08/01/2012 11:40:32 : INFO  : Run start: Sun Jan  8 11:40:30 GMT 2012
08/01/2012 11:40:40 : INFO  : Initialised job
08/01/2012 11:40:43 : INFO  : Renaming log file 'phyre2_20120108_114029.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/phyre_20120108_114029.log'
08/01/2012 11:40:45 : INFO  : Initialised job:
Sequence
>batch____
MNKFIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAANPVACHHCN
NAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQKCDLCNQRSS
GTQACIEVCPTQALRLMDDKGLQQIKVARQRKTAAGKASSDAQPSRSAALLPVNSRKGAD
KISASERKTHFGEIYCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQEGK
IIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWR
PDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDK
TVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPG
VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTC
AYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDG
RRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHL
KKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTKAS

08/01/2012 11:40:47 : INFO  : Checked sequence
08/01/2012 11:40:52 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 11:40:54 : INFO  : PSI-BLAST 3 iterations
08/01/2012 11:44:05 : INFO  : PSI-BLAST 5 iterations
08/01/2012 11:48:36 : INFO  : Finished PSI-BLAST
08/01/2012 11:48:39 : INFO  : Running Buildali to generate a3m file
08/01/2012 12:27:52 : INFO  : Converting to HMM
08/01/2012 12:28:11 : INFO  : Calibrating HMM
08/01/2012 12:28:37 : INFO  : Searching HMM database
08/01/2012 12:39:04 : INFO  : Finished buildali
08/01/2012 12:39:06 : INFO  : Predicting secondary structure
08/01/2012 12:39:19 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 12:39:22 : INFO  : Predicting Disordered regions
08/01/2012 12:39:28 : INFO  : Predicted Disorder (Disopred)
08/01/2012 12:39:31 : INFO  : Running memsat_svm check
08/01/2012 12:42:53 : INFO  : Globular protein
08/01/2012 12:42:55 : INFO  : Predicted Transmembrane (memsat_svm) ID '35aaf9cd758c17d6'
08/01/2012 12:42:58 : INFO  : Initialising fold library search
08/01/2012 12:43:04 : INFO  : Initialised search input
08/01/2012 12:43:08 : INFO  : Building Ensemble models
08/01/2012 12:43:13 : INFO  : Building hh.c2vdcI_.model.1.pdb
08/01/2012 12:43:40 : INFO  : Building hh.c1gthD_.model.2.pdb
08/01/2012 12:43:59 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/hh.c1gthD_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/c1gthD_.1.pdb
08/01/2012 12:44:06 : INFO  : Building hh.c1ti2F_.model.3.pdb
08/01/2012 12:44:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/hh.c1ti2F_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/c1ti2F_.7.pdb
08/01/2012 12:44:32 : INFO  : Building hh.c1kqfB_.model.4.pdb
08/01/2012 12:44:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/hh.c1kqfB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/c1kqfB_.8.pdb
08/01/2012 12:44:57 : INFO  : Building hh.c2ivfB_.model.5.pdb
08/01/2012 12:45:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/hh.c2ivfB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/c2ivfB_.10.pdb
08/01/2012 12:45:25 : INFO  : Building hh.d1kqfb1.model.6.pdb
08/01/2012 12:45:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/hh.d1kqfb1.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/d1kqfb1.11.pdb
08/01/2012 12:45:50 : INFO  : Building hh.d1h0hb_.model.7.pdb
08/01/2012 12:46:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/hh.d1h0hb_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/d1h0hb_.16.pdb
08/01/2012 12:46:18 : INFO  : Building hh.c2vpyB_.model.8.pdb
08/01/2012 12:46:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/hh.c2vpyB_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/35aaf9cd758c17d6/c2vpyB_.17.pdb
08/01/2012 12:46:43 : INFO  : Building c1gthD_.1.pdb
08/01/2012 12:47:05 : INFO  : Building c2vdcI_.2.pdb
08/01/2012 12:47:29 : INFO  : Building c2v6oA_.3.pdb
08/01/2012 12:47:53 : INFO  : Building c1cjcA_.4.pdb
08/01/2012 12:48:18 : INFO  : Building c1lqtB_.5.pdb
08/01/2012 12:48:41 : INFO  : Building c1hyuA_.6.pdb
08/01/2012 12:49:04 : INFO  : Building c1ti2F_.7.pdb
08/01/2012 12:49:28 : INFO  : Building c1kqfB_.8.pdb
08/01/2012 12:49:51 : INFO  : Building c3ntaA_.9.pdb
08/01/2012 12:50:14 : INFO  : Building c2ivfB_.10.pdb
08/01/2012 12:50:37 : INFO  : Building d1kqfb1.11.pdb
08/01/2012 12:51:00 : INFO  : Building c1djnB_.12.pdb
08/01/2012 12:51:24 : INFO  : Building c2c3dB_.13.pdb
08/01/2012 12:51:47 : INFO  : Building c3k30B_.14.pdb
08/01/2012 12:52:10 : INFO  : Building c3icrA_.15.pdb
08/01/2012 12:52:32 : INFO  : Building d1h0hb_.16.pdb
08/01/2012 12:52:56 : INFO  : Building c2vpyB_.17.pdb
08/01/2012 12:53:20 : INFO  : Building c1ps9A_.18.pdb
08/01/2012 12:53:43 : INFO  : Building d1gtea1.19.pdb
08/01/2012 12:54:06 : INFO  : Building c3oc4A_.20.pdb
08/01/2012 12:57:58 : INFO  : Finished HH model building
08/01/2012 12:58:00 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 12:59:35 : INFO  : html domain output complete ID '35aaf9cd758c17d6'
08/01/2012 14:53:04 : INFO  : Run end  : Sun Jan  8 14:53:03 GMT 2012
