BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (130 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact...   270   1e-71
UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter...   119   2e-26
UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac...    84   2e-15
UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba...    56   3e-07
UniRef50_C5SBF9 Response regulator receiver protein n=1 Tax=Allo...    43   0.003
UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent...    41   0.014
UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis...    40   0.023
UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati...    39   0.075

>UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae
           RepID=YFED_ECOLI
          Length = 130

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ
Sbjct: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF
Sbjct: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120

Query: 121 LARLDIDESA 130
           LARLDIDESA
Sbjct: 121 LARLDIDESA 130


>UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae
           RepID=C4XBN9_KLEPN
          Length = 130

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 86/131 (65%), Gaps = 10/131 (7%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           M +L++KMT  ELA+CLG+A+QT+NRW+REK W+TE  PGVKGGRARL+++D  V EF+ 
Sbjct: 1   MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLT 60

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARA-----PAYRQIINAIDNMTDIEQEKVAQFLSRE 115
           N PA  +    +  +  +AE +PGA         +RQI   +  MT  EQ ++   L+RE
Sbjct: 61  NIPARRH----LLTDNHLAE-SPGAYLVNEADAIWRQITETLQLMTPAEQLQLRDLLARE 115

Query: 116 GIRNFLARLDI 126
           GI  FLARL I
Sbjct: 116 GISGFLARLGI 126


>UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae
           RepID=YFEC_ECOL6
          Length = 114

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 8   MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67
           MT +ELA   G ++QT+N+W+R++GW T   PGV+GG+ARL+ V+ QV E+I+N      
Sbjct: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55

Query: 68  TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126
                E  E   E  A    AP    ++     MT +EQ++    L REGI   L RL I
Sbjct: 56  -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110

Query: 127 DES 129
            +S
Sbjct: 111 RDS 113


>UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MKV6_ENTS8
          Length = 129

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           M +    MT  EL E  G   Q ++RW R+ GWK     G KGG A LIL+  QV ++  
Sbjct: 1   MNQFTRWMTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFL 59

Query: 61  NTPAFHNTPMLME-AEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119
            T     +  L    EE  A Y          Q I  ++ ++  EQ ++++ +S EG   
Sbjct: 60  ATDKLRYSAHLYNRIEETPAPYVTWDN-EMMAQFIRTLEMLSPQEQARLSELISEEGAAG 118

Query: 120 FLARLDI 126
            + RL +
Sbjct: 119 LVKRLGL 125


>UniRef50_C5SBF9 Response regulator receiver protein n=1 Tax=Allochromatium
          vinosum DSM 180 RepID=C5SBF9_CHRVI
          Length = 220

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 1  MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLI----LVDTQVC 56
          MK++R+ +TT E+A+  GV  +TV RWI +      K PG    R RLI     +D    
Sbjct: 1  MKQMRS-LTTGEIADYCGVNLRTVIRWIEKGHLPAYKLPGRGNNRVRLIDFLSFIDRHGM 59

Query: 57 EFIQNTPAFHNTPMLMEAEERIAE 80
             +    + N  +++E + R+AE
Sbjct: 60 PLPEALHGYGNRVLVVEDDRRMAE 83


>UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae
           RepID=C4K715_HAMD5
          Length = 115

 Score = 40.8 bits (94), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 20/125 (16%)

Query: 8   MTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF-IQNTPA 64
            + +EL    G+  + Q +N+  R +GWK  +  GV+G          +  E+ I + P 
Sbjct: 6   FSAKELIHSPGLPSSTQGINQMARRQGWKHRRRLGVQG----------KALEYHIDSLP- 54

Query: 65  FHNTPML--MEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122
               P+L  +  +E   +Y+   + P +   I A   +TD E+EK+  FL REGI+  + 
Sbjct: 55  ---KPILKQLRLKEDAEKYSLNQQDP-FTIWIEAYRQLTDSEREKLIAFLFREGIQGLIK 110

Query: 123 RLDID 127
           RL  D
Sbjct: 111 RLSND 115


>UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NW40_SODGM
          Length = 127

 Score = 40.0 bits (92), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 18/122 (14%)

Query: 8   MTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAF 65
           + T EL    G+ K  Q +NR  RE+GW+  +  G +G           + + ++ T + 
Sbjct: 8   IATHELIGVGGLPKTRQGLNRRAREEGWQKRRREGARGKAVEYSW--HSLPDMVKKTLSL 65

Query: 66  HNTPMLMEAEERIAEY--APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLAR 123
              P         AEY  +P   +  + +I      ++D E++ +  F+ REG+ N L R
Sbjct: 66  RTNP---------AEYQLSPQETSATWNEIYR---QLSDAERDFIVSFIVREGVLNLLKR 113

Query: 124 LD 125
           LD
Sbjct: 114 LD 115


>UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans
           568 RepID=A8G8Y9_SERP5
          Length = 90

 Score = 38.5 bits (88), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 14/101 (13%)

Query: 29  REKGWKTEKFPGVKGGRARLILVDTQVCEF-IQNTPAFHNTPMLMEAEERIAEYAPGARA 87
           R +GW + +  GV+G          +  E+ I + PA   T  L+  +E  A Y    + 
Sbjct: 3   RREGWNSRRRKGVQG----------KALEYHIDSLPA--GTRNLLVLKEEPASYQVERKD 50

Query: 88  PAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDE 128
           P     I    ++T+ E+EKV  FL REGI + LAR+  D+
Sbjct: 51  PLV-VWIEYYYHLTECEREKVLAFLIREGIGSLLARISADK 90


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact...   197   9e-50
UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba...   166   1e-40
UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter...   165   3e-40
UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac...   149   2e-35

Sequences not found previously or not previously below threshold:

UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding...    54   2e-06
UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent...    51   1e-05
UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding...    50   3e-05
UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=...    48   7e-05
UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding...    48   8e-05
UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis...    47   2e-04
UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding...    46   4e-04
UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding...    44   0.002
UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-bindin...    42   0.007
UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati...    41   0.012

>UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae
           RepID=YFED_ECOLI
          Length = 130

 Score =  197 bits (501), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ
Sbjct: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF
Sbjct: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120

Query: 121 LARLDIDESA 130
           LARLDIDESA
Sbjct: 121 LARLDIDESA 130


>UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MKV6_ENTS8
          Length = 129

 Score =  166 bits (421), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           M +    MT  EL E  G   Q ++RW R+ GWK     G KGG A LIL+  QV ++  
Sbjct: 1   MNQFTRWMTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFL 59

Query: 61  NTPAFHNTPMLMEA-EERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119
            T     +  L    EE  A Y          Q I  ++ ++  EQ ++++ +S EG   
Sbjct: 60  ATDKLRYSAHLYNRIEETPAPYVTWDN-EMMAQFIRTLEMLSPQEQARLSELISEEGAAG 118

Query: 120 FLARLDIDE 128
            + RL + +
Sbjct: 119 LVKRLGLRD 127


>UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae
           RepID=C4XBN9_KLEPN
          Length = 130

 Score =  165 bits (418), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/126 (47%), Positives = 79/126 (62%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           M +L++KMT  ELA+CLG+A+QT+NRW+REK W+TE  PGVKGGRARL+++D  V EF+ 
Sbjct: 1   MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLT 60

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           N PA  +        E    Y        +RQI   +  MT  EQ ++   L+REGI  F
Sbjct: 61  NIPARRHLLTDNHLAESPGAYLVNEADAIWRQITETLQLMTPAEQLQLRDLLAREGISGF 120

Query: 121 LARLDI 126
           LARL I
Sbjct: 121 LARLGI 126


>UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae
           RepID=YFEC_ECOL6
          Length = 114

 Score =  149 bits (376), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 8   MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67
           MT +ELA   G ++QT+N+W+R++GW T   PGV+GG+ARL+ V+ QV E+I+N      
Sbjct: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55

Query: 68  TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126
                E  E   E  A    AP    ++     MT +EQ++    L REGI   L RL I
Sbjct: 56  -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110

Query: 127 DES 129
            +S
Sbjct: 111 RDS 113


>UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding n=2
           Tax=Edwardsiella RepID=C5B7F4_EDWI9
          Length = 114

 Score = 53.7 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 14/123 (11%)

Query: 5   RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
           +   + +ELA   G     Q +N+  + +GW+ ++  GV+G          +  E+  + 
Sbjct: 3   KEWYSAKELAGIGGFPSTPQAINQRAKSEGWRRQRRSGVQG----------KAVEYHISC 52

Query: 63  PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122
                   L+  +E  A+Y   +  P        +  M++ E++KV   + R GI  FL 
Sbjct: 53  FPPEVVDELLARDE-QAQYLISSNQPEKVWYSILLQ-MSEEERKKVTSLILRIGINEFLR 110

Query: 123 RLD 125
           RL 
Sbjct: 111 RLG 113


>UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae
           RepID=C4K715_HAMD5
          Length = 115

 Score = 50.6 bits (119), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 5   RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
           +   + +EL    G+  + Q +N+  R +GWK  +  GV+G +A    +D+ + + I   
Sbjct: 3   KEWFSAKELIHSPGLPSSTQGINQMARRQGWKHRRRLGVQG-KALEYHIDS-LPKPILKQ 60

Query: 63  PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122
                         +   +            I A   +TD E+EK+  FL REGI+  + 
Sbjct: 61  LRLKEDAEKYSL-NQQDPFTIW---------IEAYRQLTDSEREKLIAFLFREGIQGLIK 110

Query: 123 RLDID 127
           RL  D
Sbjct: 111 RLSND 115


>UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding protein n=6
           Tax=Enterobacteriaceae RepID=D2BRS4_DICD5
          Length = 140

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 5   RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLIL--VDTQVCEFIQ 60
           +   TT EL    G+  ++Q +N+  ++ GW+  +  GV+G      +  +  +V   + 
Sbjct: 3   KTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLPEEVKATLM 62

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
                  T M   A + ++  + GA+   + QI      ++  E+ ++   + REG  + 
Sbjct: 63  RATLMGTTLMRETAPDYVSAASAGAQEYTWIQI---YHQLSAEERTRLIGHILREGAMSV 119

Query: 121 LARL 124
           LARL
Sbjct: 120 LARL 123


>UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=B8DLF1_DESVM
          Length = 728

 Score = 48.3 bits (113), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 1  MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
          MK  ++  T  ELA  LGV  + V    R +GW+  + PG  GG   L+ V       + 
Sbjct: 1  MKTFKDAYTAGELAAALGVTDRAVQMRARREGWQARRKPGRGGGNEWLV-VSMPEGTALA 59

Query: 61 NTPAFHNTPMLMEAEERI----AEYAPGARAPA 89
             A   T +   A +      A  APGA  P 
Sbjct: 60 VRMAEERTAVAAAASDHPPTTSAPSAPGAPTPL 92


>UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding n=31
           Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY
          Length = 115

 Score = 48.3 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 5   RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
           +     +ELA   G+  + Q +N   + +GW+  +  GV+G          +  E+   +
Sbjct: 3   KEWFAAKELAGLEGLPSSPQGINLMAKREGWEQRRRRGVQG----------KAVEYHIGS 52

Query: 63  PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122
                   L   EE  A+YA   + P     + A    T+ E+E+V  F+ REG ++ + 
Sbjct: 53  LPITILNSLQLREE-PAQYATTRQDPL-TLWVEAYYRFTEAEREQVISFIFREGAKSLIE 110

Query: 123 RLDID 127
           RL++D
Sbjct: 111 RLEMD 115


>UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NW40_SODGM
          Length = 127

 Score = 46.7 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 5   RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
           +  + T EL    G+   +Q +NR  RE+GW+  +  G +G             + ++ T
Sbjct: 5   KEWIATHELIGVGGLPKTRQGLNRRAREEGWQKRRREGARGKAVEYSWHSLP--DMVKKT 62

Query: 63  PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122
            +    P   +        +P   +  + +I      ++D E++ +  F+ REG+ N L 
Sbjct: 63  LSLRTNPAEYQL-------SPQETSATWNEIYR---QLSDAERDFIVSFIVREGVLNLLK 112

Query: 123 RLDIDE 128
           RLD  +
Sbjct: 113 RLDYPD 118


>UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding n=9
           Tax=Enterobacteriaceae RepID=C6CJR2_DICZE
          Length = 136

 Score = 46.0 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 1   MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58
           M   +   TT EL    G+  ++Q +N+  ++ GW+  +  GV+G      +      E 
Sbjct: 5   MMMEKTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLP--EE 62

Query: 59  IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118
           ++ T     +P          + +           I     ++  E+ ++   + REG  
Sbjct: 63  VKTTLMRETSPDYAVVTPTNVQESTW---------IQIYHQLSVEERTRLIGHILREGAM 113

Query: 119 NFLARL 124
             LARL
Sbjct: 114 GMLARL 119


>UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding n=3
           Tax=Enterobacteriaceae RepID=A8GHQ2_SERP5
          Length = 116

 Score = 44.0 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 14/125 (11%)

Query: 6   NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTP 63
                 EL    G+  + Q +N   R +GW + +  GV+G          +  E+  N+ 
Sbjct: 4   EWFAARELTGIAGLPSSPQGINLMARREGWISRRRKGVQG----------KAVEYHINSL 53

Query: 64  AFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLAR 123
                 +L+  E+  AEY    + P     +    ++++ E+EKV  FL REGI + LA 
Sbjct: 54  PIGARSLLVLQED-PAEYQLERQDPL-AVWVEYYYHLSESEREKVLTFLMREGIDSLLAL 111

Query: 124 LDIDE 128
           +  +E
Sbjct: 112 IAAEE 116


>UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-binding n=5
           Tax=Enterobacteriaceae RepID=C2LKG3_PROMI
          Length = 115

 Score = 41.7 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 14/122 (11%)

Query: 5   RNKMTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
           +   T  EL    G+ K  Q VN   + + W  +K    +G           V       
Sbjct: 3   KEWYTAMELTGIGGLPKSPQGVNAKAKRESWLKQKRTNKQGNG---------VEYHYSCL 53

Query: 63  PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLA 122
           P    T + +E  E +A Y      P     + A   + D EQ+ V + + R+GIR+FL 
Sbjct: 54  PE--ETLIALELYEPLAHYKLNKEEPL-VIWVKAFQQLNDGEQKTVTELILRDGIRSFLE 110

Query: 123 RL 124
           ++
Sbjct: 111 KI 112


>UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans
           568 RepID=A8G8Y9_SERP5
          Length = 90

 Score = 40.9 bits (94), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 28  IREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARA 87
            R +GW + +  GV+G +A    +D        + PA   T  L+  +E  A Y    + 
Sbjct: 2   ARREGWNSRRRKGVQG-KALEYHID--------SLPA--GTRNLLVLKEEPASYQVERKD 50

Query: 88  PAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDE 128
           P     I    ++T+ E+EKV  FL REGI + LAR+  D+
Sbjct: 51  PLVV-WIEYYYHLTECEREKVLAFLIREGIGSLLARISADK 90


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact...   157   1e-37
UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter...   144   8e-34
UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba...   128   7e-29
UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding...   124   1e-27
UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding...   120   1e-26
UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac...   119   2e-26
UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis...   114   1e-24
UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent...   112   3e-24
UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding...   109   2e-23
UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding...   109   4e-23
UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding...   108   6e-23
UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=...    88   1e-16

Sequences not found previously or not previously below threshold:

UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-bindin...    83   2e-15
UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati...    81   9e-15
UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Provide...    74   1e-12
UniRef50_C5S4R0 Putative uncharacterized protein n=1 Tax=Actinob...    66   4e-10
UniRef50_Q58ZD8 MuA transposase subunit-like protein n=6 Tax=Hae...    57   2e-07
UniRef50_Q0EWA9 Transposase and inactivated derivative n=1 Tax=M...    56   3e-07
UniRef50_P07040 Repressor protein CI n=3 Tax=root RepID=RPC1_BPD10     56   3e-07
UniRef50_B0UVF4 Putative uncharacterized protein n=1 Tax=Haemoph...    56   4e-07
UniRef50_B6WSU4 Putative uncharacterized protein n=1 Tax=Desulfo...    54   1e-06
UniRef50_A7JV30 Bacteriophage transposase n=1 Tax=Mannheimia hae...    53   2e-06
UniRef50_Q30W02 Bacteriophage transposase A protein, putative n=...    53   3e-06
UniRef50_C0N301 Mu DNA binding, I gamma subdomain family n=5 Tax...    53   3e-06
UniRef50_B8DK74 Transposase-like Mu n=3 Tax=Desulfovibrio vulgar...    52   5e-06
UniRef50_A9L0K4 Integrase catalytic region n=2 Tax=Shewanella ba...    51   1e-05
UniRef50_C4LBA7 Integrase catalytic region n=1 Tax=Tolumonas aue...    51   1e-05
UniRef50_Q8EJ30 Transposase, putative n=1 Tax=Shewanella oneiden...    51   2e-05
UniRef50_Q58ZE0 CI repressor-like protein n=5 Tax=Haemophilus in...    50   2e-05
UniRef50_D2YK71 Transposase, putative n=1 Tax=Vibrio mimicus VM5...    48   9e-05
UniRef50_B8GS44 Transposase A n=1 Tax=Thioalkalivibrio sp. HL-Eb...    48   1e-04
UniRef50_A6W3I3 Putative uncharacterized protein n=1 Tax=Marinom...    47   2e-04
UniRef50_A6D441 Putative uncharacterized protein n=1 Tax=Vibrio ...    47   2e-04
UniRef50_Q0T6N1 Putative repressor protein n=3 Tax=Shigella flex...    47   2e-04
UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersin...    47   2e-04
UniRef50_Q2LQD6 Transposase n=1 Tax=Syntrophus aciditrophicus SB...    47   2e-04
UniRef50_A9D2T9 Transposase, putative n=1 Tax=Hoeflea phototroph...    47   2e-04
UniRef50_P07636 Transposase n=8 Tax=root RepID=TRA_BPMU                46   3e-04
UniRef50_A1RM55 Integrase, catalytic region n=1 Tax=Shewanella s...    46   4e-04
UniRef50_B7UXK6 Transposase A n=6 Tax=root RepID=B7UXK6_PSEA8          46   5e-04
UniRef50_A7JUV9 Possible transposase n=1 Tax=Mannheimia haemolyt...    44   0.001
UniRef50_A7JV32 Possible bacteriophage transcriptional regulator...    44   0.002
UniRef50_Q2W6I7 Putative uncharacterized protein n=1 Tax=Magneto...    43   0.002
UniRef50_B0US86 Transposase-like Mu n=20 Tax=Pasteurellaceae Rep...    43   0.003
UniRef50_B6IMZ2 Mu transposase, putative n=1 Tax=Rhodospirillum ...    43   0.003
UniRef50_A4JDI5 MuA-transposase/repressor protein CI, DNA-bindin...    43   0.005
UniRef50_Q9CNL1 Putative uncharacterized protein n=1 Tax=Pasteur...    42   0.005
UniRef50_Q125Z1 Integrase, catalytic region n=1 Tax=Polaromonas ...    42   0.005
UniRef50_Q38452 Transposase (Fragment) n=1 Tax=Pseudomonas phage...    42   0.006
UniRef50_B6ISS2 Phage transposase protein A, putative n=1 Tax=Rh...    42   0.006
UniRef50_C5S4Q8 Putative phage transposase n=1 Tax=Actinobacillu...    41   0.013
UniRef50_B8FGN6 Mu transposase n=1 Tax=Desulfatibacillum alkeniv...    41   0.016
UniRef50_A3VYG1 Transposase, putative n=5 Tax=Rhodobacteraceae R...    39   0.057
UniRef50_P06019 Repressor protein CI n=3 Tax=root RepID=RPC1_BPMU      38   0.070
UniRef50_O05069 Mu-like prophage FluMu transposase A n=5 Tax=Pas...    38   0.087

>UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae
           RepID=YFED_ECOLI
          Length = 130

 Score =  157 bits (396), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ
Sbjct: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF
Sbjct: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120

Query: 121 LARLDIDESA 130
           LARLDIDESA
Sbjct: 121 LARLDIDESA 130


>UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae
           RepID=C4XBN9_KLEPN
          Length = 130

 Score =  144 bits (363), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 60/126 (47%), Positives = 79/126 (62%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           M +L++KMT  ELA+CLG+A+QT+NRW+REK W+TE  PGVKGGRARL+++D  V EF+ 
Sbjct: 1   MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLT 60

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           N PA  +        E    Y        +RQI   +  MT  EQ ++   L+REGI  F
Sbjct: 61  NIPARRHLLTDNHLAESPGAYLVNEADAIWRQITETLQLMTPAEQLQLRDLLAREGISGF 120

Query: 121 LARLDI 126
           LARL I
Sbjct: 121 LARLGI 126


>UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MKV6_ENTS8
          Length = 129

 Score =  128 bits (320), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           M +    MT  EL E  G   Q ++RW R+ GWK     G KGG A LIL+  QV ++  
Sbjct: 1   MNQFTRWMTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFL 59

Query: 61  NTPAFHNTPMLMEA-EERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119
            T     +  L    EE  A Y          Q I  ++ ++  EQ ++++ +S EG   
Sbjct: 60  ATDKLRYSAHLYNRIEETPAPYVTWDNE-MMAQFIRTLEMLSPQEQARLSELISEEGAAG 118

Query: 120 FLARLDIDE 128
            + RL + +
Sbjct: 119 LVKRLGLRD 127


>UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding protein n=6
           Tax=Enterobacteriaceae RepID=D2BRS4_DICD5
          Length = 140

 Score =  124 bits (310), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQ--VCEF 58
             +   TT EL    G+  ++Q +N+  ++ GW+  +  GV+G      +      V   
Sbjct: 1   MEKTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLPEEVKAT 60

Query: 59  IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118
           +        T M   A + ++  + GA+   + QI      ++  E+ ++   + REG  
Sbjct: 61  LMRATLMGTTLMRETAPDYVSAASAGAQEYTWIQI---YHQLSAEERTRLIGHILREGAM 117

Query: 119 NFLARLDI 126
           + LARL+ 
Sbjct: 118 SVLARLEN 125


>UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding n=9
           Tax=Enterobacteriaceae RepID=C6CJR2_DICZE
          Length = 136

 Score =  120 bits (301), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 1   MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58
           M   +   TT EL    G+  ++Q +N+  ++ GW+  +  GV+G      +      E 
Sbjct: 5   MMMEKTWFTTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLP--EE 62

Query: 59  IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118
           ++ T     +P          + +           I     ++  E+ ++   + REG  
Sbjct: 63  VKTTLMRETSPDYAVVTPTNVQESTW---------IQIYHQLSVEERTRLIGHILREGAM 113

Query: 119 NFLARLDI 126
             LARL+ 
Sbjct: 114 GMLARLEN 121


>UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae
           RepID=YFEC_ECOL6
          Length = 114

 Score =  119 bits (299), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 8   MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67
           MT +ELA   G ++QT+N+W+R++GW T   PGV+GG+ARL+ V+ QV E+I+N      
Sbjct: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55

Query: 68  TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126
                E  E   E  A    AP    ++     MT +EQ++    L REGI   L RL I
Sbjct: 56  -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110

Query: 127 DES 129
            +S
Sbjct: 111 RDS 113


>UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NW40_SODGM
          Length = 127

 Score =  114 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 1   MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58
           M+  +  + T EL    G+   +Q +NR  RE+GW+  +  G +G             + 
Sbjct: 1   MEIKKEWIATHELIGVGGLPKTRQGLNRRAREEGWQKRRREGARGKAVEYSWHSLP--DM 58

Query: 59  IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIR 118
           ++ T +    P   +        +P   +  + +I      ++D E++ +  F+ REG+ 
Sbjct: 59  VKKTLSLRTNPAEYQL-------SPQETSATWNEI---YRQLSDAERDFIVSFIVREGVL 108

Query: 119 NFLARLDIDE 128
           N L RLD  +
Sbjct: 109 NLLKRLDYPD 118


>UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae
           RepID=C4K715_HAMD5
          Length = 115

 Score =  112 bits (280), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
             +   + +EL    G+  + Q +N+  R +GWK  +  GV+G      +      + I 
Sbjct: 1   MDKEWFSAKELIHSPGLPSSTQGINQMARRQGWKHRRRLGVQGKALEYHIDSLP--KPIL 58

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
                           +   +            I A   +TD E+EK+  FL REGI+  
Sbjct: 59  KQLRLKEDAEKYSL-NQQDPFTIW---------IEAYRQLTDSEREKLIAFLFREGIQGL 108

Query: 121 LARLDID 127
           + RL  D
Sbjct: 109 IKRLSND 115


>UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding n=31
           Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY
          Length = 115

 Score =  109 bits (273), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
             +     +ELA   G+  + Q +N   + +GW+  +  GV+G          +  E+  
Sbjct: 1   MKKEWFAAKELAGLEGLPSSPQGINLMAKREGWEQRRRRGVQG----------KAVEYHI 50

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
            +        L   EE  A+YA   + P     + A    T+ E+E+V  F+ REG ++ 
Sbjct: 51  GSLPITILNSLQLREE-PAQYATTRQDPL-TLWVEAYYRFTEAEREQVISFIFREGAKSL 108

Query: 121 LARLDID 127
           + RL++D
Sbjct: 109 IERLEMD 115


>UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding n=3
           Tax=Enterobacteriaceae RepID=A8GHQ2_SERP5
          Length = 116

 Score =  109 bits (271), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 14/128 (10%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
                    EL    G+  + Q +N   R +GW + +  GV+G          +  E+  
Sbjct: 1   MKNEWFAARELTGIAGLPSSPQGINLMARREGWISRRRKGVQG----------KAVEYHI 50

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           N+       +L+  E+  AEY    + P     +    ++++ E+EKV  FL REGI + 
Sbjct: 51  NSLPIGARSLLVLQED-PAEYQLERQDPL-AVWVEYYYHLSESEREKVLTFLMREGIDSL 108

Query: 121 LARLDIDE 128
           LA +  +E
Sbjct: 109 LALIAAEE 116


>UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding n=2
           Tax=Edwardsiella RepID=C5B7F4_EDWI9
          Length = 114

 Score =  108 bits (269), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
             +   + +ELA   G     Q +N+  + +GW+ ++  GV+G          +  E+  
Sbjct: 1   MNKEWYSAKELAGIGGFPSTPQAINQRAKSEGWRRQRRSGVQG----------KAVEYHI 50

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           +         L+  +E  A+Y   +  P        +  M++ E++KV   + R GI  F
Sbjct: 51  SCFPPEVVDELLARDE-QAQYLISSNQPEKVWYSILL-QMSEEERKKVTSLILRIGINEF 108

Query: 121 LARLD 125
           L RL 
Sbjct: 109 LRRLG 113


>UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=B8DLF1_DESVM
          Length = 728

 Score = 87.6 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 1  MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
          MK  ++  T  ELA  LGV  + V    R +GW+  + PG  GG   L+ V       + 
Sbjct: 1  MKTFKDAYTAGELAAALGVTDRAVQMRARREGWQARRKPGRGGGNEWLV-VSMPEGTALA 59

Query: 61 NTPAFHNTPMLMEAEERI----AEYAPGARAPA 89
             A   T +   A +      A  APGA  P 
Sbjct: 60 VRMAEERTAVAAAASDHPPTTSAPSAPGAPTPL 92


>UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-binding n=5
           Tax=Enterobacteriaceae RepID=C2LKG3_PROMI
          Length = 115

 Score = 83.4 bits (204), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
             +   T  EL    G+  + Q VN   + + W  +K    +G             E+  
Sbjct: 1   MKKEWYTAMELTGIGGLPKSPQGVNAKAKRESWLKQKRTNKQGNGV----------EYHY 50

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           +         L E  E +A Y      P     + A   + D EQ+ V + + R+GIR+F
Sbjct: 51  SCLPEETLIAL-ELYEPLAHYKLNKEEPL-VIWVKAFQQLNDGEQKTVTELILRDGIRSF 108

Query: 121 LARL 124
           L ++
Sbjct: 109 LEKI 112


>UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans
           568 RepID=A8G8Y9_SERP5
          Length = 90

 Score = 81.4 bits (199), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 12/101 (11%)

Query: 27  WIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGAR 86
             R +GW + +  GV+G          +  E+  ++       +L+  EE  A Y    +
Sbjct: 1   MARREGWNSRRRKGVQG----------KALEYHIDSLPAGTRNLLVLKEE-PASYQVERK 49

Query: 87  APAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDID 127
            P     I    ++T+ E+EKV  FL REGI + LAR+  D
Sbjct: 50  DPL-VVWIEYYYHLTECEREKVLAFLIREGIGSLLARISAD 89


>UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Providencia
           RepID=B6XCH8_9ENTR
          Length = 118

 Score = 74.1 bits (180), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 14/121 (11%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
            ++  +T +EL    G+  + Q +N   R + W + K  G++G      +    +     
Sbjct: 1   MIKEWLTAKELVGRQGLPSSTQGINAMARRENWLSRKRRGIQGKALEYHISSIPI----- 55

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
                 +        E    Y       A+     A + ++  E+  V  F+ R+G    
Sbjct: 56  ------DLEEPTVMYEAPRIYHVKRDEHAHI-WQEAYNQLSHDERVAVLSFIMRKGALAL 108

Query: 121 L 121
           +
Sbjct: 109 I 109


>UniRef50_C5S4R0 Putative uncharacterized protein n=1 Tax=Actinobacillus minor
          NM305 RepID=C5S4R0_9PAST
          Length = 179

 Score = 66.0 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 1  MKRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQV 55
          M   +   +  ELA   G+    Q +N+  R + W+     GV+GG           
Sbjct: 1  MGNFKEWFSASELAGIQGLPKTPQGINKRARTQNWQKRNKDGVQGGAVEYHYTSFPE 57


>UniRef50_Q58ZD8 MuA transposase subunit-like protein n=6 Tax=Haemophilus influenzae
           RepID=Q58ZD8_HAEIN
          Length = 669

 Score = 56.8 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 4   LRNKMTTEELAECLGVA--KQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61
           ++N +T +E+A   G++     VNR  R++ W   +  GV+GG          +   +Q 
Sbjct: 1   MKNWVTAKEIAGIGGLSKHPTNVNRLARKEKWIFREIQGVQGGGYEYSFSSLPL--EVQT 58

Query: 62  TPAFHNTPMLMEAEERIAEYAPGARAPAYRQIIN-AIDNMTDIEQEK 107
                ++  L   +E            A+  + +   +     E+  
Sbjct: 59  EYLLKHSEELKVNKENNDSNQQTMIESAWNVLASATFEQEKRAERRF 105


>UniRef50_Q0EWA9 Transposase and inactivated derivative n=1 Tax=Mariprofundus
           ferrooxydans PV-1 RepID=Q0EWA9_9PROT
          Length = 742

 Score = 56.4 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 8/117 (6%)

Query: 7   KMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE-FIQNTP 63
            M   ELA   G+    + + +    +GW++ K    KG                     
Sbjct: 4   WMPASELAGLPGLPGTDRGIRKLADREGWQSRKRQ--KGKGLEYSPSSLPEVTRTHLAHL 61

Query: 64  AFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
           +       +  +   A+YA     P           M D E  +  + ++R GI  F
Sbjct: 62  SVKAAMDEVSKQPEYAQYA--EAEPVESIPGVKTREMLDEEAAEHRRLIAR-GIAEF 115


>UniRef50_P07040 Repressor protein CI n=3 Tax=root RepID=RPC1_BPD10
          Length = 174

 Score = 56.4 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 1   MKRL--RNKMTTEELAECLGVAKQTVN--RWIREKGWKTEKFPGVKGGRARLILVDTQVC 56
           M     +     +EL    GV K   N  R    + W   +  G KG             
Sbjct: 1   MMSFEIKEWFNAKELEGMPGVPKLATNITRKAVAEDWVKRQRHGGKGV----------AY 50

Query: 57  EFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREG 116
           E+  N+        +  A                 ++I A+  +T  EQ    + +   G
Sbjct: 51  EYHINSLPEETRRAIKGASLSDKPVHTSIVHTVDERLIYAMSFLTPDEQAAAVEIIRVAG 110

Query: 117 IRNFLARLDIDESA 130
           I+  +  +   + A
Sbjct: 111 IKGLMPTIVSKDKA 124


>UniRef50_B0UVF4 Putative uncharacterized protein n=1 Tax=Haemophilus somnus 2336
          RepID=B0UVF4_HAES2
          Length = 145

 Score = 56.0 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 4  LRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61
          ++   T +EL +  G+    Q +  + ++  W+  +  GVKG      + D         
Sbjct: 1  MKEWYTLKELLDVGGLPSTPQGIILYAKKDKWRRRRVSGVKGNVFEYYVYDMPESVQTSL 60

Query: 62 TPAFHNTPMLMEAEE 76
                  +  E  +
Sbjct: 61 GVTKETLALKQELID 75


>UniRef50_B6WSU4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
           29098 RepID=B6WSU4_9DELT
          Length = 697

 Score = 54.5 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 1   MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLI-LVDTQVCEFI 59
           M  +    +T+ELA  LG+  ++V+   + +GW+     G  GG+  ++  +  ++ + +
Sbjct: 1   MNTIATTYSTQELAHYLGITVKSVHIRAKREGWQALPRAGRGGGKLWVVSSMPAEIRDRL 60

Query: 60  QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLS 113
            +        ++   EE  A  + G+   A          ++D E+  V   L+
Sbjct: 61  ASALLRQPAAII---EESAACASIGSNICAPIGTAGNGPALSDRERAIVTARLA 111


>UniRef50_A7JV30 Bacteriophage transposase n=1 Tax=Mannheimia haemolytica PHL213
           RepID=A7JV30_PASHA
          Length = 656

 Score = 53.3 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 4   LRNKMTTEELAECLGVA--KQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61
           ++     +E+A   GV     +V+R   ++GW+  +  GV+G      L        I+ 
Sbjct: 1   MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVTYEYHLTSLP----IET 56

Query: 62  TPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEK 107
                    L    +  AE  P    PA   +I  ++N TD  ++K
Sbjct: 57  QQQLRLNAALAVIPQA-AELQPKRDDPA---LIARLNNATDKGRDK 98


>UniRef50_Q30W02 Bacteriophage transposase A protein, putative n=4
          Tax=Desulfovibrio RepID=Q30W02_DESDG
          Length = 708

 Score = 53.3 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 1  MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLI 49
          M + ++  T +ELA  L V   T+ R    +GW++    G  GG   +I
Sbjct: 1  MAKAKDAYTAKELAIALNVTVMTITRRAEREGWQSRPRAGRGGGNEWII 49


>UniRef50_C0N301 Mu DNA binding, I gamma subdomain family n=5
           Tax=Gammaproteobacteria RepID=C0N301_9GAMM
          Length = 722

 Score = 52.9 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 5   RNKMTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
           R   T  ELA   G+ K  + VN+   ++GW T +     G      L    V    Q  
Sbjct: 6   REWFTATELANKPGLPKYKRGVNQQASKQGWNTRQVKVRGGSANEYHLSSLPVET--QAA 63

Query: 63  PAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFL 112
               + P  +++     E++       ++   N      D  Q K+   L
Sbjct: 64  LIKQHLPTPVKSSSESTEFS-YDPQALWQHYDNKPQKQKDAAQNKLNLLL 112


>UniRef50_B8DK74 Transposase-like Mu n=3 Tax=Desulfovibrio vulgaris
           RepID=B8DK74_DESVM
          Length = 732

 Score = 52.2 bits (123), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 1   MKRLRNKMTTEELAECLGVAKQ-TVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFI 59
           M   +   TT +L   LG++ + TV R    +GW +    G  GG   L+     + +  
Sbjct: 1   MASPKEAYTTRDLLPLLGISSESTVIRRASREGWTSRPRKGRGGGNEWLL---ASMPKST 57

Query: 60  QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTD 102
           +            +  E+     P   A   R+ I A   M+ 
Sbjct: 58  RKALLDGMLRTAAQEAEKNLPALPPLDAADPRRAIAA--RMSP 98


>UniRef50_A9L0K4 Integrase catalytic region n=2 Tax=Shewanella baltica
          RepID=A9L0K4_SHEB9
          Length = 738

 Score = 51.4 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 3  RLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
            +   +T E+AE L V  + V    +++ W+ ++  G+ GG            E+  N+
Sbjct: 1  MTKEWFSTVEIAELLDVGDRRVRDRAKQENWQKQRRQGLGGG-----------FEYHLNS 49

Query: 63 PAFHNTPMLMEAEERIAEYAPGA 85
                  L + E      +P +
Sbjct: 50 LPLEARQKLAKQEAEQIATSPTS 72


>UniRef50_C4LBA7 Integrase catalytic region n=1 Tax=Tolumonas auensis DSM 9187
           RepID=C4LBA7_TOLAT
          Length = 741

 Score = 51.0 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 4   LRNKMTTEELAECLGVAKQ---TVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           ++    + ELA  +G+  Q    V +    + WK  K    KG    +  + ++   ++ 
Sbjct: 1   MKEWFISSELAGLVGL-PQYQDGVRKKADREDWKNRKRESGKGLEYHISSLPSETRAYLA 59

Query: 61  NTPAFHN-TPMLMEAEERIAEYAPGARAPAYRQII----NAIDNMTDIEQEKVAQFLS 113
            T A    + +   A+  +A  A   ++    Q        +  +   ++++    L 
Sbjct: 60  KTMASETASAIQDHAKAGVAMAALADKSAVSVQAKIENGRKLIALKPEQRKRADSRLL 117


>UniRef50_Q8EJ30 Transposase, putative n=1 Tax=Shewanella oneidensis
           RepID=Q8EJ30_SHEON
          Length = 715

 Score = 50.6 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
             +   + +EL +  G+    Q +    + + W++ K  G KG    L  +   + +   
Sbjct: 1   MNKAWFSPQELLQLPGMPTTVQGIRFKAKTESWESRKKEGSKGFEYHLGSLP-PITQAHL 59

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQE 106
              A  NT     A  R     P ++     ++      +   +Q+
Sbjct: 60  RQQAVKNTTSREVAAARQLIATPASQLVKKTELQQQFLTLPKAKQQ 105


>UniRef50_Q58ZE0 CI repressor-like protein n=5 Tax=Haemophilus influenzae
          RepID=Q58ZE0_HAEIN
          Length = 166

 Score = 50.2 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 1  MKRLRNKMTTEELAECLGVAK--QTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58
          MK  +      +LA    ++     V R  +++GW   +  G+KGG              
Sbjct: 1  MKSKKEWYLPRDLAGLGDLSPFPSNVTRKAKQEGWIKREAKGIKGGGFEYHYSSLPP--- 57

Query: 59 IQNTPAFHNTPMLMEAEERIAE 80
               A    P   + E   A 
Sbjct: 58 -AVQQALGFKPNEAKKEPLPAA 78


>UniRef50_D2YK71 Transposase, putative n=1 Tax=Vibrio mimicus VM573
           RepID=D2YK71_VIBMI
          Length = 748

 Score = 47.9 bits (112), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 22/131 (16%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
             +   T+ ELA   G+    + V     ++ W+       KG             E+  
Sbjct: 1   MNKEWYTSTELAGLPGLPSTDRNVRIKAEKENWEKRPREIGKG------------FEYHI 48

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFL-SREGIRN 119
            +        L       +      ++         +  +   EQ K    L + +G   
Sbjct: 49  RSFPMETIAHL-------SRDFLQQKSEGELAAEKLVAELAAKEQAKKRHVLNASQGAMR 101

Query: 120 FLARLDIDESA 130
            L  L  ++ A
Sbjct: 102 LLNTLKAEDRA 112


>UniRef50_B8GS44 Transposase A n=1 Tax=Thioalkalivibrio sp. HL-EbGR7
          RepID=B8GS44_THISH
          Length = 671

 Score = 47.9 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 22/94 (23%), Gaps = 5/94 (5%)

Query: 3  RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE--F 58
          R     + + LA   G+   +Q V    +  GW   K  G KGG          +     
Sbjct: 4  REEQWFSAKALAGLPGMPGTQQNVTAKAKRDGWACRKRSG-KGGGREYAFSSLPIATQAA 62

Query: 59 IQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQ 92
          +                E             +  
Sbjct: 63 LLKAAEPAARAARAAQGEPAGAPGEYDAEALWAW 96


>UniRef50_A6W3I3 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1
           RepID=A6W3I3_MARMS
          Length = 216

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 3   RLRNKMTTEELAECLGVAKQTVN--RWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
             +   T  ELA   G+     N  R  + + W+  +  G++G             +  Q
Sbjct: 1   MTKEWFTAAELAGQKGMPAHATNVTRKAKSQNWEYRQITGLRGVNFEYHASSLP--QETQ 58

Query: 61  NTPAFHNTPMLMEAEERIAEYAP----GARAPAYRQIINAIDNMTDIEQEKVAQFLSREG 116
                      ++AE   +         A+A  + +       +    +  + + LS + 
Sbjct: 59  EALGLEGVSKPVQAENNDSNMVTIQIYSAKAKTWNKAKPETHMVLP--KGYLPKSLSEQE 116

Query: 117 IRNFLARLDIDES 129
           + N  A L+  +S
Sbjct: 117 LNNLFA-LEAPDS 128


>UniRef50_A6D441 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
          RepID=A6D441_9VIBR
          Length = 230

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 13/72 (18%)

Query: 4  LRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQN 61
          ++      EL +  G+  +   + +  +  GWK+ K  G            ++  E+  +
Sbjct: 1  MKEWFLASELMDLPGMPSSNSGIAQKAKRDGWKSRKTRG-----------QSRALEYHIS 49

Query: 62 TPAFHNTPMLME 73
          +    +   L E
Sbjct: 50 SFDERDLAELRE 61


>UniRef50_Q0T6N1 Putative repressor protein n=3 Tax=Shigella flexneri
           RepID=Q0T6N1_SHIF8
          Length = 169

 Score = 46.8 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 2   KRLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFI 59
             +   MT +++ E  G+    Q V++  +++GW      G +G             E+I
Sbjct: 5   NEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRG----------PGVEYI 54

Query: 60  QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRN 119
              PA     +     + +  ++         ++     NM       + Q      +  
Sbjct: 55  PAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDT 114

Query: 120 FLARLDID 127
            LA L ID
Sbjct: 115 LLATLGID 122


>UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersinia kristensenii
           ATCC 33638 RepID=C4U3A5_YERKR
          Length = 73

 Score = 46.8 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 40  GVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDN 99
           G++G             E+  ++   + +  +    E     +       +   INA   
Sbjct: 2   GIQGKGI----------EYFIDSLPDNVSTYIYHHSELFERISIQEHFDIW---INAFKQ 48

Query: 100 MTDIEQEKVAQFLSREGIRNFLARL 124
           +T  E+ K ++++ REGI +    L
Sbjct: 49  LTPSERYKFSEYILREGIISIYKNL 73


>UniRef50_Q2LQD6 Transposase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQD6_SYNAS
          Length = 754

 Score = 46.8 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 5   RNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPA 64
           +++ + +ELA  +G++ Q + +   ++GW  E   G  G R         V    +    
Sbjct: 10  KDRFSAKELAVIMGISWQAIQKRADQEGWPCEMETGRGGKRKLFRRAVLPVDWQARIARQ 69

Query: 65  FHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARL 124
                    A E          +P       A + + D+E+EK  + L +E      ARL
Sbjct: 70  RAAQAAAAIAPE----------SPEMAGYRAARNYLEDLEREKEEKRLIKERGLVEFARL 119


>UniRef50_A9D2T9 Transposase, putative n=1 Tax=Hoeflea phototrophica DFL-43
          RepID=A9D2T9_9RHIZ
          Length = 647

 Score = 46.8 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 4  LRNKMTTEELAECLGVAKQTVNRWIREKGWKT-----EKFPGVKGGRARLILVDTQVCEF 58
          +R   T +E+A+  GV+++ +N+  R+  W+       K  G  GG      V       
Sbjct: 1  MRQFFTPKEIADAAGVSERAINQMARKSHWRHQDQKARKRAGRGGG--WEYHVSLFPQAA 58

Query: 59 IQNTPAFHNTPMLMEA 74
                 H  P     
Sbjct: 59 QARLMVIHGAPANANR 74


>UniRef50_P07636 Transposase n=8 Tax=root RepID=TRA_BPMU
          Length = 663

 Score = 46.4 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 7   KMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF----IQ 60
            ++ +E A   G+      V    +++GW+     GVKGG+A     ++   E     + 
Sbjct: 4   WVSPKECANLPGLPKTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAALLL 63

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQ 105
                  +    E      E     R   + +     DN +D ++
Sbjct: 64  RQGEIETSLGYFEIARPTLEAHDYDREALWSKW----DNASDSQR 104


>UniRef50_A1RM55 Integrase, catalytic region n=1 Tax=Shewanella sp. W3-18-1
           RepID=A1RM55_SHESW
          Length = 727

 Score = 46.0 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 14/113 (12%)

Query: 3   RLRNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
            L   +T +EL +   +   +  V R  + +GW   K  G  GG            E+  
Sbjct: 1   MLDIWLTAKELEDFPELPKTESGVIRRAKREGWICRKREGRGGG-----------FEYHL 49

Query: 61  NTPAFHNTPM-LMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFL 112
           N+         L E  +             + +      N +  E+    +F+
Sbjct: 50  NSLPLAAQQHILSEKTKAQIAKKTEQAKTLHEKFSGEKKNASKDEKTAALRFM 102


>UniRef50_B7UXK6 Transposase A n=6 Tax=root RepID=B7UXK6_PSEA8
          Length = 689

 Score = 45.6 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 14/106 (13%)

Query: 6   NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTP 63
              + +ELA   GV    + V      K W   +  G            T+  E+  +  
Sbjct: 3   EWFSAQELAGLPGVPGTARNVKAMAERKSWSGRRRVG------------TKAIEYHVSAL 50

Query: 64  AFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVA 109
                  L+ A           +      +      +    ++ V 
Sbjct: 51  PKETRAALLNAALGEVATKAVRQETQLALVETNRQQLVADARQGVL 96


>UniRef50_A7JUV9 Possible transposase n=1 Tax=Mannheimia haemolytica PHL213
           RepID=A7JUV9_PASHA
          Length = 176

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 2   KRLRNKMTTEELAE----CLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE 57
             L+   + +ELAE    CL   KQ V    +++GW T K  GV G      L +    +
Sbjct: 4   NSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKKVGVGGEILEFALSNLP--Q 61

Query: 58  FIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGI 117
            IQ          ++EA+ +               +      + D     VA  L  EG 
Sbjct: 62  EIQTEIRSRFMSAVVEAKPKKLPAV--RAEVDVGNLTTKQREIADARMALVAYVLELEGS 119

Query: 118 RNFLARLDI 126
            + +  +  
Sbjct: 120 MSRIKAITY 128


>UniRef50_A7JV32 Possible bacteriophage transcriptional regulator n=1
          Tax=Mannheimia haemolytica PHL213 RepID=A7JV32_PASHA
          Length = 225

 Score = 43.7 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 5  RNKMTTEELAECLGVAKQTVN--RWIREKGWKTEKFPGVKGGRARLILVDTQV 55
          +   T  E+A    + +Q  N  R   +  W   +  G +G           +
Sbjct: 7  KEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEGKRGVAFEYHYSSLPI 59


>UniRef50_Q2W6I7 Putative uncharacterized protein n=1 Tax=Magnetospirillum
           magneticum AMB-1 RepID=Q2W6I7_MAGSA
          Length = 193

 Score = 43.3 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 2   KRLRNKMTTEEL--AECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE 57
           +R++   T  EL      G+  +K  V R  RE+GW TEK P   G R            
Sbjct: 41  RRIKEWFTAAELVALRLPGLPTSKAAVTRIAREQGWTTEKVPCQGGERHAYHFTSLPRRA 100

Query: 58  F 58
           F
Sbjct: 101 F 101


>UniRef50_B0US86 Transposase-like Mu n=20 Tax=Pasteurellaceae RepID=B0US86_HAES2
          Length = 662

 Score = 42.9 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 13/135 (9%)

Query: 1   MKRLRNKMTTEELAE----CLGVAKQTVNRWIREKGWKTEKFPGVKGGRAR-LILVDTQV 55
           M  L+   + +EL       L   K+ V    + + W++ K  G  GG    L  +  +V
Sbjct: 1   MCELKPYYSAQELIGLQLVILPTTKKAVIDKAKRENWQSRKRVGRGGGVEYALSSLPQEV 60

Query: 56  CEFIQNTPAFHNTP--------MLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEK 107
            E I++  A             +     E + E    A       +   +       + K
Sbjct: 61  QEEIRDKFATSVVAGKPKKLPVLKSVVLEDLTEKQRQAADARMTLVAYILQLEQAQPRYK 120

Query: 108 VAQFLSREGIRNFLA 122
             +F  ++  +N L+
Sbjct: 121 AVKFFCQQAKQNLLS 135


>UniRef50_B6IMZ2 Mu transposase, putative n=1 Tax=Rhodospirillum centenum SW
          RepID=B6IMZ2_RHOCS
          Length = 191

 Score = 42.9 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 3  RLRNKMTTEELAEC--LGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEF 58
          R+R   +  ELA     G+   K  + R  R + W+  +  G  G R    +       F
Sbjct: 39 RVREWFSAAELAGVRLPGLPATKAGITRLARAEAWRVREVHGRGGIRFEYHVTSLPPRAF 98


>UniRef50_A4JDI5 MuA-transposase/repressor protein CI, DNA-binding n=2 Tax=root
           RepID=A4JDI5_BURVG
          Length = 726

 Score = 42.5 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 17/124 (13%)

Query: 5   RNKMTTEELA--ECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ 60
           ++  T  ELA     GV   +Q V      + W   +    KG      L      E   
Sbjct: 6   KSHYTAPELAMLGLPGVPTTEQGVRYSATREKWAARRR--AKGKGLEYALDSLPA-EAQA 62

Query: 61  NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF 120
                 +  ++     + A+           Q++      TD ++ +      R+GI + 
Sbjct: 63  AIRHRASAALVTSVPAQPAKAVIRREQQL--QLVE-----TDAQRLRADA---RKGILSI 112

Query: 121 LARL 124
           L R+
Sbjct: 113 LDRI 116


>UniRef50_Q9CNL1 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
          RepID=Q9CNL1_PASMU
          Length = 216

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 13/74 (17%)

Query: 20 AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQV-------------CEFIQNTPAFH 66
          + + + +    +GW+  +  GVKG           +                  N P  H
Sbjct: 10 SDKGIVKKAAREGWQKRQRQGVKGKTFEYHYTSFPIAVQQQLGLYQAEQPHSQVNEPRRH 69

Query: 67 NTPMLMEAEERIAE 80
           T  +   E    E
Sbjct: 70 YTTEVSSIENTQTE 83


>UniRef50_Q125Z1 Integrase, catalytic region n=1 Tax=Polaromonas sp. JS666
          RepID=Q125Z1_POLSJ
          Length = 772

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 5  RNKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNT 62
          ++ +T  EL     +   K+ V+R     GW+  +  G  G R    +         +  
Sbjct: 6  KDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATT--RAA 63

Query: 63 PAFHNTPMLM 72
           ++H T +L 
Sbjct: 64 LSWHTTAVLA 73


>UniRef50_Q38452 Transposase (Fragment) n=1 Tax=Pseudomonas phage D3112
          RepID=Q38452_BPD31
          Length = 48

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 6  NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLI 49
                +LA   G+    + V +    +GWK +K  G  GG    +
Sbjct: 3  EWFMPTKLAGLPGLPTTDRGVRKLAEREGWKKQKHSGRGGGYEYHV 48


>UniRef50_B6ISS2 Phage transposase protein A, putative n=1 Tax=Rhodospirillum
           centenum SW RepID=B6ISS2_RHOCS
          Length = 710

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 4   LRNKMTTEELAEC----LGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFI 59
           +++  T  ELA+     +   ++ +       GW++ +     GGR    L        +
Sbjct: 1   MKDWFTAAELADLQLPAIASTERGIRGQATRGGWESRQRAARGGGR-EYPLSALPEEARL 59

Query: 60  QNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIE 104
           +            E        + G              ++ ++E
Sbjct: 60  ELARRAAAEAGDYEKPTPPKRKSVGPAPQNVNVATMPEKHLAEME 104


>UniRef50_C5S4Q8 Putative phage transposase n=1 Tax=Actinobacillus minor NM305
          RepID=C5S4Q8_9PAST
          Length = 663

 Score = 41.0 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 6  NKMTTEELAECLGV--AKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTP 63
             +  +LA   G+  + Q VN+  R++ W+          + + I    +  E+  ++ 
Sbjct: 3  EWFSASDLAGVKGMPSSPQGVNKKARQELWQ----------KQQQIGKQGKAFEYHISSL 52

Query: 64 AFHNTPML 71
                 L
Sbjct: 53 PPETQQAL 60


>UniRef50_B8FGN6 Mu transposase n=1 Tax=Desulfatibacillum alkenivorans AK-01
          RepID=B8FGN6_DESAA
          Length = 653

 Score = 40.6 bits (93), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 3  RLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVC 56
            +   T +E+A+ +G+ +++V R   ++GW         G +         + 
Sbjct: 1  MEKRTWTAQEIAKAIGLNERSVQRRANKEGWLYVAIKCRGGRKKVFAHSGLPIP 54


>UniRef50_A3VYG1 Transposase, putative n=5 Tax=Rhodobacteraceae RepID=A3VYG1_9RHOB
          Length = 707

 Score = 38.7 bits (88), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 5   RNKMTTEELAECLGV-----AKQTVNRWIREKGWKT-----EKFPGVKGGRARLILVDTQ 54
           +   +  +LAE  G+      K+ +N     +GW        +  G  GG          
Sbjct: 8   QEWWSAADLAE-AGLPDLPGTKRKINLLAEREGWARHAGKVRRRKGA-GGGVEYHWSLLP 65

Query: 55  VCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSR 114
           +   ++ +    N+P     ++   E    A   A  +    ++ + ++E    A     
Sbjct: 66  IRARMRLSADLVNSPAARPGKDEAWERYAAAGDKARTEAEARLEAIAEVELLVGAGLTRS 125

Query: 115 EGIRNFLARLDIDESA 130
             +R    +L   E +
Sbjct: 126 AAVREVARKLGRSEKS 141


>UniRef50_P06019 Repressor protein CI n=3 Tax=root RepID=RPC1_BPMU
          Length = 174

 Score = 38.3 bits (87), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 23  TVNRWIREKGWKTEKFPGVKGGRARLILV---DTQVCEFIQNTPAFHNTPMLMEAEERIA 79
            V+     +GW  +K  GVKGG+A    V    T+  E +             +A E+  
Sbjct: 12  GVHYRANVQGWTKQKKEGVKGGKAVEYDVMSMPTKEREQVIAHLGLSTPDTGAQANEKQD 71

Query: 80  EYAPGARAPAYRQIINAIDNMTDIEQEK 107
                        +IN I+ +   E  K
Sbjct: 72  SSEL--INKLTTTLINMIEELEPDEARK 97


>UniRef50_O05069 Mu-like prophage FluMu transposase A n=5 Tax=Pasteurellaceae
           RepID=TRA_HAEIN
          Length = 687

 Score = 38.3 bits (87), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 2   KRLRNKMTTEELAEC----LGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCE 57
           + L+   +  ELA      L  A + +    + + WK++K  G  GG     L    +  
Sbjct: 4   QSLKTHYSVYELANLKLKTLPSAPKNIWEQAKRENWKSQKRQGR-GGGLEYELASLPI-- 60

Query: 58  FIQNTPAFHNTPMLMEAEERIAEYA-PGARAPAYRQIINAIDNMTDIEQEKV 108
            +QN      TP       +  E   P A    ++    A     +  + K+
Sbjct: 61  EVQNELLLKTTPEQTAVALQKIEETRPLASNEVWQLWDEASAKAQEQAKIKL 112


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.304    0.120    0.299 

Lambda     K      H
   0.267   0.0378    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,677,178
Number of Sequences: 3077464
Number of extensions: 15895428
Number of successful extensions: 67337
Number of sequences better than 1.0e-01: 63
Number of HSP's better than  0.1 without gapping: 37
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 67238
Number of HSP's gapped (non-prelim): 91
length of query: 130
length of database: 1,040,396,356
effective HSP length: 95
effective length of query: 35
effective length of database: 748,037,276
effective search space: 26181304660
effective search space used: 26181304660
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 87 (38.2 bits)
