12/01/2012 08:20:19 : INFO  : Run start: Thu Jan 12 08:20:18 GMT 2012
12/01/2012 08:20:21 : INFO  : Initialised job
12/01/2012 08:20:22 : INFO  : Renaming log file 'phyre2_20120112_082018.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/35da3b45ff9beab0/phyre_20120112_082018.log'
12/01/2012 08:20:23 : INFO  : Initialised job:
Sequence
>batch____
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ
NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF
LARLDIDESA

12/01/2012 08:20:23 : INFO  : Checked sequence
12/01/2012 08:20:25 : INFO  : Finding homologues with PSI-BLAST
12/01/2012 08:20:25 : INFO  : PSI-BLAST 3 iterations
12/01/2012 08:21:11 : INFO  : PSI-BLAST 5 iterations
12/01/2012 08:21:55 : INFO  : Finished PSI-BLAST
12/01/2012 08:21:56 : INFO  : Running Buildali to generate a3m file
12/01/2012 08:24:44 : INFO  : Converting to HMM
12/01/2012 08:24:45 : INFO  : Calibrating HMM
12/01/2012 08:24:51 : INFO  : Searching HMM database
12/01/2012 08:28:16 : INFO  : Finished buildali
12/01/2012 08:28:16 : INFO  : Predicting secondary structure
12/01/2012 08:28:20 : INFO  : Predicted secondary structure (PSI-Pred)
12/01/2012 08:28:21 : INFO  : Predicting Disordered regions
12/01/2012 08:28:23 : INFO  : Predicted Disorder (Disopred)
12/01/2012 08:28:24 : INFO  : Running memsat_svm check
12/01/2012 08:30:09 : INFO  : Globular protein
12/01/2012 08:30:09 : INFO  : Predicted Transmembrane (memsat_svm) ID '35da3b45ff9beab0'
12/01/2012 08:30:10 : INFO  : Initialising fold library search
12/01/2012 08:30:12 : INFO  : Initialised search input
12/01/2012 08:30:13 : INFO  : Building Ensemble models
12/01/2012 08:30:15 : INFO  : Building hh.d1tnsa_.model.1.pdb
12/01/2012 08:30:23 : INFO  : Building hh.d1qpma_.model.2.pdb
12/01/2012 08:30:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35da3b45ff9beab0/hh.d1qpma_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35da3b45ff9beab0/d1qpma_.2.pdb
12/01/2012 08:30:31 : INFO  : Building hh.c3bpxB_.model.3.pdb
12/01/2012 08:30:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35da3b45ff9beab0/hh.c3bpxB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35da3b45ff9beab0/c3bpxB_.3.pdb
12/01/2012 08:30:39 : INFO  : Building hh.c3cjnA_.model.4.pdb
12/01/2012 08:30:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35da3b45ff9beab0/hh.c3cjnA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35da3b45ff9beab0/c3cjnA_.5.pdb
12/01/2012 08:30:47 : INFO  : Building d1tnsa_.1.pdb
12/01/2012 08:30:55 : INFO  : Building d1qpma_.2.pdb
12/01/2012 08:31:02 : INFO  : Building c3bpxB_.3.pdb
12/01/2012 08:31:09 : INFO  : Building c2nnnB_.4.pdb
12/01/2012 08:31:18 : INFO  : Building c3cjnA_.5.pdb
12/01/2012 08:31:25 : INFO  : Building d3broa1.6.pdb
12/01/2012 08:31:32 : INFO  : Building c3k0lA_.7.pdb
12/01/2012 08:31:39 : INFO  : Building d2etha1.8.pdb
12/01/2012 08:31:47 : INFO  : Building d1lj9a_.9.pdb
12/01/2012 08:31:54 : INFO  : Building c3bjaA_.10.pdb
12/01/2012 08:32:01 : INFO  : Building c2qwwB_.11.pdb
12/01/2012 08:32:09 : INFO  : Building d1ub9a_.12.pdb
12/01/2012 08:32:16 : INFO  : Building c3nqoB_.13.pdb
12/01/2012 08:32:22 : INFO  : Building c2rdpA_.14.pdb
12/01/2012 08:32:29 : INFO  : Building c3ctaA_.15.pdb
12/01/2012 08:32:35 : INFO  : Building c3bj6B_.16.pdb
12/01/2012 08:32:41 : INFO  : Building c2nyxB_.17.pdb
12/01/2012 08:32:47 : INFO  : Building c3bddD_.18.pdb
12/01/2012 08:32:53 : INFO  : Building d3ctaa1.19.pdb
12/01/2012 08:32:59 : INFO  : Building d2fbka1.20.pdb
12/01/2012 08:33:31 : INFO  : Finished HH model building
12/01/2012 08:33:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
12/01/2012 08:34:11 : INFO  : html domain output complete ID '35da3b45ff9beab0'
12/01/2012 08:44:11 : INFO  : Run end  : Thu Jan 12 08:44:11 GMT 2012
