Phyre 2 Results for Q46820

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | Q46820
Date | Thu Jan 5 12:34:45 GMT 2012
Unique Job ID | 35aaf9cd758c17d6

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1gthD_
Top template information
PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
Confidence and coverage
Confidence: | 100.0% | Coverage: | 69%
438 residues ( 69% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
608 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | K | F | I | A | A | E | A | A | E | C | I | G | C | H | A | C | E | I | A | C | A | V | A | H | N | Q | E | N | W | P | L | S | H | S | D | F | R | P | R | I | H | V | V | G | K | G | Q | A | A | N | P | V | A | C | H | H | C | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | N | A | P | C | V | T | A | C | P | V | N | A | L | T | F | Q | S | D | S | V | Q | L | D | E | Q | K | C | I | G | C | K | R | C | A | I | A | C | P | F | G | V | V | E | M | V | D | T | I | A | Q | K | C | D | L | C | N | Q | R | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | T | Q | A | C | I | E | V | C | P | T | Q | A | L | R | L | M | D | D | K | G | L | Q | Q | I | K | V | A | R | Q | R | K | T | A | A | G | K | A | S | S | D | A | Q | P | S | R | S | A | A | L | L | P | V | N | S | R | K | G | A | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | K | I | S | A | S | E | R | K | T | H | F | G | E | I | Y | C | G | L | D | P | Q | Q | A | T | Y | E | S | D | R | C | V | Y | C | A | E | K | A | N | C | N | W | H | C | P | L | H | N | A | I | P | D | Y | I | R | L | V | Q | E | G | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  | ? |  |  | ? |  |  |  | ? |  | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | I | I | E | A | A | E | L | C | H | Q | T | S | S | L | P | E | I | C | G | R | V | C | P | Q | D | R | L | C | E | G | A | C | T | L | K | D | H | S | G | A | V | S | I | G | N | L | E | R | Y | I | T | D | T | A | L | A | M | G | W | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | P | D | V | S | K | V | V | P | R | S | E | K | V | A | V | I | G | A | G | P | A | G | L | G | C | A | D | I | L | A | R | A | G | V | Q | V | D | V | F | D | R | H | P | E | I | G | G | M | L | T | F | G | I | P | P | F | K | L | D | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | T | V | L | S | Q | R | R | E | I | F | T | A | M | G | I | D | F | H | L | N | C | E | I | G | R | D | I | T | F | S | D | L | T | S | E | Y | D | A | V | F | I | G | V | G | T | Y | G | M | M | R | A | D | L | P | H | E | D | A | P | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | V | I | Q | A | L | P | F | L | T | A | H | T | R | Q | L | M | G | L | P | E | S | E | E | Y | P | L | T | D | V | E | G | K | R | V | V | V | L | G | G | G | D | T | T | M | D | C | L | R | T | S | I | R | L | N | A | A | S | V | T | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | A | Y | R | R | D | E | V | S | M | P | G | S | R | K | E | V | V | N | A | R | E | E | G | V | E | F | Q | F | N | V | Q | P | Q | Y | I | A | C | D | E | D | G | R | L | T | A | V | G | L | I | R | T | A | M | G | E | P | G | P | D | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | R | R | R | P | R | P | V | A | G | S | E | F | E | L | P | A | D | V | L | I | M | A | F | G | F | Q | A | H | A | M | P | W | L | Q | G | S | G | I | K | L | D | K | W | G | L | I | Q | T | G | D | V | G | Y | L | P | T | Q | T | H | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | .
Sequence |  | K | K | V | F | A | G | G | D | A | V | H | G | A | D | L | V | V | T | A | M | A | A | G | R | Q | A | A | R | D | M | L | T | L | F | D | T | K | A | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1gthD_ |

### PDB 1gth chain D

Region: 189 - 637
Aligned: 438
Modelled: 449
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil

Phyre2
2 |
| c2vdcI_ |

### PDB 2vdc chain I

Region: 189 - 638
Aligned: 444
Modelled: 450
Confidence: 100.0%
Identity: 41%
PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.

Phyre2
3 |
| c2v6oA_ |

### PDB 2v6o chain A

Region: 218 - 639
Aligned: 381
Modelled: 404
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin glutathione reductase;
PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)

Phyre2
4 |
| c1cjcA_ |

### PDB 1cjc chain A

Region: 311 - 636
Aligned: 312
Modelled: 323
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (adrenodoxin reductase);
PDBTitle: structure of adrenodoxin reductase of mitochondrial p4502 systems

Phyre2
5 |
| c1lqtB_ |

### PDB 1lqt chain B

Region: 309 - 636
Aligned: 311
Modelled: 325
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: B: PDB Molecule:fpra;
PDBTitle: a covalent modification of nadp+ revealed by the atomic resolution2 structure of fpra, a mycobacterium tuberculosis oxidoreductase

Phyre2
6 |
| c1hyuA_ |

### PDB 1hyu chain A

Region: 308 - 634
Aligned: 298
Modelled: 312
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf

Phyre2
7 |
| c1ti2F_ |

### PDB 1ti2 chain F

Region: 1 - 160
Aligned: 160
Modelled: 160
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici

Phyre2
8 |
| c1kqfB_ |

### PDB 1kqf chain B

Region: 4 - 149
Aligned: 146
Modelled: 146
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli

Phyre2
9 |
| c3ntaA_ |

### PDB 3nta chain A

Region: 310 - 631
Aligned: 303
Modelled: 315
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase

Phyre2
10 |
| c2ivfB_ |

### PDB 2ivf chain B

Region: 2 - 141
Aligned: 140
Modelled: 140
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum

Phyre2
11 |
| d1kqfb1 |

### PDB 1kqf chain B domain 1

Region: 1 - 149
Aligned: 149
Modelled: 149
Confidence: 100.0%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
12 |
| c1djnB_ |

### PDB 1djn chain B

Region: 293 - 638
Aligned: 321
Modelled: 346
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)

Phyre2
13 |
| c2c3dB_ |

### PDB 2c3d chain B

Region: 273 - 631
Aligned: 321
Modelled: 327
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site

Phyre2
14 |
| c3k30B_ |

### PDB 3k30 chain B

Region: 230 - 639
Aligned: 339
Modelled: 358
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex

Phyre2
15 |
| c3icrA_ |

### PDB 3icr chain A

Region: 310 - 631
Aligned: 283
Modelled: 298
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd

Phyre2
16 |
| d1h0hb_ |

### PDB 1h0h chain B

Region: 2 - 149
Aligned: 148
Modelled: 148
Confidence: 100.0%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
17 |
| c2vpyB_ |

### PDB 2vpy chain B

Region: 1 - 149
Aligned: 149
Modelled: 149
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)

Phyre2
18 |
| c1ps9A_ |

### PDB 1ps9 chain A

Region: 230 - 630
Aligned: 310
Modelled: 323
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase

Phyre2
19 |
| d1gtea1 |

### PDB 1gte chain A domain 1

Region: 188 - 313
Aligned: 125
Modelled: 126
Confidence: 100.0%
Identity: 30%
Fold: Globin-like
Superfamily: alpha-helical ferredoxin
Family: Dihydropyrimidine dehydrogenase, N-terminal domain

Phyre2
20 |
| c3oc4A_ |

### PDB 3oc4 chain A

Region: 312 - 631
Aligned: 262
Modelled: 282
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family;
PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |
112 |
113 |
114 |
115 |
116 |
117 |
118 |
119 |
120 |
121 |
122 |
123 |
124 |
125 |
126 |
127 |
128 |
129 |
130 |
131 |
132 |
133 |
134 |
135 |
136 |
137 |
138 |
139 |
140 |
141 |
142 |
143 |
144 |
145 |
146 |
147 |
148 |
149 |
150 |
151 |
152 |
153 |
154 |
155 |
156 |
157 |
158 |
159 |
160 |
161 |
162 |
163 |
164 |
165 |
166 |
167 |
168 |
169 |
170 |
171 |
172 |
173 |
174 |
175 |
176 |
177 |
178 |
179 |
180 |
181 |
182 |
183 |
184 |
185 |
186 |
187 |
188 |
189 |
190 |
191 |
192 |
193 |
194 |
195 |
196 |
197 |
198 |
199 |
200 |
201 |
202 |
203 |
204 |
205 |
206 |
207 |
208 |
209 |
210 |
211 |
212 |
213 |
214 |
215 |
216 |
217 |
218 |
219 |
220 |
221 |
222 |
223 |
224 |
225 |
226 |
227 |
228 |
229 |
230 |
231 |
232 |
233 |
234 |
235 |
236 |
237 |
238 |
239 |
240 |
241 |
242 |
243 |
244 |
245 |
246 |
247 |
248 |
249 |
250 |
251 |
252 |
253 |
254 |
255 |
256 |
257 |
258 |
259 |
260 |
261 |
262 |
263 |
264 |
265 |
266 |
267 |
268 |
269 |
270 |
271 |
272 |
273 |
274 |
275 |
276 |
277 |
278 |
279 |
280 |
281 |
282 |
283 |
284 |
285 |
286 |
287 |
288 |
289 |
290 |
291 |
292 |
293 |
294 |
295 |
296 |
297 |
298 |
299 |
300 |
301 |
302 |
303 |
304 |
305 |
306 |
307 |
308 |
309 |
310 |
311 |
312 |
313 |
314 |
315 |
316 |
317 |
318 |
319 |
320 |
321 |
322 |
323 |
324 |
325 |
326 |
327 |
328 |
329 |
330 |
331 |
332 |
333 |
334 |
335 |
336 |
337 |
338 |
339 |
340 |
341 |
342 |
343 |
344 |
345 |
346 |
347 |
348 |
349 |
350 |
351 |
352 |
353 |
354 |
355 |
356 |
357 |
358 |
359 |
360 |
361 |
362 |
363 |
364 |
365 |
366 |
367 |
368 |
369 |
370 |
371 |
372 |
373 |
374 |
375 |
376 |
377 |
378 |
379 |
380 |
381 |
382 |
383 |
384 |
385 |
386 |
387 |
388 |
389 |
390 |
391 |
392 |
393 |
394 |
395 |
396 |
397 |
398 |
399 |
400 |
401 |
402 |
403 |
404 |
405 |
406 |
407 |
408 |
409 |
410 |
411 |
412 |
413 |
414 |
415 |
416 |
417 |
418 |
419 |
420 |
421 |
422 |
423 |
424 |
425 |
426 |
427 |
428 |
429 |
430 |
431 |
432 |
433 |
434 |
435 |
436 |
437 |
438 |
439 |
440 |
441 |
442 |
443 |
444 |
445 |
446 |
447 |
448 |
449 |
450 |
451 |
452 |
453 |
454 |
455 |
456 |
457 |
458 |
459 |
460 |
461 |
462 |
463 |
464 |
465 |
466 |
467 |
468 |
469 |
470 |
471 |
472 |
473 |
474 |
475 |
476 |
477 |
478 |
479 |
480 |
481 |
482 |
483 |
484 |
485 |
486 |
487 |
488 |
489 |
490 |
491 |
492 |
493 |
494 |
495 |
496 |
497 |
498 |
499 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1gthD_ |
|  | 100.0 | 31 | PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
2 | c2vdcI_ |
|  | 100.0 | 41 | PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
3 | c2v6oA_ |
|  | 100.0 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin glutathione reductase; PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)
4 | c1cjcA_ |
|  | 100.0 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (adrenodoxin reductase); PDBTitle: structure of adrenodoxin reductase of mitochondrial p4502 systems
5 | c1lqtB_ |
|  | 100.0 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:fpra; PDBTitle: a covalent modification of nadp+ revealed by the atomic resolution2 structure of fpra, a mycobacterium tuberculosis oxidoreductase
6 | c1hyuA_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: crystal structure of intact ahpf
7 | c1ti2F_ |
|  | 100.0 | 23 | PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici
8 | c1kqfB_ |
|  | 100.0 | 27 | PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli
9 | c3ntaA_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
10 | c2ivfB_ |
|  | 100.0 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
11 | d1kqfb1 |
|  | 100.0 | 28 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
12 | c1djnB_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
13 | c2c3dB_ |
|  | 100.0 | 21 | PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxopropyl-com reductase; PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site
14 | c3k30B_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex
15 | c3icrA_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a-disulfide reductase; PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
16 | d1h0hb_ |
|  | 100.0 | 24 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
17 | c2vpyB_ |
|  | 100.0 | 28 | PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
18 | c1ps9A_ |
|  | 100.0 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
19 | d1gtea1 |
|  | 100.0 | 30 | Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain
20 | c3oc4A_ |
|  | 100.0 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family; PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583
21 | c3iwaA_ |
| not modelled | 100.0 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris
22 | c2bcpA_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide
23 | c3kd9B_ |
| not modelled | 100.0 | 25 | PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii
24 | c2v3aA_ |
| not modelled | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin reductase; PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa.
25 | c2gr2A_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form)
26 | c3ic9D_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
27 | c2eq8E_ |
| not modelled | 100.0 | 23 | PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
28 | c2zbwA_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8
29 | c1q1wA_ |
| not modelled | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:putidaredoxin reductase; PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida
30 | c1yqzA_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution
31 | c3r9uA_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: thioredoxin-disulfide reductase from campylobacter jejuni.
32 | c3urhB_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021
33 | c1ojtA_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase
34 | d1vlfn2 |
| not modelled | 100.0 | 24 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
35 | c1gv4A_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif)
36 | c1x31A_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
37 | c1xdiA_ |
| not modelled | 100.0 | 21 | PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
38 | c1zmcG_ |
| not modelled | 100.0 | 22 | PDB header:oxidoreductase Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
39 | c3d8xB_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1
40 | c1zx9A_ |
| not modelled | 100.0 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: crystal structure of tn501 mera
41 | d1y5ib1 |
| not modelled | 100.0 | 24 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
42 | c2cduB_ |
| not modelled | 100.0 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis
43 | c3ef6A_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+) PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase
44 | c2hqmB_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae
45 | c1ebdB_ |
| not modelled | 100.0 | 21 | PDB header:complex (oxidoreductase/transferase) Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
46 | c1vdcA_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase
47 | c3lxdA_ |
| not modelled | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans
48 | c1v59B_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
49 | c2qaeA_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase
50 | c2a8xA_ |
| not modelled | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
51 | c2eq7B_ |
| not modelled | 100.0 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
52 | c1dxlC_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
53 | c1bwcA_ |
| not modelled | 100.0 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (glutathione reductase); PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate
54 | c1lpfB_ |
| not modelled | 100.0 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
55 | c1tytA_ |
| not modelled | 100.0 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:trypanothione reductase, oxidized form; PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution
56 | c1nhqA_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase (h2o2(a)) Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303
57 | c3fg2P_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: P: PDB Molecule:putative rubredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase for the cyp199a2 system from2 rhodopseudomonas palustris
58 | c3o0hA_ |
| not modelled | 100.0 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of glutathione reductase from bartonella henselae
59 | c3lzxB_ |
| not modelled | 100.0 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase 2; PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii)
60 | c1geuA_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase(flavoenzyme) Chain: A: PDB Molecule:glutathione reductase; PDBTitle: anatomy of an engineered nad-binding site
61 | c3l8kB_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus
62 | c1f6mF_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: F: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+
63 | c2r9zB_ |
| not modelled | 100.0 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione amide reductase; PDBTitle: glutathione amide reductase from chromatium gracile
64 | c3ab1B_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase
65 | c3dgzA_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2; PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
66 | c1zkqA_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial; PDBTitle: crystal structure of mouse thioredoxin reductase type 2
67 | c1m6iA_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif)
68 | c2a87A_ |
| not modelled | 100.0 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase
69 | c3ctyA_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of t. acidophilum thioredoxin reductase
70 | c2w0hA_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:trypanothione reductase; PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
71 | c3d1cA_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavin-containing putative monooxygenase; PDBTitle: crystal structure of flavin-containing putative monooxygenase2 (np_373108.1) from staphylococcus aureus mu50 at 2.40 a resolution
72 | c3hyxC_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: C: PDB Molecule:sulfide-quinone reductase; PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c
73 | c3kpgA_ |
| not modelled | 100.0 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone
74 | c1lvlA_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution
75 | c2nvkX_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: X: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
76 | c1fcdB_ |
| not modelled | 100.0 | 16 | PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
77 | c3cgdB_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i; PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
78 | c2q0lA_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+
79 | c1fl2A_ |
| not modelled | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: catalytic core component of the alkylhydroperoxide reductase ahpf from2 e.coli
80 | c1ndaD_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: D: PDB Molecule:trypanothione oxidoreductase; PDBTitle: the structure of trypanosoma cruzi trypanothione reductase2 in the oxidized and nadph reduced state
81 | c2q7vA_ |
| not modelled | 99.9 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase
82 | c3f8rD_ |
| not modelled | 99.9 | 18 | PDB header:oxidoreductase Chain: D: PDB Molecule:thioredoxin reductase (trxb-3); PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules
83 | c3s5wB_ |
| not modelled | 99.9 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:l-ornithine 5-monooxygenase; PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa
84 | c1onfA_ |
| not modelled | 99.9 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of plasmodium falciparum glutathione reductase
85 | c1y56A_ |
| not modelled | 99.9 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
86 | c1xhcA_ |
| not modelled | 99.9 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase /nitrite reductase; PDBTitle: nadh oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779-2 001
87 | c2cfyB_ |
| not modelled | 99.9 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of human thioredoxin reductase 1
88 | c3fbsB_ |
| not modelled | 99.9 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
89 | c3kljA_ |
| not modelled | 99.9 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum
90 | c3h8lA_ |
| not modelled | 99.9 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism
91 | c2vq7B_ |
| not modelled | 99.9 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:flavin-containing monooxygenase; PDBTitle: bacterial flavin-containing monooxygenase in complex with2 nadp: native data
92 | c1vqwB_ |
| not modelled | 99.9 | 22 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein with similarity to flavin-containing PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
93 | c1w4xA_ |
| not modelled | 99.9 | 18 | PDB header:oxygenase Chain: A: PDB Molecule:phenylacetone monooxygenase; PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
94 | c3gwdA_ |
| not modelled | 99.9 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:cyclohexanone monooxygenase; PDBTitle: closed crystal structure of cyclohexanone monooxygenase
95 | d1djqa3 |
| not modelled | 99.9 | 19 | Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like
96 | d1cjca1 |
| not modelled | 99.9 | 29 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like
97 | d1ojta1 |
| not modelled | 99.9 | 23 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
98 | d1lqta1 |
| not modelled | 99.9 | 29 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like
99 | d1qo8a2 |
| not modelled | 99.8 | 19 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
100 | d1y0pa2 |
| not modelled | 99.8 | 24 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
101 | d3lada1 |
| not modelled | 99.8 | 28 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
102 | d1dxla1 |
| not modelled | 99.8 | 18 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
103 | d1gtea3 |
| not modelled | 99.8 | 28 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like
104 | d3grsa1 |
| not modelled | 99.8 | 24 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
105 | c2bryA_ |
| not modelled | 99.8 | 16 | PDB header:transport Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: crystal structure of the native monooxygenase domain of2 mical at 1.45 a resolution
106 | d1mo9a1 |
| not modelled | 99.8 | 28 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
107 | d1d4ca2 |
| not modelled | 99.8 | 29 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
108 | d1lpfa1 |
| not modelled | 99.8 | 25 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
109 | d1seza1 |
| not modelled | 99.8 | 17 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
110 | d1ps9a3 |
| not modelled | 99.8 | 30 | Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like
111 | d1ebda1 |
| not modelled | 99.8 | 20 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
112 | d1reoa1 |
| not modelled | 99.8 | 16 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
113 | d1feca1 |
| not modelled | 99.8 | 18 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
114 | d1h6va1 |
| not modelled | 99.8 | 20 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
115 | d2bs2a2 |
| not modelled | 99.8 | 18 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
116 | d1v59a1 |
| not modelled | 99.8 | 20 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
117 | d1kf6a2 |
| not modelled | 99.8 | 20 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
118 | d1lvla1 |
| not modelled | 99.8 | 21 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
119 | d1lqta2 |
| not modelled | 99.8 | 18 | Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like
120 | d2iida1 |
| not modelled | 99.7 | 16 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0