263 c1pjaA_ Probab=98.09   E-value=9e-05  Score=61.05  Aligned_columns=206  Identities=12%

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHC--CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             50899932888722447789889899978--9199997488888667889997785618540347999999999889988
Q batch____       445 NPLLVYGYGSYGASIDADFSFSRLSLLDR--GFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGS  522 (686)
Q Consensus       445 ~P~il~~yGGp~~~~~~~f~~~~~~l~~~--G~~v~~~n~RGs~g~G~~w~~a~~~~~~~~~~~D~ia~~~~Li~~g~~d  522 (686)
                      +|-||.+||.++++.  .|......|.+.  ||-|+.++.||.|.         ........++++++.+..+.....  
T Consensus         2 ~~PvvllHG~~~~~~--~w~~~~~~l~~~~~~~~v~~~D~~G~G~---------S~~~~~~~~~~~~~~~~~~~~~~~--   68 (268)
T c1pjaA_           2 YKPVIVVHGLFDSSY--SFRHLLEYINETHPGTVVTVLDLFDGRE---------SLRPLWEQVQGFREAVVPIMAKAP--   68 (268)
T ss_dssp             CCCEEEECCTTCCGG--GGHHHHHHHHHHSTTCCEEECCSSCSGG---------GGSCHHHHHHHHHHHHHHHHHHCT--
T ss_pred             CCCEEEECCCCCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCCC---------CCCCHHCCHHHHHHHHHHHHCCCC--
T ss_conf             877899987999888--8999999999718982999816888999---------999801059999998753200036--


Q ss_pred             HHHEEEEEECHHHHHHHHHHHCCCCCEEEEEEECCCCCH--------------------HHHCCCCCCCCCHHHHHHCCC
Q ss_conf             865999842889999999987297514799970783203--------------------554038663445567888088
Q batch____       523 PSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDV--------------------VTTMLDESIPLTTGEFEEWGN  582 (686)
Q Consensus       523 ~~ri~i~G~S~GG~l~~~~~~~~pdlf~a~v~~~pv~D~--------------------~~~~~~~~~~~~~~~~~e~G~  582 (686)
                       .++.+.|+|.||+++...+.++|++-.+.|...+....                    ..................+-+
T Consensus        69 -~~~~lvGhS~GG~ia~~~a~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (268)
T c1pjaA_          69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHD  147 (268)
T ss_dssp             -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTGGGGBCC
T ss_pred             -CCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -8717996090599999999987884353599943876675444034431000358888643200134542227787410


Q ss_pred             CCCHHHHHHHHHHCHH-------------------------------HHHHCCCCCCEEEEEECCCCCCCHHHHHHH---
Q ss_conf             8899999988870958-------------------------------777307998069985178985886899999---
Q batch____       583 PQDPQYYEYMKSYSPY-------------------------------DNVTAQAYPHLLVTTGLHDSQVQYWEPAKW---  628 (686)
Q Consensus       583 p~~~~~~~~~~~~SP~-------------------------------~~v~~~~~P~~Li~~g~~D~rV~~~~~~k~---  628 (686)
                      +...+.+.......+.                               ..+.....| .++.++..|.-++..+...+   
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  226 (268)
T c1pjaA_         148 PHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSS-FFGFYDANETVLEMEEQLVYLRD  226 (268)
T ss_dssp             TTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCSEEEEEECTTCSSSSSGGGG-GTCEECTTCCEECGGGSHHHHTT
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC-HHHCCCCCCEEECHHHHHHHHHH
T ss_conf             10056776422227887543542212235776762364021003667510323150-32202677605256571454665


Q ss_pred             ---HHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             ---99999859997049999807888877789899999999999
Q batch____       629 ---VAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEY  669 (686)
Q Consensus       629 ---~~~L~~~~~~~~~v~l~~~~~~GHg~~~~~~~~~~~~a~~~  669 (686)
                         ...|...+.    +.+.+-++.||..--...+.+.+.-..|
T Consensus       227 ~~~~~~l~~~~~----~~~~~v~g~gH~~~~~~p~~~~~~i~~f  266 (268)
T c1pjaA_         227 SFGLKTLLARGA----IVRCPMAGISHTAWHSNRTLYETCIEPW  266 (268)
T ss_dssp             TTSHHHHHHTTC----EEEEECSSCCTTTTTSCHHHHHHHTGGG
T ss_pred             HHHHHHHHHCCC----EEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             898999951498----0999977488470023589999997764