Phyre 2 Results for P0AEZ9

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Email | l.a.kelley@imperial.ac.uk
Description | P0AEZ9
Date | Thu Jan 5 11:24:43 GMT 2012
Unique Job ID | 366d9a69d91f1ad5

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1mkza_
Top template information
Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
168 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | Q | V | S | T | E | F | I | P | T | R | I | A | I | L | T | V | S | N | R | R | G | E | E | D | D | T | S | G | H | Y | L | R | D | S | A | Q | E | A | G | H | H | V | V | D | K | A | I | V | K | E | N | R | Y | A | I | R | A | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | S | A | W | I | A | S | D | D | V | Q | V | V | L | I | T | G | G | T | G | L | T | E | G | D | Q | A | P | E | A | L | L | P | L | F | D | R | E | V | E | G | F | G | E | V | F | R | M | L | S | F | E | E | I | G | T | S | T | L | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? |  |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170
Sequence |  | S | R | A | V | A | G | V | A | N | K | T | L | I | F | A | M | P | G | S | T | K | A | C | R | T | A | W | E | N | I | I | A | P | Q | L | D | A | R | T | R | P | C | N | F | H | P | H | L | K | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1mkza_ |

### PDB 1mkz chain A

Region: 3 - 170
Aligned: 168
Modelled: 168
Confidence: 100.0%
Identity: 98%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
2 |
| d1y5ea1 |

### PDB 1y5e chain A domain 1

Region: 9 - 161
Aligned: 153
Modelled: 153
Confidence: 100.0%
Identity: 42%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
3 |
| c3rfqC_ |

### PDB 3rfq chain C

Region: 7 - 161
Aligned: 152
Modelled: 155
Confidence: 100.0%
Identity: 28%
PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum

Phyre2
4 |
| c2pjkA_ |

### PDB 2pjk chain A

Region: 9 - 163
Aligned: 155
Modelled: 155
Confidence: 100.0%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii

Phyre2
5 |
| c2is8A_ |

### PDB 2is8 chain A

Region: 11 - 167
Aligned: 155
Modelled: 157
Confidence: 100.0%
Identity: 33%
PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8

Phyre2
6 |
| d1uuya_ |

### PDB 1uuy chain A

Region: 9 - 160
Aligned: 150
Modelled: 152
Confidence: 100.0%
Identity: 31%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
7 |
| d2f7wa1 |

### PDB 2f7w chain A domain 1

Region: 10 - 166
Aligned: 155
Modelled: 157
Confidence: 100.0%
Identity: 26%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
8 |
| d1jlja_ |

### PDB 1jlj chain A

Region: 9 - 160
Aligned: 150
Modelled: 152
Confidence: 100.0%
Identity: 31%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
9 |
| c2g4rB_ |

### PDB 2g4r chain B

Region: 12 - 159
Aligned: 144
Modelled: 148
Confidence: 100.0%
Identity: 29%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga

Phyre2
10 |
| d2g2ca1 |

### PDB 2g2c chain A domain 1

Region: 10 - 159
Aligned: 144
Modelled: 150
Confidence: 100.0%
Identity: 19%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
11 |
| d1di6a_ |

### PDB 1di6 chain A

Region: 10 - 167
Aligned: 152
Modelled: 158
Confidence: 100.0%
Identity: 26%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
12 |
| c2nqqA_ |

### PDB 2nqq chain A

Region: 8 - 169
Aligned: 147
Modelled: 153
Confidence: 100.0%
Identity: 18%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q

Phyre2
13 |
| c3kbqA_ |

### PDB 3kbq chain A

Region: 12 - 155
Aligned: 142
Modelled: 144
Confidence: 100.0%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum

Phyre2
14 |
| c2fu3A_ |

### PDB 2fu3 chain A

Region: 8 - 170
Aligned: 150
Modelled: 163
Confidence: 100.0%
Identity: 21%
PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain

Phyre2
15 |
| d2nqra3 |

### PDB 2nqr chain A domain 3

Region: 11 - 162
Aligned: 137
Modelled: 152
Confidence: 100.0%
Identity: 19%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
16 |
| d2ftsa3 |

### PDB 2fts chain A domain 3

Region: 12 - 163
Aligned: 143
Modelled: 152
Confidence: 100.0%
Identity: 19%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
17 |
| c1uz5A_ |

### PDB 1uz5 chain A

Region: 8 - 169
Aligned: 142
Modelled: 162
Confidence: 100.0%
Identity: 20%
PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii

Phyre2
18 |
| d1uz5a3 |

### PDB 1uz5 chain A domain 3

Region: 12 - 162
Aligned: 131
Modelled: 151
Confidence: 99.9%
Identity: 21%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
19 |
| d1wu2a3 |

### PDB 1wu2 chain A domain 3

Region: 9 - 164
Aligned: 125
Modelled: 137
Confidence: 99.9%
Identity: 14%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
20 |
| c1wu2B_ |

### PDB 1wu2 chain B

Region: 8 - 169
Aligned: 127
Modelled: 139
Confidence: 99.9%
Identity: 16%
PDB header:structural genomics,biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein;
PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1mkza_ |
|  | 100.0 | 98 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
2 | d1y5ea1 |
|  | 100.0 | 42 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
3 | c3rfqC_ |
|  | 100.0 | 28 | PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
4 | c2pjkA_ |
|  | 100.0 | 29 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
5 | c2is8A_ |
|  | 100.0 | 33 | PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
6 | d1uuya_ |
|  | 100.0 | 31 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
7 | d2f7wa1 |
|  | 100.0 | 26 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
8 | d1jlja_ |
|  | 100.0 | 31 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
9 | c2g4rB_ |
|  | 100.0 | 29 | PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga
10 | d2g2ca1 |
|  | 100.0 | 19 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
11 | d1di6a_ |
|  | 100.0 | 26 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
12 | c2nqqA_ |
|  | 100.0 | 18 | PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q
13 | c3kbqA_ |
|  | 100.0 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
14 | c2fu3A_ |
|  | 100.0 | 21 | PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain
15 | d2nqra3 |
|  | 100.0 | 19 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
16 | d2ftsa3 |
|  | 100.0 | 19 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
17 | c1uz5A_ |
|  | 100.0 | 20 | PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
18 | d1uz5a3 |
|  | 99.9 | 21 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
19 | d1wu2a3 |
|  | 99.9 | 14 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
20 | c1wu2B_ |
|  | 99.9 | 16 | PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3
21 | d1xi8a3 |
| not modelled | 99.9 | 21 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
22 | d1wl8a1 |
| not modelled | 93.0 | 14 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
23 | d1nn4a_ |
| not modelled | 92.5 | 20 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
24 | c3qd5B_ |
| not modelled | 92.3 | 21 | PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
25 | c3he8A_ |
| not modelled | 92.3 | 22 | PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
26 | c2xecD_ |
| not modelled | 91.7 | 11 | PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
27 | d1o1xa_ |
| not modelled | 91.6 | 23 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
28 | d1i7qb_ |
| not modelled | 91.6 | 19 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
29 | c3k7pA_ |
| not modelled | 90.9 | 14 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
30 | c3onoA_ |
| not modelled | 90.7 | 25 | PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
31 | c3rgwS_ |
| not modelled | 90.6 | 13 | PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster
32 | c2yxbA_ |
| not modelled | 90.5 | 12 | PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
33 | d1a9xb2 |
| not modelled | 90.3 | 12 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
34 | c2ppwA_ |
| not modelled | 89.8 | 16 | PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
35 | d1i1qb_ |
| not modelled | 89.5 | 19 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
36 | c3m1pA_ |
| not modelled | 89.4 | 14 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
37 | c3s5pA_ |
| not modelled | 89.2 | 22 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
38 | d2a9va1 |
| not modelled | 89.0 | 13 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
39 | c3a9rA_ |
| not modelled | 88.9 | 13 | PDB header:isomerase Chain: A: PDB Molecule:d-arabinose isomerase; PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
40 | c3p2yA_ |
| not modelled | 88.6 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:alanine dehydrogenase/pyridine nucleotide transhydrogenase; PDBTitle: crystal structure of alanine dehydrogenase/pyridine nucleotide2 transhydrogenase from mycobacterium smegmatis
41 | d1gpma2 |
| not modelled | 88.0 | 22 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
42 | d2nu7b1 |
| not modelled | 87.5 | 13 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
43 | d1vcoa1 |
| not modelled | 87.3 | 19 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
44 | d2vvpa1 |
| not modelled | 86.9 | 15 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
45 | d1pjca1 |
| not modelled | 86.8 | 14 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
46 | d1frfs_ |
| not modelled | 85.3 | 12 | Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit
47 | c2vpiA_ |
| not modelled | 85.2 | 14 | PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain
48 | c1z0zC_ |
| not modelled | 84.9 | 15 | PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
49 | d1z0sa1 |
| not modelled | 84.8 | 15 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like
50 | c3l4eA_ |
| not modelled | 83.9 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
51 | d1yq9a1 |
| not modelled | 83.9 | 13 | Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit
52 | c1zrsB_ |
| not modelled | 83.8 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase
53 | c3c5yD_ |
| not modelled | 83.4 | 22 | PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
54 | c3hr4C_ |
| not modelled | 82.7 | 8 | PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex
55 | c2wpnA_ |
| not modelled | 82.6 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough
56 | d1iowa1 |
| not modelled | 82.4 | 20 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain
57 | c3n0vD_ |
| not modelled | 82.2 | 15 | PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
58 | d1e3da_ |
| not modelled | 81.6 | 11 | Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit
59 | c3myrE_ |
| not modelled | 81.5 | 11 | PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state
60 | d1v93a_ |
| not modelled | 81.5 | 12 | Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase
61 | d1tlla2 |
| not modelled | 81.3 | 15 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
62 | c3cq9C_ |
| not modelled | 81.0 | 14 | PDB header:transferase Chain: C: PDB Molecule:uncharacterized protein lp_1622; PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114
63 | c3melC_ |
| not modelled | 80.9 | 18 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:thiamin pyrophosphokinase family protein; PDBTitle: crystal structure of thiamin pyrophosphokinase family protein from2 enterococcus faecalis, northeast structural genomics consortium3 target efr150
64 | d1jq5a_ |
| not modelled | 80.6 | 10 | Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase
65 | c3d54D_ |
| not modelled | 80.3 | 10 | PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima
66 | c3ihkC_ |
| not modelled | 80.3 | 11 | PDB header:transferase Chain: C: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83
67 | d1ka9h_ |
| not modelled | 80.0 | 12 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
68 | c3l6dB_ |
| not modelled | 80.0 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
69 | d1wuis1 |
| not modelled | 79.9 | 10 | Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit
70 | d1ja1a2 |
| not modelled | 79.9 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
71 | c2vk2A_ |
| not modelled | 79.7 | 12 | PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein
72 | c1j9zB_ |
| not modelled | 79.5 | 11 | PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g
73 | c3ce9A_ |
| not modelled | 79.5 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
74 | c2qvcC_ |
| not modelled | 78.2 | 14 | PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima
75 | d1o7ja_ |
| not modelled | 78.2 | 23 | Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase
76 | d1ydga_ |
| not modelled | 78.2 | 22 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
77 | c3en0A_ |
| not modelled | 78.1 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase
78 | c3louB_ |
| not modelled | 76.9 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
79 | c1h2aS_ |
| not modelled | 76.8 | 10 | PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris
80 | c1tllA_ |
| not modelled | 76.5 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
81 | c3o1lB_ |
| not modelled | 76.2 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
82 | c3lm8D_ |
| not modelled | 75.7 | 13 | PDB header:transferase Chain: D: PDB Molecule:thiamine pyrophosphokinase; PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677
83 | d1bvyf_ |
| not modelled | 75.5 | 7 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
84 | c1bvyF_ |
| not modelled | 75.5 | 7 | PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
85 | d1u2ma_ |
| not modelled | 75.4 | 18 | Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like
86 | d2qv7a1 |
| not modelled | 74.9 | 15 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like
87 | d1tjya_ |
| not modelled | 74.8 | 10 | Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like
88 | c3kklA_ |
| not modelled | 74.6 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
89 | c3h5lB_ |
| not modelled | 74.6 | 24 | PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi
90 | c1fuiB_ |
| not modelled | 73.3 | 16 | PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli
91 | c3r74B_ |
| not modelled | 73.3 | 16 | PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
92 | d1s1ma1 |
| not modelled | 72.8 | 10 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
93 | c2an1D_ |
| not modelled | 72.3 | 17 | PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
94 | d2naca2 |
| not modelled | 71.7 | 19 | Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain
95 | d1a9xa3 |
| not modelled | 71.6 | 33 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like
96 | c1np3B_ |
| not modelled | 71.5 | 27 | PDB header:oxidoreductase Chain: B: PDB Molecule:ketol-acid reductoisomerase; PDBTitle: crystal structure of class i acetohydroxy acid isomeroreductase from2 pseudomonas aeruginosa
97 | d2auna2 |
| not modelled | 71.5 | 11 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like
98 | c3s40C_ |
| not modelled | 71.4 | 8 | PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
99 | d1fmfa_ |
| not modelled | 71.1 | 15 | Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain
100 | d2b4aa1 |
| not modelled | 69.3 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
101 | d7reqa2 |
| not modelled | 69.1 | 18 | Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain
102 | d1zl0a2 |
| not modelled | 68.1 | 13 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like
103 | d1t0ba_ |
| not modelled | 67.5 | 16 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like
104 | d1n57a_ |
| not modelled | 67.2 | 13 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI
105 | d2nv0a1 |
| not modelled | 66.7 | 15 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
106 | c1l9xA_ |
| not modelled | 65.9 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase
107 | d1l9xa_ |
| not modelled | 65.9 | 24 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
108 | d1nyra1 |
| not modelled | 65.8 | 13 | Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS
109 | c2g04B_ |
| not modelled | 65.7 | 16 | PDB header:isomerase Chain: B: PDB Molecule:probable fatty-acid-coa racemase far; PDBTitle: crystal structure of fatty acid-coa racemase from mycobacterium2 tuberculosis h37rv
110 | c2i2aA_ |
| not modelled | 65.2 | 18 | PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
111 | d1cc1s_ |
| not modelled | 65.0 | 12 | Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit
112 | d1i36a2 |
| not modelled | 64.2 | 25 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
113 | d1qf6a1 |
| not modelled | 63.9 | 19 | Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS
114 | d1dxya2 |
| not modelled | 63.8 | 12 | Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain
115 | d1vpda2 |
| not modelled | 63.7 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
116 | d1o2da_ |
| not modelled | 63.7 | 19 | Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase
117 | c3lftA_ |
| not modelled | 63.4 | 14 | PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a
118 | c2ywcC_ |
| not modelled | 63.3 | 14 | PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
119 | d2bona1 |
| not modelled | 63.2 | 15 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like
120 | c2eezG_ |
| not modelled | 63.1 | 14 | PDB header:oxidoreductase Chain: G: PDB Molecule:alanine dehydrogenase; PDBTitle: crystal structure of alanine dehydrogenase from themus thermophilus

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0