----RAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAK 56 T ++ L L TL+ ++ +A + GA Y+ ++ + ++ A + Sbjct: 8 KTIVKMMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVE 67 Query: 57 DSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVI 116 + LI + D+ K++ + L+ + VDAI ++ + ++ A +A IPVI Sbjct: 68 ANGD--VLITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVI 125 Query: 117 CYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCV 176 + I + + V+ + + + G +K D KI ++ + V Sbjct: 126 VVDAPIYDESL---VNCSIASNNYDAGVLCAKDMM-----SKRDHAKIILLEHATAKSAV 177 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235 +R +GF + + S Q++ + ++ A+ ++++ TPD++ +M + + LGA Sbjct: 178 ERIQGFLDTIASNA-NYQVINRADCDGQIEIAMPTMKQMLKETPDVDVVMALNDRSALGA 236 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 + A+ + + V+G D + ++ + + +++A S KMG + + ++ + Sbjct: 237 LAAIESMEI-DNVLVYGVDGSPDVKELINTG-LIQATAAQSPVKMGQLAYQKAKALLENK 294 Query: 296 ADGEKVIQVPIDLYTKTED 314 EK I+VP++L ++ Sbjct: 295 K-IEKKIEVPVELISRDNI 312 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 114/291 (39%), Gaps = 15/291 (5%) Query: 32 TIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA 90 I + + T Y+A +R G K V+V++ ++ D + E+ + TL + + Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 91 IILSAVSENGSSRTVRRASEAGIPVICYNTCIN---QKGVDKYVSAYLVGDPLEFGKKLG 147 + V+ + ++ IP++ +T I+ K ++++ D L G++ G Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 148 NAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLD 205 + ++A++ + + R+KGF E + + IVA Q Sbjct: 141 EGLLKLM----GGKGEVAILQGIAGEQNGINRQKGFTEKVAGK---LDIVATQPADYDQA 193 Query: 206 KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELEN 265 K +V E ++ + P + I + LGA +AVRN GK+++ D + + ++ Sbjct: 194 KGQTVTEAILKAHPKITGIFAANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAVKA 253 Query: 266 NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 L + G + ++ + I PI L T K Sbjct: 254 GT-LSGTISQYPYAEGQLAVQACIDLVA-KKKVPSRIVAPIALIDSTNVDK 302 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 130/322 (40%), Gaps = 19/322 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M K L + LL S A A +K + + + Y+ + ++ A+ Sbjct: 3 MKGKRLLIAALAVGVPLLASG--ASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGY 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 + + ++ +GD + ES +DT + +AIIL + +GS VR+A EAGIPV N Sbjct: 61 EADV--SSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINA 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 INQ+G+ + A LV + + A +I + D + + + R Sbjct: 119 EINQQGLAE---AQLVSNNAQG----AALGAQQWIKSVGDSARYVELKGAPSDNNAATRS 171 Query: 180 KGFEEVLKSRVPGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 G+E VL S+ PG + V + + + + ++ + PD++ ++ + LGA+ A Sbjct: 172 NGYETVL-SQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISA 230 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA-- 296 ++ + + V G D + + + ++ + + V K + Sbjct: 231 LKEAGKLDDVVVGGFDGSPDAVEAVKAGE-MDYTVLQPVAIFSEMAVRMADKYVTTGETG 289 Query: 297 -DGEKVIQVPIDLYTKTEDGKQ 317 DGEK + L T Sbjct: 290 VDGEKQLF-DCFLITSDNVDDY 310 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 107/302 (35%), Gaps = 20/302 (6%) Query: 19 GSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 + + K IG + + ++ L+ +A+ +++ Sbjct: 38 MAGCQSATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELT-FHPNYTLLYEDAENSTTRQI 96 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG 137 + + L+ + +D +I+S ++ + + GIPVI + I + +AY+ G Sbjct: 97 SQIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETES----YNAYIGG 152 Query: 138 DPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIV 196 D +E G+ G ++ + +I I + +R +G E L+ + PG Q+V Sbjct: 153 DNVEIGRLAGVFIGNHLK----GKGRIVEIWGLPSSSPAQERHRGLLEELR-KYPGIQVV 207 Query: 197 ANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDM 255 G D V + + D++ + + LGA + + K+ G D Sbjct: 208 KELNGQWERDTVGRVVAAELNTLKDVDLVFAHNDVMALGAYAVCKQKGIEKKLDFVGIDA 267 Query: 256 TT---EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 Q + + +LKA G +++ ++ + + I + Sbjct: 268 LPGPNAGMQAITDG-ILKASFLYPTG--GEEAIETATRILAGKSVKREQVLNSIQ-IDGS 323 Query: 313 ED 314 Sbjct: 324 NV 325 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 132/333 (39%), Gaps = 20/333 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE-----MTIGAIYLDT-QGYYAGVRQGVQDA 54 M +M ++ L+ ++G A A + + I I + Q Y A + + A Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 KD +++V L+ + D ++++ + ++ D I++S V + V A +AGI Sbjct: 61 EKDLNIKVNLV--DGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIE 118 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFE 173 V T I + V VG ++G A D KIA+I Sbjct: 119 VCALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEALDRSGKIAIIEGTPGMS 178 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGAT 232 R+KG +E K P ++V+ G + DKA + + +I S P++ ++ S Sbjct: 179 DTEGRKKGIDEENKE-YPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEVELVICHSDNMA 237 Query: 233 LGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVI 292 +GA KA+ + + K+ + G + + ++ ++ + + T KV+ Sbjct: 238 VGAAKALEDADMTDKVKIVGIGGSKDALDLIKKGEIY-GTIMYVPETEAYTALEATAKVV 296 Query: 293 NKQADGEKVIQVPI--------DLYTKTEDGKQ 317 +A+ E V D+ T+ K Sbjct: 297 RGEAEKETFYNVQDLPLFAETGDVCTQENVDKF 329 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 59/315 (18%), Positives = 121/315 (38%), Gaps = 20/315 (6%) Query: 18 LGSALFARAAEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDS---SVQVQLIETNAQGDI 73 + S + + + Y + A + Q A+ V + TN+ DI Sbjct: 36 VSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDI 95 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 +K+ + + L+ + VD I+++A S + V A+EAGI V+ ++ ++ A Sbjct: 96 NKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDEQ----VA 151 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPG 192 + D EFG+ AD+ + + KI V+N R G EEV K + P Sbjct: 152 TVGIDQTEFGRVC----ADWLVKKLDGKGKIVVLNGIAGTANDTMRWNGAEEVFK-QYPD 206 Query: 193 AQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVF 251 +I+ + + + E ++ + P+++ + + G T GA+ A + + + Sbjct: 207 IEILGSANASWDYAQGKAAMESMLSAYPEIDGVWSQGGAMTQGAIDAFIAAGRK-LVPMT 265 Query: 252 GSDMTTEIAQELENNQ--VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLY 309 + + N+ L + G +K ++ + K + + I + Sbjct: 266 S-EGNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEE-VPKRVTLDIPVV 323 Query: 310 TKTEDGKQWLATHVD 324 T+ K + D Sbjct: 324 TEDNVDKYYRQDMPD 338 >UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4T0_9CLOT Length = 334 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 140/339 (41%), Gaps = 32/339 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE-------------------MTIGAIYLD-T 40 M +K+ +++L+ + ++ A A++ +G I D T Sbjct: 1 MKSKVFKRLSVVLVMVIALVSVSACTAKEPGSSDSKKEETTKKDKKSGKTKVGFIVQDLT 60 Query: 41 QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENG 100 Y+ V +GV+D ++VQ+I + D + V+ L+ + VD I++ V Sbjct: 61 INYFLSVVKGVEDFQDKYDMEVQVI--DGHSDAPTQVDAVENLITQEVDCIVICPVDTVA 118 Query: 101 SSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKI- 159 V+ A AGIPVI ++ I A++ + ++G + G A + + N Sbjct: 119 PEAAVKEAQAAGIPVITWSEKIEGAD------AWIAVNNYDYGFENGKIAGQWILDNLDK 172 Query: 160 -DQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIIST 218 + K+ + + E ++R +G + L S P A+ VA Q G + + E + Sbjct: 173 QEDAKVMYVYVKENEQLIERGEGMMDGLASLAPDAETVAVQSGNTTESGMEAVETTLAKH 232 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISG 277 PDLN I+ + LGA +A+ + ++ K+ + G D + + + + +LK VDI Sbjct: 233 PDLNVIVCSNDSVALGAYEAMVSAGKSDAKVCITGQDADEKNLEYISQDTILKGTVDIGA 292 Query: 278 KKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 G + KV+ + + I V T Sbjct: 293 YNQGELLCQSVEKVLKEGKVADP-IYVSFTPVTMDNVKD 330 >UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DPH3_9BACL Length = 329 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 119/290 (41%), Gaps = 13/290 (4%) Query: 31 MTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVD 89 IG + T ++ + G Q AK V++ + S ++ +V+ +V+R+V+ Sbjct: 42 FVIGFVPGETTDPFFISMAYGAQQEAKKLGVKLIYEGAST-YSPSAQTPYVNAMVSRHVN 100 Query: 90 AIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNA 149 A+I+ +++A AGI V+ ++ I+ + +++ + D + G Sbjct: 101 ALIVCPTDLTAMIPPIKQAVNAGIKVLTADSTISDASL---LTSRITSDNEQGGAAA--- 154 Query: 150 AADYFIANKIDQPKIAVIN-CEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAI 208 AD+ + Q + V++ R GF +K + P ++V + +A Sbjct: 155 -ADFLGSMAHGQGVVGVLDPSPGISTDKARVDGFIAEMKKKYPKIKVVIEYDNEQTTQAE 213 Query: 209 SVGEKLIISTPD-LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ 267 + + L++ L I G + GA + VR+ A + + G D Q+L+ Sbjct: 214 QLAQDLMLHYGKSLVGIFGTDDTSASGAAQGVRSSGSATHVNIVGYDAEPAEVQDLKEG- 272 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 ++ A++ G ++ + ++ K +Q+P + TK + Sbjct: 273 MISALIAQKPMIEGELAVEYAVEALEHKS-VPKFVQLPNVVITKANLAQN 321 >UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KK42_CLOPH Length = 320 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 123/324 (37%), Gaps = 12/324 (3%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSS 59 M T + +LL L+ + K+ + I T ++ V G AA + + Sbjct: 1 MNTFKKIVVWILLGVMLITLVSCSNKDNKKHYVAMITKSTKSAFWQSVFAGASAAATEYN 60 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 + + + D ++ + + +A+I SAV N +++ + A++ G+ VI + Sbjct: 61 LSISYAGPELEEDYEYQNDLIYQAIEDGAEAVIFSAVDYNANAKAIEDAAKKGLKVIIID 120 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQR 178 + +N V+ + D G G AA I ++N + QR Sbjct: 121 SDVNS----NQVTCRIGTDNYAAGCMAGEAALASSEEKIH----IGIVNYDINSANGQQR 172 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKA 238 GF E++ IV + + A ++L+ P++N I + +LG A Sbjct: 173 EDGFREIVSKDSRVIDIVTINVVSTTEDARKGTKQLLEEHPEINVIATFNEWTSLGVGWA 232 Query: 239 VRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 +R+ N A + V D LE +V A++ + MG + ++I Q+ Sbjct: 233 IRDLNLADETTVVAFDSNVVSVGMLETGEV-DALIVQNPYAMGYLGVEKVAELIRGQSIE 291 Query: 299 EKVIQVPIDLYTKTE-DGKQWLAT 321 + I L T+ ++ Sbjct: 292 KGTIDTSTTLITRDNMYDAEYQKI 315 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 129/322 (40%), Gaps = 24/322 (7%) Query: 10 NLLLMATLLGSALFAR-------AAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQ 61 +LL +A G A A++ + +G + + +D A Sbjct: 23 SLLALAIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGW- 81 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 QL+ T+A SK+ + + ++A++VD ++ E + V +A +AGIPVI + Sbjct: 82 -QLVMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRD 140 Query: 122 INQK--GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQR 178 ++Q + ++ D ++ G+ AAD+ + + KI + R Sbjct: 141 VDQSVAKAGRDYITFIGSDFID----QGHRAADWLVKATGGKAKIIELEGTTGASAANDR 196 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +KGF+E++ PG I+A+Q G DK V E L+ + PD+ A+ + LGA+ Sbjct: 197 KKGFDEIIAKN-PGMTIIASQSGDFARDKGRQVMETLLQAHPDVTAVYAHNDEMALGAIA 255 Query: 238 AVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 A++ + I + D T + + L A V S G + + Sbjct: 256 AIKAAGKQPGKDIQIVTIDGTKGGMDAIAAGE-LGASVQSSPF-FGPLACDVAQRYAKGE 313 Query: 296 ADGEKVIQVPIDLYTKTEDGKQ 317 ++V Y K+ + Sbjct: 314 K-IPTWVKVSDKFYDKSNVQQN 334 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 126/290 (43%), Gaps = 15/290 (5%) Query: 29 KEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 ++ GA Y+ +Y V ++ + + Q+I + D K++ + LV R Sbjct: 43 RKKLFGATYMTMNNEFYKIVNNQIRMQVEKNGD--QMITLDPALDQKKQNEQIKQLVKRK 100 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 VDAI L+ V + A +A IPVI ++ + + + V+ +V D + G Sbjct: 101 VDAIFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDL---VAMTIVSDNYKAGVLCA 157 Query: 148 NAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEGTVLDK 206 DQ I ++ A V R GF + +K+ +I+A+ +++ Sbjct: 158 KEMMKQ-----KDQANIVLLTHNAARSAVDRINGFLDTIKNN-KNYKILASADTQGQIER 211 Query: 207 AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENN 266 A+ +K+I +++ +MG + A +GA+ A+ ++ + V+G D + E + ++ Sbjct: 212 ALPKVDKIIEEYQNIDVVMGLNDPAAMGALAALDSKGAREGVLVYGIDGSPEGKKLIKEG 271 Query: 267 QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 ++ S K+M + +++ + +K + + + + TK + Sbjct: 272 -MMTGTAAQSPKQMADTAVNAAYQILQGEKVEKKKV-ISVQMITKKNVEQ 319 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 113/304 (37%), Gaps = 34/304 (11%) Query: 34 GAIYLDTQGY-------------YAGVRQGVQ---DAAKDSSVQVQLIETN--AQGDISK 75 GAI + Y + + G + + A + ++ + T+ + D Sbjct: 83 GAITKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEG 142 Query: 76 ESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYL 135 + + + V + V+A++LS +S+ + A EA IPV N N + ++ Sbjct: 143 QLSILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM------FV 196 Query: 136 VGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKGFEEVLKSRVPGAQ 194 + LE G AA++ +A++ A V R +GFEE Q Sbjct: 197 GPNSLE----QGQLAAEWVNEKLGGSGDVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQ 252 Query: 195 IVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVF 251 +VA Q +A V + + PDL AI + LG ++AV+ + I V Sbjct: 253 VVAKQNADWDRSQAKDVAATFLKTYPDLKAIFCNNDVMALGVIEAVKEADLTLNKDIYVI 312 Query: 252 GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 G D +E + N+ + A +D G + + Q +V+ P + Sbjct: 313 GCDGQSEAYDSIRANE-MAATIDTFPYYEGYMAAEVCYRSLIGQT-VPRVVFTPSKMLDS 370 Query: 312 TEDG 315 T Sbjct: 371 TNVD 374 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 59/315 (18%), Positives = 122/315 (38%), Gaps = 14/315 (4%) Query: 4 KMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQ 63 T L A L+ A A AA + ++ +G + A + Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + D++K++ ++T +AR AIIL + + +++A AGIP + IN Sbjct: 61 VASHD--DDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREIN 118 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK-IAVINCEAFEVCVQRRKGF 182 + G+ + +V + + A+ F+ + K I ++ E+ R +G+ Sbjct: 119 ETGI---AVSQIVSNNYQG----AQLGAEKFVTLMGGKGKYIELLGRESDTNAHVRSQGY 171 Query: 183 EEVLKSRVPGAQIVANQEGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRN 241 +V+ ++VA Q +A + E ++ + PD+ ++ + LGA A++ Sbjct: 172 HDVIDEHS-DMKMVAQQTANWSQTEAFNRMESILQANPDITGVISGNDTMALGAEAALKA 230 Query: 242 QNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN-KQADGEK 300 + + V G D + + + NN +KA V G Q + + + E+ Sbjct: 231 AGR-NDVVVVGFDGSDYVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKTGKTGLEE 289 Query: 301 VIQVPIDLYTKTEDG 315 + L + Sbjct: 290 KQLMDCVLIDENNAK 304 >UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F3L8_THELT Length = 321 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 121/316 (38%), Gaps = 16/316 (5%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSS--VQVQ 63 + LL++A + + A I + T ++ G ++A D V+V Sbjct: 1 MRKFLLVLAMVFTLSALVFGA---YEIAFVVKATDSDFWQYTIVGAKNAEHDLQGLVKVT 57 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + ++ DI K+ ++ ++ DAI++S+ S + ++ + +A + GI +I + + Sbjct: 58 VYGPPSEADIDKQVAILEDVIRTKPDAIVISSTSSHATAPALNKAYQQGIKIILIDNFVY 117 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK-IDQPKIAVINC-EAFEVCVQRRKG 181 G ++L + G + + + K+ +I+ +V + R G Sbjct: 118 DTG----YHSFLATNNKVGGGLAAEKVVELLKKSGRPLKGKVGLISSMAGVQVLIDRDDG 173 Query: 182 FEEVLKSRVPGAQIVANQE-GTVLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAV 239 F LK P +I+ + + KA + E LI + D L AI ++ G + + Sbjct: 174 FTARLKELAPDLEILPTRYVDNDIAKAAAAAEDLITAYGDQLVAIFADNNHTGDGVARVI 233 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 QN K+ D + + L N LKA++ MG IN + Sbjct: 234 EEQNLQDKVIAVAYDSDPQEVEALRNGS-LKALIVQDPHGMGYKGVMFAFMAINGET-LP 291 Query: 300 KVIQVPIDLYTKTEDG 315 + + TK Sbjct: 292 SYFDTGVYVVTKENMD 307 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 120/295 (40%), Gaps = 16/295 (5%) Query: 24 ARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQ--VQLIETNAQGDISKESTFV 80 + ++ I I Q ++ + + + +D + + V+++ +I ++ V Sbjct: 47 TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + + +DAI+++ G +++A++AGI V+ NT N + +Y+ Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGD----IVSYVGAQNF 162 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 + G A Q K+ +I +R +GF+E LK PG +++A+Q Sbjct: 163 DVGYS----LATALFEKLGGQGKVILIEGKAGNSTSEERAEGFKEALKE-YPGIELLASQ 217 Query: 200 EGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 A++V E + + ++ ++ + LG ++A+++ + +I D+ + Sbjct: 218 PADWDRASAMTVMENCLQTYDQIDGVLTLTKDMGLGTIEAIKSAGRDKEIVSMTFDVDDD 277 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 + L+ + A + + + + ++ I PI + T + Sbjct: 278 VISALKAGDLY-ASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIM-PITVVTAED 330 >UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J484_9BACL Length = 329 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 66/325 (20%), Positives = 123/325 (37%), Gaps = 23/325 (7%) Query: 1 MPT------KMRTTRNLLLMATLLGSALFARAAEKEMTIG----AIYLDTQGYYAGVRQG 50 M + + TLL S + I + +D Y+ + G Sbjct: 1 MKRLPKCIYRAGILLMAGALITLLSSCGGPGSGADHQQIYDVDMIVKMDRGDYWKTTKLG 60 Query: 51 VQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASE 110 + AAK+ +V++ + + D+ + ++ + R DAIIL+A + R S Sbjct: 61 AEVAAKEFNVRLNFVAPENENDVEGQIRLMEEAIERRPDAIILAASDYEALGQVTDRTSY 120 Query: 111 AGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-C 169 IPVI ++ + V ++ + E G+K D +I +IN Sbjct: 121 YDIPVISMDSEV----ASTKVKTFVGTNNYEAGQKAAERLVDL----TGPVSEIGIINFV 172 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGES 228 + QR +GF + + R P +V Q + A + ++ P+LN I+ S Sbjct: 173 KGARNANQREEGFLDYVA-RFPDVHVVDIQYCGSDEYLAYKLTADMLKRFPNLNGIVSLS 231 Query: 229 GGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 +++GA +AV GK+ + D E+ + L+ +V +A+V + G A Sbjct: 232 AESSIGAGRAVDELGYGGKVKMIAFDNPPEMLELLQEEKV-QAMVVQNPFNNGYMAVAAA 290 Query: 289 LKVINKQADGEKVIQVPIDLYTKTE 313 ++ + E I L Sbjct: 291 VQAARGEK-LEDRIPTDTKLIDLNN 314 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 135/351 (38%), Gaps = 41/351 (11%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMT------------------------IGA- 35 M K+ ++L +LL +R + IG Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 36 IYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSA 95 + Y++ + +G+ D ++ +V++ + +AQ D + + + T +A D II+ Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEELNVELDVQ--DAQDDTNTQINQIQTFIAEGCDLIIMMP 118 Query: 96 VSENGSSRTVRRASEAGIPVICYNTCI---NQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152 V +EA IP++ + + + K V + ++ D +E G+K G Sbjct: 119 VQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQ 178 Query: 153 YFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISV 210 D+ IA+I V R++G EE L PG +IVA Q +AI+V Sbjct: 179 LL----GDEGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAITV 234 Query: 211 GEKLIIST--PDLNAIMGESGGATLGAVKAVRNQNQAGKI-AVFGSDMTTEIAQELENNQ 267 + + +++AI+ + + LGAV A+++ ++ + V G D+ +E+ ++ Sbjct: 235 TQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKAKD 294 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVI-NKQADGEKVIQVPIDLYTKTEDGKQ 317 + + + MG + + + E I + + Sbjct: 295 MYGST-LQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIENAREY 344 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 108/296 (36%), Gaps = 16/296 (5%) Query: 24 ARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 K I Y+ VR+G AAK V V + D++ + V+ Sbjct: 37 PAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNN 96 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 V D IIL+A + + V+ A IPV+ ++ ++ D +L + Sbjct: 97 AVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGLSPNISD----CFLATSNVGA 152 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVA--NQ 199 L AD+ + + A+++ + R KGF +KS P + + Sbjct: 153 AAALAKYTADHL---MGGKGQYAIVDFNHTASTGIARPKGFMLGMKS-YPHIKKMGPIQY 208 Query: 200 EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEI 259 + + + ++ P L I G + A LG +AV+ + K+ V G D Sbjct: 209 SNNDVSAGLRIATTMLTQYPHLKVIFGANDRAALGPAEAVQRAH--AKVKVVGFDADLGE 266 Query: 260 AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 ++ +++A + S MG L ++ + K I P L T G Sbjct: 267 IALVKAG-IIQASILQSPYDMGYYAVVALLDKLDGKT-LPKRINTPYFLLTPKNLG 320 >UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YA80_DICT6 Length = 338 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 125/314 (39%), Gaps = 21/314 (6%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIE 66 + L+ + +L +F+ KE+ + I Y+A V GV+ AAKD V+ Sbjct: 1 MRKILVAILIILFPLIFSIGYSKEIHVAVIGKSVHPYWAEVELGVKQAAKDLGVKATFFV 60 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 + DI + + +++ +A VD I ++ + T+ +A GIPVI +T Q Sbjct: 61 PQKE-DIPAQISQMESFIAMGVDGIAIAPSDPTAIAPTIEKAMAKGIPVITLDTDAPQSK 119 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE-VCVQRRKGFEEV 185 Y+ D GK G D K+A+ ++R +GF + Sbjct: 120 R----LVYIGTDNYSAGKIAGMVMNDLLGIK---GGKVAIGTGSLTAMNSLERIRGFMDG 172 Query: 186 LKSRVPGAQIV---ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + S +V A + +A+++ E+ +++ PDL G A KAV+ Sbjct: 173 IASN-KRIVVVTKPALCDFEDTGRAVTLAEQALLTYPDLRGFFGVYAFNGPAAAKAVKAA 231 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN-------KQ 295 + G++ + D T E Q ++ V+ A V MG K+ K+ Sbjct: 232 GKVGQVLIVCFDTTAEHMQLIKEG-VISATVGQRPYMMGYKSVEVLTKMAQKGVDATLKE 290 Query: 296 ADGEKVIQVPIDLY 309 ++I +D+ Sbjct: 291 LPANRIIDTGVDVV 304 >UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BFJ9_STRRD Length = 345 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 46/323 (14%), Positives = 118/323 (36%), Gaps = 20/323 (6%) Query: 7 TTRNLLLMATLLGSALFARAAEKE----------MTIGAIYLDTQG-YYAGVRQGVQDAA 55 + L+ ++G + A++ I I + ++ + G + + Sbjct: 15 AIALVALVLGVVGGRATSSASQSAGGGMAGAASGKKIDVIIKASDSSFWQTMIAGAKQSG 74 Query: 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115 D ++V ++ +I ++ V+ ++R VD ++++ S + + + RA +AG+ V Sbjct: 75 GDFGLKVSTFGPTSETNIDQQVQLVENSISRGVDGLVIAPNSSSALNSAIERARKAGLKV 134 Query: 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAV-INCEAFEV 174 I ++ + ++ D L+ G + G + A + + + + Sbjct: 135 ITVDSRVTTASEG-----FIGTDNLKAGMQAGKRMCELLKAQNKTSGSVMIESSVAGIQS 189 Query: 175 CVQRRKGFEEVLKSRVPGAQI-VANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATL 233 V R GF++ L + P ++ + ++ A S + + +L + ++ + + Sbjct: 190 LVDRDSGFKQGLANNCPQVKVTLQRYNNNDINTAASQVNDALTANRELAGVFADNNTSGV 249 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 GA +A+++ N + V D + L + A+V + G Sbjct: 250 GAARAIQDNNVTDTVPVVAFDSDPQENAALAAGTI-DALVVQNPYFFGYQGVLAAGMAAA 308 Query: 294 KQADGEKVIQVPIDLYTKTEDGK 316 + + I + K Sbjct: 309 GRIP-PRDIDPGAVVADKRNMND 330 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 118/321 (36%), Gaps = 17/321 (5%) Query: 11 LLLMATLLGSALFARAAEK---EMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIET 67 ++L A ++ A IG + + AA +++ T Sbjct: 19 VMLAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFT 78 Query: 68 NAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGV 127 +A+ + +++ V+ +++ +D +I+S + + V A + GIPVI + + + Sbjct: 79 DARQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQ- 137 Query: 128 DKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVL 186 + ++ D G+K G A + + + + E +R GF E + Sbjct: 138 ---YTMWIGADNRLIGRKAGEYTARWCREQQRSPCTVIELRGLEGSTPTQERGDGFREGI 194 Query: 187 KSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQ- 244 + P +I+A+Q ++A ++ L + PD++ + + + A + Q + Sbjct: 195 AAN-PDVRIIASQNADWLAERADALARVLFEANPDVDVVYAHNDPMGIAAFNVAKEQGRD 253 Query: 245 AGKIAVFGSDM---TTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 I G D + Q + ++ V +G G L+++ ++ + Sbjct: 254 TDAILFIGIDALATSDGGIQAVRQGKLNVTYVYPTG---GAEAIEWALRILEQRETPPRE 310 Query: 302 IQVPIDLYTKTEDGKQWLATH 322 I + + T + Sbjct: 311 IILDTEEVTTANADAMFQKYG 331 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 17/295 (5%) Query: 29 KEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87 + IG +T Y ++D A+ ++ + T+AQ + +K+ + V+ L+A+N Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIV--TDAQDNTAKQVSDVEDLIAQN 144 Query: 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147 +D +ILS G ++ A E +PVI + + YV+ Y+ D + G+ G Sbjct: 145 IDLLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVT-YIATDFVWEGQAAG 203 Query: 148 NAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLD 205 + I + R GF V+ G +I+A+Q G Sbjct: 204 E----WLKDKTGGTCNIIELTGTVGSSSAQDRATGFAGVVDQN-EGMKIIASQTGNFERS 258 Query: 206 KAISVGEKLIIST-PDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQE 262 + V E L+ + +++A+ + LGAV+A++ I V G D + + Sbjct: 259 EGQKVMENLLQAHGGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKS 318 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + + + A V S G F K++ Q E+ I + + + Sbjct: 319 VIAGE-MSATVVSSP-MYGPITFDTVEKILAGQEVPEQTIMEGV-VVDAGNAQEN 370 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 122/327 (37%), Gaps = 17/327 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M ++ T L + +L + +K+ + + Y + + + + Sbjct: 1 MKRRLWMTTG--LASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQP 58 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V+L+ ++AQ D SK+ V+T + + D +I++ + + +A EA IPVIC Sbjct: 59 DVKLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLER 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID--QPKIAVINCEAFEVCVQR 178 I + ++Y+ D + G+ G + +A+ E + R Sbjct: 119 DI----LQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINR 174 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +G +E+L + P +IVA+ KA +++ + P ++ + G + +GA Sbjct: 175 DRGAKEIL-DKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYL 233 Query: 238 AVRNQNQAGKIAVFGSD---MTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 + + ++ G D +++ + VL A + +++ + Sbjct: 234 GAKELGREKEMIFVGVDGLGGPAGGIKKVMDG-VLAATFVYPLWV--DKAVEIGTRILRE 290 Query: 295 -QADGEKVIQVPIDLYTKTEDGKQWLA 320 K + + T + + Sbjct: 291 PGFVPAKDYVLESVMVTTENAPQMYEK 317 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 118/315 (37%), Gaps = 14/315 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65 TT + L + + + +TI + ++ +++ ++ AK V++I Sbjct: 9 TTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLG-NVKII 67 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 ++ Q K+ ++ + + VD II++ + +R A + GI V+ + +N Sbjct: 68 RSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRPVNGV 127 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV 185 V A + D L ++ G A F I + + R KG + Sbjct: 128 ---PEVIANVAADNLIGAQRQGEAVEKLFPQ---GATIINLQGIPGDKTANDRSKGVHDT 181 Query: 186 LKSRVPGAQIVANQEG-TVLDKAISVGEKLII--STPDLNAIMGESGGATLGAVKAVRNQ 242 L + VA Q D+ +SV E L+ + P I+ + + LGA +AV + Sbjct: 182 LDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPP-TVIVAGNDDSALGAAQAVEAR 240 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN-KQADGEKV 301 GKIA+FG D +T+ + + + VL VD K G I Sbjct: 241 GLKGKIAIFGYDGSTDALKAVRDG-VLTGTVDQYPGKQGREAVKILTDYIRTGARPATVD 299 Query: 302 IQVPIDLYTKTEDGK 316 + V T Sbjct: 300 VLVSPVAITSKNLND 314 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 117/280 (41%), Gaps = 14/280 (5%) Query: 40 TQGYYAGVRQGVQDAAKDSSVQVQ-LIETNAQGDISKESTFVDTLVARNVDAIILSAVSE 98 T + + VQ A++ + + D++ + + ++ V VD II+ VS Sbjct: 9 TNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGIIIEPVST 68 Query: 99 NGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK 158 +G + V+ A + G+ V+ N I+ + ++ D G A + + Sbjct: 69 DGIVKAVKDAEKVGVKVVILNQRISDQNA---ADTFVGADNESTGA----ALMKKVMEDL 121 Query: 159 IDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLII 216 + I + + V R KGF+ VL P +++A+ KA+++ E + Sbjct: 122 DGKGNIVELLGPMGSDGQVGRSKGFDSVLAE-YPDVKVIASDSADWDTAKALTLTENWLT 180 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 S D+ A++ ++ G +GA +A++ KI V+G D T++ + N + V Sbjct: 181 S-SDIQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGG-MTGTVSQG 238 Query: 277 GKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + G +I Q+ ++VI + +YTK + Sbjct: 239 TENQGKISADLCSNLIYGQSVPKEVIATNV-VYTKENVNE 277 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 117/301 (38%), Gaps = 17/301 (5%) Query: 20 SALFARAAEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKEST 78 +A + TI + + + + G + A + V +++ + GD+ KE Sbjct: 43 AAAAQGEGKDGYTIAVLAWSQAEEFGVDIISGAEKKAAELG-NVTVVKPDPAGDMQKEIA 101 Query: 79 FVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGD 138 ++ L+ + VDAI ++ V N + + EAGI ++ Y+ + A ++ D Sbjct: 102 ILEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDIDTEAQC-----DAKVLSD 156 Query: 139 PLEFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVA 197 G ADY + + K+ ++ +R GF++ + P ++V Sbjct: 157 NAAGGAMA----ADYLVQEMGTEGKVLILTEVPGVTTAEERIAGFKDRMAEIAPNVEMVE 212 Query: 198 NQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT 257 D + E ++ + PD+ I G +LGA A + N+ + + G D T Sbjct: 213 QLSNGTRDTHRATTENMLQAHPDITGIFCFMGDNSLGAYTACKTNNRQD-VLIAGYDATP 271 Query: 258 EIAQELENNQV---LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 E ++N+ L V + KK+G ++ + V+ + L T + Sbjct: 272 EQLDIMKNDGPDCNLICSVALYPKKIGYVALETAYNILEGEE-INDVVWTELGLLTAKDA 330 Query: 315 G 315 Sbjct: 331 D 331 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 133/322 (41%), Gaps = 18/322 (5%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLI 65 LL+ AT +A + IG + Q ++ ++ GV+ A++ ++V ++ Sbjct: 2 KLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVV 61 Query: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 +A+ D + + + V L+ +++DA I ++ R A EAGIPVI + Sbjct: 62 --DAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGA 119 Query: 126 GVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEE 184 D ++ G+ +E A + I K+A+I+ + V R G + Sbjct: 120 PGD----TFIAGESVESAY----AVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKR 171 Query: 185 VLKSRVPGAQIVANQEG--TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + G +++ Q D+ S+ + ++ + PD+ I G++ G +GA KAV Sbjct: 172 AIDEN-KGVELIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVA 230 Query: 243 NQAGKIAVFGSDMTTEIAQELEN-NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 N + K+ + G D + L A S +KMG L V + E+ Sbjct: 231 NLSDKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQ 290 Query: 302 IQVPIDLYTKTEDGKQWLATHV 323 P + T ++ +++ H Sbjct: 291 --TPNAVLTTCDNAPEFVKNHP 310 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 126/318 (39%), Gaps = 21/318 (6%) Query: 5 MRTTRNLL-LMATLLGSALFARAAEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQV 62 M+ + LL + ++L + ++ E++ +G + T + + + ++ A + Sbjct: 1 MKYLKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEAS-MHPDI 59 Query: 63 QLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCI 122 L +A+ I+ + ++ + VD +I+S + + + +A AGIP I + I Sbjct: 60 ILEIKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKI 119 Query: 123 NQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKG 181 + +AY+ + +E G+ A Y +++ + I I + +R G Sbjct: 120 EGQN----FTAYVGANNIEIGRNA----AKYILSHSSGKADIIEITGQEGSSPAYERSMG 171 Query: 182 FEEVLKSRVPGAQIVANQEGTVLDKA-ISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240 F++ L S VP ++ +G + S L+ S + I + LGA + R Sbjct: 172 FKKTLDS-VPELKVRHVIKGDWEKTSIQSKLSDLLDSVKAPDYIFAHNDRMALGAWEVAR 230 Query: 241 NQNQAGKIAVFGSD---MTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 +++ +I + G D Q +++N +L A + M ++N + + Sbjct: 231 SKSLEEEINIIGVDGVFGPNGGIQLVKDN-ILNATILYPTGGM--ETIKLAEDILNGE-N 286 Query: 298 GEKVIQVPIDLYTKTEDG 315 K + + Sbjct: 287 VNKNNILRTVIIDSVNVD 304 >UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter), putative n=6 Tax=Streptococcus RepID=A3CKH1_STRSV Length = 328 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 126/294 (42%), Gaps = 16/294 (5%) Query: 28 EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 EK++ IG Y+ +Y + ++ ++ + + + D K+S +D V Sbjct: 41 EKQVKIGVTYMTMNNDFYKTLNAELEKKTNQQGSRLYV--RDPELDEGKQSQQIDFFVRE 98 Query: 87 NVDAIILSAV--SENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 VD I+++ V + ++++A +AGI +I + I+Q D V +V D + G Sbjct: 99 KVDVIVINPVKSNSPSIISSLQKAKKAGIKIIVVDAPISQ---DVKVDTTIVSDNYQAGV 155 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEGTV 203 + I ++ + R +GF + ++ + P +I++ + Sbjct: 156 LIAQDMMKRLP-----SANILLLEHRNAVSAMDRIQGFIDTIEKQ-PSYKIISQKETLGQ 209 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 ++ + + + D N +M + A +GA+ A++NQ KI+++G D + +I L Sbjct: 210 TEETMPQVKGALDEGLDFNVVMALNDRAAIGALAAIKNQGLDKKISIYGVDGSPDIKNFL 269 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 ++ V S +MG AQ ++++ + + +P+ L + + Sbjct: 270 ATTSDIEGTVAQSPIQMGRK-VAQVIELMQEGKSYDSQYLIPVHLVNRDNISQY 322 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 125/319 (39%), Gaps = 15/319 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 M++ ++A L+ A TIG + + +RQG+Q A V Sbjct: 1 MKSIFTAAVLAALMAGTASAE------TIGVSMQNFDDNFQTLLRQGLQARASQVG-GVT 53 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 L +AQ DI+++ V+ +A VDAII++ + +S A +AGIP++ N Sbjct: 54 LQIEDAQADIARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPE 113 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN-KIDQPKIAVINCE-AFEVCVQRRKG 181 AY+ + G+ AA K Q +I ++ + A + R Sbjct: 114 NINRLPKNQAYVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSA 173 Query: 182 FEEVLKS-RVPGAQIVANQE-GTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 +E L + G I + + A+ V I + ++AI S +GA++A+ Sbjct: 174 VKETLAAGECKGVTIADERSAAWMRTNAMDVTTNWITTGRPIDAIFANSDEMAIGAIQAL 233 Query: 240 RNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + + V G + + +E+ L V + K + + + ++ Sbjct: 234 KAAGVSKNDVIVVGVNAAQDGLVAMEDGD-LHVTVFQNAKGQSASALDAAVALARGKS-V 291 Query: 299 EKVIQVPIDLYTKTEDGKQ 317 ++ + VP +L T K Sbjct: 292 DRQVMVPFELVTPENMAKY 310 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 118/326 (36%), Gaps = 22/326 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS 59 M LL + +L A EK+ IG T + + + ++ A + Sbjct: 1 MKG--NPLYILLWLFLILCFACSPGKKEKKYVIGVSQCSMTDIWRQSMIRDMEVEAL-NH 57 Query: 60 VQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYN 119 +++L+ +A D + + + + + VD +I+S+ + A AGIP I + Sbjct: 58 PEIELVVMDASQDNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILD 117 Query: 120 TCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRR 179 IN + Y+ D E G+ +G + + + + +R Sbjct: 118 RKINSDE----YTTYIGADNYEIGRSIGMYISSLIK---GETTILEIWGRRGSSSATERH 170 Query: 180 KGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 +GF + + S P +I + A K + S D++ + + LGA +A+ Sbjct: 171 QGFVDAM-SIDPNVKIRELDGYWYKENAYEEVLK-LDSIEDVDIVFAHNDMMALGAREAI 228 Query: 240 RNQN--QAGKIAVFGSD---MTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 ++ G + G D + + ++ + +G G ++++ Sbjct: 229 EERDSSLVGHVEFIGVDGLLGGGLGVEAVAQGKLDASFYYPTG---GGVAIKVAWQILSG 285 Query: 295 QADGEKVIQVPIDLYTKTEDGKQWLA 320 QA +K + KT G +L Sbjct: 286 QAYTKKYALS-TAMIDKTNAGTLYLQ 310 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 110/298 (36%), Gaps = 14/298 (4%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 R L+ L GS A++ TIG Y + +G + A ++ +V Sbjct: 8 RRIVLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVI 67 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + D S +++ +D +A+ VD IIL+ + V++ ++AGIP++ + + Sbjct: 68 F--ADGKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQ 125 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGF 182 G A + D ++ G G + I V+ + R F Sbjct: 126 THGQPIKWEALVSWDMVKSGTIGGEQTVKAI----GGKGNIVVVEGTPGAGSTIDRGNAF 181 Query: 183 EEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTP--DLNAIMGESGGATLGAVKAV 239 EV+ + P +I+A K V E ++ +++AI + T G ++A+ Sbjct: 182 YEVI-EKYPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAI 240 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQAD 297 + + G+ + D E L ++ + ++N + Sbjct: 241 KAAGRLGEFKIISVDGQKEAMDLLRAREIDYEAIF-HPDDQA-VAVRILCDIVNGRTP 296 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 125/313 (39%), Gaps = 8/313 (2%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQ 63 M + L + + L A + G + ++ + QGV+ A+++ V Sbjct: 1 MSRLKTTLKLGAAFATLLAVTPAMADGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYY 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + + + +T++ RN A+I +A++ ++ A +AGI V+ + ++ Sbjct: 61 MQAVESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLD 120 Query: 124 Q---KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 Q ++ + D + G + A+ P + + +R Sbjct: 121 QAILDAEGIEITFRIGSDNVLAGAQGAEYVVSQLGADATG-PVLVIEGLSGNITGQKRAS 179 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 GF + L PG +IVA+ G KA ++ ++ P L AI + G LGAV++V Sbjct: 180 GFADKLAELAPGLEIVASLPGDWDRGKAANITNDILTRNPGLVAIFAANDGMALGAVESV 239 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE 299 + G++ + G D ++ + + + L A V +G +K+ + + Sbjct: 240 FAAGKGGEVIIVGVDGNSDAVKSINEGR-LTASVAQLPYLVGKQAVEN-VKIAVEGGEVA 297 Query: 300 KVIQVPIDLYTKT 312 K I VP + TK Sbjct: 298 KEIIVPTLVLTKD 310 >UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QS72_MYCS2 Length = 348 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 14/301 (4%) Query: 18 LGSALFARAAEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKE 76 + + A K I + + +Y ++ G Q+ A + V V + D + + Sbjct: 47 VTTVTAPPKASKNYNIAFLQGVVGDQFYITMQCGAQEEAANLGVTVNTQGPQ-KFDPTLQ 105 Query: 77 STFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLV 136 +D++VA DA++++ + +A+ AGI V+ +T N Y + + Sbjct: 106 KPILDSIVASKPDALLVAPTDVQAMQMPLEQAAAAGIKVVLVDTTTNDP---SYAVSAIA 162 Query: 137 GDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQI 195 D G+ A + K+ V+ R KGFEE + PG Sbjct: 163 SDNEGGGRAAFEAIKQL----HPEGGKVMVMGLDPGISTTDARTKGFEEAVAED-PGFTY 217 Query: 196 VANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254 V Q A + + PDL + + G+ ++ ++ ++AV G D Sbjct: 218 VGVQYSHNDPATAAQLIGAQLQRDPDLVGVFAANLFTAEGSATGIKQAGKSEQVAVVGFD 277 Query: 255 MTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 Q L V +A+V +G + + + + +Q + T+ Sbjct: 278 AGPNQIQALREGTV-QALVAQDPGTIGKFGVDEAVTALEGGENSP-NVQTGFTIITRENL 335 Query: 315 G 315 Sbjct: 336 D 336 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 65/361 (18%), Positives = 124/361 (34%), Gaps = 50/361 (13%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE-------------------------------- 28 M +M ++MA L + A Sbjct: 1 MKKRMLAVALSVVMAVGLSACTSGGNATTAAPEAKTEAAKTEEAKTEEAKTEAEAKEAAA 60 Query: 29 --KEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 + I ++ + +GV+ V+V L ++ D+ + T +++ + Sbjct: 61 GVSDKKYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQ 120 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ---KGVDKYVSAYLVGDPLEF 142 + D I ++ +S + A+ GI ++ + ++ A++ D + Sbjct: 121 QGYDGIAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAV 180 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 G K A Y + + K+A+I + + R +G ++ I + Sbjct: 181 GAKG----AQYIVDTAGEGAKVAIIEGKSGNQSSEDRTQGAKQAFTDGKMDI-ISSQAAD 235 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 KA+ + LI PDL I + G LGAV+AV N N+ G+I + G+D E Sbjct: 236 WDRQKAMDIASTLIQQNPDLKGIYCCNDGMALGAVQAVINANKLGEIMIVGTDGDAEAVS 295 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGE-----KVIQVPIDLYTKTEDGK 316 + NN+ L A V ++G ++ + GE + V L T Sbjct: 296 SIANNE-LSATVAQDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTAENAAD 354 Query: 317 Q 317 Sbjct: 355 F 355 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 127/322 (39%), Gaps = 28/322 (8%) Query: 5 MRTTRNLLLMATLLGSALFAR------AAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDS 58 M +LL A +L + + AA A+ + ++ VR G Q A + Sbjct: 1 MLRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANEL 60 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 + + ++ +A D ++ +D V+ V +++ + V + +E GIP I Sbjct: 61 GIDLTVL--DAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITV 115 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQ 177 + I V+A + + E G + A A ++ V+ E + Sbjct: 116 DRTITGAD----VAALIDSNNTEGGAAAASVLAKAIRAQ----GEVIVLRGIEGSSSSAE 167 Query: 178 RRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAV 236 R +GF + + P +IVA + D A + L+ PD+ I E+ LGAV Sbjct: 168 RYEGFTQAMAEH-PRVRIVAAEAADFDRDTARDLVTDLLADHPDVAGIFAENDEMALGAV 226 Query: 237 KAV-RNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 A+ + + V G D T E + ++N + L A + ++G Q K+++ + Sbjct: 227 DALGERAGK--DVKVVGFDGTEEGVRAVKN-RKLVATIAQQSSELGATAIEQAGKLLDGE 283 Query: 296 ADGEKVIQVPIDLYTKTEDGKQ 317 A + P+ + T+ K Sbjct: 284 AAES--VHTPVMVVTRDNIEKY 303 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 124/333 (37%), Gaps = 32/333 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSAL------------------FARAAEKEMTIGAIYLD-TQ 41 M ++ + L L + ++ +++ + Sbjct: 1 MKKRVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNN 60 Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 ++ V Q A + V + + + D+ K+ + ++ + + DAI++SA S +G Sbjct: 61 PWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGV 120 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 +++A EAGI ++ ++T I+ V + A++ GD + K G + + Sbjct: 121 IPAIKKAREAGIKIVNFDTRISDTSV---IDAFVGGDDVAGAYKAGKYICEQL----GGE 173 Query: 162 PKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTP 219 ++A+I V R GF + PG ++VA Q DKA V ++ + P Sbjct: 174 GEVAIITGLMEQSTGVDRHAGFMQACAE-YPGIKVVAEQGAEWSSDKAADVTTNILTANP 232 Query: 220 DLNAIMGESGGATLGAVK-AVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGK 278 ++ AI + +G V A +A + + G D + + L A V + Sbjct: 233 NVKAIFACNDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMTMDGD-LDAFVSLPNL 291 Query: 279 KMGNAVFAQTLKV-INKQADGEKVIQVPIDLYT 310 G + +N ++ I L T Sbjct: 292 DEGAMGVKLATALVMNSDYHYDREILYDCTLVT 324 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 117/300 (39%), Gaps = 20/300 (6%) Query: 28 EKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 K IG + + Y A V +Q K+ Q +L+ + Q + + + + V+ + + Sbjct: 47 NKSYVIGFSQANFKEPYRAHVDHELQRLVKNY-PQFKLVIADGQANDNTQVSQVENFLTQ 105 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 VD + +SA + V + GIPVI + + ++++ GD + Sbjct: 106 QVDILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEK----FTSFVSGDNRAIAHEA 161 Query: 147 GNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-GTVL 204 G AA D +A++ + ++R +GF+ + + P +I+A Q + Sbjct: 162 GLYAASLL----PDGGDVAILEGLPSSSPAIERLEGFKAGISTN-PKVKIIAVQPVDWMQ 216 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT---EIAQ 261 DKA+ V ++ + PD+ + + A GA AV+ + G++ + G+D + Sbjct: 217 DKAVEVFSAMLQAHPDIKLVYTSNDLAAAGAYIAVKQAGKLGQVKIIGTDGLPGPSGGIR 276 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINK-QADGEKVIQVPIDLYTKTEDGKQWLA 320 + Q A K++ + +++ VP + + + Sbjct: 277 AVAEGQ-WTATYVYPTG--AAEALDLAKKILIDCASSVPRLVTVPTQRIDASNAKELYAK 333 >UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2X7_9CLOT Length = 324 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 127/299 (42%), Gaps = 12/299 (4%) Query: 25 RAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + +++E++IG + +A ++D K++ + +++ ++ + T V+ Sbjct: 34 KGSDEEISIGVTVMTLANTIWAETCTAIEDNCKENGWKCTVVDCSST--AQTQITQVENF 91 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + + VDAI+++ + ++ A +AGI VI ++ + V D G Sbjct: 92 IQKGVDAIVINPTDQAALETVMKEAMDAGIKVISWDIDSDAADCCLLV------DNYNVG 145 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQE-G 201 ++G AAD+ N + ++ +++ A ++R G + + P +++VA Sbjct: 146 YEIGKQAADWIEDNLDGKAEVCILDYPEAGAEVIKRADGINDAITELSPNSKVVAQVSHQ 205 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIA-VFGSDMTTEIA 260 D + E ++ S PD + G +GA +A++ G+ A +F +D TTE Sbjct: 206 GSTDGGMQAMENVLQSNPDCRVVCSVGDGGAMGANEALKAAGIKGEEAGIFSADGTTEFL 265 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWL 319 ++ + K + + A TL + K EK + + + ++ + + Sbjct: 266 SKIAAGEPCKMSILLDDPLSKAASITDTLDKLLKDEKVEKDLYTNVQVIDESNLSEYYK 324 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 29/341 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALFA-------------------RAAEKEMTIGAIYLDTQ 41 M K+ + G + K +TIG + + Sbjct: 1 MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAE 60 Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 + +A +LI +AQ + V ++++VD I ++ V+E G Sbjct: 61 SDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGW 120 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN-KID 160 + A +A IPVI + I D S ++ D + G +Y K D Sbjct: 121 ETVLGEAKDADIPVIIVDRMIKVSD-DSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKTD 179 Query: 161 QPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIST 218 + + V+ + R KGF + +K + I+A Q G K V E + Sbjct: 180 KQNVVVLQGTIGSSAEIGRTKGFGDTIK-KYDNFNILAQQTGEFTQAKGQEVMESFLKQY 238 Query: 219 PDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 D++ ++ ++ GA+ A++ +A + + D + + + V+ + Sbjct: 239 NDIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGD-MNVSVECN 297 Query: 277 GKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 G V K++N + EK+ V +Y K+ Sbjct: 298 PLH-GPRVAELAKKLMNDEK-VEKIQYVDEKVYPAEIAEKE 336 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 52/297 (17%), Positives = 102/297 (34%), Gaps = 11/297 (3%) Query: 26 AAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLV 84 EK++ IG + + + V A+ + + LI TNA +I K+ V+ L+ Sbjct: 63 GGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYE--LIMTNADSNIEKQIGDVEDLI 120 Query: 85 ARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 A+ D I++ V N + AGIPVI +T + + D + G+ Sbjct: 121 AQKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIRSDQYQQGQ 180 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL 204 + D + + R +GF E + +++ Sbjct: 181 GCAEWTVGHVGDK--DTTVLEITGNPGQSDAQNRSRGFNEYVADHS-NIKVIQQNGEWSR 237 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA--GKIAVFGSDMTTEIAQE 262 A V + + S + I S LGA+ ++ + + D E Sbjct: 238 ATAQEVVQNVAQSGQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVDGQKEALDA 297 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWL 319 ++ +++ A++ + K G+ +F K E+ V T + + Sbjct: 298 IKADEI-GAIITCTPKG-GDVLFDCINKYFAGDELEEEY-FVHQSTITTENVDELYE 351 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 56/344 (16%), Positives = 131/344 (38%), Gaps = 28/344 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKE--MTIGA-IYLDTQGYY----AGVRQGVQD 53 M +++ L +A ++ E++ + IG IY + A + ++D Sbjct: 4 MKSRIARICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENAIKD 63 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 + +V + +A+ S ++ VD + + DAI ++ V ++ V +A EAGI Sbjct: 64 KEEKLGKKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKEAGI 123 Query: 114 PVICYNTCINQKGVDKY-VSAYLVGDPLEFGKKLGNAAADYFIAN-----KIDQPKIAVI 167 P+I +N ++ + + + Y+ D E G+ G AD + + K K+ + Sbjct: 124 PIIFFNREPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKLQYV 183 Query: 168 NCEAFEVCVQ---RRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTP-DLN 222 E +V R + + + + +A+ G A + ++ I + Sbjct: 184 MLEGEQVHQDSLIRTEYSVKTILKEGIVTEKLASGTGNWMRSPAYELMQEWIGQYGSQIE 243 Query: 223 AIMGESGGATLGAVKAVRNQNQAG--KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 ++ + +GA++A+ +G V G D T + +++ + ++ V + Sbjct: 244 VVLSNNDEMAMGAIEALVENGMSGGNGPIVVGIDGTEDGLEKIIKGE-MEGTVMNDARGQ 302 Query: 281 GNAVFAQTLKVINKQADGEK-------VIQVPIDLYTKTEDGKQ 317 ++ + ++ ++VP T + Sbjct: 303 AESILGIACACAEGKDPKQEVPELKGQYVRVPHSPVTADNVQEF 346 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 16/301 (5%) Query: 19 GSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 + A I + T Y++ + G A ++ + + + + + ++ Sbjct: 34 AFSQSAGQNTSPARIVLVMKSPTNPYFSELANGASRAQLETGIDLSIKVAHEDDALEQQI 93 Query: 78 TFVDTLVAR-NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY---VSA 133 +D ++A+ DAI+++ + RA +AGI VI + + V Y V Sbjct: 94 RLIDEVIAKHQADAIVIAPTDSIRLVPVLARARKAGIHVINIGNRLEPRIVALYGMPVVP 153 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPG 192 + D + A K+A+I QR +G + G Sbjct: 154 LISIDNASAAYQ----VAGKLAEGLPRGSKVAIIEGLLGTNNTRQRTEGALQAFSEA--G 207 Query: 193 AQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVF 251 ++VA Q D+A V +L+ PDL AI + LGA + +R + G + + Sbjct: 208 LRVVAKQSARWKGDEAYQVTAQLLRDYPDLRAIFCSNDMMALGAARYLREKGITG-VRLA 266 Query: 252 GSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 G D TE L + L A +D + G + I + V +L T Sbjct: 267 GFDGITEARSALHQ-RQLVATIDQHASEQGYLAVRLAVDAIAG-RPLAEETLVDTELLTA 324 Query: 312 T 312 T Sbjct: 325 T 325 >UniRef50_C2L0C0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2L0C0_9FIRM Length = 337 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 66/340 (19%), Positives = 139/340 (40%), Gaps = 33/340 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE-----------------------KEMTIGAIY 37 M + R L+ LG+ + + + K+ + Sbjct: 1 MKKRTRMYVMSLVFGMALGALVGCSSKQDSNNESSSKVSEKAQENSDKNTAKKSFVFCTN 60 Query: 38 LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVS 97 + + + ++ + + ++ + D++K+ + + DA+ + V Sbjct: 61 TLNNSFQSSMDAKFKELCDKNGIAYTCLDPD--YDLNKQLSQLSDCANSGYDAVFVIPVD 118 Query: 98 ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIAN 157 +G + + S+A IP+ +T + ++ ++KYV+ ++ + G+ +G A + Sbjct: 119 SSGITAGLAEISDAKIPIYNVDTAVIEEDMNKYVTQFVGTNAFMAGELVGKQLA----SK 174 Query: 158 KIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLII 216 D KIA+++ + E CV R GF + L + IVA Q+G DK++ + E ++ Sbjct: 175 HPDGAKIAILDFPSNESCVDRVNGFMKGLGEQKDKFTIVAQQDGGAALDKSLGLAEDILT 234 Query: 217 STPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDIS 276 + DL+A + + LGA A++ N+ GK+ V+ D + E Q L + AV Sbjct: 235 ANSDLDAFFCINDPSALGAAAAIKASNKKGKVEVYSIDASPEGKQALLDGD-FTAVAAQV 293 Query: 277 GKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 ++ F + + + EK + + L K E K Sbjct: 294 PLQIAEHAFNEAMN--GEGKSSEKKVYLDSHLVDKEEAEK 331 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 123/318 (38%), Gaps = 21/318 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQL 64 M+ L S+ A+A +++ + + +++ AAK+ V +Q+ Sbjct: 1 MKKITILAAAMAFTMSSGLAQAQNEQIVF-STPNLAMPFEVHMQRTAVKAAKELGVNLQV 59 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + ++QG K+ ++ + R ++S N S V +A +PV+ + + Sbjct: 60 L--DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKT 117 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFE 183 + + + G+ +G D+ A + I ++ ++R +G Sbjct: 118 DKK----VPHFGANNYKGGQAIG----DFVKARFPNGADIVLLTGQPGSSSNIERTQGIR 169 Query: 184 EVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRN 241 + LK+ ++VA+Q G + + + E ++ S P I+ + LGA++A+++ Sbjct: 170 DSLKAGGSKYRLVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQS 229 Query: 242 QNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300 Q G++ V G D E + + L A D G AV ++ N Sbjct: 230 QGLKPGEVMVTGFDAVPEALARVRDGW-LAATADQRP---GYAVTQAMTQLTNNIRTKSA 285 Query: 301 VI--QVPIDLYTKTEDGK 316 + P + TK Sbjct: 286 ITGADYPPTMITKDNLND 303 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 136/326 (41%), Gaps = 24/326 (7%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAA--------EKEMTIGAIYLDTQG-YYAGVRQGVQ 52 + +L+ +++G ++ + E + IGA Y+ Y+ + + ++ Sbjct: 7 KVFVAIILSLVFCTSIIGICIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIR 66 Query: 53 DAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAG 112 +++ LI + + K+ + + VDAI ++ V G + A +AG Sbjct: 67 YVVEENGD--TLITRDPALSLDKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAG 124 Query: 113 IPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF 172 I D + +V D + G NK + I ++ ++ Sbjct: 125 ---IIIIAIDTDIYDDDLTACTVVSDNYKAGVLCAEDLM-----NKRNSANIILLEHKSA 176 Query: 173 EVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGA 231 + + R GFE+ +++ ++VA + L+ A+ V E +++ D++ IM + + Sbjct: 177 KSAIDRINGFEDAIRNN-KNFKVVARSDCDGQLETAMPVVENILLKQKDVDTIMALNDPS 235 Query: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291 LG + A+ +N G I V+G D + + + ++ ++ + A V S +K+G + Sbjct: 236 ALGGIMALEEKNIKG-INVYGIDGSPDGKKMVKEDK-MSATVSQSPRKIGRISGESLYNI 293 Query: 292 INKQADGEKVIQVPIDLYTKTEDGKQ 317 + +K I VP++L TK + Sbjct: 294 FQGKE-VDKKIVVPVELITKENIDEF 318 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 121/290 (41%), Gaps = 11/290 (3%) Query: 27 AEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 +MTI I + ++ V G Q AA V+ E ++ ++S++ + ++T ++ Sbjct: 40 QSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETAIS 99 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 N DAI+L+ + + RA ++GIPVI ++ N ++L D G++ Sbjct: 100 TNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMANTDN----YVSFLGSDNYTIGQR 155 Query: 146 LGNAAADYFIANKID-QPKIAVINCEAFEVCVQ-RRKGFEEVLKSRVPGAQIVANQEG-T 202 + A K+A I + ++ R GF + ++ P ++V+ ++ Sbjct: 156 SADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEAYPDIEVVSVRDAMG 215 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 + I++ L+ + PDL+ + + V+A+ Q + +A D + + Sbjct: 216 QVGNTINITLDLLTAYPDLDGLYANNQMTGDDMVRALDMQGR-NDLAAVAVDASAQEIWG 274 Query: 263 LENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 LEN L +V+ MG A A + + K + I + T Sbjct: 275 LENGY-LDSVLVQQPWVMGYAGVAYAV-MARNGVPLAKNVDTGILVITPE 322 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 128/296 (43%), Gaps = 8/296 (2%) Query: 25 RAAEKEMTIGA-IYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 + + IG I + ++ ++ ++AA+D +++++ E +A+ D + ++T+ Sbjct: 84 PKSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTM 143 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 V DAIILS + + A+EA IPVI ++ + + +L G Sbjct: 144 VTMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEAL-ADAGGHLDGKITVNF 202 Query: 144 KKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQE-G 201 ++ G+ A+ I+ D K+A++ E V R G + V G ++VA Q Sbjct: 203 EEQGSTVANDMISRMEDGGKVAILAGLEGAGQSVGRTNGAKTVF-ENTEGVELVAAQACD 261 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 +KA + ++ + PDL I + L AV+A++ + V+G D TT+ Sbjct: 262 WDTEKAYEATKDILTAHPDLKGIFACNDNMALAAVQALQEMG-NKDVMVYGVDYTTDAKA 320 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 +E+ ++ ++ S + +I + + + +P+ L T+ Sbjct: 321 AIEDGTMMGSMTYSSAIY--TKAAEEMAMLIVQGKTFKDPVYLPLTLVTQDNVADF 374 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 62/335 (18%), Positives = 128/335 (38%), Gaps = 29/335 (8%) Query: 4 KMRTTRNLLLMATLLGSALFARAA--EKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSV 60 + TR +L+++ L + L A A ++ IG + + + + Q A + Sbjct: 1 MLNITRRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFK 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V LI TNA+G +K+ + V++L+ + + +++SA + T+++ AGIPVI Sbjct: 61 DVDLIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLER 120 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRR 179 +D V+ ++ G G A+ + + I A V+R Sbjct: 121 -----SLDIPVTLHVGPHNKPIGTLAGKYIAEALK----GKGNVVEIKGDPAVAPAVERH 171 Query: 180 KGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTP--DLNAIMGESGGATLGAV 236 +GF E + +++A +KA+ E + P + A+ + GA+ Sbjct: 172 EGFAEAIAGT--EIKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMAFGAL 229 Query: 237 KAVRNQNQAGK-IAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT------- 288 +A++ + + I + G D + + + + G Sbjct: 230 RAIQAAGRDKEGILIIGIDGENAAIRAVAKGDLTATFTYSTVAPEGVIAAHALATNDTAA 289 Query: 289 ---LKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 L + K+ DG I++ + TK + + Sbjct: 290 LEKLGTLTKKDDGSMEIEIASKMITKENAAEFFCK 324 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 116/296 (39%), Gaps = 14/296 (4%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 A +K + + +Y + QG + AA + V++ + + + ++ + +D Sbjct: 30 ATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDEQ 89 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDK---YVSAYLVGDPL 140 +A +DA++++ + RA+E G+ ++ + I+ + + ++ D Sbjct: 90 LAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDNE 149 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 G + G A+ K +I + +RR G L+ ++VA++ Sbjct: 150 FGGYEAGKILAEL----AGPDAKALIIEGPRSAINARERRDGARRALQEN--NIEVVASE 203 Query: 200 EGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 + + A ++ + + P+LN I + LGA+ + + G D + Sbjct: 204 VASWKLESAYALTQNVHARNPELNVIFAANDMMALGALLYAQEHGLNDW-LIAGFDNIPD 262 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTED 314 + + L +D + G A + ++N +A + V+ V + T ++ Sbjct: 263 ARAAVREGR-LAVTIDQQADRQGYQGVATAVDLLNDKA-VDDVVLVKTRVITADDN 316 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 60/301 (19%), Positives = 122/301 (40%), Gaps = 16/301 (5%) Query: 21 ALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFV 80 AR + + + +Q ++ +R+ ++D A V+VQ++ +AQ + SK+ + + Sbjct: 29 TGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVL--DAQNNSSKQISDL 86 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + +I++ + E G+ VI + I ++ D + Sbjct: 87 QAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKT---AVPHVGADNV 143 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 G+ A AD+ + ++ VI N ++R KG + L + P +IV Q Sbjct: 144 AGGR----AMADWVVKTYPAGARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQ 199 Query: 200 EGTV-LDKAISVGEKLIISTPDL--NAIMGESGGATLGAVKAVRNQNQ-AGKIAVFGSDM 255 D+A++V + ++ S D + I+ + +GA++AVR + K+ V G D Sbjct: 200 TANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKVIGFDA 259 Query: 256 TTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 E ++ + + A V+ + Q + I A + V P+ L T Sbjct: 260 IPEALARIKAGE-MVATVEQNPGLQIRTALRQAVDKIKSGAALKSVSLKPV-LITSGNLT 317 Query: 316 K 316 + Sbjct: 318 E 318 >UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YAA5_DICT6 Length = 331 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 54/322 (16%), Positives = 111/322 (34%), Gaps = 21/322 (6%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSS---- 59 M+ + + + K++ I + R G A++ S Sbjct: 1 MKKFLMIFFIVVIFLLMATTAQTPKKLVFAWIPKALNNPVFELGRDGAFKRAEELSKKGP 60 Query: 60 VQVQLIETNA-QGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 +V+++ + D ++++ V+ +VAR VD I +S + +A EAGIPV+ + Sbjct: 61 YKVEVLYVASVASDATEQARVVEDVVARKVDGIAISCNDPTALIDVINKAVEAGIPVMTF 120 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQ 177 + + YL + E G AA + +A++ + Sbjct: 121 DADSPKSKR----FTYLGVNNYEGG----KWAAKLLVRAMGTSGDVALLTGVPGALNLEE 172 Query: 178 RRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIM--GESGGATL- 233 R +GF++ +K + P +IV +++ + V E+ + P L G Sbjct: 173 RMRGFKDEIK-KYPKIKIVTTVACYDDINRGVQVVEETMQKYPKLRGWFFVGLWPLLAER 231 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 G++ +A K+ D Q L+ + +V G + + Sbjct: 232 GSMPLWEKAAKAKKVFTVAFDTLPVELQLLKEGYLC-GLVGQKYWGWGYDAIDILYRKVV 290 Query: 294 KQADGEKVIQVPIDLYTKTEDG 315 I +D+ T+ Sbjct: 291 NNEKFPDWIDSGMDIVTQKNVD 312 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 29 KEMTIGAIYL--DTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 ++ +G + + AG + V+DAAK V+ +LI TNA + S++ V+ ++ + Sbjct: 54 SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVR-RLIYTNAHSNQSRQVADVENMINQ 112 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 A+I++ + G +A+ IP++ + Y+ ++L + K Sbjct: 113 GAQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRRTAGSKCSDYL-SFLGSNFY---FKQ 168 Query: 147 GNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-L 204 G A +A I V V R KGF LK+ PG +IV Q G Sbjct: 169 GEIDARELAKATGGHAMVAEIQGAYGNSVEVARTKGFAAGLKA-YPGMKIVTEQTGNWFT 227 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-GKIAVFGSDMTTEIAQEL 263 A V +++++ P++NA+ ++ GA+ A+R+ + G++ + D T + Q++ Sbjct: 228 TDAQKVMSQILLAHPNVNAVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTRQGVQDI 287 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYT 310 + + A + + + G F + + + + I + +YT Sbjct: 288 VDGWIY-ADDETNPR-FGPIAFHELQNWFDGK-PVPRHIVLTDHIYT 331 >UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83 Tax=Proteobacteria RepID=B2JDH5_BURP8 Length = 321 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 120/319 (37%), Gaps = 20/319 (6%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEM--TIGAI-YLDTQGYYAGVRQGVQDAAKDS 58 P +R L A +LG+ L A AA IG Y+ +++ + DAA Sbjct: 14 PRTLRLRATLAFAAVMLGTPLLAPAAADAAPLKIGMTFQELNNPYFVTMQKALNDAAASI 73 Query: 59 SVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICY 118 V + T+A D+SK+ + V+ ++ + +D ++++ G V A +A Sbjct: 74 GATVVV--TDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKKA-----GA 126 Query: 119 NTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQR 178 + V +++ + G+ A ++A+++ ++R Sbjct: 127 VVVAVDANANGPVDSFVGSKNFDAGQMSCEYLAKAI----GGSGEVAILDGIPVVPILER 182 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVK 237 +G + L + P ++V Q G A+SV E +I + P+L I + G ++GA+ Sbjct: 183 VRGCKAALA-KFPNVKVVDTQNGKQERATALSVTENMIQAHPNLKGIFSVNDGGSMGALS 241 Query: 238 AVRNQNQAGKIAVFGSDMTTEIAQELEN-NQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A+ + + I + D E ++ N + L A Sbjct: 242 AIESSGK--DIKLTSVDGAPEAITAIQKPNSKFIETSAQFPRDQIRLAIGVALAK-KWGA 298 Query: 297 DGEKVIQVPIDLYTKTEDG 315 + K I V + L K Sbjct: 299 NVPKTIPVDVKLVDKDNAK 317 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 118/326 (36%), Gaps = 26/326 (7%) Query: 6 RTTRNLLLMATLLGSALFARAAEKE----MTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQ 61 R + L + A AAEK + I T ++ +++G + AA ++ Sbjct: 6 RLLMAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAARLGLE 65 Query: 62 VQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTC 121 ++ GD + T V++L+A I+++ + +A GI VI +T Sbjct: 66 LRSFAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVIALDTP 125 Query: 122 INQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAV--INCEAFEVCVQRR 179 ++ G A D + GK +G AA AN K+A+ +N V V R Sbjct: 126 LDPPGA---ADATFATDNVLAGKLVGEWAAKTLGANA-KSAKVALLDLNVNQISVDVDRD 181 Query: 180 KGFEEVLKSRVPGAQIVANQEG----------TVLDKAISVGEKLIISTPDLNAIMGESG 229 +GF + V ++ +++ + E L+ P ++ + + Sbjct: 182 QGFLKGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPYVSVVYAINE 241 Query: 230 GATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL 289 A GA +A+R+ + + V D + +++ V+ A M L Sbjct: 242 PAAAGAYEALRSIGRDKDVLVVAVDGGCPGVRNVKDG-VIAATAMQFPLAMAQMGVEAVL 300 Query: 290 KVINKQADGE-----KVIQVPIDLYT 310 K + + ++L T Sbjct: 301 KYATDGTKPKPADGQDFVNTGVELVT 326 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 115/319 (36%), Gaps = 13/319 (4%) Query: 7 TTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIE 66 R ++ + +A A A + IG + A + Q ++D A ++ +Q+ Sbjct: 1 MKRMIIGTTAMFLAASSAYAGD----IGVTIASNDTFLAVMVQAMKDEAAKTNQPLQVEF 56 Query: 67 TNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG 126 +A D++K+ + + +A VDAII++ V + + A++AGIP++ N + Sbjct: 57 ADA--DVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLD 114 Query: 127 VDKYVSAYLVGDPLEFGKKLGNAAADYFIA--NKIDQPKIAVINCEAFEVCVQRRKGFEE 184 +A++ ++ G D + + A QR K + Sbjct: 115 QLGPKAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHD 174 Query: 185 VLK-SRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 V+ +I+ Q KA + I + A++ + LGAV +++ Sbjct: 175 VVATPECNFMKIIDEQTAQWDPVKAQDLMTNWITAGHKPVAVLSNNDDMALGAVNSLKAA 234 Query: 243 NQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKV 301 + V G D T E ++ L A V G +K+ + E Sbjct: 235 GWEMKDVIVAGIDATKEAMHYVKTGD-LDATVFQDAVGQGAGSVDAAIKLAKGEK-VESP 292 Query: 302 IQVPIDLYTKTEDGKQWLA 320 + +P +L Sbjct: 293 VWIPFELVNAANVDTYLNK 311 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 117/314 (37%), Gaps = 26/314 (8%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQ 63 M+ L+ + ++ + +K+ IG + + + ++ A + V+ Sbjct: 1 MKHPFLLVWLTLIVLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYD-DVE 59 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 +I +AQ + + + L+ + VD +I+S + A AGIP I + +N Sbjct: 60 IIIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKVN 119 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEA-FEVCVQRRKGF 182 ++++ + E G GN AA+Y I I +R KGF Sbjct: 120 TDQ----YTSFVGANNYEIGLAAGNYAANYL----PPNAIILEIWGLTQTSPAQERHKGF 171 Query: 183 EEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPD-LNAIMGESGGATLGAVKAVRN 241 + L+ R + ++D A KL P+ ++ + + + A + Sbjct: 172 VDALRER-EDLSFRKIEGQWLVDTARMELRKL--EHPEQIDFVYAHNDMMAIAAREYFMA 228 Query: 242 ----QNQAGKIAVFGSDMTTEI-AQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 + + ++ + G D + +E+ ++ + + +G G V +++I + Sbjct: 229 WDSIRGR--ELRIIGVDAVAGAGLEAVEDGRINASFLYPTG---GEQVIRTAMRIIQGE- 282 Query: 297 DGEKVIQVPIDLYT 310 +K I + Sbjct: 283 PVDKFIPLRTAPVD 296 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 141/342 (41%), Gaps = 32/342 (9%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAE----------------KEMTIGAIYLD-TQGY 43 M ++++T LL++ ++L A + + ++T+GA D T + Sbjct: 16 MSKRLKSTAILLVIVSMLVCACSSGGGKADTEKTEKKTEDSGNKDKITVGATLSDFTISF 75 Query: 44 YAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR 103 A + + DA K+ ++ I + D + + ++T + + VDAI+++AV + Sbjct: 76 QAAMYNELLDAQKEYD-NIEFILQDGASDSALQVNQIETFITQGVDAILINAV-SDAVEP 133 Query: 104 TVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPK 163 ++++A EAGIPV N I + Y ++ + G+++ N D +++D Sbjct: 134 SLKKAMEAGIPVFAVNRSITDENAYSY---FIGANDTLSGEQMANCLLDMIEKDQMDSCN 190 Query: 164 IAVINCE-AFEVCVQRRKGFEEVLKSRV--PGAQIVANQEGT-VLDKAISVGEKLIISTP 219 I I R+ GF+ ++ + G I+ + IS + ++ P Sbjct: 191 ILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILERIPCKHDKETVISSIQNMLNKYP 250 Query: 220 --DLNAIMGESGGATLGAVKAVRNQNQAGKI-AVFGSDMTTEIAQELENNQVLKAVVDIS 276 +++AI+ E +GA++AV++ + + + G DM TE+ ++ ++ V Sbjct: 251 AGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIVGMDMPTEVWDAIKAGKIY-GTVLQD 309 Query: 277 GKKMGNAVFAQTLKVINKQAD--GEKVIQVPIDLYTKTEDGK 316 + D EK I+ + + T Sbjct: 310 PAEQCEVGIKTIETYFFGDKDSLKEKFIETDLPMVTSENVND 351 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 77/303 (25%), Positives = 130/303 (42%), Gaps = 17/303 (5%) Query: 24 ARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDT 82 KE+TIG + Q ++ ++Q V+ K V++ I +AQG+ S + + ++ Sbjct: 22 GSTWAKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKI--ITVDAQGNSSTQVSQIED 79 Query: 83 LVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEF 142 L+ R +DA+I + V+ A AGIPVI + D ++ D + Sbjct: 80 LITRQIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGD----TFIASDSVAG 135 Query: 143 GKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 A A+Y + +IA++ + R KGF+E LK PG ++VA Q Sbjct: 136 ----AKALAEYVGKVTDGKGRIAILQGQLGTTPENDRAKGFQEGLKG-FPGLKVVAEQPA 190 Query: 202 TV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIA 260 DK +V + L+ P++ G + LGA +AV+ N + + V G D Sbjct: 191 EWAQDKGFAVAQDLLQRDPNITVFFGRADAMALGAAQAVKVANLSQPVVVVGFDGDVAGL 250 Query: 261 QELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 + + + VL+A + +KMG A L + +A K + L TK +L Sbjct: 251 KAVASG-VLQATMTQQTQKMGRMAVASALDLKAGKA-VPKEQLLETVLTTKDNVAP-FLQ 307 Query: 321 THV 323 H Sbjct: 308 QHP 310 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 9/316 (2%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60 M + L L + A AA + + + Y+A +G Q A + Sbjct: 1 MNLRKSILSCLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAADGL 60 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 +V + TN D ++++T V+ +A+ D I+L V + ++R+ +A IP++ N+ Sbjct: 61 KVDVKVTN--YDANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNS 118 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANK-IDQPKIAVINCE-AFEVCVQR 178 +QK +Y + + + G+ A F D+ K+ VIN VQR Sbjct: 119 MPDQK-YSRYWKVFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQR 177 Query: 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLI-ISTPDLNAIMGESGGATLGAVK 237 +GF + LK PG ++V Q + D+ + E+ G V Sbjct: 178 YQGFVDGLKKNAPGIEVVGAQPADWDAVKAEAAASALFTQFKDVKGVYTENDSQLRGVVT 237 Query: 238 AVRNQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA 296 A + K+ + G + + + A V+ S G L++ + Sbjct: 238 AAQRLGLEPSKLVIVGHGCDAGGVEAISAGKAY-ATVEQSPFDDGAYAAKAALELATGKT 296 Query: 297 DGEKVIQVPIDLYTKT 312 V +P + TK Sbjct: 297 P-RAVQYLPNPIATKA 311 >UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=9 Tax=Bacillales RepID=C6CRC9_PAESJ Length = 337 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 106/292 (36%), Gaps = 23/292 (7%) Query: 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101 Y+ +G +DAA+ V V+ + Q D+ +E ++ ++AR+ I +SA+ Sbjct: 56 DYWKNGLKGFEDAAEALGVSVEYRG-STQYDVQEEMMVLEQVIARSPAGIAVSAIDSEAL 114 Query: 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161 + + +A EAGIPV+ ++ + +Y+ + G A+ Sbjct: 115 NPAINKAVEAGIPVVMFDADAPRSKA----YSYIGTNNYNAGVTAARKMAEL----TGGT 166 Query: 162 PKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIISTPD 220 K+ VI +R +GFEE L+ P Q+V +G + L+ D Sbjct: 167 GKVGVITLPNQLNHQERTRGFEETLEKEFPDLQLVGIADGKGDQMISEQKVRDLLSKFTD 226 Query: 221 LNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 L+ I +GA A+ N+ ++ + D +++ + A + M Sbjct: 227 LSGIFVTEANGGVGAGNAILRLNKLDQVKIISFDTDKGTLDMVKSGTI-SATLAQGTWNM 285 Query: 281 GNAVFAQTLKVINKQA------------DGEKVIQVPIDLYTKTEDGKQWLA 320 G Q + N I I + T + + + Sbjct: 286 GYWSLMQLFHLRNHIVNPMSDNGDSSIPPLPTNIDTGITVVTPGDVDQFYAK 337 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 120/315 (38%), Gaps = 12/315 (3%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDAAKDSSVQVQ 63 M T R L + + +A AA E TI I +T + + G + A + + V+ Sbjct: 1 MITKRMLGRLTIAMATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFI 60 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 + +G++SK+ V+ ++ R V+AI ++ V G + + +A AGI V+ +T I+ Sbjct: 61 ELAAE-KGELSKQLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGIS 119 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 +++Y+ D ++ G+ A+ I V + +R+KGF Sbjct: 120 GAK----ITSYVATDNIKAAMVQGDWTAEQIKD---GDTVIYVTGDQGQSTGQERKKGFL 172 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQN 243 + L ++ ++V A + E + + P I G LGA A+ Sbjct: 173 DGLNAKRKNVKVVEVATTWDQTMAQNGVETALRANPTAKVIACAWDGGALGAKAALMAAG 232 Query: 244 QA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI 302 + G + + G D + ++ A K+G + + E I Sbjct: 233 KKAGDVKIAGFDGSPGGLDMMKQGWQ-SANAAQMLAKIGQVGVETAIAAAEGKK-VEARI 290 Query: 303 QVPIDLYTKTEDGKQ 317 L + + Sbjct: 291 DTGSFLVLPSNVDQF 305 >UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG89_9CLOT Length = 349 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 118/299 (39%), Gaps = 15/299 (5%) Query: 22 LFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 +K+ G + ++ GV++ K + ++ + + D + + ++ Sbjct: 57 AAGTEEKKQYKFGFTEMSAGSFFDACYSGVEEVVKANGDEIVHV--EGKADSAYQLGVIE 114 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 +++ D + + S+ V+ ++AGIP++ +++ ++ V+ ++V D Sbjct: 115 DFISQGCDLVFYNPSDAAASAAAVKALNDAGIPIVNFDSAVSD---LSKVNCFVVSDSYS 171 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 G+ G I N + K+AV++ A R KGF + + + + G Sbjct: 172 CGQIAGEE----LIKNHPEGGKVAVLDFPASAAAADRAKGFVDTVTADGLFEVVAQMDAG 227 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 +K ++V + L+ + DL A+ + GA A+ KI ++ + E Sbjct: 228 AKPEKGLTVMQDLLQAHSDLTAVFCINDECAQGAYSAITTAG--DKIEIYSVNAGPEAKA 285 Query: 262 EL-ENN--QVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + ++ + K S +G K++N ++ E I++P T + Sbjct: 286 AMTKDGVDGIWKCTAAQSPIGIGQKSAEVAYKILNGES-YESEIKIPSFAVTPENIDQY 343 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 135/333 (40%), Gaps = 27/333 (8%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA---------------EKEMTIGAIYLDTQGYYA 45 M KM + M + + + + E + + Sbjct: 2 MKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFMV 61 Query: 46 GVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTV 105 G+ + ++ + + +VQL+ +A D +K+ + ++T ++ N +AI++ S +G + + Sbjct: 62 GMAENFKEVGEAAGYEVQLM--DADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGL 119 Query: 106 RRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIA 165 + A +AGIPV + ++ + V++ + D + G + I + + KIA Sbjct: 120 KEAHDAGIPVFVIHNNVSATDL---VTSLIHVDVRQGG----ELKMEQVIKDCGEDAKIA 172 Query: 166 VINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAI 224 ++ + + G + + + P ++V G A + E + S +++AI Sbjct: 173 IMTGTLGQDTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLASGKEIDAI 232 Query: 225 MGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAV 284 + + G LG V +++ ++ +I V+G D T E + +++ + + A + + K Sbjct: 233 VCNNDGMALGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGE-MAATIYVDSKAEIEKA 291 Query: 285 FAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 F + + +VP L TK + Sbjct: 292 FEMLED-LKAGKKVDAEYKVPSVLVTKENVKEY 323 >UniRef50_C1XTQ0 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Bacteria RepID=C1XTQ0_9DEIN Length = 312 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 120/293 (40%), Gaps = 13/293 (4%) Query: 27 AEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 A+K++TI I Y+ QG ++AA + + + +G + K+ ++ + Sbjct: 8 AQKQITIAMIPKLVGIDYFNATEQGAKEAAAELGNIRLIYQGPTEGRVDKQIELIENFIT 67 Query: 86 RNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKK 145 VD I ++A + + +A +AGI V+ ++ N + V + + Sbjct: 68 AKVDVISVAANDPVAIAPVLEKARKAGIKVVTWDADANVRDVFCNQATFAG--------- 118 Query: 146 LGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKG-FEEVLKSRVPGAQIVANQEGTVL 204 +G A D + ++A++ ++VL PG ++V + Sbjct: 119 IGKALVDEMARQVGKEGEVAIVTSSLTAPNQNAWIAEMKKVLAKDYPGLKVVDTKPSEED 178 Query: 205 DK-AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 + A V + L+ + P+L + S A GA +AV+ +AGK+AV G ++ + Sbjct: 179 QQLAFRVTQDLLKAYPNLKGVWALSSVAFPGAAEAVQQAGKAGKVAVVGLSTPKQMKPFM 238 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + V+K+VV + +G +++ K I +T +D K Sbjct: 239 KAG-VIKSVVLWNPIDLGYLSVYAAKQLVEKGLKEGDKIVTKRGTFTVQKDDK 290 >UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridium phytofermentans ISDg RepID=A9KIC5_CLOPH Length = 325 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 134/320 (41%), Gaps = 18/320 (5%) Query: 1 MP-TKMRTTRNLLLMATLLGSALFARAAEKEMTIGAI-----YLDTQGYYAGVRQGVQDA 54 M K+ +L+ L ++ R EK I D+ +++ + +G Q A Sbjct: 1 MKHKKIFLISASMLLTLSLAFFIYIRTLEKPKQYYMICIPKVLDDSSDFWSVLVEGAQMA 60 Query: 55 AKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIP 114 AK+ ++++ + + D ++ ++ + R D I+L+A + + +AGI Sbjct: 61 AKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIK 120 Query: 115 VICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVIN-CEAFE 173 +I ++ + Q D + D ++ G ++G + KI VI+ + + Sbjct: 121 LIVIDSGMKQDIADI----TVATDNIQAGIRIGAVTKNLVRK----SGKIGVISFVKNSK 172 Query: 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATL 233 + R +G + L + + + DKA +L+ PD++ ++G + + Sbjct: 173 TAMDREEGLKIGLSDDSNKIEAIYYCDSN-YDKAYDGTVELLTKYPDISVMVGLNQYSAT 231 Query: 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIN 293 GA +A+++ + K+ + D + E Q LE + +A+V +G + LK++ Sbjct: 232 GAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEG-IFEAMVVQKPFNIGYLGVEKALKLLK 290 Query: 294 KQADGEKVIQVPIDLYTKTE 313 K+ K + L TK Sbjct: 291 KEY-VPKQLDSGCALITKDN 309 >UniRef50_UPI0001973330 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973330 Length = 325 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 123/297 (41%), Gaps = 11/297 (3%) Query: 19 GSALFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKES 77 G+A ++ + I T+ ++ V G AA + +V + ++ D + ++ Sbjct: 24 GTAAHMSRRQERYQVAMIVKSTESAFFQSVFAGAGAAATEYNVSLITEGPESEEDYATQN 83 Query: 78 TFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVG 137 + V DA+++SAV N ++ V A+ GIPV+ ++ +N V + Sbjct: 84 EMIYKAVENGADALVISAVDFNKNAEAVDWAAAKGIPVVVIDSDVNSSA----VKFRIGT 139 Query: 138 DPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIV 196 D E G+ AA D + I ++N E QR +GF E K +IV Sbjct: 140 DNEEAGRMAARAALD----GTDGELFIGIVNFDENTANGQQREQGFREEAKKDSRVKEIV 195 Query: 197 ANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMT 256 + +D + + L+ + P++N I + +LG A+R+ N+ I+V D Sbjct: 196 TINVPSAIDDTRAATKGLLSTHPEINVITTFNEWTSLGVGWAIRDLNKKDDISVVAFDSN 255 Query: 257 TEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE 313 LE +V A++ + MG + ++++++ + L T+ Sbjct: 256 AVSVGMLETGEV-DALIVQNPYAMGYLGVEKAWEILSRRGVEGDKLDTETTLVTREN 311 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 114/289 (39%), Gaps = 13/289 (4%) Query: 30 EMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVD 89 I Y+ + QG ++A K+ V ++ I + + ++ ++ +A VD Sbjct: 53 PHVILISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPL-RTSVDEQVKLLEKAIASRVD 111 Query: 90 AIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNA 149 II+ + + + +A IPVI + + AY+ + E G+ LG A Sbjct: 112 GIIVQNLKDEAFIPLIDKAISRNIPVITIDADAPKSRR----IAYVGTNNFEAGQLLGKA 167 Query: 150 AADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAI 208 + +I + E R +GF V+ P ++V+ +A Sbjct: 168 VVSRVEGERELG---VMIGTDTSENQRLRLQGFLSVIAEH-PRLKVVSVASSNISRIQAS 223 Query: 209 SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268 E+++ P ++ ++G S +G A +N ++ I +FG D E + ++ + Sbjct: 224 IQAEQMLRKHPHISVMVGTSALDAIGIRMATKNLHRQD-IQIFGFDDVEETIEAIQQGDI 282 Query: 269 LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + A V MG + ++ ++ + +K I++ + ++ Sbjct: 283 V-ATVVQKPYDMGYSAVKLMVEHLSGK-QIQKEHFTAIEVIDRQNVQQE 329 >UniRef50_A3DI69 ABC-type sugar transport system periplasmic component-like protein n=4 Tax=Clostridium RepID=A3DI69_CLOTH Length = 372 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 16/289 (5%) Query: 31 MTIGAIYLDTQGYYAGVRQGVQDAAKDS---SVQVQLI-ETNAQGDISKESTFVDTLVAR 86 I Y + +Y ++ G+ A K+ V V AQ D + ++T + + Sbjct: 80 YKIYCTYKNIHAWYDAIKCGIDAAVKELAEKGVTVDYEWYGPAQPDAVDQVNSIETAIGQ 139 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLV-GDPLEFGKK 145 D I + + + A GIPV + T + + ++ DP G Sbjct: 140 GWDLIAVDVNQPELTGEAINNAVAKGIPVAVFGT---SDVPNCDRAFFVGNTDPYGDGCA 196 Query: 146 LGNAAADYFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQ-EGTV 203 L A + + +IA++ +R +GF++ + + P +IV Q + Sbjct: 197 LAKAVCE----KMGGKGQIAILAGTIGALAHEERLRGFKDTIA-KYPDIEIVDEQRDNDE 251 Query: 204 LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL 263 ++KAIS+ E + + P+L I+ + +GA +AV + ++GKI + G D L Sbjct: 252 VEKAISITESWLQAYPNLGGILCNNMSNPVGACQAVADAGKSGKIVIGGMDHDLRALNAL 311 Query: 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKT 312 ++ + A V + MG + +K I+ + E +Y + Sbjct: 312 KDGTLYVAQV-QNCYDMGYKLIYNAIKTIDGEKVEESTAVGSTSVYAQD 359 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 123/328 (37%), Gaps = 24/328 (7%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARAA------EKEMTIGAIYLD-TQGYYAGVRQGVQD 53 M + L + A+ + + +G + ++ + + + Sbjct: 1 MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60 Query: 54 AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGI 113 A+ +V ++ + D K++ + +++ VDAII++ + ++ A+ A I Sbjct: 61 EAEKHGYEVIILSGD---DAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEI 117 Query: 114 PVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE 173 PV +T G V ++ D GK A D + K+ +++ + + Sbjct: 118 PVFTADTGCTDPGAK--VVCNVMTDNFGGGKLAAQAMIDVL----PNGGKVLILDFKKAQ 171 Query: 174 VCVQRRKGFEEVLKSR-----VPGAQIVANQEGTVLDK-AISVGEKLIISTPDLNAIMGE 227 C+ R GF+EV+ IVA +G ++ + E + +TPDL + Sbjct: 172 SCLLRVDGFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKGVFAI 231 Query: 228 SGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQ 287 + + LGAV A++ N+ + + G D + + ++ A ++G Q Sbjct: 232 NDLSALGAVVALKKANKLQDVKIIGFDGLRIGKEAILRGEI-HADPIQFPSEIGKLTVQQ 290 Query: 288 TLKVINKQADGEKVIQVPIDLYTKTEDG 315 L N I + LY + + Sbjct: 291 ILAYKNGDEVKP-EILIATKLYYQEDAK 317 >UniRef50_B9DT58 Putative extracellular sugar-binding protein n=1 Tax=Streptococcus uberis 0140J RepID=B9DT58_STRU0 Length = 322 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 122/296 (41%), Gaps = 14/296 (4%) Query: 28 EKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 ++ +++G Y+ +Y + ++ + + ++ + +K+ + + Sbjct: 35 KQRLSVGTTYMTMNNPFYQVINAEIEKEITEKGG--IVYTRDSSLNSAKQVEQLHYFIKT 92 Query: 87 NVDAIILSAVSEN--GSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGK 144 VD I+++ V + V A + GI VI ++ ++ D V++ +V D G+ Sbjct: 93 GVDVIVINPVKSKDRNIKKAVEEAEQKGIKVIVIDSQLS---KDVKVTSTIVSDNYHAGE 149 Query: 145 KLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVL 204 L +K +I ++ + QR KGF + + ++ + + Sbjct: 150 LLAKDLM-----SKKTSARILLLEHKDAVSGEQRIKGFLDTISAQSQFKVMTKLESLGQT 204 Query: 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE 264 + A+ EK+I S D + IM + A +GAV A+ Q I V+G D + ++ L Sbjct: 205 EIAMPAVEKIIQSQKDFDVIMALNDQAAIGAVAALDKQKVDHPILVYGVDGSPDMKNLLA 264 Query: 265 NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLA 320 + A V S KMGN +KV N ++ KV VP+ + TK Sbjct: 265 TTSDVTATVSQSPLKMGNQTARIAIKVANGESVPSKVT-VPVKIITKKNIQDFDTK 319 >UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Thermotoga RepID=B1LAH5_THESQ Length = 343 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 116/321 (36%), Gaps = 35/321 (10%) Query: 28 EKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 ++MTI Y+ V G++DAA+ ++ + D +K++ + + + + Sbjct: 20 SEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIKAIFDAP-VEADAAKQAEKILSYIVK 78 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKL 146 VD I +S G V+RA + GIPVI +++ G AY+ + G + Sbjct: 79 GVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSGRY----AYIGTNNYNAGYEA 134 Query: 147 GNAAADYFIANKIDQPKI---AVINCEAFEVCVQRRKGFEEVLKS--RVPGAQIVANQE- 200 G A + ++ I + A +R +GF++ L+ + G +IV + Sbjct: 135 GKLMAQLIEKYRAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIVYVADP 194 Query: 201 ---GTVLDKAISVGEKLIISTPDLNAIMGESGGATLG----AVKAVRNQNQAGKIAVFGS 253 KAI + + DL+ G + A+ + + V G Sbjct: 195 FPCDDDSAKAIQIIRDVTRKYTDLDGWFMSGGWPLFAPKETVISALGGPERMKDLLVVGF 254 Query: 254 DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTL---------------KVINKQADG 298 D + ++ V K +V MG KV+ + Sbjct: 255 DTLLPELELVKAGAV-KGLVGQRPYDMGYLSVLVLYNMAKIGVENTLKMLPKVVKEDGTV 313 Query: 299 EKVIQVPIDLYTKTEDGKQWL 319 + +I +D+ T+ + + Sbjct: 314 DYIIDTGVDIVTEENVDQFYE 334 >UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Y2_9CLOT Length = 341 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 130/335 (38%), Gaps = 28/335 (8%) Query: 2 PTKMRTTRNLLLMATLLGSAL-----------FARAAEKEMTIGAIYLDTQGYYAGVRQG 50 K+R ++L + L + +G + ++ + Sbjct: 6 KRKLRLISSVLAVLVFLSGCGQDFHKEGEQDDVISKDDSLTVVGVSQIGSESVWRTANTA 65 Query: 51 VQD--AAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRA 108 +K++ LI NA+ + + + +++ VD I+ S + E+G ++ A Sbjct: 66 SIQNTFSKENGY--FLIFDNARQKQENQIKALRSFISQQVDYIVFSPIVEDGWDTVLQEA 123 Query: 109 SEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIA--NKIDQPKIAV 166 +AGIPVI + + K + +A++ D E G+ G A + ++ I V Sbjct: 124 KDAGIPVILMDRKVKVKD-ESLYTAWVGSDFAEEGQNAGRWLAGHLKEEGRAGEEINIVV 182 Query: 167 INC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAI 224 + + R +GF + + ++ I+ + K +K++ D++ + Sbjct: 183 LQGTNGSTSVIGRTEGF-DSVAAQHDNWNILEQADADFTTAKGREEMKKMLHKYEDIDVV 241 Query: 225 MGESGGATLGAVKAVRNQNQA----GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKM 280 + ++ T GA++A+ Q+ G I + D T +++E ++ ++ + ++ Sbjct: 242 VSQNDDMTFGALEAIGEAGQSTGTDGGIILISFDATKSALEKVEQG-IINVDIECNPEQG 300 Query: 281 GNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 + ++V+ EK V ++TK Sbjct: 301 AY--IEEVIRVLESGGQAEKEYFVSERVFTKKNVA 333 >UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic component n=2 Tax=Clostridiales RepID=C4ZH94_EUBR3 Length = 325 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 117/331 (35%), Gaps = 21/331 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSAL---FARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKD 57 M K+ ++LL L + A + I + + Q A Sbjct: 1 MKRKLAYMLSILLCGVFLATGCGSQTTGAGSSNVKILLSVNAIDDFRQTLVDTAQQEADA 60 Query: 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117 VQ+ + +A+ +I + + A DAI+ VS + + +A+ IP++ Sbjct: 61 RGVQLDVF--DAEDNIENQVEHIKKAAAEGYDAILCGPVSTDTAVEL--KANAGDIPIVF 116 Query: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-AFEVCV 176 +N+C N+K + + Y+ D G+ D F D+ + + + Sbjct: 117 FNSCPNEKQLSEGQYIYVGSDESVAGQYQAEYVLDKFADR--DEINVVIFKGPKGHSATI 174 Query: 177 QRRKGFEEVLKSRVPGAQIVANQEGTVL-DKAISVGEKLIISTPDLNAIMGESGGATLGA 235 R KG ++ L++ V D A + E + + + ++ + G LG Sbjct: 175 GRTKGVKKTLEASGKKINYVFEDYANWDGDTAGEMFELFLKTGSKADCVICNNDGMALGV 234 Query: 236 VKAVRNQNQA-GKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK 294 ++A +N + + G D T + +EN + V SG G A K+I+ Sbjct: 235 IEACKNAGIDLNSLPILGVDATADGCTAIENGD-MAFTVYQSGSGQGKAAIDAARKLISG 293 Query: 295 QADGE--------KVIQVPIDLYTKTEDGKQ 317 Q+ + + VP + Sbjct: 294 QSVQDIEGAADDGLYVWVPFEKVDSNNVSSY 324 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 130/328 (39%), Gaps = 19/328 (5%) Query: 5 MRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQ 63 M+ LL+A + S + A + + IG ++ G+ + ++ AK+ Sbjct: 1 MKKRLIGLLLAGVTISMSVSAA--EPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGY--T 56 Query: 64 LIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCIN 123 LI T+A+GD++K+ V+ ++++ ++ +IL+ R A AG+P + ++ I Sbjct: 57 LITTDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDI- 115 Query: 124 QKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE 183 ++ V + + + +G A F ++ I + + V RR F Sbjct: 116 --ALEAPVITRVQANNAKNNNLIGEYAVGQFGDKPMN--CIFLSGNQGNLVGQARRDNFL 171 Query: 184 EVLKS------RVPGAQIVANQEGTVLDK-AISVGEKLIISTPD-LNAIMGESGGATLGA 235 + ++ G + + E +I++ D +N + E LGA Sbjct: 172 LGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGDKINCVYSEMDDMALGA 231 Query: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQ 295 ++A++ N+ + V+ D + + ++ + L+A + + + V + Q Sbjct: 232 IRALKAANKLDNVKVYAHDGYKKGLEAVKKGE-LQATASNNPDLLTSTVLEVIGQYQAGQ 290 Query: 296 ADGEKVIQVPIDLYTKTEDGKQWLATHV 323 + +P L TK K + + Sbjct: 291 TSFPDYVYIPSILITKDNVDKYYKEDSI 318 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 129/307 (42%), Gaps = 18/307 (5%) Query: 15 ATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVR-QGVQDAAKDSSVQVQLIETNAQGDI 73 A+ +A A E+ +G + + + +Q A+ VQL+ + Q Sbjct: 30 ASSAEAAGRKPKALTEIVVGFSQTGAESSWRIAHSKSIQAEAEKRH--VQLLFADGQNVH 87 Query: 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133 + + V+ + + VD I+++ G T++ A AGIPV+ + ++ + + Sbjct: 88 NNQVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAE--EDLYET 145 Query: 134 YLVGDPLEFGKKLGNAAADYFIANKIDQPKIA-VINCEAFEVCVQRRKGFEEVLKSRVPG 192 +V D + G++ G + + +I ++ A +V V R+ GF E + + P Sbjct: 146 VMVADFVWEGRRAGE----WLAKQTNGKARIIELVGTPAADVAVMRKTGFAEAIA-KHPD 200 Query: 193 AQIVANQEGT-VLDKAISVGEKLIISTP-DLNAIMGESGGATLGAVKAVRNQNQA--GKI 248 +I+A+Q G K +V E L+ + ++NA+ + LGA++A++ I Sbjct: 201 MKIIASQSGDFTRTKGKTVMETLLSAHKGEINAVYAHNDDMALGAIQAIQAAGLKPGQDI 260 Query: 249 AVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDL 308 V D + + + L A V+ + G +F K++ + K VP + Sbjct: 261 LVISIDAVKPAFEAMMEGK-LNATVECNP-MHGPLLFDTIDKIVRGEK-VPKRTIVPGQI 317 Query: 309 YTKTEDG 315 + + + Sbjct: 318 FEREQAA 324 >UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG6_9FIRM Length = 331 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 113/300 (37%), Gaps = 18/300 (6%) Query: 23 FARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVD 81 A A G + + +Y +R G++ AK+ ++ + T+A+ D + + V Sbjct: 44 SADAGSGSHKCGFVVGSFEHVFYQTIRDGIESKAKELGMEAIV--TDAELDPNIATNKVQ 101 Query: 82 TLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLE 141 L A+ +AI LS G + A G+ + ++ + + ++ ++ D + Sbjct: 102 DLTAQGCEAIALSCNDAAGVKPAIENADAEGVAMFTFDCSTDSEA----INCFVGTDNYK 157 Query: 142 FGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEG 201 G+ G Y D + +I C+ R+ G +VLK + N Sbjct: 158 GGQLGGQELLKY----SEDGDTVGIICYPTASSCLDRQNGALDVLKDE-DRTVVYDNDYQ 212 Query: 202 TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 +KA + E ++ + PD+ A+ A GA+ A++ + G D E + Sbjct: 213 GDANKAQEIMENMLTANPDMAAVFCVGDPAATGALAAIKAAG--SDCKIIGFDGNPEAKE 270 Query: 262 ELEN----NQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQ 317 + + + + + + +G + Q K +++ I + + + + Sbjct: 271 AISDTEGNGKWWVSEIAQNPTLIGETIVEQMQKYLDEGKVDAAEIPIDPYVIDASNVADE 330 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 18/299 (6%) Query: 22 LFARAAEKEMTIGAIYLDTQG-YYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFV 80 + TIG + +Y G++ AA D ++ ++ NA G+ S++ V Sbjct: 19 AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVL--NANGNSSQQVNQV 76 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 LV + V A+I + + V A A IPVI + V+ ++ D + Sbjct: 77 QNLVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQGD-----VTTFIGSDSV 131 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQ 199 + DY + +A+I ++R KG +L+ P ++V+ Sbjct: 132 KAST----ELCDYLAKQMGGKGNLAIIKGVLGSSTEIERSKGCGSILEKN-PDIKVVSTT 186 Query: 200 EGTVLD-KAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 + KA +V + ++ + P+L AI ++ G LGA KA ++ + + D + Sbjct: 187 NADWDENKAYNVAQDVLTANPELQAIFAQNDGMALGAAKAAAQAGRSN-LKIVSVDGFPQ 245 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQA-DGEKVIQVPIDLYTKTEDGK 316 + +E+ QVL A + +MG +K ++ +A +K P L TK + Sbjct: 246 VYDAIESGQVL-ATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKENLEE 303 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 108/299 (36%), Gaps = 26/299 (8%) Query: 24 ARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTL 83 K TIG + ++ A V+L A ++ +D+L Sbjct: 18 CSQGGKRYTIGVSQCSEDIWREKQNAELRMGA-YFHDNVELKFAAAYDSDERQVQQIDSL 76 Query: 84 VARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 + +D +I++ N S + RA + GIPVI + + +A++ D E G Sbjct: 77 MNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGSQK----YTAFISADNYEMG 132 Query: 144 KKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 +G Y ++ + + I ++R GF + +K PG ++V + +G Sbjct: 133 HVMGE----YIVSRLHGKGNVLEIKGLAGSSPAIERHNGFMDAIKDE-PGIKVVGSLQGD 187 Query: 203 VLD-KAISVGEKLIISTP--DLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTT-- 257 + A ++ + + ++ + G + +GA +A+ K G D Sbjct: 188 WTEATACQKSKEWLAANEGVPVDLVFGANDRTAMGAREALGE-----KPLYCGIDGLPGK 242 Query: 258 -EIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 Q + + +L A G+ + ++++ Q EK + L T Sbjct: 243 NGGIQLVRD-SLLDASFIYPTH--GDQLMDLAIRILEGQ-PYEKETMLMSALVTHDNAK 297 >UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactobacillus RepID=C0XA52_9LACO Length = 320 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 57/294 (19%), Positives = 116/294 (39%), Gaps = 16/294 (5%) Query: 27 AEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVA 85 + + G+ Y+ +Y + + + + D + L N + ++ + ++ + Sbjct: 30 GHRPIKFGSTYMTMNNDFYQTLNEPIANEIDDHND--ILYSRNPELSVNNQVNEINNFIK 87 Query: 86 RNVDAIILSAVS--ENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFG 143 V I ++ V R +++A EAGI +I ++ + YV + + + G Sbjct: 88 NEVKVIFINPVDGTSTKLIRALKKAHEAGIKIIVVDSQLENSS--NYVDCTIRSNNYQAG 145 Query: 144 KKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVAN-QEGT 202 +K I ++ V R KGFE+ +K+ IV Sbjct: 146 VLCAKELM-----SKQKSANILILQQPTAISVVDRIKGFEDTIKNN-KNFHIVDKINTTG 199 Query: 203 VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQE 262 + + +K + + + IM + +GA+ A+ N++ KIA++ D + I + Sbjct: 200 QSENSYPKVQKYLKQGKNFDTIMSLNDKTAVGALAAINANNKSSKIAIYSIDGSENIKKM 259 Query: 263 LE-NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDG 315 L N +KA V S ++G ++IN Q +K I +P+ L T Sbjct: 260 LSTQNANVKATVAQSPLQIGKVAIKVAYELINHQK-VKKEIILPVKLITSKNIK 312 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 117/314 (37%), Gaps = 18/314 (5%) Query: 10 NLLLMATLLGSALFARAAEKEMTIGAIYLDT-QGYYAGVRQGVQDAAKDSSVQVQLIETN 68 L +A + A K IG + LD A + ++ A + V++ + T+ Sbjct: 19 LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNI--TD 76 Query: 69 AQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVD 128 ++ D+ E V+ L+ R VDA+I+ + + S +R A IP+ +T +G D Sbjct: 77 SKKDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEF-AEGSD 135 Query: 129 KYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLK 187 +Y+ D G+ A+Y + + +R+ GF++ + Sbjct: 136 VGYKSYIGVDDTVAGQMQ----AEYLNKLMPNGGNLVFAAGVYGASWTDRRKNGFDKTIN 191 Query: 188 SRVPGAQIVAN-QEGTVLDKAISVGEKLIISTP--DLNAIMGESGGATLGAVKAVRNQNQ 244 +IVA Q D A E + P ++A++ + +GA A+ + + Sbjct: 192 ENF---KIVAEFQAKGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAGR 248 Query: 245 AGKIA-VFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ 303 + V G D T Q++E + A V G +N + Sbjct: 249 TAEFKAVVGVDGTEPALQDIEGGT-MSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYT- 306 Query: 304 VPIDLYTKTEDGKQ 317 +P L TK + Sbjct: 307 LPFTLITKDNLSEF 320 >UniRef50_C9A2C8 Periplasmic ribose-binding protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C8_ENTGA Length = 352 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 140/337 (41%), Gaps = 20/337 (5%) Query: 1 MPTKMRTTRNLLLMATLLGSALF-----ARAAEKEMTIGAIYL-DTQGYYAGVRQGVQDA 54 M K + +LM +L ++ A +++ + T+ I + DT Y+ +++G +DA Sbjct: 1 MFKKSKIVLTGILMTMVLLASGCSNGSSAASSDNDKTLYFIPIVDTGAYWNPMKKGAEDA 60 Query: 55 AKDSSVQVQLIETNAQ--GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAG 112 AK+ + + + K F+ A+NV I ++ + + ++ A + Sbjct: 61 AKELGYTLVTKTSPSAEPSKKEKHIGFIKEATAKNVAGIAIAPIEKKAFVDPIKAAMDKD 120 Query: 113 IPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCE-A 171 IPVI ++ + +AY+ D + GK+LG AA+ I IA++ + A Sbjct: 121 IPVITFDADLENPD---DRTAYVGTDNVSAGKELGKRAAEEMKEKGITGGSIAIVCVDVA 177 Query: 172 FEVCVQRRKGFEEVLKSRV----PGAQIVAN-QEGTVLDKAISVGEKLIISTPDLNAIMG 226 + R KG +E + + +A Q+ ++ E I + DL + Sbjct: 178 QPTMIDREKGLKEGFEEVYGTDAKNFKFLATIQDNDQPSESKKQLEGYISANKDLVTVFS 237 Query: 227 ESGGAT-LGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVF 285 +G + A+ +Q ++GKI +G D T + +E+ ++ A+VD ++G V Sbjct: 238 LGSEGPDVGVMSAIESQGKSGKILHYGFDYTDTWLKGIEDGRI-TAIVDQDAYQIGYQVI 296 Query: 286 AQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH 322 +K I+ + + I + + E Sbjct: 297 ENLVKAIDGEK-IDATIPIDVKYVPAAELKSYGEEKG 332 >UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FY95_ACICJ Length = 329 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 13/269 (4%) Query: 31 MTIGAIY-LDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVD 89 TI + + T +Y ++ G AK + + ++ + + L+A++ Sbjct: 36 KTIALVPGIATDPFYITMQHGAAAEAKKLGLHLIWQGGSS-FSPETQIPALQALLAKHPA 94 Query: 90 AIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNA 149 A++++ +E +R+ AGIPVI +T I+ + K + + + ++ G A Sbjct: 95 ALLVAPTNEKALINPIRQFIAAGIPVISVDTTISDTAILK---SRITSNNVQGGASAARA 151 Query: 150 AADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-LDKA 207 A + + +AVIN R+KGF +K G ++VA + KA Sbjct: 152 IAGFAH----GKGDVAVINVKPGISTTDARQKGFLAQMK-HYKGMKVVAIEYDDDSPTKA 206 Query: 208 ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ 267 + + L++ P L I + + G KAV + GK+ V G D + L+ Sbjct: 207 FTEAQLLLLKYPHLKGIFATNVFSGEGVGKAVVAAGKKGKVDVVGYDAEPGEVKLLKQG- 265 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVINKQA 296 V+ ++ + G ++ ++ Sbjct: 266 VISTLIVQRPAEEGRLGVKYAYDILTGKS 294 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 108/290 (37%), Gaps = 14/290 (4%) Query: 28 EKEMTIGAIYLD-TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVAR 86 + + TI + T ++ + +G + A KD + + + + I ++ V L+ Sbjct: 51 QDKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIEL 110 Query: 87 NVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK---GVDKYVSAYLVGDPLEFG 143 VDA++++ ++ A + GI VI + ++Q+ V ++ D Sbjct: 111 KVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDN---- 166 Query: 144 KKLGNAAADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT 202 + + ++A+I R+ G A +VA + Sbjct: 167 ELAAYKSTKVLTEKLTQPTEVAIIEGIRGALNAELRKNGAIRAFSE-SKFATLVATESAN 225 Query: 203 VL-DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQ 261 D+A + KL P++ AI + LG ++ +++ + + V D + Sbjct: 226 WKIDEAFELAAKLYNKNPNIGAIFCANDMMALGVIEYLQSTGK-DNVQVVAFDAIPQALN 284 Query: 262 ELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311 +++ VL A VD + G +++ + K I + + TK Sbjct: 285 AVQSG-VLLATVDQDAAEQGYQGILSANNILSGKKTPLK-ITIEAKIITK 332 >UniRef50_C0Z4C9 Putative ABC transporter substrate binding protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C9_BREBN Length = 328 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 115/311 (36%), Gaps = 17/311 (5%) Query: 9 RNLLLMATLLGSALFARA---AEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQL 64 L+ TL S + +K+ T+ I Y+ V+ G + AAK+ + Sbjct: 14 LVFLVAVTLFYSCSASLTDVVVDKKKTVALIVRMKHGDYWRTVKLGAEMAAKEYERNLNF 73 Query: 65 IETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQ 124 + + D ++ V +A + I+++ E ++ E IP++ +T N Sbjct: 74 YAPDYEEDAQRQMELVQQAIADGSETIVVAPSDERVLREAIKLTRERAIPILVLDTVGND 133 Query: 125 KGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF-EVCVQRRKGFE 183 V +Y+ D + G+K Y I + +I ++ + +R +G Sbjct: 134 SA----VKSYIGTDNYDMGRKAFEKMV-YLIEK---KGQIVLLGTDRIKANAKRREQGVL 185 Query: 184 EVLKSRVPGAQIVANQEGTVLDKAI-SVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQ 242 + L R ++VAN+ K I +LI P L ++ +G + + + Sbjct: 186 D-LLPREMQVELVANENAPSDKKQIGEWTRELIRKHPQLKGVIALDSSTAIGVAEELESS 244 Query: 243 NQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI 302 K+ + D E+ + L+ ++ A + MG ++ N +A ++ Sbjct: 245 GLRDKVKIVAIDSPPEVLEYLQEG-IISATIIQKPLSMGYLGVKYAVEASNGEA-VPSLV 302 Query: 303 QVPIDLYTKTE 313 + + Sbjct: 303 DTGTKVIDREN 313 >UniRef50_B0PGH9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGH9_9FIRM Length = 288 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 114/293 (38%), Gaps = 18/293 (6%) Query: 35 AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN-VDAIIL 93 + + ++ + G+Q A+ V + +A+ DI + + + D + + Sbjct: 2 VLKTLSNPFWVDMADGIQAEAEKLGVTADIFAVDAETDIDGQLKKCEDAINSGSYDGLGV 61 Query: 94 SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVD---KYVSAYLVGDPLEFGKKLGNAA 150 + ++ V A++ G+PV+ + I++ + YV + D K+G Sbjct: 62 APITATNLISAVVAANQKGMPVVNIDAKIDEDALKEAGGYVVGFATSDN----HKVGAIG 117 Query: 151 ADYFIANKIDQPKIAVINC-EAFEVCVQRRKGFEEVLKSRVPG-AQIVANQEGTV-LDKA 207 A Y + D K+A+I RR G +E L++ G Q+V Q KA Sbjct: 118 AQYIMEQLPDGGKVAIIEGRAGDLSGELRRDGCKETLEADGSGKYQVVDVQPADWDRQKA 177 Query: 208 ISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ 267 + V +I TPDLNA + LG ++A+ N GKI + G+D + E + ++ Sbjct: 178 LDVATNIITKTPDLNAFFVANDTMALGVMQAIANTGNTGKILLVGTDASDETKEAIKAGN 237 Query: 268 VLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVI-----QVPIDLYTKTEDG 315 ++ V +G + I G V +L TK Sbjct: 238 MVA--VCQDPAAIGATCLDILVDAIKAGETGSPDYEAVSKLVDANLVTKENVA 288 >UniRef50_C0C5Z0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Z0_9CLOT Length = 322 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 135/327 (41%), Gaps = 20/327 (6%) Query: 1 MPTKMRTTRNLLLMATLLGSALFARA----------AEKEMTIGAIYLD-TQGYYAGVRQ 49 MP K+ ++ ++ L + FA + K M IG D T + + Sbjct: 1 MPGKITRVCFVICLSCFLAACSFAGSLGEDTAHKEKTAKGMKIGVCMSDMTHTTFIEMLD 60 Query: 50 GVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRAS 109 + A V++ IE ++ D ++ +A DAII ++ S V A Sbjct: 61 QMHRKADKLGVEI--IEFSSDSDPGNMVEGLENFIAAGCDAIIFQNFDQDASEYVVSEAV 118 Query: 110 EAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 169 + GI VI Y+ + + V D + G +G+ A D+ N + +A+ + Sbjct: 119 KKGIIVISYDNYSDAA------TYVYVADNEKLGFAIGHMAGDWINENLGGRANVAICDY 172 Query: 170 EAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESG 229 R EE ++ R P ++IVA Q+ +LD+ ++ GE L+ + PD+N + G + Sbjct: 173 SLINFLNNRADYIEEGIRERAPESKIVARQDAGLLDQGVNFGEILLQAHPDVNVVAGVND 232 Query: 230 GATLGAVKAVRNQNQAG-KIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQT 288 LG +A + ++ G IA+FG D T E + + + V + V K+ G +F Sbjct: 233 NGVLGVKEAFESAHKTGPSIAMFGCDATEEGIKAIREDSVFRGTVYFDLKQAGEDMFMAA 292 Query: 289 LKVINKQADGEKVIQVPIDLYTKTEDG 315 + ++V+ + K Sbjct: 293 VNAYLGDPGEKRVVTFQMVPIMKDNLD 319 >UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZX1_DESAD Length = 312 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 126/298 (42%), Gaps = 14/298 (4%) Query: 22 LFARAAEKEMTIGAIYLDTQ-GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFV 80 F A+ + TI I T ++ V G A +DS + + + S + + Sbjct: 3 CFPCASYAQKTIVTIPKATIFNFWRIVCMGAHAAVEDSDITLIWRGPRVENKPSAQRHLL 62 Query: 81 DTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPL 140 + + + VDAI+L+ + + + +AS+AGI ++ ++ + +D ++ D Sbjct: 63 EYYIDQKVDAIVLAPMDRKTLNPYIEKASKAGIKIVIIDSPVTTDSIDG----FIATDNY 118 Query: 141 EFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQ- 199 + G A P + V + C R KGF + +++ PG I+ Sbjct: 119 KAGAMGAELMASKLK---GTGPVLVVGHSPDNGSCALREKGFIDKMQALSPGRTIITIHM 175 Query: 200 -EGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTE 258 +G+ + +S ++++ +TP + + + + G + ++++N+ I D + Sbjct: 176 LDGSERETRLS-TKEILTNTPSIAGVFTTNEATSDGVLHVMQDRNET-HIPFIAFDYNQK 233 Query: 259 IAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGK 316 + + + N + ++A++ +G ++++N + K ++ P+ + T + Sbjct: 234 LLEGVRN-KQIEALITQRPYALGFFGVRSAIELLNGKK-ISKHMESPVTIITNDNIDE 289 >UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7 Tax=Burkholderia RepID=B2SY92_BURPP Length = 317 Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 59/317 (18%), Positives = 120/317 (37%), Gaps = 18/317 (5%) Query: 2 PTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAI-YLDTQGYYAGVRQGVQDAAKDSSV 60 T R+T L +A L A + IG Y+ +++ + DAA Sbjct: 12 KTFARSTAALATLAFGLSFIAAPAAQAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGA 71 Query: 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120 V + T+A D+SK+ + V+ ++ + +D ++++ G V A +A Sbjct: 72 TVVV--TDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKKA-----GVVV 124 Query: 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180 + V +++ + G A +Y + ++A+++ ++R + Sbjct: 125 VAVDANANGPVDSFVGSKNYDAG----EMACEYLAKSIGGSGEVAILDGIPVVPILERVR 180 Query: 181 GFEEVLKSRVPGAQIVANQEGTV-LDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAV 239 G + L + PG ++V Q G A+SV E +I + P+L + + G ++GA+ A+ Sbjct: 181 GCKAALA-KAPGVKLVDTQNGKQERATALSVTENMIQAHPNLKGVFSVNDGGSMGALSAI 239 Query: 240 RNQNQAGKIAVFGSDMTTEIAQELEN-NQVLKAVVDISGKKMGNAVFAQTLKVINKQADG 298 + + I + D E ++ N L A+ Sbjct: 240 ESSGK--DIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIALAK-KWGANV 296 Query: 299 EKVIQVPIDLYTKTEDG 315 K I V + + K+ Sbjct: 297 PKTIPVDVKMIDKSNAK 313 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.170 0.472 Lambda K H 0.267 0.0520 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,892,094,368 Number of Sequences: 3077464 Number of extensions: 86085074 Number of successful extensions: 367655 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2789 Number of HSP's successfully gapped in prelim test: 6085 Number of HSP's that attempted gapping in prelim test: 348130 Number of HSP's gapped (non-prelim): 9933 length of query: 327 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 198 effective length of database: 643,403,500 effective search space: 127393893000 effective search space used: 127393893000 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 94 (40.5 bits)