Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	W	L	S	E	I	R	K	L	R	K	N	V	P	V	G	I	Q	V	A	R	R	L	L	E	R	T	G	G	D	V	D	E	A	I	K	L	F	H	I	D	Q	I	N	I	L	T	A	K	A	D	V	T	H	Q	E	A	E	N
Secondary structure
SS confidence
Disorder		?	?												?	?	?	?											?																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	L	A	T	N	Y	D	I	A	E	A	L	R	R	I	D	E	Q	R	Y	T	L	T	E	L	I	L	R	K	N	K	D	A	G	D	A	L	N	N	I	A	L	A	I	E	Y	E	W	D	L	K	R	K	F	W	F	G	F	A
Secondary structure
SS confidence
Disorder																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	I	Q	L	L	P	P	V	L	Q	T	F	M	L	V	Y	E	W	H	E	Y	V	G	W	E	G	M	E	C	G	I	F	F	E	S	D	H	T	H	Q	Q	L	Q	A	L	G	L	L	E	L	A	Q	K	M	V	T	A	R	I	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence		Y	D	E	L	K	D	K	A	E	N	F	H	E	I	T	E	D	D	I	F	K	M	L	I	I	H	C	D	Q	L	A	R	E	V	D	S	I	L	L	Q	F	V	K	D	N	I	D	V	F	P	C	R	H	N	R	H	E	L
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?																																							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1efu chain B domain 3 Region: 5 - 52 Aligned: 48 Modelled: 48 Confidence: 95.2% Identity: 23% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1xb2 chain B domain 1 Region: 5 - 52 Aligned: 48 Modelled: 48 Confidence: 93.8% Identity: 25% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1aip chain C domain 1 Region: 4 - 52 Aligned: 49 Modelled: 49 Confidence: 93.7% Identity: 31% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1v92 chain A Region: 40 - 73 Aligned: 34 Modelled: 34 Confidence: 92.2% Identity: 21% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TAP-C domain-like Phyre2 PDB 1efu chain B Region: 5 - 52 Aligned: 48 Modelled: 48 Confidence: 91.6% Identity: 23% PDB header:complex (two elongation factors) Chain: B: PDB Molecule:elongation factor ts; PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli Phyre2 PDB 1aip chain G Region: 4 - 52 Aligned: 49 Modelled: 49 Confidence: 91.4% Identity: 31% PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus Phyre2 PDB 2cp9 chain A domain 1 Region: 5 - 51 Aligned: 47 Modelled: 47 Confidence: 90.6% Identity: 26% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1wj7 chain A domain 1 Region: 18 - 79 Aligned: 54 Modelled: 62 Confidence: 90.5% Identity: 20% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1xb2 chain B Region: 5 - 52 Aligned: 48 Modelled: 48 Confidence: 87.8% Identity: 21% PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex Phyre2 PDB 3mmp chain C Region: 5 - 52 Aligned: 48 Modelled: 48 Confidence: 87.8% Identity: 23% PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins Phyre2 PDB 2dah chain A domain 1 Region: 2 - 38 Aligned: 37 Modelled: 37 Confidence: 86.5% Identity: 27% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2dah chain A Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 86.4% Identity: 28% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 Phyre2 PDB 1vej chain A domain 1 Region: 2 - 38 Aligned: 37 Modelled: 37 Confidence: 86.1% Identity: 22% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1wr1 chain B Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 85.9% Identity: 22% PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin Phyre2 PDB 2bwb chain A domain 1 Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 85.4% Identity: 22% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2dna chain A Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 85.3% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna Phyre2 PDB 1tr8 chain A Region: 41 - 73 Aligned: 33 Modelled: 33 Confidence: 85.3% Identity: 27% PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) Phyre2 PDB 1ufz chain A Region: 32 - 79 Aligned: 47 Modelled: 48 Confidence: 85.2% Identity: 23% Fold: RuvA C-terminal domain-like Superfamily: HBS1-like domain Family: HBS1-like domain Phyre2 PDB 2cwb chain A Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 85.2% Identity: 31% PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin Phyre2 PDB 2dna chain A domain 1 Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 84.8% Identity: 25% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2jz1 chain A Region: 62 - 85 Aligned: 24 Modelled: 24 Confidence: 57.4% Identity: 42% PDB header:transcription Chain: A: PDB Molecule:protein doublesex; PDBTitle: dsx_long Phyre2 1 d1efub3 2 d1xb2b1 3 d1aipc1 4 d1v92a_ 5 c1efuB_ 6 c1aipG_ 7 d2cp9a1 8 d1wj7a1 9 c1xb2B_ 10 c3mmpC_ 11 d2daha1 12 c2dahA_ 13 d1veja1 14 c1wr1B_ 15 d2bwba1 16 c2dnaA_ 17 c1tr8A_ 18 d1ufza_ 19 c2cwbA_ 20 d2dnaa1 21 22 23 24 25 26 27 28 29 30 31 c2jz1A_ 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1efub3 95.2 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 2 d1xb2b1 93.8 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 3 d1aipc1 93.7 31 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 4 d1v92a_ 92.2 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 5 c1efuB_ 91.6 23 PDB header:complex (two elongation factors) Chain: B: PDB Molecule:elongation factor ts; PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli 6 c1aipG_ 91.4 31 PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus 7 d2cp9a1 90.6 26 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 8 d1wj7a1 90.5 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 9 c1xb2B_ 87.8 21 PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex 10 c3mmpC_ 87.8 23 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 11 d2daha1 86.5 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 12 c2dahA_ 86.4 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 13 d1veja1 86.1 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 14 c1wr1B_ 85.9 22 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 15 d2bwba1 85.4 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 16 c2dnaA_ 85.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 17 c1tr8A_ 85.3 27 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 18 d1ufza_ 85.2 23 Fold:RuvA C-terminal domain-like Superfamily:HBS1-like domain Family:HBS1-like domain 19 c2cwbA_ 85.2 31 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 20 d2dnaa1 84.8 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 21 c2jy5A_ not modelled 84.4 22 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 22 d1ifya_ not modelled 84.0 9 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 23 d1wiva_ not modelled 80.2 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 24 d1oaia_ not modelled 77.4 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 25 d1oqya1 not modelled 77.3 9 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 26 c2jp7A_ not modelled 67.9 10 PDB header:translation Chain: A: PDB Molecule:mrna export factor mex67; PDBTitle: nmr structure of the mex67 uba domain 27 d1go5a_ not modelled 65.4 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 28 c3bq3A_ not modelled 65.2 19 PDB header:cell cycle, ligase Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: crystal structure of s. cerevisiae dcn1 29 c2dakA_ not modelled 62.5 23 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 30 d1vega_ not modelled 59.5 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 31 c2jz1A_ 57.4 42 PDB header:transcription Chain: A: PDB Molecule:protein doublesex; PDBTitle: dsx_long 32 c3agqA_ not modelled 53.3 22 PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii 33 d1wgla_ not modelled 51.4 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 34 c1umqA_ not modelled 41.4 20 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 35 d1umqa_ not modelled 41.4 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 36 c2dalA_ not modelled 37.1 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein kiaa0794; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein 37 d2g3qa1 not modelled 32.1 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 38 c2l2dA_ not modelled 30.3 19 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 7a; PDBTitle: solution nmr structure of human uba-like domain of otud7a_11_83, nesg2 target ht6304a/ocsp target otud7a_11_83/sgc-toronto 39 c2dhyA_ not modelled 29.8 16 PDB header:immune system Chain: A: PDB Molecule:cue domain-containing protein 1; PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1) 40 c3qsvD_ not modelled 28.0 22 PDB header:transcription/dna Chain: D: PDB Molecule:mothers against decapentaplegic homolog 4; PDBTitle: structural basis for dna recognition by constitutive smad4 mh1 dimers 41 d1b8za_ not modelled 28.0 23 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 42 d2dkla1 not modelled 23.5 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 43 d1mula_ not modelled 22.1 26 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 44 c2dagA_ not modelled 21.2 11 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 45 c2daiA_ not modelled 20.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 46 c2l3gA_ not modelled 20.3 21 PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 7; PDBTitle: solution nmr structure of ch domain of rho guanine nucleotide exchange2 factor 7 from homo sapiens, northeast structural genomics consortium3 target hr4495e 47 c2damA_ not modelled 20.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:etea protein; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human etea protein 48 c2cfhD_ not modelled 20.2 15 PDB header:transport Chain: D: PDB Molecule:trafficking protein particle complex subunit 6b; PDBTitle: structure of the bet3-tpc6b core of trapp 49 c2dzlA_ not modelled 18.2 26 PDB header:structural genomics unknown function Chain: A: PDB Molecule:protein fam100b; PDBTitle: solution structure of the uba domain in human protein2 fam100b 50 d1fipa_ not modelled 17.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 51 c2iifA_ not modelled 17.2 17 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 52 d1oiza1 not modelled 15.2 16 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 53 c2f46A_ not modelled 13.7 18 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative phosphatase (nma1982) from neisseria2 meningitidis z2491 at 1.41 a resolution 54 c1auaA_ not modelled 12.5 15 PDB header:phospholipid-binding protein Chain: A: PDB Molecule:phosphatidylinositol transfer protein sec14p; PDBTitle: phosphatidylinositol transfer protein sec14p from2 saccharomyces cerevisiae 55 c1xopA_ not modelled 12.4 100 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: nmr structure of g1v mutant of influenza hemagglutinin2 fusion peptide in dpc micelles at ph 5 56 d2p06a1 not modelled 12.4 28 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:AF0060-like 57 c2p06A_ not modelled 12.4 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af_0060; PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304 58 c1xooA_ not modelled 12.4 100 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: nmr structure of g1s mutant of influenza hemagglutinin2 fusion peptide in dpc micelles at ph 5 59 c3g8qA_ not modelled 12.4 32 PDB header:rna binding protein Chain: A: PDB Molecule:predicted rna-binding protein, contains thump PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea 60 c1oizA_ not modelled 11.6 15 PDB header:transport Chain: A: PDB Molecule:alpha-tocopherol transfer protein; PDBTitle: the molecular basis of vitamin e retention: structure of2 human alpha-tocopherol transfer protein 61 c2jrdA_ not modelled 11.4 100 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: influenza hemagglutinin fusion domain mutant f9a 62 c3c4iA_ not modelled 10.8 20 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 63 c2qhoF_ not modelled 10.5 23 PDB header:protein binding/ligase Chain: F: PDB Molecule:e3 ubiquitin-protein ligase edd1; PDBTitle: crystal structure of the uba domain from edd ubiquitin2 ligase in complex with ubiquitin 64 d1p71a_ not modelled 10.4 31 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 65 d1etxa_ not modelled 10.4 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 66 d2o97b1 not modelled 10.2 26 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 67 c1ibnA_ not modelled 9.7 100 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin ha2 chain peptide; PDBTitle: nmr structure of hemagglutinin fusion peptide in dpc2 micelles at ph 5 68 c1iboA_ not modelled 9.7 100 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin ha2 chain peptide; PDBTitle: nmr structure of hemagglutinin fusion peptide in dpc2 micelles at ph 7.4 69 d1veka_ not modelled 9.7 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 70 c3qheB_ not modelled 9.6 40 PDB header:signaling protein/splicing Chain: B: PDB Molecule:kh domain-containing, rna-binding, signal transduction- PDBTitle: crystal structure of the complex between the armadillo repeat domain2 of adenomatous polyposis coli and the tyrosine-rich domain of sam68 71 d1exea_ not modelled 9.5 14 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 72 d1huua_ not modelled 9.4 26 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 73 c2kq9A_ not modelled 9.3 36 PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888 74 c3e21A_ not modelled 9.2 19 PDB header:apoptosis Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: crystal structure of faf-1 uba domain 75 c3ltiA_ not modelled 9.2 38 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 76 c3b7qA_ not modelled 9.1 20 PDB header:signaling protein Chain: A: PDB Molecule:uncharacterized protein ykl091c; PDBTitle: crystal structure of yeast sec14 homolog sfh1 in complex with2 phosphatidylcholine 77 d1oqya2 not modelled 9.0 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 78 d2crna1 not modelled 8.8 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 79 c2rd9C_ not modelled 8.6 22 PDB header:hydrolase Chain: C: PDB Molecule:bh0186 protein; PDBTitle: crystal structure of a putative yfit-like metal-dependent hydrolase2 (bh0186) from bacillus halodurans c-125 at 2.30 a resolution 80 c3e7lD_ not modelled 8.6 21 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 81 c1z9eA_ not modelled 8.3 25 PDB header:protein binding/transcription Chain: A: PDB Molecule:pc4 and sfrs1 interacting protein 2; PDBTitle: solution structure of the hiv-1 integrase-binding domain in2 ledgf/p75 82 d1ntca_ not modelled 8.2 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 83 d2k0bx1 not modelled 8.0 32 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 84 c3iz6M_ not modelled 7.9 15 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 85 d2b4jc1 not modelled 7.8 25 Fold:N-cbl like Superfamily:HIV integrase-binding domain Family:HIV integrase-binding domain 86 c3db3A_ not modelled 7.8 43 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide 87 c2zkqm_ not modelled 7.7 15 PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 88 d1olma1 not modelled 7.5 17 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 89 d1hlva2 not modelled 7.4 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 90 c1o5zA_ not modelled 7.3 30 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase; PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution 91 c2lahA_ not modelled 7.1 30 PDB header:cell cycle, apoptosis Chain: A: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1; PDBTitle: solution nmr structure of mitotic checkpoint serine/threonine-protein2 kinase bub1 n-terminal domain from homo sapiens, northeast structural3 genomics consortium target hr5460a (methods development) 92 d1tjla1 not modelled 6.8 20 Fold:Long alpha-hairpin Superfamily:DnaK suppressor protein DksA, alpha-hairpin domain Family:DnaK suppressor protein DksA, alpha-hairpin domain 93 c3hy5A_ not modelled 6.7 11 PDB header:transport protein Chain: A: PDB Molecule:retinaldehyde-binding protein 1; PDBTitle: crystal structure of cralbp 94 d1whca_ not modelled 6.6 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 95 d1iyca_ not modelled 6.4 40 Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin 96 c2jvwA_ not modelled 6.3 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117 97 c2xznM_ not modelled 6.3 23 PDB header:ribosome Chain: M: PDB Molecule:rps18e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 98 c2cpwA_ not modelled 6.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 99 d1d1na_ not modelled 6.2 40 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0