Phyre 2 alignment of P27238 with d1rz4a1

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Job Description | P27238
Confidence | 21.78% | Date | Thu Jan 5 11:43:18 GMT 2012
Rank | 116 | Aligned Residues | 22
% Identity | 36% | Template | d1rz4a1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
Resolution | 2.10

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 13 | . | . | . | . | . |  | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | .
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Query Sequence |  | L | A | E | C | L | G | . | V | A | K | Q | T | V | N | R | W | I | R | E | K | G | W | K
Query Conservation |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | L | A | E | X | L | G | D | L | S | D | S | Q | L | K | V | W | X | S | K | Y | G | W | S
Template Known Secondary structure |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 158 | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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