BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (130 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact... 270 1e-71 UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter... 119 2e-26 UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac... 84 2e-15 UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba... 56 3e-07 UniRef50_C5SBF9 Response regulator receiver protein n=1 Tax=Allo... 43 0.003 UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent... 41 0.014 UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis... 40 0.023 UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati... 39 0.075 >UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae RepID=YFED_ECOLI Length = 130 Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/130 (100%), Positives = 130/130 (100%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ Sbjct: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF Sbjct: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 Query: 121 LARLDIDESA 130 LARLDIDESA Sbjct: 121 LARLDIDESA 130 >UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae RepID=C4XBN9_KLEPN Length = 130 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/131 (48%), Positives = 86/131 (65%), Gaps = 10/131 (7%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 M +L++KMT ELA+CLG+A+QT+NRW+REK W+TE PGVKGGRARL+++D V EF+ Sbjct: 1 MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLT 60 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARA-----PAYRQIINAIDNMTDIEQEKVAQFLSRE 115 N PA + + + +AE +PGA +RQI + MT EQ ++ L+RE Sbjct: 61 NIPARRH----LLTDNHLAE-SPGAYLVNEADAIWRQITETLQLMTPAEQLQLRDLLARE 115 Query: 116 GIRNFLARLDI 126 GI FLARL I Sbjct: 116 GISGFLARLGI 126 >UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae RepID=YFEC_ECOL6 Length = 114 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 8 MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67 MT +ELA G ++QT+N+W+R++GW T PGV+GG+ARL+ V+ QV E+I+N Sbjct: 1 MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55 Query: 68 TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126 E E E A AP ++ MT +EQ++ L REGI L RL I Sbjct: 56 -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110 Query: 127 DES 129 +S Sbjct: 111 RDS 113 >UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MKV6_ENTS8 Length = 129 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 M + MT EL E G Q ++RW R+ GWK G KGG A LIL+ QV ++ Sbjct: 1 MNQFTRWMTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFL 59 Query: 61 NTPAFHNTPMLME-AEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119 T + L EE A Y Q I ++ ++ EQ ++++ +S EG Sbjct: 60 ATDKLRYSAHLYNRIEETPAPYVTWDN-EMMAQFIRTLEMLSPQEQARLSELISEEGAAG 118 Query: 120 FLARLDI 126 + RL + Sbjct: 119 LVKRLGL 125 >UniRef50_C5SBF9 Response regulator receiver protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBF9_CHRVI Length = 220 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLI----LVDTQVC 56 MK++R+ +TT E+A+ GV +TV RWI + K PG R RLI +D Sbjct: 1 MKQMRS-LTTGEIADYCGVNLRTVIRWIEKGHLPAYKLPGRGNNRVRLIDFLSFIDRHGM 59 Query: 57 EFIQNTPAFHNTPMLMEAEERIAE 80 + + N +++E + R+AE Sbjct: 60 PLPEALHGYGNRVLVVEDDRRMAE 83 >UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae RepID=C4K715_HAMD5 Length = 115 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 20/125 (16%) Query: 8 MTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF-IQNTPA 64 + +EL G+ + Q +N+ R +GWK + GV+G + E+ I + P Sbjct: 6 FSAKELIHSPGLPSSTQGINQMARRQGWKHRRRLGVQG----------KALEYHIDSLP- 54 Query: 65 FHNTPML--MEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122 P+L + +E +Y+ + P + I A +TD E+EK+ FL REGI+ + Sbjct: 55 ---KPILKQLRLKEDAEKYSLNQQDP-FTIWIEAYRQLTDSEREKLIAFLFREGIQGLIK 110 Query: 123 RLDID 127 RL D Sbjct: 111 RLSND 115 >UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NW40_SODGM Length = 127 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 18/122 (14%) Query: 8 MTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAF 65 + T EL G+ K Q +NR RE+GW+ + G +G + + ++ T + Sbjct: 8 IATHELIGVGGLPKTRQGLNRRAREEGWQKRRREGARGKAVEYSW--HSLPDMVKKTLSL 65 Query: 66 HNTPMLMEAEERIAEY--APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLAR 123 P AEY +P + + +I ++D E++ + F+ REG+ N L R Sbjct: 66 RTNP---------AEYQLSPQETSATWNEIYR---QLSDAERDFIVSFIVREGVLNLLKR 113 Query: 124 LD 125 LD Sbjct: 114 LD 115 >UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G8Y9_SERP5 Length = 90 Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 14/101 (13%) Query: 29 REKGWKTEKFPGVKGGRARLILVDTQVCEF-IQNTPAFHNTPMLMEAEERIAEYAPGARA 87 R +GW + + GV+G + E+ I + PA T L+ +E A Y + Sbjct: 3 RREGWNSRRRKGVQG----------KALEYHIDSLPA--GTRNLLVLKEEPASYQVERKD 50 Query: 88 PAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDE 128 P I ++T+ E+EKV FL REGI + LAR+ D+ Sbjct: 51 PLV-VWIEYYYHLTECEREKVLAFLIREGIGSLLARISADK 90 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact... 197 9e-50 UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba... 166 1e-40 UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter... 165 3e-40 UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac... 149 2e-35 Sequences not found previously or not previously below threshold: UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding... 54 2e-06 UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent... 51 1e-05 UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding... 50 3e-05 UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=... 48 7e-05 UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding... 48 8e-05 UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis... 47 2e-04 UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding... 46 4e-04 UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding... 44 0.002 UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-bindin... 42 0.007 UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati... 41 0.012 >UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae RepID=YFED_ECOLI Length = 130 Score = 197 bits (501), Expect = 9e-50, Method: Composition-based stats. Identities = 130/130 (100%), Positives = 130/130 (100%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ Sbjct: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF Sbjct: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 Query: 121 LARLDIDESA 130 LARLDIDESA Sbjct: 121 LARLDIDESA 130 >UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MKV6_ENTS8 Length = 129 Score = 166 bits (421), Expect = 1e-40, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 M + MT EL E G Q ++RW R+ GWK G KGG A LIL+ QV ++ Sbjct: 1 MNQFTRWMTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFL 59 Query: 61 NTPAFHNTPMLMEA-EERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119 T + L EE A Y Q I ++ ++ EQ ++++ +S EG Sbjct: 60 ATDKLRYSAHLYNRIEETPAPYVTWDN-EMMAQFIRTLEMLSPQEQARLSELISEEGAAG 118 Query: 120 FLARLDIDE 128 + RL + + Sbjct: 119 LVKRLGLRD 127 >UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae RepID=C4XBN9_KLEPN Length = 130 Score = 165 bits (418), Expect = 3e-40, Method: Composition-based stats. Identities = 60/126 (47%), Positives = 79/126 (62%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 M +L++KMT ELA+CLG+A+QT+NRW+REK W+TE PGVKGGRARL+++D V EF+ Sbjct: 1 MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLT 60 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 N PA + E Y +RQI + MT EQ ++ L+REGI F Sbjct: 61 NIPARRHLLTDNHLAESPGAYLVNEADAIWRQITETLQLMTPAEQLQLRDLLAREGISGF 120 Query: 121 LARLDI 126 LARL I Sbjct: 121 LARLGI 126 >UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae RepID=YFEC_ECOL6 Length = 114 Score = 149 bits (376), Expect = 2e-35, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 8 MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67 MT +ELA G ++QT+N+W+R++GW T PGV+GG+ARL+ V+ QV E+I+N Sbjct: 1 MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55 Query: 68 TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126 E E E A AP ++ MT +EQ++ L REGI L RL I Sbjct: 56 -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110 Query: 127 DES 129 +S Sbjct: 111 RDS 113 >UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding n=2 Tax=Edwardsiella RepID=C5B7F4_EDWI9 Length = 114 Score = 53.7 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 14/123 (11%) Query: 5 RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 + + +ELA G Q +N+ + +GW+ ++ GV+G + E+ + Sbjct: 3 KEWYSAKELAGIGGFPSTPQAINQRAKSEGWRRQRRSGVQG----------KAVEYHISC 52 Query: 63 PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122 L+ +E A+Y + P + M++ E++KV + R GI FL Sbjct: 53 FPPEVVDELLARDE-QAQYLISSNQPEKVWYSILLQ-MSEEERKKVTSLILRIGINEFLR 110 Query: 123 RLD 125 RL Sbjct: 111 RLG 113 >UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae RepID=C4K715_HAMD5 Length = 115 Score = 50.6 bits (119), Expect = 1e-05, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%) Query: 5 RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 + + +EL G+ + Q +N+ R +GWK + GV+G +A +D+ + + I Sbjct: 3 KEWFSAKELIHSPGLPSSTQGINQMARRQGWKHRRRLGVQG-KALEYHIDS-LPKPILKQ 60 Query: 63 PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122 + + I A +TD E+EK+ FL REGI+ + Sbjct: 61 LRLKEDAEKYSL-NQQDPFTIW---------IEAYRQLTDSEREKLIAFLFREGIQGLIK 110 Query: 123 RLDID 127 RL D Sbjct: 111 RLSND 115 >UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding protein n=6 Tax=Enterobacteriaceae RepID=D2BRS4_DICD5 Length = 140 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 5 RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLIL--VDTQVCEFIQ 60 + TT EL G+ ++Q +N+ ++ GW+ + GV+G + + +V + Sbjct: 3 KTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLPEEVKATLM 62 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 T M A + ++ + GA+ + QI ++ E+ ++ + REG + Sbjct: 63 RATLMGTTLMRETAPDYVSAASAGAQEYTWIQI---YHQLSAEERTRLIGHILREGAMSV 119 Query: 121 LARL 124 LARL Sbjct: 120 LARL 123 >UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=B8DLF1_DESVM Length = 728 Score = 48.3 bits (113), Expect = 7e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 MK ++ T ELA LGV + V R +GW+ + PG GG L+ V + Sbjct: 1 MKTFKDAYTAGELAAALGVTDRAVQMRARREGWQARRKPGRGGGNEWLV-VSMPEGTALA 59 Query: 61 NTPAFHNTPMLMEAEERI----AEYAPGARAPA 89 A T + A + A APGA P Sbjct: 60 VRMAEERTAVAAAASDHPPTTSAPSAPGAPTPL 92 >UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding n=31 Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY Length = 115 Score = 48.3 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 5 RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 + +ELA G+ + Q +N + +GW+ + GV+G + E+ + Sbjct: 3 KEWFAAKELAGLEGLPSSPQGINLMAKREGWEQRRRRGVQG----------KAVEYHIGS 52 Query: 63 PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122 L EE A+YA + P + A T+ E+E+V F+ REG ++ + Sbjct: 53 LPITILNSLQLREE-PAQYATTRQDPL-TLWVEAYYRFTEAEREQVISFIFREGAKSLIE 110 Query: 123 RLDID 127 RL++D Sbjct: 111 RLEMD 115 >UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NW40_SODGM Length = 127 Score = 46.7 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 14/126 (11%) Query: 5 RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 + + T EL G+ +Q +NR RE+GW+ + G +G + ++ T Sbjct: 5 KEWIATHELIGVGGLPKTRQGLNRRAREEGWQKRRREGARGKAVEYSWHSLP--DMVKKT 62 Query: 63 PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122 + P + +P + + +I ++D E++ + F+ REG+ N L Sbjct: 63 LSLRTNPAEYQL-------SPQETSATWNEIYR---QLSDAERDFIVSFIVREGVLNLLK 112 Query: 123 RLDIDE 128 RLD + Sbjct: 113 RLDYPD 118 >UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding n=9 Tax=Enterobacteriaceae RepID=C6CJR2_DICZE Length = 136 Score = 46.0 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 13/126 (10%) Query: 1 MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58 M + TT EL G+ ++Q +N+ ++ GW+ + GV+G + E Sbjct: 5 MMMEKTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLP--EE 62 Query: 59 IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118 ++ T +P + + I ++ E+ ++ + REG Sbjct: 63 VKTTLMRETSPDYAVVTPTNVQESTW---------IQIYHQLSVEERTRLIGHILREGAM 113 Query: 119 NFLARL 124 LARL Sbjct: 114 GMLARL 119 >UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding n=3 Tax=Enterobacteriaceae RepID=A8GHQ2_SERP5 Length = 116 Score = 44.0 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 6 NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTP 63 EL G+ + Q +N R +GW + + GV+G + E+ N+ Sbjct: 4 EWFAARELTGIAGLPSSPQGINLMARREGWISRRRKGVQG----------KAVEYHINSL 53 Query: 64 AFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLAR 123 +L+ E+ AEY + P + ++++ E+EKV FL REGI + LA Sbjct: 54 PIGARSLLVLQED-PAEYQLERQDPL-AVWVEYYYHLSESEREKVLTFLMREGIDSLLAL 111 Query: 124 LDIDE 128 + +E Sbjct: 112 IAAEE 116 >UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-binding n=5 Tax=Enterobacteriaceae RepID=C2LKG3_PROMI Length = 115 Score = 41.7 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 14/122 (11%) Query: 5 RNKMTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 + T EL G+ K Q VN + + W +K +G V Sbjct: 3 KEWYTAMELTGIGGLPKSPQGVNAKAKRESWLKQKRTNKQGNG---------VEYHYSCL 53 Query: 63 PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122 P T + +E E +A Y P + A + D EQ+ V + + R+GIR+FL Sbjct: 54 PE--ETLIALELYEPLAHYKLNKEEPL-VIWVKAFQQLNDGEQKTVTELILRDGIRSFLE 110 Query: 123 RL 124 ++ Sbjct: 111 KI 112 >UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G8Y9_SERP5 Length = 90 Score = 40.9 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 12/101 (11%) Query: 28 IREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARA 87 R +GW + + GV+G +A +D + PA T L+ +E A Y + Sbjct: 2 ARREGWNSRRRKGVQG-KALEYHID--------SLPA--GTRNLLVLKEEPASYQVERKD 50 Query: 88 PAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDE 128 P I ++T+ E+EKV FL REGI + LAR+ D+ Sbjct: 51 PLVV-WIEYYYHLTECEREKVLAFLIREGIGSLLARISADK 90 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact... 157 1e-37 UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter... 144 8e-34 UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba... 128 7e-29 UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding... 124 1e-27 UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding... 120 1e-26 UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac... 119 2e-26 UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis... 114 1e-24 UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent... 112 3e-24 UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding... 109 2e-23 UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding... 109 4e-23 UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding... 108 6e-23 UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=... 88 1e-16 Sequences not found previously or not previously below threshold: UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-bindin... 83 2e-15 UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati... 81 9e-15 UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Provide... 74 1e-12 UniRef50_C5S4R0 Putative uncharacterized protein n=1 Tax=Actinob... 66 4e-10 UniRef50_Q58ZD8 MuA transposase subunit-like protein n=6 Tax=Hae... 57 2e-07 UniRef50_Q0EWA9 Transposase and inactivated derivative n=1 Tax=M... 56 3e-07 UniRef50_P07040 Repressor protein CI n=3 Tax=root RepID=RPC1_BPD10 56 3e-07 UniRef50_B0UVF4 Putative uncharacterized protein n=1 Tax=Haemoph... 56 4e-07 UniRef50_B6WSU4 Putative uncharacterized protein n=1 Tax=Desulfo... 54 1e-06 UniRef50_A7JV30 Bacteriophage transposase n=1 Tax=Mannheimia hae... 53 2e-06 UniRef50_Q30W02 Bacteriophage transposase A protein, putative n=... 53 3e-06 UniRef50_C0N301 Mu DNA binding, I gamma subdomain family n=5 Tax... 53 3e-06 UniRef50_B8DK74 Transposase-like Mu n=3 Tax=Desulfovibrio vulgar... 52 5e-06 UniRef50_A9L0K4 Integrase catalytic region n=2 Tax=Shewanella ba... 51 1e-05 UniRef50_C4LBA7 Integrase catalytic region n=1 Tax=Tolumonas aue... 51 1e-05 UniRef50_Q8EJ30 Transposase, putative n=1 Tax=Shewanella oneiden... 51 2e-05 UniRef50_Q58ZE0 CI repressor-like protein n=5 Tax=Haemophilus in... 50 2e-05 UniRef50_D2YK71 Transposase, putative n=1 Tax=Vibrio mimicus VM5... 48 9e-05 UniRef50_B8GS44 Transposase A n=1 Tax=Thioalkalivibrio sp. HL-Eb... 48 1e-04 UniRef50_A6W3I3 Putative uncharacterized protein n=1 Tax=Marinom... 47 2e-04 UniRef50_A6D441 Putative uncharacterized protein n=1 Tax=Vibrio ... 47 2e-04 UniRef50_Q0T6N1 Putative repressor protein n=3 Tax=Shigella flex... 47 2e-04 UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersin... 47 2e-04 UniRef50_Q2LQD6 Transposase n=1 Tax=Syntrophus aciditrophicus SB... 47 2e-04 UniRef50_A9D2T9 Transposase, putative n=1 Tax=Hoeflea phototroph... 47 2e-04 UniRef50_P07636 Transposase n=8 Tax=root RepID=TRA_BPMU 46 3e-04 UniRef50_A1RM55 Integrase, catalytic region n=1 Tax=Shewanella s... 46 4e-04 UniRef50_B7UXK6 Transposase A n=6 Tax=root RepID=B7UXK6_PSEA8 46 5e-04 UniRef50_A7JUV9 Possible transposase n=1 Tax=Mannheimia haemolyt... 44 0.001 UniRef50_A7JV32 Possible bacteriophage transcriptional regulator... 44 0.002 UniRef50_Q2W6I7 Putative uncharacterized protein n=1 Tax=Magneto... 43 0.002 UniRef50_B0US86 Transposase-like Mu n=20 Tax=Pasteurellaceae Rep... 43 0.003 UniRef50_B6IMZ2 Mu transposase, putative n=1 Tax=Rhodospirillum ... 43 0.003 UniRef50_A4JDI5 MuA-transposase/repressor protein CI, DNA-bindin... 43 0.005 UniRef50_Q9CNL1 Putative uncharacterized protein n=1 Tax=Pasteur... 42 0.005 UniRef50_Q125Z1 Integrase, catalytic region n=1 Tax=Polaromonas ... 42 0.005 UniRef50_Q38452 Transposase (Fragment) n=1 Tax=Pseudomonas phage... 42 0.006 UniRef50_B6ISS2 Phage transposase protein A, putative n=1 Tax=Rh... 42 0.006 UniRef50_C5S4Q8 Putative phage transposase n=1 Tax=Actinobacillu... 41 0.013 UniRef50_B8FGN6 Mu transposase n=1 Tax=Desulfatibacillum alkeniv... 41 0.016 UniRef50_A3VYG1 Transposase, putative n=5 Tax=Rhodobacteraceae R... 39 0.057 UniRef50_P06019 Repressor protein CI n=3 Tax=root RepID=RPC1_BPMU 38 0.070 UniRef50_O05069 Mu-like prophage FluMu transposase A n=5 Tax=Pas... 38 0.087 >UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae RepID=YFED_ECOLI Length = 130 Score = 157 bits (396), Expect = 1e-37, Method: Composition-based stats. Identities = 130/130 (100%), Positives = 130/130 (100%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ Sbjct: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF Sbjct: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 Query: 121 LARLDIDESA 130 LARLDIDESA Sbjct: 121 LARLDIDESA 130 >UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae RepID=C4XBN9_KLEPN Length = 130 Score = 144 bits (363), Expect = 8e-34, Method: Composition-based stats. Identities = 60/126 (47%), Positives = 79/126 (62%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 M +L++KMT ELA+CLG+A+QT+NRW+REK W+TE PGVKGGRARL+++D V EF+ Sbjct: 1 MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLT 60 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 N PA + E Y +RQI + MT EQ ++ L+REGI F Sbjct: 61 NIPARRHLLTDNHLAESPGAYLVNEADAIWRQITETLQLMTPAEQLQLRDLLAREGISGF 120 Query: 121 LARLDI 126 LARL I Sbjct: 121 LARLGI 126 >UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MKV6_ENTS8 Length = 129 Score = 128 bits (320), Expect = 7e-29, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 M + MT EL E G Q ++RW R+ GWK G KGG A LIL+ QV ++ Sbjct: 1 MNQFTRWMTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFL 59 Query: 61 NTPAFHNTPMLMEA-EERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119 T + L EE A Y Q I ++ ++ EQ ++++ +S EG Sbjct: 60 ATDKLRYSAHLYNRIEETPAPYVTWDNE-MMAQFIRTLEMLSPQEQARLSELISEEGAAG 118 Query: 120 FLARLDIDE 128 + RL + + Sbjct: 119 LVKRLGLRD 127 >UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding protein n=6 Tax=Enterobacteriaceae RepID=D2BRS4_DICD5 Length = 140 Score = 124 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQ--VCEF 58 + TT EL G+ ++Q +N+ ++ GW+ + GV+G + V Sbjct: 1 MEKTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLPEEVKAT 60 Query: 59 IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118 + T M A + ++ + GA+ + QI ++ E+ ++ + REG Sbjct: 61 LMRATLMGTTLMRETAPDYVSAASAGAQEYTWIQI---YHQLSAEERTRLIGHILREGAM 117 Query: 119 NFLARLDI 126 + LARL+ Sbjct: 118 SVLARLEN 125 >UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding n=9 Tax=Enterobacteriaceae RepID=C6CJR2_DICZE Length = 136 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 13/128 (10%) Query: 1 MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58 M + TT EL G+ ++Q +N+ ++ GW+ + GV+G + E Sbjct: 5 MMMEKTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLP--EE 62 Query: 59 IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118 ++ T +P + + I ++ E+ ++ + REG Sbjct: 63 VKTTLMRETSPDYAVVTPTNVQESTW---------IQIYHQLSVEERTRLIGHILREGAM 113 Query: 119 NFLARLDI 126 LARL+ Sbjct: 114 GMLARLEN 121 >UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae RepID=YFEC_ECOL6 Length = 114 Score = 119 bits (299), Expect = 2e-26, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 8 MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67 MT +ELA G ++QT+N+W+R++GW T PGV+GG+ARL+ V+ QV E+I+N Sbjct: 1 MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55 Query: 68 TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126 E E E A AP ++ MT +EQ++ L REGI L RL I Sbjct: 56 -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110 Query: 127 DES 129 +S Sbjct: 111 RDS 113 >UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NW40_SODGM Length = 127 Score = 114 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 14/130 (10%) Query: 1 MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58 M+ + + T EL G+ +Q +NR RE+GW+ + G +G + Sbjct: 1 MEIKKEWIATHELIGVGGLPKTRQGLNRRAREEGWQKRRREGARGKAVEYSWHSLP--DM 58 Query: 59 IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118 ++ T + P + +P + + +I ++D E++ + F+ REG+ Sbjct: 59 VKKTLSLRTNPAEYQL-------SPQETSATWNEI---YRQLSDAERDFIVSFIVREGVL 108 Query: 119 NFLARLDIDE 128 N L RLD + Sbjct: 109 NLLKRLDYPD 118 >UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae RepID=C4K715_HAMD5 Length = 115 Score = 112 bits (280), Expect = 3e-24, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 14/127 (11%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 + + +EL G+ + Q +N+ R +GWK + GV+G + + I Sbjct: 1 MDKEWFSAKELIHSPGLPSSTQGINQMARRQGWKHRRRLGVQGKALEYHIDSLP--KPIL 58 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 + + I A +TD E+EK+ FL REGI+ Sbjct: 59 KQLRLKEDAEKYSL-NQQDPFTIW---------IEAYRQLTDSEREKLIAFLFREGIQGL 108 Query: 121 LARLDID 127 + RL D Sbjct: 109 IKRLSND 115 >UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding n=31 Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY Length = 115 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 + +ELA G+ + Q +N + +GW+ + GV+G + E+ Sbjct: 1 MKKEWFAAKELAGLEGLPSSPQGINLMAKREGWEQRRRRGVQG----------KAVEYHI 50 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 + L EE A+YA + P + A T+ E+E+V F+ REG ++ Sbjct: 51 GSLPITILNSLQLREE-PAQYATTRQDPL-TLWVEAYYRFTEAEREQVISFIFREGAKSL 108 Query: 121 LARLDID 127 + RL++D Sbjct: 109 IERLEMD 115 >UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding n=3 Tax=Enterobacteriaceae RepID=A8GHQ2_SERP5 Length = 116 Score = 109 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 14/128 (10%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 EL G+ + Q +N R +GW + + GV+G + E+ Sbjct: 1 MKNEWFAARELTGIAGLPSSPQGINLMARREGWISRRRKGVQG----------KAVEYHI 50 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 N+ +L+ E+ AEY + P + ++++ E+EKV FL REGI + Sbjct: 51 NSLPIGARSLLVLQED-PAEYQLERQDPL-AVWVEYYYHLSESEREKVLTFLMREGIDSL 108 Query: 121 LARLDIDE 128 LA + +E Sbjct: 109 LALIAAEE 116 >UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding n=2 Tax=Edwardsiella RepID=C5B7F4_EDWI9 Length = 114 Score = 108 bits (269), Expect = 6e-23, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 14/125 (11%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 + + +ELA G Q +N+ + +GW+ ++ GV+G + E+ Sbjct: 1 MNKEWYSAKELAGIGGFPSTPQAINQRAKSEGWRRQRRSGVQG----------KAVEYHI 50 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 + L+ +E A+Y + P + M++ E++KV + R GI F Sbjct: 51 SCFPPEVVDELLARDE-QAQYLISSNQPEKVWYSILL-QMSEEERKKVTSLILRIGINEF 108 Query: 121 LARLD 125 L RL Sbjct: 109 LRRLG 113 >UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=B8DLF1_DESVM Length = 728 Score = 87.6 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 MK ++ T ELA LGV + V R +GW+ + PG GG L+ V + Sbjct: 1 MKTFKDAYTAGELAAALGVTDRAVQMRARREGWQARRKPGRGGGNEWLV-VSMPEGTALA 59 Query: 61 NTPAFHNTPMLMEAEERI----AEYAPGARAPA 89 A T + A + A APGA P Sbjct: 60 VRMAEERTAVAAAASDHPPTTSAPSAPGAPTPL 92 >UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-binding n=5 Tax=Enterobacteriaceae RepID=C2LKG3_PROMI Length = 115 Score = 83.4 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 14/124 (11%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 + T EL G+ + Q VN + + W +K +G E+ Sbjct: 1 MKKEWYTAMELTGIGGLPKSPQGVNAKAKRESWLKQKRTNKQGNGV----------EYHY 50 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 + L E E +A Y P + A + D EQ+ V + + R+GIR+F Sbjct: 51 SCLPEETLIAL-ELYEPLAHYKLNKEEPL-VIWVKAFQQLNDGEQKTVTELILRDGIRSF 108 Query: 121 LARL 124 L ++ Sbjct: 109 LEKI 112 >UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G8Y9_SERP5 Length = 90 Score = 81.4 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 12/101 (11%) Query: 27 WIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGAR 86 R +GW + + GV+G + E+ ++ +L+ EE A Y + Sbjct: 1 MARREGWNSRRRKGVQG----------KALEYHIDSLPAGTRNLLVLKEE-PASYQVERK 49 Query: 87 APAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDID 127 P I ++T+ E+EKV FL REGI + LAR+ D Sbjct: 50 DPL-VVWIEYYYHLTECEREKVLAFLIREGIGSLLARISAD 89 >UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Providencia RepID=B6XCH8_9ENTR Length = 118 Score = 74.1 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 14/121 (11%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 ++ +T +EL G+ + Q +N R + W + K G++G + + Sbjct: 1 MIKEWLTAKELVGRQGLPSSTQGINAMARRENWLSRKRRGIQGKALEYHISSIPI----- 55 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 + E Y A+ A + ++ E+ V F+ R+G Sbjct: 56 ------DLEEPTVMYEAPRIYHVKRDEHAHI-WQEAYNQLSHDERVAVLSFIMRKGALAL 108 Query: 121 L 121 + Sbjct: 109 I 109 >UniRef50_C5S4R0 Putative uncharacterized protein n=1 Tax=Actinobacillus minor NM305 RepID=C5S4R0_9PAST Length = 179 Score = 66.0 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 1 MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQV 55 M + + ELA G+ Q +N+ R + W+ GV+GG Sbjct: 1 MGNFKEWFSASELAGIQGLPKTPQGINKRARTQNWQKRNKDGVQGGAVEYHYTSFPE 57 >UniRef50_Q58ZD8 MuA transposase subunit-like protein n=6 Tax=Haemophilus influenzae RepID=Q58ZD8_HAEIN Length = 669 Score = 56.8 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 4 LRNKMTTEELAECLGVA--KQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61 ++N +T +E+A G++ VNR R++ W + GV+GG + +Q Sbjct: 1 MKNWVTAKEIAGIGGLSKHPTNVNRLARKEKWIFREIQGVQGGGYEYSFSSLPL--EVQT 58 Query: 62 TPAFHNTPMLMEAEERIAEYAPGARAPAYRQIIN-AIDNMTDIEQEK 107 ++ L +E A+ + + + E+ Sbjct: 59 EYLLKHSEELKVNKENNDSNQQTMIESAWNVLASATFEQEKRAERRF 105 >UniRef50_Q0EWA9 Transposase and inactivated derivative n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWA9_9PROT Length = 742 Score = 56.4 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 8/117 (6%) Query: 7 KMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE-FIQNTP 63 M ELA G+ + + + +GW++ K KG Sbjct: 4 WMPASELAGLPGLPGTDRGIRKLADREGWQSRKRQ--KGKGLEYSPSSLPEVTRTHLAHL 61 Query: 64 AFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 + + + A+YA P M D E + + ++R GI F Sbjct: 62 SVKAAMDEVSKQPEYAQYA--EAEPVESIPGVKTREMLDEEAAEHRRLIAR-GIAEF 115 >UniRef50_P07040 Repressor protein CI n=3 Tax=root RepID=RPC1_BPD10 Length = 174 Score = 56.4 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 14/134 (10%) Query: 1 MKRL--RNKMTTEELAECLGVAKQTVN--RWIREKGWKTEKFPGVKGGRARLILVDTQVC 56 M + +EL GV K N R + W + G KG Sbjct: 1 MMSFEIKEWFNAKELEGMPGVPKLATNITRKAVAEDWVKRQRHGGKGV----------AY 50 Query: 57 EFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREG 116 E+ N+ + A ++I A+ +T EQ + + G Sbjct: 51 EYHINSLPEETRRAIKGASLSDKPVHTSIVHTVDERLIYAMSFLTPDEQAAAVEIIRVAG 110 Query: 117 IRNFLARLDIDESA 130 I+ + + + A Sbjct: 111 IKGLMPTIVSKDKA 124 >UniRef50_B0UVF4 Putative uncharacterized protein n=1 Tax=Haemophilus somnus 2336 RepID=B0UVF4_HAES2 Length = 145 Score = 56.0 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 4 LRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61 ++ T +EL + G+ Q + + ++ W+ + GVKG + D Sbjct: 1 MKEWYTLKELLDVGGLPSTPQGIILYAKKDKWRRRRVSGVKGNVFEYYVYDMPESVQTSL 60 Query: 62 TPAFHNTPMLMEAEE 76 + E + Sbjct: 61 GVTKETLALKQELID 75 >UniRef50_B6WSU4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSU4_9DELT Length = 697 Score = 54.5 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLI-LVDTQVCEFI 59 M + +T+ELA LG+ ++V+ + +GW+ G GG+ ++ + ++ + + Sbjct: 1 MNTIATTYSTQELAHYLGITVKSVHIRAKREGWQALPRAGRGGGKLWVVSSMPAEIRDRL 60 Query: 60 QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLS 113 + ++ EE A + G+ A ++D E+ V L+ Sbjct: 61 ASALLRQPAAII---EESAACASIGSNICAPIGTAGNGPALSDRERAIVTARLA 111 >UniRef50_A7JV30 Bacteriophage transposase n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JV30_PASHA Length = 656 Score = 53.3 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 4 LRNKMTTEELAECLGVA--KQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61 ++ +E+A GV +V+R ++GW+ + GV+G L I+ Sbjct: 1 MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVTYEYHLTSLP----IET 56 Query: 62 TPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEK 107 L + AE P PA +I ++N TD ++K Sbjct: 57 QQQLRLNAALAVIPQA-AELQPKRDDPA---LIARLNNATDKGRDK 98 >UniRef50_Q30W02 Bacteriophage transposase A protein, putative n=4 Tax=Desulfovibrio RepID=Q30W02_DESDG Length = 708 Score = 53.3 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 1 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLI 49 M + ++ T +ELA L V T+ R +GW++ G GG +I Sbjct: 1 MAKAKDAYTAKELAIALNVTVMTITRRAEREGWQSRPRAGRGGGNEWII 49 >UniRef50_C0N301 Mu DNA binding, I gamma subdomain family n=5 Tax=Gammaproteobacteria RepID=C0N301_9GAMM Length = 722 Score = 52.9 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 5 RNKMTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 R T ELA G+ K + VN+ ++GW T + G L V Q Sbjct: 6 REWFTATELANKPGLPKYKRGVNQQASKQGWNTRQVKVRGGSANEYHLSSLPVET--QAA 63 Query: 63 PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFL 112 + P +++ E++ ++ N D Q K+ L Sbjct: 64 LIKQHLPTPVKSSSESTEFS-YDPQALWQHYDNKPQKQKDAAQNKLNLLL 112 >UniRef50_B8DK74 Transposase-like Mu n=3 Tax=Desulfovibrio vulgaris RepID=B8DK74_DESVM Length = 732 Score = 52.2 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 6/103 (5%) Query: 1 MKRLRNKMTTEELAECLGVAKQ-TVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFI 59 M + TT +L LG++ + TV R +GW + G GG L+ + + Sbjct: 1 MASPKEAYTTRDLLPLLGISSESTVIRRASREGWTSRPRKGRGGGNEWLL---ASMPKST 57 Query: 60 QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTD 102 + + E+ P A R+ I A M+ Sbjct: 58 RKALLDGMLRTAAQEAEKNLPALPPLDAADPRRAIAA--RMSP 98 >UniRef50_A9L0K4 Integrase catalytic region n=2 Tax=Shewanella baltica RepID=A9L0K4_SHEB9 Length = 738 Score = 51.4 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Query: 3 RLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 + +T E+AE L V + V +++ W+ ++ G+ GG E+ N+ Sbjct: 1 MTKEWFSTVEIAELLDVGDRRVRDRAKQENWQKQRRQGLGGG-----------FEYHLNS 49 Query: 63 PAFHNTPMLMEAEERIAEYAPGA 85 L + E +P + Sbjct: 50 LPLEARQKLAKQEAEQIATSPTS 72 >UniRef50_C4LBA7 Integrase catalytic region n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBA7_TOLAT Length = 741 Score = 51.0 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 9/118 (7%) Query: 4 LRNKMTTEELAECLGVAKQ---TVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 ++ + ELA +G+ Q V + + WK K KG + + ++ ++ Sbjct: 1 MKEWFISSELAGLVGL-PQYQDGVRKKADREDWKNRKRESGKGLEYHISSLPSETRAYLA 59 Query: 61 NTPAFHN-TPMLMEAEERIAEYAPGARAPAYRQII----NAIDNMTDIEQEKVAQFLS 113 T A + + A+ +A A ++ Q + + ++++ L Sbjct: 60 KTMASETASAIQDHAKAGVAMAALADKSAVSVQAKIENGRKLIALKPEQRKRADSRLL 117 >UniRef50_Q8EJ30 Transposase, putative n=1 Tax=Shewanella oneidensis RepID=Q8EJ30_SHEON Length = 715 Score = 50.6 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 3/106 (2%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 + + +EL + G+ Q + + + W++ K G KG L + + + Sbjct: 1 MNKAWFSPQELLQLPGMPTTVQGIRFKAKTESWESRKKEGSKGFEYHLGSLP-PITQAHL 59 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQE 106 A NT A R P ++ ++ + +Q+ Sbjct: 60 RQQAVKNTTSREVAAARQLIATPASQLVKKTELQQQFLTLPKAKQQ 105 >UniRef50_Q58ZE0 CI repressor-like protein n=5 Tax=Haemophilus influenzae RepID=Q58ZE0_HAEIN Length = 166 Score = 50.2 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%) Query: 1 MKRLRNKMTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58 MK + +LA ++ V R +++GW + G+KGG Sbjct: 1 MKSKKEWYLPRDLAGLGDLSPFPSNVTRKAKQEGWIKREAKGIKGGGFEYHYSSLPP--- 57 Query: 59 IQNTPAFHNTPMLMEAEERIAE 80 A P + E A Sbjct: 58 -AVQQALGFKPNEAKKEPLPAA 78 >UniRef50_D2YK71 Transposase, putative n=1 Tax=Vibrio mimicus VM573 RepID=D2YK71_VIBMI Length = 748 Score = 47.9 bits (112), Expect = 9e-05, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 22/131 (16%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 + T+ ELA G+ + V ++ W+ KG E+ Sbjct: 1 MNKEWYTSTELAGLPGLPSTDRNVRIKAEKENWEKRPREIGKG------------FEYHI 48 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFL-SREGIRN 119 + L + ++ + + EQ K L + +G Sbjct: 49 RSFPMETIAHL-------SRDFLQQKSEGELAAEKLVAELAAKEQAKKRHVLNASQGAMR 101 Query: 120 FLARLDIDESA 130 L L ++ A Sbjct: 102 LLNTLKAEDRA 112 >UniRef50_B8GS44 Transposase A n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GS44_THISH Length = 671 Score = 47.9 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 22/94 (23%), Gaps = 5/94 (5%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE--F 58 R + + LA G+ +Q V + GW K G KGG + Sbjct: 4 REEQWFSAKALAGLPGMPGTQQNVTAKAKRDGWACRKRSG-KGGGREYAFSSLPIATQAA 62 Query: 59 IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQ 92 + E + Sbjct: 63 LLKAAEPAARAARAAQGEPAGAPGEYDAEALWAW 96 >UniRef50_A6W3I3 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3I3_MARMS Length = 216 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 11/133 (8%) Query: 3 RLRNKMTTEELAECLGVAKQTVN--RWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 + T ELA G+ N R + + W+ + G++G + Q Sbjct: 1 MTKEWFTAAELAGQKGMPAHATNVTRKAKSQNWEYRQITGLRGVNFEYHASSLP--QETQ 58 Query: 61 NTPAFHNTPMLMEAEERIAEYAP----GARAPAYRQIINAIDNMTDIEQEKVAQFLSREG 116 ++AE + A+A + + + + + + LS + Sbjct: 59 EALGLEGVSKPVQAENNDSNMVTIQIYSAKAKTWNKAKPETHMVLP--KGYLPKSLSEQE 116 Query: 117 IRNFLARLDIDES 129 + N A L+ +S Sbjct: 117 LNNLFA-LEAPDS 128 >UniRef50_A6D441 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D441_9VIBR Length = 230 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 13/72 (18%) Query: 4 LRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61 ++ EL + G+ + + + + GWK+ K G ++ E+ + Sbjct: 1 MKEWFLASELMDLPGMPSSNSGIAQKAKRDGWKSRKTRG-----------QSRALEYHIS 49 Query: 62 TPAFHNTPMLME 73 + + L E Sbjct: 50 SFDERDLAELRE 61 >UniRef50_Q0T6N1 Putative repressor protein n=3 Tax=Shigella flexneri RepID=Q0T6N1_SHIF8 Length = 169 Score = 46.8 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 12/128 (9%) Query: 2 KRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFI 59 + MT +++ E G+ Q V++ +++GW G +G E+I Sbjct: 5 NEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRG----------PGVEYI 54 Query: 60 QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119 PA + + + ++ ++ NM + Q + Sbjct: 55 PAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDT 114 Query: 120 FLARLDID 127 LA L ID Sbjct: 115 LLATLGID 122 >UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U3A5_YERKR Length = 73 Score = 46.8 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 13/85 (15%) Query: 40 GVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDN 99 G++G E+ ++ + + + E + + INA Sbjct: 2 GIQGKGI----------EYFIDSLPDNVSTYIYHHSELFERISIQEHFDIW---INAFKQ 48 Query: 100 MTDIEQEKVAQFLSREGIRNFLARL 124 +T E+ K ++++ REGI + L Sbjct: 49 LTPSERYKFSEYILREGIISIYKNL 73 >UniRef50_Q2LQD6 Transposase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQD6_SYNAS Length = 754 Score = 46.8 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 10/120 (8%) Query: 5 RNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPA 64 +++ + +ELA +G++ Q + + ++GW E G G R V + Sbjct: 10 KDRFSAKELAVIMGISWQAIQKRADQEGWPCEMETGRGGKRKLFRRAVLPVDWQARIARQ 69 Query: 65 FHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARL 124 A E +P A + + D+E+EK + L +E ARL Sbjct: 70 RAAQAAAAIAPE----------SPEMAGYRAARNYLEDLEREKEEKRLIKERGLVEFARL 119 >UniRef50_A9D2T9 Transposase, putative n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D2T9_9RHIZ Length = 647 Score = 46.8 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 7/76 (9%) Query: 4 LRNKMTTEELAECLGVAKQTVNRWIREKGWKT-----EKFPGVKGGRARLILVDTQVCEF 58 +R T +E+A+ GV+++ +N+ R+ W+ K G GG V Sbjct: 1 MRQFFTPKEIADAAGVSERAINQMARKSHWRHQDQKARKRAGRGGG--WEYHVSLFPQAA 58 Query: 59 IQNTPAFHNTPMLMEA 74 H P Sbjct: 59 QARLMVIHGAPANANR 74 >UniRef50_P07636 Transposase n=8 Tax=root RepID=TRA_BPMU Length = 663 Score = 46.4 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 10/105 (9%) Query: 7 KMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF----IQ 60 ++ +E A G+ V +++GW+ GVKGG+A ++ E + Sbjct: 4 WVSPKECANLPGLPKTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAALLL 63 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQ 105 + E E R + + DN +D ++ Sbjct: 64 RQGEIETSLGYFEIARPTLEAHDYDREALWSKW----DNASDSQR 104 >UniRef50_A1RM55 Integrase, catalytic region n=1 Tax=Shewanella sp. W3-18-1 RepID=A1RM55_SHESW Length = 727 Score = 46.0 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 14/113 (12%) Query: 3 RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 L +T +EL + + + V R + +GW K G GG E+ Sbjct: 1 MLDIWLTAKELEDFPELPKTESGVIRRAKREGWICRKREGRGGG-----------FEYHL 49 Query: 61 NTPAFHNTPM-LMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFL 112 N+ L E + + + N + E+ +F+ Sbjct: 50 NSLPLAAQQHILSEKTKAQIAKKTEQAKTLHEKFSGEKKNASKDEKTAALRFM 102 >UniRef50_B7UXK6 Transposase A n=6 Tax=root RepID=B7UXK6_PSEA8 Length = 689 Score = 45.6 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 14/106 (13%) Query: 6 NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTP 63 + +ELA GV + V K W + G T+ E+ + Sbjct: 3 EWFSAQELAGLPGVPGTARNVKAMAERKSWSGRRRVG------------TKAIEYHVSAL 50 Query: 64 AFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVA 109 L+ A + + + ++ V Sbjct: 51 PKETRAALLNAALGEVATKAVRQETQLALVETNRQQLVADARQGVL 96 >UniRef50_A7JUV9 Possible transposase n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JUV9_PASHA Length = 176 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 8/129 (6%) Query: 2 KRLRNKMTTEELAE----CLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE 57 L+ + +ELAE CL KQ V +++GW T K GV G L + + Sbjct: 4 NSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKKVGVGGEILEFALSNLP--Q 61 Query: 58 FIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGI 117 IQ ++EA+ + + + D VA L EG Sbjct: 62 EIQTEIRSRFMSAVVEAKPKKLPAV--RAEVDVGNLTTKQREIADARMALVAYVLELEGS 119 Query: 118 RNFLARLDI 126 + + + Sbjct: 120 MSRIKAITY 128 >UniRef50_A7JV32 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JV32_PASHA Length = 225 Score = 43.7 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%) Query: 5 RNKMTTEELAECLGVAKQTVN--RWIREKGWKTEKFPGVKGGRARLILVDTQV 55 + T E+A + +Q N R + W + G +G + Sbjct: 7 KEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEGKRGVAFEYHYSSLPI 59 >UniRef50_Q2W6I7 Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W6I7_MAGSA Length = 193 Score = 43.3 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 2 KRLRNKMTTEEL--AECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE 57 +R++ T EL G+ +K V R RE+GW TEK P G R Sbjct: 41 RRIKEWFTAAELVALRLPGLPTSKAAVTRIAREQGWTTEKVPCQGGERHAYHFTSLPRRA 100 Query: 58 F 58 F Sbjct: 101 F 101 >UniRef50_B0US86 Transposase-like Mu n=20 Tax=Pasteurellaceae RepID=B0US86_HAES2 Length = 662 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 13/135 (9%) Query: 1 MKRLRNKMTTEELAE----CLGVAKQTVNRWIREKGWKTEKFPGVKGGRAR-LILVDTQV 55 M L+ + +EL L K+ V + + W++ K G GG L + +V Sbjct: 1 MCELKPYYSAQELIGLQLVILPTTKKAVIDKAKRENWQSRKRVGRGGGVEYALSSLPQEV 60 Query: 56 CEFIQNTPAFHNTP--------MLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEK 107 E I++ A + E + E A + + + K Sbjct: 61 QEEIRDKFATSVVAGKPKKLPVLKSVVLEDLTEKQRQAADARMTLVAYILQLEQAQPRYK 120 Query: 108 VAQFLSREGIRNFLA 122 +F ++ +N L+ Sbjct: 121 AVKFFCQQAKQNLLS 135 >UniRef50_B6IMZ2 Mu transposase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IMZ2_RHOCS Length = 191 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%) Query: 3 RLRNKMTTEELAEC--LGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58 R+R + ELA G+ K + R R + W+ + G G R + F Sbjct: 39 RVREWFSAAELAGVRLPGLPATKAGITRLARAEAWRVREVHGRGGIRFEYHVTSLPPRAF 98 >UniRef50_A4JDI5 MuA-transposase/repressor protein CI, DNA-binding n=2 Tax=root RepID=A4JDI5_BURVG Length = 726 Score = 42.5 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 17/124 (13%) Query: 5 RNKMTTEELA--ECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60 ++ T ELA GV +Q V + W + KG L E Sbjct: 6 KSHYTAPELAMLGLPGVPTTEQGVRYSATREKWAARRR--AKGKGLEYALDSLPA-EAQA 62 Query: 61 NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120 + ++ + A+ Q++ TD ++ + R+GI + Sbjct: 63 AIRHRASAALVTSVPAQPAKAVIRREQQL--QLVE-----TDAQRLRADA---RKGILSI 112 Query: 121 LARL 124 L R+ Sbjct: 113 LDRI 116 >UniRef50_Q9CNL1 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CNL1_PASMU Length = 216 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 13/74 (17%) Query: 20 AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQV-------------CEFIQNTPAFH 66 + + + + +GW+ + GVKG + N P H Sbjct: 10 SDKGIVKKAAREGWQKRQRQGVKGKTFEYHYTSFPIAVQQQLGLYQAEQPHSQVNEPRRH 69 Query: 67 NTPMLMEAEERIAE 80 T + E E Sbjct: 70 YTTEVSSIENTQTE 83 >UniRef50_Q125Z1 Integrase, catalytic region n=1 Tax=Polaromonas sp. JS666 RepID=Q125Z1_POLSJ Length = 772 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%) Query: 5 RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62 ++ +T EL + K+ V+R GW+ + G G R + + Sbjct: 6 KDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATT--RAA 63 Query: 63 PAFHNTPMLM 72 ++H T +L Sbjct: 64 LSWHTTAVLA 73 >UniRef50_Q38452 Transposase (Fragment) n=1 Tax=Pseudomonas phage D3112 RepID=Q38452_BPD31 Length = 48 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%) Query: 6 NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLI 49 +LA G+ + V + +GWK +K G GG + Sbjct: 3 EWFMPTKLAGLPGLPTTDRGVRKLAEREGWKKQKHSGRGGGYEYHV 48 >UniRef50_B6ISS2 Phage transposase protein A, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISS2_RHOCS Length = 710 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 5/105 (4%) Query: 4 LRNKMTTEELAEC----LGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFI 59 +++ T ELA+ + ++ + GW++ + GGR L + Sbjct: 1 MKDWFTAAELADLQLPAIASTERGIRGQATRGGWESRQRAARGGGR-EYPLSALPEEARL 59 Query: 60 QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIE 104 + E + G ++ ++E Sbjct: 60 ELARRAAAEAGDYEKPTPPKRKSVGPAPQNVNVATMPEKHLAEME 104 >UniRef50_C5S4Q8 Putative phage transposase n=1 Tax=Actinobacillus minor NM305 RepID=C5S4Q8_9PAST Length = 663 Score = 41.0 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 12/68 (17%) Query: 6 NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTP 63 + +LA G+ + Q VN+ R++ W+ + + I + E+ ++ Sbjct: 3 EWFSASDLAGVKGMPSSPQGVNKKARQELWQ----------KQQQIGKQGKAFEYHISSL 52 Query: 64 AFHNTPML 71 L Sbjct: 53 PPETQQAL 60 >UniRef50_B8FGN6 Mu transposase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGN6_DESAA Length = 653 Score = 40.6 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%) Query: 3 RLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVC 56 + T +E+A+ +G+ +++V R ++GW G + + Sbjct: 1 MEKRTWTAQEIAKAIGLNERSVQRRANKEGWLYVAIKCRGGRKKVFAHSGLPIP 54 >UniRef50_A3VYG1 Transposase, putative n=5 Tax=Rhodobacteraceae RepID=A3VYG1_9RHOB Length = 707 Score = 38.7 bits (88), Expect = 0.057, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 12/136 (8%) Query: 5 RNKMTTEELAECLGV-----AKQTVNRWIREKGWKT-----EKFPGVKGGRARLILVDTQ 54 + + +LAE G+ K+ +N +GW + G GG Sbjct: 8 QEWWSAADLAE-AGLPDLPGTKRKINLLAEREGWARHAGKVRRRKGA-GGGVEYHWSLLP 65 Query: 55 VCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSR 114 + ++ + N+P ++ E A A + ++ + ++E A Sbjct: 66 IRARMRLSADLVNSPAARPGKDEAWERYAAAGDKARTEAEARLEAIAEVELLVGAGLTRS 125 Query: 115 EGIRNFLARLDIDESA 130 +R +L E + Sbjct: 126 AAVREVARKLGRSEKS 141 >UniRef50_P06019 Repressor protein CI n=3 Tax=root RepID=RPC1_BPMU Length = 174 Score = 38.3 bits (87), Expect = 0.070, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 5/88 (5%) Query: 23 TVNRWIREKGWKTEKFPGVKGGRARLILV---DTQVCEFIQNTPAFHNTPMLMEAEERIA 79 V+ +GW +K GVKGG+A V T+ E + +A E+ Sbjct: 12 GVHYRANVQGWTKQKKEGVKGGKAVEYDVMSMPTKEREQVIAHLGLSTPDTGAQANEKQD 71 Query: 80 EYAPGARAPAYRQIINAIDNMTDIEQEK 107 +IN I+ + E K Sbjct: 72 SSEL--INKLTTTLINMIEELEPDEARK 97 >UniRef50_O05069 Mu-like prophage FluMu transposase A n=5 Tax=Pasteurellaceae RepID=TRA_HAEIN Length = 687 Score = 38.3 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 8/112 (7%) Query: 2 KRLRNKMTTEELAEC----LGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE 57 + L+ + ELA L A + + + + WK++K G GG L + Sbjct: 4 QSLKTHYSVYELANLKLKTLPSAPKNIWEQAKRENWKSQKRQGR-GGGLEYELASLPI-- 60 Query: 58 FIQNTPAFHNTPMLMEAEERIAEYA-PGARAPAYRQIINAIDNMTDIEQEKV 108 +QN TP + E P A ++ A + + K+ Sbjct: 61 EVQNELLLKTTPEQTAVALQKIEETRPLASNEVWQLWDEASAKAQEQAKIKL 112 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.304 0.120 0.299 Lambda K H 0.267 0.0378 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 556,677,178 Number of Sequences: 3077464 Number of extensions: 15895428 Number of successful extensions: 67337 Number of sequences better than 1.0e-01: 63 Number of HSP's better than 0.1 without gapping: 37 Number of HSP's successfully gapped in prelim test: 50 Number of HSP's that attempted gapping in prelim test: 67238 Number of HSP's gapped (non-prelim): 91 length of query: 130 length of database: 1,040,396,356 effective HSP length: 95 effective length of query: 35 effective length of database: 748,037,276 effective search space: 26181304660 effective search space used: 26181304660 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 87 (38.2 bits)