>ss_pred
CCHHHHHCCHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>ss_conf
9524652799998378999988999999742640133027777630221153036789986115211105762243322000266652778999999525989899999999877899999873864459
>batch____
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA
>UniRef50_C4XBN9(1-126:130) Putative negative regulator n=7 Tax=Enterobacteriaceae RepID=C4XBN9_KLEPN  E=2e-26 s/c=0.94 id=52% cov=94%
MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLTNIPARRH----LLTDNHLAE-SPGAYLvneadAIWRQITETLQLMTPAEQLQLRDLLAREGISGFLARLGI----
>UniRef50_C5B7F4(3-113:114) MuA-transposase/repressor protein CI DNA-binding n=2 Tax=Edwardsiella RepID=C5B7F4_EDWI9  E=2e-06 s/c=0.48 id=26% cov=82%
--------SAKELAGIGGFpsTPQAINQRAKSEGWRRQRRSGVQG----------KAVEYHISCFPPEVVDELLARDE-QAQYLISSNQPEKVWYSILLQ-MSEEERKKVTSLILRIGINEFLRRLG-----
>UniRef50_C4K715(3-115:115) Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae RepID=C4K715_HAMD5  E=1e-05 s/c=0.45 id=28% cov=84%
----KEWFSAKELIHSPGLpsSTQGINQMARRQGWKHRRRLGVQ-GKALEYHIDS-LPKPILKQLRLKEDAEKYSL-NQQDPFTIW---------IEAYRQLTDSEREKLIAFLFREGIQGLIKRL------
>UniRef50_B1JMJ9(3-115:115) MuA-transposase/repressor protein CI DNA-binding n=31 Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY  E=8e-05 s/c=0.43 id=28% cov=86%
----KEWFAAKELAGLEGLpsSPQGINLMAKREGWEQRRRRGVQG----------KAVEYHIGSLPITILNSLQLREE-PAQYATTRQDPL-TLWVEAYYRFTEAEREQVISFIFREGAKSLIERLEMD---
>UniRef50_C6CJR2(5-120:136) MuA-transposase/repressor protein CI DNA-binding n=9 Tax=Enterobacteriaceae RepID=C6CJR2_DICZE  E=2e-24 s/c=0.97 id=22% cov=88%
MMMEKTWFTTNELLGVAGLpkSRQGLNKKAKDHGWERRRRKGVQGKGVEYAIWSLP--EEVKTTLMRETSPDYAVVTPTNVQESTW---------IQIYHQLSVEERTRLIGHILREGAMGMLARL------
>UniRef50_B6WSU4(1-111:697) Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSU4_9DELT  E=8e-07 s/c=0.49 id=20% cov=65%
MNTIATTYSTQELAHYLGITVKSVHIRAKREGWQALPRAGRGGGKLWVVsSMPAEIRDRLASALLRQPAA---IIEESAACASIGSN--------------------------------------------
>UniRef50_Q58ZD8(1-105:669) MuA transposase subunit-like protein n=6 Tax=Haemophilus influenzae RepID=Q58ZD8_HAEIN  E=2e-06 s/c=0.51 id=33% cov=32%
---MKNWVTAKEIAGIGGLSkhPTNVNRLARKEKWIFREIQGVQGG--------------------------------------------------------------------------------------
>UniRef50_A8GHQ2(1-116:116) MuA-transposase/repressor protein CI DNA-binding n=3 Tax=Enterobacteriaceae RepID=A8GHQ2_SERP5  E=2e-21 s/c=0.89 id=30% cov=83%
---------ARELTGIAGLpsSPQGINLMARREGWISRRRKGVQGK----------AVEYHINSLPIG-ARSLLVLQEDPAEYQLERQDPLAVW-VEYYYHLSESEREKVLTFLMREGIDSLLALIAAEE--
>UniRef50_B6XCH8(1-109:118) Putative uncharacterized protein n=3 Tax=Providencia RepID=B6XCH8_9ENTR  E=2e-18 s/c=0.85 id=20% cov=82%
---IKEWLTAKELVGRQGLpsSTQGINAMARRENWLSRKRRGIQGK----------ALEYHISSIPID-LEEPTVMYEAPRIYHVKRDEHAHIW-QEAYNQLSHDERVAVLSFIMRKGALALI---------
>UniRef50_C0N301(6-112:722) Mu DNA binding, I gamma subdomain family n=5 Tax=Gammaproteobacteria RepID=C0N301_9GAMM  E=6e-17 s/c=0.83 id=24% cov=82%
----REWFTATELANKPGLPkyKRGVNQQASKQGWNTRQVK-VRGGSANEYHLSSLPVET-QAALIKQHLPTPVKSSSESTEFS-YDPQALWQHYDNKPQKQKDAAQNKLNLLL------------------
>UniRef50_Q8EJ30(3-110:715) Transposase, putative n=1 Tax=Shewanella oneidensis RepID=Q8EJ30_SHEON  E=6e-10 s/c=0.60 id=25% cov=28%
--------SPQELLQLPGMptTVQGIRFKAKTESWESRKKEGSKG---------------------------------------------------------------------------------------
>UniRef50_A6W3I3(3-87:216) Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3I3_MARMS  E=2e-07 s/c=0.67 id=25% cov=31%
----KEWFTAAELAGQKGMPAHATNvtRKAKSQNWEYRQITGLRG---------------------------------------------------------------------------------------
>UniRef50_A7JUV9(4-128:176) Possible transposase n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JUV9_PASHA  E=0.0001 s/c=0.38 id=41% cov=32%
---LKTHYSAKELAElslaCLPKTKQGVLYQAKKQGWTTHKKVGVGG---------------------------------------------------------------------------------------
>UniRef50_Q2W6I7(42-164:193) Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W6I7_MAGSA  E=0.0001 s/c=0.39 id=41% cov=34%
--RIKEWFTAAELvaLRLPGLptSKAAVTRIAREQGWTTEKVPCQGGER-------------------------------------------------------------------------------------
>UniRef50_A7MKV6(1-128:129) Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MKV6_ENTS8  E=1e-22 s/c=0.84 id=31% cov=98%
MNQFTRWMTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFLATDKLRYSAHLYNRiEETPAPYVTWDNE-MMAQFIRTLEMLSPQEQARLSELISEEGAAGLVKRLGLRD--
>UniRef50_C4K715(3-115:115) Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae RepID=C4K715_HAMD5  E=5e-21 s/c=0.89 id=26% cov=84%
----KEWFSAKELIHSPGLPSstQGINQMARRQGWKHRRRLGVQGKALEYHIDSLP--KPILKQLRLKEDAEKYSL-NQQDPFTIW---------IEAYRQLTDSEREKLIAFLFREGIQGLIKRL------
>UniRef50_B1JMJ9(1-115:115) MuA-transposase/repressor protein CI DNA-binding n=31 Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY  E=1e-19 s/c=0.85 id=26% cov=86%
----KEWFAAKELAGLEGLPssPQGINLMAKREGWEQRRRRGVQGK----------AVEYHIGSLPI-TILNSLQLREEPAQYATTRQDPLTLW-VEAYYRFTEAEREQVISFIFREGAKSLIERLEMD---
>UniRef50_D2BRS4(3-124:140) MuA-transposase/repressor protein CI DNA-binding protein n=6 Tax=Enterobacteriaceae RepID=D2BRS4_DICD5  E=1e-19 s/c=0.80 id=25% cov=88%
--------TTNELLGVAGLPKsrQGLNKKAKDHGWERRRRKGVQGKGVEYAiwSLPEEVKATLMRATLMGTTLMRETAPDYVSAASAGAQEYTWIQI---YHQLSAEERTRLIGHILREGAMSVLARL------
>UniRef50_P07040(5-124:174) Repressor protein CI n=3 Tax=root RepID=RPC1_BPD10   E=6e-19 s/c=0.79 id=18% cov=92%
--EIKEWFNAKELEGMPGVPKlaTNITRKAVAEDWVKRQRHGGKG----------VAYEYHINSLPEETRRAIKGASLSDKPVHTSIVHTVDERLIYAMSFLTPDEQAAAVEIIRVAGIKGLMPTIVSKDKA
>UniRef50_Q0EWA9(1-115:742) Transposase and inactivated derivative n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWA9_9PROT  E=2e-15 s/c=0.73 id=20% cov=85%
-------MPASELAGLPGLpgTDRGIRKLADREGWQSRKRQKGKGLEYSPSSLP-EVTRTHLAHLSVKAAMDEVSKQPEYAQYA--EAEPVESIPGVKTREMLDEEAAEHRRLIAR-GIAEF----------
>UniRef50_D2YK71(3-112:748) Transposase, putative n=1 Tax=Vibrio mimicus VM573 RepID=D2YK71_VIBMI  E=2e-15 s/c=0.76 id=18% cov=80%
--------TSTELAGLPGLpsTDRNVRIKAEKENWEKRPREIGKG------------FEYHIRSFPMETIAHLSRDFLQQ-------KSEGELAAEKLVAELAAKEQAKKRHVLnASQGAMRLLNTLKAEDRA
>UniRef50_A8G8Y9(1-89:90) Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G8Y9_SERP5  E=6e-13 s/c=0.85 id=52% cov=22%
---------------------------------------------------------------------------------------------------LTECEREKVLAFLIREGIGSLLARISAD---
>UniRef50_A1RM55(5-102:727) Integrase, catalytic region n=1 Tax=Shewanella sp. W3-18-1 RepID=A1RM55_SHESW  E=1e-09 s/c=0.65 id=32% cov=29%
-------LTAKELEDFPELPKteSGVIRRAKREGWICRKREGRGGG--------------------------------------------------------------------------------------
>UniRef50_B8DK74(1-125:732) Transposase-like Mu n=3 Tax=Desulfovibrio vulgaris RepID=B8DK74_DESVM  E=7e-09 s/c=0.49 id=30% cov=38%
MASPKEAYTTRDLLPLLGIsSESTVIRRASREGWTSRPRKGRGGGNEWLL---------------------------------------------------------------------------------
>UniRef50_A9D2T9(1-121:647) Transposase, putative n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D2T9_9RHIZ  E=3e-08 s/c=0.50 id=31% cov=32%
---MRQFFTPKEIADAAGVSERAINQMARKSHWRHqdqkaRKRAGRGGG--------------------------------------------------------------------------------------
>UniRef50_P06019(5-112:174) Repressor protein CI n=3 Tax=root RepID=RPC1_BPMU   E=3e-08 s/c=0.55 id=23% cov=69%
------------------------------QGWTKQKKEGVKGGKAVEYdvmSMPTKEREQVIAHLGLSTPDTGAQANEKQDSSELINK--LTTTLINMIEELEPDEARKALKLLSKGGLLALM---------
>UniRef50_A4JDI5(5-116:726) MuA-transposase/repressor protein CI, DNA-binding n=2 Tax=root RepID=A4JDI5_BURVG  E=5e-08 s/c=0.53 id=29% cov=24%
---VKSHYTAPELAmlGLPGVptTEQGVRYSATREKW-------------------------------------------------------------------------------------------------
>UniRef50_Q58ZE0(1-121:166) CI repressor-like protein n=5 Tax=Haemophilus influenzae RepID=Q58ZE0_HAEIN  E=8e-08 s/c=0.48 id=27% cov=35%
MKSKKEWYLPRDLAGLGDLSpfPSNVTRKAKQEGWIKREAKGIKGG--------------------------------------------------------------------------------------
>UniRef50_A8I7J2(1-124:725) Transposase protein A n=2 Tax=Rhizobiales RepID=A8I7J2_AZOC5   E=3e-06 s/c=0.43 id=19% cov=33%
---MKSWFTAAEIAGLGlpdiPESERGVRKMAGRDAWPSREREASGGGR-------------------------------------------------------------------------------------
>UniRef50_C4XBN9(1-126:130) Putative negative regulator n=7 Tax=Enterobacteriaceae RepID=C4XBN9_KLEPN  E=6e-29 s/c=1.02 id=47% cov=98%
MMKLKDKMTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLTNIPARRHLLTDNHLAESPGAYLVNEADAIWRQITETLQLMTPAEQLQLRDLLAREGISGFLARLGI----
>UniRef50_C2LKG3(1-115:115) MuA-transposase/repressor protein CI, DNA-binding n=5 Tax=Enterobacteriaceae RepID=C2LKG3_PROMI  E=9e-21 s/c=0.88 id=27% cov=81%
--------TAMELTGIGGLPksPQGVNAKAKRESWLKQKRTNKQGNGV----------EYHYSCLPEETLIAL-ELYEPLAHYKLNKEEPL-VIWVKAFQQLNDGEQKTVTELILRDGIRSFLEKI------
>UniRef50_P0AD38(1-113:114) Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae RepID=YFEC_ECOL6  E=2e-20 s/c=0.88 id=42% cov=87%
-------MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----------ERPEGQGEApALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDS-
>UniRef50_B8DLF1(1-103:728) Transposase-like Mu n=4 Tax=Desulfovibrio RepID=B8DLF1_DESVM   E=4e-18 s/c=0.90 id=29% cov=80%
MKTFKDAYTAGELAAALGVTDRAVQMRARREGWQARRKPGRGGGNEWLVV-----------SMPEGTALAVRMAEERTAVAAAASDHPPTTSAPSAPGAPTPLDPKRRQQALAR----------------
>UniRef50_Q0T6N1(5-122:169) Putative repressor protein n=3 Tax=Shigella flexneri RepID=Q0T6N1_SHIF8  E=3e-15 s/c=0.70 id=20% cov=85%
-------MTPKQITELDGMpgTIQGVHKRAKKEGWPKRSQEGRRG----------PGVEYIPAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDTLLATLGID---
>UniRef50_C4LBA7(1-117:741) Integrase catalytic region n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBA7_TOLAT  E=3e-15 s/c=0.71 id=18% cov=69%
---MKEWFISSELAGLVGLPqyQDGVRKKADREDWKNRKRESGKGLEYHISSLPSETRAYLAKTMASETASAIQdHAKAGVAMAALADKSAVSVQ--------------------------------------
>UniRef50_Q2LQD6(10-119:754) Transposase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQD6_SYNAS   E=2e-13 s/c=0.70 id=23% cov=85%
----KDRFSAKELAVIMGISWQAIQKRADQEGWPCEMETGRGGKRKL----------FRRAVLPVDWQARIARQRAAQAAAAIAPESPEMAGYRAARNYLEDLEREKEEKRLIKERGLVEFARL------
>UniRef50_C5S4R0(1-63:179) Putative uncharacterized protein n=1 Tax=Actinobacillus minor NM305 RepID=C5S4R0_9PAST  E=2e-11 s/c=1.12 id=29% cov=35%
MGNFKEWFSASELAGIQGLpkTPQGINKRARTQNWQKRNKDGVQGG--------------------------------------------------------------------------------------
>UniRef50_Q30W02(1-76:708) Bacteriophage transposase A protein, putative n=4 Tax=Desulfovibrio RepID=Q30W02_DESDG  E=6e-10 s/c=0.86 id=31% cov=35%
MAKAKDAYTAKELAIALNVTVMTITRRAEREGWQSRPRAGRGGG--------------------------------------------------------------------------------------
>UniRef50_B7UXK6(1-111:689) Transposase A n=6 Tax=root RepID=B7UXK6_PSEA8   E=7e-10 s/c=0.58 id=29% cov=27%
--------SAQELAGLPGVpgTARNVKAMAERKSWSGRRRVGTK----------------------------------------------------------------------------------------
>UniRef50_A6D441(1-63:230) Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D441_9VIBR  E=1e-08 s/c=0.97 id=21% cov=29%
---MKEWFLASELMDLPGMPSsnSGIAQKAKRDGWKSRKTRG------------------------------------------------------------------------------------------
>UniRef50_O05069(5-112:687) Mu-like prophage FluMu transposase A n=5 Tax=Pasteurellaceae RepID=TRA_HAEIN  E=2e-08 s/c=0.56 id=29% cov=32%
---LKTHYSVYELANLklktLPSAPKNIWEQAKRENWKSQKRQGRGGG--------------------------------------------------------------------------------------
>UniRef50_B8FGN6(1-106:653) Mu transposase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGN6_DESAA  E=3e-06 s/c=0.50 id=21% cov=33%
--------TAQEIAKAIGLNERSVQRRANKEGWLYVAIKCRGGRKKVFAH--------------------------------------------------------------------------------
>UniRef50_C4K715(3-115:115) Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae RepID=C4K715_HAMD5  E=4e-22 s/c=0.93 id=28% cov=84%
----KEWFSAKELIHSPGLPSstQGINQMARRQGWKHRRRLGVQGKAL----------EYHIDSLP-KPILKQLRLKEDAEKYSLNQQDPFTIW-IEAYRQLTDSEREKLIAFLFREGIQGLIKRL------
>UniRef50_A7JV30(1-98:656) Bacteriophage transposase n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JV30_PASHA  E=5e-11 s/c=0.70 id=27% cov=32%
---MKEWFLAKEIAGLSGVPelPNSVSRLATKEGWQKRQIQGVRG---------------------------------------------------------------------------------------
>UniRef50_B8GS44(3-115:671) Transposase A n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GS44_THISH  E=1e-10 s/c=0.60 id=32% cov=29%
--------SAKALAGLPGMpgTQQNVTAKAKRDGWACRKRSGKGGGR-------------------------------------------------------------------------------------
>UniRef50_A7JV32(1-113:225) Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JV32_PASHA  E=6e-10 s/c=0.58 id=22% cov=31%
----KEWFTASEVAGMGNLPEQpsNVTRRATKNNWLKRQIEGKRG---------------------------------------------------------------------------------------
>UniRef50_A6W3I3(3-87:216) Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3I3_MARMS  E=7e-10 s/c=0.77 id=25% cov=31%
----KEWFTAAELAGQKGMPAHatNVTRKAKSQNWEYRQITGLRG---------------------------------------------------------------------------------------
>UniRef50_P07636(1-99:663) Transposase n=8 Tax=root RepID=TRA_BPMU   E=8e-09 s/c=0.62 id=32% cov=31%
-------VSPKECANLPGLPKtsAGVIYVAKKQGWQNRTRAGVKGGKA------------------------------------------------------------------------------------
>UniRef50_A9L0K4(3-72:738) Integrase catalytic region n=2 Tax=Shewanella baltica RepID=A9L0K4_SHEB9  E=9e-09 s/c=0.88 id=27% cov=32%
----KEWFSTVEIAELLDVGDRRVRDRAKQENWQKQRRQGLGGG--------------------------------------------------------------------------------------
>UniRef50_B0UVF4(1-109:145) Putative uncharacterized protein n=1 Tax=Haemophilus somnus 2336 RepID=B0UVF4_HAES2  E=5e-08 s/c=0.54 id=24% cov=32%
---MKEWYTLKELLDVGGLpsTPQGIILYAKKDKWRRRRVSGVKG---------------------------------------------------------------------------------------
>UniRef50_Q38452(1-43:48) Transposase (Fragment) n=1 Tax=Pseudomonas phage D3112 RepID=Q38452_BPD31  E=1e-05 s/c=1.19 id=31% cov=28%
---------PTKLAGLPGLptTDRGVRKLAEREGWKKQKHSGRGGG--------------------------------------------------------------------------------------
>UniRef50_Q2NW40(1-119:127) Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NW40_SODGM  E=2e-19 s/c=0.81 id=24% cov=90%
MEIKKEWIATHELIGVGGLpkTRQGLNRRAREEGWQKRRREGARGKAVEYSWHSLP--DMVKKTLSLRTNPAEYQL-------SPQETSATWN---EIYRQLSDAERDFIVSFIVREGVLNLLKRLDYPD--
>UniRef50_UPI0001699232(1-112:150) hypothetical protein Epers_01870 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699232  E=3e-10 s/c=0.59 id=23% cov=48%
---MKRYLTAAELAGLPGMpgTPRSVNRAGDRGEIERRKKAKGKGWEYSLTSLPAETQRYLTRTAA------------------------------------------------------------------
>UniRef50_B0US86(1-125:662) Transposase-like Mu n=20 Tax=Pasteurellaceae RepID=B0US86_HAES2   E=8e-10 s/c=0.52 id=26% cov=48%
MCELKPYYSAQELIGLqlviLPTTKKAVIDKAKRENWQSRKRVGRGGGvEYALSSLPQEVQEEIRD---------------------------------------------------------------------
>UniRef50_A9ICZ8(3-108:653) Transposase A n=1 Tax=Bordetella petrii DSM 12804 RepID=A9ICZ8_BORPD  E=8e-09 s/c=0.58 id=15% cov=78%
----QDWFAAQELAGLPAMpaTVQGINHRAKTSAWQS-----------RPRAGRGGGREYAFASLPVETQAALLKRTTPAAPARPAPAAPdragLWEAYERRPQTLKDEAARRLSALQAVE---------------
>UniRef50_B6IMZ2(38-136:191) Mu transposase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IMZ2_RHOCS  E=1e-05 s/c=0.52 id=29% cov=32%
--RVREWFSAAELAGvrLPGLpaTKAGITRLARAEAWRVREVHGRGG---------------------------------------------------------------------------------------
