Phyre 2 alignment of P27238 with d1ku7a_

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Job Description | P27238
Confidence | 23.11% | Date | Thu Jan 5 11:43:18 GMT 2012
Rank | 106 | Aligned Residues | 23
% Identity | 22% | Template | d1ku7a_
SCOP info | DNA/RNA-binding 3-helical bundle | Sigma3 and sigma4 domains of RNA polymerase sigma factors | Sigma4 domain
Resolution | 2.40

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | M | T | T | E | E | L | A | E | C | L | G | V | A | K | Q | T | V | N | R | W | I | R | E
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Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | H | T | L | E | E | V | G | A | Y | F | G | V | T | R | E | R | I | R | Q | I | E | N | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 396 | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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