BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (238 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76484 Uncharacterized protein yfbN n=6 Tax=Escherichia... 488 e-137 UniRef50_Q4K3J5 Putative uncharacterized protein n=1 Tax=Pseudom... 129 1e-28 UniRef50_C7PFM9 Putative uncharacterized protein n=1 Tax=Chitino... 110 5e-23 UniRef50_C2M473 Putative uncharacterized protein n=2 Tax=Capnocy... 54 4e-06 >UniRef50_P76484 Uncharacterized protein yfbN n=6 Tax=Escherichia RepID=YFBN_ECOLI Length = 238 Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/238 (100%), Positives = 238/238 (100%) Query: 1 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN 60 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN Sbjct: 1 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN 60 Query: 61 VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA 120 VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA Sbjct: 61 VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA 120 Query: 121 DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR 180 DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR Sbjct: 121 DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR 180 Query: 181 YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL 238 YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL Sbjct: 181 YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL 238 >UniRef50_Q4K3J5 Putative uncharacterized protein n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4K3J5_PSEF5 Length = 258 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 7 IRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAENVLLATN 66 +++LRK +P+G++ A+ LL R + +A +L+ + + +L K+ + + A L A Sbjct: 26 LQQLRKLIPIGLRHAQALLARCANNPQQAAELYKAELLQVLVDKSGLPAEHAREQLHAAG 85 Query: 67 YDIAEALRRIDEQRYTLTELILRKN-KDAGDALNNIALAIEYEWDLKRKFWFGFADIQLL 125 YD+ AL I+E R+TLT+ ILRK+ +D G AL+ IA AIE + R++W F ++ L Sbjct: 86 YDLNRALHAIEEARFTLTQRILRKHHRDKGQALDLIAQAIETAEQVPRQYWLDFQRLEAL 145 Query: 126 PPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIRYDELK 185 P L+ FM+++EW Y GWEG + + F Q + L L LA + A R +L+ Sbjct: 146 APALRCFMVLHEWLAYEGWEGFDSALHFHLSQAIAQFRLLHLDALADTLEQADQRQQQLR 205 Query: 186 D---KAENF----HEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPC 231 D ++EN I +D F H +Q ++D L Q+V+ +++ FP Sbjct: 206 DALAESENSIDLAMRINQDPFFNRCQDHFNQQRPQLDERLYQWVEQHLEQFPA 258 >UniRef50_C7PFM9 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PFM9_CHIPD Length = 243 Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 19/236 (8%) Query: 10 LRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAENVLLATNYDI 69 LR+ +PVG+ +LLE GGD+++A LF D + L K + + L++ N+DI Sbjct: 12 LRQRIPVGLSSGLKLLENAGGDINKAELLFREDILQTLVRKIGLPEDVIQRHLISNNFDI 71 Query: 70 AEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFADIQLLPPVL 129 ++RIDE+R+TLTE ILR+ K +A++ + A+ + D+ + W F + P + Sbjct: 72 DATVKRIDEERFTLTERILRRYKHKAEAVDQVRFAVLGQNDVYKGSWLDFKQLTAFPKEV 131 Query: 130 QTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQA-LGLLELA------QKMVTARIRYD 182 + + EW Y +EG++ + FE + QL+ LGL LA Q++ + Sbjct: 132 YCLLTLNEWLLYADYEGLDVALSFELEVITNQLETVLGLSALADALRQTQELADLLYKKY 191 Query: 183 ELKDKAENF----HEITEDDIFKMLIIHCDQLAREVDSILLQ----FVKDNIDVFP 230 E+ EN+ E+ E DI++ C+Q+ +E +L++ V N+ +FP Sbjct: 192 EITGNHENYIKAARELDESDIYR----QCEQMYKEQRDLLIERLYDLVTANVHLFP 243 >UniRef50_C2M473 Putative uncharacterized protein n=2 Tax=Capnocytophaga RepID=C2M473_CAPGI Length = 205 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%) Query: 1 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN 60 M +L EI+ L+ + + +Q A+ LLE+T GD+ AI +H + I + A+ + EAE+ Sbjct: 1 MNYLKEIQILKTELALPLQKAKTLLEQTAGDIPAAIAFYHQENITSIMAETECERWEAES 60 Query: 61 VLLATNYDIAEALRRIDEQRYTLT 84 V NY++ +A++ I T++ Sbjct: 61 VYERFNYNVEKAVKHIYSTSLTIS 84 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76484 Uncharacterized protein yfbN n=6 Tax=Escherichia... 327 2e-88 UniRef50_Q4K3J5 Putative uncharacterized protein n=1 Tax=Pseudom... 267 2e-70 UniRef50_C7PFM9 Putative uncharacterized protein n=1 Tax=Chitino... 251 2e-65 UniRef50_C2M473 Putative uncharacterized protein n=2 Tax=Capnocy... 113 6e-24 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P76484 Uncharacterized protein yfbN n=6 Tax=Escherichia RepID=YFBN_ECOLI Length = 238 Score = 327 bits (838), Expect = 2e-88, Method: Composition-based stats. Identities = 238/238 (100%), Positives = 238/238 (100%) Query: 1 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN 60 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN Sbjct: 1 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN 60 Query: 61 VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA 120 VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA Sbjct: 61 VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA 120 Query: 121 DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR 180 DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR Sbjct: 121 DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR 180 Query: 181 YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL 238 YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL Sbjct: 181 YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL 238 >UniRef50_Q4K3J5 Putative uncharacterized protein n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4K3J5_PSEF5 Length = 258 Score = 267 bits (683), Expect = 2e-70, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 7 IRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAENVLLATN 66 +++LRK +P+G++ A+ LL R + +A +L+ + + +L K+ + + A L A Sbjct: 26 LQQLRKLIPIGLRHAQALLARCANNPQQAAELYKAELLQVLVDKSGLPAEHAREQLHAAG 85 Query: 67 YDIAEALRRIDEQRYTLTELILRKN-KDAGDALNNIALAIEYEWDLKRKFWFGFADIQLL 125 YD+ AL I+E R+TLT+ ILRK+ +D G AL+ IA AIE + R++W F ++ L Sbjct: 86 YDLNRALHAIEEARFTLTQRILRKHHRDKGQALDLIAQAIETAEQVPRQYWLDFQRLEAL 145 Query: 126 PPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIRYDELK 185 P L+ FM+++EW Y GWEG + + F Q + L L LA + A R +L+ Sbjct: 146 APALRCFMVLHEWLAYEGWEGFDSALHFHLSQAIAQFRLLHLDALADTLEQADQRQQQLR 205 Query: 186 D---KAENF----HEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPC 231 D ++EN I +D F H +Q ++D L Q+V+ +++ FP Sbjct: 206 DALAESENSIDLAMRINQDPFFNRCQDHFNQQRPQLDERLYQWVEQHLEQFPA 258 >UniRef50_C7PFM9 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PFM9_CHIPD Length = 243 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 19/241 (7%) Query: 5 SEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAENVLLA 64 ++ LR+ +PVG+ +LLE GGD+++A LF D + L K + + L++ Sbjct: 7 QQLSLLRQRIPVGLSSGLKLLENAGGDINKAELLFREDILQTLVRKIGLPEDVIQRHLIS 66 Query: 65 TNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFADIQL 124 N+DI ++RIDE+R+TLTE ILR+ K +A++ + A+ + D+ + W F + Sbjct: 67 NNFDIDATVKRIDEERFTLTERILRRYKHKAEAVDQVRFAVLGQNDVYKGSWLDFKQLTA 126 Query: 125 LPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQA-LGLLELA------QKMVTA 177 P + + + EW Y +EG++ + FE + QL+ LGL LA Q++ Sbjct: 127 FPKEVYCLLTLNEWLLYADYEGLDVALSFELEVITNQLETVLGLSALADALRQTQELADL 186 Query: 178 RIRYDELKDKAENF----HEITEDDIFKMLIIHCDQLAREVDSILLQ----FVKDNIDVF 229 + E+ EN+ E+ E DI++ C+Q+ +E +L++ V N+ +F Sbjct: 187 LYKKYEITGNHENYIKAARELDESDIYR----QCEQMYKEQRDLLIERLYDLVTANVHLF 242 Query: 230 P 230 P Sbjct: 243 P 243 >UniRef50_C2M473 Putative uncharacterized protein n=2 Tax=Capnocytophaga RepID=C2M473_CAPGI Length = 205 Score = 113 bits (282), Expect = 6e-24, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 49/84 (58%) Query: 1 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN 60 M +L EI+ L+ + + +Q A+ LLE+T GD+ AI +H + I + A+ + EAE+ Sbjct: 1 MNYLKEIQILKTELALPLQKAKTLLEQTAGDIPAAIAFYHQENITSIMAETECERWEAES 60 Query: 61 VLLATNYDIAEALRRIDEQRYTLT 84 V NY++ +A++ I T++ Sbjct: 61 VYERFNYNVEKAVKHIYSTSLTIS 84 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.317 0.135 0.348 Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 809,937,898 Number of Sequences: 3077464 Number of extensions: 27976124 Number of successful extensions: 97941 Number of sequences better than 1.0e-01: 7 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 97920 Number of HSP's gapped (non-prelim): 17 length of query: 238 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 113 effective length of database: 655,713,356 effective search space: 74095609228 effective search space used: 74095609228 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.6 bits)